BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780466|ref|YP_003064879.1| putative modification
methylase [Candidatus Liberibacter asiaticus str. psy62]
         (375 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780466|ref|YP_003064879.1| putative modification methylase [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040143|gb|ACT56939.1| putative modification methylase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 375

 Score =  775 bits (2001), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/375 (100%), Positives = 375/375 (100%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP
Sbjct: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN
Sbjct: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM
Sbjct: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV
Sbjct: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ
Sbjct: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
           PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS
Sbjct: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360

Query: 361 INTLRILVRKELYNC 375
           INTLRILVRKELYNC
Sbjct: 361 INTLRILVRKELYNC 375


>gi|315122079|ref|YP_004062568.1| putative modification methylase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495481|gb|ADR52080.1| putative modification methylase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 380

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/373 (86%), Positives = 351/373 (94%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           M++K+ L I++N+NSI  WKDKIIKGNSISVLEKLPAKSVDL+FADPPYNLQLNG+L+RP
Sbjct: 1   MNKKSRLVIDQNKNSILSWKDKIIKGNSISVLEKLPAKSVDLVFADPPYNLQLNGKLHRP 60

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           D+SLV+AVTDSWDKFSSFEAYDAFTRAWLLAC+RVLKP+GTLWVIGSYHNIFRIG MLQN
Sbjct: 61  DNSLVNAVTDSWDKFSSFEAYDAFTRAWLLACQRVLKPSGTLWVIGSYHNIFRIGAMLQN 120

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK+KGYTFNYDALKAANEDVQM
Sbjct: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKSKGYTFNYDALKAANEDVQM 180

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           RSDWL PICSG+ERLRNKDGEKLH TQKPE+LLSRIL SSTKPGD +LDPFFGSGT+GAV
Sbjct: 181 RSDWLFPICSGAERLRNKDGEKLHATQKPESLLSRILTSSTKPGDFVLDPFFGSGTTGAV 240

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           AKKL RSF+GIEM+QDYIDIATKRI SV+PLGNIELTVLTGK+ EPRVAFNLLVERG+IQ
Sbjct: 241 AKKLGRSFLGIEMEQDYIDIATKRIESVKPLGNIELTVLTGKKAEPRVAFNLLVERGIIQ 300

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
            GQ+LTNAQ NISA V  DGTL+SG E GSIHRVGAKVSG ETCNGWNFWYFEK G+LHS
Sbjct: 301 AGQVLTNAQRNISAIVRVDGTLVSGVESGSIHRVGAKVSGLETCNGWNFWYFEKYGKLHS 360

Query: 361 INTLRILVRKELY 373
           I+TLR LVRKELY
Sbjct: 361 IDTLRSLVRKELY 373


>gi|325292178|ref|YP_004278042.1| adenine DNA methyltransferase [Agrobacterium sp. H13-3]
 gi|325060031|gb|ADY63722.1| adenine DNA methyltransferase [Agrobacterium sp. H13-3]
          Length = 380

 Score =  573 bits (1477), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 259/354 (73%), Positives = 307/354 (86%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           WKD IIKG+ ++ L+ LP++SVD IFADPPYNLQL G L+RPD SLVDAV D WD+FSSF
Sbjct: 24  WKDSIIKGDCVAALDALPSQSVDAIFADPPYNLQLGGTLHRPDQSLVDAVDDEWDQFSSF 83

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           EAYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+G+MLQNL+FWILNDIVWRK+NPMP
Sbjct: 84  EAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGSMLQNLDFWILNDIVWRKTNPMP 143

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NF+GRRFQNAHET+IWAS  PKAKGYTFNY+ALKA+N+DVQMRSDWL PICSG ERL+  
Sbjct: 144 NFKGRRFQNAHETMIWASRDPKAKGYTFNYEALKASNDDVQMRSDWLFPICSGHERLKGD 203

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           DG+K+HPTQKPEALL+RI+++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +QDYI
Sbjct: 204 DGKKVHPTQKPEALLARIIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQDYI 263

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D A+ RIA+V+PLG  ELTV+TGKR EPRVAFN LVE GL++PGQ+LT+A+   SA + A
Sbjct: 264 DAASARIAAVEPLGKAELTVMTGKRAEPRVAFNTLVESGLVRPGQVLTDAKRRYSAIIRA 323

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGT+ SG   GSIHR+GAKV G + CNGW FW+FE   +L  I+ LR ++R EL
Sbjct: 324 DGTIASGGTAGSIHRLGAKVQGLDACNGWTFWHFEDGDQLKPIDDLRTIIRSEL 377


>gi|116250848|ref|YP_766686.1| modification methylase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255496|emb|CAK06572.1| putative modification methylase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 380

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 257/354 (72%), Positives = 305/354 (86%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE LP+ SVD+IFADPPYNLQL G L+RPD SLVDAV D WD+F+SF
Sbjct: 23  WVDTIIKGDCVSALEALPSHSVDIIFADPPYNLQLGGTLHRPDQSLVDAVDDDWDQFASF 82

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           EAYDAFTRAWLLACRRVLKP G++WVIGSYHNIFR+G  LQ+LNFWILNDI+WRK+NPMP
Sbjct: 83  EAYDAFTRAWLLACRRVLKPTGSIWVIGSYHNIFRVGATLQDLNFWILNDIIWRKTNPMP 142

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NF+GRRFQNAHET+IWASPS KAKGYTFNYDALKAAN+DVQMRSDWL PIC+GSERL+ +
Sbjct: 143 NFKGRRFQNAHETMIWASPSAKAKGYTFNYDALKAANDDVQMRSDWLFPICNGSERLKGE 202

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           DG+K HPTQKPEALL+R++++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +QDYI
Sbjct: 203 DGKKAHPTQKPEALLARVIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQDYI 262

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D A+ RIA+V+PLG  ELTV+TGK+ E RVAFN+LVE GLI+PGQ+LT+A+   SA V A
Sbjct: 263 DAASARIAAVEPLGKAELTVMTGKKAEVRVAFNVLVESGLIKPGQVLTDARRRYSAIVRA 322

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGT+ SG E GSIHR+GAKV G + CNGW FW+FE    L  I+ LR ++R +L
Sbjct: 323 DGTVASGGEAGSIHRLGAKVQGLDACNGWTFWHFEDGQSLRPIDDLRSVIRSDL 376


>gi|241203450|ref|YP_002974546.1| DNA methylase N-4/N-6 domain protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857340|gb|ACS55007.1| DNA methylase N-4/N-6 domain protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 379

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 257/354 (72%), Positives = 305/354 (86%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE LP+ SVD+IFADPPYNLQL G L+RPD SLVDAV D WD+F+SF
Sbjct: 23  WVDTIIKGDCVSALEALPSHSVDIIFADPPYNLQLGGTLHRPDQSLVDAVDDEWDQFASF 82

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           EAYDAFTRAWLLACRRVLKP G++WVIGSYHNIFR+G  LQ+LNFWILNDI+WRK+NPMP
Sbjct: 83  EAYDAFTRAWLLACRRVLKPTGSIWVIGSYHNIFRVGATLQDLNFWILNDIIWRKTNPMP 142

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NF+GRRFQNAHET+IWASPS KAKGYTFNYDALKAAN+DVQMRSDWL PIC+GSERL+ +
Sbjct: 143 NFKGRRFQNAHETMIWASPSAKAKGYTFNYDALKAANDDVQMRSDWLFPICNGSERLKGE 202

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           DG+K HPTQKPEALL+R++++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +QDYI
Sbjct: 203 DGKKAHPTQKPEALLARVIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQDYI 262

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D A+ RIA+V+PLG  ELTV+TGK+ E RVAFN+LVE GLI+PGQ+LT+A+   SA V A
Sbjct: 263 DAASARIAAVEPLGKAELTVMTGKKAEVRVAFNVLVESGLIKPGQVLTDARRRYSAIVRA 322

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGT+ SG E GSIHR+GAKV G + CNGW FW+FE    L  I+ LR ++R +L
Sbjct: 323 DGTVASGGEAGSIHRLGAKVQGLDACNGWTFWHFEDGQSLRPIDDLRSVIRSDL 376


>gi|159184467|ref|NP_353817.2| cell cycle regulated site-specific DNA-methyltransferase protein
           [Agrobacterium tumefaciens str. C58]
 gi|159139778|gb|AAK86602.2| cell cycle regulated site-specific DNA-methyltransferase protein
           [Agrobacterium tumefaciens str. C58]
          Length = 381

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 255/354 (72%), Positives = 303/354 (85%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           WKD IIKG+ ++ L+ LP++SVD IFADPPYNLQL G L+RPD SLVDAV D WD+F+SF
Sbjct: 24  WKDSIIKGDCVAALDALPSQSVDAIFADPPYNLQLGGTLHRPDQSLVDAVDDEWDQFASF 83

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+G MLQNL+FWILNDIVWRK+NPMP
Sbjct: 84  DAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGAMLQNLDFWILNDIVWRKTNPMP 143

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NF+GRRFQNAHET+IWAS  PKAK YTFNYDALKA+N+DVQMRSDWL PICSG ERL+  
Sbjct: 144 NFKGRRFQNAHETMIWASRDPKAKSYTFNYDALKASNDDVQMRSDWLFPICSGHERLKGD 203

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           DG+K+HPTQKPEALL+RI+++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +QDYI
Sbjct: 204 DGKKVHPTQKPEALLARIIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQDYI 263

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D A+ RI +V+PLG  ELTV+TGK+ EPRVAFN LVE GL++PGQ+LT+A+   SA + A
Sbjct: 264 DAASARITAVEPLGKAELTVMTGKKAEPRVAFNTLVESGLVRPGQVLTDARRRYSAIIRA 323

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGTL SG   GSIHR+GAKV G + CNGW FW+FE    L  I+ LR ++R E+
Sbjct: 324 DGTLASGGTAGSIHRLGAKVQGLDACNGWTFWHFEDGDALKPIDDLRTIIRSEM 377


>gi|14091014|gb|AAK53552.1|AF327563_1 cell cycle-regulated methyltransferase CcrM [Agrobacterium
           tumefaciens]
          Length = 381

 Score =  565 bits (1455), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 254/354 (71%), Positives = 302/354 (85%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           WKD IIKG+ ++ L+ LP++SVD IFADPPYNLQL G L+RPD SLVDAV D WD+F+SF
Sbjct: 24  WKDSIIKGDCVAALDALPSQSVDAIFADPPYNLQLGGTLHRPDQSLVDAVDDEWDQFASF 83

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+G MLQNL+FWILNDIVWRK+NPMP
Sbjct: 84  DAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGAMLQNLDFWILNDIVWRKTNPMP 143

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NF+GRRFQNAHET+IWAS  PKAK YTFNYDALKA+N+DVQMRSDWL PICSG ERL+  
Sbjct: 144 NFKGRRFQNAHETMIWASRDPKAKSYTFNYDALKASNDDVQMRSDWLFPICSGHERLKGD 203

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           DG+K+HPTQKPEALL+RI+++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +QDYI
Sbjct: 204 DGKKVHPTQKPEALLARIIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQDYI 263

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D A+ RI +V+PLG  ELTV+TGK+ EPRVAFN LVE G ++PGQ+LT+A+   SA + A
Sbjct: 264 DAASARITAVEPLGKAELTVMTGKKAEPRVAFNTLVESGFVRPGQVLTDARRRYSAIIRA 323

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGTL SG   GSIHR+GAKV G + CNGW FW+FE    L  I+ LR ++R E+
Sbjct: 324 DGTLASGGTAGSIHRLGAKVQGLDACNGWTFWHFEDGDALKPIDDLRTIIRSEM 377


>gi|86356641|ref|YP_468533.1| site-specific DNA-methyltransferase (adenine-specific) protein
           [Rhizobium etli CFN 42]
 gi|86280743|gb|ABC89806.1| site-specific DNA-methyltransferase (adenine-specific) protein
           [Rhizobium etli CFN 42]
          Length = 380

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 254/354 (71%), Positives = 305/354 (86%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE LP  SVD+IFADPPYNLQL G L+RPD SLVDAV D WD+F+SF
Sbjct: 23  WVDTIIKGDCVSALEALPTHSVDVIFADPPYNLQLGGTLHRPDQSLVDAVDDEWDQFASF 82

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           EAYDAFTRAWLLACRRVLKP G++WVIGSYHNIFR+G  LQ+LNFWILNDI+WRK+NPMP
Sbjct: 83  EAYDAFTRAWLLACRRVLKPTGSIWVIGSYHNIFRVGATLQDLNFWILNDIIWRKTNPMP 142

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NF+GRRFQNAHET+IWASP+ KAKGYTFNYDA+KAAN+DVQMRSDWL PIC+G+ERL+ +
Sbjct: 143 NFKGRRFQNAHETMIWASPNAKAKGYTFNYDAMKAANDDVQMRSDWLFPICNGNERLKGE 202

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           DG+K+HPTQKPEALL+R++++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +QDYI
Sbjct: 203 DGKKVHPTQKPEALLARVIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQDYI 262

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D A+ RIA+V+PLG  ELTV+TGK+ E RVAFN+LVE GLI+PGQ+LT+A+   SA V A
Sbjct: 263 DAASARIAAVEPLGKAELTVMTGKKAEVRVAFNVLVESGLIKPGQVLTDAKRRYSAIVRA 322

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGT+ SG E GSIHR+GAKV G + CNGW FW+FE    L  I+ LR ++R +L
Sbjct: 323 DGTVASGGEAGSIHRLGAKVQGLDACNGWTFWHFEDGQSLRPIDDLRSVIRSDL 376


>gi|218510491|ref|ZP_03508369.1| site-specific DNA-methyltransferase (adenine-specific) protein
           [Rhizobium etli Brasil 5]
 gi|327191944|gb|EGE58926.1| site-specific DNA-methyltransferase (adenine-specific) protein
           [Rhizobium etli CNPAF512]
          Length = 380

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 254/354 (71%), Positives = 305/354 (86%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE LP  SVD+IFADPPYNLQL G L+RPD SLVDAV D WD+F+SF
Sbjct: 23  WIDTIIKGDCVSALEALPTHSVDVIFADPPYNLQLGGTLHRPDQSLVDAVDDEWDQFASF 82

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           EAYDAFTRAWLLACRRVLKP G++WVIGSYHNIFR+G  LQ+LNFWILNDI+WRK+NPMP
Sbjct: 83  EAYDAFTRAWLLACRRVLKPTGSIWVIGSYHNIFRVGATLQDLNFWILNDIIWRKTNPMP 142

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NF+GRRFQNAHET+IWASP+ KAKGYTFNYDA+KAAN+DVQMRSDWL PIC+G+ERL+ +
Sbjct: 143 NFKGRRFQNAHETMIWASPNAKAKGYTFNYDAMKAANDDVQMRSDWLFPICNGNERLKGE 202

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           DG+K+HPTQKPEALL+R++++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +QDYI
Sbjct: 203 DGKKVHPTQKPEALLARVIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQDYI 262

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D A+ RIA+V+PLG  ELTV+TGK+ E RVAFN+LVE GLI+PGQ+LT+A+   SA V A
Sbjct: 263 DAASARIAAVEPLGKAELTVMTGKKAEVRVAFNVLVESGLIKPGQVLTDAKRRYSAIVRA 322

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGT+ SG E GSIHR+GAKV G + CNGW FW+FE    L  I+ LR ++R +L
Sbjct: 323 DGTVASGGEAGSIHRLGAKVQGLDACNGWTFWHFEDGQSLRPIDDLRSVIRSDL 376


>gi|190890705|ref|YP_001977247.1| site-specific DNA-methyltransferase (adenine-specific) protein
           [Rhizobium etli CIAT 652]
 gi|190695984|gb|ACE90069.1| site-specific DNA-methyltransferase (adenine-specific) protein
           [Rhizobium etli CIAT 652]
          Length = 380

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 254/354 (71%), Positives = 305/354 (86%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE LP  SVD+IFADPPYNLQL G L+RPD SLVDAV D WD+F+SF
Sbjct: 23  WIDTIIKGDCVSALEALPTHSVDVIFADPPYNLQLGGTLHRPDQSLVDAVDDEWDQFASF 82

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           EAYDAFTRAWLLACRRVLKP G++WVIGSYHNIFR+G  LQ+LNFWILNDI+WRK+NPMP
Sbjct: 83  EAYDAFTRAWLLACRRVLKPTGSIWVIGSYHNIFRVGATLQDLNFWILNDIIWRKTNPMP 142

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NF+GRRFQNAHET+IWASP+ KAKGYTFNYDA+KAAN+DVQMRSDWL PIC+G+ERL+ +
Sbjct: 143 NFKGRRFQNAHETMIWASPNAKAKGYTFNYDAMKAANDDVQMRSDWLFPICNGNERLKGE 202

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           DG+K+HPTQKPEALL+R++++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +QDYI
Sbjct: 203 DGKKVHPTQKPEALLARVIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQDYI 262

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D A+ RIA+V+PLG  ELTV+TGK+ E RVAFN+LVE GLI+PGQ+LT+A+   SA V A
Sbjct: 263 DAASARIAAVEPLGKAELTVMTGKKAEVRVAFNVLVESGLIKPGQVLTDAKRRYSAIVRA 322

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGT+ SG E GSIHR+GAKV G + CNGW FW+FE    L  I+ LR ++R +L
Sbjct: 323 DGTVASGGEAGSIHRLGAKVQGLDACNGWTFWHFEDGQSLRPIDDLRSVIRSDL 376


>gi|209548255|ref|YP_002280172.1| DNA methylase N-4/N-6 [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209534011|gb|ACI53946.1| DNA methylase N-4/N-6 domain protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 380

 Score =  561 bits (1445), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 253/354 (71%), Positives = 305/354 (86%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE LP  SVD+IFADPPYNLQL G L+RPD SLVDAV D WD+F+SF
Sbjct: 23  WVDTIIKGDCVSALEALPTHSVDVIFADPPYNLQLGGTLHRPDQSLVDAVDDEWDQFASF 82

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           EAYDAFTRAWLLACRRVLKP G++WVIGSYHNIFR+G  LQ+LNFWILNDI+WRK+NPMP
Sbjct: 83  EAYDAFTRAWLLACRRVLKPTGSIWVIGSYHNIFRVGATLQDLNFWILNDIIWRKTNPMP 142

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NF+GRRFQNAHET+IWASP+ KAKGYTFNYDA+KAAN+DVQMRSDWL PIC+G+ERL+ +
Sbjct: 143 NFKGRRFQNAHETMIWASPNAKAKGYTFNYDAMKAANDDVQMRSDWLFPICNGNERLKGE 202

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           DG+K+HPTQKPEALL+R++++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +QDYI
Sbjct: 203 DGKKVHPTQKPEALLARVIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQDYI 262

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D A+ RIA+V+PLG  ELTV+TGK+ E RVAFN+LVE GLI+PGQ+LT+A+   SA V A
Sbjct: 263 DAASARIAAVEPLGKAELTVMTGKKAEVRVAFNVLVESGLIKPGQVLTDAKRRYSAIVRA 322

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGT+ SG + GSIHR+GAKV G + CNGW FW+FE    L  I+ LR ++R +L
Sbjct: 323 DGTVASGGDAGSIHRLGAKVQGLDACNGWTFWHFEDGQSLRPIDDLRSVIRSDL 376


>gi|227821131|ref|YP_002825101.1| modification methylase SmeIP [Sinorhizobium fredii NGR234]
 gi|227340130|gb|ACP24348.1| modification methylase SmeIP [Sinorhizobium fredii NGR234]
          Length = 376

 Score =  560 bits (1444), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 257/372 (69%), Positives = 307/372 (82%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           MS   SLA          W D IIKG+ ++ L  LP  SVD++FADPPYNLQL G L+RP
Sbjct: 1   MSSVVSLAEISRAARPLSWLDSIIKGDCVAALNALPDNSVDVVFADPPYNLQLGGMLHRP 60

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           D SLVDAV D WD+F+SFEAYDAFTRAWLLACRRVLKP GTLWVIGSYHNIFR+G +LQ+
Sbjct: 61  DQSLVDAVDDEWDQFASFEAYDAFTRAWLLACRRVLKPTGTLWVIGSYHNIFRVGAILQD 120

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           L+FWILNDI+WRK+NPMPNF+GRRFQNAHETLIWA+P+ KAKGYTFNY+A+KAAN+DVQM
Sbjct: 121 LHFWILNDIIWRKTNPMPNFKGRRFQNAHETLIWATPNAKAKGYTFNYEAMKAANDDVQM 180

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           RSDWL PICSG ERL+  DG+K+HPTQKPEALL+RIL++STKPGD++LDPFFGSGT+GAV
Sbjct: 181 RSDWLFPICSGGERLKGDDGKKVHPTQKPEALLARILMASTKPGDVVLDPFFGSGTTGAV 240

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           AK+L R F+GIE +QDYID A +RIA+V+PLG   L+V+TGK+ EPRVAFN L+E GLI+
Sbjct: 241 AKRLGRHFVGIEREQDYIDAAAERIAAVEPLGKATLSVMTGKKAEPRVAFNTLIESGLIK 300

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
           PG +LT+A+   SA V ADGTL SG E GSIHR+GAKV G + CNGW FW+FE  G L  
Sbjct: 301 PGTVLTDAKRRYSAIVRADGTLASGGEAGSIHRLGAKVQGLDACNGWTFWHFEAGGTLKP 360

Query: 361 INTLRILVRKEL 372
           I+ LR ++R +L
Sbjct: 361 IDELRSVIRNDL 372


>gi|15964679|ref|NP_385032.1| adenine DNA methyltransferase protein [Sinorhizobium meliloti 1021]
 gi|307304257|ref|ZP_07584009.1| DNA methylase N-4/N-6 domain protein [Sinorhizobium meliloti
           BL225C]
 gi|307320562|ref|ZP_07599977.1| DNA methylase N-4/N-6 domain protein [Sinorhizobium meliloti AK83]
 gi|7387561|sp|O30569|MTS1_RHIME RecName: Full=Modification methylase SmeI; Short=M.SmeI; AltName:
           Full=Adenine-specific methyltransferase SmeIP; AltName:
           Full=M.CcrMI ortholog; AltName: Full=Modification
           methylase SmeIP; Short=M.SmeIP
 gi|15073857|emb|CAC45498.1| Adenine DNA methyltransferase [Sinorhizobium meliloti 1021]
 gi|306893838|gb|EFN24609.1| DNA methylase N-4/N-6 domain protein [Sinorhizobium meliloti AK83]
 gi|306902725|gb|EFN33318.1| DNA methylase N-4/N-6 domain protein [Sinorhizobium meliloti
           BL225C]
          Length = 376

 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 257/372 (69%), Positives = 308/372 (82%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           MS   SLA          W D IIKG+ ++ L  LP  SVD++FADPPYNLQL G L+RP
Sbjct: 1   MSSVVSLAEISRAARPLNWLDSIIKGDCVAALNALPDHSVDVVFADPPYNLQLGGTLHRP 60

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           D SLVDAV D WD+F+SFEAYDAFTRAWLLACRRVLKP GTLWVIGSYHNIFR+G +LQ+
Sbjct: 61  DQSLVDAVDDDWDQFASFEAYDAFTRAWLLACRRVLKPTGTLWVIGSYHNIFRVGAILQD 120

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           L+FW+LNDI+WRK+NPMPNF+GRRFQNAHETLIWA+P+ KAKGYTFNY+A+KAAN+DVQM
Sbjct: 121 LHFWVLNDIIWRKTNPMPNFKGRRFQNAHETLIWATPNAKAKGYTFNYEAMKAANDDVQM 180

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           RSDWL PICSGSERL+  DG+K+HPTQKPEALL+RIL++STKPGD++LDPFFGSGT+GAV
Sbjct: 181 RSDWLFPICSGSERLKGDDGKKVHPTQKPEALLARILMASTKPGDVVLDPFFGSGTTGAV 240

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           AK+L R F+GIE +QDYID A +RIA+V+PLG   L+V+TGK+ EPRVAFN LVE GLI+
Sbjct: 241 AKRLGRHFVGIEREQDYIDAAAERIAAVEPLGKATLSVMTGKKAEPRVAFNTLVESGLIK 300

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
           PG +LT+A+   SA V ADGTL SG E GSIHR+GAKV G + CNGW FW+FE+   L  
Sbjct: 301 PGTVLTDAKRRYSAIVRADGTLASGGEAGSIHRLGAKVQGLDACNGWTFWHFEEGSVLKP 360

Query: 361 INTLRILVRKEL 372
           I+ LR ++R +L
Sbjct: 361 IDELRSVIRNDL 372


>gi|222147821|ref|YP_002548778.1| cell cycle regulated site-specific DNA-methyltransferase protein
           [Agrobacterium vitis S4]
 gi|221734809|gb|ACM35772.1| cell cycle regulated site-specific DNA-methyltransferase protein
           [Agrobacterium vitis S4]
          Length = 377

 Score =  558 bits (1439), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 254/372 (68%), Positives = 311/372 (83%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           M+    LA     N  F W + IIKG+ ++ LE LP +SVD IFADPPYNLQL G L+RP
Sbjct: 1   MASVFPLADLRRSNDPFAWMNSIIKGDCVAALEALPDQSVDAIFADPPYNLQLGGMLHRP 60

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           D S+VDAV D+WD+F+SFEAYDAFTRAWLLACRRVLKP+GT+WVIGSYHNIFR+G  LQ+
Sbjct: 61  DQSVVDAVDDAWDQFASFEAYDAFTRAWLLACRRVLKPHGTIWVIGSYHNIFRVGATLQD 120

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           LNFWILNDIVWRK+NPMPNF+GRRFQNAHET+IWAS   KAK YTFNYDALKA+N+DVQM
Sbjct: 121 LNFWILNDIVWRKTNPMPNFKGRRFQNAHETMIWASRDAKAKSYTFNYDALKASNDDVQM 180

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           RSDWL PICSG ERL+ +DG+K+HPTQKPEALL+R++++STKPGD++LDPFFGSGT+GAV
Sbjct: 181 RSDWLFPICSGGERLKGEDGKKIHPTQKPEALLARVILASTKPGDVVLDPFFGSGTTGAV 240

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           AK+L R+F+GIE +QDYID A+ RI +V+ LG +ELTVLTGK++EPRVAFN L++ GL+Q
Sbjct: 241 AKRLGRNFVGIEREQDYIDAASARIDAVEALGKVELTVLTGKKSEPRVAFNTLLDSGLLQ 300

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
           PGQ+L+  +   SA + ADGTL+SGT+ GSIHRVGAKV G + CNGW FW++E  G+L  
Sbjct: 301 PGQVLSCEKRRHSAIIRADGTLVSGTQAGSIHRVGAKVRGLDACNGWTFWHYEDAGKLKP 360

Query: 361 INTLRILVRKEL 372
           I+ LR LVR  +
Sbjct: 361 IDDLRSLVRASM 372


>gi|222085157|ref|YP_002543687.1| cell cycle regulated site-specific DNA-methyltransferase protein
           [Agrobacterium radiobacter K84]
 gi|221722605|gb|ACM25761.1| cell cycle regulated site-specific DNA-methyltransferase protein
           [Agrobacterium radiobacter K84]
          Length = 376

 Score =  557 bits (1436), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 251/354 (70%), Positives = 302/354 (85%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ ++ LE LP  SVD+IFADPPYNLQL G L+RPD SLVDAV D WD+F+SF
Sbjct: 19  WVDTIIKGDCVAALEALPTHSVDVIFADPPYNLQLGGTLHRPDQSLVDAVDDEWDQFASF 78

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           EAYDAFTRAWLLACRRVLKP GT+WVIGSYHNIFR+G  +Q+LNFWILNDIVWRK+NPMP
Sbjct: 79  EAYDAFTRAWLLACRRVLKPTGTIWVIGSYHNIFRVGATMQDLNFWILNDIVWRKTNPMP 138

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NF+GRRFQNAHET+IWASP+ K KGYTFNYDA+KAAN+DVQMRSDWL PIC+G ERL+  
Sbjct: 139 NFKGRRFQNAHETMIWASPNAKTKGYTFNYDAMKAANDDVQMRSDWLFPICNGGERLKGD 198

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           DG+K+HPTQKPEALL+R++++S+KPGDIILDPFFGSGT+GAVAK+L R F+GIE +QDYI
Sbjct: 199 DGKKVHPTQKPEALLARVIMASSKPGDIILDPFFGSGTTGAVAKRLGRHFVGIEREQDYI 258

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D A+ RIASV+PLG  ELTV+TGK+ E RVAFN+LVE GLI+PGQ+LT+A+   SA V A
Sbjct: 259 DAASARIASVEPLGKAELTVMTGKKAEARVAFNVLVESGLIKPGQVLTDARRRHSAIVRA 318

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGT+ +G E GSIHR+GAKV G + CNGW FW+F+    L  I+ LR ++R ++
Sbjct: 319 DGTVAAGGEAGSIHRLGAKVQGLDACNGWTFWHFDDGQSLRPIDELRAIIRNDM 372


>gi|150395765|ref|YP_001326232.1| DNA methylase N-4/N-6 domain-containing protein [Sinorhizobium
           medicae WSM419]
 gi|150027280|gb|ABR59397.1| DNA methylase N-4/N-6 domain protein [Sinorhizobium medicae WSM419]
          Length = 398

 Score =  557 bits (1436), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 256/372 (68%), Positives = 307/372 (82%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           MS   SLA          W D IIKG+ ++ L  LP  SVD++FADPPYNLQL G L+RP
Sbjct: 23  MSSVVSLAEISRAARPLNWLDSIIKGDCVAALNALPDNSVDVVFADPPYNLQLGGTLHRP 82

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           D SLVDAV D WD+F+SFEAYDAFTRAWLLACRRVLKP GTLWVIGSYHNIFR+G +LQ+
Sbjct: 83  DQSLVDAVDDDWDQFASFEAYDAFTRAWLLACRRVLKPTGTLWVIGSYHNIFRVGAILQD 142

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           L+FW+LNDI+WRK+NPMPNF+GRRFQNAHETLIWA+P+ KAKGYTFNY+A+KAAN+DVQM
Sbjct: 143 LHFWVLNDIIWRKTNPMPNFKGRRFQNAHETLIWATPNAKAKGYTFNYEAMKAANDDVQM 202

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           RSDWL PICSGSERL+  DG+K+HPTQKPEALL+RIL++STKPGD++LDPFFGSGT+GAV
Sbjct: 203 RSDWLFPICSGSERLKGDDGKKVHPTQKPEALLARILMASTKPGDVVLDPFFGSGTTGAV 262

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           AK+L R F+GIE +QDYID A +RIA+V+PLG   L+V+TGK+ EPRVAFN L+E GLI+
Sbjct: 263 AKRLGRHFVGIEREQDYIDAAAERIAAVEPLGKATLSVMTGKKAEPRVAFNTLIESGLIK 322

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
           PG +LT+A+   SA V ADGTL SG E GSIHR+GAKV G + CNGW FW+FE    L  
Sbjct: 323 PGTVLTDAKRRYSAIVRADGTLASGGEAGSIHRLGAKVQGLDACNGWTFWHFEDGSVLKP 382

Query: 361 INTLRILVRKEL 372
           I+ LR ++R +L
Sbjct: 383 IDELRSVIRNDL 394


>gi|218682477|ref|ZP_03530078.1| site-specific DNA-methyltransferase (adenine-specific) protein
           [Rhizobium etli CIAT 894]
          Length = 380

 Score =  554 bits (1428), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 251/354 (70%), Positives = 302/354 (85%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE LP  SVD+IFADPPYNLQL G L+RPD SLVDAV D WD+F+S 
Sbjct: 23  WVDTIIKGDCVSALEALPNHSVDVIFADPPYNLQLGGSLHRPDQSLVDAVDDEWDQFASL 82

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           EAYDAFTRAWLLACRRVLKP G++WVIGSYHNIFR+G  LQ+LNFWILNDI+WRK+NPMP
Sbjct: 83  EAYDAFTRAWLLACRRVLKPTGSIWVIGSYHNIFRVGATLQDLNFWILNDIIWRKTNPMP 142

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NF+GRRFQNAHET+IWASP+ KAKGYTFNYDA+KAAN+DVQMRSDWL PIC+G+ERL+ +
Sbjct: 143 NFKGRRFQNAHETMIWASPNAKAKGYTFNYDAMKAANDDVQMRSDWLFPICNGNERLKGE 202

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           DG+K+HPTQKPEALL+R++++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +QDYI
Sbjct: 203 DGKKVHPTQKPEALLARVIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQDYI 262

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D A+ RIA+V+PLG  ELTV+TGK+ E RVAFN+LVE GLI+ GQ+LT+ +   SA V A
Sbjct: 263 DAASARIAAVEPLGKAELTVMTGKKAEVRVAFNVLVESGLIKAGQVLTDVRRRYSAIVRA 322

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGT+ SG E GSIHR+GAKV G + CNGW FW+FE    L  I+ LR ++R +L
Sbjct: 323 DGTVASGGEAGSIHRLGAKVQGLDACNGWTFWHFEDGQSLRPIDDLRSVIRSDL 376


>gi|2305232|gb|AAB71350.1| adenine DNA methyltransferase [Sinorhizobium meliloti]
          Length = 376

 Score =  544 bits (1402), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 251/372 (67%), Positives = 302/372 (81%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           MS   SLA          W D IIKG+ ++ L  LP  SVD++FADPPYNLQL G L+RP
Sbjct: 1   MSSVVSLAEISRAARPLNWLDSIIKGDCVAALNALPDHSVDVVFADPPYNLQLGGTLHRP 60

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           D SLVDAV D WD+F+SFEAYDAFTRAWLLACRRVLKP GTLWVIGSYHNIFR+G +LQ+
Sbjct: 61  DQSLVDAVDDDWDQFASFEAYDAFTRAWLLACRRVLKPTGTLWVIGSYHNIFRVGAILQD 120

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           L+FW+LNDI+WRK+ P    +GRRFQNAHETLIWA+ + KAKGYTFNY+A+KAAN+DVQM
Sbjct: 121 LHFWVLNDIIWRKTQPDAELQGRRFQNAHETLIWATANAKAKGYTFNYEAMKAANDDVQM 180

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           RSDWL PICSGSERL+  DG+K+HPTQKPEALL+RIL++STKPGD++LDPFFGSGT+GAV
Sbjct: 181 RSDWLFPICSGSERLKGDDGKKVHPTQKPEALLARILMASTKPGDVVLDPFFGSGTTGAV 240

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           AK+L R F+GIE +QDYID A +RIA+V+PLG   L+V+TGK+ EPRVAFN LVE GLI+
Sbjct: 241 AKRLGRHFVGIEREQDYIDAAAERIAAVEPLGKATLSVMTGKKAEPRVAFNTLVESGLIK 300

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
           PG +LT+A+   SA V ADGTL SG E GSIHR+GAKV G + CNGW FW+FE+   L  
Sbjct: 301 PGTVLTDAKRRYSAIVRADGTLASGGEAGSIHRLGAKVQGLDACNGWTFWHFEEGSVLKP 360

Query: 361 INTLRILVRKEL 372
           I+ LR ++R +L
Sbjct: 361 IDELRSVIRNDL 372


>gi|237814961|ref|ZP_04593959.1| Modification methylase HinfI [Brucella abortus str. 2308 A]
 gi|237789798|gb|EEP64008.1| Modification methylase HinfI [Brucella abortus str. 2308 A]
          Length = 403

 Score =  542 bits (1396), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 243/354 (68%), Positives = 299/354 (84%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE+LP  SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 45  WLDSIIKGDCVSALERLPDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 104

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 105 QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 164

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHETLIWAS   K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 165 NFRGRRFQNAHETLIWASREQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 224

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 225 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 284

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RI +V+PLG  ELTV+TGKR EPRVAF  ++E GL++PG +L + +   +A V A
Sbjct: 285 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRA 344

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGTL +  E GSIHR+GA+V G + CNGW FW+FE+ G L  I+ LR ++R+++
Sbjct: 345 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQM 398


>gi|240850100|ref|YP_002971493.1| adenine DNA methyltransferase [Bartonella grahamii as4aup]
 gi|240267223|gb|ACS50811.1| adenine DNA methyltransferase [Bartonella grahamii as4aup]
          Length = 378

 Score =  542 bits (1396), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 245/358 (68%), Positives = 299/358 (83%)

Query: 15  SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           S   W++KI KG+ +SVLEKLP  SVD+IFADPPYNLQL+G LYRPDHSLVDAV D+WD+
Sbjct: 15  SQMPWRNKIFKGDCVSVLEKLPKHSVDMIFADPPYNLQLDGALYRPDHSLVDAVDDAWDQ 74

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
           F SF AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR+GT LQ+L FW+LNDI+WRK+
Sbjct: 75  FESFAAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRVGTALQDLGFWMLNDIIWRKN 134

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           NPMPNFRGRRFQNAHETLIWA    K K YTFNYDALKAANED+QMRSDWL P+C+G+ER
Sbjct: 135 NPMPNFRGRRFQNAHETLIWAVRDQKDKKYTFNYDALKAANEDLQMRSDWLFPLCTGAER 194

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L++  G KLHPTQKP+ALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK L R F+GIE +
Sbjct: 195 LKDDSGRKLHPTQKPQALLARIIMASSKPGDVILDPFFGSGTTGAVAKLLGRDFVGIERE 254

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISA 314
           QDYID A +RIA+V+PL   EL +L  K+ EPRVAFN L+E GL+ PG++L + +  +SA
Sbjct: 255 QDYIDAACERIAAVKPLAQPELAILDRKKAEPRVAFNSLLEAGLLYPGEVLYDRKKQVSA 314

Query: 315 TVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
            V ADGT++ G E GSIH +G K   S++CNGW FWY+E+ G L SI+ LR+++R ++
Sbjct: 315 IVRADGTIMHGGEAGSIHAMGRKAQDSQSCNGWTFWYYEENGRLKSIDHLRMIIRSQM 372


>gi|189023721|ref|YP_001934489.1| Adenine-specific methyltransferase [Brucella abortus S19]
 gi|260754270|ref|ZP_05866618.1| DNA methylase N-4/N-6 domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260757489|ref|ZP_05869837.1| DNA methylase N-4/N-6 domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260761313|ref|ZP_05873656.1| DNA methylase N-4/N-6 domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260883294|ref|ZP_05894908.1| modification methylase BabI [Brucella abortus bv. 9 str. C68]
 gi|261213516|ref|ZP_05927797.1| DNA methylase N-4/N-6 domain-containing protein [Brucella abortus
           bv. 3 str. Tulya]
 gi|297247885|ref|ZP_06931603.1| adenine-specific DNA-methyltransferase [Brucella abortus bv. 5 str.
           B3196]
 gi|223635297|sp|B2S9Y5|MTB1_BRUA1 RecName: Full=Modification methylase BabI; Short=M.BabI; AltName:
           Full=Adenine-specific methyltransferase BabI; AltName:
           Full=DNA methyltransferase CcrM; AltName: Full=M.CcrMI
           ortholog
 gi|189019293|gb|ACD72015.1| Adenine-specific methyltransferase [Brucella abortus S19]
 gi|260667807|gb|EEX54747.1| DNA methylase N-4/N-6 domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260671745|gb|EEX58566.1| DNA methylase N-4/N-6 domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260674378|gb|EEX61199.1| DNA methylase N-4/N-6 domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260872822|gb|EEX79891.1| modification methylase BabI [Brucella abortus bv. 9 str. C68]
 gi|260915123|gb|EEX81984.1| DNA methylase N-4/N-6 domain-containing protein [Brucella abortus
           bv. 3 str. Tulya]
 gi|297175054|gb|EFH34401.1| adenine-specific DNA-methyltransferase [Brucella abortus bv. 5 str.
           B3196]
          Length = 386

 Score =  542 bits (1396), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 243/354 (68%), Positives = 299/354 (84%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE+LP  SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 28  WLDSIIKGDCVSALERLPDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 87

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 88  QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 147

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHETLIWAS   K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 148 NFRGRRFQNAHETLIWASREQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 207

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 208 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 267

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RI +V+PLG  ELTV+TGKR EPRVAF  ++E GL++PG +L + +   +A V A
Sbjct: 268 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRA 327

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGTL +  E GSIHR+GA+V G + CNGW FW+FE+ G L  I+ LR ++R+++
Sbjct: 328 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQM 381


>gi|148560742|ref|YP_001258505.1| modification methylase BabI [Brucella ovis ATCC 25840]
 gi|223635317|sp|A5VP58|MTB1_BRUO2 RecName: Full=Modification methylase BabI; Short=M.BabI; AltName:
           Full=Adenine-specific methyltransferase BabI; AltName:
           Full=DNA methyltransferase CcrM; AltName: Full=M.CcrMI
           ortholog
 gi|148371999|gb|ABQ61978.1| modification methylase BabI [Brucella ovis ATCC 25840]
          Length = 386

 Score =  542 bits (1396), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 243/354 (68%), Positives = 299/354 (84%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE+LP  SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 28  WLDSIIKGDCVSALERLPDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 87

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 88  QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 147

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHETLIWAS   K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 148 NFRGRRFQNAHETLIWASRDQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 207

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 208 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 267

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RI +V+PLG  ELTV+TGKR EPRVAF  ++E GL++PG +L + +   +A V A
Sbjct: 268 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRA 327

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGTL +  E GSIHR+GA+V G + CNGW FW+FE+ G L  I+ LR ++R+++
Sbjct: 328 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQM 381


>gi|225626998|ref|ZP_03785037.1| Modification methylase HinfI [Brucella ceti str. Cudo]
 gi|225618655|gb|EEH15698.1| Modification methylase HinfI [Brucella ceti str. Cudo]
          Length = 403

 Score =  542 bits (1396), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 243/354 (68%), Positives = 299/354 (84%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE+LP  SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 45  WLDSIIKGDCVSALERLPDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 104

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 105 QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 164

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHETLIWAS   K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 165 NFRGRRFQNAHETLIWASRDQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 224

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 225 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 284

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RI +V+PLG  ELTV+TGKR EPRVAF  ++E GL++PG +L + +   +A V A
Sbjct: 285 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRA 344

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGTL +  E GSIHR+GA+V G + CNGW FW+FE+ G L  I+ LR ++R+++
Sbjct: 345 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQM 398


>gi|62289472|ref|YP_221265.1| modification methylase BabI [Brucella abortus bv. 1 str. 9-941]
 gi|82699397|ref|YP_413971.1| cytosine-N4-specific DNA-methyltransferase [Brucella melitensis
           biovar Abortus 2308]
 gi|254688783|ref|ZP_05152037.1| cytosine-N4-specific DNA-methyltransferase [Brucella abortus bv. 6
           str. 870]
 gi|254693266|ref|ZP_05155094.1| cytosine-N4-specific DNA-methyltransferase [Brucella abortus bv. 3
           str. Tulya]
 gi|254696912|ref|ZP_05158740.1| cytosine-N4-specific DNA-methyltransferase [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254729815|ref|ZP_05188393.1| cytosine-N4-specific DNA-methyltransferase [Brucella abortus bv. 4
           str. 292]
 gi|256257029|ref|ZP_05462565.1| cytosine-N4-specific DNA-methyltransferase [Brucella abortus bv. 9
           str. C68]
 gi|260545776|ref|ZP_05821517.1| modification methylase BabI [Brucella abortus NCTC 8038]
 gi|88913544|sp|Q2YMK2|MTB1_BRUA2 RecName: Full=Modification methylase BabI; Short=M.BabI; AltName:
           Full=Adenine-specific methyltransferase BabI; AltName:
           Full=DNA methyltransferase CcrM; AltName: Full=M.CcrMI
           ortholog
 gi|90109766|sp|P0C116|MTB1_BRUAB RecName: Full=Modification methylase BabI; Short=M.BabI; AltName:
           Full=Adenine-specific methyltransferase BabI; AltName:
           Full=DNA methyltransferase CcrM; AltName: Full=M.CcrMI
           ortholog
 gi|2305234|gb|AAB71351.1| adenine DNA methyltransferase [Brucella abortus]
 gi|62195604|gb|AAX73904.1| BabI, modification methylase BabI [Brucella abortus bv. 1 str.
           9-941]
 gi|82615498|emb|CAJ10472.1| SAM (and some other nucleotide) binding motif:Site-specific
           DNA-methyltransferase (cytosine-N4-specific):N-6
           Adenine-specific [Brucella melitensis biovar Abortus
           2308]
 gi|260097183|gb|EEW81058.1| modification methylase BabI [Brucella abortus NCTC 8038]
          Length = 377

 Score =  541 bits (1394), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 243/354 (68%), Positives = 299/354 (84%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE+LP  SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 19  WLDSIIKGDCVSALERLPDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 78

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 79  QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 138

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHETLIWAS   K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 139 NFRGRRFQNAHETLIWASREQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 198

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 199 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 258

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RI +V+PLG  ELTV+TGKR EPRVAF  ++E GL++PG +L + +   +A V A
Sbjct: 259 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRA 318

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGTL +  E GSIHR+GA+V G + CNGW FW+FE+ G L  I+ LR ++R+++
Sbjct: 319 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQM 372


>gi|23501392|ref|NP_697519.1| modification methylase BabI [Brucella suis 1330]
 gi|161618464|ref|YP_001592351.1| modification methylase HinfI [Brucella canis ATCC 23365]
 gi|163842773|ref|YP_001627177.1| modification methylase HinfI [Brucella suis ATCC 23445]
 gi|254701294|ref|ZP_05163122.1| modification methylase HinfI [Brucella suis bv. 5 str. 513]
 gi|254703839|ref|ZP_05165667.1| modification methylase HinfI [Brucella suis bv. 3 str. 686]
 gi|254707782|ref|ZP_05169610.1| modification methylase HinfI [Brucella pinnipedialis M163/99/10]
 gi|254709634|ref|ZP_05171445.1| modification methylase HinfI [Brucella pinnipedialis B2/94]
 gi|254712950|ref|ZP_05174761.1| modification methylase HinfI [Brucella ceti M644/93/1]
 gi|254716696|ref|ZP_05178507.1| modification methylase HinfI [Brucella ceti M13/05/1]
 gi|254718664|ref|ZP_05180475.1| modification methylase HinfI [Brucella sp. 83/13]
 gi|256031127|ref|ZP_05444741.1| modification methylase HinfI [Brucella pinnipedialis M292/94/1]
 gi|256159203|ref|ZP_05457014.1| modification methylase HinfI [Brucella ceti M490/95/1]
 gi|256254530|ref|ZP_05460066.1| modification methylase HinfI [Brucella ceti B1/94]
 gi|256368944|ref|YP_003106450.1| modification methylase BabI [Brucella microti CCM 4915]
 gi|260168258|ref|ZP_05755069.1| modification methylase BabI [Brucella sp. F5/99]
 gi|260566907|ref|ZP_05837377.1| modification methylase BabI [Brucella suis bv. 4 str. 40]
 gi|261218502|ref|ZP_05932783.1| modification methylase BabI [Brucella ceti M13/05/1]
 gi|261221708|ref|ZP_05935989.1| modification methylase BabI [Brucella ceti B1/94]
 gi|261315268|ref|ZP_05954465.1| modification methylase BabI [Brucella pinnipedialis M163/99/10]
 gi|261317167|ref|ZP_05956364.1| modification methylase BabI [Brucella pinnipedialis B2/94]
 gi|261320648|ref|ZP_05959845.1| modification methylase BabI [Brucella ceti M644/93/1]
 gi|261751836|ref|ZP_05995545.1| modification methylase BabI [Brucella suis bv. 5 str. 513]
 gi|261754491|ref|ZP_05998200.1| modification methylase BabI [Brucella suis bv. 3 str. 686]
 gi|261757722|ref|ZP_06001431.1| modification methylase BabI [Brucella sp. F5/99]
 gi|265983646|ref|ZP_06096381.1| modification methylase BabI [Brucella sp. 83/13]
 gi|265988205|ref|ZP_06100762.1| modification methylase BabI [Brucella pinnipedialis M292/94/1]
 gi|265997671|ref|ZP_06110228.1| modification methylase BabI [Brucella ceti M490/95/1]
 gi|294851866|ref|ZP_06792539.1| modification methylase BabI [Brucella sp. NVSL 07-0026]
 gi|306837787|ref|ZP_07470651.1| modification methylase BabI [Brucella sp. NF 2653]
 gi|306845119|ref|ZP_07477699.1| modification methylase BabI [Brucella sp. BO1]
 gi|81847171|sp|Q8G242|MTB1_BRUSU RecName: Full=Modification methylase BabI; Short=M.BabI; AltName:
           Full=Adenine-specific methyltransferase BabI; AltName:
           Full=DNA methyltransferase CcrM; AltName: Full=M.CcrMI
           ortholog
 gi|223635299|sp|B0CKH7|MTB1_BRUSI RecName: Full=Modification methylase BabI; Short=M.BabI; AltName:
           Full=Adenine-specific methyltransferase BabI; AltName:
           Full=DNA methyltransferase CcrM; AltName: Full=M.CcrMI
           ortholog
 gi|223635316|sp|A9M916|MTB1_BRUC2 RecName: Full=Modification methylase BabI; Short=M.BabI; AltName:
           Full=Adenine-specific methyltransferase BabI; AltName:
           Full=DNA methyltransferase CcrM; AltName: Full=M.CcrMI
           ortholog
 gi|23347288|gb|AAN29434.1| modification methylase BabI [Brucella suis 1330]
 gi|161335275|gb|ABX61580.1| Modification methylase HinfI [Brucella canis ATCC 23365]
 gi|163673496|gb|ABY37607.1| Modification methylase HinfI [Brucella suis ATCC 23445]
 gi|255999102|gb|ACU47501.1| modification methylase BabI [Brucella microti CCM 4915]
 gi|260156425|gb|EEW91505.1| modification methylase BabI [Brucella suis bv. 4 str. 40]
 gi|260920292|gb|EEX86945.1| modification methylase BabI [Brucella ceti B1/94]
 gi|260923591|gb|EEX90159.1| modification methylase BabI [Brucella ceti M13/05/1]
 gi|261293338|gb|EEX96834.1| modification methylase BabI [Brucella ceti M644/93/1]
 gi|261296390|gb|EEX99886.1| modification methylase BabI [Brucella pinnipedialis B2/94]
 gi|261304294|gb|EEY07791.1| modification methylase BabI [Brucella pinnipedialis M163/99/10]
 gi|261737706|gb|EEY25702.1| modification methylase BabI [Brucella sp. F5/99]
 gi|261741589|gb|EEY29515.1| modification methylase BabI [Brucella suis bv. 5 str. 513]
 gi|261744244|gb|EEY32170.1| modification methylase BabI [Brucella suis bv. 3 str. 686]
 gi|262552139|gb|EEZ08129.1| modification methylase BabI [Brucella ceti M490/95/1]
 gi|264660402|gb|EEZ30663.1| modification methylase BabI [Brucella pinnipedialis M292/94/1]
 gi|264662238|gb|EEZ32499.1| modification methylase BabI [Brucella sp. 83/13]
 gi|294820455|gb|EFG37454.1| modification methylase BabI [Brucella sp. NVSL 07-0026]
 gi|306274534|gb|EFM56329.1| modification methylase BabI [Brucella sp. BO1]
 gi|306407128|gb|EFM63343.1| modification methylase BabI [Brucella sp. NF 2653]
          Length = 377

 Score =  541 bits (1394), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 243/354 (68%), Positives = 299/354 (84%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE+LP  SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 19  WLDSIIKGDCVSALERLPDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 78

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 79  QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 138

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHETLIWAS   K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 139 NFRGRRFQNAHETLIWASRDQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 198

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 199 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 258

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RI +V+PLG  ELTV+TGKR EPRVAF  ++E GL++PG +L + +   +A V A
Sbjct: 259 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRA 318

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGTL +  E GSIHR+GA+V G + CNGW FW+FE+ G L  I+ LR ++R+++
Sbjct: 319 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQM 372


>gi|256060624|ref|ZP_05450790.1| modification methylase BabI [Brucella neotomae 5K33]
 gi|261324621|ref|ZP_05963818.1| modification methylase BabI [Brucella neotomae 5K33]
 gi|261300601|gb|EEY04098.1| modification methylase BabI [Brucella neotomae 5K33]
          Length = 377

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 243/354 (68%), Positives = 299/354 (84%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE+LP  SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 19  WLDSIIKGDCVSALERLPDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 78

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 79  QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 138

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHETLIWAS   K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 139 NFRGRRFQNAHETLIWASRDQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 198

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 199 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 258

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RI +V+PLG  ELTV+TGKR EPRVAF  ++E GL++PG +L + +   +A V A
Sbjct: 259 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGIVLCDERRRFAAIVRA 318

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGTL +  E GSIHR+GA+V G + CNGW FW+FE+ G L  I+ LR ++R+++
Sbjct: 319 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQM 372


>gi|163867893|ref|YP_001609097.1| adenine DNA methyltransferase protein CcrM [Bartonella tribocorum
           CIP 105476]
 gi|161017544|emb|CAK01102.1| adenine DNA methyltransferase protein CcrM [Bartonella tribocorum
           CIP 105476]
          Length = 378

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 243/358 (67%), Positives = 298/358 (83%)

Query: 15  SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           S   W++KI KG+ ++VLEKLP  SVD+IFADPPYNLQL G LYRPDHSLVDAV D+WD+
Sbjct: 15  SQMPWRNKIFKGDCVAVLEKLPKHSVDMIFADPPYNLQLEGALYRPDHSLVDAVDDAWDQ 74

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
           F SF AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDI+WRK+
Sbjct: 75  FESFAAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTALQDLGFWMLNDIIWRKN 134

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           NPMPNFRGRRFQNAHETLIWA    K K YTFNYDALKAANED+QMRSDWL P+C+G+ER
Sbjct: 135 NPMPNFRGRRFQNAHETLIWAVRDQKDKKYTFNYDALKAANEDLQMRSDWLFPLCTGAER 194

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L++  G KLHPTQKP+ALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK L R F+GIE +
Sbjct: 195 LKDDSGRKLHPTQKPQALLARIIMASSKPGDVILDPFFGSGTTGAVAKLLGRDFVGIERE 254

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISA 314
           QDYID A +RIA+V+PL   EL +L  K+ EPRVAFN L+E GL+ PG++L + +  +SA
Sbjct: 255 QDYIDAACERIAAVKPLAQPELAILDRKKAEPRVAFNSLLEAGLLYPGEVLYDRKKQVSA 314

Query: 315 TVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
            V ADGT++ G E GSIH +G K   S++CNGW FWY+E+ G L SI+ LR+++R ++
Sbjct: 315 IVRADGTIMHGGEAGSIHAMGRKAQDSQSCNGWTFWYYEENGRLKSIDHLRMIIRSQM 372


>gi|239831358|ref|ZP_04679687.1| Modification methylase HinfI [Ochrobactrum intermedium LMG 3301]
 gi|239823625|gb|EEQ95193.1| Modification methylase HinfI [Ochrobactrum intermedium LMG 3301]
          Length = 443

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 239/354 (67%), Positives = 299/354 (84%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ ++ LE+LP  SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 85  WLDSIIKGDCVAALERLPDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 144

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWL+ACRRVLKPNGT+WVIGSYHNIFR+G+ LQ+L FW+LNDI+WRK+NPMP
Sbjct: 145 QAYDAFTRAWLMACRRVLKPNGTIWVIGSYHNIFRVGSQLQDLGFWLLNDIIWRKTNPMP 204

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHETLIWAS   K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 205 NFRGRRFQNAHETLIWASRDQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 264

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 265 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQSYI 324

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RI +V+PLG  ELTV+TGKR EPRVAF  ++E GL++PG +L++ +   +A V A
Sbjct: 325 DAATARIDAVEPLGKAELTVMTGKRAEPRVAFTSVIEAGLLRPGTVLSDERRRFAAIVRA 384

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGTL +  E GSIHR+GAKV G + CNGW FW++E+ G L  I+ LR ++R ++
Sbjct: 385 DGTLAANGEAGSIHRMGAKVQGFDACNGWTFWHYEENGTLKPIDALRKVIRDQM 438


>gi|17987727|ref|NP_540361.1| adenine-specific methyltransferase [Brucella melitensis bv. 1 str.
           16M]
 gi|81851486|sp|Q8YFS6|MTB1_BRUME RecName: Full=Modification methylase BabI; Short=M.BabI; AltName:
           Full=Adenine-specific methyltransferase BabI; AltName:
           Full=DNA methyltransferase CcrM; AltName: Full=M.CcrMI
           ortholog
 gi|17983446|gb|AAL52625.1| adenine-specific methyltransferase [Brucella melitensis bv. 1 str.
           16M]
          Length = 403

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 242/354 (68%), Positives = 298/354 (84%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE+L   SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 45  WLDSIIKGDCVSALERLSDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 104

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 105 QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 164

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHETLIWAS   K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 165 NFRGRRFQNAHETLIWASRDQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 224

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 225 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 284

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RI +V+PLG  ELTV+TGKR EPRVAF  ++E GL++PG +L + +   +A V A
Sbjct: 285 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRA 344

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGTL +  E GSIHR+GA+V G + CNGW FW+FE+ G L  I+ LR ++R+++
Sbjct: 345 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQM 398


>gi|225852027|ref|YP_002732260.1| modification methylase HinfI [Brucella melitensis ATCC 23457]
 gi|256044204|ref|ZP_05447111.1| adenine-specific methyltransferase [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256113019|ref|ZP_05453916.1| adenine-specific methyltransferase [Brucella melitensis bv. 3 str.
           Ether]
 gi|256264469|ref|ZP_05467001.1| modification methylase BabI [Brucella melitensis bv. 2 str. 63/9]
 gi|260563563|ref|ZP_05834049.1| modification methylase BabI [Brucella melitensis bv. 1 str. 16M]
 gi|265990620|ref|ZP_06103177.1| modification methylase BabI [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994452|ref|ZP_06107009.1| modification methylase BabI [Brucella melitensis bv. 3 str. Ether]
 gi|225640392|gb|ACO00306.1| Modification methylase HinfI [Brucella melitensis ATCC 23457]
 gi|260153579|gb|EEW88671.1| modification methylase BabI [Brucella melitensis bv. 1 str. 16M]
 gi|262765565|gb|EEZ11354.1| modification methylase BabI [Brucella melitensis bv. 3 str. Ether]
 gi|263001404|gb|EEZ13979.1| modification methylase BabI [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094800|gb|EEZ18538.1| modification methylase BabI [Brucella melitensis bv. 2 str. 63/9]
          Length = 377

 Score =  538 bits (1387), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 242/354 (68%), Positives = 298/354 (84%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE+L   SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 19  WLDSIIKGDCVSALERLSDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 78

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 79  QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 138

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHETLIWAS   K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 139 NFRGRRFQNAHETLIWASRDQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 198

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 199 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 258

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RI +V+PLG  ELTV+TGKR EPRVAF  ++E GL++PG +L + +   +A V A
Sbjct: 259 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRA 318

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGTL +  E GSIHR+GA+V G + CNGW FW+FE+ G L  I+ LR ++R+++
Sbjct: 319 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQM 372


>gi|326408521|gb|ADZ65586.1| modification methylase HinfI [Brucella melitensis M28]
 gi|326538238|gb|ADZ86453.1| modification methylase HinfI [Brucella melitensis M5-90]
          Length = 368

 Score =  538 bits (1386), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 242/354 (68%), Positives = 298/354 (84%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE+L   SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 10  WLDSIIKGDCVSALERLSDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 69

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 70  QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 129

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHETLIWAS   K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 130 NFRGRRFQNAHETLIWASRDQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 189

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 190 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 249

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RI +V+PLG  ELTV+TGKR EPRVAF  ++E GL++PG +L + +   +A V A
Sbjct: 250 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRA 309

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGTL +  E GSIHR+GA+V G + CNGW FW+FE+ G L  I+ LR ++R+++
Sbjct: 310 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQM 363


>gi|153007950|ref|YP_001369165.1| DNA methylase N-4/N-6 domain-containing protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|223635322|sp|A6WWI2|MTB1_OCHA4 RecName: Full=Modification methylase BabI; Short=M.BabI; AltName:
           Full=Adenine-specific methyltransferase BabI; AltName:
           Full=DNA methyltransferase CcrM; AltName: Full=M.CcrMI
           ortholog
 gi|151559838|gb|ABS13336.1| DNA methylase N-4/N-6 domain protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 377

 Score =  538 bits (1386), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 238/354 (67%), Positives = 298/354 (84%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ ++ LE+LP  SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 19  WLDSIIKGDCVAALERLPDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 78

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWL+ACRRVLKPNGT+WVIGSYHNIFR+G+ LQ+L FW+LND++WRK+NPMP
Sbjct: 79  QAYDAFTRAWLMACRRVLKPNGTIWVIGSYHNIFRVGSQLQDLGFWLLNDVIWRKTNPMP 138

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHETLIWAS   K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 139 NFRGRRFQNAHETLIWASRDQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 198

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 199 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQSYI 258

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RI +V+PLG  ELTV+TGKR EPRVAF  ++E GL++PG +L + +   +A V A
Sbjct: 259 DAATARIDAVEPLGKAELTVMTGKRAEPRVAFTSVLEAGLLRPGTVLCDERRRFAAIVRA 318

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGTL +  E GSIHR+GAKV G + CNGW FW++E+ G L  I+ LR ++R ++
Sbjct: 319 DGTLAANGEAGSIHRIGAKVQGFDACNGWTFWHYEENGALKPIDALRKVIRDQM 372


>gi|49475250|ref|YP_033291.1| adenine DNA methyltransferase protein [Bartonella henselae str.
           Houston-1]
 gi|49238055|emb|CAF27262.1| Adenine DNA methyltransferase protein [Bartonella henselae str.
           Houston-1]
          Length = 378

 Score =  537 bits (1384), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 243/354 (68%), Positives = 296/354 (83%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W++KI+KG+ ++VLEKLP  SVD+IFADPPYNLQL G LYRPDHSLVDAV D+WD+F +F
Sbjct: 19  WRNKILKGDCVAVLEKLPKHSVDMIFADPPYNLQLEGALYRPDHSLVDAVDDAWDQFENF 78

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR+GT LQ+L FWILNDI+WRK+NPMP
Sbjct: 79  AAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRVGTALQDLGFWILNDIIWRKNNPMP 138

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHETLIWA    K K YTFNYDALKAANED+QMRSDWL P+C+G+ERL+++
Sbjct: 139 NFRGRRFQNAHETLIWAVRDQKDKKYTFNYDALKAANEDIQMRSDWLFPLCTGAERLKDE 198

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            G KLHPTQKP+ LL+RI+++S+KPGDIILDPFFGSGT+GAVAK L R F+GIE +Q YI
Sbjct: 199 AGRKLHPTQKPQPLLARIIIASSKPGDIILDPFFGSGTTGAVAKLLGRDFVGIEREQQYI 258

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D A +RIA ++PL   EL +L  K+ EPRVAFN L+E GLI PG++L + +  +SA V A
Sbjct: 259 DAAYERIAKIKPLNEPELAILDRKKAEPRVAFNSLLEAGLICPGEVLYDRKKQVSAIVRA 318

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGTL+ G E GSIH +G K    ++CNGW FWY+E+ G+L SIN LR+++R ++
Sbjct: 319 DGTLMYGGEAGSIHAMGRKAQDLQSCNGWTFWYYEEDGQLKSINELRMVIRSQM 372


>gi|49474012|ref|YP_032054.1| adenine DNA methyltransferase protein [Bartonella quintana str.
           Toulouse]
 gi|49239515|emb|CAF25872.1| Adenine DNA methyltransferase protein [Bartonella quintana str.
           Toulouse]
          Length = 378

 Score =  532 bits (1370), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 241/354 (68%), Positives = 295/354 (83%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W++KI+KG+ ++VLEKLP  SVD+IFADPPYNLQL+G LYRPDHSLVDAV D+WD+F SF
Sbjct: 19  WRNKILKGDCVAVLEKLPKHSVDVIFADPPYNLQLDGALYRPDHSLVDAVDDAWDQFESF 78

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            AYDAFTRAWLLACRRVLKP+GTLWVIGSYHNIFR+GT LQ+L FW+LNDI+WRK+NPMP
Sbjct: 79  AAYDAFTRAWLLACRRVLKPHGTLWVIGSYHNIFRVGTALQDLGFWMLNDIIWRKNNPMP 138

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHETLIWA    K K YTFNYDALKA NEDVQMRSDWL P+C+G+ERL+++
Sbjct: 139 NFRGRRFQNAHETLIWAVRDQKDKKYTFNYDALKAGNEDVQMRSDWLFPLCTGAERLKDE 198

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            G KLHPTQKP+ LL+RI+++S+KPGDIILDPFFGSGT+GAVAK L R F+GIE +Q YI
Sbjct: 199 AGRKLHPTQKPQTLLTRIIMASSKPGDIILDPFFGSGTTGAVAKLLGRDFVGIEREQQYI 258

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D A +RIA+V+PL   EL +L  K+ EPRVAFN L+E GL+ PG++L + +  +SA V A
Sbjct: 259 DAAYERIAAVEPLNKPELAILDRKKAEPRVAFNSLLEAGLLCPGEVLYDRKKRVSAIVRA 318

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGTL+   E GSIH +G K   S++CNGW FWY+E+ G L SI+ LR+++R  +
Sbjct: 319 DGTLMYSGEAGSIHAMGRKAQDSQSCNGWTFWYYEENGRLKSIDGLRMIIRSRM 372


>gi|163760352|ref|ZP_02167434.1| modification methylase BabI [Hoeflea phototrophica DFL-43]
 gi|162282303|gb|EDQ32592.1| modification methylase BabI [Hoeflea phototrophica DFL-43]
          Length = 377

 Score =  529 bits (1362), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 235/354 (66%), Positives = 291/354 (82%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ ++ LE LP  SVD+IFADPPYNLQL G L RPD S+VDAV D WD+F SF
Sbjct: 20  WLDTIIKGDCVAALEALPENSVDVIFADPPYNLQLGGDLARPDQSVVDAVNDHWDQFESF 79

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            AYDAFTRAWL+ACRRVLKPNGT+WVIGSYHNIFR+G+ LQ++ FW+LNDIVWRK+NPMP
Sbjct: 80  AAYDAFTRAWLMACRRVLKPNGTIWVIGSYHNIFRVGSQLQDIGFWLLNDIVWRKTNPMP 139

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHET+IWAS    AK YTFNY+A+KA+N+DVQMRSDWL PIC+G+ERL+  
Sbjct: 140 NFRGRRFQNAHETMIWASRDQNAKSYTFNYEAMKASNDDVQMRSDWLFPICTGAERLKGD 199

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           DG+K+HPTQKPEALL+R+L++S+KPGD++LDPFFGSGT+GAVA++L R F+GIE +QDYI
Sbjct: 200 DGKKVHPTQKPEALLARVLMASSKPGDVVLDPFFGSGTTGAVARRLGRHFVGIEREQDYI 259

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D A  RI +V+PLG  ELTV+TGKR EPRVAFN+L+E G ++PG +L +A+    A V A
Sbjct: 260 DAARARIDAVEPLGKNELTVMTGKRAEPRVAFNVLIEAGHVKPGDVLHDAKRKHQAIVRA 319

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGTL++  + GSIH+VGA V G + CNGW FW+ E    L  I+  R ++RKE+
Sbjct: 320 DGTLVANGQAGSIHKVGAHVQGFDACNGWTFWHLETSDGLTVIDEFRSVIRKEM 373


>gi|319406873|emb|CBI80508.1| adenine DNA methyltransferase protein CcrM [Bartonella sp. 1-1C]
          Length = 378

 Score =  528 bits (1359), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 237/355 (66%), Positives = 297/355 (83%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           +W++KI KG+ ++VLEKLP  SVD+IFADPPYNLQL G LYRPD+S VDAV D+WD+F S
Sbjct: 18  QWRNKIFKGDCVAVLEKLPKHSVDVIFADPPYNLQLEGVLYRPDYSRVDAVDDAWDQFES 77

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           F AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDI+WRK+NPM
Sbjct: 78  FAAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTALQDLGFWMLNDIIWRKNNPM 137

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PNFRGRRFQNAHETLIWA    K K YTFNYDALKAANED QMRSDWL P+C+G+ERL++
Sbjct: 138 PNFRGRRFQNAHETLIWAVRDQKDKKYTFNYDALKAANEDRQMRSDWLFPLCTGAERLKD 197

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K G KLHPTQKP++LL+RI+++S+KPGD+ILDPFFGSGT+GAVAK L R+F+GIE +Q Y
Sbjct: 198 KIGRKLHPTQKPQSLLARIIMASSKPGDVILDPFFGSGTTGAVAKLLGRNFVGIEREQHY 257

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
           ID A++RIA+V+PL   EL +L  K+ EPR+AF+ L++ GL+ PG IL + +  +SA V 
Sbjct: 258 IDAASERIAAVKPLAKSELEILKTKKAEPRIAFSSLLDAGLLYPGSILYDKKKEVSALVR 317

Query: 318 ADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           ADGT++   E GSIH +G K   S++CNGW FWY+E+ G L SI++LR++VR ++
Sbjct: 318 ADGTIMYDGEAGSIHMIGRKAQASQSCNGWTFWYYEENGLLKSIDSLRMMVRSQM 372


>gi|319898539|ref|YP_004158632.1| adenine DNA methyltransferase protein CcrM [Bartonella clarridgeiae
           73]
 gi|319402503|emb|CBI76046.1| adenine DNA methyltransferase protein CcrM [Bartonella clarridgeiae
           73]
          Length = 386

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 239/370 (64%), Positives = 300/370 (81%), Gaps = 4/370 (1%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
           QKN +  +       +W++KI KG+ ++VLEKLP  SVD+IFADPPYNLQL G LYRPDH
Sbjct: 15  QKNQVCTSSQT----QWRNKIFKGDCVAVLEKLPKHSVDMIFADPPYNLQLEGVLYRPDH 70

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
           S V+AV D+WD+F SF AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L 
Sbjct: 71  SRVNAVDDAWDQFESFSAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTALQDLG 130

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
           FW+LNDI+WRK+NPMPNFRGRRFQNAHETLIWA    K K YTFNY+ALKAANED QMRS
Sbjct: 131 FWMLNDIIWRKNNPMPNFRGRRFQNAHETLIWAVRDQKDKKYTFNYNALKAANEDRQMRS 190

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           DWL P+C+G+ERL++K G KLHPTQKP++LL+RI+++S+KPGD+ILDPFFGSGT+GAVAK
Sbjct: 191 DWLFPLCTGAERLKDKVGRKLHPTQKPQSLLARIIIASSKPGDVILDPFFGSGTTGAVAK 250

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPG 302
              R F+GIE +Q YID A +RIA+++PL   EL +L  K+TEPRVAF+ L++ GL+ PG
Sbjct: 251 LFGRDFVGIEREQHYIDAACERIAAIKPLAESELEILKTKKTEPRVAFSSLLDLGLLYPG 310

Query: 303 QILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSIN 362
            +L + +  ISA V ADGT++ G E GSIH +G K   S++CNGW FWY+E+ G L SI+
Sbjct: 311 SVLYDKKKEISAIVRADGTIMYGGEAGSIHMIGRKAQASQSCNGWTFWYYEENGLLKSID 370

Query: 363 TLRILVRKEL 372
            LR+++R ++
Sbjct: 371 DLRMMIRSQM 380


>gi|319408230|emb|CBI81883.1| adenine DNA methyltransferase protein CcrM [Bartonella
           schoenbuchensis R1]
          Length = 378

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 239/355 (67%), Positives = 294/355 (82%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           +W +KI+KG+ +++LEKLP  SVD+IFADPPYNLQL   LYRPD+S VDAV D+WD+F +
Sbjct: 18  QWCNKILKGDCVAMLEKLPKHSVDMIFADPPYNLQLENTLYRPDYSRVDAVNDAWDQFEN 77

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           F AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR+GT LQ+L FW+LNDI+WRK+NPM
Sbjct: 78  FAAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRVGTALQDLGFWLLNDIIWRKNNPM 137

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PNFRGRRFQNAHETLIWA    K K YTFNY ALKAANEDVQMRSDWL P+C+G+ERL++
Sbjct: 138 PNFRGRRFQNAHETLIWAVRDQKDKKYTFNYKALKAANEDVQMRSDWLFPLCTGAERLKD 197

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           + G KLHPTQKP+ LL+RI+++S+KPGDIILDPFFGSGT+GAVAK L R+F+GIE +Q Y
Sbjct: 198 EIGRKLHPTQKPQTLLARIIMASSKPGDIILDPFFGSGTTGAVAKLLGRNFVGIEREQSY 257

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
           ID A +RIA V+PL   ELTVL  K+ EPRVAF  L+E GL+ PG IL + +  +SA V 
Sbjct: 258 IDAAHERIAMVKPLAESELTVLANKKAEPRVAFTNLLEAGLLHPGMILYDRKKRVSAIVK 317

Query: 318 ADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           ADGT++ G E GSIH +G K   S++CNGW FWY+E+ G+L SI+ LR+++R ++
Sbjct: 318 ADGTIMYGGEAGSIHMMGRKAQASQSCNGWTFWYYEEDGQLKSIDDLRMVIRSQM 372


>gi|121602378|ref|YP_988732.1| modification methylase CcrMI [Bartonella bacilliformis KC583]
 gi|120614555|gb|ABM45156.1| modification methylase CcrMI [Bartonella bacilliformis KC583]
          Length = 378

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 239/361 (66%), Positives = 298/361 (82%)

Query: 12  NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
           N  S   W ++I KG+ ++VLEKLP  SVD+IFADPPYNLQL G LYRPDHSLVDAV D+
Sbjct: 12  NSPSQIPWCNQIFKGDCVAVLEKLPKHSVDMIFADPPYNLQLEGVLYRPDHSLVDAVDDA 71

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           WD+F SF AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR+GT LQ+L FW+LNDI+W
Sbjct: 72  WDQFESFAAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRVGTTLQDLGFWVLNDIIW 131

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
           RK+NPMPNFRGRRFQNAHETLIWA    K K YTFNYD+LKAAN+DVQMRSDWL P+C+G
Sbjct: 132 RKNNPMPNFRGRRFQNAHETLIWAVRDQKDKKYTFNYDSLKAANDDVQMRSDWLFPLCTG 191

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           +ERL+++ G+KLHPTQKP+ALL+RI+++++K GD+ILDPFFGSGT+GAVAK L R+F+GI
Sbjct: 192 AERLKDEAGDKLHPTQKPQALLARIIMAASKSGDVILDPFFGSGTTGAVAKLLGRNFVGI 251

Query: 252 EMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
           E +Q YID A +RIA+V+PL   EL ++ GK+ EPRVAF  L+E GL+ PG +L + +  
Sbjct: 252 EREQRYIDAAHERIAAVKPLAKSELEIIKGKKAEPRVAFINLLEAGLLCPGSVLYDKKKR 311

Query: 312 ISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           +SA V ADGT++   E GSIH +G KV  S++CNGW FWY+E  G+L SI+ LR+++R +
Sbjct: 312 VSAIVRADGTIMCDNEAGSIHAIGRKVQVSQSCNGWTFWYYEDNGKLKSIDDLRMVIRSQ 371

Query: 372 L 372
           +
Sbjct: 372 I 372


>gi|319405302|emb|CBI78916.1| adenine DNA methyltransferase protein CcrM [Bartonella sp. AR 15-3]
          Length = 378

 Score =  525 bits (1353), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 239/355 (67%), Positives = 293/355 (82%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           +W++KI KG+ ++VLEKLP  SVD+IFADPPYNLQL G LYRPD+S VDAV D+WD+F S
Sbjct: 18  QWRNKIFKGDCVAVLEKLPKHSVDVIFADPPYNLQLEGVLYRPDYSRVDAVDDAWDQFES 77

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           F AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDI+WRK+NPM
Sbjct: 78  FSAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTALQDLGFWMLNDIIWRKNNPM 137

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PNFRGRRFQNAHETLIWA    K K YTFNYDALKAANED QMRSDWL P+C+G+ERL++
Sbjct: 138 PNFRGRRFQNAHETLIWAVRDQKDKKYTFNYDALKAANEDRQMRSDWLFPLCTGAERLKD 197

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K G KLHPTQKP++LL+RI+++S+KPGD+ILDPFFGSGT+GAVAK L R F+GIE +Q Y
Sbjct: 198 KVGRKLHPTQKPQSLLARIIMASSKPGDVILDPFFGSGTTGAVAKLLGRDFVGIEREQHY 257

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
           ID A +RIA V+PL   EL +L  KRTEPRVAF+ L++  L+ PG IL + +  ISA V 
Sbjct: 258 IDAACERIAVVKPLAKSELEILKTKRTEPRVAFSSLLDARLLYPGSILYDKKKEISAIVR 317

Query: 318 ADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           ADGT++   E GSIH +G K   S++CNGW FWY+E+ G L SI+ LR+++R ++
Sbjct: 318 ADGTIMYDGEAGSIHMIGRKAQASQSCNGWTFWYYEENGLLKSIDDLRMMIRSQM 372


>gi|319784679|ref|YP_004144155.1| DNA methylase N-4/N-6 domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170567|gb|ADV14105.1| DNA methylase N-4/N-6 domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 377

 Score =  524 bits (1350), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 235/352 (66%), Positives = 291/352 (82%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           EW D I+KG+ ++ L++LP KS+D+IFADPPYNLQL+G L+RPD S VDAV D WD+F S
Sbjct: 18  EWLDTILKGDCVAALDRLPEKSIDVIFADPPYNLQLDGDLHRPDQSKVDAVDDDWDQFES 77

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           FEAYDAFTRAWLLA RRVLKPNGT+WVIGSYHNIFR+G  +Q+L FWILND+VWRK+NPM
Sbjct: 78  FEAYDAFTRAWLLAARRVLKPNGTIWVIGSYHNIFRVGAKMQDLGFWILNDVVWRKTNPM 137

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PNFRGRRFQNAHET+IWA+   K KGYTFNY+A+KA+N+D+QMRSDWL PIC+G ERL+N
Sbjct: 138 PNFRGRRFQNAHETMIWATRDQKGKGYTFNYEAMKASNDDIQMRSDWLFPICTGGERLKN 197

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
            +G+KLHPTQKPEALL+RI+++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +Q Y
Sbjct: 198 DNGDKLHPTQKPEALLARIMMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQAY 257

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
           ID A +RI +V+PL   +LTVLTGKR EPRVAF  L++ GL+ PG  L +A+   +A V 
Sbjct: 258 IDAANERIDAVRPLDGADLTVLTGKRAEPRVAFVSLIDTGLMMPGATLYDAKKRWAAKVR 317

Query: 318 ADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVR 369
           ADGT+  G   GSIH+VGA+V G + CNGW FW++E+ G L  I+ LR + R
Sbjct: 318 ADGTVAIGDSAGSIHKVGAEVQGLDACNGWTFWHYERSGGLTPIDELRRIAR 369


>gi|260460279|ref|ZP_05808531.1| DNA methylase N-4/N-6 domain protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259033924|gb|EEW35183.1| DNA methylase N-4/N-6 domain protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 377

 Score =  524 bits (1350), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 236/352 (67%), Positives = 292/352 (82%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           EW D I+KG+ ++ L++LP KS+D+IFADPPYNLQL+G L+RPD S VDAV D WD+F S
Sbjct: 18  EWLDTILKGDCVAALDRLPEKSIDVIFADPPYNLQLDGDLHRPDQSKVDAVDDDWDRFES 77

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           FEAYDAFTRAWLLA RRVLKPNGT+WVIGSYHNIFR+G  +Q+L FWILND+VWRK+NPM
Sbjct: 78  FEAYDAFTRAWLLAARRVLKPNGTIWVIGSYHNIFRVGAKMQDLGFWILNDVVWRKTNPM 137

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PNFRGRRFQNAHET+IWAS   K KGYTFNY+ALKA+N+D+QMRSDWL PIC+G ERL+N
Sbjct: 138 PNFRGRRFQNAHETMIWASRDQKGKGYTFNYEALKASNDDIQMRSDWLFPICTGGERLKN 197

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
            +G+KLHPTQKPEALL+RI+++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +Q Y
Sbjct: 198 DNGDKLHPTQKPEALLARIMMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQAY 257

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
           ID A +RI +V+PL + +LTVLTGKR EPRVAF  L++ GL+ PG  L +A+   +A V 
Sbjct: 258 IDAANERIDAVRPLEDADLTVLTGKRAEPRVAFVSLIDTGLMVPGATLYDAKKRWAAKVR 317

Query: 318 ADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVR 369
           ADGT+  G   GSIH++GA+V G + CNGW FW++E+ G L  I+ LR + R
Sbjct: 318 ADGTVAIGDSAGSIHKIGAEVQGLDACNGWTFWHYERSGGLTPIDELRRIAR 369


>gi|319403861|emb|CBI77447.1| adenine DNA methyltransferase protein CcrM [Bartonella rochalimae
           ATCC BAA-1498]
          Length = 378

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 234/355 (65%), Positives = 294/355 (82%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           +W++KI KG+ ++VLEKLP  SVD+IFADPPYNLQL   LYRPD+S VDAV D+WD+F S
Sbjct: 18  QWRNKIFKGDCVAVLEKLPKHSVDVIFADPPYNLQLESVLYRPDYSRVDAVDDAWDQFES 77

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           F AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDI+WRK+NPM
Sbjct: 78  FAAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTALQDLGFWMLNDIIWRKNNPM 137

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PNFRGRRFQNAHETLIWA    K K Y FNYDALKAANED QMRSDWL P+C+G+ERL++
Sbjct: 138 PNFRGRRFQNAHETLIWAVRDQKDKKYIFNYDALKAANEDRQMRSDWLFPLCTGAERLKD 197

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K G KLHPTQKP++LL+RI+++S+KPGD+ILDPFFGSGT+GAVAK L R F+GIE +Q Y
Sbjct: 198 KIGRKLHPTQKPQSLLARIIMASSKPGDVILDPFFGSGTTGAVAKLLGRDFVGIEREQHY 257

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
           ID A++RIA+V+PL   EL +L  K+ EPR+AF+ L++ GL+ PG IL + +  +SA V 
Sbjct: 258 IDAASERIAAVKPLAKSELEILKTKKAEPRIAFSSLLDAGLLYPGSILYDKKKEVSALVR 317

Query: 318 ADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           ADGT++   E GSIH +G K   S++CNGW FWY+E+ G L SI++LR+++R ++
Sbjct: 318 ADGTIMYDGEAGSIHMIGRKAQASQSCNGWTFWYYEENGLLKSIDSLRMMIRSQM 372


>gi|13476248|ref|NP_107818.1| adenine DNA methyltransferase [Mesorhizobium loti MAFF303099]
 gi|14027009|dbj|BAB53963.1| adenine DNA methyltransferase [Mesorhizobium loti MAFF303099]
          Length = 377

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 235/352 (66%), Positives = 291/352 (82%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           EW D I+KG+ ++ L++LP KSVD+IFADPPYNLQL+G L+RPD S VDAV D WD+F +
Sbjct: 18  EWLDTILKGDCVAALDRLPEKSVDVIFADPPYNLQLDGDLHRPDQSKVDAVDDHWDQFEN 77

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           FEAYDAFTRAWLLA RRVLKPNGT+WVIGSYHNIFR+G  +Q+L FWILND+VWRK+NPM
Sbjct: 78  FEAYDAFTRAWLLAARRVLKPNGTIWVIGSYHNIFRVGAKMQDLGFWILNDVVWRKTNPM 137

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PNFRGRRFQNAHET+IWAS   K KGYTFNY+ALKA+N+D+QMRSDWL PIC+G ERL+N
Sbjct: 138 PNFRGRRFQNAHETMIWASRDQKGKGYTFNYEALKASNDDIQMRSDWLFPICTGGERLKN 197

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
            +G+KLHPTQKPEALL+RI+++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +Q Y
Sbjct: 198 DNGDKLHPTQKPEALLARIMMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQAY 257

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
           ID A +RI +V+PL + +LTVLTGKR EPRVAF  L++ GL+ PG  L +A+   +  V 
Sbjct: 258 IDAANERIDAVRPLEDADLTVLTGKRAEPRVAFVSLIDTGLMTPGVTLYDAKKRWAVKVR 317

Query: 318 ADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVR 369
           ADGT+  G   GSIH++GA+V G + CNGW FW++E+ G L  I+ LR + R
Sbjct: 318 ADGTVAIGDSAGSIHKIGAEVQGLDACNGWTFWHYERSGGLTPIDELRRIAR 369


>gi|114707681|ref|ZP_01440576.1| adenine DNA methyltransferase [Fulvimarina pelagi HTCC2506]
 gi|114536925|gb|EAU40054.1| adenine DNA methyltransferase [Fulvimarina pelagi HTCC2506]
          Length = 378

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 233/372 (62%), Positives = 296/372 (79%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           M +   + ++       +W+++I++G+ ++ +E+LPA+SVD+IFADPPYNLQL G L RP
Sbjct: 1   MKRSGPVLVHSQPFPEIDWRNQILQGHCVTEMERLPAESVDVIFADPPYNLQLGGDLMRP 60

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           DHS VDAV D+WD+F SF+AYDAFTRAWLLA RRVLKPNGTLWVIGSYHNIFR+G  LQ+
Sbjct: 61  DHSKVDAVDDAWDQFESFQAYDAFTRAWLLAARRVLKPNGTLWVIGSYHNIFRVGASLQD 120

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           L +WILNDIVWRK+NPMPNFRG+RFQNAHETLIWAS   KAK YTFNY+ALKA+N+DVQM
Sbjct: 121 LGYWILNDIVWRKTNPMPNFRGKRFQNAHETLIWASRDAKAKSYTFNYEALKASNDDVQM 180

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           RSDWL PICSG ERL+N+DG K HPTQKPEALL+RIL++STKPGD++LDPFFG+GT+GAV
Sbjct: 181 RSDWLFPICSGGERLKNEDGAKAHPTQKPEALLARILLASTKPGDVVLDPFFGTGTTGAV 240

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           AK+L R F+GIE +++Y+ IA +RIA V+PL + +L +  GKR EPRV F  LVE GL+ 
Sbjct: 241 AKRLGRDFVGIEREEEYVKIAQQRIADVEPLDDDDLKMAAGKRAEPRVPFASLVEAGLVT 300

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
           PG  LT+++    A V ADGT+  G +  SIHR+GA+V G + CNGW FW+ ++   L  
Sbjct: 301 PGTELTDSKRRYRARVRADGTIAVGDDAASIHRIGARVQGLDACNGWTFWHVKEGKNLTP 360

Query: 361 INTLRILVRKEL 372
           I+ LR L R+ +
Sbjct: 361 IDELRQLARQRM 372


>gi|306842226|ref|ZP_07474890.1| Modification methylase HinfI [Brucella sp. BO2]
 gi|306287668|gb|EFM59112.1| Modification methylase HinfI [Brucella sp. BO2]
          Length = 338

 Score =  514 bits (1325), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 230/333 (69%), Positives = 284/333 (85%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99
           +D+IFADPPYNLQL G L+RPD S+V AV D WD+F SF+AYDAFTRAWLLACRRVLKPN
Sbjct: 1   MDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESFQAYDAFTRAWLLACRRVLKPN 60

Query: 100 GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
           GT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMPNFRGRRFQNAHETLIWAS   
Sbjct: 61  GTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMPNFRGRRFQNAHETLIWASRDQ 120

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVS 219
           K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL++++G+K+HPTQKPEALL+RI+++
Sbjct: 121 KGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDENGDKVHPTQKPEALLARIMMA 180

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
           S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YID AT RI +V+PLG  ELTV+
Sbjct: 181 SSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYIDAATARINAVEPLGKAELTVM 240

Query: 280 TGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVS 339
           TGKR EPRVAF  ++E GL++PG +L + +   +A V ADGTL +  E GSIHR+GA+V 
Sbjct: 241 TGKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRADGTLTANGEAGSIHRIGARVQ 300

Query: 340 GSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           G + CNGW FW+FE+ G L  I+ LR ++R+++
Sbjct: 301 GFDACNGWTFWHFEENGVLKPIDALRKIIREQM 333


>gi|304393522|ref|ZP_07375450.1| modification methylase BabI [Ahrensia sp. R2A130]
 gi|303294529|gb|EFL88901.1| modification methylase BabI [Ahrensia sp. R2A130]
          Length = 416

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 225/352 (63%), Positives = 280/352 (79%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D II+G+ ++ + +LPA SVD+IFADPPYNLQL G+L RPD S VDA  D WD+F +F A
Sbjct: 61  DSIIQGDCVAAMSRLPANSVDVIFADPPYNLQLGGELSRPDQSTVDACDDHWDQFDTFAA 120

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YDAF+RAWL A RRVLKPNGT+WVIGSYHNIFR+GTMLQ++ FWILNDIVWRK+NPMPNF
Sbjct: 121 YDAFSRAWLTAARRVLKPNGTIWVIGSYHNIFRVGTMLQDMQFWILNDIVWRKTNPMPNF 180

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RGRRF NAHET+IWASP PK KGYTFNYDALK AN+DVQMRSDW+ PIC+G ERL+ +DG
Sbjct: 181 RGRRFTNAHETMIWASPDPKGKGYTFNYDALKMANDDVQMRSDWVFPICTGGERLKGEDG 240

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K+HPTQKPEALL R+L+SSTKPGD++LDPFFG+GT+GAVAK+L R FIGIE + DYI+ 
Sbjct: 241 KKVHPTQKPEALLHRVLMSSTKPGDVVLDPFFGTGTTGAVAKRLGRHFIGIERETDYIEA 300

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  RI +++P    +LTV TGKR  PRV F  ++E GL+  G +LT+++    A + ADG
Sbjct: 301 ARARIDAIEPGQAAQLTVTTGKRALPRVPFGAIIENGLLSAGDVLTDSKRRWKAMIRADG 360

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           +LI   E  SIH+ GA+V G + CNGW FW+ E+ G+L  I+ LR + R  +
Sbjct: 361 SLIESGEAASIHKTGARVQGLDACNGWTFWHVEREGKLVCIDDLRAIYRDAM 412


>gi|110633120|ref|YP_673328.1| DNA adenine methylase CcrM [Mesorhizobium sp. BNC1]
 gi|110284104|gb|ABG62163.1| DNA adenine methylase CcrM [Chelativorans sp. BNC1]
          Length = 372

 Score =  505 bits (1301), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 234/355 (65%), Positives = 288/355 (81%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           +W D I+KG+ ++ LE+LP KSVD+IFADPPYNLQL G L+RPD SLVDAV D WD+F S
Sbjct: 18  DWLDDILKGDCVAALERLPEKSVDVIFADPPYNLQLEGALHRPDQSLVDAVDDEWDQFES 77

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           F AYDAFTRAWLLA RRVLKPNGT+WVIGSYHNIFR+G ++Q+L FWILNDIVWRK+NPM
Sbjct: 78  FAAYDAFTRAWLLAARRVLKPNGTVWVIGSYHNIFRVGAIMQDLGFWILNDIVWRKTNPM 137

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PNFRGRRFQNAHET+IWAS    AKGYTFNY+A+KAAN+D+QMRSDWL PIC+G ERL++
Sbjct: 138 PNFRGRRFQNAHETMIWASRDRNAKGYTFNYEAMKAANDDLQMRSDWLFPICTGKERLKD 197

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
            DG K+HPTQKPEALL+R+L+SSTKPGD++LDPFFGSGT+GAVAK+L R F+GIE   DY
Sbjct: 198 ADGNKVHPTQKPEALLARVLLSSTKPGDVVLDPFFGSGTTGAVAKRLGRHFVGIERDPDY 257

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
           I  A +RIA+V+PL    L  +  KR EPR+AF  L++ GL++PG  L +++   +A V 
Sbjct: 258 IAAARERIAAVEPLDQAALAPMAAKREEPRIAFASLLDSGLVKPGMQLYDSKRRWAAHVR 317

Query: 318 ADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           ADGTL  G E GSIHR+GA+V G + CNGW FW++E+ G L  I+ LR + R+ L
Sbjct: 318 ADGTLAVGPETGSIHRLGARVQGLDACNGWTFWHYEEKGALKPIDELRQVARRGL 372


>gi|154245121|ref|YP_001416079.1| DNA methylase N-4/N-6 domain-containing protein [Xanthobacter
           autotrophicus Py2]
 gi|154159206|gb|ABS66422.1| DNA methylase N-4/N-6 domain protein [Xanthobacter autotrophicus
           Py2]
          Length = 389

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 235/354 (66%), Positives = 280/354 (79%), Gaps = 3/354 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+I+ G+SI ++  LPA SVDL+FADPPYNLQL G+L RPD SLVDAV D WD+F SF  
Sbjct: 32  DQILLGDSIQMMAGLPAGSVDLVFADPPYNLQLGGELKRPDESLVDAVDDDWDRFDSFAT 91

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YDAFTRAWLLA RR LKPNGTL+VIGSYHNIFR+G M+Q+L FWILNDIVWRK+NPMPNF
Sbjct: 92  YDAFTRAWLLAARRALKPNGTLFVIGSYHNIFRVGAMMQDLGFWILNDIVWRKANPMPNF 151

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RGRRF NAHETLIWA+ S  AK YTFNY+ALKA NEDVQ+RSDWL P+C+G ERL++  G
Sbjct: 152 RGRRFTNAHETLIWAARSADAK-YTFNYEALKAGNEDVQVRSDWLFPLCTGQERLKDGAG 210

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +KLHPTQKPEALL+R+L+S+TKPGD++LDPFFGSGT+GAVAK+LRRSFIGIE ++ Y   
Sbjct: 211 KKLHPTQKPEALLARVLLSATKPGDVVLDPFFGSGTTGAVAKRLRRSFIGIEREEAYAQA 270

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  RI +V+PL    L      R  PRVAF++LVERGL+ PG  LT+A+G   A V ADG
Sbjct: 271 ARARIDAVEPLPEDALVAPPSAREAPRVAFSVLVERGLVTPGAELTDAKGRFRAVVRADG 330

Query: 321 T--LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           T  L  G  +GSIHRVGA   G+E CNGW FW+ E+ G  H I+TLR  +R E+
Sbjct: 331 TLALAGGQNVGSIHRVGALAQGAEACNGWTFWHVEEQGRRHPIDTLRARLRAEM 384


>gi|298294362|ref|YP_003696301.1| DNA methylase N-4/N-6 domain protein [Starkeya novella DSM 506]
 gi|296930873|gb|ADH91682.1| DNA methylase N-4/N-6 domain protein [Starkeya novella DSM 506]
          Length = 395

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 230/357 (64%), Positives = 282/357 (78%), Gaps = 5/357 (1%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I++G+ ++ L KLPA+SVD++FADPPYNLQL G+L RPD S VDAV D+WDKF SF+A
Sbjct: 34  DTILRGDCVAELSKLPARSVDMVFADPPYNLQLQGELKRPDDSRVDAVDDAWDKFESFQA 93

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YDAFTRAWLLA RRVLKP GTLWVIGSYHNIFR+G +LQ+L+FWILNDIVWRK+NPMPNF
Sbjct: 94  YDAFTRAWLLAVRRVLKPTGTLWVIGSYHNIFRVGALLQDLDFWILNDIVWRKTNPMPNF 153

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RGRRF NAHETLIWA+  P AKGYTFNY+ALKAANEDVQMRSDWL PICSG ERL+++DG
Sbjct: 154 RGRRFTNAHETLIWAAREPGAKGYTFNYEALKAANEDVQMRSDWLFPICSGGERLKDEDG 213

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            KLHPTQKPEALL+R+++S++KPGD++LDPF GSGT+ AVA++L R F+GIE    Y D 
Sbjct: 214 RKLHPTQKPEALLARVILSASKPGDVVLDPFLGSGTTAAVARRLGRHFVGIERDPTYADA 273

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  RI +V+PL ++ L +    R  PRVAFN L+ERGL+ PG +LT+A+    A V ADG
Sbjct: 274 AQARIDAVEPLPDLALALAPTAREAPRVAFNSLIERGLLAPGTLLTDAKARTRALVRADG 333

Query: 321 TLISGT-----ELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           TL   T     ++GSIHR GA   G + CNGW +W+ E    L  I+TLR ++R E+
Sbjct: 334 TLSLETAPGLGQIGSIHRAGALAQGLDACNGWTYWHVETREGLKPIDTLRAVMRSEM 390


>gi|328544989|ref|YP_004305098.1| adenine dna methyltransferase protein [polymorphum gilvum
           SL003B-26A1]
 gi|326414731|gb|ADZ71794.1| Adenine dna methyltransferase protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 379

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 221/354 (62%), Positives = 281/354 (79%), Gaps = 1/354 (0%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W + I+KG+ ++ LEKLP++SVDL+FADPPYNLQL G L+RPD S VDA  D+WD+F SF
Sbjct: 25  WLNTILKGDCVAALEKLPSRSVDLVFADPPYNLQLGGDLHRPDQSRVDACDDAWDQFDSF 84

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           EAYDAFTRAWLLA RRVLK +G++WVIGSYHNIFR+G +LQ+L FWILND+VW KSNPMP
Sbjct: 85  EAYDAFTRAWLLAVRRVLKKDGSIWVIGSYHNIFRVGAILQDLGFWILNDVVWVKSNPMP 144

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRG+R  NAHET+IWA+PS  A+ YTFNYDALKA N+D+QMRSDW +P+C+G+ERL++ 
Sbjct: 145 NFRGKRLTNAHETMIWAAPSKDAR-YTFNYDALKAFNDDLQMRSDWHLPLCTGAERLKDG 203

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            G+K+HPTQKPEALL R+L +S+KP DI+LDPFFG+GT+GAVA+KL R+F+G+E +Q YI
Sbjct: 204 GGQKVHPTQKPEALLYRVLTASSKPDDIVLDPFFGTGTTGAVARKLGRNFVGVEREQAYI 263

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RIA+V+P     L +  GKR EPR+ F  L+E GL+QPG  LT ++G   A V A
Sbjct: 264 DAATARIAAVEPASGACLDMQKGKRAEPRIPFGSLLEAGLLQPGATLTCSKGRHKAIVRA 323

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DG+L S    GSIH+VGA V G++ CNGW FW+ E+ G    I+ LR ++R  L
Sbjct: 324 DGSLASADHTGSIHKVGALVQGADACNGWTFWHIEEDGTRAPIDALRQIIRSRL 377


>gi|39934101|ref|NP_946377.1| DNA methylase N-4/N-6 [Rhodopseudomonas palustris CGA009]
 gi|192289628|ref|YP_001990233.1| DNA methylase N-4/N-6 domain protein [Rhodopseudomonas palustris
           TIE-1]
 gi|39647949|emb|CAE26469.1| possible adenine DNA methyltransferase [Rhodopseudomonas palustris
           CGA009]
 gi|192283377|gb|ACE99757.1| DNA methylase N-4/N-6 domain protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 376

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 222/351 (63%), Positives = 275/351 (78%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +II G+ I+ +EKLP KSVDL+FADPPYNLQL G L RPD S VDAV D WDKF+SF AY
Sbjct: 24  RIIVGDCIAEMEKLPPKSVDLVFADPPYNLQLKGALKRPDESEVDAVDDDWDKFASFAAY 83

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTRAWLLA RR++KP+ TLWVIGSYHNIFR+GT++Q+L FW+LNDIVWRKSNPMPNFR
Sbjct: 84  DNFTRAWLLAARRIMKPSATLWVIGSYHNIFRVGTIMQDLGFWVLNDIVWRKSNPMPNFR 143

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           GRRF NAHET+IWA+    AKGYTFNYDALKAANEDVQ RSDWLIP+C+G ERL+ KDG+
Sbjct: 144 GRRFTNAHETMIWAARDENAKGYTFNYDALKAANEDVQARSDWLIPLCTGDERLKGKDGK 203

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+HPTQKPE LL+R+L+SS+KPGD+++DPF G+GT+GAVAK+LRR++IGIE  + Y + A
Sbjct: 204 KVHPTQKPEQLLARVLLSSSKPGDLVVDPFNGTGTTGAVAKRLRRNYIGIERDKTYAEAA 263

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
             RI S++PL +  L      R  PRVAF+ L+ERG+I PG  L +++    A V ADG 
Sbjct: 264 RARIDSIEPLPDDTLKPFLTARDAPRVAFSELIERGMISPGARLVDSKKRHGALVRADGA 323

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           ++ G ++GSIHR+GA   GSE CNGW FW+ E    L  I+ LR  +R  +
Sbjct: 324 IMLGDKVGSIHRIGAVAQGSEACNGWTFWHVETSKGLRLIDELRAEIRSTM 374


>gi|90420098|ref|ZP_01228006.1| DNA modification methylase BabI [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335432|gb|EAS49182.1| DNA modification methylase BabI [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 379

 Score =  485 bits (1248), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 228/354 (64%), Positives = 280/354 (79%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D+I KG+ +S +  LP  SVD+IFADPPYNLQL G L+RPD S VDAV D WD+F SF
Sbjct: 21  WLDRIHKGHCVSQMAALPENSVDVIFADPPYNLQLGGDLHRPDQSKVDAVDDHWDQFESF 80

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWLLA RRVLKPNGT+WVIGSYHNIFR+G M+Q+L FW+LND+VWRK+NPMP
Sbjct: 81  QAYDAFTRAWLLAARRVLKPNGTIWVIGSYHNIFRVGAMMQDLGFWMLNDVVWRKTNPMP 140

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHET+IWAS    AKGYTFNYDA+K+AN+DVQMRSDWL PICSG ERL++ 
Sbjct: 141 NFRGRRFQNAHETMIWASRDANAKGYTFNYDAMKSANDDVQMRSDWLFPICSGGERLKDA 200

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G K HPTQKPEALL+R+L+SSTKPGD++LDPFFG+GT+GAVAK+L R ++GIE +  YI
Sbjct: 201 EGRKTHPTQKPEALLARVLLSSTKPGDVVLDPFFGTGTTGAVAKRLGRHYVGIEREDVYI 260

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + A  RIA+V+ L    L V  GKR EPR+ F  L+E GL+QPG  LT+A+   +A V A
Sbjct: 261 EAAEARIAAVEALDPTVLKVSAGKRAEPRIPFASLLEAGLVQPGTELTDAKRRWTARVRA 320

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DGT+  G +  SIHR+GAKV G + CNGW FW+ +    L  I+TLR  +R ++
Sbjct: 321 DGTIAIGEDAASIHRIGAKVQGLDACNGWTFWHIDSKKGLTPIDTLRQTMRDQM 374


>gi|316932563|ref|YP_004107545.1| DNA methylase N-4/N-6 domain-containing protein [Rhodopseudomonas
           palustris DX-1]
 gi|315600277|gb|ADU42812.1| DNA methylase N-4/N-6 domain protein [Rhodopseudomonas palustris
           DX-1]
          Length = 376

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 220/356 (61%), Positives = 277/356 (77%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           +E + +II G+ I+ +EKLPAKSVDL+FADPPYNLQL G L RPD S VDAV D WDKF+
Sbjct: 19  YEPESQIIVGDCIAEMEKLPAKSVDLVFADPPYNLQLKGALKRPDESEVDAVDDDWDKFA 78

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           SF AYD FTRAWLLA RR++KP+ TLWVIGSYHNIFR+G ++Q+L FW+LNDIVWRKSNP
Sbjct: 79  SFAAYDNFTRAWLLAARRIMKPSATLWVIGSYHNIFRVGAIMQDLGFWLLNDIVWRKSNP 138

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           MPNFRGRRF NAHET+IWA+    AKGYTFNYDALKAANEDVQ RSDWLIP+C+G ERL+
Sbjct: 139 MPNFRGRRFTNAHETMIWAARDENAKGYTFNYDALKAANEDVQARSDWLIPLCTGEERLK 198

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
            KDG+K+HPTQKPE LL+R+L+SS++PGD+++DPF G+GT+GAVAK+LRR++IG E  + 
Sbjct: 199 GKDGKKVHPTQKPEQLLARVLLSSSRPGDLVVDPFNGTGTTGAVAKRLRRNYIGFERDRT 258

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATV 316
           Y + A  RI +++PL +  L      R  PRVAF+ L+ERG+I PG  L +++    A V
Sbjct: 259 YAEAARARIDAIEPLPDDTLKPFLTARDAPRVAFSELIERGMISPGARLVDSKKRHGALV 318

Query: 317 CADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
            ADG ++ G ++GSIHR+GA   GSE CNGW FW+ E    L  I+ LR  +R  +
Sbjct: 319 RADGAIMLGDKVGSIHRIGAMAQGSEACNGWTFWHVETSKGLRLIDELRTEIRNTM 374


>gi|158422077|ref|YP_001523369.1| putative adenine DNA methyltransferase [Azorhizobium caulinodans
           ORS 571]
 gi|158328966|dbj|BAF86451.1| putative adenine DNA methyltransferase [Azorhizobium caulinodans
           ORS 571]
          Length = 395

 Score =  482 bits (1240), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 218/356 (61%), Positives = 274/356 (76%), Gaps = 4/356 (1%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+I+ G+ +  L  LP  SVD++FADPPYNLQL G+L RPD S VDAV D+WD+F SFEA
Sbjct: 34  DRILIGDCVEQLASLPPHSVDMVFADPPYNLQLQGELKRPDDSRVDAVDDAWDQFESFEA 93

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YDAFTRAWLLA +RV+KPN T+WVIGSYHNIFR+G ++Q+L FWILND+VWRKSNPMPNF
Sbjct: 94  YDAFTRAWLLAVKRVMKPNATIWVIGSYHNIFRVGALMQDLGFWILNDVVWRKSNPMPNF 153

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RGRRF NAHET+IWA+  P AKGY FNY+ALK  NEDVQ+RSDWL+PIC+G ERL++  G
Sbjct: 154 RGRRFTNAHETMIWAARDPGAKGYQFNYEALKGGNEDVQVRSDWLLPICTGGERLKDAQG 213

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            KLHPTQKPEALL+R+++S++KPGD++LDPF GSGTS AVAK+LRR F+G+E  + Y   
Sbjct: 214 RKLHPTQKPEALLARVMLSASKPGDVVLDPFLGSGTSAAVAKRLRRHFVGVERDETYAAA 273

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  RI +++PL    L      R  PRVAF+ LV+ GL+ PG  LT+A+G++ A V ADG
Sbjct: 274 AAARIDAIEPLPEAALVAPPSAREAPRVAFSALVDSGLVTPGLELTDAKGHVRAVVRADG 333

Query: 321 T--LISGTEL--GSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           T  L++   L  GSIHR+GA   G+E CNGW FW+ E+ G  H I+ LR  +R E+
Sbjct: 334 TIALVNAATLAVGSIHRMGALAQGAEACNGWTFWHVEQEGRRHPIDVLRARLRAEM 389


>gi|209886095|ref|YP_002289952.1| modification methylase CcrMI [Oligotropha carboxidovorans OM5]
 gi|209874291|gb|ACI94087.1| modification methylase CcrMI [Oligotropha carboxidovorans OM5]
          Length = 374

 Score =  481 bits (1237), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 224/371 (60%), Positives = 279/371 (75%), Gaps = 1/371 (0%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           MS++ + A     N       +I+ G+ ++ + KLPA SVDL+FADPPYNLQL G+L RP
Sbjct: 1   MSRRGASAKAPRTNFETSPSARIVIGDCVAEMTKLPANSVDLVFADPPYNLQLKGELKRP 60

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           D S VDAV D WDKFSSF AYD FTRAWLLACRR++KP  T+WVIGSYHNIFR+G ++Q+
Sbjct: 61  DESHVDAVNDDWDKFSSFAAYDDFTRAWLLACRRIMKPTATIWVIGSYHNIFRVGAIMQD 120

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           L FWILNDIVWRKSNPMPNFRGRRF NAHET+IWA+   +A  YTFNYDALKAANEDVQ 
Sbjct: 121 LGFWILNDIVWRKSNPMPNFRGRRFTNAHETMIWAA-RDEATKYTFNYDALKAANEDVQA 179

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           RSDWLIP+C+G ERL+ KDG K+HPTQKPE LL+R+L+SS+KPGD+++DPF G+GT+GAV
Sbjct: 180 RSDWLIPLCTGEERLKGKDGRKIHPTQKPEGLLARVLLSSSKPGDLVIDPFNGTGTTGAV 239

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           AK+L RS+IG E  + Y + A KRIA+V+PL    L      R  PRV F  L+ERG+I 
Sbjct: 240 AKRLGRSYIGFERDRTYAEAAEKRIAAVEPLPQATLAPFMTAREAPRVPFAELIERGMIS 299

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
           PG  L +++   +A V ADG ++ G ++GSIHR+GA   GSE CNGW+FW+ E    L  
Sbjct: 300 PGAKLVDSKKKHAALVRADGAIMLGDKVGSIHRMGALAQGSEACNGWSFWHVETKKGLRL 359

Query: 361 INTLRILVRKE 371
           I+ LR  VR+E
Sbjct: 360 IDELRAEVRRE 370


>gi|118590772|ref|ZP_01548173.1| adenine dna methyltransferase protein [Stappia aggregata IAM 12614]
 gi|118436748|gb|EAV43388.1| adenine dna methyltransferase protein [Stappia aggregata IAM 12614]
          Length = 379

 Score =  476 bits (1224), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 219/354 (61%), Positives = 274/354 (77%), Gaps = 1/354 (0%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W + I+KG+ ++ LEKLP++SVDL+FADPPYNLQL G L+RPD S VDA  D WD+F SF
Sbjct: 25  WLNTILKGDCVAALEKLPSRSVDLVFADPPYNLQLGGDLHRPDQSKVDACDDHWDQFESF 84

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           EAYDAFTRAWLLA RRV+K +G+L+VIGSYHNIFR+G +LQ+L FWI+NDIVW KSNPMP
Sbjct: 85  EAYDAFTRAWLLAVRRVMKADGSLYVIGSYHNIFRVGAILQDLGFWIMNDIVWLKSNPMP 144

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRG+RF NAHET+IWA  S  AK  TFNYDALK  NED+QMRSDW +P+C+G+ERL+ K
Sbjct: 145 NFRGKRFTNAHETMIWAVKSKDAKP-TFNYDALKTFNEDLQMRSDWHLPLCTGAERLKGK 203

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           DG+K+HPTQKPEALL R+L +S+KPGD++LDPFFG+GT+GAVAKKL R ++G+E +QDYI
Sbjct: 204 DGQKVHPTQKPEALLYRVLTASSKPGDVVLDPFFGTGTTGAVAKKLGRHYVGVEREQDYI 263

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RI +++P     L +  GKR   R+ F  L+E GL+QPG  L+  +G   A V A
Sbjct: 264 DAATARIEAIEPGDAASLEMQQGKRALKRIPFGTLLESGLLQPGTELSCPKGKHLAIVRA 323

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DG+L SG   GSIH+VGA V G E CNGW FW+  + G+   I+ LR  +R  L
Sbjct: 324 DGSLKSGDHTGSIHKVGALVQGQEACNGWTFWHINEGGKTSPIDDLRKEIRSRL 377


>gi|115526424|ref|YP_783335.1| DNA methylase N-4/N-6 domain-containing protein [Rhodopseudomonas
           palustris BisA53]
 gi|115520371|gb|ABJ08355.1| DNA adenine methylase CcrM [Rhodopseudomonas palustris BisA53]
          Length = 379

 Score =  474 bits (1221), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 214/351 (60%), Positives = 268/351 (76%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I+ G+ ++ + KLP  SVDL+FADPPYNLQL G L RPD S VDAV D WDKFSSF AY
Sbjct: 26  RIVIGDCVAEMSKLPKASVDLVFADPPYNLQLKGDLKRPDESHVDAVNDDWDKFSSFAAY 85

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTRAWLL+CRR++KP+ T+WVIGSYHNIFR+G ++Q+L FW+LNDIVWRKSNPMPNFR
Sbjct: 86  DDFTRAWLLSCRRIMKPSATIWVIGSYHNIFRVGAIMQDLGFWVLNDIVWRKSNPMPNFR 145

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           GRRF NAHET+IWA+    AKGYTFNY+ALKAANEDVQ RSDWLIP+C+G ERL+  DG+
Sbjct: 146 GRRFTNAHETMIWAARDENAKGYTFNYEALKAANEDVQARSDWLIPLCTGDERLKGADGK 205

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+HPTQKPE LL+R+L+SS+KPGD+++DPF G+GT+GAVAK+L R +IG E  +DY   A
Sbjct: 206 KVHPTQKPEGLLARVLLSSSKPGDLVIDPFNGTGTTGAVAKRLGRRYIGFERDKDYAKAA 265

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
             RI +++PL    L      R+ PRVAF  LVERG+I PG  L +++    A V ADG 
Sbjct: 266 RARIDAIEPLPEATLAPFVTARSAPRVAFAELVERGMILPGTKLVDSKKRHGALVRADGA 325

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           ++ G ++GSIHR+GA   GSE CNGW FW+ E    L  I+ LR  +R  +
Sbjct: 326 IMLGDKVGSIHRIGAVAQGSEACNGWTFWHVETKKGLKLIDELRAEIRSGM 376


>gi|310817213|ref|YP_003965177.1| modification methylase [Ketogulonicigenium vulgare Y25]
 gi|308755948|gb|ADO43877.1| modification methylase [Ketogulonicigenium vulgare Y25]
          Length = 367

 Score =  474 bits (1220), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 216/352 (61%), Positives = 272/352 (77%), Gaps = 1/352 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D II G+ I  +  LP  S+DLIFADPPYNLQL G+L+RPD+S VDAV D WD+F SF A
Sbjct: 15  DSIIAGDCIDAMRALPDASIDLIFADPPYNLQLKGELHRPDNSRVDAVDDHWDQFDSFAA 74

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YDAF+RAWL   RR+LKPNG +WVIGSYHNIFR+G  LQN  +W+LND++WRKSNPMPNF
Sbjct: 75  YDAFSRAWLAEARRLLKPNGAIWVIGSYHNIFRLGAELQNQGYWLLNDVIWRKSNPMPNF 134

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+R  NAHETLIWA+ S  AK  TFNY+ALKA NE VQMRSDW++PIC+G ERL+  DG
Sbjct: 135 RGKRLTNAHETLIWAAKSENAKP-TFNYEALKALNEGVQMRSDWVLPICTGHERLKGDDG 193

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K HPTQKPE+LL R+L+ +T PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  +
Sbjct: 194 AKAHPTQKPESLLHRVLIGTTNPGDVVLDPFFGTGTTGAVAKMLGRHFIGIEREESYRKV 253

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           AT+R+A V+PL    L V T KR EPRVAF LLVERG+++PG+ L +  G  SA V ADG
Sbjct: 254 ATRRLAKVRPLSAEALAVTTSKRAEPRVAFGLLVERGMLRPGEELQSLNGRHSAKVRADG 313

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           TL++    GSIH+VGA++ G+ +CNGW +W+F++ G+   I+ LR  +R E+
Sbjct: 314 TLVATDHTGSIHQVGARLEGAPSCNGWTYWHFKRDGQNVPIDALRQQIRDEM 365


>gi|86748198|ref|YP_484694.1| DNA methylase N-4/N-6 [Rhodopseudomonas palustris HaA2]
 gi|86571226|gb|ABD05783.1| DNA adenine methylase CcrM [Rhodopseudomonas palustris HaA2]
          Length = 377

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 219/353 (62%), Positives = 274/353 (77%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +++II G+ ++ + KLPAKSVDL+FADPPYNLQL G L RPD S VDAV D WDKFSSF 
Sbjct: 22  ENRIIVGDCVAEMSKLPAKSVDLVFADPPYNLQLKGALKRPDESQVDAVDDDWDKFSSFA 81

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FTRAWLLA RR++KP+ T+WVIGSYHNIFR+G ++Q+L FW+LNDIVWRK+NPMPN
Sbjct: 82  AYDDFTRAWLLAARRIMKPSATIWVIGSYHNIFRVGAIMQDLGFWVLNDIVWRKTNPMPN 141

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRGRRF NAHET+IWA+    AKGYTFNYDALKA+NEDVQ RSDWLIP+C+G ERL+ KD
Sbjct: 142 FRGRRFTNAHETMIWAARDENAKGYTFNYDALKASNEDVQARSDWLIPLCTGDERLKGKD 201

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K+HPTQKPE LL+R+L+SS+KPGD+++DPF G+GT+GAVAK+LRR++IG E  + Y D
Sbjct: 202 GKKVHPTQKPEGLLARVLLSSSKPGDLVIDPFNGTGTTGAVAKRLRRNYIGFERDRTYAD 261

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A  RI +V+PL    L      R  PRVAF+ L+ERG+I PG  L +++    A V AD
Sbjct: 262 AARARIDAVEPLPEDTLKPFLTARDAPRVAFSELIERGMISPGAKLVDSKKRHGALVRAD 321

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           G ++ G ++GSIHR+GA   GSE CNGW FW+ E    L  I+ LR  VR  +
Sbjct: 322 GAIMLGDKVGSIHRIGAMAQGSEACNGWTFWHVETTKGLRLIDELRAEVRSAM 374


>gi|85714254|ref|ZP_01045242.1| DNA methylase N-4/N-6 [Nitrobacter sp. Nb-311A]
 gi|85698701|gb|EAQ36570.1| DNA methylase N-4/N-6 [Nitrobacter sp. Nb-311A]
          Length = 376

 Score =  472 bits (1214), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 220/351 (62%), Positives = 271/351 (77%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +II G+ ++ + KLPA S DLIFADPPYNLQL G+L RPD S VDAV   WDKFSSF AY
Sbjct: 23  RIIIGDCVAGMSKLPAGSADLIFADPPYNLQLKGELKRPDESHVDAVNSEWDKFSSFSAY 82

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTRAWLLACRRV+KP+ T+WVIGSYHNIFR+G M+Q+L FW+LNDIVWRK+NPMPNFR
Sbjct: 83  DDFTRAWLLACRRVMKPSATIWVIGSYHNIFRVGAMMQDLGFWVLNDIVWRKTNPMPNFR 142

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           GRRF NAHET+IWA+    AKGYTFNY+ALKAANEDVQ RSDWLIP+C+G+ERL+ KDG 
Sbjct: 143 GRRFTNAHETMIWAARDENAKGYTFNYEALKAANEDVQARSDWLIPLCTGNERLKGKDGR 202

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+HPTQKPE LL+R+L+SS+KPGD+++DPF G+GT+GAVAK+L RS+IG E  Q Y   A
Sbjct: 203 KIHPTQKPEGLLARVLLSSSKPGDLVIDPFNGTGTTGAVAKRLGRSYIGFERDQAYAAAA 262

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
            KRIA+V+PL    L      R  PRVAF+ L+ERG+I PG  L +A+    A V ADG 
Sbjct: 263 EKRIAAVEPLPEATLAPFMTAREAPRVAFSELIERGMISPGAKLVDAKKRHGALVRADGA 322

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           ++ G ++GSIHR+GA   G+  CNGW FW+ E    L  I+ LR  +R ++
Sbjct: 323 IMLGDKVGSIHRIGAVAQGASACNGWTFWHIETSKGLRLIDELRAEIRSQM 373


>gi|90425838|ref|YP_534208.1| DNA methylase N-4/N-6 [Rhodopseudomonas palustris BisB18]
 gi|90107852|gb|ABD89889.1| DNA methylase N-4/N-6 [Rhodopseudomonas palustris BisB18]
          Length = 377

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 215/351 (61%), Positives = 270/351 (76%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I+ G+ ++ + K+ A SVDL+FADPPYNLQL G L RPD S VDAVTD WDKF SF AY
Sbjct: 24  QIVIGDCVAEMSKMAAGSVDLVFADPPYNLQLKGDLKRPDESHVDAVTDDWDKFDSFAAY 83

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTRAWLLACRR++KP  TLWVIGSYHNIFR+GT++Q+L FW+LNDIVWRK+NPMPNFR
Sbjct: 84  DNFTRAWLLACRRIMKPTATLWVIGSYHNIFRVGTIMQDLGFWVLNDIVWRKTNPMPNFR 143

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           GRRF NAHET+IWA+    +KGYTFNY+ALKAANEDVQ RSDWLIP+C+G ERL+  DG+
Sbjct: 144 GRRFTNAHETMIWAARDENSKGYTFNYEALKAANEDVQARSDWLIPLCTGEERLKGADGK 203

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+HPTQKPE LL+R+L+SS+KPGD++LDPF G+GT+GAVAK+L R +IG E   DY   A
Sbjct: 204 KIHPTQKPEGLLARVLLSSSKPGDLVLDPFNGTGTTGAVAKRLGRHYIGFERDHDYAAAA 263

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
             RI +++PL +  L      R+ PRVAF+ L+ERG+I PG  L +++    A V ADG 
Sbjct: 264 RARIDAIEPLPDATLAPFMTARSAPRVAFSELIERGIISPGTKLVDSKKRHGALVRADGA 323

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           ++ G ++GSIHR+GA   GSE CNGW FW+ E    L  I+ LR  +R E+
Sbjct: 324 IMLGDKVGSIHRMGAVAQGSEACNGWTFWHVETHKGLRLIDELRAEIRSEM 374


>gi|91975680|ref|YP_568339.1| DNA methylase N-4/N-6 [Rhodopseudomonas palustris BisB5]
 gi|91682136|gb|ABE38438.1| DNA adenine methylase CcrM [Rhodopseudomonas palustris BisB5]
          Length = 377

 Score =  469 bits (1207), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 218/358 (60%), Positives = 278/358 (77%), Gaps = 2/358 (0%)

Query: 17  FEW--KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           FE+  +++II G+ ++ + KLPA+SVDL+FADPPYNLQL G+L RPD S VDAV + WDK
Sbjct: 17  FEYLPENRIIVGDCVAEMSKLPARSVDLVFADPPYNLQLKGELKRPDESHVDAVDNDWDK 76

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
           FSSF AYD FTRAWLLA RR++KP+ T+WVIGSYHNIFR+G ++Q+L FW+LNDIVWRK+
Sbjct: 77  FSSFAAYDDFTRAWLLAARRIMKPSATIWVIGSYHNIFRVGAIMQDLGFWLLNDIVWRKT 136

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           NPMPNFRGRRF NAHET+IWA+    AKGYTFNYDALKAANEDVQ RSDWLIP+C+G ER
Sbjct: 137 NPMPNFRGRRFTNAHETMIWAARDENAKGYTFNYDALKAANEDVQARSDWLIPLCTGEER 196

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L+  DG+K+HPTQKPE LL+R+L+SS+KPGD+++DPF G+GT+GAVAK+LRR++IG E  
Sbjct: 197 LKGSDGKKVHPTQKPEGLLARVLLSSSKPGDLVIDPFNGTGTTGAVAKRLRRNYIGFERD 256

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISA 314
           +DY   A  RIA+++PL    L      R+ PRVAF  L+ERG+I PG  L +++    A
Sbjct: 257 RDYATAAEARIAAIEPLPEATLAPFMTARSAPRVAFAELIERGIISPGTKLVDSKKRHGA 316

Query: 315 TVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
            V ADG ++ G ++GSIHR+GA   GSE CNGW FW+ E    L  I+ LR  +R  +
Sbjct: 317 LVRADGAIMLGDKVGSIHRIGAVAQGSEACNGWTFWHVETSKGLRLIDELRAEIRSAM 374


>gi|254471927|ref|ZP_05085328.1| modification methylase SmeIP [Pseudovibrio sp. JE062]
 gi|211959129|gb|EEA94328.1| modification methylase SmeIP [Pseudovibrio sp. JE062]
          Length = 365

 Score =  469 bits (1206), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 215/355 (60%), Positives = 273/355 (76%), Gaps = 1/355 (0%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           EW D IIKG+ +  L KLP  SVD++FADPPYNLQL G L+RPDHS VDA  D WD+FSS
Sbjct: 10  EWLDTIIKGDCVEALNKLPDNSVDVVFADPPYNLQLGGDLHRPDHSKVDACDDHWDQFSS 69

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           F+AYD FTRAWL A RRVLKPNG++WVIGSYHNIFR+G ++Q+L FWI ND+VW K+NPM
Sbjct: 70  FKAYDEFTRAWLTAVRRVLKPNGSIWVIGSYHNIFRVGAVMQDLGFWINNDVVWLKTNPM 129

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PNFRG+RF NAHETLIWA PS ++K  TFNYDA+K  N+D+QMRSDW++PIC+G ERL++
Sbjct: 130 PNFRGKRFTNAHETLIWACPSQESKP-TFNYDAMKTFNDDLQMRSDWVLPICTGHERLKD 188

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
            +G+K+HPTQKPE+LL R+L+S++  GD+ILDPFFG+GT+GAVAKKL R F+G E +  Y
Sbjct: 189 DNGDKVHPTQKPESLLYRVLLSTSNQGDVILDPFFGTGTTGAVAKKLGRHFVGCEREDAY 248

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
           I  A++RI  V P  +  L +  GKR  PRV F  L+E GL+ PG  LT+A+G   ATV 
Sbjct: 249 IKAASERIDRVTPANDDFLAMTQGKRALPRVPFGNLLETGLLTPGAELTDARGRFKATVR 308

Query: 318 ADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           ADG+LI G   GSIH+VGA V G + CNGW FW+ ++   L  ++ LR +VR ++
Sbjct: 309 ADGSLICGEHSGSIHKVGALVQGQQACNGWTFWHVKRGKALEPVDALRQVVRSQM 363


>gi|254504291|ref|ZP_05116442.1| DNA methylase domain protein [Labrenzia alexandrii DFL-11]
 gi|222440362|gb|EEE47041.1| DNA methylase domain protein [Labrenzia alexandrii DFL-11]
          Length = 346

 Score =  469 bits (1206), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 214/344 (62%), Positives = 272/344 (79%), Gaps = 1/344 (0%)

Query: 29  ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
           ++ LEKLP++SVDL+FADPPYNLQL G L+RPD S VDA  D WD+F SFEAYDAFTRAW
Sbjct: 1   MAALEKLPSRSVDLVFADPPYNLQLGGDLHRPDQSKVDACDDHWDQFESFEAYDAFTRAW 60

Query: 89  LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
           LLA RRV+K +G+L+VIGSYHNIFR+G +LQ+L FWI+NDIVW KSNPMPNFRG+RF NA
Sbjct: 61  LLAARRVMKTDGSLYVIGSYHNIFRVGAILQDLGFWIMNDIVWLKSNPMPNFRGKRFTNA 120

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
           HET+IWA+ S  AK  TFNYDALK  NED+QMRSDW +P+C+G+ERL+ KDG+K+HPTQK
Sbjct: 121 HETMIWATKSKDAKP-TFNYDALKTFNEDLQMRSDWHLPLCTGAERLKGKDGQKVHPTQK 179

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           PEALL R+L +S+KPGD++LDPFFG+GT+GAVA+KL R+++G+E +QDYID AT RIA++
Sbjct: 180 PEALLYRVLTASSKPGDVVLDPFFGTGTTGAVARKLGRNYVGVEREQDYIDAATARIAAI 239

Query: 269 QPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTEL 328
           QP     L +  GKR + R+ F  L+E G+++PG  LT ++G   A V ADG+L SG   
Sbjct: 240 QPGDEKALEMQQGKRAQKRIPFGTLLENGVLEPGTELTCSKGKHLAIVRADGSLKSGDHT 299

Query: 329 GSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           GSIH+VGA V G E CNGW FW+ ++  +   I+ LR  +R  L
Sbjct: 300 GSIHKVGALVQGQEACNGWTFWHTKEGSKKSPIDELRKEIRSRL 343


>gi|92118691|ref|YP_578420.1| DNA methylase N-4/N-6 [Nitrobacter hamburgensis X14]
 gi|91801585|gb|ABE63960.1| DNA methylase N-4/N-6 [Nitrobacter hamburgensis X14]
          Length = 376

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 215/351 (61%), Positives = 271/351 (77%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +II G+ ++ + KLP+ S DL+FADPPYNLQL G L RPD S VDAV D WDKFSSF AY
Sbjct: 23  RIIVGDCVAAMSKLPSGSADLVFADPPYNLQLKGDLKRPDESHVDAVNDDWDKFSSFAAY 82

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTRAWLLACRRV+KP  T+WVIGSYHNIFR+G ++Q+L FW+LNDIVWRK+NPMPNFR
Sbjct: 83  DDFTRAWLLACRRVMKPTATIWVIGSYHNIFRVGAIMQDLGFWVLNDIVWRKTNPMPNFR 142

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           GRRF NAHET+IWA+    AKGYTFNY+ALKA+NEDVQ RSDWLIP+C+G+ERL++KDG 
Sbjct: 143 GRRFTNAHETMIWAARDENAKGYTFNYEALKASNEDVQARSDWLIPLCTGNERLKDKDGR 202

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+HPTQKPE LL+R+L+SS++PGD+I+DPF G+GT+GAVAK+L R++IG E  Q Y   A
Sbjct: 203 KVHPTQKPEGLLARVLLSSSRPGDLIIDPFNGTGTTGAVAKRLGRNYIGFERDQTYAAAA 262

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
            KRIA+++PL    +      R  PRVAF+ L+ERG+I PG  L +A+    A V ADG 
Sbjct: 263 EKRIAAIEPLPEATIAPFMTAREAPRVAFSELIERGMISPGAKLVDAKKRHGALVRADGA 322

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           ++ G ++GSIHR+GA   G+  CNGW FW+ E    L  I+ LR  +R E+
Sbjct: 323 IMLGDKVGSIHRIGAVAQGAGACNGWTFWHIETSKGLRLIDELRAEIRSEM 373


>gi|197104043|ref|YP_002129420.1| modification methylase [Phenylobacterium zucineum HLK1]
 gi|196477463|gb|ACG76991.1| modification methylase [Phenylobacterium zucineum HLK1]
          Length = 359

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 214/352 (60%), Positives = 268/352 (76%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D II+G+ +  L+KLP +SVDL+FADPPYNLQL G L RPD+S VDAV D WD+F SFEA
Sbjct: 6   DTIIEGDCLEALKKLPDRSVDLVFADPPYNLQLGGDLLRPDNSKVDAVDDHWDQFESFEA 65

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YDAFTRAWL  CRRVLK +G +WVIGSYHNIFR+G  +Q+L FWILNDIVWRKSNPMPNF
Sbjct: 66  YDAFTRAWLKECRRVLKDDGAIWVIGSYHNIFRVGVAVQDLGFWILNDIVWRKSNPMPNF 125

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWAS S   + YTFNYDA+K AN+++QMRSDW +P+C+G ERL++  G
Sbjct: 126 KGTRFTNAHETLIWASKSRGGRRYTFNYDAMKMANDELQMRSDWTLPLCTGDERLKDGSG 185

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K HPTQKPEALL R++++STKPGD+ILDPFFG+GT+GAVA++L R F+GIE + +Y  +
Sbjct: 186 AKAHPTQKPEALLHRVILASTKPGDVILDPFFGTGTTGAVARRLGRKFVGIEREAEYAAL 245

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KRIA V P    E+ V   KR EPRV F  ++E GL++PG +L   +G  +A V ADG
Sbjct: 246 ARKRIAQVTPATADEMAVTGSKRAEPRVPFGTILEAGLLRPGDVLYCPKGRNAARVRADG 305

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           +L+ G   GSIH+VGA V  +  CNGW +W+F+    L  I+ LR  VR +L
Sbjct: 306 SLVVGEVSGSIHKVGALVQSAPACNGWTYWHFKSDKGLAPIDVLRAKVRSQL 357


>gi|84687972|ref|ZP_01015836.1| modification methylase [Maritimibacter alkaliphilus HTCC2654]
 gi|84664004|gb|EAQ10504.1| modification methylase [Rhodobacterales bacterium HTCC2654]
          Length = 364

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 218/352 (61%), Positives = 270/352 (76%), Gaps = 2/352 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I+ G+ I V+  LP  SVDLIFADPPYNLQL G L+RPD+S VDAV D WD+F+SF+ 
Sbjct: 14  NQILPGDCIEVMNSLPEGSVDLIFADPPYNLQLKGDLHRPDNSKVDAVDDEWDQFASFKV 73

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL A RR+LKPNG +WVIGSYHN+FR+G  LQN  FWILND+VWRKSNPMPNF
Sbjct: 74  YDDFTREWLAAARRLLKPNGAIWVIGSYHNVFRMGAELQNQGFWILNDVVWRKSNPMPNF 133

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+R  NAHETLIWA  S  +K  TFNY+ALK+ NE VQMRSDW+IPIC+G ERL++ +G
Sbjct: 134 RGKRLTNAHETLIWAQKSEDSKA-TFNYEALKSLNEGVQMRSDWVIPICNGGERLKDDNG 192

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           EK HPTQKPEALL R+LV +T PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  +
Sbjct: 193 EKAHPTQKPEALLHRVLVGTTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREEAYRKV 252

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KRI+ ++      LTV T KR EPRVAF  LVERG+++PG+ L   +G I A V ADG
Sbjct: 253 AEKRISKIRKFDKEALTVSTSKRAEPRVAFGQLVERGMLRPGETLIGPRGQI-AKVRADG 311

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           TLISG   GSIH+VGA +  + +CNGW +W F++ G+  SI+ LR  +R E+
Sbjct: 312 TLISGEARGSIHQVGAALESAPSCNGWTYWAFKRDGKTVSIDVLRQQIRAEM 363


>gi|56698274|ref|YP_168647.1| modification methylase [Ruegeria pomeroyi DSS-3]
 gi|56680011|gb|AAV96677.1| modification methylase [Ruegeria pomeroyi DSS-3]
          Length = 367

 Score =  465 bits (1196), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 217/352 (61%), Positives = 268/352 (76%), Gaps = 1/352 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I+ G+ I V+  +P  SVDLIFADPPYNLQL GQL+RPD+S VDAV D WD+FSSF AYD
Sbjct: 17  IVSGDCIDVMNAMPEASVDLIFADPPYNLQLKGQLHRPDNSQVDAVDDHWDQFSSFAAYD 76

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FTRAWL A RR+LKPNG +WVIGSYHNIFR+G+ LQ+  +WILND+VWRKSNPMPNFRG
Sbjct: 77  QFTRAWLKAARRLLKPNGAIWVIGSYHNIFRVGSALQDAGYWILNDVVWRKSNPMPNFRG 136

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +RF NAHET+IWAS S   K YTFNY+ALKA NE VQMRSDW++PIC+G ER+++++G+K
Sbjct: 137 KRFTNAHETMIWASKSEGGK-YTFNYEALKALNEGVQMRSDWVMPICTGHERIKDENGDK 195

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPEALL R+LVSST PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  +A 
Sbjct: 196 AHPTQKPEALLHRVLVSSTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREEAYRKVAE 255

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KRIA V+      L V   KR EPR+ F  LVERG+++PG+ L +      A V ADGTL
Sbjct: 256 KRIAKVRKFDREALEVSASKRAEPRIPFGQLVERGMLRPGEELYSMNQRHKAKVRADGTL 315

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           I     GSIH+VGA +  + +CNGW +W F++ G+   I+ LR  +R EL N
Sbjct: 316 IGQNIKGSIHQVGAHLENAPSCNGWTYWCFKRDGKTVPIDVLRQQIRAELEN 367


>gi|126734212|ref|ZP_01749959.1| modification methylase [Roseobacter sp. CCS2]
 gi|126717078|gb|EBA13942.1| modification methylase [Roseobacter sp. CCS2]
          Length = 369

 Score =  464 bits (1195), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 215/350 (61%), Positives = 268/350 (76%), Gaps = 1/350 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I+ G+ I V+  LPA SVDLIFADPPYNLQL G L+RPD+S VDAV D+WD+F SF+ YD
Sbjct: 18  IVDGDCIDVMNSLPAGSVDLIFADPPYNLQLKGDLHRPDNSKVDAVDDAWDQFDSFKVYD 77

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FTR WL A RR+LKPNG +WVIGSYHN+FR+G  LQN  FWILND+VWRKSNPMPNFRG
Sbjct: 78  KFTREWLAAARRLLKPNGAIWVIGSYHNVFRMGAELQNQGFWILNDVVWRKSNPMPNFRG 137

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +R  NAHETLIWAS    +K YTFNY+ALKA NE VQMRSDW++PIC+G ERL+N+ G+K
Sbjct: 138 KRLTNAHETLIWASKEEASK-YTFNYEALKALNEGVQMRSDWVLPICTGHERLKNEAGDK 196

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKP++LL R+LV++T PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  +A 
Sbjct: 197 AHPTQKPQSLLHRVLVATTNPGDVVLDPFFGTGTTGAVAKMLGRDFIGIEREESYRKVAE 256

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KRI + +   N  L V T KR EPRVAF +LVERG+++PG+ L +  G   A V ADGTL
Sbjct: 257 KRIKNTRKFDNEALQVSTSKRAEPRVAFGVLVERGMLRPGEELWSMNGRHKAKVRADGTL 316

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           I     GSIH+VGA + G+ +CNGW +W F++ G+   I+ LR  +R E+
Sbjct: 317 IGDDIKGSIHQVGAHLEGAPSCNGWTYWQFKRDGQKVPIDLLRQQIRSEM 366


>gi|299134661|ref|ZP_07027853.1| DNA methylase N-4/N-6 domain protein [Afipia sp. 1NLS2]
 gi|298590471|gb|EFI50674.1| DNA methylase N-4/N-6 domain protein [Afipia sp. 1NLS2]
          Length = 376

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 217/351 (61%), Positives = 273/351 (77%), Gaps = 1/351 (0%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I+ G+ ++ + KLPA SVDL+FADPPYNLQL G+L RPD S VDAV + WDKFSSF AY
Sbjct: 24  RIVIGDCVAEMTKLPASSVDLVFADPPYNLQLKGELKRPDESHVDAVNNDWDKFSSFAAY 83

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTRAWLLA RR +KP+ T+WVIGSYHNIFR+G ++Q+L FWILNDIVWRK+NPMPNFR
Sbjct: 84  DDFTRAWLLAARRAMKPSATIWVIGSYHNIFRVGAIMQDLGFWILNDIVWRKTNPMPNFR 143

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           GRRF NAHET+IWA+     K YTFNYDALKAANEDVQ RSDWLIP+C+G ERL+ KDG+
Sbjct: 144 GRRFTNAHETMIWAARDESTK-YTFNYDALKAANEDVQARSDWLIPLCTGDERLKGKDGK 202

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+HPTQKPE LL+R+L+SS+KPGD+++DPF G+GT+GAVAK+L RS+IG E  + Y   A
Sbjct: 203 KVHPTQKPEGLLARVLLSSSKPGDLVIDPFNGTGTTGAVAKRLGRSYIGFERDKTYAAAA 262

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
            KRIA+V+PL    L      R  PRVAF+ L+ERG+I PG  L +++   +A V ADG 
Sbjct: 263 EKRIAAVEPLPEATLAPFLTARDAPRVAFSELIERGMISPGAKLVDSKKKHAALVRADGA 322

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           ++ G ++GSIHR+GA   GSE CNGW+FW+ E    L  I+ LR  +R+E+
Sbjct: 323 IMLGDKVGSIHRMGAVAQGSEACNGWSFWHVETKKGLRLIDELRAEIRREM 373


>gi|260432296|ref|ZP_05786267.1| modification methylase CcrMI [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260416124|gb|EEX09383.1| modification methylase CcrMI [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 367

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 214/352 (60%), Positives = 267/352 (75%), Gaps = 1/352 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I+ G+ I V+  LP  SVDLIFADPPYNLQL GQL+RPD+S VDAV D WD+FSSF AYD
Sbjct: 17  ILSGDCIEVMNSLPEASVDLIFADPPYNLQLKGQLHRPDNSQVDAVDDHWDQFSSFAAYD 76

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FTRAWL A  R+LKPNG +WVIGSYHNIFR+G+ LQ+  +WILND++WRKSNPMPNFRG
Sbjct: 77  KFTRAWLKAAHRLLKPNGAIWVIGSYHNIFRVGSALQDAGYWILNDVIWRKSNPMPNFRG 136

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +RF NAHET+IWAS    AK YTFNY+ALKA NE VQMRSDW++PIC+G ERL++++G+K
Sbjct: 137 KRFTNAHETMIWASKREGAK-YTFNYEALKALNEGVQMRSDWVLPICTGHERLKDENGDK 195

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE+LL R+L+ ST PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  +A 
Sbjct: 196 AHPTQKPESLLHRVLIGSTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREESYRKVAE 255

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KRIA V+      L V   KR EPRV F  LVERG+++PG+ L +      A V ADGTL
Sbjct: 256 KRIAKVRKFDRDALEVSASKRAEPRVPFGQLVERGMLRPGEELYSMNRRHKAKVRADGTL 315

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           +     GSIH+VGA +  + +CNGW +W F++ G+   I+ LR  +R EL+N
Sbjct: 316 VGDNIKGSIHQVGAHLENAPSCNGWTYWCFKREGKTVPIDVLRQQIRAELHN 367


>gi|27377620|ref|NP_769149.1| adenine DNA methyltransferase [Bradyrhizobium japonicum USDA 110]
 gi|27350765|dbj|BAC47774.1| adenine DNA methyltransferase [Bradyrhizobium japonicum USDA 110]
          Length = 376

 Score =  462 bits (1189), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 214/348 (61%), Positives = 267/348 (76%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +II G+ ++ + KL A SVDL+FADPPYNLQL G L RPD S VDAV D WDKF SF AY
Sbjct: 23  RIILGDCVAEMSKLQAGSVDLVFADPPYNLQLKGDLKRPDESHVDAVNDDWDKFDSFSAY 82

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTRAWLLA RR +KP+ T+WVIGSYHNIFR+G ++Q+L FW+LNDIVWRK+NPMPNFR
Sbjct: 83  DDFTRAWLLAARRAMKPSATIWVIGSYHNIFRVGAIMQDLGFWLLNDIVWRKTNPMPNFR 142

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           GRRF NAHET+IWA+   KAKGYTFNY+ALKAANEDVQ RSDWLIP+C+G ERL+  DG+
Sbjct: 143 GRRFTNAHETMIWAARDEKAKGYTFNYEALKAANEDVQARSDWLIPLCTGEERLKGADGK 202

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+HPTQKPE LL+R+L+SS+KPGD+++DPF G+GT+GAVAK+L RS+IG E  + Y   A
Sbjct: 203 KVHPTQKPEGLLARVLLSSSKPGDLVIDPFNGTGTTGAVAKRLGRSYIGFERDKTYAKAA 262

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
             RIA+V+PL    L      R  PRVAF+ L+ERG+I PG  L +A+  + A V ADG 
Sbjct: 263 EARIAAVEPLPEASLAPFMTAREAPRVAFSELIERGMIMPGTKLFDAKKKLGALVRADGA 322

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVR 369
           ++ G ++GSIHR+GA   G++ CNGW FW+ E    L  I+ LR  +R
Sbjct: 323 IMFGDKVGSIHRIGAVAQGAQACNGWTFWHVETKKGLKLIDELRAEIR 370


>gi|254512453|ref|ZP_05124520.1| modification methylase SmeIP [Rhodobacteraceae bacterium KLH11]
 gi|221536164|gb|EEE39152.1| modification methylase SmeIP [Rhodobacteraceae bacterium KLH11]
          Length = 367

 Score =  462 bits (1188), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 214/352 (60%), Positives = 266/352 (75%), Gaps = 1/352 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I+ G+ I  +  LP  SVDLIFADPPYNLQL GQL+RPD+S VDAV D WD+FSSF AYD
Sbjct: 17  ILSGDCIEAMNSLPEASVDLIFADPPYNLQLKGQLHRPDNSQVDAVDDHWDQFSSFGAYD 76

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FTRAWL A  R+LKPNG +WVIGSYHNIFR+G+ LQ+  +WILND+VWRKSNPMPNFRG
Sbjct: 77  QFTRAWLKAAHRLLKPNGAIWVIGSYHNIFRVGSALQDAGYWILNDVVWRKSNPMPNFRG 136

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +RF NAHET+IWAS    AK YTFNY+ALKA NE VQMRSDW++PIC+G ERL++++G+K
Sbjct: 137 KRFTNAHETMIWASKREGAK-YTFNYEALKALNEGVQMRSDWVLPICTGHERLKDENGDK 195

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE+LL R+L+ ST PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  +A 
Sbjct: 196 AHPTQKPESLLHRVLIGSTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREESYRKVAE 255

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KRIA V+      L V   KR EPRV F  LVERG+++PG+ L +      A V ADGTL
Sbjct: 256 KRIAKVRKFDREALEVSASKRAEPRVPFGQLVERGMLRPGEELYSMNKRHKAKVRADGTL 315

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           +     GSIH+VGA +  + +CNGW +W F++ G+   I+ LR  +R EL+N
Sbjct: 316 VGDNVKGSIHQVGAHLENAPSCNGWTYWCFKREGKTVPIDVLRQQIRAELHN 367


>gi|75676787|ref|YP_319208.1| DNA methylase N-4/N-6 [Nitrobacter winogradskyi Nb-255]
 gi|74421657|gb|ABA05856.1| DNA adenine methylase CcrM [Nitrobacter winogradskyi Nb-255]
          Length = 376

 Score =  461 bits (1187), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 215/351 (61%), Positives = 270/351 (76%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +II G+ ++ + KL A S DLIFADPPYNLQL G L RPD S VDAV   WDKFSSF AY
Sbjct: 23  RIIIGDCVAGMSKLQAGSADLIFADPPYNLQLKGDLKRPDESHVDAVNSDWDKFSSFSAY 82

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTRAWLLACRRV+KP+ T+WVIGSYHNIFR+G ++Q+L FW+LNDIVWRK+NPMPNFR
Sbjct: 83  DEFTRAWLLACRRVMKPSATIWVIGSYHNIFRVGAIMQDLGFWVLNDIVWRKTNPMPNFR 142

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           GRRF NAHET+IWA+    AKGYTFNY+ALKAANEDVQ RSDWLIP+C+G+ERL+++DG 
Sbjct: 143 GRRFTNAHETMIWAARDENAKGYTFNYEALKAANEDVQARSDWLIPLCTGNERLKDEDGR 202

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+HPTQKPE LL+R+L+SS+KPGD+++DPF G+GT+GAVAK+L R++IG E  + Y   A
Sbjct: 203 KVHPTQKPEGLLARVLLSSSKPGDLVIDPFNGTGTTGAVAKRLGRNYIGFERDRTYAAAA 262

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
            KRIA+V+PL    L      R  PRVAF+ L+ERG+I PG  L +A+    A V ADG 
Sbjct: 263 EKRIAAVEPLPEATLAPFMTAREAPRVAFSELIERGMISPGAKLVDAKKRHGALVRADGA 322

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           ++ G ++GSIHR+GA   G+  CNGW FW+ E    L  I+ LR  +R ++
Sbjct: 323 IMLGDKVGSIHRIGAVAQGAGACNGWTFWHIETSKGLKLIDELRAEIRSQM 373


>gi|260425326|ref|ZP_05779306.1| modification methylase CcrMI [Citreicella sp. SE45]
 gi|260423266|gb|EEX16516.1| modification methylase CcrMI [Citreicella sp. SE45]
          Length = 370

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 211/350 (60%), Positives = 269/350 (76%), Gaps = 2/350 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I+ G+ I ++  LP +SVDLIFADPPYNLQL G+L+RPD+S VDAV D WD+F+SF AYD
Sbjct: 18  ILDGDCIEMMNSLPEESVDLIFADPPYNLQLKGELHRPDNSRVDAVDDHWDQFASFAAYD 77

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FTR WL A RRVLKPNG +WVIGSYHNIFR+G  LQ+  +WILND+VWRKSNPMPNFRG
Sbjct: 78  QFTREWLAAARRVLKPNGAIWVIGSYHNIFRVGAALQDAGYWILNDVVWRKSNPMPNFRG 137

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +RF NAHET+IWAS S  AK YTFNY+ALKA NE +QMRSDW++PIC+G ERL++ +G+K
Sbjct: 138 KRFTNAHETMIWASKSDAAK-YTFNYEALKALNEGIQMRSDWVLPICNGGERLKDANGDK 196

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKP +LL R+LV ST PGD++LDPFFG+GT+GAVAK L R +IGIE +  Y ++AT
Sbjct: 197 AHPTQKPMSLLHRVLVGSTNPGDVVLDPFFGTGTTGAVAKMLGRDWIGIEREAAYREVAT 256

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           +RIA ++      L V   KR EPR+ F  LVERG+++PG++L +  G + A V ADGTL
Sbjct: 257 RRIADIRAFDRSALEVTRAKRAEPRIPFGQLVERGMLRPGEMLVSPSGKV-AKVRADGTL 315

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           +     GSIH+VGA + G+ +CNGW +W+F K G+   I+ LR  +R E+
Sbjct: 316 VGDDVKGSIHQVGAHLEGAPSCNGWTYWHFRKDGKHVPIDVLRQQIRAEM 365


>gi|154251158|ref|YP_001411982.1| DNA methylase N-4/N-6 domain-containing protein [Parvibaculum
           lavamentivorans DS-1]
 gi|154155108|gb|ABS62325.1| DNA methylase N-4/N-6 domain protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 367

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 209/350 (59%), Positives = 265/350 (75%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G+ I  +  LP KSVDLIFADPPYNLQL G L RPD S VDAV D WDKF+SF+ YD
Sbjct: 15  IIQGDCIEAMNALPEKSVDLIFADPPYNLQLGGGLTRPDQSKVDAVDDDWDKFASFQVYD 74

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FTR W+ A RRVLK  G +WVIGSYHNIFR+G  LQ+L FW++ND+VWRKSNPMPNFRG
Sbjct: 75  EFTRNWMNAARRVLKDTGAIWVIGSYHNIFRVGATLQDLGFWMMNDVVWRKSNPMPNFRG 134

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
            RF NAHETLIWA+ S   K YTFNYDA+KA N+D+QMRSDWL+PIC+G ERL++ DG+K
Sbjct: 135 TRFTNAHETLIWATKSADQKKYTFNYDAMKALNDDLQMRSDWLLPICTGGERLKDGDGDK 194

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPEALL R+L+++T  GD +LDPFFG+GT+GAVAKKL R+F+GIE ++ YI +A 
Sbjct: 195 AHPTQKPEALLHRVLLATTNAGDTVLDPFFGTGTTGAVAKKLGRNFVGIEREERYIKVAR 254

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           +RI  ++     +L V T K+ E R+ F  L+ERGL++PG +LT+     +A V ADG++
Sbjct: 255 ERIRLIKTGAPEDLKVTTSKKAEVRIPFGTLIERGLLEPGAVLTDPAKRHAARVRADGSI 314

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           +     GSIH++GA V G + CNGW FW+F+  G+L  I+ LR  VR E+
Sbjct: 315 VCRDATGSIHKIGAHVQGLDACNGWTFWHFKTDGKLKPIDILRQKVRAEM 364


>gi|83855283|ref|ZP_00948813.1| modification methylase [Sulfitobacter sp. NAS-14.1]
 gi|83941806|ref|ZP_00954268.1| modification methylase [Sulfitobacter sp. EE-36]
 gi|83843126|gb|EAP82293.1| modification methylase [Sulfitobacter sp. NAS-14.1]
 gi|83847626|gb|EAP85501.1| modification methylase [Sulfitobacter sp. EE-36]
          Length = 366

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 215/352 (61%), Positives = 264/352 (75%), Gaps = 1/352 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G+ I  +  LPA+SVDLIFADPPYNLQL G L+RPD+S VDAV D+WD+FSSF  YD
Sbjct: 16  IISGDCIEAMNALPAESVDLIFADPPYNLQLRGDLHRPDNSKVDAVDDAWDQFSSFAVYD 75

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FTR WL A RR+LKPNG +WVIGSYHNIFR+G  LQ+  FWILND+VWRKSNPMPNFRG
Sbjct: 76  KFTREWLKAARRLLKPNGAIWVIGSYHNIFRVGAALQDAGFWILNDVVWRKSNPMPNFRG 135

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +RF NAHET+IWA     +K YTFNY+ALKA NE +QMRSDW++PIC+G ERL+++ G+K
Sbjct: 136 KRFTNAHETMIWAGKDENSK-YTFNYEALKALNEGIQMRSDWVLPICTGHERLKDEMGDK 194

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE+LL RILV ST PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  +A 
Sbjct: 195 AHPTQKPESLLHRILVGSTNPGDVVLDPFFGTGTTGAVAKMLGRDFIGIEREEAYRKVAE 254

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KRI SV+      L   T KR EPRV F  LVERG+++PG+ L +  G  SA V ADGTL
Sbjct: 255 KRIKSVRKFDKEALQTTTSKRAEPRVPFGQLVERGMLRPGEELYSLNGRYSAKVRADGTL 314

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           +     GSIH+VGA    + +CNGW +W ++K G+   I+ LR  +R E+ N
Sbjct: 315 VGNEVKGSIHQVGAAYEKAPSCNGWTYWCYKKDGKRVPIDILRQQIRAEMAN 366


>gi|114764187|ref|ZP_01443425.1| modification methylase [Pelagibaca bermudensis HTCC2601]
 gi|114543339|gb|EAU46355.1| modification methylase [Roseovarius sp. HTCC2601]
          Length = 367

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 211/350 (60%), Positives = 269/350 (76%), Gaps = 2/350 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I+ G+ I ++  LPA+SVDLIFADPPYNLQL G L+RPD+S VDAV D WD+F+SFE YD
Sbjct: 15  ILAGDCIEMMNSLPAESVDLIFADPPYNLQLRGDLHRPDNSRVDAVDDHWDQFASFEVYD 74

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FTR WL A +R+LKPNG +WVIGSYHNIFR+G  LQ+  +WILND++WRKSNPMPNFRG
Sbjct: 75  RFTREWLAAAKRLLKPNGAIWVIGSYHNIFRVGAALQDAGYWILNDVIWRKSNPMPNFRG 134

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +RF NAHET+IWAS    AK YTFNY+ALKA NE +QMRSDW++PIC+G ERL++ +G+K
Sbjct: 135 KRFTNAHETMIWASKGEGAK-YTFNYEALKALNEGIQMRSDWVLPICNGGERLKDANGDK 193

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKP +LL R+LV ST PGD++LDPFFG+GT+GAVAK L R +IGIE +  Y ++A 
Sbjct: 194 AHPTQKPASLLHRVLVGSTNPGDVVLDPFFGTGTTGAVAKMLGRDWIGIEREAAYREVAE 253

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           +RIA V+      L V   KR EPRV F  LVERGL++PG++L +A G + A V ADGTL
Sbjct: 254 RRIADVRAYDRSSLEVTRAKRAEPRVPFGQLVERGLLRPGEMLVSANGKV-AKVRADGTL 312

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           +     GSIH+VGA + G+ +CNGW +W+F K G++  I+ LR  +R E+
Sbjct: 313 VGDDVKGSIHQVGAHLEGAPSCNGWTYWHFRKDGKVVPIDVLRQQIRAEM 362


>gi|163745411|ref|ZP_02152771.1| modification methylase [Oceanibulbus indolifex HEL-45]
 gi|161382229|gb|EDQ06638.1| modification methylase [Oceanibulbus indolifex HEL-45]
          Length = 366

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 216/352 (61%), Positives = 265/352 (75%), Gaps = 1/352 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I+ G+ I  +  LPA+SVDLIFADPPYNLQL G L+RPD+S VDAV D WD+F+SF+AYD
Sbjct: 16  IVAGDCIEAMNALPAESVDLIFADPPYNLQLRGDLHRPDNSKVDAVDDEWDQFASFKAYD 75

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FTRAWL A RR+LKP+G +WVIGSYHNIFR+G  LQ+  FWILND+VWRKSNPMPNFRG
Sbjct: 76  DFTRAWLKAARRLLKPDGAIWVIGSYHNIFRVGAALQDQGFWILNDVVWRKSNPMPNFRG 135

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +RF NAHET+IWA  S  +K YTFNY+ALKA NE +QMRSDW++PIC+G ERL++  G+K
Sbjct: 136 KRFTNAHETMIWAGKSENSK-YTFNYEALKALNEGIQMRSDWVLPICTGHERLKDDAGDK 194

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE+LL RILV ST PGD+ILDPFFG+GT+GAVAK L R FIGIE +  Y  +A 
Sbjct: 195 AHPTQKPESLLHRILVGSTNPGDVILDPFFGTGTTGAVAKMLGRDFIGIEREAAYRKVAE 254

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KRI+ V+   N  L   T KR EPRV F  LVERG+++PG+ L +  G   A V ADGTL
Sbjct: 255 KRISMVRKFDNEALQTTTSKRAEPRVPFGQLVERGMLRPGENLYSMNGRHKAKVRADGTL 314

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           I     GSIH+VGA    + +CNGW +W ++K G+   I+ LR  +R E+ N
Sbjct: 315 IGSDVKGSIHQVGAAYEKAPSCNGWTYWCYKKDGKNVPIDILRQQIRAEMAN 366


>gi|85705986|ref|ZP_01037082.1| modification methylase [Roseovarius sp. 217]
 gi|85669574|gb|EAQ24439.1| modification methylase [Roseovarius sp. 217]
          Length = 371

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 209/350 (59%), Positives = 270/350 (77%), Gaps = 1/350 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G+ I V+  LP  SVDLIFADPPYNLQL G L+RPD+S VDAV D+WD+F+SF AYD
Sbjct: 18  IIAGDCIEVMNSLPEASVDLIFADPPYNLQLKGDLHRPDNSQVDAVDDAWDQFASFAAYD 77

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FT  WL A RR+LKP+G +WVIGSYHNIFR+G  LQ+  +WILND++WRKSNPMPNFRG
Sbjct: 78  KFTHDWLKAARRLLKPHGAIWVIGSYHNIFRVGAALQDAGYWILNDVIWRKSNPMPNFRG 137

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +R  NAHET+IWAS S  AK YTFNY+ALK+ N+ VQMRSDW++P+C+G ERL++  G+K
Sbjct: 138 KRLTNAHETMIWASKSEGAK-YTFNYEALKSLNDGVQMRSDWVLPLCTGHERLKDDKGDK 196

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE+LL R+LV ST PGD+ILDPFFG+GT+GAVAK L R +IGIE +  Y  +A 
Sbjct: 197 AHPTQKPESLLHRVLVGSTNPGDVILDPFFGTGTTGAVAKMLGRDYIGIEREAAYRVVAE 256

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KR+AS++      L V T KR EPRV F  L+ERG+++PG++LT+  G  +A V ADGTL
Sbjct: 257 KRLASIRKFDRDALQVSTSKRAEPRVPFGQLIERGMLRPGEMLTSMNGKCAAKVRADGTL 316

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           ++ +  GSIH+VGA + G+ +CNGW +W F++ G++  I+ LR  +R E+
Sbjct: 317 VADSIKGSIHQVGAHLEGAPSCNGWTYWCFKREGKVVPIDVLRQQIRSEM 366


>gi|254417828|ref|ZP_05031552.1| DNA methylase domain protein [Brevundimonas sp. BAL3]
 gi|196184005|gb|EDX78981.1| DNA methylase domain protein [Brevundimonas sp. BAL3]
          Length = 369

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 211/350 (60%), Positives = 262/350 (74%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           KD I +G+ I+VL+ LP  SVD++FADPPYNLQL G L RPD+S VDAV D WDKF SF 
Sbjct: 16  KDVIHRGDCIAVLKSLPDASVDMVFADPPYNLQLGGDLLRPDNSKVDAVDDDWDKFDSFA 75

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YD FTRAWL  CRRVLKP G++WVIGSYHN+FR+G  +Q+L FW+LNDI+WRKSNPMPN
Sbjct: 76  EYDTFTRAWLTECRRVLKPEGSIWVIGSYHNVFRLGAAIQDLGFWVLNDIIWRKSNPMPN 135

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           F+G RF NAHETLIWA+ S + K YTFNYDALKA NED QMRSDW   +C+G ER+++ D
Sbjct: 136 FKGTRFTNAHETLIWAARSREQKRYTFNYDALKAFNEDTQMRSDWTFALCTGEERIKDAD 195

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKPEALL R+L+S+T+PGD++LDPFFG+GT+GA AK+L R +IGIE  + Y +
Sbjct: 196 GKKAHPTQKPEALLHRVLLSATRPGDVVLDPFFGTGTTGAAAKRLGRHYIGIERDETYAE 255

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A  RIASV P    +L V+  KR EP+V F  LVE GL+ PG  L   +G   A V AD
Sbjct: 256 VAETRIASVIPANPEDLMVMGSKRAEPKVPFGALVEAGLLHPGDRLYCPKGEREARVRAD 315

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVR 369
           G+L+SG+  GSIH++GA    +  CNGW +W F+    L SI+ LR  VR
Sbjct: 316 GSLVSGSLTGSIHKLGALFENAPACNGWTYWRFKTDQGLKSIDALRAEVR 365


>gi|144899369|emb|CAM76233.1| DNA methylase N-4/N-6 [Magnetospirillum gryphiswaldense MSR-1]
          Length = 357

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 215/354 (60%), Positives = 273/354 (77%), Gaps = 3/354 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I++G+ I+ +E LPAKSVDL+FADPPYNLQL G+L RP++S VD V D WD+F SF  
Sbjct: 6   DTILQGDCIAQMEALPAKSVDLVFADPPYNLQLGGELLRPNNSRVDGVDDDWDRFDSFRD 65

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL A RRVLK +G LWVIGSYHNIFR+G  LQ+L FW+LNDIVWRKSNPMPNF
Sbjct: 66  YDDFTRRWLAAARRVLKDDGALWVIGSYHNIFRVGASLQDLGFWMLNDIVWRKSNPMPNF 125

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG RF NAHETLIW + S +++ YTFNY+A+KA N+D+QMRSDW IP+C+GSERL+N DG
Sbjct: 126 RGTRFTNAHETLIWCAKSAESR-YTFNYEAMKALNDDLQMRSDWTIPLCTGSERLKN-DG 183

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K+HPTQKPE LL R+L+++TKPGD++LDPFFG+GT+GAVAKKL+R FIG E   DYI  
Sbjct: 184 TKVHPTQKPEMLLYRVLMATTKPGDVVLDPFFGTGTTGAVAKKLKRHFIGCERDPDYIKA 243

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILT-NAQGNISATVCAD 319
           A +RI+ V+P+  + L     K++EPRV F  +VERGL++ G +L  N + +++A V AD
Sbjct: 244 AQERISKVRPVSELSLLSTPSKKSEPRVPFGTVVERGLLEVGTVLYGNGKDSLTAKVRAD 303

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           GTLIS    GSIH+VGA V  +  CNGW FW+ ++  EL  I+ LR  +R EL+
Sbjct: 304 GTLISADHRGSIHKVGALVQNAPACNGWTFWHLKQGDELVPIDVLRQKIRAELH 357


>gi|86136900|ref|ZP_01055478.1| modification methylase [Roseobacter sp. MED193]
 gi|85826224|gb|EAQ46421.1| modification methylase [Roseobacter sp. MED193]
          Length = 389

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 215/352 (61%), Positives = 262/352 (74%), Gaps = 1/352 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G+ I V+  LP   +DLIFADPPYNLQL  QL+RPD+S VDAV D WD+FSSF AYD
Sbjct: 39  IIDGDCIDVMAGLPDNCIDLIFADPPYNLQLKNQLHRPDNSKVDAVDDHWDQFSSFAAYD 98

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FT  WL   RR+LKPNG +WVIGSYHNIFR+GT +Q+  FWILND+VWRKSNPMPNFRG
Sbjct: 99  DFTSRWLHQARRILKPNGAIWVIGSYHNIFRVGTAMQDEGFWILNDVVWRKSNPMPNFRG 158

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +R+ NAHET+IWAS S   K YTFNY+ALKA NE +QMRSDW++PIC+G ERL+N+DGEK
Sbjct: 159 KRYTNAHETMIWASKSEGGK-YTFNYEALKALNEGIQMRSDWVLPICTGHERLKNEDGEK 217

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE+LL RILV ST PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  +A 
Sbjct: 218 AHPTQKPESLLHRILVGSTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEQEESYRKVAA 277

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           +RI SV+      L V T KR EPRV F  LVERG+++PG  L +      A V ADGTL
Sbjct: 278 ERIKSVRKFDREALQVSTSKRAEPRVPFGQLVERGMLRPGDELYSMNQRHKAKVRADGTL 337

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           I     GSIH+VGA +  + +CNGW +W F++ G+   I+ LR  +R E+ N
Sbjct: 338 IGDNVKGSIHQVGAHLENAPSCNGWTYWCFKRDGQTVPIDVLRQQIRAEMQN 389


>gi|126728137|ref|ZP_01743953.1| modification methylase [Sagittula stellata E-37]
 gi|126711102|gb|EBA10152.1| modification methylase [Sagittula stellata E-37]
          Length = 365

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 209/352 (59%), Positives = 273/352 (77%), Gaps = 2/352 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I+ G+ I V+  LP  SVDLIFADPPYNLQL G+L+RPD+S VDAV D WD+FS+F A
Sbjct: 16  NQILDGDCIQVMNSLPEASVDLIFADPPYNLQLKGELHRPDNSRVDAVDDHWDQFSNFAA 75

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YDAFT+ WL A RR+LKP+G +WVIGSYHNIFR+G  LQ+  FWILND++WRK+NPMPNF
Sbjct: 76  YDAFTQDWLRAARRLLKPDGAIWVIGSYHNIFRVGAALQDAGFWILNDVIWRKANPMPNF 135

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+RF NAHET+IWAS S  AK YTFNY+ALK+ NE +QMRSDW++PIC+G ERL++ +G
Sbjct: 136 RGKRFTNAHETMIWASKSEGAK-YTFNYEALKSLNEGIQMRSDWVLPICNGGERLKDANG 194

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKP++LL R++V ST PGD++LDPFFG+GT+GAVAK L R +IGIE +  Y ++
Sbjct: 195 DKAHPTQKPQSLLHRVIVGSTNPGDVVLDPFFGTGTTGAVAKMLGRDWIGIEREAAYREV 254

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KR+  V+      L V T KR EPRV F  LVERG+++PG++L N +G + A V ADG
Sbjct: 255 ALKRLGDVRAFDKGALEVSTSKRAEPRVPFGQLVERGMLRPGEMLINGRGQM-AKVRADG 313

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           TL+     GSIH+VGAK+ G+ +CNGW +W+F + G+   I+ LR  +R E+
Sbjct: 314 TLVGDGVTGSIHQVGAKLEGAPSCNGWTYWHFRRDGKTVPIDVLRQQIRSEM 365


>gi|326387696|ref|ZP_08209302.1| DNA methylase N-4/N-6 [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207742|gb|EGD58553.1| DNA methylase N-4/N-6 [Novosphingobium nitrogenifigens DSM 19370]
          Length = 388

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 204/347 (58%), Positives = 270/347 (77%), Gaps = 1/347 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I++G+ I  +  LP  S+D+IFADPPYNLQL G L RPD S VDAVT+ WDKF SF A
Sbjct: 36  NQILRGDCIEQMRALPTASIDMIFADPPYNLQLGGDLARPDGSHVDAVTNDWDKFDSFAA 95

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YDAFTR WL   RR+LKP+G++WVIGSYHNIFR+G +LQ++ FWILNDIVWRK+NPMPNF
Sbjct: 96  YDAFTREWLAEARRLLKPDGSIWVIGSYHNIFRVGAILQDMGFWILNDIVWRKANPMPNF 155

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWAS S K+K YTFNY A+K  N+++QMRSDW++PICSG ERLRNK G
Sbjct: 156 KGTRFTNAHETLIWASRSEKSK-YTFNYRAMKTLNDELQMRSDWVLPICSGQERLRNKRG 214

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K HPTQKPE+LL R+++++T PGD++LDPFFG+GT+GAVAK+L R +IG E ++ YI++
Sbjct: 215 AKAHPTQKPESLLYRVMLATTNPGDVVLDPFFGTGTTGAVAKRLGRHWIGCEREEGYIEV 274

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A +RI    PL    L  +  ++++PRVAF  LVE G I+PG +L++ +G    TV ADG
Sbjct: 275 AEERIEMALPLDETALKTMQSRKSQPRVAFGQLVESGWIRPGAVLSDRKGRYCVTVRADG 334

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRIL 367
           ++++G + GSIH +GAK+ G+ +CNGW FW+ E  G++  I+ LR L
Sbjct: 335 SIMAGDDSGSIHGIGAKLQGAPSCNGWTFWHIEHEGQVKQIDALRQL 381


>gi|254465616|ref|ZP_05079027.1| modification methylase SmeIP [Rhodobacterales bacterium Y4I]
 gi|206686524|gb|EDZ47006.1| modification methylase SmeIP [Rhodobacterales bacterium Y4I]
          Length = 367

 Score =  458 bits (1179), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 213/352 (60%), Positives = 267/352 (75%), Gaps = 1/352 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G+ I  +  LPA SVDLIFADPPYNLQL GQL+RPD+S VDAV D WD+FSSF AYD
Sbjct: 17  IIGGDCIEAMNSLPANSVDLIFADPPYNLQLKGQLHRPDNSKVDAVDDHWDQFSSFAAYD 76

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FTR WL A RRVLKPNG++WVIGSYHNIFR+G +LQ+  +W+LND++WRKSNPMPNFRG
Sbjct: 77  QFTREWLKAARRVLKPNGSIWVIGSYHNIFRVGALLQDEGYWVLNDVIWRKSNPMPNFRG 136

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +RF NAHET+IWAS S  AK YTFNY+ALKA NE +QMRSDW++PIC+G ER+++++G+K
Sbjct: 137 KRFTNAHETMIWASKSEGAK-YTFNYEALKALNEGIQMRSDWVLPICTGHERIKDENGDK 195

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE+LL RILV +T PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  +A 
Sbjct: 196 AHPTQKPESLLHRILVGATNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREEAYRKVAE 255

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KRI +V+      L V   KR  PRV F  LVERG+++PG+ L +      A V ADGTL
Sbjct: 256 KRIKAVRKFDREALEVSASKRAAPRVPFGQLVERGMLRPGEELYSMNRRHKAKVRADGTL 315

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           I     GSIH+VGA +  + +CNGW +W F++ G+   I+ LR  +R E+ N
Sbjct: 316 IGDNIKGSIHQVGAHLENAPSCNGWTYWCFKRDGKTVPIDVLRQQIRAEMQN 367


>gi|167648322|ref|YP_001685985.1| DNA methylase N-4/N-6 domain-containing protein [Caulobacter sp.
           K31]
 gi|167350752|gb|ABZ73487.1| DNA methylase N-4/N-6 domain protein [Caulobacter sp. K31]
          Length = 358

 Score =  458 bits (1179), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 214/352 (60%), Positives = 263/352 (74%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + II+G+ I  +  LP KSVDLIFADPPYNLQL G L RPD+S VDAV D WD+F SF A
Sbjct: 6   ETIIQGDCIEAMNALPEKSVDLIFADPPYNLQLGGDLLRPDNSKVDAVDDHWDQFESFAA 65

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL A RRVLK +G +WVIGSYHNIFR+G  +Q+L FWILND++WRKSNPMPNF
Sbjct: 66  YDKFTREWLKAARRVLKDDGAIWVIGSYHNIFRVGVAVQDLGFWILNDVIWRKSNPMPNF 125

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWAS S  AK YTFNYDALK AN++VQMRSDW +P+C+G ER++  DG
Sbjct: 126 KGTRFANAHETLIWASKSQGAKRYTFNYDALKMANDEVQMRSDWTLPLCTGEERIKGADG 185

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K HPTQKPEALL R+++S+TKPGD+ILDPFFG GT+GA AK+L R F+GIE + DYI+ 
Sbjct: 186 NKAHPTQKPEALLYRVILSTTKPGDVILDPFFGVGTTGAAAKRLGRRFVGIERESDYIEH 245

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  RIA V P+   +L V+  KR+EPRV F  +VE GL+ PG  L  A+G+ +A V ADG
Sbjct: 246 AKARIAKVVPIAPGDLDVMGSKRSEPRVPFGNIVEAGLLNPGDTLYCAKGSHAAKVRADG 305

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           ++  G   GSIH+VGA V  +  CNGW +W+F+    L  I+ LR  VR  +
Sbjct: 306 SITVGDLSGSIHKVGALVQSAPACNGWTYWHFKTDKGLAPIDVLRSQVRAGM 357


>gi|84515025|ref|ZP_01002388.1| modification methylase [Loktanella vestfoldensis SKA53]
 gi|84511184|gb|EAQ07638.1| modification methylase [Loktanella vestfoldensis SKA53]
          Length = 385

 Score =  458 bits (1179), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 213/350 (60%), Positives = 268/350 (76%), Gaps = 1/350 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G+ I+V+  LPA SVDLIFADPPYNLQL G L+RP++S VDAV D+WD+F SF AYD
Sbjct: 34  IIDGDCIAVMNSLPAGSVDLIFADPPYNLQLKGDLHRPNNSKVDAVDDAWDQFDSFAAYD 93

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FT+AWL A RR+LKPNG +WVIGSYHN+FR+G  LQN  FWILND+VWRKSNPMPNFRG
Sbjct: 94  RFTKAWLAAARRLLKPNGAIWVIGSYHNVFRMGAELQNQGFWILNDVVWRKSNPMPNFRG 153

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +R  NAHETLIWAS    +K YTFNY+ALK+ NE VQMRSDW++PIC+G ERL++  G+K
Sbjct: 154 KRLTNAHETLIWASKEEASK-YTFNYEALKSLNEGVQMRSDWVLPICTGHERLKDDQGDK 212

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKP++LL R++V +T PGD+ILDPFFG+GT+GAVAK L R FIGIE +  Y  +A 
Sbjct: 213 AHPTQKPQSLLHRVIVGTTNPGDVILDPFFGTGTTGAVAKMLGRDFIGIEREAAYRKVAE 272

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KRIA+ +      L V + KR+EPRVAF +LVERG+++PG+ L +  G   A V ADGTL
Sbjct: 273 KRIANTRKFDTEALEVSSSKRSEPRVAFGVLVERGMLRPGEELWSMNGRHKAKVRADGTL 332

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           I     GSIH+VGA + G+ +CNGW +W F++ G+   I+ LR  +R E+
Sbjct: 333 IGDDIKGSIHQVGAHLEGAPSCNGWTYWQFKRDGQKVPIDLLRQQIRSEM 382


>gi|99082489|ref|YP_614643.1| DNA methylase N-4/N-6 [Ruegeria sp. TM1040]
 gi|99038769|gb|ABF65381.1| DNA methylase N-4/N-6 [Ruegeria sp. TM1040]
          Length = 389

 Score =  458 bits (1179), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 214/350 (61%), Positives = 264/350 (75%), Gaps = 1/350 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I+ G+ I  +  LP+ S+D+IFADPPYNLQL GQL+RPD+S VDAV D WD+FSSF  YD
Sbjct: 39  ILDGDCIERMASLPSNSIDMIFADPPYNLQLKGQLHRPDNSKVDAVDDEWDQFSSFGVYD 98

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FTRAWL   RR+LKPNG LWVIGSYHNIFR+GT LQ+  FWILND+VWRKSNPMPNFRG
Sbjct: 99  QFTRAWLKEARRILKPNGALWVIGSYHNIFRVGTALQDEGFWILNDVVWRKSNPMPNFRG 158

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +R+ NAHET+IWAS S  AK YTFNY+ALKA NE +QMRSDW++PIC+G ERL++ +G+K
Sbjct: 159 KRYTNAHETMIWASKSEGAK-YTFNYEALKALNEGIQMRSDWVMPICTGHERLKDANGDK 217

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPEALL RILV ST PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  +A 
Sbjct: 218 AHPTQKPEALLHRILVGSTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREEAYRKVAE 277

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           +RI +V+      L V   KR EPRV F  LVERG+++PG+ L +      A V ADGTL
Sbjct: 278 ERIKNVRKFDREALQVSASKRAEPRVPFGQLVERGMLRPGEELYSMNRRHKAKVRADGTL 337

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           I     GSIH+VGA +  + +CNGW +W F+K G+   I+ LR  +R E+
Sbjct: 338 IGDNIKGSIHQVGAHLENAPSCNGWTYWCFKKDGKTVPIDVLRQQIRAEM 387


>gi|110677702|ref|YP_680709.1| modification methylase [Roseobacter denitrificans OCh 114]
 gi|109453818|gb|ABG30023.1| modification methylase [Roseobacter denitrificans OCh 114]
          Length = 364

 Score =  457 bits (1177), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 214/350 (61%), Positives = 267/350 (76%), Gaps = 2/350 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G+ I V+  LP  SVDLIFADPPYNLQL G L+RPD+S VDAV D WD+FSSF+AYD
Sbjct: 15  IIDGDCIEVMNGLPEASVDLIFADPPYNLQLKGDLHRPDNSRVDAVDDEWDQFSSFKAYD 74

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FT+AWL A RR+LKP+G +WVIGSYHNIFR+G  LQN  +WILND+VWRKSNPMPNFRG
Sbjct: 75  NFTKAWLKAARRILKPDGAIWVIGSYHNIFRVGAELQNQGYWILNDVVWRKSNPMPNFRG 134

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +RF NAHET+IWA     +K YTFNY+ALKA NE +QMRSDW++PIC+G ERL++++G+K
Sbjct: 135 KRFTNAHETMIWAGRDESSK-YTFNYEALKALNEGIQMRSDWVLPICTGHERLKDENGDK 193

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE+LL R+LV +T PGD+ILDPFFG+GT+GAVAK L R FIGIE +  Y  +A 
Sbjct: 194 AHPTQKPESLLHRVLVGATNPGDVILDPFFGTGTTGAVAKMLGRDFIGIEREAAYRKVAE 253

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KRIA V+      L V   KR EPRV F  LVERG+++PG+ L + +G + A V ADGTL
Sbjct: 254 KRIAKVRKFDREALQVSVSKRAEPRVPFGQLVERGMLRPGEALYSPRGQV-AKVRADGTL 312

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           I     GSIH+VGA + G+ +CNGW +W F++ G+   I+ LR  +R E+
Sbjct: 313 IGNDVKGSIHQVGAHLEGAPSCNGWTYWTFKQDGKKIPIDVLRQQIRSEM 362


>gi|163733085|ref|ZP_02140529.1| modification methylase [Roseobacter litoralis Och 149]
 gi|161393620|gb|EDQ17945.1| modification methylase [Roseobacter litoralis Och 149]
          Length = 366

 Score =  457 bits (1177), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 213/352 (60%), Positives = 267/352 (75%), Gaps = 2/352 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G+ I V+  LP  SVDLIFADPPYNLQL G L+RPD+S VDAV D WD+F+SF+ YD
Sbjct: 17  IIDGDCIEVMNGLPEASVDLIFADPPYNLQLKGDLHRPDNSRVDAVDDEWDQFASFKVYD 76

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FT+AWL A RR+LKP+G +WVIGSYHNIFR+G  LQN  +WILND+VWRKSNPMPNFRG
Sbjct: 77  DFTKAWLKAARRILKPDGAIWVIGSYHNIFRVGAELQNQGYWILNDVVWRKSNPMPNFRG 136

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +RF NAHET+IWA     +K YTFNY+ALKA NE +QMRSDW++PIC+G ERL++++G+K
Sbjct: 137 KRFTNAHETMIWAGRDESSK-YTFNYEALKALNEGIQMRSDWVLPICTGHERLKDENGDK 195

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE+LL R+LV +T PGD+ILDPFFG+GT+GAVAK L R FIGIE +  Y  +A 
Sbjct: 196 AHPTQKPESLLHRVLVGATNPGDVILDPFFGTGTTGAVAKMLGRDFIGIEREAAYRKVAE 255

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KRIA V+      L V   KR EPRV F  LVERG+++PG+ L + +G + A V ADGTL
Sbjct: 256 KRIAKVRKFDREALQVSVSKRAEPRVPFGQLVERGMLRPGEALYSPRGQV-AKVRADGTL 314

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           I     GSIH+VGA + G+ +CNGW +W F++ G+   I+ LR  +R E+ N
Sbjct: 315 IGNDVKGSIHQVGAHLEGAPSCNGWTYWTFKQDGKKVPIDVLRQQIRSEMTN 366


>gi|259417500|ref|ZP_05741419.1| modification methylase CcrMI [Silicibacter sp. TrichCH4B]
 gi|259346406|gb|EEW58220.1| modification methylase CcrMI [Silicibacter sp. TrichCH4B]
          Length = 385

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 213/350 (60%), Positives = 264/350 (75%), Gaps = 1/350 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I+ G+ I  +  LP+ S+D+IFADPPYNLQL GQL+RPD+S VDAV D WD+FSSF  YD
Sbjct: 35  ILDGDCIERMASLPSNSIDMIFADPPYNLQLKGQLHRPDNSRVDAVDDEWDQFSSFGVYD 94

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FTRAWL   RR+LKPNG LWVIGSYHNIFR+G+ LQ+  FWILND+VWRKSNPMPNFRG
Sbjct: 95  QFTRAWLKEARRILKPNGALWVIGSYHNIFRVGSALQDEGFWILNDVVWRKSNPMPNFRG 154

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +R+ NAHET+IWAS S  AK YTFNY+ALKA NE +QMRSDW++PIC+G ERL++ +G+K
Sbjct: 155 KRYTNAHETMIWASKSEGAK-YTFNYEALKALNEGIQMRSDWVMPICTGHERLKDANGDK 213

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPEALL RILV ST PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  +A 
Sbjct: 214 AHPTQKPEALLHRILVGSTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREESYRKVAE 273

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           +RI +V+      L V   KR EPRV F  LVERG+++PG+ L +      A V ADGTL
Sbjct: 274 ERIKNVRKFDREALQVSASKRAEPRVPFGQLVERGMLRPGEELYSMNRRHKAKVRADGTL 333

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           I     GSIH+VGA +  + +CNGW +W F+K G+   I+ LR  +R E+
Sbjct: 334 IGDNIKGSIHQVGAHLENAPSCNGWTYWCFKKDGKTVPIDVLRQQIRAEM 383


>gi|307941627|ref|ZP_07656982.1| modification methylase SmeI [Roseibium sp. TrichSKD4]
 gi|307775235|gb|EFO34441.1| modification methylase SmeI [Roseibium sp. TrichSKD4]
          Length = 372

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 211/363 (58%), Positives = 275/363 (75%), Gaps = 1/363 (0%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           ++  N    W + I +G+ +S LE+LP+KSVDL+FADPPYNLQL G L RPD S VDA  
Sbjct: 9   SQGSNPEPSWLNTIHRGDCVSALERLPSKSVDLVFADPPYNLQLGGDLMRPDDSKVDACD 68

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
           D WD+F+SFEAYDAFTRAWLLA RRV+KP+G+L+VIGSYHNIFR+G +LQ+L FWI+NDI
Sbjct: 69  DHWDQFASFEAYDAFTRAWLLAVRRVMKPDGSLYVIGSYHNIFRVGAILQDLGFWIMNDI 128

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
           +W KSNPMPNFRG+RF NAHET+IWA+ S  AK  TFNYDALK  N+D+QMRSDW +P+C
Sbjct: 129 IWLKSNPMPNFRGKRFTNAHETIIWATKSKDAKP-TFNYDALKTFNDDLQMRSDWQLPLC 187

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           +G ERL+++ G+K+HPTQKPEALL R+L +S+ PGD++LDPFFG+GT+GAVAKKL R+++
Sbjct: 188 TGGERLKDEAGQKVHPTQKPEALLYRVLTASSTPGDVVLDPFFGTGTTGAVAKKLGRNYV 247

Query: 250 GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQ 309
           G+E ++DYI  A  R+A++ P     L +  GKR E R+ F  L+E GL++PG  L+ A+
Sbjct: 248 GVEREEDYIRHAEARLAAITPGDAETLEMQKGKRAEKRIPFGSLLETGLMKPGTELSCAK 307

Query: 310 GNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVR 369
           G   A V ADG+L  G   GSIH+VGA V G ++CNGW FW+         I++LR  +R
Sbjct: 308 GQHLAVVRADGSLKCGNHTGSIHKVGALVQGQQSCNGWTFWHVGSGKTRTPIDSLRQDLR 367

Query: 370 KEL 372
             L
Sbjct: 368 SRL 370


>gi|159042580|ref|YP_001531374.1| adenine-specific methyltransferase [Dinoroseobacter shibae DFL 12]
 gi|157910340|gb|ABV91773.1| adenine-specific methyltransferase [Dinoroseobacter shibae DFL 12]
          Length = 368

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 208/352 (59%), Positives = 272/352 (77%), Gaps = 2/352 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I+ G+ I V+  LP  SVDLIFADPPYNLQL G L+RPD+S VDAV D+WD+F+SF++
Sbjct: 16  NEILAGDCIEVMNSLPEASVDLIFADPPYNLQLKGDLHRPDNSKVDAVDDAWDRFASFDS 75

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD F+  WL A RR+LKPNG +WVIGSYHNIFR+G  LQN  +WILND+VWRKSNPMPNF
Sbjct: 76  YDRFSADWLAAARRLLKPNGAIWVIGSYHNIFRVGAALQNTGYWILNDVVWRKSNPMPNF 135

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+R  NAHETLIWAS S  AK YTFNY+ALK  NE +QMRSDW++PIC+G ERL+++ G
Sbjct: 136 RGKRLTNAHETLIWASKSEGAK-YTFNYEALKQLNEGIQMRSDWVLPICTGHERLKDEAG 194

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPE+LL R++V++T PGD++LDPFFG+GT+GAVAKKL R FIGIE ++ Y  +
Sbjct: 195 DKAHPTQKPESLLHRVIVATTNPGDVVLDPFFGTGTTGAVAKKLGRDFIGIEREEAYRKV 254

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  R+A V+      L V   KR+EPRV F  LVERG+++PG++LT+  G + A V ADG
Sbjct: 255 AEARLADVRKYDRESLAVTQSKRSEPRVPFGQLVERGMLRPGEVLTSPGGKV-AKVRADG 313

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           TL++    GSIH+VGA +  + +CNGW +W+F++ G+   I+ LR  +R E+
Sbjct: 314 TLVADQVAGSIHQVGAALEHAPSCNGWTYWHFKRDGKSVPIDLLRQQIRAEM 365


>gi|148253825|ref|YP_001238410.1| DNA adenine methylase CcrM [Bradyrhizobium sp. BTAi1]
 gi|146405998|gb|ABQ34504.1| DNA adenine methylase CcrM [Bradyrhizobium sp. BTAi1]
          Length = 344

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 212/341 (62%), Positives = 264/341 (77%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           + KLP  SVDL+FADPPYNLQL G+L RPD S VDAV D WDKFSSF AYD FTRAWLLA
Sbjct: 1   MSKLPGASVDLVFADPPYNLQLKGELKRPDESQVDAVDDDWDKFSSFAAYDDFTRAWLLA 60

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
            RR++KP+ T+WVIGSYHNIFR+G ++Q+L FWILNDIVWRKSNPMPNFRGRRF NAHET
Sbjct: 61  ARRLMKPSATIWVIGSYHNIFRVGAIMQDLGFWILNDIVWRKSNPMPNFRGRRFTNAHET 120

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           +IWA+   KAKGYTFNY+ALKA+NEDVQ RSDWLIP+C+G ERL++ DG+K+HPTQKPE 
Sbjct: 121 MIWAARDEKAKGYTFNYEALKASNEDVQARSDWLIPLCTGEERLKDADGKKVHPTQKPEG 180

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           LL+R+L+SS+KPGD+++DPF G+GT+GAVAK+L R +IG E  + Y + A +RIA+V+PL
Sbjct: 181 LLARVLLSSSKPGDLVIDPFNGTGTTGAVAKRLGRRYIGFERDKTYAEAAERRIAAVEPL 240

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSI 331
               L      R  PRVAF+ L+ERG+I PG  L +++    A V ADG ++ G ++GSI
Sbjct: 241 PEATLVPFMTAREAPRVAFSELIERGMISPGTKLVDSKRRHGALVRADGAIMLGDKVGSI 300

Query: 332 HRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           HR+GA   G   CNGW FW+ E    L  I+ LR  +R E+
Sbjct: 301 HRIGAVAQGLPACNGWTFWHVETTRGLKLIDELRAEIRAEM 341


>gi|146339056|ref|YP_001204104.1| adenine DNA methyltransferase [Bradyrhizobium sp. ORS278]
 gi|146191862|emb|CAL75867.1| adenine DNA methyltransferase [Bradyrhizobium sp. ORS278]
          Length = 344

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 213/341 (62%), Positives = 264/341 (77%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           + KLP  SVDL+FADPPYNLQL G+L RPD S VDAV D WDKFSSF AYD FTRAWLLA
Sbjct: 1   MSKLPGASVDLVFADPPYNLQLKGELKRPDESQVDAVDDDWDKFSSFTAYDDFTRAWLLA 60

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
            RRV+KP+ T+WVIGSYHNIFR+G ++Q+L FWILNDIVWRKSNPMPNFRGRRF NAHET
Sbjct: 61  ARRVMKPSATIWVIGSYHNIFRVGAIMQDLGFWILNDIVWRKSNPMPNFRGRRFTNAHET 120

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           +IWA+   KAKGYTFNY+ALKA+NEDVQ RSDWLIP+C+G ERL++ DG+K+HPTQKPE 
Sbjct: 121 MIWAARDEKAKGYTFNYEALKASNEDVQARSDWLIPLCTGEERLKDGDGKKVHPTQKPEG 180

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           LL+R+L+SS+K GD+++DPF G+GT+GAVAK+L R +IG E  + Y + A +RIA+V+PL
Sbjct: 181 LLARVLLSSSKQGDLVIDPFNGTGTTGAVAKRLGRRYIGFERDKAYAEAAERRIAAVEPL 240

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSI 331
               L      R  PRVAF+ L+ERG+I PG  L +++    A V ADG ++ G ++GSI
Sbjct: 241 PAETLAPFMTAREAPRVAFSELIERGMIAPGAKLVDSKRRYGALVRADGAIMLGDKVGSI 300

Query: 332 HRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           HR+GA   G   CNGW FW+ E  G L  I+ LR  +R E+
Sbjct: 301 HRIGAVAQGLPACNGWTFWHVETKGGLRLIDELRAEIRSEM 341


>gi|163739876|ref|ZP_02147283.1| DNA methylase N-4/N-6 [Phaeobacter gallaeciensis BS107]
 gi|163743379|ref|ZP_02150759.1| modification methylase [Phaeobacter gallaeciensis 2.10]
 gi|161383373|gb|EDQ07762.1| modification methylase [Phaeobacter gallaeciensis 2.10]
 gi|161386910|gb|EDQ11272.1| DNA methylase N-4/N-6 [Phaeobacter gallaeciensis BS107]
          Length = 367

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/352 (61%), Positives = 263/352 (74%), Gaps = 1/352 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I+ G+ I V+  LP+ SVDLIFADPPYNLQL GQL+RPD+S VDAV D WD+FSSF  YD
Sbjct: 17  ILDGDCIEVMSGLPSNSVDLIFADPPYNLQLKGQLHRPDNSKVDAVDDHWDQFSSFGVYD 76

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FTR WL   RR+LKPNG++WVIGSYHNIFR+GT +Q+  FWILND++WRKSNPMPNFRG
Sbjct: 77  KFTRDWLKQARRILKPNGSIWVIGSYHNIFRVGTAVQDEGFWILNDVIWRKSNPMPNFRG 136

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +R+ NAHET+IWAS S  AK YTFNY+ALKA NE +QMRSDW++PIC+G ERL++  G K
Sbjct: 137 KRYTNAHETMIWASKSEGAK-YTFNYEALKALNEGLQMRSDWVMPICTGHERLKDDAGNK 195

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPEALL RILV ST PGD++LDPFFG+GT+GAVAK L R FIGIE +  Y ++A 
Sbjct: 196 AHPTQKPEALLHRILVGSTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREAAYREVAE 255

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KRI SV+      L V   KR EPRV F  LVERG+++PG  L +      A V ADGTL
Sbjct: 256 KRIKSVRKFDREALQVSASKRAEPRVPFGQLVERGMLRPGDELYSMNRRHKAKVRADGTL 315

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           I     GSIH+VGA +  + +CNGW +W F++ G+   I+ LR  +R EL N
Sbjct: 316 IGDNIKGSIHQVGAHLENAPSCNGWTYWCFKRDGKTVPIDVLRQQIRAELQN 367


>gi|83945340|ref|ZP_00957688.1| modification methylase [Oceanicaulis alexandrii HTCC2633]
 gi|83851174|gb|EAP89031.1| modification methylase [Oceanicaulis alexandrii HTCC2633]
          Length = 364

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 210/352 (59%), Positives = 265/352 (75%), Gaps = 1/352 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I++G+   V++ LP +SVDLIFADPPYNLQL G L+RPD+S VDAV + WD+   F+A
Sbjct: 12  DVILEGDCAEVMKTLPDESVDLIFADPPYNLQLGGDLHRPDNSKVDAVDNDWDQIGDFDA 71

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD F+ AWL   RRVLKPNG LW IGSYHNIFR+G  LQ++ FWILND++WRKSNPMPNF
Sbjct: 72  YDLFSCAWLEEARRVLKPNGALWTIGSYHNIFRVGAFLQDMGFWILNDVIWRKSNPMPNF 131

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWAS +  AK  TFNY A+KA N+ VQMRSDW +PIC+G ERL+NKDG
Sbjct: 132 KGTRFTNAHETLIWASKTKDAK-PTFNYAAMKALNDGVQMRSDWTLPICAGGERLKNKDG 190

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPE+LL R+L++++ PGD++LDPFFG+GT+GAVAKKL R +IGIE    Y D+
Sbjct: 191 KKAHPTQKPESLLHRVLLATSNPGDVVLDPFFGTGTTGAVAKKLGRHYIGIEADPGYADV 250

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KRIA++ P     L V   KR  PR+ F  LVE GL++PG  L  AQG  +A V ADG
Sbjct: 251 ARKRIAAINPTSEDLLQVTQSKRALPRIPFGSLVEAGLLKPGDTLYCAQGRRTAQVRADG 310

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           T+I+G + GSIH++GA V G+ +CNGW FW+  + G L  I+ LR  +R E+
Sbjct: 311 TVIAGGQAGSIHQMGAHVQGAPSCNGWTFWHVRQGGALAPIDVLRARIRAEM 362


>gi|254461867|ref|ZP_05075283.1| modification methylase SmeIP [Rhodobacterales bacterium HTCC2083]
 gi|206678456|gb|EDZ42943.1| modification methylase SmeIP [Rhodobacteraceae bacterium HTCC2083]
          Length = 371

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 212/350 (60%), Positives = 264/350 (75%), Gaps = 1/350 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I  G+ I V+  LP  S+DLIFADPPYNLQL G L+RPD+S VDAV D WD+FSSF AYD
Sbjct: 18  IQSGDCIEVMNSLPENSIDLIFADPPYNLQLKGDLHRPDNSRVDAVDDHWDQFSSFAAYD 77

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FT+ WL A RR+LKPNG +WVIGSYHNIFR+G+ LQN  +WILND+VWRKSNPMPNFRG
Sbjct: 78  KFTQDWLKAARRLLKPNGAIWVIGSYHNIFRVGSALQNEGYWILNDVVWRKSNPMPNFRG 137

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +RF NAHET+IWAS S  AK YTFNY+ALK+ NE +QMRSDW++PIC+G ERL+++ GEK
Sbjct: 138 KRFTNAHETMIWASKSEGAK-YTFNYEALKSLNEGIQMRSDWVLPICTGHERLKDEAGEK 196

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE+LL R+L+ ST PGD++LDPFFG+GT+GAVAK L R +IGIE +  Y  +A 
Sbjct: 197 AHPTQKPESLLHRVLIGSTNPGDVVLDPFFGTGTTGAVAKMLGREYIGIEREAAYRKVAE 256

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KRI +V+      L V T KR EPRV F  LVERG+++PG+ L +      A V ADGTL
Sbjct: 257 KRIKAVRKFDREALRVSTSKRAEPRVPFGQLVERGMLRPGENLYSMNNRHKAKVRADGTL 316

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           I     GSIH+VGA + G+ +CNGW +W F++ G+   I+ LR  +R E+
Sbjct: 317 IGDDVKGSIHQVGAALEGAPSCNGWTYWSFKRDGKTVPIDVLRQQIRSEM 366


>gi|254476528|ref|ZP_05089914.1| modification methylase SmeIP [Ruegeria sp. R11]
 gi|214030771|gb|EEB71606.1| modification methylase SmeIP [Ruegeria sp. R11]
          Length = 374

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 214/352 (60%), Positives = 264/352 (75%), Gaps = 1/352 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I+ G+ I V+  LP+ SVD+IFADPPYNLQL GQL+RPD+S VDAV D WD+FSSF  YD
Sbjct: 24  ILDGDCIEVMAGLPSNSVDMIFADPPYNLQLKGQLHRPDNSKVDAVDDHWDQFSSFGVYD 83

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FTR WL   RR+LKPNG++WVIGSYHNIFR+GT +Q+  FWILND++WRKSNPMPNFRG
Sbjct: 84  KFTRDWLKEARRILKPNGSIWVIGSYHNIFRVGTAMQDEGFWILNDVIWRKSNPMPNFRG 143

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +RF NAHET+IWAS S  AK YTFNY+ALKA NE +QMRSDW++PIC+G ERL++  G K
Sbjct: 144 KRFTNAHETMIWASKSEGAK-YTFNYEALKALNEGLQMRSDWVLPICTGHERLKDDAGNK 202

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE+LL RIL+ ST PGD++LDPFFG+GT+GAVAK L R FIGIE +  Y ++A 
Sbjct: 203 AHPTQKPESLLHRILLGSTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREATYREVAE 262

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KRI SV+      L V   KR EPRV F  LVERG+++PG+ L +      A V ADGTL
Sbjct: 263 KRIKSVRKFDREALQVSASKRAEPRVPFGQLVERGMLRPGEELYSMNRRHKAKVRADGTL 322

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           I     GSIH+VGA +  + +CNGW +W F++ G+   I+ LR  +R EL N
Sbjct: 323 IGDNIKGSIHQVGAHLENAPSCNGWTYWCFKRDGKTVPIDVLRQQIRAELQN 374


>gi|84502791|ref|ZP_01000904.1| modification methylase [Oceanicola batsensis HTCC2597]
 gi|84388774|gb|EAQ01644.1| modification methylase [Oceanicola batsensis HTCC2597]
          Length = 363

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 212/350 (60%), Positives = 265/350 (75%), Gaps = 2/350 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I+ G+ I  +  LP  SVDLIFADPPYNLQL GQL+RPD+S VDAV D WD+F SF AYD
Sbjct: 15  ILAGDCIEQMNALPEASVDLIFADPPYNLQLKGQLHRPDNSEVDAVDDHWDQFDSFAAYD 74

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FTR WL A RR+LKP+G +WVIGSYHNIFR+G  LQ+  +WILND+VWRKSNPMPNFRG
Sbjct: 75  RFTRDWLAAARRLLKPDGAIWVIGSYHNIFRVGAALQDAGYWILNDVVWRKSNPMPNFRG 134

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +RF NAHET+IWAS S  AK YTFNY+ALK+ NE +QMRSDW++PIC+G ERL++  G+K
Sbjct: 135 KRFTNAHETMIWASKSEGAK-YTFNYEALKSLNEGIQMRSDWVLPICNGGERLKDAKGDK 193

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPEALL R+LV ST PGD++LDPFFG+GT+GAVAK L R +IGIE ++ Y  +A 
Sbjct: 194 AHPTQKPEALLHRVLVGSTNPGDVVLDPFFGTGTTGAVAKMLGREYIGIEREEAYRKVAE 253

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
            RI+ V+      L V T KR EPRV F  LVERG+++PG+ L N +G  +A V ADGTL
Sbjct: 254 ARISKVRKFDRDALIVSTSKRAEPRVPFGQLVERGMLRPGETLVNTRGQ-AARVRADGTL 312

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
            +    GSIH+VGA + G+ +CNGW +W+F K G+   I+ +R  +R E+
Sbjct: 313 ATDGFNGSIHQVGAHIEGAPSCNGWTYWHFLKDGKTIPIDLMRQQIRAEM 362


>gi|16124633|ref|NP_419197.1| modification methylase CcrMI [Caulobacter crescentus CB15]
 gi|221233321|ref|YP_002515757.1| adenine-specific methyltransferase ccrM [Caulobacter crescentus
           NA1000]
 gi|239977504|sp|B8GZ33|MTC1_CAUCN RecName: Full=Modification methylase CcrMI; Short=M.CcrMI; AltName:
           Full=Adenine-specific methyltransferase CcrMI
 gi|239977505|sp|P0CAW2|MTC1_CAUCR RecName: Full=Modification methylase CcrMI; Short=M.CcrMI; AltName:
           Full=Adenine-specific methyltransferase CcrMI
 gi|13421535|gb|AAK22365.1| modification methylase CcrMI [Caulobacter crescentus CB15]
 gi|220962493|gb|ACL93849.1| adenine-specific methyltransferase ccrM [Caulobacter crescentus
           NA1000]
          Length = 358

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 213/349 (61%), Positives = 258/349 (73%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + II G+ I  +  LP KSVDLIFADPPYNLQL G L RPD+S VDAV D WD+F SF A
Sbjct: 6   ETIIHGDCIEQMNALPEKSVDLIFADPPYNLQLGGDLLRPDNSKVDAVDDHWDQFESFAA 65

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL A RRVLK +G +WVIGSYHNIFR+G  +Q+L FWILNDIVWRKSNPMPNF
Sbjct: 66  YDKFTREWLKAARRVLKDDGAIWVIGSYHNIFRVGVAVQDLGFWILNDIVWRKSNPMPNF 125

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWAS S  AK YTFNYDALK AN++VQMRSDW IP+C+G ER++  DG
Sbjct: 126 KGTRFANAHETLIWASKSQNAKRYTFNYDALKMANDEVQMRSDWTIPLCTGEERIKGADG 185

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPEALL R+++S+TKPGD+ILDPFFG GT+GA AK+L R FIGIE + +Y++ 
Sbjct: 186 QKAHPTQKPEALLYRVILSTTKPGDVILDPFFGVGTTGAAAKRLGRKFIGIEREAEYLEH 245

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  RIA V P+   +L V+  KR EPRV F  +VE GL+ PG  L  ++G   A V  DG
Sbjct: 246 AKARIAKVVPIAPEDLDVMGSKRAEPRVPFGTIVEAGLLSPGDTLYCSKGTHVAKVRPDG 305

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVR 369
           ++  G   GSIH++GA V  +  CNGW +W+F+    L  I+ LR  VR
Sbjct: 306 SITVGDLSGSIHKIGALVQSAPACNGWTYWHFKTDAGLAPIDVLRAQVR 354


>gi|255262501|ref|ZP_05341843.1| modification methylase CcrMI [Thalassiobium sp. R2A62]
 gi|255104836|gb|EET47510.1| modification methylase CcrMI [Thalassiobium sp. R2A62]
          Length = 369

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 211/350 (60%), Positives = 266/350 (76%), Gaps = 1/350 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I+ G+ I  +  LPA SVDLIFADPPYNLQL G L+RPD+S VDAV + WD+FSSF+ YD
Sbjct: 18  ILDGDCIERMNSLPAGSVDLIFADPPYNLQLRGDLHRPDNSKVDAVDNDWDQFSSFDVYD 77

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FT+AWL A RR+LKPNG +W IGSYHN+FR+G  LQN  FWILND+VWRKSNPMPNFRG
Sbjct: 78  KFTKAWLKAARRLLKPNGAIWCIGSYHNVFRMGAELQNQGFWILNDVVWRKSNPMPNFRG 137

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +RF NAHETLIWAS S  AK YTFNY+ALKA NE +QMRSDW++PIC+G ERL++ +G+K
Sbjct: 138 KRFTNAHETLIWASKSEGAK-YTFNYEALKALNEGIQMRSDWVLPICTGHERLKDDNGDK 196

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE+LL R+L+++T PGD++LDPFFG+GT+GAVAK L R FIGIE +  Y ++A 
Sbjct: 197 AHPTQKPESLLHRVLLATTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREVAYREVAE 256

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KRIA ++      L V   KR EPRV F  LVERG+++PG+ L +      A V ADGTL
Sbjct: 257 KRIAKIRKFDKEALQVSQSKRAEPRVPFGQLVERGMLRPGEELYSINKRHKAKVRADGTL 316

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           I     GSIH+VGA + G+ +CNGW +W+++K G+   I+ LR  +R E+
Sbjct: 317 IGDDVKGSIHQVGAHLEGAPSCNGWTYWHYKKEGKKVPIDLLRQQIRAEM 366


>gi|254485663|ref|ZP_05098868.1| modification methylase SmeIP [Roseobacter sp. GAI101]
 gi|214042532|gb|EEB83170.1| modification methylase SmeIP [Roseobacter sp. GAI101]
          Length = 366

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 212/352 (60%), Positives = 261/352 (74%), Gaps = 1/352 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I+ G+ I  +  +P  SVDLIFADPPYNLQL G L+RPD+S VDAV D+WD+F+SF  YD
Sbjct: 16  ILAGDCIEAMNAMPEGSVDLIFADPPYNLQLKGDLHRPDNSKVDAVDDAWDQFASFAVYD 75

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FTR WL A RR+LKPNG +WVIGSYHNIFR+G  LQ+  FWILND+VWRKSNPMPNFRG
Sbjct: 76  KFTREWLKAARRLLKPNGAIWVIGSYHNIFRVGAALQDQGFWILNDVVWRKSNPMPNFRG 135

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +RF NAHET+IWA     +K YTFNY+ALKA NE +QMRSDW++PIC+G ERL++  G+K
Sbjct: 136 KRFTNAHETMIWAGKDENSK-YTFNYEALKALNEGIQMRSDWVLPICTGHERLKDDAGDK 194

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE+LL RILV ST PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  +A 
Sbjct: 195 AHPTQKPESLLHRILVGSTNPGDVVLDPFFGTGTTGAVAKMLGRDFIGIEREEAYRKVAE 254

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KRI SV+      L   T KR EPRV F  LVERG+++PG+ L +  G  SA V ADGTL
Sbjct: 255 KRIKSVRKFDKEALQTTTSKRAEPRVPFGQLVERGMLRPGEELYSLNGRYSAKVRADGTL 314

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           I     GSIH+VGA    + +CNGW +W ++K G+   I+ LR  +R E+ N
Sbjct: 315 IGNEVKGSIHQVGAAYEKAPSCNGWTYWCYKKDGKRVPIDILRQQIRAEMAN 366


>gi|119384833|ref|YP_915889.1| DNA methylase N-4/N-6 domain-containing protein [Paracoccus
           denitrificans PD1222]
 gi|119374600|gb|ABL70193.1| DNA methylase N-4/N-6 domain protein [Paracoccus denitrificans
           PD1222]
          Length = 376

 Score =  454 bits (1169), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 209/352 (59%), Positives = 264/352 (75%), Gaps = 1/352 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I+ G+ I ++  LP  SVDLIFADPPYNLQL G+L+RPD+S VDAV D WD+FS F A
Sbjct: 18  NQILAGDCIEIMNALPEASVDLIFADPPYNLQLKGELHRPDNSRVDAVDDHWDQFSGFAA 77

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL A RR+LKP+G +WVIGSYHNIFR+G  LQN  FWILND+VWRK+NPMPNF
Sbjct: 78  YDRFTRDWLAAARRILKPDGAIWVIGSYHNIFRVGAELQNQGFWILNDVVWRKANPMPNF 137

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+R  NAHET+IWAS S  AK YTFNY+ALK+ NE VQMRSDW++PIC+G ERL++  G
Sbjct: 138 RGKRLTNAHETMIWASKSEGAK-YTFNYEALKSLNEGVQMRSDWVLPICTGGERLKDAGG 196

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K HPTQKPEALL RILV ST PGD++LDPFFG+GT+GAVAK L R FIGIE +  Y ++
Sbjct: 197 AKAHPTQKPEALLHRILVGSTNPGDVVLDPFFGTGTTGAVAKMLGRDFIGIEREAAYREV 256

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KRIA ++   +  +  +  KR EPRV F  +VERG+++PG+ L +      A V ADG
Sbjct: 257 AEKRIARIRKFDSEAIATIKPKRAEPRVPFGQVVERGMLRPGEELYSLNNRHKAKVRADG 316

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           +LI     GSIH+VGA + G+ +CNGW +W+F + G +  I+ LR  +R E+
Sbjct: 317 SLIGNDVKGSIHQVGAALEGAPSCNGWTYWHFRREGRMVPIDILRQQIRAEM 368


>gi|89052883|ref|YP_508334.1| DNA methylase N-4/N-6 [Jannaschia sp. CCS1]
 gi|88862432|gb|ABD53309.1| DNA methylase N-4/N-6 [Jannaschia sp. CCS1]
          Length = 367

 Score =  454 bits (1169), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 210/350 (60%), Positives = 270/350 (77%), Gaps = 2/350 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I+ G+ I V+  LP  SVDLIFADPPYNLQL G L+RP++SLVDAV + WD+F SF+AYD
Sbjct: 18  ILAGDCIDVMNALPEASVDLIFADPPYNLQLKGDLHRPNNSLVDAVDNDWDQFDSFKAYD 77

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           AFT+AWL A +R+LKP G +WVIGSYHNIFR+G  LQ   +WILND+VWRKSNPMPNFRG
Sbjct: 78  AFTKAWLAAAKRLLKPGGAIWVIGSYHNIFRVGAELQTQGYWILNDVVWRKSNPMPNFRG 137

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +RF NAHET+IWAS    AK YTFNY+ALK  NE +QMRSDW++PIC+GSERL++  G+K
Sbjct: 138 KRFTNAHETMIWASKDEGAK-YTFNYEALKELNEGIQMRSDWVLPICNGSERLKDDKGDK 196

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE+LL R+LV ST PGD++LDPFFG+GT+GAVAK L R +IGIE ++ Y  +A 
Sbjct: 197 AHPTQKPESLLHRVLVGSTNPGDVVLDPFFGTGTTGAVAKALGRDYIGIEREEAYRVVAE 256

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KR++ V+      + V T KR EPRV F  LVERG+++PG++L + +G   A V ADGTL
Sbjct: 257 KRLSRVRKFDKTSIAVTTPKRAEPRVPFGQLVERGMLRPGEMLFSPRGQ-QAKVRADGTL 315

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           I+    GSIH+VGA++ G+ +CNGW +W F++ G+  SI+ LR  +R E+
Sbjct: 316 IADDVKGSIHKVGAELEGAPSCNGWTYWNFKRDGKNVSIDVLRQQIRAEM 365


>gi|149912479|ref|ZP_01901013.1| Site-specific DNA-methyltransferase [Roseobacter sp. AzwK-3b]
 gi|149812885|gb|EDM72711.1| Site-specific DNA-methyltransferase [Roseobacter sp. AzwK-3b]
          Length = 371

 Score =  454 bits (1168), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 210/352 (59%), Positives = 264/352 (75%), Gaps = 1/352 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I+ G+ I V+  LP  S+DLIFADPPYNLQL G L+RPD+S VDAV D+WD+F+SFE YD
Sbjct: 18  ILDGDCIEVMNSLPEGSIDLIFADPPYNLQLRGDLHRPDNSAVDAVDDAWDQFASFEVYD 77

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FT  WL A RR+LKPNG +WVIGSYHNIFR+G  LQN  FWILND+VWRKSNPMPNFRG
Sbjct: 78  CFTNDWLNAARRLLKPNGAIWVIGSYHNIFRVGAALQNAGFWILNDVVWRKSNPMPNFRG 137

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +R  NAHET+IWAS    AK YTFNY+ALK+ N+ VQMRSDW++PIC+G ERL+++ G+K
Sbjct: 138 KRLTNAHETMIWASKQEGAK-YTFNYEALKSLNDGVQMRSDWVLPICTGHERLKDEHGDK 196

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE+LL R+LV ST PGD++LDPFFG+GT+GAVAK L R +IGIE +  Y  +A 
Sbjct: 197 AHPTQKPESLLHRVLVGSTNPGDVVLDPFFGTGTTGAVAKMLGRDYIGIEREAAYRKVAE 256

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KR+A ++      L V T KR EPRV F  LVERG+++PG+ L +  G   A V ADGTL
Sbjct: 257 KRLAGIRKFDRAALEVSTSKRAEPRVPFGQLVERGMLRPGEELLSMNGRHKAKVRADGTL 316

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           I     GSIH+VGA + G+ +CNGW +W F++ G+   I+ LR  +R E+ +
Sbjct: 317 IGDDVKGSIHQVGAALEGAPSCNGWTYWCFKRDGKTVPIDILRQQIRAEMAD 368


>gi|87199857|ref|YP_497114.1| DNA methylase N-4/N-6 [Novosphingobium aromaticivorans DSM 12444]
 gi|87135538|gb|ABD26280.1| DNA methylase N-4/N-6 [Novosphingobium aromaticivorans DSM 12444]
          Length = 380

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 209/347 (60%), Positives = 270/347 (77%), Gaps = 2/347 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I++G+ I+ + KLP  S+D+IFADPPYNLQL G L RPD S VDAVT+ WDKFSSF A
Sbjct: 29  NQILRGDCIAEMRKLPDASIDMIFADPPYNLQLGGDLARPDGSHVDAVTNDWDKFSSFAA 88

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL+  RR+LKP+G++WVIGSYHNIFR+G +LQ+L FWILNDI+WRK+NPMPNF
Sbjct: 89  YDKFTREWLVEARRLLKPDGSIWVIGSYHNIFRVGALLQDLGFWILNDIIWRKANPMPNF 148

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWAS S K+K YTFNY A+K  N+++QMRSDW++PICSG ERLR ++G
Sbjct: 149 KGTRFTNAHETLIWASKSEKSK-YTFNYRAMKTLNDELQMRSDWVLPICSGPERLR-RNG 206

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K HPTQKPEALL R+++++T  GD++LDPFFG+GT+GAVAK+L R++IG E + DYI++
Sbjct: 207 TKAHPTQKPEALLYRVMLATTNKGDVVLDPFFGTGTTGAVAKRLGRNWIGCEREDDYIEV 266

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A +RI    PL    LT +  KR+ P+VAF  LVE G + PG  LT  +G  +A V ADG
Sbjct: 267 ANERIELALPLDESALTTMQSKRSAPKVAFGALVESGYLAPGTRLTAKKGRFNAVVRADG 326

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRIL 367
           +L S  E+GSIH +GAK+ G+ +CNGW FW+ E  GE+  I+ LR L
Sbjct: 327 SLQSEAEIGSIHGLGAKLQGAPSCNGWTFWHVEHEGEVKPIDALRQL 373


>gi|89070018|ref|ZP_01157349.1| modification methylase [Oceanicola granulosus HTCC2516]
 gi|89044355|gb|EAR50493.1| modification methylase [Oceanicola granulosus HTCC2516]
          Length = 368

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 206/350 (58%), Positives = 265/350 (75%), Gaps = 1/350 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I+ G+ I  +  LP  S+DLIFADPPYNLQL G L+RPD+S VDAV D+WD+F++FE YD
Sbjct: 17  ILSGDCIEAMRTLPDASIDLIFADPPYNLQLKGDLHRPDNSRVDAVDDAWDRFATFETYD 76

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           AFTRAWL   RR+LKP G +WVIGSYHN+FR+G  LQN  +WILND+VWRKSNPMPNFRG
Sbjct: 77  AFTRAWLAEARRLLKPTGAIWVIGSYHNVFRLGAELQNQGYWILNDVVWRKSNPMPNFRG 136

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +R  NAHETLIWAS S  +K YTFNY+ALKA NE  QMRSDW++PIC+G ERL++ +G+K
Sbjct: 137 KRLTNAHETLIWASKSEGSK-YTFNYEALKALNEGTQMRSDWVLPICTGHERLKDANGDK 195

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE+LL R+L+ +T PGD++LDPFFG+GT+GAVAK L R +IGIE +  Y ++A 
Sbjct: 196 AHPTQKPESLLHRVLLGTTNPGDVVLDPFFGTGTTGAVAKMLGRDWIGIEREAAYREVAE 255

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
            R+  ++      L V T KR EPRV F  LVERG+++PG++LT+  G  SA V ADGTL
Sbjct: 256 ARLKRIRKYDRDALAVTTSKRAEPRVPFGQLVERGMLRPGEVLTSLNGQKSAKVRADGTL 315

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           ++    GSIH+VGA + G+ +CNGW +W F + G+   I+ LR  +R E+
Sbjct: 316 VADDVKGSIHQVGAHLEGAPSCNGWTYWCFRRDGKTVPIDLLRQQIRAEM 365


>gi|295687797|ref|YP_003591490.1| DNA methylase N-4/N-6 domain-containing protein [Caulobacter segnis
           ATCC 21756]
 gi|295429700|gb|ADG08872.1| DNA methylase N-4/N-6 domain protein [Caulobacter segnis ATCC
           21756]
          Length = 358

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 214/349 (61%), Positives = 258/349 (73%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + II G+ I  +  LP KSVDLIFADPPYNLQL G L RPD+S VDAV D WD+F SF A
Sbjct: 6   ETIILGDCIEQMNALPEKSVDLIFADPPYNLQLGGDLLRPDNSKVDAVDDHWDQFESFAA 65

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL A RRVLK +G +WVIGSYHNIFR+G  +Q+L FWILNDIVWRKSNPMPNF
Sbjct: 66  YDKFTREWLKAARRVLKDDGAIWVIGSYHNIFRVGVAVQDLGFWILNDIVWRKSNPMPNF 125

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWAS S  AK YTFNYDALK AN++VQMRSDW IP+C+G ER++  DG
Sbjct: 126 KGTRFANAHETLIWASKSQNAKRYTFNYDALKMANDEVQMRSDWTIPLCTGEERIKGADG 185

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPEALL R+++S+TKPGD+ILDPFFG GT+GA AK+L R FIGIE + +Y+  
Sbjct: 186 QKAHPTQKPEALLYRVILSTTKPGDVILDPFFGVGTTGAAAKRLGRKFIGIEREAEYLGH 245

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A +RIA V P+   +L V+  KR EPRV F  +VE GL+ PG  L  A+G   A V  DG
Sbjct: 246 AKERIAKVVPINPHDLEVMGSKRAEPRVPFGTIVEAGLLSPGDTLYCAKGERVAKVRPDG 305

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVR 369
           ++  G   GSIH++GA V  +  CNGW +W+F+    L  I+ LR  VR
Sbjct: 306 SITVGDLSGSIHKIGALVQSAPACNGWTYWHFKTDAGLAPIDVLRAQVR 354


>gi|254293434|ref|YP_003059457.1| DNA methylase N-4/N-6 domain protein [Hirschia baltica ATCC 49814]
 gi|254041965|gb|ACT58760.1| DNA methylase N-4/N-6 domain protein [Hirschia baltica ATCC 49814]
          Length = 363

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 208/353 (58%), Positives = 267/353 (75%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           KD I+ G+ I ++  LP KSVDL+FADPPYNLQL G L RPD+S VDAV + WD+F+SFE
Sbjct: 8   KDHILIGDCIELMNSLPEKSVDLVFADPPYNLQLGGDLVRPDNSKVDAVDNEWDQFASFE 67

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YD FT+ WL A RRVLK +G +WVIGSYHNIFR+G+ LQ+L FWILND++W KSNPMPN
Sbjct: 68  TYDNFTKDWLTAARRVLKDDGAIWVIGSYHNIFRVGSQLQDLGFWILNDVIWNKSNPMPN 127

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           F+G RF NAHETLIWA+ S + K YTFNYDALK AN+DVQMRSDW IPICSG ERL+N +
Sbjct: 128 FKGTRFTNAHETLIWATKSKEQKKYTFNYDALKTANDDVQMRSDWTIPICSGGERLKNDE 187

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKPEALL R+++++TK GD +LDPFFG+GT+GAVAK L R FIG+E ++DY  
Sbjct: 188 GKKAHPTQKPEALLHRVIMATTKQGDTVLDPFFGTGTTGAVAKMLGRHFIGLEREEDYAA 247

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A  RI +V+ + +++L V   KR+ PRV F  L+ERG ++PG  L   +    A V AD
Sbjct: 248 VAQARIDNVRKVDDVDLQVTQPKRSAPRVPFGALIERGFLRPGDRLYCPKQQHIARVRAD 307

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           G+L +G + GSIHR+GA+V  + +CNGW FW+++    L  I+ LR   R E+
Sbjct: 308 GSLANGDDTGSIHRLGAQVQNAPSCNGWTFWHYKSDQGLAPIDLLRRKFRTEM 360


>gi|323135965|ref|ZP_08071048.1| DNA methylase N-4/N-6 domain protein [Methylocystis sp. ATCC 49242]
 gi|322399056|gb|EFY01575.1| DNA methylase N-4/N-6 domain protein [Methylocystis sp. ATCC 49242]
          Length = 392

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 207/354 (58%), Positives = 264/354 (74%), Gaps = 1/354 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           ++ I++G+ + ++  LP +SVDL+FADPPYNLQL  +L RPD SLVDAV D WDKF+ F 
Sbjct: 34  RNAILQGDCVELMRGLPHESVDLVFADPPYNLQLASKLTRPDQSLVDAVDDDWDKFADFA 93

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YDAFTR WL A RRV+KP+ T++VIGSYHNIFR+G ++Q+L FWILNDIVWRK+NPMPN
Sbjct: 94  TYDAFTRDWLSAARRVMKPSATIFVIGSYHNIFRVGAIMQDLGFWILNDIVWRKNNPMPN 153

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRGRRF NAHET+IWA+    AK YTFNY+ALKA NED QMRSDWL+PIC+G+ERL++ +
Sbjct: 154 FRGRRFTNAHETMIWAARDASAKSYTFNYEALKAGNEDCQMRSDWLLPICTGAERLKDAE 213

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K HPTQKPE LL+R+++S++  GD++LDPFFGSGT+GAVAK+LRR F+G+E    Y  
Sbjct: 214 GRKAHPTQKPETLLARVILSASNAGDLVLDPFFGSGTTGAVAKRLRRDFLGLERDPVYAK 273

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A  RIA ++PL    ++V   KR EPR+AF  LVE GLI PG  LT+ +    A V AD
Sbjct: 274 AANARIAEIEPLPEHAVSVAPSKRAEPRIAFASLVESGLIAPGARLTDLKKRHVAMVRAD 333

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKL-GELHSINTLRILVRKEL 372
           GTL     +GSIH+ GA   G   CNGW FW++EK  G +  I+ LR  +R  +
Sbjct: 334 GTLSLSGFIGSIHKTGALAQGLPACNGWTFWHYEKADGLVAPIDELRAQMRDHM 387


>gi|149202923|ref|ZP_01879894.1| modification methylase [Roseovarius sp. TM1035]
 gi|149143469|gb|EDM31505.1| modification methylase [Roseovarius sp. TM1035]
          Length = 370

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 206/350 (58%), Positives = 271/350 (77%), Gaps = 2/350 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G+ I V+  LP  SVDLIFADPPYNLQL G L+RPD+S VDAV D+WD+F+SF AYD
Sbjct: 18  IIAGDCIEVMNSLPEASVDLIFADPPYNLQLKGDLHRPDNSQVDAVDDAWDQFASFAAYD 77

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FT+ WL A RR+LKP+G +WVIGSYHNIFR+G  LQ+  +WILND++WRKSNPMPNFRG
Sbjct: 78  KFTQDWLKAARRLLKPHGAIWVIGSYHNIFRVGAALQDAGYWILNDVIWRKSNPMPNFRG 137

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +R  NAHET+IWAS S  AK YTFNY+ALK+ N+ VQMRSDW++P+C+G ERL++ +G+K
Sbjct: 138 KRLTNAHETMIWASKSEGAK-YTFNYEALKSLNDGVQMRSDWVLPLCTGHERLKDDNGDK 196

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE+LL R+LV ST PGD++LDPFFG+GT+GAVAK L R +IGIE +  Y  +A 
Sbjct: 197 AHPTQKPESLLHRVLVGSTNPGDVVLDPFFGTGTTGAVAKMLGRDYIGIEREAAYRSVAE 256

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KR+A+++      L V T KR EPRV F  L+ERG+++PG++LT+  G  +A V ADGTL
Sbjct: 257 KRLANIRKFDRDALQVSTSKRAEPRVPFGQLIERGMLRPGEVLTSINGK-AAKVRADGTL 315

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           ++    GSIH++GA + G+ +CNGW +W F++ G++  I+ LR  +R E+
Sbjct: 316 VADGINGSIHQIGAHLEGAPSCNGWTYWCFKREGKVVPIDVLRQQIRSEM 365


>gi|126738667|ref|ZP_01754372.1| modification methylase [Roseobacter sp. SK209-2-6]
 gi|126720466|gb|EBA17172.1| modification methylase [Roseobacter sp. SK209-2-6]
          Length = 368

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 212/352 (60%), Positives = 262/352 (74%), Gaps = 1/352 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I+ G+ I V+  LP  SVDLIFADPPYNLQL  QL+RPD+S VDAV D WD+FSSF AYD
Sbjct: 18  ILDGDCIEVMSGLPDNSVDLIFADPPYNLQLKNQLHRPDNSKVDAVDDHWDQFSSFAAYD 77

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FT  WL   RR+LKPNG +WVIGSYHNIFR+GT +Q+  FWILND+VWRKSNPMPNFRG
Sbjct: 78  DFTSRWLHQARRILKPNGAIWVIGSYHNIFRVGTAMQDEGFWILNDVVWRKSNPMPNFRG 137

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +R+ NAHET+IWAS S   K YTFNY+ALKA NE +QMRSDW++PIC+G ERL++++G+K
Sbjct: 138 KRYTNAHETMIWASKSEGGK-YTFNYEALKALNEGIQMRSDWVLPICTGHERLKDENGDK 196

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE+LL RILV ST PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  +A 
Sbjct: 197 AHPTQKPESLLHRILVGSTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEQEESYRKVAA 256

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
            RI +V+      L V T KR  PRV F  LVERG+++PG+ L +      A V ADGTL
Sbjct: 257 ARIKAVRKFDREALQVSTSKRAAPRVPFGQLVERGMLRPGEELYSMNRRHKAKVRADGTL 316

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           I     GSIH+VGA +  + +CNGW +W F+K G+   I+ LR  +R E+ N
Sbjct: 317 IGDNCKGSIHQVGAHLENAPSCNGWTYWCFKKDGKTVPIDVLRQQIRAEMQN 368


>gi|329888142|ref|ZP_08266740.1| modification methylase CcrMI [Brevundimonas diminuta ATCC 11568]
 gi|328846698|gb|EGF96260.1| modification methylase CcrMI [Brevundimonas diminuta ATCC 11568]
          Length = 356

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 209/349 (59%), Positives = 261/349 (74%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I++G+ I VL+ LP KSVD++FADPPYNLQL G L RPD+S VDAV D WDKF SF A
Sbjct: 4   DVILRGDCIEVLKGLPDKSVDMVFADPPYNLQLGGDLLRPDNSKVDAVDDDWDKFDSFAA 63

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YDAFTRAWL  CRRVLK  G+LWVIGSYHNIFR+G  +Q+L FW+LNDI+WRKSNPMPNF
Sbjct: 64  YDAFTRAWLGECRRVLKDEGSLWVIGSYHNIFRLGAAMQDLGFWVLNDIIWRKSNPMPNF 123

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWA+ S + K YTFNYDALKA NED QMRSDW + +C+G ERL++++G
Sbjct: 124 KGTRFTNAHETLIWAAKSREQKRYTFNYDALKAFNEDTQMRSDWTLALCTGGERLKDENG 183

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPEALL R+L+S+++ GD++LDPFFG+GT+GA AK+L R FIGIE  + Y  +
Sbjct: 184 DKAHPTQKPEALLHRVLLSASRVGDVVLDPFFGTGTTGAAAKRLGRRFIGIERDETYAKL 243

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KRI +V P    +L V   K+ EP+V F  LVE GL+ PG  L   +G   A V ADG
Sbjct: 244 AEKRIKAVIPAAPEDLVVTGSKKAEPKVPFGALVEAGLLAPGDKLYCPKGEREARVRADG 303

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVR 369
           +L+SG   GSIH++GA +  +  CNGW +W F+    L  I+ LR  +R
Sbjct: 304 SLVSGALTGSIHKLGALLENAPACNGWTYWRFKTDTGLRPIDALRAEIR 352


>gi|182677743|ref|YP_001831889.1| DNA methylase N-4/N-6 domain-containing protein [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182633626|gb|ACB94400.1| DNA methylase N-4/N-6 domain protein [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 395

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/350 (61%), Positives = 268/350 (76%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+I+ G+ +  L +LPA+SVDL+FADPPYNLQL G++ RPD S VDAV D+WDKF SF  
Sbjct: 40  DQILLGDCVEKLNRLPAESVDLVFADPPYNLQLEGKILRPDQSQVDAVDDAWDKFDSFAD 99

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FT  WL A RRV+K + TL+VIGSYHNIFR+GT+LQ+  FWILNDI+WRKSNPMPNF
Sbjct: 100 YDRFTHEWLAAVRRVMKRHATLFVIGSYHNIFRVGTILQDQGFWILNDIIWRKSNPMPNF 159

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RGRRF NAHET+IWA+ S   K YTF+YDALKA NED Q+RSDWL+PICSG ERL+N+ G
Sbjct: 160 RGRRFTNAHETMIWAAKSADVKNYTFHYDALKAGNEDHQVRSDWLLPICSGGERLKNEAG 219

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K HPTQKPE LLSRIL+++T PGD++LDPFFG+GT+GAVAKKL RSFIGIE +  Y   
Sbjct: 220 RKTHPTQKPENLLSRILLATTNPGDVVLDPFFGTGTTGAVAKKLGRSFIGIEREAGYAAA 279

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  RIA++ PL +  +     KRTEPR+ F  L+E GL+  G+ LT+ +G   A V ADG
Sbjct: 280 AKARIAAIDPLPSEAIASFPNKRTEPRIPFMTLIESGLLAAGETLTDEKGRHEAVVRADG 339

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRK 370
           TL  G  +GSIH++GA V G   CNGW FW+F++ G+ H ++ LRI +R+
Sbjct: 340 TLAVGPIIGSIHKIGALVQGLPACNGWTFWHFQRDGQKHPLDRLRIQLRE 389


>gi|393012|gb|AAA18913.1| adenine methyltransferase [Caulobacter crescentus CB15]
          Length = 358

 Score =  451 bits (1160), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 212/349 (60%), Positives = 257/349 (73%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + II G+ I  +  LP KSVDLIFADPPYNLQL G L RPD+S VDAV D WD+F SF A
Sbjct: 6   ETIIHGDCIEQMNALPEKSVDLIFADPPYNLQLGGDLLRPDNSKVDAVDDHWDQFESFAA 65

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL A RRVLK +G +WVIGSYHNIFR+G  +Q+L FWILNDIVWRKSNPMPNF
Sbjct: 66  YDKFTREWLKAARRVLKDDGAIWVIGSYHNIFRVGVAVQDLGFWILNDIVWRKSNPMPNF 125

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWAS S  AK YTFNYDALK AN++VQMRSDW IP+C+G ER++  DG
Sbjct: 126 KGTRFANAHETLIWASKSQNAKRYTFNYDALKMANDEVQMRSDWTIPLCTGEERIKGADG 185

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPEALL R+++S+TKPGD+ILDPFFG GT+GA AK+L R FIGIE + + ++ 
Sbjct: 186 QKAHPTQKPEALLYRVILSTTKPGDVILDPFFGVGTTGAAAKRLGRKFIGIEREAEDLEH 245

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  RIA V P+   +L V+  KR EPRV F  +VE GL+ PG  L  ++G   A V  DG
Sbjct: 246 AKARIAKVVPIAPEDLDVMGSKRAEPRVPFGTIVEAGLLSPGDTLYCSKGTHVAKVRPDG 305

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVR 369
           ++  G   GSIH++GA V  +  CNGW +W+F+    L  I+ LR  VR
Sbjct: 306 SITVGDLSGSIHKIGALVQSAPACNGWTYWHFKTDAGLAPIDVLRAQVR 354


>gi|146276124|ref|YP_001166283.1| DNA methylase N-4/N-6 domain-containing protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145554365|gb|ABP68978.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 372

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 208/352 (59%), Positives = 266/352 (75%), Gaps = 1/352 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I+ G+ I V+  LP  SVDLIFADPPYNLQL G L+RPD+S VDAV D WD+FSSF +
Sbjct: 16  NQILAGDCIEVMRSLPECSVDLIFADPPYNLQLRGDLHRPDNSRVDAVDDHWDQFSSFAS 75

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL A RR+LKPNG +WVIGSYHNIFR+G  LQ+  FWILND+VWRKSNPMPNF
Sbjct: 76  YDQFTREWLAAARRLLKPNGAIWVIGSYHNIFRVGAALQDQGFWILNDVVWRKSNPMPNF 135

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G+R  NAHETLIWAS    +K YTFNY+ALKA NE +QMRSDW+IPIC+G ERL+++ G
Sbjct: 136 KGKRLTNAHETLIWASKQEASK-YTFNYEALKALNEGIQMRSDWVIPICTGHERLKDEHG 194

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPEALL R++V++T PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  +
Sbjct: 195 DKAHPTQKPEALLHRVMVATTNPGDVVLDPFFGTGTTGAVAKMLGRDFIGIEREEGYRKV 254

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A +R++ V+      L V   KR EPRV F  LVERG+++PG+ L +      A V ADG
Sbjct: 255 AAERLSRVRRFDASALEVSGSKRAEPRVPFGQLVERGMLRPGEELYSMNNRHKAKVRADG 314

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           TLI     GSIH+VGA + G+ +CNGW +W +++ G++  I+ LR  +R E+
Sbjct: 315 TLIGNDVKGSIHQVGAALEGAPSCNGWTYWCYKREGKMIPIDILRQQIRAEM 366


>gi|294675758|ref|YP_003576373.1| adenine-specific DNA-methyltransferase [Rhodobacter capsulatus SB
           1003]
 gi|294474578|gb|ADE83966.1| site-specific DNA-methyltransferase (adenine-specific) [Rhodobacter
           capsulatus SB 1003]
          Length = 367

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 207/352 (58%), Positives = 266/352 (75%), Gaps = 1/352 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I+ G+ I V+ +LP  SVDLIFADPPYNLQL G L+RPD+S VDAV D+WD+F SF+ 
Sbjct: 16  NEILAGDCIDVMNRLPEASVDLIFADPPYNLQLRGDLHRPDNSKVDAVDDAWDQFGSFDH 75

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL A +R+LKPNG +WVIGSYHN+FR+G  LQN  FWILND+VWRKSNPMPNF
Sbjct: 76  YDTFTRDWLAAAKRILKPNGAIWVIGSYHNVFRLGAELQNQGFWILNDVVWRKSNPMPNF 135

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+R  NAHETLIWAS S  AK YTFNY+ALKA NE +QMRSDW++PIC+G+ERL++  G
Sbjct: 136 RGKRLTNAHETLIWASKSEGAK-YTFNYEALKALNEGIQMRSDWVLPICTGNERLKDDAG 194

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPE+LL RI++ +T  GD++LDPFFG+GT+GAVAK L R FIGIE ++ Y + 
Sbjct: 195 DKAHPTQKPESLLHRIILGTTNAGDVVLDPFFGTGTTGAVAKMLGRDFIGIEREEAYREA 254

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KRI  V+      L +   KR EPRV F  LVERG+++PG+ L +      A V ADG
Sbjct: 255 ARKRIDKVRKFDREALEITGSKRAEPRVPFGQLVERGMLRPGEELYSIGNRFKAKVRADG 314

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           TL+     GSIH+VGA + G+ +CNGW +W+F++ G++  I+ LR  +R E+
Sbjct: 315 TLVGNDVKGSIHQVGAHLEGAPSCNGWTYWHFKRDGKMVPIDLLRQQIRAEM 366


>gi|315498149|ref|YP_004086953.1| DNA methylase n-4/n-6 domain protein [Asticcacaulis excentricus CB
           48]
 gi|315416161|gb|ADU12802.1| DNA methylase N-4/N-6 domain protein [Asticcacaulis excentricus CB
           48]
          Length = 371

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 202/351 (57%), Positives = 260/351 (74%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I  G  + +L+ LP KSVDL+FADPPYNLQL G L+RPD+S VDAV D WD+F+SFEA
Sbjct: 19  DTIHVGECVDILKSLPDKSVDLVFADPPYNLQLGGDLHRPDNSKVDAVDDEWDQFASFEA 78

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR W+  C+RVLK +G +WVIGSYHN+FR+G  LQ+L FW++ND++WRK+NPMPNF
Sbjct: 79  YDRFTREWMRECQRVLKDDGAIWVIGSYHNVFRLGVALQDLGFWVMNDVIWRKANPMPNF 138

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWA+ +   K YTFNYDALKA NED QMRSDW IP+C+G ERL+++DG
Sbjct: 139 KGTRFTNAHETLIWATKAKGQKRYTFNYDALKAFNEDTQMRSDWAIPLCTGEERLKDEDG 198

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K+HPTQKPE+LL R+L++ +KPG ++LDPFFG+GT+GA AK+L R FIGIE  + Y   
Sbjct: 199 NKVHPTQKPESLLYRVLLACSKPGHVVLDPFFGTGTTGAAAKRLGRHFIGIERDETYAKH 258

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A +RIA VQ     +L  +  K+ EPRV F  LVE GL+QPG  L   +G  +A V ADG
Sbjct: 259 ARERIARVQRANESDLATMGSKKAEPRVPFGALVEAGLLQPGDTLYCPKGQRTARVRADG 318

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           +L+ G   GSIH+VGA +  + +CNGW FW F+       I+ LR  +R++
Sbjct: 319 SLVHGELTGSIHKVGAMLEQAPSCNGWTFWRFKTDAGFKPIDDLRARIRQQ 369


>gi|77462007|ref|YP_351511.1| site-specific DNA-methyltransferase [Rhodobacter sphaeroides 2.4.1]
 gi|126460897|ref|YP_001042011.1| DNA methylase N-4/N-6 domain-containing protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|221640958|ref|YP_002527220.1| DNA methylase N-4/N-6 domain-containing protein [Rhodobacter
           sphaeroides KD131]
 gi|332559934|ref|ZP_08414256.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sphaeroides WS8N]
 gi|77386425|gb|ABA77610.1| Site-specific DNA-methyltransferase [Rhodobacter sphaeroides 2.4.1]
 gi|126102561|gb|ABN75239.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|221161739|gb|ACM02719.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sphaeroides
           KD131]
 gi|332277646|gb|EGJ22961.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sphaeroides WS8N]
          Length = 372

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 209/352 (59%), Positives = 264/352 (75%), Gaps = 1/352 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I+ G+ I  +  LP  SVDLIFADPPYNLQL G L+RPD+S VDAV D WD+FSSF  
Sbjct: 16  NQILAGDCIETMRSLPECSVDLIFADPPYNLQLRGDLHRPDNSRVDAVDDHWDQFSSFSV 75

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL A RR+LKPNG +WVIGSYHNIFR+G  LQ+  FWILND+VWRKSNPMPNF
Sbjct: 76  YDQFTREWLAAARRLLKPNGAIWVIGSYHNIFRVGAALQDQGFWILNDVVWRKSNPMPNF 135

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G+R  NAHETLIWAS    +K YTFNY+ALKA NE VQMRSDW+IPIC+G ERL+++ G
Sbjct: 136 KGKRLTNAHETLIWASKQEASK-YTFNYEALKALNEGVQMRSDWVIPICTGHERLKDEQG 194

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPEALL R++V++T PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  I
Sbjct: 195 DKAHPTQKPEALLHRVMVATTNPGDVVLDPFFGTGTTGAVAKMLGRDFIGIEREESYRRI 254

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A +R++ V+      L V   KR EPRV F  LVERG+++PG+ L +      A V ADG
Sbjct: 255 AAERLSRVRRYDASALEVSGSKRAEPRVPFGQLVERGMLRPGEELYSMNNRHKAKVRADG 314

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           TLI     GSIH+VGA + G+ +CNGW +W +++ G++  I+ LR  +R E+
Sbjct: 315 TLIGNDVKGSIHQVGAALEGAPSCNGWTYWCYKREGKMIPIDILRQQIRAEM 366


>gi|329114180|ref|ZP_08242942.1| Modification methylase SmeI [Acetobacter pomorum DM001]
 gi|326696256|gb|EGE47935.1| Modification methylase SmeI [Acetobacter pomorum DM001]
          Length = 367

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 201/345 (58%), Positives = 261/345 (75%), Gaps = 1/345 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+I++G  +  +  LP+ SVD +FADPPYNLQL G+L RPD +LVD V D WDKFS  E 
Sbjct: 14  DQILRGECVETMRSLPSGSVDCVFADPPYNLQLRGELRRPDDTLVDGVDDDWDKFSDLEE 73

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTRAWL   RRVL  +GT+WVIGSYHNI+RIG +LQ+L FWILNDIVWRKSNPMPNF
Sbjct: 74  YDRFTRAWLAEARRVLHKDGTIWVIGSYHNIYRIGAILQDLGFWILNDIVWRKSNPMPNF 133

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RGRRF NAHETLIWA+    ++ Y FNY A+KA N+DVQMRSDW +P+C+G+ERLRN+ G
Sbjct: 134 RGRRFTNAHETLIWAARGQDSR-YRFNYQAMKALNDDVQMRSDWYLPLCTGNERLRNEHG 192

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            KLHPTQKPE+LL R+L++ST   D+ILDPF G+GT+ A+A++LRR FIGIE   DY++ 
Sbjct: 193 LKLHPTQKPESLLHRVLLASTTVNDVILDPFSGTGTTAAMARRLRRHFIGIERHPDYVEA 252

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  R+A+  PL    +     KR  PR+ F  LVE+G+I  G ++ + +  + ATV  DG
Sbjct: 253 AMARVAAETPLEADAVQTTQDKREAPRIPFGSLVEQGVIAAGTVVCDKKRRVHATVSPDG 312

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLR 365
           TL++GT+ GSIH++GA+++ + +CNGW FWYFE+ GEL  ++ LR
Sbjct: 313 TLVNGTKRGSIHKLGAQLTNAPSCNGWTFWYFERAGELLQLDVLR 357


>gi|163796460|ref|ZP_02190420.1| DNA methylase N-4/N-6 [alpha proteobacterium BAL199]
 gi|159178310|gb|EDP62854.1| DNA methylase N-4/N-6 [alpha proteobacterium BAL199]
          Length = 370

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 204/348 (58%), Positives = 265/348 (76%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I+ G+ I  L  LP +SVDLIFADPPYNLQL G+L RP+++ VD V D+WD+F  FEAY
Sbjct: 11  RILTGDCIEELRSLPDRSVDLIFADPPYNLQLGGELLRPNNTRVDGVDDAWDRFGGFEAY 70

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F RAWL  CRRVLK  GTLWVIGSYHNIFR+G ++Q+L FW+LND++WRK+NPMPNFR
Sbjct: 71  DKFCRAWLGECRRVLKDTGTLWVIGSYHNIFRVGAIVQDLGFWMLNDVIWRKANPMPNFR 130

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G+RF NAHETLIWA+ S  ++ YTFNYDA+KA N+D QMRSDW +P+C+G+ERL+ +DG 
Sbjct: 131 GKRFTNAHETLIWAARSEDSRRYTFNYDAMKALNDDQQMRSDWFLPLCTGAERLKAEDGS 190

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HPTQKPE+LL+R+L+++++PGDI+LDPFFG+GT+GAVAK+L R +IGIE    Y  IA
Sbjct: 191 KAHPTQKPESLLARVLLAASRPGDIVLDPFFGTGTTGAVAKRLGRRWIGIERDPGYAAIA 250

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
           +KRIA V+ + +     L  +R +PRV F  LVE GLI+PG++L +++    A V ADG 
Sbjct: 251 SKRIAEVEAVDDPMALALANRREQPRVPFGRLVEEGLIRPGEVLFDSRRRWFAKVRADGH 310

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVR 369
           LIS +  GSIH VGA V G+  CNGW FW+ E+ G    I+  R  +R
Sbjct: 311 LISESHKGSIHSVGAAVQGAPACNGWTFWHAERKGMPLPIDVFRQQIR 358


>gi|254450082|ref|ZP_05063519.1| modification methylase [Octadecabacter antarcticus 238]
 gi|198264488|gb|EDY88758.1| modification methylase [Octadecabacter antarcticus 238]
          Length = 373

 Score =  448 bits (1153), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 207/350 (59%), Positives = 262/350 (74%), Gaps = 1/350 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G+ I V+  LP  SVDLIFADPPYNLQL G L+RPD+S VDAV + WD+F SF+ YD
Sbjct: 22  IIDGDCIEVMNSLPEGSVDLIFADPPYNLQLKGDLHRPDNSKVDAVDNDWDQFESFKVYD 81

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FT AWL A RR+LKP+G +WVIGSYHN+FR+GT LQN  FWILND+VWRKSNPMPNFRG
Sbjct: 82  DFTHAWLKAARRILKPDGAIWVIGSYHNVFRMGTELQNQGFWILNDVVWRKSNPMPNFRG 141

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +R  NAHETLIWAS + K+K  TFNY+ALKA NE +QMRSDW++PIC+G ERL+N  G+K
Sbjct: 142 KRLTNAHETLIWASKAEKSKP-TFNYEALKALNEGIQMRSDWVLPICTGHERLKNDQGDK 200

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE+LL R+L+ +T PGD++LDPFFG+GT+GAVAK L R +IGIE + +Y  +A 
Sbjct: 201 AHPTQKPESLLHRVLLGTTNPGDVVLDPFFGTGTTGAVAKMLGRDYIGIEREAEYRAVAE 260

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KR+A ++   +  L V   KR EPRV F  +VERG+++PG+ L +  G   A V ADGTL
Sbjct: 261 KRLAKIRKFDSEALEVTQSKRAEPRVPFGQVVERGMLRPGEELWSMNGRHKAKVRADGTL 320

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           I     GSIH+VGA    + +CNGW +W+F + G+   I+ LR  +R E+
Sbjct: 321 IGADAKGSIHQVGAACEKAPSCNGWTYWHFRRDGKTVPIDLLRQQIRSEM 370


>gi|260574051|ref|ZP_05842056.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sp. SW2]
 gi|259023517|gb|EEW26808.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sp. SW2]
          Length = 375

 Score =  448 bits (1153), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 206/352 (58%), Positives = 266/352 (75%), Gaps = 1/352 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I++G+ I+ +  LPA S+DLIFADPPYNLQL G L+RPD+SLVDAV D WD+FSSF A
Sbjct: 16  NQILEGDCIAAMNGLPAASIDLIFADPPYNLQLKGDLHRPDNSLVDAVDDHWDQFSSFAA 75

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FT  WL A RR+LKPNG +WVIGSYHNIFR+G  LQ+  FW+LND+VWRKSNPMPNF
Sbjct: 76  YDKFTHDWLAAARRLLKPNGAIWVIGSYHNIFRVGAALQDQGFWLLNDVVWRKSNPMPNF 135

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+R  NAHETLIWAS    +K YTFNY+ALKA N+ VQMRSDW++PIC+G ERL++  G
Sbjct: 136 RGKRLTNAHETLIWASKEEASK-YTFNYEALKALNDGVQMRSDWVLPICTGHERLKDAAG 194

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPE+LL RIL+++T PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y   
Sbjct: 195 DKAHPTQKPESLLHRILLATTNPGDVVLDPFFGTGTTGAVAKMLGRDFIGIEREEIYRQA 254

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           AT+R++ V+      L     KR EPRV F  +VERG+++PG+ L +        V ADG
Sbjct: 255 ATERLSRVRRFDATGLETTGSKRAEPRVPFGQVVERGMLRPGEELFSLGNRFKVKVRADG 314

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           TLI     GSIH+VGA + G+ +CNGW +W+F++ G++  I+ LR  +R E+
Sbjct: 315 TLIGNDVKGSIHQVGAALEGAPSCNGWTYWHFKRDGKMVPIDILRQQIRAEM 366


>gi|217977761|ref|YP_002361908.1| DNA methylase N-4/N-6 domain protein [Methylocella silvestris BL2]
 gi|217503137|gb|ACK50546.1| DNA methylase N-4/N-6 domain protein [Methylocella silvestris BL2]
          Length = 379

 Score =  447 bits (1151), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 208/352 (59%), Positives = 259/352 (73%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I+ G+ +  L +LPA SVD +FADPPYNLQL   L RPD SLVDAV D WDKF SF  
Sbjct: 23  NEILIGDCLEQLARLPAASVDAVFADPPYNLQLESTLSRPDQSLVDAVNDDWDKFDSFSH 82

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD+F+R+WL A RRV+KP  TL+VIGSYHNIFR+G+ LQ+  FWILNDIVWRK+NPMPNF
Sbjct: 83  YDSFSRSWLKAVRRVMKPEATLFVIGSYHNIFRVGSTLQDEGFWILNDIVWRKANPMPNF 142

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RGRRF NAHETLIWA+    AK Y FNY+ LKA NED Q+RSDWL PIC+G+ERL+  DG
Sbjct: 143 RGRRFTNAHETLIWAAKDSAAKNYRFNYELLKAGNEDCQLRSDWLFPICTGAERLKGSDG 202

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K HPTQKPEALL+RIL+++T PGD++LDPFFGSGT+GA AK+L R F+GIE  + Y   
Sbjct: 203 RKTHPTQKPEALLARILIAATNPGDVVLDPFFGSGTTGAAAKRLGRHFVGIERDKTYAAA 262

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  RI +V+ L    + +   KRTEPRVAF+ +VE GLI PG  L + +    ATV ADG
Sbjct: 263 ARARIDAVETLPEAAIALTPSKRTEPRVAFSAIVEAGLIAPGDSLVDDKQRHRATVRADG 322

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
            +  G  +GSIH++GA   G   CNGW +W+F + G+L  I+ LR + R +L
Sbjct: 323 AITLGPVVGSIHKIGALAQGLPACNGWTYWHFAQGGKLQPIDALRTVARGKL 374


>gi|258542065|ref|YP_003187498.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-01]
 gi|256633143|dbj|BAH99118.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-01]
 gi|256636200|dbj|BAI02169.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-03]
 gi|256639255|dbj|BAI05217.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-07]
 gi|256642309|dbj|BAI08264.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-22]
 gi|256645364|dbj|BAI11312.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-26]
 gi|256648419|dbj|BAI14360.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-32]
 gi|256651472|dbj|BAI17406.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654463|dbj|BAI20390.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-12]
          Length = 367

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 200/345 (57%), Positives = 261/345 (75%), Gaps = 1/345 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+I++G  +  +  LP+ SVD +FADPPYNLQL G+L RPD +LVD V D WDKFS  E 
Sbjct: 14  DQILRGECVETMRSLPSGSVDCVFADPPYNLQLRGELRRPDDTLVDGVDDDWDKFSDLEE 73

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTRAWL   RRVL  +GT+WVIGSYHNI+RIG +LQ+L FWILNDIVWRKSNPMPNF
Sbjct: 74  YDRFTRAWLAEARRVLHKDGTIWVIGSYHNIYRIGAILQDLGFWILNDIVWRKSNPMPNF 133

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RGRRF NAHETLIWA+    ++ Y FNY A+KA N+DVQMRSDW +P+C+G+ERLRN+ G
Sbjct: 134 RGRRFTNAHETLIWAARGQDSR-YRFNYQAMKALNDDVQMRSDWYLPLCTGNERLRNEHG 192

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            KLHPTQKPE+LL R+L++ST   D+ILDPF G+GT+ A+A++LRR FIGIE   DY++ 
Sbjct: 193 LKLHPTQKPESLLHRVLLASTTVNDVILDPFSGTGTTAAMARRLRRHFIGIERHPDYVEA 252

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  R+A+  PL    +     KR  PR+ F  LVE+G+I  G ++ + +  + ATV  DG
Sbjct: 253 AMARVAAETPLEADAVQTTQDKREAPRIPFGSLVEQGVIAAGTVVCDKKRRVHATVSPDG 312

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLR 365
           TL++GT+ GSIH++GA+++ + +CNGW FW+FE+ GEL  ++ LR
Sbjct: 313 TLVNGTKRGSIHKLGAQLTNAPSCNGWTFWHFERAGELLQLDVLR 357


>gi|126724760|ref|ZP_01740603.1| Site-specific DNA-methyltransferase [Rhodobacterales bacterium
           HTCC2150]
 gi|126705924|gb|EBA05014.1| Site-specific DNA-methyltransferase [Rhodobacterales bacterium
           HTCC2150]
          Length = 345

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 204/341 (59%), Positives = 260/341 (76%), Gaps = 1/341 (0%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           +  LP  SVDLIFADPPYNLQL G L+RPD+S VDAV D WD+F SF  YD F+ AWL A
Sbjct: 1   MNALPENSVDLIFADPPYNLQLKGDLHRPDNSKVDAVDDHWDQFDSFRVYDEFSNAWLKA 60

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
            +R+LKP+G +WVIGSYHNIFR+GT +QN  FW+LND++WRKSNPMPNFRG+RF NAHET
Sbjct: 61  AQRILKPDGAIWVIGSYHNIFRVGTAMQNAGFWMLNDVIWRKSNPMPNFRGKRFTNAHET 120

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           LIWAS + K+K  TFNY+ALKA NE +QMRSDW++P+C+G ERL+N+DG+K HPTQKPE+
Sbjct: 121 LIWASKTEKSKP-TFNYEALKALNEGIQMRSDWVLPLCTGHERLKNEDGDKAHPTQKPES 179

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           LL R+LV++T PGD++LDPFFG+GT+GAVAKKL R FIGIE +++Y  +AT R+  V+  
Sbjct: 180 LLHRVLVATTNPGDVVLDPFFGTGTTGAVAKKLGRDFIGIEREEEYRKVATARLRDVRKY 239

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSI 331
               L V   KR EPRV F  +VERG++ PG+ L +  G   A V ADGTLI     GSI
Sbjct: 240 DRSSLEVTQSKRAEPRVPFGQIVERGMLNPGENLFSLNGRHKAKVRADGTLIGDDVKGSI 299

Query: 332 HRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           H+VGA + G+ +CNGW +W ++  G++  I+ LR  VR E+
Sbjct: 300 HQVGAALEGAPSCNGWTYWGYKSEGKMVPIDLLRQQVRAEM 340


>gi|83950882|ref|ZP_00959615.1| modification methylase [Roseovarius nubinhibens ISM]
 gi|83838781|gb|EAP78077.1| modification methylase [Roseovarius nubinhibens ISM]
          Length = 371

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 208/350 (59%), Positives = 260/350 (74%), Gaps = 1/350 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I+ G+ I V+  LP  SVDLIFADPPYNLQL G+L+RPD+S VDAV D+WD+FSSF AYD
Sbjct: 18  ILSGDCIEVMNSLPEASVDLIFADPPYNLQLKGELHRPDNSQVDAVDDAWDQFSSFAAYD 77

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FT  WL A RR+LKPNG +WVIGSYHNIFR+G  LQN  FWILND+VWRKSNPMPNFRG
Sbjct: 78  KFTTEWLRAARRLLKPNGAIWVIGSYHNIFRVGASLQNEGFWILNDVVWRKSNPMPNFRG 137

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +R  NAHET+IWAS     K YTFNY+ALK+ NE +QMRSDW++PIC+G ERL++ +G+K
Sbjct: 138 KRLTNAHETMIWASKEEGGK-YTFNYEALKSLNEGIQMRSDWVLPICTGHERLKDANGDK 196

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE+LL RILV ST PGD++LDPFFG+GT+GAVAK L R +IGIE +  Y ++A 
Sbjct: 197 AHPTQKPESLLHRILVGSTNPGDVVLDPFFGTGTTGAVAKMLGRDYIGIEREAAYREVAE 256

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KR+A V+      L V   KR EPRV F  L+ERG+++PG+ L +      A V ADGTL
Sbjct: 257 KRLAKVRKYDREALQVSQSKRAEPRVPFGQLIERGMLRPGENLYSMNLRHKAKVRADGTL 316

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           I     GSIH+VGA + G+ +CNGW +W  ++ G+   I+  R  +R E+
Sbjct: 317 IGDDIKGSIHQVGAALEGAPSCNGWTYWCIKRDGKQVPIDVFRQQIRAEM 366


>gi|94497422|ref|ZP_01303992.1| DNA methylase N-4/N-6 [Sphingomonas sp. SKA58]
 gi|94423053|gb|EAT08084.1| DNA methylase N-4/N-6 [Sphingomonas sp. SKA58]
          Length = 391

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 201/345 (58%), Positives = 265/345 (76%), Gaps = 2/345 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D +++G+ I+ +  LP K +D+IFADPPYNLQL G L+RP+ S VDAV + WDKF +  +
Sbjct: 40  DTLLRGDCIAQMAALPDKCIDMIFADPPYNLQLGGDLFRPEGSRVDAVDNDWDKFDTLGS 99

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FT+AWL   RR+LKPNGT+WVIGSYHNIFR+G+ LQ+  FWILNDI+WRK+NPMPNF
Sbjct: 100 YDRFTKAWLREARRILKPNGTIWVIGSYHNIFRVGSALQDEGFWILNDIIWRKANPMPNF 159

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWAS    AK YTFNY A+K  N+++QMRSDW++PIC G ERL+ ++G
Sbjct: 160 KGTRFTNAHETLIWASQGEDAK-YTFNYKAMKTLNDELQMRSDWVLPICGGQERLK-RNG 217

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K HPTQKPE+LL R+L+S TKPGD++LDPFFG+GT+GAVAK+L R +IGIE ++DYI++
Sbjct: 218 TKAHPTQKPESLLYRVLLSCTKPGDVVLDPFFGTGTTGAVAKRLGRRWIGIEREEDYIEV 277

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A +RIA   PL    LT++   R++P+VAF  LVE G ++PG ILT+ +    A V ADG
Sbjct: 278 ALERIADALPLDESALTIMQSARSQPKVAFGTLVETGYLKPGAILTDTKRRWQAQVRADG 337

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLR 365
           +L  G + GSIH++GA + G+ +CNGW FW++E  G L  I+ LR
Sbjct: 338 SLAVGADSGSIHKMGATLQGAPSCNGWTFWHYEAEGGLKPIDALR 382


>gi|296116693|ref|ZP_06835303.1| DNA methylase N-4/N-6 domain protein [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295976905|gb|EFG83673.1| DNA methylase N-4/N-6 domain protein [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 364

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 200/351 (56%), Positives = 263/351 (74%), Gaps = 1/351 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+I++G+ + +++ LPA S+D +FADPPYNLQL G+L RPD S+VD V D WDKF+  +A
Sbjct: 7   DQILRGDCVEMMQTLPAGSIDCVFADPPYNLQLRGELRRPDDSIVDGVDDDWDKFADLQA 66

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTRAWL   RRVL+ +GT+WVIGSYHNIFRIG +LQ+L FWILND++WRKSNPMPNF
Sbjct: 67  YDRFTRAWLSEARRVLRKDGTIWVIGSYHNIFRIGAILQDLGFWILNDVIWRKSNPMPNF 126

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RGRRF NAHETLIWA+  P ++ Y FNY A+KA N+DVQMRSDW +P+C+G ERLRN+ G
Sbjct: 127 RGRRFTNAHETLIWAARGPDSR-YRFNYQAMKALNDDVQMRSDWYLPLCTGGERLRNEHG 185

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            KLHPTQKPE+LL R+L++ST   D++LDPF G+GT+ A+A++LRR FIGIE   DY + 
Sbjct: 186 LKLHPTQKPESLLHRVLIASTNVDDVVLDPFTGTGTTPAMARRLRRRFIGIERHPDYAEA 245

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  R    +P+    +     +R  PR+ F  LVER ++ PG +L + Q  +SATV  DG
Sbjct: 246 AIGRARREKPVPLDSVLTTPARRECPRIPFGTLVERAILPPGTVLMDRQKRVSATVAPDG 305

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           TLISG   GSIH++GA ++ + +CNGW FW+FE+ G L  ++ LR  +R E
Sbjct: 306 TLISGGHRGSIHKLGATLTNAPSCNGWTFWHFERAGVLQPLDILRNELRAE 356


>gi|312113930|ref|YP_004011526.1| DNA methylase N-4/N-6 domain protein [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219059|gb|ADP70427.1| DNA methylase N-4/N-6 domain protein [Rhodomicrobium vannielii ATCC
           17100]
          Length = 373

 Score =  445 bits (1145), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 205/353 (58%), Positives = 272/353 (77%), Gaps = 2/353 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I++G+ + +L ++P+ SVDL+FADPPYNLQL G+L RP+++ VD V  +WD+F+ F  
Sbjct: 16  EGILQGDCLDILRRMPSASVDLVFADPPYNLQLGGELLRPNNTRVDGVDHAWDRFADFAT 75

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD F+RAWL  CRRVLKPNG LWVIG+YHNIFR+GT LQ+L FW++ND++W K+NPMPNF
Sbjct: 76  YDRFSRAWLSECRRVLKPNGALWVIGTYHNIFRLGTALQDLGFWMMNDVIWLKTNPMPNF 135

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWA+   KA+  TFNYD++KA N+D+QMRSDWLIPICSG ERLR+  G
Sbjct: 136 KGTRFTNAHETLIWAARDEKAR-PTFNYDSMKAFNDDLQMRSDWLIPICSGPERLRDDGG 194

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K HPTQKPEALL+R+L+++TKPGD++LDPFFG+GT+GAVAK LRR FIGIE   DY+  
Sbjct: 195 RKAHPTQKPEALLARVLMATTKPGDLVLDPFFGTGTTGAVAKLLRRRFIGIERDPDYVAA 254

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A+ RIA+++P       ++T KR EPRV F +++ERG+++PG +L +A+  I A V AD 
Sbjct: 255 ASARIAAIEPCDAKAAALITSKRAEPRVPFGMVLERGMLRPGDVLFDAKAEIRAQVMADA 314

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGE-LHSINTLRILVRKEL 372
           +L+     GSIH VGAK  G   CNGW FW+FE+  + L  I+ LR+ VRK +
Sbjct: 315 SLMWNGTRGSIHSVGAKAQGRGACNGWTFWHFEQPKDGLAPIDLLRMEVRKTM 367


>gi|330993888|ref|ZP_08317820.1| Modification methylase SmeI [Gluconacetobacter sp. SXCC-1]
 gi|329759156|gb|EGG75668.1| Modification methylase SmeI [Gluconacetobacter sp. SXCC-1]
          Length = 362

 Score =  445 bits (1144), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 203/351 (57%), Positives = 265/351 (75%), Gaps = 1/351 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D++++G+ + +++ LPA S+D +FADPPYNLQL G+L RPD S+VD V D WDKF+  +A
Sbjct: 7   DQVLRGDCVEMMKTLPAASIDCVFADPPYNLQLKGELRRPDDSIVDGVDDDWDKFTDLQA 66

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YDAFTRAWL   RRVL+ +GT+WVIGSYHNIFRIG +LQ+L FWILND++WRKSNPMPNF
Sbjct: 67  YDAFTRAWLTEARRVLRKDGTIWVIGSYHNIFRIGAILQDLGFWILNDVIWRKSNPMPNF 126

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RGRRF NAHETLIWA+    ++ Y FNY A+KA N+DVQMRSDW +P+C+G ERLRN+ G
Sbjct: 127 RGRRFTNAHETLIWAARGADSR-YRFNYQAMKALNDDVQMRSDWYLPLCTGGERLRNEHG 185

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            KLHPTQKPE+LL R+LV+ST   D++LDPF G+GT+ A+A++LRR FIGIE   DY + 
Sbjct: 186 LKLHPTQKPESLLHRVLVASTNVDDVVLDPFTGTGTTTAMARRLRRRFIGIERHPDYAEA 245

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  R    +PL    +     +R  PRV F LLVERG++  G +L + Q  + ATV  DG
Sbjct: 246 AIGRARREKPLPLDSVQTTPARRESPRVPFGLLVERGMVPAGTVLMDRQKRVRATVSPDG 305

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           TL+SG   GSIH++GA+++ + +CNGW FWYFE+ GEL  ++ LR  +R E
Sbjct: 306 TLVSGRHRGSIHKMGAQLTNAPSCNGWTFWYFEREGELVQLDVLRGDIRAE 356


>gi|302383800|ref|YP_003819623.1| DNA methylase N-4/N-6 domain protein [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194428|gb|ADL02000.1| DNA methylase N-4/N-6 domain protein [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 359

 Score =  444 bits (1142), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 205/349 (58%), Positives = 257/349 (73%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I +G+ + +L  LP +SVD++FADPPYNLQL G L RPD+S VDAV D WDKF SF A
Sbjct: 7   DIIHRGDCLEILRGLPDRSVDMVFADPPYNLQLGGDLLRPDNSKVDAVDDDWDKFDSFAA 66

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YDAF R WL  CRRVLK  G+LWVIGSYHNIFR+GT +Q++ +W+LNDIVWRK+NPMPNF
Sbjct: 67  YDAFCRDWLKECRRVLKDEGSLWVIGSYHNIFRLGTAIQDIGYWVLNDIVWRKTNPMPNF 126

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWA+ S + K YTFNYDALKA NED QMRSDW   +C+G ER++ +DG
Sbjct: 127 KGTRFTNAHETLIWAAKSREQKRYTFNYDALKAFNEDTQMRSDWTFALCTGEERIKGEDG 186

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPEALL R+++++T+PGD+ILDPFFG+GT+GA AK+L R +IGIE   +Y ++
Sbjct: 187 KKAHPTQKPEALLHRVILAATRPGDVILDPFFGTGTTGAAAKRLGRHYIGIERDPEYANV 246

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KRI +V P    +L V   KR E +V F  LVE GL+ PG +L   +G   A V ADG
Sbjct: 247 AEKRIKAVLPARPEDLIVTGSKRAEVKVPFGALVEAGLLSPGDVLYCPKGEREARVRADG 306

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVR 369
           +L+SG   GSIH++GA    +  CNGW +W F     L SI+ LR  VR
Sbjct: 307 SLVSGAMSGSIHKLGALFENAPACNGWTYWRFRTDTGLRSIDALRAEVR 355


>gi|294012714|ref|YP_003546174.1| putative adenine-specific DNA-methyltransferase [Sphingobium
           japonicum UT26S]
 gi|292676044|dbj|BAI97562.1| putative adenine-specific DNA-methyltransferase [Sphingobium
           japonicum UT26S]
          Length = 371

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 201/345 (58%), Positives = 265/345 (76%), Gaps = 2/345 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D++++G+ I+ + KLP   +D+IFADPPYNLQL G L+RP+   VDAV + WDKF +  +
Sbjct: 20  DRLLRGDCIAEMAKLPDACIDMIFADPPYNLQLGGDLFRPEGGRVDAVDNDWDKFDTLGS 79

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FT+AWL   RR+LKPNGT+WVIGSYHNIFR+GT LQ+  FWILNDIVWRKSNPMPNF
Sbjct: 80  YDRFTKAWLREARRILKPNGTIWVIGSYHNIFRVGTALQDEGFWILNDIVWRKSNPMPNF 139

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWAS    AK YTFNY A+K  N+++QMRSDW++PIC G ERL+ ++G
Sbjct: 140 KGTRFTNAHETLIWASQGEDAK-YTFNYKAMKTLNDELQMRSDWVLPICGGQERLK-RNG 197

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K HPTQKPEALL R+L++ T+PGD++LDPFFG+GT+GAVAK+L R +IGIE ++DYI++
Sbjct: 198 TKAHPTQKPEALLYRVLLACTRPGDVVLDPFFGTGTTGAVAKRLGRRWIGIEREEDYIEV 257

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A +RI +  PL    LT++   + +P+VAF  LVE G +QPG +LT+++    A V ADG
Sbjct: 258 ALERIEAALPLDESALTIMQSAKAQPKVAFGTLVETGYLQPGAVLTDSKRRWQAVVRADG 317

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLR 365
           +L  GT+ GSIH++GA + G+ +CNGW FW+ E  G L  I+ LR
Sbjct: 318 SLSVGTDTGSIHKMGATLQGAPSCNGWTFWHCEVEGVLKPIDALR 362


>gi|148557470|ref|YP_001265052.1| DNA methylase N-4/N-6 domain-containing protein [Sphingomonas
           wittichii RW1]
 gi|148502660|gb|ABQ70914.1| DNA methylase N-4/N-6 domain protein [Sphingomonas wittichii RW1]
          Length = 382

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 204/346 (58%), Positives = 263/346 (76%), Gaps = 2/346 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I++G+ I  +  LP + VD+IFADPPYNLQL G L+RPD S VDAV D WDKF +F A
Sbjct: 29  NEILRGDCIETMRALPDRCVDMIFADPPYNLQLGGDLHRPDGSQVDAVDDDWDKFDTFAA 88

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL    R+LK +GT+WVIGSYHNIFR+GT LQ+  FW+LNDIVWRK+NPMPNF
Sbjct: 89  YDRFTRDWLREAHRILKDDGTIWVIGSYHNIFRVGTALQDQGFWVLNDIVWRKANPMPNF 148

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIW S + KAK YTFNY  +KA N+DVQMRSDW +PICSG ERL++ DG
Sbjct: 149 KGTRFTNAHETLIWCSKAEKAK-YTFNYRTMKALNDDVQMRSDWTLPICSGGERLKDDDG 207

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K HPTQKPE+LL R++++ T+PGD++LDPFFG+GT+GAVA++L R +IGIE +  YI +
Sbjct: 208 HKAHPTQKPESLLYRVMLACTEPGDLVLDPFFGTGTTGAVARRLGRRWIGIEREDKYIKV 267

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           AT+RIA+  PL    +  +  K+  PR+AF LLVE GLI PG ++T+A+   SATV ADG
Sbjct: 268 ATQRIAATLPLDESAMMSIPEKKAMPRIAFGLLVEGGLIPPGSVVTDARRRWSATVRADG 327

Query: 321 TLISGT-ELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLR 365
            L SG   +GSIHR+GA++  + +CNGW+FW+ E    L  I+ +R
Sbjct: 328 MLASGCGAIGSIHRLGAQLQKAPSCNGWSFWHIETAQGLEPIDAVR 373


>gi|114328523|ref|YP_745680.1| adenine-specific methyltransferase [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316697|gb|ABI62757.1| adenine-specific methyltransferase [Granulibacter bethesdensis
           CGDNIH1]
          Length = 385

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 202/345 (58%), Positives = 261/345 (75%), Gaps = 1/345 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+++ G+ + V++ LP  SVD IFADPPYNLQL G+L RPD S+VD V D WD+F+ + A
Sbjct: 19  DQVLLGDCVQVMQMLPTGSVDCIFADPPYNLQLRGELRRPDESIVDGVDDDWDRFTDYAA 78

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YDAF+RAWL  CRR+L+ +GT+WVIG+YHNIFR+GT+LQ+L FWILND+VWRK+NPMPNF
Sbjct: 79  YDAFSRAWLTECRRLLRKDGTIWVIGAYHNIFRLGTILQDLGFWILNDVVWRKANPMPNF 138

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RGRRF NAHETLIWA+    ++ + FNY A+K  N+DVQMRSDW +P+C+GSER+RN  G
Sbjct: 139 RGRRFTNAHETLIWAARGQDSR-HRFNYQAMKTLNDDVQMRSDWFLPLCTGSERMRNDHG 197

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            KLHPTQKPE+LL R+L+SST PGD++LDPF G+GTS AVAK+L+RSFIGIE    Y + 
Sbjct: 198 LKLHPTQKPESLLYRVLLSSTVPGDVVLDPFLGTGTSAAVAKRLQRSFIGIERHPAYAEA 257

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  R+ SV+P     L ++  +R + RV F  LVE+GL+  G IL +    +SA V ADG
Sbjct: 258 AIGRLRSVEPAPLDNLNIMPSRREQKRVPFGSLVEQGLLPMGSILMDRLRRVSALVQADG 317

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLR 365
           ++ SG   GSIH+VGA V  + +CNGW FW+FE  GE   I+ LR
Sbjct: 318 SIASGAHRGSIHQVGAAVQNAPSCNGWTFWFFELRGEWVPIDVLR 362


>gi|254436719|ref|ZP_05050213.1| DNA methylase domain protein [Octadecabacter antarcticus 307]
 gi|198252165|gb|EDY76479.1| DNA methylase domain protein [Octadecabacter antarcticus 307]
          Length = 373

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 204/350 (58%), Positives = 261/350 (74%), Gaps = 1/350 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I+ G+ I V+  LP  SVDLIFADPPYNLQL G L+RPD+S VDAV + WD+F+SF+ YD
Sbjct: 22  ILDGDCIEVMNSLPEGSVDLIFADPPYNLQLKGDLHRPDNSKVDAVDNDWDQFASFKVYD 81

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FT AWL A RR+LK +G +WVIGSYHN+FR+GT LQN  FWILND+VWRKSNPMPNFRG
Sbjct: 82  DFTHAWLKAARRILKKDGAIWVIGSYHNVFRMGTELQNQGFWILNDVVWRKSNPMPNFRG 141

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +R  NAHETLIWAS S  +K  TFNY+ALKA NE +QMRSDW++PIC+G ERL+N  G+K
Sbjct: 142 KRLTNAHETLIWASKSETSKP-TFNYEALKALNEGIQMRSDWVLPICTGHERLKNDQGDK 200

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE+LL R+L+ +T PGD++LDPFFG+GT+GAVAK L R +IGIE + +Y  +A 
Sbjct: 201 AHPTQKPESLLHRVLLGTTNPGDVVLDPFFGTGTTGAVAKMLGRDYIGIEREAEYRAVAA 260

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           +R+A ++   +  L V   KR EPRV F  +VERG+++PG+ L +  G   A V ADGTL
Sbjct: 261 RRLAKIRKFDSEALEVTQSKRAEPRVPFGQVVERGMLRPGEELWSMNGRHKAKVRADGTL 320

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           I     GSIH+VGA    + +CNGW +W+F + G+   I+ LR  +R E+
Sbjct: 321 IGADAKGSIHQVGAACENAPSCNGWTYWHFRRDGKKVPIDLLRQQIRSEM 370


>gi|220921468|ref|YP_002496769.1| DNA methylase N-4/N-6 domain-containing protein [Methylobacterium
           nodulans ORS 2060]
 gi|219946074|gb|ACL56466.1| DNA methylase N-4/N-6 domain protein [Methylobacterium nodulans ORS
           2060]
          Length = 368

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/353 (60%), Positives = 265/353 (75%), Gaps = 2/353 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN-GQLYRPDHSLVDAVTDSWDKFSSFE 79
           D++I G+ I+ L+ LP  SVDL+FADPPYNLQL    L RPD S VDAV D WD+F+SFE
Sbjct: 13  DEVIHGDCIAALDALPPSSVDLVFADPPYNLQLGPASLLRPDQSAVDAVDDDWDQFASFE 72

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYDAFTR WL ACRRV+KPN TLWVIGSYHNIFR+G+ LQ+L FWILNDIVWRK+NPMPN
Sbjct: 73  AYDAFTRQWLQACRRVMKPNATLWVIGSYHNIFRVGSALQDLGFWILNDIVWRKANPMPN 132

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+RF NAHETLIWAS S + KGYTF+Y+ALK  N+D+QMRSDW +P+C+G ERL+  D
Sbjct: 133 FRGKRFTNAHETLIWASRSAQ-KGYTFHYEALKGGNDDLQMRSDWFLPLCTGEERLKGAD 191

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G KLHPTQKPEAL++R ++S++ PGD++LDPFFG+GT+GA AK+L R FIGIE +  Y+ 
Sbjct: 192 GRKLHPTQKPEALVARTILSASNPGDVVLDPFFGTGTTGAAAKRLGRRFIGIEREPAYVQ 251

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A +RIA+V+PL    L     KR EPRV F  L+E GLI+ G  LT+ +    A V  D
Sbjct: 252 AARERIAAVEPLSTAALLTAPTKRAEPRVPFLSLLEAGLIRAGSQLTDERRRFKALVRPD 311

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           GT+ +G   GSIH++GA V G   CNGW FW+ E+ G L  I+  R  +R  L
Sbjct: 312 GTISAGPACGSIHKIGALVQGLPACNGWTFWHAERGGRLVPIDAFRAEIRAGL 364


>gi|83594540|ref|YP_428292.1| DNA methylase N-4/N-6 [Rhodospirillum rubrum ATCC 11170]
 gi|83577454|gb|ABC24005.1| DNA methylase N-4/N-6 [Rhodospirillum rubrum ATCC 11170]
          Length = 367

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 202/359 (56%), Positives = 270/359 (75%), Gaps = 5/359 (1%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I +G+SI V+  LP+ S+D+IFADPPYN+ L G+L RPD+S VD V D WD+F S  A
Sbjct: 8   NRIYQGDSIEVMRSLPSASIDMIFADPPYNMMLGGELLRPDNSRVDGVDDEWDRFESQRA 67

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  FTR+WL   RR+LK NGT+WVIGSYHNI+R+G  LQ+L FW LND+VWRK+NPMPNF
Sbjct: 68  YAEFTRSWLREARRLLKDNGTIWVIGSYHNIYRVGAELQDLGFWTLNDVVWRKANPMPNF 127

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETL+W + S +A+ YTFNY+A+K+ NE +QMRSDW +P+C+G ERL+ +DG
Sbjct: 128 KGTRFTNAHETLLWCAKSAEAR-YTFNYEAMKSLNEGLQMRSDWTLPLCNGKERLKAEDG 186

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K+HPTQKPE+LL R+++SST PGDIILDPFFG+GT+GAVAK L R +IG+E  + YI  
Sbjct: 187 KKVHPTQKPESLLYRVILSSTHPGDIILDPFFGTGTTGAVAKLLGRQWIGLERDEAYIAA 246

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A +RIA V+P+ ++ L +   K++EPR+ F  +VERGL+ PG +L ++Q   +A V ADG
Sbjct: 247 ARQRIAQVEPIKDLRLLITPSKKSEPRIPFGTVVERGLLAPGSLLCDSQRRWTAKVRADG 306

Query: 321 TLIS----GTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYNC 375
           TL++    G   GSIH+VGA V G+  CNGW FW+ ++ G    I+ LR  VR EL  C
Sbjct: 307 TLVATSSHGDHRGSIHQVGAAVQGAPACNGWTFWHIDRPGGAVPIDVLRQQVRAELEAC 365


>gi|209966434|ref|YP_002299349.1| modification methylase, putative [Rhodospirillum centenum SW]
 gi|209959900|gb|ACJ00537.1| modification methylase, putative [Rhodospirillum centenum SW]
          Length = 366

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 204/357 (57%), Positives = 271/357 (75%), Gaps = 5/357 (1%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I+ G+ I ++ ++PA SVD++FADPPYNLQL+G+L RP+HS VD V + WD+FS    
Sbjct: 11  NRILVGDCIQLMSQMPAGSVDMVFADPPYNLQLSGELLRPNHSRVDGVDEEWDRFSDLPT 70

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL A R  LK +GTLWVIGSYHNIFR+G++LQ+L FWILNDIVWRKSNPMPNF
Sbjct: 71  YDRFTRDWLGAARHALKDDGTLWVIGSYHNIFRVGSILQDLGFWILNDIVWRKSNPMPNF 130

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +GRRF NAHETLIW + S +AK Y F Y+A+K  NE++QMRSDW +P+C+G+ERLR +DG
Sbjct: 131 KGRRFTNAHETLIWVAKSREAK-YYFAYEAMKNLNEELQMRSDWTLPLCTGAERLRGEDG 189

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPEALL R+L+++T+P D++LDPFFG+GT+GAVAK+LRR +IGIE + +Y  +
Sbjct: 190 QKAHPTQKPEALLYRVLLAATRPDDLVLDPFFGTGTTGAVAKQLRRRWIGIEREHEYARL 249

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  RIA+V+ L   EL  +  +RT+PRV F  LVERGL++PG  L + +  + A V ADG
Sbjct: 250 ANARIAAVEELAEPELVDVPARRTQPRVPFGHLVERGLLKPGTNLFDQRRRVIAKVRADG 309

Query: 321 TLIS----GTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           TL++    G   GSIH+VGA V G   CNGW +W+F++   L  I+ LR  V  E++
Sbjct: 310 TLVAQNHLGQHSGSIHKVGAAVQGLPACNGWTYWHFQEGKSLAPIDVLRQKVIAEMH 366


>gi|329850291|ref|ZP_08265136.1| modification methylase CcrMI [Asticcacaulis biprosthecum C19]
 gi|328840606|gb|EGF90177.1| modification methylase CcrMI [Asticcacaulis biprosthecum C19]
          Length = 374

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 201/352 (57%), Positives = 258/352 (73%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I  G  I VL+ LP  SVDL+FADPPYNLQL G L RPD+S VDAV D WD+F+SFE 
Sbjct: 22  DTIHIGECIEVLKSLPDASVDLVFADPPYNLQLGGDLLRPDNSKVDAVDDEWDQFASFEV 81

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR W+  CRRVLK +G +WVIGSYHNIFR+G  +Q+L FW++ND++WRK+NPMPNF
Sbjct: 82  YDKFTREWMRECRRVLKDDGAMWVIGSYHNIFRLGVAMQDLGFWVMNDVIWRKANPMPNF 141

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWA+ +   K YTFNYDALKA NED QMRSDWLI +C+G ERL++++G
Sbjct: 142 KGTRFTNAHETLIWATKAKGQKRYTFNYDALKAFNEDTQMRSDWLISLCTGDERLKDENG 201

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K HPTQKPE+LL R+L++ +KPG ++LDPFFG+GT+GA AK+L R FIGIE  + Y   
Sbjct: 202 NKAHPTQKPESLLYRVLLACSKPGQVVLDPFFGTGTTGAAAKRLGRHFIGIERDETYARH 261

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A +RIA V P     L V+  K+ EPR+ F  LVE GL+QPG +L   +G+ +A + ADG
Sbjct: 262 ARERIAKVIPTTAENLNVVGSKKAEPRIPFGSLVEAGLLQPGDMLYTPKGDKTAKIRADG 321

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           +L+ G   GSIH++GA +  S  CNGW +W F+    L  I+ LR  +R ++
Sbjct: 322 SLVYGDLSGSIHKMGAMMEQSPACNGWTYWRFKTDAGLKPIDDLRARIRGDM 373


>gi|114769696|ref|ZP_01447306.1| Site-specific DNA-methyltransferase [alpha proteobacterium
           HTCC2255]
 gi|114549401|gb|EAU52283.1| Site-specific DNA-methyltransferase [alpha proteobacterium
           HTCC2255]
          Length = 368

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 212/352 (60%), Positives = 266/352 (75%), Gaps = 1/352 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + II G+ + V+  LP  S+DLIFADPPYNLQL G L+RPD+S VDAV D WD+F SF  
Sbjct: 16  NNIIDGDCVEVMNSLPENSIDLIFADPPYNLQLKGDLHRPDNSKVDAVDDHWDQFDSFAI 75

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD F+R WL A RRVLKPNG LWVIGSYHNIFR+GT LQ+  FWILND++WRKSNPMPNF
Sbjct: 76  YDKFSRNWLKAARRVLKPNGALWVIGSYHNIFRVGTALQDAGFWILNDVIWRKSNPMPNF 135

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG R  NAHET+IWA  + K+K  TFNY+ALKA N+ VQMRSDW +PIC+G+ERL+N  G
Sbjct: 136 RGVRLTNAHETMIWAGKTEKSKP-TFNYEALKALNDGVQMRSDWHLPICNGNERLKNDAG 194

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPE+LL R++V ST  GD+ILDPFFGSGT+GAVAKKL R+FIGIE +++Y  +
Sbjct: 195 DKAHPTQKPESLLHRVIVGSTNEGDVILDPFFGSGTTGAVAKKLGRNFIGIEREEEYRKV 254

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KRI +++      L V T KR EPRV F  +VERG+++PG  L +  G  SA + ADG
Sbjct: 255 AKKRIKAIKKYDVESLKVSTSKRAEPRVPFGQVVERGMLKPGDQLYSLNGRHSAKIHADG 314

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           TL++  + GSIH+VGA + G+ +CNGW +W F+K GE   I+ LR  +R E+
Sbjct: 315 TLVAHDQRGSIHQVGAALEGAPSCNGWTYWCFKKRGEAIPIDMLRKKIRAEM 366


>gi|307294524|ref|ZP_07574366.1| DNA methylase N-4/N-6 domain protein [Sphingobium chlorophenolicum
           L-1]
 gi|306878998|gb|EFN10216.1| DNA methylase N-4/N-6 domain protein [Sphingobium chlorophenolicum
           L-1]
          Length = 379

 Score =  441 bits (1134), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 200/345 (57%), Positives = 262/345 (75%), Gaps = 2/345 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D +++G+ I+ + KLP   +D+IFADPPYNLQL G L+RP+   VDAV + WDKF +  +
Sbjct: 28  DCLLRGDCIAEMAKLPDACIDMIFADPPYNLQLGGDLFRPEGGRVDAVDNDWDKFDTLGS 87

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FT+AWL   RR+LKPNG++WVIGSYHNIFR+GT LQ+  FWILNDI+WRKSNPMPNF
Sbjct: 88  YDRFTKAWLREARRILKPNGSIWVIGSYHNIFRVGTALQDEGFWILNDIIWRKSNPMPNF 147

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWAS    AK YTFNY A+K  N+++QMRSDW++PIC G ERL+ ++G
Sbjct: 148 KGTRFTNAHETLIWASQGEDAK-YTFNYKAMKTLNDELQMRSDWVLPICGGQERLK-RNG 205

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K HPTQKPEALL R++++ TKPGD++LDPFFG+GT+GAVAK+L R +IGIE + DYI++
Sbjct: 206 TKAHPTQKPEALLYRVMLACTKPGDVVLDPFFGTGTTGAVAKRLGRKWIGIEREDDYIEV 265

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A +RI +  PL    LT++   R +P+VAF  LVE G +QPG +LT+A+    A V ADG
Sbjct: 266 ALERIEAALPLDESALTIMQTARQQPKVAFGTLVETGYLQPGAVLTDAKRRWQAVVRADG 325

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLR 365
           +L  G + GSIH++GA + G+ +CNGW FW+ E  G L  I+ LR
Sbjct: 326 SLSVGKDTGSIHKMGATLQGAPSCNGWTFWHCEIDGALKPIDALR 370


>gi|300024384|ref|YP_003756995.1| DNA methylase N-4/N-6 domain protein [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526205|gb|ADJ24674.1| DNA methylase N-4/N-6 domain protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 375

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 200/350 (57%), Positives = 259/350 (74%), Gaps = 1/350 (0%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I+ G+ I+ L+K+   SVDL+FADPPYNLQL G L RP+++ VD V D+WDKF  F  Y
Sbjct: 14  RILVGDCINELKKIATASVDLVFADPPYNLQLAGDLLRPNNTKVDGVDDAWDKFQDFAEY 73

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D+F RAWL  CRRVLKP+G +WVIGSYHNIFR+G  +Q+L FWI ND++WRK NPMPNFR
Sbjct: 74  DSFCRAWLKECRRVLKPDGAIWVIGSYHNIFRLGVAIQDLGFWIQNDVIWRKVNPMPNFR 133

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G+RF NAHET+IWA    K++  TFNY++LKA+N+D+QMRSDWL PICSG ERL++  G 
Sbjct: 134 GKRFTNAHETMIWAGRDRKSR-VTFNYESLKASNDDLQMRSDWLFPICSGPERLKDDGGR 192

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HPTQKPEALL RI+++STKPGD +LDPFFG+GT+GAVAK+L R FIGIE   DY   A
Sbjct: 193 KAHPTQKPEALLHRIMIASTKPGDTVLDPFFGTGTTGAVAKRLGRKFIGIERDTDYARAA 252

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
            +RIA V+PL    +  +  KR+EPR+ F  ++E G+++PGQ L   +  + A V ADGT
Sbjct: 253 DERIAKVRPLDLDAIEAIPSKRSEPRIPFGQILELGILEPGQKLFGPRREVRAEVRADGT 312

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           L    +  SIHR+GA V G   CNGW +W+FE  G+L  I+ LR   +++
Sbjct: 313 LACAGQQASIHRLGAMVQGKAACNGWTYWHFEAEGKLRPIDVLRGEAKRQ 362


>gi|114570743|ref|YP_757423.1| DNA methylase N-4/N-6 domain-containing protein [Maricaulis maris
           MCS10]
 gi|114341205|gb|ABI66485.1| DNA methylase N-4/N-6 domain protein [Maricaulis maris MCS10]
          Length = 359

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 197/354 (55%), Positives = 263/354 (74%), Gaps = 1/354 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+I++G  + V++ LP +SVDL+FADPPYNLQL G L+RPD+S V AV + WD+   F+ 
Sbjct: 7   DQILEGECVEVMKSLPDESVDLVFADPPYNLQLGGDLHRPDNSKVSAVDNDWDQIGGFDE 66

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FT  W+   RRVLKPNG +WVIGSYHNIFR+G +LQ+  FW+LNDI+WRKSNPMPNF
Sbjct: 67  YDLFTWNWMEEARRVLKPNGAIWVIGSYHNIFRVGGILQDAGFWVLNDIIWRKSNPMPNF 126

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWA+ +  A+  TFNY A+KA N+ VQMRSDW +PIC+G ERL+++DG
Sbjct: 127 KGTRFTNAHETLIWAAKTKDARP-TFNYAAMKALNDGVQMRSDWTLPICTGGERLKDEDG 185

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPE+LL R+L+S+T PGD++LDPFFG+GT+GA AK+L R +IGIE    Y+D+
Sbjct: 186 KKAHPTQKPESLLHRVLLSTTNPGDVVLDPFFGTGTTGAAAKRLGRHYIGIERDTAYLDV 245

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KR+A++    +  L V   KR +PR+ F  LVERG+++PG  L   +G  +A V ADG
Sbjct: 246 ARKRLAAITRGASDTLDVTQSKRAQPRIPFGALVERGMLKPGDTLYCPKGRNTARVRADG 305

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           TLI+GT  GSIH+VGA++  + +CNGW +W+      L  I+ +R  +R  L N
Sbjct: 306 TLIAGTSAGSIHQVGAQLQSAPSCNGWTYWHIRTKQGLAPIDVMRAEIRATLEN 359


>gi|23016143|ref|ZP_00055902.1| COG0863: DNA modification methylase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 358

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 205/353 (58%), Positives = 268/353 (75%), Gaps = 4/353 (1%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I+ G+ I+++  LPA SVDL+FADPPYNLQL G+L RP++S V+ V + WD+FS F AYD
Sbjct: 8   ILSGDCIAMMNSLPAGSVDLVFADPPYNLQLGGELLRPNNSKVEGVDEDWDRFSDFAAYD 67

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           AFTR WL A RRVLK +G LWVIGSYHNIFR+G +LQ+L FW+LNDIVWRK+NPMPNF+G
Sbjct: 68  AFTREWLKAARRVLKDDGGLWVIGSYHNIFRVGAILQDLGFWMLNDIVWRKTNPMPNFKG 127

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
            RF NAHET+IW + S  ++ YTFNYD++K+ N+D+QMRSDW +P+C+G+ERLR K G K
Sbjct: 128 TRFTNAHETMIWCAKSSDSR-YTFNYDSMKSLNDDLQMRSDWTLPLCTGAERLR-KAGRK 185

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE+LL R++++STKPGD++LDPFFG+GT+GAVAKKL R+FIG E   DYI  A 
Sbjct: 186 THPTQKPESLLYRVIMASTKPGDVVLDPFFGTGTTGAVAKKLGRNFIGCERDPDYIAAAK 245

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL-TNAQGNISATVCADGT 321
           +RIA V  + +  L +   KR EPR+ F  ++ERGL+ PG +L    + +  A V ADGT
Sbjct: 246 ERIAKVIQVADPSLLMTPSKRAEPRIPFGTVLERGLLTPGDLLFGGTRHDKVAKVRADGT 305

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELH-SINTLRILVRKELY 373
           LI+    GSIH+VGA V G+  CNGW +W+F+  GE +  I+ LR  +R EL+
Sbjct: 306 LITDDHRGSIHKVGALVQGAPACNGWTYWHFQASGEDYLPIDVLRQKIRAELH 358


>gi|296284401|ref|ZP_06862399.1| modification methylase [Citromicrobium bathyomarinum JL354]
          Length = 383

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 200/346 (57%), Positives = 255/346 (73%), Gaps = 1/346 (0%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I+ G+ +  + +LP  SVDL+FADPPYNLQL G L RPD S VDAVTD WD+F SF+ Y
Sbjct: 32  QILDGDCVEAMRRLPDNSVDLVFADPPYNLQLGGDLNRPDGSHVDAVTDHWDQFDSFKVY 91

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F++AWL  CRRVLKP+G LWVIGSYHNI+R+G  LQ+L FWILNDIVWRK+NPMPNFR
Sbjct: 92  DDFSKAWLAECRRVLKPDGALWVIGSYHNIYRLGATLQDLGFWILNDIVWRKTNPMPNFR 151

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G RF NAHETLIWAS   KA+ Y FNY A+K  N+++QMRSDW  PICSG ERL++  G 
Sbjct: 152 GTRFTNAHETLIWASQGEKAR-YHFNYRAMKTLNDELQMRSDWTFPICSGGERLKDDAGH 210

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HPTQKPEALL R+L+++T+ GD++LDPFFG+GT+GA+AK+L R +IG E ++ Y  +A
Sbjct: 211 KAHPTQKPEALLYRVLLATTEWGDVVLDPFFGTGTTGAIAKRLGREWIGCEREESYRKVA 270

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
             RI    PL    LT +  KRT PRVAF  LVE G ++PG  + + Q   +ATV ADG+
Sbjct: 271 RARIEKELPLDESALTTMQSKRTAPRVAFGTLVEAGFVKPGTQVFDKQRRWTATVRADGS 330

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRIL 367
           L+     GSIH+VG  + G+ +CNGW FW+FE  G + +++  R L
Sbjct: 331 LVHEKLNGSIHQVGKDLQGAPSCNGWTFWHFEDEGAVKALDAARQL 376


>gi|170739049|ref|YP_001767704.1| DNA methylase N-4/N-6 domain-containing protein [Methylobacterium
           sp. 4-46]
 gi|168193323|gb|ACA15270.1| DNA methylase N-4/N-6 domain protein [Methylobacterium sp. 4-46]
          Length = 396

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 217/353 (61%), Positives = 266/353 (75%), Gaps = 2/353 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN-GQLYRPDHSLVDAVTDSWDKFSSFE 79
           D++I+G+ ++ L+ LP  SVDL+FADPPYNLQL    L RPD S VDAV D WD+F+SFE
Sbjct: 41  DEVIQGDCLAALDALPPSSVDLVFADPPYNLQLGEAALLRPDQSAVDAVDDDWDQFASFE 100

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYDAFTR WL ACRRV+KPN TLWVIGSYHNIFR+G+ LQ+L FWILNDIVWRK+NPMPN
Sbjct: 101 AYDAFTRQWLQACRRVMKPNATLWVIGSYHNIFRVGSALQDLGFWILNDIVWRKANPMPN 160

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+RF NAHETLIWAS S + KGYTF+Y++LK  N+D+QMRSDW +P+C+G ERL+ +D
Sbjct: 161 FRGKRFTNAHETLIWASRSAQ-KGYTFHYESLKGGNDDLQMRSDWFLPLCTGEERLKGED 219

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G KLHPTQKPEALL+R ++S++ PGD++LDPFFG+GT+GAVAK+L R FIGIE +  Y  
Sbjct: 220 GRKLHPTQKPEALLARTILSASNPGDVVLDPFFGTGTTGAVAKRLGRRFIGIERESAYAA 279

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A  RIA+V+PL    L     KR EPRV F  L+E GLI PG  LT+ +    A V  D
Sbjct: 280 AARARIAAVEPLSTAALLTAPAKRAEPRVPFLNLIEAGLIAPGSQLTDERRRFRALVRPD 339

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           GTL  G   GSIH++GA V G   CNGW FW+ E+ G L  I+ LR  +R  L
Sbjct: 340 GTLSVGPACGSIHKIGALVQGLPACNGWTFWHTERGGRLVVIDALRAQIRAGL 392


>gi|170747153|ref|YP_001753413.1| DNA methylase N-4/N-6 domain-containing protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653675|gb|ACB22730.1| DNA methylase N-4/N-6 domain protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 368

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 212/355 (59%), Positives = 271/355 (76%), Gaps = 1/355 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL-NGQLYRPDHSLVDAVTDSWDKFSSFE 79
           D+++ G+ I+ +  LPA SVD +FADPPYNLQL +  L RPD S VDAV D WDKF++FE
Sbjct: 13  DQVLVGDCIAAMNALPASSVDCVFADPPYNLQLGDAGLLRPDQSRVDAVDDDWDKFATFE 72

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FTR WL ACRRV+KPN TLWVIGSYHNIFR+G+ LQ+L +WILNDIVWRK+NPMPN
Sbjct: 73  AYDTFTRDWLSACRRVMKPNATLWVIGSYHNIFRVGSALQDLGYWILNDIVWRKANPMPN 132

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+RF NAHETLIWAS S  +KGYTF+Y+ALK  NED+QMRSDW IP+C+G ERL++ +
Sbjct: 133 FRGKRFTNAHETLIWASRSADSKGYTFHYEALKGGNEDLQMRSDWFIPLCTGEERLKDAE 192

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K+HPTQKPEALL+R L+++T PGD++LDPFFG+GT+GAVAK+L R FIGIE +  Y +
Sbjct: 193 GRKVHPTQKPEALLARTLLAATNPGDVVLDPFFGTGTTGAVAKRLGRRFIGIEREATYAE 252

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A +RIA+V+ L    L V   KR EPRV F  ++E G I+PG+ +T+ +    ATV  D
Sbjct: 253 AARERIAAVETLSRAALMVAPTKRAEPRVPFLSVIEAGHIRPGETVTDERRRFRATVRPD 312

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           G L +G  +GSIH++GA V G   CNGW FW+ E+ G+   I+T R  +R+ + N
Sbjct: 313 GQLDNGLVIGSIHKIGALVQGLPACNGWTFWHVERGGKPVVIDTFRAGLRQAMAN 367


>gi|288962308|ref|YP_003452603.1| adenine-specific DNA-methyltransferase [Azospirillum sp. B510]
 gi|288914574|dbj|BAI76059.1| adenine-specific DNA-methyltransferase [Azospirillum sp. B510]
          Length = 360

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 203/358 (56%), Positives = 268/358 (74%), Gaps = 5/358 (1%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +++I+ G+ I+++  LP  SVDL+FADPPYNLQL G+L RP+H+ V  V D WDKF  FE
Sbjct: 4   ENRILVGDCIALMNDLPPASVDLVFADPPYNLQLGGELLRPNHTRVAGVDDEWDKFDDFE 63

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FTR W+ A RR+LKP G+LWVIGSYHNIFR+G  LQNL FWILNDIVWRK+NPMPN
Sbjct: 64  AYDRFTRDWMTAARRILKPEGSLWVIGSYHNIFRVGATLQNLGFWILNDIVWRKTNPMPN 123

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG RF NAHET+IWA+    A+ Y FNYDA+K  NED+QMRSDWL+PICSG ERLR+++
Sbjct: 124 FRGTRFANAHETMIWAALDKDAR-YRFNYDAMKNLNEDLQMRSDWLLPICSGGERLRDEE 182

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKPE+LL R+++SS++PGD++LDPFFG+GT+GAVAK+L R +IG+E    Y+ 
Sbjct: 183 GKKTHPTQKPESLLYRVILSSSRPGDVVLDPFFGTGTTGAVAKRLGRKWIGLERDDTYVK 242

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A  RI +V+   +  +     KR+ PR+ F  +VERGL++PG  L + +  ++A V AD
Sbjct: 243 AAQARIDAVEEAPDTAILDTPPKRSAPRIPFGWVVERGLLRPGSTLFDQRRRVAARVRAD 302

Query: 320 GTLIS----GTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           GTLI     G   GSIH+VGA ++G   CNGW FW++E+  +L  I+ LR  +R E++
Sbjct: 303 GTLIGSGPRGDHRGSIHQVGAAMAGLPACNGWTFWHYEEGEDLRPIDVLRERIRSEMH 360


>gi|332188931|ref|ZP_08390632.1| DNA methylase family protein [Sphingomonas sp. S17]
 gi|332011042|gb|EGI53146.1| DNA methylase family protein [Sphingomonas sp. S17]
          Length = 379

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 209/346 (60%), Positives = 260/346 (75%), Gaps = 3/346 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+I+ G+ I+ L  LP KSVD++FADPPYNLQL G+L+RPD S VDAVTD+WDKF +F A
Sbjct: 27  DQILMGDCIAALRSLPDKSVDMVFADPPYNLQLGGELFRPDGSHVDAVTDAWDKFDTFAA 86

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YDAFTRAWL  C RVLK NG+LWVIGSYHNIFR+GT +Q+L FWILNDI+WRKSNPMPNF
Sbjct: 87  YDAFTRAWLAECYRVLKDNGSLWVIGSYHNIFRVGTAVQDLGFWILNDIIWRKSNPMPNF 146

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWAS   KAK YTFNY ++K  N+++QMRSDW  PIC G ERL+ KDG
Sbjct: 147 KGTRFTNAHETLIWASKGEKAK-YTFNYRSMKTLNDEIQMRSDWEFPICGGQERLK-KDG 204

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K+HPTQKPEALL RIL++ T+PGD+I DPFFG+GT+GAVAK+L R +IGIE +  Y   
Sbjct: 205 HKVHPTQKPEALLYRILLACTRPGDVIADPFFGTGTTGAVAKRLGRRWIGIEREPTYCAA 264

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A +RI +  PL    L  +   + +P+VAF  LVE G + PG  L +A+    ATV ADG
Sbjct: 265 AIERIEAALPLDESALATMQSPKAQPKVAFGTLVETGYLAPGMPLMDAKRKWRATVRADG 324

Query: 321 TLISGT-ELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLR 365
           +L+S   + GSIHR+G+ +    TCNGW FW++E  G L  I+ +R
Sbjct: 325 SLLSDCGQAGSIHRLGSLLQNRPTCNGWTFWHYELEGALKPIDAMR 370


>gi|296444555|ref|ZP_06886519.1| DNA methylase N-4/N-6 domain protein [Methylosinus trichosporium
           OB3b]
 gi|296257823|gb|EFH04886.1| DNA methylase N-4/N-6 domain protein [Methylosinus trichosporium
           OB3b]
          Length = 390

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 201/349 (57%), Positives = 260/349 (74%), Gaps = 1/349 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           ++ ++ G+++ ++  LPA+SVDL+FADPPYNLQL   L RPD S VDAV D WDKF+ F 
Sbjct: 32  RNSVLLGDNVPLMAGLPAESVDLVFADPPYNLQLANALTRPDQSRVDAVDDDWDKFADFS 91

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD+FTR WL A RRV+KPN T++VIGSYHNIFR+G M+Q+L FWILNDIVWRK+NPMPN
Sbjct: 92  AYDSFTRDWLAAARRVMKPNATIFVIGSYHNIFRVGAMMQDLGFWILNDIVWRKTNPMPN 151

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRGRRF NAHETLIWA+     + YTF+Y+ALKA NED QMRSDWL+PIC+G ERL++  
Sbjct: 152 FRGRRFTNAHETLIWAARDSSCRSYTFHYEALKAGNEDCQMRSDWLLPICTGGERLKDAA 211

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K HPTQKPEALL+R++++++ PGD++LDPFFGSGT+GAVAK+L R ++G+E    Y  
Sbjct: 212 GRKTHPTQKPEALLARVMLAASNPGDLVLDPFFGSGTTGAVAKRLGRDYLGLERDPAYAA 271

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A +RIA+++PL +  +     KR+ PR+AF  LVE GL+  G +LT+  G   A V  D
Sbjct: 272 AARERIAAIEPLPDEAIAAAPTKRSAPRIAFASLVESGLVAAGAMLTDLHGRHRAMVRPD 331

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEK-LGELHSINTLRIL 367
           G L  G  +GSIH++GA   G   CNGW FW+FE   G L  I+ LR +
Sbjct: 332 GALALGQIVGSIHKIGALAQGLPACNGWTFWHFESGGGALAPIDDLRTI 380


>gi|83313087|ref|YP_423351.1| modification methylase CcrMI [Magnetospirillum magneticum AMB-1]
 gi|82947928|dbj|BAE52792.1| Modification methylase CcrmI [Magnetospirillum magneticum AMB-1]
          Length = 358

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/353 (58%), Positives = 264/353 (74%), Gaps = 4/353 (1%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I+ G+ I+++  LPA SVDLIFADPPYNLQL G+L RP++S V+ V + WD+FS F AYD
Sbjct: 8   ILSGDCIAMMNSLPAGSVDLIFADPPYNLQLGGELLRPNNSKVEGVDEEWDRFSDFAAYD 67

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           +FTR WL A RRVLK +G LWVIGSYHNIFR+G++LQ+L FW+LNDIVWRKSNPMPNF+G
Sbjct: 68  SFTRDWLKAARRVLKDDGGLWVIGSYHNIFRVGSILQDLGFWMLNDIVWRKSNPMPNFKG 127

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
            RF NAHET+IW + S  ++ YTFNYD +KA N+D+QMRSDW +P+C+G ERLRN  G K
Sbjct: 128 TRFTNAHETMIWCAKSSDSR-YTFNYDTMKALNDDLQMRSDWTLPLCTGGERLRNA-GRK 185

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE+LL R++++STKPGD++LDPFFG+GT+GAVAKKL R+FIG E   +YI  A 
Sbjct: 186 THPTQKPESLLYRVIMASTKPGDVVLDPFFGTGTTGAVAKKLGRNFIGCERDPEYIAAAK 245

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL-TNAQGNISATVCADGT 321
            RIA V P+ +  L +   KR EPRV F  ++ERGL+  G +L    + +  A V ADGT
Sbjct: 246 DRIAKVIPVADPSLLLTPSKRAEPRVPFGTVLERGLLTAGDLLFGGTRHDKVAKVRADGT 305

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGE-LHSINTLRILVRKELY 373
           LI+    GSIH+VGA V G+  CNGW +W+F+   E    I+ LR  +R EL+
Sbjct: 306 LITDDHRGSIHKVGALVQGAPACNGWTYWHFQASSEDFLPIDVLRQKIRAELH 358


>gi|103486455|ref|YP_616016.1| DNA methylase N-4/N-6 [Sphingopyxis alaskensis RB2256]
 gi|98976532|gb|ABF52683.1| DNA methylase N-4/N-6 [Sphingopyxis alaskensis RB2256]
          Length = 379

 Score =  428 bits (1100), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 204/346 (58%), Positives = 251/346 (72%), Gaps = 3/346 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I++G+ ++++  LPA SVD+IFADPPYNLQL G L RPD S VDAV D WDKF S   
Sbjct: 27  DSILQGDCVAMMRGLPAASVDMIFADPPYNLQLGGDLLRPDGSQVDAVDDDWDKFDSLAT 86

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FT AWL   RR+LKP G++WVIGSYHNIFR+G  LQ+  +WILNDIVWRK+NPMPNF
Sbjct: 87  YDRFTHAWLKEARRILKPGGSIWVIGSYHNIFRVGAALQDQGYWILNDIVWRKANPMPNF 146

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWAS   KA+ YTFNY A+K  N+++QMRSDWLIPIC G ERL+ K G
Sbjct: 147 KGTRFTNAHETLIWASMGEKAR-YTFNYRAMKTLNDELQMRSDWLIPICGGPERLK-KGG 204

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K+HPTQKPEALL RIL++ + PGD+ILDPFFG+GT+GAVAK+L R +IGIE + DYI  
Sbjct: 205 HKVHPTQKPEALLYRILLACSNPGDVILDPFFGTGTTGAVAKRLGRHYIGIEREDDYIAA 264

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A +RI    PL    +  +   +   RVAF  LVE GLI PG +LT+A+    A V  DG
Sbjct: 265 AKERIELALPLDESAVKTMMAPKAATRVAFGTLVECGLIAPGTVLTDAKRRWKAKVRVDG 324

Query: 321 TL-ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLR 365
           +L   G   GSIH+VGA V G+ +CNGW FW+ +   EL  I+ +R
Sbjct: 325 SLDCEGQAPGSIHKVGAGVQGAPSCNGWTFWHVDTGQELRVIDAVR 370


>gi|296536588|ref|ZP_06898668.1| site-specific DNA-methyltransferase (adenine-specific) [Roseomonas
           cervicalis ATCC 49957]
 gi|296263084|gb|EFH09629.1| site-specific DNA-methyltransferase (adenine-specific) [Roseomonas
           cervicalis ATCC 49957]
          Length = 363

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 199/346 (57%), Positives = 254/346 (73%), Gaps = 2/346 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I++G+ I +L  LP  SV  IFADPPYNLQL G+L RPD S+VD V D+WD+FS    
Sbjct: 10  DCILEGDCIEMLRALPPASVHAIFADPPYNLQLKGELRRPDESVVDGVDDAWDRFSDLAT 69

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD+FTRAWL   RRVL+ +GT+WVIGSYHN+FR+G  LQ+L+FWILND++WRK+NPMPNF
Sbjct: 70  YDSFTRAWLTEARRVLRKDGTIWVIGSYHNVFRLGVALQDLDFWILNDVIWRKANPMPNF 129

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RGRRF NAHETLIWAS   +++ Y FNY A+K+ N+DVQMRSDW IP+C+GSERLR++ G
Sbjct: 130 RGRRFTNAHETLIWASRGQESR-YKFNYTAMKSLNDDVQMRSDWFIPLCTGSERLRDEKG 188

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K+HPTQKPEALL R+++S T PGD++LDPF GSGT+ AVA++L R +IGIE    Y   
Sbjct: 189 QKVHPTQKPEALLHRVILSCTSPGDVVLDPFLGSGTTAAVARRLGRRYIGIERDPTYAAA 248

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  RI +V+PL    + V   KR +PR+ F  LVERGL+ PG  L +      A V ADG
Sbjct: 249 ARARIQAVEPLSESAMLVTPTKREQPRIPFGALVERGLVPPGARLVDRHRRFVAEVGADG 308

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKL-GELHSINTLR 365
           +L  G   GSIH+VGA V  + +CNGW FW+ E+  G L  ++ LR
Sbjct: 309 SLRCGKAQGSIHQVGAAVQEAPSCNGWLFWHVERRDGTLRLLDELR 354


>gi|149185912|ref|ZP_01864227.1| modification methylase [Erythrobacter sp. SD-21]
 gi|148830473|gb|EDL48909.1| modification methylase [Erythrobacter sp. SD-21]
          Length = 380

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 197/346 (56%), Positives = 257/346 (74%), Gaps = 2/346 (0%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I+ G+ +  + ++P+ S+DL+FADPPYNLQL G L RPD S VDAVTD WDKF +F AY
Sbjct: 30  QILDGDCVEAMRQIPSASIDLVFADPPYNLQLGGDLNRPDGSHVDAVTDDWDKFDTFSAY 89

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTR WL+  +R+LKP+G LWVIGSYHNI+R+G +LQ+L FWILNDIVWRKSNPMPNFR
Sbjct: 90  DTFTRDWLIEAKRILKPDGALWVIGSYHNIYRVGAILQDLGFWILNDIVWRKSNPMPNFR 149

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G RF NAHETL+W S   KAK Y FNY A+K  N+++QMRSDW++PIC+G+ERL+ + G 
Sbjct: 150 GTRFTNAHETLLWCSQGEKAK-YHFNYRAMKTLNDELQMRSDWVLPICNGAERLK-EGGH 207

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+HPTQKPEALL R+L+S+T+ GD++LDPFFG+GT+GAVAK+L R +IG E +  Y + A
Sbjct: 208 KVHPTQKPEALLYRVLLSTTERGDVVLDPFFGTGTTGAVAKRLGREWIGCEREGVYRNAA 267

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
            KRI    PL    LT +   R+ P+VAF  LVE G I PG  L + +   +ATV ADG+
Sbjct: 268 LKRIEKELPLDESALTTMQAGRSAPKVAFGALVENGYIAPGTKLFDKKRRWTATVRADGS 327

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRIL 367
           L    + GSIH +G ++ G+ +CNGW FW++E  GE+  I+  R L
Sbjct: 328 LACEKQTGSIHGLGKELQGAPSCNGWTFWHYENGGEVKPIDAARQL 373


>gi|294085234|ref|YP_003551994.1| DNA methylase N-4/N-6 [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664809|gb|ADE39910.1| DNA methylase N-4/N-6 [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 363

 Score =  424 bits (1091), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 195/351 (55%), Positives = 267/351 (76%), Gaps = 3/351 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K+ +++G+ +  L+ L   SVDL+FADPPYNLQL+  L RPD S V +V DSWD+F SF 
Sbjct: 3   KNIVLQGDCVETLKTLAKNSVDLVFADPPYNLQLSELLVRPDQSSVVSVDDSWDQFDSFA 62

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FT AW+   RRVLKPNG +WVIGSYHNIFR+G ++Q+L FW+LND++WRK+NPMPN
Sbjct: 63  AYDEFTLAWMREVRRVLKPNGAIWVIGSYHNIFRVGKIMQDLGFWVLNDVIWRKTNPMPN 122

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRGRRF NAHET+IWA+ S KAK +TFNY+A+KA N+DVQMRSDW +P+C+G ERL+ ++
Sbjct: 123 FRGRRFTNAHETMIWAAKSQKAK-HTFNYEAMKALNDDVQMRSDWELPLCTGHERLK-EN 180

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G++ HPTQKPE+LL+R++++STK  D+ILDPFFG+GT+GAVA++L R+FIGIE   DY+ 
Sbjct: 181 GKRAHPTQKPESLLARVILASTKRDDVILDPFFGTGTTGAVARRLNRNFIGIEQNPDYVK 240

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A  RI  V P+ + +L     KR  P++ F  L+ERG++QPG  L +A+   SA V AD
Sbjct: 241 LARDRIDQVTPIASPDLLASEQKRALPKIPFGTLIERGILQPGDRLFDAKKRFSAQVRAD 300

Query: 320 GTLISGT-ELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVR 369
           G+L++ + E GSIH +GA++    +CNGW FW+ E+ G+   I+  R  +R
Sbjct: 301 GSLVTDSKESGSIHSLGAQLQSLPSCNGWIFWHVERDGKPVLIDRFREDIR 351


>gi|85707872|ref|ZP_01038938.1| Site-specific DNA-methyltransferase [Erythrobacter sp. NAP1]
 gi|85689406|gb|EAQ29409.1| Site-specific DNA-methyltransferase [Erythrobacter sp. NAP1]
          Length = 379

 Score =  424 bits (1091), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 200/348 (57%), Positives = 256/348 (73%), Gaps = 2/348 (0%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I+ G+ I  +  LP  SVD +FADPPYNLQL G L RPD S VDAVTD WD+F SF AY
Sbjct: 29  QILDGDCIEAMRSLPDNSVDCVFADPPYNLQLGGDLNRPDGSEVDAVTDHWDQFDSFRAY 88

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTR WL   RRVLKP+G+LWVIGSYHNIFR G +LQ+L FWILNDIVWRK+NPMPNF+
Sbjct: 89  DDFTREWLTEARRVLKPDGSLWVIGSYHNIFRCGAILQDLGFWILNDIVWRKTNPMPNFK 148

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G RF NAHETLIWAS   KA+ Y FNY A+K  N+++QMRSDW++PICSG ERL+ ++G+
Sbjct: 149 GTRFTNAHETLIWASQGEKAR-YHFNYRAMKTLNDELQMRSDWVLPICSGGERLK-ENGK 206

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HPTQKPEALL R+L+++T+ GD++LDPFFG+GT+GAVAK+L R +IG E ++ Y  +A
Sbjct: 207 KAHPTQKPEALLYRVLLATTEKGDVVLDPFFGTGTTGAVAKRLGREWIGCEREEFYRGVA 266

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
            KRI    PL    LT +  K+  PRVAF  +VE GLI PG  + + +    ATV ADG+
Sbjct: 267 MKRIEKELPLDESALTTMQSKKAAPRVAFGAVVENGLIPPGTQVFDKKRRWVATVRADGS 326

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVR 369
           L    ++GSIH +G ++  + +CNGW FW++E  GE+  ++  R L R
Sbjct: 327 LDCDGKVGSIHGLGKELQEAPSCNGWTFWHYENGGEIKPVDAARELYR 374


>gi|240139930|ref|YP_002964407.1| site-specific DNA-methyltransferase (adenine-specific)
           [Methylobacterium extorquens AM1]
 gi|240009904|gb|ACS41130.1| site-specific DNA-methyltransferase (adenine-specific)
           [Methylobacterium extorquens AM1]
          Length = 398

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/352 (61%), Positives = 270/352 (76%), Gaps = 2/352 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN-GQLYRPDHSLVDAVTDSWDKFSSFE 79
           D+I+ G+ I+ +++LPA+SVD +FADPPYNLQL    L RPD S+VDAV D WDKFSSF 
Sbjct: 45  DEILIGDCIAAMDRLPAESVDCVFADPPYNLQLGEAGLTRPDQSVVDAVDDDWDKFSSFS 104

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FTRAWL A RRV+KPNGTLWVIGSYHNIFR+G+ LQ+L +WILNDIVWRK+NPMPN
Sbjct: 105 AYDDFTRAWLKAARRVMKPNGTLWVIGSYHNIFRVGSALQDLGYWILNDIVWRKANPMPN 164

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+RF NAHETLIWAS SP+AK YTF+YDALKA NED+QMRSDW IP+C+G ERL+++ 
Sbjct: 165 FRGKRFTNAHETLIWASRSPQAK-YTFHYDALKAGNEDLQMRSDWFIPLCTGEERLKDEA 223

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K+HPTQKPEALL+R L+++T PGD++LDPFFG+GT+GAVAK+L R FIG E    Y  
Sbjct: 224 GRKVHPTQKPEALLARTLLAATNPGDVVLDPFFGTGTTGAVAKRLGRHFIGCERDPTYAT 283

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A  RI S++ L    L + T KR+EPR+ F  +VE G ++PG+ LT+ +    ATV  D
Sbjct: 284 AARARIDSIETLSAASLALATPKRSEPRIPFLSVVEAGHVRPGETLTDERRRFRATVRPD 343

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           G L  G  +GSIH+VGA V G   CNGW FW+ E+ G+L  I+  R  +R +
Sbjct: 344 GQLSVGPAMGSIHKVGALVQGLPACNGWTFWHAERGGKLVCIDDFRTEMRGQ 395


>gi|260752543|ref|YP_003225436.1| DNA methylase N-4/N-6 domain protein [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|283856387|ref|YP_162740.2| DNA methylase N-4/N-6 domain-containing protein [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|163881967|gb|ABY48039.1| cell cycle regulating DNA methyltransferase [Zymomonas mobilis
           subsp. mobilis]
 gi|258551906|gb|ACV74852.1| DNA methylase N-4/N-6 domain protein [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|283775386|gb|AAV89629.2| DNA methylase N-4/N-6 domain protein [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 382

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 198/346 (57%), Positives = 257/346 (74%), Gaps = 2/346 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I+ GN I +L+ LP  SVDLIFADPPYNLQL+G+L+RP+ S VDAV ++WDKF +F A
Sbjct: 30  NSILAGNCIEILKTLPDNSVDLIFADPPYNLQLSGELFRPEGSRVDAVNNAWDKFDTFAA 89

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL    RVLK +GT+WVIGSYHNIFR+GT LQ+  FWILNDI+WRKSNPMPNF
Sbjct: 90  YDHFTRLWLKEAHRVLKEDGTIWVIGSYHNIFRVGTALQDQGFWILNDIIWRKSNPMPNF 149

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +GRRF NAHETLIWAS S K++ Y FNY +LK  N+D+QMRSDWL+PICSG+ERL+ ++G
Sbjct: 150 KGRRFTNAHETLIWASKSDKSR-YVFNYASLKTFNDDLQMRSDWLLPICSGNERLKGENG 208

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K+HPTQKPEALL RI+++S++P D+ILDPFFG+GT+G +A+ LRR +IGIE    YI  
Sbjct: 209 QKIHPTQKPEALLYRIILASSRPDDVILDPFFGTGTTGVIARHLRRHWIGIEQDPTYIKA 268

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  RI   +      +   + KR +PRV F  L+E G I+PG IL +++    A V  DG
Sbjct: 269 AQARIDKAEVFDEALMGQASNKRKQPRVTFGCLMENGFIRPGHILYDSRRRFKAVVNVDG 328

Query: 321 TLISGT-ELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLR 365
            L S     GSIH++GA++  + +CNGW FW+FE+   L  ++ LR
Sbjct: 329 ALQSADGRSGSIHKLGAQLQQAVSCNGWIFWHFEENNILLPLDILR 374


>gi|85373286|ref|YP_457348.1| modification methylase [Erythrobacter litoralis HTCC2594]
 gi|84786369|gb|ABC62551.1| modification methylase [Erythrobacter litoralis HTCC2594]
          Length = 380

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 195/346 (56%), Positives = 253/346 (73%), Gaps = 2/346 (0%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I+ G+ +  +  LP  SVDL+FADPPYNLQL G L RPD S VDAVTD WD+F SF  Y
Sbjct: 30  QILSGDCVEAMRSLPDASVDLVFADPPYNLQLGGDLNRPDGSHVDAVTDHWDQFDSFAIY 89

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTR WL   +R+LKP+G LWVIGSYHNI+R+G +LQ+L FWILNDIVWRK+NPMPNFR
Sbjct: 90  DQFTREWLTEAKRILKPDGALWVIGSYHNIYRVGAILQDLGFWILNDIVWRKTNPMPNFR 149

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G RF NAHETL+WAS   KAK Y FNY A+K  N+++QMRSDW+IPIC+G+ERL+ ++G 
Sbjct: 150 GTRFTNAHETLLWASQGEKAK-YHFNYTAMKTLNDELQMRSDWVIPICNGAERLK-ENGT 207

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HPTQKPEALL R+L+++T+ GD+++DPFFG+GT+GAVAK+L R +IG E +  Y  +A
Sbjct: 208 KAHPTQKPEALLYRVLLATTEKGDVVVDPFFGTGTTGAVAKRLGREWIGCEREDVYRGVA 267

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
            KRI    PL    L V+  KR  P+VAF  LVE G ++PG  + + +    ATV ADG+
Sbjct: 268 MKRIEKELPLDESALKVMQSKRAAPKVAFGALVEAGFLKPGTEVFDTKRRWVATVRADGS 327

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRIL 367
           L  G + GSIH +G ++ G+ +CNGW FW++E  G    ++  R L
Sbjct: 328 LECGKQTGSIHGLGKELQGAPSCNGWTFWHYEDEGVAKPLDAARQL 373


>gi|163852596|ref|YP_001640639.1| DNA methylase N-4/N-6 domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|163664201|gb|ABY31568.1| DNA methylase N-4/N-6 domain protein [Methylobacterium extorquens
           PA1]
          Length = 398

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/352 (61%), Positives = 268/352 (76%), Gaps = 2/352 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN-GQLYRPDHSLVDAVTDSWDKFSSFE 79
           D+I+ G+ I+ +++LPA+SVD +FADPPYNLQL    L RPD S+VDAV D WDKFSSF 
Sbjct: 45  DEILIGDCIAAMDRLPAESVDCVFADPPYNLQLGEAGLTRPDQSVVDAVDDDWDKFSSFS 104

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FTRAWL A RRV+KPN TLWVIGSYHNIFR+G+ LQ+L +WILNDIVWRK+NPMPN
Sbjct: 105 AYDDFTRAWLKAARRVMKPNATLWVIGSYHNIFRVGSALQDLGYWILNDIVWRKANPMPN 164

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+RF NAHETLIWAS SP+AK YTF+YDALKA NED+QMRSDW IP+C+G ERL+++ 
Sbjct: 165 FRGKRFTNAHETLIWASRSPQAK-YTFHYDALKAGNEDLQMRSDWFIPLCTGEERLKDEA 223

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K+HPTQKPEALL+R L+++T PGD++LDPFFG+GT+GAVAK+L R FIG E    Y  
Sbjct: 224 GRKVHPTQKPEALLARTLLAATNPGDVVLDPFFGTGTTGAVAKRLGRHFIGCERDPTYAT 283

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A  RI S++ L    L + T KR EPR+ F  +VE G ++PG+ LT+ +    ATV  D
Sbjct: 284 AARARIDSIETLSAASLALATPKRAEPRIPFLSVVEAGHVRPGETLTDERRRFRATVRPD 343

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           G L  G  +GSIH+VGA V G   CNGW FW+ E+ G+L  I+  R  +R +
Sbjct: 344 GQLSVGPAMGSIHKVGALVQGLPACNGWTFWHAERGGKLVCIDDFRTEMRGQ 395


>gi|148292196|dbj|BAF62911.1| putative adenine DNA methyltransferase [uncultured bacterium]
          Length = 358

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/354 (59%), Positives = 264/354 (74%), Gaps = 2/354 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           KD II GN +  L  LP  SVDL+FADPPYNLQL+G L RPD S+VDAV D WDKF SF 
Sbjct: 3   KDVIICGNCVDQLAGLPDNSVDLVFADPPYNLQLSGNLTRPDQSVVDAVDDDWDKFDSFA 62

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD  + AWL  CRRVLK +G LWVIGSYHNIFR+G +LQ+L +WILND+VWRKSNPMPN
Sbjct: 63  AYDQLSEAWLRECRRVLKDDGALWVIGSYHNIFRLGRLLQDLGYWILNDVVWRKSNPMPN 122

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRGRRF NAHETLIWA+ S  +K YTFNYDA+KA NE VQMRSDW +PIC+G+ERL+++ 
Sbjct: 123 FRGRRFTNAHETLIWAAKSEASK-YTFNYDAMKALNEGVQMRSDWYMPICTGAERLKDQA 181

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKPE LL+R+++SSTK GD ILDPFFG+GT+GAVA++L R +IGIE  +DY  
Sbjct: 182 GQKAHPTQKPENLLARVILSSTKRGDTILDPFFGTGTTGAVARRLGRHYIGIEQNEDYAK 241

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A +RIA+VQP+ +  +     KR +PRV F  LVE G +  G  L +   ++ A VCAD
Sbjct: 242 LAAERIAAVQPIVDDVILSTPEKRAQPRVPFGALVEGGWLAAGDTLFDKTKSVRARVCAD 301

Query: 320 GTLISG-TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           G+L++   + GSIH +GA +    +CNGW +W+  + G+  SI+ LR   RK +
Sbjct: 302 GSLVTDKAQKGSIHGLGATLQNQPSCNGWQYWHVTRDGKDVSIDLLRAEYRKSM 355


>gi|218531437|ref|YP_002422253.1| DNA methylase N-4/N-6 domain protein [Methylobacterium
           chloromethanicum CM4]
 gi|218523740|gb|ACK84325.1| DNA methylase N-4/N-6 domain protein [Methylobacterium
           chloromethanicum CM4]
          Length = 398

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/352 (60%), Positives = 268/352 (76%), Gaps = 2/352 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN-GQLYRPDHSLVDAVTDSWDKFSSFE 79
           D+I+ G+ I+ +++LPA+SVD +FADPPYNLQL    L RPD S+VDAV D WDKFSSF 
Sbjct: 45  DEILIGDCIAAMDRLPAESVDCVFADPPYNLQLGEAGLTRPDQSVVDAVDDDWDKFSSFS 104

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FTRAWL A RRV+KPN TLWVIGSYHNIFR+G+ LQ+L +WILNDIVWRK+NPMPN
Sbjct: 105 AYDDFTRAWLKAARRVMKPNATLWVIGSYHNIFRVGSALQDLGYWILNDIVWRKANPMPN 164

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+RF NAHETLIWAS SP+AK YTF+YDALKA NED+QMRSDW IP+C+G ERL+++ 
Sbjct: 165 FRGKRFTNAHETLIWASRSPQAK-YTFHYDALKAGNEDLQMRSDWFIPLCTGEERLKDEA 223

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K+HPTQKPEALL+R L+++T PGD++LDPFFG+GT+GAVAK+L R FIG E    Y  
Sbjct: 224 GRKVHPTQKPEALLARTLLAATNPGDVVLDPFFGTGTTGAVAKRLGRHFIGCERDPTYAT 283

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A  RI  ++ L    L + T KR+EPR+ F  +VE G ++PG+ LT+ +    ATV  D
Sbjct: 284 AARARIDGIETLSAASLALATPKRSEPRIPFLSVVEAGHVRPGETLTDERRRFRATVRPD 343

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           G L  G  +GSIH+VGA V G   CNGW FW+ E+ G+L  I+  R  +R +
Sbjct: 344 GQLSVGPAMGSIHKVGALVQGLPACNGWTFWHAERSGKLVCIDDFRTEMRGQ 395


>gi|241761782|ref|ZP_04759868.1| DNA methylase N-4/N-6 domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241373696|gb|EER63256.1| DNA methylase N-4/N-6 domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 382

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 197/346 (56%), Positives = 256/346 (73%), Gaps = 2/346 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I+ GN I +L+ LP  SVDLIFADPPYNLQL+G+L+RP+ S VDAV ++WDKF +F A
Sbjct: 30  NSILAGNCIEILKTLPDNSVDLIFADPPYNLQLSGELFRPEGSRVDAVNNAWDKFDTFAA 89

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FT  WL    RVLK +GT+WVIGSYHNIFR+GT LQ+  FWILNDI+WRKSNPMPNF
Sbjct: 90  YDHFTCLWLKEAHRVLKEDGTIWVIGSYHNIFRVGTALQDQGFWILNDIIWRKSNPMPNF 149

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +GRRF NAHETLIWAS S K++ Y FNY +LK  N+D+QMRSDWL+PICSG+ERL+ ++G
Sbjct: 150 KGRRFTNAHETLIWASKSDKSR-YVFNYASLKTFNDDLQMRSDWLLPICSGNERLKGENG 208

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K+HPTQKPEALL RI+++S++P D+ILDPFFG+GT+G +A+ LRR +IGIE    YI  
Sbjct: 209 QKIHPTQKPEALLYRIILASSRPDDVILDPFFGTGTTGVIARHLRRHWIGIEQDPTYIKA 268

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  RI   +      +   + KR +PRV F  L+E G I+PG IL +++    A V  DG
Sbjct: 269 AQARIDKAEVFDEALMGQASNKRKQPRVTFGCLMENGFIRPGHILYDSRRRFKAVVNVDG 328

Query: 321 TLISGT-ELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLR 365
            L S     GSIH++GA++  + +CNGW FW+FE+   L  ++ LR
Sbjct: 329 ALQSADGRSGSIHKLGAQLQQAVSCNGWIFWHFEENNILLPLDILR 374


>gi|254562354|ref|YP_003069449.1| site-specific DNA-methyltransferase [Methylobacterium extorquens
           DM4]
 gi|254269632|emb|CAX25603.1| site-specific DNA-methyltransferase (adenine-specific)
           [Methylobacterium extorquens DM4]
          Length = 398

 Score =  418 bits (1075), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/352 (60%), Positives = 267/352 (75%), Gaps = 2/352 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN-GQLYRPDHSLVDAVTDSWDKFSSFE 79
           D+I+ G+ I+ +++LPA+SVD +FADPPYNLQL    L RPD S+VDAV D WDKFSSF 
Sbjct: 45  DEILIGDCIAAMDRLPAESVDCVFADPPYNLQLGEAGLTRPDQSVVDAVDDDWDKFSSFS 104

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FTRAWL A RRV+KPN TLWVIGSYHNIFR+G+ LQ+L +WILNDIVWRK+NPMPN
Sbjct: 105 AYDDFTRAWLKAARRVMKPNATLWVIGSYHNIFRVGSALQDLGYWILNDIVWRKANPMPN 164

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+RF NAHETLIWAS SP+AK YTF+YDALKA NED+QMRSDW IP+C+G ERL+++ 
Sbjct: 165 FRGKRFTNAHETLIWASRSPQAK-YTFHYDALKAGNEDLQMRSDWFIPLCTGEERLKDEA 223

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K+HPTQKPEALL+R L+++T PGD++LDPFFG+GT+GAVAK+L R FIG E    Y  
Sbjct: 224 GRKVHPTQKPEALLARTLLAATNPGDVVLDPFFGTGTTGAVAKRLGRHFIGCERDPTYAT 283

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A  RI S++ L    L +   KR EPR+ F  +VE G ++PG+ LT+ +    ATV  D
Sbjct: 284 AARARIDSIETLSAASLALAMPKRAEPRIPFLSVVEAGHVRPGETLTDERRRFRATVRPD 343

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           G L  G  +GSIH+VGA V G   CNGW FW+ E+ G+L  I+  R  +R +
Sbjct: 344 GQLSVGPAMGSIHKVGALVQGLPACNGWTFWHAERGGKLVCIDDFRTEMRGQ 395


>gi|254456346|ref|ZP_05069775.1| site-specific DNA methyltransferase [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083348|gb|EDZ60774.1| site-specific DNA methyltransferase [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 356

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 192/348 (55%), Positives = 259/348 (74%), Gaps = 2/348 (0%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           ++K+KII G+S+  L+K+P+++ DL+FADPPYNLQL  +L RPD S V AV D WD+F +
Sbjct: 4   DFKNKIINGDSLEELKKIPSETFDLVFADPPYNLQLKNKLTRPDRSKVSAVDDKWDQFEN 63

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           F+ YD FT AWL  C+R+LK NG +WVIGSYHNIFR+GT +QNL FWILND++W K+NPM
Sbjct: 64  FKKYDEFTYAWLTECKRILKKNGAIWVIGSYHNIFRVGTTIQNLGFWILNDVIWNKNNPM 123

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PNFRG RF NAHETLIWAS S K+K YTFNY +LK  N+D+QMRS+W +PIC+G+ERL+ 
Sbjct: 124 PNFRGTRFTNAHETLIWASKSEKSK-YTFNYQSLKCLNDDLQMRSNWNLPICNGTERLK- 181

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K+G+K+H TQKPEALL RIL++S+   D+ILDPF GSGT+  VAKKL R+F GIE ++ Y
Sbjct: 182 KNGKKVHSTQKPEALLHRILLASSNKDDMILDPFLGSGTTATVAKKLGRNFYGIEKEKTY 241

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
              A KRI + +P  +  L  L   R++PR+ F  LVE G+I+PG  + + +  I+A + 
Sbjct: 242 FKAAEKRIKNAKPFEDNFLDTLKNNRSKPRIPFGSLVELGIIKPGTNIFDNKKKITARIM 301

Query: 318 ADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLR 365
           ADG++      GSIH+V A + G+E+CNGW +W+ +  G  + I+ LR
Sbjct: 302 ADGSIKHNQAEGSIHKVAATILGAESCNGWTYWHCDINGRTYPIDYLR 349


>gi|114798609|ref|YP_760602.1| modification methylase CcrM [Hyphomonas neptunium ATCC 15444]
 gi|114738783|gb|ABI76908.1| modification methylase CcrM [Hyphomonas neptunium ATCC 15444]
          Length = 360

 Score =  412 bits (1058), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 192/354 (54%), Positives = 254/354 (71%), Gaps = 2/354 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           ++ II+G+ I VL ++P KSVDL+FADPPYNLQL G L RPD S+VD V D WDKF+SF+
Sbjct: 5   RNTIIQGDCIEVLSRIPDKSVDLVFADPPYNLQLGGGLTRPDQSVVDGVDDEWDKFASFD 64

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YD FT  WL  CRRVLK +G +WVIGSYHNIFR+GT+LQ+  FWI ND++W KSNPMPN
Sbjct: 65  DYDLFTHQWLEECRRVLKDDGAIWVIGSYHNIFRVGTVLQDQGFWIQNDVIWLKSNPMPN 124

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           F+G RFQNAHETLIWA  S  ++  TFNYDALK  NED QMRSDW IP+C+G ERL+++ 
Sbjct: 125 FKGTRFQNAHETLIWAGKSKDSR-VTFNYDALKTFNEDKQMRSDWTIPLCTGGERLKDEA 183

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K HPTQKPE+LL R+L++++ P D++LDPF G+GT+ A A++L R FIGIE ++ Y  
Sbjct: 184 GRKAHPTQKPESLLHRVLLATSNPRDLVLDPFSGTGTTAAAARRLGRDFIGIEREEGYAR 243

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           ++  RI ++ PL    L     K++  RV F  L+E G ++PG  L +AQ    A +  D
Sbjct: 244 LSRARINAITPLEGEVLETERSKKSLARVPFGALIETGWLKPGDRLFSAQRRHQARIRVD 303

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFE-KLGELHSINTLRILVRKEL 372
           G+L +G   GSIHR+GA+V  +  CNGW +W++E    +L  I+ LR   R+E+
Sbjct: 304 GSLTTGAITGSIHRLGAQVQQAPACNGWTYWHYETDKRDLAPIDLLRRRYREEM 357


>gi|188582617|ref|YP_001926062.1| DNA methylase N-4/N-6 domain protein [Methylobacterium populi
           BJ001]
 gi|179346115|gb|ACB81527.1| DNA methylase N-4/N-6 domain protein [Methylobacterium populi
           BJ001]
          Length = 370

 Score =  411 bits (1056), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/350 (60%), Positives = 265/350 (75%), Gaps = 2/350 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN-GQLYRPDHSLVDAVTDSWDKFSSFE 79
           D+I+ G+ I+ +++LPA+SVD +FADPPYNLQL    L RPD S+VDAV D WDKFSSF 
Sbjct: 17  DEILIGDCIAAMDRLPAESVDCVFADPPYNLQLGEAGLTRPDQSVVDAVDDDWDKFSSFA 76

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FTRAWL A RRV+KPN TLWVIGSYHNIFR+G+ LQ+L +WILNDIVWRK+NPMPN
Sbjct: 77  AYDDFTRAWLKAARRVMKPNATLWVIGSYHNIFRVGSALQDLGYWILNDIVWRKANPMPN 136

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+RF NAHETLIWAS SP+AK YTF+YDALKA NED+QMRSDW IP+C+G ERL+++ 
Sbjct: 137 FRGKRFTNAHETLIWASRSPQAK-YTFHYDALKAGNEDLQMRSDWFIPLCTGEERLKDEA 195

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K+HPTQKPEALL+R L+++T PGD++LDPFFG+GT+GAVA++L R FIG E    Y  
Sbjct: 196 GRKVHPTQKPEALLARTLLAATNPGDVVLDPFFGTGTTGAVARRLGRHFIGCERDPTYAA 255

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A  RI  ++ L    L + T KR EPR+ F  +VE G ++ G+ LT+ +    ATV  D
Sbjct: 256 AARTRIDGIETLSAASLALATPKRAEPRIPFLSVVEAGHVRAGETLTDERRRFRATVRPD 315

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVR 369
           G L  G  +GSIH+VGA V G   CNGW FW+ E+ G+L  I+  R  +R
Sbjct: 316 GQLSVGPAMGSIHKVGALVQGLPACNGWTFWHAERGGKLICIDDYRSEMR 365


>gi|162149132|ref|YP_001603593.1| DNA methylase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209545124|ref|YP_002277353.1| DNA methylase N-4/N-6 domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787709|emb|CAP57305.1| putative DNA methylase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532801|gb|ACI52738.1| DNA methylase N-4/N-6 domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 370

 Score =  411 bits (1056), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/345 (57%), Positives = 257/345 (74%), Gaps = 1/345 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+I++G+ + +++ LP  S+D IFADPPYNLQL G+L RPD S+VD V D WDKFS    
Sbjct: 12  DQILRGDCVELMQTLPTGSIDCIFADPPYNLQLRGELRRPDDSVVDGVDDDWDKFSDLAE 71

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTRAWL   RR+L+ +GT+WVIGSYHNIFRIG +LQ+L FWILND++WRKSNPMPNF
Sbjct: 72  YDRFTRAWLGEARRLLRKDGTIWVIGSYHNIFRIGAILQDLGFWILNDVIWRKSNPMPNF 131

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RGRRF NAHETLIWA+    ++ Y FNY A+KA N+DVQMRSDW +P+C+G ERLRN  G
Sbjct: 132 RGRRFTNAHETLIWAARGADSR-YRFNYQAMKALNDDVQMRSDWYLPLCTGGERLRNSHG 190

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            KLHPTQKPE+LL R+LV+ST   DI+LDPF G+GT+ A+A++LRR FIGIE   DY + 
Sbjct: 191 LKLHPTQKPESLLHRVLVASTNVDDIVLDPFAGTGTTTAMARRLRRRFIGIERHPDYAEA 250

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  R    +P+    +     KR  PRV F  LVERGL+  G ++ +    +SATV  DG
Sbjct: 251 AIGRARRERPVPLDSVLTTPAKRETPRVPFGSLVERGLLPVGTVMYDRHQRVSATVAPDG 310

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLR 365
           TL+SGT+ GSIH++GA ++ + +CNGW FW+ ++ G++  ++TLR
Sbjct: 311 TLVSGTQRGSIHKLGALLTNAPSCNGWTFWHLQRDGQMIPLDTLR 355


>gi|71082817|ref|YP_265536.1| site-specific DNA methyltransferase [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71061930|gb|AAZ20933.1| site-specific DNA methyltransferase [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 356

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 191/347 (55%), Positives = 255/347 (73%), Gaps = 2/347 (0%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +K+KII G+S+  L+K+P+++ DL+FADPPYNLQL   L RPD S V+AV D WD F SF
Sbjct: 5   FKNKIINGDSLEELKKIPSETFDLVFADPPYNLQLKNSLTRPDRSKVNAVNDKWDHFESF 64

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           + YD FT AWL  C+R+LK +G +WVIGSYHNIFR+GT +QNL FWILND++W K+NPMP
Sbjct: 65  KKYDEFTVAWLSECKRILKKDGAIWVIGSYHNIFRVGTAIQNLGFWILNDVIWNKNNPMP 124

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRG RF NAHETLIWAS S K+K YTFNY +LK  N+D+QMRSDW +PIC+G+ERL+ K
Sbjct: 125 NFRGTRFTNAHETLIWASKSEKSK-YTFNYQSLKCLNDDLQMRSDWNLPICNGAERLK-K 182

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+K+H TQKPE+LL R+L++S+  GD+ILDPF GSGT+  VAKKL R + GIE ++ Y 
Sbjct: 183 NGKKVHSTQKPESLLHRVLLASSNKGDMILDPFLGSGTTATVAKKLGRKYYGIEKEKVYF 242

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
             A +R+ + +PL +  L  L   R++PR+ F  LVE G+I+PG  + + +  I A + A
Sbjct: 243 KAAEERLKNTKPLEDNFLDTLKNNRSKPRIPFGSLVELGIIKPGTSIFDQKKKIVAKIMA 302

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLR 365
           DG++      GSIH+V A + GSE+CNGW +W+    G    I+ LR
Sbjct: 303 DGSIKHNQAEGSIHKVAATILGSESCNGWTYWHCTVNGVSVPIDNLR 349


>gi|58038819|ref|YP_190783.1| adenine DNA methyltransferase [Gluconobacter oxydans 621H]
 gi|58001233|gb|AAW60127.1| Adenine DNA methyltransferase [Gluconobacter oxydans 621H]
          Length = 361

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/345 (56%), Positives = 256/345 (74%), Gaps = 1/345 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+I++G  I  ++ LP  SVD IFADPPYNLQL G+L RPD ++VD V D WDKF+ +  
Sbjct: 8   DQILRGECIETMKTLPDGSVDCIFADPPYNLQLRGELRRPDETVVDGVDDDWDKFADYAT 67

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL   RR+L  +GT+WVIGSYHN+FR+G ++Q+L FWILNDIVWRKSNPMPNF
Sbjct: 68  YDNFTREWLSEARRILHKDGTIWVIGSYHNVFRLGAIMQDLGFWILNDIVWRKSNPMPNF 127

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RGRRF NAHETLIWA+  P++K Y FNY A+KA N+D+QMRSDW +P+C+G+ERL+N+ G
Sbjct: 128 RGRRFTNAHETLIWAARGPQSK-YRFNYQAMKALNDDLQMRSDWYLPLCTGNERLKNEHG 186

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            KLHPTQKPE+LL R+LV+ST   D++LDPF GSGT+ A+AK+L R +I IE   DY+  
Sbjct: 187 LKLHPTQKPESLLHRVLVASTNANDVVLDPFCGSGTTPAMAKRLGRHYIAIERHPDYVKA 246

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A +R+A  + L + +L     KR  PR+ F   VE G++  G +L + Q  + ATV  DG
Sbjct: 247 ARERVAREERLTSEQLATTPAKREMPRIPFGSFVETGVLPAGTLLYDRQKRLKATVTPDG 306

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLR 365
           TL+SG + GSIH++GA ++ + +CNGW FWYFE+ G+   I+ LR
Sbjct: 307 TLVSGNQRGSIHKLGAMLTNAPSCNGWTFWYFERDGQYVQIDVLR 351


>gi|255603684|ref|XP_002538097.1| Modification methylase CcrMI, putative [Ricinus communis]
 gi|223513836|gb|EEF24286.1| Modification methylase CcrMI, putative [Ricinus communis]
          Length = 311

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 190/298 (63%), Positives = 229/298 (76%), Gaps = 1/298 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + II+G+ I  +  LP KSVDLIFADPPYNLQL G L RPD+S VDAV D WD+F SF A
Sbjct: 6   ETIIQGDCIEAMNALPEKSVDLIFADPPYNLQLGGDLLRPDNSKVDAVDDHWDQFESFAA 65

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL A RRVLK +G +WVIGSYHNIFR+G  +Q+L FWILND++WRK+NPMPNF
Sbjct: 66  YDKFTREWLKAARRVLKDDGAIWVIGSYHNIFRVGVAVQDLGFWILNDVIWRKTNPMPNF 125

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWAS S  AK YTFNYDALK AN++VQMRSDW IP+C+G ER++  DG
Sbjct: 126 KGTRFANAHETLIWASKSQNAKRYTFNYDALKMANDEVQMRSDWTIPLCTGEERIKGADG 185

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPEALL R+++S+TKPGD+ILDPFFG GT+GA AK+L R FIGIE + +YI+ 
Sbjct: 186 QKAHPTQKPEALLYRVILSTTKPGDVILDPFFGVGTTGAAAKRLGRKFIGIEREAEYIEH 245

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           A  RIA V P+   +L +   KR EPRV F  +VE GL+ PG  L  A+G  +A  CA
Sbjct: 246 ARTRIAQVTPIAPQDLEMTGSKRAEPRVPFGAIVENGLLHPGDTLYCAKGAHAAK-CA 302


>gi|91762760|ref|ZP_01264725.1| site-specific DNA methyltransferase [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91718562|gb|EAS85212.1| site-specific DNA methyltransferase [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 356

 Score =  408 bits (1049), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 190/347 (54%), Positives = 254/347 (73%), Gaps = 2/347 (0%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +K+KII G+S+  L+K+P+++ DL+FADPPYNLQL   L RPD S V AV D WD+F SF
Sbjct: 5   FKNKIINGDSLEELKKIPSETFDLVFADPPYNLQLKNSLTRPDRSKVSAVNDKWDQFESF 64

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           + YD FT AWL  CRR+LK +G +WVIGSYHNIFR+GT +QNL FWILND++W K+NPMP
Sbjct: 65  KKYDDFTVAWLSECRRILKKDGAIWVIGSYHNIFRVGTAIQNLGFWILNDVIWNKNNPMP 124

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRG RF NAHETLIWAS S K+K YTFNY +LK  N+D+QMRS+W +PIC+G+ERL+ K
Sbjct: 125 NFRGTRFTNAHETLIWASKSEKSK-YTFNYQSLKCLNDDLQMRSNWNLPICNGAERLK-K 182

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+K+H TQKPE+LL R+L++S+   D+ILDPF GSGT+  VAKKL R + GIE ++ Y 
Sbjct: 183 NGKKVHSTQKPESLLHRVLLASSNKDDLILDPFLGSGTTATVAKKLGRKYYGIEKEKTYF 242

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
             A +R+ + +PL +  L  L   R++PR+ F  LVE G+I+PG  + + +  I A + A
Sbjct: 243 KAAEERLKNTKPLEDNFLDTLKNNRSKPRIPFGSLVELGIIKPGTSIFDQKKKIVAKIMA 302

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLR 365
           DG++      GSIH+V A + GSE+CNGW +W+    G    I+ LR
Sbjct: 303 DGSIKHNQAEGSIHKVAATILGSESCNGWTYWHCTVNGVSVPIDNLR 349


>gi|304319996|ref|YP_003853639.1| modification methylase [Parvularcula bermudensis HTCC2503]
 gi|303298899|gb|ADM08498.1| modification methylase [Parvularcula bermudensis HTCC2503]
          Length = 344

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/341 (56%), Positives = 253/341 (74%), Gaps = 2/341 (0%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           ++ +P  SVDLIFADPPYNLQL   L RPD S VD V D+WD+F SF AYDAF RAWL  
Sbjct: 1   MKMIPDGSVDLIFADPPYNLQLGDGLTRPDQSTVDGVNDAWDQFGSFAAYDAFCRAWLSE 60

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
            RR+LKP+G +WVIG+YHNIFR+G+++Q+L +WI ND+VW K+NPMPNFRG R QNAHET
Sbjct: 61  ARRLLKPDGAIWVIGTYHNIFRLGSIIQDLEYWIQNDVVWVKTNPMPNFRGTRLQNAHET 120

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           LIWA+   +++  TFNY +LK AN+D+QMRSDW  P+C+G ERL+N  G+KLHPTQKPEA
Sbjct: 121 LIWAARGKESRP-TFNYHSLKTANDDLQMRSDWTFPLCTGQERLKN-GGKKLHPTQKPEA 178

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           LL RIL+ +T PGD++LDPFFG+GT+GAVAK+L R +IGIE +  YID A +RIA+++P 
Sbjct: 179 LLHRILLGTTNPGDLVLDPFFGTGTTGAVAKRLGRHYIGIEREAAYIDAAAERIAAIEPE 238

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSI 331
               +T +   R E R+ F  LVE GL+ PG +L  A+    A V ADG+L +    GSI
Sbjct: 239 AAEMVTPMPSPRREARIPFGRLVEDGLLSPGTVLYCAKRRYRAKVKADGSLATPGATGSI 298

Query: 332 HRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           H++GA +  + +CNGW FW+ E+ G L  I+TLR  VR ++
Sbjct: 299 HKIGAHLQNAPSCNGWTFWHVERQGRLLPIDTLRQTVRAQM 339


>gi|148654551|ref|YP_001274756.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus sp.
           RS-1]
 gi|148566661|gb|ABQ88806.1| DNA methylase N-4/N-6 domain protein [Roseiflexus sp. RS-1]
          Length = 373

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 197/354 (55%), Positives = 260/354 (73%), Gaps = 5/354 (1%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++II+G+ + VL+  PAKSVDLIFADPPYNLQL  QL RP+ ++VD V D WD+F++   
Sbjct: 18  NEIIQGDCVEVLKTFPAKSVDLIFADPPYNLQLRNQLLRPNQTVVDGVDDEWDQFANVAE 77

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YDAFTR WL ACRRVLK +GT+WVIGSYHNIFRIGT++ +L +WILND++W K+NPMPNF
Sbjct: 78  YDAFTRNWLSACRRVLKDDGTIWVIGSYHNIFRIGTIMMDLGYWILNDVIWYKTNPMPNF 137

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG RFQNA ETLIWA  S + K YTFNY A+K  N++ QM++ W IP+C+G ER++  +G
Sbjct: 138 RGTRFQNATETLIWAKKSVEQKKYTFNYHAMKHLNDEKQMQNVWHIPLCTGPERIK-LNG 196

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K+H TQKPEALL R++++S+ PGD++LDPFFGSGT+GAVAKKL+R++IGIE++  YIDI
Sbjct: 197 KKVHSTQKPEALLYRVILASSNPGDVVLDPFFGSGTTGAVAKKLKRNYIGIELEPAYIDI 256

Query: 261 ATKRIASVQPLGNIELTVLT--GKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           A KRI ++ P+  ++ T L    KRT PRV+F  L+E   I  GQ + +    + ATV A
Sbjct: 257 ARKRIDTL-PMSLLDETELVTPSKRTVPRVSFGQLIESHYITVGQKVFSKDRKVVATVKA 315

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFE-KLGELHSINTLRILVRKE 371
           D  L+ G   GSIHR+ A        NGW +WY E + G + SI+ LR   R E
Sbjct: 316 DSHLLWGNVTGSIHRIAALAQNKPAFNGWEYWYCEDQEGNVISIDALRERYRIE 369


>gi|309792788|ref|ZP_07687231.1| DNA methylase N-4/N-6 domain-containing protein [Oscillochloris
           trichoides DG6]
 gi|308225152|gb|EFO78937.1| DNA methylase N-4/N-6 domain-containing protein [Oscillochloris
           trichoides DG6]
          Length = 357

 Score =  405 bits (1041), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/353 (53%), Positives = 254/353 (71%), Gaps = 3/353 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I+ G+ I +L  LP K VDLIFADPPYNLQL  +L RP+ ++VDAVTD+WD+F+ F A
Sbjct: 2   NHILHGSCIDLLPSLPEKCVDLIFADPPYNLQLQNELIRPNQTVVDAVTDTWDQFADFAA 61

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FT  WL ACRRVLK +GT+WVIGSYHNIFR+G ++ +L +WILND++W K+NPMPNF
Sbjct: 62  YDHFTEQWLSACRRVLKDDGTIWVIGSYHNIFRVGKIMMDLGYWILNDVIWHKTNPMPNF 121

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG RFQNA ET+IWA  S + K YTF+Y A+K  N+D QM++ W IP+C+G+ER++  DG
Sbjct: 122 RGTRFQNATETMIWAKKSREQKKYTFHYQAMKNFNDDKQMQNVWYIPLCTGAERIK-IDG 180

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K H TQKPEALL R+LV+S+ PGD++LDPFFGSGT+GAVAK+L+R++IGIE   +Y++I
Sbjct: 181 KKAHSTQKPEALLYRVLVASSNPGDMVLDPFFGSGTTGAVAKRLQRNYIGIERSAEYVEI 240

Query: 261 ATKRIASVQPLGNIELTVLT-GKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           A +RIA++         +LT  KR  PR++F  L+E   I  GQ + +    ++A V AD
Sbjct: 241 ARQRIAAISATCLEHGELLTRSKRNAPRISFGQLLEAQYISVGQPIFSQDRAVTAIVKAD 300

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEK-LGELHSINTLRILVRKE 371
             LI   + GSIH++ A V      NGW +WY+E   G L SI+ LR   R E
Sbjct: 301 AQLICNDQTGSIHKIAASVQNRAAANGWEYWYYEDAAGNLVSIDELRERYRHE 353


>gi|156742203|ref|YP_001432332.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156233531|gb|ABU58314.1| DNA methylase N-4/N-6 domain protein [Roseiflexus castenholzii DSM
           13941]
          Length = 369

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/361 (53%), Positives = 258/361 (71%), Gaps = 8/361 (2%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++II+G+ + +L  LP  S+DLIFADPPY+LQL  +L+RP+ + VDAV D WDKF S +A
Sbjct: 6   NQIIEGDCVEILNTLPETSIDLIFADPPYHLQLQNELHRPNMTKVDAVDDDWDKFESMQA 65

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL AC+RVLKP GT+WVIG+YHNIFR+G M+Q+L FWILND++W K NPMPNF
Sbjct: 66  YDEFTRTWLTACKRVLKPTGTIWVIGTYHNIFRVGAMMQDLGFWILNDVIWIKLNPMPNF 125

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD-WLIPICSGSERLRNKD 199
           RG RF NAHETLIWAS    A  YTFNY A+K  N++ QMRSD WL+P+ +GSER++N+ 
Sbjct: 126 RGVRFTNAHETLIWASTGKDAT-YTFNYYAMKGLNDEKQMRSDWWLLPLATGSERVKNEH 184

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K H TQKPEALL R+++SS+ PGD++LDPFFGSGT+G VAK+L R++IGIE ++ Y+ 
Sbjct: 185 GDKAHSTQKPEALLYRVILSSSNPGDVVLDPFFGSGTTGVVAKRLHRNWIGIEKEKRYVQ 244

Query: 260 IATKRIASVQP--LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNIS-ATV 316
           IA KRI ++QP         V +  ++ P+V F++LVE G +QPGQ L   +     AT+
Sbjct: 245 IAQKRIDAMQPEMFDAATFDVKSKAKSAPKVEFSVLVEHGYVQPGQRLFFGKDKTKVATI 304

Query: 317 CADGTLISGTEL-GSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLR--ILVRKELY 373
             D  L +     GSIH+ G+    +  CNGW  W+ E  G++ S++ +R    V K LY
Sbjct: 305 KPDARLRTADGFEGSIHQAGSHYMNNAPCNGWEHWFIEVDGQMISLDEVREKFRVDKGLY 364

Query: 374 N 374
           N
Sbjct: 365 N 365


>gi|148260450|ref|YP_001234577.1| DNA methylase N-4/N-6 domain-containing protein [Acidiphilium
           cryptum JF-5]
 gi|146402131|gb|ABQ30658.1| DNA methylase N-4/N-6 domain protein [Acidiphilium cryptum JF-5]
          Length = 360

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 186/349 (53%), Positives = 256/349 (73%), Gaps = 1/349 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+++ G+++ ++  LP  S+D +FADPPYNLQL G+L RPD S+VD V D WDKF+ F A
Sbjct: 12  DQLLLGDAVEMMRMLPDASIDCVFADPPYNLQLRGELRRPDDSVVDGVDDDWDKFTDFAA 71

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD F+RAWL   RR++  + T+WVIGSYHNIFR+G ++Q+L FWILND++WRK+NPMPNF
Sbjct: 72  YDEFSRAWLSEARRLMHKDATIWVIGSYHNIFRLGAIMQDLGFWILNDVIWRKTNPMPNF 131

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RGRRF NAHETLIWA+  PK++ Y FNY A+K+ N+D QMRSDW IP+C+G ERLRN+ G
Sbjct: 132 RGRRFTNAHETLIWAAREPKSR-YRFNYQAMKSLNDDTQMRSDWTIPLCTGGERLRNQHG 190

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            KLHPTQKPEALL R+++++T P D++LDPF G+ T+  VAK+L R FIGIE    Y++ 
Sbjct: 191 LKLHPTQKPEALLHRVILAATNPDDVVLDPFSGTATTATVAKRLNRHFIGIERHPAYVEA 250

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
              R+  ++         +  +R  PR+AF +LVERGL+ PG +L +    +SATV AD 
Sbjct: 251 GWARLREMRAAPAHLTRPMPSRREAPRIAFGVLVERGLVPPGTLLHDRLRRVSATVAADA 310

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVR 369
           ++I+G   GSIH+VGA V  + +CNGW FW+ E+ G L +++ +R  +R
Sbjct: 311 SIIAGAHRGSIHQVGAAVQNAASCNGWTFWHIEREGRLVALDHVRETLR 359


>gi|326403643|ref|YP_004283725.1| hypothetical protein ACMV_14960 [Acidiphilium multivorum AIU301]
 gi|325050505|dbj|BAJ80843.1| hypothetical protein ACMV_14960 [Acidiphilium multivorum AIU301]
          Length = 358

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 186/349 (53%), Positives = 256/349 (73%), Gaps = 1/349 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+++ G+++ ++  LP  S+D +FADPPYNLQL G+L RPD S+VD V D WDKF+ F A
Sbjct: 10  DQLLLGDAVEMMRMLPDASIDCVFADPPYNLQLRGELRRPDDSVVDGVDDDWDKFTDFAA 69

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD F+RAWL   RR++  + T+WVIGSYHNIFR+G ++Q+L FWILND++WRK+NPMPNF
Sbjct: 70  YDEFSRAWLSEARRLMHKDATIWVIGSYHNIFRLGAIMQDLGFWILNDVIWRKTNPMPNF 129

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RGRRF NAHETLIWA+  PK++ Y FNY A+K+ N+D QMRSDW IP+C+G ERLRN+ G
Sbjct: 130 RGRRFTNAHETLIWAAREPKSR-YRFNYQAMKSLNDDTQMRSDWTIPLCTGGERLRNQHG 188

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            KLHPTQKPEALL R+++++T P D++LDPF G+ T+  VAK+L R FIGIE    Y++ 
Sbjct: 189 LKLHPTQKPEALLHRVILAATNPDDVVLDPFSGTATTATVAKRLNRHFIGIERHPAYVEA 248

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
              R+  ++         +  +R  PR+AF +LVERGL+ PG +L +    +SATV AD 
Sbjct: 249 GWARLREMRAAPAHLTRPMPSRREAPRIAFGVLVERGLVPPGTLLHDRLRRVSATVAADA 308

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVR 369
           ++I+G   GSIH+VGA V  + +CNGW FW+ E+ G L +++ +R  +R
Sbjct: 309 SIIAGAHRGSIHQVGAAVQNAASCNGWTFWHIEREGRLVALDHVRETLR 357


>gi|49420962|gb|AAT65821.1| M.EsaWC2I [uncultured bacterium]
          Length = 366

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/357 (54%), Positives = 253/357 (70%), Gaps = 6/357 (1%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++II+G+ I  L   P KS+DLIFADPPYNLQL  +L+RP+ + VDAV D WDKF S +A
Sbjct: 6   NQIIEGDCIETLSTFPEKSIDLIFADPPYNLQLQNELHRPNMTKVDAVDDQWDKFESLQA 65

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL AC+RVLKP GT+WVIG+YHNIFR+G ++Q+L FWILND++W K+NPMPNF
Sbjct: 66  YDEFTRRWLTACKRVLKPTGTIWVIGTYHNIFRVGAIMQDLGFWILNDVIWIKTNPMPNF 125

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD-WLIPICSGSERLRNKD 199
           RG RF NAHETLIWAS + K   YTFN+ A+K  N+D QMRSD WL+ + +GSER+++  
Sbjct: 126 RGVRFTNAHETLIWAS-TGKGATYTFNHQAMKGLNDDKQMRSDWWLLSLATGSERVKDDH 184

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           GEK H TQKPEALL R+++SS+ PGD++LDPFFGSGT+G VAK+L R++IG+E ++ YI+
Sbjct: 185 GEKAHSTQKPEALLYRVILSSSNPGDVVLDPFFGSGTTGVVAKRLHRNWIGVEREKKYIE 244

Query: 260 IATKRIASVQP--LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL-TNAQGNISATV 316
           IA KRI +VQP     +   V +  +T PRV F+ LVE G +QPGQ L      N  A +
Sbjct: 245 IARKRIDAVQPEVFNPVVFDVRSKAKTAPRVEFSTLVEHGYVQPGQTLFFRKDTNKVAFI 304

Query: 317 CADGTLISGTEL-GSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
             D  L +G    GSIH+ G+    +  CNGW  W+ +  G   S+  LR   R ++
Sbjct: 305 KPDARLRTGDGFEGSIHQAGSYYMNNAPCNGWEHWFVQVNGHFISLGDLREQFRMDM 361


>gi|219850190|ref|YP_002464623.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
           aggregans DSM 9485]
 gi|219544449|gb|ACL26187.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aggregans DSM
           9485]
          Length = 369

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/361 (53%), Positives = 257/361 (71%), Gaps = 8/361 (2%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +++I+G+ + +L  LP  S+DLIFADPPY+LQL  +LYRP+ + VDAV D WDKF S +A
Sbjct: 6   NQVIEGDCVEILNTLPETSIDLIFADPPYHLQLQNELYRPNMTKVDAVDDDWDKFESMQA 65

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL AC+RVLKP GT+WVIG+YHNIFR+G ++Q+L FWILND++W K NPMPNF
Sbjct: 66  YDEFTRTWLTACKRVLKPTGTIWVIGTYHNIFRVGAIMQDLGFWILNDVIWIKLNPMPNF 125

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD-WLIPICSGSERLRNKD 199
           RG RF NAHETLIWAS    A  YTFNY A+K  N++ QMRSD WL+P+ +GSER++N++
Sbjct: 126 RGVRFTNAHETLIWASTGKDAT-YTFNYYAMKGLNDEKQMRSDWWLLPLATGSERVKNEN 184

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K H TQKPEALL R+++SS+ PGD++LDPFFGSGT+G VAK+L R++IGIE ++ YI 
Sbjct: 185 GDKAHSTQKPEALLYRVILSSSNPGDVVLDPFFGSGTTGVVAKRLHRNWIGIEKEKKYIQ 244

Query: 260 IATKRIASVQP--LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNIS-ATV 316
           IA KRI +VQP         V +  ++ P+V F++LVE G +QPGQ L   +     AT+
Sbjct: 245 IAQKRIDAVQPEMFDAATFDVKSKAKSAPKVEFSVLVEHGYVQPGQRLFFGKDKTKVATI 304

Query: 317 CADGTLISGTEL-GSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLR--ILVRKELY 373
             D  L +     GSIH+ G+    +  CNGW  W+ E  G++  +  +R    V K LY
Sbjct: 305 KPDSRLRTADGFEGSIHQAGSHYMNNAPCNGWEHWFIEVDGQMIGLGEVREKFRVDKGLY 364

Query: 374 N 374
           N
Sbjct: 365 N 365


>gi|159899562|ref|YP_001545809.1| DNA methylase N-4/N-6 domain-containing protein [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159892601|gb|ABX05681.1| DNA methylase N-4/N-6 domain protein [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 375

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/355 (57%), Positives = 255/355 (71%), Gaps = 7/355 (1%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+I+ G+   VL  LP  SVDLIFADPPYNLQL G L RP+ + VDAV D WD F  F A
Sbjct: 9   DQILLGDCRDVLPLLPPASVDLIFADPPYNLQLRGDLLRPNMTHVDAVDDDWDSFRDFAA 68

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YDAFTRAWL AC+RVLK NGT+WVIGSYHNI+R+GT+LQ+L FWILNDIVW K NPMPNF
Sbjct: 69  YDAFTRAWLQACQRVLKDNGTMWVIGSYHNIYRVGTILQDLGFWILNDIVWIKRNPMPNF 128

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG R  NAHETLIW +  P  K YTFNY AL+  N+D QMRSDW  P+C+G+ERLR  +G
Sbjct: 129 RGVRLTNAHETLIWCAKLPGQK-YTFNYHALRHLNDDKQMRSDWEFPLCTGNERLR-ING 186

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K+H TQKPEALL R+L++S+  GD++LDPFFG+GT+GAVAK+L R +IGIE    Y++ 
Sbjct: 187 NKVHSTQKPEALLYRVLLASSNVGDVVLDPFFGTGTTGAVAKRLARHYIGIERDPSYVEA 246

Query: 261 ATKRIASVQ-PLGNIELTVL-TGKRTEPRVAFNLLVERGLIQPGQIL-TNAQGNISATVC 317
           A  RIA+++ P     L  L + KR  PR+ F  L+E GL+Q GQ L  N   N+ AT+ 
Sbjct: 247 ARGRIAAIESPSSTDALQALPSNKRRIPRIPFGNLLEHGLLQAGQQLWFNRDPNLVATLL 306

Query: 318 ADGTL-ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKL-GELHSINTLRILVRK 370
           AD +L +S    GSIH++G  ++G  +CNGW  W+F+   G L SI+ LR  VR+
Sbjct: 307 ADASLRMSDGTRGSIHKLGTILTGQPSCNGWEHWFFQASDGTLTSIDVLRQEVRR 361


>gi|320161362|ref|YP_004174586.1| putative modification methylase [Anaerolinea thermophila UNI-1]
 gi|319995215|dbj|BAJ63986.1| putative modification methylase [Anaerolinea thermophila UNI-1]
          Length = 368

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/356 (56%), Positives = 257/356 (72%), Gaps = 7/356 (1%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I++G+   +L  LP +S+DLIFADPPYNLQL   LYRPD S VDAV DSWD+F+SF  
Sbjct: 11  NQILQGDCRQILPSLPDQSIDLIFADPPYNLQLQQDLYRPDRSRVDAVNDSWDQFTSFAE 70

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD F+R+WL  CRRVLK +G +WVIG+YHNIFR+GT+LQ+L FWILND+VW KSNPMPNF
Sbjct: 71  YDEFSRSWLTECRRVLKDDGAIWVIGTYHNIFRLGTILQDLGFWILNDVVWIKSNPMPNF 130

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG RF NAHETLIWA  S +A  YTFN+ A+KA NED+QMRSDW IPICSG+ER+R   G
Sbjct: 131 RGVRFTNAHETLIWAVKSRRA-NYTFNHHAMKALNEDLQMRSDWYIPICSGTERIRIH-G 188

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K+H TQKPEALL RI++++T+PGD+ILDPFFG+GT+GAVA++L R++IGIE +  YI++
Sbjct: 189 KKVHSTQKPEALLYRIILATTRPGDVILDPFFGTGTTGAVARRLGRNWIGIEKEPRYIEL 248

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL-TNAQGNISATVCAD 319
           A +RI  ++P     L +    R + R+ F  LVE+ L+QPGQIL  +    I A V +D
Sbjct: 249 ARQRIEQIEPYPQQALALPVRSR-KSRLPFGRLVEQNLVQPGQILFFDRNPEIRAVVLSD 307

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYNC 375
           G L      GSIH    K+ G  T NGW  W+F  L E      + IL +K L N 
Sbjct: 308 GHLSVNGWKGSIHMTAEKICGHPT-NGWERWFF--LDEQGIFQPISILRQKYLSNV 360


>gi|262276831|ref|ZP_06054624.1| modification methylase CcrMI (Adenine-specificmethyltransferase
           CcrMI) (M.CcrMI) [alpha proteobacterium HIMB114]
 gi|262223934|gb|EEY74393.1| modification methylase CcrMI (Adenine-specificmethyltransferase
           CcrMI) (M.CcrMI) [alpha proteobacterium HIMB114]
          Length = 353

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 181/346 (52%), Positives = 250/346 (72%), Gaps = 2/346 (0%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           + +  L+++ ++SVDLIFADPPYNLQL  +L+RPD S V AV D WDKF SF+ YD FT 
Sbjct: 10  DCLGKLKEIESESVDLIFADPPYNLQLKNKLFRPDASKVSAVNDYWDKFDSFKTYDDFTN 69

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
           +WL  C+R+LK NG++WVIGSYHNIFR+G ++Q+ ++WILND++W K NPMPNF+G R  
Sbjct: 70  SWLKECKRILKKNGSIWVIGSYHNIFRVGKLIQDNSYWILNDVIWNKRNPMPNFKGTRLT 129

Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
           NAHETLIWA+ S K+K YTFNY ++K  NED Q+RSDW IPIC+GSER+ +K+ +K+H T
Sbjct: 130 NAHETLIWAAKSEKSK-YTFNYHSMKTFNEDKQLRSDWDIPICNGSERITSKN-KKIHST 187

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           QKPEALL R+L+ ++   DI+LDPF G+GT+GAVAKKL R+FIGIE  + Y   A +RI 
Sbjct: 188 QKPEALLYRVLLCASNKNDIVLDPFMGTGTTGAVAKKLGRNFIGIEKDKKYFKAAEQRIK 247

Query: 267 SVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGT 326
            ++ +       +T K+ E R+ F  LVE G+++PG  L + +    A V +DG++    
Sbjct: 248 RIKEIDENFNIPMTNKKKEKRIPFGYLVETGIVEPGLNLFDLKKRYKAKVMSDGSIYCNK 307

Query: 327 ELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
             GSIH+VGA++ G  +CNGW++W+F   G+L  I+ LR  +R  L
Sbjct: 308 IQGSIHKVGAEIQGMPSCNGWSYWHFNIEGKLEPIDYLRKKIRSSL 353


>gi|16082180|ref|NP_394624.1| adenine specific DNA methyltransferase [Thermoplasma acidophilum
           DSM 1728]
 gi|10640479|emb|CAC12293.1| probable adenine specific DNA methyltransferase [Thermoplasma
           acidophilum]
          Length = 381

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/351 (53%), Positives = 250/351 (71%), Gaps = 3/351 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +I G+SI +++++P  SVDLIFADPPYNLQL  +LYRP+ + V+ V++ WDKF SF+ YD
Sbjct: 27  VISGDSIEIMKQIPDNSVDLIFADPPYNLQLENELYRPNETKVNGVSEDWDKFRSFQDYD 86

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FT  WL  C+R+LK +GT+WVIG+YHNIFR+G ++Q+L FWILNDIVW K+NPMPNF+G
Sbjct: 87  DFTLNWLSQCKRILKESGTIWVIGTYHNIFRVGKIMQDLGFWILNDIVWIKTNPMPNFKG 146

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
            RF NAHETLIWAS   ++K YTFNY  +KA N+D+QMRSDW IPIC G ER++  +G+K
Sbjct: 147 TRFNNAHETLIWASKDKESK-YTFNYKTMKAYNDDLQMRSDWYIPICQGDERIK-INGQK 204

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           LHPTQKPEALL RI+ +++KPGDI+LDPF G+GT+  VAKKL RSFIGIE +  Y+D   
Sbjct: 205 LHPTQKPEALLYRIITATSKPGDIVLDPFAGTGTTLVVAKKLGRSFIGIEKEPLYVDACR 264

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           +R+ +        L      R + RV F  L+E G ++ G+ L +  G   A V A+GTL
Sbjct: 265 ERLKNTASYQQKLLDYPLEIRPK-RVPFGSLIENGYVKAGEYLYSPDGEARALVLANGTL 323

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
               + GSIH++ A +      NGW FWY ++ G+L SIN LR  + K+ Y
Sbjct: 324 SYEDKYGSIHKISAMILNKPANNGWAFWYVKRDGKLVSINDLRQKLLKDQY 374


>gi|156741987|ref|YP_001432116.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156233315|gb|ABU58098.1| DNA methylase N-4/N-6 domain protein [Roseiflexus castenholzii DSM
           13941]
          Length = 370

 Score =  388 bits (996), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 185/346 (53%), Positives = 246/346 (71%), Gaps = 5/346 (1%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G+ I VL+  P +SVDLIFADPPYNLQL   L RPD ++VD V D+WD+F   + YD
Sbjct: 16  IIQGDCIQVLQMFPEQSVDLIFADPPYNLQLRHALLRPDQTVVDGVDDAWDRFEDVQEYD 75

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           AFTRAWL ACRRVLK +GT+WVIG+YHNIFR+G ++ +L +WILND++W K+NPMPNFRG
Sbjct: 76  AFTRAWLGACRRVLKDDGTIWVIGTYHNIFRVGAIMMDLGYWILNDVIWHKTNPMPNFRG 135

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
            RFQNA ETLIWA  S   K YTFNY A+K  NE+ QM++ W +P+C+G+ER++  +G+K
Sbjct: 136 VRFQNATETLIWAKKSADQKKYTFNYHAMKHLNEEKQMQNVWHLPLCTGAERVK-INGKK 194

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            H TQKPEALL R+++SS+ PGD++LDPFFGSGT+G VA++L+R +IGIE+   Y++IA 
Sbjct: 195 AHSTQKPEALLYRVILSSSNPGDLVLDPFFGSGTTGVVARRLKRHYIGIELDPAYVEIAR 254

Query: 263 KRIASVQPLGNIELTVLT--GKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
            RI    P+   +  +L    KR  PRV F  LVE   ++ GQ L ++  N+ A V AD 
Sbjct: 255 TRIEKT-PVSVCDDAMLATRSKRDMPRVGFGQLVEAQYLRVGQNLYSSDRNVVAIVRADS 313

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFE-KLGELHSINTLR 365
            L  G    SIHR+ A        NGW +W++E + G L SI++LR
Sbjct: 314 QLQWGNITSSIHRIAALAQHKPAFNGWEYWHYEDQAGRLVSIDSLR 359


>gi|330813680|ref|YP_004357919.1| modification methylase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486775|gb|AEA81180.1| modification methylase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 350

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 179/299 (59%), Positives = 234/299 (78%), Gaps = 2/299 (0%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           +NS   +K+KI++GNSI +L+K+P ++ DL+FADPPYNLQL+  L RPD+S VDAV D W
Sbjct: 2   KNSKNPYKNKILQGNSIEILKKIPDETFDLVFADPPYNLQLDKSLERPDNSKVDAVDDQW 61

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           D+FSSF+AYD FT  WL  CRRVLK NGT+WVIGSYHNIFR+G  +Q+LNFWILND+VW 
Sbjct: 62  DQFSSFKAYDLFTNQWLRECRRVLKKNGTIWVIGSYHNIFRVGKEIQDLNFWILNDVVWN 121

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K NPMPNF+G RF NAHETLIWA+   K+K YTFNY++LK  N+D Q+RSDW + ICSG+
Sbjct: 122 KRNPMPNFKGTRFTNAHETLIWAAKEQKSK-YTFNYNSLKCFNDDKQLRSDWELAICSGN 180

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           ER + K+G K H TQKPEALL R+++S+T   D+ILDPFFG+GT+GAVAKKL R+F+GIE
Sbjct: 181 ERCK-KNGTKAHSTQKPEALLYRVILSTTNKDDLILDPFFGTGTTGAVAKKLGRNFLGIE 239

Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
            ++ YI++A KRI  ++P+ +  L  +  KR E R+ F +LVE G+I+PG  L + + N
Sbjct: 240 KEKKYIEVAKKRIDKIRPIEDEYLKTIQKKRNEKRIPFGMLVESGIIEPGISLYDNKKN 298


>gi|218661107|ref|ZP_03517037.1| site-specific DNA-methyltransferase (adenine-specific) protein
           [Rhizobium etli IE4771]
          Length = 252

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 171/224 (76%), Positives = 206/224 (91%)

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
           PD SLVDAV D WD+F+SFEAYDAFTRAWLLACRRVLKP G++WVIGSYHNIFR+G  LQ
Sbjct: 29  PDQSLVDAVDDEWDQFASFEAYDAFTRAWLLACRRVLKPTGSIWVIGSYHNIFRVGATLQ 88

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
           +LNFWILNDI+WRK+NPMPNF+GRRFQNAHET+IWASP+ KAKGYTFNYDA+KAAN+DVQ
Sbjct: 89  DLNFWILNDIIWRKTNPMPNFKGRRFQNAHETMIWASPNAKAKGYTFNYDAMKAANDDVQ 148

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
           MRSDWL PIC+G+ERL+ +DG+K+HPTQKPEALL+R++++STKPGDI+LDPFFGSGT+GA
Sbjct: 149 MRSDWLFPICNGNERLKGEDGKKVHPTQKPEALLARVIMASTKPGDIVLDPFFGSGTTGA 208

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
           VAK+L   F+G+E +QDYID A+  IA+V+PLG  ELTV+TGK+
Sbjct: 209 VAKRLGCKFVGMEREQDYIDAASASIAAVEPLGKAELTVMTGKK 252


>gi|260495302|ref|ZP_05815429.1| DNA methylase [Fusobacterium sp. 3_1_33]
 gi|260197080|gb|EEW94600.1| DNA methylase [Fusobacterium sp. 3_1_33]
          Length = 357

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/354 (50%), Positives = 247/354 (69%), Gaps = 2/354 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI KG+SI VL+K+P++SVD IFADPPY +Q  G+L R D +  + V D WDKF +F+ 
Sbjct: 4   NKIFKGDSIEVLKKIPSESVDFIFADPPYYMQTEGELLRTDGTKFNGVEDEWDKFENFQD 63

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD F++ WL  CRRVLK NGT+ VIGS+ NI+RIG ++Q+L +WILNDI+W+K+NP+PNF
Sbjct: 64  YDNFSKKWLGECRRVLKKNGTIAVIGSFQNIYRIGNIMQDLGYWILNDIIWKKTNPVPNF 123

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G+RF N+HET++W S   K+K  TFNY  +K  N D Q +S W IP+C+G+ERL++++G
Sbjct: 124 SGKRFCNSHETILWCSKDKKSK-ITFNYKTMKYLNGDKQEKSVWEIPLCTGNERLKDEEG 182

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            KLH TQKPE LL +IL+S TKP DI+LDPFFG+GT+GAVA +  R++IGIE ++ YI  
Sbjct: 183 NKLHSTQKPEKLLYKILISMTKPNDIVLDPFFGTGTTGAVAVETGRNYIGIEREEKYIKA 242

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KRIAS     N+ +T L  +   P+V    LVE+G ++  Q+L N+ G    TV ++G
Sbjct: 243 AEKRIASKIYQKNM-ITELLLEVKPPKVPLKKLVEKGYLKENQVLYNSLGEAKVTVLSNG 301

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
            +  G E  SIH++ AK+      NGW+++Y    G+L  +N LR    KE+ N
Sbjct: 302 DVFDGNEKLSIHKMSAKILNKTNNNGWDYFYVMNNGKLIPLNDLRYQYDKEVNN 355


>gi|256027628|ref|ZP_05441462.1| adenine specific DNA methyltransferase (HINFIM) [Fusobacterium sp.
           D11]
 gi|289765586|ref|ZP_06524964.1| methylase [Fusobacterium sp. D11]
 gi|289717141|gb|EFD81153.1| methylase [Fusobacterium sp. D11]
          Length = 357

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/354 (50%), Positives = 246/354 (69%), Gaps = 2/354 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI KG+SI VL+K+P++SVD IFADPPY +Q  G+L R D +  + V D WDKF +F+ 
Sbjct: 4   NKIFKGDSIEVLKKIPSESVDFIFADPPYYMQTEGELLRTDGTKFNGVEDEWDKFENFQD 63

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD F++ WL  CRRVLK NGT+ VIGS+ NI+RIG ++Q+L +WILNDI+W+K+NP+PNF
Sbjct: 64  YDNFSKKWLGECRRVLKKNGTIAVIGSFQNIYRIGNIMQDLGYWILNDIIWKKTNPVPNF 123

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G+RF N+HET++W S   K+K  TFNY  +K  N D Q +S W IP+C+G+ERL++++G
Sbjct: 124 SGKRFCNSHETILWCSKDKKSK-ITFNYKTMKYLNGDKQEKSVWEIPLCTGNERLKDEEG 182

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            KLH TQKPE LL +IL+S TKP DI+LDPFFG+GT GAVA +  R++IGIE ++ YI  
Sbjct: 183 NKLHSTQKPEKLLYKILISMTKPNDIVLDPFFGTGTIGAVAVETGRNYIGIEREEKYIKA 242

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KRIAS     N+ +T L  +   P+V    LVE+G ++  Q+L N+ G    TV ++G
Sbjct: 243 AEKRIASKIYQKNM-ITELLLEVKPPKVPLKKLVEKGYLKENQVLYNSLGEAKVTVLSNG 301

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
            +  G E  SIH++ AK+      NGW+++Y    G+L  +N LR    KE+ N
Sbjct: 302 DVFDGNEKLSIHKMSAKILNKTNNNGWDYFYVMNNGKLIPLNDLRYQYDKEVNN 355


>gi|237743216|ref|ZP_04573697.1| modification methylase HinfI [Fusobacterium sp. 7_1]
 gi|229433512|gb|EEO43724.1| modification methylase HinfI [Fusobacterium sp. 7_1]
          Length = 357

 Score =  366 bits (939), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 176/354 (49%), Positives = 244/354 (68%), Gaps = 2/354 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI KG+SI VL+K+P++SVD IFADPPY +Q  G+L R D +  + V D WDKF +F+ 
Sbjct: 4   NKIFKGDSIEVLKKIPSESVDFIFADPPYYMQTEGELLRIDGTKFNGVEDEWDKFENFQD 63

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD F++ WL  CRRVLK NGT+ VIGS+ NI+RIG ++Q+L +WILNDI+W+K+NP+PNF
Sbjct: 64  YDNFSKKWLGECRRVLKKNGTIAVIGSFQNIYRIGNIMQDLGYWILNDIIWKKTNPVPNF 123

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G+RF N+HET++W S   K+K  TFNY  +K  N D Q +S W IP+C+G+ERL++++G
Sbjct: 124 SGKRFCNSHETILWCSKDKKSK-ITFNYKTMKYLNGDKQEKSVWEIPLCTGNERLKDEEG 182

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            KLH TQKPE LL +IL+S TKP DI+LDPFFG+GT+GAVA +  R++IGIE ++ YI  
Sbjct: 183 NKLHSTQKPEKLLYKILISMTKPNDIVLDPFFGTGTTGAVAVETGRNYIGIEREEKYIKA 242

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KRIAS     N+ +T L  +   P+V    LVE+G ++  Q L N+ G     V ++G
Sbjct: 243 AEKRIASKIYQKNM-ITELLLEVKPPKVPLKKLVEKGYLKENQALYNSLGEAKVKVLSNG 301

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
            +  G E  SIH++ AK+      NGW+++Y    G+L  +N LR    KE  N
Sbjct: 302 DVFDGNEKLSIHKMSAKILNKTNNNGWDYFYVMNNGKLIPLNDLRYQYAKEFNN 355


>gi|237741481|ref|ZP_04571962.1| modification methylase HinfI [Fusobacterium sp. 4_1_13]
 gi|260497889|ref|ZP_05816008.1| DNA methylase [Fusobacterium sp. 3_1_33]
 gi|229429129|gb|EEO39341.1| modification methylase HinfI [Fusobacterium sp. 4_1_13]
 gi|260196555|gb|EEW94083.1| DNA methylase [Fusobacterium sp. 3_1_33]
          Length = 370

 Score =  357 bits (915), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 168/349 (48%), Positives = 243/349 (69%), Gaps = 2/349 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G++I  L++LP +S+D IFADPPY +Q  G+L R D +    V D WDKF  F+ YD
Sbjct: 10  IIEGDTIKNLKRLPDESIDFIFADPPYYMQTEGELLRVDGTKFKGVEDKWDKFKDFKDYD 69

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FT+ WL  C+RVLK + T+ VIGS+ NI+RIG ++Q+L +WILNDI+W+K+NP+PNF G
Sbjct: 70  DFTKKWLKECKRVLKKDATIAVIGSFQNIYRIGNIMQDLGYWILNDIIWKKTNPVPNFSG 129

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +RF N+HET++W S + K+K  TFNY  +K  N + Q +S W I +C+G+ERL++++G K
Sbjct: 130 KRFCNSHETILWCSKNKKSK-ITFNYKTMKYLNNEKQEKSIWEISLCTGNERLKDENGNK 188

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           LH +QKPE LL ++L+S+TKP DIILDPFFG+GT+GAVAK++ R++IGIE ++ Y++ A 
Sbjct: 189 LHSSQKPEKLLYKLLISATKPKDIILDPFFGTGTTGAVAKEIGRNYIGIEKEKVYVEAAE 248

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KRIAS     ++ +T LT +   P+V    L+E+G +Q  Q L N+ G     V  DG +
Sbjct: 249 KRIASKNYQRSL-VTELTLEEKPPKVPVKKLLEKGYLQKNQELYNSLGERKGIVLEDGNI 307

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
             G E+ SIH++ AK+      NGW+++Y  + G L S+N LR    KE
Sbjct: 308 FDGIEILSIHKMSAKLLNKANNNGWDYFYIIEKGNLISLNDLRYRYNKE 356


>gi|237745127|ref|ZP_04575608.1| modification methylase HinfI [Fusobacterium sp. 7_1]
 gi|229432356|gb|EEO42568.1| modification methylase HinfI [Fusobacterium sp. 7_1]
          Length = 370

 Score =  357 bits (915), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 168/349 (48%), Positives = 242/349 (69%), Gaps = 2/349 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G++I  L++LP +S+D IFADPPY +Q  G+L R D +    V D WDKF  F+ YD
Sbjct: 10  IIEGDTIKNLKRLPDESIDFIFADPPYYMQTEGELLRVDGTKFKGVEDKWDKFKDFKDYD 69

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FT+ WL  C+RVLK + T+ VIGS+ NI+R+G ++Q+L +WILNDI+W+K+NP+PNF G
Sbjct: 70  DFTKKWLKECKRVLKKDATIAVIGSFQNIYRVGNIMQDLGYWILNDIIWKKTNPVPNFSG 129

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +RF N+HET++W S + K+K  TFNY  +K  N + Q +S W I +C+G+ERL++K+G K
Sbjct: 130 KRFCNSHETILWCSKNKKSK-ITFNYKTMKYLNNEKQEKSIWEISLCTGNERLKDKNGNK 188

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           LH +QKPE LL ++L+S+TKP DIILDPFFG+GT+GAVAK++ R++IGIE ++ Y++ A 
Sbjct: 189 LHSSQKPEKLLYKLLISATKPKDIILDPFFGTGTTGAVAKEIGRNYIGIEKEKVYVEAAE 248

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KRIAS     ++ +T LT +   P+V    L+E+G +Q  Q L N+ G     V  DG +
Sbjct: 249 KRIASKNYQRSL-ITELTLEEKPPKVPVKKLLEKGYLQKNQELYNSLGEKKGIVLEDGNI 307

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
             G E  SIH++ AK+      NGW+++Y  + G L S+N LR    KE
Sbjct: 308 FDGIETLSIHKMSAKLLNKTNNNGWDYFYIIEKGNLISLNDLRYRYDKE 356


>gi|294785907|ref|ZP_06751195.1| modification methylase CcrM [Fusobacterium sp. 3_1_27]
 gi|294487621|gb|EFG34983.1| modification methylase CcrM [Fusobacterium sp. 3_1_27]
          Length = 370

 Score =  355 bits (910), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 167/349 (47%), Positives = 242/349 (69%), Gaps = 2/349 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G++I  L++LP +S+D IFADPPY +Q  G+L R D +    V D WDKF  F+ YD
Sbjct: 10  IIEGDTIKNLKRLPDESIDFIFADPPYYMQTEGELLRVDGTKFKGVEDKWDKFKDFKDYD 69

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FT+ WL  C+RVLK + T+ VIGS+ NI+R+G ++Q+L +WILNDI+W+K+NP+PNF G
Sbjct: 70  NFTKKWLKECKRVLKKDATIAVIGSFQNIYRVGNIMQDLGYWILNDIIWKKTNPVPNFSG 129

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +RF N+HET++W S + K+K  TFNY  +K  N + Q +S W I +C+G+ERL++++G K
Sbjct: 130 KRFCNSHETILWCSKNKKSK-ITFNYKTMKYLNNEKQEKSIWEISLCTGNERLKDENGNK 188

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           LH +QKPE LL ++L+S+TKP DIILDPFFG+GT+GAVAK++ R++IGIE ++ Y++ A 
Sbjct: 189 LHSSQKPEKLLYKLLISATKPKDIILDPFFGTGTTGAVAKEIGRNYIGIEKEKVYVEAAE 248

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KRIAS     ++ +T LT +   P+V    L+E+G +Q  Q L N+ G     V  DG +
Sbjct: 249 KRIASKNYQRSL-ITELTLEEKPPKVPVKKLLEKGYLQKNQELYNSLGERKGIVLEDGKI 307

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
             G E  SIH++ AK+      NGW+++Y  + G L S+N LR    KE
Sbjct: 308 FDGIETLSIHKMSAKLLNKANNNGWDYFYIIEKGNLISLNDLRYRYDKE 356


>gi|315453389|ref|YP_004073659.1| adenine specific DNA methylase [Helicobacter felis ATCC 49179]
 gi|315132441|emb|CBY83069.1| adenine specific DNA methylase [Helicobacter felis ATCC 49179]
          Length = 351

 Score =  345 bits (885), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 169/347 (48%), Positives = 234/347 (67%), Gaps = 7/347 (2%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           DKI++GN + +L  LP++SVDLI ADPPY +Q  G L R +  +   V  +WD+F S +A
Sbjct: 3   DKILQGNCLELLPTLPSESVDLIIADPPYFMQTQGDLLRDNGEVFMGVRAAWDQFESLQA 62

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD+F  AWL  CRRVLK +G++WV+GS+ NI+R+G ++QNL FWILNDI+W K NP+PNF
Sbjct: 63  YDSFCLAWLSECRRVLKAHGSIWVMGSFQNIYRLGYLMQNLGFWILNDIIWAKPNPVPNF 122

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG RF NAHE+L+W +    A+ YTFNY  +KA N + Q RS W I IC G+ERL+  D 
Sbjct: 123 RGSRFCNAHESLLWCAKDKSAR-YTFNYKTMKALNHNKQERSIWHISICMGAERLKGADR 181

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +KLHPTQKP+ALL +I++SS+KPGD+ILDPFFG+GT+GA+AKK +R F+GIE    ++  
Sbjct: 182 KKLHPTQKPQALLEKIILSSSKPGDLILDPFFGTGTTGAIAKKFKRHFLGIEQDPLFVQE 241

Query: 261 ATKRIASVQPLGN--IELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           ATKRIA++ PL N  IE ++   +   P+V+   L + G +Q  Q   + + N    +  
Sbjct: 242 ATKRIANITPLSNPFIEASL---EIKPPKVSLKQLCKAGFLQEKQKFYDKEQNYICYLLE 298

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLR 365
           D  L    E  SIH++ AK    +  NGW ++Y    GE  S++ LR
Sbjct: 299 D-RLHDHQEHLSIHQMAAKHLHKKNHNGWTYFYVFWQGEFVSVDLLR 344


>gi|296126404|ref|YP_003633656.1| DNA methylase N-4/N-6 domain protein [Brachyspira murdochii DSM
           12563]
 gi|296018220|gb|ADG71457.1| DNA methylase N-4/N-6 domain protein [Brachyspira murdochii DSM
           12563]
          Length = 360

 Score =  344 bits (883), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 171/353 (48%), Positives = 237/353 (67%), Gaps = 12/353 (3%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K+ IIKG+++  L+K+P  S+DLIFADPPY +Q  G+L R + +    V D WDKF +FE
Sbjct: 8   KNTIIKGDALEELKKIPDDSIDLIFADPPYYMQTEGELLRTNGTKFSGVDDEWDKFKNFE 67

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YD F+  WL  CRRVLK  G++WVIGS+ NIFRIG ++Q+L FWILNDI+W K+NP+PN
Sbjct: 68  DYDNFSINWLKECRRVLKITGSIWVIGSFQNIFRIGKIMQDLGFWILNDIIWSKTNPVPN 127

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           F G RF NAHETLIW   +   K YTFNY  +K  N D Q +S W I +C+G+ERL++KD
Sbjct: 128 FGGTRFCNAHETLIWCGKNKNTK-YTFNYKTMKHLNNDKQDKSIWNISLCTGNERLKDKD 186

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K+H TQKPE LL ++++SS+KP DI+LDPFFG+GT+GAVAK+L R++IGIE +  YI 
Sbjct: 187 GNKVHSTQKPEELLFKVILSSSKPNDIVLDPFFGTGTTGAVAKRLSRNYIGIEREDKYIY 246

Query: 260 IATKRIASVQPLGNIELTVLTGKRTE---PRVAFNLLVERGLIQPGQILTNAQGNISATV 316
            A  RI +     N+E+T L     E   P+V    L+E+G ++  Q+L + +G+    +
Sbjct: 247 YAKDRIKNT----NVEMTDLINLDYEVKPPKVPIKNLIEKGYLKVNQVLYSKKGDEVCKL 302

Query: 317 CADGTLISGTELG--SIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRIL 367
             +G +    ELG  SIH++ AK+      NGWN++Y     +  SI+ LR +
Sbjct: 303 NENGNV--ENELGNFSIHQMSAKLQNLSKYNGWNYFYIYYKDKFISIDELRYI 353


>gi|127456|sp|P20590|MTH1_HAEIN RecName: Full=Modification methylase HinfI; Short=M.HinfI; AltName:
           Full=Adenine-specific methyltransferase HinfI
 gi|148945|gb|AAA24986.1| methylase [Haemophilus influenzae]
          Length = 359

 Score =  344 bits (882), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 157/353 (44%), Positives = 239/353 (67%), Gaps = 2/353 (0%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           + +I ++ + I+KG+ I  L+ +P +S+DLIFADPPY +Q  G+L R +      V D W
Sbjct: 3   KENINDFLNTILKGDCIEKLKTIPNESIDLIFADPPYFMQTEGKLLRTNGDEFSGVDDEW 62

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           DKF+ F  YD+F   WL  C+R+LK  G++WVIGS+ NI+RIG ++QNL+FWILND++W 
Sbjct: 63  DKFNDFVEYDSFCELWLKECKRILKSTGSIWVIGSFQNIYRIGYIMQNLDFWILNDVIWN 122

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K+NP+PNF G RF NAHET++W S   K K +TFNY  +K  N++ Q RS W + +C+G 
Sbjct: 123 KTNPVPNFGGTRFCNAHETMLWCSKCKKNK-FTFNYKTMKHLNQEKQERSVWSLSLCTGK 181

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           ER+++++G+K H TQKPE+LL ++++SS+KP D++LDPFFG+GT+GAVAK L R++IGIE
Sbjct: 182 ERIKDEEGKKAHSTQKPESLLYKVILSSSKPNDVVLDPFFGTGTTGAVAKALGRNYIGIE 241

Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNI 312
            +Q YID+A KR+  ++P  N ++ +L+ +   P+V    L+E   ++ GQ L +   N 
Sbjct: 242 REQKYIDVAEKRLREIKPNPN-DIELLSLEIKPPKVPMKTLIEADFLRVGQTLFDKNENA 300

Query: 313 SATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLR 365
              V  DG +    E  SIH++ AK       NGW+++Y  +     ++++LR
Sbjct: 301 ICIVTQDGNVKDNEETLSIHKMSAKYLNKTNNNGWDYFYLFRNNNFITLDSLR 353


>gi|283953787|ref|ZP_06371318.1| hypothetical protein C414_000010156 [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794828|gb|EFC33566.1| hypothetical protein C414_000010156 [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 359

 Score =  337 bits (864), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 162/346 (46%), Positives = 226/346 (65%), Gaps = 2/346 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           KD I +GN + +L+ +P KS+DLIFADPPY +Q  G+L R +  +   V D WDKF S +
Sbjct: 3   KDIIFQGNCLEILKTIPDKSIDLIFADPPYFMQTQGELLRTNGEVFSGVNDDWDKFESLK 62

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD F + WL  CRR+LK + ++WVIGS+ NIFR+G ++Q+L FWILNDI+W K NP+PN
Sbjct: 63  AYDDFCKIWLSECRRILKDDASIWVIGSFQNIFRLGYIMQDLGFWILNDIIWNKPNPVPN 122

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           F+G RF N+HETLIW S    +K YTFNY  +K  N + Q +S W I IC G+ERL+  D
Sbjct: 123 FKGTRFCNSHETLIWCSKHKNSK-YTFNYKTMKFLNNNKQEKSIWNIGICIGNERLKGID 181

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K+H TQKPE LL +I++SSTK GD+ILDPFFG+GT+GA+AKKL R +IGIE ++ Y+ 
Sbjct: 182 GKKIHSTQKPEILLEKIILSSTKKGDLILDPFFGTGTTGAIAKKLGRYYIGIEQEKFYVK 241

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           IA  RI  +  + N E+T    +   P+V+   L+  G +   +   +   N    +   
Sbjct: 242 IAESRIRQINIIDN-EITRNELETKPPKVSLEELLNAGFLSENEKFYDKNKNYICYLVNG 300

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLR 365
             +    E+ SIH++ AK    E  NGW+++Y  K     SI++LR
Sbjct: 301 NKVSDENEILSIHKMAAKYLNKENHNGWSYFYIFKNENFISIDSLR 346


>gi|322379181|ref|ZP_08053573.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter suis
           HS1]
 gi|322379987|ref|ZP_08054255.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter suis
           HS5]
 gi|321147576|gb|EFX42208.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter suis
           HS5]
 gi|321148383|gb|EFX42891.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter suis
           HS1]
          Length = 357

 Score =  335 bits (859), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 155/349 (44%), Positives = 233/349 (66%), Gaps = 3/349 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I++GN + +L+ LP++SVD IFADPPY +Q  G+L R   +  + V ++WD+F  F  YD
Sbjct: 7   ILQGNCLDILKDLPSQSVDFIFADPPYFMQTQGELLRVGGARFEGVQETWDQFKDFAHYD 66

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F+  WL  CRR+LK  G++ VIGS+ NI+R+G ++QNL FWI+NDI+W K+NP+PNF G
Sbjct: 67  DFSCLWLAQCRRLLKNRGSICVIGSFQNIYRLGYLMQNLGFWIINDIIWHKTNPVPNFTG 126

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
            R  NAHE ++W +   KA  +TFNY  LK+ N++ Q +S W IP+C+GSERL+N++G K
Sbjct: 127 SRLCNAHEIILWCAKDKKA-SFTFNYKTLKSLNQNKQEKSVWFIPLCTGSERLKNQEGNK 185

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           LHPTQKPE LL ++++ +TKP D+ILDPFFG+GT+GA+AKKL RSF+GIE  + YI  A 
Sbjct: 186 LHPTQKPEQLLEKLILMATKPHDLILDPFFGTGTTGAMAKKLGRSFLGIEKNEIYIKAAQ 245

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           +RI  +  +    +  L  ++  P+V+  +L++ G ++ G  L +        V ADG +
Sbjct: 246 RRIEQI-TISQDAMAYLELEKKPPKVSMKVLIDTGYLKIGDKLYSPDYQEKCQVLADGKV 304

Query: 323 ISGT-ELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRK 370
              + ++ SIH++ AK+      NGW+++Y +   +  S+N LR    K
Sbjct: 305 CDASGQVLSIHKMSAKILNKINHNGWDYFYIKDGMQFISLNQLRYCYHK 353


>gi|315453204|ref|YP_004073474.1| Adenine specific DNA methyltransferase [Helicobacter felis ATCC
           49179]
 gi|315132256|emb|CBY82884.1| Adenine specific DNA methyltransferase [Helicobacter felis ATCC
           49179]
          Length = 356

 Score =  331 bits (848), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 165/354 (46%), Positives = 236/354 (66%), Gaps = 5/354 (1%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           ++ I++G+  ++L+ L + SVD IFADPPY +Q +G+L R   +    V + WDKF  F 
Sbjct: 2   QNTILQGDCAALLKTLSSSSVDFIFADPPYFMQTSGELLRVGGTKFAGVAEEWDKFKDFA 61

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YD+F  AWL  C+RVLK NG++ VIGS+ NI+R+G ++Q+L FW++NDI+W KSNP+PN
Sbjct: 62  HYDSFCEAWLTECKRVLKTNGSICVIGSFQNIYRLGALMQDLGFWVINDIIWAKSNPVPN 121

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           F G R  NAHETL+W +   KA  +TFNY  LKA N D Q +S W IP+C G+ERL++K 
Sbjct: 122 FNGSRLCNAHETLLWCAKDKKA-SFTFNYKTLKALNGDKQEKSIWEIPLCVGAERLKDKQ 180

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G KLHPTQKPE LL ++L+ +T+PGD++LDPFFG+GT+GAVAK+L R+F+GIE   +YI 
Sbjct: 181 GHKLHPTQKPEKLLEKLLLMATRPGDLVLDPFFGTGTTGAVAKRLGRNFLGIEQDSNYIQ 240

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A  RI +  P+     + L  ++  P+V    LV+ G +Q GQ+L +  G     V   
Sbjct: 241 AALARIKNT-PIKMNAFSRLECEKKPPKVPMKTLVDLGYLQVGQVLCSPSGVEQCQVLQS 299

Query: 320 GTL--ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           G +   SG  L SIH++ AK+      NGW+++Y +  G+L ++N LR L  K+
Sbjct: 300 GQVQDSSGAVL-SIHKMSAKILKKINHNGWDYFYTKHEGQLTALNDLRYLYDKD 352


>gi|208435249|ref|YP_002266915.1| adenine specific DNA methyltransferase [Helicobacter pylori G27]
 gi|208433178|gb|ACI28049.1| adenine specific DNA methyltransferase [Helicobacter pylori G27]
          Length = 359

 Score =  330 bits (846), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 164/351 (46%), Positives = 223/351 (63%), Gaps = 3/351 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G+ +  L+  P KSVD IFADPPY +Q  G+L R + +    V D WDKF SF+ YD
Sbjct: 11  IIEGDCLEKLKDFPNKSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKFGSFKEYD 70

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   WL  C+R+LK NG++ VIGS+HNIFRIG  LQNL FWILNDI+W KSNP+PNF G
Sbjct: 71  TFCLGWLKECQRILKDNGSICVIGSFHNIFRIGFHLQNLGFWILNDIIWHKSNPVPNFAG 130

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +R  NAHETLIW +    +K  TFNY  +K  N D Q +S W IPIC G+ERL++  G+K
Sbjct: 131 KRLCNAHETLIWCAKHKNSK-VTFNYKTMKYLNNDKQEKSVWQIPICMGNERLKDAQGKK 189

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +H TQKPE LL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE    YI  AT
Sbjct: 190 VHSTQKPEVLLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDSFYIKEAT 249

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L ++       V  +G +
Sbjct: 250 KRLNNTRDKSDF-ITNLDLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQVLENGQV 308

Query: 323 ISGTEL-GSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
                   SIH++ AK       NGW F+Y     +   ++ LR + +K+ 
Sbjct: 309 RDNENYETSIHKMSAKYLNRTNHNGWKFFYAYYQNQFLLLDELRYICQKDF 359


>gi|307638026|gb|ADN80476.1| adenine specific DNA methyltransferase [Helicobacter pylori 908]
 gi|325996628|gb|ADZ52033.1| adenine specific DNA methyltransferase [Helicobacter pylori 2018]
 gi|325998218|gb|ADZ50426.1| adenine specific DNA methyltransferase [Helicobacter pylori 2017]
          Length = 359

 Score =  329 bits (844), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 165/350 (47%), Positives = 222/350 (63%), Gaps = 3/350 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G+ +  L+  P KSVD IFADPPY +Q  G+L R + +    V D WDKF SFE YD
Sbjct: 11  IIEGDCLEKLKDFPNKSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKFGSFEEYD 70

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   WL  C+R+LK NG++ VIGS+ NIFRIG  LQNL FWILNDIVW KSNP+PNF G
Sbjct: 71  TFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIVWHKSNPVPNFAG 130

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +R  NAHETLIW +    +K  TFNY  +K  N D Q +S W IPIC G+ERL++  G+K
Sbjct: 131 KRLCNAHETLIWCAKHKNSK-VTFNYKTMKYLNNDKQEKSVWQIPICMGNERLKDAQGKK 189

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE    YI  A 
Sbjct: 190 VHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDSFYIKEAA 249

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KR+ S +   +  +T L  +   P++  +LL+ + L++ G  L ++       V  +G +
Sbjct: 250 KRLNSARDKSDF-ITNLELETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQVLENGQV 308

Query: 323 ISGTEL-GSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
                   SIH++ AK       NGW F+Y     +   ++ LR + +++
Sbjct: 309 RDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQRD 358


>gi|108563725|ref|YP_628041.1| adenine specific DNA methyltransferase [Helicobacter pylori HPAG1]
 gi|107837498|gb|ABF85367.1| adenine specific DNA methyltransferase [Helicobacter pylori HPAG1]
          Length = 359

 Score =  329 bits (844), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 165/351 (47%), Positives = 222/351 (63%), Gaps = 3/351 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G+ +  L+  P KSVD IFADPPY +Q  G+L R + +    V D WDKF SFE YD
Sbjct: 11  IIEGDCLEKLKDFPNKSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKFGSFEEYD 70

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           AF   WL  C+R+LK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSNP+PNF G
Sbjct: 71  AFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSNPVPNFAG 130

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +R  NAHETLIW +    +K  +FNY  +K  N D Q +S W IPIC G+ERL++  G+K
Sbjct: 131 KRLCNAHETLIWCAKHKNSK-VSFNYKTMKYLNNDKQEKSVWQIPICMGNERLKDAQGKK 189

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE    YI  A 
Sbjct: 190 VHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDSFYIKEAA 249

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KR+ S +   +  +T L  +   P++  +LL+ + L++ G  L +        V  +G +
Sbjct: 250 KRLNSARDKSDF-ITNLELETKPPKIPMSLLISKQLLKIGDFLYSPNKEKICQVLENGQV 308

Query: 323 ISGTEL-GSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
                   SIH++ AK       NGW F+Y     +   ++ LR + +K+ 
Sbjct: 309 RDNENYETSIHKMSAKYLNRTNHNGWKFFYAYYQNQFLLLDELRYICQKDF 359


>gi|15612336|ref|NP_223989.1| type II DNA modification (methyltransferase [Helicobacter pylori
           J99]
 gi|4155885|gb|AAD06856.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
           pylori J99]
          Length = 359

 Score =  328 bits (842), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 165/350 (47%), Positives = 222/350 (63%), Gaps = 3/350 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G+ +  L+  P KSVD IFADPPY +Q  G+L R + +    V D WDKF SFE YD
Sbjct: 11  IIEGDCLEKLKDFPNKSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKFGSFEEYD 70

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   WL  C+R+LK NG++ VIGS+ NIFRIG  LQNL FWILNDIVW KSNP+PNF G
Sbjct: 71  TFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIVWHKSNPVPNFAG 130

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +R  NAHETLIW +    +K  TFNY  +K  N D Q +S W IPIC G+ERL++  G+K
Sbjct: 131 KRLCNAHETLIWCAKHKNSK-VTFNYKTMKYLNNDKQEKSVWQIPICMGNERLKDVQGKK 189

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE    YI  A 
Sbjct: 190 VHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMDRYFIGIEKDSFYIKEAA 249

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KR+ S +   +  +T L  +   P++  +LL+ + L++ G  L ++       V  +G +
Sbjct: 250 KRLNSTRDKSDF-ITNLELETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQVLENGQV 308

Query: 323 ISGTEL-GSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
                   SIH++ AK       NGW F+Y     +   ++ LR + +++
Sbjct: 309 RDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQRD 358


>gi|317013139|gb|ADU83747.1| adenine specific DNA methyltransferase [Helicobacter pylori
           Lithuania75]
          Length = 359

 Score =  328 bits (842), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 162/351 (46%), Positives = 221/351 (62%), Gaps = 3/351 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF SFE YD
Sbjct: 11  IIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKFGSFEEYD 70

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   WL  C+R+LK NG++ VIGS+HNIFRIG  LQNL FWILNDI+W KSNP+PNF G
Sbjct: 71  TFCLGWLKECQRILKDNGSICVIGSFHNIFRIGFHLQNLGFWILNDIIWHKSNPVPNFAG 130

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +R  NAHETLIW +    +K  TFNY  +K  N D Q +S W IPIC G+ERL++  G+K
Sbjct: 131 KRLCNAHETLIWCAKHKNSK-VTFNYKTMKYLNNDKQEKSVWQIPICMGNERLKDAQGKK 189

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +H TQKPE LL +I++S+TKP DI+LDPFFG+GT+GAVAK + R FIGIE    YI  A 
Sbjct: 190 VHSTQKPEVLLKKIILSATKPKDIVLDPFFGTGTTGAVAKSMNRYFIGIEKDSFYIKEAA 249

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KR+   +   +  +T L  +   P++  +LL+ + L++ G  L ++       V  +G +
Sbjct: 250 KRLNDTRDKSDF-ITNLELETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQVLENGQV 308

Query: 323 ISGTEL-GSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
                   SIH++ AK       NGW F+Y     +   ++ LR + +K+ 
Sbjct: 309 RDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKDF 359


>gi|317014745|gb|ADU82181.1| type II DNA modification (methyltransferase) [Helicobacter pylori
           Gambia94/24]
          Length = 359

 Score =  328 bits (840), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 164/350 (46%), Positives = 222/350 (63%), Gaps = 3/350 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G+ +  L+  P KSVD IFADPPY +Q  G+L R + +    V D WDKF SFE YD
Sbjct: 11  IIEGDCLEKLKDFPNKSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKFGSFEEYD 70

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   WL  C+R+LK NG++ VIGS+ NIFRIG  LQNL FWILNDIVW KSNP+PNF G
Sbjct: 71  TFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIVWHKSNPVPNFAG 130

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +R  NAHETLIW +    +K  TFNY  +K  N D Q +S W IPIC G+ERL++  G+K
Sbjct: 131 KRLCNAHETLIWCAKHKNSK-VTFNYKTMKYLNNDKQEKSVWQIPICMGNERLKDAQGKK 189

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE    YI  A 
Sbjct: 190 VHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDSFYIKEAI 249

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L ++       V  +G +
Sbjct: 250 KRLNNARDKSDF-ITNLDLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQVLENGQV 308

Query: 323 ISGTEL-GSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
                   SIH++ AK       NGW F+Y     +   ++ LR + +++
Sbjct: 309 RDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQRD 358


>gi|308064128|gb|ADO06015.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
           pylori Sat464]
          Length = 359

 Score =  327 bits (838), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 163/351 (46%), Positives = 222/351 (63%), Gaps = 3/351 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF SF+ YD
Sbjct: 11  IIEGDCLEKLKDFPDRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKFGSFKEYD 70

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   WL  C+RVLK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSNP+PNF G
Sbjct: 71  TFCLGWLKECQRVLKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSNPVPNFAG 130

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +R  NAHETLIW +    +K  +FNY  +K  N D Q +S W IPIC G+ERL++  G+K
Sbjct: 131 KRLCNAHETLIWCAKHKNSK-VSFNYKTMKYLNNDKQEKSVWQIPICIGNERLKDAQGKK 189

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE    YI  A 
Sbjct: 190 VHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDSFYIKEAA 249

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L ++       V  +G +
Sbjct: 250 KRLNNTRDKSDF-ITNLVLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQVLENGQV 308

Query: 323 ISGTEL-GSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
                   SIH++ AK       NGW F+Y     +   ++ LR + +KE 
Sbjct: 309 RDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKEF 359


>gi|188528141|ref|YP_001910828.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
           pylori Shi470]
 gi|188144381|gb|ACD48798.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
           pylori Shi470]
          Length = 359

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 163/351 (46%), Positives = 222/351 (63%), Gaps = 3/351 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF SF+ YD
Sbjct: 11  IIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKFGSFKEYD 70

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   WL  C+RVLK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSNP+PNF G
Sbjct: 71  TFCLGWLKECQRVLKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSNPVPNFAG 130

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +R  NAHETLIW +    +K  +FNY  +K  N D Q +S W IPIC G+ERL++  G+K
Sbjct: 131 KRLCNAHETLIWCAKHKNSK-VSFNYKTMKYLNNDKQEKSVWQIPICIGNERLKDAQGKK 189

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE    YI  A 
Sbjct: 190 VHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDSFYIKEAA 249

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L ++       V  +G +
Sbjct: 250 KRLNNTRDKSDF-ITNLVLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQVLENGQV 308

Query: 323 ISGTEL-GSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
                   SIH++ AK       NGW F+Y     +   ++ LR + +KE 
Sbjct: 309 RDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKEF 359


>gi|217034428|ref|ZP_03439841.1| hypothetical protein HP9810_11g10 [Helicobacter pylori 98-10]
 gi|216943098|gb|EEC22572.1| hypothetical protein HP9810_11g10 [Helicobacter pylori 98-10]
          Length = 359

 Score =  326 bits (836), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 163/351 (46%), Positives = 222/351 (63%), Gaps = 3/351 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF SF+ YD
Sbjct: 11  IIEGDCLEKLKDFPDRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKFGSFKEYD 70

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   WL  C+RVLK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSNP+PNF G
Sbjct: 71  TFCLGWLKECQRVLKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSNPVPNFAG 130

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +R  NAHETLIW +    +K  +FNY  +K  N D Q +S W IPIC G+ERL++  G+K
Sbjct: 131 KRLCNAHETLIWCAKHKNSK-VSFNYKTMKYLNNDKQEKSVWQIPICIGNERLKDTQGKK 189

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE    YI  A 
Sbjct: 190 VHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDSFYIKEAA 249

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L ++       V  +G +
Sbjct: 250 KRLNNTRDKSDF-ITNLDLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQVLENGQV 308

Query: 323 ISGTEL-GSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
                   SIH++ AK       NGW F+Y     +   ++ LR + +KE 
Sbjct: 309 RDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKEF 359


>gi|332672842|gb|AEE69659.1| modification methylase BabI [Helicobacter pylori 83]
          Length = 359

 Score =  326 bits (836), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 163/351 (46%), Positives = 222/351 (63%), Gaps = 3/351 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF SF+ YD
Sbjct: 11  IIEGDCLEKLKDFPDRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKFGSFKEYD 70

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   WL  C+RVLK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSNP+PNF G
Sbjct: 71  TFCLGWLKECQRVLKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSNPVPNFAG 130

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +R  NAHETLIW +    +K  +FNY  +K  N D Q +S W IPIC G+ERL++  G+K
Sbjct: 131 KRLCNAHETLIWCAKHKNSK-VSFNYKTMKYLNNDKQEKSVWQIPICIGNERLKDAQGKK 189

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE    YI  A 
Sbjct: 190 VHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDSFYIKEAA 249

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L ++       V  +G +
Sbjct: 250 KRLNNTRDKSDF-ITNLDLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQVLENGQV 308

Query: 323 ISGTEL-GSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
                   SIH++ AK       NGW F+Y     +   ++ LR + +KE 
Sbjct: 309 RDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKEF 359


>gi|254779898|ref|YP_003058004.1| Type II m6A methylase [Helicobacter pylori B38]
 gi|254001810|emb|CAX30048.1| Type II m6A methylase [Helicobacter pylori B38]
          Length = 359

 Score =  326 bits (835), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 161/351 (45%), Positives = 222/351 (63%), Gaps = 3/351 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G+ +  L+  P +SVD +FADPPY +Q  G+L R + +    V D WDKF SF+ YD
Sbjct: 11  IIEGDCLEKLKDFPNRSVDFVFADPPYFMQTEGELKRFEGTKFQGVEDHWDKFGSFKEYD 70

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   WL  C+R+LK NG++ VIGS+HNIFRIG  LQNL FWILNDI+W KSNP+PNF G
Sbjct: 71  TFCLGWLKECQRILKDNGSICVIGSFHNIFRIGFHLQNLGFWILNDIIWHKSNPVPNFAG 130

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +R  NAHETLIW +    +K  TFNY  +K  N D Q +S W IPIC G+ERL++  G+K
Sbjct: 131 KRLCNAHETLIWCAKHKNSK-VTFNYKTMKYLNNDKQEKSVWQIPICMGNERLKDARGKK 189

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +H TQKPEALL +I++S+TKP DI+LDPFFG+GT+GAVAK + R FIGIE    YI  A 
Sbjct: 190 VHSTQKPEALLKKIILSATKPKDIVLDPFFGTGTTGAVAKSMNRYFIGIEKDSFYIKEAA 249

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L +        V  +G +
Sbjct: 250 KRLNNTRDKSDF-ITNLELETKPPKIPMSLLISKQLLKIGDFLYSPNKEKICQVLENGQV 308

Query: 323 ISGTEL-GSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
                   SIH++ AK       NGW F+Y     +   ++ LR + +K+ 
Sbjct: 309 RDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKDF 359


>gi|297380534|gb|ADI35421.1| Modification methylase [Helicobacter pylori v225d]
          Length = 359

 Score =  326 bits (835), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 163/351 (46%), Positives = 222/351 (63%), Gaps = 3/351 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF SF+ YD
Sbjct: 11  IIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKFGSFKEYD 70

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   WL  C+RVLK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSNP+PNF G
Sbjct: 71  TFCLGWLKECQRVLKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSNPVPNFAG 130

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +R  NAHETLIW +    +K  +FNY  +K  N D Q +S W IPIC G+ERL++  G+K
Sbjct: 131 KRLCNAHETLIWCAKHKNSK-VSFNYKTMKYLNNDKQEKSVWQIPICIGNERLKDAQGKK 189

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE    YI  A 
Sbjct: 190 VHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDSFYIKEAE 249

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L ++       V  +G +
Sbjct: 250 KRLNNTRDKSDF-ITNLDLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQVLENGQV 308

Query: 323 ISGTEL-GSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
                   SIH++ AK       NGW F+Y     +   ++ LR + +KE 
Sbjct: 309 RDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKEF 359


>gi|317176855|dbj|BAJ54644.1| adenine specific DNA methyltransferase [Helicobacter pylori F16]
          Length = 359

 Score =  326 bits (835), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 162/351 (46%), Positives = 222/351 (63%), Gaps = 3/351 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF SF+ YD
Sbjct: 11  IIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKFGSFKEYD 70

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   WL  C+R+LK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSNP+PNF G
Sbjct: 71  TFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSNPVPNFAG 130

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +R  NAHETLIW +    +K  +FNY  +K  N D Q +S W IPIC G+ERL++  G+K
Sbjct: 131 KRLCNAHETLIWCAKHKNSK-VSFNYKTMKYLNNDKQEKSVWQIPICIGNERLKDAQGKK 189

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE    YI  A 
Sbjct: 190 VHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDSFYIKEAA 249

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L ++       V  +G +
Sbjct: 250 KRLNNTRDKSDF-ITNLDLETKPPKIPMSLLISKQLLKIGDFLYSSSKEKICQVLENGQV 308

Query: 323 ISGTEL-GSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
                   SIH++ AK       NGW F+Y     +   ++ LR + +KE 
Sbjct: 309 RDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKEF 359


>gi|261838917|gb|ACX98682.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
           pylori 52]
          Length = 359

 Score =  325 bits (834), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 163/351 (46%), Positives = 222/351 (63%), Gaps = 3/351 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF SF+ YD
Sbjct: 11  IIEGDCLEKLKDFPDRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKFDSFKEYD 70

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   WL  C+R+LK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSNP+PNF G
Sbjct: 71  TFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSNPVPNFAG 130

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +R  NAHETLIW +    +K  +FNY  +K  N D Q +S W IPIC G+ERL++  G+K
Sbjct: 131 KRLCNAHETLIWCAKHKNSK-VSFNYKTMKYLNNDKQEKSVWQIPICIGNERLKDAQGKK 189

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE    YI  A 
Sbjct: 190 VHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDSFYIKEAA 249

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KR+ + +   +  +T L  +   P+V  +LL+ + L++ G  L ++       V  +G +
Sbjct: 250 KRLNNTRDKSDF-ITNLGLETKPPKVPMSLLISKQLLKIGDFLYSSNKEKICQVLENGQV 308

Query: 323 ISG-TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
                   SIH++ AK       NGW F+Y     +   ++ LR + +KE 
Sbjct: 309 RDNENHETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKEF 359


>gi|207091630|ref|ZP_03239417.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
           pylori HPKX_438_AG0C1]
          Length = 359

 Score =  325 bits (832), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 161/351 (45%), Positives = 221/351 (62%), Gaps = 3/351 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF SF+ YD
Sbjct: 11  IIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKFGSFKEYD 70

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   WL  C+R+LK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSNP+PNF G
Sbjct: 71  TFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSNPVPNFAG 130

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +R  NAHETLIW +    +K  TFNY  +K  N D Q +S W IPIC G+ERL++  G+K
Sbjct: 131 KRLCNAHETLIWCAKHKNSK-VTFNYKTMKYLNNDKQEKSVWQIPICMGNERLKDAQGKK 189

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +H TQKPEALL +I++S+TKP DI+LDPFFG+GT+GAVAK + R FIGIE    YI  A 
Sbjct: 190 VHSTQKPEALLKKIILSTTKPKDIVLDPFFGTGTTGAVAKSMNRYFIGIEKDSFYIKEAA 249

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L +        V  +G +
Sbjct: 250 KRLNNTRDKSDF-ITNLELETKPPKIPMSLLISKQLLKIGDFLYSPNKEKICQVLENGQV 308

Query: 323 ISGTEL-GSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
                   SIH++ AK       NGW F+Y     +   ++ LR + +K+ 
Sbjct: 309 RDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKDF 359


>gi|308183462|ref|YP_003927589.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
           pylori PeCan4]
 gi|308065647|gb|ADO07539.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
           pylori PeCan4]
          Length = 359

 Score =  325 bits (832), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 162/350 (46%), Positives = 222/350 (63%), Gaps = 3/350 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF SF+ YD
Sbjct: 11  IIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKFGSFKEYD 70

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   WL  C+RVLK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSNP+PNF G
Sbjct: 71  TFCLGWLKECQRVLKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSNPVPNFAG 130

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +R  NAHETLIW +    +K  +FNY  +K  N D Q +S W IPIC G+ERL++  G+K
Sbjct: 131 KRLCNAHETLIWCAKHKNSK-VSFNYKTMKYLNNDKQEKSVWQIPICIGNERLKDAQGKK 189

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE    YI  A 
Sbjct: 190 VHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDSFYIKEAA 249

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KR+ S +   +  +T L  +   P++  +LL+ + L++ G  L ++       V  +G +
Sbjct: 250 KRLNSTRDKSDF-ITNLELETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQVLENGQV 308

Query: 323 ISGTEL-GSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
                   SIH++ AK       NGW F+Y     +   ++ LR + +++
Sbjct: 309 RDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQRD 358


>gi|261837505|gb|ACX97271.1| type II m6A methylase [Helicobacter pylori 51]
          Length = 359

 Score =  324 bits (831), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 162/351 (46%), Positives = 221/351 (62%), Gaps = 3/351 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF SF+ YD
Sbjct: 11  IIEGDCLEKLKDFPDRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKFGSFKEYD 70

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   WL  C+R+LK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSNP+PNF G
Sbjct: 71  TFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSNPVPNFAG 130

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +R  NAHETLIW +    +K  +FNY  +K  N D Q +S W IPIC G+ERL++  G+K
Sbjct: 131 KRLCNAHETLIWCAKHKNSK-VSFNYKTMKYLNNDKQEKSVWQIPICIGNERLKDAQGKK 189

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +H TQKPEALL +I++S TKP DIILDPFFG+GT+GAVAK + R FIGIE    YI  A 
Sbjct: 190 VHSTQKPEALLKKIILSVTKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDSFYIKEAA 249

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L ++       V  +G +
Sbjct: 250 KRLNNTRDKSDF-ITNLDLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQVLENGQV 308

Query: 323 ISGTEL-GSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
                   SIH++ AK       NGW F+Y     +   ++ LR + +KE 
Sbjct: 309 RDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKEF 359


>gi|317181339|dbj|BAJ59123.1| adenine specific DNA methyltransferase [Helicobacter pylori F57]
          Length = 359

 Score =  324 bits (831), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 161/351 (45%), Positives = 221/351 (62%), Gaps = 3/351 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF SF+ YD
Sbjct: 11  IIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKFGSFKEYD 70

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   WL  C+R+LK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSNP+PNF G
Sbjct: 71  TFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSNPVPNFAG 130

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +R  NAHETLIW +    +K  +FNY  +K  N D Q +S W IPIC G+ERL++  G+K
Sbjct: 131 KRLCNAHETLIWCAKHKNSK-VSFNYKTMKYLNNDKQEKSVWQIPICIGNERLKDAQGKK 189

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE    YI    
Sbjct: 190 VHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDSFYIKEVA 249

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L ++       V  +G +
Sbjct: 250 KRLNNTRDKSDF-ITNLELETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQVLENGQV 308

Query: 323 ISGTEL-GSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
                   SIH++ AK       NGW F+Y     +   ++ LR + +KE 
Sbjct: 309 RDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKEF 359


>gi|15645965|ref|NP_208144.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
           pylori 26695]
 gi|2314521|gb|AAD08395.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
           pylori 26695]
          Length = 359

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 162/350 (46%), Positives = 221/350 (63%), Gaps = 3/350 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF SF+ YD
Sbjct: 11  IIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDYWDKFGSFKEYD 70

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           AF   WL  C+R+LK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSNP+PNF G
Sbjct: 71  AFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSNPVPNFAG 130

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +R  NAHETLIW +    +K   FNY  +K  N D Q +S W IPIC G+ERL++  G+K
Sbjct: 131 KRLCNAHETLIWCAKHKNSK-VAFNYKTMKYLNNDKQEKSVWQIPICMGNERLKDAQGKK 189

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE    YI  A 
Sbjct: 190 VHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDSFYIKEAA 249

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L +        V  +G +
Sbjct: 250 KRLNNTRDKSDF-ITNLDLETKPPKIPMSLLISKQLLKIGDFLYSPNKEKICQVLENGQV 308

Query: 323 ISGTEL-GSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
                   SIH++ AK       NGW F+Y     +   ++ LR + +K+
Sbjct: 309 RDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKD 358


>gi|308062636|gb|ADO04524.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
           pylori Cuz20]
          Length = 359

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 162/351 (46%), Positives = 221/351 (62%), Gaps = 3/351 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF SF+ YD
Sbjct: 11  IIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKFGSFKEYD 70

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   WL  C+RVLK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSNP+PNF G
Sbjct: 71  TFCLGWLKECQRVLKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSNPVPNFAG 130

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +R  NAHETLIW +    +K  +FNY  +K  N   Q +S W IPIC G+ERL++  G+K
Sbjct: 131 KRLCNAHETLIWCAKHKNSK-VSFNYKTMKYLNNGKQEKSVWQIPICIGNERLKDAQGKK 189

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE    YI  A 
Sbjct: 190 VHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDSFYIKEAA 249

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L ++       V  +G +
Sbjct: 250 KRLNNTRDKSDF-ITNLVLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQVLENGQV 308

Query: 323 ISGTEL-GSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
                   SIH++ AK       NGW F+Y     +   ++ LR + +KE 
Sbjct: 309 RDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKEF 359


>gi|317179845|dbj|BAJ57631.1| adenine specific DNA methyltransferase [Helicobacter pylori F32]
          Length = 359

 Score =  323 bits (827), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 161/351 (45%), Positives = 221/351 (62%), Gaps = 3/351 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF SF+ YD
Sbjct: 11  IIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKFGSFKEYD 70

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   WL  C+R+LK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSNP+PNF G
Sbjct: 71  TFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSNPVPNFAG 130

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +R  NAHETLIW +    +K  +FNY  +K  N   Q +S W IPIC G+ERL++  G+K
Sbjct: 131 KRLCNAHETLIWCAKHKNSK-VSFNYKTMKYLNNGKQEKSVWQIPICIGNERLKDAQGKK 189

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE    YI  A 
Sbjct: 190 VHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRHFIGIEKDSFYIKEAA 249

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L ++       V  +G +
Sbjct: 250 KRLNNTRDKSDF-ITNLDLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQVLENGQV 308

Query: 323 ISGTEL-GSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
                   SIH++ AK       NGW F+Y     +   ++ LR + +KE 
Sbjct: 309 RDNENYETSIHKMSAKCLNKANHNGWKFFYAYYQNQFLLLDELRYICQKEF 359


>gi|315586043|gb|ADU40424.1| site-specific DNA-methyltransferase (adenine-specific)
           [Helicobacter pylori 35A]
          Length = 359

 Score =  321 bits (823), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 160/351 (45%), Positives = 221/351 (62%), Gaps = 3/351 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G+ +  L+  P +SVD IFADPPY +Q   +L R + +    V D WDKF SF+ YD
Sbjct: 11  IIEGDCLEKLKDFPDRSVDFIFADPPYFMQTERELKRFEGTKFQGVEDHWDKFGSFKEYD 70

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   WL  C+R+LK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSNP+PNF G
Sbjct: 71  TFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSNPVPNFAG 130

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +R  NAHETLIW +    +K  +FNY  +K  N D Q +S W IPIC G+ERL++  G+K
Sbjct: 131 KRLCNAHETLIWCAKHKNSK-VSFNYKTMKYLNNDKQEKSVWQIPICIGNERLKDAQGKK 189

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE    YI  A 
Sbjct: 190 VHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDSFYIKEAA 249

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L ++       V  +G +
Sbjct: 250 KRLNNTRDKSDF-ITNLDLEAKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQVLENGQV 308

Query: 323 ISGTEL-GSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
                   SIH++ AK       NGW F+Y     +   ++ LR + +K+ 
Sbjct: 309 RDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKDF 359


>gi|38906136|gb|AAR27819.1| adenine DNA methyltransferase [Staphylococcus sp. L1]
          Length = 350

 Score =  320 bits (819), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 159/346 (45%), Positives = 224/346 (64%), Gaps = 5/346 (1%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDKFSSFE 79
           + I++G+ I  L+ + + S+DLIFADPPYN+Q+ G+L R + S  + V+ +SWDKF S +
Sbjct: 7   NSILQGDCIEKLKLIESNSIDLIFADPPYNMQIQGELTRVNGSSFNGVSNESWDKFDSIK 66

Query: 80  AYDAFTRAWLLACRRVLKP-NGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           AY  F R WL+ C+R+LK  N ++W+IGSY NI  IG +LQ L FW++NDI+W+KSNP P
Sbjct: 67  AYKDFCRKWLIECQRILKSKNSSIWIIGSYQNIHIIGDLLQELGFWLINDIIWKKSNPTP 126

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRG +F NA ETL+WA+PS K K YTFNY  +K  N   QM S W IP+ SGSERL++ 
Sbjct: 127 NFRGTKFTNAQETLLWATPSKKTK-YTFNYKTMKNINNGKQMTSIWKIPVASGSERLKDV 185

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G KLH TQKPE LL  I++SSTK GD ILDPF G+GT+  ++KKL R++IGIE  + YI
Sbjct: 186 EGNKLHQTQKPEKLLYNIIISSTKKGDTILDPFLGTGTTATISKKLGRNYIGIEQDKKYI 245

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
             A +RI +   + +  +  +  K+   RV F  LVE G I   + +        A +  
Sbjct: 246 HYAEQRIKNQVVIDDDYVNAVFDKKL-IRVPFKKLVEEGFIDKNEYIYFNNTEEYAVISD 304

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTL 364
           D  L+   +  SIH +   + G E  NGWN+WY ++  +++   +L
Sbjct: 305 DKELLYNGK-HSIHSLAGILKGLERANGWNYWYVKRNNKIYFYRSL 349


>gi|294155798|ref|YP_003560182.1| adenine-specific DNA modification methyltransferase [Mycoplasma
           crocodyli MP145]
 gi|291599976|gb|ADE19472.1| adenine-specific DNA modification methyltransferase [Mycoplasma
           crocodyli MP145]
          Length = 375

 Score =  291 bits (746), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 155/371 (41%), Positives = 222/371 (59%), Gaps = 18/371 (4%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            E K+ +I  +SI  ++ L   S+DLIFADPPY ++  G L R + +  D   D WDKF+
Sbjct: 1   MELKNILINDDSIEYMKSLDENSIDLIFADPPYWMRTTGTLKRVEGTNFDGCNDEWDKFN 60

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           S + Y  FT+ WL+ C+R+LK +G+++VIG    I+ IG ++Q L+FW++NDI+W KSNP
Sbjct: 61  SLKDYKEFTKKWLIECKRILKKDGSIFVIGGMQCIYTIGAIMQELDFWLINDIIWHKSNP 120

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN------------EDVQMRSDW 184
            PNF+G R  N+HET+IWA+ S K+K  TFNY   K  N            E  QM S W
Sbjct: 121 TPNFKGTRLNNSHETIIWAAKSIKSK-VTFNYKTAKELNNENIEISKFTKGERKQMGSVW 179

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
             PICSG ERL++++  KLH TQKPEALL RI+  S+K GD ILDPF G+ T+GA+AKK+
Sbjct: 180 KFPICSGLERLKDEEYNKLHSTQKPEALLYRIIAISSKIGDTILDPFAGTMTTGAMAKKM 239

Query: 245 RRSFIGIEMKQDYIDIATKRIASVQPL-GNIELTVLTGKRTEPRVAFNLLVERGLIQPGQ 303
            R+ I IE    Y     KR+   + L G+IE ++   K T  +V F  L+ +  ++ G 
Sbjct: 240 GRNCIMIEKDLKYFTHGKKRVDFTKMLIGDIEKSIFDNKPT--KVHFKDLISKNYLKVGD 297

Query: 304 ILTNAQGNISATVCADGTLISGTELGSIHRVGAKVS--GSETCNGWNFWYFEKLGELHSI 361
             TN   +  AT+  DG L    E+  IH   AK +   ++  NG+++WY  +   L  +
Sbjct: 298 KFTNLSNDDYATLRDDGKLYYNNEVLDIHTCAAKFANKNADRINGFDYWYVVRNNHLVFL 357

Query: 362 NTLRILVRKEL 372
           N +R   RK++
Sbjct: 358 NDIREKARKDI 368


>gi|83682424|emb|CAJ31338.1| hypothetical protein [Helicobacter pylori]
          Length = 315

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 147/316 (46%), Positives = 198/316 (62%), Gaps = 3/316 (0%)

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
           L R + +    V D WDKF SFE YD F   WL  C+R+LK NG++ VIGS+ NIFRIG 
Sbjct: 1   LKRFEGTKFQGVEDHWDKFGSFEEYDTFCLGWLKECQRILKDNGSICVIGSFQNIFRIGF 60

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
            LQNL FWILNDIVW KSNP+PNF G+R  NAHETLIW +    +K  TFNY  +K  N 
Sbjct: 61  HLQNLGFWILNDIVWHKSNPVPNFAGKRLCNAHETLIWCAKHKNSK-VTFNYKTMKYLNN 119

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
           D Q +S W IPIC G+ERL++  G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT
Sbjct: 120 DKQEKSVWQIPICMGNERLKDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGT 179

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
           +GAVAK + R FIGIE    YI  A KR+ S +   +  +T L  +   P++  +LL+ +
Sbjct: 180 TGAVAKSMNRYFIGIEKDSFYIKEAAKRLNSARDKSDF-ITNLDLETKPPKIPMSLLISK 238

Query: 297 GLIQPGQILTNAQGNISATVCADGTLISGTEL-GSIHRVGAKVSGSETCNGWNFWYFEKL 355
            L++ G  L ++       V  +G +        SIH++ AK       NGW F+Y    
Sbjct: 239 QLLKIGDFLYSSNKERICQVLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQ 298

Query: 356 GELHSINTLRILVRKE 371
            +   ++ LR + +++
Sbjct: 299 NQFLLLDELRYICQRD 314


>gi|183508442|ref|ZP_02689152.2| DNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|182675852|gb|EDT87757.1| DNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697]
          Length = 363

 Score =  289 bits (740), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 152/358 (42%), Positives = 216/358 (60%), Gaps = 7/358 (1%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN--GQLYRPDHSLVDAVTDSWDKFS 76
           +K+KI+ G +  ++++LP K+ D  F DPPY LQ N   +LYR + +  +   D WDKF 
Sbjct: 3   YKNKILVGETTLIMKELPEKTFDFCFTDPPYFLQTNENKKLYRVEGTKYEGTNDEWDKFD 62

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           S E+Y  FT+ WL    R+LK +GT+ VI     I+ IG +L+ L FWI+NDI+W+KSNP
Sbjct: 63  SIESYKKFTKCWLSEVMRLLKDDGTICVISGMQTIYEIGNILKELGFWIINDIIWQKSNP 122

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
            PNF G R  N+HETLIWA  S  +K YTFNY   K  N   QM S W   +CSG+ERL+
Sbjct: 123 TPNFMGSRLNNSHETLIWAKKSKNSK-YTFNYKTGKYLNNGKQMGSVWNFSVCSGNERLK 181

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           +++G KLH TQKPE+LL RI+   TK GD++LDPF G+ T+ AVAKK  R+F  IE  + 
Sbjct: 182 DENGLKLHNTQKPESLLYRIITLFTKKGDLVLDPFGGTMTTAAVAKKTGRNFTMIEKDEK 241

Query: 257 YIDIATKRIASVQP-LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
           Y+     RI ++   +G +E +    K    RV+   ++  G  + G+   N+ G  +  
Sbjct: 242 YVKYGLARINNISAKIGVVENSFFDQKPI--RVSMFEMISDGYFKLGEYFINSNGEKAKL 299

Query: 316 VCADGTLISGTELGSIHRVGAKVSGSE-TCNGWNFWYFEKLGELHSINTLRILVRKEL 372
             A+G L    E+ S+H V AK+ G E   N +N+ + E+ GE+ SIN +R   R+ L
Sbjct: 300 AKANGWLEYQGEINSMHEVAAKMIGRERRVNAFNYLFVERDGEIISINKIRENYRQHL 357


>gi|313678807|ref|YP_004056547.1| site-specific DNA-methyltransferase (adenine-specific) [Mycoplasma
           bovis PG45]
 gi|312950107|gb|ADR24702.1| site-specific DNA-methyltransferase (adenine-specific) [Mycoplasma
           bovis PG45]
          Length = 374

 Score =  273 bits (697), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 151/365 (41%), Positives = 214/365 (58%), Gaps = 19/365 (5%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II  + I  L++LP  S+DLIFADPPY ++ +  L R + +  + V D WDKF S E Y 
Sbjct: 9   IINADCIDALKQLPDNSIDLIFADPPYWMRTSNTLLRVEGTKFNGVEDEWDKFESNEDYA 68

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FT+ WL  C RVLK NG+ WVIG    I+ IG ++Q L FWI+ND++W K+NP PNF+G
Sbjct: 69  KFTKNWLSECYRVLKKNGSFWVIGGMQCIYTIGGIMQELGFWIINDVIWHKTNPTPNFKG 128

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV---------QMRSDWLIPICSGSE 193
            R QN+HETLIWA+ +  +K YTFNY   K  N +V         Q+ S W I + +G+E
Sbjct: 129 TRLQNSHETLIWATKNQSSK-YTFNYKTAKELNINVADYNKGNRKQLGSVWSISVVNGNE 187

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           RL++ +G KLH TQKPE LL +I+  S+K  DI+LDPF G+ T+G VAK+  R +I IE 
Sbjct: 188 RLKDNEGIKLHSTQKPEELLYKIINISSKINDIVLDPFAGTMTTGKVAKQTGRKYIMIEQ 247

Query: 254 KQDYIDIATKRIASV-QPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPG-QILTNAQGN 311
            + Y    T RI    + +G+IEL     K    +V    ++E   +  G Q       +
Sbjct: 248 DEKYCHYGTNRIEKTKEKIGDIELATFDIKPL--KVGLKDMIENSFLHIGEQFYLKNINH 305

Query: 312 ISATVCADGTLI--SGTELGSIHRVGAKVSGSET--CNGWNFWYFEKLGELHSINTLRIL 367
            +  + +DG L   +G  L  IH   A++S  +    NG+++WY  +  +L SIN +R L
Sbjct: 306 KNVYLNSDGKLTDDNGQTL-DIHSGAAQLSNKKAHRVNGFDYWYVIRENKLVSINEIREL 364

Query: 368 VRKEL 372
            R+ L
Sbjct: 365 YREHL 369


>gi|291320655|ref|YP_003515920.1| modification methylase [Mycoplasma agalactiae]
 gi|290752991|emb|CBH40967.1| Modification methylase [Mycoplasma agalactiae]
          Length = 374

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 144/366 (39%), Positives = 213/366 (58%), Gaps = 21/366 (5%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II  + I  L+K+P  S+DLIFADPPY ++ +  L+R + +  + V D WDKF S + Y 
Sbjct: 9   IINADCIEALKKIPDNSIDLIFADPPYWMRTSKTLFRVEGTKFNGVEDEWDKFDSNDDYV 68

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FT+ WL  C RVLKPNG+ WVIG    I+ IG ++Q+L FWI+ND++W K+NP PNF+G
Sbjct: 69  QFTKKWLSECHRVLKPNGSFWVIGGMQCIYTIGGLMQDLGFWIINDVIWHKTNPTPNFKG 128

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV---------QMRSDWLIPICSGSE 193
            R QN+HETLIWA+ + K+K YTFNY   K  N +V         Q+ S W I + +GSE
Sbjct: 129 TRLQNSHETLIWATKNQKSK-YTFNYKTAKELNINVADYNKGNRKQLGSVWSISVVNGSE 187

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           RL++ +G KLH TQKPE LL +I+  ++K  DI+LDPF G+ T+G +AK+  R +I IE 
Sbjct: 188 RLKDNEGLKLHSTQKPEELLYKIININSKINDIVLDPFAGTMTTGKIAKQTGRKYIMIEQ 247

Query: 254 KQDYIDIATKRIASV-QPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPG-QILTNAQGN 311
            + Y      RI    + +G+IEL     K    +V    ++    +  G Q       +
Sbjct: 248 DEKYCHYGANRIEKTKEKIGDIELATFDIKPL--KVDLKDMINDNFLHLGEQFYLKNINH 305

Query: 312 ISATVCADGTLISGTELGSIHRVGAKVS-----GSETCNGWNFWYFEKLGELHSINTLRI 366
            +  + +DG L    E   +H + +K +      +   NG+N+W+  +   + SI+ +R 
Sbjct: 306 KNVYLNSDGKLTDDNE--EVHDIHSKAALLLNKKASRVNGFNYWHVMRDNRIVSIDEIRN 363

Query: 367 LVRKEL 372
           L R+ L
Sbjct: 364 LYREYL 369


>gi|257456468|ref|ZP_05621664.1| DNA methylase [Treponema vincentii ATCC 35580]
 gi|257446128|gb|EEV21175.1| DNA methylase [Treponema vincentii ATCC 35580]
          Length = 372

 Score =  269 bits (687), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 151/367 (41%), Positives = 213/367 (58%), Gaps = 23/367 (6%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAY 81
           II GN I  L+K+ A S++LIFADPPY ++++G L R + +  D   D WD +F S + Y
Sbjct: 6   IINGNCIEELKKIEANSINLIFADPPYWMRVSGVLKRVEGTDYDGCADEWDNQFESLDDY 65

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             FTR WL  C RVL PNG++WVIG    I+ IG  +Q + +W++NDI+W K+NP PNF 
Sbjct: 66  IEFTRNWLKECYRVLSPNGSMWVIGGMQCIYSIGNAMQEIGYWLINDIIWYKTNPTPNFM 125

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV------------QMRSDWLIPIC 189
           G R  N+HETLIWA+ S KAK YTF+Y   K  N D             QM S W  P+C
Sbjct: 126 GTRLNNSHETLIWATKSQKAK-YTFHYKTAKELNTDTVLVSDYEKGIRKQMGSIWRFPVC 184

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           SG+ER+++  G+KLH TQKP ALL RI+   +  GD +LDPF G+ T+GA A +  R+FI
Sbjct: 185 SGNERIKDDAGKKLHSTQKPFALLYRIVAICSNIGDTVLDPFGGTFTTGAAAIQCGRNFI 244

Query: 250 GIEMKQDYIDIATKRIASVQPL-GNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNA 308
           GI+  + Y     KR++  + + GNIE      K    +V F  L++   + P +     
Sbjct: 245 GIDASELYCKYGEKRLSETKEMIGNIEKATFDIKPI--KVDFIDLIKNNFLLPDEKFFLK 302

Query: 309 QGNISATVCADGT--LISGTELGSIHRVGAKVSGSETC---NGWNFWYFEKLGELHSINT 363
             +  A + +DG   L S   +  IH+ GA + G++     NG++FWY E+  +  SI  
Sbjct: 303 NSDSFAILKSDGKIELPSKNIVTDIHK-GAAILGNKKAARVNGFDFWYVERNNKRKSIKD 361

Query: 364 LRILVRK 370
           +R   RK
Sbjct: 362 IREDYRK 368


>gi|148377930|ref|YP_001256806.1| modification methylase [Mycoplasma agalactiae PG2]
 gi|148291976|emb|CAL59368.1| Modification methylase [Mycoplasma agalactiae PG2]
          Length = 376

 Score =  269 bits (687), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 145/366 (39%), Positives = 212/366 (57%), Gaps = 21/366 (5%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II  + I  L+ LP  S+DLIFADPPY ++ +  L+R + +  + V D WDKF S + Y 
Sbjct: 9   IINADCIEALKVLPDNSIDLIFADPPYWMRTSKTLFRVEGTKFNGVEDEWDKFDSNDDYV 68

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FT+ WL  C RVLKPNG+ WVIG    I+ IG ++Q+L FWI+ND++W K+NP PNF+G
Sbjct: 69  QFTKKWLSECHRVLKPNGSFWVIGGMQCIYTIGGLMQDLGFWIINDVIWHKTNPTPNFKG 128

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV---------QMRSDWLIPICSGSE 193
            R QN+HETLIWA+ + K+K YTFNY   K  N +V         Q+ S W I + +GSE
Sbjct: 129 TRLQNSHETLIWATKNQKSK-YTFNYKTAKELNINVADYNKGSRNQLGSVWSISVVNGSE 187

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           RL++ +G KLH TQKPE LL +I+  S+K  DI+LDPF G+ T+G +AK+  R +I IE 
Sbjct: 188 RLKDNEGLKLHSTQKPEELLYKIINISSKINDIVLDPFAGTMTTGKIAKQTGRKYIMIEQ 247

Query: 254 KQDYIDIATKRIASV-QPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPG-QILTNAQGN 311
            + Y      RI    + +G+IEL V   K    +V    ++    +  G Q       +
Sbjct: 248 DEKYCHYGANRIEKTKEKIGDIELAVFDIKPL--KVGLKDMINDNFLHLGEQFYLKNINH 305

Query: 312 ISATVCADGTLISGTELGSIHRVGAKVS-----GSETCNGWNFWYFEKLGELHSINTLRI 366
            +  + +DG L      G +H + +K +      +   NG+++W   +   + SI+ +R 
Sbjct: 306 KNVYLNSDGKLTDDN--GEVHDIHSKAALLLNKKASRVNGFDYWNVMRDNRIVSIDEIRN 363

Query: 367 LVRKEL 372
           L R+ L
Sbjct: 364 LYREYL 369


>gi|241888632|ref|ZP_04775939.1| DNA methylase [Gemella haemolysans ATCC 10379]
 gi|241864655|gb|EER69030.1| DNA methylase [Gemella haemolysans ATCC 10379]
          Length = 258

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 110/243 (45%), Positives = 156/243 (64%), Gaps = 6/243 (2%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G++  V+EK+ ++S+D+IFADPPY L  +G        +V      WDK SSFE    F 
Sbjct: 15  GDTFEVIEKIKSESIDMIFADPPYFLSNDG-FSNSGGKVVSVNKGDWDKISSFEEKHNFN 73

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
           R W+   +RVLKPNGT+W+ G+ HNI+ +G  L+   F ILN+I W+K+NP PN   R F
Sbjct: 74  REWIRKAKRVLKPNGTIWISGTLHNIYSVGMALEQEGFKILNNITWQKTNPAPNLSCRYF 133

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
            ++ ET++WA  + K   + +NYD +K  N   QM+  W  P+   SE+   K     HP
Sbjct: 134 THSTETILWARKADKYARHYYNYDLMKEINNGKQMKDVWTGPLTKISEKWAGK-----HP 188

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           TQKPE LL RI+++ST+ GD +LDPF GSGT+G VAK+L R F GI+ K++Y+DIA +R+
Sbjct: 189 TQKPEYLLERIILASTEEGDYVLDPFVGSGTTGVVAKRLGRKFAGIDFKEEYLDIAKRRL 248

Query: 266 ASV 268
            +V
Sbjct: 249 EAV 251


>gi|289167373|ref|YP_003445642.1| DNA adenine methyltransferase, (adenine-specific methyltransferase
           DpnIIB) [Streptococcus mitis B6]
 gi|322377535|ref|ZP_08052026.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sp. M334]
 gi|288906940|emb|CBJ21774.1| DNA adenine methyltransferase, (adenine-specific methyltransferase
           DpnIIB) [Streptococcus mitis B6]
 gi|321281735|gb|EFX58744.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sp. M334]
          Length = 263

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 112/248 (45%), Positives = 156/248 (62%), Gaps = 8/248 (3%)

Query: 20  KDKII--KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           KDK+I    ++  +L K+  +S+D+IFADPPY L  NG +      +V      WDK SS
Sbjct: 20  KDKMILVHADTFKLLSKMKPESMDMIFADPPYFLS-NGGISNSGGQVVSVDKGDWDKISS 78

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           FE    F R W+   + VLKPNGT+W+ GS HNI+ +G  L+   F ILN+I W+K+NP 
Sbjct: 79  FEEKHEFNRKWIRLAKEVLKPNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKTNPA 138

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PN   R F ++ ET++WA  + K   + +NYD +K  N+  QM+  W   +   +E+   
Sbjct: 139 PNLSCRYFTHSTETILWARKNDKKARHYYNYDLMKELNDGKQMKDVWTGALTKKAEKWAG 198

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K     HPTQKPE LL RI+++STK GD ILDPF GSGT+G VAK+L R FIGI+ +++Y
Sbjct: 199 K-----HPTQKPEYLLERIILASTKEGDYILDPFVGSGTTGVVAKRLGRRFIGIDAEKEY 253

Query: 258 IDIATKRI 265
           + IA KR+
Sbjct: 254 LKIAKKRL 261


>gi|322392398|ref|ZP_08065859.1| modification methylase BabI [Streptococcus peroris ATCC 700780]
 gi|321144933|gb|EFX40333.1| modification methylase BabI [Streptococcus peroris ATCC 700780]
          Length = 265

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 112/252 (44%), Positives = 157/252 (62%), Gaps = 8/252 (3%)

Query: 20  KDKII--KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           KDK+I    ++  +L K+  +S+D+IFADPPY L  NG +      +V      WDK SS
Sbjct: 20  KDKMILVHSDTFKLLSKMKPESMDMIFADPPYFLS-NGGISNSGGQVVSVDKGDWDKISS 78

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           FE    F R W+   + VLKPNGT+W+ GS HNI+ +G  L+   F ILN+I W+K+NP 
Sbjct: 79  FEEKHEFNRKWIRLAKEVLKPNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKTNPA 138

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PN   R F ++ ET++WA  + K   + +NYD +K  N+  QM+  W   +   +E+   
Sbjct: 139 PNLSCRYFTHSTETILWARKNDKKARHYYNYDLMKELNDGKQMKDVWTGALTKKAEKWAG 198

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K     HPTQKPE LL RI+++STK GD ILDPF GSGT+G VAK+L R FIGI+ +++Y
Sbjct: 199 K-----HPTQKPEYLLERIILASTKEGDYILDPFVGSGTTGVVAKRLGRRFIGIDAEKEY 253

Query: 258 IDIATKRIASVQ 269
           + IA KR+   +
Sbjct: 254 LKIAKKRLEYTE 265


>gi|322375761|ref|ZP_08050273.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sp. C300]
 gi|321279469|gb|EFX56510.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sp. C300]
          Length = 270

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 112/248 (45%), Positives = 156/248 (62%), Gaps = 8/248 (3%)

Query: 20  KDKII--KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           KDK+I    ++  +L K+  +S+D+IFADPPY L  NG +      +V      WDK SS
Sbjct: 20  KDKMILVHADTFKLLSKMKPESMDMIFADPPYFLS-NGGISNSGGQVVSVDKGDWDKISS 78

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           FE    F R W+   + VLKPNGT+W+ GS HNI+ +G  L+   F ILN+I W+K+NP 
Sbjct: 79  FEEKHEFNRKWIRLAKEVLKPNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKTNPA 138

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PN   R F ++ ET++WA  + K   + +NYD +K  N+  QM+  W   +   +E+   
Sbjct: 139 PNLSCRYFTHSTETILWARKNDKKARHYYNYDLMKELNDGKQMKDVWTGALTKKAEKWAG 198

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K     HPTQKPE LL RI+++STK GD ILDPF GSGT+G VAK+L R FIGI+ +++Y
Sbjct: 199 K-----HPTQKPEYLLERIILASTKEGDYILDPFVGSGTTGVVAKRLGRRFIGIDAEKEY 253

Query: 258 IDIATKRI 265
           + IA +RI
Sbjct: 254 LKIAKQRI 261


>gi|307705510|ref|ZP_07642364.1| modification methylase DpnIIB [Streptococcus mitis SK597]
 gi|307620968|gb|EFO00051.1| modification methylase DpnIIB [Streptococcus mitis SK597]
          Length = 253

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 112/252 (44%), Positives = 157/252 (62%), Gaps = 8/252 (3%)

Query: 20  KDKII--KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           KDK+I    ++  +L K+  +S+D+IFADPPY L  NG +      +V      WDK SS
Sbjct: 8   KDKMILVHADTFKLLSKMKPESMDMIFADPPYFLS-NGGISNSGGQVVSVDKGDWDKISS 66

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           FE    F R W+   + VLKPNGT+W+ GS HNI+ +G  L+   F ILN+I W+K+NP 
Sbjct: 67  FEEKHEFNRKWIRLAKEVLKPNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKTNPA 126

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PN   R F ++ ET++WA  + K   + +NYD +K  N+  QM+  W   +   +E+   
Sbjct: 127 PNLSCRYFTHSTETILWARKNDKKARHYYNYDLMKELNDGKQMKDVWTGALTKKAEKWAG 186

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K     HPTQKPE LL RI+++STK GD ILDPF GSGT+G VAK+L R FIGI+ +++Y
Sbjct: 187 K-----HPTQKPEYLLERIILASTKEGDYILDPFVGSGTTGVVAKRLGRRFIGIDAEKEY 241

Query: 258 IDIATKRIASVQ 269
           + IA KR+   +
Sbjct: 242 LKIARKRLEYTE 253


>gi|14327902|ref|NP_116732.1| LlaDCHIB [Lactococcus lactis]
 gi|1709051|sp|P50178|MTL22_LACLC RecName: Full=Modification methylase LlaDCHIB; Short=M.LlaDCHI B;
           Short=M.LlaDCHIB; AltName: Full=Adenine-specific
           methyltransferase LlaDCHIB; AltName: Full=M.LlaII B
 gi|794257|gb|AAB06312.1| LlaDCHIB [Lactococcus lactis]
          Length = 269

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 113/255 (44%), Positives = 158/255 (61%), Gaps = 12/255 (4%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
           E +N+I      ++  +S  +LEK+  +S+D+IFADPPY L  NG +      +V     
Sbjct: 19  EKENAI------LVHADSFKLLEKIKPESMDMIFADPPYFLS-NGGMSNSGGQIVSVDKG 71

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
            WDK SSFE    F R W+   R VLKPNGT+WV GS HNI+ +G  L+   F ILN+I 
Sbjct: 72  DWDKISSFEEKHDFNRRWIRLARLVLKPNGTIWVSGSLHNIYSVGMALEQEGFKILNNIT 131

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W+K+NP PN   R F ++ ET++WA  + K   + +NY+ +K  N+  QM+  W   +  
Sbjct: 132 WQKTNPAPNLSCRYFTHSTETILWARKNDKKSRHYYNYELMKEFNDGKQMKDVWTGSLTK 191

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
            SE+   K     HPTQKPE +L RI+++STK  D ILDPF GSGT+G VAK+L R FIG
Sbjct: 192 KSEKWAGK-----HPTQKPEYILERIILASTKENDYILDPFVGSGTTGVVAKRLGRKFIG 246

Query: 251 IEMKQDYIDIATKRI 265
           I+ +++Y+ IA KR+
Sbjct: 247 IDSEKEYLKIAKKRL 261


>gi|332199870|gb|EGJ13945.1| DNA methylase family protein [Streptococcus pneumoniae GA41317]
          Length = 256

 Score =  222 bits (565), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 108/245 (44%), Positives = 153/245 (62%), Gaps = 6/245 (2%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++  ++   L K+  +S+D+IFADPPY L  NG +      +V      WDK SSFE   
Sbjct: 13  LVHSDTFKFLSKMKPESMDMIFADPPYFLS-NGGISNSGGQVVSVDKGDWDKISSFEEKH 71

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R W+   + VLKPNGT+W+ GS HNI+ +G +L+   F ILN+I W+K+NP PN   
Sbjct: 72  EFNRKWIRLAKEVLKPNGTVWISGSLHNIYSVGMVLEQEGFKILNNITWQKTNPAPNLSC 131

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ ET++WA  + K   + +NYD +K  N+  QM+  W   +    E+   K    
Sbjct: 132 RYFTHSTETILWARKNDKKARHYYNYDLMKELNDGKQMKDVWTGSLTKKVEKWAGK---- 187

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE LL RI+++STK GD ILDPF GSGT+G VAK+L R FIGI+ +++Y+ IA 
Sbjct: 188 -HPTQKPEYLLERIILASTKEGDYILDPFVGSGTTGVVAKRLGRRFIGIDAEKEYLKIAR 246

Query: 263 KRIAS 267
           KR+ +
Sbjct: 247 KRLEA 251


>gi|13542231|ref|NP_111919.1| adenine-specific DNA methylase [Thermoplasma volcanium GSS1]
          Length = 278

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 111/268 (41%), Positives = 164/268 (61%), Gaps = 2/268 (0%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           M  + S  IN  + +  E KD ++ G+S+ ++ ++     DLIF DPPY LQ+  +  + 
Sbjct: 1   MPIEKSSRINGGKMNREEVKDSVLLGDSLEIMRRIDDCIYDLIFLDPPYYLQMTPKRLKR 60

Query: 61  --DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
             + S+   V + WD F SFEAYD+F  + L   +R++    T+W IG+YHNIFRIG ++
Sbjct: 61  WNNRSVPQTVREYWDAFPSFEAYDSFISSVLKEAKRLMSDTSTIWAIGTYHNIFRIGKIM 120

Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
           Q++ FWILND+VW K+NPMPN+ G RF N+ ETLIWA+   + K YT+N +  K      
Sbjct: 121 QDMGFWILNDVVWIKTNPMPNWLGVRFTNSTETLIWATKGKEQKNYTYNRNLAKEFGLGK 180

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
              + W++    G+ER+R+++ + +HP QKP  L+ RI++SSTK GD+ILDPF G GT+G
Sbjct: 181 TANNVWVMKTSRGNERVRDENRKSVHPAQKPLELMKRIILSSTKEGDLILDPFAGVGTTG 240

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIA 266
             A  L R+F  IE    Y      R +
Sbjct: 241 VAASMLGRNFTLIEKDPVYYRAMLSRFS 268


>gi|127389|sp|P09358|MTD22_STRPN RecName: Full=Modification methylase DpnIIB; Short=M.DpnIIB;
           AltName: Full=Adenine-specific methyltransferase DpnIIB;
           AltName: Full=M.DpnII 2
 gi|6978344|gb|AAA88581.2| DNA adenine methyltransferase [Streptococcus pneumoniae]
          Length = 268

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 108/245 (44%), Positives = 152/245 (62%), Gaps = 6/245 (2%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++  ++   L K+  +S+D+IFADPPY L  NG +      +V      WDK SSFE   
Sbjct: 25  LVHSDTFKFLSKMKPESMDMIFADPPYFLS-NGGISNSGGQVVSVDKGDWDKISSFEEKH 83

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R W+   + VLKPNGT+W+ GS HNI+ +G  L+   F ILN+I W+K+NP PN   
Sbjct: 84  EFNRKWIRLAKEVLKPNGTVWISGSLHNIYSVGMALEQEGFKILNNITWQKTNPAPNLSC 143

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ ET++WA  + K   + +NYD +K  N+  QM+  W   +    E+   K    
Sbjct: 144 RYFTHSTETILWARKNDKKARHYYNYDLMKELNDGKQMKDVWTGSLTKKVEKWAGK---- 199

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE LL RI+++STK GD ILDPF GSGT+G VAK+L R FIGI+ +++Y+ IA 
Sbjct: 200 -HPTQKPEYLLERIILASTKEGDYILDPFVGSGTTGVVAKRLGRRFIGIDAEKEYLKIAR 258

Query: 263 KRIAS 267
           KR+ +
Sbjct: 259 KRLEA 263


>gi|148998713|ref|ZP_01826151.1| putative adenine-specific DNA methylase [Streptococcus pneumoniae
           SP11-BS70]
 gi|149006496|ref|ZP_01830195.1| putative adenine-specific DNA methylase [Streptococcus pneumoniae
           SP18-BS74]
 gi|168491835|ref|ZP_02715978.1| DNA methylase [Streptococcus pneumoniae CDC0288-04]
 gi|168574962|ref|ZP_02720925.1| DNA methylase [Streptococcus pneumoniae MLV-016]
 gi|169832858|ref|YP_001695216.1| DNA methylase [Streptococcus pneumoniae Hungary19A-6]
 gi|194398425|ref|YP_002038438.1| DNA adenine methyltransferase DpnII [Streptococcus pneumoniae G54]
 gi|225857437|ref|YP_002738948.1| DNA methylase [Streptococcus pneumoniae P1031]
 gi|225859611|ref|YP_002741121.1| DNA methylase [Streptococcus pneumoniae 70585]
 gi|307068464|ref|YP_003877430.1| DNA modification methylase [Streptococcus pneumoniae AP200]
 gi|307128045|ref|YP_003880076.1| DNA methylase [Streptococcus pneumoniae 670-6B]
 gi|147755407|gb|EDK62456.1| putative adenine-specific DNA methylase [Streptococcus pneumoniae
           SP11-BS70]
 gi|147761794|gb|EDK68757.1| putative adenine-specific DNA methylase [Streptococcus pneumoniae
           SP18-BS74]
 gi|168995360|gb|ACA35972.1| DNA methylase [Streptococcus pneumoniae Hungary19A-6]
 gi|183573905|gb|EDT94433.1| DNA methylase [Streptococcus pneumoniae CDC0288-04]
 gi|183578786|gb|EDT99314.1| DNA methylase [Streptococcus pneumoniae MLV-016]
 gi|194358092|gb|ACF56540.1| DNA adenine methyltransferase DpnII [Streptococcus pneumoniae G54]
 gi|225720270|gb|ACO16124.1| DNA methylase [Streptococcus pneumoniae 70585]
 gi|225724476|gb|ACO20328.1| DNA methylase [Streptococcus pneumoniae P1031]
 gi|301794813|emb|CBW37269.1| DNA methylase [Streptococcus pneumoniae INV104]
 gi|306410001|gb|ADM85428.1| DNA modification methylase [Streptococcus pneumoniae AP200]
 gi|306485107|gb|ADM91976.1| DNA methylase [Streptococcus pneumoniae 670-6B]
 gi|332073000|gb|EGI83481.1| DNA methylase family protein [Streptococcus pneumoniae GA17545]
 gi|332201259|gb|EGJ15330.1| DNA methylase family protein [Streptococcus pneumoniae GA47901]
          Length = 256

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 108/245 (44%), Positives = 152/245 (62%), Gaps = 6/245 (2%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++  ++   L K+  +S+D+IFADPPY L  NG +      +V      WDK SSFE   
Sbjct: 13  LVHSDTFKFLSKMKPESMDMIFADPPYFLS-NGGISNSGGQVVSVDKGDWDKISSFEEKH 71

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R W+   + VLKPNGT+W+ GS HNI+ +G  L+   F ILN+I W+K+NP PN   
Sbjct: 72  EFNRKWIRLAKEVLKPNGTVWISGSLHNIYSVGMALEQEGFKILNNITWQKTNPAPNLSC 131

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ ET++WA  + K   + +NYD +K  N+  QM+  W   +    E+   K    
Sbjct: 132 RYFTHSTETILWARKNDKKARHYYNYDLMKELNDGKQMKDVWTGSLTKKVEKWAGK---- 187

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE LL RI+++STK GD ILDPF GSGT+G VAK+L R FIGI+ +++Y+ IA 
Sbjct: 188 -HPTQKPEYLLERIILASTKEGDYILDPFVGSGTTGVVAKRLGRRFIGIDAEKEYLKIAR 246

Query: 263 KRIAS 267
           KR+ +
Sbjct: 247 KRLEA 251


>gi|24378989|ref|NP_720944.1| putative adenine-specific DNA methylase [Streptococcus mutans
           UA159]
 gi|24376880|gb|AAN58250.1|AE014896_6 putative adenine-specific DNA methylase [Streptococcus mutans
           UA159]
          Length = 269

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 110/254 (43%), Positives = 158/254 (62%), Gaps = 8/254 (3%)

Query: 17  FEWKDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           + +K+K  ++  ++   LEK+ ++S+D+IFADPPY L  NG        +V      WDK
Sbjct: 17  YYYKNKTILVHADTFQFLEKMKSESIDMIFADPPYFLS-NGGFSNSGGQVVSVDKGDWDK 75

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            +S E    F R W+   ++VLK NGT+W+ GS HNI+ +G  L+   F ILN+I W+K+
Sbjct: 76  AASLEEKHEFNRRWIRLAKKVLKSNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKT 135

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           NP+PN   R F ++ ET++WA  + K   + +NYD +K  N+  QM+  W   +   SE+
Sbjct: 136 NPVPNLSCRYFTHSTETILWARKNDKKSKHYYNYDLMKKINDGKQMKDVWTGSLTKKSEK 195

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
              K     HPTQKPE LL RI+++STK GD ILDPF GSGT+G VAKKL R FIGI+ +
Sbjct: 196 WAGK-----HPTQKPEYLLERIILASTKKGDYILDPFVGSGTTGVVAKKLGRRFIGIDSE 250

Query: 255 QDYIDIATKRIASV 268
           ++Y+ IA  R+  V
Sbjct: 251 REYLRIARTRLERV 264


>gi|14325665|dbj|BAB60568.1| DNA adenine modification methylase [Thermoplasma volcanium GSS1]
          Length = 265

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 107/251 (42%), Positives = 157/251 (62%), Gaps = 2/251 (0%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP--DHSLVDAVTDSWDKF 75
           E KD ++ G+S+ ++ ++     DLIF DPPY LQ+  +  +   + S+   V + WD F
Sbjct: 5   EVKDSVLLGDSLEIMRRIDDCIYDLIFLDPPYYLQMTPKRLKRWNNRSVPQTVREYWDAF 64

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SFEAYD+F  + L   +R++    T+W IG+YHNIFRIG ++Q++ FWILND+VW K+N
Sbjct: 65  PSFEAYDSFISSVLKEAKRLMSDTSTIWAIGTYHNIFRIGKIMQDMGFWILNDVVWIKTN 124

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           PMPN+ G RF N+ ETLIWA+   + K YT+N +  K         + W++    G+ER+
Sbjct: 125 PMPNWLGVRFTNSTETLIWATKGKEQKNYTYNRNLAKEFGLGKTANNVWVMKTSRGNERV 184

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           R+++ + +HP QKP  L+ RI++SSTK GD+ILDPF G GT+G  A  L R+F  IE   
Sbjct: 185 RDENRKSVHPAQKPLELMKRIILSSTKEGDLILDPFAGVGTTGVAASMLGRNFTLIEKDP 244

Query: 256 DYIDIATKRIA 266
            Y      R +
Sbjct: 245 VYYRAMLSRFS 255


>gi|325696288|gb|EGD38179.1| modification methylase BabI [Streptococcus sanguinis SK160]
          Length = 265

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 108/243 (44%), Positives = 150/243 (61%), Gaps = 6/243 (2%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++  ++   L K+  +S+D+IFADPPY L  NG       ++V      WDK S  E   
Sbjct: 25  LVHADTFDFLSKMKPESMDMIFADPPYFLS-NGGFSNSGGNIVSVDKGDWDKVSGLEEKH 83

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R WL   R +LKPNGT+W+ GS HNI+ +G  L+   F ILN+I W+KSNP PN   
Sbjct: 84  DFNRRWLRLVRPILKPNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKSNPAPNLSC 143

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ ET++WA    K   + +NYD +K  N   QM+  W+ P+   +E+   K    
Sbjct: 144 RYFTHSTETILWARKDDKKAKHYYNYDLMKDINGGKQMKDVWIGPLTKKAEKWAGK---- 199

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE LL RI+++STK  D ILDPF GSGT+G VAK+L R FIGI+ ++DY++IA 
Sbjct: 200 -HPTQKPEYLLERIILASTKENDYILDPFVGSGTTGVVAKRLGRKFIGIDAEKDYLEIAK 258

Query: 263 KRI 265
           +R+
Sbjct: 259 RRL 261


>gi|160940911|ref|ZP_02088251.1| hypothetical protein CLOBOL_05803 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436155|gb|EDP13922.1| hypothetical protein CLOBOL_05803 [Clostridium bolteae ATCC
           BAA-613]
          Length = 265

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 108/248 (43%), Positives = 154/248 (62%), Gaps = 6/248 (2%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+  G+ + +L K+  +SVD+IFADPPY L  NG +      +V     SWD+   F+  
Sbjct: 19  KLYLGDCLELLRKMKPESVDMIFADPPYFLSNNG-ITCQGGRMVSVNKASWDEGGDFKEN 77

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            AF R W+  CRRVLKP GT+W+ G+ HNI+ IG  LQ   + I+N+I W+K+NP PN  
Sbjct: 78  HAFNRRWIRMCRRVLKPGGTIWISGTLHNIYSIGMALQQERYKIINNITWKKTNPPPNLA 137

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R F ++ ET++WA    K   + FNY+ +K  N   QM+  W   +   SE+   +   
Sbjct: 138 CRCFTHSTETILWARKDEKKARHLFNYEQMKQMNGGKQMKDVWEGNLTRPSEKWAGR--- 194

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKPE LL RI+++STK GD++LDPF GSGT+G V+ K  R FIGI+  ++Y+DIA
Sbjct: 195 --HPTQKPEYLLERIILASTKKGDVVLDPFCGSGTTGVVSGKYGRQFIGIDNNEEYLDIA 252

Query: 262 TKRIASVQ 269
            +R+  +Q
Sbjct: 253 KRRLDQIQ 260


>gi|290580993|ref|YP_003485385.1| putative adenine-specific DNA methylase [Streptococcus mutans
           NN2025]
 gi|254997892|dbj|BAH88493.1| putative adenine-specific DNA methylase [Streptococcus mutans
           NN2025]
          Length = 257

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 107/246 (43%), Positives = 153/246 (62%), Gaps = 6/246 (2%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++  ++   LEK+ ++S+D+IFADPPY L  NG        ++      WDK +S E   
Sbjct: 13  LVHADTFQFLEKMKSESIDMIFADPPYFLS-NGGFSNSGGQVISVDKGDWDKAASLEEKH 71

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R W+   ++VLK NGT+W+ GS HNI+ +G  L+   F ILN+I W+K+NP+PN   
Sbjct: 72  EFNRRWIRLAKKVLKSNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKTNPVPNLSC 131

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ ET++WA  + K   + +NYD +K  N+  QM+  W   +   SE+   K    
Sbjct: 132 RYFTHSTETILWARKNDKKSKHYYNYDLMKKINDGKQMKDVWTGSLTKKSEKWAGK---- 187

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE LL RI+++STK GD ILDPF GSGT+G VAKKL R FIGI+ +++Y+ IA 
Sbjct: 188 -HPTQKPEYLLERIILASTKKGDYILDPFVGSGTTGVVAKKLGRRFIGIDSEREYLRIAR 246

Query: 263 KRIASV 268
            R+  V
Sbjct: 247 TRLERV 252


>gi|332362311|gb|EGJ40111.1| modification methylase BabI [Streptococcus sanguinis SK1056]
          Length = 265

 Score =  219 bits (558), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 107/243 (44%), Positives = 150/243 (61%), Gaps = 6/243 (2%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++  ++   L ++  +S+D+IFADPPY L  NG       ++V      WDK S  E   
Sbjct: 25  LVHADTFDFLSQMKPESMDMIFADPPYFLS-NGGFSNSGGNIVSVDKGDWDKVSGLEEKH 83

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R WL   R +LKPNGT+W+ GS HNI+ +G  L+   F ILN+I W+KSNP PN   
Sbjct: 84  DFNRQWLRLVRPILKPNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKSNPAPNLSC 143

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ ET++WA    K   + +NYD +K  N   QM+  W+ P+   +E+   K    
Sbjct: 144 RYFTHSTETILWARKDDKKAKHYYNYDLMKDINGGKQMKDVWIGPLTKKAEKWAGK---- 199

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE LL RI+++STK  D ILDPF GSGT+G VAK+L R FIGI+ ++DY++IA 
Sbjct: 200 -HPTQKPEYLLERIILASTKENDYILDPFVGSGTTGVVAKRLGRKFIGIDAEKDYLEIAK 258

Query: 263 KRI 265
           +R+
Sbjct: 259 RRL 261


>gi|125718516|ref|YP_001035649.1| modification methylase DpnIIB [Streptococcus sanguinis SK36]
 gi|125498433|gb|ABN45099.1| Modification methylase DpnIIB, putative [Streptococcus sanguinis
           SK36]
          Length = 267

 Score =  219 bits (558), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 107/243 (44%), Positives = 150/243 (61%), Gaps = 6/243 (2%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++  ++   L ++  +S+D+IFADPPY L  NG       ++V      WDK S  E   
Sbjct: 25  LVHADTFDFLSQMKPESMDMIFADPPYFLS-NGGFSNSGGNIVSVDKGDWDKVSGLEEKH 83

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R WL   R +LKPNGT+W+ GS HNI+ +G  L+   F ILN+I W+KSNP PN   
Sbjct: 84  DFNRRWLRLVRPILKPNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKSNPAPNLSC 143

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ ET++WA    K   + +NYD +K  N   QM+  W+ P+   +E+   K    
Sbjct: 144 RYFTHSTETILWARKDDKKAKHYYNYDLMKDINGGKQMKDVWIGPLTKKAEKWAGK---- 199

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE LL RI+++STK  D ILDPF GSGT+G VAK+L R FIGI+ ++DY++IA 
Sbjct: 200 -HPTQKPEYLLERIILASTKENDYILDPFVGSGTTGVVAKRLGRKFIGIDAEKDYLEIAK 258

Query: 263 KRI 265
           +R+
Sbjct: 259 RRL 261


>gi|324991367|gb|EGC23300.1| modification methylase BabI [Streptococcus sanguinis SK353]
 gi|325687054|gb|EGD29077.1| modification methylase BabI [Streptococcus sanguinis SK72]
          Length = 267

 Score =  219 bits (558), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 107/243 (44%), Positives = 150/243 (61%), Gaps = 6/243 (2%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++  ++   L ++  +S+D+IFADPPY L  NG       ++V      WDK S  E   
Sbjct: 25  LVHADTFDFLSQMKPESMDMIFADPPYFLS-NGGFSNSGGNIVSVDKGDWDKVSGLEEKH 83

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R WL   R +LKPNGT+W+ GS HNI+ +G  L+   F ILN+I W+KSNP PN   
Sbjct: 84  DFNRRWLRLVRPILKPNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKSNPAPNLSC 143

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ ET++WA    K   + +NYD +K  N   QM+  W+ P+   +E+   K    
Sbjct: 144 RYFTHSTETILWARKDDKKAKHYYNYDLMKDINGGKQMKDVWIGPLTKKAEKWAGK---- 199

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE LL RI+++STK  D ILDPF GSGT+G VAK+L R FIGI+ ++DY++IA 
Sbjct: 200 -HPTQKPEYLLERIILASTKENDYILDPFVGSGTTGVVAKRLGRKFIGIDAEKDYLEIAK 258

Query: 263 KRI 265
           +R+
Sbjct: 259 RRL 261


>gi|327470495|gb|EGF15951.1| modification methylase BabI [Streptococcus sanguinis SK330]
          Length = 265

 Score =  219 bits (557), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 107/243 (44%), Positives = 150/243 (61%), Gaps = 6/243 (2%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++  ++   L ++  +S+D+IFADPPY L  NG       ++V      WDK S  E   
Sbjct: 25  LVHADTFDFLSQMKPESMDMIFADPPYFLS-NGGFSNSGGNIVSVDKGDWDKVSGLEEKH 83

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R WL   R +LKPNGT+W+ GS HNI+ +G  L+   F ILN+I W+KSNP PN   
Sbjct: 84  DFNRRWLRLVRPILKPNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKSNPAPNLSC 143

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ ET++WA    K   + +NYD +K  N   QM+  W+ P+   +E+   K    
Sbjct: 144 RYFTHSTETILWARKDDKKAKHYYNYDLMKDINGGKQMKDVWIGPLTKKAEKWAGK---- 199

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE LL RI+++STK  D ILDPF GSGT+G VAK+L R FIGI+ ++DY++IA 
Sbjct: 200 -HPTQKPEYLLERIILASTKENDYILDPFVGSGTTGVVAKRLGRKFIGIDAEKDYLEIAK 258

Query: 263 KRI 265
           +R+
Sbjct: 259 RRL 261


>gi|48290858|dbj|BAB63435.2| DNA adenine methylase M.Ssu4109IB [Streptococcus suis]
          Length = 271

 Score =  219 bits (557), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 105/243 (43%), Positives = 152/243 (62%), Gaps = 6/243 (2%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++  ++   L+K+  +S+D+IFADPPY L  NG +      +V      WDK +S E   
Sbjct: 25  LVHADTFEFLDKMKPESMDMIFADPPYFLS-NGGISNSGGQVVSVDKGDWDKVNSLEEKH 83

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R W+   + VLKPNGT+W+ GS+HNI+ +G  L+   F ILN+I W+K+NP PN   
Sbjct: 84  EFNRKWIRLAKNVLKPNGTIWISGSFHNIYSVGMALEQEGFKILNNITWQKTNPAPNLSC 143

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ ET++WA    K   + +NY+ +K  N+  QM+  W+  +   SE+   K    
Sbjct: 144 RYFTHSTETILWARKDDKKARHYYNYELMKELNDGKQMKDVWVGGLTKKSEKWAGK---- 199

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE LL RI+++ST+ GD ILDPF GSGT+G VAK+L R FIGI+ ++DY+ IA 
Sbjct: 200 -HPTQKPEYLLERIILASTREGDYILDPFVGSGTTGVVAKRLGRKFIGIDAERDYLKIAR 258

Query: 263 KRI 265
            R+
Sbjct: 259 TRL 261


>gi|322372954|ref|ZP_08047490.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sp. C150]
 gi|321277996|gb|EFX55065.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sp. C150]
          Length = 270

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 108/251 (43%), Positives = 155/251 (61%), Gaps = 8/251 (3%)

Query: 17  FEWKDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           + +KDK  ++  ++   L+K+  +S+D+IFADPPY L  NG        +V      WDK
Sbjct: 5   YYYKDKAILVHADTFEFLKKIKPESMDMIFADPPYFLS-NGGFSNSGGKVVSVNKGDWDK 63

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
             + E    F R W+   ++VLKPNGT+WV GS+HNI+ +G  L+   F ILN+I W+K+
Sbjct: 64  IDTLEEKHDFNRNWIRLAKKVLKPNGTIWVSGSFHNIYSVGMALEQEGFKILNNITWQKT 123

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           NP PN   R F ++ ET++WA  + K   + +NY+ +K  N   QM+  W   +   +E+
Sbjct: 124 NPAPNLSCRYFTHSTETVLWARKNDKKAKHYYNYELMKELNGGKQMKDVWTGALTKKAEK 183

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
              K     HPTQKPE LL RI+++STKP D ILDPF GSGT+G VAK+L R FIGI+ +
Sbjct: 184 WAGK-----HPTQKPEYLLERIILASTKPNDYILDPFVGSGTTGVVAKRLGRYFIGIDSE 238

Query: 255 QDYIDIATKRI 265
           +DY+ IA  R+
Sbjct: 239 KDYLKIAQARL 249


>gi|12082202|dbj|BAB20829.1| DNA adenine methylase M.SsuMB [Streptococcus suis]
 gi|15281320|dbj|BAB63414.1| DNA adenine methylase M.Ssu11318IB [Streptococcus suis]
 gi|15281326|dbj|BAB63419.1| DNA adenine methylase M.Ssu4961IB [Streptococcus suis]
 gi|15281332|dbj|BAB63424.1| DNA adenine methylase M.Ssu8074IB [Streptococcus suis]
 gi|15281338|dbj|BAB63429.1| DNA adenine methylase M.Ssu2479IB [Streptococcus suis]
          Length = 271

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 105/243 (43%), Positives = 150/243 (61%), Gaps = 6/243 (2%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++  ++   L K+  +S+D+IFADPPY L  NG +      +V      WDK  S E   
Sbjct: 25  LVHADTFEFLNKMKPESMDMIFADPPYFLS-NGGISNSGGQVVSVDKGDWDKVDSLEEKH 83

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R W+   + VLKPNGT+W+ GS+HNI+ +G  L+   F ILN+I W+K+NP PN   
Sbjct: 84  EFNRKWIRLAKNVLKPNGTIWISGSFHNIYSVGMALEQEGFKILNNITWQKTNPAPNLSC 143

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ ET++WA    K   + +NY+ +K  N+  QM+  W+  +   SE+   K    
Sbjct: 144 RYFTHSTETILWARKDDKKARHYYNYELMKELNDGKQMKDVWVGGLTKKSEKWAGK---- 199

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE LL RI+++ST+ GD ILDPF GSGT+G VAK+L R FIGI+ ++DY+ IA 
Sbjct: 200 -HPTQKPEYLLERIILASTQEGDYILDPFVGSGTTGVVAKRLGRKFIGIDAERDYLKIAR 258

Query: 263 KRI 265
            R+
Sbjct: 259 TRL 261


>gi|295399896|ref|ZP_06809877.1| DNA methylase N-4/N-6 domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312111585|ref|YP_003989901.1| DNA methylase N-4/N-6 domain protein [Geobacillus sp. Y4.1MC1]
 gi|294978299|gb|EFG53896.1| DNA methylase N-4/N-6 domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311216686|gb|ADP75290.1| DNA methylase N-4/N-6 domain protein [Geobacillus sp. Y4.1MC1]
          Length = 267

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 112/256 (43%), Positives = 155/256 (60%), Gaps = 9/256 (3%)

Query: 16  IFEWKDKI--IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           IF ++D +  I GN I  L +L   SVD+IFADPPY L  +G +      +V      WD
Sbjct: 13  IFYYQDNLLLINGNCIDWLNRLEKNSVDMIFADPPYFLS-SGGITCHSGKMVSVDKGEWD 71

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           K S+     +F + WL AC+RVLK  GT+W+ G+ HNI+ IG  L  L + ILN+I W K
Sbjct: 72  KPSTLNEIHSFNKEWLYACKRVLKDGGTIWISGTLHNIYSIGFALNELEYKILNNITWYK 131

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
            N  PN   R F ++ ET++WA    K   Y FNY+ +K  N   QMR  W IP    SE
Sbjct: 132 KNASPNLSCRYFTHSTETILWARKGKKTSHY-FNYNLMKEMNGGKQMRDVWEIPTTKKSE 190

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           +   +     HPTQKP  LL RI+++STK  DI+LDPF GSGT+G VAKKL R +IGI++
Sbjct: 191 KAHGR-----HPTQKPIELLERIILASTKINDIVLDPFNGSGTTGVVAKKLNRRYIGIDI 245

Query: 254 KQDYIDIATKRIASVQ 269
           +++Y+++  KR+ + +
Sbjct: 246 EKEYLELTIKRLEATE 261


>gi|223932377|ref|ZP_03624380.1| DNA methylase N-4/N-6 domain protein [Streptococcus suis 89/1591]
 gi|330831883|ref|YP_004400708.1| DNA adenine methylase M.SsuMB [Streptococcus suis ST3]
 gi|223899058|gb|EEF65416.1| DNA methylase N-4/N-6 domain protein [Streptococcus suis 89/1591]
 gi|329306106|gb|AEB80522.1| DNA adenine methylase M.SsuMB [Streptococcus suis ST3]
          Length = 259

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 105/243 (43%), Positives = 150/243 (61%), Gaps = 6/243 (2%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++  ++   L K+  +S+D+IFADPPY L  NG +      +V      WDK  S E   
Sbjct: 13  LVHADTFEFLNKMKPESMDMIFADPPYFLS-NGGISNSGGQVVSVDKGDWDKVDSLEEKH 71

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R W+   + VLKPNGT+W+ GS+HNI+ +G  L+   F ILN+I W+K+NP PN   
Sbjct: 72  EFNRKWIRLAKNVLKPNGTIWISGSFHNIYSVGMALEQEGFKILNNITWQKTNPAPNLSC 131

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ ET++WA    K   + +NY+ +K  N+  QM+  W+  +   SE+   K    
Sbjct: 132 RYFTHSTETILWARKDDKKARHYYNYELMKELNDGKQMKDVWVGGLTKKSEKWAGK---- 187

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE LL RI+++ST+ GD ILDPF GSGT+G VAK+L R FIGI+ ++DY+ IA 
Sbjct: 188 -HPTQKPEYLLERIILASTQEGDYILDPFVGSGTTGVVAKRLGRKFIGIDAERDYLKIAR 246

Query: 263 KRI 265
            R+
Sbjct: 247 TRL 249


>gi|296126987|ref|YP_003634239.1| DNA methylase N-4/N-6 domain protein [Brachyspira murdochii DSM
           12563]
 gi|296018803|gb|ADG72040.1| DNA methylase N-4/N-6 domain protein [Brachyspira murdochii DSM
           12563]
          Length = 259

 Score =  215 bits (548), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 114/256 (44%), Positives = 158/256 (61%), Gaps = 16/256 (6%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           IIKG+ + VL+ +   S+D+IFADPPYNL  NG        +V      WD+   FE   
Sbjct: 5   IIKGDCLEVLDTIEENSIDMIFADPPYNLSNNGITCHAG-KMVSVNKGEWDRSLGFEEDT 63

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           AF  AW+  CRRVLK  GT+W+ G+ H+I++ G +L+ L F+ILNDIVW K N  PN   
Sbjct: 64  AFHEAWISKCRRVLKDEGTIWISGTNHSIYKCGYILEKLGFYILNDIVWYKPNAAPNLSC 123

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAAN-ED-------VQMRSDWLIPICSGSER 194
           + F ++HET++WA  +  AK Y +NYD +K  + ED        QMRS W I   S SE+
Sbjct: 124 KVFTHSHETILWAKKNKNAKHY-YNYDLMKNMDFEDDKLKSKGKQMRSVWSISAPSKSEK 182

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL-RRSFIGIEM 253
           +  K     HPTQKP  LL+RI+++STK  D ILDPF GSGT+ A  K +  R++IGIE+
Sbjct: 183 IHGK-----HPTQKPLKLLTRIILASTKENDTILDPFNGSGTTAAACKIIGNRNYIGIEI 237

Query: 254 KQDYIDIATKRIASVQ 269
            ++YI++  KR+  + 
Sbjct: 238 DENYIELTNKRLNDID 253


>gi|210620631|ref|ZP_03292155.1| hypothetical protein CLOHIR_00098 [Clostridium hiranonis DSM 13275]
 gi|210155240|gb|EEA86246.1| hypothetical protein CLOHIR_00098 [Clostridium hiranonis DSM 13275]
          Length = 267

 Score =  215 bits (548), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 108/249 (43%), Positives = 155/249 (62%), Gaps = 9/249 (3%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS--- 76
           K K+I G++ S+L K+  +S+D+IFADPPY L  NG +      +V     SWD  +   
Sbjct: 18  KSKLILGDTFSILSKIKKESIDMIFADPPYFLSNNG-ITCSGGKMVSVNKGSWDTLNLGN 76

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           S      F R W+  C+RVLKPNGT+W+ G+ HNI+ IG  L+   F I+N+I W+K+NP
Sbjct: 77  SVSEKHKFNRKWIKMCKRVLKPNGTIWISGTMHNIYSIGMALEQEGFKIINNITWQKTNP 136

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
            PN   R F ++ ET++WA  + K   + FNY+ +K  N   QM+  W     +GS   +
Sbjct: 137 PPNLACRCFTHSTETVLWAKKNDKKSKHLFNYNDMKEMNGGKQMKDVW-----TGSLTKK 191

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           ++  E  HPTQKPE LL RI++SST+   IILDPF GSGT+G +AK+  R FIGI+ + +
Sbjct: 192 SEKSEGKHPTQKPEYLLERIVISSTEENQIILDPFCGSGTTGVIAKRYGRKFIGIDNEIE 251

Query: 257 YIDIATKRI 265
           Y++I  KR+
Sbjct: 252 YLNITKKRL 260


>gi|309801799|ref|ZP_07695917.1| DNA (cytosine-5-)-methyltransferase [Bifidobacterium dentium
           JCVIHMP022]
 gi|308221553|gb|EFO77847.1| DNA (cytosine-5-)-methyltransferase [Bifidobacterium dentium
           JCVIHMP022]
          Length = 261

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 102/245 (41%), Positives = 154/245 (62%), Gaps = 6/245 (2%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +++  G++ S+L K+  +SVD+IFADPPY L  NG +      +V      WDK +SFEA
Sbjct: 18  EELFLGDTFSLLPKMQPESVDMIFADPPYFLS-NGGISCHSGRMVSVDKGDWDKGASFEA 76

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
              F R W+  C+ VL PNGT+W+ G+ HNI+ +G  L+   F I+N+I W+K+NP PN 
Sbjct: 77  KHEFNRNWIRLCKTVLAPNGTIWISGTLHNIYSVGVALEQEGFKIINNITWQKTNPPPNL 136

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
             R F ++ ET++WA  + +   + FNY  +K  N   QM+  W   +    E++  K  
Sbjct: 137 ACRCFTHSTETVLWAQRNDRCSKHFFNYALMKEMNGGKQMKDVWTGSLTPKREKIEGK-- 194

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
              HPTQKP  LL RI++SST+PGD++LDPF GS T+G  A+KL R +IGI+ + +YI++
Sbjct: 195 ---HPTQKPLYLLERIILSSTEPGDLVLDPFCGSSTTGVAAQKLGRKYIGIDNEPEYIEL 251

Query: 261 ATKRI 265
           + +R+
Sbjct: 252 SKRRL 256


>gi|296274511|ref|YP_003657142.1| DNA methylase N-4/N-6 domain-containing protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296098685|gb|ADG94635.1| DNA methylase N-4/N-6 domain protein [Arcobacter nitrofigilis DSM
           7299]
          Length = 263

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 112/252 (44%), Positives = 150/252 (59%), Gaps = 16/252 (6%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           GN I +L+K+   S+D+IFADPPY L  NG +   +  +V      WDK    E    F 
Sbjct: 19  GNCIEILKKIKKDSIDMIFADPPYGLSNNG-ITCKNGKMVSVNKGEWDKSKGIEEDFKFH 77

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
             W+ AC+RVLKPNGT+W+ G+YH+I+  G  LQ   F +LN+I W K N  PN   + F
Sbjct: 78  NQWIKACQRVLKPNGTIWISGTYHSIYACGYALQKNKFKVLNEISWFKPNAAPNLSCKYF 137

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAA---------NEDVQMRSDWLIPICSGSERLR 196
             +HET+IWA      K +T+NY  +K           NED QMRS W I   S  E+L 
Sbjct: 138 TASHETIIWAIKESTQK-HTYNYKTMKHGDWHKKDIIKNEDKQMRSVWSIATPSKKEKLF 196

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
            K     HPTQKP  LL RI++SST   DIILDPF GS T+G VA +  R FIGI+M+++
Sbjct: 197 GK-----HPTQKPIKLLERIILSSTNENDIILDPFTGSSTTGVVALQNNRQFIGIDMEKE 251

Query: 257 YIDIATKRIASV 268
           Y++++ KRI ++
Sbjct: 252 YLNLSIKRIHNI 263


>gi|238917688|ref|YP_002931205.1| site-specific DNA-methyltransferase (adenine-specific) [Eubacterium
           eligens ATCC 27750]
 gi|238873048|gb|ACR72758.1| site-specific DNA-methyltransferase (adenine-specific) [Eubacterium
           eligens ATCC 27750]
          Length = 267

 Score =  209 bits (533), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 103/253 (40%), Positives = 154/253 (60%), Gaps = 10/253 (3%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS-- 77
           + +++ G+S  +L K+  +SVD+IFADPPY L  +G +      +V     SWDK S   
Sbjct: 17  QSQLVLGDSFKILTKMKPESVDMIFADPPYFLSNDG-ITCQGGKMVSVNKGSWDKLSESG 75

Query: 78  --FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
              E    F R W+  CR+VLKPNGT+W+ G+ HNI+ IG  L+   F I+N+I W+K+N
Sbjct: 76  TGVEEKHKFNRKWIKLCRKVLKPNGTIWISGTLHNIYSIGMALEQEGFKIINNITWQKTN 135

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P PN   R F ++ ET++WA  + K   + F+Y  +K  N   QM+  W   +   SE+ 
Sbjct: 136 PPPNLACRCFTHSTETILWAQKNDKKSRHFFDYQKMKEMNGGKQMKDVWTGALTKPSEKT 195

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
             K     HPTQKPE LL +I+++ST+ G +ILDPF GSGT+G  A +  R FIGI++ +
Sbjct: 196 EGK-----HPTQKPEYLLEKIVLASTEEGQVILDPFCGSGTTGVEAVRFGRKFIGIDVSE 250

Query: 256 DYIDIATKRIASV 268
           +Y++I+ +R+  V
Sbjct: 251 EYLEISKRRLEKV 263


>gi|291523889|emb|CBK89476.1| DNA modification methylase [Eubacterium rectale DSM 17629]
          Length = 270

 Score =  209 bits (532), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 102/252 (40%), Positives = 155/252 (61%), Gaps = 10/252 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS----S 77
           +++ G+S  +L K+  +SVD+IFADPPY L  +G +      +V     SWDK S    S
Sbjct: 19  QLVLGDSFKILTKMKPESVDMIFADPPYFLSNDG-ITCQGGKMVSVNKGSWDKLSESGTS 77

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E    F R W+  C++VLKPNGT+W+ G+ HNI+ IG  L+   F I+N+I W+K+NP 
Sbjct: 78  VEEKHKFNRKWIRLCKKVLKPNGTIWISGTLHNIYSIGMALEQEGFKIINNITWQKTNPP 137

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PN   R F ++ ET++WA  + K   + F+Y  +K  N   QM+  W   +   SE+   
Sbjct: 138 PNLACRCFTHSTETILWAKKNDKKSRHFFDYQKMKKMNGGKQMKDVWTGALTKPSEKTEG 197

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K     HPTQKPE LL +I+++ST+ G +ILDPF GSGT+G  A +  R F+GI++ ++Y
Sbjct: 198 K-----HPTQKPEYLLEKIVLASTEKGQVILDPFCGSGTTGVEAVRFGRKFVGIDVSEEY 252

Query: 258 IDIATKRIASVQ 269
           ++I+ +R+  V+
Sbjct: 253 LEISKRRLEKVK 264


>gi|166032271|ref|ZP_02235100.1| hypothetical protein DORFOR_01974 [Dorea formicigenerans ATCC
           27755]
 gi|166027994|gb|EDR46751.1| hypothetical protein DORFOR_01974 [Dorea formicigenerans ATCC
           27755]
          Length = 270

 Score =  209 bits (531), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 103/251 (41%), Positives = 154/251 (61%), Gaps = 10/251 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS----S 77
           ++I G+S  +L K+  +SVD+IFADPPY L  +G +      +V     SWDK S    S
Sbjct: 19  QLIVGDSFKILTKMEPESVDMIFADPPYFLSNDG-ITCQGGKMVSVNKGSWDKLSESGTS 77

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E    F R W+  C++VLKPNGT+W+ G+ HNI+ IG  L+   F I+N+I W+K+NP 
Sbjct: 78  VEEKHKFNRKWIKLCKKVLKPNGTIWISGTLHNIYSIGMALEQEGFKIINNITWQKTNPP 137

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PN   R F ++ ET++WA  + K   + F+Y  +K  N   QM+  W   +   SE+   
Sbjct: 138 PNLACRCFTHSTETILWAKKNDKKSRHFFDYQKMKEMNGGKQMKDVWTGALTKPSEKTEG 197

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K     HPTQKP+ LL +I+++ST+ G +ILDPF GSGT+G  A +  R FIGI++ ++Y
Sbjct: 198 K-----HPTQKPKYLLEKIVLASTEEGQVILDPFCGSGTTGVEAVRFGRKFIGIDVSEEY 252

Query: 258 IDIATKRIASV 268
           ++I+ +R+  V
Sbjct: 253 LEISKRRLEKV 263


>gi|19347659|gb|AAL86021.1| BsmIMA [Geobacillus stearothermophilus]
          Length = 275

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 116/272 (42%), Positives = 163/272 (59%), Gaps = 30/272 (11%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS--LV------DAVT 69
           EW + I     I  ++KLP  S+DL+ ADPPYNL   G+ ++ D+S  LV      + V 
Sbjct: 4   EWINTIQNTECIQSMKKLPDNSIDLVIADPPYNLSKGGK-WKWDNSKKLVGMGGNWNKVM 62

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
           ++WD  + FE Y  FT +WLL  +R+LKP G+LW+ G+YHN+  I  + Q L   I+N+I
Sbjct: 63  ENWDDMT-FEEYWEFTESWLLEVKRILKPTGSLWIFGTYHNMGIINVVCQKLGIEIINEI 121

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN--EDV------QMR 181
           +W K N  PN  GRRF  +HET++W     K + Y FNY+ +K A+  ED+      QMR
Sbjct: 122 IWYKRNAFPNLSGRRFTASHETILWCHVGQKKREYYFNYEYVKNASFPEDMLKSPGKQMR 181

Query: 182 SDWLIPICSGSERLRNKDGEKL----HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           + W IP         NK  ++L    HPTQKP  LL RI+++++K GDI L PF G G+ 
Sbjct: 182 TVWDIP--------NNKQKDELKFGKHPTQKPLRLLHRIILATSKEGDICLAPFSGVGSE 233

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
              AK+L R+FIG E+ ++Y DI+ KRI S Q
Sbjct: 234 CVAAKELGRNFIGFEINKEYYDISLKRIESTQ 265


>gi|187251096|ref|YP_001875578.1| DNA methylase N-4/N-6 domain-containing protein [Elusimicrobium
           minutum Pei191]
 gi|186971256|gb|ACC98241.1| DNA methylase N-4/N-6 domain protein [Elusimicrobium minutum
           Pei191]
          Length = 266

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 113/258 (43%), Positives = 156/258 (60%), Gaps = 15/258 (5%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+I GNSI V++  P +S D+IFADPPY L  NG               SWDK + F++ 
Sbjct: 14  KLILGNSIDVIKSFPDESCDMIFADPPYMLS-NGGFTVQSGKRASVNKGSWDKSNGFDSD 72

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F   W+  C+R+LK NGT+W+ G+YH+I++ G  LQ  N+ ILNDI W K N  PN  
Sbjct: 73  FEFHNNWIKECKRILKKNGTIWISGTYHSIYQCGFALQKNNYHILNDIAWFKPNAAPNLS 132

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAA--NED------VQMRSDWLIPICSGSE 193
            R F  +HETLIWA  +   K +TFNYD +K    +ED      +QMRS W I     SE
Sbjct: 133 CRFFTASHETLIWARKNKIGK-HTFNYDKVKNGIWSEDFLKKPNLQMRSVWAINTPKKSE 191

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           ++  K     HPTQKP  L+ RI++SSTK  D+ILDPF GS T+G  A   +R+FIGI++
Sbjct: 192 KVFGK-----HPTQKPFDLMRRIILSSTKENDLILDPFTGSSTTGLAATYYKRNFIGIDI 246

Query: 254 KQDYIDIATKRIASVQPL 271
           +Q Y++++ KR   ++ +
Sbjct: 247 EQKYLELSKKRYEQLRSM 264


>gi|212639032|ref|YP_002315552.1| DNA modification methylase [Anoxybacillus flavithermus WK1]
 gi|212560512|gb|ACJ33567.1| DNA modification methylase [Anoxybacillus flavithermus WK1]
          Length = 263

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 107/246 (43%), Positives = 146/246 (59%), Gaps = 7/246 (2%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +I+ + +  L+ +   S+ +IFADPPY L  NG +      +V      WDK    E  D
Sbjct: 21  LIQDDCLRALQYIQPSSIHMIFADPPYFLS-NGGISCKSGKIVRVDKGEWDKERDREKID 79

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   W+ AC+RVLK +GT+W+ G++HNI  +G  L  L F ILN IVW+K++P PN   
Sbjct: 80  EFNYRWIQACKRVLKEDGTIWITGTFHNIHSVGQALHQLGFKILNSIVWQKTDPPPNMSK 139

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++HE +IWA  SPK++ Y FNY+A+   N   QM   W IP     E+        
Sbjct: 140 RMFTHSHEYIIWAKKSPKSRHY-FNYEAMVKENNGKQMTDVWTIPHVPPHEKTFGN---- 194

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKP  LL+RI+++STK  DIILDPF GSGT+G  A  L R FIG+E +  +I +  
Sbjct: 195 -HPTQKPLQLLNRIIIASTKQNDIILDPFCGSGTTGVSALCLNRKFIGMERELSFIQLTK 253

Query: 263 KRIASV 268
           +RI SV
Sbjct: 254 RRIQSV 259


>gi|325294305|ref|YP_004280819.1| DNA methylase N-4/N-6 domain protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064753|gb|ADY72760.1| DNA methylase N-4/N-6 domain protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 291

 Score =  206 bits (523), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 111/248 (44%), Positives = 152/248 (61%), Gaps = 16/248 (6%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           ++++VL+K+P +SVD++FADPPYNL  +G         V      WD+   FE    F  
Sbjct: 17  DALNVLDKIPDESVDMVFADPPYNLSNDGFTCHAGKR-VSVNKGEWDRSQGFEKDFNFHY 75

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
            W+  C+R+LKPNGT+W+ G+YH+I+  G  LQ   + I+N+I W K N  PN   R F 
Sbjct: 76  QWIEKCKRILKPNGTIWISGTYHSIYLCGFSLQKQGWHIINEICWYKPNASPNLSCRMFT 135

Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAAN--EDV------QMRSDWLIPICSGSERLRNK 198
            +HETL+WA    +AK +TFNYD  K  +  ED+      QMRS W IP     E+   K
Sbjct: 136 ASHETLLWAKKKKEAK-HTFNYDLAKNGSWEEDLLKKPNKQMRSVWAIPTPKKWEKRYGK 194

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQKPE LL RI++ +TKPGDI+LDPF GSGT+G VA +  R F+GI+  ++Y+
Sbjct: 195 -----HPTQKPELLLKRIILLTTKPGDIVLDPFCGSGTTGVVAIRYGRRFVGIDFNEEYL 249

Query: 259 -DIATKRI 265
            D+A  RI
Sbjct: 250 KDLAIPRI 257


>gi|257456835|ref|ZP_05622019.1| DNA methylase [Treponema vincentii ATCC 35580]
 gi|257445841|gb|EEV20900.1| DNA methylase [Treponema vincentii ATCC 35580]
          Length = 304

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 112/255 (43%), Positives = 153/255 (60%), Gaps = 16/255 (6%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I   + + VLE+LP +S+D+IFADPPY L  +G   + +  +V      WDK    E   
Sbjct: 45  IFNIDCLEVLERLPDESIDMIFADPPYMLSNDGFTCQ-NGRMVSVNKGKWDKSCGLETDM 103

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F  AW+ ACRRVLKP GT+W+ G+YH+I++ G +LQ  NF ILNDI W K N  PN   
Sbjct: 104 QFHNAWIAACRRVLKPEGTIWISGTYHSIYQCGYLLQKNNFHILNDIAWFKPNAAPNLSC 163

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAA--NED------VQMRSDWLIPICSGSER 194
           R F  +HETLIWA    K+K +TFNYDA+K     ED       QMRS W IP     E+
Sbjct: 164 RFFTASHETLIWARKDKKSK-HTFNYDAMKNGFFPEDKLKKAHSQMRSVWSIPTPPAGEK 222

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL-RRSFIGIEM 253
              K     HPTQKP +LL RI+++ST    IILDPF G GT+G  +  + +R +IGIE+
Sbjct: 223 ELGK-----HPTQKPLSLLKRIILASTNDNAIILDPFNGGGTTGIASTIIGKRYYIGIEI 277

Query: 254 KQDYIDIATKRIASV 268
            ++Y ++  +++  +
Sbjct: 278 DKEYCELTKRKLMQI 292


>gi|269976527|ref|ZP_06183512.1| DNA methylase [Mobiluncus mulieris 28-1]
 gi|269935328|gb|EEZ91877.1| DNA methylase [Mobiluncus mulieris 28-1]
          Length = 277

 Score =  202 bits (514), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 102/247 (41%), Positives = 150/247 (60%), Gaps = 6/247 (2%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I  G++  +L ++   SVD+IFADPPY L  NG +       V     +WD+    E  
Sbjct: 23  RIFLGDAFEILARIAQSSVDMIFADPPYFLS-NGGISCSGGRQVSVNKGAWDRGMGTEEK 81

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F R W+  C+RVLK +G++WV G++HNI+ +G  L+   F ILN+I W+K NP PN  
Sbjct: 82  HGFNRRWVRQCKRVLKRDGSIWVSGTFHNIYSLGFALEQEGFKILNNITWQKLNPPPNLA 141

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R F ++ ET+IWA  + +   + F+Y  +K  N   QM+  W   +   SE++  K   
Sbjct: 142 CRCFTHSTETVIWARKNERKARHFFDYPLMKTLNGGKQMKDVWAGTLTPKSEKICGK--- 198

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKPE LL RI+++ST+ GD++LDPF GSGT+  VAK+L R  IGI+  ++Y++IA
Sbjct: 199 --HPTQKPEYLLERIILASTREGDLVLDPFVGSGTTAVVAKRLGRYSIGIDSVEEYLEIA 256

Query: 262 TKRIASV 268
            KR+A  
Sbjct: 257 GKRLAQT 263


>gi|307701788|ref|ZP_07638802.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
 gi|307613046|gb|EFN92301.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
          Length = 252

 Score =  202 bits (514), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 102/241 (42%), Positives = 148/241 (61%), Gaps = 6/241 (2%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G++  +L ++   SVD+IFADPPY L  NG +       V     +WDK    E    F 
Sbjct: 2   GDAFEILARIAQSSVDMIFADPPYFLS-NGGISCSGGRQVSVNKGAWDKGMGTEEKHGFN 60

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
           R W+  C+RVLK +G++WV G++HNI+ +G  L+   F ILN+I W+K NP PN   R F
Sbjct: 61  RRWVRQCKRVLKRDGSIWVSGTFHNIYSLGFALEQEGFKILNNITWQKLNPPPNLACRCF 120

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
            ++ ET+IWA  + +   + F+Y  +K  N   QM+  W   +   SE++  K     HP
Sbjct: 121 THSTETVIWARKNERKARHFFDYPLMKTLNGGKQMKDVWAGTLTPKSEKICGK-----HP 175

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           TQKPE LL RI+++ST+ GD++LDPF GSGT+  VAK+L R  IGI+  ++Y++IA KR+
Sbjct: 176 TQKPEYLLERIILASTREGDLVLDPFVGSGTTAVVAKRLGRYSIGIDSVEEYLEIAGKRL 235

Query: 266 A 266
           A
Sbjct: 236 A 236


>gi|300870838|ref|YP_003785709.1| DNA methylase N-4/N-6 domain-containing protein [Brachyspira
           pilosicoli 95/1000]
 gi|300688537|gb|ADK31208.1| DNA methylase N-4/N-6 domain protein [Brachyspira pilosicoli
           95/1000]
          Length = 260

 Score =  202 bits (514), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 110/258 (42%), Positives = 152/258 (58%), Gaps = 16/258 (6%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D +I GN + +L+ L   S+D+IFADPPYNL  NG         V      WD    F+ 
Sbjct: 2   DTLINGNCLEILDTLEENSIDMIFADPPYNLSNNGTTCHSGKR-VSVNKGEWDISLGFDQ 60

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
             AF   W+  CRRVLK NGT+W+ G+ H+I++ G +L+ L F+ILNDI W K N  PN 
Sbjct: 61  DVAFHETWISKCRRVLKDNGTIWISGTNHSIYKCGFILEKLGFYILNDIAWYKPNAAPNL 120

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN--------EDVQMRSDWLIPICSGS 192
               F ++HETLIWA  + KAK + +NYD +K  +        +  QMRS W I   + +
Sbjct: 121 SCNVFAHSHETLIWAKKNKKAKHF-YNYDLMKNLDFEKDKLKSKGKQMRSVWSISTPAKN 179

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG-AVAKKLRRSFIGI 251
           E++  K     HPTQKP  LL RI+++STK  D ILDPF GSGT+  A A    R++IGI
Sbjct: 180 EKIYGK-----HPTQKPIDLLIRIILASTKDNDTILDPFNGSGTTAVACAMIGNRNYIGI 234

Query: 252 EMKQDYIDIATKRIASVQ 269
           ++  +YI++  KRI  ++
Sbjct: 235 DIDNNYIELTKKRIKDIE 252


>gi|238022785|ref|ZP_04603211.1| hypothetical protein GCWU000324_02696 [Kingella oralis ATCC 51147]
 gi|237865988|gb|EEP67124.1| hypothetical protein GCWU000324_02696 [Kingella oralis ATCC 51147]
          Length = 262

 Score =  202 bits (513), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 103/237 (43%), Positives = 140/237 (59%), Gaps = 7/237 (2%)

Query: 31  VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
           +L+K P    D+IFADPPY L  NG     +  +V      WDK     A  AF   WL 
Sbjct: 33  ILDKYPNGCFDMIFADPPYFLS-NGGFTCQNGQMVSVNKGDWDKSQGMAADMAFYEEWLG 91

Query: 91  ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
            C  +LKPNG++WV G++HNI+ IG ++Q L + ILN+I W K NP PN   R F ++ E
Sbjct: 92  LCYALLKPNGSIWVCGTHHNIYLIGYLMQTLGYHILNNITWEKPNPPPNLSCRFFTHSTE 151

Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
           TL+WA    +AK +TF YD +KA N   QM+S W I   + SE+   K     HPTQKP 
Sbjct: 152 TLLWAKKGKRAK-HTFQYDVMKAQNGGKQMKSVWQIAPPAASEKTLGK-----HPTQKPL 205

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           ALL R + +++ P D I DPF GSGT+G  A K  R+F G E+  ++ ++A KR+ +
Sbjct: 206 ALLERCIQAASNPNDWIFDPFMGSGTTGVAALKHGRNFCGCEINDEFFELAKKRLQT 262


>gi|218961616|ref|YP_001741391.1| Modification methylase DpnIIB (Adenine-specific methyltransferase
           DpnIIB) (M.DpnIIB) (M.DpnII 2) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730273|emb|CAO81185.1| Modification methylase DpnIIB (Adenine-specific methyltransferase
           DpnIIB) (M.DpnIIB) (M.DpnII 2) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 263

 Score =  202 bits (513), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 102/248 (41%), Positives = 146/248 (58%), Gaps = 15/248 (6%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           GN + +L++L   S+D+IFADPPY L  +G +      +V      WD    F     F 
Sbjct: 19  GNCMEILKELEPNSIDMIFADPPYFLS-DGTITCKSGKMVSVKKGDWDLLDEFNNKSEFH 77

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
             W+  CR++LKP+GT+W+ G+YH+I++ G  LQ   F I+NDI W K N  PN   + F
Sbjct: 78  HKWISVCRQILKPSGTIWISGTYHSIYQCGYELQKQGFRIINDICWFKPNAAPNLTRKCF 137

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAAN--------EDVQMRSDWLIPICSGSERLRN 197
             +HET++WA   P  K   ++Y+ +K  +        +  QMRS W IP     E++  
Sbjct: 138 TASHETILWAIKDPLQKQ-KYHYELMKNTDWMGDIINKKGKQMRSVWCIPTTPAREKIHG 196

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K     HPTQKP ALL RI++SST  GD++LDPF GSGT+G VAKK  R++IGI++  DY
Sbjct: 197 K-----HPTQKPIALLERIILSSTDEGDLVLDPFNGSGTTGVVAKKYHRNYIGIDINIDY 251

Query: 258 IDIATKRI 265
           + +  +RI
Sbjct: 252 LKLTIERI 259


>gi|225076901|ref|ZP_03720100.1| hypothetical protein NEIFLAOT_01952 [Neisseria flavescens
           NRL30031/H210]
 gi|224951787|gb|EEG32996.1| hypothetical protein NEIFLAOT_01952 [Neisseria flavescens
           NRL30031/H210]
          Length = 271

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 100/235 (42%), Positives = 143/235 (60%), Gaps = 7/235 (2%)

Query: 31  VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
           +LEK P    D+IFADPPY L  +G     +  +V     +WDK     A   F   WL 
Sbjct: 40  ILEKHPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGMAADLEFYEEWLR 98

Query: 91  ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
            C  +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP PN   R F ++ E
Sbjct: 99  LCYALLKPNGTIWVCGTFHNIYLIGYLMQTIGYHILNNITWEKPNPPPNLSCRFFTHSTE 158

Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
           T++WA  + KAK +TF+Y+ +KA N+  QM+  W  P  + +E+   K     HPTQKP 
Sbjct: 159 TILWAKKNKKAK-HTFHYEMMKAQNDGKQMKCVWTFPPPNKTEKTFGK-----HPTQKPL 212

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
            LL R ++S++  GD+I DPF GSGT+G  A K  R F G E+++D+ ++A KR+
Sbjct: 213 PLLERCILSASNIGDLIFDPFMGSGTTGVAALKHDRKFCGCELEEDFFELAKKRL 267


>gi|218960496|ref|YP_001740271.1| Modification methylase DpnIIB (Adenine-specific methyltransferase
           DpnIIB) (M.DpnIIB) (M.DpnII 2) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729153|emb|CAO80064.1| Modification methylase DpnIIB (Adenine-specific methyltransferase
           DpnIIB) (M.DpnIIB) (M.DpnII 2) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 269

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 117/279 (41%), Positives = 164/279 (58%), Gaps = 20/279 (7%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+  G+++ ++++L +KS+DLIFADPPYNL     L      +      SWD        
Sbjct: 5   KLFNGDALEIIKQLQSKSIDLIFADPPYNLSGENHLTCKSGKIAKCDKGSWDHIDDI--- 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F + W+  C RVLK NGT+W+ G+ HN   IG +L+ LN WI+NDI+W K N  P  +
Sbjct: 62  DEFNKKWIEECIRVLKDNGTIWISGTLHNHPSIGVILKQLNLWIINDIIWFKPNAAPLIQ 121

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYD-ALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
             RF  + E LIW +   K+K Y FNY+ A++ AN   QMR+ W          L  +  
Sbjct: 122 KNRFVPSTE-LIWLAA--KSKQYYFNYEMAVRLANGK-QMRNLW---------ELSAEKH 168

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           + +HPT+KPE LL RI++  +K  DIILDPF GSGT+GAVAK+L R+F+GIE+ Q Y +I
Sbjct: 169 KTMHPTEKPEKLLERIVLIGSKQEDIILDPFMGSGTTGAVAKRLNRNFVGIEIDQTYYNI 228

Query: 261 ATKRIASVQPLGNIE--LTVLTGKRTEPRVAFNLLVERG 297
           A KRI +     N+   L  LT K T  ++ F   +E+ 
Sbjct: 229 AQKRIENTNVETNLVQFLEKLTHK-TSSQLDFYSTIEKS 266


>gi|325204847|gb|ADZ00301.1| Modification methylase LlaDCHIB [Neisseria meningitidis M01-240355]
          Length = 269

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 100/235 (42%), Positives = 143/235 (60%), Gaps = 7/235 (2%)

Query: 31  VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
           +LEK P    D+IFADPPY L  +G     +  +V     +WDK     A   F   WL 
Sbjct: 40  ILEKYPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGMAADLEFYEEWLR 98

Query: 91  ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
            C  +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP PN   R F ++ E
Sbjct: 99  LCYALLKPNGTIWVCGTFHNIYLIGYLMQTIGYHILNNITWEKPNPPPNLSCRFFTHSTE 158

Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
           T++WA  + KAK +TF+Y+ +KA N+  QM+  W  P  + +E+   K     HPTQKP 
Sbjct: 159 TILWAKKNKKAK-HTFHYEMMKAQNDGKQMKCVWTFPPPNKAEKTFGK-----HPTQKPL 212

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
            LL R ++S++  GD+I DPF GSGT+G  A K  R F G E+++D+ ++A KR+
Sbjct: 213 PLLERCILSASNIGDLIFDPFMGSGTTGVAALKHGRKFCGCELEEDFFELAKKRL 267


>gi|325131534|gb|EGC54241.1| DNA methylase [Neisseria meningitidis M6190]
          Length = 269

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 99/235 (42%), Positives = 144/235 (61%), Gaps = 7/235 (2%)

Query: 31  VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
           +LEK P    D+IF+DPPY L  +G     +  +V     +WDK     A   F   WL 
Sbjct: 40  ILEKYPNGCFDMIFSDPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGMAADLEFYEEWLR 98

Query: 91  ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
            C  +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP PN   R F ++ E
Sbjct: 99  LCYALLKPNGTIWVCGTFHNIYLIGYLMQTIGYHILNNITWEKPNPPPNLSCRFFTHSTE 158

Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
           T++WA  + KAK +TF+Y+ +KA N+  QM+  W  P  + +E+   K     HPTQKP 
Sbjct: 159 TILWAKKNKKAK-HTFHYEMMKAQNDGKQMKCVWTFPPPNKAEKTFGK-----HPTQKPL 212

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           +LL R ++S++  GD+I DPF GSGT+G  A K  R F G E+++D+ ++A KR+
Sbjct: 213 SLLERCILSASNIGDLIFDPFMGSGTTGVAALKHGRKFCGCELEEDFFELAKKRL 267


>gi|326560996|gb|EGE11361.1| DNA methylase N-4/N-6 domain protein [Moraxella catarrhalis 7169]
          Length = 273

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 106/267 (39%), Positives = 157/267 (58%), Gaps = 12/267 (4%)

Query: 14  NSIFEWKDK---IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
           N  FE  D+   I +GN I ++    + S+D+IFADPPY L  +G  ++  + ++ +V  
Sbjct: 4   NPYFEASDQTFNIYQGNCIDIMSHFQSNSIDMIFADPPYFLSNDGLTFK--NGIIQSVNK 61

Query: 71  -SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
             WD   +  +   F+  W+   +R+LK NGT+W+ G++HNIF +G +L+  NF ILN I
Sbjct: 62  GEWDTNDNENSIYNFSHEWIAQSKRLLKDNGTIWISGTHHNIFTVGQLLKENNFKILNII 121

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
            W K NP PNF  R F  + E +IWA    K   Y F+YD +K  N D Q +  W +P  
Sbjct: 122 TWEKPNPPPNFSCRYFTYSSEWIIWARKHSKIPHY-FDYDLMKKLNGDKQAKDVWRLPAV 180

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
              E+ + K     HPTQKP  LLSRI++SST+ GD+ILDPF GSGT+G  A  L R FI
Sbjct: 181 GSWEKTQGK-----HPTQKPLGLLSRIILSSTQKGDLILDPFSGSGTTGIAATILGRQFI 235

Query: 250 GIEMKQDYIDIATKRIASVQPLGNIEL 276
           GI+ + ++++++ +R  ++ P    E 
Sbjct: 236 GIDKELEFLELSKRRYQAITPKSKYEF 262


>gi|121634196|ref|YP_974441.1| putative modification methylase DpnIIB [Neisseria meningitidis
           FAM18]
 gi|120865902|emb|CAM09638.1| putative Modification methylase DpnIIB [Neisseria meningitidis
           FAM18]
 gi|325139212|gb|EGC61758.1| Modification methylase LlaDCHIB [Neisseria meningitidis ES14902]
 gi|325141587|gb|EGC64053.1| Modification methylase LlaDCHIB [Neisseria meningitidis 961-5945]
 gi|325197609|gb|ADY93065.1| Modification methylase LlaDCHIB [Neisseria meningitidis G2136]
          Length = 269

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 99/235 (42%), Positives = 143/235 (60%), Gaps = 7/235 (2%)

Query: 31  VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
           +LEK P    D+IF+DPPY L  +G     +  +V     +WDK     A   F   WL 
Sbjct: 40  ILEKYPNGCFDMIFSDPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGMAADLEFYEEWLR 98

Query: 91  ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
            C  +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP PN   R F ++ E
Sbjct: 99  LCYALLKPNGTIWVCGTFHNIYLIGYLMQTIGYHILNNITWEKPNPPPNLSCRFFTHSTE 158

Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
           T++WA  + KAK +TF+Y+ +KA N+  QM+  W  P  + +E+   K     HPTQKP 
Sbjct: 159 TILWAKKNKKAK-HTFHYEMMKAQNDGKQMKCVWTFPPPNKAEKTFGK-----HPTQKPL 212

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
            LL R ++S++  GD+I DPF GSGT+G  A K  R F G E+++D+ ++A KR+
Sbjct: 213 PLLERCILSASNIGDLIFDPFMGSGTTGVAALKHGRKFCGCELEEDFFELAKKRL 267


>gi|323140475|ref|ZP_08075403.1| DNA (cytosine-5-)-methyltransferase [Phascolarctobacterium sp. YIT
           12067]
 gi|322415043|gb|EFY05834.1| DNA (cytosine-5-)-methyltransferase [Phascolarctobacterium sp. YIT
           12067]
          Length = 269

 Score =  198 bits (504), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 107/252 (42%), Positives = 149/252 (59%), Gaps = 10/252 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +++ G++  +L+KL  +SVD+IFADPPY L  NG   R    +V     +WD     E  
Sbjct: 19  QLLLGDTFELLQKLRPESVDVIFADPPYFLSNNGITCRSG-KMVSVNKAAWDMVDDKEHM 77

Query: 82  DA----FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            A    F R W+  C++VLKPNGT+W+ G++HNIF IG  L+   F I+N+I W+K+NP 
Sbjct: 78  LANKHQFNRRWINLCKKVLKPNGTIWISGTFHNIFSIGMALEEEGFRIINNITWQKTNPP 137

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PN   R F ++ ET+IWA    K   Y FNY  +K  N   QM+  W   +   SE+   
Sbjct: 138 PNLACRCFTHSTETIIWACKDDKKAKYFFNYALMKEINGGKQMKDVWTGSLTKPSEKKFG 197

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K     HPTQKPE LL RIL +ST+ G I+LDPF GSGT+G  A +   +FIGI+  ++Y
Sbjct: 198 K-----HPTQKPEYLLERILRASTQAGYIVLDPFCGSGTTGVEALRNGCNFIGIDNVEEY 252

Query: 258 IDIATKRIASVQ 269
           + +  KR+   Q
Sbjct: 253 LKLTQKRLDKEQ 264


>gi|296314163|ref|ZP_06864104.1| DNA (cytosine-5-)-methyltransferase [Neisseria polysaccharea ATCC
           43768]
 gi|296839202|gb|EFH23140.1| DNA (cytosine-5-)-methyltransferase [Neisseria polysaccharea ATCC
           43768]
          Length = 269

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 99/235 (42%), Positives = 141/235 (60%), Gaps = 7/235 (2%)

Query: 31  VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
           +LEK P    D+IFADPPY L  +G     +  +V     +WDK     A   F   WL 
Sbjct: 40  ILEKHPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGMAADLEFYEEWLR 98

Query: 91  ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
            C  +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP PN   R F ++ E
Sbjct: 99  LCYALLKPNGTIWVCGTFHNIYLIGYLMQTVGYHILNNITWEKPNPPPNLSCRFFTHSTE 158

Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
           T++WA  + KAK +TF+Y+ +KA N   QM+  W  P  + +E+   K     HPTQKP 
Sbjct: 159 TILWAKKNKKAK-HTFHYEMMKAQNNGKQMKCVWTFPPPNKTEKTFGK-----HPTQKPL 212

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
            LL R ++S++  G +I DPF GSGT+G  A K  R F G E+++D+ ++A KR+
Sbjct: 213 PLLERCILSASNIGHLIFDPFMGSGTTGVAALKHGRKFCGCELEEDFFELAKKRL 267


>gi|153005643|ref|YP_001379968.1| DNA methylase N-4/N-6 domain-containing protein [Anaeromyxobacter
           sp. Fw109-5]
 gi|152029216|gb|ABS26984.1| DNA methylase N-4/N-6 domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 282

 Score =  197 bits (502), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 111/256 (43%), Positives = 141/256 (55%), Gaps = 11/256 (4%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +++G+ I  LE LP  SVD+ FADPPY L  NG                WD         
Sbjct: 25  LVQGDCIEALEALPPHSVDVAFADPPYMLS-NGGTTCQSGRRTSVNKGQWDASRGVVEDH 83

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           AF   WL A RRVLKP+GTLWV G+ H IF IG  +Q L + +LN I W K N  PN   
Sbjct: 84  AFQTRWLTAVRRVLKPSGTLWVSGTQHVIFSIGFAMQELGYHLLNTITWYKPNASPNLAC 143

Query: 143 RRFQNAHETLIWASP-SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL------ 195
           R F ++ E L+WASP   +  G+ FNY A+KA N   QMR  W IP   G + +      
Sbjct: 144 RFFTHSTEILLWASPMRTRPLGHRFNYKAMKAENGGKQMRDLWQIPAPEGDQVVWSVPTP 203

Query: 196 --RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
             R K   + HPTQKP ALL R+L SS   GD++LDPF GSGT+G  A K    F+G+E 
Sbjct: 204 GPREKVHGR-HPTQKPLALLERVLASSAAAGDLVLDPFSGSGTTGVAAVKAGCRFLGLER 262

Query: 254 KQDYIDIATKRIASVQ 269
              Y+D+A +R+ + Q
Sbjct: 263 DPAYVDLAARRMRAAQ 278


>gi|315453579|ref|YP_004073849.1| DNA methylase N-4/N-6 domain-containing protein [Helicobacter felis
           ATCC 49179]
 gi|315132631|emb|CBY83259.1| DNA methylase N-4/N-6 domain [Helicobacter felis ATCC 49179]
          Length = 266

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 106/245 (43%), Positives = 147/245 (60%), Gaps = 8/245 (3%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K K+   +   VL  L  + VDLIFADPPY L  NG L      +V     +WDK    E
Sbjct: 12  KFKLYHADCKEVLPHLQGQ-VDLIFADPPYFLS-NGGLSIQSGQIVSVDKGAWDKSQGLE 69

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
              AF   WL   +  LKP G+L++  +YHN+F +G  LQ+L F ++N I W KSNP PN
Sbjct: 70  HMHAFNMEWLGLAKDALKPTGSLFISATYHNLFSLGLALQSLGFKLINLITWHKSNPPPN 129

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           F  R   +A E ++WA  SPK   + FNY+ +KA NE+ QMR  W +P  +  E+   K 
Sbjct: 130 FSCRTLVHASEQILWARKSPK-HAHIFNYEHMKALNENKQMRDVWTLPAIAPWEKKLGK- 187

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
               HPTQKP +LL+R++V +++   +I DPF GSG++G  A  L RSF+GIE +Q++I+
Sbjct: 188 ----HPTQKPLSLLTRLIVMASQQESLICDPFSGSGSTGIAANLLGRSFVGIEREQEFIE 243

Query: 260 IATKR 264
           +ATKR
Sbjct: 244 LATKR 248


>gi|315655312|ref|ZP_07908212.1| modification methylase BabI [Mobiluncus curtisii ATCC 51333]
 gi|315490252|gb|EFU79877.1| modification methylase BabI [Mobiluncus curtisii ATCC 51333]
          Length = 266

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 103/246 (41%), Positives = 145/246 (58%), Gaps = 6/246 (2%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K K+I  +    LE L  +S+D+IFADPPY L  +G +       V      WDK     
Sbjct: 15  KAKLILADVFDALENLEEQSIDMIFADPPYFLSNDG-ISCSGGKQVSVNKGDWDKGLPLS 73

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
               F R W+  C+RVLK +G++W+ G++HNI+ IG+ L+   F ILN+I W+K NP PN
Sbjct: 74  EKHEFNRHWIRECKRVLKRDGSIWISGTFHNIYSIGSALEQERFKILNNITWQKLNPPPN 133

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
              R F ++ ET+IWA    K   + FNY  +K  N+  QM+  W      G+   +N+ 
Sbjct: 134 LGCRCFTHSTETVIWARKDEKKAKHKFNYGLMKELNDGKQMKDVW-----QGTLTPKNEK 188

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
               HPTQKPE LL RI+++ST  GD++LDPF GSGT+  VA +L RS IGI+   +Y++
Sbjct: 189 AFGKHPTQKPEYLLERIILASTNEGDLVLDPFVGSGTTVVVANRLGRSGIGIDNNPEYLE 248

Query: 260 IATKRI 265
           IA KR+
Sbjct: 249 IAKKRL 254


>gi|462633|sp|P34721|MT1B_MORBO RecName: Full=Modification methylase MboIB; Short=M.MboIB; AltName:
           Full=Adenine-specific methyltransferase MboIB; AltName:
           Full=M.MboI C
 gi|303630|dbj|BAA03073.1| MboI methyltransferase C [Moraxella bovis]
          Length = 273

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 106/259 (40%), Positives = 153/259 (59%), Gaps = 12/259 (4%)

Query: 17  FEWKDK---IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SW 72
           FE  DK   I +GN I  +      S+D+IFADPPY L  +G  ++  +S++ +V    W
Sbjct: 7   FESDDKNFNIYQGNCIDFMSHFQDNSIDMIFADPPYFLSNDGLTFK--NSIIQSVNKGEW 64

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           DK  +  +   F   W+   R++LK NGT+W+ G++HNIF +G +L+  NF ILN I W 
Sbjct: 65  DKNDNEASIYNFNHEWIAQARQLLKDNGTIWISGTHHNIFTVGQVLKENNFKILNIITWE 124

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K NP PNF  R F  + E +IWA    K   Y FNYD +K  N D Q +  W +P     
Sbjct: 125 KPNPPPNFSCRYFTYSSEWIIWARKHSKIPHY-FNYDLMKKLNGDKQQKDIWRLPAVGSW 183

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           E+ + K     HPTQKP  LLSRI++SST+  D+ILDPF GSGT+G     L R++IGIE
Sbjct: 184 EKTQGK-----HPTQKPLGLLSRIILSSTQKDDLILDPFSGSGTTGIAGVLLDRNYIGIE 238

Query: 253 MKQDYIDIATKRIASVQPL 271
            + ++++++ +R   + P+
Sbjct: 239 QELEFLELSKRRYHEITPV 257


>gi|254457477|ref|ZP_05070905.1| DNA methylase [Campylobacterales bacterium GD 1]
 gi|207086269|gb|EDZ63553.1| DNA methylase [Campylobacterales bacterium GD 1]
          Length = 258

 Score =  196 bits (498), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 111/262 (42%), Positives = 154/262 (58%), Gaps = 23/262 (8%)

Query: 21  DKIIKGNSISVL---EKLPAKSVDLIFADPPYNLQLN-----GQLYRPDHSLVDAVTDSW 72
           D++   + I  L   +K+  +SV LIFADPPYNL  N     G     D ++V+   + W
Sbjct: 4   DQVYNADCIKTLNDTKKIAKESVQLIFADPPYNLSGNALKSTGSKTGGDFTMVN---EDW 60

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           DK    E +  FT  W+ +C+ +LKPNG++++  SYHN+      L+   F I N I W 
Sbjct: 61  DKMEEQE-FITFTNEWVKSCKDILKPNGSIFIACSYHNMGESIMSLKLNGFDIKNIITWN 119

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN-------EDVQMRSDWL 185
           KSN MPN   R   +  E +IWA    K KG+ FNYD LK  N        D QMR  W 
Sbjct: 120 KSNAMPNLTRRVLTHTTEFVIWAV---KGKGWIFNYDILKELNPEKRQDGTDKQMRDIWT 176

Query: 186 IPICSGSERLRNKDGEK-LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           +P+C G ERLR+ DG+K LHPTQKPE LL RI++  +  GD++LDPF GSGT+  +AKK 
Sbjct: 177 LPLCQGKERLRDADGKKALHPTQKPEELLKRIILGFSNEGDLVLDPFGGSGTTPFIAKKY 236

Query: 245 RRSFIGIEMKQDYIDIATKRIA 266
           +R++I IE ++ Y D   +R++
Sbjct: 237 KRNYIAIEREKKYADAIRQRVS 258


>gi|325127469|gb|EGC50398.1| adenine-specific methyltransferase LlaDCHIB [Neisseria meningitidis
           N1568]
          Length = 266

 Score =  196 bits (498), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 98/233 (42%), Positives = 140/233 (60%), Gaps = 7/233 (3%)

Query: 31  VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
           +LEK P    D+IFADPPY L  +G     +  +V     +WDK     A   F   WL 
Sbjct: 40  ILEKYPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGMAADLEFYEEWLR 98

Query: 91  ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
            C  +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP PN   R F ++ E
Sbjct: 99  LCYALLKPNGTIWVCGTFHNIYLIGYLMQTIGYHILNNITWEKPNPPPNLSCRFFTHSTE 158

Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
           T++WA  + KAK +TF+Y+ +KA  +  QM+  W  P  + +E+   K     HPTQKP 
Sbjct: 159 TILWAKKNKKAK-HTFHYEMMKAQTDGKQMKCVWTFPPPNKAEKTFGK-----HPTQKPL 212

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
            LL R ++S++  GD+I DPF GSGT+G  A K  R F G E+++D+ ++A K
Sbjct: 213 PLLERCILSASNIGDLIFDPFMGSGTTGVAALKHGRKFCGCELEEDFFELAKK 265


>gi|86159277|ref|YP_466062.1| DNA methylase N-4/N-6 [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775788|gb|ABC82625.1| DNA methylase N-4/N-6 [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 285

 Score =  196 bits (497), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 110/273 (40%), Positives = 147/273 (53%), Gaps = 25/273 (9%)

Query: 16  IFEWKD-----------KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL 64
           + EW D            +++G+ +  LE+LP  SVD+ FADPPY L   G   +     
Sbjct: 7   LHEWNDLPGAAERGRGWALVQGDCVEALERLPPHSVDVAFADPPYMLSNGGSTCQGGRR- 65

Query: 65  VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
                 SWD    F A  AF   WL A R+VLKP+GTLWV G+ H IF IG  +Q + F 
Sbjct: 66  TSVNKGSWDASGGFAADHAFQARWLQAVRKVLKPSGTLWVSGTQHVIFSIGYAMQEMGFH 125

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP-SPKAKGYTFNYDALKAANEDVQMRSD 183
           +LN + W K N  PN   R F ++ E L+WASP   +   + FNY A+K AN   QMR  
Sbjct: 126 LLNTVTWYKPNASPNLACRFFTHSTEILLWASPMKTRPLAHRFNYRAMKTANGGKQMRDL 185

Query: 184 WLI---PICSGSERL--------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
           W I   P   G + +        R K   + HPTQKP ALL R+L +S  PGD++LDPF 
Sbjct: 186 WEIADRPAPGGDQVVWSVPTPGPREKVHGR-HPTQKPLALLERVLAASAAPGDLVLDPFS 244

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           GSGT+G  A +    F+G+E    Y+D+A +R+
Sbjct: 245 GSGTTGVAALRAGCRFLGLERDPSYVDLAARRL 277


>gi|115375188|ref|ZP_01462455.1| DNA methylase [Stigmatella aurantiaca DW4/3-1]
 gi|310823140|ref|YP_003955498.1| adenine-specific DNA methyltransferase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115367839|gb|EAU66807.1| DNA methylase [Stigmatella aurantiaca DW4/3-1]
 gi|309396212|gb|ADO73671.1| adenine-specific DNA methyltransferase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 289

 Score =  195 bits (496), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 108/264 (40%), Positives = 142/264 (53%), Gaps = 18/264 (6%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+ +G+S+ +L + P +  DL+FADPPY L  NG               +WD     E  
Sbjct: 27  KLYQGDSVELLNQFPEQQFDLVFADPPYFLS-NGGFTCKSGKRASVAKGAWDVSRGVEED 85

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             FT  WL AC+RVLKP GTLWV G+ H IF +G  +Q L F +LN + W K N  PN  
Sbjct: 86  HRFTTEWLKACQRVLKPTGTLWVSGTQHVIFNVGFAMQKLGFKLLNTVTWYKPNASPNLS 145

Query: 142 GRRFQNAHETLIWASPSP-KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL----- 195
            R F ++ E LIWASP P K   +TFNY  +K  N   QMR  W +P  +G E L     
Sbjct: 146 CRYFTHSTELLIWASPKPAKTLQHTFNYARMKTENGGKQMRDVWNLPR-TGEEELSADGA 204

Query: 196 ----------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
                     R +     HPTQKP ALL RI+ +ST     +LDPF GSGT+G  A KL 
Sbjct: 205 GRMWTQIAPRREEKAFGSHPTQKPVALLERIIEASTPEDATVLDPFNGSGTTGVAALKLG 264

Query: 246 RSFIGIEMKQDYIDIATKRIASVQ 269
           R + GI++   Y+ +  KR+ +V+
Sbjct: 265 RRYTGIDLDPTYLSLTKKRLDAVK 288


>gi|329119746|ref|ZP_08248425.1| modification methylase DpnIIB [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464141|gb|EGF10447.1| modification methylase DpnIIB [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 269

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 98/235 (41%), Positives = 142/235 (60%), Gaps = 7/235 (2%)

Query: 31  VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
           +L+K P    D+IFADPPY L  NG   + +  +V      WDK     A   F   WL 
Sbjct: 39  ILDKHPEGCFDMIFADPPYFLSNNGFTCQ-NGQMVSVNKGGWDKSQGMAADMEFYEEWLR 97

Query: 91  ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
            C  +LKPNGT+WV G+ HNI+ +G ++Q++ + ILN+I W K NP PN   R F ++ E
Sbjct: 98  LCYALLKPNGTIWVCGTQHNIYLVGYLMQSVGYHILNNITWEKPNPPPNLSCRFFTHSTE 157

Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
           TL+WA  +  AK +TF+Y  +KA N   QM+S W +   + +E+   K     HPTQKP 
Sbjct: 158 TLLWAKKNKTAK-HTFHYKVMKAQNGGKQMKSVWQLTPPNKTEKTHGK-----HPTQKPL 211

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           ALL R +++++  GD++ DPF GSGT+GA A K  R F G E ++++ ++A KR+
Sbjct: 212 ALLERCILAASNIGDLVFDPFAGSGTTGAAALKHGRRFCGCEKEEEFFELAKKRL 266


>gi|162447937|ref|YP_001621069.1| DNA methylase [Acholeplasma laidlawii PG-8A]
 gi|161986044|gb|ABX81693.1| DNA methylase [Acholeplasma laidlawii PG-8A]
          Length = 256

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 101/248 (40%), Positives = 153/248 (61%), Gaps = 9/248 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS-SFEA 80
           K+  G+S  +L++L  KSVD+IFADPPY L  NG +      +V     +WDK   + E 
Sbjct: 12  KLYLGDSFEILDELDEKSVDMIFADPPYFLSNNG-ITCQGGKMVSVNKATWDKTEMTIEE 70

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
              +   WL  C+R+LK  GT+W+ G+ HNI+ IG  L+   F I+N+I W K+NP P+ 
Sbjct: 71  KIKYNTTWLNKCKRILKDTGTIWISGTLHNIYIIGVCLELEGFQIINNITWEKTNPPPHL 130

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
             + F ++ ET++WA     +K Y F+Y  +K+ N + QM+  W   +   SE+   K  
Sbjct: 131 ARKAFTHSTETVLWARKK-GSKNY-FDYSLMKSLNNNKQMKDVWRFSLTKPSEKRLGK-- 186

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
              HPTQKP ALL RI+++STK GD++LDPF GSGT+G  +  L R +IGI+ ++DY+++
Sbjct: 187 ---HPTQKPLALLERIILASTKEGDVVLDPFSGSGTTGVASIMLNRKYIGIDFEKDYLNL 243

Query: 261 ATKRIASV 268
           + KR+ S+
Sbjct: 244 SIKRLESI 251


>gi|254492921|ref|ZP_05106092.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae 1291]
 gi|268598172|ref|ZP_06132339.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae MS11]
 gi|268600516|ref|ZP_06134683.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae PID18]
 gi|268602749|ref|ZP_06136916.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae PID1]
 gi|268681298|ref|ZP_06148160.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae PID332]
 gi|291044684|ref|ZP_06570393.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae DGI2]
 gi|226511961|gb|EEH61306.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae 1291]
 gi|268582303|gb|EEZ46979.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae MS11]
 gi|268584647|gb|EEZ49323.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae PID18]
 gi|268586880|gb|EEZ51556.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae PID1]
 gi|268621582|gb|EEZ53982.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae PID332]
 gi|291011578|gb|EFE03574.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae DGI2]
          Length = 252

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 97/229 (42%), Positives = 139/229 (60%), Gaps = 7/229 (3%)

Query: 31  VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
           +LEK P    D+IFADPPY L  +G     +  +V     +WDK     A   F   WL 
Sbjct: 31  ILEKHPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGMAADLEFYEEWLR 89

Query: 91  ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
            C  +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP PN   R F ++ E
Sbjct: 90  LCYALLKPNGTIWVCGTFHNIYLIGYLMQTVGYHILNNITWEKPNPPPNLSCRFFTHSTE 149

Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
           T++WA  + KAK +TF+Y+ +KA N   QM+  W  P  + +E+   K     HPTQKP 
Sbjct: 150 TILWAKKNKKAK-HTFHYEMMKAQNNGKQMKCVWTFPPPNKTEKTFGK-----HPTQKPL 203

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           +LL R ++S++  GD+I DPF GSGT+G  A K  R F G E+++D+++
Sbjct: 204 SLLERCILSASNIGDLIFDPFMGSGTTGVAALKHGRRFCGCELEEDFLN 252


>gi|220918133|ref|YP_002493437.1| DNA methylase N-4/N-6 domain protein [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219955987|gb|ACL66371.1| DNA methylase N-4/N-6 domain protein [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 286

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 110/273 (40%), Positives = 146/273 (53%), Gaps = 25/273 (9%)

Query: 16  IFEWKD-----------KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL 64
           + EW D            +++G+ +  LE+LP  SVD+ FADPPY L   G   +     
Sbjct: 8   LHEWNDLPGVAERGRGWALVQGDCVEALERLPPHSVDVAFADPPYMLSNGGSTCQGGRR- 66

Query: 65  VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
                 SWD    F A  AF   WL A R+VLKP+GTLWV G+ H IF IG  +Q L F 
Sbjct: 67  TSVNKGSWDASGGFAADHAFQARWLQAVRKVLKPSGTLWVSGTQHVIFSIGYAMQELGFH 126

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP-SPKAKGYTFNYDALKAANEDVQMRSD 183
           +LN + W K N  PN   R F ++ E L+WASP   +   + FNY A+K AN   QMR  
Sbjct: 127 LLNTVTWYKPNASPNLACRFFTHSTEILLWASPMKARPLAHRFNYRAMKTANGGKQMRDL 186

Query: 184 WLI---PICSGSERL--------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
           W I   P   G + +        R K   + HPTQKP ALL R+L +S  PGD++LDPF 
Sbjct: 187 WEIADRPAPGGDQVVWSVPTPGPREKVHGR-HPTQKPLALLERVLAASAAPGDLVLDPFS 245

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           GS T+G  A +    F+G+E    Y+D+A +R+
Sbjct: 246 GSATTGVAALRAGCRFLGLERDPGYVDLAARRL 278


>gi|197123344|ref|YP_002135295.1| DNA methylase N-4/N-6 domain protein [Anaeromyxobacter sp. K]
 gi|196173193|gb|ACG74166.1| DNA methylase N-4/N-6 domain protein [Anaeromyxobacter sp. K]
          Length = 286

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 110/273 (40%), Positives = 146/273 (53%), Gaps = 25/273 (9%)

Query: 16  IFEWKD-----------KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL 64
           + EW D            +++G+ +  LE+LP  SVD+ FADPPY L   G   +     
Sbjct: 8   LHEWNDLPGVAERGRGWALVQGDCVEALERLPPHSVDVAFADPPYMLSNGGSTCQGGRR- 66

Query: 65  VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
                 SWD    F A  AF   WL A R+VLKP+GTLWV G+ H IF IG  +Q L F 
Sbjct: 67  TSVNKGSWDASGGFAADHAFQARWLQAVRKVLKPSGTLWVSGTQHVIFSIGYAMQELGFH 126

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP-SPKAKGYTFNYDALKAANEDVQMRSD 183
           +LN + W K N  PN   R F ++ E L+WASP   +   + FNY A+K AN   QMR  
Sbjct: 127 LLNTVTWYKPNASPNLACRFFTHSTEILLWASPMKARPLAHRFNYRAMKTANGGKQMRDL 186

Query: 184 WLI---PICSGSERL--------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
           W I   P   G + +        R K   + HPTQKP ALL R+L +S  PGD++LDPF 
Sbjct: 187 WEIADRPAPGGDQVVWSVPTPGPREKVHGR-HPTQKPLALLERVLAASAAPGDLVLDPFS 245

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           GS T+G  A +    F+G+E    Y+D+A +R+
Sbjct: 246 GSATTGVAALRAGCRFLGLERDPGYVDLAARRL 278


>gi|239998143|ref|ZP_04718067.1| putative modification methylase [Neisseria gonorrhoeae 35/02]
 gi|240015769|ref|ZP_04722309.1| putative modification methylase [Neisseria gonorrhoeae FA6140]
 gi|240079906|ref|ZP_04724449.1| putative modification methylase [Neisseria gonorrhoeae FA19]
 gi|240112113|ref|ZP_04726603.1| putative modification methylase [Neisseria gonorrhoeae MS11]
 gi|240114859|ref|ZP_04728921.1| putative modification methylase [Neisseria gonorrhoeae PID18]
 gi|240117062|ref|ZP_04731124.1| putative modification methylase [Neisseria gonorrhoeae PID1]
 gi|240122700|ref|ZP_04735656.1| putative modification methylase [Neisseria gonorrhoeae PID332]
 gi|260441326|ref|ZP_05795142.1| putative modification methylase [Neisseria gonorrhoeae DGI2]
 gi|268593992|ref|ZP_06128159.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268596046|ref|ZP_06130213.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268547381|gb|EEZ42799.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268549834|gb|EEZ44853.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|317165585|gb|ADV09126.1| putative modification methylase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 225

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 97/229 (42%), Positives = 139/229 (60%), Gaps = 7/229 (3%)

Query: 31  VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
           +LEK P    D+IFADPPY L  +G     +  +V     +WDK     A   F   WL 
Sbjct: 4   ILEKHPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGMAADLEFYEEWLR 62

Query: 91  ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
            C  +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP PN   R F ++ E
Sbjct: 63  LCYALLKPNGTIWVCGTFHNIYLIGYLMQTVGYHILNNITWEKPNPPPNLSCRFFTHSTE 122

Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
           T++WA  + KAK +TF+Y+ +KA N   QM+  W  P  + +E+   K     HPTQKP 
Sbjct: 123 TILWAKKNKKAK-HTFHYEMMKAQNNGKQMKCVWTFPPPNKTEKTFGK-----HPTQKPL 176

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           +LL R ++S++  GD+I DPF GSGT+G  A K  R F G E+++D+++
Sbjct: 177 SLLERCILSASNIGDLIFDPFMGSGTTGVAALKHGRRFCGCELEEDFLN 225


>gi|189485748|ref|YP_001956689.1| DNA modification methylase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287707|dbj|BAG14228.1| DNA modification methylase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 310

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 109/251 (43%), Positives = 147/251 (58%), Gaps = 15/251 (5%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G+ I +L+ LP  SV++IFADPPY L  NG         V      WD     E    F 
Sbjct: 18  GDCIEILKLLPIDSVNMIFADPPYFLS-NGSFTCHAGKRVSVKKGDWDLGGGTEKNLEFH 76

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
            AWL AC+RVLKPNGT+WV G+YH+I++ G  L+   +  LNDI+W K N  PN   R F
Sbjct: 77  IAWLKACKRVLKPNGTIWVSGTYHSIYQCGVALEINGYHFLNDIIWFKPNAAPNLSCRFF 136

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAAN--EDV------QMRSDWLIPICSGSERLRN 197
             +HET+IW+    K++ + FNYD +K     ED+      QMRS W I     SE++  
Sbjct: 137 TASHETIIWSKKEKKSR-HIFNYDLMKKGQWKEDLLKKDGSQMRSVWSIGTPKPSEKIFG 195

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K     HPTQKP  LL RI+++ST+ GDIILDPF GS T+G  A    R FIGI+ ++ Y
Sbjct: 196 K-----HPTQKPLDLLKRIVLASTEAGDIILDPFTGSSTTGIAAVTNGRMFIGIDKEKRY 250

Query: 258 IDIATKRIASV 268
           ++++ KR  ++
Sbjct: 251 LELSVKRFENL 261


>gi|293397789|ref|ZP_06641995.1| DNA methylase [Neisseria gonorrhoeae F62]
 gi|291611735|gb|EFF40804.1| DNA methylase [Neisseria gonorrhoeae F62]
          Length = 225

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 97/229 (42%), Positives = 138/229 (60%), Gaps = 7/229 (3%)

Query: 31  VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
           +LEK P    D+IFADPPY L  +G     +  +V     +WDK     A   F   WL 
Sbjct: 4   ILEKHPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGMAADLEFYEEWLR 62

Query: 91  ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
            C  +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP PN   R F ++ E
Sbjct: 63  LCYALLKPNGTIWVCGTFHNIYLIGYLMQTVGYHILNNITWEKPNPPPNLSCRFFTHSTE 122

Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
           T++WA  + KAK +TF+Y+ +KA N   QM+  W  P  + +E+   K     HPTQKP 
Sbjct: 123 TILWAKKNKKAK-HTFHYEMMKAQNNGKQMKCVWTFPPPNKTEKTFGK-----HPTQKPL 176

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
            LL R ++S++  GD+I DPF GSGT+G  A K  R F G E+++D+++
Sbjct: 177 PLLERCILSASNIGDLIFDPFMGSGTTGVAALKHGRRFCGCELEEDFLN 225


>gi|108763695|ref|YP_633292.1| putative adenine-specific DNA methyltransferase [Myxococcus xanthus
           DK 1622]
 gi|108467575|gb|ABF92760.1| putative adenine-specific DNA methyltransferase [Myxococcus xanthus
           DK 1622]
          Length = 294

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 105/259 (40%), Positives = 141/259 (54%), Gaps = 17/259 (6%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++ G+S+ ++ +   ++ D+IFADPPY L  NG         V      WD     E   
Sbjct: 31  LLHGDSLELMSQFEPQTFDMIFADPPYFLS-NGGTTCKGGKRVSVAKGGWDVSRGVEEDH 89

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FT  WL AC+R+LKP GTLWV G+ H IF  G  +Q L + +LN + W K N  PN   
Sbjct: 90  KFTTEWLAACQRLLKPTGTLWVSGTQHVIFNAGFAMQKLGYKLLNTVTWFKPNASPNLAC 149

Query: 143 RRFQNAHETLIWASPSPKAK-GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG- 200
           R F ++ E LIWASP    K  +TFNY  +KA N   QMR  W +P    +E   + +G 
Sbjct: 150 RYFTHSTELLIWASPKSGGKLQHTFNYARMKAENGGKQMRDAWALPPSGDAELTADGEGR 209

Query: 201 -----------EKL---HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                      EK    HPTQKP ALL RIL +S  P  ++LDPF GSGTSG  A KL  
Sbjct: 210 MWTLTVPRGGEEKAFGSHPTQKPVALLERILEASCPPDALVLDPFNGSGTSGVAALKLGH 269

Query: 247 SFIGIEMKQDYIDIATKRI 265
            ++GI+M + Y+ ++ KR+
Sbjct: 270 RYVGIDMDEKYLALSEKRL 288


>gi|257455789|ref|ZP_05621015.1| DNA methylase [Enhydrobacter aerosaccus SK60]
 gi|257446803|gb|EEV21820.1| DNA methylase [Enhydrobacter aerosaccus SK60]
          Length = 269

 Score =  192 bits (489), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 101/243 (41%), Positives = 147/243 (60%), Gaps = 9/243 (3%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSFEAY 81
           +++G+ + +L  +  KS+++IFADPPY L  +G   +  + +V +V    WDKFS     
Sbjct: 13  LLQGDCLHILPTIDDKSINMIFADPPYFLSNDGLTVK--NGMVQSVNKGEWDKFSDDNEV 70

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             FT  WL   +R+L  NGT+W+ G++HNIF +G +L  LNF ILN I W K NP PNF 
Sbjct: 71  YIFTYDWLSQAKRMLADNGTIWMSGTHHNIFTLGRVLSQLNFKILNMITWEKPNPPPNFS 130

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R F  + E +IWA  +PK   Y F+Y+ +K+ N D QM+  W +P  S  E+   K   
Sbjct: 131 CRYFTYSTEWIIWARKNPKIPHY-FDYELMKSLNGDKQMKDVWRLPAVSSWEKQFGK--- 186

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP  LLSRI+++STK  D++LDPF GS T+G  A    R FIG++   +++ ++
Sbjct: 187 --HPTQKPLGLLSRIVLASTKANDLVLDPFTGSSTTGIAANLFGRKFIGVDQDSNFLTLS 244

Query: 262 TKR 264
             R
Sbjct: 245 KNR 247


>gi|298346767|ref|YP_003719454.1| adenine-specific DNA-methyltransferase [Mobiluncus curtisii ATCC
           43063]
 gi|298236828|gb|ADI67960.1| site-specific DNA-methyltransferase (adenine-specific) [Mobiluncus
           curtisii ATCC 43063]
          Length = 274

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 100/244 (40%), Positives = 142/244 (58%), Gaps = 6/244 (2%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+I  +    L+ +  +SVD+IFADPPY L  +G +       V      WDK       
Sbjct: 17  KLILADVFDALKNIEEQSVDMIFADPPYFLSNDG-ISCSGGKQVSVNKGDWDKGLPLSEK 75

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F R W+  C+RVLK +G++W+ G++HNI+ IG  L+   F ILN+I W+K NP PN  
Sbjct: 76  HEFNRHWIRECKRVLKLDGSIWISGTFHNIYSIGFALEQERFKILNNITWQKLNPPPNLG 135

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R F ++ ET+IWA        + FNY  +K  N+  QM+  W      G+   +N+   
Sbjct: 136 CRCFTHSTETVIWARKDENKAKHKFNYGLMKELNDGKQMKDVW-----QGTLTPKNEKAF 190

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKPE LL RI+++ST  GD++LDPF GSGT+  VA +L RS IGI+   +Y++IA
Sbjct: 191 GKHPTQKPEYLLERIILASTNEGDLVLDPFVGSGTTVVVANRLGRSGIGIDNNTEYLEIA 250

Query: 262 TKRI 265
            KR+
Sbjct: 251 KKRL 254


>gi|294673721|ref|YP_003574337.1| DNA (cytosine-5-)-methyltransferase [Prevotella ruminicola 23]
 gi|294472635|gb|ADE82024.1| DNA (cytosine-5-)-methyltransferase [Prevotella ruminicola 23]
          Length = 414

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 100/242 (41%), Positives = 149/242 (61%), Gaps = 8/242 (3%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +++G+ +SVL     K  D+IFADPPY L  NG +   +  +V     +WDK  S E  D
Sbjct: 17  LVEGDCVSVLNAFDFK-FDMIFADPPYFLS-NGGISVSNGKVVCVDKGAWDKAPSSEYID 74

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   WL AC+  LK NGT+W+ G++HNIF +   L  L F ILN + W K++P  N   
Sbjct: 75  EFNHKWLSACKDKLKDNGTIWISGTHHNIFSVAEQLSELGFKILNVVTWNKTDPPDNVSH 134

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F+++ E +IWA  S KA+ + +NY+ ++  N+  QM   W +P  S  E+   K    
Sbjct: 135 RVFKHSAEYIIWAKKSKKAQ-HRYNYELMRQLNDGKQMTDVWRMPAVSKWEKSCGK---- 189

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKP +LL+RI+++STK GD +LDPF GSGT+G  A  L R ++GI++++ ++++A 
Sbjct: 190 -HPTQKPLSLLARIIMASTKEGDWVLDPFNGSGTTGVAASLLGRKYLGIDIEKSFLELAA 248

Query: 263 KR 264
           KR
Sbjct: 249 KR 250


>gi|149917692|ref|ZP_01906188.1| DNA methylase N-4/N-6 [Plesiocystis pacifica SIR-1]
 gi|149821474|gb|EDM80874.1| DNA methylase N-4/N-6 [Plesiocystis pacifica SIR-1]
          Length = 348

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 102/246 (41%), Positives = 145/246 (58%), Gaps = 7/246 (2%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + ++I+G+S+ +LE+LP  SVD+IFADPPY L  NG         V      WD     +
Sbjct: 86  RARLIQGDSLDILEQLPEGSVDVIFADPPYFLS-NGGTTCQGGKRVSVNKGKWDASLGAQ 144

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
              AF + WL AC+RVL  NGT+WV G+ H IF +G  +Q L F +LNDIVW K NP PN
Sbjct: 145 DNHAFNKRWLSACQRVLADNGTIWVSGTAHVIFSVGYAMQELGFKMLNDIVWEKPNPPPN 204

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
              R F ++ E ++WA+ + K+K Y ++Y  +K  N   QM++ W       SE+   K 
Sbjct: 205 LSCRYFTHSTELVLWAAKTRKSKHY-YDYQEMKLRNGGKQMKNVWRFTAPGKSEKTHGK- 262

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
               HPTQKP ALL R+L++S  P   +LDPF GSGT+G  A KL   + G+E + +Y+ 
Sbjct: 263 ----HPTQKPLALLDRLLMASCHPDARVLDPFNGSGTTGVAAAKLGLQYTGLEREPEYLA 318

Query: 260 IATKRI 265
           ++  R+
Sbjct: 319 LSKARL 324


>gi|306818165|ref|ZP_07451896.1| modification methylase BabI [Mobiluncus mulieris ATCC 35239]
 gi|304649129|gb|EFM46423.1| modification methylase BabI [Mobiluncus mulieris ATCC 35239]
          Length = 323

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 97/231 (41%), Positives = 139/231 (60%), Gaps = 6/231 (2%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I  G++  +L ++   SVD+IFADPPY L  NG +       V     +WD+    E  
Sbjct: 23  RIFLGDAFEILARIAQSSVDMIFADPPYFLS-NGGISCSGGRQVSVNKGAWDRGMGTEEK 81

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F R W+  C+RVLK +G++WV G++HNI+ +G  L+   F ILN+I W+K NP PN  
Sbjct: 82  HGFNRRWVRQCKRVLKRDGSIWVSGTFHNIYSLGFALEQEGFKILNNITWQKLNPPPNLA 141

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R F ++ ET+IWA  + +   + F+Y  +K  N   QM+  W   +   SE++  K   
Sbjct: 142 CRCFTHSTETVIWARKNERKARHFFDYPLMKTLNGGKQMKDVWAGTLTPKSEKICGK--- 198

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
             HPTQKPE LL RI+++ST+ GD++LDPF GSGT+  VAK+L R  IGIE
Sbjct: 199 --HPTQKPEYLLERIILASTREGDLVLDPFVGSGTTAVVAKRLGRYSIGIE 247


>gi|146297740|ref|YP_001181511.1| DNA methylase N-4/N-6 domain-containing protein
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145411316|gb|ABP68320.1| DNA methylase N-4/N-6 domain protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 247

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 111/261 (42%), Positives = 148/261 (56%), Gaps = 17/261 (6%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS-F 78
           K  +   + ++VL+K+   S+DLIFADPPYNL     L       V      WDK    F
Sbjct: 3   KVHLFNDDCLNVLKKIEDNSIDLIFADPPYNLSSENALTTRAGKPVKCYKGEWDKIDDIF 62

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           E    F   W+  C RVLK  GT+W+ G+ HN   IGT+L+ L  WI+NDI+W K N  P
Sbjct: 63  E----FNLRWIEQCVRVLKETGTIWISGTLHNHPIIGTILKQLGLWIINDIIWFKPNATP 118

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
                RF  + E LIW +   K K Y F+Y+  +  N   QMR+ W IP    ++R +  
Sbjct: 119 LLSRNRFVPSTE-LIWVAS--KNKRYYFDYEMARKLNGGKQMRNLWEIP----AQRHKTP 171

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPT+KPEALL RI++  +K GD++LDPF GSGT+G VAK L+R+FIGIE+   Y 
Sbjct: 172 -----HPTEKPEALLERIILIGSKEGDVVLDPFMGSGTTGVVAKLLKRNFIGIEIDPVYF 226

Query: 259 DIATKRIASVQPLGNIELTVL 279
           +IA KRI   +P+    L  L
Sbjct: 227 EIAKKRIEEEKPIQQTFLNFL 247


>gi|59800480|ref|YP_207192.1| putative modification methylase [Neisseria gonorrhoeae FA 1090]
 gi|59717375|gb|AAW88780.1| putative modification methylase [Neisseria gonorrhoeae FA 1090]
          Length = 225

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 96/229 (41%), Positives = 137/229 (59%), Gaps = 7/229 (3%)

Query: 31  VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
           +LEK P    D+IFADPPY L  +G     +  +V     +WDK     A   F   WL 
Sbjct: 4   ILEKHPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGMAADLEFYEEWLR 62

Query: 91  ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
            C  +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP PN   R F ++ E
Sbjct: 63  LCYALLKPNGTIWVCGTFHNIYLIGYLMQTVGYHILNNITWEKPNPPPNLSCRFFTHSTE 122

Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
           T++WA  + KAK +TF+Y+ +KA N   QM+  W     + +E+   K     HPTQKP 
Sbjct: 123 TILWAKKNKKAK-HTFHYEMMKAQNNGKQMKCVWTFAPPNKTEKTFGK-----HPTQKPL 176

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
            LL R ++S++  GD+I DPF GSGT+G  A K  R F G E+++D+++
Sbjct: 177 PLLERCILSASNIGDLIFDPFMGSGTTGVAALKHGRRFCGCELEEDFLN 225


>gi|218514040|ref|ZP_03510880.1| site-specific DNA-methyltransferase (adenine-specific) protein
           [Rhizobium etli 8C-3]
          Length = 131

 Score =  189 bits (479), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 84/109 (77%), Positives = 94/109 (86%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE LP  SVD+IFADPPYNLQL G L+RPD SLVDAV D WD+F+SF
Sbjct: 23  WIDTIIKGDCVSALEALPTHSVDVIFADPPYNLQLGGTLHRPDQSLVDAVDDEWDQFASF 82

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
           EAYDAFTRAWLLACRRVLKP G++WVIGSYHNIFR+G  LQ+LNFWILN
Sbjct: 83  EAYDAFTRAWLLACRRVLKPTGSIWVIGSYHNIFRVGATLQDLNFWILN 131


>gi|239616524|ref|YP_002939846.1| DNA methylase N-4/N-6 domain protein [Kosmotoga olearia TBF 19.5.1]
 gi|239505355|gb|ACR78842.1| DNA methylase N-4/N-6 domain protein [Kosmotoga olearia TBF 19.5.1]
          Length = 250

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 111/261 (42%), Positives = 147/261 (56%), Gaps = 19/261 (7%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+I G+ I  L+KL A+SVDLIFADPPYNL     L       V      WDK  +    
Sbjct: 5   KLILGDCIEELKKLEAESVDLIFADPPYNLSGENHLTVHAGKPVKLDKGEWDKIDNIHE- 63

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F   W+  C RVLKP+GT+W+ G+ HN   IG  L+ L  WI+ND+VW K N  P   
Sbjct: 64  --FNLNWIKECIRVLKPHGTIWISGTLHNHPSIGMALKQLGLWIINDVVWYKPNATPLLS 121

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
             RF  + E +IW +   K+K Y FNY+  K  N+  QMR+ W I         + K   
Sbjct: 122 KNRFVPSTE-IIWVAG--KSKKYYFNYELAKEMNKGKQMRNLWTI---------KAKRHI 169

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HP +KPE LL RI++  +   D ILDPF GSGT+G VAK+  R+FIGIE+ Q+Y + A
Sbjct: 170 TPHPAEKPEELLERIILIGSNEADTILDPFMGSGTTGVVAKRYNRNFIGIEINQEYFEWA 229

Query: 262 TKRIAS--VQP--LGNIELTV 278
            +RI    V+P   G+I+ +V
Sbjct: 230 KERIEKTIVKPSLFGSIKKSV 250


>gi|108805939|ref|YP_645876.1| DNA methylase N-4/N-6 [Rubrobacter xylanophilus DSM 9941]
 gi|108767182|gb|ABG06064.1| DNA methylase N-4/N-6 [Rubrobacter xylanophilus DSM 9941]
          Length = 266

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 97/239 (40%), Positives = 139/239 (58%), Gaps = 9/239 (3%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           + + ++  +P   VD IFADPPY L   G   R    L       WD+         F  
Sbjct: 20  DCVELMRLMPPGGVDAIFADPPYRLSGGGVTVR-GGRLAPVDKGEWDRPLGHRGNHEFNL 78

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
            WL   RRVL+P G++WV G++H IF +G  LQ+L F ++N +VW K +P PN     F 
Sbjct: 79  RWLREARRVLRPGGSIWVSGTHHIIFSLGFALQSLGFRLINSVVWEKPDPPPNALRTAFT 138

Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
           +AHETLIWAS   K +G+TFN+D L   +   Q+ S W +P    +ERL        HPT
Sbjct: 139 HAHETLIWAS---KGRGHTFNHDLLNGPDPTSQLSSVWRMPPPPSAERLHG-----YHPT 190

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           QKP  L+ R L++ST+ G+++ DPF GSGT+   AK+L R F+G E++++Y ++A +RI
Sbjct: 191 QKPLRLVRRALLASTREGELVFDPFTGSGTTAVAAKELGRFFVGAELEREYAELAGRRI 249


>gi|328948545|ref|YP_004365882.1| DNA methylase N-4/N-6 domain protein [Treponema succinifaciens DSM
           2489]
 gi|328448869|gb|AEB14585.1| DNA methylase N-4/N-6 domain protein [Treponema succinifaciens DSM
           2489]
          Length = 292

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 100/247 (40%), Positives = 144/247 (58%), Gaps = 8/247 (3%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +++G+ + +L +   K  D+IFADPPY L  NG +       V      WDK   FE  +
Sbjct: 15  LLQGDCVELLNQFDFK-FDMIFADPPYFLS-NGGISVQSGKQVSVNKGGWDKSHGFEKDN 72

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R WL ACR  LK +GT+W+ G+YHNIF +  ML  L+F ILN + W K+NP PN   
Sbjct: 73  EFNRKWLSACRSHLKDDGTIWISGTYHNIFSVALMLNELDFRILNCVTWAKTNPPPNLSC 132

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ E ++WA  S K   Y FNY+ +K  N   QMR  W++P  +  E+   K    
Sbjct: 133 RFFTHSTEFILWARKSKKVPHY-FNYELMKEINGGTQMRDLWILPAIAKWEKSCGK---- 187

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKP  LL+RI+++STK    ILDPF GS T+G  A  L R F+GI+ + ++++++ 
Sbjct: 188 -HPTQKPLPLLARIILASTKENVWILDPFTGSSTTGIAASLLNRRFLGIDRETEFLELSK 246

Query: 263 KRIASVQ 269
            R   ++
Sbjct: 247 ARREEIE 253


>gi|160888276|ref|ZP_02069279.1| hypothetical protein BACUNI_00686 [Bacteroides uniformis ATCC 8492]
 gi|317480155|ref|ZP_07939265.1| DNA methylase [Bacteroides sp. 4_1_36]
 gi|156862222|gb|EDO55653.1| hypothetical protein BACUNI_00686 [Bacteroides uniformis ATCC 8492]
 gi|316903702|gb|EFV25546.1| DNA methylase [Bacteroides sp. 4_1_36]
          Length = 290

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 101/254 (39%), Positives = 147/254 (57%), Gaps = 8/254 (3%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++ G+ I +L++   K  D+IFADPPY L  NG +      +V      WDK  + E  D
Sbjct: 14  LLHGDCIELLKQFSFK-FDMIFADPPYFLS-NGGISVQSGKMVCVDKGEWDKGGTPEYID 71

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           +F RAW+  C+  LK NGT+W+ G+YHNIF I  +L  L F ILN + W K+NP PN   
Sbjct: 72  SFNRAWISECQNKLKENGTIWISGTYHNIFSIANILTELGFKILNVVTWAKTNPPPNISC 131

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ E +IWA  S K   Y +NY  +K  N + QM   W +P  +  E+   K    
Sbjct: 132 RYFTHSTEFIIWARKSAKITHY-YNYSIMKQINSNKQMTDVWQLPAIARWEKSCGK---- 186

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKP ++LSRI+++ST+ G  ILDPF GS T+G  A  L R F+GI+ +++Y+ ++ 
Sbjct: 187 -HPTQKPLSVLSRIILASTRGGAWILDPFTGSSTTGIAANLLGRRFLGIDREEEYLILSK 245

Query: 263 KRIASVQPLGNIEL 276
            R   ++ +    L
Sbjct: 246 NRKKEIEQIAKFSL 259


>gi|291460930|ref|ZP_06025961.2| DNA (cytosine-5-)-methyltransferase [Fusobacterium periodonticum
           ATCC 33693]
 gi|291379913|gb|EFE87431.1| DNA (cytosine-5-)-methyltransferase [Fusobacterium periodonticum
           ATCC 33693]
          Length = 302

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 104/269 (38%), Positives = 150/269 (55%), Gaps = 30/269 (11%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV--------DAVTDSW 72
           + II G  IS ++KLP   +DLI ADPPYNL   G  ++ D+S          + V   W
Sbjct: 19  NTIINGECISEMKKLPDSCIDLIIADPPYNLS-KGNKWKWDNSTKLKGMGGNWNKVIQEW 77

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           D F+  ++Y  FT+ WL   +R+LKP G++W+ G+YHNI  I  + Q L   I+N+++W 
Sbjct: 78  DNFT-LQSYILFTKEWLSESKRILKPTGSIWIFGTYHNIGIINVVCQLLEIEIINEVIWY 136

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV--------QMRSDW 184
           K N  PN  GRR   +HET++W + + K + Y FNY+  K A+           QMR+ W
Sbjct: 137 KRNAFPNLSGRRLTASHETILWCNKNGKKREYFFNYEFSKNADFSYDSLKSIGKQMRTVW 196

Query: 185 LIPICSGSERLRNKDGEKL----HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
            I          NK+  +L    HPTQKP  +L RI+  ++K  DIIL PF G+G+    
Sbjct: 197 DIS--------NNKEKSELLYGKHPTQKPIRILKRIIELTSKENDIILAPFSGAGSECVA 248

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           AK   R +IGIE+   Y DIA  R+A+++
Sbjct: 249 AKITGRKYIGIEINDFYCDIANNRLANIK 277


>gi|288929718|ref|ZP_06423561.1| DNA (cytosine-5-)-methyltransferase [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288328819|gb|EFC67407.1| DNA (cytosine-5-)-methyltransferase [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 301

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 108/283 (38%), Positives = 151/283 (53%), Gaps = 18/283 (6%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +++GN I +L +   K  + IFADPPY L  NG +      +V      WDK    +  +
Sbjct: 15  LLQGNCIELLGQFDFK-FNTIFADPPYFLS-NGGISCQSGEVVSVNKGDWDKSHGADEDN 72

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R WL  CR  L  NGT+WV G+YHNIF +   L  L + ILN I W K+NP PN   
Sbjct: 73  LFNRRWLEVCRDKLADNGTIWVSGTYHNIFSVANCLAELGYKILNVITWAKTNPPPNISC 132

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ E +IWA  SPK   Y FNY  +K  N++ QM   W +P  +  E+   K    
Sbjct: 133 RYFTHSSEFVIWARKSPKVPHY-FNYQLMKEMNDNKQMTDVWHLPAIAPWEKTCTK---- 187

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKP  LL+RI+++ST+P D +LDPF GS T+G  A    R + GIE +  +++I+ 
Sbjct: 188 -HPTQKPLGLLTRIILASTRPNDWVLDPFAGSSTTGIAANLFGRRYFGIEQEHHFLEISK 246

Query: 263 KRIASV-QP-LGNIELTVL--------TGKRTEPRVAFNLLVE 295
            R   + QP +  I +  +         G +TEP     L+ E
Sbjct: 247 ARHMEIEQPDVATIYIDKILKQLRKLNNGYKTEPLTETMLMCE 289


>gi|256820978|ref|YP_003142257.1| DNA methylase N-4/N-6 domain-containing protein [Capnocytophaga
           ochracea DSM 7271]
 gi|256582561|gb|ACU93696.1| DNA methylase N-4/N-6 domain protein [Capnocytophaga ochracea DSM
           7271]
          Length = 265

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 101/259 (38%), Positives = 148/259 (57%), Gaps = 11/259 (4%)

Query: 14  NSIFEWKDK---IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
           N  F+ +DK   ++ G+++ +L +   K  D++FADPPY L  NG L   +  +V     
Sbjct: 3   NLYFKSQDKSFYLLHGDTMELLPQFHHK-FDMVFADPPYFLS-NGGLTVNNGEIVSVNKG 60

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
            WDK       + F R WL   R V+K + T+W+ G+ HNIF IG +L  L F ILN I 
Sbjct: 61  DWDKSKGIVFVNDFNRQWLTLVREVMKEDATIWISGTMHNIFSIGQILTELGFKILNIIT 120

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W K+NP PNF  R F ++ E +IWA    K   Y FNY  +K  N + QM+  W  P  +
Sbjct: 121 WEKTNPPPNFSCRYFTHSTEQIIWARKEEKTPHY-FNYKLMKELNGNKQMKDVWRFPAIA 179

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
             E+   K     HPTQKP ++L+R++++STKP   ILDPF GS T+G  A  L R F+G
Sbjct: 180 PWEKTCGK-----HPTQKPLSVLTRLILASTKPNAWILDPFTGSSTTGIAANLLGRKFVG 234

Query: 251 IEMKQDYIDIATKRIASVQ 269
           I+ +QD+++++  R   ++
Sbjct: 235 IDKEQDFLELSKLRKLEIE 253


>gi|146297739|ref|YP_001181510.1| DNA methylase N-4/N-6 domain-containing protein
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145411315|gb|ABP68319.1| DNA methylase N-4/N-6 domain protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 270

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 98/264 (37%), Positives = 153/264 (57%), Gaps = 33/264 (12%)

Query: 23  IIKGNSISVL-EKLPAKSVDLIFADPPYNL----------QLNGQLYRPDHSLVDAVTDS 71
           I+ G+ ++++ E +P++S+DLI+ADPPYNL          +  G  Y+ +        DS
Sbjct: 6   ILHGDCVTIMKEHIPSESIDLIYADPPYNLSGRDLILKNNKTGGPFYKMNEEW-----DS 60

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           WD    ++ Y  FT  WLLA   VLK NG+L++  +YHNI  +  + + + F + N + W
Sbjct: 61  WD----YDKYCEFTYNWLLASYSVLKSNGSLYISCTYHNIGEVIFLAKKIGFKLNNILTW 116

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE------DVQMRSDWL 185
            K+N MPN   R F++  E + W    P   G+ F+Y+ +K  N        ++   D+ 
Sbjct: 117 VKTNAMPNITKRTFKHTTEFVCWFVKGP---GWKFHYNEIKMLNPRKTKDGSIKQMDDFF 173

Query: 186 ----IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
               +P+  G ER+++ +G   HP QKPE LL  I+ +S+  GDI+LDPFFG+GT+G VA
Sbjct: 174 DFFEMPLVQGKERIKSDNGRAAHPNQKPEKLLEIIITASSDEGDIVLDPFFGTGTTGVVA 233

Query: 242 KKLRRSFIGIEMKQDYIDIATKRI 265
           +++ R +IGIE+ + YI IA KRI
Sbjct: 234 ERMNRKWIGIEINETYIKIAKKRI 257


>gi|325299176|ref|YP_004259093.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides
           salanitronis DSM 18170]
 gi|324318729|gb|ADY36620.1| DNA methylase N-4/N-6 domain protein [Bacteroides salanitronis DSM
           18170]
          Length = 293

 Score =  182 bits (463), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 98/242 (40%), Positives = 136/242 (56%), Gaps = 8/242 (3%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++KG+ I +L     K  D+IFADPPY+L  NG +      +V      WD+   +E   
Sbjct: 15  LLKGDCIELLHSFDFK-FDMIFADPPYHLS-NGGISVQSGKMVSVNKGDWDRSKGYEEDY 72

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R+W+ ACR  LK NGT+W+ G+YHNIF +   L  L F ILN I W K+NP PN   
Sbjct: 73  LFDRSWIEACRNKLKSNGTIWISGTYHNIFSVARCLTELGFKILNCITWEKTNPPPNLSC 132

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           + F ++ E ++WA    K   Y FNY+ +K  N   QMR  W +P     E+   K    
Sbjct: 133 KYFTHSAEYILWARKEQKVPHY-FNYELMKKINGGTQMRDVWRLPAIVRWEKSCGK---- 187

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKP  +LSRI+ +ST P   ILDPF GS T+G  A  L R F+GI+  ++++ ++ 
Sbjct: 188 -HPTQKPLCVLSRIIQASTLPSAWILDPFTGSSTTGIAANLLGRRFLGIDQNEEFLKMSK 246

Query: 263 KR 264
            R
Sbjct: 247 AR 248


>gi|81427756|ref|YP_394755.1| putative adenine-specifique DNA methyltransferase [Lactobacillus
           sakei subsp. sakei 23K]
 gi|78609397|emb|CAI54443.1| Putative adenine-specifique DNA methyltransferase [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 261

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 100/262 (38%), Positives = 149/262 (56%), Gaps = 14/262 (5%)

Query: 19  WKDKIIK---GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           +KD+++K    ++   +++ P+ SVD+I ADPPY L  NG        +V      WDK 
Sbjct: 9   YKDELVKLICSDTFECMQRFPSNSVDVIIADPPYFLS-NGGFSNSGGKMVSVNKGEWDKI 67

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
           +  +    +TR  + +  R+LK +GT+WV GS HNI+ +G +L    F ILN+I W+KSN
Sbjct: 68  NDVKPEVFYTRL-IRSADRILKKDGTIWVFGSMHNIYILGYLLPKYGFKILNNITWQKSN 126

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P PN   R F ++ ET+IWA      +   FNYD +K  N   QM+  W  P  +  ER 
Sbjct: 127 PAPNLSKRMFTHSTETIIWAKKESGKQ--FFNYDLMKELNHSSQMKDVWTTPTINNYERR 184

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
             +     HPTQKP +++ R++ +ST  G I+LDPF GSGT+     +     IGI+  Q
Sbjct: 185 FGR-----HPTQKPLSVIDRMVKASTDSGMILLDPFVGSGTTAVAGARNGIRTIGIDNSQ 239

Query: 256 DYIDIATKRIASVQ--PLGNIE 275
           DY++IA KR+++ Q   LG I+
Sbjct: 240 DYLNIAIKRVSNFQEEKLGKIK 261


>gi|228473121|ref|ZP_04057878.1| DNA-methyltransferase [Capnocytophaga gingivalis ATCC 33624]
 gi|228275703|gb|EEK14480.1| DNA-methyltransferase [Capnocytophaga gingivalis ATCC 33624]
          Length = 270

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 98/256 (38%), Positives = 147/256 (57%), Gaps = 11/256 (4%)

Query: 17  FEWKDK---IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           F+ +DK   ++ G+++ +L +   K  D++FADPPY L  NG L   +  +V      WD
Sbjct: 6   FKSQDKSFYLLHGDTMELLPQFHRK-FDMVFADPPYFLS-NGGLTVNNGEIVSVDKGDWD 63

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           K       + F R WL   R V+K   T+W+ G+ HNIF +G +L  L F ILN I W K
Sbjct: 64  KSKGIAFVNDFNRQWLTLVREVMKEEATIWISGTMHNIFSVGQILTELGFKILNIITWEK 123

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
           +NP PNF  R F ++ E +IWA    K   Y FNY+ +K  N + QM+  W  P  +  E
Sbjct: 124 TNPPPNFSCRYFTHSTEQIIWARKEEKTPHY-FNYELMKQLNGNKQMKDVWRFPAIAPWE 182

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           +   K     HPTQKP ++L+R++++ST+    ILDPF GS T+G  A  L R F+GI+ 
Sbjct: 183 KSCGK-----HPTQKPLSVLTRLILASTQTNAWILDPFTGSSTTGIAANLLVRKFVGIDK 237

Query: 254 KQDYIDIATKRIASVQ 269
           +QD+++++ KR   ++
Sbjct: 238 EQDFLELSKKRKFEIE 253


>gi|160884890|ref|ZP_02065893.1| hypothetical protein BACOVA_02880 [Bacteroides ovatus ATCC 8483]
 gi|237716944|ref|ZP_04547425.1| type II restriction enzyme M protein [Bacteroides sp. D1]
 gi|262405713|ref|ZP_06082263.1| DNA methylase [Bacteroides sp. 2_1_22]
 gi|294643396|ref|ZP_06721215.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CC 2a]
 gi|294810621|ref|ZP_06769271.1| DNA (cytosine-5-)-methyltransferase [Bacteroides xylanisolvens SD
           CC 1b]
 gi|156109925|gb|EDO11670.1| hypothetical protein BACOVA_02880 [Bacteroides ovatus ATCC 8483]
 gi|229442927|gb|EEO48718.1| type II restriction enzyme M protein [Bacteroides sp. D1]
 gi|262356588|gb|EEZ05678.1| DNA methylase [Bacteroides sp. 2_1_22]
 gi|292641274|gb|EFF59473.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CC 2a]
 gi|294442163|gb|EFG10980.1| DNA (cytosine-5-)-methyltransferase [Bacteroides xylanisolvens SD
           CC 1b]
 gi|295085863|emb|CBK67386.1| DNA modification methylase [Bacteroides xylanisolvens XB1A]
          Length = 279

 Score =  179 bits (454), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 94/224 (41%), Positives = 130/224 (58%), Gaps = 7/224 (3%)

Query: 41  DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG 100
           D+IFADPPY L  NG +      +V      WD+    E+ D F   W+  CR  LK NG
Sbjct: 33  DMIFADPPYFLS-NGGISVQSGKIVCVDKGDWDRSFGKESIDNFNYKWIADCRDKLKDNG 91

Query: 101 TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
           T+W+ G+YHNIF +   L  L F ILN I W K+NP PN   R F  + E +IWA  +  
Sbjct: 92  TIWISGTYHNIFSVANQLTELGFKILNCITWVKTNPPPNISCRYFTYSAEYIIWARKNNN 151

Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
              Y +NYD +K +N + QM   W +    G E++  K     HPTQKP  LL+R++ +S
Sbjct: 152 VSHY-YNYDFMKMSNANHQMTDVWNLSAIEGWEKIHGK-----HPTQKPINLLARVIAAS 205

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           T+PG  ILDPF GS T+G  A  L+R F+GI+++Q Y++++  R
Sbjct: 206 TRPGAWILDPFAGSSTTGVTANLLKRRFLGIDIEQKYLELSILR 249


>gi|257461260|ref|ZP_05626357.1| DNA methylase [Campylobacter gracilis RM3268]
 gi|257441288|gb|EEV16434.1| DNA methylase [Campylobacter gracilis RM3268]
          Length = 271

 Score =  179 bits (453), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 99/243 (40%), Positives = 137/243 (56%), Gaps = 8/243 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+ KG+  ++L K   +  DLIFADPPY L  +G L   +  +V      WDK    +  
Sbjct: 9   KLFKGDCFNILPKFKGE-FDLIFADPPYFLSNDG-LSIQNGQIVSVNKGEWDKSYGIDEI 66

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   WL   +  L  NG++ + G+YHNIF IG  LQ L++ ILN I W K+NP PNF 
Sbjct: 67  DKFNLEWLALAKDALANNGSVMISGTYHNIFSIGRALQKLDYKILNVITWAKTNPPPNFS 126

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R   +  E +IWA  S K K + FNY+ +K  N + QMR  W +P  +  E+   K   
Sbjct: 127 CRYLTHGSEQIIWARKSEKFK-HIFNYELMKKLNGNKQMRDVWSLPAIAPWEKACGK--- 182

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP  LL R+++ ++    ++ DPF GS T+G  A  L R F+GIE + ++IDIA
Sbjct: 183 --HPTQKPLPLLVRLILMASTQNSVVCDPFAGSATTGVAANLLGRKFVGIEKEDEFIDIA 240

Query: 262 TKR 264
            KR
Sbjct: 241 VKR 243


>gi|213963061|ref|ZP_03391320.1| DNA methylase [Capnocytophaga sputigena Capno]
 gi|213954402|gb|EEB65725.1| DNA methylase [Capnocytophaga sputigena Capno]
          Length = 265

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 96/256 (37%), Positives = 146/256 (57%), Gaps = 11/256 (4%)

Query: 17  FEWKDK---IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           F+ +DK   ++ G+++ +L +   K  D++FADPPY L  NG L   +  +V      WD
Sbjct: 6   FKSQDKSFYLLHGDTMELLPQFHRK-FDMVFADPPYFLS-NGGLTVNNGEIVSVNKGDWD 63

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           K       + F R WL   R V+K   T+W+ G+ HNIF +G +L  L F ILN I W K
Sbjct: 64  KSKGIAFVNDFNRQWLTLVREVMKEEATIWISGTMHNIFSVGQILTELGFKILNIITWEK 123

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
           +NP PNF  R F ++ E ++WA    K   Y FNY+ +K  N + QM+  W  P  +  E
Sbjct: 124 TNPPPNFSCRYFTHSTEHIVWARKEEKTPHY-FNYELMKELNGNKQMKDVWRFPAIAPWE 182

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           +   K     HPTQKP ++L+R++++ST+P   ILDPF GS T+G  A    R F+GI+ 
Sbjct: 183 KSCGK-----HPTQKPLSVLTRLILASTQPNTWILDPFTGSSTTGIAANLQGRKFVGIDK 237

Query: 254 KQDYIDIATKRIASVQ 269
           +Q++++++  R   +Q
Sbjct: 238 EQEFLELSKNRKLEIQ 253


>gi|313207303|ref|YP_004046480.1| DNA methylase n-4/n-6 domain protein [Riemerella anatipestifer DSM
           15868]
 gi|312446619|gb|ADQ82974.1| DNA methylase N-4/N-6 domain protein [Riemerella anatipestifer DSM
           15868]
 gi|315022082|gb|EFT35112.1| DNA methylase N-4/N-6 domain protein [Riemerella anatipestifer
           RA-YM]
 gi|325335248|gb|ADZ11522.1| DNA modification methylase [Riemerella anatipestifer RA-GD]
          Length = 299

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 94/247 (38%), Positives = 141/247 (57%), Gaps = 8/247 (3%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++ G+++ +L K   K  D++FADPPY L  NG L   +  +V      WDK   FE  +
Sbjct: 15  LLHGDTMELLPKFEHK-FDMVFADPPYFLSNNG-LSIQNGKIVSVNKGKWDKSEGFEFIN 72

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R WL   R  +K + T+W+ G+ HNIF +G +L  L F ILN + W K+NP PNF  
Sbjct: 73  DFNRKWLSLVREKMKGDATIWISGTMHNIFSVGQILTELGFKILNIVTWEKTNPPPNFSC 132

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F  + E +IWA  + K   Y FNY  +K  N + QM+  W +P  +  E+   K    
Sbjct: 133 RYFTYSTEQIIWARKTEKVPHY-FNYKLMKQLNGNRQMKDVWKLPAIAPWEKSCGK---- 187

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKP ++L+R++++STKP   ILDP  GS T+G  A    R F+GI+ +++++ I+ 
Sbjct: 188 -HPTQKPLSVLTRLILASTKPNAWILDPLAGSSTTGIAANLANRRFLGIDQEEEFLTISK 246

Query: 263 KRIASVQ 269
            R   ++
Sbjct: 247 NRKLEIE 253


>gi|210135511|ref|YP_002301950.1| hypothetical protein HPP12_1318 [Helicobacter pylori P12]
 gi|210133479|gb|ACJ08470.1| hypothetical protein HPP12_1318 [Helicobacter pylori P12]
          Length = 159

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 80/140 (57%), Positives = 98/140 (70%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF SFE YD
Sbjct: 11  IIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKFGSFEEYD 70

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   WL  C+R+LK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSNP+PNF G
Sbjct: 71  TFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSNPVPNFAG 130

Query: 143 RRFQNAHETLIWASPSPKAK 162
           +R  NAHETLIW +   K K
Sbjct: 131 KRLCNAHETLIWCAKKIKEK 150


>gi|282878857|ref|ZP_06287624.1| DNA (cytosine-5-)-methyltransferase [Prevotella buccalis ATCC
           35310]
 gi|281299065|gb|EFA91467.1| DNA (cytosine-5-)-methyltransferase [Prevotella buccalis ATCC
           35310]
          Length = 295

 Score =  176 bits (445), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 99/242 (40%), Positives = 136/242 (56%), Gaps = 8/242 (3%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +I+G+ +  L K      D++FADPPY L   G  Y+    +V      WDK  + E  D
Sbjct: 18  LIQGDCVETLSKFKF-GFDMVFADPPYFLSGGGISYQ-SGKVVCVDKGDWDKPVTSEELD 75

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           AF   WL A R  +K N T+W+ G++HNIF +   L  L F ILN I W K+NP PN   
Sbjct: 76  AFNLRWLTAVREHMKDNATIWISGTHHNIFSVQQQLLKLGFKILNIITWAKTNPPPNISC 135

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F  + E +IWA  SPK   Y FNY  +K  N D QM   W +P     E+   K    
Sbjct: 136 RYFTFSTEFIIWARKSPKVPHY-FNYALMKKLNGDKQMTDVWQLPSIGKWEKSCGK---- 190

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKP  +L+RI+ +S++P   ILDPF GSGT+G  A  L R+++G+E  +D++ ++ 
Sbjct: 191 -HPTQKPLGVLARIIQASSEPNSWILDPFSGSGTTGIAANLLGRNYLGLEKDKDFLLMSK 249

Query: 263 KR 264
           KR
Sbjct: 250 KR 251


>gi|315224178|ref|ZP_07866018.1| DNA (cytosine-5-)-methyltransferase [Capnocytophaga ochracea F0287]
 gi|314945911|gb|EFS97920.1| DNA (cytosine-5-)-methyltransferase [Capnocytophaga ochracea F0287]
          Length = 265

 Score =  176 bits (445), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 97/256 (37%), Positives = 145/256 (56%), Gaps = 11/256 (4%)

Query: 17  FEWKDK---IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           F+ +DK   ++ G+++ +L +   K  D++FADPPY L  NG L   +  +V      WD
Sbjct: 6   FKSQDKSFYLLHGDTMELLPQFHRK-FDMVFADPPYFLS-NGGLTVNNGEIVSVNKGDWD 63

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           K       + F R WL   R V+K   T+W+ G+ HNIF IG +L  L   ILN I W K
Sbjct: 64  KSKGIAFVNDFNRQWLTLVREVMKEEATIWISGTMHNIFSIGQILTELGLKILNIITWEK 123

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
           +NP PNF  R F ++ E +IWA    K   Y FNY+ +K  N + QM+  W  P  +  E
Sbjct: 124 TNPPPNFSCRYFTHSTEQIIWARKEEKTPHY-FNYELMKELNGNKQMKDVWRFPAIAPWE 182

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           +   K     HPTQKP ++L+R++++STKP   ILDPF GS T+G  A    R F+GI+ 
Sbjct: 183 KSCGK-----HPTQKPLSVLTRLILASTKPDAWILDPFTGSSTTGIAANLQGRKFVGIDR 237

Query: 254 KQDYIDIATKRIASVQ 269
           ++D+++++  R   ++
Sbjct: 238 EKDFLELSKLRKLEIE 253


>gi|154148672|ref|YP_001406783.1| DNA methylase [Campylobacter hominis ATCC BAA-381]
 gi|153804681|gb|ABS51688.1| DNA methylase [Campylobacter hominis ATCC BAA-381]
          Length = 271

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 98/239 (41%), Positives = 137/239 (57%), Gaps = 8/239 (3%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G++  +L K  +K  DLIFADPPY L  +G L      +V     +WDK    +  D F 
Sbjct: 16  GDTFEILPKFKSK-FDLIFADPPYFLSNDG-LSIQSGRIVSVNKGNWDKSYGIDEIDKFN 73

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
             WL   +  L  NG++ + G+YHNIF IG  LQ L+F ILN I W+K+NP PNF  R  
Sbjct: 74  LEWLEMAKNALNDNGSVMISGTYHNIFSIGRALQKLDFKILNIITWQKTNPPPNFSCRYL 133

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
            ++ E +IWA  S K K + FNY+ +K  N++ QM+  W  P  +  E+   K     HP
Sbjct: 134 THSTEQIIWARKSEKHK-HIFNYELMKKINDNKQMKDVWAFPAIAPWEKSCGK-----HP 187

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           TQKP  LL R+++ ++     I DPF GS T+G  A  L R+FIGIE ++++IDI+  R
Sbjct: 188 TQKPLRLLVRLILMASYENSTICDPFSGSSTTGIAANLLGRNFIGIEKEKEFIDISLAR 246


>gi|68480349|gb|AAY97905.1| Mva1269I methyltransferase [Kocuria varians]
          Length = 626

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 99/269 (36%), Positives = 144/269 (53%), Gaps = 27/269 (10%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS-- 77
           K++I   + I  ++ L   S+D+I ADPPYNL   G     +   +      WDK     
Sbjct: 4   KNEIYNMDCIEGMKLLKENSIDIIIADPPYNLSKGGNWSWKNEDNLKGFGGKWDKVMQNW 63

Query: 78  ----FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                  Y  FT  WL   +R+LKP G+LWV G+YHNI  I   +Q L   ++N+++W K
Sbjct: 64  DNMPISDYFTFTLKWLSEAKRILKPTGSLWVFGTYHNIGIINFAMQILEIEMINEVIWFK 123

Query: 134 SNPMPNFRGRRFQNAHETLIWA-SPSPKAKGYTFNYDALKAANEDV--------QMRSDW 184
            N  PN  GRR   +HET+IWA S + K + Y FNY+  K  + D         QMR+ W
Sbjct: 124 RNSFPNLSGRRLTASHETIIWAHSGTAKDREYFFNYEMSKNHDYDSDLIKQPLKQMRTVW 183

Query: 185 LIPICSGSERLRNKDGEKL----HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
            IP         NK  E+L    HPTQK E ++ R++  S K GD++L PF G+GT   V
Sbjct: 184 DIP--------NNKKKEELLYGKHPTQKVEKVIDRMIRISAKEGDLLLSPFCGAGTECVV 235

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           AKKL   +I  E++++Y++++  R+ + Q
Sbjct: 236 AKKLGLDYIAFELEEEYVNLSKTRLLNTQ 264


>gi|237753354|ref|ZP_04583834.1| DNA methylase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375621|gb|EEO25712.1| DNA methylase [Helicobacter winghamensis ATCC BAA-430]
          Length = 284

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 102/245 (41%), Positives = 141/245 (57%), Gaps = 8/245 (3%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K  + +G+  ++L ++  +S D+IFADPPY L  NG L      +V      WD+  + +
Sbjct: 18  KFSLYQGDCNALLPQM-KESFDVIFADPPYFLS-NGGLSIQSGKIVSVNKGEWDRGENID 75

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
             D F   W+   +  LKP G++ + G+YHNIF +G  LQ L+F ILN I W+K+NP PN
Sbjct: 76  EIDRFNTEWIANAKIALKPTGSIMISGTYHNIFSLGRALQKLDFKILNIITWQKTNPPPN 135

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           F  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  P  +  E+   K 
Sbjct: 136 FSCRYLTHSTEQIIWARKSHKHK-HIFNYEILKKLNNDKQMRDVWSFPAIAPWEKTFGK- 193

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
               HPTQKP ALL R+L+ ++    II DPF GS T+G  A  L R FIGIE +  +ID
Sbjct: 194 ----HPTQKPLALLVRLLLMASNEDSIICDPFSGSSTTGIAANLLHRQFIGIERESSFID 249

Query: 260 IATKR 264
           ++ KR
Sbjct: 250 LSIKR 254


>gi|322378612|ref|ZP_08053050.1| type I restriction enzyme M protein (hsdM) [Helicobacter suis HS1]
 gi|322380096|ref|ZP_08054350.1| type I restriction enzyme M [Helicobacter suis HS5]
 gi|321147466|gb|EFX42112.1| type I restriction enzyme M [Helicobacter suis HS5]
 gi|321148972|gb|EFX43434.1| type I restriction enzyme M protein (hsdM) [Helicobacter suis HS1]
          Length = 274

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 100/259 (38%), Positives = 143/259 (55%), Gaps = 11/259 (4%)

Query: 9   INENQNSIF---EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV 65
           +N     IF   ++K  +   +   +L  +P +  DLIFADPPY L  NG L      +V
Sbjct: 1   MNSKPKPIFVSEDFKFTLYHNDCKEILAHMP-ECFDLIFADPPYFLSNNG-LTIESGQIV 58

Query: 66  DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
                SWD+    +   AF   WL   +  LKP+G++ +  + HN+F +G  LQ L F +
Sbjct: 59  SVNKGSWDRLEGIDQIHAFNLEWLRLAKEALKPSGSILISATQHNLFSLGLALQTLGFKL 118

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
           LN I W KSNP PNF  R   +A E ++WA  SPK   + FNY+ +KA N+  QMR  W 
Sbjct: 119 LNTITWHKSNPPPNFSCRTLVHASEQILWARKSPK-HAHIFNYERMKALNQGKQMRDVWT 177

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P  +  E+   K     HPTQKP  LL R+L+ ++    +I DPF GS ++G  A  L 
Sbjct: 178 LPSIASFEKKCGK-----HPTQKPLNLLLRLLLMASNKESLIGDPFSGSSSTGIAANLLG 232

Query: 246 RSFIGIEMKQDYIDIATKR 264
           RSF+G+E +QD+I ++ KR
Sbjct: 233 RSFVGMEKEQDFIKLSIKR 251


>gi|317008767|gb|ADU79347.1| type II restriction enzyme M protein (hsdM) [Helicobacter pylori
           India7]
          Length = 277

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 105/258 (40%), Positives = 145/258 (56%), Gaps = 11/258 (4%)

Query: 10  NENQNSIFEWKDKII---KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           NE    IF+ +D++    +G+   VL +      DLIFADPPY L  +G L      +V 
Sbjct: 7   NETARPIFKSQDQLFTLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVS 64

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                WDK       D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F IL
Sbjct: 65  VNKGDWDKEDGINGIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGCILQKLDFKIL 124

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N+D QMR  W  
Sbjct: 125 NLITWQKTNPPPNFSCRYLTHSAEQIIWARKSRKHK-HVFNYEVLKKINKDKQMRDVWSF 183

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E++  K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R
Sbjct: 184 PAIAPWEKVNGK-----HPTQKPLALLVRLLLMASDKNSLIGDPFSGSSTTGIAANLLKR 238

Query: 247 SFIGIEMKQDYIDIATKR 264
            FIGIE + ++I I+  R
Sbjct: 239 QFIGIEKESEFIKISINR 256


>gi|153951969|ref|YP_001398881.1| DNA methylase [Campylobacter jejuni subsp. doylei 269.97]
 gi|152939415|gb|ABS44156.1| DNA methylase [Campylobacter jejuni subsp. doylei 269.97]
          Length = 282

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 100/251 (39%), Positives = 140/251 (55%), Gaps = 9/251 (3%)

Query: 16  IFEWKDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           IF  KD+  I+  N  + L     K  DLIFADPPY L  +G L   +  +V      WD
Sbjct: 8   IFTSKDENFILYQNDCNKLLPKFEKQFDLIFADPPYFLSNDG-LSIQNGKIVSVNKGDWD 66

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           K +  E  D F   WL   +  L+  G++ + G+YHNIF +G +LQ L+F ILN I W+K
Sbjct: 67  KGNDIEKIDEFNLKWLSNAKIALQDTGSILICGTYHNIFSLGRILQKLDFKILNIITWQK 126

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
           +NP PNF  R   ++ E +IWA  S K K + FNY+ L+  N + QMR  W     +  E
Sbjct: 127 TNPPPNFSCRYLTHSTEQIIWARKSHKYK-HIFNYEILRFLNSNKQMRDVWTFNAIAPWE 185

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           +   K     HPTQKP ALL+R+++ ++    +I DPF GS T+G  A  L R FIG E 
Sbjct: 186 KTNGK-----HPTQKPLALLTRLILMASNEDCLICDPFSGSSTTGIGANLLNRKFIGFEK 240

Query: 254 KQDYIDIATKR 264
           + ++I+I+  R
Sbjct: 241 ESEFIEISIAR 251


>gi|281422930|ref|ZP_06253929.1| modification methylase CcrMI [Prevotella copri DSM 18205]
 gi|281403022|gb|EFB33702.1| modification methylase CcrMI [Prevotella copri DSM 18205]
          Length = 394

 Score =  170 bits (430), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 99/247 (40%), Positives = 140/247 (56%), Gaps = 8/247 (3%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+S  +L++L  K VD+IFADPPY L  + +  +   + V    D WDK  S+E  +
Sbjct: 13  LYHGDSNIILDQLEEK-VDMIFADPPYFLSNSKKTIQFGKTKVCDKGD-WDKVRSWEEIN 70

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           +F R W+  CR++LK NGT+WV G+YHNIF +   L    F ILN IVW+K +P P   G
Sbjct: 71  SFNRIWIEKCRKLLKENGTIWVCGTYHNIFSVEQCLIEFGFKILNIIVWQKLDPPPTPYG 130

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
            R   + E ++WA  +     + F+YD LK  N   +M   W        ER   K    
Sbjct: 131 GRLNFSAEYIVWARKNTNVP-HCFHYDLLKQMNGGKEMPDVWKFARPGFWERKCGK---- 185

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKP  LL RI+ + T+   IILDPF GS T+G  A  L R FIGI+M+++Y+D   
Sbjct: 186 -HPTQKPLRLLYRIVQTCTEKEGIILDPFCGSCTTGIAANLLSRKFIGIDMERNYLDYGI 244

Query: 263 KRIASVQ 269
           +R + ++
Sbjct: 245 RRKSEIK 251


>gi|109948003|ref|YP_665231.1| DNA methyltransferase [Helicobacter acinonychis str. Sheeba]
 gi|109715224|emb|CAK00232.1| DNA methyltransferase [Helicobacter acinonychis str. Sheeba]
          Length = 278

 Score =  170 bits (430), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 105/258 (40%), Positives = 146/258 (56%), Gaps = 11/258 (4%)

Query: 10  NENQNSIFEWKDKII---KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           N+  +S+FE  DK+    +G+   VL  L   + DLIFADPPY L  +G L      +V 
Sbjct: 5   NQTPHSVFESTDKLFTLYQGDCNEVLS-LFENTFDLIFADPPYFLSNDG-LSIQSGKIVS 62

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                WDK       D F   W+ + ++ LK  G+L + G+YHN+F +G +LQ L+F IL
Sbjct: 63  VNKGDWDKEERINDIDEFNYQWINSAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKIL 122

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  
Sbjct: 123 NLITWQKTNPPPNFSCRYLTHSAEQIIWARKSHKHK-HVFNYEVLKKINSDKQMRDVWSF 181

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R
Sbjct: 182 PAIAPWEKTNGK-----HPTQKPLALLVRLLLMASNENSLIGDPFSGSSTTGIAANLLKR 236

Query: 247 SFIGIEMKQDYIDIATKR 264
            FIGIE + ++I ++  R
Sbjct: 237 KFIGIEKESEFIKMSINR 254


>gi|317179900|dbj|BAJ57686.1| Type II restriction enzyme M protein [Helicobacter pylori F32]
          Length = 277

 Score =  170 bits (430), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 106/258 (41%), Positives = 145/258 (56%), Gaps = 11/258 (4%)

Query: 10  NENQNSIFEWKDKII---KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           NE    IF+ +D++    +G+   VL +      DLIFADPPY L  +G L      +V 
Sbjct: 7   NEIARPIFKSQDQLFTLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVS 64

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                WDK  S    D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F IL
Sbjct: 65  VNKGDWDKEESVNDIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRVLQKLDFKIL 124

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  
Sbjct: 125 NLITWQKTNPPPNFSCRYLTHSAEQIIWARKSHKHK-HVFNYEVLKKINNDKQMRDVWSF 183

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E++  K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R
Sbjct: 184 PAIAPWEKVNGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKR 238

Query: 247 SFIGIEMKQDYIDIATKR 264
            FIGIE + ++I I+  R
Sbjct: 239 QFIGIEKESEFIQISMDR 256


>gi|330995399|ref|ZP_08319309.1| DNA (cytosine-5-)-methyltransferase [Paraprevotella xylaniphila YIT
           11841]
 gi|329575894|gb|EGG57418.1| DNA (cytosine-5-)-methyltransferase [Paraprevotella xylaniphila YIT
           11841]
          Length = 289

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 98/251 (39%), Positives = 133/251 (52%), Gaps = 8/251 (3%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+   +L+    K  D+IFADPPY L  NG +      +V      WDK  S E   
Sbjct: 15  LAHGDCFKLLKDFDFK-FDMIFADPPYFLS-NGGISLQRGKVVCVDKGDWDKGKSQEDML 72

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           AF   WL  CR  LK NGT+W+ G+YHNIF +   L  L + ILN + W+K+NP  N   
Sbjct: 73  AFNMEWLRLCRDKLKDNGTIWISGTYHNIFSVANCLTELGYKILNVVTWQKTNPPANISC 132

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F  + E +IWA    K   + FNYD +K  N+  QM   W +P     E+   K    
Sbjct: 133 RFFTYSTEFVIWARKMQKIP-HKFNYDLMKELNDGKQMTDVWRMPAIGRWEKTCGK---- 187

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKP  LL R++++ST  GD ILDPF GS T+G  A    R F G+E ++D+  ++ 
Sbjct: 188 -HPTQKPLRLLVRMILASTNQGDWILDPFSGSSTTGIAANLCGRRFAGLEQEEDFCKLSK 246

Query: 263 KRIASVQPLGN 273
            R   ++ L N
Sbjct: 247 ARREEIESLEN 257


>gi|260577363|ref|ZP_05845334.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sp. SW2]
 gi|259020436|gb|EEW23761.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sp. SW2]
          Length = 310

 Score =  169 bits (429), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 95/259 (36%), Positives = 140/259 (54%), Gaps = 20/259 (7%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS----- 76
           ++  GN I ++ +LP +SVD+I ADPPYN     +L    +  +     SW K +     
Sbjct: 54  RVYHGNFIEMVSQLPDQSVDIIIADPPYNASKGNELTM-QYGTLPGFGGSWRKIAQVWDD 112

Query: 77  -SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            S   Y AFT +WL   RRVLKP G++WV G+YH+       +Q L   I+N+IVW K N
Sbjct: 113 MSLHDYLAFTLSWLTEARRVLKPTGSMWVHGTYHSAGVTNVAMQMLEVEIINEIVWYKRN 172

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK---AANEDV-----QMRSDWLIP 187
             PN  GRR   +HET++WA    K + Y FNY+  K    +++D+     QMR+ W +P
Sbjct: 173 SFPNLAGRRLTASHETILWAHRGGK-RAYRFNYEHSKFGDFSDDDLKSPGKQMRTVWDLP 231

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
               + + R++     HP QKP  L  R +  S  PGD+ L PF GSG+    A++    
Sbjct: 232 ----NNKPRHEQAHGKHPAQKPVRLAKRFIELSAGPGDLCLVPFAGSGSECVAAQEAGLH 287

Query: 248 FIGIEMKQDYIDIATKRIA 266
           FIG +  + Y++IA  R++
Sbjct: 288 FIGFDTDESYVEIARARLS 306


>gi|254778814|ref|YP_003056919.1| M.HpyAIII, type II adenine methyltransferase [Helicobacter pylori
           B38]
 gi|254000725|emb|CAX28645.1| M.HpyAIII, type II adenine methyltransferase [Helicobacter pylori
           B38]
          Length = 277

 Score =  169 bits (429), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 105/258 (40%), Positives = 146/258 (56%), Gaps = 11/258 (4%)

Query: 10  NENQNSIFEWKDKII---KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           NE    IF+ +D++    +G+   VL +    + DLIFADPPY L  +G L      +V 
Sbjct: 7   NEIARPIFKSQDQLFTLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIVS 64

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                WDK +     D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F IL
Sbjct: 65  VNKGDWDKENGINGIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKIL 124

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  
Sbjct: 125 NLITWQKTNPPPNFSCRYLTHSAEQIIWARKSHKHK-HVFNYEVLKKINNDKQMRDVWSF 183

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E++  K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R
Sbjct: 184 PAITPWEKVNGK-----HPTQKPLALLVRLLLMASDGNSLIGDPFSGSSTTGIAANLLKR 238

Query: 247 SFIGIEMKQDYIDIATKR 264
            FIGIE + ++I I+  R
Sbjct: 239 EFIGIEKESEFIKISMNR 256


>gi|15644722|ref|NP_206892.1| type II restriction enzyme M protein (hsdM) [Helicobacter pylori
           26695]
 gi|2313175|gb|AAD07163.1| type II restriction enzyme M protein (hsdM) [Helicobacter pylori
           26695]
          Length = 277

 Score =  169 bits (429), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 105/258 (40%), Positives = 144/258 (55%), Gaps = 11/258 (4%)

Query: 10  NENQNSIFEWKDKII---KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           NE    IF+ +D++    +G+   VL +      DLIFADPPY L  +G L      +V 
Sbjct: 7   NEIARPIFKSQDQLFTLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVS 64

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                WDK       D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F IL
Sbjct: 65  VNKGDWDKEDGINGIDEFNYQWINNAKKALKDTGSLLISGTYHNIFSLGCVLQKLDFKIL 124

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  
Sbjct: 125 NLITWQKTNPPPNFSCRYLTHSAEQIIWARKSRKHK-HVFNYEVLKKINNDKQMRDVWSF 183

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E++  K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R
Sbjct: 184 PAIAPWEKVNGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKR 238

Query: 247 SFIGIEMKQDYIDIATKR 264
            FIGIE + ++I I+  R
Sbjct: 239 EFIGIEKESEFIKISMDR 256


>gi|308061386|gb|ADO03274.1| type II restriction enzyme M protein (hsdM) [Helicobacter pylori
           Cuz20]
          Length = 276

 Score =  169 bits (427), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 105/258 (40%), Positives = 144/258 (55%), Gaps = 11/258 (4%)

Query: 10  NENQNSIFEWKDKII---KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           NE    IF+ +D++    +G+   VL +      DLIFADPPY L  +G L      +V 
Sbjct: 7   NEIARPIFKSQDQLFTLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVS 64

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                WDK  S    D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F IL
Sbjct: 65  VNKGDWDKEESVNDIDGFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKIL 124

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  
Sbjct: 125 NLITWQKTNPPPNFSCRYLTHSAEQIIWARKSHKHK-HVFNYEVLKKINNDKQMRDVWSF 183

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E++  K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L R
Sbjct: 184 PAIAPWEKVNGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLER 238

Query: 247 SFIGIEMKQDYIDIATKR 264
            FIGIE + +++ I+  R
Sbjct: 239 QFIGIEKESEFVKISMDR 256


>gi|317176913|dbj|BAJ54702.1| Type II restriction enzyme M protein [Helicobacter pylori F16]
          Length = 276

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 105/258 (40%), Positives = 145/258 (56%), Gaps = 11/258 (4%)

Query: 10  NENQNSIFEWKDKII---KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           NE    IF+ +D++    +G+   VL +      DLIFADPPY L  +G L   +  +V 
Sbjct: 7   NEIACPIFKSQDQLFTLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQNGKIVS 64

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                WDK  S    D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F IL
Sbjct: 65  VNKGDWDKEESVNDIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKIL 124

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  
Sbjct: 125 NLITWQKTNPPPNFSCRYLTHSAEQIIWARKSRKHK-HVFNYEVLKKINNDKQMRDVWSF 183

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R
Sbjct: 184 PAIAPWEKTNGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKR 238

Query: 247 SFIGIEMKQDYIDIATKR 264
            FIGIE + +++ I+  R
Sbjct: 239 QFIGIEKESEFVKISMDR 256


>gi|33337323|gb|AAQ13329.1| HpyIIIM protein [Helicobacter pylori]
          Length = 277

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/258 (40%), Positives = 145/258 (56%), Gaps = 11/258 (4%)

Query: 10  NENQNSIFEWKDKII---KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           NE    IF+ +D++    +G+   VL +      DLIFADPPY L  +G L      +V 
Sbjct: 7   NEIARPIFKSQDQLFTLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVS 64

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                WDK    +  D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F IL
Sbjct: 65  VNKGDWDKEDGIDDIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKIL 124

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  
Sbjct: 125 NLITWQKTNPPPNFSCRYLTHSAEQIIWARKSHKHK-HVFNYEVLKKINNDKQMRDVWSF 183

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E++  K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L++
Sbjct: 184 PAIAPWEKVNGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKK 238

Query: 247 SFIGIEMKQDYIDIATKR 264
            FIGIE + ++I I+  R
Sbjct: 239 QFIGIEKESEFIQISMNR 256


>gi|297379313|gb|ADI34200.1| Modification methylase [Helicobacter pylori v225d]
          Length = 277

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 105/258 (40%), Positives = 144/258 (55%), Gaps = 11/258 (4%)

Query: 10  NENQNSIFEWKDKII---KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           NE    IF+ +D++    +G+   VL +      DLIFADPPY L  +G L      +V 
Sbjct: 7   NEIARPIFKSQDQLFTLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVS 64

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                WDK  S    D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F IL
Sbjct: 65  VNKGDWDKEESVNDIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKIL 124

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  
Sbjct: 125 NLITWQKTNPPPNFSCRYLTHSAEQIIWARKSHKHK-HVFNYEVLKKINNDKQMRDVWSF 183

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R
Sbjct: 184 PAIAPWEKTNGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKR 238

Query: 247 SFIGIEMKQDYIDIATKR 264
            FIGIE + +++ I+  R
Sbjct: 239 QFIGIEKESEFVKISIDR 256


>gi|208434055|ref|YP_002265721.1| typeII adenine methyltransferase [Helicobacter pylori G27]
 gi|208431984|gb|ACI26855.1| typeII adenine methyltransferase [Helicobacter pylori G27]
          Length = 277

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/258 (40%), Positives = 145/258 (56%), Gaps = 11/258 (4%)

Query: 10  NENQNSIFEWKDKII---KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           NE    IF+  D++    +G+   VL +    + DLIFADPPY L  +G L      +V 
Sbjct: 7   NEIARPIFKSADELFTLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIVS 64

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                WDK +     D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F IL
Sbjct: 65  VNKGDWDKENGINDIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRLLQKLDFKIL 124

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  
Sbjct: 125 NLITWQKTNPPPNFSCRYLTHSAEQIIWARKSRKHK-HVFNYEVLKKINNDKQMRDVWSF 183

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E++  K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R
Sbjct: 184 PAIAPWEKVNGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKR 238

Query: 247 SFIGIEMKQDYIDIATKR 264
            FIGIE + ++I I+  R
Sbjct: 239 EFIGIEKESEFIKISMDR 256


>gi|308062955|gb|ADO04842.1| type II restriction enzyme M protein (hsdM) [Helicobacter pylori
           Sat464]
          Length = 276

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/258 (40%), Positives = 144/258 (55%), Gaps = 11/258 (4%)

Query: 10  NENQNSIFEWKDKII---KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           NE    IF+ +D++    +G+   VL +      DLIFADPPY L  +G L      +V 
Sbjct: 7   NEIARPIFKSQDQLFTLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVS 64

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                WDK  S    D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F IL
Sbjct: 65  VNKGDWDKEESVNDIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKIL 124

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  
Sbjct: 125 NLITWQKTNPPPNFSCRYLTHSAEQIIWARKSHKHK-HVFNYEILKKINNDKQMRDVWSF 183

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R
Sbjct: 184 PAIAPWEKANGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKR 238

Query: 247 SFIGIEMKQDYIDIATKR 264
            FIGIE + +++ I+  R
Sbjct: 239 EFIGIEKESEFVKISMDR 256


>gi|317179480|dbj|BAJ57268.1| Type II restriction enzyme M protein [Helicobacter pylori F30]
          Length = 276

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/258 (40%), Positives = 144/258 (55%), Gaps = 11/258 (4%)

Query: 10  NENQNSIFEWKDKII---KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           NE    IF+ +D++    +G+   VL +      DLIFADPPY L  +G L      +V 
Sbjct: 7   NEIARPIFKSQDQLFTLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVS 64

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                WDK  S    D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F IL
Sbjct: 65  VNKGDWDKEESVNDIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRVLQKLDFKIL 124

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  
Sbjct: 125 NLITWQKTNPPPNFSCRYLTHSAEQIIWARKSRKHK-HVFNYEVLKKINNDKQMRDVWSF 183

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R
Sbjct: 184 PAIAPWEKTNGK-----HPTQKPLALLVRLLLMASDGNSLIGDPFSGSSTTGIAANLLKR 238

Query: 247 SFIGIEMKQDYIDIATKR 264
            FIGIE + +++ I+  R
Sbjct: 239 QFIGIEKESEFVKISMDR 256


>gi|188526898|ref|YP_001909585.1| type II restriction enzyme M protein (hsdM) [Helicobacter pylori
           Shi470]
 gi|188143138|gb|ACD47555.1| type II restriction enzyme M protein (hsdM) [Helicobacter pylori
           Shi470]
          Length = 277

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/258 (40%), Positives = 143/258 (55%), Gaps = 11/258 (4%)

Query: 10  NENQNSIFEWKDKII---KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           NE    IF+ +D++    +G+   VL +      DLIFADPPY L  +G L      +V 
Sbjct: 7   NEIARPIFKSQDQLFTLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVS 64

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                WDK  S    D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F IL
Sbjct: 65  VNKGDWDKEESVNDIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKIL 124

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  
Sbjct: 125 NLITWQKTNPPPNFSCRYLTHSAEQIIWARKSHKHK-HVFNYEVLKKINNDKQMRDVWSF 183

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L R
Sbjct: 184 PAIAPWEKANGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLER 238

Query: 247 SFIGIEMKQDYIDIATKR 264
            FIGIE + +++ I+  R
Sbjct: 239 QFIGIEKESEFVKISMDR 256


>gi|298736964|ref|YP_003729494.1| putative adenine-specific DNA-methyltransferase [Helicobacter
           pylori B8]
 gi|298356158|emb|CBI67030.1| putative adenine-specific DNA-methyltransferase [Helicobacter
           pylori B8]
          Length = 304

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/252 (40%), Positives = 142/252 (56%), Gaps = 11/252 (4%)

Query: 16  IFEWKDKII---KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           IF+  D++    +G+   VL +    + DLIFADPPY L  +G L      +V      W
Sbjct: 40  IFKSTDELFTLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDW 97

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           DK       D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F ILN I W+
Sbjct: 98  DKEDGVNGIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRLLQKLDFKILNLITWQ 157

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  P  +  
Sbjct: 158 KTNPPPNFSCRYLTHSAEQIIWARKSHKHK-HVFNYEVLKKINNDKQMRDVWSFPAIAPW 216

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           E++  K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE
Sbjct: 217 EKVNGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKRQFIGIE 271

Query: 253 MKQDYIDIATKR 264
            + ++I I+  R
Sbjct: 272 KESEFIKISINR 283


>gi|217032871|ref|ZP_03438349.1| hypothetical protein HPB128_1g8 [Helicobacter pylori B128]
 gi|216945411|gb|EEC24077.1| hypothetical protein HPB128_1g8 [Helicobacter pylori B128]
          Length = 274

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 103/252 (40%), Positives = 142/252 (56%), Gaps = 11/252 (4%)

Query: 16  IFEWKDKII---KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           IF+  D++    +G+   VL +    + DLIFADPPY L  +G L      +V      W
Sbjct: 10  IFKSTDELFTLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDW 67

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           DK       D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F ILN I W+
Sbjct: 68  DKEDGVNGIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRLLQKLDFKILNLITWQ 127

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  P  +  
Sbjct: 128 KTNPPPNFSCRYLTHSAEQIIWARKSHKHK-HVFNYEVLKKINNDKQMRDVWSFPAIAPW 186

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           E++  K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE
Sbjct: 187 EKVNGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKRQFIGIE 241

Query: 253 MKQDYIDIATKR 264
            + ++I I+  R
Sbjct: 242 KESEFIKISINR 253


>gi|33337327|gb|AAQ13331.1| HpyIIIM protein [Helicobacter pylori]
          Length = 274

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 103/252 (40%), Positives = 143/252 (56%), Gaps = 11/252 (4%)

Query: 16  IFEWKDKII---KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           IF+ +D++    +G+   VL +      DLIFADPPY L  +G L      +V      W
Sbjct: 10  IFKSQDQLFTLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDW 67

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           DK  S    D F   W+   ++ LK  G+L + G+YHN+F +G +LQ L+F ILN I W+
Sbjct: 68  DKEESVNDIDEFNYQWINNAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKILNLITWQ 127

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  P  +  
Sbjct: 128 KTNPPPNFSCRYLTHSAEQIIWARKSHKHK-HVFNYEVLKKINNDKQMRDVWSFPAIAPW 186

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           E++  K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE
Sbjct: 187 EKVNGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKRQFIGIE 241

Query: 253 MKQDYIDIATKR 264
            + ++I I+  R
Sbjct: 242 KESEFIQISMDR 253


>gi|315586126|gb|ADU40507.1| site-specific DNA-methyltransferase (adenine-specific)
           [Helicobacter pylori 35A]
          Length = 276

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 105/258 (40%), Positives = 144/258 (55%), Gaps = 11/258 (4%)

Query: 10  NENQNSIFEWKDKII---KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           NE  + IF+ +D++    +G+   VL +      DLIFADPPY L  +G L      +V 
Sbjct: 7   NEIAHPIFKSQDQLFTLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVS 64

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                WDK  S    D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F IL
Sbjct: 65  VNKGDWDKEESVNDIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRVLQKLDFKIL 124

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QM   W  
Sbjct: 125 NLITWQKTNPPPNFSCRYLTHSAEQIIWARKSRKHK-HVFNYEVLKKINNDKQMHDVWSF 183

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R
Sbjct: 184 PAIAPWEKTNGK-----HPTQKPLALLVRLLLMASDGNSLIGDPFSGSSTTGIAANLLKR 238

Query: 247 SFIGIEMKQDYIDIATKR 264
            FIGIE + ++I I+  R
Sbjct: 239 QFIGIEKESEFIQISMNR 256


>gi|261838963|gb|ACX98728.1| typeII adenine methyltransferase [Helicobacter pylori 52]
          Length = 277

 Score =  166 bits (421), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 104/258 (40%), Positives = 144/258 (55%), Gaps = 11/258 (4%)

Query: 10  NENQNSIFEWKDKII---KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           NE    IF+ +D++    +G+   +L +      DLIFADPPY L  +G L      +V 
Sbjct: 7   NEIARPIFKSQDQLFTLYQGDCNEILPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVS 64

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                WDK  S    D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F IL
Sbjct: 65  VNKGDWDKEESVNDIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKIL 124

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  
Sbjct: 125 NLITWQKTNPPPNFSCRYLTHSAEQIIWARKSHKHK-HVFNYEILKKINNDKQMRDVWSF 183

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R
Sbjct: 184 PAIAPWEKANGK-----HPTQKPLALLVRLLLMASDGNSLIGDPFSGSSTTGIAANLLKR 238

Query: 247 SFIGIEMKQDYIDIATKR 264
            FIGIE + +++ I+  R
Sbjct: 239 QFIGIEKESEFVKISMDR 256


>gi|210134296|ref|YP_002300735.1| type II R-M system methyltransferase [Helicobacter pylori P12]
 gi|210132264|gb|ACJ07255.1| type II R-M system methyltransferase [Helicobacter pylori P12]
          Length = 282

 Score =  166 bits (419), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 104/258 (40%), Positives = 144/258 (55%), Gaps = 11/258 (4%)

Query: 10  NENQNSIFEWKDKII---KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           NE  + IF+  D++    +G+   VL +    + DLIFADPPY L  +G L      +V 
Sbjct: 7   NEIAHPIFKSTDELFTLYQGDCNEVLSQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIVS 64

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                WDK       D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F IL
Sbjct: 65  VNKGDWDKEDGINGIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKIL 124

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N + QMR  W  
Sbjct: 125 NLITWQKTNPPPNFSCRYLTHSAEQIIWARKSRKHK-HVFNYEILKKINNNKQMRDVWSF 183

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R
Sbjct: 184 PAIAPWEKANGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKR 238

Query: 247 SFIGIEMKQDYIDIATKR 264
            FIGIE + ++I I+  R
Sbjct: 239 EFIGIEKESEFIKISINR 256


>gi|237749758|ref|ZP_04580238.1| DNA methylase [Helicobacter bilis ATCC 43879]
 gi|229374623|gb|EEO25014.1| DNA methylase [Helicobacter bilis ATCC 43879]
          Length = 284

 Score =  166 bits (419), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 99/245 (40%), Positives = 141/245 (57%), Gaps = 8/245 (3%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K  + +G+  ++L ++  +S D+IFADPPY L  +G L      +V      WD+  + +
Sbjct: 18  KFSLYQGDCNALLPQM-KESFDVIFADPPYFLSNDG-LSIQSGKIVSVNKGEWDRGENID 75

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
             D F   W+   +  LKP G++ + G+YHNIF +G  LQ L+F ILN I W+K+NP PN
Sbjct: 76  EIDRFNMEWIANAKIALKPTGSIMISGTYHNIFSLGRALQKLDFKILNIITWQKTNPPPN 135

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           F  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  P  +  E+   K 
Sbjct: 136 FSCRYLTHSTEQIIWARKSHKYK-HIFNYEILKKLNNDKQMRDVWSFPAIAPWEKTFGK- 193

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
               HPTQKP ALL R+L+ ++    II DPF GS T+G  A  L R F+GIE +  +I+
Sbjct: 194 ----HPTQKPLALLVRLLLMASNDDSIICDPFSGSSTTGIAANLLGRQFVGIERESSFIN 249

Query: 260 IATKR 264
           ++ KR
Sbjct: 250 LSIKR 254


>gi|33337333|gb|AAQ13334.1| HpyIIIM protein [Helicobacter pylori]
          Length = 268

 Score =  166 bits (419), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 103/252 (40%), Positives = 143/252 (56%), Gaps = 11/252 (4%)

Query: 16  IFEWKDKII---KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           IF+ +D++    +G+   VL +    + DLIFADPPY L  +G L      +V      W
Sbjct: 10  IFKSQDQLFTLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDW 67

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           DK +     D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F ILN I W+
Sbjct: 68  DKENGINDIDEFNCQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKILNLITWQ 127

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  P  +  
Sbjct: 128 KTNPPPNFSCRYLTHSAEQIIWARKSRKHK-HVFNYEVLKKINNDKQMRDVWSFPAIAPW 186

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE
Sbjct: 187 EKANGK-----HPTQKPLALLVRLLLMASDGNSLIGDPFSGSSTTGIAANLLKRQFIGIE 241

Query: 253 MKQDYIDIATKR 264
            + ++I I+  R
Sbjct: 242 KESEFIKISMNR 253


>gi|317011937|gb|ADU82545.1| type II adenine methyltransferase [Helicobacter pylori Lithuania75]
          Length = 273

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/252 (40%), Positives = 142/252 (56%), Gaps = 11/252 (4%)

Query: 16  IFEWKDKII---KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           IF+ +D++    +G+   VL +    + DLIFADPPY L  +G L      +V      W
Sbjct: 10  IFKSQDQLFTLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDW 67

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           DK       D F   W+   ++ LK  G+L + G+YHN+F +G +LQ L+F ILN I W+
Sbjct: 68  DKEDGINGIDEFNYQWINNAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKILNLITWQ 127

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  P  +  
Sbjct: 128 KTNPPPNFSCRYLTHSAEQIIWARKSRKHK-HVFNYEVLKKINNDKQMRDVWSFPAIAPW 186

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           E++  K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE
Sbjct: 187 EKVNGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKREFIGIE 241

Query: 253 MKQDYIDIATKR 264
            +  +I I+  R
Sbjct: 242 KESGFIKISMDR 253


>gi|33337325|gb|AAQ13330.1| HpyIIIM protein [Helicobacter pylori]
          Length = 276

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 104/258 (40%), Positives = 143/258 (55%), Gaps = 11/258 (4%)

Query: 10  NENQNSIFEWKDKII---KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           NE    IF  +D++    +G+   VL +   +  DLIFADPPY L  +G L      +V 
Sbjct: 7   NEIARPIFTSQDQLFTLYQGDCNEVLPQFENQ-FDLIFADPPYFLSNDG-LSIQSGKIVS 64

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                WDK  S    D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F IL
Sbjct: 65  VNKGDWDKEESVNGIDEFNYQWISNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKIL 124

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W+K+N  PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  
Sbjct: 125 NLITWQKTNHPPNFSCRYLTHSAEQIIWARKSRKHK-HVFNYEVLKKINNDKQMRDVWSF 183

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R
Sbjct: 184 PAIAPWEKANGK-----HPTQKPLALLVRLLLMASGENSLIGDPFSGSSTTGIAANLLKR 238

Query: 247 SFIGIEMKQDYIDIATKR 264
            FIGIE + +++ I+  R
Sbjct: 239 QFIGIEKESEFVKISMDR 256


>gi|108562518|ref|YP_626834.1| type II adenine methyltransferase [Helicobacter pylori HPAG1]
 gi|107836291|gb|ABF84160.1| type II adenine methyltransferase [Helicobacter pylori HPAG1]
          Length = 273

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/252 (40%), Positives = 142/252 (56%), Gaps = 11/252 (4%)

Query: 16  IFEWKDKII---KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           IF+ +D++    +G+   VL +    + DLIFADPPY L  +G L      +V      W
Sbjct: 10  IFKSQDQLFTLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDW 67

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           DK +     D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F ILN I W+
Sbjct: 68  DKENGINDIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRLLQKLDFKILNLITWQ 127

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QM   W  P  +  
Sbjct: 128 KTNPPPNFSCRYLTHSAEQIIWARKSRKHK-HVFNYEVLKKINNDKQMHDVWSFPAIAPW 186

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           E++  K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L R FIGIE
Sbjct: 187 EKVNGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLNREFIGIE 241

Query: 253 MKQDYIDIATKR 264
            + ++I I+  R
Sbjct: 242 KESEFIKISMDR 253


>gi|317010373|gb|ADU84120.1| typeII adenine methyltransferase [Helicobacter pylori SouthAfrica7]
          Length = 284

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/257 (40%), Positives = 140/257 (54%), Gaps = 9/257 (3%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
           N+    IFE  D++         E LP    + DLIFADPPY L  +G L      +V  
Sbjct: 7   NQPPRPIFESIDELFTLYQEDCNEVLPLFENAFDLIFADPPYFLSNDG-LSIQSGKIVSV 65

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
               WDK       D F   W+   ++ LK  G+L + G+YHN+F +G +LQ L+F ILN
Sbjct: 66  NKGDWDKEEGVNGIDEFNHQWINNAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKILN 125

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
            I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  P
Sbjct: 126 LITWQKTNPPPNFSCRYLTHSAEQIIWARKSRKHK-HVFNYEILKKINNDKQMRDVWNFP 184

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
             +  E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R 
Sbjct: 185 AIAPWEKANGK-----HPTQKPLALLVRLLLMASDDNSLIGDPFSGSSTTGIAANLLKRK 239

Query: 248 FIGIEMKQDYIDIATKR 264
           FIGIE + +++ I+  R
Sbjct: 240 FIGIEKESEFVKISMNR 256


>gi|308183890|ref|YP_003928023.1| M.HpyAIII, type II adenine methyltransferase [Helicobacter pylori
           SJM180]
 gi|308059810|gb|ADO01706.1| M.HpyAIII, type II adenine methyltransferase [Helicobacter pylori
           SJM180]
          Length = 273

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/252 (40%), Positives = 142/252 (56%), Gaps = 11/252 (4%)

Query: 16  IFEWKDKII---KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           IF+ +D++    +G+   VL +    + DLIFADPPY L  +G L      +V      W
Sbjct: 10  IFKSQDQLFTLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDW 67

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           DK +     D F   W+   ++ LK  G+L + G+YHN+F +G +LQ L+F ILN I W+
Sbjct: 68  DKENGINDIDEFNHQWINNAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKILNLITWQ 127

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  P  +  
Sbjct: 128 KTNPPPNFSCRYLTHSAEQIIWARKSFKHK-HVFNYEVLKKINNDKQMRDVWSFPAIAPW 186

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE
Sbjct: 187 EKANGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKREFIGIE 241

Query: 253 MKQDYIDIATKR 264
            +  +I I+  R
Sbjct: 242 KESGFIKISMNR 253


>gi|217034170|ref|ZP_03439589.1| hypothetical protein HP9810_886g7 [Helicobacter pylori 98-10]
 gi|216943338|gb|EEC22797.1| hypothetical protein HP9810_886g7 [Helicobacter pylori 98-10]
          Length = 276

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 103/257 (40%), Positives = 141/257 (54%), Gaps = 9/257 (3%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
           NE    IF+ +D++         E LP      DLIFADPPY L  +G L      +V  
Sbjct: 7   NEIARPIFKSQDQLFTLYQGDCNEILPQFENQFDLIFADPPYFLSNDG-LSIQSGKIVSV 65

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
               WDK  S    D F   W+   ++ LK  G+L + G+YHN+F +G +LQ L+F ILN
Sbjct: 66  NKGDWDKEESVNDIDEFNYQWINNAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKILN 125

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
            I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N + QMR  W  P
Sbjct: 126 LITWQKTNPPPNFSCRYLTHSAEQIIWARKSRKHK-HVFNYEILKKINNNKQMRDVWSFP 184

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
             +  E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R 
Sbjct: 185 AIAPWEKANGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKRQ 239

Query: 248 FIGIEMKQDYIDIATKR 264
           FIGIE + +++ I+  R
Sbjct: 240 FIGIEKESEFVKISMDR 256


>gi|33337331|gb|AAQ13333.1| HpyIIIM protein [Helicobacter pylori]
          Length = 274

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 101/252 (40%), Positives = 143/252 (56%), Gaps = 11/252 (4%)

Query: 16  IFEWKDKII---KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           IF+ +D++    +G+   VL +      DLIFADPPY L  +G L   +  +V      W
Sbjct: 10  IFKSQDQLFTLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQNGKIVSVNKGDW 67

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           DK  S    D F   W+   ++ LK  G+L + G+YHN+F +G +LQ L+F ILN I W+
Sbjct: 68  DKEESVNDIDEFNYQWINNAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKILNLITWQ 127

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  P  +  
Sbjct: 128 KTNPPPNFSCRYLTHSAEQIIWARKSHKHK-HVFNYEVLKKINNDKQMRDVWSFPAIAPW 186

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           E++  K      PTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE
Sbjct: 187 EKVNGK-----RPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKRQFIGIE 241

Query: 253 MKQDYIDIATKR 264
            + +++ I+  R
Sbjct: 242 KESEFVKISMDR 253


>gi|15611155|ref|NP_222806.1| type II DNA modification (methyltransferase [Helicobacter pylori
           J99]
 gi|4154584|gb|AAD05658.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
           pylori J99]
          Length = 277

 Score =  163 bits (413), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 104/258 (40%), Positives = 144/258 (55%), Gaps = 11/258 (4%)

Query: 10  NENQNSIFEWKDKII---KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           NE  + IF+  DK+    +G+   VL +    + DLIFADPPY L  +G L      +V 
Sbjct: 7   NEIAHPIFKSADKLFTLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIVS 64

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                WDK +     D F   W+   ++ LK  G+L + G+YHN+F +G +LQ L+F IL
Sbjct: 65  VNKGDWDKENGINDIDEFNYQWINNAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKIL 124

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N + QMR  W  
Sbjct: 125 NLITWQKTNPPPNFSCRYLTHSAEQIIWARKSYKHK-HVFNYEILKKINNNKQMRDVWNF 183

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R
Sbjct: 184 PAIAPWEKANGK-----HPTQKPLALLVRLLLMASDDNSLIGDPFSGSSTTGIAANLLKR 238

Query: 247 SFIGIEMKQDYIDIATKR 264
            FIGIE +  +I I+  R
Sbjct: 239 EFIGIEKESRFIKISMNR 256


>gi|308182268|ref|YP_003926395.1| type II adenine methyltransferase [Helicobacter pylori PeCan4]
 gi|308064453|gb|ADO06345.1| type II adenine methyltransferase [Helicobacter pylori PeCan4]
          Length = 273

 Score =  163 bits (412), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 102/252 (40%), Positives = 141/252 (55%), Gaps = 11/252 (4%)

Query: 16  IFEWKDKII---KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           IF+  D++    +G+   VL +    + DLIFADPPY L  +G L      +V      W
Sbjct: 10  IFKSADELFTLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDW 67

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           DK +     D F   W+   ++ LK  G+L + G+YHN+F +G +LQ L+F ILN I W+
Sbjct: 68  DKENGINDIDEFNYQWINNAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKILNLITWQ 127

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  P  +  
Sbjct: 128 KTNPPPNFSCRYLTHSAEQIIWARKSRKHK-HVFNYEVLKKINNDKQMRDVWSFPAIAPW 186

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE
Sbjct: 187 EKTNGK-----HPTQKPLALLVRLLLMASDDNSLIGDPFSGSSTTGIAANLLKREFIGIE 241

Query: 253 MKQDYIDIATKR 264
            +  +I I+  R
Sbjct: 242 KESGFIKISMNR 253


>gi|33337329|gb|AAQ13332.1| HpyIIIM protein [Helicobacter pylori]
          Length = 274

 Score =  163 bits (412), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 102/252 (40%), Positives = 141/252 (55%), Gaps = 11/252 (4%)

Query: 16  IFEWKDKII---KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           IF+ +D++    +G+   VL +      DLIFADPPY L  +G L      +V      W
Sbjct: 10  IFKSQDQLFTLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDW 67

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           DK  S    D F   W+   ++ LK  G+L +  +YHNIF +G +LQ L+F ILN I W+
Sbjct: 68  DKEESVNDIDEFNYQWINNAKKALKNTGSLLISRTYHNIFSLGRVLQKLDFKILNLITWQ 127

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  P  +  
Sbjct: 128 KTNPPPNFSCRYLTHSAEQIIWARKSRKHK-HVFNYEVLKKINNDKQMRDVWSFPAIAPW 186

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE
Sbjct: 187 EKANGK-----HPTQKPLALLVRLLLMASGENSLIGDPFSGSSTTGIAANLLKRQFIGIE 241

Query: 253 MKQDYIDIATKR 264
            + +++ I+  R
Sbjct: 242 KESEFVKISMDR 253


>gi|332672934|gb|AEE69751.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori 83]
          Length = 273

 Score =  162 bits (411), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 101/252 (40%), Positives = 142/252 (56%), Gaps = 11/252 (4%)

Query: 16  IFEWKDKII---KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           IF+  D++    +G+   VL +    + DLIFADPPY L  +G L      +V      W
Sbjct: 10  IFKSTDRLFTLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LNIQSGKIVSVNKGDW 67

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           DK    +  D F   W+   ++ LK  G+L + G+YHNIF +  +LQ L+F ILN I W+
Sbjct: 68  DKEYGIDDIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLRRLLQKLDFKILNLITWQ 127

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  P  +  
Sbjct: 128 KTNPPPNFSCRYLTHSAEQIIWARKSHKHK-HVFNYEVLKKINNDKQMRDVWSFPAIAPW 186

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           E++  K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE
Sbjct: 187 EKVNGK-----HPTQKPLALLVRLLLMASGENSLIGDPFSGSSTTGIAANLLKRQFIGIE 241

Query: 253 MKQDYIDIATKR 264
            + +++ I+  R
Sbjct: 242 KESEFVKISMDR 253


>gi|315639073|ref|ZP_07894241.1| modification methylase BabI [Campylobacter upsaliensis JV21]
 gi|315480849|gb|EFU71485.1| modification methylase BabI [Campylobacter upsaliensis JV21]
          Length = 221

 Score =  162 bits (410), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 86/208 (41%), Positives = 126/208 (60%), Gaps = 1/208 (0%)

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
           S K   +TFNY  +K  N + Q +S W I IC G+ERL++K+G+K H TQKPEALL +++
Sbjct: 5   SIKNAKFTFNYKTMKFLNHNKQEKSIWNIGICIGNERLKDKNGKKAHSTQKPEALLEKVI 64

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
           +SSTK G ++LDPFFG+GT+GAVAK+L R FIGIE  ++Y+ IA  RI  V    N ELT
Sbjct: 65  LSSTKNGALVLDPFFGTGTTGAVAKRLGRHFIGIEQDENYVKIAKARIEQVCVEDN-ELT 123

Query: 278 VLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAK 337
               +   P+V+   L+  G ++  +   +   N    +  +  +    E+ SIH++ AK
Sbjct: 124 RNELEIKPPKVSLEKLLNAGFLKENERFYDKNQNFICYLVHNNKVSDNKEILSIHKMAAK 183

Query: 338 VSGSETCNGWNFWYFEKLGELHSINTLR 365
                  NGW+++Y  K  +L SI+ LR
Sbjct: 184 YLNKANHNGWSYFYILKDEKLISIDALR 211


>gi|33337335|gb|AAQ13335.1| HpyIIIM protein [Helicobacter pylori]
          Length = 273

 Score =  162 bits (410), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 102/252 (40%), Positives = 141/252 (55%), Gaps = 11/252 (4%)

Query: 16  IFEWKDKII---KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           IF+ +D++    +G+   VL +   +  DLIFADPPY L  +G L      +V      W
Sbjct: 10  IFKSQDQLFTLYQGDCNEVLPQFENR-FDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDW 67

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           DK       D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F ILN I W+
Sbjct: 68  DKEEGVNGIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRLLQKLDFKILNLITWQ 127

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  P  +  
Sbjct: 128 KTNPPPNFSCRYLTHSAEQIIWARKSYKHK-HVFNYEVLKKINNDKQMRDVWSFPAIAPW 186

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           E++  K     HPTQKP ALL R+L+ ++    +I DPF  S T+G  A  L+R FIGIE
Sbjct: 187 EKVNGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSWSSTTGIAANLLKREFIGIE 241

Query: 253 MKQDYIDIATKR 264
            +  +I I+  R
Sbjct: 242 KESGFIKISMDR 253


>gi|317013518|gb|ADU80954.1| M.HpyAIII, type II adenine methyltransferase [Helicobacter pylori
           Gambia94/24]
          Length = 274

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 102/252 (40%), Positives = 141/252 (55%), Gaps = 11/252 (4%)

Query: 16  IFEWKDKII---KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           IF+  D++    +G+   VL +    + DLIFADPPY L  +G L      +V      W
Sbjct: 10  IFKSTDRLFTLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDW 67

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           DK +     D F   W+   ++ LK  G+L + G+YHN+F +G +LQ L+F ILN I W+
Sbjct: 68  DKENGINDIDEFNYQWINNAKKALKNTGSLLISGTYHNLFSLGRVLQKLDFKILNLITWQ 127

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  P  +  
Sbjct: 128 KTNPPPNFSCRYLTHSAEQIIWARKSRKHK-HVFNYEILKKINNDKQMRDVWNFPAIAPW 186

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE
Sbjct: 187 EKANGK-----HPTQKPLALLVRLLLMASDDNSLIGDPFSGSSTTGIAANLLKREFIGIE 241

Query: 253 MKQDYIDIATKR 264
            +  +I I+  R
Sbjct: 242 KESGFIKISMNR 253


>gi|307636783|gb|ADN79233.1| type II DNA modification enzyme /methyl transferase [Helicobacter
           pylori 908]
 gi|325996968|gb|ADZ49176.1| Type II adenine methyltransferase [Helicobacter pylori 2017]
          Length = 281

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/252 (40%), Positives = 141/252 (55%), Gaps = 11/252 (4%)

Query: 16  IFEWKDKII---KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           IF+  D++    +G+   VL +    + DLIFADPPY L  +G L      ++      W
Sbjct: 10  IFKSTDRLFTLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIMSVNKGDW 67

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           DK +     D F   W+   ++ LK  G+L + G+YHN+F +G +LQ L+F ILN I W+
Sbjct: 68  DKENGINDIDEFNYQWINNAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKILNLITWQ 127

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  P  +  
Sbjct: 128 KTNPPPNFSCRYLTHSAEQIIWARKSRKHK-HVFNYEILKKINNDKQMRDVWSFPAIAPW 186

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE
Sbjct: 187 EKANGK-----HPTQKPLALLVRLLLMASDDNSLIGDPFSGSSTTGIAANLLKREFIGIE 241

Query: 253 MKQDYIDIATKR 264
            +  +I I+  R
Sbjct: 242 KESGFIKISMNR 253


>gi|325995371|gb|ADZ50776.1| Type II DNA modification enzyme/methyl transferase [Helicobacter
           pylori 2018]
          Length = 281

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/252 (40%), Positives = 141/252 (55%), Gaps = 11/252 (4%)

Query: 16  IFEWKDKII---KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           IF+  D++    +G+   VL +    + DLIFADPPY L  +G L      ++      W
Sbjct: 10  IFKSTDRLFTLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIMSVNKGDW 67

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           DK +     D F   W+   ++ LK  G+L + G+YHN+F +G +LQ L+F ILN I W+
Sbjct: 68  DKENGINDIDEFNYQWINNAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKILNLITWQ 127

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  P  +  
Sbjct: 128 KTNPPPNFTCRYLTHSAEQIIWARKSRKHK-HVFNYEILKKINNDKQMRDVWSFPAIAPW 186

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE
Sbjct: 187 EKANGK-----HPTQKPLALLVRLLLMASDDNSLIGDPFSGSSTTGIAANLLKREFIGIE 241

Query: 253 MKQDYIDIATKR 264
            +  +I I+  R
Sbjct: 242 KESGFIKISMNR 253


>gi|57242503|ref|ZP_00370441.1| adenine specific DNA methyltransferase (HINFIM) [Campylobacter
           upsaliensis RM3195]
 gi|57016788|gb|EAL53571.1| adenine specific DNA methyltransferase (HINFIM) [Campylobacter
           upsaliensis RM3195]
          Length = 221

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 85/208 (40%), Positives = 125/208 (60%), Gaps = 1/208 (0%)

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
           S K   +TFNY  +K  N + Q +S W I IC G+ERL++K+G+K H TQKPEALL +++
Sbjct: 5   SIKNTKFTFNYKTMKFLNHNKQEKSIWNIGICIGNERLKDKNGKKAHSTQKPEALLEKVI 64

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
           +SSTK   ++LDPFFG+GT+GAVAK+L R FIGIE  ++Y+ IA  RI  V    N ELT
Sbjct: 65  LSSTKKDALVLDPFFGTGTTGAVAKRLGRHFIGIEQDENYVKIAKARIKQVCVEDN-ELT 123

Query: 278 VLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAK 337
               +   P+V+   L+  G ++  +   +   N    +  +  +    E+ SIH++ AK
Sbjct: 124 RNELEIKPPKVSLEKLLNAGFLKENERFYDKNQNFICYLVHNNKVSDNKEILSIHKMAAK 183

Query: 338 VSGSETCNGWNFWYFEKLGELHSINTLR 365
                  NGW+++Y  K  +L SI+ LR
Sbjct: 184 YLNKANYNGWSYFYILKDEKLISIDALR 211


>gi|312869218|ref|ZP_07729390.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus oris PB013-T2-3]
 gi|311095239|gb|EFQ53511.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus oris PB013-T2-3]
          Length = 256

 Score =  159 bits (401), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 88/248 (35%), Positives = 134/248 (54%), Gaps = 11/248 (4%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           + + ++ + ++++P  +VD+I ADPPY L  +G         V      WDK  S +  +
Sbjct: 11  LYQDDAFNFMKRIPNNAVDVIVADPPYFLSNDG-FSNSGGKFVSVNKGKWDKLPS-KDIE 68

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F    L   +R+L  NGT W+ GS HNI+ IG +L   +F ILN+I W+KSNP PN   
Sbjct: 69  KFYAEMLSQFQRILNKNGTAWIFGSMHNIYVIGYLLNRYDFKILNNITWQKSNPAPNLSR 128

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE-RLRNKDGE 201
           R F ++ ET++W     K     FNYD ++  N + QM+  W     + SE R  N    
Sbjct: 129 RMFTHSTETILWI--KKKDGKQFFNYDLMRKLNGNKQMKDVWTTATINKSEKRFGN---- 182

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP +++ RI+ +ST  G I+LDPF G+GT+    K      +G++    Y++IA
Sbjct: 183 --HPTQKPLSIIMRIIKASTTDGMIVLDPFIGAGTTAVAGKLCGVKVVGVDNSAGYLNIA 240

Query: 262 TKRIASVQ 269
            +R+   Q
Sbjct: 241 VQRLKDYQ 248


>gi|46206074|ref|ZP_00047737.2| COG0863: DNA modification methylase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 181

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 83/126 (65%), Positives = 98/126 (77%), Gaps = 1/126 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL-NGQLYRPDHSLVDAVTDSWDKFSSFE 79
           D+I+ G+ I+ +E+LPA SVD +FADPPYNLQL    L RPD S+VDAV D WDKFSSF 
Sbjct: 45  DEILVGDCIAAMERLPASSVDCVFADPPYNLQLGEAGLTRPDQSVVDAVDDDWDKFSSFS 104

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FTRAWL A RRV+KPN TLWVIGSYHNIFR+G+ LQ+L +WILNDIVWR+  P   
Sbjct: 105 AYDEFTRAWLTAARRVMKPNATLWVIGSYHNIFRVGSALQDLGYWILNDIVWRQGQPDAE 164

Query: 140 FRGRRF 145
              +RF
Sbjct: 165 LPRQRF 170


>gi|62181894|ref|YP_218311.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62129527|gb|AAX67230.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|322716384|gb|EFZ07955.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 296

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/289 (33%), Positives = 149/289 (51%), Gaps = 53/289 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G++++ L+KLP++S+DLIFADPPYN+  +           D + +SWD+ S     
Sbjct: 18  KIIHGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDEASFL--- 64

Query: 82  DAFTRAWLLAC----RRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
                AWL  C     RVLK +GT++++ S  N+  I    + L F I + IVW   +  
Sbjct: 65  -----AWLYECIDECHRVLKKHGTMYIMNSTENMPYIDLKCRTL-FTIKSRIVWSYDSSG 118

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL------KAANEDVQMRSD-------- 183
              + + F + +E ++    +PK+  YTFN DA+       A    +  R +        
Sbjct: 119 VQAK-KYFGSMYEPILMMVKNPKS--YTFNRDAILVETTTGAKRALIDYRKNPPQPYNQK 175

Query: 184 ------WLIPICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
                 W  P      R+R   D  + HPTQKP ALL RI+++S+ P D +LDPF GS T
Sbjct: 176 KVPGNVWSFP------RVRYLMDEYENHPTQKPSALLKRIILASSNPSDTVLDPFAGSFT 229

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           +GAVA +  R FIGIE+  +Y+ +  +R++        EL  +  ++T+
Sbjct: 230 TGAVAAESGRKFIGIELNNEYVKMGLRRLSVTSHYSENELAKVKKRKTQ 278


>gi|224585184|ref|YP_002638983.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224469712|gb|ACN47542.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 294

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/289 (33%), Positives = 149/289 (51%), Gaps = 53/289 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G++++ L+KLP++S+DLIFADPPYN+  +           D + +SWD+ S     
Sbjct: 16  KIIHGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDEASFL--- 62

Query: 82  DAFTRAWLLAC----RRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
                AWL  C     RVLK +GT++++ S  N+  I    + L F I + IVW   +  
Sbjct: 63  -----AWLYECIDECHRVLKKHGTMYIMNSTENMPYIDLKCRTL-FTIKSRIVWSYDSSG 116

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL------KAANEDVQMRSD-------- 183
              + + F + +E ++    +PK+  YTFN DA+       A    +  R +        
Sbjct: 117 VQAK-KYFGSMYEPILMMVKNPKS--YTFNRDAILVETTTGAKRALIDYRKNPPQPYNQK 173

Query: 184 ------WLIPICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
                 W  P      R+R   D  + HPTQKP ALL RI+++S+ P D +LDPF GS T
Sbjct: 174 KVPGNVWSFP------RVRYLMDEYENHPTQKPSALLKRIILASSNPSDTVLDPFAGSFT 227

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           +GAVA +  R FIGIE+  +Y+ +  +R++        EL  +  ++T+
Sbjct: 228 TGAVAAESGRKFIGIELNNEYVKMGLRRLSVTSHYSENELAKVKKRKTQ 276


>gi|168262589|ref|ZP_02684562.1| DNA methylase [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|205348404|gb|EDZ35035.1| DNA methylase [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
          Length = 294

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/289 (33%), Positives = 148/289 (51%), Gaps = 53/289 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G++++ L+KLP++S+DLIFADPPYN+  +           D + +SWD+ S     
Sbjct: 16  KIIHGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDETSFL--- 62

Query: 82  DAFTRAWLL----ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
                AWL      C RVLK +GT++++ S  N+  I    + L F I + IVW   +  
Sbjct: 63  -----AWLYECIDECHRVLKKHGTMYIMNSTENMPYIDLKCRTL-FTIKSRIVWSYDSSG 116

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL------KAANEDVQMRSD-------- 183
              + + F + +E ++    +PK+  YTFN DA+       A    +  R +        
Sbjct: 117 VQAK-KYFGSMYEPILMMVKNPKS--YTFNRDAILVETTTGAKRALIDYRKNPPQPYNQK 173

Query: 184 ------WLIPICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
                 W  P      R+R   D  + HPTQKP ALL RI+++S+ P D +LDPF GS T
Sbjct: 174 KVPGNVWSFP------RVRYLMDEYENHPTQKPSALLKRIILASSNPSDTVLDPFAGSFT 227

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           +GAVA    R FIGIE+  +Y+ +  +R++        EL  +  ++T+
Sbjct: 228 TGAVAAASGRKFIGIELNNEYVKMGLRRLSVTSHYSENELAKVKKRKTQ 276


>gi|16762145|ref|NP_457762.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|16766681|ref|NP_462296.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29143634|ref|NP_806976.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|161616411|ref|YP_001590376.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167552904|ref|ZP_02346655.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|167993974|ref|ZP_02575067.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168233973|ref|ZP_02659031.1| DNA methylase [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|168239415|ref|ZP_02664473.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168245210|ref|ZP_02670142.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168463376|ref|ZP_02697293.1| DNA methylase [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|168822713|ref|ZP_02834713.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194442303|ref|YP_002042642.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194449918|ref|YP_002047414.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194469895|ref|ZP_03075879.1| DNA methylase [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194736425|ref|YP_002116334.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197251530|ref|YP_002148310.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197265136|ref|ZP_03165210.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|198244548|ref|YP_002217356.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200389115|ref|ZP_03215727.1| DNA methylase [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|204931162|ref|ZP_03221956.1| DNA methylase [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|207858634|ref|YP_002245285.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|213162245|ref|ZP_03347955.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213428297|ref|ZP_03361047.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213649888|ref|ZP_03379941.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213853025|ref|ZP_03382557.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|289824094|ref|ZP_06543691.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25286118|pir||AG0913 probable adenine-specific DNA-modification methylase STY3566
           [imported] - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 gi|16421947|gb|AAL22255.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16504448|emb|CAD07901.1| putative adenine-specific DNA-modification methylase [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29139269|gb|AAO70836.1| putative adenine-specific DNA-modification methylase [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|161365775|gb|ABX69543.1| hypothetical protein SPAB_04220 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194400966|gb|ACF61188.1| DNA methylase [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194408222|gb|ACF68441.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194456259|gb|EDX45098.1| DNA methylase [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194711927|gb|ACF91148.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195633408|gb|EDX51822.1| DNA methylase [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197215233|gb|ACH52630.1| DNA methylase [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197243391|gb|EDY26011.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197287877|gb|EDY27265.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197939064|gb|ACH76397.1| DNA methylase [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|199606213|gb|EDZ04758.1| DNA methylase [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|204319929|gb|EDZ05135.1| DNA methylase [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205322540|gb|EDZ10379.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205328111|gb|EDZ14875.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205332006|gb|EDZ18770.1| DNA methylase [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|205336037|gb|EDZ22801.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205340921|gb|EDZ27685.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|206710437|emb|CAR34795.1| putative adenine-specific DNA-modification methylase [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|261248549|emb|CBG26387.1| putative adenine-specific DNA-modification methylase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267995595|gb|ACY90480.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159935|emb|CBW19454.1| putative adenine-specific DNA-modification methylase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312914414|dbj|BAJ38388.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320087834|emb|CBY97598.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321225192|gb|EFX50251.1| Adenine-specific methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322614527|gb|EFY11457.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618251|gb|EFY15142.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625964|gb|EFY22778.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322626734|gb|EFY23531.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631302|gb|EFY28062.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635431|gb|EFY32145.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322643431|gb|EFY39995.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322647265|gb|EFY43763.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649729|gb|EFY46156.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322655597|gb|EFY51903.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322658373|gb|EFY54638.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322664403|gb|EFY60599.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322667377|gb|EFY63539.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674625|gb|EFY70717.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322675744|gb|EFY71817.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682380|gb|EFY78403.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322684755|gb|EFY80756.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323131748|gb|ADX19178.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323196167|gb|EFZ81327.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323196733|gb|EFZ81878.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204370|gb|EFZ89379.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323207718|gb|EFZ92665.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323209992|gb|EFZ94897.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323214293|gb|EFZ99046.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323219030|gb|EGA03536.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323225048|gb|EGA09301.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230400|gb|EGA14519.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233376|gb|EGA17470.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239413|gb|EGA23463.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323242336|gb|EGA26362.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323247310|gb|EGA31275.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250400|gb|EGA34284.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256848|gb|EGA40563.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323263868|gb|EGA47387.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323264111|gb|EGA47619.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323271630|gb|EGA55049.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326625135|gb|EGE31480.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|332990244|gb|AEF09227.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 294

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/289 (33%), Positives = 148/289 (51%), Gaps = 53/289 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G++++ L+KLP++S+DLIFADPPYN+  +           D + +SWD+ S     
Sbjct: 16  KIIHGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDEASFL--- 62

Query: 82  DAFTRAWLL----ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
                AWL      C RVLK +GT++++ S  N+  I    + L F I + IVW   +  
Sbjct: 63  -----AWLYECIDECHRVLKKHGTMYIMNSTENMPYIDLKCRTL-FTIKSRIVWSYDSSG 116

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL------KAANEDVQMRSD-------- 183
              + + F + +E ++    +PK+  YTFN DA+       A    +  R +        
Sbjct: 117 VQAK-KYFGSMYEPILMMVKNPKS--YTFNRDAILVETTTGAKRALIDYRKNPPQPYNQK 173

Query: 184 ------WLIPICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
                 W  P      R+R   D  + HPTQKP ALL RI+++S+ P D +LDPF GS T
Sbjct: 174 KVPGNVWSFP------RVRYLMDEYENHPTQKPSALLKRIILASSNPSDTVLDPFAGSFT 227

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           +GAVA    R FIGIE+  +Y+ +  +R++        EL  +  ++T+
Sbjct: 228 TGAVAAASGRKFIGIELNNEYVKMGLRRLSVTSHYSENELAKVKKRKTQ 276


>gi|227431774|ref|ZP_03913801.1| adenine-specific methyltransferase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|227352457|gb|EEJ42656.1| adenine-specific methyltransferase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 231

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/250 (32%), Positives = 124/250 (49%), Gaps = 22/250 (8%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+I GN++  L  +P  S+DLI  DPPYN+         + + +D     WDK       
Sbjct: 2   KLINGNNLDALSDIPDNSIDLILTDPPYNISRKNNFESLNRAGIDF--GDWDK------- 52

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           +A    W+    R++K   ++ +  ++ N+  I   L+   F + + I W K+NPMP  R
Sbjct: 53  NADLLTWIDKVPRIVKKGASIIIFNAWRNLGDIAERLEKNGFVVKDIIRWEKTNPMPRNR 112

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            RR+   +E  IWA    K   + FN  + K        RS+  +PI   +E++      
Sbjct: 113 DRRYIVDYEFAIWAVE--KHNKWIFNRQSNKYD------RSEIRVPITGKAEKILGS--- 161

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP  L+  +L+  +   DI+LDPF GSG++G   + L R FIGIE+ + Y  IA
Sbjct: 162 --HPTQKPIKLMEELLLRHSNENDIVLDPFMGSGSTGVACRNLNREFIGIELDETYFKIA 219

Query: 262 TKRIASVQPL 271
             RI   Q L
Sbjct: 220 ENRIREAQTL 229


>gi|238913534|ref|ZP_04657371.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 287

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/287 (33%), Positives = 146/287 (50%), Gaps = 53/287 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G++++ L+KLP++S+DLIFADPPYN+  +           D + +SWD+ S     
Sbjct: 16  KIIHGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDEASFL--- 62

Query: 82  DAFTRAWLL----ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
                AWL      C RVLK +GT++++ S  N+  I    + L F I + IVW   +  
Sbjct: 63  -----AWLYECIDECHRVLKKHGTMYIMNSTENMPYIDLKCRTL-FTIKSRIVWSYDSSG 116

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL------KAANEDVQMRSD-------- 183
              + + F + +E ++    +PK+  YTFN DA+       A    +  R +        
Sbjct: 117 VQAK-KYFGSMYEPILMMVKNPKS--YTFNRDAILVETTTGAKRALIDYRKNPPQPYNQK 173

Query: 184 ------WLIPICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
                 W  P      R+R   D  + HPTQKP ALL RI+++S+ P D +LDPF GS T
Sbjct: 174 KVPGNVWSFP------RVRYLMDEYENHPTQKPSALLKRIILASSNPSDTVLDPFAGSFT 227

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
           +GAVA    R FIGIE+  +Y+ +  +R++        EL  +  ++
Sbjct: 228 TGAVAAASGRKFIGIELNNEYVKMGLRRLSVTSHYSENELAKVKKRK 274


>gi|324115134|gb|EGC09098.1| DNA methylase [Escherichia fergusonii B253]
          Length = 292

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/282 (34%), Positives = 146/282 (51%), Gaps = 41/282 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +II G+++S L+KLP++SVDLIFADPPYN+  N           D + +SWD        
Sbjct: 16  RIIHGDALSELKKLPSESVDLIFADPPYNIGKN----------FDGLVESWD-------- 57

Query: 82  DAFTRAWLL----ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           DA  R+WL      C RVLK  G+++++ S  N+  I    + L F I + I+W   +  
Sbjct: 58  DADFRSWLFEIIAECHRVLKKQGSMYIMNSTENMPWIDLECRKL-FTIKSRIIWAYDSSG 116

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL------KAANEDVQMRSDWLIPICSG 191
              + + F + +E ++       AK YTFN DA+       A    +  R +   P  S 
Sbjct: 117 VQAK-KYFGSMYEPILMMVKD--AKNYTFNSDAILVEAKTGAKRALIDYRKNPPQPYNSQ 173

Query: 192 S--------ERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
                     R+R   D  + HPTQKP ALL RI+++S+ PGDI+LDPF GS T+G VA 
Sbjct: 174 KVPGNVWEFSRVRYLMDEYENHPTQKPVALLKRIILASSCPGDIVLDPFAGSFTTGEVAV 233

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
           +  R FIGIE+  +Y+ +  +R+         EL  +  ++T
Sbjct: 234 ETGRRFIGIEVNCEYVKMGLRRLNVDSHFSAEELAKVKKRKT 275


>gi|167631056|ref|YP_001681555.1| DNA methylase [Heliobacterium modesticaldum Ice1]
 gi|167593796|gb|ABZ85544.1| DNA methylase [Heliobacterium modesticaldum Ice1]
          Length = 304

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/282 (32%), Positives = 141/282 (50%), Gaps = 54/282 (19%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+I  G+++  + +LPA+SVDLIFADPPY   L         S         + + + E 
Sbjct: 45  DRIYCGDALVGMSRLPARSVDLIFADPPY-FGLKKDFGSGKRS---------NPWKTIEE 94

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +TRAW     R+LKP+G ++V   +    R+  ML + +F +LN I WR+       
Sbjct: 95  YMEWTRAWFAEAARLLKPHGAIYVCCDWEYSGRVQEMLSD-SFDVLNRITWRREKG---- 149

Query: 141 RG--RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER---- 194
           RG  + ++N  E + +A     ++ Y FN        EDV+ R + + P  +   +    
Sbjct: 150 RGAAKNWKNNMEDIWFAVVD--SRQYIFNL-------EDVKFRKEIIAPYTTTDGKPKDW 200

Query: 195 LRNKDGEKL------------------------HPTQKPEALLSRILVSSTKPGDIILDP 230
           +  + GE+                         HPTQKPE L+ R +++S+ PG ++LDP
Sbjct: 201 VETETGERFRMTCPPNIWTDLTVPFWSMPENTPHPTQKPEKLVERCILASSNPGALVLDP 260

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
           F GSGT+ AVA++L R FIG E  +DY+ +A KR+  V   G
Sbjct: 261 FMGSGTTAAVARRLGRHFIGFETNEDYVRLAMKRLDRVSLCG 302


>gi|152981599|ref|YP_001354977.1| DNA modification methylase [Janthinobacterium sp. Marseille]
 gi|151281676|gb|ABR90086.1| DNA modification methylase [Janthinobacterium sp. Marseille]
          Length = 273

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 149/288 (51%), Gaps = 33/288 (11%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W+D+I   ++++ L ++P  ++DLI ADPPY L   G+ Y  D   +DA           
Sbjct: 4   WRDRIFCEDALAGLARIPDAAIDLIIADPPYGL---GKDYGNDSDKLDA----------- 49

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AY ++   W+ A    LKPNG+L++  ++     +  ML+     +LN+IVW +  P  
Sbjct: 50  DAYLSWMEQWIDAALPKLKPNGSLYIFLTWRYSPEVFVMLKK-RMTMLNEIVWDRRVPSM 108

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL---------KAANEDVQMRSDWLIPIC 189
               R+F + H+T+ + +   KAK Y F+ DA+         KA +  + + + WL    
Sbjct: 109 GGGTRKFSSVHDTIGFFA---KAKDYYFDLDAVRIPYDAETKKARSRSIFVGAKWLEMGY 165

Query: 190 SGSE-----RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           +  +     RL  +  E+  HPTQKP  ++ R+L +S  PG ++LDPF GSGT+ A AK+
Sbjct: 166 NPKDVWSVSRLHKEHRERADHPTQKPLEIVERMLKASCPPGGVVLDPFMGSGTTAAAAKR 225

Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFN 291
             R F+G E+  +Y ++  KR+ +++ +    +    G+   P    N
Sbjct: 226 CGRHFVGFELNAEYCEMIEKRLQALESIPASNIAPAPGQELNPAAEEN 273


>gi|325498841|gb|EGC96700.1| methyltransferase [Escherichia fergusonii ECD227]
          Length = 294

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/282 (34%), Positives = 146/282 (51%), Gaps = 41/282 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +II G+++S L+KLP++SVDLIFADPPYN+  N           D + +SWD        
Sbjct: 18  RIIHGDALSELKKLPSESVDLIFADPPYNIGKN----------FDGLVESWD-------- 59

Query: 82  DAFTRAWLL----ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           DA  R+WL      C RVLK  G+++++ S  N+  I    + L F I + I+W   +  
Sbjct: 60  DADFRSWLFEIIAECHRVLKKQGSMYIMNSTENMPWIDLECRKL-FTIKSRIIWAYDSSG 118

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL------KAANEDVQMRSDWLIPICSG 191
              + + F + +E ++       AK YTFN DA+       A    +  R +   P  S 
Sbjct: 119 VQAK-KYFGSMYEPILMMVKD--AKNYTFNSDAILVEAKTGAKRALIDYRKNPPQPYNSQ 175

Query: 192 S--------ERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
                     R+R   D  + HPTQKP ALL RI+++S+ PGDI+LDPF GS T+G VA 
Sbjct: 176 KVPGNVWEFSRVRYLMDEYENHPTQKPVALLKRIILASSCPGDIVLDPFAGSFTTGKVAV 235

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
           +  R FIGIE+  +Y+ +  +R+         EL  +  ++T
Sbjct: 236 ETGRRFIGIEVNCEYVKMGLRRLNVDSHFSAEELAKVKKRKT 277


>gi|218550546|ref|YP_002384337.1| methyltransferase [Escherichia fergusonii ATCC 35469]
 gi|218358087|emb|CAQ90733.1| methyltransferase [Escherichia fergusonii ATCC 35469]
          Length = 299

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/282 (34%), Positives = 146/282 (51%), Gaps = 41/282 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +II G+++S L+KLP++SVDLIFADPPYN+  N           D + +SWD        
Sbjct: 23  RIIHGDALSELKKLPSESVDLIFADPPYNIGKN----------FDGLVESWD-------- 64

Query: 82  DAFTRAWLL----ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           DA  R+WL      C RVLK  G+++++ S  N+  I    + L F I + I+W   +  
Sbjct: 65  DADFRSWLFEIIAECHRVLKKQGSMYIMNSTENMPWIDLECRKL-FTIKSRIIWAYDSSG 123

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL------KAANEDVQMRSDWLIPICSG 191
              + + F + +E ++       AK YTFN DA+       A    +  R +   P  S 
Sbjct: 124 VQAK-KYFGSMYEPILMMVKD--AKNYTFNSDAILVEAKTGAKRALIDYRKNPPQPYNSQ 180

Query: 192 S--------ERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
                     R+R   D  + HPTQKP ALL RI+++S+ PGDI+LDPF GS T+G VA 
Sbjct: 181 KVPGNVWEFSRVRYLMDEYENHPTQKPVALLKRIILASSCPGDIVLDPFAGSFTTGEVAV 240

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
           +  R FIGIE+  +Y+ +  +R+         EL  +  ++T
Sbjct: 241 ETGRRFIGIEVNCEYVKMGLRRLNVDSHFSAEELAKVKKRKT 282


>gi|157148841|ref|YP_001456160.1| putative methyltransferase [Citrobacter koseri ATCC BAA-895]
 gi|157086046|gb|ABV15724.1| hypothetical protein CKO_04674 [Citrobacter koseri ATCC BAA-895]
          Length = 294

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/278 (33%), Positives = 145/278 (52%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G+++S L+KLP +S DLIFADPPYN+  N           D + +SWD+    E +
Sbjct: 16  KIIHGDALSELKKLPPESADLIFADPPYNIGKN----------FDGLVESWDE----ETF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+    +  C RVLK +GT++++ S  N+  +    + L F I + I+W   +     +
Sbjct: 62  LAWLFECIDECHRVLKKHGTMYIMNSTENMPYLDLKCRKL-FDIKSRIIWSYDSSGVQAK 120

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDAL------KAANEDVQMRSDWLIPICSGS--- 192
            + F + +E ++       AK YTFN D +       A    +  R +   P  +     
Sbjct: 121 -KYFGSMYEPILMMVKD--AKNYTFNRDDILVETKTGAKRALIDYRKNPPQPYNTQKVPG 177

Query: 193 -----ERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R   D  + HPTQKP ALLSRI+++S+ PGD +LDPF GS T+GAVA +  R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPRALLSRIILASSNPGDTVLDPFAGSFTTGAVAVETGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            F+GIE+  +Y+ +  +R+         EL  +  ++T
Sbjct: 238 KFVGIEINDEYVKMGIRRLNVTSHYAENELAKVKKRKT 275


>gi|205354287|ref|YP_002228088.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205274068|emb|CAR39074.1| putative adenine-specific DNA-modification methylase [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|326629410|gb|EGE35753.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 294

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/289 (32%), Positives = 147/289 (50%), Gaps = 53/289 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G++++ L+KLP++S+DLIFADPPYN+  +           D + +SWD+ S     
Sbjct: 16  KIIHGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDEASFL--- 62

Query: 82  DAFTRAWLL----ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
                AWL      C RVLK +GT++++ S  N+  I    + L F I + IVW   +  
Sbjct: 63  -----AWLYECIDECHRVLKKHGTMYIMNSTENMPYIDLKCRTL-FTIKSRIVWSYDSSG 116

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL------KAANEDVQMRSD-------- 183
              + + F + +E ++    +PK+  YTFN DA+       A    +  R +        
Sbjct: 117 VQAK-KYFGSMYEPILMMVKNPKS--YTFNRDAILVETTTGAKRALIDYRKNPPQPYNQK 173

Query: 184 ------WLIPICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
                 W  P      R+R   D  + HPTQKP ALL RI+++S+ P D +LDPF GS T
Sbjct: 174 KVPGNVWSFP------RVRYLMDEYENHPTQKPSALLKRIILASSNPSDTVLDPFAGSFT 227

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           +GAVA      FIGIE+  +Y+ +  +R++        EL  +  ++T+
Sbjct: 228 TGAVAAASGCKFIGIELNNEYVKMGLRRLSVTSHYSENELAKVKKRKTQ 276


>gi|213580282|ref|ZP_03362108.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 267

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 95/280 (33%), Positives = 143/280 (51%), Gaps = 53/280 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G++++ L+KLP++S+DLIFADPPYN+  +           D + +SWD+ S     
Sbjct: 16  KIIHGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDEASFL--- 62

Query: 82  DAFTRAWLL----ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
                AWL      C RVLK +GT++++ S  N+  I    + L F I + IVW   +  
Sbjct: 63  -----AWLYECIDECHRVLKKHGTMYIMNSTENMPYIDLKCRTL-FTIKSRIVWSYDSSG 116

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL------KAANEDVQMRSD-------- 183
              + + F + +E ++    +PK+  YTFN DA+       A    +  R +        
Sbjct: 117 VQAK-KYFGSMYEPILMMVKNPKS--YTFNRDAILVETTTGAKRALIDYRKNPPQPYNQK 173

Query: 184 ------WLIPICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
                 W  P      R+R   D  + HPTQKP ALL RI+++S+ P D +LDPF GS T
Sbjct: 174 KVPGNVWSFP------RVRYLMDEYENHPTQKPSALLKRIILASSNPSDTVLDPFAGSFT 227

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
           +GAVA    R FIGIE+  +Y+ +  +R++        EL
Sbjct: 228 TGAVAAASGRKFIGIELNNEYVKMGLRRLSVTSHYSENEL 267


>gi|317130947|ref|YP_004097229.1| Site-specific DNA-methyltransferase (adenine-specific) [Bacillus
           cellulosilyticus DSM 2522]
 gi|315475895|gb|ADU32498.1| Site-specific DNA-methyltransferase (adenine-specific) [Bacillus
           cellulosilyticus DSM 2522]
          Length = 254

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 123/249 (49%), Gaps = 10/249 (4%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I + N    ++ +P +S+ L+ ADPPYN+   G            + + WD       
Sbjct: 11  NRIYQRNCTEGMKMIPGESISLVIADPPYNIGKKGSFIEAKDKHHHTIREDWDNIP-LNE 69

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           ++ F   W+  C RVLKP G+L   GS+HNI  I  +++   + +    +W KSNP P++
Sbjct: 70  FEKFNNDWINECFRVLKPGGSLLAWGSHHNIHIIAQLMEQTGYDMKPFYIWEKSNPAPSW 129

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            GR    + E L+W +   K K +T+N D  K+ N    +++ +   +    E+ + +  
Sbjct: 130 SGRLPTTSTEYLLWGT---KGKNWTYNLDYAKSINNGKNIKNVFKTSLTPPKEKKKGR-- 184

Query: 201 EKLHPTQKP-EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
               P QK  E L   ++   +  GDIIL PF GSGT   VAK   R FI  E K +YI 
Sbjct: 185 ---FPCQKRIEGLTDHLVKLHSLKGDIILVPFCGSGTECVVAKMYGRDFISFETKPEYIV 241

Query: 260 IATKRIASV 268
           +A  R+  +
Sbjct: 242 LANNRLDDI 250


>gi|213028799|ref|ZP_03343246.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 279

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/276 (33%), Positives = 141/276 (51%), Gaps = 45/276 (16%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G++++ L+KLP++S+DLIFADPPYN+  +           D + +SWD+ S     
Sbjct: 16  KIIHGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDEASFL--- 62

Query: 82  DAFTRAWLL----ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
                AWL      C RVLK +GT++++ S  N+  I    + L F I + IVW   +  
Sbjct: 63  -----AWLYECIDECHRVLKKHGTMYIMNSTENMPYIDLKCRTL-FTIKSRIVWSYDSSG 116

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
              + + F + +E ++    +PK+  YTFN DA+         R+  LI       +  N
Sbjct: 117 VQAK-KYFGSMYEPILMMVKNPKS--YTFNRDAILVETTTGAKRA--LIDYRKNPPQPYN 171

Query: 198 K-----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           +                 D  + HPTQKP ALL RI+++S+ P D +LDPF GS T+GAV
Sbjct: 172 QKKVPGNVWSFPRVRYLMDEYENHPTQKPSALLKRIILASSNPSDTVLDPFAGSFTTGAV 231

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
           A    R FIGIE+  +Y+ +  +R++        EL
Sbjct: 232 AAASGRKFIGIELNNEYVKMGLRRLSVTSHYSENEL 267


>gi|237730180|ref|ZP_04560661.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226908786|gb|EEH94704.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 294

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 91/281 (32%), Positives = 148/281 (52%), Gaps = 37/281 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G++++ L+KLP++SV+LIFADPPYN+  +           D + +SWD+    EA+
Sbjct: 16  KIILGDALTELKKLPSESVELIFADPPYNIGKD----------FDGMVESWDE----EAF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+    +  C R+LKP+GT++++ S  N+  I    + L F I + IVW   +     +
Sbjct: 62  LAWLFECIDECHRILKPHGTMYIMNSTENMPYIDLKCRPL-FTIKSRIVWSYDSSGVQAK 120

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK--- 198
              F + +E ++        K YTFN D +    +    R+  LI       +  N+   
Sbjct: 121 NY-FGSMYEPILMMVKD--QKNYTFNRDDILVEAKTGAKRA--LIDYRKNPPQPYNQKKV 175

Query: 199 --------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
                         D  + HPTQKP+ALL RI+++S+ P D +LDPF GS T+GA A +L
Sbjct: 176 PGNVWEFPRVRYLMDEYENHPTQKPKALLERIILASSNPDDKVLDPFAGSFTTGATAVEL 235

Query: 245 RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
            R F+GIE+  +Y+ +  +R++       IEL  +  ++T+
Sbjct: 236 GRKFVGIEINTEYVKMGLRRLSIGSHFSEIELAKVKKRKTK 276


>gi|209757524|gb|ACI77074.1| putative methyltransferase [Escherichia coli]
          Length = 296

 Score =  132 bits (333), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 97/283 (34%), Positives = 142/283 (50%), Gaps = 45/283 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II GN+++ L+KLP +SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 19  IIHGNALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 61

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WLL     C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 62  LFI-DWLLEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 119

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 120 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 174

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 175 QKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVA 234

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
               R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 235 IASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 277


>gi|331649063|ref|ZP_08350151.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M605]
 gi|331042810|gb|EGI14952.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M605]
          Length = 296

 Score =  132 bits (333), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 97/287 (33%), Positives = 144/287 (50%), Gaps = 53/287 (18%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G++++ L+KLPA+SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 19  IIQGDALTELKKLPAESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 61

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 62  LFID-WLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 119

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS---------------- 182
             + + + + +E ++       AK YTFN DA+    +    R+                
Sbjct: 120 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALINYRKNPPQPYNHQK 176

Query: 183 ----DWLIPICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                W  P      R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+
Sbjct: 177 VPGNVWDFP------RVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTT 230

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
           GAVA    R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 231 GAVAVASGRKFIGIELNSEYIKMGLRRLDVASHYSAEELAKVKKRKT 277


>gi|330909313|gb|EGH37827.1| adenine-specific methyltransferase [Escherichia coli AA86]
          Length = 294

 Score =  132 bits (333), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 97/287 (33%), Positives = 144/287 (50%), Gaps = 53/287 (18%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G++++ L+KLPA+SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIQGDALTELKKLPAESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFID-WLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS---------------- 182
             + + + + +E ++       AK YTFN DA+    +    R+                
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALINYRKNPPQPYNHQK 174

Query: 183 ----DWLIPICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                W  P      R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+
Sbjct: 175 VPGNVWDFP------RVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTT 228

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
           GAVA    R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 229 GAVAVASGRKFIGIELNSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|331674779|ref|ZP_08375538.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA280]
 gi|331068218|gb|EGI39614.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA280]
          Length = 296

 Score =  132 bits (332), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 143/283 (50%), Gaps = 45/283 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 19  IIQGDALTELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 61

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 62  LFID-WLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 119

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 120 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 174

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 175 QKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVA 234

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
               R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 235 AASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 277


>gi|237705980|ref|ZP_04536461.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|26110282|gb|AAN82468.1|AE016767_228 Hypothetical adenine-specific methylase yhdJ [Escherichia coli
           CFT073]
 gi|91074267|gb|ABE09148.1| hypothetical adenine-specific methylase YhdJ [Escherichia coli
           UTI89]
 gi|226899020|gb|EEH85279.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
          Length = 296

 Score =  132 bits (332), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 97/287 (33%), Positives = 144/287 (50%), Gaps = 53/287 (18%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G++++ L+KLPA+SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 19  IIQGDALTELKKLPAESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 61

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 62  LFID-WLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 119

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS---------------- 182
             + + + + +E ++       AK YTFN DA+    +    R+                
Sbjct: 120 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALINYRKNPPQPYNHQK 176

Query: 183 ----DWLIPICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                W  P      R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+
Sbjct: 177 VPGNVWDFP------RVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTT 230

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
           GAVA    R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 231 GAVAVASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 277


>gi|110643506|ref|YP_671236.1| putative methyltransferase [Escherichia coli 536]
 gi|191173825|ref|ZP_03035346.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           F11]
 gi|300979712|ref|ZP_07174662.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 200-1]
 gi|110345098|gb|ABG71335.1| hypothetical adenine-specific methylase YhdJ [Escherichia coli 536]
 gi|190905875|gb|EDV65493.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           F11]
 gi|300307930|gb|EFJ62450.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 200-1]
 gi|315300926|gb|EFU60146.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 16-3]
 gi|324015871|gb|EGB85090.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 60-1]
          Length = 294

 Score =  132 bits (332), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 96/283 (33%), Positives = 143/283 (50%), Gaps = 45/283 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G++++ L+KLPA+SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIQGDALTELKKLPAESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFI-DWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 172

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 173 QKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVA 232

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
               R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 233 VASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|117625553|ref|YP_858876.1| putative methyltransferase [Escherichia coli APEC O1]
 gi|161486097|ref|NP_755894.2| putative methyltransferase [Escherichia coli CFT073]
 gi|162138359|ref|YP_542679.2| putative methyltransferase [Escherichia coli UTI89]
 gi|218560331|ref|YP_002393244.1| methyltransferase [Escherichia coli S88]
 gi|218691553|ref|YP_002399765.1| putative methyltransferase [Escherichia coli ED1a]
 gi|227887988|ref|ZP_04005793.1| site-specific DNA-methyltransferase (adenine-specific) [Escherichia
           coli 83972]
 gi|300991060|ref|ZP_07179481.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 45-1]
 gi|301047882|ref|ZP_07194929.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 185-1]
 gi|306816395|ref|ZP_07450527.1| putative methyltransferase [Escherichia coli NC101]
 gi|331659551|ref|ZP_08360493.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA206]
 gi|115514677|gb|ABJ02752.1| putative adenine-specific methylase YhdJ [Escherichia coli APEC O1]
 gi|218367100|emb|CAR04873.1| methyltransferase [Escherichia coli S88]
 gi|218429117|emb|CAR09924.1| methyltransferase [Escherichia coli ED1a]
 gi|222034978|emb|CAP77721.1| Uncharacterized adenine-specific methylase yhdJ [Escherichia coli
           LF82]
 gi|227835384|gb|EEJ45850.1| site-specific DNA-methyltransferase (adenine-specific) [Escherichia
           coli 83972]
 gi|281180304|dbj|BAI56634.1| putative methyltransferase [Escherichia coli SE15]
 gi|294489786|gb|ADE88542.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           IHE3034]
 gi|300300225|gb|EFJ56610.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 185-1]
 gi|300406981|gb|EFJ90519.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 45-1]
 gi|305849960|gb|EFM50419.1| putative methyltransferase [Escherichia coli NC101]
 gi|307555356|gb|ADN48131.1| DNA methylase [Escherichia coli ABU 83972]
 gi|307625138|gb|ADN69442.1| putative methyltransferase [Escherichia coli UM146]
 gi|312947819|gb|ADR28646.1| putative methyltransferase [Escherichia coli O83:H1 str. NRG 857C]
 gi|315294813|gb|EFU54156.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 153-1]
 gi|323951218|gb|EGB47093.1| DNA methylase [Escherichia coli H252]
 gi|323957590|gb|EGB53304.1| DNA methylase [Escherichia coli H263]
 gi|324009091|gb|EGB78310.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 57-2]
 gi|331054133|gb|EGI26162.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA206]
          Length = 294

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/287 (33%), Positives = 144/287 (50%), Gaps = 53/287 (18%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G++++ L+KLPA+SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIQGDALTELKKLPAESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFID-WLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS---------------- 182
             + + + + +E ++       AK YTFN DA+    +    R+                
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALINYRKNPPQPYNHQK 174

Query: 183 ----DWLIPICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                W  P      R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+
Sbjct: 175 VPGNVWDFP------RVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTT 228

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
           GAVA    R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 229 GAVAVASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|320194748|gb|EFW69378.1| Adenine-specific methyltransferase [Escherichia coli WV_060327]
          Length = 294

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/283 (33%), Positives = 143/283 (50%), Gaps = 45/283 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G++++ L+KLPA+SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIQGDALTELKKLPAESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFI-DWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 172

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 173 QKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVA 232

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
               R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 233 IASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|323966440|gb|EGB61874.1| DNA methylase [Escherichia coli M863]
 gi|327251356|gb|EGE63045.1| hypothetical protein ECSTEC7V_3896 [Escherichia coli STEC_7v]
          Length = 294

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 143/283 (50%), Gaps = 45/283 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIQGDALTELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFI-DWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 172

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 173 QKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVA 232

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
               R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 233 AASGRKFIGIEINSEYIKMGLRRLDVTSHYSAEELAKVKKRKT 275


>gi|218702035|ref|YP_002409664.1| putative methyltransferase [Escherichia coli IAI39]
 gi|300937389|ref|ZP_07152224.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 21-1]
 gi|218372021|emb|CAR19877.1| methyltransferase [Escherichia coli IAI39]
 gi|300457563|gb|EFK21056.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 21-1]
 gi|323189126|gb|EFZ74410.1| hypothetical protein ECRN5871_2725 [Escherichia coli RN587/1]
 gi|323979019|gb|EGB74097.1| DNA methylase [Escherichia coli TW10509]
          Length = 294

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 143/283 (50%), Gaps = 45/283 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIQGDALTELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFID-WLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 172

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 173 QKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVA 232

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
               R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 233 AASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|331664871|ref|ZP_08365776.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA143]
 gi|284923276|emb|CBG36370.1| putative DNA methylase [Escherichia coli 042]
 gi|331058119|gb|EGI30101.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA143]
          Length = 285

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/286 (33%), Positives = 144/286 (50%), Gaps = 45/286 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIQGDALTELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFI-DWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 172

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 173 QKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVA 232

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
               R FIGIE+  +YI +  +R+         EL  +  ++T  R
Sbjct: 233 VASGRKFIGIEINSEYIKMGLRRLDVTSHYSAEELAKVKKRKTGNR 278


>gi|218706876|ref|YP_002414395.1| putative methyltransferase [Escherichia coli UMN026]
 gi|293406864|ref|ZP_06650790.1| methyltransferase [Escherichia coli FVEC1412]
 gi|298382605|ref|ZP_06992202.1| adenine-specific DNA-methyltransferase [Escherichia coli FVEC1302]
 gi|300898034|ref|ZP_07116405.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 198-1]
 gi|218433973|emb|CAR14890.1| methyltransferase [Escherichia coli UMN026]
 gi|291426870|gb|EFE99902.1| methyltransferase [Escherichia coli FVEC1412]
 gi|298277745|gb|EFI19261.1| adenine-specific DNA-methyltransferase [Escherichia coli FVEC1302]
 gi|300358253|gb|EFJ74123.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 198-1]
          Length = 294

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/283 (33%), Positives = 142/283 (50%), Gaps = 45/283 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G++++ L+KLPA+SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIQGDALTELKKLPAESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFI-DWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 172

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPEALL RI++ S+ PGDI+LDPF GS T+GAVA
Sbjct: 173 QKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILGSSNPGDIVLDPFAGSFTTGAVA 232

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
               R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 233 VASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|293416687|ref|ZP_06659326.1| adenine-specific DNA-methyltransferase [Escherichia coli B185]
 gi|331654860|ref|ZP_08355860.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M718]
 gi|291432043|gb|EFF05026.1| adenine-specific DNA-methyltransferase [Escherichia coli B185]
 gi|331048242|gb|EGI20319.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M718]
          Length = 296

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/283 (33%), Positives = 142/283 (50%), Gaps = 45/283 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 19  IIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 61

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WLL     C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 62  LFI-DWLLEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 119

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 120 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 174

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 175 QKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVA 234

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
               R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 235 VSSGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 277


>gi|293412630|ref|ZP_06655353.1| adenine-specific methylase yhdJ [Escherichia coli B354]
 gi|291469401|gb|EFF11892.1| adenine-specific methylase yhdJ [Escherichia coli B354]
          Length = 296

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/286 (33%), Positives = 144/286 (50%), Gaps = 45/286 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 19  IIQGDALTELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 61

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 62  LFI-DWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 119

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 120 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 174

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 175 QKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVA 234

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
               R FIGIE+  +YI +  +R+         EL  +  ++T  R
Sbjct: 235 VASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNR 280


>gi|215488569|ref|YP_002331000.1| putative methyltransferase [Escherichia coli O127:H6 str. E2348/69]
 gi|312968407|ref|ZP_07782616.1| uncharacterized adenine-specific methylase yhdJ [Escherichia coli
           2362-75]
 gi|215266641|emb|CAS11080.1| predicted methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312286625|gb|EFR14536.1| uncharacterized adenine-specific methylase yhdJ [Escherichia coli
           2362-75]
          Length = 294

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 143/283 (50%), Gaps = 45/283 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIQGDALTELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFI-DWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 172

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 173 QKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVA 232

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
               R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 233 VASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|170680849|ref|YP_001745533.1| putative methyltransferase [Escherichia coli SMS-3-5]
 gi|170518567|gb|ACB16745.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           SMS-3-5]
          Length = 294

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 142/283 (50%), Gaps = 45/283 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G++++ L+K+PA SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIQGDALTELKKIPADSVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFID-WLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 172

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 173 QKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVA 232

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
               R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 233 AASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|331684902|ref|ZP_08385494.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H299]
 gi|331078517|gb|EGI49723.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H299]
          Length = 294

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 143/283 (50%), Gaps = 45/283 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIQGDALTELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFI-DWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 172

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 173 QKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVA 232

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
               R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 233 VASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|12517892|gb|AAG58390.1|AE005554_1 putative methyltransferase [Escherichia coli O157:H7 str. EDL933]
 gi|13363607|dbj|BAB37557.1| putative methyltransferase [Escherichia coli O157:H7 str. Sakai]
 gi|209757518|gb|ACI77071.1| putative methyltransferase [Escherichia coli]
 gi|209757520|gb|ACI77072.1| putative methyltransferase [Escherichia coli]
 gi|209757522|gb|ACI77073.1| putative methyltransferase [Escherichia coli]
 gi|209757526|gb|ACI77075.1| putative methyltransferase [Escherichia coli]
          Length = 296

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/283 (33%), Positives = 142/283 (50%), Gaps = 45/283 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 19  IIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 61

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WLL     C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 62  LFI-DWLLEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 119

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 120 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 174

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 175 QKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVA 234

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
               R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 235 IASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 277


>gi|38704155|ref|NP_312161.2| methyltransferase [Escherichia coli O157:H7 str. Sakai]
 gi|161367510|ref|NP_289830.2| putative methyltransferase [Escherichia coli O157:H7 EDL933]
 gi|168752562|ref|ZP_02777584.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4113]
 gi|168764877|ref|ZP_02789884.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4501]
 gi|168769125|ref|ZP_02794132.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4486]
 gi|168777678|ref|ZP_02802685.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4196]
 gi|168783831|ref|ZP_02808838.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4076]
 gi|168786155|ref|ZP_02811162.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC869]
 gi|168802604|ref|ZP_02827611.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC508]
 gi|195940006|ref|ZP_03085388.1| putative methyltransferase [Escherichia coli O157:H7 str. EC4024]
 gi|208807568|ref|ZP_03249905.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4206]
 gi|208812864|ref|ZP_03254193.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4045]
 gi|208819259|ref|ZP_03259579.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4042]
 gi|209400072|ref|YP_002272724.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4115]
 gi|217327970|ref|ZP_03444053.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. TW14588]
 gi|254795205|ref|YP_003080042.1| putative methyltransferase [Escherichia coli O157:H7 str. TW14359]
 gi|261228267|ref|ZP_05942548.1| predicted methyltransferase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255123|ref|ZP_05947656.1| predicted methyltransferase [Escherichia coli O157:H7 str. FRIK966]
 gi|291284629|ref|YP_003501447.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O55:H7 str. CB9615]
 gi|187767137|gb|EDU30981.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4196]
 gi|188013624|gb|EDU51746.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4113]
 gi|188998858|gb|EDU67844.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4076]
 gi|189361843|gb|EDU80262.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4486]
 gi|189365192|gb|EDU83608.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4501]
 gi|189373855|gb|EDU92271.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC869]
 gi|189375426|gb|EDU93842.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC508]
 gi|208727369|gb|EDZ76970.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4206]
 gi|208734141|gb|EDZ82828.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4045]
 gi|208739382|gb|EDZ87064.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4042]
 gi|209161472|gb|ACI38905.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4115]
 gi|217320337|gb|EEC28762.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. TW14588]
 gi|254594605|gb|ACT73966.1| predicted methyltransferase [Escherichia coli O157:H7 str. TW14359]
 gi|290764502|gb|ADD58463.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O55:H7 str. CB9615]
 gi|320189609|gb|EFW64268.1| Adenine-specific methyltransferase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320645624|gb|EFX14633.1| putative methyltransferase [Escherichia coli O157:H- str. 493-89]
 gi|320650934|gb|EFX19391.1| putative methyltransferase [Escherichia coli O157:H- str. H 2687]
 gi|320656315|gb|EFX24227.1| putative methyltransferase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320662005|gb|EFX29413.1| putative methyltransferase [Escherichia coli O55:H7 str. USDA 5905]
 gi|326337957|gb|EGD61791.1| Adenine-specific methyltransferase [Escherichia coli O157:H7 str.
           1125]
 gi|326347526|gb|EGD71251.1| Adenine-specific methyltransferase [Escherichia coli O157:H7 str.
           1044]
          Length = 294

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/283 (33%), Positives = 142/283 (50%), Gaps = 45/283 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WLL     C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFI-DWLLEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 172

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 173 QKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVA 232

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
               R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 233 IASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|331679335|ref|ZP_08380007.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H591]
 gi|332279906|ref|ZP_08392319.1| conserved hypothetical protein [Shigella sp. D9]
 gi|331073400|gb|EGI44723.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H591]
 gi|332102258|gb|EGJ05604.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 296

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 142/283 (50%), Gaps = 45/283 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 19  IIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 61

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 62  LFID-WLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 119

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 120 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 174

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 175 QKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVA 234

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
               R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 235 VSSGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 277


>gi|193066458|ref|ZP_03047503.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           E22]
 gi|192925887|gb|EDV80536.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           E22]
          Length = 294

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 142/283 (50%), Gaps = 45/283 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFID-WLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 172

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 173 QKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSTPGDIVLDPFAGSFTTGAVA 232

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
               R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 233 VSSGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|161506057|ref|YP_001573169.1| putative methyltransferase [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160867404|gb|ABX24027.1| hypothetical protein SARI_04244 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 294

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/291 (32%), Positives = 147/291 (50%), Gaps = 53/291 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G++++ L+KLP++S+DLIFADPPYN+  +           D + +SWD+ S     
Sbjct: 16  KIILGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDEASFL--- 62

Query: 82  DAFTRAWLLAC----RRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
                AWL  C     RVLK +GT++++ S  N+  I    + L F I + IVW   +  
Sbjct: 63  -----AWLYECVDECYRVLKKHGTMYIMNSTENMPYIDLKCRTL-FTIKSRIVWSYDSSG 116

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL------KAANEDVQMRSD-------- 183
              + + F + +E ++       +K YTFN DA+       A    +  R +        
Sbjct: 117 VQAK-KYFGSMYEPILMMVKD--SKTYTFNRDAILVETTTGAKRALIDYRKNPPQPYNQK 173

Query: 184 ------WLIPICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
                 W  P      R+R   D  + HPTQKP ALL RI+++S+  GD +LDPF GS T
Sbjct: 174 KVPGNVWSFP------RVRYLMDEYENHPTQKPSALLKRIILASSNLGDTVLDPFAGSFT 227

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
           +GAVA    R FIGIE+  +Y+ I  +R++        +L  +  ++T+ R
Sbjct: 228 TGAVAAASGRKFIGIEINNEYVKIGLRRLSVTSHYSENDLAKVKKRKTKNR 278


>gi|191169151|ref|ZP_03030909.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           B7A]
 gi|209920734|ref|YP_002294818.1| putative methyltransferase [Escherichia coli SE11]
 gi|256018824|ref|ZP_05432689.1| putative methyltransferase [Shigella sp. D9]
 gi|260846067|ref|YP_003223845.1| putative methyltransferase [Escherichia coli O103:H2 str. 12009]
 gi|260857389|ref|YP_003231280.1| putative methyltransferase [Escherichia coli O26:H11 str. 11368]
 gi|260870013|ref|YP_003236415.1| putative methyltransferase [Escherichia coli O111:H- str. 11128]
 gi|300824974|ref|ZP_07105073.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 119-7]
 gi|307314981|ref|ZP_07594569.1| DNA methylase N-4/N-6 domain protein [Escherichia coli W]
 gi|309793841|ref|ZP_07688267.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 145-7]
 gi|331670086|ref|ZP_08370931.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA271]
 gi|190900793|gb|EDV60584.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           B7A]
 gi|209913993|dbj|BAG79067.1| putative methyltransferase [Escherichia coli SE11]
 gi|257756038|dbj|BAI27540.1| predicted methyltransferase [Escherichia coli O26:H11 str. 11368]
 gi|257761214|dbj|BAI32711.1| predicted methyltransferase [Escherichia coli O103:H2 str. 12009]
 gi|257766369|dbj|BAI37864.1| predicted methyltransferase [Escherichia coli O111:H- str. 11128]
 gi|300522540|gb|EFK43609.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 119-7]
 gi|306905564|gb|EFN36096.1| DNA methylase N-4/N-6 domain protein [Escherichia coli W]
 gi|308122798|gb|EFO60060.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 145-7]
 gi|315062561|gb|ADT76888.1| predicted methyltransferase [Escherichia coli W]
 gi|320181533|gb|EFW56451.1| Adenine-specific methyltransferase [Shigella boydii ATCC 9905]
 gi|323154481|gb|EFZ40682.1| hypothetical protein ECEPECA14_3785 [Escherichia coli EPECa14]
 gi|323183021|gb|EFZ68420.1| hypothetical protein ECOK1357_3629 [Escherichia coli 1357]
 gi|323376852|gb|ADX49120.1| DNA methylase N-4/N-6 domain protein [Escherichia coli KO11]
 gi|324020744|gb|EGB89963.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 117-3]
 gi|324119442|gb|EGC13325.1| DNA methylase [Escherichia coli E1167]
 gi|331062999|gb|EGI34913.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA271]
          Length = 294

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 142/283 (50%), Gaps = 45/283 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFID-WLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 172

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 173 QKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVA 232

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
               R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 233 VSSGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|218696961|ref|YP_002404628.1| putative methyltransferase [Escherichia coli 55989]
 gi|218353693|emb|CAU99950.1| methyltransferase [Escherichia coli 55989]
 gi|320202171|gb|EFW76746.1| Adenine-specific methyltransferase [Escherichia coli EC4100B]
          Length = 294

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/286 (33%), Positives = 143/286 (50%), Gaps = 45/286 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFI-DWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 172

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 173 QKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVA 232

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
               R FIGIE+  +YI +  +R+         EL  +  ++T  R
Sbjct: 233 VASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNR 278


>gi|300958256|ref|ZP_07170403.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 175-1]
 gi|300315074|gb|EFJ64858.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 175-1]
          Length = 294

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/287 (33%), Positives = 143/287 (49%), Gaps = 53/287 (18%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFID-WLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS---------------- 182
             + + + + +E ++       AK YTFN DA+    +    R+                
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQK 174

Query: 183 ----DWLIPICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                W  P      R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+
Sbjct: 175 VPGNVWDFP------RMRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTT 228

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
           GAVA    R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 229 GAVAIASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|331643962|ref|ZP_08345093.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H736]
 gi|606203|gb|AAA58066.1| ORF_o296 [Escherichia coli str. K-12 substr. MG1655]
 gi|331037433|gb|EGI09657.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H736]
          Length = 296

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 142/283 (50%), Gaps = 45/283 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 19  IIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 61

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 62  LFID-WLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 119

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 120 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 174

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 175 QKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVA 234

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
               R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 235 IASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 277


>gi|323178558|gb|EFZ64134.1| hypothetical protein ECOK1180_2289 [Escherichia coli 1180]
          Length = 283

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/282 (33%), Positives = 141/282 (50%), Gaps = 45/282 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFID-WLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 172

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 173 QKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVA 232

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
               R FIGIE+  +YI +  +R+         EL  +  +R
Sbjct: 233 VSSGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKER 274


>gi|266582|sp|P29538|MTH1_HAEPA RecName: Full=Modification methylase HpaI; Short=M.HpaI; AltName:
           Full=Adenine-specific methyltransferase HpaI
 gi|216715|dbj|BAA01519.1| HpaI methyltransferase [Haemophilus parainfluenzae]
          Length = 314

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/251 (34%), Positives = 130/251 (51%), Gaps = 23/251 (9%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  N+I  L+ L   S+DLI  DPPYNL   G+ Y            + D   +F  Y
Sbjct: 4   RLICSNAIKALKNLEENSIDLIITDPPYNL---GKDY-----------GTTDDNLNFNKY 49

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML-QNLNFWILNDIVWRKSNPMPNF 140
             F+  WL  C RVLKP+GT+++      I  I  +L Q+L  +  + I W  +  +   
Sbjct: 50  LEFSHEWLEECYRVLKPHGTIYIFMGMKYISYIYKILEQDLGMYFNSWITWYYTQGIGKT 109

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ----MRSDWLIPICSGSERLR 196
           RG  +   H+ ++  +  PK   +TFN D ++   +  +    MR      +   S    
Sbjct: 110 RG--YSPRHDDILMFTKHPKK--FTFNLDRIRVPQKYYRSVNNMRGANPSNVWEFSHVHY 165

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                K HPTQKPEAL  R++++S+  GDI+LDPF GSGT   V K L RS IGI++ ++
Sbjct: 166 CNKNRKPHPTQKPEALYERMILASSNEGDIVLDPFVGSGTLNFVCKHLNRSGIGIDINKE 225

Query: 257 YIDIATKRIAS 267
           YI++A +R+ S
Sbjct: 226 YIEMAKERLDS 236


>gi|89110022|ref|AP_003802.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
           W3110]
 gi|90111566|ref|NP_417728.4| DNA adenine methyltransferase, SAM-dependent [Escherichia coli str.
           K-12 substr. MG1655]
 gi|170082790|ref|YP_001732110.1| methyltransferase [Escherichia coli str. K-12 substr. DH10B]
 gi|238902361|ref|YP_002928157.1| putative methyltransferase [Escherichia coli BW2952]
 gi|256024164|ref|ZP_05438029.1| putative methyltransferase [Escherichia sp. 4_1_40B]
 gi|300948348|ref|ZP_07162456.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 116-1]
 gi|301028293|ref|ZP_07191553.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 196-1]
 gi|301647038|ref|ZP_07246870.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 146-1]
 gi|307139950|ref|ZP_07499306.1| putative methyltransferase [Escherichia coli H736]
 gi|3915983|sp|P28638|YHDJ_ECOLI RecName: Full=DNA adenine methyltransferase YhdJ
 gi|85676053|dbj|BAE77303.1| predicted methyltransferase [Escherichia coli str. K12 substr.
           W3110]
 gi|87082238|gb|AAC76294.2| DNA adenine methyltransferase, SAM-dependent [Escherichia coli str.
           K-12 substr. MG1655]
 gi|169890625|gb|ACB04332.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238862670|gb|ACR64668.1| predicted methyltransferase [Escherichia coli BW2952]
 gi|260447711|gb|ACX38133.1| DNA methylase N-4/N-6 domain protein [Escherichia coli DH1]
 gi|299878636|gb|EFI86847.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 196-1]
 gi|300452137|gb|EFK15757.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 116-1]
 gi|301074788|gb|EFK89594.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 146-1]
 gi|309703681|emb|CBJ03022.1| putative DNA methylase [Escherichia coli ETEC H10407]
 gi|315137845|dbj|BAJ45004.1| putative methyltransferase [Escherichia coli DH1]
 gi|315617071|gb|EFU97681.1| uncharacterized adenine-specific methylase yhdJ [Escherichia coli
           3431]
 gi|323936255|gb|EGB32547.1| DNA methylase [Escherichia coli E1520]
          Length = 294

 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 142/283 (50%), Gaps = 45/283 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFID-WLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 172

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 173 QKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVA 232

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
               R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 233 IASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|300925993|ref|ZP_07141816.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 182-1]
 gi|301326296|ref|ZP_07219669.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 78-1]
 gi|300417937|gb|EFK01248.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 182-1]
 gi|300846997|gb|EFK74757.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 78-1]
          Length = 294

 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 96/286 (33%), Positives = 142/286 (49%), Gaps = 45/286 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFI-DWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 172

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 173 QKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVA 232

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
               R FIGIE+  +YI +  +R+         EL  +  ++T  R
Sbjct: 233 VSSGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNR 278


>gi|218555826|ref|YP_002388739.1| putative methyltransferase [Escherichia coli IAI1]
 gi|218362594|emb|CAR00219.1| methyltransferase [Escherichia coli IAI1]
          Length = 294

 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 141/283 (49%), Gaps = 45/283 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+K+PA+SVDLIFADPPYN+  N           D + + W +       D
Sbjct: 17  IIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEDWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFI-DWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 172

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 173 QKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVA 232

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
               R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 233 VSSGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|293449585|ref|ZP_06664006.1| adenine-specific DNA-methyltransferase [Escherichia coli B088]
 gi|291322675|gb|EFE62104.1| adenine-specific DNA-methyltransferase [Escherichia coli B088]
          Length = 296

 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 141/283 (49%), Gaps = 45/283 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 19  IIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 61

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 62  LFI-DWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 119

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 120 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 174

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 175 QKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVA 234

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
               R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 235 VSSGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 277


>gi|315289031|gb|EFU48429.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 110-3]
          Length = 294

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 96/287 (33%), Positives = 143/287 (49%), Gaps = 53/287 (18%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G++++ L+ LPA+SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIQGDALTELKNLPAESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFID-WLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS---------------- 182
             + + + + +E ++       AK YTFN DA+    +    R+                
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALINYRKNPPQPYNHQK 174

Query: 183 ----DWLIPICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                W  P      R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+
Sbjct: 175 VPGNVWDFP------RVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTT 228

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
           GAVA    R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 229 GAVAVASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|134096223|ref|YP_001101298.1| putative DNA-methyltransferase [Herminiimonas arsenicoxydans]
 gi|133740126|emb|CAL63177.1| Putative DNA methylase [Herminiimonas arsenicoxydans]
          Length = 269

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 141/273 (51%), Gaps = 33/273 (12%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           +W++++   ++++ L ++P  +VDLI ADPPY L   G+ Y  D           DK ++
Sbjct: 3   DWRNRVFCEDALAGLARIPDAAVDLIIADPPYGL---GKDYGNDS----------DKLAA 49

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            EAY  +   W+ A    LKPNG+L++  ++     +  ML+     ++N+I+W +  P 
Sbjct: 50  -EAYLQWMEQWIDAALPKLKPNGSLYIFLTWRYSPEVFVMLKK-RMTMINEIIWDRRVPS 107

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL---------KAANEDVQMRSDWL--- 185
                RRF + H+T+ + +    AK Y F+ DA+         KA +  + + + WL   
Sbjct: 108 MGGSTRRFSSVHDTVGFFA---GAKDYYFDLDAIRVPYDAVTKKARSRSIFVGAKWLELG 164

Query: 186 ---IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
                + S S   R       HPTQKP  ++ R+L +S  P  ++LDPF GSGT+   AK
Sbjct: 165 YNPKDVWSVSRLHREHRERADHPTQKPLEIIERMLKASCPPDGVVLDPFMGSGTTAVAAK 224

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           +  R F+G E+  +Y  +  KR+A++ PL  ++
Sbjct: 225 RCGRHFVGFELNAEYCALIEKRLAALVPLETVD 257


>gi|193071526|ref|ZP_03052436.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           E110019]
 gi|192955163|gb|EDV85656.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           E110019]
          Length = 294

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 96/286 (33%), Positives = 142/286 (49%), Gaps = 45/286 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFI-DWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 172

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 173 QKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVA 232

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
               R FIGIE+  +YI +  +R+         EL  +  ++T  R
Sbjct: 233 VASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNR 278


>gi|323162947|gb|EFZ48782.1| hypothetical protein ECE128010_0909 [Escherichia coli E128010]
          Length = 294

 Score =  130 bits (326), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 94/283 (33%), Positives = 141/283 (49%), Gaps = 45/283 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFI-DWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 172

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPE LL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 173 QKVPGNVWDFPRVRYLMDEYENHPTQKPEVLLKRIILASSNPGDIVLDPFAGSFTTGAVA 232

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
               R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 233 VSCGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|81247044|gb|ABB67752.1| putative methyltransferase [Shigella boydii Sb227]
          Length = 296

 Score =  130 bits (326), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 142/283 (50%), Gaps = 45/283 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 19  IIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 61

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 62  LFID-WLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 119

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + ++ ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 120 QAK-KHYGSMYDPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 174

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPEALL RI+++S+ PGDIILDPF GS T+GAVA
Sbjct: 175 QKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIILDPFAGSFTTGAVA 234

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
               R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 235 VSSGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 277


>gi|73857268|gb|AAZ89975.1| putative methyltransferase [Shigella sonnei Ss046]
          Length = 296

 Score =  130 bits (326), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 142/283 (50%), Gaps = 45/283 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 19  IIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 61

Query: 83  AFTRAWL----LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL    + C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 62  LFI-DWLFEVIVECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 119

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 120 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 174

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 175 QKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVA 234

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
               R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 235 IASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 277


>gi|157162743|ref|YP_001460061.1| putative methyltransferase [Escherichia coli HS]
 gi|157068423|gb|ABV07678.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli HS]
          Length = 294

 Score =  130 bits (326), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 96/286 (33%), Positives = 142/286 (49%), Gaps = 45/286 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFID-WLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 172

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 173 QKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVA 232

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
               R FIGIE+  +YI +  +R+         EL  +  ++T  R
Sbjct: 233 IASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNR 278


>gi|161986434|ref|YP_312210.2| putative methyltransferase [Shigella sonnei Ss046]
 gi|323165223|gb|EFZ51013.1| hypothetical protein SS53G_4688 [Shigella sonnei 53G]
          Length = 294

 Score =  130 bits (326), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 142/283 (50%), Gaps = 45/283 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWL----LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL    + C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFI-DWLFEVIVECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 172

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 173 QKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVA 232

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
               R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 233 IASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|161984845|ref|YP_409580.2| methyltransferase [Shigella boydii Sb227]
          Length = 294

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 142/283 (50%), Gaps = 45/283 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFI-DWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + ++ ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 118 QAK-KHYGSMYDPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 172

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPEALL RI+++S+ PGDIILDPF GS T+GAVA
Sbjct: 173 QKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIILDPFAGSFTTGAVA 232

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
               R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 233 VSSGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|323173479|gb|EFZ59108.1| hypothetical protein ECLT68_1794 [Escherichia coli LT-68]
          Length = 315

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 96/286 (33%), Positives = 142/286 (49%), Gaps = 53/286 (18%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFID-WLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS---------------- 182
             + + + + +E ++       AK YTFN DA+    +    R+                
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQK 174

Query: 183 ----DWLIPICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                W  P      R+R   D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+
Sbjct: 175 VPGNVWDFP------RVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTT 228

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
           GAVA    R FIGIE+  +YI +  +R+         EL  +  +R
Sbjct: 229 GAVAVASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKER 274


>gi|170018495|ref|YP_001723449.1| putative methyltransferase [Escherichia coli ATCC 8739]
 gi|188492784|ref|ZP_03000054.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           53638]
 gi|194440031|ref|ZP_03072088.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           101-1]
 gi|253771908|ref|YP_003034739.1| methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254163197|ref|YP_003046305.1| putative methyltransferase [Escherichia coli B str. REL606]
 gi|300904456|ref|ZP_07122302.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 84-1]
 gi|300928703|ref|ZP_07144221.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 187-1]
 gi|301304271|ref|ZP_07210385.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 124-1]
 gi|312972469|ref|ZP_07786643.1| uncharacterized adenine-specific methylase yhdJ [Escherichia coli
           1827-70]
 gi|169753423|gb|ACA76122.1| DNA methylase N-4/N-6 domain protein [Escherichia coli ATCC 8739]
 gi|188487983|gb|EDU63086.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           53638]
 gi|194421035|gb|EDX37065.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           101-1]
 gi|242378796|emb|CAQ33588.1| DNA adenine methyltransferase [Escherichia coli BL21(DE3)]
 gi|253322952|gb|ACT27554.1| DNA methylase N-4/N-6 domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975098|gb|ACT40769.1| predicted methyltransferase [Escherichia coli B str. REL606]
 gi|253979254|gb|ACT44924.1| predicted methyltransferase [Escherichia coli BL21(DE3)]
 gi|300403618|gb|EFJ87156.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 84-1]
 gi|300463292|gb|EFK26785.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 187-1]
 gi|300840397|gb|EFK68157.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 124-1]
 gi|310334846|gb|EFQ01051.1| uncharacterized adenine-specific methylase yhdJ [Escherichia coli
           1827-70]
 gi|315257188|gb|EFU37156.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 85-1]
 gi|323941645|gb|EGB37824.1| DNA methylase [Escherichia coli E482]
 gi|323961090|gb|EGB56704.1| DNA methylase [Escherichia coli H489]
 gi|323970323|gb|EGB65593.1| DNA methylase [Escherichia coli TA007]
 gi|332345217|gb|AEE58551.1| adenine-specific methylase YhdJ [Escherichia coli UMNK88]
          Length = 294

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 96/286 (33%), Positives = 142/286 (49%), Gaps = 45/286 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFI-DWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 172

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 173 QKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVA 232

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
               R FIGIE+  +YI +  +R+         EL  +  ++T  R
Sbjct: 233 IASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNR 278


>gi|332087253|gb|EGI92386.1| hypothetical protein SB521682_3384 [Shigella boydii 5216-82]
          Length = 294

 Score =  129 bits (325), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 141/283 (49%), Gaps = 45/283 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFID-WLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 172

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 173 QKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVA 232

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
               R FIGIE   +YI +  +R+         EL  +  ++T
Sbjct: 233 VSSGRKFIGIESNSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|332098818|gb|EGJ03775.1| hypothetical protein SB359474_0136 [Shigella boydii 3594-74]
          Length = 283

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 95/282 (33%), Positives = 141/282 (50%), Gaps = 45/282 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFID-WLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + ++ ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 118 QAK-KHYGSMYDPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 172

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPEALL RI+++S+ PGDIILDPF GS T+GAVA
Sbjct: 173 QKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIILDPFAGSFTTGAVA 232

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
               R FIGIE+  +YI +  +R+         EL  +  +R
Sbjct: 233 VSSGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKER 274


>gi|187732784|ref|YP_001881954.1| putative methyltransferase [Shigella boydii CDC 3083-94]
 gi|187429776|gb|ACD09050.1| DNA methylase, N4/N6-methyltransferase family [Shigella boydii CDC
           3083-94]
 gi|320177101|gb|EFW52117.1| Adenine-specific methyltransferase [Shigella dysenteriae CDC
           74-1112]
 gi|320184070|gb|EFW58890.1| Adenine-specific methyltransferase [Shigella flexneri CDC 796-83]
          Length = 294

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 45/283 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFID-WLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + ++ ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 118 QAK-KHYGSMYDPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 172

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 173 QKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVA 232

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
               R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 233 VSSGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|194430238|ref|ZP_03062735.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           B171]
 gi|194411709|gb|EDX28034.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           B171]
          Length = 294

 Score =  129 bits (324), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 94/283 (33%), Positives = 141/283 (49%), Gaps = 45/283 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFI-DWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 172

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPE LL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 173 QKVPGNVWDFPRVRYLMDEYENHPTQKPEVLLKRIILASSNPGDIVLDPFAGSFTTGAVA 232

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
               R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 233 VSSGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|323946891|gb|EGB42907.1| DNA methylase [Escherichia coli H120]
          Length = 294

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/283 (33%), Positives = 141/283 (49%), Gaps = 45/283 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFI-DWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 172

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPEALL RI+++S+ P DI+LDPF GS T+GAVA
Sbjct: 173 QKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPSDIVLDPFAGSFTTGAVA 232

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
               R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 233 VSSGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|283836189|ref|ZP_06355930.1| DNA (cytosine-5-)-methyltransferase [Citrobacter youngae ATCC
           29220]
 gi|291067540|gb|EFE05649.1| DNA (cytosine-5-)-methyltransferase [Citrobacter youngae ATCC
           29220]
          Length = 294

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 146/282 (51%), Gaps = 39/282 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G++++ L+KLP++SVDLIFADPPYN+  +           D + + W++    E +
Sbjct: 16  KIILGDALTELKKLPSESVDLIFADPPYNIGKD----------FDGMVERWNE----ETF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP---MP 138
            A+    +  C R+LKP+GT++++ S  N+  I    + + F I + IVW   +      
Sbjct: 62  LAWLFECIDECHRILKPHGTMYIMNSTENMPYIDLKCRQI-FTIKSRIVWSYDSSGVQAK 120

Query: 139 NFRGRRFQ--------------NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
           N+ G  ++              N  + L+ A    K     +  +  +  N+     + W
Sbjct: 121 NYFGSMYEPILMMVKDQKNYTFNRDDVLVEAKTGAKRALIDYRKNPPQPYNQKKVPGNVW 180

Query: 185 LIPICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
             P      R+R   D  + HPTQKP+ALL RI+++S+ P D +LDPF GS T+GA A +
Sbjct: 181 DFP------RVRYLMDEYENHPTQKPKALLERIILASSNPDDKVLDPFAGSFTTGATAVE 234

Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           L R F+GIE+  +Y+ +  +R++       +EL  +  ++T+
Sbjct: 235 LGRQFVGIEINAEYVKMGLRRLSIGSHFSEVELAKVKKRKTK 276


>gi|254038426|ref|ZP_04872484.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|226840050|gb|EEH72071.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
          Length = 294

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/283 (33%), Positives = 141/283 (49%), Gaps = 45/283 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFID-WLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 172

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPEALL RI+++S+ P DI+LDPF GS T+GAVA
Sbjct: 173 QKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPADIVLDPFAGSFTTGAVA 232

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
               R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 233 IASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|157157471|ref|YP_001464736.1| putative methyltransferase [Escherichia coli E24377A]
 gi|157079501|gb|ABV19209.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           E24377A]
          Length = 294

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/286 (33%), Positives = 142/286 (49%), Gaps = 45/286 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFI-DWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 172

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPT+KPEALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 173 QKVPGNVWDFPRVRYLMDEYENHPTRKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVA 232

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
               R FIGIE+  +YI +  +R+         EL  +  ++T  R
Sbjct: 233 VSSGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNR 278


>gi|300817483|ref|ZP_07097699.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 107-1]
 gi|300529781|gb|EFK50843.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 107-1]
          Length = 294

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/283 (33%), Positives = 141/283 (49%), Gaps = 45/283 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+K+PA+S DLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIHGDALAELKKIPAESDDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFI-DWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 172

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 173 QKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVA 232

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
               R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 233 VSSGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|283788096|ref|YP_003367961.1| DNA methylase [Citrobacter rodentium ICC168]
 gi|282951550|emb|CBG91249.1| putative DNA methylase [Citrobacter rodentium ICC168]
          Length = 291

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/281 (33%), Positives = 144/281 (51%), Gaps = 41/281 (14%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+KLPA+SVDLIFADPPYN+  +           D + +SWD+       +
Sbjct: 17  IILGDALNELKKLPAESVDLIFADPPYNIGKD----------FDGMIESWDE-------N 59

Query: 83  AFTRAWLLAC----RRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL AC     RVLK  GT++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  VFL-TWLFACIDECHRVLKKQGTMYIMNSTENMPHIDLKCRGL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL------KAANEDVQMRSDWLIPICSGS 192
             + + F + +E ++       AK YTFN +++       A    +  R +   P  +  
Sbjct: 118 QAK-KFFGSMYEPILMMVKD--AKHYTFNRESILVETKTGAKRALIDYRKNPPQPYNTQK 174

Query: 193 --------ERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
                    R+R   D  + HPTQKP ALL RI+++S+ PGD +LDPF GS T+GAVA  
Sbjct: 175 VPGNVWEFPRVRYLMDEYENHPTQKPMALLQRIVLASSNPGDTVLDPFAGSFTTGAVAVA 234

Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
             R FIGIE+  +Y+ +  +R+         EL  +  ++T
Sbjct: 235 AGRKFIGIEINTEYVKMGLRRMRVSSHFTTDELAKVKKRKT 275


>gi|300313354|ref|YP_003777446.1| DNA-methyltransferase [Herbaspirillum seropedicae SmR1]
 gi|300076139|gb|ADJ65538.1| DNA-methyltransferase (DNA-modification methylase) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 276

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 137/270 (50%), Gaps = 36/270 (13%)

Query: 19  WKDKIIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           W D++   +++S    L ++P  SVDL+ ADPPY L   G+ Y  D   +D         
Sbjct: 13  WLDRVFCEDALSAVGGLARIPDGSVDLMIADPPYGL---GKDYGNDSDKLDTA------- 62

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
               AY A+T  W+ A    LKPNG+L++  ++ N   I  ML+     ++N+I+W +  
Sbjct: 63  ----AYLAWTEQWVDAALPKLKPNGSLYIFLTWRNSPEIFVMLKQ-RMTMINEIIWDRRV 117

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL---------KAANEDVQMRSDWL- 185
           P      RR+ + H+T+ + +   +AK Y F+ DA+         KA +  + + + WL 
Sbjct: 118 PSMGGSTRRYSSVHDTIGFFA---RAKDYFFDLDAIRIPYDAQTKKARSRSIFVGAKWLE 174

Query: 186 -----IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
                  + S S   R       HPTQKP  ++ R++ +S  PG ++LDPF GSGT+   
Sbjct: 175 MGYNPKDVWSVSRLHREHKERADHPTQKPLEVVERMVKASCPPGGVVLDPFMGSGTTAVA 234

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
           A++  R F G E+  DY ++  +R+ ++ P
Sbjct: 235 ARRCGRHFTGFELNPDYCELIRQRLDALAP 264


>gi|300917417|ref|ZP_07134082.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 115-1]
 gi|300415327|gb|EFJ98637.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 115-1]
          Length = 294

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/286 (33%), Positives = 141/286 (49%), Gaps = 45/286 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFI-DWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 172

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HP QKPEALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 173 QKVPGNVWDFPRVRYLMDEYENHPKQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVA 232

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
               R FIGIE+  +YI +  +R+         EL  +  ++T  R
Sbjct: 233 IASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNR 278


>gi|303242614|ref|ZP_07329089.1| DNA methylase N-4/N-6 domain protein [Acetivibrio cellulolyticus
           CD2]
 gi|302589822|gb|EFL59595.1| DNA methylase N-4/N-6 domain protein [Acetivibrio cellulolyticus
           CD2]
          Length = 266

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/258 (34%), Positives = 140/258 (54%), Gaps = 31/258 (12%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +I G+ +SVL  L  K++DLIFADPPYNL   G+ +  D       +D+W   S    Y 
Sbjct: 20  VINGDCMSVLPYLKEKTIDLIFADPPYNL---GKDFGND-------SDNWKNKSE---YL 66

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            +  AW+  C RVLK NGT++++ S  NI  I   L+   + ++N+IVW   +     + 
Sbjct: 67  HWCYAWIDECFRVLKDNGTIYIMNSTQNISYIDVYLRE-KYNVINNIVWYYDSSGVQSK- 124

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALK------AANEDVQMRSDWLIPICSGS---- 192
            ++ + +E +I A+ S KA+ YTFN++ +K      A  + +  R     P  +      
Sbjct: 125 YKYGSLYEPVIMANKSAKAR-YTFNWENIKVEARTGAVRKLIDYRKTPPQPYNNEKVPGN 183

Query: 193 ----ERLRNKDGE-KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                R+R +  E + HP+QKPE LL RI+ +S+ P +I+LDPF G+ T+  VA +L R 
Sbjct: 184 VWEFSRVRYRMSEYENHPSQKPEILLERIVKASSNPDEIVLDPFSGTFTTAVVANRLGRK 243

Query: 248 FIGIEMKQDYIDIATKRI 265
            IGIE+   Y  I  +R+
Sbjct: 244 SIGIELNDCYYGIGLRRV 261


>gi|320535756|ref|ZP_08035839.1| DNA (cytosine-5-)-methyltransferase [Treponema phagedenis F0421]
 gi|320147387|gb|EFW38920.1| DNA (cytosine-5-)-methyltransferase [Treponema phagedenis F0421]
          Length = 252

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/262 (32%), Positives = 126/262 (48%), Gaps = 43/262 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ--LNGQLYRPDHSLVDAVTDSWD--KF 75
           K  +I G+    ++++P  S+DLI  DPPYNL     G +     + ++     WD   F
Sbjct: 9   KALLIHGDCFQKMKEIPDTSIDLILCDPPYNLAEYSTGNMKFDWRAEINNDVAEWDLITF 68

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWV------IGSYHNIFRIGTMLQNLNFWILNDI 129
              +  + FTR        +LKP G +++      IG YH IF       N  F     +
Sbjct: 69  DPQKLVEDFTR--------ILKPKGNIFIFTSYNLIGKYHEIF-------NPIFDTFQFM 113

Query: 130 VWRKSNPMPNFRGRRFQNAHETLI--WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
           VW K+NP+PN R   F N+ E ++  W       KG+T+N+          QM +    P
Sbjct: 114 VWHKTNPIPNVRKSSFLNSCELIVCLWN------KGHTWNFSTQN------QMHNFIETP 161

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           IC G ER++N      HPTQKP A+L  I+  ++   DI+ DPF G G++G  A  L R 
Sbjct: 162 ICMGKERIKNPK----HPTQKPLAVLEHIIKIASNENDIVFDPFMGVGSTGHAALNLNRR 217

Query: 248 FIGIEMKQDYIDIATKRIASVQ 269
           F+GIE+ + Y   A  R+   Q
Sbjct: 218 FLGIEIDKKYFAAACDRLTIFQ 239


>gi|332999339|gb|EGK18925.1| hypothetical protein SFK272_4070 [Shigella flexneri K-272]
          Length = 294

 Score =  127 bits (318), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 93/283 (32%), Positives = 141/283 (49%), Gaps = 45/283 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+KLP +SVDL+FADPPYN+  N           D + ++W +       D
Sbjct: 17  IIHGDALAELKKLPTESVDLLFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFI-DWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 172

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKP+ALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 173 QKVPGNVWDFPRVRYLMDEYENHPTQKPKALLKRIILASSNPGDIVLDPFAGSFTTGAVA 232

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
               R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 233 IASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|332998382|gb|EGK17981.1| hypothetical protein SFVA6_4185 [Shigella flexneri VA-6]
          Length = 294

 Score =  127 bits (318), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/287 (32%), Positives = 142/287 (49%), Gaps = 53/287 (18%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+KLP +SVDL+FADPPYN+  N           D + ++W +       D
Sbjct: 17  IIHGDALAELKKLPTESVDLLFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFI-DWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS---------------- 182
             + + + + +E ++       AK YTFN DA+    +    R+                
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIYYRKNPPQPYNHQK 174

Query: 183 ----DWLIPICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                W  P      R+R   D  + HPTQKP+ALL RI+++S+ PGDI+LDPF GS T+
Sbjct: 175 VPGNVWDFP------RVRYLMDEYENHPTQKPKALLKRIILASSNPGDIVLDPFAGSFTT 228

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
           GAVA    R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 229 GAVAIASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|320666839|gb|EFX33818.1| putative methyltransferase [Escherichia coli O157:H7 str. LSU-61]
          Length = 294

 Score =  126 bits (317), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 96/286 (33%), Positives = 141/286 (49%), Gaps = 51/286 (17%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WLL     C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFI-DWLLEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS---------------- 182
             + + + + +E ++       AK YTFN DA+    +    R+                
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQK 174

Query: 183 ----DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
                W  P      R    + E L PTQKPEALL RI+++S+ PGDI+LDPF GS T+G
Sbjct: 175 VPGNVWDFPRV----RYLMDEYENL-PTQKPEALLKRIILASSNPGDIVLDPFAGSFTTG 229

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
           AVA    R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 230 AVAIASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|30064593|ref|NP_838764.1| putative methyltransferase [Shigella flexneri 2a str. 2457T]
 gi|56480302|ref|NP_709057.2| putative methyltransferase [Shigella flexneri 2a str. 301]
 gi|110807122|ref|YP_690642.1| putative methyltransferase [Shigella flexneri 5 str. 8401]
 gi|30042852|gb|AAP18575.1| putative methyltransferase [Shigella flexneri 2a str. 2457T]
 gi|56383853|gb|AAN44764.2| putative methyltransferase [Shigella flexneri 2a str. 301]
 gi|110616670|gb|ABF05337.1| putative methyltransferase [Shigella flexneri 5 str. 8401]
 gi|281602639|gb|ADA75623.1| putative methyltransferase [Shigella flexneri 2002017]
 gi|313648496|gb|EFS12938.1| uncharacterized adenine-specific methylase yhdJ [Shigella flexneri
           2a str. 2457T]
 gi|332752424|gb|EGJ82814.1| hypothetical protein SF434370_3499 [Shigella flexneri 4343-70]
 gi|332754622|gb|EGJ84988.1| hypothetical protein SF274771_3895 [Shigella flexneri 2747-71]
 gi|332765261|gb|EGJ95488.1| methyltransferase DNA adenine methyltransferase [Shigella flexneri
           2930-71]
 gi|332999897|gb|EGK19480.1| hypothetical protein SFK218_4295 [Shigella flexneri K-218]
 gi|333014545|gb|EGK33892.1| hypothetical protein SFK304_4117 [Shigella flexneri K-304]
          Length = 294

 Score =  126 bits (317), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 93/283 (32%), Positives = 140/283 (49%), Gaps = 45/283 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++ + L+KLP +SVDL+FADPPYN+  N           D + ++W +       D
Sbjct: 17  IIHGDAFAELKKLPTESVDLLFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFI-DWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 172

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKP+ALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 173 QKVPGNVWDFPRVRYLMDEYENHPTQKPKALLKRIILASSNPGDIVLDPFAGSFTTGAVA 232

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
               R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 233 IASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|333014708|gb|EGK34054.1| hypothetical protein SFK227_3919 [Shigella flexneri K-227]
          Length = 283

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 93/282 (32%), Positives = 140/282 (49%), Gaps = 45/282 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+KLP +SVDL+FADPPYN+  N           D + ++W +       D
Sbjct: 17  IIHGDALAELKKLPTESVDLLFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFID-WLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 172

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKP+ALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 173 QKVPGNVWDFPRVRYLMDEYENHPTQKPKALLKRIILASSNPGDIVLDPFAGSFTTGAVA 232

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
               R FIGIE+  +YI +  +R+         EL  +  +R
Sbjct: 233 IASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKER 274


>gi|313202777|ref|YP_004041434.1| DNA methylase N-4/N-6 domain protein [Paludibacter propionicigenes
           WB4]
 gi|312442093|gb|ADQ78449.1| DNA methylase N-4/N-6 domain protein [Paludibacter propionicigenes
           WB4]
          Length = 235

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 85/248 (34%), Positives = 127/248 (51%), Gaps = 25/248 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSFEAY 81
           I   + +  L++LP + VDLIF DPPY  Q   Q  +   +  D VT+  +D F S + Y
Sbjct: 6   IYNQSCLDGLKQLPDECVDLIFTDPPY-YQHRAQNVQGLKNHKDVVTEFDFDGFKSEDEY 64

Query: 82  DAFTRAWLLACRRVLKP--NGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
             F    L+ C RV KP  +G LW    +  +  I  M++   F     I W K+NP P 
Sbjct: 65  LQFLEDVLMECFRVCKPGASGYLWCGDDF--VSFINRMVERTGFQFRKVIHWHKTNPFPA 122

Query: 140 FRGRR-FQNAHETLI-WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
              R+ + N+ E L+ ++  SPK    T+N+  +   +  +Q       PIC G ER + 
Sbjct: 123 MYTRKMYANSMELLVHFSKGSPK----TWNHKPVNDMHNFIQ------APICMGKERTK- 171

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
                 H TQKP  +    +  S+  GD++LDPF GSG++   AKKL+R+FIG E+  +Y
Sbjct: 172 ------HKTQKPLKVCMPFIEISSNEGDLVLDPFMGSGSTAVAAKKLKRNFIGYELSTEY 225

Query: 258 IDIATKRI 265
            +IA  R+
Sbjct: 226 CNIANSRL 233


>gi|332752465|gb|EGJ82854.1| hypothetical protein SFK671_3912 [Shigella flexneri K-671]
          Length = 283

 Score =  125 bits (315), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 93/282 (32%), Positives = 139/282 (49%), Gaps = 45/282 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++ + L+KLP +SVDL+FADPPYN+  N           D + ++W +       D
Sbjct: 17  IIHGDAFAELKKLPTESVDLLFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLLA----CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFID-WLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + + + + +E ++       AK YTFN DA+    +    R+  LI       +  N 
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNH 172

Query: 199 -----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                            D  + HPTQKP+ALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 173 QKVPGNVWDFPRVRYLMDEYENHPTQKPKALLKRIILASSNPGDIVLDPFAGSFTTGAVA 232

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
               R FIGIE+  +YI +  +R+         EL  +  +R
Sbjct: 233 IASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKER 274


>gi|311070542|ref|YP_003975465.1| DNA methylase N-4/N-6 domain-containing protein [Bacillus
           atrophaeus 1942]
 gi|310871059|gb|ADP34534.1| DNA methylase N-4/N-6 domain-containing protein [Bacillus
           atrophaeus 1942]
          Length = 360

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 148/313 (47%), Gaps = 54/313 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI  G+++++L  +P  SVDL+   PPYN+       RP                  E 
Sbjct: 36  NKIYNGDTMNMLLDIPDNSVDLVVTSPPYNINKFKNDRRP-----------------LEE 78

Query: 81  YDAFTRAWLLACRRVLKPNGTL-WVIGSYHN--------IFRIGTMLQNLNFWILNDIVW 131
           Y  +    +  C RVLKP+G++ W +G+Y N          R   + ++L  +  N IVW
Sbjct: 79  YLKWQTEIIEQCHRVLKPSGSIFWQVGTYVNDSGAHIPLDIRFFPIFESLGMFPRNRIVW 138

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA-----------ANEDVQM 180
            + + +     ++F   HET++W + +P+   Y F  D ++             ++  ++
Sbjct: 139 VRPHGL--HANKKFAGRHETILWFTKTPE---YKFFLDPIRVPQKYANKKHYKGDKKGEL 193

Query: 181 RSDWLIP----ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
             D L      + +      N + + +HPTQ PE ++ RI++S+T+P DI+LDPF G GT
Sbjct: 194 SGDPLGKNPGDVWAFRNVRHNHEEDTIHPTQYPEDMIERIVLSTTEPNDIVLDPFIGMGT 253

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
           + +VAK L R F G E++++Y+DIA + I S +P  N     L   R           + 
Sbjct: 254 TASVAKNLNRYFCGAEIEKEYVDIAYQ-ILSGEPDENNNFPNLKTLR-------QYCEKN 305

Query: 297 GLIQPGQILTNAQ 309
           G+I P Q     Q
Sbjct: 306 GIIDPSQYTFTRQ 318


>gi|20177971|sp|Q45489|MTB2_BACSU RecName: Full=Modification methylase BglII; Short=M.BglII; AltName:
           Full=N(4)- cytosine-specific methyltransferase BglII
 gi|1293620|gb|AAC45061.1| BglII modification methylase [Bacillus subtilis]
          Length = 360

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 148/313 (47%), Gaps = 54/313 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI  G+++++L  +P  SVDL+   PPYN+       RP                  E 
Sbjct: 36  NKIYNGDTMNMLLDIPDNSVDLVVTSPPYNINKFKNDRRP-----------------LEE 78

Query: 81  YDAFTRAWLLACRRVLKPNGTL-WVIGSYHN--------IFRIGTMLQNLNFWILNDIVW 131
           Y  +    +  C RVLKP+G++ W +G+Y N          R   + ++L  +  N IVW
Sbjct: 79  YLKWQTEIIEQCHRVLKPSGSIFWQVGTYVNDSGAHIPLDIRFFPIFESLGMFPRNRIVW 138

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA-----------ANEDVQM 180
            + + +     ++F   HET++W + +P+   Y F  D ++             ++  ++
Sbjct: 139 VRPHGL--HANKKFAGRHETILWFTKTPE---YKFFLDPIRVPQKYANKKHYKGDKKGEL 193

Query: 181 RSDWLIP----ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
             D L      + +      N + + +HPTQ PE ++ RI++S+T+P DI+LDPF G GT
Sbjct: 194 SGDPLGKNPGDVWAFRNVRHNHEEDTIHPTQYPEDMIERIVLSTTEPNDIVLDPFIGMGT 253

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
           + +VAK L R F G E++++Y+DIA + I S +P  N     L   R           + 
Sbjct: 254 TASVAKNLNRYFYGAEIEKEYVDIAYQ-ILSGEPDENNNFPNLKTLR-------QYCEKN 305

Query: 297 GLIQPGQILTNAQ 309
           G+I P Q     Q
Sbjct: 306 GIIDPSQYTFTRQ 318


>gi|283783020|ref|YP_003373774.1| DNA (cytosine-5-)-methyltransferase [Gardnerella vaginalis 409-05]
 gi|298253560|ref|ZP_06977350.1| DNA modification methylase [Gardnerella vaginalis 5-1]
 gi|283442049|gb|ADB14515.1| DNA (cytosine-5-)-methyltransferase [Gardnerella vaginalis 409-05]
 gi|297532327|gb|EFH71215.1| DNA modification methylase [Gardnerella vaginalis 5-1]
          Length = 239

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 123/253 (48%), Gaps = 26/253 (10%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS------WD 73
           K ++   + I  ++ L AKS+DLI  DPPYNL   G   +   + +  + D+      WD
Sbjct: 3   KIELYNDDCIVAMDNLRAKSIDLIVTDPPYNL---GSFMKTRDTNLKKMRDNFFAAAGWD 59

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
               FE +     ++     RV+K  G++ V  +   +  I  + +   F+     +W K
Sbjct: 60  DMG-FEEWKKSMESFFELSSRVMKKGGSMIVFMAIIKVETIIKLAEEYGFYYKTTGIWHK 118

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL-IPICSGS 192
           +NPMP      F N+ E   W   + K K  TFN            M  D++   +   S
Sbjct: 119 TNPMPRNMNLHFVNSTEA--WVYFTYKTKTGTFNNGG--------AMFHDFIETSVTPNS 168

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           ER   K     HPTQKPE+L+   +   + PGD ILDPF GSGT+G V+K+  R+FIGIE
Sbjct: 169 ERKYGK-----HPTQKPESLMQHFVEILSNPGDNILDPFMGSGTTGVVSKRAGRNFIGIE 223

Query: 253 MKQDYIDIATKRI 265
           +  +Y +IA  RI
Sbjct: 224 LNSEYYNIAKSRI 236


>gi|172036749|ref|YP_001803250.1| putative methyltransferase [Cyanothece sp. ATCC 51142]
 gi|171698203|gb|ACB51184.1| probable DNA-methyltransferase [Cyanothece sp. ATCC 51142]
          Length = 284

 Score =  123 bits (309), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 89/261 (34%), Positives = 141/261 (54%), Gaps = 35/261 (13%)

Query: 23  IIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           I+ G+SI +L++ +  +S+ LIF DPPYN+   G+ Y           +  DK+ + E Y
Sbjct: 12  ILFGDSIKLLDQEIQDESIHLIFVDPPYNI---GKKY----------ANFIDKWPTEENY 58

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +  +WL  C + L P G+++++ S   I  +   L+  +  IL+ I+W   +     +
Sbjct: 59  LLWCYSWLELCFKKLHPEGSIYLMASTQTIPYLDIYLRK-HIHILSRIIWHYDSSGVQAK 117

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS--DW--LIPICSGSE---- 193
              F + +E +I+   +PK+  YTFN D +K   +    R   D+   IP    S     
Sbjct: 118 NY-FGSLYEPIIYGVKNPKS--YTFNRDDIKVEAKTGSKRKLIDYRKAIPKVYNSHKVPG 174

Query: 194 --------RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
                   R R ++ EK HPTQKPEALL RI+++S+  GD ILDPF G+ T+ AVA+K+ 
Sbjct: 175 NVWYFPRVRYRMEEYEK-HPTQKPEALLKRIILASSNVGDTILDPFAGTFTTSAVAQKVG 233

Query: 246 RSFIGIEMKQDYIDIATKRIA 266
           R  IGIE+++DYI I  +R+ 
Sbjct: 234 RKSIGIEIEEDYIKIGLRRLG 254


>gi|218459652|ref|ZP_03499743.1| site-specific DNA-methyltransferase (adenine-specific) protein
           [Rhizobium etli Kim 5]
          Length = 101

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 57/97 (58%), Positives = 73/97 (75%)

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVG 335
           +TV+TGK+ E RVAFN+LVE GLI+PGQ+LT+A+   SA V ADGT+ SG E GSIHR+G
Sbjct: 1   MTVMTGKKAEVRVAFNVLVESGLIKPGQVLTDAKRRYSAIVRADGTVASGGEAGSIHRLG 60

Query: 336 AKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           AKV G + CNGW FW+FE    L  I+ LR ++R +L
Sbjct: 61  AKVQGLDACNGWTFWHFEDGQSLRPIDDLRSVIRSDL 97


>gi|218440461|ref|YP_002378790.1| methyltransferase [Cyanothece sp. PCC 7424]
 gi|218173189|gb|ACK71922.1| Site-specific DNA-methyltransferase (adenine-specific) [Cyanothece
           sp. PCC 7424]
          Length = 283

 Score =  122 bits (307), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 88/263 (33%), Positives = 141/263 (53%), Gaps = 33/263 (12%)

Query: 23  IIKGNSISVL-EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           I  G++++VL E++ ++S++LIF DPPYN+   G+ +           D +DK+ S E Y
Sbjct: 12  IFHGDALTVLLEEIDSESIELIFLDPPYNI---GKRF----------GDFYDKWLSDEDY 58

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +   WL  C RVLKPNGTL+V+ S  ++      L+     IL+ I+W   +      
Sbjct: 59  VEWAYKWLDECIRVLKPNGTLYVMTSTQSMPYFDIYLRK-KLTILSRIIWHYDSSGVQ-A 116

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALK------AANEDVQMRSDWLIPICSGS--- 192
            + F + +E ++        K Y FN +A+K      A  + +  R     P  +     
Sbjct: 117 SKYFGSMYEPILHCVKD--KKNYIFNSEAIKIEAKTGAKRKLIDYRKTIPTPYNTNKIPG 174

Query: 193 -----ERLRNKDGE-KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R +  E + HP+QKPE+LL RI+++S+   D+ILDPF G+ T+ AVAK+LRR
Sbjct: 175 NVWYFSRVRYRMEEYENHPSQKPESLLERIILASSNEKDLILDPFAGTFTAAAVAKRLRR 234

Query: 247 SFIGIEMKQDYIDIATKRIASVQ 269
           + I IE +++Y+ I  +RI   Q
Sbjct: 235 NSISIESQEEYLKIGLRRILDWQ 257


>gi|225870198|ref|YP_002746145.1| DNA methylase [Streptococcus equi subsp. equi 4047]
 gi|225699602|emb|CAW93244.1| putative DNA methylase [Streptococcus equi subsp. equi 4047]
          Length = 236

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 114/247 (46%), Gaps = 24/247 (9%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           GN + +L +L   S+D++  DPPYN+ +         + +D     WDK +         
Sbjct: 13  GNCLELLTELTDGSIDMVITDPPYNISVKNNFATMGRTGIDF--GDWDKGADL------- 63

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
            +W+    R L  NG + +   + N+  I    +     + +   W K NPMP  R RR+
Sbjct: 64  LSWIDIASRKLTKNGGMVIFNDWKNLGDIARHCEKTGLAVKDIFRWVKDNPMPRNRDRRY 123

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
               E  IW     K   + FN  + K        R ++  PI SG+E+ +       HP
Sbjct: 124 ITDSEYGIWVVR--KNSKWVFNRKSEKYD------RPEYRYPIVSGAEKTQ-------HP 168

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           TQKP AL+  I+   T    ++LDPF GSG++G       R FIG E+ +DY +IA KRI
Sbjct: 169 TQKPVALMRDIITRHTTKRAVVLDPFMGSGSTGVACLLTERDFIGYELNKDYFNIANKRI 228

Query: 266 ASVQPLG 272
           A +   G
Sbjct: 229 AELTGNG 235


>gi|261838927|gb|ACX98692.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter pylori
           52]
          Length = 232

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/229 (35%), Positives = 113/229 (49%), Gaps = 23/229 (10%)

Query: 39  SVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDK-FSSFEAYDAFTRAWLLACRRVL 96
            VD I  DPPYN+ +        ++    +    WDK F   E        W+     ++
Sbjct: 22  KVDAIITDPPYNISVKNNFSTLKNAKRQGIDFGEWDKNFKLLE--------WIKRYAPLV 73

Query: 97  KPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
            PNG + +  SY  I  I   L+   F + + I W K+NPMP    RR+    E  +WA 
Sbjct: 74  NPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMPRNINRRYVQDTEFALWAV 133

Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
              KAK + FN    K  NE          P+ SG ER++       HPTQK  AL+ +I
Sbjct: 134 KK-KAK-WVFN----KPKNEKYLRPLILKSPVVSGLERVK-------HPTQKSLALMEKI 180

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           +   T P DI+LDPF GSGT+G   K+L R+FIGIE +++Y  IA KR+
Sbjct: 181 ISIHTNPNDIVLDPFMGSGTTGLACKRLERNFIGIESEKEYFQIAKKRL 229


>gi|17546701|ref|NP_520103.1| DNA-methyltransferase (DNA-modification methylase) protein
           [Ralstonia solanacearum GMI1000]
 gi|17429000|emb|CAD15684.1| probable dna-methyltransferase (dna-modification methylase) protein
           [Ralstonia solanacearum GMI1000]
          Length = 270

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/267 (32%), Positives = 137/267 (51%), Gaps = 33/267 (12%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I   + I+ + +L   SVDL+ ADPPY L   G+ Y  D           DK S  EA
Sbjct: 7   DGIFNEDCIAGVGRLADGSVDLVIADPPYGL---GKDYGNDS----------DKLSG-EA 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y A++  W+ A    L  NG+L++  ++     +  ML+     ++N+I+W +  P    
Sbjct: 53  YLAWSERWIEAVLPKLARNGSLYLFCTWQYAPELFVMLKR-RLSMINEIIWDRRVPSMGG 111

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA--NEDVQMRS-------DWLIPICSG 191
             R+F + H+ + + + S   + Y F+ DA++     E  + RS        WL    + 
Sbjct: 112 STRKFSSVHDNIGFFAAS---RDYYFDVDAVRIPYDAETKKARSRKRFEGKKWLEVGYNP 168

Query: 192 SE-----RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
            +     RL  +D E+  HPTQKP  L+ R++++S  PG ++LDPF GSGT+ A   +L 
Sbjct: 169 KDVWSVSRLHRQDPERAEHPTQKPLELVERMVLASCPPGGLVLDPFLGSGTTAAACARLG 228

Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLG 272
           R F G E+  +Y  +A +R+A+V PLG
Sbjct: 229 RRFAGFEINAEYCRVARERVAAVTPLG 255


>gi|71911257|ref|YP_282807.1| adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS5005]
 gi|94989076|ref|YP_597177.1| adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS9429]
 gi|94992967|ref|YP_601066.1| adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS2096]
 gi|71854039|gb|AAZ52062.1| adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS5005]
 gi|94542584|gb|ABF32633.1| adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS9429]
 gi|94546475|gb|ABF36522.1| Adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS2096]
          Length = 283

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 124/259 (47%), Gaps = 26/259 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I  GN + +L +L    +D++  DPPYN+ +         + +D     WDK      +
Sbjct: 2   EIKCGNCLELLAELTDGLIDMVITDPPYNISVKNNFATMGRTGIDF--GDWDK-----GF 54

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV-WRKSNPMPNF 140
           D  +  W+    + L  NG + +   + N+  I    +  N  ++ DI  W K NPMP  
Sbjct: 55  DLLS--WIDIASQKLTKNGGMIIFNDWKNLGDIARHCEK-NGLVVKDIFRWVKDNPMPRN 111

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           R RR+    E  +W     K   + FN  + K        R ++  P+ +G+E+ +    
Sbjct: 112 RDRRYITDSEYGVWVVR--KKSKWVFNRKSEKYD------RPEYRYPVVAGAEKTQ---- 159

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
              HPTQKP AL+  I+   T  G ++LDPF GSG++G       R FIG E+ +DY +I
Sbjct: 160 ---HPTQKPVALMKDIITRHTTKGAVVLDPFMGSGSTGVACLLTGRDFIGYELNKDYFNI 216

Query: 261 ATKRIASVQPLGNIELTVL 279
           A KRIA +   G + + ++
Sbjct: 217 ANKRIAELTGNGGVGMNII 235


>gi|317179559|dbj|BAJ57347.1| adenine specific DNA methyltransferase [Helicobacter pylori F30]
          Length = 232

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/228 (35%), Positives = 113/228 (49%), Gaps = 23/228 (10%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDK-FSSFEAYDAFTRAWLLACRRVLK 97
           VD I  DPPYN+ +         +    +    WDK F   E        W+     ++ 
Sbjct: 23  VDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDKNFRLLE--------WIKRYASLVN 74

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
           PNG + +  SY  I  I   L+   F + + I W K+NPMP    RR+    E  +WA  
Sbjct: 75  PNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKTNPMPRNIHRRYVQDTEFALWAVK 134

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
             KAK + FN    K  NE          P+ SG ER++       HPTQK  AL+ +I+
Sbjct: 135 K-KAK-WVFN----KPKNEKYLRPLILKSPVVSGIERVK-------HPTQKSLALMEKII 181

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
              T P DI+LDPF GSGT+G   K+L+R+FIGIE +++Y  I+ KR+
Sbjct: 182 SIHTNPNDIVLDPFMGSGTTGLACKRLKRNFIGIESEKEYFQISKKRL 229


>gi|308061349|gb|ADO03237.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter pylori
           Cuz20]
          Length = 232

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/247 (33%), Positives = 119/247 (48%), Gaps = 23/247 (9%)

Query: 22  KIIKGNSISVLEKLPAKS--VDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDKFSSF 78
           +I   N+  +++    ++  VD I  DPPYN+ +         +    +    WDK   F
Sbjct: 3   QIYHANAFEIIKDFYQQNLKVDAIITDPPYNISVKNNFSTLKSATRQGIDFGEWDKNFKF 62

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
                    W+     ++ PNG + +  SY  I  I   L+   F + + I W K+NPMP
Sbjct: 63  -------LEWIKRYAPLVNPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMP 115

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
               RR+    E  +WA    KAK + FN    K  NE          P+  G ER++  
Sbjct: 116 RNINRRYVQDTEFALWAVKK-KAK-WVFN----KPKNEKYLRPLILKSPVVGGLERVK-- 167

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQK  AL+ +I+   T P DI+LDPF GSGT+G   K+L R+FIGIE +++Y 
Sbjct: 168 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLERNFIGIESEKEYF 222

Query: 259 DIATKRI 265
            IA KR+
Sbjct: 223 QIAKKRL 229


>gi|229826749|ref|ZP_04452818.1| hypothetical protein GCWU000182_02125 [Abiotrophia defectiva ATCC
           49176]
 gi|229789619|gb|EEP25733.1| hypothetical protein GCWU000182_02125 [Abiotrophia defectiva ATCC
           49176]
          Length = 312

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/273 (31%), Positives = 135/273 (49%), Gaps = 56/273 (20%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ--LNGQLYRPDHSLVDAVTDSWDKFSSF 78
           DK I GN++ +L  LP  SVDL+  DPPYNL    +G  +               K +S 
Sbjct: 37  DKTILGNTLEILSLLPENSVDLLIVDPPYNLDKDFHGNKF---------------KRTSG 81

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           E Y+ +T +W+   + +LK N T++V   + +  +I  +L+   F + N I W++     
Sbjct: 82  EIYEEYTESWIKLVKPLLKKNATIYVCCDWLSSSQIFMVLKEY-FHVQNRITWQRE---- 136

Query: 139 NFRGR----RFQNAHETLIWASPSPKAKGYTFNYDALK------AANEDVQMRSDWLIPI 188
             +GR     ++N  E + +A+ S K   YTFN +A+K      A  ++     DW    
Sbjct: 137 --KGRGALTNWKNGMEDIWFATNSNK---YTFNVEAVKVRRSVIAPYKEDGKPKDWEE-- 189

Query: 189 CSGSERLRNKDGEKL----------------HPTQKPEALLSRILVSSTKPGDIILDPFF 232
            +   R RN                      HPTQKPE LL++++++S+  GD++LDPF 
Sbjct: 190 -TKEGRFRNTYPSNFWDDISIPYWSMPENTAHPTQKPEKLLAKLILASSNEGDVVLDPFL 248

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           GSG++   AKKL R +IGIE  + Y   A KR+
Sbjct: 249 GSGSTSVTAKKLGRHYIGIEQNEQYCVWAEKRL 281


>gi|320101941|ref|YP_004177532.1| DNA methylase N-4/N-6 domain-containing protein [Isosphaera pallida
           ATCC 43644]
 gi|319749223|gb|ADV60983.1| DNA methylase N-4/N-6 domain protein [Isosphaera pallida ATCC
           43644]
          Length = 336

 Score =  120 bits (301), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/284 (31%), Positives = 133/284 (46%), Gaps = 54/284 (19%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W   I  G+ I+ + +L  KSVDLIFADPP+N+   G  Y       D   D  D     
Sbjct: 39  WDQVIHVGDCIAGMNQLEDKSVDLIFADPPFNI---GYTY-------DVYNDRCDD---- 84

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           + Y A++R W+ A  RVL P GT W+ IG          M + L       I+W  +  +
Sbjct: 85  QEYLAWSRRWIEAAVRVLSPTGTFWLAIGDDFAAELKVLMHRELGLTFRGWIIWYYTFGV 144

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD-------------- 183
                R+F  +H  L++ +  P+   +TFN DA++  +   ++ +D              
Sbjct: 145 --HCKRKFTRSHTHLLYFTRHPR--DFTFNADAIRVPSARQRVYNDKRAHPLGRVPDDTW 200

Query: 184 -----------------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
                            W +P   G+ R R    +  H  Q PE +L RI+ + + PGD+
Sbjct: 201 ILRPQDFPGGFGPDQSVWHVPRVCGTFRER----QGWHGCQMPERILGRIMSACSNPGDL 256

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
           +LDPF GSGT+ AVA+KL R  +G E+  DY   A +R+ SV+P
Sbjct: 257 VLDPFVGSGTTLAVARKLHRRGVGFELSADYAMNACQRLESVRP 300


>gi|15611114|ref|NP_222765.1| putative type II DNA modification enzyme (methyltransferase)
           [Helicobacter pylori J99]
 gi|4154542|gb|AAD05620.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
           [Helicobacter pylori J99]
          Length = 230

 Score =  120 bits (301), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 121/249 (48%), Gaps = 25/249 (10%)

Query: 22  KIIKGNSISVLEKLPAKS--VDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDK-FSS 77
           +I   N+  +++    ++  VD I  DPPYN+ +         +    +    WDK F  
Sbjct: 3   QIHHANAFEIIKDFHQQNLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDKNFKL 62

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E        W+     ++ PNG + +  SY  I  I   L+   F + + I W K+NPM
Sbjct: 63  LE--------WIARYASLINPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPM 114

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           P    RR+    E  +WA    KAK + FN    K  NE          P+ SG ER++ 
Sbjct: 115 PRNIHRRYVQDTEFALWAVKK-KAK-WVFN----KPKNEKYLRPLILKSPVVSGIERVK- 167

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
                 HPTQK   L+ +I+ + T P D +LDPF GSGT+G   K L+R+FIGIE +++Y
Sbjct: 168 ------HPTQKSLTLMEKIISTHTNPNDTVLDPFMGSGTTGLACKNLKRNFIGIESEKEY 221

Query: 258 IDIATKRIA 266
             IA KR++
Sbjct: 222 FQIAQKRLS 230


>gi|317013473|gb|ADU80909.1| putative type II DNA modification enzyme (methyltransferase)
           [Helicobacter pylori Gambia94/24]
          Length = 230

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/249 (33%), Positives = 121/249 (48%), Gaps = 25/249 (10%)

Query: 22  KIIKGNSISVLEKLPAKS--VDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDK-FSS 77
           +I   N+  +++    ++  VD I  DPPYN+ +         +    +    WDK F  
Sbjct: 3   QIHHANAFEIIKDFHQQNLKVDAIITDPPYNISVQNNFSTLKSAKRQGIDFGEWDKNFKL 62

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E        W+     ++ PNG + +  SY  I  I   L+   F + + I W K+NPM
Sbjct: 63  LE--------WITRYAPLINPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPM 114

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           P    RR+    E  +WA    KAK + FN    K  NE          P+ SG ER++ 
Sbjct: 115 PRNIHRRYVQDTEFALWAVKK-KAK-WVFN----KPENEKYLRPLILKSPVVSGIERVK- 167

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
                 HPTQK   L+ +I+   T P DI+LDPF GSGT+G   K L+R+FIGIE +++Y
Sbjct: 168 ------HPTQKSLVLMEKIISIHTNPNDIVLDPFMGSGTTGLACKNLKRNFIGIESEKEY 221

Query: 258 IDIATKRIA 266
             IA KR++
Sbjct: 222 FQIAQKRLS 230


>gi|329914377|ref|ZP_08276110.1| putative DNA-methyltransferase (DNA-modification methylase)
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327545139|gb|EGF30424.1| putative DNA-methyltransferase (DNA-modification methylase)
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 258

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 136/266 (51%), Gaps = 33/266 (12%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           +W++++   ++++ L ++P   +DLI ADPPY L   G+ Y  D           DK ++
Sbjct: 3   DWQNQVFCEDALAGLARIPDGVIDLILADPPYGL---GKDYGNDS----------DKLAT 49

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E Y A+   W+ A    LKPNG+L++  ++     I  +L+     ++N+IVW +  P 
Sbjct: 50  AE-YLAWMERWIDAALPKLKPNGSLYIFLTWRYSPEIFVLLKQ-RMTMVNEIVWDRRVPS 107

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL---------KAANEDVQMRSDWL--- 185
                R++ + H+T+ + + S   K Y F+ DA+         KA +  + + + WL   
Sbjct: 108 MGGTVRKYSSVHDTIGFFANS---KDYYFDLDAIRIPYDAVTKKARSRSIFVGAKWLELG 164

Query: 186 ---IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
                + S S   R       HPTQKP  ++ R++ +S  PG I+LDPF GSGT+   AK
Sbjct: 165 YNPKDVWSVSRLHREHRERADHPTQKPLEIIERMVKASCPPGGIVLDPFMGSGTTAVAAK 224

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASV 268
           +  R F+G E+  DY  +  +R+A +
Sbjct: 225 RAGRQFVGFELNADYCAMIAQRLAQL 250


>gi|299066411|emb|CBJ37596.1| Site-specific DNA-methyltransferase (adenine-specific) [Ralstonia
           solanacearum CMR15]
          Length = 270

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 86/267 (32%), Positives = 136/267 (50%), Gaps = 33/267 (12%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I   + I+ +  L   SVDL+ ADPPY L   G+ Y  D           DK S  EA
Sbjct: 7   DGIFNEDCIAGVGHLADGSVDLVIADPPYGL---GKDYGNDS----------DKLSG-EA 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y A++  W+ A    L  NG+L++  ++     +  ML+     ++N+I+W +  P    
Sbjct: 53  YLAWSERWIEAVLPKLARNGSLYLFCTWQYAPELFVMLKR-RLSMINEIIWDRRVPSMGG 111

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA--NEDVQMRS-------DWLIPICSG 191
             R+F + H+ + + + S   + Y F+ DA++     E  + RS        WL    + 
Sbjct: 112 STRKFSSVHDNIGFFAAS---RDYYFDVDAVRIPYDAETKKARSRKRFEGKKWLEVGYNP 168

Query: 192 SE-----RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
            +     RL  +D E+  HPTQKP  L+ R++++S  PG ++LDPF GSGT+ A   +L 
Sbjct: 169 KDVWSVSRLHRQDPERAEHPTQKPLELVERMVLASCPPGGLVLDPFLGSGTTAAACARLG 228

Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLG 272
           R F G E+  +Y  +A +R+A+V PLG
Sbjct: 229 RRFAGFEINAEYCRVARERVAAVTPLG 255


>gi|317179855|dbj|BAJ57641.1| adenine specific DNA methyltransferase [Helicobacter pylori F32]
          Length = 232

 Score =  120 bits (300), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/248 (33%), Positives = 121/248 (48%), Gaps = 25/248 (10%)

Query: 22  KIIKGNSISVLEKLPAKS--VDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDK-FSS 77
           +I   N+  +++    ++  VD I  DPPYN+ +         +    +    WDK F  
Sbjct: 3   QIYHANAFEIIKDFYQQNLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDKNFKL 62

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E        W+     ++ PNG + +  SY  I  I   L+   F + + I W K+NPM
Sbjct: 63  LE--------WIKRYAPLVNPNGCMVIFCSYRFISYIADFLEENGFIVKDFIQWVKNNPM 114

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           P    RR+    E  +WA    KAK + FN    K  NE          P+ SG ER++ 
Sbjct: 115 PRNINRRYVQDTEFALWAVKK-KAK-WVFN----KPKNEKYLRPLILKSPVVSGLERVK- 167

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
                 HPTQK   L+ +I+   T P DI+LDPF GSGT+G   K+L+R+FIGIE +++Y
Sbjct: 168 ------HPTQKSLDLMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLKRNFIGIESEKEY 221

Query: 258 IDIATKRI 265
             IA KR+
Sbjct: 222 FQIAKKRL 229


>gi|332672852|gb|AEE69669.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Helicobacter pylori 83]
          Length = 232

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/228 (35%), Positives = 112/228 (49%), Gaps = 23/228 (10%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDK-FSSFEAYDAFTRAWLLACRRVLK 97
           VD I  DPPYN+ +         +    +    WDK F   E        W+     ++ 
Sbjct: 23  VDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDKNFRLLE--------WIKRYAPLVN 74

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
           PNG + +  SY  I  I   L+   F + + I W K+NPMP    RR+    E  +WA  
Sbjct: 75  PNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMPRNISRRYVQDTEFALWAVK 134

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
             KAK + FN    K  NE          P+ SG ER++       HPTQK   L+ +I+
Sbjct: 135 K-KAK-WVFN----KPKNEKYLRPLILKSPVVSGLERVK-------HPTQKSLTLMEKII 181

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
              T P DI+LDPF GSGT+G   K+L+R+FIGIE +++Y  IA KR+
Sbjct: 182 SIHTNPNDIVLDPFMGSGTTGLACKRLKRNFIGIESEKEYFQIAKKRL 229


>gi|126658932|ref|ZP_01730074.1| DNA methylase N-4/N-6 [Cyanothece sp. CCY0110]
 gi|126619730|gb|EAZ90457.1| DNA methylase N-4/N-6 [Cyanothece sp. CCY0110]
          Length = 367

 Score =  119 bits (299), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 82/273 (30%), Positives = 132/273 (48%), Gaps = 55/273 (20%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I  G+ +++L +LP + VDL+ + PPYNL   G+ Y    +L              + 
Sbjct: 11  NQIFLGDCLALLSQLPNECVDLVISSPPYNL---GKEYEAKKAL--------------DN 53

Query: 81  YDAFTRAWLLACRRVLKPNGTL-WVIGSYHNI-------FRIGTMLQNLNFWILNDIVWR 132
           Y A     L  C R+LK  G++ W +G+Y N         R   +L++      N I+W 
Sbjct: 54  YLAEQTLVLQECSRILKKTGSIFWQVGAYSNQGSLIPLDIRFFPILESCGLIPRNRIIWV 113

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK-------------------A 173
           + + +      +F   HET++W + SPK   YTFN DA++                   +
Sbjct: 114 RQHGL--HAQNKFSCRHETILWFTKSPK---YTFNLDAIRIPQKYQNKKYYKGNKKGKLS 168

Query: 174 ANEDVQMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
            N   +   D WL           N + + +HP Q PE L++RI++++T   DII DP+ 
Sbjct: 169 CNPKGKNPGDIWLFRNVK-----HNHEEQTIHPCQFPEDLVARIILATTNSNDIIFDPYL 223

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           GSGT   V+K  +R FIG E+++ Y DIA +R+
Sbjct: 224 GSGTVAVVSKNYKRYFIGSEIEEKYYDIALRRL 256


>gi|188526859|ref|YP_001909546.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter pylori
           Shi470]
 gi|188143099|gb|ACD47516.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter pylori
           Shi470]
          Length = 232

 Score =  119 bits (298), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 81/229 (35%), Positives = 111/229 (48%), Gaps = 23/229 (10%)

Query: 39  SVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDK-FSSFEAYDAFTRAWLLACRRVL 96
            VD I  DPPYN+ +         +    +    WDK F   E        W+     ++
Sbjct: 22  KVDAIITDPPYNISVKNNFSTLKSATRQGIDFGEWDKNFRLLE--------WIKRYAPLV 73

Query: 97  KPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
            PNG + +  SY  I  I   L+   F + + I W K+NPMP    RR+    E  +WA 
Sbjct: 74  NPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMPRNINRRYVQDTEFALWAV 133

Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
              KAK + FN    K  NE          P+  G ER++       HPTQK  AL+ +I
Sbjct: 134 KK-KAK-WVFN----KPKNEKYLRPLILKSPVVGGLERVK-------HPTQKSLALMEKI 180

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           +   T P DI+LDPF GSGT+G   K L+R+FIGIE +++Y  IA KR+
Sbjct: 181 ISIHTNPNDIVLDPFMGSGTTGLACKHLKRNFIGIESEKEYFQIAKKRL 229


>gi|308062919|gb|ADO04806.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter pylori
           Sat464]
          Length = 232

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/229 (35%), Positives = 111/229 (48%), Gaps = 23/229 (10%)

Query: 39  SVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDK-FSSFEAYDAFTRAWLLACRRVL 96
            VD I  DPPYN+ +         +    +    WDK F   E        W+     ++
Sbjct: 22  KVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDKNFRLLE--------WIKRYAPLV 73

Query: 97  KPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
            PNG + +  SY  I  I   L+   F + + I W K+NPMP    RR+    E  +WA 
Sbjct: 74  NPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMPRNINRRYVQDTEFALWAV 133

Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
              KAK + FN    K  NE          P+  G ER++       HPTQK  AL+ +I
Sbjct: 134 KK-KAK-WVFN----KPKNEKYLRPLILKSPVVGGLERVK-------HPTQKSLALMEKI 180

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           +   T P DI+LDPF GSGT+G   K L+R+FIGIE +++Y  IA KR+
Sbjct: 181 ISIHTNPNDIVLDPFMGSGTTGLACKHLKRNFIGIESEKEYFQIAKKRL 229


>gi|317008725|gb|ADU79305.1| adenine specific DNA methyltransferase (putative type II)
           [Helicobacter pylori India7]
          Length = 232

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 110/229 (48%), Gaps = 23/229 (10%)

Query: 39  SVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDK-FSSFEAYDAFTRAWLLACRRVL 96
            VD I  DPPYN+ +         +    +    WDK F   E        W+     ++
Sbjct: 22  KVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDKNFKLLE--------WIKRYAPLI 73

Query: 97  KPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
            PNG + +  SY  I  I   L+   F + + I W K+NPMP    RR+    E  +WA 
Sbjct: 74  NPNGCIIIFCSYRFISYIADFLEENGFVVKDFIQWVKTNPMPRNLNRRYVQDTEFALWAV 133

Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
              KAK + FN    K  NE          P+  G ER++       HPTQK  AL+ +I
Sbjct: 134 KK-KAK-WVFN----KPENEKYLRPLILKSPVVGGLERVK-------HPTQKSLALMEKI 180

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           +   T P DI+LDPF GSGT+G   K L R+FIGIE++++Y   A KR+
Sbjct: 181 ISIHTNPNDIVLDPFMGSGTTGLACKNLERNFIGIELEKEYFQTAKKRL 229


>gi|208434020|ref|YP_002265686.1| adenine specific DNA methyltransferase (putative type II)
           [Helicobacter pylori G27]
 gi|208431949|gb|ACI26820.1| adenine specific DNA methyltransferase (putative type II)
           [Helicobacter pylori G27]
          Length = 232

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/228 (35%), Positives = 111/228 (48%), Gaps = 23/228 (10%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDK-FSSFEAYDAFTRAWLLACRRVLK 97
           VD I  DPPYN+ +         +    +    WDK F   E        W+     ++ 
Sbjct: 23  VDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDKNFRLLE--------WIKRYAPLIN 74

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
           PNG + +  SY  I  I   L+   F + + I W K+NPMP    RR+    E  +WA  
Sbjct: 75  PNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKTNPMPRNIHRRYVQDTEFALWAVK 134

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
             KAK + FN    K  NE          P+ SG ER++       HPTQK  AL+ +I+
Sbjct: 135 K-KAK-WVFN----KPKNEKYLRPLILKSPVVSGLERVK-------HPTQKSLALMEKII 181

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
              T P DI+LDPF GSGT+G   K L+R+FIGIE +++Y   A KR+
Sbjct: 182 SIHTNPNDIVLDPFMGSGTTGLACKNLKRNFIGIESEKEYFQTAKKRL 229


>gi|317010332|gb|ADU84079.1| adenine specific DNA methyltransferase (putative type II)
           [Helicobacter pylori SouthAfrica7]
          Length = 232

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 116/231 (50%), Gaps = 23/231 (9%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDK-FSSFEAYDAFTRAWLLACRRVLK 97
           VD I  DPPYN+ +         +    +    WDK F   E        W+     ++ 
Sbjct: 23  VDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDKNFKLLE--------WIALYAPLVN 74

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
           PNG + +  SY  +  I   L+   F + + I W K+NPM     RR+    E  +WA  
Sbjct: 75  PNGCMIIFCSYRFMSYIADFLEENGFVVKDFIQWVKTNPMLRNLNRRYVQDTEFALWAVK 134

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
             KAK + FN    +A    + ++S    P+ SG+ER++       HPTQK  AL+ +I+
Sbjct: 135 K-KAK-WVFNKPNNEAYLRPLILKS----PVVSGTERVK-------HPTQKSLALMEKII 181

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
              T P  ++LDPF GSGT+G   K L+R+FIGIE++++Y   A KR+ SV
Sbjct: 182 SIHTNPNHLVLDPFMGSGTTGLACKNLKRNFIGIELEKEYFQTAKKRLGSV 232


>gi|210134245|ref|YP_002300684.1| adenine specific DNA methyltransferase [Helicobacter pylori P12]
 gi|210132213|gb|ACJ07204.1| adenine specific DNA methyltransferase [Helicobacter pylori P12]
          Length = 230

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/229 (35%), Positives = 112/229 (48%), Gaps = 23/229 (10%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDK-FSSFEAYDAFTRAWLLACRRVLK 97
           VD I  DPPYN+ +         +    +    WDK F   E        W+     ++ 
Sbjct: 23  VDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDKNFKLLE--------WIKRYAPLVN 74

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
           PNG + +  SY  I  I   L+   F + + I W K+NPMP    RR+    E  +WA  
Sbjct: 75  PNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMPRNIHRRYVQDTEFALWAVK 134

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
             KAK + FN    K  NE          P+ SG ER++       HPTQK  AL+ +I+
Sbjct: 135 K-KAK-WVFN----KPKNEKYLRPLILKSPVVSGLERVK-------HPTQKSLALMEKIV 181

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
              T P DI+LDPF GSGT+G   K L+R+FIGIE +++Y   A KR++
Sbjct: 182 SIHTNPNDIVLDPFMGSGTTGLACKNLQRNFIGIESEKEYFQTAQKRLS 230


>gi|261837514|gb|ACX97280.1| adenine-methyltransferase [Helicobacter pylori 51]
          Length = 232

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/228 (35%), Positives = 111/228 (48%), Gaps = 23/228 (10%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDK-FSSFEAYDAFTRAWLLACRRVLK 97
           VD I  DPPYN+ +         +    +    WDK F   E        W+     ++ 
Sbjct: 23  VDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDKNFRLLE--------WIKRYAPLVN 74

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
           PNG + +  SY  I  I   L+   F I + I W K+NPMP    RR+    E  +WA  
Sbjct: 75  PNGCMVIFCSYRFISYIADFLEENGFVIKDFIQWVKTNPMPRNINRRYVQDTEFALWAVK 134

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
             KAK + FN    K  NE          P+ SG E+++       HPTQK   L+ +I+
Sbjct: 135 K-KAK-WVFN----KPKNEKYLRPLILKSPVVSGLEKVK-------HPTQKSLDLMEKII 181

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
              T P DI+LDPF GSGT+G   K+L R+FIGIE +++Y  IA KR+
Sbjct: 182 SIHTNPNDIVLDPFMGSGTTGLACKRLERNFIGIESEKEYFQIAKKRL 229


>gi|169838492|ref|ZP_02871680.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [candidate
           division TM7 single-cell isolate TM7a]
          Length = 100

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/95 (51%), Positives = 67/95 (70%)

Query: 51  LQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
           +Q  G+L R D +  + V D WDKF SF  YD F   WL  C+R+LK +G++ +IGS+ N
Sbjct: 1   MQTEGELLRTDGTKFNGVEDEWDKFDSFYEYDNFCNNWLKECKRILKKDGSICIIGSFQN 60

Query: 111 IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
           IFRIG ++QNL FWI+NDI+W KSNP+PNF  + +
Sbjct: 61  IFRIGYLMQNLEFWIINDIIWNKSNPVPNFLAQDY 95


>gi|209524406|ref|ZP_03272955.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
 gi|79835531|gb|ABB52099.1| Mod [Arthrospira platensis]
 gi|209495197|gb|EDZ95503.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
          Length = 295

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/262 (33%), Positives = 140/262 (53%), Gaps = 33/262 (12%)

Query: 20  KDKIIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           ++ I  G++I +L  ++ A SV+LIFADPPYN+   G+ +   H          D+++S 
Sbjct: 9   RNTIFHGDAIQILSSQIAANSVNLIFADPPYNI---GKKFSKFH----------DQWNSE 55

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           E Y  ++  WL  C RVLKPNGTL+V+ S  ++      L+     IL+ IVW   +   
Sbjct: 56  EDYINWSYQWLDECVRVLKPNGTLYVMTSTQSMPYFDIYLRQ-KMSILSRIVWHYDSSGV 114

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS--DWLIPICS--GSE- 193
             + + F + +E ++        K Y FN   +K   +    R   D+  P+ +   SE 
Sbjct: 115 QAK-KYFGSMYEPILHCVKD--QKNYIFNSADIKVEAKTGAQRKLIDYRKPVPTQYNSEK 171

Query: 194 ---------RLRNKDGE-KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
                    R+R +  E + HP QKPE+LL RI+++ST   D++LDPF G+ T+ AVAK+
Sbjct: 172 VPGNVWYFPRVRYRMAEYENHPAQKPESLLERIILASTNTHDLVLDPFAGTFTTAAVAKR 231

Query: 244 LRRSFIGIEMKQDYIDIATKRI 265
           L R  + IE +++Y+ I  +R+
Sbjct: 232 LGRISMSIESQEEYLKIGLRRV 253


>gi|315586054|gb|ADU40435.1| site-specific DNA-methyltransferase (adenine-specific)
           [Helicobacter pylori 35A]
          Length = 232

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/248 (33%), Positives = 119/248 (47%), Gaps = 25/248 (10%)

Query: 22  KIIKGNSISVLEKLPAKS--VDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDK-FSS 77
           +I   NS  +++    +   VD I  DPPYN+ +         +    +    WDK F  
Sbjct: 3   QIHHANSFEIIKDFYQQDLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDKNFRL 62

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E        W+     ++ PNG + +  SY  I  I   L+   F + + I W K+NPM
Sbjct: 63  LE--------WIKRYAPLVNPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPM 114

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           P    R +    E  +WA    KAK + FN    K  NE          P+ SG E+++ 
Sbjct: 115 PRNINRHYVQDTEFALWAVKK-KAK-WVFN----KPENEKYLRPLILKSPVVSGLEKVK- 167

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
                 HPTQK  AL+ +I+   T P DI+LDPF GSGT+G   K+L R+FIGIE +++Y
Sbjct: 168 ------HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLERNFIGIESEKEY 221

Query: 258 IDIATKRI 265
             IA KR+
Sbjct: 222 FQIAKKRL 229


>gi|319410295|emb|CBY90637.1| putative type II restriction methyltransferase [Neisseria
           meningitidis WUE 2594]
          Length = 285

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/257 (32%), Positives = 132/257 (51%), Gaps = 31/257 (12%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +I G+ + VL+ LP+ SVDLIFADPPY +  +               ++ D F+    Y 
Sbjct: 14  VILGDCLEVLKTLPSSSVDLIFADPPYGIGKD-------------FGNNKDFFADAYQYL 60

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            +  +W+  C RVLK NGT++++ S   +  +   +    ++I+N IVW   +     + 
Sbjct: 61  DWCASWIDECMRVLKDNGTMYLMSSVQYMPILDRYVDE-KYFIINRIVWSYDSSGVQAKN 119

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDAL------KAANEDVQMRSDWLIPICSGS---- 192
           + F + +E ++  +    +K YTFN + +       A  + +  R     P  +      
Sbjct: 120 K-FGSTYEPILMFTHHKNSK-YTFNSEDILIEAKTGAERKLIDYRKTPPQPYNAKKIPSN 177

Query: 193 ----ERLRNK-DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                R+R K D  + HPTQKPE LL RI+++S+  GD ILDPF GS T+ +VA +L+R 
Sbjct: 178 VWEFNRVRYKMDEYENHPTQKPEKLLERIILASSNKGDTILDPFSGSFTTSSVAVRLKRK 237

Query: 248 FIGIEMKQDYIDIATKR 264
            IGIE+  DY  I  +R
Sbjct: 238 AIGIEINPDYFKIGIRR 254


>gi|307636736|gb|ADN79186.1| Adenine-specific methyltransferase [Helicobacter pylori 908]
 gi|325995322|gb|ADZ50727.1| Adenine-specific methyltransferase [Helicobacter pylori 2018]
 gi|325996920|gb|ADZ49128.1| Adenine-specific methyltransferase [Helicobacter pylori 2017]
          Length = 232

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/248 (32%), Positives = 119/248 (47%), Gaps = 25/248 (10%)

Query: 22  KIIKGNSISVLEKLPAKS--VDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDK-FSS 77
           +I   N+  +++    ++  VD I  DPPYN+ +         +    +    WDK F  
Sbjct: 3   QIYHANAFEIIKDFHQQNLKVDAIITDPPYNISVQNNFSTLKSAKRQGIDFGEWDKNFKL 62

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E        W+     ++ PNG + +  SY  I  I   L+   F + + I W K+NPM
Sbjct: 63  LE--------WIARYAPLINPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPM 114

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           P    RR+    E  +WA    KAK + FN    K  NE          P+ SG ER++ 
Sbjct: 115 PRNIHRRYVQDTEFALWAVKK-KAK-WVFN----KPENEKYLRPLILKSPVVSGIERVK- 167

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
                 HPTQK  AL+ +I+   T P +++LDPF GSGT+G   K L+R FIGIE +++Y
Sbjct: 168 ------HPTQKSLALMEKIVSIHTNPNNVVLDPFMGSGTTGLACKNLKRKFIGIESEKEY 221

Query: 258 IDIATKRI 265
              A KR+
Sbjct: 222 FQTAQKRL 229


>gi|220906264|ref|YP_002481575.1| DNA methylase N-4/N-6 domain-containing protein [Cyanothece sp. PCC
           7425]
 gi|219862875|gb|ACL43214.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7425]
          Length = 323

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/281 (31%), Positives = 134/281 (47%), Gaps = 62/281 (22%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I  +  + L+ LP +SVDL+F DPPYNL      +R     ++  TD           
Sbjct: 48  RTIHQDLFTTLDFLPHRSVDLLFIDPPYNLDKTFNTHRFKKKDLETYTD----------- 96

Query: 82  DAFTRAWLLAC----RRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
                 WL +C     R+LKP  ++++   + +   +  ++++  F I N I W +    
Sbjct: 97  ------WLASCLNGLERMLKPTASIYICSDWQSSPAVFEVIKH-RFQIRNRITWEREKG- 148

Query: 138 PNFRG--RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ------MRSDWLIPIC 189
              RG  R ++NA E + + + S +   YTFN +A+K   + +       M  DW I   
Sbjct: 149 ---RGASRNWKNASEDIWFCTVSDR---YTFNVEAVKLKRKVMAPYTVNGMPKDWEI-TD 201

Query: 190 SGSERL------------------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
            G+ RL                   N D    HPTQKPE LL++I+++S+ PGD+I DPF
Sbjct: 202 QGNYRLTYPSNLWTDLTVPFWSMPENTD----HPTQKPEKLLAKIILASSNPGDVIFDPF 257

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR--IASVQP 270
            GSGT+   AKKL R + G+EM + Y  +  KR  IA   P
Sbjct: 258 LGSGTTSVAAKKLGRQYFGVEMDELYCCLTEKRLKIAEADP 298


>gi|108562471|ref|YP_626787.1| adenine specific DNA methyltransferase [Helicobacter pylori HPAG1]
 gi|107836244|gb|ABF84113.1| adenine specific DNA methyltransferase [Helicobacter pylori HPAG1]
          Length = 230

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 111/229 (48%), Gaps = 23/229 (10%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDK-FSSFEAYDAFTRAWLLACRRVLK 97
           VD I  DPPYN+ +         +    +    WDK F   E        W+     ++ 
Sbjct: 23  VDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDKNFKLLE--------WIKRYAPLVN 74

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
           PNG + +  SY  I  I   L+   F + + I W K+NPMP    RR+    E  +WA  
Sbjct: 75  PNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKTNPMPRNIHRRYVQDTEFALWAVK 134

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
             KAK + FN    K  NE          P+ SG E+ +       HPTQK  AL+ +I+
Sbjct: 135 K-KAK-WVFN----KPKNEKYLRPLILKSPVVSGIEKTK-------HPTQKSLALMEKII 181

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
              T P DI+LDPF GSGT+G   K L+R+FIGIE +++Y   A KR++
Sbjct: 182 SIHTNPNDIVLDPFMGSGTTGLACKNLKRNFIGIESEKEYFQTAQKRLS 230


>gi|207092046|ref|ZP_03239833.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 232

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 110/228 (48%), Gaps = 23/228 (10%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDK-FSSFEAYDAFTRAWLLACRRVLK 97
           VD I  DPPYN+ +         +    +    WDK F   E        W+     ++ 
Sbjct: 23  VDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDKNFKLLE--------WIKHYAPLVN 74

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
           PNG + +  SY  I  I   L+   F + + I W K+NPMP    RR+    E  +WA  
Sbjct: 75  PNGCMIIFCSYRFISYIADFLEENGFVVKDFIQWVKTNPMPRNIHRRYVQDTEFALWAVK 134

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
             KAK + FN    K  NE          P+ SG E+++       HPTQK  AL+ +I+
Sbjct: 135 K-KAK-WVFN----KPKNEKYLRPLILKSPVVSGLEKVK-------HPTQKSLALMEKII 181

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
              T P DI+LDPF GSGT+G   K L R+FIGIE +++Y   A KR+
Sbjct: 182 SIHTNPNDIVLDPFMGSGTTGLACKNLERNFIGIESEKEYFQTAKKRL 229


>gi|257125924|ref|YP_003164038.1| methyltransferase [Leptotrichia buccalis C-1013-b]
 gi|257049863|gb|ACV39047.1| DNA methylase N-4/N-6 domain protein [Leptotrichia buccalis
           C-1013-b]
          Length = 297

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/266 (31%), Positives = 131/266 (49%), Gaps = 31/266 (11%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G+ + +L  +   SV+LIFADPPY +  N               +  D F + E Y  + 
Sbjct: 25  GDCLDILRSIEDNSVNLIFADPPYGIGKN-------------FGNDSDFFKNKEEYFDWA 71

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
           + W+  C R+LK +GT++ + S         M  + N++++N I+W   +     + + F
Sbjct: 72  KKWIDECMRILKEDGTMYFMTSTQ-FMPFLDMYVDDNYYVINRIIWTYDSSGVQAKTK-F 129

Query: 146 QNAHETLIWASPSPKAKGYTFNY-DALKAANED-----VQMRSDWLIPICSGS------- 192
            + +E ++  + S K+K YTFNY D L   N       +  R     P  +         
Sbjct: 130 GSLYEPILMVTHSKKSK-YTFNYQDILIETNTGAKRKLIDYRKTPPQPYNTKKVPGNVWD 188

Query: 193 -ERLRNKDGE-KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
             R+R +  E + HPTQKPE LL RI+++S+   DI+LDPF GS T+ AVA+KL R  IG
Sbjct: 189 FSRVRYRMEEYENHPTQKPEELLKRIILASSNENDIVLDPFSGSFTTSAVAQKLNRKTIG 248

Query: 251 IEMKQDYIDIATKRIASVQPLGNIEL 276
           IE   +Y  I  +R+        ++L
Sbjct: 249 IETNLEYFKIGLRRLNITDEYNGVKL 274


>gi|254778782|ref|YP_003056887.1| Type II adenine methyltransferase [Helicobacter pylori B38]
 gi|254000693|emb|CAX28602.1| Type II adenine methyltransferase [Helicobacter pylori B38]
          Length = 232

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 110/228 (48%), Gaps = 23/228 (10%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDK-FSSFEAYDAFTRAWLLACRRVLK 97
           VD I  DPPYN+ +         +    +    WDK F   E        W+     ++ 
Sbjct: 23  VDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDKNFRLLE--------WIKRYAPLIN 74

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
           PNG + +  SY  I  I   L+   F + + I W K+NPMP    RR+    E  +WA  
Sbjct: 75  PNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKTNPMPRNIHRRYVQDTEFALWAVK 134

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
             KAK + FN    K  NE          P+ SG E+ +       HPTQK  AL+ +I+
Sbjct: 135 K-KAK-WVFN----KPKNEKYLRPLILKSPVVSGLEKTK-------HPTQKSLALMEKII 181

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
              T P DI+LDPF GSGT+G   K L+R+FIGIE +++Y   A KR+
Sbjct: 182 SIHTNPNDIVLDPFMGSGTTGLACKNLKRNFIGIESEKEYFQTAKKRL 229


>gi|168703324|ref|ZP_02735601.1| adenine-specific methyltransferase [Gemmata obscuriglobus UQM 2246]
          Length = 290

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 126/276 (45%), Gaps = 48/276 (17%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           + +G+ + VL  LPA   DL+FADPP+N+     +Y    +  D +T             
Sbjct: 9   VAEGDCVQVLNTLPAGCADLVFADPPFNIGYQYDVYDDKRAKADYLT------------- 55

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            +T  WL A  RVL P+G+L++      +      L  L   + N +VW  +  +     
Sbjct: 56  -WTEKWLAAAVRVLAPHGSLFLAIGDEFVAEHKVRLDALGLTMRNWVVWHYTFGVNC--S 112

Query: 143 RRFQNAHETLIWASPSPK-------------AKGYTFNYD-------------ALKAANE 176
           ++F  +H  +++    PK             A+  T+                 L+    
Sbjct: 113 KKFNRSHAHILYYVRDPKNHQFFPDEVRVPSARMTTYADKRANPVGKLPDDTWVLRPQES 172

Query: 177 DVQMRSD---WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
           D     D   W +P   G+   RN+ G   H  Q PEA+L R++  ++KPGD++LDPF G
Sbjct: 173 DAHFAPDSDTWHVPRICGTFHERNEAG---HKCQMPEAVLDRVIRVASKPGDLVLDPFAG 229

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           SGT+ AVAKKL R + G+E+ + Y D   KR+  ++
Sbjct: 230 SGTTLAVAKKLGRRYFGVELSEQYADGVRKRLQMIE 265


>gi|187929215|ref|YP_001899702.1| DNA methylase N-4/N-6 domain-containing protein [Ralstonia
           pickettii 12J]
 gi|187726105|gb|ACD27270.1| DNA methylase N-4/N-6 domain protein [Ralstonia pickettii 12J]
          Length = 273

 Score =  116 bits (290), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 82/260 (31%), Positives = 132/260 (50%), Gaps = 33/260 (12%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I   + I+ +E L   SVDL+ ADPPY L   G+ Y  D           DK S  +A
Sbjct: 7   DGIFNEDCITGVEHLADGSVDLVIADPPYGL---GKDYGNDS----------DKLSG-DA 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y A++  W+ A R  L  NG+L++  ++     +  ML+     ++N+I+W +  P    
Sbjct: 53  YLAWSERWIDAVRPKLARNGSLYLFCTWQYAPELFVMLKR-RLTMVNEIIWDRRVPSMGG 111

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALK----AANEDVQMRS-----DWLIPICSG 191
             R+F + H+ + + + S   + Y F+ DA++    A  +  + R       WL    + 
Sbjct: 112 STRKFSSVHDNIGFFAAS---RDYYFDVDAVRIPYDAETKKARSRKRFEGKKWLEVGYNP 168

Query: 192 SE-----RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
            +     RL  +D E+  HPTQKP  L+ R++++S  PG ++LDPF GSGT+ A   +L 
Sbjct: 169 KDVWSVSRLHRQDPERAEHPTQKPLELVERMILASCPPGGLVLDPFLGSGTTAAACARLG 228

Query: 246 RSFIGIEMKQDYIDIATKRI 265
           R F G E+  DY  +A +R+
Sbjct: 229 RRFAGFEINADYCRVARERV 248


>gi|308183850|ref|YP_003927983.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter pylori
           SJM180]
 gi|308059770|gb|ADO01666.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter pylori
           SJM180]
          Length = 232

 Score =  116 bits (290), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 109/228 (47%), Gaps = 23/228 (10%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDK-FSSFEAYDAFTRAWLLACRRVLK 97
           VD I  DPPYN+ +         +    +    WDK F   E        W+     ++ 
Sbjct: 23  VDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDKNFKLLE--------WITRYAPLVN 74

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
           PNG + +  SY  I  I   L+   F + + I W K+NPMP    RR+    E  +WA  
Sbjct: 75  PNGCIIIFCSYRFISYIADFLEENGFVVKDFIQWVKTNPMPRNIHRRYVQDTEFALWAVK 134

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
             KAK + FN    K  NE          P+ SG E+ +       HPTQK  AL+ +I+
Sbjct: 135 K-KAK-WVFN----KPKNEKYLRPLILKSPVVSGLEKTK-------HPTQKSLALMEKII 181

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
              T P DI+LDPF GSGT+G   K L R+FIGIE +++Y   A KR+
Sbjct: 182 SIHTNPNDIVLDPFMGSGTTGLACKNLERNFIGIESEKEYFQTAKKRL 229


>gi|300691105|ref|YP_003752100.1| site-specific DNA-methyltransferase (adenine-specific) [Ralstonia
           solanacearum PSI07]
 gi|299078165|emb|CBJ50808.1| Site-specific DNA-methyltransferase (adenine-specific) [Ralstonia
           solanacearum PSI07]
          Length = 270

 Score =  115 bits (289), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 84/267 (31%), Positives = 134/267 (50%), Gaps = 33/267 (12%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I   + I+ +  L   SVDL+ ADPPY L   G+ Y  D           DK S  EA
Sbjct: 7   DGIFNEDCIAGVGHLADGSVDLVIADPPYGL---GKDYGNDS----------DKLSG-EA 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y A++  W+ A    L  NG+L++  ++     +  ML+     ++N+I+W +  P    
Sbjct: 53  YMAWSERWIEAVLPKLARNGSLYLFCTWQYAPELFVMLKR-RLQMINEIIWDRRVPSMGG 111

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA--NEDVQMRS-------DWLIPICSG 191
             R+F + H+ + + + S   + Y F+ DA++     E  + RS        WL    + 
Sbjct: 112 STRKFSSVHDNIGFFAAS---RDYYFDVDAVRIPYDAETKKARSRKRFEGKKWLEVGYNP 168

Query: 192 SE-----RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
            +     RL  +D E+  HPTQKP  L+ R++++S  PG ++LDPF GSGT+     +L 
Sbjct: 169 KDVWSVSRLHRQDPERAEHPTQKPLELVERMVLASCPPGGLVLDPFLGSGTTAVACARLG 228

Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLG 272
           R F G E+  +Y  +A +R+A+V  LG
Sbjct: 229 RRFAGFEINAEYCRVARERVAAVTSLG 255


>gi|297379272|gb|ADI34159.1| Modification methylase [Helicobacter pylori v225d]
          Length = 232

 Score =  115 bits (289), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 110/229 (48%), Gaps = 23/229 (10%)

Query: 39  SVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDK-FSSFEAYDAFTRAWLLACRRVL 96
            VD I  DPPYN+ +         +    +    WDK F   E        W+     ++
Sbjct: 22  KVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDKNFRLLE--------WIKRYAPLV 73

Query: 97  KPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
            PNG + +  SY  I  I   L+   F + + I W K+NPM     RR+    E  +WA 
Sbjct: 74  NPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMQRNINRRYVQDTEFALWAV 133

Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
              KAK + FN    K  NE          P+  G ER++       HPTQK  AL+ +I
Sbjct: 134 KK-KAK-WVFN----KPENEKYLRPLILKSPVVGGLERVK-------HPTQKSLALMEKI 180

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           +   T P DI+LDPF GSGT+G   K+L R+FIGIE +++Y  IA KR+
Sbjct: 181 ISIHTNPNDIVLDPFMGSGTTGLACKRLERNFIGIESEKEYFQIAKKRL 229


>gi|206975209|ref|ZP_03236123.1| DNA methylase [Bacillus cereus H3081.97]
 gi|206746630|gb|EDZ58023.1| DNA methylase [Bacillus cereus H3081.97]
          Length = 240

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 118/249 (47%), Gaps = 24/249 (9%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV------TDSWDKFSSFEA 80
           + I  ++K+    +DLI  DPPYNL   G   R   + +  +      T  WD    F+ 
Sbjct: 10  DCIKSMKKIETNKIDLIVTDPPYNL---GNFMRNRDTNLKKMRENFFATAGWDDME-FDE 65

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           +     ++     RV+K  G++ V  +   +  + ++ +   F+     +W K+NPMP  
Sbjct: 66  WKDSMDSFFEESARVMKKGGSMIVFMAIIKVETLISLAEKHGFYYKTTGIWHKTNPMPRN 125

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
               F N+ E   W   + K +  TFN       NE           + S +E+   K  
Sbjct: 126 MNLHFVNSTEA--WVYFTYKTRTGTFN-------NEGALFHDFIETSLTSSTEKKYGK-- 174

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
              HPTQKPE+L+   +   +   D +LDPF GSGT+G V K+L R+FIG+E+ Q+Y +I
Sbjct: 175 ---HPTQKPESLIKHFVELLSNANDWVLDPFMGSGTTGVVTKRLSRNFIGVELDQEYFNI 231

Query: 261 ATKRIASVQ 269
           A  RI  ++
Sbjct: 232 AQSRIEEIE 240


>gi|15644681|ref|NP_206851.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter pylori
           26695]
 gi|2313123|gb|AAD07116.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter pylori
           26695]
          Length = 232

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 109/228 (47%), Gaps = 23/228 (10%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDK-FSSFEAYDAFTRAWLLACRRVLK 97
           VD I  DPPYN+ +         +    +    WDK F   E        W+     ++ 
Sbjct: 23  VDAIITDPPYNISVKNNFPTLKSAKRQGIDFGEWDKNFKLLE--------WIARYAPLVN 74

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
           PNG + +  SY  I  I   L+   F + + I W K+NPMP    RR+    E  +WA  
Sbjct: 75  PNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMPRNIHRRYVQDTEFALWAVK 134

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
             KAK + FN    K  NE          P+ SG E+ +       HPTQK  AL+ +I+
Sbjct: 135 K-KAK-WVFN----KPKNEKYLRPLILKSPVVSGLEKTK-------HPTQKSLALMEKII 181

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
              T P DI+LDPF GSGT+G   K L R+FIGIE +++Y   A KR+
Sbjct: 182 SIHTNPNDIVLDPFMGSGTTGLACKNLERNFIGIESEKEYFQTAKKRL 229


>gi|298737012|ref|YP_003729542.1| adenine-specific DNA-methyltransferase [Helicobacter pylori B8]
 gi|298356206|emb|CBI67078.1| adenine-specific DNA-methyltransferase [Helicobacter pylori B8]
          Length = 232

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 108/228 (47%), Gaps = 23/228 (10%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDK-FSSFEAYDAFTRAWLLACRRVLK 97
           VD I  DPPYN+ +         +    +    WDK F   E        W+     ++ 
Sbjct: 23  VDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDKNFKLLE--------WIKHYAPLVN 74

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
           PNG + +  SY  I  I   L+   F + + I W K+NPMP    RR+    E  +WA  
Sbjct: 75  PNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMPRNIHRRYVQDTEFALWAVK 134

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
             KAK + FN    K  NE          P+ SG E+ +       HPTQK  AL+ +I+
Sbjct: 135 K-KAK-WVFN----KPKNEKYLRPLILKSPVVSGLEKTK-------HPTQKSLALMEKII 181

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
              T P DI+LDPF GSGT+G   K L R FIGIE +++Y   A KR+
Sbjct: 182 SIHTNPNDIVLDPFMGSGTTGLACKNLERKFIGIESEKEYFQTAQKRL 229


>gi|330820900|ref|YP_004349762.1| DNA modification methylase [Burkholderia gladioli BSR3]
 gi|327372895|gb|AEA64250.1| DNA modification methylase [Burkholderia gladioli BSR3]
          Length = 286

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 128/249 (51%), Gaps = 33/249 (13%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           LP  S+DLI ADPPY L   G+ Y  D           DK    +A+ A+TR WL     
Sbjct: 50  LPDASIDLIVADPPYGL---GKDYGNDS----------DKLQG-DAHLAWTRQWLELAIP 95

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
            LKP+G+L+V  ++     I + L+     ++N+I+W +  P      RRF + H+ + +
Sbjct: 96  KLKPSGSLYVFCTWQYAPEIFSFLKT-RLTMINEIIWDRRVPSMGGTTRRFTSVHDNIGF 154

Query: 155 ASPSPKAKGYTFNYDAL---------KAANEDVQMRSDWLIPICSGSE-----RLRNKDG 200
            + S   KGY F+ D +         KA +  +   S WL    +  +     RL  +  
Sbjct: 155 FAVS---KGYYFDLDPVRIPYDAETKKARSRKLFEGSKWLEMGYNPKDVWSVSRLHRQHA 211

Query: 201 EKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           E++ HPTQKP  L+ R+++SS  PG ++LDPF GSGT+   + +  R FIG E+ + Y  
Sbjct: 212 ERVDHPTQKPLELVERMVLSSCPPGGVVLDPFMGSGTTAVASARHGRRFIGYEINESYCA 271

Query: 260 IATKRIASV 268
           IA +R+ ++
Sbjct: 272 IARERVTAL 280


>gi|167840376|ref|ZP_02467060.1| DNA modification methylase RsrI [Burkholderia thailandensis MSMB43]
          Length = 286

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 127/249 (51%), Gaps = 33/249 (13%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           LP  S+DLI ADPPY L   G+ Y  D           DK S  E + A+TR WL     
Sbjct: 47  LPDASIDLIVADPPYGL---GKDYGNDS----------DKRSGDE-HLAWTREWLELAIP 92

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
            LKP G+++V  ++     I + L+     ++N+I+W +  P      RRF + H+ + +
Sbjct: 93  KLKPTGSMYVFCTWQYAPEIFSFLKT-KLTMVNEIIWDRRVPSMGGTTRRFTSVHDNIGF 151

Query: 155 ASPSPKAKGYTFNYDAL---------KAANEDVQMRSDWLIPICSGSE-----RLRNKDG 200
            + S   KGY F+ D +         KA +  +   S WL    +  +     RL  +  
Sbjct: 152 FAVS---KGYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWSVSRLHRQHA 208

Query: 201 EKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     + RR F+G E+ + Y  
Sbjct: 209 ERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQRRDFVGYEINESYCA 268

Query: 260 IATKRIASV 268
           IA +R+AS+
Sbjct: 269 IARERVASL 277


>gi|291571854|dbj|BAI94126.1| type II DNA modification methyltransferase [Arthrospira platensis
           NIES-39]
          Length = 295

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/262 (32%), Positives = 138/262 (52%), Gaps = 33/262 (12%)

Query: 20  KDKIIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +  +  G++I +L  ++ A SV+LIF DPPYN+   G+ +   H          D+++S 
Sbjct: 9   RHTLFHGDAIQILSSQIAANSVNLIFVDPPYNI---GKKFSNFH----------DQWNSE 55

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           E Y  ++  WL  C RVLKPNGTL+V+ S  ++      L+     IL+ IVW   +   
Sbjct: 56  EDYINWSYQWLDECVRVLKPNGTLYVMTSTQSMPYFDIYLRQ-KMSILSRIVWHYDSSGV 114

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS--DWLIPICS--GSE- 193
             + + F + +E ++        K Y FN   +K   +    R   D+  P+ +   SE 
Sbjct: 115 QAK-KYFGSMYEPILHCVKD--QKNYIFNSADIKVEAQTGAQRKLIDYRKPVPTQYNSEK 171

Query: 194 ---------RLRNKDGE-KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
                    R+R +  E + HP QKPE+LL RI+++ST   D++LDPF G+ T+ AVAK+
Sbjct: 172 VPGNVWYFPRVRYRMAEYENHPAQKPESLLERIILASTNKHDLVLDPFAGTFTTAAVAKR 231

Query: 244 LRRSFIGIEMKQDYIDIATKRI 265
           L R  + IE +++Y+ I  +R+
Sbjct: 232 LGRFSLSIESQEEYLKIGLRRV 253


>gi|300871833|ref|YP_003786706.1| DNA methylase N-4/N-6 domain-containing protein [Brachyspira
           pilosicoli 95/1000]
 gi|300689534|gb|ADK32205.1| DNA methylase N-4/N-6 domain protein [Brachyspira pilosicoli
           95/1000]
          Length = 321

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 139/312 (44%), Gaps = 75/312 (24%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE- 79
           +K I GN+  VL+K+     DL+  DPPYN+  N   Y               KF   + 
Sbjct: 46  NKTINGNTFDVLKKIEKNITDLMIVDPPYNISKNYHGY---------------KFKDRDN 90

Query: 80  -AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            +YD +T  W+ +   +LK N T++V   + +   IG +L+   F I N I W++     
Sbjct: 91  LSYDKYTHLWVESIIPILKENATIYVCCDWKSSLVIGNVLEKY-FKIQNRITWQRE---- 145

Query: 139 NFRGR----RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ------MRSDWL--- 185
             +GR     ++N  E + +A+ S K   YTFN D +K   + +          DW+   
Sbjct: 146 --KGRGAKNNWKNGMEDIWFATLSNK---YTFNIDKVKIRRKVIAPYKIEGKPKDWIETE 200

Query: 186 -----------------IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
                            IP  S  E          HPTQKPE L+++++++S+   D + 
Sbjct: 201 NGNFRDTCPSNFWDDISIPYWSMPENT-------AHPTQKPEKLIAKLILASSNENDFVF 253

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
           DPF GSGT+  VAKKL R++ GIE    Y   A KRI S   L N E+   T        
Sbjct: 254 DPFLGSGTTSVVAKKLGRNYSGIEQNPAYCAWAEKRIESA--LQNKEIQGYTD------- 304

Query: 289 AFNLLVERGLIQ 300
             N+  ER  +Q
Sbjct: 305 --NIFWERNTMQ 314


>gi|317181350|dbj|BAJ59134.1| adenine specific DNA methyltransferase [Helicobacter pylori F57]
          Length = 232

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 111/228 (48%), Gaps = 23/228 (10%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDK-FSSFEAYDAFTRAWLLACRRVLK 97
           VD I  DPPYN+ +         +    +    WDK F   E        W+     ++ 
Sbjct: 23  VDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDKNFRLLE--------WIKRYAPLVN 74

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
           PNG + +  SY  I  I   L+   F + + I W K+NPMP    RR+    E  +WA  
Sbjct: 75  PNGCMVIFCSYRFISYIADFLEENGFIVKDFIQWVKNNPMPRNINRRYVQDTEFALWAVK 134

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
             KAK + FN    K  NE          P+ SG E+++       HPTQK  AL+ +I+
Sbjct: 135 K-KAK-WVFN----KPKNEKYLRPLILKSPVVSGLEKVK-------HPTQKSLALMEKII 181

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
              T P DI+LDPF GSGT+G   K+L R+FIGIE +++   IA +R+
Sbjct: 182 SIHTNPNDIVLDPFMGSGTTGLACKRLERNFIGIESEKECFQIAKERL 229


>gi|296142046|gb|ADG95997.1| N6-adenine methyltransferase [Helicobacter pylori]
          Length = 230

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/248 (32%), Positives = 118/248 (47%), Gaps = 26/248 (10%)

Query: 22  KIIKGNSISVLEKLPAKS--VDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDK-FSS 77
           +I   N+  +++    ++  VD I  DPPYN+ +         +    +    WDK F  
Sbjct: 2   QIYHANAFEIIKDFYQQNLKVDAIITDPPYNISVKNHFSTLKSAKRQGIDFGEWDKNFKL 61

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E        W+     ++ PNG + +  SY  I      L+   F + + I W K+NPM
Sbjct: 62  LE--------WIKRYAPLVNPNGCMVIFCSYRFI-SYADFLEENGFMVKDLIQWVKTNPM 112

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           P    RR+    E  +WA    KAK + FN    K  NE          P+  G ER++ 
Sbjct: 113 PRNIHRRYVQDTEFALWAVKK-KAK-WVFN----KPENEKYLRPLILKSPVVGGLERVK- 165

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
                 HPTQK  AL+ +I+   T P DI+LDPF GSGT+G   K L R+FIGIE++++Y
Sbjct: 166 ------HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKNLERNFIGIELEKEY 219

Query: 258 IDIATKRI 265
              A KR+
Sbjct: 220 FQTAKKRL 227


>gi|332297012|ref|YP_004438934.1| DNA methylase N-4/N-6 domain protein [Treponema brennaborense DSM
           12168]
 gi|332180115|gb|AEE15803.1| DNA methylase N-4/N-6 domain protein [Treponema brennaborense DSM
           12168]
          Length = 337

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/268 (31%), Positives = 130/268 (48%), Gaps = 46/268 (17%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQ--LNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +  G+   VL +LPA+  DL+  DPPYNL    +G  +        + TD          
Sbjct: 68  LFCGDLFDVLPRLPAEFADLLILDPPYNLDKTFDGMRF--------SATDH-------RQ 112

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y A+  +W       LKPNG+L++ G + +   +  +L+  +  ILN I+W++       
Sbjct: 113 YSAYLESWFTPLLETLKPNGSLYLCGDWKSTGSLFLLLEK-HAHILNRIIWQREKG---- 167

Query: 141 RG--RRFQNAHETLIWASPSPKAKGYTFNYDALK------AANEDVQMRSDWLIPICSGS 192
           RG  R ++N  E + +A  SP+A+ Y F+ +A+K      A   +     DW      G 
Sbjct: 168 RGALRNWKNNCEDIWFAVKSPQAE-YYFDAEAVKQKRRVIAPYRENGAPKDW-TESDGGK 225

Query: 193 ERLRNKDG--------------EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
            RL +                    HPTQKPE LL++++++S  PG ++ DPF GSGT+ 
Sbjct: 226 YRLTSAGNFWDDITVPYWSMKENTPHPTQKPEKLLAKLILASCPPGGMVFDPFAGSGTTL 285

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIA 266
             AKKL R F GIE  ++Y   A KR+A
Sbjct: 286 TAAKKLGRRFCGIERSEEYCLFARKRLA 313


>gi|241663406|ref|YP_002981766.1| DNA methylase N-4/N-6 domain-containing protein [Ralstonia
           pickettii 12D]
 gi|240865433|gb|ACS63094.1| DNA methylase N-4/N-6 domain protein [Ralstonia pickettii 12D]
          Length = 273

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/259 (32%), Positives = 131/259 (50%), Gaps = 33/259 (12%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I   + I+ +  L   SVDL+ ADPPY L   G+ Y  D           DK S  +A
Sbjct: 7   DGIFNEDCITGVGHLADGSVDLVIADPPYGL---GKDYGNDS----------DKLSG-DA 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y A++  W+ A R  L  NG+L++  ++     +  ML+     ++N+I+W +  P    
Sbjct: 53  YLAWSERWIDAVRPKLARNGSLYLFCTWQYAPELFVMLKQ-RLTMVNEIIWDRRVPSMGG 111

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA--NEDVQMRS-------DWLIPICSG 191
             R+F + H+ + + + S   + Y F+ DA++     E  + RS        WL    + 
Sbjct: 112 STRKFSSVHDNIGFFAAS---RDYYFDVDAVRIPYDAETKKARSRKRFEGKKWLEVGYNP 168

Query: 192 SE-----RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
            +     RL  +D E+  HPTQKP  L+ R++++S  PG ++LDPF GSGT+ AV  +L 
Sbjct: 169 KDVWSVSRLHRQDPERAEHPTQKPLELVERMILASCPPGGLVLDPFLGSGTTAAVCARLG 228

Query: 246 RSFIGIEMKQDYIDIATKR 264
           R F G E+  DY  +A +R
Sbjct: 229 RRFAGFEINADYCRVARER 247


>gi|311221492|gb|ADP76553.1| DNA methyltransferase [Helicobacter pylori]
          Length = 587

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 108/228 (47%), Gaps = 23/228 (10%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDK-FSSFEAYDAFTRAWLLACRRVLK 97
           VD I  DPPYN+ +         +    +    WDK F   E        W+     ++ 
Sbjct: 378 VDAIITDPPYNISVKNNFPTLKSAKRQGIDFGEWDKNFKLLE--------WIARYAPLVN 429

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
           PNG + +  SY  I  I   L+   F + + I W K+NPMP    RR+    E  +WA  
Sbjct: 430 PNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMPRNIHRRYVQDTEFALWAVK 489

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
             KAK + FN    K  NE           + SG E+ +       HPTQK  AL+ +I+
Sbjct: 490 K-KAK-WVFN----KPKNEKYLRPLILKSTVVSGLEKTK-------HPTQKSLALMEKII 536

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
              T P DI+LDPF GSGT+G   K L R+FIGIE +++Y   A KR+
Sbjct: 537 SIHTNPNDIVLDPFMGSGTTGLACKNLERNFIGIESEKEYFQTAKKRL 584


>gi|309783469|ref|ZP_07678172.1| DNA (cytosine-5-)-methyltransferase [Ralstonia sp. 5_7_47FAA]
 gi|308917755|gb|EFP63449.1| DNA (cytosine-5-)-methyltransferase [Ralstonia sp. 5_7_47FAA]
          Length = 273

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/260 (31%), Positives = 131/260 (50%), Gaps = 33/260 (12%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I   + I+ +  L   SVDL+ ADPPY L   G+ Y  D           DK S  +A
Sbjct: 7   DGIFNEDCITGVGHLADGSVDLVIADPPYGL---GKDYGNDS----------DKLSG-DA 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y A++  W+ A R  L  NG+L++  ++     +  ML+     ++N+I+W +  P    
Sbjct: 53  YLAWSERWIDAVRPKLARNGSLYLFCTWQYAPELFVMLKQ-RLTMVNEIIWDRRVPSMGG 111

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA--NEDVQMRS-------DWLIPICSG 191
             R+F + H+ + + + S   + Y F+ DA++     E  + RS        WL    + 
Sbjct: 112 STRKFSSVHDNIGFFAAS---RDYYFDVDAVRIPYDAETKKARSRKRFEGKKWLEVGYNP 168

Query: 192 SE-----RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
            +     RL  +D E+  HPTQKP  L+ R++++S  PG ++LDPF GSGT+ A   +L 
Sbjct: 169 KDVWSVSRLHRQDPERAEHPTQKPLELVERMILASCPPGGLVLDPFLGSGTTAAACARLG 228

Query: 246 RSFIGIEMKQDYIDIATKRI 265
           R F G E+  DY  +A +R+
Sbjct: 229 RRFAGFEINADYCRVARERV 248


>gi|284052959|ref|ZP_06383169.1| putative methyltransferase [Arthrospira platensis str. Paraca]
          Length = 295

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/262 (32%), Positives = 138/262 (52%), Gaps = 33/262 (12%)

Query: 20  KDKIIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +  +  G++I +L  ++ A SV+LIF DPPYN+   G+ +   H          D+++S 
Sbjct: 9   RHTLFHGDAIQILSSQIAANSVNLIFVDPPYNI---GKKFSNFH----------DQWNSE 55

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           E Y  ++  WL  C RVLKPNGTL+V+ S  ++      L+     IL+ IVW   +   
Sbjct: 56  EDYINWSYQWLDECVRVLKPNGTLYVMTSTQSMPYFDIYLRQ-KMSILSRIVWHYDSSGV 114

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS--DWLIPICS--GSE- 193
             + + F + +E ++        K Y FN   +K   +    R   D+  P+ +   SE 
Sbjct: 115 QAK-KYFGSMYEPILHCVKD--RKNYIFNSADIKVEAKTGAQRKLIDYRKPVPTQYNSEK 171

Query: 194 ---------RLRNKDGE-KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
                    R+R +  E + HP QKPE+LL RI+++ST   D++LDPF G+ T+ AVAK+
Sbjct: 172 VPGNVWYFPRVRYRMAEYENHPAQKPESLLERIILASTNKHDLVLDPFAGTFTTAAVAKR 231

Query: 244 LRRSFIGIEMKQDYIDIATKRI 265
           L R  + IE +++Y+ I  +R+
Sbjct: 232 LGRFSLSIESQEEYLKIGLRRV 253


>gi|224418258|ref|ZP_03656264.1| cytosine specific DNA methyltransferase (DDEM) [Helicobacter
           canadensis MIT 98-5491]
 gi|253827583|ref|ZP_04870468.1| putative methylase [Helicobacter canadensis MIT 98-5491]
 gi|313141791|ref|ZP_07803984.1| cytosine-specific DNA methyltransferase [Helicobacter canadensis
           MIT 98-5491]
 gi|253510989|gb|EES89648.1| putative methylase [Helicobacter canadensis MIT 98-5491]
 gi|313130822|gb|EFR48439.1| cytosine-specific DNA methyltransferase [Helicobacter canadensis
           MIT 98-5491]
          Length = 589

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 120/248 (48%), Gaps = 24/248 (9%)

Query: 23  IIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDKFSSFE 79
           I   +S S++E    +   V+ I  DPPYN+  +      + +    +    WDK     
Sbjct: 361 IYNSDSYSMIETFIKQGLKVNHIITDPPYNISQDNNFSTMNSAKRQGIDFGEWDK----- 415

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            +D F   W+ +  ++L  NG+  +  SY  +  I   L+N +  + + ++W+KSNPMP 
Sbjct: 416 KFDLFN--WIKSYSKILDINGSFIIFCSYRFVSHICDTLENSDCVVKDILIWQKSNPMPR 473

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
              RR+    E  +WA    K   + FN       N    +R+ +  P+  G ER     
Sbjct: 474 NISRRYVQDMEFAVWAVK--KGAKWVFN-----KPNNKKYLRAMYTAPVVRGFERTE--- 523

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
               HPTQK   ++  I+   T   D++LDPF GSG++G  A    R+F+GIE+ + Y +
Sbjct: 524 ----HPTQKSLKVMQEIIQIHTNKDDLVLDPFMGSGSTGVAAICNGRNFLGIELSKKYYN 579

Query: 260 IATKRIAS 267
           IA KR++S
Sbjct: 580 IALKRLSS 587


>gi|225621478|ref|YP_002722737.1| DNA methylase N-4/N-6 domain-containing protein [Brachyspira
           hyodysenteriae WA1]
 gi|225216299|gb|ACN85033.1| DNA methylase N-4/N-6 domain protein [Brachyspira hyodysenteriae
           WA1]
          Length = 324

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/281 (30%), Positives = 129/281 (45%), Gaps = 64/281 (22%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE- 79
           +K I GN+  VL+K+     DL+  DPPYN+  N   Y               KF   + 
Sbjct: 46  NKTINGNTFDVLKKIEKNISDLMIVDPPYNISKNYHGY---------------KFKDIDN 90

Query: 80  -AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            +Y+ +T  W+ +   +LK   +++V   + +   IG +L+   F I N I W++     
Sbjct: 91  LSYEKYTHLWVESIIPILKKEASIYVCCDWKSSLVIGNVLEKY-FNIQNRITWQRE---- 145

Query: 139 NFRGR----RFQNAHETLIWASPSPKAKGYTFNYDALK------------------AANE 176
             +GR     ++N  E + +A+ S K   YTFN D +K                     E
Sbjct: 146 --KGRGAKNNWKNGMEDIWFATVSNK---YTFNVDDVKIRRKVIAPYRIEGKPKDWTETE 200

Query: 177 DVQMRS--------DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
           D   R         D  +P  S SE          HPTQKPE L+++++++S+   D I 
Sbjct: 201 DGNFRDTCPSNFWDDISVPYWSMSENT-------AHPTQKPEKLIAKLILASSNANDFIF 253

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           DPF GSGT+  VAKKL R++ GIE  + Y   A KRI + +
Sbjct: 254 DPFLGSGTTSVVAKKLGRNYSGIEQHKTYCAWAEKRIENAE 294


>gi|118576552|ref|YP_876295.1| DNA modification methylase [Cenarchaeum symbiosum A]
 gi|118195073|gb|ABK77991.1| DNA modification methylase [Cenarchaeum symbiosum A]
          Length = 264

 Score =  112 bits (281), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 125/252 (49%), Gaps = 19/252 (7%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA-VTDSWDKFSSF 78
           +D+I  G+ I  +  +   SVDLI  DPP+ +    +  R +++  +  V D +++ +  
Sbjct: 17  RDRIFHGDCIEGMAAMKESSVDLIVTDPPFAIGFGAR--RANYNRKEGNVMDGYNEITPA 74

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           E Y  FT  W+    RVLK  G+++V   + N+  I   +    F  +N I+WR    + 
Sbjct: 75  E-YPGFTGRWMAGAHRVLKETGSMFVFSGWTNLQDILRAIDETGFKTINHIIWRYQFGV- 132

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
            +  RRF ++H   ++   + K + +          +    M   W+I          N+
Sbjct: 133 -YTKRRFVSSHYHCLYVCKNDKKRRFYTESRHSDTKSRYRDMEDVWVI----------NR 181

Query: 199 D---GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +   G+K  PT+ P  L+ +IL  S++ GD+++DPF GSG    V+K++ R + G E+ +
Sbjct: 182 EYWSGKKKTPTKLPGELIRKILQYSSREGDLVMDPFLGSGQVAVVSKEMGRRYAGFEIVR 241

Query: 256 DYIDIATKRIAS 267
           +Y D A +R+ +
Sbjct: 242 EYYDFALERLGA 253


>gi|261837549|gb|ACX97315.1| adenine-methyltransferase [Helicobacter pylori 51]
          Length = 165

 Score =  112 bits (281), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 66/151 (43%), Positives = 91/151 (60%), Gaps = 6/151 (3%)

Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
           +G +LQ L+F ILN I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK 
Sbjct: 1   MGRILQKLDFKILNLITWQKTNPPPNFSCRYLTHSAEQIIWARKSRKHK-HVFNYEVLKK 59

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
            N D QMR  W  P  +  E+   K     HPTQKP ALL R+L+ ++    +I DPF G
Sbjct: 60  INNDKQMRDVWSFPAIAPWEKTNGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSG 114

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           S T+G  A  L+R FIGIE + +++ ++  R
Sbjct: 115 SSTTGIAANLLKRQFIGIEKESEFVKMSMDR 145


>gi|238027668|ref|YP_002911899.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           glumae BGR1]
 gi|237876862|gb|ACR29195.1| DNA methylase N-4/N-6 domain protein [Burkholderia glumae BGR1]
          Length = 250

 Score =  112 bits (281), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 113/264 (42%), Gaps = 42/264 (15%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           +W D+   G+   +L  +PA   D + ADPPY           D SL       WD+   
Sbjct: 3   DWLDRCHFGDCRELLPMIPAGVADAVIADPPYG----------DTSL------KWDRVVD 46

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
                     W+ AC R LKP G++WV GS   I     +++   F    DIVWRK N  
Sbjct: 47  ---------GWIDACARTLKPAGSIWVFGSLRFIAPTFELMERAGFRYSQDIVWRKQNGT 97

Query: 138 PNFRGRRFQNAHETLIW---ASPSPKAKGYTFNYDALKAANEDVQMRSDW------LIPI 188
             F   RF+  HE  +     + S   K     +DA K         + W          
Sbjct: 98  -GFHNDRFRRVHEHAVLFYRGAWSDVYKCPQVTHDARKKQVRRKTRAAHWGDIDRGHYTS 156

Query: 189 CSGSERLR-------NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
             G  RLR       N+ G  LHPTQKP  L+  ++  S  PG I+LDPF GSG++   A
Sbjct: 157 VDGGPRLRTSVIDMRNEHGHALHPTQKPVDLIELMVRYSVPPGGIVLDPFLGSGSTALAA 216

Query: 242 KKLRRSFIGIEMKQDYIDIATKRI 265
            +  R +IG E+  D  D+  +R+
Sbjct: 217 IRNGRHWIGCELDPDCRDMQAQRL 240


>gi|221369876|ref|YP_002520972.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sphaeroides
           KD131]
 gi|221162928|gb|ACM03899.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sphaeroides
           KD131]
          Length = 253

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 118/264 (44%), Gaps = 48/264 (18%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I+ G+ ++ +  LP  SVD +  DPPY     GQ   P           WD+F       
Sbjct: 7   ILPGDCLASMRTLPNCSVDAVVTDPPY-----GQTSLP-----------WDRF------- 43

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL-NDIVWRKSNPMPNFR 141
                W+    R+LKP G++WV G+     +     +  + W L  DIVW K N   +F 
Sbjct: 44  --VYGWMAEIGRILKPTGSVWVFGTLRTFTQ---HWREFDGWTLAQDIVWEKHN-GSSFH 97

Query: 142 GRRFQNAHETLI------WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC----SG 191
             RF+  HE         WAS   K K  T +  A     +   +   W+         G
Sbjct: 98  ADRFRRVHEQAAHFYRGDWASVY-KGKVVTMDATAKSVRRKTPPVHMGWIDHGSYVSEDG 156

Query: 192 SERL-------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
             RL       R++ G   HPTQKP A++  +++++  PG ++LDPF GSGT+G VA +L
Sbjct: 157 GPRLMRSVIYSRSEHGRAQHPTQKPAAIIEPLILNACPPGGVVLDPFAGSGTTGGVAARL 216

Query: 245 RRSFIGIEMKQDYIDIATKRIASV 268
            R  I  E   DY+ +  +RI  +
Sbjct: 217 GRKAILCEGNTDYLSVMERRIGGI 240


>gi|167820636|ref|ZP_02452316.1| DNA modification methylase RsrI [Burkholderia pseudomallei 91]
          Length = 281

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/249 (33%), Positives = 127/249 (51%), Gaps = 34/249 (13%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           LP  S+DLI ADPPY L   G+ Y  D           DK S  E + A+TR WL     
Sbjct: 43  LPDASIDLIVADPPYGL---GKDYGNDS----------DKRSGDE-HLAWTREWLELAVP 88

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
            LK  G+++V  ++     I + L+     ++N+I+W +  P      RRF + H+ + +
Sbjct: 89  KLKSTGSMYVFCTWQYAPEIFSFLKT-KLTMVNEIIWDRRVPSMGGTTRRFTSVHDNIGF 147

Query: 155 ASPSPKAKGYTFNYDAL---------KAANEDVQMRSDWL-----IPICSGSERLRNKDG 200
            + S   KGY F+ D +         KA +  +   S WL       + S S RL  +  
Sbjct: 148 FAVS---KGYYFDLDPVRIPYDADTKKARSRKLFEGSKWLELGYNQDVWSVS-RLHRQHA 203

Query: 201 EKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     + RR F+G E+ + Y  
Sbjct: 204 ERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQRRGFVGYEINESYCA 263

Query: 260 IATKRIASV 268
           IA +R+AS+
Sbjct: 264 IARERVASL 272


>gi|186684880|ref|YP_001868076.1| DNA methylase N-4/N-6 domain-containing protein [Nostoc punctiforme
           PCC 73102]
 gi|186467332|gb|ACC83133.1| DNA methylase N-4/N-6 domain protein [Nostoc punctiforme PCC 73102]
          Length = 369

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/273 (28%), Positives = 129/273 (47%), Gaps = 55/273 (20%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+I+  +S+ +L  LP + VDL+ + PPYNL   G+ Y    +L              E 
Sbjct: 11  DQILLEDSLQLLRNLPDQCVDLVVSSPPYNL---GKEYESRQAL--------------EI 53

Query: 81  YDAFTRAWLLACRRVLKPNGTL-WVIGSYHNI-------FRIGTMLQNLNFWILNDIVWR 132
           Y     A LL C R+LK  G+L W +G++ +         R   +L++      N I+W 
Sbjct: 54  YLKEQTAVLLECSRILKNTGSLFWQVGAFSDRGMLIPLDIRFFPILESCRLIPRNRIIWA 113

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK-------------------A 173
           + + +     ++F   HET++W +   K+  Y FN D ++                   +
Sbjct: 114 RQHGL--HAQKKFSCRHETILWFT---KSDNYKFNLDPIRVPQKYQNKKHYRGNRKGELS 168

Query: 174 ANEDVQMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
            N + +   D WL           N + + +HP Q PE L++RI++++T   DI+LDPF 
Sbjct: 169 CNPEGKNPGDIWLFRNVK-----HNHEEQTIHPCQFPEDLVTRIILATTNKNDIVLDPFM 223

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           GSGT   VA+   R FIG E++  Y  +A +R+
Sbjct: 224 GSGTVAVVARDSERHFIGSEIEPKYYQVALRRL 256


>gi|20663549|pdb|1G60|A Chain A, Crystal Structure Of Methyltransferase Mboiia (Moraxella
           Bovis)
 gi|20663550|pdb|1G60|B Chain B, Crystal Structure Of Methyltransferase Mboiia (Moraxella
           Bovis)
          Length = 260

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 121/266 (45%), Gaps = 45/266 (16%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI + N    L+++  KSV L   DPPYNL                    WD F S   
Sbjct: 5   NKIHQMNCFDFLDQVENKSVQLAVIDPPYNLS----------------KADWDSFDSHNE 48

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           + AFT  W+      L  +G+L++  +  N   I   L +      N I W K + M + 
Sbjct: 49  FLAFTYRWIDKVLDKLDKDGSLYIFNTPFNCAFICQYLVSKGMIFQNWITWDKRDGMGSA 108

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---VQMRSD-------------- 183
           + RRF    ET+++ S   K+K +TFNYD ++   E    ++  S+              
Sbjct: 109 K-RRFSTGQETILFFS---KSKNHTFNYDEVRVPYESTDRIKHASEKGILKNGKRWFPNP 164

Query: 184 --------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
                   W        E++  K  +  H T KP  L+ RI+ +S+ P D++LD F GSG
Sbjct: 165 NGRLCGEVWHFSSQRHKEKVNGKTVKLTHITPKPRDLIERIIRASSNPNDLVLDCFMGSG 224

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIA 261
           T+  VAKKL R+FIG +M  +Y++ A
Sbjct: 225 TTAIVAKKLGRNFIGCDMNAEYVNQA 250


>gi|332981877|ref|YP_004463318.1| DNA methylase N-4/N-6 domain-containing protein [Mahella
           australiensis 50-1 BON]
 gi|332699555|gb|AEE96496.1| DNA methylase N-4/N-6 domain protein [Mahella australiensis 50-1
           BON]
          Length = 314

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/285 (30%), Positives = 135/285 (47%), Gaps = 61/285 (21%)

Query: 15  SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ--LNGQLYRPDHSLVDAVTDSW 72
           S+ +  D+ I  +  S    LP + V+L+F DPPYN+    NG  +              
Sbjct: 37  SVSDITDRTINQDIFSAARFLPQQFVNLLFVDPPYNMSKTFNGNTFNK------------ 84

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
               S + Y  +  +WL      LKP  +L++ G + +   I  ++    F I N I W 
Sbjct: 85  ---MSMDQYTQWLESWLTLLIPALKPIASLYICGDWRSSAAIFEVMSKY-FIIRNRITWE 140

Query: 133 KSNPMPNFRGRR--FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           +       RG +  ++NA E + + + S K   YTFN        E+V+++     P   
Sbjct: 141 REKG----RGSKTNWKNASEDIWFCTVSNK---YTFN-------AENVKLKRLVKAPYKD 186

Query: 191 GSERLRN-----KDGEKL----------------------HPTQKPEALLSRILVSSTKP 223
           GS + ++     K+  +L                      HPTQKPE LL++I+++S+ P
Sbjct: 187 GSGQPKDWHYDGKNKYRLTYPSNIWTDITVPFWSMPENTHHPTQKPEKLLAKIILASSNP 246

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           GDIILDPF GSGT+  VAKKL R ++GIE+   Y  +A KR+A+ 
Sbjct: 247 GDIILDPFLGSGTTSVVAKKLGRRYVGIEIDNTYCCLAEKRLAAA 291


>gi|87042330|gb|ABD16204.1| M1.NcuI methyltransferase [Moraxella cuniculi]
          Length = 259

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 119/266 (44%), Gaps = 45/266 (16%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   N    LEK+  KS+ L   DPPYNL                    WD F     
Sbjct: 4   NKIYHMNCFDFLEKIQNKSIQLAVIDPPYNLN----------------KADWDSFDDHNE 47

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           + AFT  W+      L  NG++++  +  N   I   L +      N I W K + M + 
Sbjct: 48  FLAFTYRWIDKVLDKLDKNGSIYIFNTPFNCAFICQYLVSKGMIFQNWITWDKRDGMGSA 107

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---VQMRSD-------------- 183
           + RRF    ET+++ S   K+K +TFNYD ++   E    ++  S+              
Sbjct: 108 K-RRFSTGQETILFFS---KSKNHTFNYDEVRVPYESTDRIKHASEKGILKNGQRWFPNP 163

Query: 184 --------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
                   W        E++  K  +  H T KP  L+ RI+ +S+ P D++LD F GSG
Sbjct: 164 NGRLCGEVWHFSSQRHKEKVNGKTVKLSHITPKPHDLIERIIKASSNPNDLVLDCFMGSG 223

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIA 261
           T+  VAKKL R+FIG ++  +Y++ A
Sbjct: 224 TTAIVAKKLGRNFIGCDINTEYVEQA 249


>gi|53716177|ref|YP_106283.1| N-6 adenine-specific DNA methylase [Burkholderia mallei ATCC 23344]
 gi|53722718|ref|YP_111703.1| modification methylase [Burkholderia pseudomallei K96243]
 gi|67640710|ref|ZP_00439507.1| DNA modification methylase RsrI [Burkholderia mallei GB8 horse 4]
 gi|121596899|ref|YP_991244.1| N-6 adenine-specific DNA methylase [Burkholderia mallei SAVP1]
 gi|124382898|ref|YP_001025656.1| N-6 adenine-specific DNA methylase [Burkholderia mallei NCTC 10229]
 gi|126445073|ref|YP_001063438.1| DNA modification methylase RsrI [Burkholderia pseudomallei 668]
 gi|126446610|ref|YP_001077731.1| DNA modification methylase RsrI [Burkholderia mallei NCTC 10247]
 gi|126458257|ref|YP_001076339.1| DNA modification methylase RsrI [Burkholderia pseudomallei 1106a]
 gi|134278482|ref|ZP_01765196.1| DNA modification methylase RsrI [Burkholderia pseudomallei 305]
 gi|166999488|ref|ZP_02265327.1| DNA modification methylase RsrI [Burkholderia mallei PRL-20]
 gi|167828995|ref|ZP_02460466.1| DNA modification methylase RsrI [Burkholderia pseudomallei 9]
 gi|167850471|ref|ZP_02475979.1| DNA modification methylase RsrI [Burkholderia pseudomallei B7210]
 gi|167899065|ref|ZP_02486466.1| DNA modification methylase RsrI [Burkholderia pseudomallei 7894]
 gi|167915749|ref|ZP_02502840.1| DNA modification methylase RsrI [Burkholderia pseudomallei 112]
 gi|167923589|ref|ZP_02510680.1| DNA modification methylase RsrI [Burkholderia pseudomallei BCC215]
 gi|217422579|ref|ZP_03454082.1| DNA modification methylase RsrI [Burkholderia pseudomallei 576]
 gi|226195794|ref|ZP_03791381.1| DNA modification methylase RsrI [Burkholderia pseudomallei Pakistan
           9]
 gi|237508464|ref|ZP_04521179.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei
           MSHR346]
 gi|242312128|ref|ZP_04811145.1| DNA modification methylase RsrI [Burkholderia pseudomallei 1106b]
 gi|254176235|ref|ZP_04882893.1| DNA modification methylase RsrI [Burkholderia mallei ATCC 10399]
 gi|254186233|ref|ZP_04892751.1| DNA modification methylase RsrI [Burkholderia pseudomallei Pasteur
           52237]
 gi|254193634|ref|ZP_04900066.1| DNA modification methylase RsrI [Burkholderia pseudomallei S13]
 gi|254201165|ref|ZP_04907530.1| DNA modification methylase RsrI [Burkholderia mallei FMH]
 gi|254205137|ref|ZP_04911490.1| DNA modification methylase RsrI [Burkholderia mallei JHU]
 gi|254265092|ref|ZP_04955957.1| DNA modification methylase RsrI [Burkholderia pseudomallei 1710a]
 gi|254301281|ref|ZP_04968725.1| DNA modification methylase RsrI [Burkholderia pseudomallei 406e]
 gi|254359264|ref|ZP_04975536.1| DNA modification methylase RsrI [Burkholderia mallei 2002721280]
 gi|52213132|emb|CAH39171.1| putative modification methylase [Burkholderia pseudomallei K96243]
 gi|52422147|gb|AAU45717.1| N-6 adenine-specific DNA methylase [Burkholderia mallei ATCC 23344]
 gi|121224697|gb|ABM48228.1| N-6 adenine-specific DNA methylase [Burkholderia mallei SAVP1]
 gi|126224564|gb|ABN88069.1| DNA modification methylase RsrI [Burkholderia pseudomallei 668]
 gi|126232025|gb|ABN95438.1| DNA modification methylase RsrI [Burkholderia pseudomallei 1106a]
 gi|126239464|gb|ABO02576.1| DNA modification methylase RsrI [Burkholderia mallei NCTC 10247]
 gi|134250266|gb|EBA50346.1| DNA modification methylase RsrI [Burkholderia pseudomallei 305]
 gi|147748777|gb|EDK55852.1| DNA modification methylase RsrI [Burkholderia mallei FMH]
 gi|147754723|gb|EDK61787.1| DNA modification methylase RsrI [Burkholderia mallei JHU]
 gi|148028451|gb|EDK86411.1| DNA modification methylase RsrI [Burkholderia mallei 2002721280]
 gi|157811304|gb|EDO88474.1| DNA modification methylase RsrI [Burkholderia pseudomallei 406e]
 gi|157933919|gb|EDO89589.1| DNA modification methylase RsrI [Burkholderia pseudomallei Pasteur
           52237]
 gi|160697277|gb|EDP87247.1| DNA modification methylase RsrI [Burkholderia mallei ATCC 10399]
 gi|169650385|gb|EDS83078.1| DNA modification methylase RsrI [Burkholderia pseudomallei S13]
 gi|217394810|gb|EEC34829.1| DNA modification methylase RsrI [Burkholderia pseudomallei 576]
 gi|225932279|gb|EEH28279.1| DNA modification methylase RsrI [Burkholderia pseudomallei Pakistan
           9]
 gi|235000669|gb|EEP50093.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei
           MSHR346]
 gi|238521481|gb|EEP84932.1| DNA modification methylase RsrI [Burkholderia mallei GB8 horse 4]
 gi|242135367|gb|EES21770.1| DNA modification methylase RsrI [Burkholderia pseudomallei 1106b]
 gi|243064538|gb|EES46724.1| DNA modification methylase RsrI [Burkholderia mallei PRL-20]
 gi|254216094|gb|EET05479.1| DNA modification methylase RsrI [Burkholderia pseudomallei 1710a]
 gi|261827031|gb|ABM99404.2| DNA modification methylase RsrI [Burkholderia mallei NCTC 10229]
          Length = 282

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/249 (32%), Positives = 126/249 (50%), Gaps = 33/249 (13%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           LP  S+DLI ADPPY L   G+ Y  D           DK S  E + A+TR WL     
Sbjct: 43  LPDASIDLIVADPPYGL---GKDYGNDS----------DKRSGDE-HLAWTREWLELAVP 88

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
            LK  G+++V  ++     I + L+     ++N+I+W +  P      RRF + H+ + +
Sbjct: 89  KLKSTGSMYVFCTWQYAPEIFSFLKT-KLTMVNEIIWDRRVPSMGGTTRRFTSVHDNIGF 147

Query: 155 ASPSPKAKGYTFNYDAL---------KAANEDVQMRSDWLIPICSGSE-----RLRNKDG 200
            + S   KGY F+ D +         KA +  +   S WL    +  +     RL  +  
Sbjct: 148 FAVS---KGYYFDLDPVRIPYDADTKKARSRKLFEGSKWLELGYNPKDVWSVSRLHRQHA 204

Query: 201 EKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     + RR F+G E+ + Y  
Sbjct: 205 ERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQRRGFVGYEINESYCA 264

Query: 260 IATKRIASV 268
           IA +R+AS+
Sbjct: 265 IARERVASL 273


>gi|76819441|ref|YP_335927.1| DNA methylase [Burkholderia pseudomallei 1710b]
 gi|76583914|gb|ABA53388.1| DNA methylase [Burkholderia pseudomallei 1710b]
          Length = 258

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/249 (32%), Positives = 126/249 (50%), Gaps = 33/249 (13%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           LP  S+DLI ADPPY L   G+ Y  D           DK S  E + A+TR WL     
Sbjct: 19  LPDASIDLIVADPPYGL---GKDYGNDS----------DKRSGDE-HLAWTREWLELAVP 64

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
            LK  G+++V  ++     I + L+     ++N+I+W +  P      RRF + H+ + +
Sbjct: 65  KLKSTGSMYVFCTWQYAPEIFSFLKT-KLTMVNEIIWDRRVPSMGGTTRRFTSVHDNIGF 123

Query: 155 ASPSPKAKGYTFNYDAL---------KAANEDVQMRSDWLIPICSGSE-----RLRNKDG 200
            + S   KGY F+ D +         KA +  +   S WL    +  +     RL  +  
Sbjct: 124 FAVS---KGYYFDLDPVRIPYDADTKKARSRKLFEGSKWLELGYNPKDVWSVSRLHRQHA 180

Query: 201 EKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     + RR F+G E+ + Y  
Sbjct: 181 ERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQRRGFVGYEINESYCA 240

Query: 260 IATKRIASV 268
           IA +R+AS+
Sbjct: 241 IARERVASL 249


>gi|257088375|ref|ZP_05582736.1| DNA-methyltransferase [Enterococcus faecalis D6]
 gi|256996405|gb|EEU83707.1| DNA-methyltransferase [Enterococcus faecalis D6]
 gi|315026485|gb|EFT38417.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX2137]
          Length = 246

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/265 (31%), Positives = 128/265 (48%), Gaps = 43/265 (16%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +II  +    L ++  +SVDLIF DPPYNL+          S  D ++DSW    S + Y
Sbjct: 3   RIINKDVFKGLNEVKEESVDLIFIDPPYNLK---------KSYADGISDSW---ISDKEY 50

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +   WL      LKPNG+L+++ +  N+  I   L++   +I + IVW   +     +
Sbjct: 51  MDWVEKWLEITISKLKPNGSLYIMNTTQNMPFIDIYLRD-KLYIQSRIVWHYDSSGVQAK 109

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAA--------------------NEDVQMR 181
            R + + +E +++ +   K  GYTFN  A++                      NE     
Sbjct: 110 -RYYGSLYEPILFCTK--KRSGYTFNGSAIEVKTRTGSERKLIDYRKNPPQQYNETKVPG 166

Query: 182 SDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           + W  P      R+R K  E + HP+QKP +LL RI+++S+  GD ILD F GS   G V
Sbjct: 167 NVWYFP------RVRFKMKEYVKHPSQKPISLLKRIVLASSNEGDTILDVFAGSFALGEV 220

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRI 265
            K   R +IGIEM + Y +I   R+
Sbjct: 221 CKNYSRDYIGIEMSKTYCEIGKNRL 245


>gi|23428395|gb|AAL15431.1| DNA methyltransferase B [Moraxella nonliquefaciens]
 gi|52788778|gb|AAU87369.1| MnlI m6A-methyltransferase [Moraxella nonliquefaciens]
          Length = 239

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 120/248 (48%), Gaps = 22/248 (8%)

Query: 20  KDKIIKGNSISVLEKLPAKSV--DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           K KI   N ++  ++L    +  + I  DPPY +      +  ++         WD    
Sbjct: 10  KIKIFHDNCLNTFKQLKNDKILINHIITDPPYAISSENNFHTMNNPRKGVDFGEWD---- 65

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
              +D     WL     +L  NG++ +  SY  I +I   +++L   + + ++W+K NPM
Sbjct: 66  ---WDFNPCLWLDDAYPLLDKNGSMVIFCSYRFISQIIHKIEHLGGVVKDVMIWQKQNPM 122

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           P    RR+    E +IWA  +  +K + FN    K AN+  Q R  +  P   G ER + 
Sbjct: 123 PRNINRRYVQDMEFIIWALKNKNSK-WVFN----KPANKPYQ-RGFFQTPTLLGKERTK- 175

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
                 HPTQKP AL+S I+   T   +IILDPF G G++G   + L R FIGIE  + +
Sbjct: 176 ------HPTQKPLALMSEIIQIHTNENEIILDPFMGVGSTGVACQGLNRYFIGIEQDKAW 229

Query: 258 IDIATKRI 265
            DIA +R+
Sbjct: 230 FDIAGQRL 237


>gi|167621342|ref|ZP_02389973.1| DNA modification methylase RsrI [Burkholderia thailandensis Bt4]
 gi|257141965|ref|ZP_05590227.1| DNA modification methylase RsrI [Burkholderia thailandensis E264]
          Length = 285

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/249 (32%), Positives = 126/249 (50%), Gaps = 33/249 (13%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           LP  S+DLI ADPPY L   G+ Y  D           DK S  E + A+TR WL     
Sbjct: 46  LPDASIDLIVADPPYGL---GKDYGNDS----------DKRSGDE-HLAWTREWLELAIP 91

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
            LK  G+++V  ++     I + L+     ++N+I+W +  P      RRF + H+ + +
Sbjct: 92  KLKSTGSMYVFCTWQYAPEIFSFLKT-RLTMINEIIWDRRVPSMGGTTRRFTSVHDNIGF 150

Query: 155 ASPSPKAKGYTFNYDAL---------KAANEDVQMRSDWLIPICSGSE-----RLRNKDG 200
            + S   KGY F+ D +         KA +  +   S WL    +  +     RL  +  
Sbjct: 151 FAVS---KGYYFDLDPVRIPYDADTKKARSRKLFEGSKWLELGYNPKDVWSVSRLHRQHA 207

Query: 201 EKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     + RR F+G E+ + Y  
Sbjct: 208 ERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQRRDFVGYEINESYCA 267

Query: 260 IATKRIASV 268
           IA +R+AS+
Sbjct: 268 IARERVASL 276


>gi|167577250|ref|ZP_02370124.1| DNA modification methylase RsrI [Burkholderia thailandensis TXDOH]
          Length = 285

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/249 (32%), Positives = 126/249 (50%), Gaps = 33/249 (13%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           LP  S+DLI ADPPY L   G+ Y  D           DK S  E + A+TR WL     
Sbjct: 46  LPDASIDLIVADPPYGL---GKDYGNDS----------DKRSGDE-HLAWTREWLELAIP 91

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
            LK  G+++V  ++     I + L+     ++N+I+W +  P      RRF + H+ + +
Sbjct: 92  KLKSTGSMYVFCTWQYAPEIFSFLKT-RLTMINEIIWDRRVPSMGGTTRRFTSVHDNIGF 150

Query: 155 ASPSPKAKGYTFNYDAL---------KAANEDVQMRSDWLIPICSGSE-----RLRNKDG 200
            + S   KGY F+ D +         KA +  +   S WL    +  +     RL  +  
Sbjct: 151 FAVS---KGYYFDLDPVRIPYDADTKKARSRKLFEGSKWLELGYNPKDVWSVSRLHRQHA 207

Query: 201 EKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     + RR F+G E+ + Y  
Sbjct: 208 ERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQRRDFVGYEINESYCA 267

Query: 260 IATKRIASV 268
           IA +R+AS+
Sbjct: 268 IARERVASL 276


>gi|317503648|ref|ZP_07961665.1| site-specific DNA-methyltransferase (adenine-specific) [Prevotella
           salivae DSM 15606]
 gi|315665169|gb|EFV04819.1| site-specific DNA-methyltransferase (adenine-specific) [Prevotella
           salivae DSM 15606]
          Length = 319

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/275 (31%), Positives = 128/275 (46%), Gaps = 63/275 (22%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE--A 80
           +I  +    L+ +P     LI  DPPYNL       +  H          +KFS     +
Sbjct: 42  VINADLFDCLDVIPNDYFHLIIIDPPYNLA------KDFHG---------NKFSKLNTTS 86

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y+A+ R+W       L PNGTL++ G +     +  ++      ILN I W++       
Sbjct: 87  YEAYLRSWFGKVCDKLVPNGTLYMCGDWQCSLSMQKVISE-RLTILNRITWQRE------ 139

Query: 141 RGR----RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ------MRSDW------ 184
           +GR     ++NA E + +A  +PK   Y F+ +A+K   + +          DW      
Sbjct: 140 KGRGAKANWKNAMEDIWFAVKNPK--DYYFDVEAVKMKRKVIAPYKVDGKPKDWEQTESG 197

Query: 185 --------------LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
                          IP  S  E   N D    HPTQKPE L ++++++STKPGD I DP
Sbjct: 198 NFRITYPSNFWDDISIPFWSMPE---NTD----HPTQKPEKLYAKLILASTKPGDKIFDP 250

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           F GSGTS  VA KL R+++GIE+ +DY   A KR+
Sbjct: 251 FLGSGTSAVVAYKLNRNYVGIELNRDYCLWAAKRL 285


>gi|83716900|ref|YP_438879.1| N-6 adenine-specific DNA methylase [Burkholderia thailandensis
           E264]
 gi|83650725|gb|ABC34789.1| N-6 adenine-specific DNA methylase [Burkholderia thailandensis
           E264]
          Length = 259

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/249 (32%), Positives = 126/249 (50%), Gaps = 33/249 (13%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           LP  S+DLI ADPPY L   G+ Y  D           DK S  E + A+TR WL     
Sbjct: 20  LPDASIDLIVADPPYGL---GKDYGNDS----------DKRSGDE-HLAWTREWLELAIP 65

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
            LK  G+++V  ++     I + L+     ++N+I+W +  P      RRF + H+ + +
Sbjct: 66  KLKSTGSMYVFCTWQYAPEIFSFLKT-RLTMINEIIWDRRVPSMGGTTRRFTSVHDNIGF 124

Query: 155 ASPSPKAKGYTFNYDAL---------KAANEDVQMRSDWLIPICSGSE-----RLRNKDG 200
            + S   KGY F+ D +         KA +  +   S WL    +  +     RL  +  
Sbjct: 125 FAVS---KGYYFDLDPVRIPYDADTKKARSRKLFEGSKWLELGYNPKDVWSVSRLHRQHA 181

Query: 201 EKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     + RR F+G E+ + Y  
Sbjct: 182 ERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQRRDFVGYEINESYCA 241

Query: 260 IATKRIASV 268
           IA +R+AS+
Sbjct: 242 IARERVASL 250


>gi|328948974|ref|YP_004366311.1| DNA methylase N-4/N-6 domain protein [Treponema succinifaciens DSM
           2489]
 gi|328449298|gb|AEB15014.1| DNA methylase N-4/N-6 domain protein [Treponema succinifaciens DSM
           2489]
          Length = 314

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 130/283 (45%), Gaps = 55/283 (19%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ--LNGQLYRPDHSLVDAVTDSWDKFSSF 78
           ++ + G+ + +LE  P    DLI  DPPYNL    NG  +                  S 
Sbjct: 41  NRTLNGDILKMLEFTPDGFADLIIIDPPYNLSKNFNGMKFAS---------------RSQ 85

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           E YD +   W  A  + LK NG+L++ G +     +   ++     +LN I W++     
Sbjct: 86  EGYDEYLATWFPAVCKKLKSNGSLYICGDWKCTSSLQRAVER-ELTVLNRITWQREKG-- 142

Query: 139 NFRGRR--FQNAHETLIWASPSP--------------------KAKGYTFNYDALKAANE 176
             RG +  ++N  E + +A  +P                    KA G   ++D     N 
Sbjct: 143 --RGAKSNWKNGMEDIWFAVKNPADYYFDVEAVKMKRKVLAPYKADGKPKDWDEESEGNF 200

Query: 177 DVQMRS----DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
            +   S    D  +P  S  E   N D    HPTQKPE L ++++++S++PGDI+ DPF 
Sbjct: 201 RLTYPSNFWDDISVPFWSMPE---NTD----HPTQKPEKLYAKLILASSRPGDIVFDPFL 253

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           GSGT+  VAKKL R F GIE  ++Y   A KR+A  +   +I+
Sbjct: 254 GSGTASVVAKKLGRRFCGIEQNEEYCLWAEKRLALAETDKSIQ 296


>gi|254304047|ref|ZP_04971405.1| site-specific DNA-methyltransferase (adenine-specific)
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148324239|gb|EDK89489.1| site-specific DNA-methyltransferase (adenine-specific)
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 297

 Score =  110 bits (274), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 138/277 (49%), Gaps = 33/277 (11%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           I GN + +L+++   SVDLIFADPPY +   G+ +           +  D F +   Y  
Sbjct: 22  ILGNCLDILKEIKDNSVDLIFADPPYGI---GKDF----------GNKTDFFKNKYEYFE 68

Query: 84  FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
           + + W+  C RVLK +GT++ + S   +  +   + +  ++I++ IVW   +     + +
Sbjct: 69  WAKKWIDECMRVLKKDGTMYFMTSTQFMSILDNYVDD-KYFIISRIVWCYDSSGVQAKSK 127

Query: 144 RFQNAHETLIWASPSPKAKGYTFNYD-----ALKAANED-VQMRSDWLIPICS------- 190
            F + +E ++  + + K K Y FNY+     A+  +  + +  R     P  +       
Sbjct: 128 -FGSLYEPILMITHNDKVK-YKFNYEDIMVEAITGSKRNLIDYRKKIPAPYSNLKVPGNV 185

Query: 191 ---GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                 R R ++ E  HPTQKPE LL RI+++S+  GD++LDPF GS T+  VA KL R 
Sbjct: 186 WTFNRVRFRMEEYEN-HPTQKPEELLMRIILASSNKGDVVLDPFSGSFTTSNVALKLDRK 244

Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            IGIE+  +Y  I  +R    +   N +L     K+T
Sbjct: 245 AIGIEINPEYFKIGIRRTKLSEYFENEKLEKQKIKKT 281


>gi|94311402|ref|YP_584612.1| DNA methylase N-4/N-6 [Cupriavidus metallidurans CH34]
 gi|93355254|gb|ABF09343.1| DNA methylase N-4/N-6 [Cupriavidus metallidurans CH34]
          Length = 311

 Score =  110 bits (274), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 132/266 (49%), Gaps = 35/266 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++ + + +  ++++P  S+DL+ ADPPY L   G+ Y  D  L+           S +AY
Sbjct: 32  RLYQEDVLEGIKRIPDGSIDLVVADPPYGL---GKDYGNDSDLL-----------SGDAY 77

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             ++  W+ A    + P GTL++  ++     +  ML+     ++N+I+W +  P     
Sbjct: 78  LEWSERWMDAIVPKIAPRGTLYLFCTWQYSPELFVMLKR-RMTMINEIIWDRRVPSMGGT 136

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE-------- 193
            R+F + H+ + + +   + + Y F+ D ++    D + +     P   G +        
Sbjct: 137 TRKFSSVHDNIGFFA---RQRDYFFDLDPVRIPY-DAETKKARSRPRFEGKKWLEVGYNP 192

Query: 194 -------RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
                  R+  +D E+  HPTQKP  ++ R+++SS  PG I+LDPF GSGT+     +  
Sbjct: 193 KDLWSVPRIHRQDPERADHPTQKPLEIVERMVLSSCPPGGIVLDPFTGSGTTAVACVRHG 252

Query: 246 RSFIGIEMKQDYIDIATKRIASVQPL 271
           RSF+G EM  +Y  +  +R+ + QP+
Sbjct: 253 RSFVGFEMNPEYAGLVRERVTAAQPV 278


>gi|282879893|ref|ZP_06288620.1| DNA (cytosine-5-)-methyltransferase [Prevotella timonensis CRIS
           5C-B1]
 gi|281306287|gb|EFA98320.1| DNA (cytosine-5-)-methyltransferase [Prevotella timonensis CRIS
           5C-B1]
          Length = 331

 Score =  110 bits (274), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 140/295 (47%), Gaps = 65/295 (22%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ--LNGQLYRP 60
           +K  L++N+ + S  +  D II  +    L+ +P    +LI  DPPYNL    +G+    
Sbjct: 24  EKFILSVNDIKTSFAD--DTIINADLFDCLDYIPNGYFNLIIIDPPYNLDKDFHGK---- 77

Query: 61  DHSLVDAVTDSWDKFSSF--EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
                        KFSS   +AY+ + R+W       L PNGTL+V G +     +  ++
Sbjct: 78  -------------KFSSMKSDAYEDYLRSWFYKVCDKLAPNGTLYVCGDWKCSSSMQRVI 124

Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRR--FQNAHETLIWASPSPKAKGYTFNYDALK---- 172
           +     ++N I W++       RG +  ++NA E + +A  +PK   Y F+ DA+     
Sbjct: 125 EE-RLTVINRITWQREKG----RGAKSNWKNAMEDIWFAVRNPK--DYYFDVDAVMMKRK 177

Query: 173 --------------AANEDVQMR--------SDWLIPICSGSERLRNKDGEKLHPTQKPE 210
                            E+   R         D  IP  S  E   N D    HPTQKPE
Sbjct: 178 VIAPYKVDGNPKDWEETENGNFRITYPSNFWDDISIPFWSMPE---NTD----HPTQKPE 230

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
            L ++++++STK GD I DPF GSGT+  VA+KL RS+ G+E+ ++Y   A KR+
Sbjct: 231 KLYAKLVLASTKLGDKIFDPFLGSGTTAVVAQKLGRSYCGVEINREYCYWAVKRL 285


>gi|206889902|ref|YP_002248225.1| modification methylase BamHI [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206741840|gb|ACI20897.1| modification methylase BamHI [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 338

 Score =  110 bits (274), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 130/277 (46%), Gaps = 42/277 (15%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
           +N+N      +KII G+ + ++ K+P  SVD+ FADPP+NL+     Y  +H +      
Sbjct: 2   QNKNFSKSLLNKIIFGDCLEIMRKIPDNSVDVTFADPPFNLKKKYNSYYDEHDV------ 55

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI----FRIGTMLQNLNFWIL 126
                   E Y ++ + WL    R+ KP G+++V    HNI       G+ L  +  +  
Sbjct: 56  --------EIYLSWCKEWLYEMVRITKPTGSIFV----HNIPKWLIYFGSYLNEIAIFRH 103

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF----------NYDALKAANE 176
               W   + M + RG+     H  +++   S K K Y             Y       +
Sbjct: 104 ----WIAWDAMGSPRGKTLLPNHYGILYYVKSDKFKFYDIRMLHKRCRKCKYILQDYGGK 159

Query: 177 DVQMRSDWLIPICSG----SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
             QM      P+ S       R+R++     HP Q P  L+ R+L+ ++  GD+ILDPF 
Sbjct: 160 KAQMHQ--FGPLVSDVWTDIHRIRHRKRRDKHPCQLPVHLIERLLLMTSDEGDVILDPFV 217

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           G+GT+   AK+L R FIGI++ + YI+IA K++   Q
Sbjct: 218 GTGTTAIAAKRLGRRFIGIDIDEKYIEIAHKKLKETQ 254


>gi|186473194|ref|YP_001860536.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           phymatum STM815]
 gi|184195526|gb|ACC73490.1| DNA methylase N-4/N-6 domain protein [Burkholderia phymatum STM815]
          Length = 305

 Score =  110 bits (274), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 129/265 (48%), Gaps = 36/265 (13%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           LP  S+DLI ADPPY L   G+ Y  D  +            S E + A+TRAWL     
Sbjct: 54  LPDGSIDLIVADPPYGL---GKDYGNDSDM-----------RSGEDFLAWTRAWLDLAIP 99

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
            LKP+G+L++  ++     I   L+     ++N+I+W +  P      RRF + H+ + +
Sbjct: 100 KLKPSGSLYIFCTWQYAPEIFVFLKR-RLLMVNEIIWDRRVPSMGGTTRRFTSVHDNIGY 158

Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMR---------SDWLIPICSGSE-----RLRNKDG 200
            + S   K Y F+ D ++   + V  +         S WL    +  +     RL  +  
Sbjct: 159 FAVS---KDYYFDLDPVRIPYDAVTKKARSRKLFEGSKWLELGYNPKDVWSVSRLHRQHA 215

Query: 201 EKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     +  R F+G E+ + Y  
Sbjct: 216 ERVDHPTQKPLEIVERMVLASCPPGGRVLDPFMGSGTTAVACARQTREFVGYEINESYCA 275

Query: 260 IATKRI---ASVQPLGNIELTVLTG 281
           IA +R+   A+  P G+     +T 
Sbjct: 276 IARERVSLAANPPPAGSRRKAAVTA 300


>gi|167566406|ref|ZP_02359322.1| N-6 adenine-specific DNA methylase [Burkholderia oklahomensis
           EO147]
          Length = 282

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/249 (32%), Positives = 127/249 (51%), Gaps = 33/249 (13%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           LP  S+DLI ADPPY L   G+ Y  D           DK S  E + A+TR WL     
Sbjct: 46  LPDASIDLIVADPPYGL---GKDYGNDS----------DKRSGDE-HLAWTREWLDLAIP 91

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
            LK +G+++V  ++     I + L+     ++N+I+W +  P      RRF + H+ + +
Sbjct: 92  KLKSSGSMYVFCTWQYAPEIFSFLKT-KLTMVNEIIWDRRVPSMGGTTRRFTSVHDNIGF 150

Query: 155 ASPSPKAKGYTFNYDAL---------KAANEDVQMRSDWLIPICSGSE-----RLRNKDG 200
            + S   KGY F+ D +         KA +  +   S WL    +  +     RL  +  
Sbjct: 151 FAVS---KGYYFDLDPVRIPYDADTKKARSRKLFEGSKWLELGYNPKDVWSVSRLHRQHA 207

Query: 201 EKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     + RR F+G E+ + Y  
Sbjct: 208 ERVDHPTQKPLEIVERMVLASCPPGGRVLDPFMGSGTTAVACARQRRDFVGYEINESYCA 267

Query: 260 IATKRIASV 268
           IA +R+A++
Sbjct: 268 IAHERVAAL 276


>gi|325523911|gb|EGD02128.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia sp.
           TJI49]
          Length = 284

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 128/250 (51%), Gaps = 33/250 (13%)

Query: 34  KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
           +LP  S+DLI ADPPY L   G+ Y  D           DK S  +A+ A+TR WL    
Sbjct: 47  RLPDASIDLIVADPPYGL---GKDYGNDS----------DKRSG-DAFLAWTREWLELAV 92

Query: 94  RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
             LKP+G++++  ++     I + L+     ++N+I+W +  P      RRF + H+ + 
Sbjct: 93  PKLKPSGSMYIFCTWQYAPEIFSFLKT-RLTMVNEIIWDRRVPSMGGTTRRFTSVHDNIG 151

Query: 154 WASPSPKAKGYTFNYDAL---------KAANEDVQMRSDWLIPICSGSE-----RLRNKD 199
           + + S   K Y F+ D +         KA +  +   S WL    +  +     RL  + 
Sbjct: 152 FFAVS---KAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWSVSRLHRQH 208

Query: 200 GEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     +  R F+G E+ + Y 
Sbjct: 209 AERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVGYEINESYC 268

Query: 259 DIATKRIASV 268
            IA +R++++
Sbjct: 269 AIAHERVSAL 278


>gi|119489624|ref|ZP_01622384.1| DNA-methyltransferase [Lyngbya sp. PCC 8106]
 gi|119454536|gb|EAW35684.1| DNA-methyltransferase [Lyngbya sp. PCC 8106]
          Length = 295

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 135/260 (51%), Gaps = 35/260 (13%)

Query: 23  IIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +  G+++ +L  ++ + SVDLIF DPPYN+   G+ +          ++ +DK+ S E Y
Sbjct: 12  LFYGDALQILSSEISSNSVDLIFIDPPYNI---GKRF----------SNFYDKWESEEKY 58

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    L  C RVLKP+GTL+V+ S   +      L+     IL+ IVW   +     +
Sbjct: 59  ANWAYKLLDECLRVLKPSGTLYVMTSTQAMPYFDLYLRQKTV-ILSRIVWHYDSSGVQAK 117

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS--DW--LIPICSGSE---- 193
            + F + +E ++    +     Y FN D +K   +    R   D+   +P    +E    
Sbjct: 118 -KYFGSMYEPILHCVKN--KNNYIFNSDDIKVEAKTGAQRKLIDYRKAVPCQYNTEKVPG 174

Query: 194 --------RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
                   R R ++ EK HP+QKPEALL RI+++S+    ++LDPF G+ TS AVAK+L 
Sbjct: 175 NVWYFPRVRYRMEEYEK-HPSQKPEALLERIILASSNQDSLVLDPFAGTFTSAAVAKRLG 233

Query: 246 RSFIGIEMKQDYIDIATKRI 265
           R  I IE +++Y+ I  +R+
Sbjct: 234 RISISIESQEEYLKIGLRRV 253


>gi|320103609|ref|YP_004179200.1| DNA methylase N-4/N-6 domain-containing protein [Isosphaera pallida
           ATCC 43644]
 gi|319750891|gb|ADV62651.1| DNA methylase N-4/N-6 domain protein [Isosphaera pallida ATCC
           43644]
          Length = 327

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 137/275 (49%), Gaps = 48/275 (17%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +  ++ G++I+ L +L A SVDLI ADPPYNLQ                   WD+F++ E
Sbjct: 52  RGHLVTGDAIAWLNQLDAASVDLIVADPPYNLQ----------------KAKWDRFATEE 95

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND--IVWRKSNPM 137
           AY  ++  W+ A RRVLK  G+L+V G    +     + +    W  +   +VW   N  
Sbjct: 96  AYLTWSLEWIAAARRVLKETGSLYVCGFSETL---ADLKRPALRWFADCRWLVWHYRNKA 152

Query: 138 PNFRGRRFQNAHETLIWASPSPKAK-----------GYTFNYDALKAANE----DVQMRS 182
            N  GR +  +HE+++    +P  +           G+T  Y A   A      D + R+
Sbjct: 153 -NL-GRDWGRSHESILHLRVTPAFRLRLDAVRVPYGGHTVKYPARTQARTSCFGDGRSRA 210

Query: 183 DWLIPICSGSE--------RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFG 233
            W +P  +G++           N  GE+  HP+QKPE L+  ++++++   D+++DPF G
Sbjct: 211 PW-VPHPAGAKPRDVLEYPTTCNGMGERTPHPSQKPEGLIRHLILAASDEHDLVIDPFSG 269

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           SGT+   A++L R +IG + +  Y   A +R+ ++
Sbjct: 270 SGTTVVAAQQLNRRWIGCDREPSYHAWAVRRLETL 304


>gi|313667091|gb|ADR72989.1| M.BspEI [Bacillus sp. NEBM136]
          Length = 314

 Score =  109 bits (273), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 131/280 (46%), Gaps = 60/280 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+  G+SI  L+ L  +SVDLIFADPPYN++                   WD F + E+Y
Sbjct: 41  KLFLGDSIQWLKTLETESVDLIFADPPYNIK----------------KAEWDTFENQESY 84

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             ++  W++   RVLK NG+L++ G +  I        +  F     +VW   N   N  
Sbjct: 85  IQWSLEWIVEASRVLKKNGSLYICG-FSEILADLKHPASKYFKGCKWLVWHYKNKA-NL- 141

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALK-------------AANEDVQM-----RSD 183
           G+ F  +HE+L+      K K YT N D ++                E  Q      R +
Sbjct: 142 GKDFGRSHESLLHFR---KTKKYTMNQDLVRIPYGGHTLKYPSHPQAESSQYGSGKKRDN 198

Query: 184 WL-------------IPI-CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
           W+             +P  C+G       + +  HPTQKPE L+ + +++S+  GD+ILD
Sbjct: 199 WMPHPLGAKPKDVIEVPTTCNGM------NEKTPHPTQKPEELVRKFILASSNRGDVILD 252

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           PF GSGT+  VA++L R ++  +  + Y + A +RI   +
Sbjct: 253 PFSGSGTTAVVAEQLGRKWLACDTNRQYNEWAIERIQKAE 292


>gi|126464051|ref|YP_001045164.1| DNA methylase N-4/N-6 domain-containing protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126105862|gb|ABN78392.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sphaeroides ATCC
           17029]
          Length = 253

 Score =  109 bits (273), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 85/267 (31%), Positives = 123/267 (46%), Gaps = 54/267 (20%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I+ G+ ++ +  LP  SVD +  DPPY     GQ   P           WD+F       
Sbjct: 7   ILPGDCLASMRTLPDCSVDAVVTDPPY-----GQTSLP-----------WDRF------- 43

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM-LQNLNFWIL-NDIVWRKSNPMPNF 140
                W+    R+LKP G++WV G+     R+ T   +  + W L  DIVW K N   +F
Sbjct: 44  --VYGWMPEIARILKPTGSVWVFGT----LRMFTQHWREFDGWTLAQDIVWEKHN-GSSF 96

Query: 141 RGRRFQNAHETLI------WASPSPKAKGYTFNYDALKA--ANEDVQM----RSDWLIPI 188
              RF+  HE         WAS   K K  T +  A  A      V M    R  ++   
Sbjct: 97  HADRFRRVHEQAAHFYRGDWASVY-KGKVVTMDATAKTARRKTRPVHMGQIERGSYVSE- 154

Query: 189 CSGSERL-------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
             G  RL       R++ G  +HPTQKP A++  +++++  PG ++LDPF GSGT+G VA
Sbjct: 155 -DGGPRLMRSVIYARSEHGHAVHPTQKPAAIIEPLILNACPPGGVVLDPFAGSGTTGGVA 213

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASV 268
            +L R  I  E   DY+    +RI+ +
Sbjct: 214 ARLGRRAILCEGNPDYLSAMERRISGI 240


>gi|126175812|ref|YP_001051961.1| DNA methylase N-4/N-6 domain-containing protein [Shewanella baltica
           OS155]
 gi|125999017|gb|ABN63092.1| DNA methylase N-4/N-6 domain protein [Shewanella baltica OS155]
          Length = 296

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 134/296 (45%), Gaps = 57/296 (19%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           E  +KI  G+S++ L+ LP  S+D I   PPY  Q        D+ +   + +     S 
Sbjct: 5   ELANKIFTGDSLASLKALPKNSIDCIVTSPPYYGQR-------DYGMDGQIGNE----SK 53

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWV-IGSYHNI-------FRIGTMLQNLNFWILNDI 129
            E Y          C+RVLK +G+LW+ +G  +N        +R+   LQ+  + + NDI
Sbjct: 54  LEEYIENLVNIFNECKRVLKDSGSLWLNLGDKYNKGNLMGMPWRVALALQDEGWILRNDI 113

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL----KAANEDVQMRS--D 183
           +W K N MP+    R    HE + +   + KAK Y ++ DA+    K  +ED +M+   +
Sbjct: 114 IWHKPNAMPHSAKNRLTTDHEYIFFF--TKKAKDYYYDQDAIREEHKTFSEDSKMKGGRN 171

Query: 184 WLIPICSGSERLRNKDGEKLH---------------------PTQK---------PEALL 213
                    E+ +N     LH                     P  K         PE L+
Sbjct: 172 HFGKNGGTPEKGKNSGNSNLHDGRWDQAFHPNGRNKRTVWNVPLSKFRGAHFAVFPERLI 231

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
              +++      I+LDPFFG+GT+G VA +  R ++G+E+  +Y +IA  R+ +VQ
Sbjct: 232 EPCILAGCPKNGIVLDPFFGAGTTGFVAAQQGRKYVGLELNPEYAEIAENRLKTVQ 287


>gi|60682880|ref|YP_213024.1| putative methyltransferase [Bacteroides fragilis NCTC 9343]
 gi|60494314|emb|CAH09109.1| putative DNA methylase [Bacteroides fragilis NCTC 9343]
          Length = 286

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 129/260 (49%), Gaps = 33/260 (12%)

Query: 22  KIIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           KII G++I  L+ ++   SVDLIFADPPYN+  N                  DK+ + + 
Sbjct: 10  KIIHGDAIEALKNEIEDNSVDLIFADPPYNIGKN-------------FAGCIDKWETDDK 56

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y ++   WL  C R LKP+G  +V+ S   +      L+     IL+ ++W   +     
Sbjct: 57  YLSWCYQWLDLCIRKLKPSGAFYVMTSTQFMPFFDLYLRE-KLTILSRLIWYYDSSGVQA 115

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDAL------KAANEDVQMRSDWLIPICSGS-- 192
           +   F + +E +++         YTFN +A+       A    +  R +   P  +    
Sbjct: 116 KNY-FGSMYEPILFCVKD--KNNYTFNSEAILVEAKTGAKRGLIDYRKNPPQPYSTEKVP 172

Query: 193 ------ERLRNK-DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
                  R+R + D  + HPTQKP ALL RI+ +S+  GD+ILDPF G+ T+  VAK L 
Sbjct: 173 GNVWEFARVRYRMDEYENHPTQKPVALLERIIKASSNEGDLILDPFSGTFTTAFVAKTLN 232

Query: 246 RSFIGIEMKQDYIDIATKRI 265
           R  IGIE+++DY+ I  +R+
Sbjct: 233 RRAIGIELQEDYVKIGLRRL 252


>gi|119511116|ref|ZP_01630234.1| type IIS restriction enzyme M1 protein (mod) [Nodularia spumigena
           CCY9414]
 gi|119464211|gb|EAW45130.1| type IIS restriction enzyme M1 protein (mod) [Nodularia spumigena
           CCY9414]
          Length = 293

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 137/300 (45%), Gaps = 56/300 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+ +GNSI  L  L ++S+DL+FADPPYN++                   WD F + E Y
Sbjct: 18  KLYQGNSIDWLTSLESESIDLVFADPPYNIK----------------KAEWDNFENQEKY 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             ++  W+    R+LK  G+L++ G +  I        +  F     ++W   N   N  
Sbjct: 62  IEWSIQWISQASRILKSTGSLYICG-FSEILADLKHPASKYFKSCRWLIWHYKNKA-NL- 118

Query: 142 GRRFQNAHETLIWASPSPKAK-----------GYTFNYDALKAANEDV------QMRSDW 184
           G  +  +HE++I    S   K            +T  Y +   A          +  ++W
Sbjct: 119 GNDWGRSHESIIHFRKSDSVKLNIDDVRIPYGAHTLKYPSHPQAETSAYGKGTKKKHNNW 178

Query: 185 L-------------IPI-CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
                         IP  C+G       D +  HPTQKPE L+ + +++S++ GD+I+DP
Sbjct: 179 TPNPKGAKPKDVIEIPTTCNGM------DEKTPHPTQKPEELIRKFVLASSQEGDLIIDP 232

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAF 290
           F GSGT+  VA++L R ++G ++  +Y   ATKRI +V+ +   E      K  E RV+ 
Sbjct: 233 FSGSGTTVVVAEQLNRYWMGCDLNIEYNYWATKRIENVRRMTKEEWLAFDRKNAERRVSI 292


>gi|269838385|ref|YP_003320613.1| DNA methylase N-4/N-6 domain-containing protein [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787648|gb|ACZ39791.1| DNA methylase N-4/N-6 domain protein [Sphaerobacter thermophilus
           DSM 20745]
          Length = 307

 Score =  109 bits (272), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 135/283 (47%), Gaps = 46/283 (16%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR------PDHSLVDAVTDS 71
           E+ D I+  ++++VL  LP   V LI+ DPP+N      L R      PD   V     +
Sbjct: 7   EYVDTIVYSDNLAVLRTLPDGCVPLIYIDPPFNTGKTRSLTRLRTTRDPDGDRVGFQGQT 66

Query: 72  W-------DKFSS-FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-- 121
           +        +F+  F+ Y AF    L+  RRVL PNGTL+V      +  +  +L  +  
Sbjct: 67  YRTLRLGTTRFADVFDDYLAFLEPRLVEARRVLAPNGTLYVHLDPREVHYVKVLLDGIFG 126

Query: 122 NFWILNDIVWRKSNPMPNFRGR---RFQNAHETLIWASPSPKAKGYTFNYDAL------- 171
               LN+I+W       +F GR   R+   H+ ++    SP+   Y FN DA+       
Sbjct: 127 RECFLNEIIWAY-----DFGGRSTRRWPAKHDNILVYVASPR--DYVFNVDAIDRIPYMA 179

Query: 172 -------KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
                  KAA   +   + W   + +   + R + G   +PTQKP  +L RI+ +S+ PG
Sbjct: 180 PGLVGPEKAARGKLPTDTWWATIVPT---KARERTG---YPTQKPLTILRRIIAASSNPG 233

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           D++LD F GSGT+G  A++L R F+ ++   + + +  +R A 
Sbjct: 234 DLVLDFFAGSGTTGVAARELGRRFLLVDNNPEALQVMARRFAG 276


>gi|254185002|ref|ZP_04891591.1| DNA modification methylase RsrI [Burkholderia pseudomallei 1655]
 gi|184215594|gb|EDU12575.1| DNA modification methylase RsrI [Burkholderia pseudomallei 1655]
          Length = 282

 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 80/249 (32%), Positives = 125/249 (50%), Gaps = 33/249 (13%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           LP  S+DLI A PPY L   G+ Y  D           DK S  E + A+TR WL     
Sbjct: 43  LPDASIDLIVAGPPYGL---GKDYGNDS----------DKRSGDE-HLAWTREWLELAVP 88

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
            LK  G+++V  ++     I + L+     ++N+I+W +  P      RRF + H+ + +
Sbjct: 89  KLKSTGSMYVFCTWQYAPEIFSFLKT-KLTMVNEIIWDRRVPSMGGTTRRFTSVHDNIGF 147

Query: 155 ASPSPKAKGYTFNYDAL---------KAANEDVQMRSDWLIPICSGSE-----RLRNKDG 200
            + S   KGY F+ D +         KA +  +   S WL    +  +     RL  +  
Sbjct: 148 FAVS---KGYYFDLDPVRIPYDADTKKARSRKLFEGSKWLELGYNPKDVWSVSRLHRQHA 204

Query: 201 EKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     + RR F+G E+ + Y  
Sbjct: 205 ERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQRRGFVGYEINESYCA 264

Query: 260 IATKRIASV 268
           IA +R+AS+
Sbjct: 265 IARERVASL 273


>gi|15645979|ref|NP_208159.1| type IIS restriction enzyme M1 protein (mod) [Helicobacter pylori
           26695]
 gi|2314538|gb|AAD08411.1| type IIS restriction enzyme M1 protein (mod) [Helicobacter pylori
           26695]
          Length = 260

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 123/263 (46%), Gaps = 44/263 (16%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   +  + L+KL  KSVDL   DPPYNL++                 SWD F + E 
Sbjct: 4   NKIYIEDVFTFLDKLEDKSVDLAIIDPPYNLKIA----------------SWDSFKNDEE 47

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           +  F+ AW+      LK  G+ ++  +  N       L +     LN I W K +   N 
Sbjct: 48  FLTFSYAWIDKMLPKLKDTGSFYIFNTPFNCALFLAYLHHKKVHFLNFITWVKKDGFANA 107

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ----------MRSD------- 183
           + +R+ +A E++++ S     K YTFN D ++ A E  +          ++++       
Sbjct: 108 K-KRYNHAQESILFYSMH--KKNYTFNADEIRIAYESAERIKHAQSKGILKNNKRWFPNP 164

Query: 184 --------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
                   W I      E+ + K  +  HP+ KP+AL+ R++ +S+   D+ILD F GSG
Sbjct: 165 KGKLCLDVWEITSQRHVEKEKGKILKPKHPSIKPKALIERMIKASSHKNDLILDLFSGSG 224

Query: 236 TSGAVAKKLRRSFIGIEMKQDYI 258
            +  VAK L R+FIG E   +Y+
Sbjct: 225 MTSLVAKSLERNFIGCESHAEYV 247


>gi|219849124|ref|YP_002463557.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
           aggregans DSM 9485]
 gi|219543383|gb|ACL25121.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aggregans DSM
           9485]
          Length = 304

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 141/302 (46%), Gaps = 58/302 (19%)

Query: 1   MSQKNSLAINENQNSIF--EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
           M   N   I+ N  ++F      +I  G++I+ L  L  +SVD+IFADPPYN++      
Sbjct: 6   MFDSNESQIDPNTPTLFYSHPHGEIWVGDAIAWLRSLETESVDMIFADPPYNIK------ 59

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
                        WD F S E Y  ++  W+    RVLKP+GTL++ G    I  +    
Sbjct: 60  ----------KAEWDTFESQEEYVEWSLLWIREAARVLKPSGTLYICGFSEIIADLKLPA 109

Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
             L F     ++W   N   N  G  +  +HE+++      K+K +TFN D ++    + 
Sbjct: 110 SRL-FKGCRWLIWHYKNKA-NL-GSDWGRSHESILHFR---KSKNFTFNIDDVRIPYGNH 163

Query: 179 QMR--------------------SDW-----------LIPICSGSERLRNKDGEKLHPTQ 207
            ++                    + W           +I I +    +  K     HPTQ
Sbjct: 164 TLKYPEHPQAETSQYGKGNGRKNTIWQPHPRGAKPRDVIEIPTTCNGMHEKTP---HPTQ 220

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           KPE LL +++++S+  GD+I+DPF GSGT+  VA++LRR++ G ++  +Y   A +RI  
Sbjct: 221 KPEELLRKLVLASSNVGDLIVDPFLGSGTTAVVAEQLRRNWKGCDISLEYCRWAVRRIEL 280

Query: 268 VQ 269
           V+
Sbjct: 281 VE 282


>gi|240047330|ref|YP_002960718.1| Modification methylase HpaI [Mycoplasma conjunctivae HRC/581]
 gi|239984902|emb|CAT04895.1| Modification methylase HpaI [Mycoplasma conjunctivae]
          Length = 299

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 126/251 (50%), Gaps = 23/251 (9%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII GN+I  L+K+ +KS++LI  DPPYNL  +               ++ D    FE Y
Sbjct: 6   KIICGNAIEELKKIESKSINLIVTDPPYNLNKD-------------YGNNKDNLK-FEEY 51

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNF 140
             F+R WL   +R+LK +GT+++      I  I ++L+  LN    + I W  +  +   
Sbjct: 52  LEFSRQWLTEAKRILKDDGTIYIFMGTRYISYIYSILEKELNMHFNSWITWFYTQGIGKT 111

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ----MRSDWLIPICSGSERLR 196
           +G  F   H+ ++  +   K+K +TFN D ++   +  +    MR      +   S    
Sbjct: 112 KG--FSPRHDDILMFTKH-KSK-FTFNLDDIRVPQKFYRSVNNMRGANPGNVWQFSHMHY 167

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                K HPTQKPE L  R+++ S+   D +LDPF GSGT   V ++  R  IGI++ ++
Sbjct: 168 CNKNRKKHPTQKPEGLYERMILVSSNENDTVLDPFVGSGTMLRVCQQTNRRGIGIDINEE 227

Query: 257 YIDIATKRIAS 267
           Y+ +  +R+  
Sbjct: 228 YVRMCKERLEE 238


>gi|227528860|ref|ZP_03958909.1| adenine-specific methyltransferase [Lactobacillus vaginalis ATCC
           49540]
 gi|227351222|gb|EEJ41513.1| adenine-specific methyltransferase [Lactobacillus vaginalis ATCC
           49540]
          Length = 322

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 132/273 (48%), Gaps = 55/273 (20%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
           A  E   S+ +  +K+I G+S  V+++LP+ S+DL   DPPYNL          +   D 
Sbjct: 27  AKKEKSFSLEQVTNKVINGDSFQVMDQLPSHSIDLALVDPPYNL----------NKKYDG 76

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
           +T    K + ++ Y   T  W+   + +LK + +++V   +     +  +L+   F I N
Sbjct: 77  MTFKQMKPAEYQQY---TEDWINKLKPLLKASASVYVFADWETSIVLAPVLEQY-FTIKN 132

Query: 128 DIVWRKSNPMPNFRGR----RFQNAHETLIWASPSP--------------------KAKG 163
            I W++       +GR     ++N+ E + + +  P                    K  G
Sbjct: 133 RITWQRE------KGRGALTNWKNSSEDIWFLTVDPHDYVFNVDQVKQRRPVVAPYKEDG 186

Query: 164 YTFNYDALKAANEDVQMRS----DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVS 219
           +  ++ A KA N    M S    D  IP  S  E   N D    HPTQKPE L+++++++
Sbjct: 187 HAKDWQATKAGNFRDTMPSNLWDDISIPYWSMPE---NTD----HPTQKPEKLMAKVILA 239

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           S+ PGD+I DPF G+G+S   AKKL R FIGIE
Sbjct: 240 SSNPGDLIFDPFAGAGSSLVTAKKLGRHFIGIE 272


>gi|299141019|ref|ZP_07034157.1| methyltransferase [Prevotella oris C735]
 gi|298577985|gb|EFI49853.1| methyltransferase [Prevotella oris C735]
          Length = 340

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 139/290 (47%), Gaps = 65/290 (22%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ--LNGQLYRPDHSLV 65
           +I + ++ +F+  D I+ G+ +  L  +P +  +LI  DPPYNL    NG          
Sbjct: 50  SIEDLKSGLFD--DVIVHGDLLDCLGLIPDEYFNLIVIDPPYNLDKDFNG---------- 97

Query: 66  DAVTDSWDKFSSFEA--YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
                  ++FS+ ++  Y+ + R+W       L+P+G+L++ G +     +  +++    
Sbjct: 98  -------NRFSAMKSAGYEDYLRSWFGQVCDKLRPDGSLYMCGDWKCSASMQRVIEE-RL 149

Query: 124 WILNDIVWRKSNPMPNFRGRR--FQNAHETLIWASPSPKAKGYTFNYDALKAA------- 174
            ++N I W++       RG R  ++N  E + +A  +PK   Y FN DA+K         
Sbjct: 150 TVINRITWQREKG----RGARMNWKNGMEDIWFAVKNPK--DYYFNIDAVKVKRRVRAPY 203

Query: 175 -----------NEDVQMR--------SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
                      +ED + R         D  +P  S  E          HPTQKPE L ++
Sbjct: 204 RIEGQPKDWEQSEDGKYRFTCPSNFWDDISVPFWSMPENTE-------HPTQKPEKLYAK 256

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           +L++S+K GD + DPF GSGT   VA+KL R F G+E+ ++Y   A KR+
Sbjct: 257 LLLASSKSGDRVFDPFLGSGTLAVVARKLNRKFCGVEINEEYCLWAAKRL 306


>gi|281420151|ref|ZP_06251150.1| DNA (cytosine-5-)-methyltransferase [Prevotella copri DSM 18205]
 gi|281405951|gb|EFB36631.1| DNA (cytosine-5-)-methyltransferase [Prevotella copri DSM 18205]
          Length = 217

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/137 (42%), Positives = 83/137 (60%), Gaps = 6/137 (4%)

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           + NP PN   R F  + E +IWA   PK   Y FNYD +K  NE+ QM   W +P  +  
Sbjct: 46  EDNPPPNISCRYFTYSTEFIIWARKCPKKPHY-FNYDLMKLLNENKQMTDVWRLPAIARW 104

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           E+ + K     HPTQKP ALL RI+++ST+ G  ILDPF GSGT+G  A    R ++GIE
Sbjct: 105 EKSQGK-----HPTQKPLALLVRIILASTRHGAWILDPFSGSGTTGIAASLTGRRYLGIE 159

Query: 253 MKQDYIDIATKRIASVQ 269
            +++Y+D++ +R   ++
Sbjct: 160 REKEYLDLSIRRRVELE 176


>gi|254421699|ref|ZP_05035417.1| DNA methylase domain protein [Synechococcus sp. PCC 7335]
 gi|196189188|gb|EDX84152.1| DNA methylase domain protein [Synechococcus sp. PCC 7335]
          Length = 330

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/277 (29%), Positives = 130/277 (46%), Gaps = 61/277 (22%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ--LNGQLYRPDHSLVDAVTDSWDKFSSF 78
           D+ I  +S++ L  +P   VDL+  DPPYN Q   NG  +               K    
Sbjct: 50  DRTIHQDSLTALPLMPDSFVDLLIVDPPYNRQKDFNGSTF---------------KVMPE 94

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
             Y  +  +W+    R+LKP  ++++   + +   I  +    +F + N I W +     
Sbjct: 95  ADYQIWLASWMSQLPRLLKPTASIYMCCDWQSSNAIYQVFSR-HFQVRNRITWEREK--- 150

Query: 139 NFRG--RRFQNAHETLIWASPSPKAKGYTFNYDALK-------AANEDVQMRSDWL---- 185
             RG  R ++NA E + + + S K   YTFN +A+K          ++     DW     
Sbjct: 151 -GRGAKRNWKNASEDIWFGTMSDK---YTFNVEAVKLQRRVRAPYRDNAGKPKDWQETQQ 206

Query: 186 ----------------IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
                           IP  S +E   N D    HPTQKPE L+++++++S+ PG+++ D
Sbjct: 207 GNFRNTYPSNLWTDISIPFWSMAE---NTD----HPTQKPEKLIAKMVLASSNPGNVVFD 259

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           PF GSGT+  VAKKL R ++GIE ++ Y   A KR+A
Sbjct: 260 PFLGSGTTSVVAKKLGRHYVGIEQEELYACWAQKRLA 296


>gi|255066897|ref|ZP_05318752.1| DNA (cytosine-5-)-methyltransferase [Neisseria sicca ATCC 29256]
 gi|255048972|gb|EET44436.1| DNA (cytosine-5-)-methyltransferase [Neisseria sicca ATCC 29256]
          Length = 285

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 131/265 (49%), Gaps = 42/265 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KI   + +  L  +   SVDLIFADPPYN+      ++          DSW    + + Y
Sbjct: 10  KIYLADCLDALNDIQDNSVDLIFADPPYNIGKKFSQFK----------DSW---KTEKEY 56

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +   WL  C   LK NG+L+V+ S  ++  I   L+     IL+ I+W   +     +
Sbjct: 57  IEWCYKWLSLCLNKLKDNGSLYVMASTQSMPYIDIWLRE-RMTILSRIIWHYDSSGVQAK 115

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALK------AANEDVQMRSD------------ 183
            + + + +E +++A  + K+  YTFN   ++      A  + +  R +            
Sbjct: 116 -KYYGSLYEPILFAVKNNKS--YTFNSSDIEIEAKTGAKRKLIDYRKEIPTPYKTTKVPG 172

Query: 184 --WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
             W  P      R R ++ E  HP+QKPEALL RI+ +ST  GD++LDPF G+ ++ AVA
Sbjct: 173 NTWYFPRV----RYRMEEYEN-HPSQKPEALLERIIRASTNEGDLVLDPFGGTFSTSAVA 227

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIA 266
           +KL R  I IE +++Y+ I  +R+ 
Sbjct: 228 QKLNRKSISIEFQEEYLKIGLRRLG 252


>gi|118576082|ref|YP_875825.1| DNA modification methylase [Cenarchaeum symbiosum A]
 gi|118194603|gb|ABK77521.1| DNA modification methylase [Cenarchaeum symbiosum A]
          Length = 252

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/269 (30%), Positives = 128/269 (47%), Gaps = 51/269 (18%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           + I  LE +  K+VDL   DPPYNL++                D WD F S E +  FT 
Sbjct: 2   DCIRFLEGIGDKTVDLAVVDPPYNLKV----------------DKWDTFESQEDFLKFTF 45

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL---NFWILNDIVWRKSNPMPNFRGR 143
           AW+      LK    L+V   ++  F    MLQ+L        N I W K + M ++  +
Sbjct: 46  AWMDCLVPKLKETAGLYV---FNTPFNSAYMLQHLVEQGLMFQNWITWDKRDGM-SYTKK 101

Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ----MRSDWLIP------------ 187
           R+ N  ET+++ + S K   YTFN+D ++   E VQ     ++  ++             
Sbjct: 102 RYANGQETILFFTKSGK---YTFNHDDIRVPYESVQRIEHAKTRGILKNGKRWYPNSRGR 158

Query: 188 ICS-----GSERLRNKDGEKL----HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
           +C       SER + K   K+    H T KP  ++ RI+ +S+  GD+++D F GSGT+ 
Sbjct: 159 MCGEIWHMSSERHKVKVNGKVQRLPHKTVKPLDMIKRIITASSNEGDLVIDCFAGSGTTA 218

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
              K+L R+FIG +  + Y+  A +RI +
Sbjct: 219 LACKQLNRNFIGCDSNEQYVLSARRRIRT 247


>gi|167583952|ref|ZP_02376340.1| DNA methylase N-4/N-6 domain protein [Burkholderia ubonensis Bu]
          Length = 283

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 126/251 (50%), Gaps = 33/251 (13%)

Query: 34  KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
           +LP  S+DLI ADPPY L   G+ Y  D           DK S  + + A+T AWL    
Sbjct: 46  RLPDASIDLIVADPPYGL---GKDYGNDS----------DKRSG-DDHLAWTLAWLELAI 91

Query: 94  RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
             LKP G+++V  ++     I + L+     ++N+I+W +  P      RRF + H+ + 
Sbjct: 92  PKLKPTGSMYVFCTWQYAPEIFSFLKT-KLTMINEIIWDRRVPSMGGTTRRFTSVHDNIG 150

Query: 154 WASPSPKAKGYTFNYDAL---------KAANEDVQMRSDWLIPICSGSE-----RLRNKD 199
           + + S   K Y F+ D +         KA +  +   S WL    +  +     RL  + 
Sbjct: 151 FFAVS---KAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWSVSRLHRQH 207

Query: 200 GEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     +  R F+G E+ + Y 
Sbjct: 208 AERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVGYEINESYC 267

Query: 259 DIATKRIASVQ 269
            IA +RIA++ 
Sbjct: 268 AIAHERIAALD 278


>gi|317013155|gb|ADU83763.1| type IIS restriction enzyme M1 protein (mod) [Helicobacter pylori
           Lithuania75]
          Length = 258

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 124/263 (47%), Gaps = 44/263 (16%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   +  + L+KL  KSVDL   DPPYNL++                 SWD F + E 
Sbjct: 4   NKIYIEDVFTFLDKLEDKSVDLAIIDPPYNLKIA----------------SWDSFKNDEE 47

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           +  F+ AW+      LK  G+ ++  +  N       L++     LN I W K +   N 
Sbjct: 48  FLTFSYAWIDKMLPKLKDTGSFYIFNTPFNCALFLAYLRHKKAHFLNFITWVKKDGFANA 107

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ----------MRSD------- 183
           + +R+ +A E++++ S     K YTFN D ++ A E  +          ++++       
Sbjct: 108 K-KRYNHAQESILFYSMH--KKNYTFNADEVRIAYESTERIKHAQSKGILKNNKRWFPNP 164

Query: 184 --------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
                   W I      E+ + K  +  HP+ KP+AL+ R++ +S+   D+ILD F GSG
Sbjct: 165 KGKLCLDVWEITSQRHVEKEKGKILKPKHPSIKPKALIERMIKASSHKNDLILDLFSGSG 224

Query: 236 TSGAVAKKLRRSFIGIEMKQDYI 258
            +  VAK L R+FIG E   +Y+
Sbjct: 225 MTSLVAKSLERNFIGCESHAEYV 247


>gi|134293157|ref|YP_001116893.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134136314|gb|ABO57428.1| DNA methylase N-4/N-6 domain protein [Burkholderia vietnamiensis
           G4]
          Length = 283

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 127/250 (50%), Gaps = 33/250 (13%)

Query: 34  KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
           +LP  S+DLI ADPPY L   G+ Y  D           DK S  +A+ A+TR WL    
Sbjct: 46  RLPDASIDLIVADPPYGL---GKDYGNDS----------DKRSG-DAFLAWTREWLDLAI 91

Query: 94  RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
             LKP+G++++  ++     I + L+     ++N+I+W +  P      RRF + H+ + 
Sbjct: 92  PKLKPSGSMYIFCTWQYAPEIFSFLKT-KLTMVNEIIWDRRVPSMGGTTRRFTSVHDNIG 150

Query: 154 WASPSPKAKGYTFNYDAL---------KAANEDVQMRSDWLIPICSGSE-----RLRNKD 199
           + + S   K Y F+ D +         KA +  +   S WL    +  +     RL  + 
Sbjct: 151 FFAVS---KAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWSVSRLHRQH 207

Query: 200 GEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     +  R F+G E+ + Y 
Sbjct: 208 AERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVGYEINESYC 267

Query: 259 DIATKRIASV 268
            IA +R+ ++
Sbjct: 268 AIAHERVNAL 277


>gi|281424234|ref|ZP_06255147.1| putative DNA-methyltransferase protein [Prevotella oris F0302]
 gi|281401503|gb|EFB32334.1| putative DNA-methyltransferase protein [Prevotella oris F0302]
          Length = 337

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 138/290 (47%), Gaps = 65/290 (22%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ--LNGQLYRPDHSLV 65
           +I + ++ +F+  D I+ G+ +  L  +P +  +LI  DPPYNL    NG          
Sbjct: 47  SIEDLKSGLFD--DVIVHGDLLDCLGLIPDEYFNLIVIDPPYNLDKDFNG---------- 94

Query: 66  DAVTDSWDKFSSFEA--YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
                  ++FS+ ++  Y+ + R+W       L+P+G L++ G +     +  +++    
Sbjct: 95  -------NRFSAMKSAGYEDYLRSWFGQVCDKLRPDGALYMCGDWKCSASMQRVIEE-RL 146

Query: 124 WILNDIVWRKSNPMPNFRGRR--FQNAHETLIWASPSPKAKGYTFNYDALKAA------- 174
            ++N I W++       RG R  ++N  E + +A  +PK   Y FN DA+K         
Sbjct: 147 TVINRITWQREKG----RGARMNWKNGMEDIWFAVKNPK--DYYFNIDAVKVKRRVRAPY 200

Query: 175 -----------NEDVQMR--------SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
                      +ED + R         D  +P  S  E          HPTQKPE L ++
Sbjct: 201 RIEGQPKDWEQSEDGKYRFTCPSNFWDDISVPFWSMPENTE-------HPTQKPEKLYAK 253

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           +L++S+K GD + DPF GSGT   VA+KL R F G+E+ ++Y   A KR+
Sbjct: 254 LLLASSKSGDRVFDPFLGSGTLAVVARKLNRKFCGVEINKEYCLWAAKRL 303


>gi|221196942|ref|ZP_03569989.1| DNA modification methylase RsrI [Burkholderia multivorans CGD2M]
 gi|221203612|ref|ZP_03576631.1| DNA modification methylase RsrI [Burkholderia multivorans CGD2]
 gi|221177546|gb|EEE09974.1| DNA modification methylase RsrI [Burkholderia multivorans CGD2]
 gi|221183496|gb|EEE15896.1| DNA modification methylase RsrI [Burkholderia multivorans CGD2M]
          Length = 283

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 126/250 (50%), Gaps = 33/250 (13%)

Query: 34  KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
           +LP  S+DLI ADPPY L   G+ Y  D           DK S  +A+  +TR WL    
Sbjct: 46  RLPDASIDLIVADPPYGL---GKDYGNDS----------DKRSG-DAFLGWTREWLELAI 91

Query: 94  RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
             LKP+G+++V  ++     I + L+     ++N+I+W +  P      RRF + H+ + 
Sbjct: 92  PKLKPSGSMYVFCTWQYAPEIFSFLKT-KLTMINEIIWDRRVPSMGGTTRRFTSVHDNIG 150

Query: 154 WASPSPKAKGYTFNYDAL---------KAANEDVQMRSDWLIPICSGSE-----RLRNKD 199
           + + S   K Y F+ D +         KA +  +   S WL    +  +     RL  + 
Sbjct: 151 FFAVS---KAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWSVSRLHRQH 207

Query: 200 GEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     +  R F+G E+ + Y 
Sbjct: 208 AERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVGYEINESYC 267

Query: 259 DIATKRIASV 268
            IA +R+ ++
Sbjct: 268 AIARERVHAL 277


>gi|207109001|ref|ZP_03243163.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 175

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/178 (37%), Positives = 93/178 (52%), Gaps = 13/178 (7%)

Query: 88  WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
           W+     ++ PNG + +  SY  I  I   L+   F + + I W K+NPMP    RR+  
Sbjct: 8   WIKHYAPLVNPNGCMIIFCSYRFISYIADFLEENGFVVKDFIQWVKTNPMPRNIHRRYVQ 67

Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
             E  +WA    KAK + FN    K  NE          P+ SG E+++       HPTQ
Sbjct: 68  DTEFALWAVKK-KAK-WVFN----KPKNEKYLRPLILKSPVVSGLEKVK-------HPTQ 114

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           K  AL+ +I+   T P DI+LDPF GSGT+G   K L R+FIGIE +++Y   A KR+
Sbjct: 115 KSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKNLERNFIGIESEKEYFQTAKKRL 172


>gi|315586029|gb|ADU40410.1| site-specific DNA-methyltransferase (adenine-specific)
           [Helicobacter pylori 35A]
          Length = 260

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 123/264 (46%), Gaps = 46/264 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   +  + L+KL  KSVDL   DPPYNL++                 SWD F + E 
Sbjct: 4   NKIYIEDVFTFLDKLEDKSVDLAIIDPPYNLKIA----------------SWDSFKNDEE 47

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           +  F+ AW+      LK  G+ ++  +  N       L++     LN I W K +   N 
Sbjct: 48  FLTFSYAWIDKMLPKLKDTGSFYIFNTPFNCALFLAYLRHKKVHFLNFITWVKKDGFANA 107

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM------------RSDWLIPI 188
           + +R+ +A E++++ S     K YTFN D ++ A E  +                W  P 
Sbjct: 108 K-KRYNHAQESILFYSMH--KKNYTFNADEIRTAYESTERIKHAQSKGILKNNKRWF-PN 163

Query: 189 CSG----------SERLRNKDGEKL----HPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
             G          S+R   K+  K+    HP+ KP+AL+ R++ +S+   D+ILD F GS
Sbjct: 164 PKGKLCLDVWEITSQRHVEKENGKILKPKHPSIKPKALIERMIKASSHKNDLILDLFSGS 223

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYI 258
           G +  VAK L R+FIG E   +Y+
Sbjct: 224 GMTSLVAKSLGRNFIGCETHAEYV 247


>gi|317010047|gb|ADU80627.1| type IIS restriction enzyme M1 protein (mod) [Helicobacter pylori
           India7]
          Length = 260

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 123/263 (46%), Gaps = 44/263 (16%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   +  + L+KL  KSVDL   DPPYNL++                 SWD F + E 
Sbjct: 4   NKIYIEDVFTFLDKLEDKSVDLAIIDPPYNLKIA----------------SWDSFKNDEE 47

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           +  F+ AW+      +K  G+ ++  +  N       L++     LN I W K +   N 
Sbjct: 48  FLTFSYAWIDKVLPKIKDTGSFYIFNTPFNCALFLAYLRHKKVHFLNFITWVKKDGFANA 107

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM------------RSDWLI-- 186
           + +R+ +A E++++ S     K YTFN D ++ A E  +                W    
Sbjct: 108 K-KRYNHAQESILFYSMH--KKNYTFNADEIRIAYESTERIKHAQSKGILKNNKRWFPNP 164

Query: 187 --PIC-----SGSERLRNKDGEKL----HPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
              +C       S+R   K+  K+    HP+ KP+AL+ R++ +S+   D+ILD F GSG
Sbjct: 165 KGKLCLDVWEIASQRHVEKENGKILKPKHPSIKPKALIERMIKASSHKNDLILDLFSGSG 224

Query: 236 TSGAVAKKLRRSFIGIEMKQDYI 258
            +  VAK L R+FIG E   +Y+
Sbjct: 225 MTSLVAKSLERNFIGCESHAEYV 247


>gi|291165802|gb|EFE27850.1| DNA (cytosine-5-)-methyltransferase [Filifactor alocis ATCC 35896]
          Length = 310

 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 130/277 (46%), Gaps = 64/277 (23%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ--LNGQLYRPDHSLVDAVTDSWDKFSSF 78
           DK I G++   +  LP   VDL+  DPPYNL    NG+ ++    L D  TD        
Sbjct: 37  DKTILGDTFDTIPYLPKNFVDLLIVDPPYNLDKNFNGKQFK---QLND--TD-------- 83

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
             Y+ +T+ W+     +LK   +++V   + +   IG +L+   F++ N I W++     
Sbjct: 84  --YEEYTKQWIQKVIPLLKDTASVYVCCDWKSSLIIGNILKQY-FFLQNRITWQRE---- 136

Query: 139 NFRGR----RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE- 193
             +GR     ++N  E + +A+   K+K +TF+        EDV++R   L P     + 
Sbjct: 137 --KGRGAMSNWKNGMEDIWFAT---KSKNFTFHV-------EDVKIRRKVLAPYRKNGKP 184

Query: 194 ---------RLRNKDGEKL----------------HPTQKPEALLSRILVSSTKPGDIIL 228
                    + RN                      HPTQKPE LL++++++S+  GD++ 
Sbjct: 185 KDWEETENGKFRNTYPSNFWDDISIPYWSMSENTAHPTQKPEKLLAKLILASSNRGDVVF 244

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           DPF GSG++   AKKL R F+GIE    Y     KR+
Sbjct: 245 DPFLGSGSTSVTAKKLNRHFVGIEQNPQYCIWTEKRL 281


>gi|161521164|ref|YP_001584591.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           multivorans ATCC 17616]
 gi|189352659|ref|YP_001948286.1| putative adenine-specific DNA-methyltransferase [Burkholderia
           multivorans ATCC 17616]
 gi|221212473|ref|ZP_03585450.1| DNA modification methylase RsrI [Burkholderia multivorans CGD1]
 gi|28971665|dbj|BAC65265.1| probable DNA-methyltransferasee [Burkholderia multivorans]
 gi|160345214|gb|ABX18299.1| DNA methylase N-4/N-6 domain protein [Burkholderia multivorans ATCC
           17616]
 gi|189336681|dbj|BAG45750.1| putative adenine-specific DNA-methyltransferase [Burkholderia
           multivorans ATCC 17616]
 gi|221167572|gb|EEE00042.1| DNA modification methylase RsrI [Burkholderia multivorans CGD1]
          Length = 283

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 126/250 (50%), Gaps = 33/250 (13%)

Query: 34  KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
           +LP  S+DLI ADPPY L   G+ Y  D           DK S  +A+  +TR WL    
Sbjct: 46  RLPDASIDLIVADPPYGL---GKDYGNDS----------DKRSG-DAFLEWTREWLELAI 91

Query: 94  RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
             LKP+G+++V  ++     I + L+     ++N+I+W +  P      RRF + H+ + 
Sbjct: 92  PKLKPSGSMYVFCTWQYAPEIFSFLKT-KLTMINEIIWDRRVPSMGGTTRRFTSVHDNIG 150

Query: 154 WASPSPKAKGYTFNYDAL---------KAANEDVQMRSDWLIPICSGSE-----RLRNKD 199
           + + S   K Y F+ D +         KA +  +   S WL    +  +     RL  + 
Sbjct: 151 FFAVS---KAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWSVSRLHRQH 207

Query: 200 GEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     +  R F+G E+ + Y 
Sbjct: 208 AERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVGYEINESYC 267

Query: 259 DIATKRIASV 268
            IA +R+ ++
Sbjct: 268 AIARERVHAL 277


>gi|238024260|ref|YP_002908492.1| DNA modification methylase [Burkholderia glumae BGR1]
 gi|237878925|gb|ACR31257.1| DNA modification methylase [Burkholderia glumae BGR1]
          Length = 282

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 123/246 (50%), Gaps = 33/246 (13%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           LP  S+DLI ADPPY L   G+ Y  D           DK    +A+ A+TR WL     
Sbjct: 46  LPDASIDLIVADPPYGL---GKDYGNDS----------DKLQG-DAHLAWTRQWLELAIP 91

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
            LK +G+L+V  ++     I + L+     ++N+I+W +  P      RR+ + H+ + +
Sbjct: 92  KLKASGSLYVFCTWQYAPEIFSFLKT-RLTMVNEIIWDRRVPSMGGTTRRYTSVHDNIGF 150

Query: 155 ASPSPKAKGYTFNYDAL---------KAANEDVQMRSDWLIPICSGSE-----RLRNKDG 200
            + S   K Y F+ D +         KA +  +   S WL    +  +     RL  +  
Sbjct: 151 FAVS---KSYYFDLDPVRIPYDAETKKARSRKLFEGSKWLELGYNPKDVWSISRLHRQHA 207

Query: 201 EKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           E++ HPTQKP  L+ R+++SS  PG ++LDPF GSGT+     +  R F+G E+ + Y  
Sbjct: 208 ERVDHPTQKPLELVERMVLSSCPPGGVVLDPFMGSGTTAVACARHGRGFVGYEINESYCA 267

Query: 260 IATKRI 265
           IA +R+
Sbjct: 268 IARERV 273


>gi|227544742|ref|ZP_03974791.1| adenine-specific methyltransferase [Lactobacillus reuteri CF48-3A]
 gi|300909012|ref|ZP_07126475.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus reuteri SD2112]
 gi|227185282|gb|EEI65353.1| adenine-specific methyltransferase [Lactobacillus reuteri CF48-3A]
 gi|300894419|gb|EFK87777.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus reuteri SD2112]
          Length = 319

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 127/275 (46%), Gaps = 51/275 (18%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KII G+S  V+ KL    VDL   DPPYNL          +   D +  S+ K S+ + 
Sbjct: 36  NKIINGDSFKVMTKLSPHQVDLALIDPPYNL----------NKQYDGL--SFKKMSTSQ- 82

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y A+T+ W+   + +LK N +++V   +     +  +L+  NF I N I W++     + 
Sbjct: 83  YQAYTQKWIDLLKPLLKENASIYVFSDWATSMALAPILEK-NFTIQNRITWQREKGRGSL 141

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ------MRSDWL--------- 185
           +   ++N  E + + + +P    YTFN D +K   + V       +  DW          
Sbjct: 142 KN--WKNGMEDIWFLTANPS--DYTFNVDQVKQRRQVVAPYRQDGVAKDWQATKNGNFRD 197

Query: 186 -----------IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
                      IP  S  E          HPTQKPE LL++I+++S+ P D I DPF GS
Sbjct: 198 TMPSNFWDDISIPYWSMPENTG-------HPTQKPEKLLAKIILASSNPNDFIFDPFAGS 250

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           G+S   A KL R ++GIE    Y      R+  ++
Sbjct: 251 GSSLVTAAKLNRRYLGIEQSLLYCAWGQYRLNQIK 285


>gi|62422064|gb|AAX82614.1| putative adenine-specific methyltransferase [Lactobacillus reuteri]
          Length = 319

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 127/275 (46%), Gaps = 51/275 (18%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KII G+S  V+ KL    VDL   DPPYNL          +   D +  S+ K S+ + 
Sbjct: 36  NKIINGDSFKVMTKLSPHQVDLALIDPPYNL----------NKQYDGL--SFKKMSTSQ- 82

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y A+T+ W+   + +LK N +++V   +     +  +L+  NF I N I W++     + 
Sbjct: 83  YQAYTQKWIDLLKPLLKENASIYVFSDWATSMALAPILEK-NFTIQNRITWQREKGRGSL 141

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ------MRSDWL--------- 185
           +   ++N  E + + + +P    YTFN D +K   + V       +  DW          
Sbjct: 142 KN--WKNGMEDIWFLTANPS--DYTFNVDQVKQRRQVVAPYRQDGVAKDWQATKNGNFRD 197

Query: 186 -----------IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
                      IP  S  E          HPTQKPE LL++I+++S+ P D I DPF GS
Sbjct: 198 TMPSNFWDDISIPYWSMPENTG-------HPTQKPEKLLAKIILASSNPNDFIFDPFAGS 250

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           G+S   A KL R ++GIE    Y      R+  ++
Sbjct: 251 GSSLVTAAKLNRRYLGIEQSLLYCAWGQYRLNQIK 285


>gi|127465|sp|P23192|MTM2_MORBO RecName: Full=Modification methylase MboII; Short=M.MboII; AltName:
           Full=Adenine-specific methyltransferase MboII; AltName:
           Full=DNA MTase MboIIA
 gi|44181|emb|CAA40297.1| methyltransferase MboII [Moraxella bovis]
          Length = 260

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 119/266 (44%), Gaps = 45/266 (16%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI + N    L+++  KSV L   DPPYNL                    WD F S   
Sbjct: 5   NKIHQMNCFDFLDQVENKSVQLAVIDPPYNLS----------------KADWDSFDSHNE 48

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           +  FT  W+      L  +G+L++  +  N   I   L +      N I W K + M + 
Sbjct: 49  FLPFTYRWIDKVLDKLDKDGSLYIFNTPFNCAFICQYLVSKGMIFQNWITWDKRDGMGSA 108

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---VQMRSD-------------- 183
           + R F    ET+++ S   K+K +TFNYD ++   E    ++  S+              
Sbjct: 109 K-RGFSTGQETILFFS---KSKNHTFNYDEVRVPYESTDRIKHASEKGILKNGKRWFPNP 164

Query: 184 --------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
                   W        E++  K  +  H T KP  L+ RI+ +S+ P D++LD F GSG
Sbjct: 165 NGRLCGEVWHFSSQRHKEKVNGKTVKLTHITPKPRDLIERIIRASSNPNDLVLDCFMGSG 224

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIA 261
           T+  VAKKL R+FIG +M  +Y++ A
Sbjct: 225 TTAIVAKKLGRNFIGCDMNAEYVNQA 250


>gi|170703050|ref|ZP_02893876.1| DNA methylase N-4/N-6 domain protein [Burkholderia ambifaria
           IOP40-10]
 gi|170132042|gb|EDT00544.1| DNA methylase N-4/N-6 domain protein [Burkholderia ambifaria
           IOP40-10]
          Length = 283

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 124/247 (50%), Gaps = 33/247 (13%)

Query: 34  KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
           +LP  S+DLI ADPPY L   G+ Y  D           DK S  + + A+TR WL    
Sbjct: 46  RLPDASIDLIVADPPYGL---GKDYGNDS----------DKRSG-DVFLAWTREWLELAI 91

Query: 94  RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
             LKP+G++++  ++     I + L+     ++N+I+W +  P      RRF + H+ + 
Sbjct: 92  PKLKPSGSMYIFCTWQYAPEIFSFLKT-KLTMVNEIIWDRRVPSMGGTTRRFTSVHDNIG 150

Query: 154 WASPSPKAKGYTFNYDAL---------KAANEDVQMRSDWLIPICSGSE-----RLRNKD 199
           + + S   K Y F+ D +         KA +  +   S WL    +  +     RL  + 
Sbjct: 151 FFAVS---KAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWSVSRLHRQH 207

Query: 200 GEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     +  R F+G E+ + Y 
Sbjct: 208 AERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVGYEINESYC 267

Query: 259 DIATKRI 265
            IA +R+
Sbjct: 268 AIAHERV 274


>gi|107026752|ref|YP_624263.1| DNA methylase N-4/N-6 [Burkholderia cenocepacia AU 1054]
 gi|116692056|ref|YP_837589.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           cenocepacia HI2424]
 gi|170735951|ref|YP_001777211.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           cenocepacia MC0-3]
 gi|105896126|gb|ABF79290.1| DNA methylase N-4/N-6 [Burkholderia cenocepacia AU 1054]
 gi|116650056|gb|ABK10696.1| DNA methylase N-4/N-6 domain protein [Burkholderia cenocepacia
           HI2424]
 gi|169818139|gb|ACA92721.1| DNA methylase N-4/N-6 domain protein [Burkholderia cenocepacia
           MC0-3]
          Length = 283

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 126/249 (50%), Gaps = 33/249 (13%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           LP  S+DLI ADPPY L   G+ Y  D           DK S  + + A+TR WL     
Sbjct: 47  LPDASIDLIVADPPYGL---GKDYGNDS----------DKRSG-DDFLAWTRGWLELAIP 92

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
            LKP+G++++  ++     I + L+     ++N+I+W +  P      RRF + H+ + +
Sbjct: 93  KLKPSGSMYIFCTWQYAPEIFSFLKT-QLTMVNEIIWDRRVPSMGGTTRRFTSVHDNIGF 151

Query: 155 ASPSPKAKGYTFNYDAL---------KAANEDVQMRSDWLIPICSGSE-----RLRNKDG 200
            + S   K Y F+ D +         KA +  +   S WL    +  +     RL  +  
Sbjct: 152 FAVS---KAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWSVSRLHRQHA 208

Query: 201 EKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     +  R F+G E+ + Y  
Sbjct: 209 ERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVGYEINESYCA 268

Query: 260 IATKRIASV 268
           IA +R++++
Sbjct: 269 IAHERVSAL 277


>gi|156743626|ref|YP_001433755.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156234954|gb|ABU59737.1| DNA methylase N-4/N-6 domain protein [Roseiflexus castenholzii DSM
           13941]
          Length = 332

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 131/275 (47%), Gaps = 56/275 (20%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G++I+ L  L  +SVD+IFADPPYN++                   WD F S E Y  ++
Sbjct: 61  GDTIAWLRSLETESVDMIFADPPYNIR----------------KAEWDTFESQEEYVEWS 104

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
             W+    RVLKP+GTL++ G +  I     +  +  F     ++W   N   N  G  +
Sbjct: 105 LLWIREAARVLKPDGTLYICG-FSEIIADLKLPASRFFKGCRWLIWHYKNKA-NL-GSDW 161

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR--------------------SDW- 184
             +HE+++      K+K +TFN D ++    +  ++                    S W 
Sbjct: 162 GRSHESILHFR---KSKNFTFNIDDVRIPYGNHTLKYPEHPQAETSQYGKGNGRKNSIWQ 218

Query: 185 ----------LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
                     +I I +    +  K     HPTQKPE LL +++++S+  GD+I+DPF GS
Sbjct: 219 PHPRGAKPRDVIEIPTTCNGMHEKTP---HPTQKPEELLRKLVLASSNVGDLIVDPFLGS 275

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           GT+  VA++LRR++ G ++  +Y     +RI  V+
Sbjct: 276 GTTAVVAEQLRRNWKGCDISLEYCRWTVRRIELVE 310


>gi|171321986|ref|ZP_02910869.1| DNA methylase N-4/N-6 domain protein [Burkholderia ambifaria MEX-5]
 gi|171092716|gb|EDT38001.1| DNA methylase N-4/N-6 domain protein [Burkholderia ambifaria MEX-5]
          Length = 283

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 124/247 (50%), Gaps = 33/247 (13%)

Query: 34  KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
           +LP  S+DLI ADPPY L   G+ Y  D           DK S  + + A+TR WL    
Sbjct: 46  RLPDASIDLIVADPPYGL---GKDYGNDS----------DKRSG-DVFLAWTREWLELAI 91

Query: 94  RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
             LKP+G++++  ++     I + L+     ++N+I+W +  P      RRF + H+ + 
Sbjct: 92  PKLKPSGSMYIFCTWQYAPEIFSFLKT-KLTMVNEIIWDRRVPSMGGTTRRFTSVHDNIG 150

Query: 154 WASPSPKAKGYTFNYDAL---------KAANEDVQMRSDWLIPICSGSE-----RLRNKD 199
           + + S   K Y F+ D +         KA +  +   S WL    +  +     RL  + 
Sbjct: 151 FFAVS---KAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWSVSRLHRQH 207

Query: 200 GEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     +  R F+G E+ + Y 
Sbjct: 208 AERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVGYEINESYC 267

Query: 259 DIATKRI 265
            IA +R+
Sbjct: 268 AIAHERV 274


>gi|268683469|ref|ZP_06150331.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae SK-92-679]
 gi|268623753|gb|EEZ56153.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae SK-92-679]
          Length = 152

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 52/123 (42%), Positives = 72/123 (58%), Gaps = 1/123 (0%)

Query: 31  VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
           +LEK P    D+IFADPPY L  +G     +  +V     +WDK     A   F   WL 
Sbjct: 31  ILEKHPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGMAADLEFYEEWLR 89

Query: 91  ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
            C  +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP PN   R F ++ E
Sbjct: 90  LCYALLKPNGTIWVCGTFHNIYLIGYLMQTVGYHILNNITWEKPNPPPNLSCRFFTHSTE 149

Query: 151 TLI 153
           T++
Sbjct: 150 TIL 152


>gi|240013323|ref|ZP_04720236.1| putative modification methylase DpnIIB [Neisseria gonorrhoeae
           DGI18]
 gi|240120394|ref|ZP_04733356.1| putative modification methylase DpnIIB [Neisseria gonorrhoeae
           PID24-1]
 gi|240127400|ref|ZP_04740061.1| putative modification methylase DpnIIB [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268685774|ref|ZP_06152636.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|268626058|gb|EEZ58458.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
          Length = 161

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 52/123 (42%), Positives = 72/123 (58%), Gaps = 1/123 (0%)

Query: 31  VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
           +LEK P    D+IFADPPY L  +G     +  +V     +WDK     A   F   WL 
Sbjct: 40  ILEKHPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGMAADLEFYEEWLR 98

Query: 91  ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
            C  +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP PN   R F ++ E
Sbjct: 99  LCYALLKPNGTIWVCGTFHNIYLIGYLMQTVGYHILNNITWEKPNPPPNLSCRFFTHSTE 158

Query: 151 TLI 153
           T++
Sbjct: 159 TIL 161


>gi|317176865|dbj|BAJ54654.1| adenine specific DNA methyltransferase [Helicobacter pylori F16]
          Length = 209

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 106/223 (47%), Gaps = 23/223 (10%)

Query: 45  ADPPYNLQLNGQLYRPDHSLVDAVT-DSWDK-FSSFEAYDAFTRAWLLACRRVLKPNGTL 102
            DPPYN+ +         +    +    WDK F   E        W+     ++ PNG +
Sbjct: 5   TDPPYNISVKNNFSTLKSAKRQGIDFGEWDKNFRLLE--------WIKRYAPLVNPNGCM 56

Query: 103 WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
            +  SY  I  I   L+   F + + I W K+NPM     R +    E  +WA    KAK
Sbjct: 57  VIFCSYRFINYIADFLEENGFIVKDFIQWIKNNPMSKNINRCYVQDTEFALWAVKK-KAK 115

Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK 222
            + FN    K  NE          P+ SG E+++       HPTQK  AL+ +I+   T 
Sbjct: 116 -WVFN----KPKNEKYLRPLILKSPVVSGLEKVK-------HPTQKSLALMEKIISIHTN 163

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           P DI+LDPF GSGT+G   K L R+FIGIE +++Y  IA KR+
Sbjct: 164 PNDIVLDPFMGSGTTGLACKNLERNFIGIESEKEYFQIAKKRL 206


>gi|240124888|ref|ZP_04737774.1| putative modification methylase [Neisseria gonorrhoeae SK-92-679]
          Length = 125

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 52/123 (42%), Positives = 72/123 (58%), Gaps = 1/123 (0%)

Query: 31  VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
           +LEK P    D+IFADPPY L  +G     +  +V     +WDK     A   F   WL 
Sbjct: 4   ILEKHPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGMAADLEFYEEWLR 62

Query: 91  ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
            C  +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP PN   R F ++ E
Sbjct: 63  LCYALLKPNGTIWVCGTFHNIYLIGYLMQTVGYHILNNITWEKPNPPPNLSCRFFTHSTE 122

Query: 151 TLI 153
           T++
Sbjct: 123 TIL 125


>gi|283778311|ref|YP_003369066.1| DNA methylase N-4/N-6 domain-containing protein [Pirellula staleyi
           DSM 6068]
 gi|283436764|gb|ADB15206.1| DNA methylase N-4/N-6 domain protein [Pirellula staleyi DSM 6068]
          Length = 295

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 127/281 (45%), Gaps = 54/281 (19%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +++I+G+ ++ L  LPA  VDL FADPP+N+  +               D +D   + + 
Sbjct: 7   NQLIQGDCVAGLASLPAGCVDLAFADPPFNIGYD--------------YDEYDDRRATDD 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           Y  +   WL    RVLKP+GT W+ IG  +       M +       + +VW  +  + N
Sbjct: 53  YLTWCDQWLAEVSRVLKPDGTFWLAIGDEYAAELKVAMQRQHGLHCRSWVVWYYTFGV-N 111

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA------------ANEDVQMRSD---- 183
            + + F  +H  L      PK   +TFN D ++             AN   ++  D    
Sbjct: 112 CKAK-FSRSHAHLFHMVKDPKK--FTFNVDEIRVPSARQLVYADNRANPKGRLPDDTWIL 168

Query: 184 ---------------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
                          W  P  +G+ + R       H  Q PE LL RI+ +++ PG+++L
Sbjct: 169 RPQDLPDGFQPDDDTWYFPRVAGTFKER----AGWHGCQMPEQLLGRIIKATSNPGELVL 224

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           DPF GSGT+  VAKKL R ++G E+ ++Y    T R+   +
Sbjct: 225 DPFSGSGTTLVVAKKLGRKYLGFELSKEYAARVTDRLKETK 265


>gi|172062886|ref|YP_001810537.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           ambifaria MC40-6]
 gi|171995403|gb|ACB66321.1| DNA methylase N-4/N-6 domain protein [Burkholderia ambifaria
           MC40-6]
          Length = 283

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 124/247 (50%), Gaps = 33/247 (13%)

Query: 34  KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
           +LP  S+DLI ADPPY L   G+ Y  D           DK S  + + A+TR WL    
Sbjct: 46  RLPDASIDLIVADPPYGL---GKDYGNDS----------DKRSG-DDFLAWTREWLELAI 91

Query: 94  RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
             LKP+G++++  ++     I + L+     ++N+I+W +  P      RRF + H+ + 
Sbjct: 92  PKLKPSGSMYIFCTWQYAPEIFSFLKT-QLTMVNEIIWDRRVPSMGGTTRRFTSVHDNIG 150

Query: 154 WASPSPKAKGYTFNYDAL---------KAANEDVQMRSDWLIPICSGSE-----RLRNKD 199
           + + S   K Y F+ D +         KA +  +   S WL    +  +     RL  + 
Sbjct: 151 FFAVS---KAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWSVSRLHRQH 207

Query: 200 GEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     +  R F+G E+ + Y 
Sbjct: 208 AERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVGYEINESYC 267

Query: 259 DIATKRI 265
            IA +R+
Sbjct: 268 AIAHERV 274


>gi|224538890|ref|ZP_03679429.1| hypothetical protein BACCELL_03786 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519497|gb|EEF88602.1| hypothetical protein BACCELL_03786 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 262

 Score =  106 bits (265), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 131/282 (46%), Gaps = 57/282 (20%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           E+ +KI   + +++ E LP KSV L+   PPYN+ +          LV++    +     
Sbjct: 2   EYTNKIFNHSCLNMSE-LPDKSVSLMVTSPPYNINIEYGNKWDKGKLVESKGKKYIDNLE 60

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN----FWIL------- 126
            E Y       +   +RVLK +G +W        F I    +N      FW++       
Sbjct: 61  EEEYRTMLSVVIEETKRVLKDDGEIW--------FNIKNRYKNEEIIPPFWVMEFFKDMY 112

Query: 127 --NDIVWRKSNPMPNF-----RGRRFQNAHETLIWASPSPKAKG-YTFNYDALKAANEDV 178
             N I+W       NF       +RF + +E + + +   K KG YTFN + +K     +
Sbjct: 113 LKNIIIW-------NFDWGGSTNKRFCSRYEYVFFFT---KKKGDYTFNLEDVKIP--AL 160

Query: 179 QMRSD------------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
             R D            W I + SG+   R +     HP Q PE L+ RI+   T PGD+
Sbjct: 161 NYRPDRYKSQLKNPTDVWNISLVSGNSPERTE-----HPAQYPEELIERIIKVGTNPGDL 215

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +LDPF GSGT+  VAKKL R+++G E++ D+I IA  R+ +V
Sbjct: 216 VLDPFMGSGTTAVVAKKLGRNYVGYEIEPDFIKIAENRLNNV 257


>gi|115358100|ref|YP_775238.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           ambifaria AMMD]
 gi|115283388|gb|ABI88904.1| DNA methylase N-4/N-6 domain protein [Burkholderia ambifaria AMMD]
          Length = 283

 Score =  106 bits (265), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 124/247 (50%), Gaps = 33/247 (13%)

Query: 34  KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
           +LP  S+DLI ADPPY L   G+ Y  D           DK S  + + A+TR WL    
Sbjct: 46  RLPDASIDLIVADPPYGL---GKDYGNDS----------DKRSG-DDFLAWTREWLELAI 91

Query: 94  RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
             LKP+G++++  ++     I + L+     ++N+I+W +  P      RRF + H+ + 
Sbjct: 92  PKLKPSGSMYIFCTWQYAPEIFSFLKT-QLTMVNEIIWDRRVPSMGGTTRRFTSVHDNIG 150

Query: 154 WASPSPKAKGYTFNYDAL---------KAANEDVQMRSDWLIPICSGSE-----RLRNKD 199
           + + S   K Y F+ D +         KA +  +   S WL    +  +     RL  + 
Sbjct: 151 FFAVS---KAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWSVSRLHRQH 207

Query: 200 GEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     +  R F+G E+ + Y 
Sbjct: 208 AERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVGYEINESYC 267

Query: 259 DIATKRI 265
            IA +R+
Sbjct: 268 AIAHERV 274


>gi|58865222|emb|CAA65779.2| site-specific DNA-methyltransferase [Geobacillus
           stearothermophilus]
          Length = 226

 Score =  106 bits (265), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 113/241 (46%), Gaps = 35/241 (14%)

Query: 37  AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-------SWD-KFSSFEAYDAFTRAW 88
            + +DLI ADPPY +          H++ D           +WD +F + E        W
Sbjct: 9   GECIDLIIADPPYVVSKESNF----HTMRDRKNQRTGTHFGNWDIEFDNNE--------W 56

Query: 89  LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
           +    +VLKP G+L V   +     I  + +   F   + ++W K+NPMP  R RR+   
Sbjct: 57  ISFAYKVLKPGGSLIVFNDFKKATIIYDIAERCGFEYKDTLIWHKTNPMPRNRDRRYIPN 116

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
            E + W     K   +TFN    K     +   S+      SG         ++ HPTQK
Sbjct: 117 VEMIQWYVKKGK---WTFNRQNEKYEGCILSYPSE------SGG------GFKRYHPTQK 161

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           P  L+  ++   +   DIILDPF GSGT+G  +  L R+FIG E+ ++Y+ IA +RI ++
Sbjct: 162 PVKLIEYLIRIHSNENDIILDPFMGSGTTGVASLNLNRNFIGFEINEEYVQIANERIKNI 221

Query: 269 Q 269
           Q
Sbjct: 222 Q 222


>gi|124003829|ref|ZP_01688677.1| adenine-specific DNA methylase [Microscilla marina ATCC 23134]
 gi|123990884|gb|EAY30351.1| adenine-specific DNA methylase [Microscilla marina ATCC 23134]
          Length = 403

 Score =  106 bits (265), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 85/281 (30%), Positives = 134/281 (47%), Gaps = 42/281 (14%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +K+ +G+ I +L KL A SVDL++ DPP+  Q N  L   D S     +D W    S ++
Sbjct: 4   NKLYQGHCIEILRKLEADSVDLVYFDPPFFTQKNHTLTNRDGSKKYQFSDHW---KSLDS 60

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN---DIVWRKSNPM 137
           Y       L+  RRVLK +G++++         I T+L  + F + N   +I+W      
Sbjct: 61  YLVLIEGCLIESRRVLKNSGSVFLHCDKTVSHHIRTVLDKV-FGVKNFRSEIIWSYKRWS 119

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNY----------------DALKAANEDVQMR 181
            + +G    NAH+ + + S   K K + FN                 +  K AN     +
Sbjct: 120 NSKKG--LLNAHQNIYFYS---KTKEFKFNQYYTDYAPSTNVDQILQERKKTANGKSVYK 174

Query: 182 SDWLIPICSGSER-------------LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDII 227
           +D    +  G E+             L  K  E++ +PTQKP  LL +IL   +  GD+I
Sbjct: 175 TDDSGKVILGKEKKGVPLSDVWEIPYLNPKAKERVGYPTQKPVLLLKQILNVGSNKGDLI 234

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +DPF GSGT+   AK L R+FIGI+  ++ I +A +R+  +
Sbjct: 235 VDPFCGSGTTCVAAKSLERNFIGIDSSEEAISLANQRLQDM 275


>gi|317179830|dbj|BAJ57616.1| Type IIS restriction enzyme M1 protein [Helicobacter pylori F32]
          Length = 260

 Score =  106 bits (264), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 122/263 (46%), Gaps = 44/263 (16%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   +  + L+KL  KSVDL   DPPYNL++                 SWD F + E 
Sbjct: 4   NKIYIEDVFTFLDKLEDKSVDLAIIDPPYNLKIA----------------SWDSFKNDEE 47

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           +  F+ AW+      LK  G+ ++  +  N       L +     LN I W K +   N 
Sbjct: 48  FLTFSYAWIDKMLPKLKDTGSFYIFNTPFNCALFLAYLHHKKVHFLNFITWVKKDGFANA 107

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ----------MRSD------- 183
           + +R+  A E++++ S     K YTFN D ++ A E  +          ++++       
Sbjct: 108 K-KRYNPAQESILFYSMH--KKNYTFNADEVRIAYESTERIKHAQSKGILKNNKRWFPNP 164

Query: 184 --------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
                   W I      E+ + K  +  HP+ KP+AL+ R++ +S+   D+ILD F GSG
Sbjct: 165 KGKLCLDVWEIASQRHVEKEKGKILKPKHPSIKPKALIERMIKASSHKNDLILDLFSGSG 224

Query: 236 TSGAVAKKLRRSFIGIEMKQDYI 258
            +  VAK L R+FIG E   +Y+
Sbjct: 225 MTSLVAKSLGRNFIGCESHAEYV 247


>gi|312868808|ref|ZP_07728997.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus oris PB013-T2-3]
 gi|311095651|gb|EFQ53906.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus oris PB013-T2-3]
          Length = 321

 Score =  106 bits (264), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 125/274 (45%), Gaps = 49/274 (17%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSF 78
           +D+ I G+S  ++ + P +  DL   DPPYNL              D   D  + K  S 
Sbjct: 39  RDRSINGDSFQLVRQFPDQFADLALVDPPYNL--------------DKHYDGLNFKHQST 84

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           + Y  +T+ W+   +  LKP+ +L+V   +     +  +L   NF + N I W++     
Sbjct: 85  DEYQEYTQRWIDLVKPKLKPHASLYVFADWQTSIALAPVLA-ANFTVKNRITWQREKG-- 141

Query: 139 NFRGRR--FQNAHETLIWASPSPKAKGYTFNYDALK------AANEDVQMRSDWLIPICS 190
             RG +  ++N  E + + +   K   YTFN D +K      A   +     DW     S
Sbjct: 142 --RGAKGNWKNGMEDIWFLTMDDKK--YTFNVDQVKQRRQVIAPYRENGQAKDWH---ES 194

Query: 191 GSERLRNKDGEKL----------------HPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
            + R R+                      HPTQKPE LL++++++S+ PGD ILDPF G+
Sbjct: 195 AAGRFRDTMPSNFWDDISIPYWSMAENTGHPTQKPEKLLAKLILASSNPGDTILDPFAGA 254

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           G+S   AKKL R F+G+E  + Y      R+ + 
Sbjct: 255 GSSLVTAKKLGRHFVGVEQSRLYTAWGVYRLQAA 288


>gi|291295897|ref|YP_003507295.1| DNA methylase N-4/N-6 domain-containing protein [Meiothermus ruber
           DSM 1279]
 gi|290470856|gb|ADD28275.1| DNA methylase N-4/N-6 domain protein [Meiothermus ruber DSM 1279]
          Length = 286

 Score =  106 bits (264), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 129/290 (44%), Gaps = 62/290 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ--------------------LNGQLYRPD 61
           +I++   +  +  LP  S  LI+ DPP+N +                      G+ YR +
Sbjct: 3   RIVQAECLDYIRTLPEASFPLIYLDPPFNTRKTQQRRRIRAVADEQGSRRGFGGKRYRTE 62

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
                   D +D F  F       R  L    R+L PNG+L+V   Y  +  +  +L  +
Sbjct: 63  ALEAPVYPDRYDDFVEF------LRPRLEQAYRLLTPNGSLFVHLDYREVHYVKVLLDQI 116

Query: 122 --NFWILNDIVWRKSNPMPNFRGR---RFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
                 +N+I+W       ++ GR   R+   H+TL+W +  P+   YTFNY+A+     
Sbjct: 117 FGRKSFINEIIWAY-----DYGGRSKKRWPAKHDTLLWYAKHPQK--YTFNYEAID---- 165

Query: 177 DVQMRSDWLIPICSGSER---------------LRNKDGEKL-HPTQKPEALLSRILVSS 220
               R  +L P  +G E+               +     EK  +PTQKP  LL RI+   
Sbjct: 166 ----RIPYLAPKMAGPEKASRGKTPTDVWWMTIVPTSSKEKTGYPTQKPLRLLERIVRVH 221

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
           + PG+++LD F GSGT+G  A +  R F+ ++   D + +  +R+A+ +P
Sbjct: 222 SNPGEVVLDFFAGSGTTGEAAARNGRGFLLVDQSPDAVAVMRRRLAAFEP 271


>gi|206562848|ref|YP_002233611.1| putative DNA methylase [Burkholderia cenocepacia J2315]
 gi|198038888|emb|CAR54850.1| putative DNA methylase [Burkholderia cenocepacia J2315]
          Length = 283

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 126/249 (50%), Gaps = 33/249 (13%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           LP  S+DLI ADPPY L   G+ Y  D           DK S  + + A+TR WL     
Sbjct: 47  LPDASIDLIVADPPYGL---GKDYGNDS----------DKRSG-DDFLAWTREWLDLAIP 92

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
            LKP+G++++  ++     I + L+     ++N+I+W +  P      RRF + H+ + +
Sbjct: 93  KLKPSGSMYIFCTWQYAPEIFSFLKT-KLTMVNEIIWDRRVPSMGGTTRRFTSVHDNIGF 151

Query: 155 ASPSPKAKGYTFNYDAL---------KAANEDVQMRSDWLIPICSGSE-----RLRNKDG 200
            + S   K Y F+ D +         KA +  +   S WL    +  +     RL  +  
Sbjct: 152 FAVS---KAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWSVSRLHRQHA 208

Query: 201 EKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     +  R F+G E+ + Y  
Sbjct: 209 ERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVGYEINESYCA 268

Query: 260 IATKRIASV 268
           IA +R++++
Sbjct: 269 IAHERVSAL 277


>gi|149174979|ref|ZP_01853603.1| adenine-specific methyltransferase [Planctomyces maris DSM 8797]
 gi|148846316|gb|EDL60655.1| adenine-specific methyltransferase [Planctomyces maris DSM 8797]
          Length = 306

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 135/296 (45%), Gaps = 59/296 (19%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           + I+ +++L A+S+DL FADPP+N+      Y              D+  S E Y  +  
Sbjct: 11  DCIAGMQELEAESIDLAFADPPFNIGYEYDQYE-------------DRLES-EQYLDWCN 56

Query: 87  AWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
            WL    R+LKP+GT W+ IG  +       M + L     + ++W  +  + N + + F
Sbjct: 57  LWLKEVVRLLKPDGTFWLAIGDEYAAELKVMMQRELGLTCRSWVIWYYTFGV-NCKNK-F 114

Query: 146 QNAHETLIWASPSPKAKGYTFNYD--------------ALKAAN---------------- 175
             +H  L +    PK   +TFN D                K AN                
Sbjct: 115 SRSHAHLFYMVKDPKQ--FTFNADDPAIRIPSARQLVYGDKRANPKGRLPDDTWILRPQD 172

Query: 176 --EDVQMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
             E  Q   D W  P  +G+ + R    +  H  Q PE LL RI+ + + P +++LDPF 
Sbjct: 173 IPESFQSEEDTWYFPRINGTFKER----QGWHGCQMPEQLLGRIIRACSHPEEVVLDPFS 228

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV---QPLGNIELTVLTGKRTE 285
           GSGT+ AVAKKL R F+G E+ ++Y   A +R+A +   QPL   E  +++   T+
Sbjct: 229 GSGTTLAVAKKLERQFVGFELSEEYGARAQQRLAEIKPGQPLDGTENPLVSAPTTK 284


>gi|163816177|ref|ZP_02207545.1| hypothetical protein COPEUT_02361 [Coprococcus eutactus ATCC 27759]
 gi|158448597|gb|EDP25592.1| hypothetical protein COPEUT_02361 [Coprococcus eutactus ATCC 27759]
          Length = 237

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 127/249 (51%), Gaps = 27/249 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+   N++  +++LP  S+DLI  DPPYNL    Q  R +  L +  T + +K + +++ 
Sbjct: 10  KLFNENNLDFMKRLPDSSIDLILTDPPYNL---SQFSRGNIHLNNGKTIN-NKIAEWDSI 65

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPN 139
                 ++    R++KP G +++  SY     +G      N  F      VW K+ P  +
Sbjct: 66  PLNPNDYIEPFTRIIKPTGNIFIFTSYS---LLGKWYDAFNPLFSTFQIFVWHKTTPTQS 122

Query: 140 FRGRRFQNAHETLI--WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                F N+ E ++  W       KG+T+N+     +++D QM + +  P C   E++ +
Sbjct: 123 VYHNSFLNSCELVVCLWN------KGHTWNF-----SSQD-QMHNFFECPSCMFPEKIIS 170

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
                 HPTQKP  L+  +L+ S+ P DII DPF G GT+G  A K  R FIGI++ + Y
Sbjct: 171 PK----HPTQKPLELIEHLLLISSNPNDIIFDPFMGVGTTGEAALKNNRRFIGIDIDEKY 226

Query: 258 IDIATKRIA 266
           +  + KR++
Sbjct: 227 VKASLKRLS 235


>gi|163846243|ref|YP_001634287.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222523998|ref|YP_002568468.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus sp.
           Y-400-fl]
 gi|163667532|gb|ABY33898.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222447877|gb|ACM52143.1| DNA methylase N-4/N-6 domain protein [Chloroflexus sp. Y-400-fl]
          Length = 337

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 128/272 (47%), Gaps = 51/272 (18%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G++I+ L  L  +SVD+IFADPPYN++                   WD F S  AY  ++
Sbjct: 67  GDAIAWLRSLETESVDMIFADPPYNIR----------------KAEWDSFESQAAYVEWS 110

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
             W+    RVLKP GTL++ G +  I     +  +  F     ++W   N   N  G+ +
Sbjct: 111 LEWISEAARVLKPTGTLYICG-FSEIIADLKLPASRFFKGCRWLIWHYKNKA-NL-GKDW 167

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-- 203
             +HE+++      K + +TFN D ++       ++     P    S+  R +  + +  
Sbjct: 168 GRSHESILHFR---KDRQFTFNIDDIRIPYGHHTLKYP-DHPQAETSQYSRGRRRQAVWR 223

Query: 204 --------------------------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                                     HPTQKPE LL +++++S+  GD+I+DPF GSGT+
Sbjct: 224 PHPRGAKPRDVLEIPTTCNGMHEKTPHPTQKPEELLRKLVLASSNVGDVIVDPFLGSGTT 283

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
             VA++L+R + G ++  +Y   A +RI  V+
Sbjct: 284 AVVAEQLKRRWKGCDISLEYCQWAVQRIELVE 315


>gi|228470286|ref|ZP_04055190.1| DNA methylase [Porphyromonas uenonis 60-3]
 gi|228308029|gb|EEK16904.1| DNA methylase [Porphyromonas uenonis 60-3]
          Length = 285

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/262 (32%), Positives = 129/262 (49%), Gaps = 33/262 (12%)

Query: 21  DKIIKGNSISVL-EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +KII G+++  L E +   SVDL+FADPPYN+  N               D WD   S E
Sbjct: 7   NKIIHGDALQALSECISDNSVDLVFADPPYNIGKN----------FAGCLDKWD---SDE 53

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           +Y  +  +WL  C + LKP G L+V+ S   +      L+     IL+ IVW   +    
Sbjct: 54  SYLRWCYSWLDLCIQKLKPTGALYVMTSTQFMPYFDLYLRE-RLDILSRIVWSYDSSGVQ 112

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNY-DALKAANED-----VQMRSDWLIPICSGS- 192
            + R F + +E +++       + YTFN  D L  A        +  R +   P  +   
Sbjct: 113 AK-RYFGSLYEPILFCVKD--KRQYTFNASDILVEAKTGAKRGLIDYRKNPPQPYSTTKV 169

Query: 193 -------ERLRNKDGE-KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
                   R+R +  E + HPTQKP  LL RI+ +S+  GD++LDPF G+ T+  VA  L
Sbjct: 170 PGNVWEFTRVRYRMPEYENHPTQKPIELLERIIKASSNEGDVVLDPFSGTFTTSYVASLL 229

Query: 245 RRSFIGIEMKQDYIDIATKRIA 266
            R  IGIE++++Y+ I  +R+ 
Sbjct: 230 HRKSIGIELQEEYVKIGLRRLG 251


>gi|166368612|ref|YP_001660885.1| putative methyltransferase [Microcystis aeruginosa NIES-843]
 gi|166090985|dbj|BAG05693.1| DNA-methyltransferase [Microcystis aeruginosa NIES-843]
          Length = 295

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/259 (32%), Positives = 130/259 (50%), Gaps = 33/259 (12%)

Query: 23  IIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           I  G+S+ +L  ++ + SVDLIF DPPYN+   G+ +           D +DK+ S   Y
Sbjct: 12  IFHGDSLPILSSEIASNSVDLIFLDPPYNI---GKHF----------ADFYDKWESENDY 58

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    L  C R+LKP GTL+V+ S   +      L+     IL+ I+W   +      
Sbjct: 59  INWANQILDQCLRILKPQGTLYVMASTQAMPYFDLYLRQ-KMTILSRIIWHYDSSGVQ-A 116

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS--DW--LIPICSGSE---- 193
            + F + +E ++          YTFN   +K   +    R   D+   IP    +E    
Sbjct: 117 TKYFGSMYEPILHCVKD--KNNYTFNSKDIKIEAKTGAKRKLIDYRKAIPSQYNTEKVPG 174

Query: 194 ------RLRNK-DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R + D  + HP+QKPE+LL RI+++ST    I+LDPF G+ T+ AVAK+L R
Sbjct: 175 NVWYFPRVRYRMDEYENHPSQKPESLLERIILASTDKSGIVLDPFAGTFTAAAVAKRLGR 234

Query: 247 SFIGIEMKQDYIDIATKRI 265
             I IE +++Y+ I  +RI
Sbjct: 235 ISISIESQEEYLKIGLRRI 253


>gi|17231903|ref|NP_488451.1| putative methyltransferase [Nostoc sp. PCC 7120]
 gi|17133547|dbj|BAB76110.1| DNA-methyltransferase [Nostoc sp. PCC 7120]
          Length = 295

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 133/259 (51%), Gaps = 33/259 (12%)

Query: 23  IIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +  G+++++L   +P++SVDLIF DPPYN+   G+ +   H          DK+ S E Y
Sbjct: 12  LFHGDALNILSSNIPSESVDLIFIDPPYNI---GKHFSNFH----------DKWESEEEY 58

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +   WL  C RVLK +GT++V+ S   +      L+     IL+ IVW   +      
Sbjct: 59  ANWAYKWLDECIRVLKSHGTIYVMTSTQAMPYFDIYLRQ-KLTILSRIVWHYDSSGVQ-A 116

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS--DW--LIPICSGSE---- 193
            + F + +E ++    +     Y FN + +K   +    R   D+   +P    +E    
Sbjct: 117 TKYFGSMYEPILHCVKN--KSNYIFNSEEIKIEAKTGAQRKLIDYRKAVPAPYNTEKVPG 174

Query: 194 ------RLRNKDGE-KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 R+R +  E + HP+QKPE+L+ RI++SS+    ++LDPF G+ T  +VAK+L R
Sbjct: 175 NVWYFSRVRYRMPEYENHPSQKPESLIERIILSSSNEDSLVLDPFAGTFTVASVAKRLGR 234

Query: 247 SFIGIEMKQDYIDIATKRI 265
             I IE +++Y+ I  +R+
Sbjct: 235 KSISIESQEEYLKIGLRRV 253


>gi|187921472|ref|YP_001890504.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           phytofirmans PsJN]
 gi|187719910|gb|ACD21133.1| DNA methylase N-4/N-6 domain protein [Burkholderia phytofirmans
           PsJN]
          Length = 301

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 139/280 (49%), Gaps = 34/280 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +++  + ++ +  +P  S+DLI  DPPY L   G+ Y  D  +            + E +
Sbjct: 38  QLLNRDFLTDVANIPDGSIDLIVCDPPYGL---GKDYGNDSDM-----------RTGEDF 83

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+TR WL      LKP+G+L++  ++     I + L+     ++N+I+W +  P     
Sbjct: 84  LAWTRGWLELAIPKLKPSGSLYIFCTWQYAPEIFSFLKT-KLTMINEIIWDRRVPSMGGT 142

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALK----AANEDVQMR-----SDWLIPICSGS 192
            RRF + H+ + + + S   K Y F+ D ++    AA +  + R     S WL    +  
Sbjct: 143 VRRFTSVHDNIGFFAVS---KDYFFDLDPVRIPYDAATKKARSRKLFEGSKWLEVGYNPK 199

Query: 193 E-----RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           +     RL  +  E++ HPTQKP  ++ R++++S   G  +LDPF GSGT+     + +R
Sbjct: 200 DVWSVSRLHRQHAERVAHPTQKPLEIVERMVLASCPKGGRVLDPFMGSGTTAVACARQQR 259

Query: 247 SFIGIEMKQDYIDIATKRI-ASVQPLGNIELTVLTGKRTE 285
            F+G E+ + Y  IA +R+ A+  P     +   T ++TE
Sbjct: 260 EFVGYEINESYCAIARERVSAAANPPVARRVKAKTQRQTE 299


>gi|78062971|ref|YP_372879.1| DNA methylase N-4/N-6 [Burkholderia sp. 383]
 gi|77970856|gb|ABB12235.1| DNA methylase N-4/N-6 [Burkholderia sp. 383]
          Length = 283

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 123/246 (50%), Gaps = 33/246 (13%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           LP  S+DLI ADPPY L   G+ Y  D           DK S  + + A+TR WL     
Sbjct: 47  LPDASIDLIVADPPYGL---GKDYGNDS----------DKRSG-DDFLAWTREWLELAIP 92

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
            LKP+G++++  ++     I + L+     ++N+I+W +  P      RRF + H+ + +
Sbjct: 93  KLKPSGSMYIFCTWQYAPEIFSFLKT-QLTMVNEIIWDRRVPSMGGTTRRFTSVHDNIGF 151

Query: 155 ASPSPKAKGYTFNYDAL---------KAANEDVQMRSDWLIPICSGSE-----RLRNKDG 200
            + S   K Y F+ D +         KA +  +   S WL    +  +     RL  +  
Sbjct: 152 FAVS---KAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWSVSRLHRQHA 208

Query: 201 EKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     +  R F+G E+ + Y  
Sbjct: 209 ERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVGYEINESYCA 268

Query: 260 IATKRI 265
           IA +R+
Sbjct: 269 IAHERV 274


>gi|257468517|ref|ZP_05632611.1| putative methyltransferase [Fusobacterium ulcerans ATCC 49185]
 gi|317062777|ref|ZP_07927262.1| DNA-methyltransferase [Fusobacterium ulcerans ATCC 49185]
 gi|313688453|gb|EFS25288.1| DNA-methyltransferase [Fusobacterium ulcerans ATCC 49185]
          Length = 255

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/269 (31%), Positives = 130/269 (48%), Gaps = 46/269 (17%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           + I  L+K+   SVDL+F DPPYNL   G+ Y+          D W    + E Y  +  
Sbjct: 7   DVIDGLKKVENASVDLLFIDPPYNL---GKKYK-------GTIDHW---KTDEEYLEWCY 53

Query: 87  AWLLACRRVLKPNGTLWVI-----GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           +WL    + LKPNG L+ +     G+Y +I+    M       IL+ I+W   +     +
Sbjct: 54  SWLEVSLQKLKPNGCLYFMSSTQYGAYFDIYLREKM------HILSRIIWEYDSSGVQAK 107

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI------PICSGSE-- 193
            + F + +E +I+A  +   K YTFN+  +  A +    R   LI      P+    E  
Sbjct: 108 -KHFGSLYEPIIFAVMN--KKNYTFNFKDIMVATKTGAQRK--LIDYRKNPPVPYNEEKV 162

Query: 194 --------RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
                   R+R +  E + HP+QKPEALL RI+  ST   D ILD F GS + G V K+L
Sbjct: 163 PGNVWYFPRVRYRMKEYVEHPSQKPEALLERIIKVSTNETDTILDLFAGSFSLGMVCKRL 222

Query: 245 RRSFIGIEMKQDYIDIATKRIASVQPLGN 273
            R +IGIE  ++Y  +  +R+   + + N
Sbjct: 223 NRKYIGIEKSKEYYTVGIERLKDKKEVLN 251


>gi|307726598|ref|YP_003909811.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia sp.
           CCGE1003]
 gi|307587123|gb|ADN60520.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. CCGE1003]
          Length = 303

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 137/282 (48%), Gaps = 33/282 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +++  + ++ +  +P  S+DLI  DPPY L   G+ Y  D  +            S + +
Sbjct: 39  QLLNRDFLTDVANIPDGSIDLILCDPPYGL---GKDYGNDSDM-----------RSGDDF 84

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+TR WL      LKP+G+L++  ++     I + L+     ++N+I+W +  P     
Sbjct: 85  LAWTRGWLELAVPKLKPSGSLYIFCTWQYAPEIFSFLKT-KLVMINEIIWDRRVPSMGGT 143

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALK----AANEDVQMR-----SDWLIPICSGS 192
            RRF + H+ + + + S   K Y F+ D ++    AA +  + R     S WL    +  
Sbjct: 144 TRRFTSVHDNIGFFAVS---KDYYFDLDPVRIPYDAATKKARSRKLFEGSKWLELGYNPK 200

Query: 193 E-----RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           +     RL  +  E++ HPTQKP  ++ R++++S   G  +LDPF GSGT+     + +R
Sbjct: 201 DVWSVSRLHRQHAERVDHPTQKPLEIVERMVLASCPKGGRVLDPFMGSGTTAVACARQQR 260

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
            F+G E+ + Y  IA +R+++          V    + +P V
Sbjct: 261 EFVGYEINESYCAIARERVSAAAAAPAGRAPVKARAQRQPEV 302


>gi|313143165|ref|ZP_07805358.1| type IIS restriction enzyme M1 protein [Helicobacter cinaedi CCUG
           18818]
 gi|313128196|gb|EFR45813.1| type IIS restriction enzyme M1 protein [Helicobacter cinaedi CCUG
           18818]
          Length = 261

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 126/265 (47%), Gaps = 47/265 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   +  S LE L   S+DL   DPPYNL++                 SWD F S + 
Sbjct: 10  NKIYIQDCFSFLESLADSSIDLAIIDPPYNLKIA----------------SWDSFKSEKE 53

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGS-YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           + AF+  W+      +K NG+ ++  + YH    +  + +   F   N I W K + + +
Sbjct: 54  FLAFSYKWIDLLLPKMKKNGSFYIFNTPYHCALFLHYLQEKAVF--QNFITWYKKDGL-S 110

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA------------------------N 175
           +  +RF N  E++++ +    +K Y FN ++++                          N
Sbjct: 111 YTKKRFVNNQESILFYTMD--SKSYCFNPESIRVPYESTSRIEHAKKNGILKNGKRWYPN 168

Query: 176 EDVQMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
           E+ ++  D W I      +++  K  +  HPT KP+ ++ R++ +S+K GD++LD F GS
Sbjct: 169 ENGKLCPDVWEIASQRHKQKVNGKTQKLHHPTIKPKEMIERMIKASSKKGDLVLDLFSGS 228

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYID 259
           G +  VA+ L R+FIG E   +Y+D
Sbjct: 229 GMTSLVARDLERNFIGCEASIEYVD 253


>gi|148543440|ref|YP_001270810.1| DNA methylase N-4/N-6 domain-containing protein [Lactobacillus
           reuteri DSM 20016]
 gi|184152848|ref|YP_001841189.1| hypothetical protein LAR_0193 [Lactobacillus reuteri JCM 1112]
 gi|227363589|ref|ZP_03847706.1| adenine-specific methyltransferase [Lactobacillus reuteri MM2-3]
 gi|325681783|ref|ZP_08161302.1| DNA (cytosine-5-)-methyltransferase domain protein [Lactobacillus
           reuteri MM4-1A]
 gi|148530474|gb|ABQ82473.1| DNA methylase N-4/N-6 domain protein [Lactobacillus reuteri DSM
           20016]
 gi|183224192|dbj|BAG24709.1| hypothetical protein [Lactobacillus reuteri JCM 1112]
 gi|227071385|gb|EEI09691.1| adenine-specific methyltransferase [Lactobacillus reuteri MM2-3]
 gi|324978874|gb|EGC15822.1| DNA (cytosine-5-)-methyltransferase domain protein [Lactobacillus
           reuteri MM4-1A]
          Length = 319

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 127/285 (44%), Gaps = 59/285 (20%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNL--QLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +KII G+S  V+ +L    VDL   DPPYNL  Q +G  +               K  S 
Sbjct: 36  NKIINGDSFKVMTQLAPHQVDLALIDPPYNLNKQYDGLNF---------------KKMST 80

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
             Y  +T+ W+   + +LK N +++V   +     +  +L+  NF I N I W++     
Sbjct: 81  SQYQTYTQKWIDLLKPLLKENASIYVFSDWATSMALAPILEK-NFTIQNRITWQREKG-- 137

Query: 139 NFRG--RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ------MRSDWL----- 185
             RG  + ++N  E + + + +P    YTFN D +K   + V       +  DW      
Sbjct: 138 --RGSQKNWKNGMEDIWFLTANPS--DYTFNVDQVKQRRQVVAPYRQDGVAKDWQATKNG 193

Query: 186 ---------------IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
                          IP  S  E          HPTQKPE LL++I+++S+ P D I DP
Sbjct: 194 NFRDTMPSNFWDDISIPYWSMPENTG-------HPTQKPEKLLAKIILASSNPNDFIFDP 246

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           F GSG+S   A KL R ++GIE    Y      R+  V+   +I+
Sbjct: 247 FAGSGSSLVTAAKLNRRYLGIEQSLLYCAWGQYRLNQVKDDPSIQ 291


>gi|224436664|ref|ZP_03657673.1| type IIS restriction enzyme M1 protein (mod) [Helicobacter cinaedi
           CCUG 18818]
          Length = 254

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 126/265 (47%), Gaps = 47/265 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   +  S LE L   S+DL   DPPYNL++                 SWD F S + 
Sbjct: 3   NKIYIQDCFSFLESLADSSIDLAIIDPPYNLKIA----------------SWDSFKSEKE 46

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGS-YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           + AF+  W+      +K NG+ ++  + YH    +  + +   F   N I W K + + +
Sbjct: 47  FLAFSYKWIDLLLPKMKKNGSFYIFNTPYHCALFLHYLQEKAVF--QNFITWYKKDGL-S 103

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA------------------------N 175
           +  +RF N  E++++ +    +K Y FN ++++                          N
Sbjct: 104 YTKKRFVNNQESILFYTMD--SKSYCFNPESIRVPYESTSRIEHAKKNGILKNGKRWYPN 161

Query: 176 EDVQMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
           E+ ++  D W I      +++  K  +  HPT KP+ ++ R++ +S+K GD++LD F GS
Sbjct: 162 ENGKLCPDVWEIASQRHKQKVNGKTQKLHHPTIKPKEMIERMIKASSKKGDLVLDLFSGS 221

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYID 259
           G +  VA+ L R+FIG E   +Y+D
Sbjct: 222 GMTSLVARDLERNFIGCEASIEYVD 246


>gi|184200490|ref|YP_001854697.1| putative methyltransferase [Kocuria rhizophila DC2201]
 gi|183580720|dbj|BAG29191.1| putative methyltransferase [Kocuria rhizophila DC2201]
          Length = 289

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 135/292 (46%), Gaps = 60/292 (20%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL------------- 64
           E    I+ G +++VLE LP +S  L++ DPP+N   + Q+ R   S+             
Sbjct: 12  EGTSAIVHGENLTVLESLPDESFSLVYLDPPFNTGRD-QVRRTTRSVPVAHGEGDRVGFA 70

Query: 65  ---VDAVTDSWDKFS-SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
               + +  S  ++  SF  Y  F    L   RRVL  +GTL+V   Y  +  +  +L  
Sbjct: 71  GRSYETIMGSLRRYEDSFADYLGFLEPRLAHARRVLARHGTLYVHLDYREVHYVKVLLDA 130

Query: 121 L--NFWILNDIVWRKSNPMPNFRGR---RFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
           +      LN+IVW       +F GR   R+   H+T++     P A  Y FN       +
Sbjct: 131 MFGRECFLNEIVWAY-----DFGGRTTRRWPAKHDTILVYVKDPAA--YHFN-------S 176

Query: 176 EDVQMRSDWLIPICSGSERL-------------------RNKDGEKLHPTQKPEALLSRI 216
           +DV  R  ++ P   G E+                    R K G   +PTQKP  +L RI
Sbjct: 177 QDVD-REPYMAPGLVGPEKAARGKLPTDVWWHTIVSPTGREKTG---YPTQKPAGVLRRI 232

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           + +S++PGD +LD F GSGT+GAV+ +L R F+ ++   + +++   R+  V
Sbjct: 233 VTASSRPGDWVLDFFAGSGTTGAVSAELGRRFVCVDSNPEAVEVMRLRLPDV 284


>gi|237753191|ref|ZP_04583671.1| adenine specific DNA methyltransferase [Helicobacter winghamensis
           ATCC BAA-430]
 gi|229375458|gb|EEO25549.1| adenine specific DNA methyltransferase [Helicobacter winghamensis
           ATCC BAA-430]
          Length = 232

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 117/248 (47%), Gaps = 23/248 (9%)

Query: 22  KIIKGNSISVLEKLPAKSVDL--IFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K+   +S + ++++    V +  I  DPPYN+  +                 WDK     
Sbjct: 2   KLYNADSYTFIQQMLENKVKVHHIITDPPYNISKSNNFPSMRQRRQGVDFGVWDK----- 56

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            +D  +  W+     +L  NG++ +  SY  I  I   L+N N  + + ++W+KSNPMP 
Sbjct: 57  GFDLVS--WIPQYAEILDKNGSMIIFCSYRFISFITQALENSNMIVKDVLIWQKSNPMPR 114

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
              RR+    E  +WA  S     + FN       ++   +RS +   + SG E+L    
Sbjct: 115 NTTRRYVQDLEFAVWAVKS--GAKWVFN-----KPSDVPYLRSIFTHALVSGKEKLG--- 164

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
               HPTQK   L+  ++   T   +++LDPF GSG++GA   +L R FIGIE  + +  
Sbjct: 165 ----HPTQKSLKLMKDLIQIHTNLNEVVLDPFMGSGSTGAACLELGREFIGIERDKKFFT 220

Query: 260 IATKRIAS 267
           +A KR+ S
Sbjct: 221 MAQKRLES 228


>gi|296159696|ref|ZP_06842519.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. Ch1-1]
 gi|295890140|gb|EFG69935.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. Ch1-1]
          Length = 301

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 131/260 (50%), Gaps = 33/260 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +++  + +S +  +P  S+DLI  DPPY L   G+ Y  D  +            + + +
Sbjct: 38  QLLNRDFLSDVANIPDGSIDLILCDPPYGL---GKDYGNDSDM-----------RTGDDF 83

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+TR WL      LKP+G+L++  ++     I + L+     ++N+I+W +  P     
Sbjct: 84  LAWTRGWLELAIPKLKPSGSLYIFCTWQYAPEIFSFLKT-KLTMINEIIWDRRVPSMGGT 142

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALK----AANEDVQMR-----SDWLIPICSGS 192
            RRF + H+ + + + S   K Y F+ D ++    AA +  + R     S WL    +  
Sbjct: 143 VRRFTSVHDNIGFFAVS---KDYFFDLDPVRIPYDAATKKARSRKLFEGSKWLEVGYNPK 199

Query: 193 E-----RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           +     RL  +  E++ HPTQKP  ++ R++++S   G  +LDPF GSGT+     + +R
Sbjct: 200 DVWSVSRLHRQHAERVAHPTQKPLEIVERMVLASCPKGGRVLDPFMGSGTTAVACARQQR 259

Query: 247 SFIGIEMKQDYIDIATKRIA 266
            F+G E+ + Y  IA +R++
Sbjct: 260 EFVGYEINESYCAIARERVS 279


>gi|113868574|ref|YP_727063.1| DNA-methyltransferase [Ralstonia eutropha H16]
 gi|113527350|emb|CAJ93695.1| DNA-Methyltransferase [Ralstonia eutropha H16]
          Length = 308

 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 126/261 (48%), Gaps = 35/261 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++ + +    + +LP  SVDLI ADPPY L   G+ Y  D  L+           S + Y
Sbjct: 29  RLFQEDMFEGIARLPDGSVDLIVADPPYGL---GKDYGNDSDLL-----------SGQEY 74

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             ++  W+ A    L P GTL++  ++     +  ML+     ++N+I+W +  P     
Sbjct: 75  LDWSERWMNAVVPKLAPKGTLYLFCTWQYSPELFVMLKR-RLTMINEIIWDRRVPSMGGT 133

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE-------- 193
            R+F + H+ + + +   +A+ Y F+ D ++    D + +     P   G +        
Sbjct: 134 TRKFSSVHDNIGFFA---RARDYYFDLDPVRIPY-DPETKKARSRPRFEGKKWLEVGYNP 189

Query: 194 -------RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
                  R+  +D E+  HPTQKP  ++ R+++SS  PG ++LDPF GSGT+     +  
Sbjct: 190 KDLWSVSRIHRQDPERANHPTQKPLEIVERMVLSSCPPGGLVLDPFAGSGTTAVACLRHG 249

Query: 246 RSFIGIEMKQDYIDIATKRIA 266
           R F G E+  +Y+ +A  R++
Sbjct: 250 RRFAGFEINPEYVQVACDRVS 270


>gi|323529195|ref|YP_004231347.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia sp.
           CCGE1001]
 gi|323386197|gb|ADX58287.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. CCGE1001]
          Length = 303

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 132/262 (50%), Gaps = 33/262 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +++  + ++ +  +P  S+DLI  DPPY L   G+ Y  D  +            + + +
Sbjct: 39  QLLNRDFLTDVANIPDGSIDLILCDPPYGL---GKDYGNDSDM-----------RTGDDF 84

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+TR WL      LKP+G+L++  ++     I + L+     ++N+I+W +  P     
Sbjct: 85  LAWTRGWLELAIPKLKPSGSLYIFCTWQYAPEIFSFLKT-RLLMINEIIWDRRVPSMGGT 143

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALK----AANEDVQMR-----SDWLIPICSGS 192
            RRF + H+ + + + S   K Y F+ D ++    AA +  + R     S WL    +  
Sbjct: 144 TRRFTSVHDNIGFFAVS---KDYYFDLDPVRIPYDAATKKARSRKLFEGSKWLELGYNPK 200

Query: 193 E-----RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           +     RL  +  E++ HPTQKP  ++ R++++S   G  +LDPF GSGT+     + +R
Sbjct: 201 DVWSVSRLHRQHAERVDHPTQKPLEIVERMVLASCPKGGRVLDPFMGSGTTAVACARQQR 260

Query: 247 SFIGIEMKQDYIDIATKRIASV 268
            F+G E+ + Y  IA +R+++ 
Sbjct: 261 EFVGYEINESYCAIARERVSAA 282


>gi|91777257|ref|YP_552465.1| putative modification methylase [Burkholderia xenovorans LB400]
 gi|91689917|gb|ABE33115.1| Putative modification methylase [Burkholderia xenovorans LB400]
          Length = 301

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 131/260 (50%), Gaps = 33/260 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +++  + +S +  +P  S+DLI  DPPY L   G+ Y  D  +      + D F S+   
Sbjct: 38  QLLNRDFLSDVANIPDGSIDLILCDPPYGL---GKDYGNDSDM-----RTGDDFLSW--- 86

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
              TR WL      LKP+G+L++  ++     I + L+     ++N+I+W +  P     
Sbjct: 87  ---TRGWLELAIPKLKPSGSLYIFCTWQYAPEIFSFLKT-KLTMINEIIWDRRVPSMGGT 142

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALK----AANEDVQMR-----SDWLIPICSGS 192
            RRF + H+ + + + S   K Y F+ D ++    AA +  + R     S WL    +  
Sbjct: 143 VRRFTSVHDNIGFFAVS---KDYFFDLDPVRIPYDAATKKARSRKLFEGSKWLEVGYNPK 199

Query: 193 E-----RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           +     RL  +  E++ HPTQKP  ++ R++++S   G  +LDPF GSGT+     + +R
Sbjct: 200 DVWSVSRLHRQHAERVAHPTQKPLEIVERMVLASCPKGGRVLDPFMGSGTTAVACARQQR 259

Query: 247 SFIGIEMKQDYIDIATKRIA 266
            F+G E+ + Y  IA +R++
Sbjct: 260 EFVGYEINESYCAIARERVS 279


>gi|51891472|ref|YP_074163.1| DNA modification methylase M.SthI [Symbiobacterium thermophilum IAM
           14863]
 gi|51855161|dbj|BAD39319.1| DNA modification methylase M.SthI [Symbiobacterium thermophilum IAM
           14863]
          Length = 289

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 126/287 (43%), Gaps = 69/287 (24%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           I++G++   L+++P  S+  +   PPY    +  + GQ+      L D+V    +   S 
Sbjct: 19  ILEGDARLALQRIPDNSIQCVVTSPPYWSLRDYGIEGQI-----GLEDSVYQYINTLVSV 73

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWV-IGSYHN--------------------------- 110
                         RRVLKP+GTLW+ IG  +                            
Sbjct: 74  ----------FREVRRVLKPDGTLWLNIGDSYTSGGRTWRAPDKKNQARAMSIRPDTPEG 123

Query: 111 ---------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
                     +R+   LQ   +++ +DI+W K N MP     R   +HE +   S   K+
Sbjct: 124 LKPKDLIGVPWRLAFALQQDGWYLRSDIIWHKPNAMPESVKDRPTRSHEYIFLFS---KS 180

Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
           + Y ++Y A++  N     RS W I           +  ++ H    P  L+   +++ +
Sbjct: 181 ERYYYDYQAIREEN-GRNRRSVWHI---------NTQPNKEAHFAVFPTTLVEPCILAGS 230

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           KPGD +LDPF GSGT+  V + L R ++GIE+  +YI IA KR+ S+
Sbjct: 231 KPGDYVLDPFLGSGTTAVVCQNLDRKYVGIELNPEYIQIAVKRLTSI 277


>gi|193216190|ref|YP_001997389.1| putative methyltransferase [Chloroherpeton thalassium ATCC 35110]
 gi|193089667|gb|ACF14942.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Chloroherpeton thalassium ATCC 35110]
          Length = 292

 Score =  103 bits (257), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 135/275 (49%), Gaps = 39/275 (14%)

Query: 7   LAINENQNSIFEWKDKIIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHSLV 65
           +A  EN+N +      I  G++I +L++ +  +S+DL+F DPPYN+   G+ +       
Sbjct: 1   MAKFENKNHV------IYHGDAIDILQREIADESIDLVFVDPPYNI---GKKF------- 44

Query: 66  DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
              +D  DK+ S   Y  +   W+  C R+LKP GTL+++     +      +++    +
Sbjct: 45  ---SDFHDKWPSDTDYAEWAYRWIDECIRILKPTGTLYLMSGTQAMPYFDLYVRD-KLTV 100

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL------KAANEDVQ 179
           L  +VW   +     + + F + +E ++       AK Y FN D +       A  + + 
Sbjct: 101 LGRLVWAYDSSGVQAK-KYFGSMYEPILHCVKD--AKAYCFNADDILVEAKTGAKRKLID 157

Query: 180 MRSDWLIPICSGS--------ERLRNK-DGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
            R +   P  +           R+R + D  + HP+QKP  LL RI+ +S+  GDI+LDP
Sbjct: 158 YRGEVPKPYNTQKVPGNVWEFPRVRYRMDEYEDHPSQKPMVLLERIVRASSNAGDIVLDP 217

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           F G+ T+ AVAK   R  + IE ++ Y+ I  +RI
Sbjct: 218 FAGTFTAAAVAKAFGRKSVSIESQEKYLKIGLRRI 252


>gi|158333607|ref|YP_001514779.1| DNA methylase [Acaryochloris marina MBIC11017]
 gi|158303848|gb|ABW25465.1| DNA methylase [Acaryochloris marina MBIC11017]
          Length = 289

 Score =  103 bits (257), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 133/278 (47%), Gaps = 65/278 (23%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ--LNGQLYRPDHSLVDAVTDSWDKFSSF 78
           D  I+G+ + +  KL   S++L+  DPPYNL    NG+ +                  S 
Sbjct: 15  DITIQGDCLDIAPKLLQGSINLLILDPPYNLNKVFNGRTFAK---------------QSV 59

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            AY  +        + +L+P+ ++++ G + +   I T+  + +F + N I W +     
Sbjct: 60  AAYTEWLDYICSKLKPLLRPDASIYICGDWFSSASIFTVATS-HFQVRNRITWERE---- 114

Query: 139 NFRGR----RFQNAHETLIWASPSPKAKGYTFNYDALK-------------------AAN 175
             +GR     ++NA E + + + S     YTFN  A+K                   +  
Sbjct: 115 --KGRGAHSNWKNASEDIWFCTNS---NSYTFNSQAVKQRRRVLAPYRRPDGSPKDWSQT 169

Query: 176 EDVQMR--------SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
           E+   R        +D  IP  S  E   N D    HPTQK E L+++++++S+ PGD +
Sbjct: 170 ENGNFRDTFASNLWTDISIPFWSMPE---NTD----HPTQKSEKLVAKLILASSNPGDTV 222

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           LDPF GSGT+  VAKKL+R FIGIE+ ++Y  ++ +RI
Sbjct: 223 LDPFLGSGTTSVVAKKLQRQFIGIEIDEEYCLLSERRI 260


>gi|194467616|ref|ZP_03073603.1| DNA methylase N-4/N-6 domain protein [Lactobacillus reuteri 100-23]
 gi|194454652|gb|EDX43549.1| DNA methylase N-4/N-6 domain protein [Lactobacillus reuteri 100-23]
          Length = 319

 Score =  103 bits (257), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 126/283 (44%), Gaps = 55/283 (19%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNL--QLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +KII G+S  V+ +L    VDL   DPPYNL  Q +G  +               K  S 
Sbjct: 36  NKIINGDSFKVMTQLAPYQVDLALIDPPYNLNKQYDGLNF---------------KKMST 80

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
             Y  +T+ W+   + +LK N +++V   +     +  +L+  NF I N I W++     
Sbjct: 81  SKYQTYTQKWIDLLKPLLKENASIYVFSDWATSMALAPILEK-NFTIQNRITWQREKGRG 139

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ------MRSDWL------- 185
           + +   ++N  E + + + +P    YTFN D +K   + V       +  DW        
Sbjct: 140 SLKN--WKNGMEDIWFLTANPS--DYTFNVDQVKQRRQVVAPYRQDGVAKDWQATKNGNF 195

Query: 186 -------------IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
                        IP  S  E          HPTQKPE LL++I+++S+ P D I DPF 
Sbjct: 196 RDTMPSNFWDDISIPYWSMPENTG-------HPTQKPEKLLAKIILASSNPNDFIFDPFA 248

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           GSG+S   A KL R ++GIE    Y      R+  ++   +I+
Sbjct: 249 GSGSSLVTAAKLNRRYLGIEQSLLYCAWGQYRLNQIKDDPSIQ 291


>gi|259502088|ref|ZP_05744990.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
 gi|259169901|gb|EEW54396.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
          Length = 326

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 123/274 (44%), Gaps = 49/274 (17%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSF 78
           +D+ I G+S  V+ + P +  DL   DPPYNL              D   D  + K  S 
Sbjct: 46  RDRSINGDSFQVVRQFPDRFADLALVDPPYNL--------------DKRYDGLNFKHQST 91

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
             Y  +T+ W+   +  L P  +L+V   +     +  +L   NF + N I W++     
Sbjct: 92  GEYQEYTQRWIDLIKPKLTPTASLYVFADWQTSVALAPVLA-ANFTVKNRITWQREKG-- 148

Query: 139 NFRGRR--FQNAHETLIWASPSPKAKGYTFNYDALK------AANEDVQMRSDWLIPICS 190
             RG +  ++N  E + + +   +   YTFN D +K      A   +     DW     S
Sbjct: 149 --RGAKGNWKNGMEDIWFLTMDERE--YTFNVDQVKQRRQVIAPYRENGQAKDWH---ES 201

Query: 191 GSERLRNKDGEKL----------------HPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
            + R R+                      HPTQKPE LL++++++S+ PGD++LDPF G+
Sbjct: 202 AAGRFRDTMPSNFWDDISIPYWSMAENTGHPTQKPEKLLAKLILASSNPGDLVLDPFAGA 261

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           G+S   AKKL R F+GIE  + Y      R+ + 
Sbjct: 262 GSSLVTAKKLDRHFVGIEQSRLYTAWGVYRLQAA 295


>gi|296160132|ref|ZP_06842951.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. Ch1-1]
 gi|295889606|gb|EFG69405.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. Ch1-1]
          Length = 249

 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 110/256 (42%), Gaps = 54/256 (21%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D+   G+   +++ +PA   D    DPPY           D SL+      WD+  + 
Sbjct: 3   WLDQCHFGDCRELMKAMPAAIADACITDPPYG----------DTSLI------WDRRCA- 45

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
                    W+    RVLKP  ++WV GS   +  +   +    F    +IVWRK N   
Sbjct: 46  --------GWIDQVSRVLKPASSIWVFGSMRFVATLFAEMDAAGFRYGQEIVWRKQNGT- 96

Query: 139 NFRGRRFQNAHETLI------WAS--PSPKAKG--------------YTFNYDALKAANE 176
            F   RF+  HE  I      W     +P+                 +T N +A    +E
Sbjct: 97  GFHNDRFRRVHEFAIQFYRGAWEDVFKAPQYSNDATARTVRRKTRPTHTGNIEAGHYVSE 156

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
           D   R      +      + N+ G  LHPTQKP A+++ ++  S  PG ++LDPF GSG+
Sbjct: 157 DGGPR------LVQSVIEVPNEHGRALHPTQKPLAIIAPLIAYSVPPGGVVLDPFLGSGS 210

Query: 237 SGAVAKKLRRSFIGIE 252
           +G  AK+L R FIG E
Sbjct: 211 TGIAAKQLGRHFIGCE 226


>gi|170691068|ref|ZP_02882234.1| DNA methylase N-4/N-6 domain protein [Burkholderia graminis C4D1M]
 gi|170144317|gb|EDT12479.1| DNA methylase N-4/N-6 domain protein [Burkholderia graminis C4D1M]
          Length = 303

 Score =  102 bits (255), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 129/260 (49%), Gaps = 33/260 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +++  + ++ +  +P  S+DLI  DPPY L   G+ Y  D  +            + + +
Sbjct: 39  QLLNRDFLTDVANIPDASIDLILCDPPYGL---GKDYGNDSDM-----------RTGDDF 84

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+TR WL      LKP+G+L++  ++     I + L+     ++N+I+W +  P     
Sbjct: 85  LAWTRGWLELAIPKLKPSGSLYIFCTWQYAPEIFSFLKT-KLTMINEIIWDRRVPSMGGT 143

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR---------SDWLIPICSGS 192
            RRF + H+ + + + S   K Y F+ D ++   + V  +         S WL    +  
Sbjct: 144 TRRFTSVHDNIGFFAVS---KDYYFDLDPVRIPYDAVTKKARSRKLFEGSKWLELGYNPK 200

Query: 193 E-----RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           +     RL  +  E++ HPTQKP  ++ R++++S   G  +LDPF GSGT+     + +R
Sbjct: 201 DVWSVSRLHRQHAERVDHPTQKPLEIVERMVLASCPKGGRVLDPFMGSGTTAVACARQQR 260

Query: 247 SFIGIEMKQDYIDIATKRIA 266
            F+G E+ + Y  IA +R++
Sbjct: 261 EFVGYEINESYCAIARERVS 280


>gi|295700770|ref|YP_003608663.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. CCGE1002]
 gi|295439983|gb|ADG19152.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. CCGE1002]
          Length = 304

 Score =  102 bits (255), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 128/260 (49%), Gaps = 33/260 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +++  + ++ +  +P  S+DLI  DPPY L   G+ Y  D  +            + E +
Sbjct: 39  QLLNRDFLTDVANIPDGSIDLIVCDPPYGL---GKDYGNDSDM-----------RTGEEF 84

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +TR WL      LKP+G+L++  ++     I + L+     ++N+I+W +  P     
Sbjct: 85  LVWTRGWLELAVPKLKPSGSLYIFCTWQYAPEIFSFLKT-KLVMVNEIIWDRRVPSMGGT 143

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR---------SDWLIPICSGS 192
            RRF + H+ + + + S   K Y F+ D ++   + V  +         S WL    +  
Sbjct: 144 TRRFTSVHDNIGFFAVS---KDYFFDLDPVRIPYDAVTKKARSRKLFEGSKWLELGYNPK 200

Query: 193 E-----RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           +     RL  +  E++ HPTQKP  ++ R+++SS   G  +LDPF GSGT+     + +R
Sbjct: 201 DVWSVSRLHRQHAERVAHPTQKPLEIVERMVLSSCPKGGRVLDPFMGSGTTAVACVRHQR 260

Query: 247 SFIGIEMKQDYIDIATKRIA 266
            F+G E+ + Y  IA +R++
Sbjct: 261 EFVGYEINESYCAIARERVS 280


>gi|148654309|ref|YP_001274514.1| adenine-specific DNA-methyltransferase [Roseiflexus sp. RS-1]
 gi|148566419|gb|ABQ88564.1| Site-specific DNA-methyltransferase (adenine-specific) [Roseiflexus
           sp. RS-1]
          Length = 303

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 135/283 (47%), Gaps = 50/283 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYN---LQLNGQLYRPDHSLVDAVTDSWDKFSS- 77
           KI   ++I VL  LP++SVDLI+ DPP+N   +Q   QL        D V     ++ S 
Sbjct: 14  KIYLADNIDVLRTLPSESVDLIYIDPPFNTGKVQERTQLKTVRSESGDRVGFQGHRYESI 73

Query: 78  ----------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWI 125
                     F+ Y AF    L+   R+L P+G L+V   Y  +     +L  +      
Sbjct: 74  VVGKKRFADLFDDYLAFLEPRLVEAHRILAPHGCLYVHLDYREVHYCKVLLDAIFDRACF 133

Query: 126 LNDIVWRKSNPMPNFRGR---RFQNAHETLIWASPSPKAKGYTFNYDAL----------- 171
           LN+I+W       ++ GR   R+   H+T++  +  P    + FN DA+           
Sbjct: 134 LNEIIWAY-----DYGGRPRDRWPPKHDTILLYAKVPGQ--HVFNLDAIERIPYMAPGLV 186

Query: 172 ---KAANEDVQMRSDW--LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
              KAA   +   + W  ++P  +GSE    K G   +PTQKP  +L RI+ +S+ PG +
Sbjct: 187 GPEKAARGKLPTDTWWHTIVP-TNGSE----KTG---YPTQKPLGILRRIIQASSHPGAV 238

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           +LD F GSGT+G  A +L R FI ++  Q+ + +  +R   ++
Sbjct: 239 VLDFFAGSGTTGIAALELGRRFILVDNSQEALQVMARRFDGIR 281


>gi|209518946|ref|ZP_03267756.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. H160]
 gi|209500598|gb|EEA00644.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. H160]
          Length = 304

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 127/260 (48%), Gaps = 33/260 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +++  + ++ +  +P  S+DLI  DPPY L   G+ Y  D  +            + E +
Sbjct: 39  QLLNRDFLTDVANIPDGSIDLIVCDPPYGL---GKDYGNDSDM-----------RTGEEF 84

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +TR WL      LKP G+L++  ++     I + L+     ++N+I+W +  P     
Sbjct: 85  LVWTRGWLELAVPKLKPTGSLYIFCTWQYAPEIFSFLKT-KLTMVNEIIWDRRVPSMGGT 143

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR---------SDWLIPICSGS 192
            RRF + H+ + + + S   K Y F+ D ++   + V  +         S WL    +  
Sbjct: 144 TRRFTSVHDNIGFFAVS---KDYFFDLDPVRIPYDAVTKKARSRKLFEGSKWLELGYNPK 200

Query: 193 E-----RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           +     RL  +  E++ HPTQKP  ++ R+++SS   G  +LDPF GSGT+     + +R
Sbjct: 201 DVWSVSRLHRQHAERVAHPTQKPLEIVERMVLSSCPKGGRVLDPFMGSGTTAVACVRHQR 260

Query: 247 SFIGIEMKQDYIDIATKRIA 266
            F+G E+ + Y  IA +R++
Sbjct: 261 EFVGYEINESYCAIARERVS 280


>gi|325996643|gb|ADZ52048.1| type IIS restriction enzyme M1 protein [Helicobacter pylori 2018]
 gi|325998232|gb|ADZ50440.1| type IIS restriction enzyme M1 protein [Helicobacter pylori 2017]
          Length = 258

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 120/264 (45%), Gaps = 46/264 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   +  + L+KL  KSVDL   DPPYNL++                 SWD F + E 
Sbjct: 2   NKIYIEDVFTFLDKLEDKSVDLAIIDPPYNLKIA----------------SWDSFKNDEE 45

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           +  F+ AW+      +K  G+ ++  +  N       L +     LN I W K +   N 
Sbjct: 46  FLTFSYAWIDKVLPKIKDTGSFYIFNTPFNCALFLAYLCHKKAHFLNFITWVKKDGFANA 105

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM------------RSDWLIPI 188
           + +R+ +A E++++ S     K YTFN D ++ A E  +                W  P 
Sbjct: 106 K-KRYNHAQESILFYSMH--KKNYTFNADEVRTAYESTERIKHAQSKGILKNNKRWF-PN 161

Query: 189 CSG----------SERLRNKDGEKL----HPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
             G          S+R   K+  K+    HP+ KP+AL+ R++ +S+   D+ILD F GS
Sbjct: 162 PKGKLCLDVWEITSQRHVEKENGKILKPKHPSIKPKALIERMIKASSNENDLILDLFSGS 221

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYI 258
           G    VAK L R+FIG E    Y+
Sbjct: 222 GMISLVAKSLGRNFIGCETHAGYV 245


>gi|261837492|gb|ACX97258.1| type IIS m6A methylase [Helicobacter pylori 51]
          Length = 247

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 120/257 (46%), Gaps = 44/257 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   +  + L+KL  KSVDL   DPPYNL++                 SWD F + E 
Sbjct: 4   NKIYIEDVFTFLDKLEDKSVDLAIIDPPYNLKIA----------------SWDSFKNDEE 47

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           +  F+ AW+      LK  G+ ++  +  N       L +     LN I W K +   N 
Sbjct: 48  FLTFSYAWIDKMLPKLKDTGSFYIFNTPFNCALFLAYLCHKKVHFLNFITWVKKDGFANA 107

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALK-----------AANEDVQMRSDWLIPIC 189
           + +R+ +A E++++ S     K YTFN D ++           A N+ +   +    P  
Sbjct: 108 K-KRYNHAQESILFYSMH--KKNYTFNADEIRTTYESTERIKHAQNKGILKNNKRWFPNP 164

Query: 190 SG----------SERLRNKDGEKL----HPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
            G          S+R   K+  K+    HP+ KP+AL+ R++ +S+   D+ILD F GSG
Sbjct: 165 KGKLCLDVWEITSQRHVEKENGKILKPKHPSIKPKALIERMIKASSHKNDLILDLFSGSG 224

Query: 236 TSGAVAKKLRRSFIGIE 252
            +  VAK L R+FIG E
Sbjct: 225 MTSLVAKSLGRNFIGCE 241


>gi|323345089|ref|ZP_08085313.1| modification methylase BglII (N(4)) [Prevotella oralis ATCC 33269]
 gi|323094359|gb|EFZ36936.1| modification methylase BglII (N(4)) [Prevotella oralis ATCC 33269]
          Length = 260

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 129/271 (47%), Gaps = 43/271 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           DKI   +S   + ++P KSV L+   PPYN+ ++      +  +V +    +    S   
Sbjct: 2   DKIF-NHSSEFMSEIPDKSVSLMVTSPPYNIDISYGNKWKNRRIVSSKGKKYADKQSEAD 60

Query: 81  YDAFTRAWLLACRRVLKPNGTLW--VIGSYHNI-----FRIGTMLQNLNFWILNDIVWRK 133
           Y       +   +RVLK +G +W  +   Y N      F I    +++  ++ N ++W  
Sbjct: 61  YRKMLDKVIKETKRVLKDDGQIWFNIKNRYENCVIQPPFWIMEYFKDM--YLKNIVIW-- 116

Query: 134 SNPMPNF-----RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD----- 183
                NF       +RF + +E + + + +     YTFN D +K     +  R D     
Sbjct: 117 -----NFDWGGATQKRFCSRYEYVFFFTKN--KDKYTFNLDDVKIPA--LNYRPDRYKSQ 167

Query: 184 -------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
                  W I + SG+   R +     HP+Q PE L+ RI+   T  GD++LDPF GSGT
Sbjct: 168 LKNPTDVWKISLVSGNSPERTE-----HPSQYPEELVERIIKVGTHEGDLVLDPFMGSGT 222

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           +  VAK+L R ++G E++ +YI+IA KR+ +
Sbjct: 223 TAVVAKRLNRRYVGYEIEPEYIEIANKRLEN 253


>gi|325564297|gb|ADZ31432.1| M.DraI [Deinococcus radiophilus]
          Length = 328

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 133/287 (46%), Gaps = 61/287 (21%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF- 78
           ++KII  +    L+ LP   VDL+  DPPYNL    ++Y            +  KFS   
Sbjct: 40  RNKIINQDLFDCLDNLPDAFVDLMIIDPPYNLD---KVY------------AGKKFSQTD 84

Query: 79  -EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E Y  +  +WL    R+LKP+ T+++   + +   I ++       I + I W +    
Sbjct: 85  DETYKEWVDSWLSRLIRLLKPDATVYICCDWQSSNVIHSVASKY-LKIRSRITWEREKG- 142

Query: 138 PNFRGRR--FQNAHETLIWASPSPKAKGYTFNYDALKAANEDV----------------- 178
              RG +  ++N  E + + +     K Y F+ +A+K     +                 
Sbjct: 143 ---RGSKDNWKNCSEDIWYCTV---GKKYFFDVEAVKLMKRVIAPYRDGDGKPKDWSEKA 196

Query: 179 ----------QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
                      + +D  IP  S  E   N D    HPTQKPE L+++++VSS+K GD+I 
Sbjct: 197 EGKYRLTHPSNLWTDISIPFWSMPE---NTD----HPTQKPEKLIAKLIVSSSKKGDMIF 249

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           DPF GSGTS   AKKL R+++GIE+ ++Y  +A  R+   +    I+
Sbjct: 250 DPFMGSGTSCVTAKKLGRNYLGIEISEEYCKMAAARLIRAEDDKRIQ 296


>gi|317014760|gb|ADU82196.1| type IIS restriction enzyme M1 protein (mod) [Helicobacter pylori
           Gambia94/24]
          Length = 260

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 119/264 (45%), Gaps = 46/264 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   +  + L+KL  KSVDL   DPPYNL++                 SWD F + E 
Sbjct: 4   NKIYIEDVFTFLDKLEDKSVDLAIIDPPYNLKIA----------------SWDSFKNDEE 47

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           +  F+ AW+      +K  G+ ++  +  N       L       LN I W K +   N 
Sbjct: 48  FLTFSYAWIDKVLPKIKDTGSFYIFNTPFNCALFLAYLCQKKAHFLNFITWVKKDGFANA 107

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM------------RSDWLIPI 188
           + +R+ +A E++++ S     K YTFN D ++ A E  +                W  P 
Sbjct: 108 K-KRYNHAQESILFYSMH--KKNYTFNADEVRTAYESTERIKHAQSKGILKNNKRWF-PN 163

Query: 189 CSG----------SERLRNKDGEKL----HPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
             G          S+R   K+  K+    HP+ KP+AL+ R++ +S+   D+ILD F GS
Sbjct: 164 PKGKLCLDVWEITSQRHVEKENGKILKPKHPSIKPKALIERMIKASSNENDLILDLFSGS 223

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYI 258
           G    VAK L R+FIG E    Y+
Sbjct: 224 GMISLVAKSLGRNFIGCETHAGYV 247


>gi|87306976|ref|ZP_01089122.1| adenine-specific methyltransferase [Blastopirellula marina DSM
           3645]
 gi|87290349|gb|EAQ82237.1| adenine-specific methyltransferase [Blastopirellula marina DSM
           3645]
          Length = 309

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 120/281 (42%), Gaps = 54/281 (19%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           DK+   + I  + KLP  SVDL+FADPP+N+     +Y              D   S + 
Sbjct: 7   DKLKNVDCIQGMSKLPDGSVDLVFADPPFNIGFKYDVY--------------DDRRSADE 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           Y  ++RAW+    RVLK +G+ W+ IG            ++L     N +VW  +  M  
Sbjct: 53  YLEWSRAWMEQVARVLKSDGSFWLAIGDDFAAELKVLATRDLGMHCRNWVVWYYTFGM-- 110

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN------------------------ 175
               +F  +H  L +    P+   +TFN  +++  +                        
Sbjct: 111 HCKAKFTRSHTHLFYFVKDPE--NFTFNDMSVRVPSARMLVYGDRRANPKGRLPDDTWVL 168

Query: 176 ------EDVQMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
                 E  Q   D W  P  +G+ + R       H  Q PE LL RI+  S+  G+ +L
Sbjct: 169 RPQDIPESFQAEEDTWHFPRVAGTFKER----AGFHGCQMPEQLLGRIIKVSSSEGETVL 224

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           DPF GSG++  VAKKL R  +G EM  +Y   A  RI  VQ
Sbjct: 225 DPFAGSGSTLVVAKKLGRRHLGFEMSPEYAAAAQARIDEVQ 265


>gi|315231720|ref|YP_004072156.1| modification methylase [Thermococcus barophilus MP]
 gi|315184748|gb|ADT84933.1| modification methylase [Thermococcus barophilus MP]
          Length = 312

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 139/268 (51%), Gaps = 32/268 (11%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+II G+ +  + KL  K V L F DPP+N    G+ YR            ++   S E 
Sbjct: 4   DEIILGDCLEWIPKL--KGVHLSFLDPPFN---QGKEYR-----------FFNDNLSEEE 47

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK-SNPMPN 139
           Y  + +  +    +V +  G ++ +    N   +  +L+   + + N I+W+K ++ +P 
Sbjct: 48  YWGWMKEVVREIYKVTEKGGAIYFMQREKNTEWVLRILRETGWTLQNLIIWKKMASAVP- 106

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYT---FNYDAL---KAANEDVQMRSDWLIPI----- 188
            +  RF  A++ + +A+   K + +     +Y      K   E+    +D    I     
Sbjct: 107 -QRYRFNKAYQIIAFATKGKKPRVFNKLRVDYPLAPWHKYPRENGIYLTDVWDDIRELTS 165

Query: 189 --CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
              +G E LR++ G+++H  Q P ALL RI++SST PGD++LDPF G+GT+  VAK+L+R
Sbjct: 166 GYFAGDEPLRDESGKRIHLQQSPVALLLRIILSSTMPGDLVLDPFAGTGTTLVVAKQLKR 225

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNI 274
            ++GIE+   Y+++  KR++ ++   +I
Sbjct: 226 HYVGIEIDPHYVEVIKKRLSKLRKADDI 253


>gi|325107355|ref|YP_004268423.1| DNA methylase N-4/N-6 domain protein [Planctomyces brasiliensis DSM
           5305]
 gi|324967623|gb|ADY58401.1| DNA methylase N-4/N-6 domain protein [Planctomyces brasiliensis DSM
           5305]
          Length = 625

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 137/311 (44%), Gaps = 80/311 (25%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           ++ I+ G+ ++ ++ LP+ SVDLIFADPP+N+     +Y+                 + +
Sbjct: 9   RNTILPGDCVAGMQSLPSGSVDLIFADPPFNIGYEYDVYK--------------DVLAGD 54

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y A+++ W+ A    LKP+GT W+         +    + + F + + ++W  +  + N
Sbjct: 55  QYVAWSKDWMQAAYDCLKPDGTFWLAIGDEYAAELKVTAREIGFHMRSWVIWYYTFGV-N 113

Query: 140 FRGRRFQNAHETLIW---------------ASPSPKAKGYTFNYDALKAANEDVQMRSD- 183
            R R+F  +H  L +               A+  P A+   +N    K AN   ++  D 
Sbjct: 114 CR-RKFSRSHAHLFYFVKNADEFTFLDDEPANRIPSARQLVYND---KRANPAGRLPDDT 169

Query: 184 WLI-PICSGSE---------------------RLRNKDGEK------------------- 202
           W+I P  +  E                      LR +D E                    
Sbjct: 170 WIISPDTAEGELQLPDSIVQELREGMPGEQTWTLRPQDLESCFQAEEDTWYFPRVAGTFK 229

Query: 203 ----LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                H  Q PE LL RI+ S ++PG+++LDPF GS T+ AVAKKL R+++G E+ +DY+
Sbjct: 230 ERAGFHGCQMPEQLLGRIVRSCSRPGELVLDPFSGSATTLAVAKKLNRNYLGFELSEDYV 289

Query: 259 DIATKRIASVQ 269
                R+  V+
Sbjct: 290 AHGLARLDGVR 300


>gi|167044904|gb|ABZ09571.1| putative DNA methylase [uncultured marine crenarchaeote
           HF4000_APKG8D22]
          Length = 255

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 123/256 (48%), Gaps = 26/256 (10%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   + I  ++ +P + +DL+  DPP+ +    +    + +    V   + +    + 
Sbjct: 2   NKIYNKDCIVGMKAIPNEKIDLVITDPPFAINFKAKKANYNRT-ASRVLSGYHEIKVEDY 60

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FT AW+    R+LK +G+++V   ++N+  I T L +  F  +N I+W+    +   
Sbjct: 61  YD-FTNAWMYEIYRILKKSGSMYVFSGWNNLKDILTALDDNGFTTINHIIWKYQFGVVT- 118

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS--------DWLIPICSGS 192
             ++F  +H   ++     K + + F Y   K   +    RS         W+I      
Sbjct: 119 -SKKFVTSHYHCLFVCKDNKKRKF-FPYSRFKKNAKTSDGRSLHYKDKEDVWII------ 170

Query: 193 ERLRNKD---GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
               N++   G+   PT+ P  ++ +IL  S++  D++LDPF GSG    ++K L R ++
Sbjct: 171 ----NREYWTGDDKTPTKLPAEIIKKILQYSSQKTDLVLDPFLGSGQVAVISKMLGRRYL 226

Query: 250 GIEMKQDYIDIATKRI 265
           G E+ + Y D ATKRI
Sbjct: 227 GFEIVKPYYDFATKRI 242


>gi|163845918|ref|YP_001633962.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222523640|ref|YP_002568110.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus sp.
           Y-400-fl]
 gi|163667207|gb|ABY33573.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222447519|gb|ACM51785.1| DNA methylase N-4/N-6 domain protein [Chloroflexus sp. Y-400-fl]
          Length = 400

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 143/291 (49%), Gaps = 40/291 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++ G+   VL+ +   S+DL++ DPP+  Q    L   D +   +  D+W+   S E Y 
Sbjct: 3   VLCGDCRIVLQSINDSSIDLVYMDPPFFTQKTHALVNRDGNASYSFEDTWE---SIETYL 59

Query: 83  AFTRAWLLACRRVLKPNGTLWV----IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           AF R  L+ C+RVLK  G+++V      S+H    +  +    +F   ++I+W       
Sbjct: 60  AFMREVLIQCKRVLKDTGSIFVHCDRSASHHLRVLLDQIFGPEHFQ--SEIIWTYRRWSN 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAK--------GYTFNYDAL---KAANEDVQ--MRSDWL 185
           + +G     AH+T+ + S +   K          T N D +   +A NE  +   R D  
Sbjct: 118 SKKG--LLPAHQTIYFYSKTENFKFNVLFTDYSPTTNIDQILQARARNEKGKSVYRRDQH 175

Query: 186 IPICSGSER-------------LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPF 231
             I +G E+             L  K  E++ +PTQKP  LL RI+  +T  GD +LDPF
Sbjct: 176 GNIVAGKEKKGVPLSDVWYIPFLNPKAKERVGYPTQKPVLLLERIIKIATDSGDSVLDPF 235

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
            GSGT+   AK L R++IGI++ ++ + ++ +R+   QP+ +    ++ G+
Sbjct: 236 CGSGTTLVAAKLLGRTYIGIDISREAVSLSEERLR--QPIKSESQLLVVGE 284


>gi|218439992|ref|YP_002378321.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
 gi|218172720|gb|ACK71453.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
          Length = 305

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 123/265 (46%), Gaps = 45/265 (16%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           DKI+ G+ + +  K+P +S+D+ FADPP+N +               + D+ +    F+ 
Sbjct: 7   DKILLGDCLDLFSKIPDESIDVTFADPPFNFK----------KKYGNIKDNLE----FKE 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML-------QNLNFWILNDIVWRK 133
           Y  +   W+    RV KP+G++++    HNI +  T          N   WI  D     
Sbjct: 53  YLKWCELWIDEMIRVTKPSGSIFI----HNIPKWLTYYCSFLNEKSNFRHWISWDA---P 105

Query: 134 SNPMPNFRGRRFQNAHE-TLIWASPSPKAKGYTFNYDALKAAN-----EDVQMRSDWLIP 187
           + PM    G+  Q +H   L +A    K K Y   Y   +        +D   + D + P
Sbjct: 106 TAPM----GKTLQPSHYGILFYAKTLAKNKFYEIRYSHKRCRKCNYLYKDYGGKKDSIHP 161

Query: 188 -------ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
                  + +   R+++      HP Q P  LL RI++ ST   DIILDPF G+GT+   
Sbjct: 162 FGPLVSDVWTDIHRIKHNKYRDNHPCQLPVHLLERIILMSTDESDIILDPFMGTGTTAIA 221

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRI 265
           AK+L R +IG E+ + Y+++A  ++
Sbjct: 222 AKRLGRHYIGFEINELYLEVAEGKL 246


>gi|153831218|ref|ZP_01983885.1| DNA methylase [Vibrio cholerae 623-39]
 gi|148873298|gb|EDL71433.1| DNA methylase [Vibrio cholerae 623-39]
          Length = 314

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 124/270 (45%), Gaps = 43/270 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           + +G+SI  L+ L ++SVDLIF+DPPYN+                    WDKF + E Y 
Sbjct: 41  LYEGDSIEWLKTLDSESVDLIFSDPPYNIN----------------KADWDKFETQEKYI 84

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            ++  W+    RVLK  GTL+V G +  I           F     ++W   N   N  G
Sbjct: 85  DWSMQWISEAYRVLKKEGTLYVCG-FSEILADIKHPSMKYFKSCRWLIWHYKNKA-NL-G 141

Query: 143 RRFQNAHETLIWASPSPKA-----------KGYTFNYDALKAAN----EDVQMRSDWLIP 187
             +  +HE+++    S K             G+T  Y +   A      +   R D   P
Sbjct: 142 NDWGRSHESILHLRKSNKKIFNVDDVRVPYGGHTLKYPSHPQAQTSQYSNGSKRKDVWTP 201

Query: 188 ICSGSE--------RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
              G++           N  GEK  HPTQKPE L+ + +++S+  GD+++DPF GSGT+ 
Sbjct: 202 HPRGAKPRDVIEVPTTCNGMGEKTKHPTQKPEELVRKFILASSNEGDLVIDPFSGSGTTA 261

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            VA++L R +   ++   Y + A  R+ ++
Sbjct: 262 VVAEQLGRRWAACDINPQYNNWAMDRLDNI 291


>gi|159900577|ref|YP_001546824.1| site-specific DNA-methyltransferase [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159893616|gb|ABX06696.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 281

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 129/283 (45%), Gaps = 46/283 (16%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYN---LQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           +K+  G++++VL  LPA S DLI+ DPP+N   +Q   QL        D V     ++SS
Sbjct: 2   NKLYFGDNLAVLATLPAASYDLIYIDPPFNTGKIQSRTQLRTVRSEQGDRVGFGGHRYSS 61

Query: 78  -----------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFW 124
                      F+ + AF    LL   R+LKP G+ +    Y  +     ++  +     
Sbjct: 62  IKIGERAYGDSFDDFLAFIEPRLLEAYRLLKPQGSFFFHIDYREVHYCKVLIDQIFGRDS 121

Query: 125 ILNDIVWRKSNPMPNFRGRR-FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
            +N+I+W         R R+ +   H+T++W +  P+   YTFNYD +         R  
Sbjct: 122 FINEIIWAYDY---GARSRKKWSTKHDTILWYAKDPE--NYTFNYDQID--------RIP 168

Query: 184 WLIPICSGSERLR----------------NKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
           ++ P   G E+                  N   +  +PTQKP A+L+RI+   + P D +
Sbjct: 169 YMAPGLVGPEKAARGKTPTDVWWNTIVSPNGKEKTGYPTQKPLAILNRIVRVHSNPNDQL 228

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
           LD F GSG+ G  A +  R+F  I+     I++  +R+A  +P
Sbjct: 229 LDFFAGSGSFGEAAARNGRNFTLIDQNPQAIEVMRQRLAFAEP 271


>gi|269926576|ref|YP_003323199.1| DNA methylase N-4/N-6 domain protein [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269790236|gb|ACZ42377.1| DNA methylase N-4/N-6 domain protein [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 276

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 128/271 (47%), Gaps = 50/271 (18%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G+++S L+KL + SV L++ADPP+         R +   VD      D +   + Y  + 
Sbjct: 7   GDNLSFLKKLASGSVTLVYADPPF---------RTNRIRVDENGKYNDVWQGIDHYLEWL 57

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL----NFWILNDIVWRKSNPMPNFR 141
              L    R+L  +GT ++     ++  +  ++ ++    NF   N+I+W  +      R
Sbjct: 58  APRLCEIHRILSEDGTFYLHLDRRSVHYVRLLMDDIFGANNFQ--NEIIWHYTG---GGR 112

Query: 142 G-RRFQNAHETLIWASPSPKAKGYTFNYDALKA--------ANEDVQMRSD--------- 183
           G R F + H+ ++      K + Y FN DA++         A   ++ RS          
Sbjct: 113 GSRHFPHKHDNILVYH---KTRKYKFNVDAVREPYAKTSGYARSGIRARSGKFYSPHPLG 169

Query: 184 ------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                 W IPI +     R       +P+QKPE LL RI+V+S+  GDI+LDPF GSGT+
Sbjct: 170 KVLDDVWFIPIVNPLSPERTG-----YPSQKPEELLRRIIVASSDKGDIVLDPFCGSGTT 224

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
              A KL R +IG++   + I I  +R+ ++
Sbjct: 225 LVAAHKLERQWIGMDSSPEAISICIERLKAI 255


>gi|207722999|ref|YP_002253422.1| dna-methyltransferase (dna-modification methylase) protein
           [Ralstonia solanacearum MolK2]
 gi|206588188|emb|CAQ18757.1| dna-methyltransferase (dna-modification methylase) protein
           [Ralstonia solanacearum MolK2]
          Length = 272

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 124/252 (49%), Gaps = 33/252 (13%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I   + I+ + +L   SV+L+ ADPPY L   G+ Y  D           DK S  EA
Sbjct: 7   DGIFNEDCIAGIGQLADGSVNLVIADPPYGL---GKDYGNDS----------DKLSG-EA 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y A++  W+ A    L  NG++++  ++     +  ML+     ++N+I+W +  P    
Sbjct: 53  YLAWSERWIEAVLPKLARNGSVYLFCTWQYAPELFVMLKR-RLAMINEIIWDRRVPSMGG 111

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA--NEDVQMRS-------DWLIPICSG 191
             R+F + H+ + + + S   + Y F+ DA++     E  + RS        WL    + 
Sbjct: 112 STRKFSSVHDNIGFFAAS---RDYYFDVDAVRIPYDAETKKARSRKRFEGKKWLEVGYNP 168

Query: 192 SE-----RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
            +     RL  +D E+  HPTQKP  L+ R++++S  PG ++LDPF GSGT+     +  
Sbjct: 169 KDVWSVSRLHRQDPERAEHPTQKPLELVERMVLASCPPGGLVLDPFLGSGTTAVACARRG 228

Query: 246 RSFIGIEMKQDY 257
           R F G E+  +Y
Sbjct: 229 RRFAGFEINAEY 240


>gi|300703719|ref|YP_003745321.1| site-specific DNA-methyltransferase (adenine-specific) [Ralstonia
           solanacearum CFBP2957]
 gi|299071382|emb|CBJ42701.1| Site-specific DNA-methyltransferase (adenine-specific) [Ralstonia
           solanacearum CFBP2957]
          Length = 272

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 124/252 (49%), Gaps = 33/252 (13%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I   + I+ + +L   SV+L+ ADPPY L   G+ Y  D           DK S  EA
Sbjct: 7   DGIFNEDCIAGIGQLADGSVNLVIADPPYGL---GKDYGNDS----------DKLSG-EA 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y A++  W+ A    L  NG++++  ++     +  ML+     ++N+I+W +  P    
Sbjct: 53  YLAWSERWIEAVLPKLARNGSVYLFCTWQYAPELFVMLKR-RLAMINEIIWDRRVPSMGG 111

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA--NEDVQMRS-------DWLIPICSG 191
             R+F + H+ + + + S   + Y F+ DA++     E  + RS        WL    + 
Sbjct: 112 STRKFSSVHDNIGFFAAS---RDYYFDVDAVRIPYDAETKKARSRKRFEGKKWLEVGYNP 168

Query: 192 SE-----RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
            +     RL  +D E+  HPTQKP  L+ R++++S  PG ++LDPF GSGT+     +  
Sbjct: 169 KDVWSVSRLHRQDPERAEHPTQKPLELVERMVLASCPPGGLVLDPFLGSGTTAVACARRG 228

Query: 246 RSFIGIEMKQDY 257
           R F G E+  +Y
Sbjct: 229 RRFAGFEINAEY 240


>gi|207742815|ref|YP_002259207.1| dna-methyltransferase (dna-modification methylase) protein
           [Ralstonia solanacearum IPO1609]
 gi|206594209|emb|CAQ61136.1| dna-methyltransferase (dna-modification methylase) protein
           [Ralstonia solanacearum IPO1609]
          Length = 272

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 124/252 (49%), Gaps = 33/252 (13%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I   + I+ + +L   SV+L+ ADPPY L   G+ Y  D           DK S  EA
Sbjct: 7   DGIFNEDCIAGIGQLADGSVNLVIADPPYGL---GKDYGNDS----------DKLSG-EA 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y A++  W+ A    L  NG++++  ++     +  ML+     ++N+I+W +  P    
Sbjct: 53  YLAWSERWIEAVLPKLARNGSVYLFCTWQYAPELFVMLKR-RLAMINEIIWDRRVPSMGG 111

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA--NEDVQMRS-------DWLIPICSG 191
             R+F + H+ + + + S   + Y F+ DA++     E  + RS        WL    + 
Sbjct: 112 STRKFSSVHDNIGFFAAS---RDYYFDVDAVRIPYDAETKKARSRKRFEGKKWLEVGYNP 168

Query: 192 SE-----RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
            +     RL  +D E+  HPTQKP  L+ R++++S  PG ++LDPF GSGT+     +  
Sbjct: 169 KDVWSVSRLHRQDPERAEHPTQKPLELVERMVLASCPPGGLVLDPFLGSGTTAVACARRG 228

Query: 246 RSFIGIEMKQDY 257
           R F G E+  +Y
Sbjct: 229 RRFAGFEINAEY 240


>gi|261393408|emb|CAX51044.1| putative DNA modification methylase [Neisseria meningitidis 8013]
 gi|325205032|gb|ADZ00486.1| adenine-specific methyltransferase HpaI [Neisseria meningitidis
           M01-240355]
          Length = 255

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 134/277 (48%), Gaps = 55/277 (19%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN---------GQLYR 59
           +N  ++++ E+++K +KG+S+ +++ +P+ S+DLI   PPYNL+ +         G  ++
Sbjct: 4   LNLEKDTLAEFRNKFLKGDSLEIMKSIPSGSIDLIVTSPPYNLKNSTGNGMKDGRGGKWK 63

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI-GTML 118
            + SL++  +D  D     E Y  + R  L    R+LK +G ++    Y++ +R+ G +L
Sbjct: 64  -NASLINGYSDHNDCMPHHE-YVEWQRNCLSEMYRLLKDDGAIF----YNHKWRVQGGLL 117

Query: 119 QNLN-----FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
           Q+ +     F +   I+WR+                             G  FN      
Sbjct: 118 QDRHDIVSGFPVRQIIIWRRKG---------------------------GINFNKGYFLP 150

Query: 174 ANEDVQMRSDWLIPICSGSERLRN-----KDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
             E + M       +C G+ +  +     ++ +  HP   P AL+ RI+ S+     +IL
Sbjct: 151 TYEVIYMICKPKFSLCPGANKYGDVWEFTQEMKNPHPAPFPVALIERIISSTN--AKVIL 208

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           DPF GSGT+   AKKL R FIGIE+  +YI +A +R+
Sbjct: 209 DPFMGSGTTAIAAKKLYREFIGIEISAEYIALAQERL 245


>gi|218960497|ref|YP_001740272.1| Modification methylase (fragment) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729154|emb|CAO80065.1| Modification methylase (fragment) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 114

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/80 (53%), Positives = 63/80 (78%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +PI  G ER++ ++G  LHPTQKPE L+  IL++S+   D+ILDPFFG+GT+G+VA +L+
Sbjct: 26  MPIVQGKERIKGENGRALHPTQKPEKLIELILLASSDENDLILDPFFGTGTTGSVASRLK 85

Query: 246 RSFIGIEMKQDYIDIATKRI 265
           R++IGIE+ +DY +IA  RI
Sbjct: 86  RNWIGIEINEDYCNIAHNRI 105


>gi|194290204|ref|YP_002006111.1| DNA-methyltransferase [Cupriavidus taiwanensis LMG 19424]
 gi|193224039|emb|CAQ70048.1| DNA-METHYLTRANSFERASE (DNA-MODIFICATION METHYLASE) PROTEIN;
           Adenine-specific methyltransferase,
           N4/N6-methyltransferase family [Cupriavidus taiwanensis
           LMG 19424]
          Length = 309

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 121/252 (48%), Gaps = 35/252 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++ + +    + +LP  SVDLI ADPPY L   G+ Y  D  L+           S +AY
Sbjct: 29  RLFQEDMFEGIARLPDGSVDLIVADPPYGL---GKDYGNDSDLL-----------SGQAY 74

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             ++  W+ A    L P GTL++  ++     +  ML+     ++N+I+W +  P     
Sbjct: 75  LDWSERWMDAVVPKLAPKGTLYLFCTWQYSPELFVMLKR-RLTMINEIIWDRRVPSMGGT 133

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE-------- 193
            R+F + H+ + + +   +A+ Y F+ D ++    D + +     P   G +        
Sbjct: 134 TRKFSSVHDNIGFFA---RARDYYFDLDPVRIPY-DPETKKARSRPRFEGKKWLEVGYNP 189

Query: 194 -------RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
                  R+  +D E+  HPTQKP  ++ R+++SS  PG ++LDPF GSGT+     +  
Sbjct: 190 KDLWSVSRIHRQDPERANHPTQKPLEIVERMVLSSCPPGGLVLDPFAGSGTTAVACLRHG 249

Query: 246 RSFIGIEMKQDY 257
           R F G E+  +Y
Sbjct: 250 RRFAGFEINPEY 261


>gi|73541991|ref|YP_296511.1| DNA methylase N-4/N-6 [Ralstonia eutropha JMP134]
 gi|72119404|gb|AAZ61667.1| DNA methylase N-4/N-6 [Ralstonia eutropha JMP134]
          Length = 304

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 123/254 (48%), Gaps = 35/254 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++ + +    + +LP  SVDL+ ADPPY L   G+ Y  D  L+           S +AY
Sbjct: 30  QLFQEDMFEGIARLPDGSVDLVVADPPYGL---GKDYGNDSDLL-----------SGDAY 75

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             ++  W+ A    L P GTL++  ++     +  ML+     ++N+I+W +  P     
Sbjct: 76  LEWSERWMDAVCPKLAPKGTLYLFCTWQYSPELFVMLKR-RLTMINEIIWDRRVPSMGGT 134

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE-------- 193
            R++ + H+ + + +   +A+ Y F+ D ++    D + +     P   G +        
Sbjct: 135 TRKYSSVHDNIGFFA---RARDYYFDLDPVRIPY-DPETKKARSRPRFEGKKWLEMGYNP 190

Query: 194 -------RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
                  R+  +D E+  HPTQKP  ++ R+++SS  PG ++LDPF GSGT+     +  
Sbjct: 191 KDLWSISRIHRQDPERANHPTQKPLEIVERMVLSSCPPGGLVLDPFAGSGTTAVACLRHG 250

Query: 246 RSFIGIEMKQDYID 259
           R F G E+  +Y++
Sbjct: 251 RRFAGFEINPEYVE 264


>gi|161528827|ref|YP_001582653.1| DNA methylase N-4/N-6 domain-containing protein [Nitrosopumilus
           maritimus SCM1]
 gi|160340128|gb|ABX13215.1| DNA methylase N-4/N-6 domain protein [Nitrosopumilus maritimus
           SCM1]
          Length = 258

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 122/259 (47%), Gaps = 32/259 (12%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA-VTDSWDKFSSFE 79
           +KI   N I  +  +P   +DL+  DPP+ +    +  + +++   + V   +++    +
Sbjct: 7   NKIYNQNCIDGMSSIPKNKIDLVITDPPFAINFKAK--KANYNRTSSRVLSGYNEIKPED 64

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YD FT +W+    R+LK +G+++V   ++N+  I   L ++ F  +N I+W+    +  
Sbjct: 65  YYD-FTFSWMTEVYRILKDSGSMYVFSGWNNLKDILRALDDVGFVTINHIIWKYQFGVVT 123

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
              ++F  +H   ++     K + + F +   K  ++    RS            L  KD
Sbjct: 124 --KKKFVTSHYHCLYVCKDDKKRKF-FPFSRFKKEDKTKDGRS------------LHYKD 168

Query: 200 -------------GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                        G++  PT+ P  L+ +IL  S++  DI+LDPF GSG    V+K L R
Sbjct: 169 KEDVWDIKREYWTGDEKTPTKLPSELIQKILEYSSEKKDIVLDPFIGSGQVAVVSKSLGR 228

Query: 247 SFIGIEMKQDYIDIATKRI 265
            ++G E+  DY   A KR+
Sbjct: 229 RYLGFEIVPDYYKFAKKRL 247


>gi|296123807|ref|YP_003631585.1| DNA methylase N-4/N-6 domain protein [Planctomyces limnophilus DSM
           3776]
 gi|296016147|gb|ADG69386.1| DNA methylase N-4/N-6 domain protein [Planctomyces limnophilus DSM
           3776]
          Length = 306

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 133/296 (44%), Gaps = 64/296 (21%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++++  + I+ L + PA SVDL FADPP+N+   G  Y       D   DS +     + 
Sbjct: 2   NQLLLEDCITGLAQQPAGSVDLAFADPPFNI---GYTY-------DVYADSKES----QQ 47

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y A+   W+ A  R L+P+GT W+         +    Q + F   + +VW  +  + N 
Sbjct: 48  YLAWCEEWIAAVYRALRPDGTFWLAIGDEYAAELKVAAQKIGFHTRSWVVWYYTFGV-NC 106

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYD--------------ALKAANEDVQMRSD-WL 185
           +  +F  +H  + +       + +TFN +              A K AN   ++  D W+
Sbjct: 107 K-FKFTRSHAHIFYFVKD--REKFTFNSEDPANRIPSARQLVYADKRANPKGRLPDDTWI 163

Query: 186 IPIC--------SGSERLRNKD-----------------------GEKLHPTQKPEALLS 214
           IP          S +  LR +D                        E  H  Q PE LL 
Sbjct: 164 IPPTVEEMARQTSATWVLRPQDLADRFTPTEDTWYFPRVAGTFKEREGFHGCQMPEQLLG 223

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
           RI+   + PG+++LDPF GS T+ AVAKKL R+++G ++ + Y+    KR+ S++P
Sbjct: 224 RIIRMCSNPGELVLDPFSGSATTLAVAKKLGRNYLGFDISEQYVTHGLKRLESIEP 279


>gi|308177941|ref|YP_003917347.1| site-specific DNA-methyltransferase [Arthrobacter arilaitensis
           Re117]
 gi|307745404|emb|CBT76376.1| site-specific DNA-methyltransferase [Arthrobacter arilaitensis
           Re117]
          Length = 308

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 129/280 (46%), Gaps = 52/280 (18%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK-------- 74
           +  G+++S+L  LP +S  LI+ DPP+N     +  R   ++V A     D+        
Sbjct: 30  VYHGDNLSILGSLPDQSFTLIYVDPPFNT--GRKQTRAQRTMVRAAEGEGDRTGFKGREY 87

Query: 75  ----------FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--N 122
                       +F+ Y +F    L    R+L  +GTL+V   Y  +  +  +L  +   
Sbjct: 88  NTELGIARSYHDTFDDYLSFIEPRLREAHRLLAEDGTLYVHLDYREVHYVKVLLDQIFGR 147

Query: 123 FWILNDIVWRKSNPMPNFRGR---RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
              LN+++W       ++  R   R+   H+T++     PK     +++D+ +   E   
Sbjct: 148 DCFLNELIWAY-----DYGARAKSRWPAKHDTILVYVKDPK----QYHFDSAEVDREPY- 197

Query: 180 MRSDWLIPICSGSERL--------------RNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
           M    + P      +L              + K G   +PTQKPE +L RI+ +S++PGD
Sbjct: 198 MAPGLVTPEKRALGKLPTDVWWHTIVSPTGKEKTG---YPTQKPEGVLRRIVAASSRPGD 254

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           ++LD F GSGT+GAVA KL R F+ I+   + I++   R+
Sbjct: 255 LVLDFFAGSGTTGAVAAKLGRQFVLIDQNPEAIEVMKARL 294


>gi|148990531|ref|ZP_01821666.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP6-BS73]
 gi|147924219|gb|EDK75317.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP6-BS73]
          Length = 325

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 139/289 (48%), Gaps = 63/289 (21%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++KG+++ +L+ + + S+DLI+ DPP+  Q   +L   + +++ +  D+W   +S E Y 
Sbjct: 3   VLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKL-SNNKNIMYSFEDTW---TSIEDYK 58

Query: 83  AFTRAWLLACRRVLKPNGTLWV----IGSYH------NIFRIGTMLQNLNFWILNDIVWR 132
            F    L  C+RVLK +G+++V    I ++H      NIF +  M Q+       +I+W 
Sbjct: 59  EFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGVD-MFQS-------EIIWN 110

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---VQMRSD------ 183
                 + +G    N H+ + + S S   K  T   +     N D   V+ + D      
Sbjct: 111 YKRWSNSKKG--LLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTI 168

Query: 184 -----------------------WLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVS 219
                                  W IP       L  K  E++ +PTQKP  LL +I+  
Sbjct: 169 YKVDNNGNYILAKEKNGVPLSDVWNIPF------LNPKAKERVGYPTQKPILLLEQIIKI 222

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +T   DI+LDPF GSGT+   +K L R+++GI++ ++ I+I  +R+ +V
Sbjct: 223 ATDKNDIVLDPFCGSGTTLVASKILNRNYMGIDLSEEAINITQQRLENV 271


>gi|163816174|ref|ZP_02207542.1| hypothetical protein COPEUT_02358 [Coprococcus eutactus ATCC 27759]
 gi|158448594|gb|EDP25589.1| hypothetical protein COPEUT_02358 [Coprococcus eutactus ATCC 27759]
          Length = 321

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 128/287 (44%), Gaps = 55/287 (19%)

Query: 15  SIFEWKDKIIKGNSIS----VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
           S FE   +I   +SIS     L++LP KS+ LI  DPPYNL+L G               
Sbjct: 31  SDFEMPAEIKLLHSISDCGVFLKQLPDKSIQLICIDPPYNLELAG--------------- 75

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR----------IGTMLQN 120
            WD    +E Y  +   W+    RVL  NG++ + G     FR          I  + +N
Sbjct: 76  -WD---IYENYIEWASKWIYEAYRVLSDNGSMVIFGGIQ--FRDAKSGDLLDIIQYIRKN 129

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA--ANED- 177
             F ++N I+W   N M   R   F N HE  IW     K+  Y F+ D+++   + ED 
Sbjct: 130 TKFKLVNTIIWHYKNGMSAHRF--FANRHEEAIWLV---KSNDYYFDLDSVRVPYSEEDL 184

Query: 178 -VQMRSDWLIPICSGSE----------RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGD 225
            V +R   L P  +             RL     E++ HPTQKP A++ R + + + PG 
Sbjct: 185 KVALRDKRLNPETTRKGKNPTNVWEIGRLNGNSKERVGHPTQKPVAIIERFIKALSYPGA 244

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
            +LD F GSGT G V     R+ +  +     ++   K I+ ++ LG
Sbjct: 245 TVLDFFAGSGTVGRVCINEGRNCLMCDSDNKSLEYFAKHISLMEELG 291


>gi|296142048|gb|ADG95998.1| N6-adenine methyltransferase [Helicobacter pylori]
          Length = 214

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/207 (33%), Positives = 93/207 (44%), Gaps = 23/207 (11%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDK-FSSFEAYDAFTRAWLLACRRVLK 97
           VD I  DPPYN+ +         +    +    WDK F   E        W+     ++ 
Sbjct: 23  VDAIITDPPYNISVKNHFSTLKSAKRQGIDFGEWDKNFRLLE--------WIARYAPLVN 74

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
           PNG + +  SY  I  I   L+   F + + I W KSNPMP    RR+    E  +WA  
Sbjct: 75  PNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKSNPMPRNLNRRYVQDTEFALWAVK 134

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
             K   + FN    K  NE          P+ SG ER++       HPTQK  AL+ +I+
Sbjct: 135 --KKARWVFN----KPKNEKYLRPLILKSPVVSGLERVK-------HPTQKSLALMEKII 181

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKL 244
              T P DI+LDPF GSGT+G   K L
Sbjct: 182 SIHTNPNDIVLDPFMGSGTTGLACKNL 208


>gi|88604170|ref|YP_504348.1| DNA methylase N-4/N-6 [Methanospirillum hungatei JF-1]
 gi|88189632|gb|ABD42629.1| DNA methylase N-4/N-6 [Methanospirillum hungatei JF-1]
          Length = 329

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 124/255 (48%), Gaps = 24/255 (9%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G+ I     +P  +VDLI  DPPY ++   +L+R  +     VTD + +  + E Y++FT
Sbjct: 14  GDCIKGAALIPDNTVDLIITDPPYGIE-GDKLHRHYNRDESFVTDGYVEIPA-EEYESFT 71

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
           R W+L   R+L+P G+L+++  Y ++  I   L   +   +N I+WR +  +  F   ++
Sbjct: 72  RDWILQAERILRPGGSLYIVSGYTHLRHILNALYETSLEEVNHIIWRYNFGV--FTSLKY 129

Query: 146 QNAH-ETLIWASPSPKAKGYTFNYDALKAANE--------DVQMRSD-WLIPICSGSERL 195
            ++H   L +A P  K    TFN +   + +E        + Q R D W+I       ++
Sbjct: 130 VSSHYHILFYAKPGGKR---TFNTECRFSLSEKDENGGSLNYQDREDVWIINREYKPGKV 186

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +NK+       + P ALLS+I+  S+  GD++ D F G  ++   A  L R   G E+  
Sbjct: 187 KNKN-------ELPTALLSKIIQYSSNEGDLVCDLFLGGFSTAKTAIGLLRRATGFEISP 239

Query: 256 DYIDIATKRIASVQP 270
              D     + +V P
Sbjct: 240 VMYDAKIDEMMAVVP 254


>gi|295108399|emb|CBL22352.1| DNA modification methylase [Ruminococcus obeum A2-162]
          Length = 321

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 128/287 (44%), Gaps = 55/287 (19%)

Query: 15  SIFEWKDKIIKGNSIS----VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
           S FE   +I   +SIS     L++LP KS+ LI  DPPYNL+L G               
Sbjct: 31  SDFEMPAEIKLLHSISDCGDFLKQLPDKSIQLICIDPPYNLELAG--------------- 75

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR----------IGTMLQN 120
            WD    +E Y  +   W+    RVL  NG++ + G     FR          I  + +N
Sbjct: 76  -WD---IYENYIEWASKWIDEAYRVLSDNGSMVIFGGIQ--FRDAKSGDLLDIIQYIRKN 129

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA--ANED- 177
             F ++N I+W   N M   R   F N HE  IW     K+  Y F+ D+++   + ED 
Sbjct: 130 TKFKLVNTIIWHYKNGMSAHRF--FANRHEEAIWLV---KSNNYYFDLDSVRVPYSEEDL 184

Query: 178 -VQMRSDWLIPICSGSE----------RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGD 225
            V +R   L P  +             RL     E++ HPTQKP A++ R + + + PG 
Sbjct: 185 KVALRDKRLNPETTRKGKNPTNVWEIGRLNGNSKERVGHPTQKPVAIIERFIKALSYPGA 244

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
            +LD F GSGT G V     R+ +  +     +D   K ++ ++ LG
Sbjct: 245 TVLDFFAGSGTVGRVCINEGRNCLMCDSDNKSLDYFAKHLSLMEELG 291


>gi|212639015|ref|YP_002315535.1| adenine specific DNA methylase Mod [Anoxybacillus flavithermus WK1]
 gi|212560495|gb|ACJ33550.1| Adenine specific DNA methylase Mod [Anoxybacillus flavithermus WK1]
          Length = 589

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 104/409 (25%), Positives = 167/409 (40%), Gaps = 94/409 (22%)

Query: 19  WKDKIIKGNSISVLEKLPAK---SVDLIFADPPYN--------LQLNGQLYRPDHSLVDA 67
           W +KI  G+++ V+  L  +    + LI+ DPP++        +Q+ G      +SL + 
Sbjct: 53  WMNKIFWGDNLQVMSHLLKEFRGKIKLIYIDPPFDSKADYKKRIQVRGNSTVSHNSLFEE 112

Query: 68  --VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL---- 121
              TD W    S + Y  F    L+  R +L  +G+++V   +H    I  +L  +    
Sbjct: 113 KQYTDIW----SNDEYLQFLYERLILMRELLAEDGSIFVHTDWHKSHHIRCLLDEVFGDS 168

Query: 122 -----NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
                      +I+W  S  +     ++F+  HE + W +   K+  Y FN D ++    
Sbjct: 169 GDEMKKAGFKGEIIWYFS--LIGGNAKKFEKNHENIYWYT---KSSEYIFNKDDVR---- 219

Query: 177 DVQMRSDWLIPICSGSERLR-------NKDGEKL-------------------------- 203
             Q  S   +  C   E  R        +DGEKL                          
Sbjct: 220 --QPYSKEFLEQCKRDEEGRLYYTRGMGRDGEKLNRKHISYIHPLGKAPSDVWTDIKNYS 277

Query: 204 --------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                   +PTQKPEAL+ RI+ +++ PGDI+ D F GSGT+ AVA KL R FIG ++  
Sbjct: 278 PTGKERLGYPTQKPEALIERIIKAASNPGDIVFDCFMGSGTTQAVAMKLGRRFIGSDINL 337

Query: 256 DYIDIATKRIASV---QPLGNIELTVLTGKRTE----PRVAFNLLVERGLIQPGQILTNA 308
             +   TKR+ ++    P       V      E    P  A  LL+E   IQP    +  
Sbjct: 338 GAVQTTTKRLLNILREDPDLKTGFEVYNVNNYEFFRNPVQAKELLIEALEIQPLPNNSLY 397

Query: 309 QGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGE 357
            G +      DG ++   ++   +R+  K    E    +++  FEK  E
Sbjct: 398 DGEL------DGRMV---KIMPTNRIATKADLGELIQNFDYRLFEKRRE 437


>gi|15901283|ref|NP_345887.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae TIGR4]
 gi|14972920|gb|AAK75527.1| putative type II DNA modification methyltransferase [Streptococcus
           pneumoniae TIGR4]
          Length = 396

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 139/289 (48%), Gaps = 63/289 (21%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++KG+++ +L+ + + S+DLI+ DPP+  Q   +L   + +++ +  D+W   +S E Y 
Sbjct: 3   VLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSN-NKNIMYSFEDTW---TSIEDYK 58

Query: 83  AFTRAWLLACRRVLKPNGTLWV----IGSYH------NIFRIGTMLQNLNFWILNDIVWR 132
            F    L  C+RVLK +G+++V    I ++H      NIF +  M Q+       +I+W 
Sbjct: 59  EFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGVD-MFQS-------EIIWN 110

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---VQMRSD------ 183
                 + +G    N H+ + + S S   K  T   +     N D   V+ + D      
Sbjct: 111 YKRWSNSKKG--LLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTI 168

Query: 184 -----------------------WLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVS 219
                                  W IP       L  K  E++ +PTQKP  LL +I+  
Sbjct: 169 YKVDNNGNYILAKEKNGVPLSDVWNIPF------LNPKAKERVGYPTQKPILLLEQIIKI 222

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +T   DI+LDPF GSGT+   +K L R+++GI++ ++ I+I  +R+ +V
Sbjct: 223 ATDKNDIVLDPFCGSGTTLVASKILNRNYMGIDLSEEAINITQQRLENV 271


>gi|32477674|ref|NP_870668.1| adenine-specific methyltransferase [Rhodopirellula baltica SH 1]
 gi|32448228|emb|CAD77745.1| adenine-specific methyltransferase [Rhodopirellula baltica SH 1]
          Length = 608

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 120/282 (42%), Gaps = 57/282 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I   + I  + +LPA  +DL FADPP+N+   G  Y           D +D     + Y
Sbjct: 14  QIHVSDCIDGMAELPAGCIDLAFADPPFNI---GYTY-----------DVYDDSLESDEY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             ++ +W+    RVL  +G  W+         +  + Q + F   + ++W  +  +    
Sbjct: 60  IQWSESWIRGVHRVLADDGAFWLAIGDEYAAELKVLAQQIGFQCRSWVIWYYTFGV--HC 117

Query: 142 GRRFQNAHETLIW------------ASPS---PKAKGYTFNYDALKAANEDVQMRSD--- 183
             +F  +H  L                PS   P A+   +N    + AN   +M  D   
Sbjct: 118 KYKFTRSHAHLFHFVKDEKHFKFNADDPSVRVPSARQLVYND---RRANSKGRMPDDTWI 174

Query: 184 ----------------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
                           W  P  +G+ + R       H  Q PE LL RI+ + + PGD +
Sbjct: 175 LRPQDLPYGFTADEDIWYFPRVAGTFKERAG----FHGCQMPEQLLGRIIRACSDPGDKV 230

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           LDPF GS T+ AVAKKL R FI  EM ++Y+ + T+R+  ++
Sbjct: 231 LDPFSGSATTVAVAKKLGREFISFEMSEEYVSLGTERLEQIR 272


>gi|262199051|ref|YP_003270260.1| DNA methylase N-4/N-6 domain protein [Haliangium ochraceum DSM
           14365]
 gi|262082398|gb|ACY18367.1| DNA methylase N-4/N-6 domain protein [Haliangium ochraceum DSM
           14365]
          Length = 319

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 136/278 (48%), Gaps = 41/278 (14%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW-DKFSSFE 79
           D++I  +++ V+++L    +DL++ DPP+     G+L R   +  DA   ++ D   + E
Sbjct: 25  DRLIHADNLKVMDELGDGCIDLVYIDPPF---ATGKLRRGREAADDAPALAFRDVPDNPE 81

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPM 137
            + A+    L+ACRR+L  +G+L+V   Y  +  +   L  +      +N+I+W  S  +
Sbjct: 82  DFVAWLEPRLVACRRLLAGHGSLFVHLDYRTVHYVKVCLDRIFGRSRFVNEIIWCYS--V 139

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED--------------VQMRSD 183
                RRF   H+T++W +   ++  Y F  DA++   +               VQ ++D
Sbjct: 140 GGKSRRRFARKHDTILWYT---RSGDYAFFPDAVRVPRKGGSHMRVVRDESGALVQEKTD 196

Query: 184 ------WLIPICSGS---------ERLRNKDGEKLH-PTQKPEALLSRILVSSTKPGDII 227
                 +  P+ +G          E L   D E+   PTQKPE LL RI+ ++  P  ++
Sbjct: 197 RRTGKVYRYPVAAGKIPEDWWADIELLNRGDRERTGWPTQKPERLLERIIGATAGPDAVV 256

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
            D F G+GT+ AVA++L R F+  ++    +  A +R+
Sbjct: 257 ADWFCGAGTTAAVAQRLGRRFLTTDIASSAVACAEQRL 294


>gi|315154648|gb|EFT98664.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0043]
          Length = 393

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 136/277 (49%), Gaps = 39/277 (14%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +I G++++ L+K+ + S+DLI+ DPP+  Q   +L   ++    +  DSW+   S   Y 
Sbjct: 3   LILGDNLNELKKIESDSIDLIYLDPPFFTQKKQKLKNKENKEY-SFDDSWE---SIAEYT 58

Query: 83  AFTRAWLLACRRVLKPNGTLWV---IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            F +  L  C+RVLK  G++++     + H +      +  +N +  ++I+W       +
Sbjct: 59  TFIKDRLFECKRVLKETGSIFLHCDKTASHYLRVCLDEVFGMNMF-QSEIIWNYKRWSNS 117

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
            +G    N H+ + + S + K K  T   D     N D Q+ +D +    S ++   +++
Sbjct: 118 KKG--LLNNHQNIYFYSKTGKFKFNTIYTDYSSTTNID-QILADRIKDENSKTKYKLDEN 174

Query: 200 GEKL----------------------------HPTQKPEALLSRILVSSTKPGDIILDPF 231
           GE L                            +PTQKP  LL +I+  +T+  DIILDPF
Sbjct: 175 GEPLIGKEKKGVPLSDVWNIPYLNPKAKERTGYPTQKPILLLEQIIKLTTEENDIILDPF 234

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            GSGT+   +K L+R +IGI+  +D I +A +R+ +V
Sbjct: 235 CGSGTTLVASKILKRRYIGIDQSKDAIKLAEERLKNV 271


>gi|154150048|ref|YP_001403666.1| DNA methylase N-4/N-6 domain-containing protein [Candidatus
           Methanoregula boonei 6A8]
 gi|153998600|gb|ABS55023.1| DNA methylase N-4/N-6 domain protein [Methanoregula boonei 6A8]
          Length = 239

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 126/245 (51%), Gaps = 28/245 (11%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA-VTDSWDKFSSFE 79
           D + +G++ ++L+KLPA SVDLI  DPP+ +    Q  R +++     V + + +  + E
Sbjct: 10  DTLYEGDACALLKKLPAGSVDLIVTDPPFAIDFTAQ--RLNYNRTGGNVIEGYREIPAAE 67

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y  FTR W+    R L P+G+++V   ++ +  I   +       +N ++W+    +  
Sbjct: 68  -YGKFTRRWIKQATRALSPSGSMYVFSGWNRLRDILEGIDAAGLVTINHLIWKYQFGV-- 124

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           F   ++  +H  +++     K   YTFN   L    EDV     W+I          N++
Sbjct: 125 FTKNKYVTSHYHILFVVKDRKR--YTFN--KLDHYPEDV-----WVI----------NRE 165

Query: 200 ---GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
              G+K  PT+ P+ L+ +I+  S+ PGD++LDPF GSGT   VA+   R F+G E+  +
Sbjct: 166 YWKGKKKTPTKLPKELVQKIIRYSSNPGDLVLDPFLGSGTVAVVARNECRHFLGFEVVPE 225

Query: 257 YIDIA 261
           Y+  A
Sbjct: 226 YVSFA 230


>gi|288800806|ref|ZP_06406263.1| DNA (cytosine-5-)-methyltransferase [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288332267|gb|EFC70748.1| DNA (cytosine-5-)-methyltransferase [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 317

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 137/300 (45%), Gaps = 55/300 (18%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
           +  L++  +++S+ +  DK    +   V++  P    DLI  DPPYNL  +   ++    
Sbjct: 23  RKELSMLSDKSSVDDVIDKTFNQDLFDVIDFFPKHFADLIIIDPPYNLSKDFAGFK---- 78

Query: 64  LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
              A  D+        +Y ++ ++WL     +LKPNG+++V   + +   I  +L     
Sbjct: 79  -FKATDDN--------SYISYIKSWLPKVLELLKPNGSVYVCCDWKSTSAIYQVLSEYTI 129

Query: 124 WILNDIVWRKSNPMPNFRGRR--FQNAHETLIWASPSPKAKGYTFNYDALK--------- 172
            + N I W++       RG +  ++NA E + +   +   K Y F+ D++          
Sbjct: 130 -VKNRITWQREKG----RGAKTNWKNAMEDIWFGVLN--EKNYFFDVDSVMQKRKVFAPY 182

Query: 173 ---------AANEDVQMR--------SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
                       E+   R         D  +P  S SE   N D    HPTQKPE L+++
Sbjct: 183 KVDGTPKDWEETEEGNFRMTYPSNFWDDISVPYWSMSE---NTD----HPTQKPEKLIAK 235

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           ++++S   G ++ DPF GSGT+  VAKKL R + GIE  ++Y  +  KR+       NI+
Sbjct: 236 LILASCPKGGVVFDPFLGSGTTSVVAKKLGRHYCGIEFNEEYALLTQKRLNMADRNRNIQ 295


>gi|327539140|gb|EGF25770.1| adenine-specific methyltransferase [Rhodopirellula baltica WH47]
          Length = 608

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 120/282 (42%), Gaps = 57/282 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I   + I  + +LPA  +DL FADPP+N+   G  Y           D +D     + Y
Sbjct: 14  QIHVSDCIDGMAELPAGCIDLAFADPPFNI---GYTY-----------DVYDDSLESDEY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             ++ +W+    RVL  +G  W+         +  + Q + F   + ++W  +  +    
Sbjct: 60  IQWSESWIRGVHRVLADDGAFWLAIGDEYAAELKVLAQQIGFQCRSWVIWYYTFGV--HC 117

Query: 142 GRRFQNAHETLIW------------ASPS---PKAKGYTFNYDALKAANEDVQMRSD--- 183
             +F  +H  L                PS   P A+   +N    + AN   +M  D   
Sbjct: 118 KYKFTRSHAHLFHFVKDEKHFKFNADDPSVRVPSARQLVYND---RRANSKGRMPDDTWI 174

Query: 184 ----------------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
                           W  P  +G+ + R       H  Q PE LL RI+ + + PGD +
Sbjct: 175 LRPQDLPYGFTADEDIWYFPRVAGTFKERAG----FHGCQMPEQLLGRIIRACSDPGDKV 230

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           LDPF GS T+ AVAKKL R FI  EM ++Y+ + T+R+  ++
Sbjct: 231 LDPFSGSATTVAVAKKLGREFISFEMSEEYVSLGTERLEQIR 272


>gi|320159894|ref|YP_004173118.1| methyltransferase [Anaerolinea thermophila UNI-1]
 gi|319993747|dbj|BAJ62518.1| methyltransferase [Anaerolinea thermophila UNI-1]
          Length = 391

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/275 (33%), Positives = 124/275 (45%), Gaps = 60/275 (21%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           E  ++I  G+S+ VL+K+P  S+DLIF  PPYN  L  +     H         WD +  
Sbjct: 145 EMTNQIFCGDSLEVLKKIPDNSIDLIFTSPPYNFGLEYERQDDAHK--------WDLY-- 194

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWV---------IGSYH---NIFRIGTMLQNLNFWI 125
           FE   A        C RVLK  G + V         I S+H   N F    M+     W 
Sbjct: 195 FEKLFAI----FDECIRVLKFGGRIAVNIQPLFSDYIPSHHLISNFFISRRMI-----W- 244

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETL--IWASPSPKAKGYTFNYDALKAA--------- 174
             +I+W K+N           N   T    W SPS     YT+ +  + A          
Sbjct: 245 KGEILWEKNN----------YNCKYTAWGSWKSPSNPYLKYTWEFIEIFAKGTLKKSGDP 294

Query: 175 -NEDVQMRS--DWLIPICS-GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
            N D+      +W++   S   ER   + G   HP   PE L  R++   +  GDI+LDP
Sbjct: 295 KNADITSDEFKEWVVAKWSIAPERKMKEFG---HPAMFPEKLAERVIKLFSFVGDIVLDP 351

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           F G GT+ AVA+KL R FIGI++ Q+Y DIA KR+
Sbjct: 352 FNGVGTTTAVAQKLGRKFIGIDISQEYCDIAQKRL 386


>gi|149002824|ref|ZP_01827750.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP14-BS69]
 gi|147759118|gb|EDK66112.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP14-BS69]
          Length = 325

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 138/289 (47%), Gaps = 63/289 (21%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++KG+++ +L+ + + S+DLI+ DPP+  Q   +L   + +++ +  D+W   +S E Y 
Sbjct: 3   VLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKL-SNNKNIMYSFEDTW---TSIEDYK 58

Query: 83  AFTRAWLLACRRVLKPNGTLWV----IGSYH------NIFRIGTMLQNLNFWILNDIVWR 132
            F    L  C+RVLK +G+++V    I ++H      NIF    M Q+       +I+W 
Sbjct: 59  EFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFG-ADMFQS-------EIIWN 110

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---VQMRSD------ 183
                 + +G    N H+ + + S S   K  T   +     N D   V+ + D      
Sbjct: 111 YKRWSNSKKG--LLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTI 168

Query: 184 -----------------------WLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVS 219
                                  W IP       L  K  E++ +PTQKP  LL +I+  
Sbjct: 169 YKVDNNGNYILAKEKNGVPLSDVWNIPF------LNPKAKERVGYPTQKPILLLEQIIKI 222

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +T   DI+LDPF GSGT+   +K L R+++GI++ ++ I+I  +R+ +V
Sbjct: 223 ATDKNDIVLDPFCGSGTTLVASKILNRNYMGIDLSEEAINITQQRLENV 271


>gi|149007299|ref|ZP_01830957.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP18-BS74]
 gi|237650442|ref|ZP_04524694.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           CCRI 1974]
 gi|237821039|ref|ZP_04596884.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           CCRI 1974M2]
 gi|147761103|gb|EDK68071.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP18-BS74]
 gi|332200872|gb|EGJ14944.1| DNA methylase family protein [Streptococcus pneumoniae GA41317]
 gi|332201882|gb|EGJ15952.1| DNA methylase family protein [Streptococcus pneumoniae GA47368]
          Length = 325

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 138/289 (47%), Gaps = 63/289 (21%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++KG+++ +L+ + + S+DLI+ DPP+  Q   +L   + +++ +  D+W   +S E Y 
Sbjct: 3   VLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKL-SNNKNIMYSFEDTW---TSIEDYK 58

Query: 83  AFTRAWLLACRRVLKPNGTLWV----IGSYH------NIFRIGTMLQNLNFWILNDIVWR 132
            F    L  C+RVLK +G+++V    I ++H      NIF    M Q+       +I+W 
Sbjct: 59  EFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFG-ADMFQS-------EIIWN 110

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---VQMRSD------ 183
                 + +G    N H+ + + S S   K  T   +     N D   V+ + D      
Sbjct: 111 YKRWSNSKKG--LLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTI 168

Query: 184 -----------------------WLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVS 219
                                  W IP       L  K  E++ +PTQKP  LL +I+  
Sbjct: 169 YKVDNNGNYILAKEKNGVPLSDVWNIPF------LNPKAKERVGYPTQKPILLLEQIIKI 222

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +T   DI+LDPF GSGT+   +K L R+++GI++ ++ I+I  +R+ +V
Sbjct: 223 ATDKNDIVLDPFCGSGTTLVASKILNRNYMGIDLSEEAINITQQRLENV 271


>gi|269925476|ref|YP_003322099.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269789136|gb|ACZ41277.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 289

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 127/285 (44%), Gaps = 54/285 (18%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYN-----------LQLNGQLYRPDHSLVDAVT 69
           +KI  G+++ VLE LP+ SV+LI+ DPP+N           +  + Q  R        +T
Sbjct: 5   NKIFFGDNLRVLESLPSNSVNLIYIDPPFNTGRRQVRISMSVDRDDQGDRKGFGGYKYLT 64

Query: 70  DSWDKFSSFEAYD---AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL----N 122
               K S  + YD   AF    L    RVL  NG L+    Y  +     +L ++    N
Sbjct: 65  KVLGKLSFDDIYDDYLAFLEPRLREAHRVLTANGALYFHIDYREVHYCKILLDSIFGRDN 124

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
           F  LN+I+W  +        R++   H+ +++         Y FN D +         R 
Sbjct: 125 F--LNEIIW--AYDYGGRSKRKWPTKHDNILYYVKD--RNNYVFNADEID--------RL 170

Query: 183 DWLIPICSGSERLR-------------------NKDGEKLHPTQKPEALLSRILVSSTKP 223
            ++ P   G ++ +                    K G   +PTQKP A+L RI+ +S+ P
Sbjct: 171 PYMAPSLVGGDKAKLGKLPTDVWWQTIVSPTGKEKTG---YPTQKPLAILERIIRASSCP 227

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           GDI+LD F GSGT+G  A KL RSFI ++  ++ I +   R   V
Sbjct: 228 GDIVLDFFAGSGTTGVAAHKLGRSFILVDNNEEAIRVMRSRFRDV 272


>gi|1171049|sp|P14243|MTC9_CITFR RecName: Full=Modification methylase Cfr9I; Short=M.Cfr9I; AltName:
           Full=N(4)- cytosine-specific methyltransferase Cfr9I
 gi|40464|emb|CAA34887.1| DNA (Cytosine-4)-Methyltransferase [Citrobacter freundii]
          Length = 300

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 129/284 (45%), Gaps = 65/284 (22%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           + +G+++SVL +LP+ SV  I   PPY    +  ++ Q+      L  ++T   ++  + 
Sbjct: 28  LFEGDALSVLRRLPSGSVRCIVTSPPYWGLRDYGIDEQI-----GLESSMTQFLNRLVTI 82

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWV-IGSYHN--------------------------- 110
                F+ A     +RVL  +GTLWV IG  +                            
Sbjct: 83  -----FSEA-----KRVLTDDGTLWVNIGDGYTSGNRGYRAPDKKNPARAMAVRPDTPEG 132

Query: 111 ---------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
                     +R+   LQ   +++ +DIVW K N MP     R   +HE L   +   K+
Sbjct: 133 LKPKDLIGIPWRLAFALQEDGWYLRSDIVWNKPNAMPESVKDRPTRSHEFLFMLT---KS 189

Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
           + Y ++++A++   +    R+   +        +  K     H    P  L+   +++ST
Sbjct: 190 EKYYYDWEAVREEKDSGGFRNRRTV------WNVNTKPFAGAHFATFPTELIRPCILAST 243

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           KPGD +LDPFFGSGT G V ++  R ++GIE+  +Y+DIA  R+
Sbjct: 244 KPGDYVLDPFFGSGTVGVVCQQEDRQYVGIELNPEYVDIAVNRL 287


>gi|22091198|ref|NP_666012.1| adenine methyltransferase [Natrialba phage PhiCh1]
 gi|289594309|ref|YP_003482316.1| DNA methylase N-4/N-6 domain protein [Natrialba magadii ATCC 43099]
 gi|6118090|gb|AAF04014.1|AF172444_1 adenine methyltransferase [Natrialba phage PhiCh1]
 gi|289533406|gb|ADD07754.1| DNA methylase N-4/N-6 domain protein [Natrialba magadii ATCC 43099]
          Length = 419

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 120/246 (48%), Gaps = 40/246 (16%)

Query: 33  EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLAC 92
           ++L   SVDL+  DPPY + ++        S+  + T + D      A   F R      
Sbjct: 183 QRLEGDSVDLVLTDPPYGIDIDLSETLGSRSVQHSGTVANDDLDG--ALSVF-RDAAKEM 239

Query: 93  RRVLKPNGTLWVIGSY--HNIFRIGTMLQNLNFWILNDIVWRKSNP--MPNFR--GRRFQ 146
           RRV+KP G ++V  S+  +++FR   +L +  F + N IVW K+ P   PNF   G  + 
Sbjct: 240 RRVVKPGGHVYVFASWKTYDLFR--DILVDEEFTVRNCIVWCKTVPNNQPNFGTGGTNWG 297

Query: 147 NAHETLIWAS-PSPKAKGYTFNYDALKAANEDVQMRSDWLIP--ICSGSERLRNKDGEKL 203
             HE +I+A+  SP+   +T               R D ++     SG+E          
Sbjct: 298 LQHEFVIYATLDSPRPLKHT---------------RPDIIVHKHSTSGNE---------- 332

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD-YIDIAT 262
           HPTQKP  LL   +  S++PGD++LDPF GSG++   + +  R  IG E++ D Y ++  
Sbjct: 333 HPTQKPVGLLEEFIEQSSQPGDVVLDPFAGSGSTAVASVQTDRECIGFELEGDVYQEVVD 392

Query: 263 KRIASV 268
           +RI+  
Sbjct: 393 RRISEA 398


>gi|237740968|ref|ZP_04571449.1| modification methylase HinfI [Fusobacterium sp. 4_1_13]
 gi|229431012|gb|EEO41224.1| modification methylase HinfI [Fusobacterium sp. 4_1_13]
          Length = 90

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/77 (55%), Positives = 55/77 (71%)

Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
          +KI KG+SI VL+  P++SVD IFADPPY +Q  G+L R D +  + V D WDKF SF+ 
Sbjct: 10 NKIYKGDSIEVLKTFPSESVDFIFADPPYYMQTEGELLRTDGTKFNGVEDEWDKFWSFQD 69

Query: 81 YDAFTRAWLLACRRVLK 97
          YD FT+ WL  C+RVLK
Sbjct: 70 YDNFTKQWLGECKRVLK 86


>gi|15903330|ref|NP_358880.1| type II DNA modification (methyltransferase [Streptococcus
           pneumoniae R6]
 gi|116516980|ref|YP_816726.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae D39]
 gi|15458929|gb|AAL00091.1| DNA modification methyltransferase [Streptococcus pneumoniae R6]
 gi|116077556|gb|ABJ55276.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae D39]
          Length = 392

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 138/289 (47%), Gaps = 63/289 (21%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++KG+++ +L+ + + S+DLI+ DPP+  Q   +L   + +++ +  D+W   +S E Y 
Sbjct: 3   VLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSN-NKNIMYSFEDTW---TSIEDYK 58

Query: 83  AFTRAWLLACRRVLKPNGTLWV----IGSYH------NIFRIGTMLQNLNFWILNDIVWR 132
            F    L  C+RVLK +G+++V    I ++H      NIF    M Q+       +I+W 
Sbjct: 59  EFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFG-ADMFQS-------EIIWN 110

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---VQMRSD------ 183
                 + +G    N H+ + + S S   K  T   +     N D   V+ + D      
Sbjct: 111 YKRWSNSKKG--LLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTI 168

Query: 184 -----------------------WLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVS 219
                                  W IP       L  K  E++ +PTQKP  LL +I+  
Sbjct: 169 YKVDNNGNYILAKEKNGVPLSDVWNIPF------LNPKAKERVGYPTQKPILLLEQIIKI 222

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +T   DI+LDPF GSGT+   +K L R+++GI++ ++ I+I  +R+ +V
Sbjct: 223 ATDKNDIVLDPFCGSGTTLVASKILNRNYMGIDLSEEAINITQQRLENV 271


>gi|148984771|ref|ZP_01818024.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP3-BS71]
 gi|149011671|ref|ZP_01832867.1| nicotinate phosphoribosyltransferase [Streptococcus pneumoniae
           SP19-BS75]
 gi|168483942|ref|ZP_02708894.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           CDC1873-00]
 gi|168486127|ref|ZP_02710635.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           CDC1087-00]
 gi|182684389|ref|YP_001836136.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae CGSP14]
 gi|194398500|ref|YP_002038079.1| type II DNA modification methyltransferase [Streptococcus
           pneumoniae G54]
 gi|221232165|ref|YP_002511318.1| DNA modification methylase [Streptococcus pneumoniae ATCC 700669]
 gi|225859198|ref|YP_002740708.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           70585]
 gi|225860791|ref|YP_002742300.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298229942|ref|ZP_06963623.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           str. Canada MDR_19F]
 gi|298255682|ref|ZP_06979268.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           str. Canada MDR_19A]
 gi|298502615|ref|YP_003724555.1| type II DNA modification methyltransferase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|303253831|ref|ZP_07339960.1| putative DNA modification methylase [Streptococcus pneumoniae
           BS455]
 gi|303259027|ref|ZP_07345006.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP-BS293]
 gi|303261711|ref|ZP_07347658.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP14-BS292]
 gi|303264380|ref|ZP_07350300.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae BS397]
 gi|303267450|ref|ZP_07353303.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae BS457]
 gi|303269308|ref|ZP_07355081.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae BS458]
 gi|307127001|ref|YP_003879032.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           670-6B]
 gi|18699604|gb|AAL78652.1|AF469000_1 XbaI methylase [Streptococcus pneumoniae]
 gi|147764102|gb|EDK71034.1| nicotinate phosphoribosyltransferase [Streptococcus pneumoniae
           SP19-BS75]
 gi|147922793|gb|EDK73909.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP3-BS71]
 gi|172042720|gb|EDT50766.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           CDC1873-00]
 gi|182629723|gb|ACB90671.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae CGSP14]
 gi|183570735|gb|EDT91263.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           CDC1087-00]
 gi|194358167|gb|ACF56615.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae G54]
 gi|220674626|emb|CAR69192.1| putative DNA modification methylase [Streptococcus pneumoniae ATCC
           700669]
 gi|225722056|gb|ACO17910.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           70585]
 gi|225727628|gb|ACO23479.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238210|gb|ADI69341.1| type II DNA modification methyltransferase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|301800290|emb|CBW32913.1| putative DNA modification methylase [Streptococcus pneumoniae
           OXC141]
 gi|301802166|emb|CBW34907.1| putative DNA moodification methylase [Streptococcus pneumoniae
           INV200]
 gi|302599204|gb|EFL66221.1| putative DNA modification methylase [Streptococcus pneumoniae
           BS455]
 gi|302637291|gb|EFL67779.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP14-BS292]
 gi|302639970|gb|EFL70426.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP-BS293]
 gi|302641138|gb|EFL71512.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae BS458]
 gi|302643011|gb|EFL73305.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae BS457]
 gi|302646192|gb|EFL76419.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae BS397]
 gi|306484063|gb|ADM90932.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           670-6B]
 gi|327389617|gb|EGE87962.1| DNA methylase family protein [Streptococcus pneumoniae GA04375]
 gi|332074753|gb|EGI85227.1| DNA methylase family protein [Streptococcus pneumoniae GA17545]
          Length = 396

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 138/289 (47%), Gaps = 63/289 (21%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++KG+++ +L+ + + S+DLI+ DPP+  Q   +L   + +++ +  D+W   +S E Y 
Sbjct: 3   VLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSN-NKNIMYSFEDTW---TSIEDYK 58

Query: 83  AFTRAWLLACRRVLKPNGTLWV----IGSYH------NIFRIGTMLQNLNFWILNDIVWR 132
            F    L  C+RVLK +G+++V    I ++H      NIF    M Q+       +I+W 
Sbjct: 59  EFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFG-ADMFQS-------EIIWN 110

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---VQMRSD------ 183
                 + +G    N H+ + + S S   K  T   +     N D   V+ + D      
Sbjct: 111 YKRWSNSKKG--LLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTI 168

Query: 184 -----------------------WLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVS 219
                                  W IP       L  K  E++ +PTQKP  LL +I+  
Sbjct: 169 YKVDNNGNYILAKEKNGVPLSDVWNIPF------LNPKAKERVGYPTQKPILLLEQIIKI 222

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +T   DI+LDPF GSGT+   +K L R+++GI++ ++ I+I  +R+ +V
Sbjct: 223 ATDKNDIVLDPFCGSGTTLVASKILNRNYMGIDLSEEAINITQQRLENV 271


>gi|321156960|emb|CBW38949.1| Cytosine specific DNA methyltransferase [Streptococcus phage V22]
 gi|321157075|emb|CBW39062.1| Cytosine specific DNA methyltransferase [Streptococcus phage 34117]
 gi|321157225|emb|CBW39209.1| Cytosine specific DNA methyltransferase [Streptococcus phage 8140]
          Length = 231

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 109/247 (44%), Gaps = 30/247 (12%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           DKIIK + +  +E +P   +DLI  DPPY +       +  H   + + +  +       
Sbjct: 4   DKIIKKDVLEFMETIPDNKIDLIVTDPPYLINYKTNWRKEKHKFSNVIKNDNNP------ 57

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                + ++  C R+LK +  +++  S+  +      ++   F + N I+WRK+N     
Sbjct: 58  --ELIKEYIKECYRILKDDTAIYIFCSFDKVDFFKKEIEKY-FSVKNIIIWRKNNHTAGD 114

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
              +F   +E +I A+   K     FN + L    +  ++ SD L               
Sbjct: 115 LEAQFGKQYEMIILANKGRKK----FNGERLTDVWDFKRVSSDEL--------------- 155

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
             LH  QKP  L+ R +V  +  GD + D F GSGT+   A +  R FIG E+ + Y  I
Sbjct: 156 --LHQNQKPIELIKRCIVKHSDVGDTVFDGFMGSGTTALAALETDRHFIGTEIDEYYFGI 213

Query: 261 ATKRIAS 267
           A +RI +
Sbjct: 214 AEERIKN 220


>gi|148993008|ref|ZP_01822602.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP9-BS68]
 gi|169834116|ref|YP_001694863.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           Hungary19A-6]
 gi|225857062|ref|YP_002738573.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           P1031]
 gi|147928209|gb|EDK79226.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP9-BS68]
 gi|168996618|gb|ACA37230.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           Hungary19A-6]
 gi|225725859|gb|ACO21711.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           P1031]
          Length = 396

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 138/289 (47%), Gaps = 63/289 (21%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++KG+++ +L+ + + S+DLI+ DPP+  Q   +L   + +++ +  D+W   +S E Y 
Sbjct: 3   VLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSN-NKNIMYSFEDTW---TSIEDYK 58

Query: 83  AFTRAWLLACRRVLKPNGTLWV----IGSYH------NIFRIGTMLQNLNFWILNDIVWR 132
            F    L  C+RVLK +G+++V    I ++H      NIF    M Q+       +I+W 
Sbjct: 59  EFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFG-ADMFQS-------EIIWN 110

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---VQMRSD------ 183
                 + +G    N H+ + + S S   K  T   +     N D   V+ + D      
Sbjct: 111 YKRWSNSKKG--LLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTI 168

Query: 184 -----------------------WLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVS 219
                                  W IP       L  K  E++ +PTQKP  LL +I+  
Sbjct: 169 YKVDNNGNYILAKEKNGVPLSDVWNIPF------LNPKAKERVGYPTQKPILLLEQIIKI 222

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +T   DI+LDPF GSGT+   +K L R+++GI++ ++ I+I  +R+ +V
Sbjct: 223 ATDKNDIVLDPFCGSGTTLVASKILNRNYMGIDLSEEAINITQQRLENV 271


>gi|148997514|ref|ZP_01825119.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP11-BS70]
 gi|168489597|ref|ZP_02713796.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           SP195]
 gi|168575894|ref|ZP_02721809.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           MLV-016]
 gi|307068084|ref|YP_003877050.1| adenine specific DNa methylase Mod [Streptococcus pneumoniae AP200]
 gi|147756569|gb|EDK63610.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP11-BS70]
 gi|183571882|gb|EDT92410.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           SP195]
 gi|183578247|gb|EDT98775.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           MLV-016]
 gi|301794465|emb|CBW36902.1| putative DNA modification methylase [Streptococcus pneumoniae
           INV104]
 gi|306409621|gb|ADM85048.1| Adenine specific DNA methylase Mod [Streptococcus pneumoniae AP200]
 gi|332073737|gb|EGI84216.1| DNA methylase family protein [Streptococcus pneumoniae GA17570]
 gi|332203261|gb|EGJ17329.1| DNA methylase family protein [Streptococcus pneumoniae GA47901]
          Length = 396

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 137/290 (47%), Gaps = 65/290 (22%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++KG+++ +L+ + + S+DLI+ DPP+  Q   +L   + +++ +  D+W   +S E Y 
Sbjct: 3   VLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSN-NKNIMYSFEDTW---TSIEDYK 58

Query: 83  AFTRAWLLACRRVLKPNGTLWV----IGSYH------NIFRIGTMLQNLNFWILNDIVWR 132
            F    L  C+RVLK +G+++V    I ++H      NIF    M Q+       +I+W 
Sbjct: 59  EFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFG-ADMFQS-------EIIWN 110

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF-------------------------- 166
                 + +G    N H+ + + S S   K  T                           
Sbjct: 111 YKRWSNSKKG--LLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRNGNSKTI 168

Query: 167 -------NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILV 218
                  NY   K  N  V +   W IP       L  K  E++ +PTQKP  LL +I+ 
Sbjct: 169 YKVDNNGNYILAKEKN-GVPLSDVWNIPF------LNPKAKERVGYPTQKPILLLEQIIK 221

Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            +T   DI+LDPF GSGT+   +K L R+++GI++ ++ I+I  +R+ +V
Sbjct: 222 IATDKNDIVLDPFCGSGTTLVASKILNRNYMGIDLSEEAINITQQRLENV 271


>gi|297519344|ref|ZP_06937730.1| putative methyltransferase [Escherichia coli OP50]
          Length = 234

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/213 (32%), Positives = 105/213 (49%), Gaps = 23/213 (10%)

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
           C RVLK  G+++++ S  N+  I    + L F I + IVW   +     + + + + +E 
Sbjct: 12  CHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQAK-KHYGSMYEP 69

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK------------- 198
           ++       AK YTFN DA+    +    R+  LI       +  N              
Sbjct: 70  ILMMVKD--AKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNHQKVPGNVWDFPRV 125

Query: 199 ----DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
               D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R FIGIE+ 
Sbjct: 126 RYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGRKFIGIEIN 185

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
            +YI +  +R+         EL  +  ++T  R
Sbjct: 186 SEYIKMGLRRLDVASHYSAEELAKVKKRKTGNR 218


>gi|168493334|ref|ZP_02717477.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           CDC3059-06]
 gi|183576799|gb|EDT97327.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           CDC3059-06]
          Length = 392

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 138/289 (47%), Gaps = 63/289 (21%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++KG+++ +L+ + + S+DLI+ DPP+  Q   +L   + +++ +  D+W   +S E Y 
Sbjct: 3   VLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSN-NKNIMYSFEDTW---TSIEDYK 58

Query: 83  AFTRAWLLACRRVLKPNGTLWV----IGSYH------NIFRIGTMLQNLNFWILNDIVWR 132
            F    L  C+RVLK +G+++V    I ++H      NIF    M Q+       +I+W 
Sbjct: 59  EFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFG-ADMFQS-------EIIWN 110

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---VQMRSD------ 183
                 + +G    N H+ + + S S   K  T   +     N D   V+ + D      
Sbjct: 111 YKRWSNSKKG--LLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTI 168

Query: 184 -----------------------WLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVS 219
                                  W IP       L  K  E++ +PTQKP  LL +I+  
Sbjct: 169 YKVDNNGNYILAKEKNGVPLSDVWNIPF------LNPKAKERVGYPTQKPILLLEQIIKI 222

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +T   DI+LDPF GSGT+   +K L R+++GI++ ++ I+I  +R+ +V
Sbjct: 223 ATDKNDIVLDPFCGSGTTLVASKILNRNYMGIDLSEEAINITQQRLENV 271


>gi|312796824|ref|YP_004029746.1| adenine-specific methyltransferase [Burkholderia rhizoxinica HKI
           454]
 gi|312168599|emb|CBW75602.1| Adenine-specific methyltransferase (EC 2.1.1.72) [Burkholderia
           rhizoxinica HKI 454]
          Length = 313

 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 118/238 (49%), Gaps = 33/238 (13%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           L  +S+DLI ADPPY L   G+ Y  D           DK +  + + A+T  WL     
Sbjct: 67  LADQSIDLILADPPYGL---GKDYGNDS----------DKRNG-QDFIAWTCRWLELAIP 112

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
            LKP+G+L+V  ++     I   L+     ++N+I+W +  P      RRF + H+ + +
Sbjct: 113 KLKPSGSLYVFCTWQYAPEIFCFLKR-RLTMINEIIWDRRVPSMGGTTRRFTSVHDNIGF 171

Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMR---------SDWLIPICSGSE-----RLRNKDG 200
            + S   K Y F+ D ++   + V  +         S WL    +  +     RL  +  
Sbjct: 172 FAVS---KDYYFDLDPVRIPYDPVTKKARSRRIFEGSKWLELGYNPKDVWSVSRLHRQHA 228

Query: 201 EKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           E++ HPTQKP  ++ R+++SS  PG ++LDPF GSGT+     + +R F+G E+  +Y
Sbjct: 229 ERVAHPTQKPLEIIERMVLSSCPPGGLVLDPFMGSGTTAVACARHQRRFVGYEINPEY 286


>gi|320108417|ref|YP_004184007.1| DNA methylase N-4/N-6 domain-containing protein [Terriglobus
           saanensis SP1PR4]
 gi|319926938|gb|ADV84013.1| DNA methylase N-4/N-6 domain protein [Terriglobus saanensis SP1PR4]
          Length = 278

 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 124/284 (43%), Gaps = 57/284 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ--------------------LNGQLYRPD 61
           +++   ++  L+ LP++SVDLI+ DPP+N                        G  YR +
Sbjct: 10  QVVHAENLGFLQTLPSESVDLIYIDPPFNTGRVQKRTRMKTVRDEAGDRTGFGGARYRTE 69

Query: 62  H-SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
             +   A  D++D F        F R  L    R+LKP+G L+             ML  
Sbjct: 70  KLAEAAAYEDTFDDFL------GFIRPRLEEAYRILKPHGALFFHIDPRESHYCKVMLDQ 123

Query: 121 L--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
           +       N+I+W       +   +R+   H+T++W +  P    YTFN  A        
Sbjct: 124 IFTRPCFQNEIIWAYDYGARS--TKRWPGKHDTILWYTKHPTK--YTFNLAACD------ 173

Query: 179 QMRSDWLIPICSGSERL-RNKDGEKL---------------HPTQKPEALLSRILVSSTK 222
             R +++ P   G+E+  R K    +               +PTQKP  +L+RI+   TK
Sbjct: 174 --RIEYMAPTLVGAEKAARGKTPTDVWWHTIVSPTGKEKTGYPTQKPLGVLNRIVKVHTK 231

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           P D +LD F GSGT+G  A K +R FI ++  ++ + I  KR+A
Sbjct: 232 PKDTVLDFFAGSGTTGEAAAKNKRRFILVDQSEEAVGIMQKRLA 275


>gi|194097602|ref|YP_002000638.1| putative modification methylase [Neisseria gonorrhoeae NCCP11945]
 gi|193932892|gb|ACF28716.1| putative modification methylase [Neisseria gonorrhoeae NCCP11945]
          Length = 111

 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 66/112 (58%), Gaps = 1/112 (0%)

Query: 42  LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
           +IFADPPY L  +G     +  +V     +WDK     A   F   WL  C  +LKPNGT
Sbjct: 1   MIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGMAADLEFYEEWLRLCYALLKPNGT 59

Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           +WV G++HNI+ IG ++Q + + ILN+I W K NP PN   R F ++ ET++
Sbjct: 60  IWVCGTFHNIYLIGYLMQTVGYHILNNITWEKPNPPPNLSCRFFTHSTETIL 111


>gi|149019387|ref|ZP_01834749.1| nicotinate phosphoribosyltransferase [Streptococcus pneumoniae
           SP23-BS72]
 gi|147931257|gb|EDK82236.1| nicotinate phosphoribosyltransferase [Streptococcus pneumoniae
           SP23-BS72]
          Length = 332

 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 138/289 (47%), Gaps = 63/289 (21%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++KG+++ +L+ + + S+DLI+ DPP+  Q   +L   + +++ +  D+W   +S E Y 
Sbjct: 3   VLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSN-NKNIMYSFEDTW---TSIEDYK 58

Query: 83  AFTRAWLLACRRVLKPNGTLWV----IGSYH------NIFRIGTMLQNLNFWILNDIVWR 132
            F    L  C+RVLK +G+++V    I ++H      NIF    M Q+       +I+W 
Sbjct: 59  EFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFG-ADMFQS-------EIIWN 110

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---VQMRSD------ 183
                 + +G    N H+ + + S S   K  T   +     N D   V+ + D      
Sbjct: 111 YKRWSNSKKG--LLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTI 168

Query: 184 -----------------------WLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVS 219
                                  W IP       L  K  E++ +PTQKP  LL +I+  
Sbjct: 169 YKVDNNGNYILAKEKNGVPLSDVWNIPF------LNPKAKERVGYPTQKPILLLEQIIKI 222

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +T   DI+LDPF GSGT+   +K L R+++GI++ ++ I+I  +R+ +V
Sbjct: 223 ATDKNDIVLDPFCGSGTTLVASKILNRNYMGIDLSEEAINITQQRLENV 271


>gi|225854874|ref|YP_002736386.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           JJA]
 gi|225723405|gb|ACO19258.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           JJA]
          Length = 405

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 138/289 (47%), Gaps = 63/289 (21%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++KG+++ +L+ + + S+DLI+ DPP+  Q   +L   + +++ +  D+W   +S E Y 
Sbjct: 3   VLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSN-NKNIMYSFEDTW---TSIEDYK 58

Query: 83  AFTRAWLLACRRVLKPNGTLWV----IGSYH------NIFRIGTMLQNLNFWILNDIVWR 132
            F    L  C+RVLK +G+++V    I ++H      NIF    M Q+       +I+W 
Sbjct: 59  EFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFG-ADMFQS-------EIIWN 110

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---VQMRSD------ 183
                 + +G    N H+ + + S S   K  T   +     N D   V+ + D      
Sbjct: 111 YKRWSNSKKG--LLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTI 168

Query: 184 -----------------------WLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVS 219
                                  W IP       L  K  E++ +PTQKP  LL +I+  
Sbjct: 169 YKVDNNGNYILAKEKNGVPLSDVWNIPF------LNPKAKERVGYPTQKPILLLEQIIKI 222

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +T   DI+LDPF GSGT+   +K L R+++GI++ ++ I+I  +R+ +V
Sbjct: 223 ATDKNDIVLDPFCGSGTTLVASKILNRNYMGIDLSEEAINITQQRLENV 271


>gi|168491335|ref|ZP_02715478.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           CDC0288-04]
 gi|183574390|gb|EDT94918.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           CDC0288-04]
          Length = 392

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 138/289 (47%), Gaps = 63/289 (21%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++KG+++ +L+ + + S+DLI+ DPP+  Q   +L   + +++ +  D+W   +S E Y 
Sbjct: 3   VLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSN-NKNIMYSFEDTW---TSIEDYK 58

Query: 83  AFTRAWLLACRRVLKPNGTLWV----IGSYH------NIFRIGTMLQNLNFWILNDIVWR 132
            F    L  C+RVLK +G+++V    I ++H      NIF    M Q+       +I+W 
Sbjct: 59  EFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFG-ADMFQS-------EIIWN 110

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---VQMRSD------ 183
                 + +G    N H+ + + S S   K  T   +     N D   V+ + D      
Sbjct: 111 YKRWSNSKKG--LLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTI 168

Query: 184 -----------------------WLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVS 219
                                  W IP       L  K  E++ +PTQKP  LL +I+  
Sbjct: 169 YKVDNNGNYILAKEKNGVPLSDVWNIPF------LNPKAKERVGYPTQKPILLLEQIIKI 222

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +T   D++LDPF GSGT+   +K L R+++GI++ ++ I+I  +R+ +V
Sbjct: 223 ATDKNDVVLDPFCGSGTTLVASKILNRNYMGIDLSEEAINITQQRLENV 271


>gi|110636168|ref|YP_676376.1| DNA methylase N-4/N-6 [Mesorhizobium sp. BNC1]
 gi|110287152|gb|ABG65211.1| DNA methylase N-4/N-6 [Chelativorans sp. BNC1]
          Length = 276

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 111/262 (42%), Gaps = 57/262 (21%)

Query: 35  LPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
           +PA    D+I ADPPY           D SL       WD+  S          WL   R
Sbjct: 32  MPAHGPFDMILADPPYG----------DTSL------GWDRRVS---------GWLPLAR 66

Query: 94  RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
             L+ +G+LWV GS  +      +  +  F +  +IVW K N   +F   RF+  HE ++
Sbjct: 67  AALRHSGSLWVFGSLRSFMATADLFADAGFRLAQEIVWEKQNGT-SFHSDRFKRVHEIVV 125

Query: 154 WASP--------------SPKAKG----------YTFNYDALKAANEDVQMRSDWLIPIC 189
              P              +P A            +T + DA    + D   R      I 
Sbjct: 126 QFYPAETPWRDIYNDVQTTPDATARTVRRKQRPPHTGHIDAGHYVSHDGGPR------IM 179

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
                +RN  G  +HPT+KP ALL  ++ +S  PG ++ D F GSG++G   +   R+++
Sbjct: 180 RSVIYVRNTHGRAIHPTEKPSALLEILIRTSCPPGGLVGDWFAGSGSAGEACRLTGRNYL 239

Query: 250 GIEMKQDYIDIATKRIASVQPL 271
           G E+     + A  RIASV PL
Sbjct: 240 GCEIDGAMAERARTRIASVLPL 261


>gi|332073769|gb|EGI84247.1| DNA methylase family protein [Streptococcus pneumoniae GA41301]
          Length = 325

 Score = 96.3 bits (238), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 136/289 (47%), Gaps = 63/289 (21%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++KG+++ +L+ + + S+DLI+ DPP+  Q   +L   + +++ +  D+W   +S E Y 
Sbjct: 3   VLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKL-SNNKNIMYSFEDTW---TSIEDYK 58

Query: 83  AFTRAWLLACRRVLKPNGTLWV----IGSYH------NIFRIGTMLQNLNFWILNDIVWR 132
            F    L  C+RVLK +G+++V    I ++H      NIF    M Q+       +I+W 
Sbjct: 59  EFLSIRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFG-ADMFQS-------EIIWN 110

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED--------------- 177
                 + +G    N H+ + + S S   K  T   +     N D               
Sbjct: 111 YKRWSNSKKG--LLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRNGNSKTI 168

Query: 178 -----------------VQMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVS 219
                            V +   W IP       L  K  E++ +PTQKP  LL +I+  
Sbjct: 169 YKVDNNGDYILAKEKNGVPLSDVWNIPF------LNPKAKERVGYPTQKPILLLEQIIKI 222

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +T   DI+LDPF GSGT+   +K L R+++GI++ ++ I+I  +R+ +V
Sbjct: 223 ATDKNDIVLDPFCGSGTTLVASKILNRNYMGIDLSEEAINITQQRLENV 271


>gi|189036164|gb|ACD75432.1| AMDV4_3 [uncultured virus]
          Length = 243

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 119/247 (48%), Gaps = 35/247 (14%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK-FSSFEAYDA 83
           +G+ + ++++L  +SVD +  DPPY +            +V+      DK F+ F     
Sbjct: 6   QGDCLELMKELKDESVDCVITDPPYGIDFLSHWTNNHKKIVNDSDIRIDKLFAQF----- 60

Query: 84  FTRAWLLACRRVLKPNGTLWVI---GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                L   +R+LKP+G + +    G       + T+  + +  ++  ++W K     +F
Sbjct: 61  -----LPEFKRILKPHGVVCIFSAGGGKKITTALATLELSKHMHLIQTLIWSKGKTDGSF 115

Query: 141 RGR--RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
            G   +++ ++ET++  S          NY      + +V +   + IP          +
Sbjct: 116 VGLGWKYRPSYETILIGSKDLN------NYAFYPQYSSNVLVYKPY-IP----------Q 158

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            GE  HPTQKP  L+  +L + TK GD +LDPF GSGT+G   K+L+R+FIG E+  DY 
Sbjct: 159 KGE--HPTQKPIDLMCNLLRNHTKVGDTVLDPFMGSGTTGVACKQLKRNFIGYELDSDYF 216

Query: 259 DIATKRI 265
            +A KRI
Sbjct: 217 RMAEKRI 223


>gi|163753955|ref|ZP_02161078.1| DNA methylase N-4/N-6 domain protein [Kordia algicida OT-1]
 gi|161326169|gb|EDP97495.1| DNA methylase N-4/N-6 domain protein [Kordia algicida OT-1]
          Length = 596

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 101/398 (25%), Positives = 178/398 (44%), Gaps = 78/398 (19%)

Query: 19  WKDKIIKGNSISVLEKLPAK---SVDLIFADPPYN--------LQLNGQLYRPDHSLVDA 67
           W +KI  G+++ V+  L  +    VDLI+ DPP++        ++L G+    + +  + 
Sbjct: 60  WMNKIFWGDNLQVMSHLLKEYRGKVDLIYIDPPFDSKADYKRKIELKGKKIENNRTSFEE 119

Query: 68  --VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL---- 121
              TD W    + ++Y  F    ++  + +L   GT++V   Y  I  +  ++  +    
Sbjct: 120 KQYTDIW----TNDSYLQFIYERVILLKELLSDKGTIYVHADYRKIHYLQLIMDEIFGAS 175

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA-------- 173
           NF   N+I+W  +    +  G  F   H+ ++  S   K   Y F  D+++         
Sbjct: 176 NF--RNEIIWCYTGA--SNVGSDFPKKHDNILRYS---KTGNYVFFKDSIRIPYAEGSLD 228

Query: 174 -AN-----------EDVQMRSDWLIP--ICSGSERLRNKDGEKL-HPTQKPEALLSRILV 218
            AN           E +++ ++  +P       +R     GEK  +PTQK + LL RIL 
Sbjct: 229 RANRNVIGTGGMNFESIELNANGKVPEDFWVDIQRAARYPGEKTGYPTQKSKKLLERILK 288

Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR-------IASVQPL 271
           +S+KPGDI+ D F GSGT+ AVA +L R FIG ++    I+  TKR       I S  P 
Sbjct: 289 ASSKPGDIVFDCFMGSGTTQAVAMELGRKFIGADINLGAIETTTKRLNISREKITSKVP- 347

Query: 272 GNIELTVLTGKRTEPRVAF---------NLLVERGLIQPGQILTNAQGNISATVCADGTL 322
            +++ T   G+  + +  +         N  V R  +Q  +IL  A   +      + T+
Sbjct: 348 -DVDFTNEDGETEKIKDFYTGFSVYNVNNYDVFRNPVQAKEILKQA---LEIQPLPNNTI 403

Query: 323 ISGTELGS------IHRVGAKVSGSETCNGWNFWYFEK 354
             G + G       ++R+  +   +E  +G+N+  F+K
Sbjct: 404 YDGEKDGRMVKIMPVNRIATRADLNELISGFNYKSFQK 441


>gi|320160760|ref|YP_004173984.1| methyltransferase [Anaerolinea thermophila UNI-1]
 gi|319994613|dbj|BAJ63384.1| methyltransferase [Anaerolinea thermophila UNI-1]
          Length = 295

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 128/288 (44%), Gaps = 54/288 (18%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF--- 75
           W  ++  G+++S+L +LP++SV LI+ DPP+N     +  R    +V + T +   F   
Sbjct: 3   WIRRVYFGDNLSILRRLPSESVHLIYIDPPFN--TGKEQSRTRLRVVQSDTGNRRGFGGR 60

Query: 76  -------------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL- 121
                          F+ Y+AF    L    R+L PNG+L+    Y  +      L  + 
Sbjct: 61  TYESIPIDEKAYPDDFDDYEAFLVPRLEEAYRILTPNGSLYFHIDYREVHYCKIWLDRIF 120

Query: 122 -NFWILNDIVWRKSNPMPNFRGR---RFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
                LN+I+W       ++ G+   R+   H+ +++    P    YTFN DA+      
Sbjct: 121 GRDCFLNEIIWAY-----DYGGKPKNRWPAKHDNILFYVKDPNH--YTFNVDAID----- 168

Query: 178 VQMRSDWLIPICSGSERL----------------RNKDGEKLHPTQKPEALLSRILVSST 221
              R  ++ P   G E+                  N   +  +PTQKP  ++ RI+ +S+
Sbjct: 169 ---REPYMAPGLVGPEKAARGKLPTDVWWHTIVGTNSKEKTGYPTQKPVGVIDRIIKASS 225

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
             GD+++D F GSGT G    KL R FI I+   + I +  +R A V+
Sbjct: 226 NAGDVVMDFFAGSGTVGESCLKLNRQFILIDNHPEAIHVMRQRFAGVE 273


>gi|319935614|ref|ZP_08010048.1| hypothetical protein HMPREF9488_00879 [Coprobacillus sp. 29_1]
 gi|319809491|gb|EFW05912.1| hypothetical protein HMPREF9488_00879 [Coprobacillus sp. 29_1]
          Length = 232

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 122/254 (48%), Gaps = 41/254 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQL----NGQLYRPDHSLVDAVTDS-WDKFSS 77
           II G++  V++K+ +KS+DLI  DPPY +      NG++ +    L + + DS       
Sbjct: 10  IILGDAYEVIKKIDSKSIDLIVTDPPYLISKGSSGNGRISKQMLKLTNELQDSDVANGIK 69

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWV----IGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
            +  D F R        + KPN  +W     I  Y + F +G  +   +F IL    W K
Sbjct: 70  LDILDEFMRI-------MKKPNIYIWCNKKQILPYLDYF-VG--IHKCSFEILT---WIK 116

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
           +NP+P   GR + N  E  ++       KG + +             ++ W+ P     +
Sbjct: 117 TNPIPTC-GRNYMNDKEYCLYFR-----KGISLHTTYQTG-------KTYWITPTNVKDK 163

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           +L        HPT KP  ++  ++ +S+ PGD++ D F GSGT+   +K+L R++IGIE 
Sbjct: 164 KLYG------HPTIKPIDIIKTLIQNSSAPGDVVFDCFLGSGTTAVASKELERNYIGIEK 217

Query: 254 KQDYIDIATKRIAS 267
             DY +I  +R+ S
Sbjct: 218 NSDYYEITLQRLLS 231


>gi|86151256|ref|ZP_01069471.1| DNA methylase [Campylobacter jejuni subsp. jejuni 260.94]
 gi|85841603|gb|EAQ58850.1| DNA methylase [Campylobacter jejuni subsp. jejuni 260.94]
          Length = 236

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 99/228 (43%), Gaps = 21/228 (9%)

Query: 41  DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG 100
           D I  DPPYN+      +             WDK      +D  T  W+     ++  NG
Sbjct: 27  DSIITDPPYNISKENNFHTLKSKRQGVDFGEWDK-----EFD--TCEWIEYFAPLVTKNG 79

Query: 101 TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
           ++ +  SY  +  I   L    F   + + W K+NPMP    RR+    E  IWA  +  
Sbjct: 80  SMIIFCSYLYLSFIIKKLGICGFITKDILRWEKTNPMPRNVNRRYVQDCEFAIWAVKN-- 137

Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
              +TFN        E   ++  +   + SG E+         HPTQK   L+  I+   
Sbjct: 138 GAKWTFN-----KPIESKYLKPCFKTSLVSGEEKTS-------HPTQKSLKLMREIIQIH 185

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           T   D+I DPF GSGT G  +  L R FIGIE+ ++Y  IA  RI ++
Sbjct: 186 TNENDLICDPFMGSGTMGVASVNLGRKFIGIELDKEYFQIAKDRIQNL 233


>gi|134298731|ref|YP_001112227.1| DNA methylase N-4/N-6 domain-containing protein [Desulfotomaculum
           reducens MI-1]
 gi|134051431|gb|ABO49402.1| DNA methylase N-4/N-6 domain protein [Desulfotomaculum reducens
           MI-1]
          Length = 299

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 131/289 (45%), Gaps = 63/289 (21%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           II GN++ VL+ +P  ++  +   PPY  L+        D+ + + +       ++ + Y
Sbjct: 20  IIHGNALEVLKLIPDNTIQCVVTSPPYWGLR--------DYGIPNQIGAE----NNLDDY 67

Query: 82  DAFTRAWLLACRRVLKPNGTLWV-IGSYH------------------NI----------- 111
                +     RRVLK +GTLW+ IG  +                  N+           
Sbjct: 68  INNLASIFREVRRVLKKDGTLWLNIGDSYTSGNRKYRAPDKKTDTKTNVRAMNYRPDTPE 127

Query: 112 -----------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
                      +R+   LQ   +++ +DI+W K N MP     R   +HE +   S   K
Sbjct: 128 GLKPKDLIGVPWRVAFALQVDGWFLRSDIIWNKPNCMPESVKDRPTKSHEYIFLLS---K 184

Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
           +K Y ++Y ++K  +E  ++R+   +        +  +  +  H    P  L+   + + 
Sbjct: 185 SKHYYYDYQSIKEPSETGELRNKRTV------WNVNTQGFKDAHFATFPPELIVPCIKAG 238

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           +K  D +LDPFFGSGT G V  +L R +IGIE+ Q+YI++AT+RI + +
Sbjct: 239 SKVNDFVLDPFFGSGTVGVVCNELSRRYIGIEISQEYIEMATQRIINTE 287


>gi|322434539|ref|YP_004216751.1| DNA methylase N-4/N-6 domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321162266|gb|ADW67971.1| DNA methylase N-4/N-6 domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 303

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 129/277 (46%), Gaps = 42/277 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD------- 73
           ++I+ G +++VL+ LPA S DLI+ DPP+N     Q  R   ++ DA  D          
Sbjct: 2   NRIVLGENLAVLKTLPAHSADLIYIDPPFNTG-KTQFRRRMKTVTDAEGDRTGFGGRRFR 60

Query: 74  ----------KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-- 121
                        SF+ Y  F R  ++  RR+L P G+L++      +     ML  +  
Sbjct: 61  TEILDDGLAGYLDSFDDYIGFLRPRMIEARRILTPTGSLFLHVDPREVHYCKVMLDEVFG 120

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA----------L 171
                N+I+W  +        +R+   H+ L+W +  PK   +TF+ +A          L
Sbjct: 121 RPCFQNEIIW--AYDYGARTSKRWPAKHDNLLWYTRDPKR--FTFDLNATDRIPYMAPRL 176

Query: 172 KAANEDVQMRSD---WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
             A +  + ++    W   I S + +   K G   + TQKP  +L RI+   ++PGD +L
Sbjct: 177 VGAAKTARGKTPTDVWWHTIVSPTGK--EKTG---YATQKPVNMLERIVRVHSRPGDRVL 231

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           D F GSGT+G  A++  RSF+ I+   + I +  KR+
Sbjct: 232 DFFAGSGTTGEAAQRNDRSFLLIDQSPEAIKVMEKRL 268


>gi|297566253|ref|YP_003685225.1| DNA methylase N-4/N-6 domain-containing protein [Meiothermus
           silvanus DSM 9946]
 gi|296850702|gb|ADH63717.1| DNA methylase N-4/N-6 domain protein [Meiothermus silvanus DSM
           9946]
          Length = 284

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 128/285 (44%), Gaps = 52/285 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA-------------- 67
           +II   +++ L+ LP  +  LI+ DPP+N     Q  R   +  DA              
Sbjct: 3   RIILAENLAYLQTLPDGAFPLIYIDPPFNTG-RIQSRRRIRAKSDANGTRGGFGGRRYQV 61

Query: 68  -VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFW 124
            + DS     S + + AF    L    RVL  NG+ ++   Y  I     ++  +     
Sbjct: 62  ELLDSPVYADSHQDFLAFLEPRLQEGYRVLSENGSFFLHLDYREIHYAKVLMDQIFGRES 121

Query: 125 ILNDIVWRKSNPMPNFRGR---RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
            +N+I+W       +F GR   R+   H+T++W + +P+   YTF+Y  +         R
Sbjct: 122 FINEIIWAY-----DFGGRPKNRWPAKHDTILWYAKNPRR--YTFHYTEID--------R 166

Query: 182 SDWLIPICSGSERLR----------------NKDGEKLHPTQKPEALLSRILVSSTKPGD 225
             ++ P  +G E+ R                N   +  +PTQKP  LL RI+   + PGD
Sbjct: 167 IPYMAPNLAGREKARRGKVPTDVWWQTIVPTNSKEKTGYPTQKPLKLLERIIRVHSNPGD 226

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
           I+LD F GSGT+G  A +L R F+ ++   + + I  +R+A  +P
Sbjct: 227 IVLDFFAGSGTTGEAAARLGRGFVLVDHHPEAVQIMAQRLAFAKP 271


>gi|218441353|ref|YP_002379682.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
 gi|218174081|gb|ACK72814.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
          Length = 283

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 115/262 (43%), Gaps = 47/262 (17%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           + KLP + +++    PPYN                 +   ++   S + Y A+ + W+  
Sbjct: 29  MAKLPNEIINMTVTSPPYN-----------------IGKEYEDILSLDEYLAWCKRWIQE 71

Query: 92  CRRVLKPNGTLWVIGSYHNIFR------IGTML-QNLNFWILNDIVWRKSNPMPNFRGRR 144
             R+   NG+ W+   Y +I +      I  +L   + F+++ +IVW     +     + 
Sbjct: 72  VYRLTTINGSFWLNLGYISIPKRAKAIPISYLLWDKIPFYLIQEIVWNYGAGVA--AKKF 129

Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD----------------WLIP- 187
           F   +E  +W         Y FN D ++  N     +                  W IP 
Sbjct: 130 FSPRNEKFLWYVKD--ELNYIFNLDDIRDPNVKYPNQKKNGKIKVNPMGKNPTDVWQIPK 187

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           + SG  R   +     HP Q P A++ RI+ +S+  GD+ILDPF GSGT+  VA KL RS
Sbjct: 188 VTSGKNRASKERTP--HPCQYPIAVIDRIIKASSNKGDLILDPFLGSGTTAIVALKLDRS 245

Query: 248 FIGIEMKQDYIDIATKRIASVQ 269
            IG E+  DY ++A KRI + +
Sbjct: 246 VIGFEINSDYCEMAVKRIKTFK 267


>gi|329765700|ref|ZP_08257269.1| DNA methylase N-4/N-6 domain-containing protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329137766|gb|EGG42033.1| DNA methylase N-4/N-6 domain-containing protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 258

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 124/247 (50%), Gaps = 8/247 (3%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA-VTDSWDKFSSFE 79
           +KI   N I  ++ +P   +DLI  DPP+   +N +  + +++ + + V   +++  + +
Sbjct: 7   NKIYNMNCIEGMKLIPKNKIDLIITDPPF--AINFKATKANYNRISSRVMQGYNEIKAVD 64

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YD F+  W+    R+LK +G+++V   ++N+  I   L ++ F  +N I+W+    +  
Sbjct: 65  YYD-FSYHWMKEAFRILKDSGSMYVFSGWNNLKDILRALDDVGFITVNHIIWKYQFGVVT 123

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK- 198
              R+F  +H   ++     K + + F +   +  ++  + RS          E  R   
Sbjct: 124 --KRKFVTSHYHCLYVCKDDKQRKF-FPFSRFEKNSKSDKGRSLHYKDKEDVWEIKREYW 180

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            G++  PT+ P  L+ ++L  S++  DI+LDPF GSG    V+K + R  +G E+  +Y 
Sbjct: 181 TGDEKTPTKLPAELIEKLLHYSSEKKDIVLDPFLGSGQVAVVSKYMNRRHLGFEIVPEYY 240

Query: 259 DIATKRI 265
             A KR+
Sbjct: 241 KFAKKRL 247


>gi|153010509|ref|YP_001371723.1| DNA methylase N-4/N-6 domain-containing protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|151562397|gb|ABS15894.1| DNA methylase N-4/N-6 domain protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 247

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 104/267 (38%), Gaps = 63/267 (23%)

Query: 33  EKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           E++P  +  D+I ADPPY           D SL               A+D     W++ 
Sbjct: 10  EEMPWHAPYDMIIADPPYG----------DTSL---------------AWDRRVEGWVVL 44

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
            R  L+P G+LWV GS  +         +    I  +IVW K N    F   RF+  HE 
Sbjct: 45  ARAALRPTGSLWVFGSLRSFMATADRFTDAGLRIAQEIVWEKQNGT-GFHADRFKRVHEL 103

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER----------------- 194
            +   P+  A    +N         DVQ   D         +R                 
Sbjct: 104 AVQFYPAETAWRDIYN---------DVQTTPDATARTVRRKQRPPHTGQIDAGHYVSHDG 154

Query: 195 ----------LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
                     LRN  G  +HPT+KP ALL  ++ +S   G ++ D F GSG +G   +  
Sbjct: 155 GPRLMRSVIYLRNCHGRAIHPTEKPSALLEILIRTSCPEGGLVGDWFAGSGAAGEACRLS 214

Query: 245 RRSFIGIEMKQDYIDIATKRIASVQPL 271
            R ++G E+  D  + A  RIA+V P 
Sbjct: 215 GRRYLGCEIDPDMAECARARIATVLPF 241


>gi|313143927|ref|ZP_07806120.1| DNA methylase [Helicobacter cinaedi CCUG 18818]
 gi|313128958|gb|EFR46575.1| DNA methylase [Helicobacter cinaedi CCUG 18818]
          Length = 149

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 76/131 (58%), Gaps = 2/131 (1%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           + +G+  ++L ++  +S D+IFADPPY L  +G L      +V      WD+  + +  D
Sbjct: 21  LYQGDCNALLPQM-KESFDVIFADPPYFLSNDG-LSIQSGKIVSVNKGEWDRGENIDEID 78

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   W+   +  LKP G++ + G+YHNIF +G  LQ L+F ILN I W+K+NP PNF  
Sbjct: 79  RFNMEWISNAKIALKPTGSIMISGTYHNIFSLGRALQKLDFKILNIITWQKTNPPPNFSC 138

Query: 143 RRFQNAHETLI 153
           R   ++ E +I
Sbjct: 139 RYLTHSTEQII 149


>gi|167042742|gb|ABZ07462.1| putative DNA methylase [uncultured marine crenarchaeote
           HF4000_ANIW133O4]
          Length = 240

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 112/255 (43%), Gaps = 46/255 (18%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           ++ +P + +DL+  DPP+ +    +    + +    V   +++    E Y  FT AW+  
Sbjct: 1   MKAIPDEKIDLVLTDPPFAINFKAKKANYNRN-ASRVLSGYNEIK-VEDYYNFTNAWMCE 58

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
             RVLK +G+++V   ++N+  I T L +  F  +N I+W+    +     ++F  +H  
Sbjct: 59  VYRVLKKSGSMYVFSGWNNLKDILTALDDNGFTTINHIIWKYQFGVVT--AKKFVTSH-- 114

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH------- 204
                           Y  L    +D +++     P     +  +  DG  LH       
Sbjct: 115 ----------------YHCLFVCKDDKKIK---FFPYSRFKKNAKTSDGRSLHYKDKEDV 155

Query: 205 --------------PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
                         PT+ P  ++ +IL  S++  D++LDPF GSG    ++K L R ++G
Sbjct: 156 WIINREYWTGDDKTPTKLPAEIIKKILQYSSEKMDLVLDPFLGSGQVAVISKMLGRRYLG 215

Query: 251 IEMKQDYIDIATKRI 265
            E+ + Y D A KR+
Sbjct: 216 FEIVKQYYDFANKRL 230


>gi|193069715|ref|ZP_03050666.1| DNA methylase [Escherichia coli E110019]
 gi|192956917|gb|EDV87369.1| DNA methylase [Escherichia coli E110019]
          Length = 261

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 113/259 (43%), Gaps = 34/259 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYN---LQLNGQLYRPDHS--LVDAVTDSWDKFSS 77
           + +GN++ +L  +  +S+D +  DPPY+       G+  +  H+  L       +D F+ 
Sbjct: 26  LCRGNALEILPLIEPESIDALITDPPYSSGATHKAGRTNQGSHAKYLNGENLHRFDGFAG 85

Query: 78  FEAYDA-----FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
            E  DA     +T+ W+    R ++P G   V   +  +  +    Q   F     I W 
Sbjct: 86  -ENMDARSWAYWTQLWMAQAHRAVRPGGYALVFTDWRQLPALTDAFQASGFTWRGIIAWN 144

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K           F++  E ++W S     K  +  +D                 P+ S  
Sbjct: 145 KGRGSRTPHTGYFRHQCEYIVWGSKGHLDKSPSGPFDGCMT------------FPVISS- 191

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
                   +K+HPT KPE L++  LV +   G  +LDPF GSGT+G  A K  R FIGIE
Sbjct: 192 --------KKMHPTGKPEELMAE-LVRTVNSGGTVLDPFMGSGTTGVAALKAGRKFIGIE 242

Query: 253 MKQDYIDIATKRI-ASVQP 270
               Y D+AT+R+  +++P
Sbjct: 243 TSDHYFDVATQRLKTAIEP 261


>gi|260174737|ref|ZP_05761149.1| cell cycle regulated site-specific DNA-methyltransferase protein
           [Bacteroides sp. D2]
 gi|315922997|ref|ZP_07919237.1| modification methylase HinfI [Bacteroides sp. D2]
 gi|313696872|gb|EFS33707.1| modification methylase HinfI [Bacteroides sp. D2]
          Length = 224

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 113/248 (45%), Gaps = 41/248 (16%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL--NGQLYRPDHSLVDAVTDSWDKFSSF 78
           +KI   + +  L+++P  SVD I  DPPY L +  NGQ                  F   
Sbjct: 4   NKIYNEDCLEALKRVPDNSVDCIITDPPYFLGMTHNGQK---------------GSFKDL 48

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK-SNPM 137
                F R   L   RV KP   ++    +   +     L +L     N IVW K S P 
Sbjct: 49  SICKPFYRDLFLEFNRVKKPGACVYFFTDWRG-YAFYYPLFDLYIGASNMIVWNKQSGP- 106

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
               G  +   HE +++       KG +     + A N    +RS       SG++ +  
Sbjct: 107 ----GNHYAFIHELILFHC----GKGVS-----IGATNIIDNIRS-----FASGAKLV-- 146

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
            +GEK+HPTQKP AL+ +++  STKPGD+ILD F GSGT+   A +  R+F+ +E  + Y
Sbjct: 147 -EGEKVHPTQKPVALIRKLIEDSTKPGDLILDTFGGSGTTAVAAIESGRNFVLMEQDEIY 205

Query: 258 IDIATKRI 265
              A KRI
Sbjct: 206 YFTAQKRI 213


>gi|319778768|ref|YP_004129681.1| Modification methylase BamHII [Taylorella equigenitalis MCE9]
 gi|317108792|gb|ADU91538.1| Modification methylase BamHII [Taylorella equigenitalis MCE9]
          Length = 252

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/255 (30%), Positives = 117/255 (45%), Gaps = 28/255 (10%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL---NGQLYRPDHSLVDAVTDSWDKFSS 77
           +KI   + +  L ++  KSV+L+   PPYN+ L   NG        +V+  +  +  FS 
Sbjct: 5   NKIYNESCLDTLSRMEDKSVNLVITSPPYNMNLRIRNGNY--CSRQIVEEFSTKYSGFSD 62

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLW-----VIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
               + + +  L   + +L+ +  ++     V GS   IFRI   +  LN  + + IVW 
Sbjct: 63  NMPIEEYFQFHLSVLKELLRVSDLVFYNVQIVTGSKRAIFRI---MGELNEQLKDIIVWD 119

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD-WLIPICSG 191
           K    P     R  N    LI    S  A    F     K AN +    +D W I     
Sbjct: 120 KGVAQPAM-AERVLNRQSELILVFESENAISRQF-----KNANFERGTLNDIWQI----- 168

Query: 192 SERLRNKDG-EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
             R   KD   K H    PE L+  IL++ +K  DI+ DPF G+GT+G V KK+ R FIG
Sbjct: 169 --RRGAKDKFTKGHSAVFPEELVETILINFSKENDIVYDPFMGTGTTGLVCKKMNRKFIG 226

Query: 251 IEMKQDYIDIATKRI 265
            E+ + Y + AT+RI
Sbjct: 227 SELMKSYAEQATERI 241


>gi|170783555|ref|YP_001740072.1| DNA modification methylase [Arthrobacter sp. Chr15]
 gi|150035063|gb|ABR67059.1| DNA modification methylase [Arthrobacter sp. Chr15]
          Length = 284

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 131/291 (45%), Gaps = 75/291 (25%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSL---VDAVTDSW 72
           +  ++ G++  +L+++P+++V  +   PPY    +    GQ+ R D SL   + ++T  +
Sbjct: 23  RSAVLLGDAAQMLDRVPSQTVRSVVTSPPYWSLRDYNHEGQIGR-DESLPEFIKSLTVIF 81

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV-IG-SYHNIFR----------------- 113
           DK S                 RVL  +GTLWV +G SY +  R                 
Sbjct: 82  DKVS-----------------RVLTDDGTLWVNLGDSYTSGNRGYRAPDKKNANRAMSVR 124

Query: 114 ------------IGT------MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
                       IG        +Q   +++ +DI+W K N  P     R   +HE +   
Sbjct: 125 PKTPEGLKPKDLIGVPWMFAFAMQQAGWYLRSDIIWYKENTQPESVKDRPTRSHEHVFLF 184

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
           S   K + Y ++ DA+K  N   ++R  W I           K     H    PE L+ R
Sbjct: 185 S---KNEKYHYDIDAVKGPN-GRRLRDVWEI---------NTKGYNGAHFAVYPEELVRR 231

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
             +  ++PGD ILDPF GSGT+GAVA KL R FIG E+  DY+ + ++R++
Sbjct: 232 CALIGSEPGDYILDPFLGSGTTGAVAHKLGRKFIGCEINADYLPLISERLS 282


>gi|189500013|ref|YP_001959483.1| DNA binding domain-containing protein, excisionase family
           [Chlorobium phaeobacteroides BS1]
 gi|189495454|gb|ACE04002.1| DNA binding domain protein, excisionase family [Chlorobium
           phaeobacteroides BS1]
          Length = 365

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 124/298 (41%), Gaps = 84/298 (28%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQL-YRPD-----HSLVDAVTDSW 72
           +I G++  V+++LP  +   +   PPY    +  +  Q+   PD     HSLV+  ++  
Sbjct: 93  VINGDTREVIKRLPENTFRCVITSPPYWGVRDYGVADQIGAEPDLNDYIHSLVEVFSE-- 150

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV-IGSYHN--------------------- 110
                               RRVLKP+GT W+ IG+ +                      
Sbjct: 151 -------------------VRRVLKPDGTFWLNIGNTYTSGGRKWRQADAKNKGRAMSYR 191

Query: 111 ---------------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
                           + +    Q   +++ NDI+W K N  P     R   AHE L   
Sbjct: 192 PPTPEGLKKKDLIGVAWMVAMACQQEGWYLRNDIIWHKPNCQPESVRDRLTVAHEYLFMF 251

Query: 156 SPSPKAKGYTFNYDALKAA----NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           S   K++ Y FN DA++ A    N     R+ W I           +   + H    P  
Sbjct: 252 S---KSERYFFNQDAIREAYSNGNGMKNKRTVWSI---------NTEPCPEAHFAVFPRN 299

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           L+   +++ ++ GD +LDPF+G+GT G VA++L R   GIE+   Y+DIA KR + +Q
Sbjct: 300 LVRPCVLAGSEEGDAVLDPFYGAGTVGMVAQELNRKCTGIEINDGYVDIARKRTSKIQ 357


>gi|331658494|ref|ZP_08359438.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA206]
 gi|331054159|gb|EGI26186.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA206]
          Length = 263

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 112/259 (43%), Gaps = 34/259 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYN---LQLNGQLYRPDHS--LVDAVTDSWDKFSS 77
           + +GN++ +L  +  +S+D +  DPPY+       G+  +  H+  L       +D F+ 
Sbjct: 28  LCRGNALEILPLIEPESIDALITDPPYSSGATHKAGRTNQGSHAKYLNGGNLHRFDGFAG 87

Query: 78  FEAYDA-----FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
            E  DA     +T+ W+    R ++P G   V   +  +  +    Q   F     IVW 
Sbjct: 88  -ENMDARSWAYWTQLWMAQAHRAVRPGGYALVFTDWRQLPALTDAFQASGFTWRGIIVWN 146

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K           F++  E ++W S     K  +  +D                 P+    
Sbjct: 147 KGRGSRTPHTGYFRHQCEYIVWGSKGHLDKSPSGPFDGCMT------------FPVIPSK 194

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           +R         HPT KPE L++  LV +   G  +LDPF GSGT+G  A K  R FIGIE
Sbjct: 195 KR---------HPTGKPEELMAE-LVRTANSGGTVLDPFMGSGTTGVAALKAGRKFIGIE 244

Query: 253 MKQDYIDIATKRI-ASVQP 270
               Y D+AT+R+  +++P
Sbjct: 245 TSDHYFDVATQRLKTAIEP 263


>gi|28916734|gb|AAD39134.2|AF123569_2 NmeSIM [Neisseria meningitidis]
 gi|325129400|gb|EGC52233.1| adenine-specific methyltransferase HpaI [Neisseria meningitidis
           OX99.30304]
 gi|325135457|gb|EGC58076.1| DNA methylase [Neisseria meningitidis M0579]
 gi|325207331|gb|ADZ02783.1| DNA methylase [Neisseria meningitidis NZ-05/33]
          Length = 283

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 121/266 (45%), Gaps = 45/266 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I +G+ I +++K+   S  +    PPYN+   G+ Y    S++D            E Y 
Sbjct: 32  IYQGDCIQLMDKISKGSFQMTITSPPYNI---GKEY---ESILD-----------LEHYL 74

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML-------QNLNFWILNDIVWRKSN 135
            +   W+ +   + + +G  W+   Y ++ + G  +          NF++L ++VW  + 
Sbjct: 75  EWCERWMQSIHHLTEDSGCFWLNLGYLHVEKKGLAVPIPYLLWDKTNFFLLQEVVWNYAA 134

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN-------EDVQMRSD----- 183
            +      RF   +E L+W   +P    YTFN DA++  N       ++ +++ +     
Sbjct: 135 GVAC--RNRFSPRNEKLLWYVKNPAK--YTFNLDAVRDPNVKYPNQKKNGKLKCNPLGKN 190

Query: 184 ----WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
               W I   + S R R+      HP Q P  L+ RI+ +S+   D+ILDPF GSGT+  
Sbjct: 191 PTDVWQIAKVT-SGRNRSSRERTAHPAQFPLELIERIIRASSNQNDVILDPFIGSGTTAL 249

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRI 265
              K  R  IG E+  +YIDI  +R 
Sbjct: 250 AGLKNNRFVIGFEINDEYIDIIKERF 275


>gi|1171042|sp|P23941|MTB1_BACAM RecName: Full=Modification methylase BamHI; Short=M.BamHI; AltName:
           Full=N(4)- cytosine-specific methyltransferase BamHI
          Length = 423

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 131/280 (46%), Gaps = 51/280 (18%)

Query: 1   MSQKNSLAINENQNSIFEWK-------DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
           +  KNS+ +NE  NSI E K        K+  G+ + + +++P ++VD IFADPP+NL  
Sbjct: 93  LENKNSVKLNE-FNSIQEIKPYFYTDLGKLYNGDCLELFKQVPDENVDTIFADPPFNL-- 149

Query: 54  NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
                  D    + VTD     +SF  Y  +   W+  C RVLKP G+L++    +NI +
Sbjct: 150 -------DKEYDEGVTDK----NSFSGYMDWYYKWIDECIRVLKPGGSLFI----YNIPK 194

Query: 114 IGTML-----QNLNF--WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
             T L     + +NF  WI  D+ +    P+ N    R   A+ +L++     K K +  
Sbjct: 195 WNTYLSEYLNRKMNFRNWITVDMKF--GLPIQN----RLYPANYSLLYYVKGDKPKTFNV 248

Query: 167 NYDALKAANEDVQMRSDW-------------LIPICSGSERLRNKDGEKLHPTQKPEALL 213
               L+      +   D+             L  + S    +R+   +     +    LL
Sbjct: 249 QRIPLQTCPHCGREIKDYGGYKNKMNPKGVTLSDVWSDIYPVRHSSSKNRKFNELSVKLL 308

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
            RI+  ST  GD++LDPF GSGT+ AV++ L R +IG EM
Sbjct: 309 DRIITMSTNEGDVVLDPFGGSGTTFAVSEMLGRKWIGFEM 348


>gi|291551270|emb|CBL27532.1| DNA modification methylase [Ruminococcus torques L2-14]
          Length = 574

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 142/292 (48%), Gaps = 53/292 (18%)

Query: 19  WKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQ----LYRPDHSLVDAVTDS 71
           W +KI  G+++ V+  L  +    +DLI+ DPP++ + + +    +     +L D  T  
Sbjct: 50  WINKIFWGDNLQVMSHLLKEYRGKIDLIYIDPPFDSKADYKKKIKMKNTGTALSDTSTFE 109

Query: 72  WDKFSSF---EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL----NFW 124
             ++      + Y  F     +  R +L   G+L+V   +H +  +  +L  +    NF 
Sbjct: 110 EKQYGDIWTNDEYLQFMYERFILIRELLSERGSLYVHCDWHKVHHLRMVLDEVFGPSNF- 168

Query: 125 ILNDIVWRKSNPMPNFRGR-RFQNAHETLIWASPSPKAKGYTFNY-DALK---------- 172
             N+++W     +   RG+ ++ + H+ +++ S   K+  +TFNY D L           
Sbjct: 169 -RNEVIWWY---LWGGRGKTQWNSKHDNILFYS---KSDNWTFNYMDVLDEHTLMTEGSK 221

Query: 173 -----------AANEDVQMRSDWLIP-----ICSGSERLRNKDGEKLHPTQKPEALLSRI 216
                        +E+ ++  D ++P     I + +   + K+    +PTQKPE LLS+I
Sbjct: 222 NRLNYAGAMVTTKSENSEIPQDKVLPSDTWYIATINAMAKEKEN---YPTQKPEELLSKI 278

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +++S+ PGDI+ D F GSGT+ AVA KL R FIG ++    I   TKR+ +V
Sbjct: 279 ILASSNPGDIVFDCFMGSGTTQAVAMKLGRRFIGADINLGSIQTTTKRLINV 330


>gi|320177588|gb|EFW52578.1| Putative methyltransferase [Shigella boydii ATCC 9905]
          Length = 261

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 109/252 (43%), Gaps = 31/252 (12%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV--TDSWDKFSSF-- 78
           + +GN++ +L  +  +S+D +  DPPY+     +  R +         ++S  +F  F  
Sbjct: 26  LCRGNALEILPLIEPESIDALITDPPYSSGATHKAGRTNQGSHAKYLNSESLHRFDGFAG 85

Query: 79  EAYDA-----FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           E  DA     +T+ W+    R ++P G   +   +  +  +    Q   F     I W K
Sbjct: 86  ENMDARSWAYWTQLWMAQAHRAVRPGGYALIFTDWRQLPALTDAFQASGFTWRGIIAWNK 145

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
                      F++  E ++W S     K  +  +D               +IP      
Sbjct: 146 GRGSRTPHTGYFRHQCEYIVWGSKGHLDKSPSGPFDGCMTYP---------VIP------ 190

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
                  +K+HPT KPE L++  LV +   G  +LDPF GSGT+G  A K  R FIGIE 
Sbjct: 191 ------SKKMHPTGKPEELMAE-LVRTANSGGTVLDPFMGSGTTGVAALKAGRRFIGIET 243

Query: 254 KQDYIDIATKRI 265
            + Y ++AT+R+
Sbjct: 244 SEHYFEVATQRL 255


>gi|325201351|gb|ADY96805.1| adenine-specific methyltransferase HpaI [Neisseria meningitidis
           M01-240149]
          Length = 289

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 121/266 (45%), Gaps = 45/266 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I +G+ I +++K+   S  +    PPYN+   G+ Y    S++D            E Y 
Sbjct: 38  IYQGDCIQLMDKISKGSFQMTITSPPYNI---GKEY---ESILD-----------LEHYL 80

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML-------QNLNFWILNDIVWRKSN 135
            +   W+ +   + + +G  W+   Y ++ + G  +          NF++L ++VW  + 
Sbjct: 81  EWCERWMQSIHHLTEDSGCFWLNLGYLHVEKKGLAVPIPYLLWDKTNFFLLQEVVWNYAA 140

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN-------EDVQMRSD----- 183
            +      RF   +E L+W   +P    YTFN DA++  N       ++ +++ +     
Sbjct: 141 GVAC--RNRFSPRNEKLLWYVKNPAK--YTFNLDAVRDPNVKYPNQKKNGKLKCNPLGKN 196

Query: 184 ----WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
               W I   + S R R+      HP Q P  L+ RI+ +S+   D+ILDPF GSGT+  
Sbjct: 197 PTDVWQIAKVT-SGRNRSSRERTAHPAQFPLELIERIIRASSNQNDVILDPFIGSGTTAL 255

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRI 265
              K  R  IG E+  +YIDI  +R 
Sbjct: 256 AGLKNNRFVIGFEINDEYIDIIKERF 281


>gi|150009836|ref|YP_001304579.1| putative DNA-methyltransferase [Parabacteroides distasonis ATCC
           8503]
 gi|149938260|gb|ABR44957.1| putative DNA-methyltransferase [Parabacteroides distasonis ATCC
           8503]
          Length = 315

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 131/290 (45%), Gaps = 61/290 (21%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           +++  L+ +P  SV L+  DPPYNL+L                D WD   SF  Y  + +
Sbjct: 44  DAVKFLKTVPDSSVQLVLIDPPYNLEL----------------DYWD---SFPNYLDWAK 84

Query: 87  AWLLACRRVLKPNGTLWVIGSYH-NIFRIGTMLQ-------NLNFWILNDIVWRKSNPMP 138
            W+    R++  NG   + G +     + G +L+       N N  ++N I+W   N M 
Sbjct: 85  QWIDEIYRIMSDNGNCVIFGGFQFQDLKQGDLLEILYYIRHNTNLRLINLIIWYYKNGMS 144

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL---------KAANEDVQMRSDWLIPIC 189
               R F N HE  IW S   K K Y F+ D++         KAA +D ++R +    I 
Sbjct: 145 --AHRYFANRHEEAIWLS---KTKKYYFDLDSVRVPYSEEAKKAALKDKRLRPE---NIE 196

Query: 190 SGSE--------RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
            G          RL     E++ HPTQKP  ++ R++ + +  G ++LD F GSGT+G V
Sbjct: 197 KGKNPTNVWEIGRLNGNSTERVGHPTQKPTEIIRRLVKALSYEGSLVLDFFAGSGTTGRV 256

Query: 241 AKKLRRSFIGIEMK---QDYIDIATKRIA--SVQPL---GNIELTVLTGK 282
             +  R  I ++     + Y ++  K+++  S +P     NIE+     K
Sbjct: 257 CIEENRHSIMVDSDNSLKRYFEMHRKKMSGTSFKPYEICENIEIEKFLEK 306


>gi|237721554|ref|ZP_04552035.1| adenine methyltransferase [Bacteroides sp. 2_2_4]
 gi|229449350|gb|EEO55141.1| adenine methyltransferase [Bacteroides sp. 2_2_4]
          Length = 224

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 113/248 (45%), Gaps = 41/248 (16%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL--NGQLYRPDHSLVDAVTDSWDKFSSF 78
           ++I   + +  L+++P  SVD I  DPPY L +  NGQ                  F   
Sbjct: 4   NQIYNEDCLEALKRVPDNSVDCIITDPPYFLGMTHNGQK---------------GSFKDL 48

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK-SNPM 137
                F R   L   RV KP   ++    +   +     L +L     N IVW K S P 
Sbjct: 49  SICKPFYRDLFLEFNRVKKPGACVYFFTDWRG-YAFYYPLFDLYLGASNMIVWNKQSGP- 106

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
               G  +   HE +++       KG +     + A N    +RS       SG++ +  
Sbjct: 107 ----GNHYAFIHELILFHC----GKGVS-----IGATNIIDNIRS-----FASGAKLV-- 146

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
            +GEK+HPTQKP AL+ +++  STKPGD+ILD F GSGT+   A +  R+F+ +E  + Y
Sbjct: 147 -EGEKIHPTQKPVALIRKLIEDSTKPGDLILDTFGGSGTTAVAAIESGRNFVLMEQDEIY 205

Query: 258 IDIATKRI 265
              A KRI
Sbjct: 206 YFTAQKRI 213


>gi|83748867|ref|ZP_00945878.1| adenine DNA methyltransferase-like protein [Ralstonia solanacearum
           UW551]
 gi|207743921|ref|YP_002260313.1| n-6 adenine-specific dna methylase; protein [Ralstonia solanacearum
           IPO1609]
 gi|83724433|gb|EAP71600.1| adenine DNA methyltransferase-like protein [Ralstonia solanacearum
           UW551]
 gi|206595323|emb|CAQ62250.1| probable n-6 adenine-specific dna methylase; protein [Ralstonia
           solanacearum IPO1609]
          Length = 293

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 119/245 (48%), Gaps = 27/245 (11%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV----TDSWDKFSSFEAYDAFTRA 87
           L  +P+  VDL+  DPPY +    +L +    +V       +D  D +++ + Y  + + 
Sbjct: 24  LAAVPSNFVDLVLTDPPYGIADGAKLTKKGSKIVTTQQAWGSDFKDSWATIDQYYQWLKP 83

Query: 88  WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ---NLNFWILNDIVWRKSNPMPNFRGRR 144
           ++    RV+K NG++ +         I   L+   +LNF   N + ++K NP+P+ R   
Sbjct: 84  FIAEFVRVMKDNGSMILFLDRKYTGLIAHYLERDFDLNF--KNKVYFKKKNPVPSIRKNN 141

Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
           +++  E  +W +   K K YTFN+ A         M   +  PI  G ++ +       H
Sbjct: 142 YRSTIEEAVWFT---KGKEYTFNFGA------QSDMLQVYEGPI--GKKKTQ-------H 183

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PT+K   ++  ++ + +KPGD++LD F GS T+  VAK+  R  IG E      ++A  R
Sbjct: 184 PTEKYTWMVEPLIRNHSKPGDVVLDAFAGSATTLVVAKQQDRHAIGFEKSTALYEMAKAR 243

Query: 265 IASVQ 269
           I + Q
Sbjct: 244 IEAEQ 248


>gi|320537687|ref|ZP_08037615.1| DNA (cytosine-5-)-methyltransferase [Treponema phagedenis F0421]
 gi|320145465|gb|EFW37153.1| DNA (cytosine-5-)-methyltransferase [Treponema phagedenis F0421]
          Length = 228

 Score = 92.8 bits (229), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 112/247 (45%), Gaps = 37/247 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +++ G+ +  L K+P +S+  I  DPPY L +        H+           F+     
Sbjct: 8   ELLHGDCLDFLPKIPDESIQSIITDPPYFLGMT-------HNSQKGC------FNDLAIC 54

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN-PMPNF 140
             F        +R+LKP+G ++    + +      +L ++   + N +VW+K   P  N 
Sbjct: 55  KPFYEKLFKEYKRILKPDGCIYFFCDWRSYAFYYPLLDSV-MQVKNLLVWKKHGRPSLNV 113

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G    + HE ++++    K+                    ++ +  + S +   R  +G
Sbjct: 114 YG----SGHELIMFSGKIKKS------------------YITNIIDDVASFNIGARKTNG 151

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           EK+HPTQKP  L+ + +  ST  GD++LD F GSGT+G       R FIG+E+  +Y +I
Sbjct: 152 EKIHPTQKPIELMEKFIFDSTDEGDVVLDSFMGSGTTGIACLNTNRRFIGMEIDDNYFNI 211

Query: 261 ATKRIAS 267
           A  R+ +
Sbjct: 212 AKNRLET 218


>gi|218962157|ref|YP_001741932.1| Similar to DNA modification methylase [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730814|emb|CAO81726.1| Similar to DNA modification methylase [Candidatus Cloacamonas
           acidaminovorans]
          Length = 375

 Score = 92.8 bits (229), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 128/275 (46%), Gaps = 57/275 (20%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K  +I  +++  ++ LP KS+DL+  DPPYN+          +   + VT  ++K  + +
Sbjct: 79  KGNVICQDALECIQFLPEKSIDLLIIDPPYNM----------YKKFNEVT--FNK-KTID 125

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y  +  +W       +   G+++V   + +   I T+L+  +  + N I W +      
Sbjct: 126 EYAEWIDSWFSQIVSKISLTGSVYVCCDWQSSSAIETVLRK-HLIVRNRITWERDKG--- 181

Query: 140 FRGRR--FQNAHETLIWASPSPKAKGYTFNYDALKAANEDV------------------- 178
            RG +  ++N  E + +A+ S K   Y FN D +K   + +                   
Sbjct: 182 -RGAKTNWKNCSEDIWFATKSNK---YVFNVDKVKIMRKVIAPYRDENGDPKDWKETNTG 237

Query: 179 --------QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
                      +D  IP  S  E   N D    HPTQKPE LL++++++S+  GD + DP
Sbjct: 238 NYRLSHPSNFWTDITIPFWSMPE---NTD----HPTQKPEKLLAKLILASSNEGDFVFDP 290

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           F GSG++  VAKKL R F GIE+ + Y  +  KR+
Sbjct: 291 FCGSGSTLVVAKKLNREFSGIEIDEYYCALTLKRL 325


>gi|315656957|ref|ZP_07909842.1| adenine specific DNA methylase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315492349|gb|EFU81955.1| adenine specific DNA methylase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 291

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 126/285 (44%), Gaps = 59/285 (20%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYN-----------------------LQLNGQLYR 59
           ++ G+++ VLE+LP +S  LI+ DPP+N                       +   GQ Y 
Sbjct: 14  VVAGDNLPVLEQLPDESFQLIYIDPPFNTGKVQSRQSLKTVRSDAPVAGSRVGFQGQTYE 73

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
                V A  DS      F  Y  F    L    R+L P GTL++   Y  +     +L 
Sbjct: 74  TVRGKVTAYNDS------FSDYWGFLEPRLEQAWRLLAPTGTLYLHLDYREVHYAKVLLD 127

Query: 120 NL--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
            L      LN+I+W  +        R++   H+ ++      K   Y F+ D++      
Sbjct: 128 ALFGRDCFLNEIIW--AYDYGGRSKRKWPAKHDNILVYVKDQKQ--YYFDSDSVD----- 178

Query: 178 VQMRSDWLIP-ICSGSERLRNK--------------DGEKL-HPTQKPEALLSRILVSST 221
              R  +++P + +  +  R K                EK  + TQKPE +L RI+ +S+
Sbjct: 179 ---REPYMVPGLVTPEKAARGKLPTDVWWHTIVSPTGKEKTGYATQKPEGILRRIVQASS 235

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           +PGD +LD F GSGT+GAVA  L R F+ I+   + I+I  +R++
Sbjct: 236 RPGDWVLDFFAGSGTTGAVAGTLERRFVLIDENPEAIEIMRRRLS 280


>gi|159896851|ref|YP_001543098.1| site-specific DNA-methyltransferase [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159889890|gb|ABX02970.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 282

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 129/266 (48%), Gaps = 34/266 (12%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +++I+G  + V+  +  +S++L++ DPP+     G+++       D   D W        
Sbjct: 7   NQLIQGEMLDVIGSIAPQSINLLYLDPPFA---AGRVFADSAGAFD---DRWQ--GGLTE 58

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML-QNLNFWIL-NDIVWRKSNPMP 138
           Y A+    L+A RR++  +G+L++      +     +L Q   F    N+I+W  +    
Sbjct: 59  YLAWLEQRLVAARRIVAEHGSLFLHLDRRAVHYAKVLLDQTWGFECFRNEIIWHYTG--- 115

Query: 139 NFRGRR-FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
             R RR F + H+T++W S  P+   +TFN  A++   +     +   I   +G   L +
Sbjct: 116 GGRARRSFSHKHDTILWYSKHPQH--WTFNLQAMRQPYKASSGFAKAGIRSAAGKRYLPH 173

Query: 198 KDG-----------------EKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
            DG                 E+L +PTQKPE LL RI+++++  GD++ D   GSGT+ A
Sbjct: 174 PDGTPVDDVWDIPMLNPMAAERLGYPTQKPERLLERIILAASNSGDLVADLCCGSGTTAA 233

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRI 265
           VA++L R +I  +   D + +   R+
Sbjct: 234 VAQRLGRCWIAADQSADALALVRGRL 259


>gi|308175023|ref|YP_003921728.1| Modification methylase BamHI; M.BamHI; N [Bacillus
           amyloliquefaciens DSM 7]
 gi|307607887|emb|CBI44258.1| Modification methylase BamHI; M.BamHI; N [Bacillus
           amyloliquefaciens DSM 7]
 gi|315000321|emb|CAA38998.2| BamH I methylase [Bacillus amyloliquefaciens]
 gi|328554992|gb|AEB25484.1| Modification methylase BamHI; M.BamHI; N [Bacillus
           amyloliquefaciens TA208]
 gi|328913347|gb|AEB64943.1| Modification methylase BamHI; M.BamHI; N [Bacillus
           amyloliquefaciens LL3]
          Length = 423

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 131/280 (46%), Gaps = 51/280 (18%)

Query: 1   MSQKNSLAINENQNSIFEWK-------DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
           +  KNS+ +NE  NSI E K        K+  G+ + + +++P ++VD IFADPP+NL  
Sbjct: 93  LENKNSVKLNE-FNSIQEIKPYFYTDLGKLYNGDCLELFKQVPDENVDTIFADPPFNL-- 149

Query: 54  NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
                  D    + VTD     +SF  Y  +   W+  C RVLKP G+L++    +NI +
Sbjct: 150 -------DKEYDEGVTDK----NSFSGYLDWYYKWIDECIRVLKPGGSLFI----YNIPK 194

Query: 114 IGTML-----QNLNF--WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
             T L     + LNF  WI  D+ +    P+ N    R   A+ +L++     K K +  
Sbjct: 195 WNTYLSEYLNRKLNFRNWITVDMKF--GLPIQN----RLYPANYSLLYYVKGDKPKTFNV 248

Query: 167 NYDALKAANEDVQMRSDW-------------LIPICSGSERLRNKDGEKLHPTQKPEALL 213
               L+      +   D+             L  + S    +R+   +     +    LL
Sbjct: 249 QRIPLQTCPHCGREIKDYGGYKNKMNPKGVTLSDVWSDIYPVRHSSSKNRKFNELSVKLL 308

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
            RI+  ST  GD++LDPF GSGT+ AV++ L R +IG E+
Sbjct: 309 DRIITMSTNEGDVVLDPFGGSGTTFAVSEMLGRKWIGFEL 348


>gi|307317588|ref|ZP_07597027.1| DNA methylase N-4/N-6 domain protein [Sinorhizobium meliloti AK83]
 gi|306896746|gb|EFN27493.1| DNA methylase N-4/N-6 domain protein [Sinorhizobium meliloti AK83]
          Length = 286

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 122/280 (43%), Gaps = 57/280 (20%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY----------NLQLNGQLYRPDHSLVDAVTDSW 72
           I +G++++VL++LP +    I   PPY           + L   L +  +SLV    ++ 
Sbjct: 19  IFEGDALTVLQRLPDQHAQCIVTSPPYWGLRDYNIDDQIGLEPTLPQFINSLVSVFREAR 78

Query: 73  -----DKFSSFEAYDAFT---RAWLLACRR------VLKPN-----------GTLWVIGS 107
                D        D FT   R W    ++       ++PN           G  W    
Sbjct: 79  RVLRDDGVLWLNIGDGFTSGNRGWRAPDKKNPARAMTVRPNTPEGLKRKDLLGIPW---- 134

Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
                R+   LQ+  +++  DI+W K N MP     R   +HE L   S   K + Y ++
Sbjct: 135 -----RLAFALQDDGWYLRADIIWNKPNAMPESVRDRPTRSHEYLFMFS---KQEQYVYD 186

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
            + +K AN     RS W I                 H    P+ L+   L ++T+PGD +
Sbjct: 187 RETVKEAN-GRNRRSVWDI---------NTSPFPGAHFATFPKKLVEPCLKATTRPGDFV 236

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           LDPFFGSGT G VA++LRR +IGIE+   Y+ +A  R+ +
Sbjct: 237 LDPFFGSGTVGLVAQQLRRKYIGIELNPAYVALAADRLKT 276


>gi|323170409|gb|EFZ56062.1| DNA methylase family protein [Escherichia coli LT-68]
          Length = 263

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 112/259 (43%), Gaps = 34/259 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYN---LQLNGQLYRPDHS--LVDAVTDSWDKFSS 77
           + +GN++ +L  +  +S+D +  DPPY+       G+  +  H+  L       +D F+ 
Sbjct: 28  LCRGNALEILPLIEPESIDALITDPPYSSGATHKAGRTNQGSHAKYLNGENLHRFDGFAG 87

Query: 78  FEAYDA-----FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
            E  DA     +T+ W+    R ++P G   V   +  +  +    Q   F     I W 
Sbjct: 88  -ENMDARSWAYWTQLWMAQAHRAVRPGGYALVFTDWRQLPALTDAFQASGFTWRGIIAWN 146

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K           F++  E ++W S     K  +  +D                 P+    
Sbjct: 147 KGRGSRTPHTGYFRHQCEYIVWGSKGHLDKSPSGPFDGCMT------------FPVIPS- 193

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
                   +K+HPT KPE L++  LV +   G  +LDPF GSGT+G  A K  R FIGIE
Sbjct: 194 --------KKMHPTGKPEELMAE-LVRTVNSGGTVLDPFMGSGTTGVAALKAGRKFIGIE 244

Query: 253 MKQDYIDIATKRI-ASVQP 270
               Y D+AT+R+  +++P
Sbjct: 245 TSDHYFDVATQRLKTAIEP 263


>gi|127480|sp|P14751|MTR1_RHOSH RecName: Full=Modification methylase RsrI; Short=M.RsrI; AltName:
           Full=Adenine-specific methyltransferase RsrI
 gi|11514446|pdb|1EG2|A Chain A, Crystal Structure Of Rhodobacter Spheroides (N6 Adenosine)
           Methyltransferase (M.Rsri)
 gi|34810984|pdb|1NW5|A Chain A, Structure Of The Beta Class N6-Adenine Dna
           Methyltransferase Rsri Bound To S-Adenosylmethionine
 gi|34810985|pdb|1NW6|A Chain A, Structure Of The Beta Class N6-Adenine Dna
           Methyltransferase Rsri Bound To Sinefungin
 gi|34810986|pdb|1NW7|A Chain A, Structure Of The Beta Class N6-Adenine Dna
           Methyltransferase Rsri Bound To
           S-Adenosyl-L-Homocysteine
 gi|46455|emb|CAA34475.1| unnamed protein product [Rhodobacter sphaeroides]
          Length = 319

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 124/295 (42%), Gaps = 49/295 (16%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           + +  L KLP  SV LI  DPPYN+ L                  WD       Y  + +
Sbjct: 46  DCLDTLAKLPDDSVQLIICDPPYNIMLA----------------DWDDHMD---YIGWAK 86

Query: 87  AWLLACRRVLKPNGTLWVIGSYHN---------IFRIGTMLQNLNFWILNDIVWRKSNPM 137
            WL    RVL P G++ + G             I  I  M QN    + N I+W   N M
Sbjct: 87  RWLAEAERVLSPTGSIAIFGGLQYQGEAGSGDLISIISHMRQNSKMLLANLIIWNYPNGM 146

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED----VQMRSDWLIP--ICSG 191
                R F N HE + W +   K K Y F+ DA++   ++      M+   L P  +  G
Sbjct: 147 S--AQRFFANRHEEIAWFA---KTKKYFFDLDAVREPYDEETKAAYMKDKRLNPESVEKG 201

Query: 192 SE-----RLRNKDGEKL----HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
                  R+   +G  L    HPTQKP A++ R++ + + PG  +LD F GSG +  VA 
Sbjct: 202 RNPTNVWRMSRLNGNSLERVGHPTQKPAAVIERLVRALSHPGSTVLDFFAGSGVTARVAI 261

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERG 297
           +  R+ I  +    + +   K++  +Q  G I+    + +  E    F   ++RG
Sbjct: 262 QEGRNSICTDAAPVFKEYYQKQLTFLQDDGLID-KARSYEIVEGAANFGAALQRG 315


>gi|39304|emb|CAA38200.1| unnamed protein product [Bacillus amyloliquefaciens]
          Length = 400

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 131/280 (46%), Gaps = 51/280 (18%)

Query: 1   MSQKNSLAINENQNSIFEWK-------DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
           +  KNS+ +NE  NSI E K        K+  G+ + + +++P ++VD IFADPP+NL  
Sbjct: 70  LENKNSVKLNE-FNSIQEIKPYFYTDLGKLYNGDCLELFKQVPDENVDTIFADPPFNL-- 126

Query: 54  NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
                  D    + VTD     +SF  Y  +   W+  C RVLKP G+L++    +NI +
Sbjct: 127 -------DKEYDEGVTDK----NSFSGYLDWYYKWIDECIRVLKPGGSLFI----YNIPK 171

Query: 114 IGTML-----QNLNF--WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
             T L     + LNF  WI  D+ +    P+ N    R   A+ +L++     K K +  
Sbjct: 172 WNTYLSEYLNRKLNFRNWITVDMKF--GLPIQN----RLYPANYSLLYYVKGDKPKTFNV 225

Query: 167 NYDALKAANEDVQMRSDW-------------LIPICSGSERLRNKDGEKLHPTQKPEALL 213
               L+      +   D+             L  + S    +R+   +     +    LL
Sbjct: 226 QRIPLQTCPHCGREIKDYGGYKNKMNPKGVTLSDVWSDIYPVRHSSSKNRKFNELSVKLL 285

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
            RI+  ST  GD++LDPF GSGT+ AV++ L R +IG E+
Sbjct: 286 DRIITMSTNEGDVVLDPFGGSGTTFAVSEMLGRKWIGFEL 325


>gi|41179391|ref|NP_958699.1| adenine DNA methyltransferase [Bordetella phage BPP-1]
 gi|40950130|gb|AAR97696.1| adenine DNA methyltransferase [Bordetella phage BPP-1]
          Length = 251

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 113/258 (43%), Gaps = 33/258 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYN---LQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           ++I+G ++  L  +P++SVD +  DPPY+      + +   PD       + S  ++ +F
Sbjct: 7   QLIQGEALPALIAMPSESVDAVITDPPYSSGGFSRDDKAKDPDAKYTQ--SGSQGRYPTF 64

Query: 79  -------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
                   +Y  +   W+  C RVLKP G       +  +  +   +Q    +    I W
Sbjct: 65  SGDSRDQRSYLTWCSLWIAECVRVLKPGGYFMAFTDWRQLPLMSDAVQAGGVFWRGLIAW 124

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
            K           F++  E ++W +     KG              VQ+  D     C  
Sbjct: 125 DKGRGARAPHKGYFRHQCEYVVWGT-----KGAA------------VQLEHDGPFDGCIQ 167

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           +   R+   +K H T KP AL+ R LV    PG ++LDPF GSGT+G  A    R FIGI
Sbjct: 168 AVVRRD---DKHHLTGKPTALM-RELVRPVMPGGVVLDPFAGSGTTGVAAVLSGRRFIGI 223

Query: 252 EMKQDYIDIATKRIASVQ 269
           E +  Y +I+  R+A+ +
Sbjct: 224 ERETAYAEISRTRLAAAE 241


>gi|295189263|gb|ADF83450.1| putative DNA methylase [Lactobacillus phage LBR48]
          Length = 282

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 124/303 (40%), Gaps = 85/303 (28%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD--AVTDSWDKFSSFEAYD 82
           KG+ + +++KLP  SVD I  DPPY   LN +L R    + D  AV + WD         
Sbjct: 6   KGDCLELMKKLPDNSVDTIITDPPYEY-LNHRLDR----IFDEQAVFNEWD--------- 51

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-------- 134
                      R++KP G +   G   +  R   ML  +      +I+W K+        
Sbjct: 52  -----------RIVKPKGLIVFFGRGESFHRWNCMLNGMGRKFKEEIIWEKNVSSTPFTA 100

Query: 135 ------------------------NP-MPNFRGRRFQNAHETLIWASPSPKAKGYTFNY- 168
                                   NP  PNF+  + +   + L  A  +PK      NY 
Sbjct: 101 IGRNHETISILGGGKIRKVKVPYFNPEKPNFK--KIEMDLKRLSSALKNPKEFSVISNYL 158

Query: 169 --------DALKAANEDVQMRSDWLIPICSGS------ERLRNKDGEKL--------HPT 206
                   +  K+A+       +   P  S S      E +R KD   +        HPT
Sbjct: 159 KSKQIAFTEPYKSAHSITVSGKNLKKPYVSLSVMRQVEEGIREKDVINVKFNRLHFEHPT 218

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           QKP AL+ R++  ++  GD ILDPF GSG++G   K L R+FIG+E+  +Y  +  +RI 
Sbjct: 219 QKPVALMERLMNLTSDEGDTILDPFMGSGSTGIACKNLGRNFIGMEIDDEYFGVTQRRIK 278

Query: 267 SVQ 269
             Q
Sbjct: 279 QAQ 281


>gi|298346628|ref|YP_003719315.1| putative site-specific DNA-methyltransferase [Mobiluncus curtisii
           ATCC 43063]
 gi|298236689|gb|ADI67821.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Mobiluncus curtisii ATCC 43063]
          Length = 291

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 124/283 (43%), Gaps = 57/283 (20%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYN-----------------------LQLNGQLYR 59
           ++ G+++ VLE+LP +S  LI+ DPP+N                       +   GQ Y 
Sbjct: 14  VVAGDNLPVLEQLPDESFQLIYIDPPFNTGKVQSRQSLKTVRSDVPVVGSRVGFQGQTYE 73

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
                V A  DS      F  Y  F    L    R+L P GTL++   Y  +     +L 
Sbjct: 74  TVRGKVTAYNDS------FSDYWGFLEPRLEQAWRLLAPTGTLYLHLDYREVHYAKVLLD 127

Query: 120 NL--NFWILNDIVWRKSNPMPNFRGRRFQNAHET-LIWASPSPKAKGYTFNYDALKAANE 176
            L      LN+I+W  +        R++   H+  L++       K Y F+ D++   + 
Sbjct: 128 ALFGRDCFLNEIIW--AYDYGGRSKRKWPAKHDNILVYVK---DQKQYYFDSDSV---DR 179

Query: 177 DVQMRSDWLIPICSGSERL--------------RNKDGEKLHPTQKPEALLSRILVSSTK 222
           +  M    + P  +   +L              + K G   + TQKPE +L RI+ +S++
Sbjct: 180 EPYMAPGLVTPEKAARGKLPTDVWWHTIVSPTGKEKTG---YATQKPEGILRRIVQASSR 236

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           PGD +LD F GSGT+GAVA  L R F+ I+   + I+I   R+
Sbjct: 237 PGDWVLDFFAGSGTTGAVAGTLERRFVLIDENPEAIEIMRSRL 279


>gi|319901658|ref|YP_004161386.1| DNA methylase N-4/N-6 domain protein [Bacteroides helcogenes P
           36-108]
 gi|319416689|gb|ADV43800.1| DNA methylase N-4/N-6 domain protein [Bacteroides helcogenes P
           36-108]
          Length = 584

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 128/304 (42%), Gaps = 63/304 (20%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II  + + +L++LP+ SVD  FADPPYN+          +   D   D  D    F+  D
Sbjct: 233 IINDDCLKILKELPSNSVDFCFADPPYNV----------NKKYDNCNDDIDIIEYFQWCD 282

Query: 83  AFTRAWLLACRRVLKPNGTL-------WVIGSYHNIFRIGTMLQNLNFWIL--------- 126
                W++   R++KP  T+       W I      F+    L     WI+         
Sbjct: 283 K----WIMELARIIKPGKTVAILNIPQWAIRH----FQCLNKLLKFQDWIIWEGLSVPVR 334

Query: 127 -------NDIVWRK--SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA-ANE 176
                  + I + K  +N +P +  +     H  L   S +   + Y      +K  A E
Sbjct: 335 MIMPAHYSVICFTKGEANDLPFYHLK-----HSPLEINSINTYKEFYCIRNSCIKKRAKE 389

Query: 177 D----VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
           +    VQ+ + W         RL++      HPTQ P   + R++   T  GD++LDPF 
Sbjct: 390 NIIDKVQVTNLWW-----DIHRLKHNSQRVDHPTQLPPMFMERLISIFTNEGDLVLDPFN 444

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL 292
           GSGT+   A+ L R + GIE+   Y DIA KR   +Q   N       GK +E   A N 
Sbjct: 445 GSGTTSLCAEMLGRKYFGIELSSKYYDIAIKRHVDLQAGIN-----PFGKHSETPKAKNS 499

Query: 293 LVER 296
           LV+R
Sbjct: 500 LVKR 503


>gi|304389659|ref|ZP_07371619.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304327063|gb|EFL94301.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 291

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 125/284 (44%), Gaps = 57/284 (20%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYN-----------------------LQLNGQLYR 59
           ++ G+++ VLE LP +S  LI+ DPP+N                       +   GQ Y 
Sbjct: 14  VVAGDNLPVLELLPDESFQLIYIDPPFNTGKVQSRQSLKTVRTDVPVAGSRVGFQGQTYE 73

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
                V A  DS      F  Y  F    L    R+L P GTL++   Y  +     +L 
Sbjct: 74  TVRGKVTAYNDS------FSDYWGFLEPRLEQAWRLLAPTGTLYLHLDYREVHYAKVLLD 127

Query: 120 NL--NFWILNDIVWRKSNPMPNFRGRRFQNAHET-LIWASPSPKAKGYTFNYDALKAANE 176
            L      LN+I+W  +        R++   H+  L++       K Y F+ D++   + 
Sbjct: 128 ALFGRDCFLNEIIW--AYDYGGRSKRKWPAKHDNILVYVK---DQKQYYFDSDSV---DR 179

Query: 177 DVQMRSDWLIPICSGSERL--------------RNKDGEKLHPTQKPEALLSRILVSSTK 222
           +  M    + P  +   +L              + K G   + TQKPE +L RI+ +S++
Sbjct: 180 EPYMAPGLVTPEKAARGKLPTDVWWHTIVSPTGKEKTG---YATQKPEGILRRIVQASSR 236

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           PGD +LD F GSGT+GAVA  L R F+ I+   + I+I  +R++
Sbjct: 237 PGDWVLDFFAGSGTTGAVAGTLERRFVLIDENPEAIEIMRRRLS 280


>gi|162145944|ref|YP_001600402.1| DNA methylase N-4/N-6 [Gluconacetobacter diazotrophicus PAl 5]
 gi|161784518|emb|CAP54051.1| putative DNA methylase N-4/N-6 [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 247

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 107/260 (41%), Gaps = 62/260 (23%)

Query: 41  DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG 100
           D+I  DPPY           D SL               A+D     W       LKP+G
Sbjct: 19  DMILVDPPYG----------DTSL---------------AWDRCVPDWPGKALAALKPSG 53

Query: 101 TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI------- 153
           +LWV GS  +        +N  +    ++VW K N   +F   RF+  HE L+       
Sbjct: 54  SLWVFGSLRSFLASSAAFRNAGWKYAQELVWEKQN-GSSFHADRFRRVHELLVQFYRDDT 112

Query: 154 -WAS------PSPKAKGYTF----------NYDALKAANEDVQ---MRSDWLIPICSGSE 193
            W +       +P A+  T             DA    +ED     MRS  +IP+     
Sbjct: 113 PWRAVYNSVPTTPDARARTVRRKHRPPHMGQIDAGHYVSEDGGPRLMRS--VIPV----- 165

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
             RN  G  +HPT+KP ALL  ++ +S  PG ++ D F GSG +G   +   R ++G E+
Sbjct: 166 --RNAHGRAIHPTEKPVALLEILIRTSCPPGGLVGDWFAGSGAAGVACRLAGRRYVGCEI 223

Query: 254 KQDYIDIATKRIASVQPLGN 273
                  A  RIASV PLG 
Sbjct: 224 DPVMAQKARDRIASVLPLGE 243


>gi|323344448|ref|ZP_08084673.1| DNA methylase [Prevotella oralis ATCC 33269]
 gi|323094575|gb|EFZ37151.1| DNA methylase [Prevotella oralis ATCC 33269]
          Length = 278

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 122/262 (46%), Gaps = 43/262 (16%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ-------LNGQLYRPDHSLVDAVTD 70
           E+ +KII  N + VL+KLP  S+DL+   PPYNL+        +G+  +  ++ +    D
Sbjct: 4   EYLNKIINANCMEVLKKLPNNSIDLVVTSPPYNLKNSTGNGMKDGRGGKWSNAALIKGYD 63

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND-- 128
           S+D     + Y  +    LL   RV+K +G ++    Y++ +R+   L      I+ D  
Sbjct: 64  SYDDCMPNDEYAKWQHEVLLELVRVIKDDGAIF----YNHKWRVQNGLMQDRHDIVYDVP 119

Query: 129 ----IVWRKSNPMPNFRGRRFQNAHETLIW-ASPSPKAKGYTFNYDALKAANEDVQMRSD 183
               I+W++   + NF    F   +E + + A    K   ++ NY  +            
Sbjct: 120 LRQIIIWKRKGGI-NFNAGYFLPTYEVIYFIAKKDFKLAPHSNNYGDV------------ 166

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           W I      +  RN      HP   P  L+ RI+ S+T    IILDPF GSGT+  VA  
Sbjct: 167 WEI-----MQEQRND-----HPAPFPVELIDRIISSTT--SQIILDPFMGSGTTAVVAAG 214

Query: 244 LRRSFIGIEMKQDYIDIATKRI 265
           L R FIGIE    Y ++A +R+
Sbjct: 215 LGRDFIGIEKSPKYCEVAMQRL 236


>gi|88854936|ref|ZP_01129602.1| DNA methyltransferase [marine actinobacterium PHSC20C1]
 gi|88816097|gb|EAR25953.1| DNA methyltransferase [marine actinobacterium PHSC20C1]
          Length = 286

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 135/288 (46%), Gaps = 48/288 (16%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNL-----------QLNGQLYRP-----DHSL 64
           D +++G+++SV+  LP +S  LI+ DPP+N            Q + +  R       +  
Sbjct: 11  DLVVQGDNLSVISALPDESFRLIYIDPPFNTGRTQRRQALTTQRSAEGARTGFGGNTYDT 70

Query: 65  VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--N 122
           +     S+D   +F  Y  F    L    R+L   GTL++   Y  +      L  L   
Sbjct: 71  IKGALYSYD--DTFADYWEFLEPRLHEAWRLLDDRGTLYLHLDYREVHYAKVALDALFGR 128

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
              LN+I+W  +        +++ + H+T++    +PK   Y FN       NE+V  R 
Sbjct: 129 ESFLNEIIW--AYDYGARATKKWPSKHDTILVYVKNPK--NYYFN-------NEEVD-RE 176

Query: 183 DWLIP-ICSGSERLRNK--------------DGEKL-HPTQKPEALLSRILVSSTKPGDI 226
            ++ P + +  +  R K                EK  + TQKPE +L RI+ +S++PGD 
Sbjct: 177 PYMAPGLVTPEKAARGKLPTDVWWHTIVSPTGKEKTGYATQKPEGILRRIVQASSQPGDW 236

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
           +LD F GSGT+GAVA+ L+R  + +E     I+I T+R++S     NI
Sbjct: 237 VLDFFAGSGTTGAVAQALKRRVVLVEQNPAAIEIITRRLSSETAFANI 284


>gi|189346183|ref|YP_001942712.1| DNA methylase N-4/N-6 domain protein [Chlorobium limicola DSM 245]
 gi|189340330|gb|ACD89733.1| DNA methylase N-4/N-6 domain protein [Chlorobium limicola DSM 245]
          Length = 368

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 126/294 (42%), Gaps = 74/294 (25%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQL-YRPDHSLVDAVTDSWDKFS 76
           ++I G++   ++ LP  +   +   PPY    +  +  Q+   PD  L D V    + FS
Sbjct: 95  QVINGDTRDSIKSLPDNTFRCVVTSPPYWGVRDYGVENQIGAEPD--LKDYVNALVEIFS 152

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWV-IGSYHN------------------------- 110
                           RRVLK +GT W+ IG+ +                          
Sbjct: 153 EV--------------RRVLKSDGTFWLNIGNTYTSGGRKWRQEDSKNKGRAMSYRPPTP 198

Query: 111 ----------IFRIGTMLQNLNFWIL-NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
                     +  +  M   L+ W L NDI+W K N  P     R   +HE L   S   
Sbjct: 199 DGLKKKDLIGVAWMVAMACQLDGWYLRNDIIWHKPNCQPESVKDRLTVSHEYLFMFS--- 255

Query: 160 KAKGYTFNYDALKAA----NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
           K++ Y FN +A+K +    N     R+ W I     +E          H    P+ L+  
Sbjct: 256 KSEQYYFNQEAIKESYTNGNGFKNKRTVWSINTEPCAE---------AHFAVFPKNLVRP 306

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            +++ ++  D+ILDPF+GSGT G V+ +L R  +GIE+ QDY+DIA+KR A VQ
Sbjct: 307 CILAGSEENDLILDPFYGSGTVGIVSMELNRKCVGIEINQDYVDIASKRNARVQ 360


>gi|308272266|emb|CBX28872.1| Modification methylase BglII [uncultured Desulfobacterium sp.]
          Length = 342

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 124/281 (44%), Gaps = 59/281 (20%)

Query: 17  FEWKDKII--KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           F  K+ I+   G+ + +L+ +P +S+ L+   PPYN                 +   ++K
Sbjct: 38  FSLKEDIVLYSGDCLELLKTIPDESLKLVVTSPPYN-----------------IGKEYEK 80

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHN---IFRIGTML----QNLNFWIL 126
               E Y     A +  C R L P+G++ W +G+Y +   I  + TML      L   + 
Sbjct: 81  RLKLERYIDQQAAVIRECVRCLSPDGSICWQVGNYVDNGAIIPLDTMLYPIFTGLGLSMR 140

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK-------------- 172
           N I+W   + +     RRF   +ET+IW +   K+  Y FN D ++              
Sbjct: 141 NRIIWHFEHGL--HCSRRFSGRYETIIWFT---KSDEYIFNLDPIRVPQKYPGKKYFKGP 195

Query: 173 -----AANEDVQMRSD-WLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGD 225
                + N   +   D W+IP       +++   EK  HP Q P  L+ R+++S T  GD
Sbjct: 196 NAGKYSCNPLGKNPGDLWVIP------NVKSNHVEKTGHPCQFPVELIERLVLSMTNEGD 249

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
            + DPF G+GTS   A + +R   G E    YI++A  RI 
Sbjct: 250 RVFDPFLGTGTSIIAAIRHKRRGAGAETVTKYINLARDRIG 290


>gi|56962596|ref|YP_174322.1| adenine-specific DNA methylase [Bacillus clausii KSM-K16]
 gi|56908834|dbj|BAD63361.1| adenine-specific DNA methylase [Bacillus clausii KSM-K16]
          Length = 403

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 127/287 (44%), Gaps = 60/287 (20%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I  G+ +  L+K+P +SVDLI+ DPP+  Q   +L   D+       DSW+   S + Y 
Sbjct: 3   IFLGDCLEQLKKIPDESVDLIYLDPPFYTQKTQKLKTRDNQKEYYFEDSWE---SIQEYF 59

Query: 83  AFTRAWLLACRRVLKPNGTLWV----IGSYHNIFRIGTMLQNLNFWILNDIVW---RKSN 135
            F +  L  C RVLK  G++++      S++    +  +     F   ++I+W   R SN
Sbjct: 60  NFIKVRLEECHRVLKKTGSIFLHCDKSASHYLRVALDEVFGMDKFQ--SEIIWAYKRWSN 117

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFN-----YDALKAANEDVQMR--------- 181
                      N H+T+ + S   K K + FN     Y A    ++ +Q R         
Sbjct: 118 SKVGLL-----NNHQTIYFYS---KTKKFKFNKIYTDYSATTNIDQILQERVRDENAKSV 169

Query: 182 --------------------SD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
                               SD W IP  +   + R       +PTQKP  L+ +IL   
Sbjct: 170 YKVDENGKPIIGKEKKGVPLSDVWNIPFLNPKAKERTG-----YPTQKPILLIEQILKLV 224

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           T  GD +LDPF GSGT+   A  + R +IGI++ +D I +  +R+ +
Sbjct: 225 TDEGDKVLDPFCGSGTTLVTANIMNRKYIGIDISEDAIQLTKQRLEN 271


>gi|34810987|pdb|1NW8|A Chain A, Structure Of L72p Mutant Beta Class N6-Adenine Dna
           Methyltransferase Rsri
          Length = 319

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 125/297 (42%), Gaps = 49/297 (16%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           + +  L KLP  SV LI  DPPYN+                +   WD       Y  + +
Sbjct: 46  DCLDTLAKLPDDSVQLIICDPPYNI----------------MPADWDDHMD---YIGWAK 86

Query: 87  AWLLACRRVLKPNGTLWVIGSYHN---------IFRIGTMLQNLNFWILNDIVWRKSNPM 137
            WL    RVL P G++ + G             I  I  M QN    + N I+W   N M
Sbjct: 87  RWLAEAERVLSPTGSIAIFGGLQYQGEAGSGDLISIISHMRQNSKMLLANLIIWNYPNGM 146

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED----VQMRSDWLIP--ICSG 191
                R F N HE + W +   K K Y F+ DA++   ++      M+   L P  +  G
Sbjct: 147 S--AQRFFANRHEEIAWFA---KTKKYFFDLDAVREPYDEETKAAYMKDKRLNPESVEKG 201

Query: 192 SE-----RLRNKDGEKL----HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
                  R+   +G  L    HPTQKP A++ R++ + + PG  +LD F GSG +  VA 
Sbjct: 202 RNPTNVWRMSRLNGNSLERVGHPTQKPAAVIERLVRALSHPGSTVLDFFAGSGVTARVAI 261

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLI 299
           +  R+ I  +    + +   K++  +Q  G I+    + +  E    F   ++RG +
Sbjct: 262 QEGRNSICTDAAPVFKEYYQKQLTFLQDDGLID-KARSYEIVEGAANFGAALQRGDV 317


>gi|154149830|ref|YP_001403448.1| DNA methylase N-4/N-6 domain-containing protein [Candidatus
           Methanoregula boonei 6A8]
 gi|153998382|gb|ABS54805.1| DNA methylase N-4/N-6 domain protein [Methanoregula boonei 6A8]
          Length = 292

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 114/272 (41%), Gaps = 58/272 (21%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I  G+++SVL  +P++SVDL+   PPYN    G  Y           D  D    +  
Sbjct: 39  NRIFCGDALSVLSGMPSESVDLVITSPPYNF---GHAY---------AQDPHDDTREWND 86

Query: 81  YDAFTRAWLLACRRVLKPNGTLWV-----IGSY---HNIFRIGTMLQNLNFWILNDIVWR 132
           Y A   A    C RVL+P G + V        Y   H+I  I   L  L      + +W 
Sbjct: 87  YFATLNAVWTECVRVLRPGGRMAVNVQPLFSDYVPTHHI--ISNQLLGLGLLWKAEFLWE 144

Query: 133 KSNPMPNFRGRRFQNAHETL--IWASPSPKAKGYTFNYDAL--------KAANEDVQMRS 182
           K+N           NA  T    W SPS     YT+ +  +            ED+ + S
Sbjct: 145 KNN----------YNAKYTAWGSWKSPSMPYIKYTWEFVEIFDKGTHKKTGRREDIDITS 194

Query: 183 D---------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
           D         W IP      R++  D    HP   PE L  R++   +   DI++DPF G
Sbjct: 195 DEFKEWVIGRWKIP---PEHRMKEFD----HPAMFPEELPRRVMKLFSYKNDIVIDPFNG 247

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           +GT+   A K  R FIGI++   Y D A +R+
Sbjct: 248 AGTTTLAAAKCGRRFIGIDVSHQYCDTAVRRL 279


>gi|255513890|gb|EET90155.1| DNA methylase N-4/N-6 domain protein [Candidatus Micrarchaeum
           acidiphilum ARMAN-2]
          Length = 314

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 140/327 (42%), Gaps = 87/327 (26%)

Query: 7   LAINENQ-------NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR 59
           + I ENQ       +S+F   DKII G++ISV+ +LPAKSVDL  ADPPY          
Sbjct: 1   MIITENQLGKITKIDSLF---DKIINGDAISVMGRLPAKSVDLTIADPPY---------- 47

Query: 60  PDHSLVDAVTDSWD-KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
                   V + WD K+ + E Y  +T  W+    R+ K N + W+ G    + +I  + 
Sbjct: 48  -----FKTVNEKWDFKWRTEEDYLVWTEKWIKELSRIAKTNSSFWLFGYVKLLSKILPIA 102

Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRR------FQNAHETLIW--ASPSPKAKGY------ 164
           +   F     IV  K   M +  GR+      F    E++ +   +  P  K +      
Sbjct: 103 EKYGFVFRQQIVVDKG--MRSISGRKTSTYKMFPTTTESIFFFVKNNQPNIKKFLKERQK 160

Query: 165 TFNYDALKAANEDVQMRSD----W----------LIPICSGSERLRN-----KDGEKLHP 205
              + A K  NE + ++++    W           IP     +RL+       D  +++ 
Sbjct: 161 ELGFTA-KEINEKLHVKTNGGGVWSLYTGENILAQIPTREMWDRLQEILKFKMDYSEVNF 219

Query: 206 TQKPEALLSRI-------------------------LVSSTKPGDIILDPFFGSGTSGAV 240
           T  P+   S +                         +++S+  G+++LDPF GSGT+   
Sbjct: 220 TFNPQMGFSDVWTDIDFYKEDRNHSTQKPLKLIERLVIASSNKGNLVLDPFLGSGTTAVA 279

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIAS 267
           + +L R FIGIE+ + Y  IA +RI +
Sbjct: 280 SMRLGRKFIGIEIDKKYSKIAEQRIKT 306


>gi|315655187|ref|ZP_07908088.1| adenine specific DNA methylase [Mobiluncus curtisii ATCC 51333]
 gi|315490442|gb|EFU80066.1| adenine specific DNA methylase [Mobiluncus curtisii ATCC 51333]
          Length = 291

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 126/284 (44%), Gaps = 57/284 (20%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYN-----------------------LQLNGQLYR 59
           ++ G+++ VLE+LP +S  LI+ DPP+N                       +   GQ Y 
Sbjct: 14  VVAGDNLPVLEQLPDESFQLIYIDPPFNTGKVQSRQSLKTVRTDAPVTGSRVGFQGQTYE 73

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
                V A  DS      F  Y  F    L    R+L P GTL++   Y  +     +L 
Sbjct: 74  TVRGKVTAYNDS------FSDYWGFLEPRLEQVWRLLAPTGTLYLHLDYREVHYAKVLLD 127

Query: 120 NL--NFWILNDIVWRKSNPMPNFRGRRFQNAHET-LIWASPSPKAKGYTFNYDALKAANE 176
            L      LN+I+W  +        R++   H+  L++     +   Y F+ +++   + 
Sbjct: 128 ALFGRDCFLNEIIW--AYDYGGRSKRKWPAKHDNILVYVKDQER---YYFDSESV---DR 179

Query: 177 DVQMRSDWLIPICSGSERL--------------RNKDGEKLHPTQKPEALLSRILVSSTK 222
           +  M    + P  +   +L              + K G   + TQKPE +L RI+ +S++
Sbjct: 180 EPYMAPGLVTPEKAARGKLPTDVWWHTIVSPTGKEKTG---YATQKPEGILRRIVQASSR 236

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           PGD +LD F GSGT+GAVA  L R F+ I+   + I+I  +R++
Sbjct: 237 PGDWVLDFFAGSGTTGAVAGTLERRFVLIDENPEAIEIMRRRLS 280


>gi|260587163|ref|ZP_05853076.1| DNA (cytosine-5-)-methyltransferase [Blautia hansenii DSM 20583]
 gi|283798265|ref|ZP_06347418.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. M62/1]
 gi|260542358|gb|EEX22927.1| DNA (cytosine-5-)-methyltransferase [Blautia hansenii DSM 20583]
 gi|291074045|gb|EFE11409.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. M62/1]
          Length = 296

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 128/306 (41%), Gaps = 70/306 (22%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I++G+++  L KLP K   +    PPY    N + Y            + D+  +  + +
Sbjct: 2   ILQGDALEELRKLPDKCCSVCVTSPPY---YNARDY-----------GAADQLGTESSPE 47

Query: 83  AFTRAWLLACR---RVLKPNGTLWV-IG-SYHNIFRIGTM---------------LQNLN 122
            +TR  + A R   RVLK +GTLW+ IG SY      G +               L++  
Sbjct: 48  EYTRKLVEAFREVARVLKDDGTLWLNIGDSYARHIEDGGIKRKDLIGIPWLLALALRSDG 107

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP------------------SPKAKGY 164
           +++  DI+W K N MP     R   +HE +   S                    PK  G 
Sbjct: 108 WYLRADIIWNKPNAMPESAKDRPARSHEYVFLLSKAAAYYYDAEAVKELAVGYDPKKPGR 167

Query: 165 ------------TFNYDALKAANEDVQMRSDWLIPICSGSERLRN------KDGEKLHPT 206
                        + +D  KA + +V   S  L    +G    R+      +  +  H +
Sbjct: 168 KRGNAKTFRGGTAYTHDQAKANSAEVDRGSHGLQRNETGKRNRRDVWTIATRPYKGAHLS 227

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
             PE L    +++ +KPGD +LDPF GSGT+GA A K  R++IGIE+  D   I  +R+A
Sbjct: 228 TFPEELAKICILAGSKPGDTVLDPFSGSGTTGAAALKEGRNYIGIEINPDTCKIQEQRLA 287

Query: 267 SVQPLG 272
                G
Sbjct: 288 EAAQEG 293


>gi|294789831|ref|ZP_06755059.1| DNA (cytosine-5-)-methyltransferase [Simonsiella muelleri ATCC
           29453]
 gi|294482213|gb|EFG29912.1| DNA (cytosine-5-)-methyltransferase [Simonsiella muelleri ATCC
           29453]
          Length = 224

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 113/250 (45%), Gaps = 42/250 (16%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+I G+ + +L+K+P  SVD +  DPPY + +        H+   AV      FS     
Sbjct: 5   KLIHGDCLDLLKKIPDGSVDCVITDPPYYVGMT-------HNAQKAV------FSDLMML 51

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL----NFWILNDIVWRKSNPM 137
             F        +RV+K  G ++V   +  +  +  +   +    N  + + IV R S   
Sbjct: 52  KPFFTQLFNELKRVVKKGGFIYVFTDWRTLPFLQPIFDEILGAKNLLVWDKIVGRVS--- 108

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           P +R +     HE +++A+     +           A+  ++ +S       SG+    +
Sbjct: 109 PYYRYQ-----HEFILFATNGTSERKI--------YASSIIKEKS-----FSSGA----H 146

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
              +K+HPTQKP  L  R++   T  GD++LD F GSG  G    +L R FIG E+ ++Y
Sbjct: 147 STNKKIHPTQKPVELFQRLITDGTDCGDVVLDCFMGSGACGVACVRLEREFIGFEINEEY 206

Query: 258 IDIATKRIAS 267
            + A K I S
Sbjct: 207 FNGAKKAINS 216


>gi|119386545|ref|YP_917600.1| DNA methylase N-4/N-6 domain-containing protein [Paracoccus
           denitrificans PD1222]
 gi|119377140|gb|ABL71904.1| DNA methylase N-4/N-6 domain protein [Paracoccus denitrificans
           PD1222]
          Length = 311

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 128/278 (46%), Gaps = 55/278 (19%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K +I   +++  + +LP +S+ LI   PPYN                 +  S++K +S E
Sbjct: 43  KAEIACEHNLKFMRRLPDESMSLIVTSPPYN-----------------IGKSYEKRTSQE 85

Query: 80  AYDAFTRAWLLACRRVLKPNGTL-WVIGSYHN---IFRIGTMLQNL----NFWILNDIVW 131
            Y     A +    R+L PNG++ W +G++ +   IF +  +L  L       + N IVW
Sbjct: 86  KYVEDQAACIAEAVRLLAPNGSICWQVGNHVDSGEIFPLDILLYPLFKHHGLQLRNRIVW 145

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK------------------- 172
              + +     +RF   HET++W +   K++ YTFN D ++                   
Sbjct: 146 TFGHGL--HCQKRFSGRHETILWFT---KSEDYTFNLDPVRVPSKYPNKKHFKGPNKGEL 200

Query: 173 AANEDVQMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
           ++N   +  SD W IP    S  +   D    HP Q P  L+ R++++ T  G+ +LDP+
Sbjct: 201 SSNPLGKNPSDVWDIPNVK-SNHVEKTD----HPCQFPIGLVERLVLALTNEGESVLDPY 255

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            G G+S   A K  R   G ++ + Y+DIA  RI  ++
Sbjct: 256 LGVGSSAIAALKHGRHAYGCDLDKAYVDIAWDRIHQLR 293


>gi|257439315|ref|ZP_05615070.1| DNA (cytosine-5-)-methyltransferase [Faecalibacterium prausnitzii
           A2-165]
 gi|257198190|gb|EEU96474.1| DNA (cytosine-5-)-methyltransferase [Faecalibacterium prausnitzii
           A2-165]
          Length = 296

 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 127/306 (41%), Gaps = 70/306 (22%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I++G+++  L KLP K   +    PPY    N + Y            + D+  +  + +
Sbjct: 2   ILQGDALEELRKLPDKCCSVCVTSPPY---YNARDY-----------GAADQLGTESSPE 47

Query: 83  AFTRAWLLACR---RVLKPNGTLWV-IG-SYHNIFRIGTM---------------LQNLN 122
            +TR  + A R   RVLK +GTLW+ IG SY      G +               L++  
Sbjct: 48  EYTRKLVEAFREVARVLKDDGTLWLNIGDSYARHIEDGGIKRKDLIGIPWLLALALRSDG 107

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP------------------SPKAKGY 164
           +++  DI+W K N MP     R   +HE +   S                    PK  G 
Sbjct: 108 WYLRADIIWNKPNVMPESAKDRPARSHEYVFLLSKAAAYYYDAEAVKELAVGYDPKKPGR 167

Query: 165 ------------TFNYDALKAANEDVQMRSDWLIPICSGSERLRN------KDGEKLHPT 206
                        + +D  KA N +V   S  L    +G    R+      +  +  H +
Sbjct: 168 KRGNAKTFRGGTAYTHDQAKANNAEVDRGSHGLQRNETGKRNRRDVWTIATRPYKGAHLS 227

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
             PE L    +++ +KPGD +LDPF GSGT+GA A K  R++IGIE+  D   I  +R+ 
Sbjct: 228 TFPEELAKICILAGSKPGDTVLDPFSGSGTTGAAALKEGRNYIGIEINPDTCKIQEQRLT 287

Query: 267 SVQPLG 272
                G
Sbjct: 288 EAAQEG 293


>gi|328954101|ref|YP_004371435.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
           11109]
 gi|328454425|gb|AEB10254.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
           11109]
          Length = 616

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 136/278 (48%), Gaps = 49/278 (17%)

Query: 30  SVLEKLPAKSVDLIFADPPYNL--------QL--NGQLYRPDHSLVDAVT--DSWDKFSS 77
           ++LE+   K +DLI+ DPP+++        QL   G+  + + S+++AV   D+W K + 
Sbjct: 91  ALLEQFRGK-IDLIYIDPPFDVGADFTMQVQLGGEGEALQKEQSILEAVAYRDTWGKGTD 149

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL------NDIVW 131
              +  + R  L+  + +L  +G ++V    H  +R+ + ++ L   IL      N+++W
Sbjct: 150 SYLHMMYER--LVLMKDLLSESGNIFV----HCDWRVNSYIRLLLDDILSGDNHQNELIW 203

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
             S  M +   R F N H+T+ W    P   G+TFN D ++    +   +         G
Sbjct: 204 IYSR-MASKNQRNFNNTHQTIFWYRKGP---GFTFNVDQVRTEYAESSKKRAGYAKKGVG 259

Query: 192 SERLRNKDGEKLHP--------------------TQKPEALLSRILVSSTKPGDIILDPF 231
           S  L+     +LH                     T+KPE LL  I+ +++  GD++ D F
Sbjct: 260 SGLLKEGSVCELHEKGKFPDDWMSIPFERNATYQTEKPENLLDVIIKAASNEGDLVADFF 319

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            GSGT+ AVA+KL R +IG+++ +  I ++ KR+  VQ
Sbjct: 320 CGSGTTMAVAEKLGRRWIGVDLGRYAIHVSRKRLIQVQ 357


>gi|328541919|ref|YP_004302028.1| DNA methylase N-4/N-6 domain protein [polymorphum gilvum
           SL003B-26A1]
 gi|326411670|gb|ADZ68733.1| DNA methylase N-4/N-6 domain protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 252

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 99/265 (37%), Gaps = 63/265 (23%)

Query: 35  LPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
           +PA    D+I ADPPY           D SL               A+D     WL   R
Sbjct: 17  MPAHGPFDMILADPPYG----------DTSL---------------AWDRRVEGWLPLAR 51

Query: 94  RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
             LKP G+LWV GS            +    I  +IVW K N    F   RF+  HE  +
Sbjct: 52  AALKPTGSLWVFGSLRCFMVTAIRFADAGLRIAQEIVWEKQN-GSGFHADRFKRVHELAV 110

Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER------------------- 194
              P+       +N         DVQ   D L       +R                   
Sbjct: 111 QFYPAETPWRDVYN---------DVQTTPDALARTVRRKKRPPHTGRIDAGHYVSQDGGP 161

Query: 195 --------LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                   +RN  G  +HPT+KP ALL  ++ +S   G ++ D F GSG +G   +   R
Sbjct: 162 RLMRSVIYVRNAHGRAIHPTEKPSALLEILIRTSCPEGGLVGDWFAGSGAAGEACRLSGR 221

Query: 247 SFIGIEMKQDYIDIATKRIASVQPL 271
            ++G E+     + A  RIA+V P 
Sbjct: 222 RYLGCEIDAAMAERANARIAAVLPF 246


>gi|15020663|emb|CAC44538.1| methyltransferase [Lactococcus lactis subsp. cremoris]
          Length = 282

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 117/255 (45%), Gaps = 49/255 (19%)

Query: 38  KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK 97
           K V+L    PPYN++                   ++K  S E Y +++  W+       +
Sbjct: 43  KLVNLTVTSPPYNIR-----------------KEYEKVMSVEDYISWSENWINLVYENTE 85

Query: 98  PNGTLWVIGSYHNIFRIGTML-------QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
            NG+ W+   Y  I   G  +           F+++ +++W  S  +   +    +N  E
Sbjct: 86  ENGSFWLNVGYMPIKDKGKAIPIPYLLWDKTKFFMIQELIWNYSAGVAAKKSLSPRN--E 143

Query: 151 TLIWASPSPKAKGYTFNYDALKAAN-------EDVQMRSD---------WLIP-ICSGSE 193
            ++W   +     YTFN D ++  N       ++ ++R +         W IP + SG  
Sbjct: 144 KILWYVKN--QNKYTFNLDDIRDPNVKYPNQKKNGKIRVNPLGKNPSDVWQIPKVTSGKN 201

Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           R      E++ HP Q P  L  RI+++S+K  D++LDPF GSGT+  ++K L R  +G E
Sbjct: 202 R---SAKERVPHPAQTPIELFKRIILASSKKNDLVLDPFIGSGTTAVISKSLDRYCLGFE 258

Query: 253 MKQDYIDIATKRIAS 267
           + +DY+DIA  RI +
Sbjct: 259 LNKDYLDIAIDRIKN 273


>gi|148556255|ref|YP_001263837.1| DNA methylase N-4/N-6 domain-containing protein [Sphingomonas
           wittichii RW1]
 gi|148501445|gb|ABQ69699.1| DNA methylase N-4/N-6 domain protein [Sphingomonas wittichii RW1]
          Length = 314

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 125/289 (43%), Gaps = 58/289 (20%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I+ G++ + L+ +PA S  +    PPY  Q        D+ +   +    D     +A
Sbjct: 32  DLIVHGSARAALDAMPAGSAHVAVTSPPYFGQR-------DYGVAGQIGIEPDP----DA 80

Query: 81  YDAFTRAWLLACRRVLKPNGTLWV-IGSYHN-------IFRIGTMLQNLNFWILNDIVWR 132
           Y A   A   A RRVL+ +GTLW+ +G  +         +R+   L    + + +DIVW 
Sbjct: 81  YVAALVAVFRALRRVLRDDGTLWLNLGDKYAGGALLGMPWRVALALVADGWRLRSDIVWH 140

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG- 191
           K N MP+   RR  + HE +   S   K   Y ++ DA++  +      S          
Sbjct: 141 KPNAMPHSNKRRPTHDHEYVFLLS---KTDDYRYDADAIREPHRTFGPDSRMRGGRGHFG 197

Query: 192 -----SERLRNK------DG---EKLHPTQK---------------------PEALLSRI 216
                 E+ +N+      DG   +  HP  +                     P AL++  
Sbjct: 198 RRGGTPEQGKNRGDANLHDGRWDQAFHPLGRNRRTVWSVPLGKYRDAHFAVFPPALITPC 257

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           + + +  G ++LDPFFG+GT+G VA+   R F+GIE+  DY  +A  RI
Sbjct: 258 IRAGSPEGGVVLDPFFGAGTTGLVARAEGRRFVGIELNPDYCAMARDRI 306


>gi|149923216|ref|ZP_01911628.1| putative DNA methylase [Plesiocystis pacifica SIR-1]
 gi|149815932|gb|EDM75449.1| putative DNA methylase [Plesiocystis pacifica SIR-1]
          Length = 324

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 122/287 (42%), Gaps = 56/287 (19%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ--------------------LNGQLYRPD 61
           +I +GN++ +L   P  S DLI+ DPP+N                        G+ YR  
Sbjct: 35  EIFEGNNLELLAAQPDGSFDLIYIDPPFNTGRRQSRTRTRMVGDAEGDRRGFGGKRYRTI 94

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
                + +DS+D F  F          L+   R+L P G+ ++   Y        +L ++
Sbjct: 95  KVGTRSFSDSFDDFLEF------LEPRLVEAHRLLAPTGSFFLHIDYREAHYCKVLLDDI 148

Query: 122 --NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
                 +N+++W       +   +R+ + H+T+ W +  PK   YTF ++A+        
Sbjct: 149 FGRASFMNELIWAYDYGARS--KKRWSSKHDTIFWYARDPK--NYTFEFEAMD------- 197

Query: 180 MRSDWLIP-ICSGSERLRNKDGEKL---------------HPTQKPEALLSRILVSSTKP 223
            R  ++ P + S  +  R K    +               +PTQKP  +L RI+   ++P
Sbjct: 198 -RIPYMAPGLVSAEKAARGKTPTDVWWHTIVPTKGKERTGYPTQKPLGILERIVKVHSRP 256

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
           GD +LD F GSGT+G    KL R+   I+   + I +  +R+    P
Sbjct: 257 GDRVLDFFAGSGTTGEACAKLGRNCTLIDANPEAIAVMRRRLEFANP 303


>gi|323978449|gb|EGB73533.1| DNA methylase [Escherichia coli TW10509]
          Length = 268

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 107/253 (42%), Gaps = 33/253 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYN---LQLNGQLYRPDHS--LVDAVTDSWDKFSS 77
           + +GN++ +L  +  +S+D +  DPPY+       G+  +  H+  L       +D F+ 
Sbjct: 28  LCRGNALEILPLIEPESIDALITDPPYSSGATHKAGRTNQGSHAKYLNGENLHRFDGFAG 87

Query: 78  FEAYDA-----FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
            E  DA     +T+ W+    R ++P G   V   +  +  +    Q   F     I W 
Sbjct: 88  -ENMDARSWAYWTQLWMAQAHRAVRPGGYALVFTDWRQLPALTDAFQASGFTWRGIIAWN 146

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K           F++  E ++W S     K  +  +D                 P+    
Sbjct: 147 KGRGSRTPHTGYFRHQCEYIVWGSKGHLDKSPSGPFDGCMT------------FPVIPS- 193

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
                   +K+HPT KPE L++  LV +   G  +LDPF GSGT+G  A K  R FIGIE
Sbjct: 194 --------KKMHPTGKPEELMAE-LVRTANSGGTVLDPFMGSGTTGVAALKAGRKFIGIE 244

Query: 253 MKQDYIDIATKRI 265
               Y ++A +R+
Sbjct: 245 TSDHYFEVAAQRL 257


>gi|194439356|ref|ZP_03071434.1| DNA methylase [Escherichia coli 101-1]
 gi|194421718|gb|EDX37727.1| DNA methylase [Escherichia coli 101-1]
          Length = 268

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 107/253 (42%), Gaps = 33/253 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYN---LQLNGQLYRPDHS--LVDAVTDSWDKFSS 77
           + +GN++ +L  +  +S+D +  DPPY+       G+  +  H+  L       +D F+ 
Sbjct: 28  LCRGNALEILPLIEPESIDALITDPPYSSGATHKAGRTNQGSHAKYLNGENLHRFDGFAG 87

Query: 78  FEAYDA-----FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
            E  DA     +T+ W+    R ++P G   V   +  +  +    Q   F     I W 
Sbjct: 88  -ENMDARSWAYWTQLWMAQAHRAVRPGGYALVFTDWRQLPALTDAFQASGFTWRGIIAWN 146

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K           F++  E ++W S     K  +  +D                 P+    
Sbjct: 147 KGRGSRTPHTGYFRHQCEYIVWGSKGHLDKSPSGPFDGCMT------------FPVIPS- 193

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
                   +K+HPT KPE L++  LV +   G  +LDPF GSGT+G  A K  R FIGIE
Sbjct: 194 --------KKMHPTGKPEELMAE-LVRTVNSGGTVLDPFMGSGTTGVAALKAGRKFIGIE 244

Query: 253 MKQDYIDIATKRI 265
               Y ++A +R+
Sbjct: 245 TSDHYFEVAAQRL 257


>gi|218886404|ref|YP_002435725.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757358|gb|ACL08257.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 253

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 111/259 (42%), Gaps = 40/259 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYN---LQLNGQLYRP---------DHSLVDAVTD 70
           II+G++++VL +LP +SVD +  DPPY+   + L  +   P           S    + D
Sbjct: 14  IIQGDALTVLRELPGESVDAVVTDPPYSSGGMTLTARQADPAAKYQTSGTKRSYPAMLGD 73

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
           + D+ S    +  +   WL  C R+ +    L V   +  +      +Q   +     +V
Sbjct: 74  NKDQRS----FTTWATLWLTECWRMARDGAPLLVFTDWRQLPSTTDAVQAAGWLWRGLVV 129

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W K +  P      F+   E L++A    KA   T N                       
Sbjct: 130 WHKPSARPLLG--EFRRDAEFLVYAVKR-KASPATRN--------------------CLP 166

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           G  R      EK+H T KP ALL R L++ T+PG ++LDPF G GT+G       R F+G
Sbjct: 167 GVLRHNVNPAEKVHLTGKPVALL-RDLLAVTQPGGLVLDPFTGGGTTGMACMATGRRFLG 225

Query: 251 IEMKQDYIDIATKRIASVQ 269
           IE+   Y  IA  RIA+  
Sbjct: 226 IELSPQYHRIAVDRIAAAH 244


>gi|154174237|ref|YP_001407809.1| DNA methylase [Campylobacter curvus 525.92]
 gi|153793065|gb|EAU00023.2| DNA methylase [Campylobacter curvus 525.92]
          Length = 309

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 131/299 (43%), Gaps = 70/299 (23%)

Query: 5   NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL 64
           N + I+E  N     K  +  G+ + +L+K+P +  DLI   PPY +   G+ Y   H  
Sbjct: 2   NKIKISEKFN--MSNKVTVFNGDCLKLLQKIPDEFCDLIITSPPYCM---GKAYENIHDD 56

Query: 65  VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNIFRIGTMLQNLNF 123
           ++   +   + + F+  D +         RVLK  G+L W IG + N       L  L+F
Sbjct: 57  IETFKNQ--QITIFD--DIY---------RVLKVGGSLCWQIGYHVNKLE----LIPLDF 99

Query: 124 WIL-----------------NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
           +I                  N I+W   + + + R  RF   HET++W +   K K Y+F
Sbjct: 100 YIYQIFMGNSKKYEHPLVLRNRIIWTFGHGLNSLR--RFSGRHETILWFT---KGKEYSF 154

Query: 167 NYDALK-------------------AANEDVQMRSD-WLIPICSGSERLRNKDGEKLHPT 206
           N D ++                   + N   +  SD W IP    +   + +     HP 
Sbjct: 155 NLDCIRIPQRYPGKRYYKGKNKGKFSGNPLGKNPSDVWDIPNVKANHIEKTE-----HPC 209

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           Q P A+  R++ + T    I+ DPF GSGTSG  +    R FIG E++++Y DIA  RI
Sbjct: 210 QFPIAIPQRLIKALTPINGIVFDPFMGSGTSGVASILENRKFIGAEIQKEYFDIAKNRI 268


>gi|307151149|ref|YP_003886533.1| DNA methylase N-4/N-6 domain-containing protein [Cyanothece sp. PCC
           7822]
 gi|306981377|gb|ADN13258.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7822]
          Length = 588

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 126/292 (43%), Gaps = 58/292 (19%)

Query: 6   SLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV 65
            L + ENQ +  E+ +KI+ G+ +  L+KLP  S+D  F DPPYNL+     Y  D  + 
Sbjct: 222 ELFLPENQLT-EEYTNKILTGDCLDYLKKLPDNSIDFAFVDPPYNLKKQYSGYSDDLEI- 279

Query: 66  DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI-----GSYHNIFRIGTMLQN 120
                        E Y  +   W+    RVLKP  T  ++        H IF   T+LQ 
Sbjct: 280 -------------EQYFQWCDQWIREIARVLKPGRTCAILNIPLRAIRHFIFS-KTLLQF 325

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHET-LIWASPSPKA-------KGYTFN----- 167
            N WI+ D +         F  R    AH T L ++   P+         G T       
Sbjct: 326 QN-WIVWDAL--------AFPVRLIMPAHYTILCFSKGKPRELPGLMGESGITTTTSAPE 376

Query: 168 -YDALKAANEDVQMRSDW--------------LIPICSGSERLRNKDGEKLHPTQKPEAL 212
            ++AL    +D  +RS                L  + S   RL++      HP Q P  L
Sbjct: 377 TFNALNPLADDFCLRSSCIKKRKNLNINDRTLLTDLWSDIHRLKHNSRRVDHPCQLPPHL 436

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           + R++   T+ G+++LD F G+GT+   A ++ R +IGIE+  +Y  IA  R
Sbjct: 437 MYRLISLFTEMGEVVLDCFNGAGTTTLAAHQIGRKYIGIEISPEYSKIAIDR 488


>gi|294495895|ref|YP_003542388.1| DNA methylase N-4/N-6 domain protein [Methanohalophilus mahii DSM
           5219]
 gi|292666894|gb|ADE36743.1| DNA methylase N-4/N-6 domain protein [Methanohalophilus mahii DSM
           5219]
          Length = 336

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 116/243 (47%), Gaps = 28/243 (11%)

Query: 35  LPAKSVDLIFADPPYNLQ---LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           +P +SVDLI  DPPY ++   L+    R ++ +VD   +  +       Y  F+ AW+  
Sbjct: 24  IPDESVDLIITDPPYGIKGDKLHQHYNRDENFVVDGYVEIPEA-----KYADFSLAWIKE 78

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
             R+LKP G+++++  Y N++ I   L   N   +N I+W+ +  +  +   ++ ++H  
Sbjct: 79  AERILKPGGSIYIVSGYTNLYHILHALYQTNLEEINHIIWKYNFGV--YTKTKYVSSHYH 136

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQ--------MRSD-WLIPICSGSERLRNKDGEK 202
           +++   + K++  TFN ++     E  +         R D W+I       +++NK+   
Sbjct: 137 ILYYQKAGKSR--TFNLESRYGTCEKTEDGRSLNYRDREDVWIINREYKPGKVKNKN--- 191

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
               + P  LL +I+  S+  GD++ D F G  ++  VA  L R   G E+ +      T
Sbjct: 192 ----ELPHKLLKKIIQYSSNEGDLVCDMFLGGFSTPTVAIGLNRRCTGFEISETMFRAKT 247

Query: 263 KRI 265
           + I
Sbjct: 248 REI 250


>gi|126178468|ref|YP_001046433.1| DNA methylase N-4/N-6 domain-containing protein [Methanoculleus
           marisnigri JR1]
 gi|125861262|gb|ABN56451.1| DNA methylase N-4/N-6 domain protein [Methanoculleus marisnigri
           JR1]
          Length = 326

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 122/266 (45%), Gaps = 33/266 (12%)

Query: 35  LPAKSVDLIFADPPYNLQLNG----QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
           +P  SVDLI  DPPY +  NG    Q Y  D + V    D + +  + + Y  F++ W+ 
Sbjct: 24  IPDDSVDLIVTDPPYGI--NGDRLHQHYNRDEAFV---VDGYVEVPASD-YGEFSQRWIQ 77

Query: 91  ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAH- 149
              R+L+P G+++++  Y N++ I   L+  +   +N I+WR S  +  +  R++ ++H 
Sbjct: 78  EAERILRPGGSIYIVSGYTNLYHILHALRGTHLREVNHIIWRYSFGV--YTSRKYVSSHY 135

Query: 150 ETLIWASPSPKAKGYTFNYDALKAANE--------DVQMRSD-WLIPICSGSERLRNKDG 200
             L +  P       TFN ++     E        + + R D W I           K G
Sbjct: 136 HVLFYEKPGGDR---TFNLESRYGTGERGPKNGSLNYRDREDVWCI-------NREYKPG 185

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +  +  + P  LL +++  S+  GD++ D F G  T+  VA  L R   G E+ +   D+
Sbjct: 186 QAKNKNELPTELLVKMIQYSSNEGDLVCDMFLGGFTTAKVAVGLNRRATGFEISERVFDL 245

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEP 286
               +   +P G +  T+ T +  EP
Sbjct: 246 KIAELRDTRP-GWLLSTLRTPETGEP 270


>gi|49188496|ref|YP_025343.1| Pac25I methylase [Pseudomonas alcaligenes]
 gi|5123478|gb|AAD40332.1|U88088_6 Pac25I methylase [Pseudomonas alcaligenes]
          Length = 300

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 121/293 (41%), Gaps = 83/293 (28%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY----------NLQLNGQLYRPDHSLVDAVTDSW 72
           + +G++++VL +LP+ SV  +   PPY           + L G + +  H LV       
Sbjct: 28  LFEGDALTVLRRLPSGSVRCVVTSPPYWGLRDYGIEEQIGLEGTMPQFLHRLV------- 80

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV-IGSYHN--------------------- 110
                         A     RRVL  +GTLW+ IG  +                      
Sbjct: 81  --------------AIFAEVRRVLTDDGTLWLNIGDGYTSGNRGYRAPDKKNPARAMDVR 126

Query: 111 ---------------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
                           +R+   LQ+  +++ +DIVW K N MP     R   +HE L   
Sbjct: 127 PDTPEGLKPKDLIGIPWRLAFALQDDGWYLRSDIVWNKPNAMPESVKDRPARSHEFLFML 186

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMR---SDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
           +   K++ Y +++ A++   +   +R   S W +           K     H    P  L
Sbjct: 187 T---KSEKYYYDWQAVREPADGGGLRNRRSVWHV---------NTKPFAGAHFATFPPDL 234

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           +   + +ST+PGD +LDPFFGSGT G V +   R ++GIE+  +Y+ +A  R+
Sbjct: 235 IRPCIQASTEPGDYVLDPFFGSGTVGLVCQDENRQYVGIELNPEYVALAADRL 287


>gi|18202058|sp|O52692|MTS1_STRCS RecName: Full=Modification methylase ScaI; Short=M.ScaI; AltName:
           Full=N-4 cytosine-specific methyltransferase ScaI
 gi|2865584|gb|AAC97178.1| ScaI methyltransferase [Streptomyces caespitosus]
          Length = 304

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 120/269 (44%), Gaps = 47/269 (17%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+S+ +L+ +P +  DL    PPYN+   G+ Y              +   S E Y 
Sbjct: 53  LYHGDSLELLKSMPQQIFDLTVTSPPYNI---GKEY--------------EGVLSIEEYI 95

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML-------QNLNFWILNDIVWRKSN 135
           ++   W+    R     G  W+   Y  +   G  +           F+++ ++VW    
Sbjct: 96  SWCETWMSRVHRATSAGGAFWLNVGYVPVPNQGKAVPIPYLLWDKSPFYMIQEVVWNYGA 155

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN-------EDVQMRSD----- 183
            + + +   F   +E  +W    P    Y F+ D+++  N       ++ +++ +     
Sbjct: 156 GVASRKS--FSPRNEKFLWYVRDPL--NYYFDLDSVRDPNVKYPNQKKNGKLKCNPLGKN 211

Query: 184 ----WLIP-ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
               W  P + SG++R  +      HP Q P A++ R++ + +    +ILDPF GSGT+ 
Sbjct: 212 PTDVWQFPKVTSGAKR--SSVERTAHPAQFPSAVIERVIKACSPSDGVILDPFLGSGTTS 269

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
             A+K  R  +GIE+++DY+DIA  R+ +
Sbjct: 270 LTARKQGRCSVGIEIREDYLDIAVGRLEA 298


>gi|119358292|ref|YP_912936.1| DNA methylase N-4/N-6 domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119355641|gb|ABL66512.1| DNA methylase N-4/N-6 domain protein [Chlorobium phaeobacteroides
           DSM 266]
          Length = 368

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 134/304 (44%), Gaps = 74/304 (24%)

Query: 12  NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQL-YRPDHSLVD 66
           N++ + E   ++I G++  +++ LP  +   +   PPY    +  +  Q+   PD  L D
Sbjct: 85  NRDQLDEDGIQVINGDTRDIIKSLPDNTFRCVVTSPPYWGVRDYGVENQIGAEPD--LQD 142

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV-IGSYHNI-------------- 111
            +    + FS                RRVL+P+GT W+ IG+ +                
Sbjct: 143 YIKALVEIFSE--------------VRRVLQPDGTFWLNIGNTYTSGGRKWRQEDSKNKG 188

Query: 112 ----FRIGT-----------------MLQNLNFWIL-NDIVWRKSNPMPNFRGRRFQNAH 149
               +R  T                 M   L+ W L NDI+W K N  P     R   AH
Sbjct: 189 RAMSYRPPTPDGLKKKDLIGVAWMVAMACQLDGWYLRNDIIWHKPNCQPESVKDRLTVAH 248

Query: 150 ETLIWASPSPKAKGYTFNYDALKAA----NEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
           E L   S   K++ Y FN +A+K +    N     R+ W I   S +E          H 
Sbjct: 249 EYLFMFS---KSEQYYFNQEAIKESYTNGNGFKNKRTVWSINTESCAE---------AHF 296

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
              P+ L+   +++ ++  D+ILDPF+G+GT G V+++L R  +GIE+  DY+ I+++R 
Sbjct: 297 AVFPKNLVRPCILAGSEERDLILDPFYGAGTVGIVSQELNRKCVGIEINPDYVYISSRRN 356

Query: 266 ASVQ 269
           A VQ
Sbjct: 357 ARVQ 360


>gi|296112748|ref|YP_003626686.1| modification methylase MboIB [Moraxella catarrhalis RH4]
 gi|295920442|gb|ADG60793.1| modification methylase MboIB [Moraxella catarrhalis RH4]
 gi|326563756|gb|EGE14007.1| modification methylase MboIB [Moraxella catarrhalis 46P47B1]
 gi|326564371|gb|EGE14599.1| modification methylase MboIB [Moraxella catarrhalis 12P80B1]
 gi|326566776|gb|EGE16915.1| modification methylase MboIB [Moraxella catarrhalis 103P14B1]
 gi|326567381|gb|EGE17496.1| modification methylase MboIB [Moraxella catarrhalis BC1]
 gi|326569906|gb|EGE19956.1| modification methylase MboIB [Moraxella catarrhalis BC8]
 gi|326571492|gb|EGE21507.1| modification methylase MboIB [Moraxella catarrhalis BC7]
 gi|326575225|gb|EGE25153.1| modification methylase MboIB [Moraxella catarrhalis CO72]
 gi|326577637|gb|EGE27514.1| modification methylase MboIB [Moraxella catarrhalis O35E]
          Length = 112

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 65/106 (61%), Gaps = 5/106 (4%)

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
           +K  N D Q +  W +P     E+ + K     HPTQKP  LLSRI++SST+ GD+ILDP
Sbjct: 1   MKKLNGDKQAKDVWRLPAVGSWEKTQGK-----HPTQKPLGLLSRIILSSTQKGDLILDP 55

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
           F GSGT+G  A  L R FIGI+ + ++++++ +R  ++ P    E 
Sbjct: 56  FSGSGTTGIAATILGRQFIGIDKELEFLELSKRRYQAITPKSKYEF 101


>gi|110005618|emb|CAK99936.1| hypothetical adenine specific dna methyltransferase protein
           [Spiroplasma citri]
          Length = 243

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 121/262 (46%), Gaps = 45/262 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY--------NLQLNGQ--LYRPDHSLVDAVTDS 71
           K+I G+++  ++ L   SVDLI  DPPY        N Q+N +  + +  +  ++A+ D+
Sbjct: 8   KLINGDALEFIKTLENDSVDLILTDPPYLYNLSKRENEQINEKSNITKSINKYINAIYDN 67

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV----IGSYHNIFRIGTMLQNLNFWILN 127
            +  +SF+        + ++  + +     +W+    I  Y +  R   ML +       
Sbjct: 68  -NLHNSFDINTYLDEFYRISKNKFM----LIWMNRQQIIDYLDWVRKKDMLYDF------ 116

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
            I+W K+NPMP      +Q+    +I  S   +   Y  +Y++ K            +  
Sbjct: 117 -ILWNKTNPMPT-NNHIYQDKEYCMIIYSKKHRIPNYKNDYESKKT-----------IFN 163

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
              G +  R       HPT+KP  + +R++   +K  D+ILD F GSGT+    ++L+R 
Sbjct: 164 YSIGKKITR-------HPTEKPLYIFNRLISKYSKENDLILDCFMGSGTTAYACEQLKRK 216

Query: 248 FIGIEMKQDYIDIATKRIASVQ 269
           ++G E+  +Y  I  KR+  +Q
Sbjct: 217 WLGCEINNEYYKIIKKRLKDIQ 238


>gi|309807159|ref|ZP_07701134.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
           03V1-b]
 gi|308166446|gb|EFO68650.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
           03V1-b]
          Length = 230

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 113/244 (46%), Gaps = 27/244 (11%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I   + + +L+ LP  S+DL+  DPPY ++  G                W +   F   +
Sbjct: 6   IFNQDCMQMLKDLPKNSIDLVVTDPPYIVKTEG----GGAGAFGYQNRKWHQEIEFMT-N 60

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF-WILNDIVWRKSNPMPNFR 141
            F+   L    +V+K    +++  S + + ++    +N    W  N I W K NP+P+  
Sbjct: 61  GFSNNVLDELCQVMK-KINIYIFCSQYQLTQLINYFENKKCNW--NLISWHKDNPVPSCN 117

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            +   +  E + +A       G T+              +  + +   +  E+ + K   
Sbjct: 118 NKYLSDT-EYIFFAREKGVKLGGTY------------YTKRKYYVTHINTKEKHQYK--- 161

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPT KP +++  ++++S+K  D+ILDPF GSG++G  A KL R FIGIE+K +Y  IA
Sbjct: 162 --HPTVKPVSIIDNLIINSSKEQDVILDPFMGSGSTGESALKLDRKFIGIEIKPEYYQIA 219

Query: 262 TKRI 265
             R+
Sbjct: 220 CSRL 223


>gi|293386443|ref|YP_003540605.1| DNA methylase [Erwinia amylovora ATCC 49946]
 gi|291201086|emb|CBJ48224.1| DNA methylase [Erwinia amylovora ATCC 49946]
          Length = 226

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 108/249 (43%), Gaps = 43/249 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + ++GN I ++   P KSVD I  DPPY   L G   R   ++   +TD W + +  E Y
Sbjct: 3   RFVQGNCIEIMSGYPEKSVDFILTDPPY---LVGFRDRSGRTIAGDITDEWLQPACREMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++   R  T  +   F I+   V+ KS      F
Sbjct: 60  ------------RVLKNDALMVSFYGWNRADRFITEWKAAGFTIVGHFVFTKSYTSKSAF 107

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G + + A+   I A   P+      +         DVQ    W               G
Sbjct: 108 VGYQHECAY---ILAKGRPRLPENPLS---------DVQ---GW------------QYTG 140

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K HPT+KP   L  ++ S T PG I+LDPF GSG++   A +  R +IGIE+ + Y   
Sbjct: 141 NKHHPTEKPVTSLQPLIESFTHPGAIVLDPFAGSGSTCVAALQSGRRYIGIELMEKYHRA 200

Query: 261 ATKRIASVQ 269
             +R+A+VQ
Sbjct: 201 GQRRLAAVQ 209


>gi|110598447|ref|ZP_01386718.1| DNA methylase N-4/N-6 [Chlorobium ferrooxidans DSM 13031]
 gi|110339897|gb|EAT58401.1| DNA methylase N-4/N-6 [Chlorobium ferrooxidans DSM 13031]
          Length = 368

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 128/294 (43%), Gaps = 74/294 (25%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQL-YRPDHSLVDAVTDSWDKFS 76
           ++I G++  ++++LP  +   +   PPY    +  +  Q+   PD  L D +    + FS
Sbjct: 95  QVINGDTRDIIKQLPDDTFRCVVTSPPYWGVRDYGVENQIGAEPD--LQDYIKTLVEIFS 152

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWV-IGSYHNI------------------FRIGT- 116
                           RRVLK +GT W+ IG+ +                    +R  T 
Sbjct: 153 E--------------VRRVLKSDGTFWLNIGNTYTSGGRKWRQEDSKNRGRAMSYRPPTP 198

Query: 117 ----------------MLQNLNFWIL-NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
                           M   L+ W L NDI+W K N  P     R   AHE L   S   
Sbjct: 199 DGLKKKDLIGVAWMVAMACQLDGWYLRNDIIWHKPNCQPESVKDRLTVAHEYLFMFS--- 255

Query: 160 KAKGYTFNYDALKAA----NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
           K++ Y FN +A+K +    N     R+ W I     +E          H    P+ L+  
Sbjct: 256 KSEQYYFNQEAIKESYTNGNGFKNKRTVWSINTEPCAE---------AHFAVFPKNLVRP 306

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            +++ ++  D+ILDPF+G+GT G V+++L R  +GIE+  DY+DI+ +R A VQ
Sbjct: 307 CILAGSEENDLILDPFYGAGTVGIVSQELNRKCVGIEINPDYVDISGRRNARVQ 360


>gi|237753134|ref|ZP_04583614.1| DNA methylase N-4/N-6 [Helicobacter winghamensis ATCC BAA-430]
 gi|229375401|gb|EEO25492.1| DNA methylase N-4/N-6 [Helicobacter winghamensis ATCC BAA-430]
          Length = 275

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 81/254 (31%), Positives = 118/254 (46%), Gaps = 35/254 (13%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G+++  L+KL + SVD+    PPYN Q N + +   + + DA +D  D+    E Y    
Sbjct: 3   GDALKELQKLQSNSVDIGVTSPPYNKQENKKGWLVKNVIYDATSDKLDE----EYYQKSQ 58

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNI-FRIGTMLQNLNFWIL-------NDIVWRKSNPM 137
            A L    RV K  G+ +     H I +  G ++  L  WI+        +I+W +    
Sbjct: 59  IAVLDEVYRVTKEGGSFFY---NHKIRWEKGRLIHPLE-WIVKTQWNLRQEIIWDRG-IA 113

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
            N RG RF    E + W    PK K             E++Q R   L  I     R+R 
Sbjct: 114 ANIRGWRFWQVEERIYWLQ-KPKGKNLI---------GEELQSRHALLSSIW----RIR- 158

Query: 198 KDGEKLHPTQKPEALLSRILVS--STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
            +    HP   P AL  R + S  + K G ++LDP+ GSGTSG  AK L   FIGI+  Q
Sbjct: 159 PESNNAHPAPFPLALPLRCIFSILNEKSG-VVLDPYCGSGTSGIAAKILNCEFIGIDNSQ 217

Query: 256 DYIDIATKRIASVQ 269
           +Y++ A  RIA+ +
Sbjct: 218 NYLEFAKHRIANYR 231


>gi|317176841|dbj|BAJ54630.1| adenine-specific DNA methylase [Helicobacter pylori F16]
          Length = 750

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 122/281 (43%), Gaps = 57/281 (20%)

Query: 23  IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +IK  +   L  L     +++D I+ DPP+N          D + +D   DS        
Sbjct: 378 LIKSENYQALNSLKNRYKETIDCIYIDPPFNTG-------SDFAYIDKFQDS-------- 422

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW---ILNDIVWRKSNP 136
            + +     L      L P G+ ++    +N   +G ML N  F      N+I+W  SN 
Sbjct: 423 TWLSLMHNRLELAYDFLSPQGSFYLHLD-NNANYLGRMLLNDIFGKENFRNEIIWYYSNK 481

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTF-------------------NYDALKAANED 177
           M N  G  F    ET++  S S K   Y F                   +   ++A +E+
Sbjct: 482 MAN-SGNSFAKNTETILNYSKSEK---YIFYRQKEPRSEPVLLSKREGRDGKNMRARDEN 537

Query: 178 VQMRSD----------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
            ++  +          W IPI   +   R K+ E L  TQKPE LL RI+ +S+    II
Sbjct: 538 GKVIYELSHERYVDTLWDIPIIGSTSTERVKNNENL--TQKPEKLLERIIQASSDENSII 595

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           LD F GSGT+ AVA KL+R +IGIEM + +  +   R+  V
Sbjct: 596 LDFFAGSGTTCAVAHKLKRKYIGIEMGEHFDSVILPRLKKV 636


>gi|237756015|ref|ZP_04584598.1| DNA methylase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691831|gb|EEP60856.1| DNA methylase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 267

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 125/263 (47%), Gaps = 41/263 (15%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS--LVDAVT-D 70
           N + ++ +++I G+++ +L+++P KS+DL    PPYN        +  H   LVD V  +
Sbjct: 2   NELEKFINQVIHGDALEILKQIPDKSIDLGITSPPYNK-------KEKHGGWLVDKVRYN 54

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF-----W- 124
            +    S E Y ++    L    RV K  G+ +   ++   +  G M+  L +     W 
Sbjct: 55  GYKDVMSEEEYQSWQVEVLNQLYRVTKEGGSFFY--NHKVRYEDGKMIHPLQWLLKTKWN 112

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIW-ASPSPKAKGYTFNYDALKAANEDVQMRSD 183
           I  +I+W +     N RG RF    E + W     PK          LK+ +   ++ S 
Sbjct: 113 IWQEIIWNR-RIAGNIRGWRFWQVEERIYWLVKGKPKE---------LKSKH--AKLTSV 160

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGSGTSGAVAK 242
           W I         R + G K HP   P  L +RI+ S     D I++DPF G+GT+   AK
Sbjct: 161 WDI---------RPEHGHKEHPAVFPIELPTRIISSILDENDGIVIDPFCGTGTTLVAAK 211

Query: 243 KLRRSFIGIEMKQDYIDIATKRI 265
            L + +IG+++ ++Y+D A KRI
Sbjct: 212 LLGKKYIGVDISKEYVDYAKKRI 234


>gi|255321947|ref|ZP_05363097.1| DNA methylase [Campylobacter showae RM3277]
 gi|255301051|gb|EET80318.1| DNA methylase [Campylobacter showae RM3277]
          Length = 299

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 123/291 (42%), Gaps = 71/291 (24%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK-FSSFEAYDAFTRAWLLACR 93
           +P +S+DLI ADPPY                  V + WD  + + E Y  +++ W+    
Sbjct: 19  VPDESIDLIIADPPY---------------FKVVGEKWDYIWRTEEDYLEWSKVWIKEAV 63

Query: 94  RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR----FQNAH 149
           RV++  G+ ++ G +  + R+  +L++    +   I+  K     + R  +    F N  
Sbjct: 64  RVIRIGGSFYLFGYFRMLSRLLPILEDAGLELRQQIILNKGMQAVSGRATKNYKIFPNVT 123

Query: 150 ETLI--WASPSPKAKGYTFNYD-----ALKAANEDVQMRS-------------------- 182
           E+++  +  P P AK +            K  NE + ++S                    
Sbjct: 124 ESILFLYKDPKPFAKSFLRQRQKDLCLTAKEINEKLGVKSNGGGMWSIYTGKNVCKQLPT 183

Query: 183 -----------DWLIPICSGSERLRNKDG-------------EKLHPTQKPEALLSRILV 218
                      D+ IP    S+    + G             ++ HPTQKP+ L+ R+++
Sbjct: 184 EELWNKLQIILDFDIPYSKISQTYNAQLGITDVWGDINFYSEKRFHPTQKPQKLIDRLVI 243

Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           +S+  GDI+LDPF G G++        R++IG E+ ++Y D + +R+   Q
Sbjct: 244 ASSNKGDIVLDPFMGGGSTAVSCVLNSRNYIGFELDKEYYDKSIERLNCRQ 294


>gi|28493738|ref|NP_787899.1| DNA modification methyltransferase [Tropheryma whipplei str. Twist]
 gi|28572924|ref|NP_789704.1| DNA methylase [Tropheryma whipplei TW08/27]
 gi|28411057|emb|CAD67442.1| putative DNA methylase [Tropheryma whipplei TW08/27]
 gi|28476780|gb|AAO44868.1| DNA modification methyltransferase [Tropheryma whipplei str. Twist]
          Length = 293

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 119/272 (43%), Gaps = 38/272 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNL------QLNGQLYRPDHSLVDAVTDSWDKFS 76
           +++GN+I  L KLP  S  LI+ DPP+N       Q +  +  P    +    + +   S
Sbjct: 16  VVQGNNIDFLHKLPDDSFQLIYIDPPFNTGKRQTRQCSKMVRSPYGEQIGFCGNRYKILS 75

Query: 77  S--------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWIL 126
                    F+ Y  F +  L    R+LKP G  ++   Y  +     +L ++      +
Sbjct: 76  ESRTEYADMFDDYLGFLKPRLHEAWRLLKPEGMFYLHLDYREVHYAKILLDSIFGRDSFI 135

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN--------YDALKAANEDV 178
           N+I+W           RR+   H+ ++  +  P+   Y F+        Y A      D 
Sbjct: 136 NEIIWAYDYGAKT--KRRWPAKHDNILVYAKDPRK--YLFDSENVDREPYMAPGLVTPDK 191

Query: 179 QMRSD-----WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
             R       W   I S + +   K G   +PTQKPE +L RI+ +S++P D +LD F G
Sbjct: 192 AKRGKLPTDVWWHTIVSPTGK--EKTG---YPTQKPEGVLRRIIQASSRPNDWVLDFFAG 246

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           SGT+G VA KL R F+ I+     + I   RI
Sbjct: 247 SGTTGIVAGKLGRKFVLIDNSPQAVKIMKLRI 278


>gi|75675042|ref|YP_317463.1| DNA methylase N-4/N-6 [Nitrobacter winogradskyi Nb-255]
 gi|74419912|gb|ABA04111.1| DNA methylase N-4/N-6 [Nitrobacter winogradskyi Nb-255]
          Length = 252

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 107/270 (39%), Gaps = 73/270 (27%)

Query: 35  LPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL-LAC 92
           +PA+   DLI ADPPY           D SL               A+D     WL LAC
Sbjct: 17  MPAQGPFDLILADPPYG----------DTSL---------------AWDRRVDGWLQLAC 51

Query: 93  RRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL 152
              LKP+G+LWV GS  +         + +     +IVW K N   +F   RF+  HE +
Sbjct: 52  A-ALKPSGSLWVFGSLRSFMATADQFADADLRYAQEIVWEKQNGT-SFHADRFKRVHELV 109

Query: 153 ----------------IWASPSPKAKG--------YTFNYDALKAANEDVQMRSDWLIPI 188
                           +  +P   A+         +T   DA    +ED           
Sbjct: 110 AQFYRADVPWSAVYNDVQTTPDATARTVRRKMPPPHTGRIDAGHYVSED----------- 158

Query: 189 CSGSERL-------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
             G  RL       RN  G  +HPT+KP  L+  ++ +S   G ++ D F GSG +G   
Sbjct: 159 --GGPRLMRSVIYARNCHGTAIHPTEKPSGLIEILIRTSCPQGGLVGDWFVGSGAAGEAC 216

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           +   R ++G E+     ++A  RI SV P 
Sbjct: 217 RLAGRRYVGCEIDAGMAELARGRITSVLPF 246


>gi|238764211|ref|ZP_04625164.1| DNA methylase [Yersinia kristensenii ATCC 33638]
 gi|238697624|gb|EEP90388.1| DNA methylase [Yersinia kristensenii ATCC 33638]
          Length = 262

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 106/251 (42%), Gaps = 30/251 (11%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK-FSSFEAYDAF 84
           GN++ +L  + + SVD +  DPPY+     +  R   +      +  +K F  F+  +  
Sbjct: 31  GNALEILPFIKSGSVDALITDPPYSSGATHKSGRTTTTPTSKYLNEENKRFEEFDGENMD 90

Query: 85  TRAWLLACR-------RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            R+W+L C        + +K  G   V   +  +     + Q   F     + W K    
Sbjct: 91  ARSWVLWCSLWMSHACKAVKAGGYSLVFTDWRQLPAATDVFQASGFVWRGIVAWNKGRGS 150

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                  F++  E ++W S     KG               +++S    P   G      
Sbjct: 151 RTPHTGYFRHQCEYIVWGS-----KG---------------KLKSSPNGPF-DGCLTFPV 189

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
              +KLHPT KPE L++  LV +  P  IILDPF GSGT+G  A K    FIGIE  + Y
Sbjct: 190 IPSKKLHPTAKPEELMAE-LVKTANPNGIILDPFMGSGTTGVAALKTGCQFIGIESNEHY 248

Query: 258 IDIATKRIASV 268
            ++A +R+ S 
Sbjct: 249 FEVAAQRLQST 259


>gi|71276169|ref|ZP_00652449.1| DNA methylase N-4/N-6 [Xylella fastidiosa Dixon]
 gi|71163087|gb|EAO12809.1| DNA methylase N-4/N-6 [Xylella fastidiosa Dixon]
          Length = 243

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 113/253 (44%), Gaps = 36/253 (14%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDAVT-----DSWDKFS 76
           +G+++ +L  + + SVD +  DPPY    ++++ +        +++ T     D    F 
Sbjct: 13  EGDALRLLCDIDSASVDAVITDPPYCSGAMRMSDRFKPTKRKYINSTTKHIAPDFDCDFR 72

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
               + A++  WL  CRRV +P G L V   +  +  +   +Q+  +     +VW K+ P
Sbjct: 73  DHRGFLAWSSQWLSECRRVTRPGGVLLVFTDWRMLPTLTDAVQSAGWAWQGIVVWDKT-P 131

Query: 137 MPNFRGRRFQNAHETLIWASP---SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
               +  RF++  E ++WAS    +PKA   T                     P+  G  
Sbjct: 132 ACRPQLGRFRSQAEFIVWASCGLMNPKAHPVT---------------------PV--GVF 168

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
                  EK H   KP AL+   LV    P   +LDPF GSGT+G  A +    FIG+E+
Sbjct: 169 ATGTAPREKRHQVGKPLALMEH-LVKIVPPTSTVLDPFAGSGTTGVAALRAGHQFIGMEI 227

Query: 254 KQDYIDIATKRIA 266
              Y D+A +R+A
Sbjct: 228 SPWYCDVAKQRLA 240


>gi|320104814|ref|YP_004180405.1| DNA methylase N-4/N-6 domain-containing protein [Isosphaera pallida
           ATCC 43644]
 gi|319752096|gb|ADV63856.1| DNA methylase N-4/N-6 domain protein [Isosphaera pallida ATCC
           43644]
          Length = 310

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 131/307 (42%), Gaps = 61/307 (19%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYN--------------------LQLNGQLYRPDHSLV 65
           G+++ VL KLP +  DLI+ DPP+N                    +   G  YR      
Sbjct: 13  GDNLDVLRKLPDQLADLIYIDPPFNTGKVQSRTQIRTIRSQEGDRVGFQGNRYRTIKVGT 72

Query: 66  DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NF 123
              +D +D     + + +F    L+   R+LK NGT +    Y  +     ML  +    
Sbjct: 73  TGYSDRFD-----DGFLSFLEPRLIEAYRILKDNGTFYFHIDYREVHYCKLMLDQIFGRE 127

Query: 124 WILNDIVWRKSNPMPNFRGR---RFQNAHETLIWASPSPKAKGYTFNYDAL--------- 171
             LN+++W       ++  R   ++   H+ ++    +P    Y FNY+ +         
Sbjct: 128 CFLNEVIWAY-----DYGARTKLKWPPKHDNILVYVKNPD--NYVFNYEDIDRIPYMAPG 180

Query: 172 ----KAANEDVQMRSDW---LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
               K A +       W   ++P  +GSE+         +PTQKP  +L RI+ +S+  G
Sbjct: 181 LVGPKKAEQGKPPTDTWWHTIVP-TNGSEKTG-------YPTQKPLGILRRIVRASSPVG 232

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            I+LD F GSGT+GA   +L R FI ++   D + + +KR   +  +  ++   L  + +
Sbjct: 233 GIVLDFFAGSGTTGAACLELNRRFILVDNSVDALKVMSKRFDGISSVNWVDFDPLPYQTS 292

Query: 285 EPRVAFN 291
            P   F+
Sbjct: 293 FPATRFS 299


>gi|156741069|ref|YP_001431198.1| adenine-specific DNA-methyltransferase [Roseiflexus castenholzii
           DSM 13941]
 gi|156232397|gb|ABU57180.1| Site-specific DNA-methyltransferase (adenine-specific) [Roseiflexus
           castenholzii DSM 13941]
          Length = 305

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 128/303 (42%), Gaps = 56/303 (18%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNL---QLNGQL 57
           M +     I+ N          I   +++ +L  LP+ SVDLI+ DPP+N    Q   QL
Sbjct: 1   MREAQHFMIDHNTTG------AIYLADNLDILRALPSGSVDLIYIDPPFNTGKHQQRVQL 54

Query: 58  YRPDHSLVDAVTDSWDKFSS-----------FEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
                   D V     ++ S           F+ Y AF    L+   RVL P+G+ +   
Sbjct: 55  KTERSDDGDRVGFQGQRYKSIILGSRRFSDVFDDYLAFLEPRLVEAHRVLAPSGSFYFHV 114

Query: 107 SYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMPNFRGR---RFQNAHETLIWASPSPKA 161
            Y  +     +L  +      LN+I+W       ++ GR   R+   H+ ++    +   
Sbjct: 115 DYREVHYCKVLLDAIFGRESFLNEIIWAY-----DYGGRPKNRWPPKHDNILLYVKN--L 167

Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSER---------------LRNKDGEKL-HP 205
             Y FN D ++        R  ++ P   G E+               +     EK  +P
Sbjct: 168 SRYVFNVDEIE--------RIPYMAPGLVGPEKAARGKLPTDCWWHTIVPTNGAEKTGYP 219

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           TQKP  +L RI+ +S+KPG ++LD F GSGT+G  A +L R FI ++   + + +  +R 
Sbjct: 220 TQKPLGILRRIVQASSKPGSLVLDFFAGSGTTGIAALELGRRFILVDNNPEALAVMARRF 279

Query: 266 ASV 268
             V
Sbjct: 280 DGV 282


>gi|306824121|ref|ZP_07457493.1| DNA (cytosine-5-)-methyltransferase [Bifidobacterium dentium ATCC
           27679]
 gi|304552657|gb|EFM40572.1| DNA (cytosine-5-)-methyltransferase [Bifidobacterium dentium ATCC
           27679]
          Length = 95

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 41/95 (43%), Positives = 62/95 (65%), Gaps = 5/95 (5%)

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
           +K  N   QM+  W   +    E++  K     HPTQKP  LL RI++SST+PGD++LDP
Sbjct: 1   MKEMNGGKQMKDVWTGSLTPKREKIEGK-----HPTQKPLYLLERIILSSTEPGDLVLDP 55

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           F GS T+G  A+KL R +IGI+ + +YI+++ +R+
Sbjct: 56  FCGSSTTGVAAQKLGRKYIGIDNEPEYIELSKRRL 90


>gi|110005034|emb|CAK99365.1| putative n6 adenine specific dna methyltransferase protein
           [Spiroplasma citri]
          Length = 243

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 119/262 (45%), Gaps = 45/262 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY--------NLQLN--GQLYRPDHSLVDAVTDS 71
           K+I G+++  ++ L   SVDLI  DPPY        N Q N    + +  +  ++A+ D+
Sbjct: 8   KLINGDALEFIKTLENDSVDLILTDPPYLYNLSKRENEQKNEKSNITKSINKYINAIYDN 67

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV----IGSYHNIFRIGTMLQNLNFWILN 127
            +  +SF+        + ++  + +     +W+    I  Y +  R   ML +       
Sbjct: 68  -NLHNSFDINTYLDEFYRISKNKFM----LIWMNRQQIIDYLDWVRKKDMLYDF------ 116

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
            I+W K+NPMP      +Q+    +I  S   +   Y  +Y++ K            +  
Sbjct: 117 -ILWNKTNPMPT-NNHIYQDKEYCMIIYSKKHRIPNYKNDYESKKT-----------IFN 163

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
              G +  R       HPT+KP  + +R++   +K  D+ILD F GSGT+    ++L+R 
Sbjct: 164 YSIGKKLTR-------HPTEKPLYIFNRLISKYSKENDLILDCFLGSGTTAYACEQLKRK 216

Query: 248 FIGIEMKQDYIDIATKRIASVQ 269
           ++G E+  +Y  I  KR+  +Q
Sbjct: 217 WLGCEINNEYYKIIKKRLKDIQ 238


>gi|325679154|ref|ZP_08158746.1| DNA (cytosine-5-)-methyltransferase [Ruminococcus albus 8]
 gi|324109159|gb|EGC03383.1| DNA (cytosine-5-)-methyltransferase [Ruminococcus albus 8]
          Length = 361

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 112/264 (42%), Gaps = 50/264 (18%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNL---------QLNGQLYRPDHSLVDAVTDSWDKFS 76
            ++ ++L KL  +S D+I  DPPY +            G L + D  + D     +D+  
Sbjct: 135 ADAKTILNKLKTESFDMILTDPPYRVISGGTGGKNAPRGMLSKNDGKIFDNNDIQFDE-- 192

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
                      ++  C RVLKP+   +   ++ N+  +   +Q   F I N +VW K+N 
Sbjct: 193 -----------YIPECYRVLKPDRQAYFFTNFLNLQPLMEAVQRAGFKIHNLLVWLKNNA 241

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS--ER 194
            PN   R +    E +++     KAK                       I  C      +
Sbjct: 242 TPN---RWYMKNCEYVLFCYKG-KAKA----------------------ISNCGSKTVHQ 275

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
             N  G+KLH T+KP  LL   + +ST+ GD ILDPF GSG++ A +  L R     E+ 
Sbjct: 276 FDNIKGQKLHETEKPVELLKMYIENSTEEGDWILDPFAGSGSTMAASLLLNRKVFTCEID 335

Query: 255 QDYIDIATKRIASVQPLGNIELTV 278
           + Y+ +   R  S+   G  E T+
Sbjct: 336 KKYLTVIKNRAISIIKNGTDERTL 359


>gi|308273938|emb|CBX30538.1| hypothetical protein N47_K27780 [uncultured Desulfobacterium sp.]
          Length = 354

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 122/287 (42%), Gaps = 60/287 (20%)

Query: 29  ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
           ++  + +   S+ LIFADPPYN+                    WD F S + Y  ++  W
Sbjct: 88  VTFFKTIKTSSIQLIFADPPYNIH----------------KAEWDTFESQKEYVDWSMEW 131

Query: 89  LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW-------------RKSN 135
           +   +RVL+PNG+L++ G    +  +     +L F     +VW             R   
Sbjct: 132 IKEAQRVLEPNGSLYICGFSEILADLKWAASSL-FKGCKWLVWFYRNKANLTSDWGRSHE 190

Query: 136 PMPNFRG-----------RRFQNAHETLIWASPSPKA------KGYTFNYDALKAANEDV 178
            + +FR            R   NAH       P  K+      K Y ++     A  +DV
Sbjct: 191 SLLHFRKSSKIIFNVDEVRVPYNAHTLKYPHHPQAKSSQYGNGKEYVWSPHPKGAKPKDV 250

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
                + IP  + +   R K     HPTQKP  L+ + +++S+ P  +++DPF GSGT+ 
Sbjct: 251 -----FEIPTLTNNSWEREK-----HPTQKPIELVKKCVLASSNPDGLVVDPFGGSGTTY 300

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           AVA+   R ++G E   +Y +   +R+   Q   +IE     G+  E
Sbjct: 301 AVAEAFNRKWLGTETNIEYCNTIKRRL---QDRTHIERIADNGEEAE 344


>gi|110004439|emb|CAK98777.1| putative adenine specific dna methyltransferase protein
           [Spiroplasma citri]
          Length = 243

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 119/262 (45%), Gaps = 45/262 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY--------NLQLN--GQLYRPDHSLVDAVTDS 71
           K+I G+++  ++ L   SVDLI  DPPY        N Q N    + +  +  ++A+ D+
Sbjct: 8   KLINGDALEFIKTLENDSVDLILTDPPYLYNLSKRENEQKNEKSNITKSINKYINAIYDN 67

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV----IGSYHNIFRIGTMLQNLNFWILN 127
            +  +SF+        + ++  + +     +W+    I  Y +  R   ML +       
Sbjct: 68  -NLHNSFDINTYLDEFYRISKNKFM----LIWMNRQQIIDYLDWVRKKDMLYDF------ 116

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
            I+W K+NPMP      +Q+    +I  S   +   Y  +Y++ K            +  
Sbjct: 117 -ILWNKTNPMPT-NNHIYQDKEYCMIIYSKKHRIPNYKNDYESKKT-----------IFN 163

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
              G +  R       HPT+KP  + +R++   +K  D+ILD F GSGT+    ++L+R 
Sbjct: 164 YSIGKKLTR-------HPTEKPLYIFNRLISKYSKENDLILDCFMGSGTTAYACEQLKRK 216

Query: 248 FIGIEMKQDYIDIATKRIASVQ 269
           ++G E+  +Y  I  KR+  +Q
Sbjct: 217 WLGCEINNEYYKIIKKRLKDIQ 238


>gi|282881331|ref|ZP_06290011.1| DNA (cytosine-5-)-methyltransferase [Prevotella timonensis CRIS
           5C-B1]
 gi|281304807|gb|EFA96887.1| DNA (cytosine-5-)-methyltransferase [Prevotella timonensis CRIS
           5C-B1]
          Length = 299

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 126/299 (42%), Gaps = 73/299 (24%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAYD 82
           I G+ I  ++ +P  S+DL+ ADPPY                  V   WD ++ + + Y 
Sbjct: 7   ILGDCIEKMKSIPDGSIDLVIADPPY---------------WKVVGQEWDYQWRTEKDYI 51

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            ++  W+    R+L+  GT +  G +  +  +   L N+   +   I+  K     + R 
Sbjct: 52  EWSLRWIREVARILRIGGTFYCFGYFRTLTLLVPYLDNIGLELRQQIILDKGIRAVSGRA 111

Query: 143 ----RRFQNAHETLIWA--------SPSPKAKGYTFNYDALKAANEDVQMRSD----WLI 186
               + F N  E++++          P  K++    N  A K  NE + ++S+    W I
Sbjct: 112 TKKYKMFPNVTESILFIIKDNKRFIKPFLKSRQQALNLKA-KEINEALGVKSNGGGMWSI 170

Query: 187 P----ICSG--SERLRNK----------------------------------DGEKLHPT 206
                +C    +E L NK                                    ++ HPT
Sbjct: 171 YTGKNVCEQFPTEELWNKLSKILQFDLPYNKLAQTFNPQMGYTDVWTDIDFYKEKRYHPT 230

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           QKP  L+ R++ +S+  GDI+LDPFFG G++      L+R++I IE+ + Y + A KRI
Sbjct: 231 QKPIKLIERLIAASSNEGDIVLDPFFGCGSTQLSCIDLKRNYIAIELDKRYYETALKRI 289


>gi|147679002|ref|YP_001213217.1| DNA modification methylase [Pelotomaculum thermopropionicum SI]
 gi|146275099|dbj|BAF60848.1| DNA modification methylase [Pelotomaculum thermopropionicum SI]
          Length = 318

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 127/295 (43%), Gaps = 80/295 (27%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           II G++++ L++LP ++V      PPY  L+        D+ + D +    D     E  
Sbjct: 39  IITGDALTALKQLPEETVQTCVTSPPYWGLR--------DYGIPDQIGTEMD---VCEYL 87

Query: 82  DAFTRAWLLACRRVLKPNGTLWV-IGSYHN------------------------------ 110
           D   + +    +RVLKP+GT W+ +G  +                               
Sbjct: 88  DKLVKVFR-EVKRVLKPDGTFWLNMGDGYTSGGRTYRAPDKKTDNDHVVRGLPFRPPTPA 146

Query: 111 ----------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
                      +R+  +LQ   +++  DI+W K N +P     R   AHE +   +   K
Sbjct: 147 GLKPKDLLGLPWRLAFLLQEDGWYLRADIIWFKPNILPESVKDRPTIAHEYIFLLT---K 203

Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG---------EKLHPTQKPEA 211
            + Y ++Y A+             L P  SG +  RNK            + H    P +
Sbjct: 204 NERYYYDYQAI-------------LEPAVSG-KGYRNKRSVWAVNTEPYPEAHFATFPPS 249

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           L+   +++ +KP D++LDPF GSGT+G VA + +R+FIGIE+  +Y  +A KR+ 
Sbjct: 250 LVLPCILAGSKPDDLVLDPFLGSGTTGLVALQKKRNFIGIELNPEYCALAEKRLT 304


>gi|209526335|ref|ZP_03274864.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
 gi|209493264|gb|EDZ93590.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
          Length = 271

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 111/279 (39%), Gaps = 53/279 (18%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++IIKGN I V++     S+DL    PPY                       D    ++ 
Sbjct: 5   NQIIKGNCIEVMKSFDENSIDLTITSPPY-----------------------DNLRKYKG 41

Query: 81  YDAFTRAWLLACRRVLKPNG-TLWVIGSYH-NIFRIGTML-------QNLNFWILNDIVW 131
           Y            RV KP G  +W++G         GT         + + F + + +++
Sbjct: 42  YTFPFEEIARQLYRVTKPGGIVVWIVGDATIKGSETGTSFKQALYFKEEIGFNLHDTMIF 101

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE-----------DVQM 180
           +KSNP+P    +R+ N  E +   S            D L A  E             Q 
Sbjct: 102 QKSNPIPQIYRKRYNNIFEYMFVFSKGNVKTHNPIKIDCLHAGLELHGTTYKNYSRGKQK 161

Query: 181 RSDWLIPICSGS------ERLRNKDGE----KLHPTQKPEALLSRILVSSTKPGDIILDP 230
           R     P+ +        E +  K  E    K HP   P AL    + S T PG+I+LDP
Sbjct: 162 RGKMAHPVKNQKIKGNIWEYVVGKKSEDQEAKDHPAPFPCALACDHIKSWTNPGEIVLDP 221

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
             GSGT+   A +L R +IGIE+  +Y ++A KRI  ++
Sbjct: 222 MCGSGTTCRSAFQLGRQYIGIEISHEYCELARKRIQKIE 260


>gi|400289|sp|P30774|MTX1_XANCC RecName: Full=Modification methylase XcyI; Short=M.XcyI; AltName:
           Full=N-4 cytosine-specific methyltransferase XcyI
 gi|155371|gb|AAA27608.1| methylase [Xanthomonas campestris]
          Length = 300

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 126/278 (45%), Gaps = 53/278 (19%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY--------NLQLNGQLYRPD--HSLV------- 65
           + +G++++VL +LP+ SV  +   PPY          Q+  ++  P   H LV       
Sbjct: 28  LFEGDALTVLRRLPSGSVRCVVTSPPYWGLRDYGIEEQIGLEVTMPQFLHRLVAIFAEVK 87

Query: 66  DAVTDS---W----DKFSS----FEAYDAFTRAWLLACRR----VLKPNGTLWVIGSYHN 110
             +TD    W    D ++S    + A D    A  +  R      LKP   + +      
Sbjct: 88  RVLTDDGTLWLNIGDGYTSGNRGYRAPDKKNPARAMDVRPDTPVGLKPKDLMGIP----- 142

Query: 111 IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
            +R+   LQ+  +++ +DIVW K N MP     R   +HE L   +   K++ Y +++ A
Sbjct: 143 -WRLAFALQDDGWYLRSDIVWNKPNAMPESVKDRPARSHEFLFMFT---KSEKYFYDWQA 198

Query: 171 LKAANEDVQMR---SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
            +   +   +R   S W          +  K     H T  P  L+   + +ST+PGD +
Sbjct: 199 AREPADGGGLRNRRSVW---------NVNTKPFAGAHFTTFPPELIRPCIHASTEPGDYV 249

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           LDPFFGSGT G V +   R ++GIE+  +Y+ +A  R+
Sbjct: 250 LDPFFGSGTVGLVCQDENRQYVGIELNPEYVTLAADRL 287


>gi|254674319|emb|CBA10103.1| putative adenine-specific DNA-modification methylase [Neisseria
           meningitidis alpha275]
          Length = 243

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 115/257 (44%), Gaps = 45/257 (17%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           ++K+   S  +    PPYN+   G+ Y    S++D            E Y  +   W+ +
Sbjct: 1   MDKISKGSFQMTITSPPYNI---GKEY---ESILD-----------LEHYLEWCERWMQS 43

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGT-------MLQNLNFWILNDIVWRKSNPMPNFRGRR 144
              + + +G  W+   Y ++ + G        +    NF++L ++VW  +  +      R
Sbjct: 44  IHHLTEDSGCFWLNLGYLHVEKKGLAVPIPYLLWDKTNFFLLQEVVWNYAAGVAC--RNR 101

Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAAN-------EDVQMRSD---------WLIPI 188
           F   +E L+W   +P    YTFN DA++  N       ++ +++ +         W I  
Sbjct: 102 FSPRNEKLLWYVKNPAK--YTFNLDAVRDPNVKYPNQKKNGKLKCNPLGKNPTDVWQIAK 159

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
            + S R R+      HP Q P  L+ RI+ +S+   D+ILDPF GSGT+     K  R  
Sbjct: 160 VT-SGRNRSSRERTAHPAQFPLELIERIIRASSNQNDVILDPFIGSGTTALAGLKNNRFV 218

Query: 249 IGIEMKQDYIDIATKRI 265
           IG E+  +YIDI  +R 
Sbjct: 219 IGFEINDEYIDIIKERF 235


>gi|110005177|emb|CAK99504.1| putative n6 adenine specific dna methyltransferase protein
           [Spiroplasma citri]
          Length = 243

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 119/262 (45%), Gaps = 45/262 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY--------NLQLN--GQLYRPDHSLVDAVTDS 71
           K+I G+++  ++ L   SVDLI  DPPY        N Q N    + +  +  ++A+ D+
Sbjct: 8   KLINGDALEFIKTLENDSVDLILTDPPYLYNLSKRENEQKNEKSNITKSINKYINAIYDN 67

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV----IGSYHNIFRIGTMLQNLNFWILN 127
            +  +SF+        + ++  + +     +W+    I  Y +  R   ML +       
Sbjct: 68  -NLHNSFDINTYLDEFYRISKNKFI----LIWMNRQQIIDYLDWVRKKDMLYDF------ 116

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
            I+W K+NPMP      +Q+    +I  S   +   Y  +Y++ K            +  
Sbjct: 117 -ILWNKTNPMPT-NNHIYQDKEYCMIIYSKKHRIPNYKNDYESKKT-----------IFN 163

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
              G +  R       HPT+KP  + +R++   +K  D+ILD F GSGT+    ++L+R 
Sbjct: 164 YSIGKKLTR-------HPTEKPLYIFNRLISKYSKENDLILDCFLGSGTTAYACEQLKRK 216

Query: 248 FIGIEMKQDYIDIATKRIASVQ 269
           ++G E+  +Y  I  KR+  +Q
Sbjct: 217 WLGCEINNEYYKIIKKRLKDIQ 238


>gi|71276089|ref|ZP_00652370.1| DNA methylase N-4/N-6 [Xylella fastidiosa Dixon]
 gi|71163172|gb|EAO12893.1| DNA methylase N-4/N-6 [Xylella fastidiosa Dixon]
          Length = 243

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 111/253 (43%), Gaps = 36/253 (14%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPY--NLQLNGQLYRPD-----HSLVDAVTDSWD-KFS 76
           +G+++ +L  + + SVD +  DPPY          ++P      +S    +   +D  F 
Sbjct: 13  EGDALRLLCDIDSASVDAVITDPPYCSGAMRMADRFKPTRTKYLNSTAKHIAPDFDCDFR 72

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
               + A++  WL  CRRV +P G L V   +  +  +   +Q+  +     +VW K+ P
Sbjct: 73  DHRGFLAWSSQWLSECRRVTRPGGVLLVFTDWRMLPTLTDAVQSAGWAWQGIVVWDKT-P 131

Query: 137 MPNFRGRRFQNAHETLIWASP---SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
               +  RF++  E ++WAS    +PKA   T                     P+  G  
Sbjct: 132 ACRPQLGRFRSQAEFIVWASCGLMNPKAHPVT---------------------PV--GVF 168

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
                  EK H   KP AL+   LV    P   +LDPF GSGT+G  A +    FIG+E+
Sbjct: 169 ATGTAPREKRHQVGKPLALMEH-LVKIVPPTSTVLDPFAGSGTTGVAALRAGHQFIGMEI 227

Query: 254 KQDYIDIATKRIA 266
              Y D+A +R+A
Sbjct: 228 SPWYCDVAKQRLA 240


>gi|262200004|ref|YP_003271213.1| DNA methylase N-4/N-6 domain protein [Haliangium ochraceum DSM
           14365]
 gi|262083351|gb|ACY19320.1| DNA methylase N-4/N-6 domain protein [Haliangium ochraceum DSM
           14365]
          Length = 313

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 109/253 (43%), Gaps = 47/253 (18%)

Query: 39  SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKP 98
           SVDL+ ADPPY +                  + WD F+S EAY  +  AWL    RVL P
Sbjct: 54  SVDLVVADPPYGI----------------AKERWDDFASLEAYVDWCDAWLAEVARVLSP 97

Query: 99  NGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
            G+ +V G    +  +              ++W   N   N  G  +  +HE+++     
Sbjct: 98  AGSAYVCGFSEILAEVKARSARRFAGGCRWLIWYYRNKA-NL-GSDWGRSHESILHLR-- 153

Query: 159 PKAKGYTFNYDALKAANED--------VQM---------RSDWLIPICSGSER------- 194
            K +    + DA++    D        VQ          R D   P   G++        
Sbjct: 154 -KQRRLRLDIDAVRVPYNDHTRKYPERVQAESSQYGQGRRRDRWQPHPLGAKPRDVFEIP 212

Query: 195 -LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
            L N   EK  H TQKPE L+ R +  +T PG ++LDPF GSGT+  VA++L R +I  +
Sbjct: 213 VLCNGMAEKTAHSTQKPEELVRRFIAGTTSPGALVLDPFAGSGTTAVVAQRLGRRWIAGD 272

Query: 253 MKQDYIDIATKRI 265
               Y+ +A +R+
Sbjct: 273 SDARYVGLARERL 285


>gi|327198531|ref|YP_004327118.1| adenine-specific DNA methyltransferase [Pseudoalteromonas phage
           H105/1]
 gi|304367926|gb|ADM26685.1| adenine-specific DNA methyltransferase [Pseudoalteromonas phage
           H105/1]
          Length = 228

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 121/250 (48%), Gaps = 35/250 (14%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +++G+ +  ++++ + SVDL+  DPPY   N +  G+       L  ++    D+     
Sbjct: 4   LMRGDCLERMKEIESGSVDLVLVDPPYDIKNTKAGGK-----SKLAKSMQVMNDQIREAN 58

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI---FRIGTMLQNLNFWILNDIVWRKSNP 136
             + F    L    RV K N  +++  +   +    +   M +  +F +   I W K+N 
Sbjct: 59  IVNGFDELILDELVRVNK-NINMYIFCNKAQLPMYMKYFVMERGCSFDL---IKWVKTNA 114

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           MP +  +   +  E   +A    + +GY    +   A+       + +  PI        
Sbjct: 115 MPTYNNKYLSDT-EYCFYA----RKRGYCNPENYSDAS-------TLYSAPI-------N 155

Query: 197 NKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
            KD +K  HPT KP  LL R++ +S+K GD ILD F GSG++G  AK L R+FIGIE+ +
Sbjct: 156 IKDKKKFNHPTIKPIPLLERLIRNSSKEGDNILDCFMGSGSTGVAAKNLNRNFIGIELDE 215

Query: 256 DYIDIATKRI 265
           +Y +IA +RI
Sbjct: 216 NYFNIAKERI 225


>gi|328953515|ref|YP_004370849.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
           11109]
 gi|328453839|gb|AEB09668.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
           11109]
          Length = 546

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 147/363 (40%), Gaps = 119/363 (32%)

Query: 19  WKDKIIKGNSISVL-EKLPAKSVDLIFADPPYNLQLNGQLYRPDHS------LVDAVTDS 71
           W++++  G+++++L E LP++SVDLI+ DPP+N +    +   + S       + A  D+
Sbjct: 4   WQNQLYFGDNLNILREYLPSESVDLIYLDPPFNSKATYNVLFAEKSGDASVAQITAFDDT 63

Query: 72  WD-------------------------KFSSF------EAYDAFTRAWLLACRRVLKPNG 100
           W                           F SF       AY       L+   RVLKP G
Sbjct: 64  WHWGREAEEAFHDLITTGPVKLSHLIAAFRSFLGQNDMMAYIVMMAIRLVELHRVLKPTG 123

Query: 101 TLWV----IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
           ++++      S++    + ++ +  NF   N+I+W++S P  +    RF  +H+T+ + +
Sbjct: 124 SIYLHCDPTASHYIKLLLDSIFEVKNF--RNEIIWKRSQPKAH-AVTRFSRSHDTIFFYA 180

Query: 157 PSPKAK------------------------GYTFNYDALKAANED--------------- 177
            S K K                        G  F    L   N +               
Sbjct: 181 KSEKTKFAQQYSRYKEDYVKKFYRHIEPETGRIFQLGDLTNPNRNRPNLTYEFPPGSGIT 240

Query: 178 -------VQMRSDW-----LIPICSGSERLRNK--------------DGEKLHPTQK--- 208
                   +M   W     +IP   G  RL+                D E LH + K   
Sbjct: 241 RVWRWTQEKMMKAWKDGMIVIPEQGGVPRLKRYFNELKGTLLTDIWVDIEHLHGSNKEWL 300

Query: 209 ------PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
                 PEALL RI+ +S+  GD++LDPF G GT+  VA++L+R +IGI++    I +  
Sbjct: 301 KYPTQKPEALLYRIIKTSSNEGDVVLDPFCGCGTATVVAERLKRRWIGIDITHLAITLIK 360

Query: 263 KRI 265
           KR+
Sbjct: 361 KRL 363


>gi|190572398|ref|YP_001970243.1| putative site-specific DNA-methyltransferase [Stenotrophomonas
           maltophilia K279a]
 gi|190010320|emb|CAQ43928.1| putative site-specific DNA-methyltransferase [Stenotrophomonas
           maltophilia K279a]
          Length = 236

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 110/259 (42%), Gaps = 38/259 (14%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLV---------DAV 68
           +++I+G+++++L  LPA S D +  DPPY       + +   P+   +         D  
Sbjct: 3   NELIQGDALTILPTLPANSFDALITDPPYASGGTHASARQRGPNEKYMQSGGPRLHADFP 62

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
           +D  D+ S      A+   WL  C RVL+    + +   +  +      LQ   F     
Sbjct: 63  SDERDQRSHL----AWMHLWLAQCNRVLRDGAPVLLFTDWRQLPLTTDALQCAGFTWRGV 118

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
            VW K+  +   RGR F N  E ++W S      G        +AA            P 
Sbjct: 119 AVWDKTGGVRPQRGR-FSNQAEYVVWGSKGGMPLG--------RAA------------PT 157

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
             G  R   +  +K H T KP  L+ R LV   + G  ILDPF GSGT+   A+    S+
Sbjct: 158 LPGVFREAVRKADKHHLTGKPTDLM-RQLVRICEQGGRILDPFAGSGTTLVAAEAEGYSW 216

Query: 249 IGIEMKQDYIDIATKRIAS 267
            GIEM   Y D+A  R+ S
Sbjct: 217 TGIEMTGHYFDVAKSRLPS 235


>gi|307151884|ref|YP_003887268.1| DNA methylase N-4/N-6 domain-containing protein [Cyanothece sp. PCC
           7822]
 gi|306982112|gb|ADN13993.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7822]
          Length = 329

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 118/270 (43%), Gaps = 54/270 (20%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           + +G+ +  L  LP +SVDL+FADPP+NL   G+ Y       + V+D      + + Y 
Sbjct: 28  LYQGDCLKFLSALPDESVDLVFADPPFNL---GKQYG------EGVSDQ----MAVDKYI 74

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           ++++ WL    RVLK  G+L+V          G  L     W  + I  R     P  RG
Sbjct: 75  SWSQEWLNESIRVLKSGGSLFVFNLPRWCIEYGAYLNRQGMWFRHWIACRMPKNFP--RG 132

Query: 143 RRFQNAHETLIW---ASPSPKAKGYT--------------FNYDALKAANEDVQMRSDWL 185
           +R   AH  L++     P+   K YT              +     K   + + +   W 
Sbjct: 133 KRMSPAHYGLLYYTKGEPTVFNKIYTPIQVCRHCGGEIRDYGGHRKKLNEKGINLMDVWD 192

Query: 186 IP---------------ICSGSERL-------RNKDGEKLHPTQKPEALLSRILVSSTKP 223
            P               + + +E +       R++  +K  P +    +L RI+  ++ P
Sbjct: 193 APEDVWEDATEADADEILWTLTEEMWADIPPVRHRQHKKRMPNELAPIMLERIIAMASNP 252

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           G II+DPF GSGT+   A+KL+R +IG E+
Sbjct: 253 GQIIIDPFGGSGTTFYAAEKLQRYWIGSEI 282


>gi|15838904|ref|NP_299592.1| site-specific DNA-methyltransferase [Xylella fastidiosa 9a5c]
 gi|9107480|gb|AAF85112.1|AE004042_11 site-specific DNA-methyltransferase [Xylella fastidiosa 9a5c]
          Length = 243

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 115/256 (44%), Gaps = 36/256 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVD----AVTDSWD- 73
           ++ +G+++ +L  + + SVD +  DPPY    ++++ +        ++     V   +D 
Sbjct: 10  RLHEGDALRLLCDIDSASVDAVITDPPYCSGAMRMSDRFQPTKKKYINNGTKHVAPDFDC 69

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
            F     + A++  WL  CRRV +P G L V   +  +  +   +Q+  +     +VW K
Sbjct: 70  DFRDHRGFLAWSSQWLSECRRVTRPGGVLLVFTDWRMLPTLTDAVQSAGWAWQGIVVWDK 129

Query: 134 SNPMPNFRGRRFQNAHETLIWASP---SPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           + P    +  RF++  E ++WAS    +PKA   T                     P+  
Sbjct: 130 T-PACRPQLGRFRSQAEFIVWASCGLMNPKAHPVT---------------------PV-- 165

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           G         EK H   KP AL+   L+    P   ILDPF GSGT+G  A +    FIG
Sbjct: 166 GVFPTGTAPREKRHQVGKPLALMEH-LIKIVPPASTILDPFAGSGTTGVAALRAGHRFIG 224

Query: 251 IEMKQDYIDIATKRIA 266
           +E+   Y D+A +R+A
Sbjct: 225 MEIAPYYCDVAKQRLA 240


>gi|307150290|ref|YP_003885674.1| DNA methylase N-4/N-6 domain-containing protein [Cyanothece sp. PCC
           7822]
 gi|306980518|gb|ADN12399.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7822]
          Length = 351

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 129/296 (43%), Gaps = 51/296 (17%)

Query: 5   NSLAINENQN--SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
           NSL   E Q   S+ EW++++I  + + VL ++P+  VDLI   PPY             
Sbjct: 9   NSLTDVEQQQIKSLQEWQNRMILSDCLPVLREMPSNLVDLIVTSPPY------------- 55

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW-------VIGSYHN-IFRI 114
              D+   ++   S  +  D F        +R+LKP GT         V G  HN + ++
Sbjct: 56  --ADSRKKTYGGISPNDYIDWFLPI-AQELKRILKPEGTFILNIKEKVVKGERHNYVIKL 112

Query: 115 GTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT--------- 165
              +Q   +    + +W K N  P     RF++A E  +  +   K K Y          
Sbjct: 113 ILAMQQQGWLWTEEYIWHKKNCYPGKWPNRFRDAWERCLQFNRQKKFKMYQERVMVPMGD 172

Query: 166 FNYDALKAANEDVQMR-------------SDWL---IPICSGSERLRNKDGEKLHPTQKP 209
           +    LK  ++  ++R             S+WL   +   +    L  +   K H    P
Sbjct: 173 WANSRLKKLSDTDKIRDPSKVESGFGKNISNWLGRSMAYPTNVLHLATECNNKNHSAAFP 232

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           ++L S  +   T+  D++LDPF GSGT+   AK+L R ++GIE+K++Y D+A   I
Sbjct: 233 KSLPSWFINLFTETSDLVLDPFVGSGTTCIAAKELGRHYLGIEIKKEYYDLAVSNI 288


>gi|119487543|ref|ZP_01621153.1| DNA-methyltransferase [Lyngbya sp. PCC 8106]
 gi|119455712|gb|EAW36848.1| DNA-methyltransferase [Lyngbya sp. PCC 8106]
          Length = 291

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 111/270 (41%), Gaps = 49/270 (18%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I +G+ + ++ +LP     L    PPYN                 +   ++   S E Y 
Sbjct: 24  IYQGDCLKLMNQLPEGYFSLTVTSPPYN-----------------IGKEYESVLSVEDYI 66

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML-------QNLNFWILNDIVWRKSN 135
           A+   W+    R    +G  W+   Y ++      +         + F+++ +IVW  S 
Sbjct: 67  AWMVEWIAQVYRCTSRDGAFWLNLGYLSLPHQAKAIPIPYLIWDKVPFYLIQEIVWNYS- 125

Query: 136 PMPNFRGRRFQNA-HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD----------- 183
                 G+ F +  +E  +W      A  Y FN D ++  N     +             
Sbjct: 126 --AGVAGKLFFSPRNEKFLWYVKD--ANHYIFNLDDVRDPNVKYPHQKKNGKLKCNTKGK 181

Query: 184 -----WLIP-ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                W IP + SG  R  +      HP Q P  L+SRI+++S+  GDI+ DPF GSG++
Sbjct: 182 NPTDVWQIPKVTSGKNR--SSKERTSHPAQFPIQLVSRIILASSNLGDIVFDPFLGSGST 239

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
              A +  R  IG E+   YID+A KRI +
Sbjct: 240 AEAAIRNGRKIIGFEINDLYIDMAIKRIKT 269


>gi|307151753|ref|YP_003887137.1| DNA methylase N-4/N-6 domain-containing protein [Cyanothece sp. PCC
           7822]
 gi|306981981|gb|ADN13862.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7822]
          Length = 312

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 133/294 (45%), Gaps = 60/294 (20%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL-VDAVTDSWDKF 75
           FE  + II G ++ +L++LP   +  +   PPY  Q +   Y  ++ + ++  TD +   
Sbjct: 31  FEEANFIIHGEALDMLKRLPDGLIQTVVTSPPYYGQRD---YDVENQIGIEKNTDEYIN- 86

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWV-IGSYH---NI----FRIGTMLQNLNFWILN 127
              E ++          +RVL+ +GTLW+ +G  +   N+    +R+   L+   + + +
Sbjct: 87  RLVEIFEE--------VKRVLREDGTLWINVGDKYIDGNLAGLPWRLALALRERGWILRS 138

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN----EDVQMRS- 182
           DI+W K N MP+    R    HE +   +   K   Y ++ DA++  +    E  +MR  
Sbjct: 139 DIIWYKPNAMPSSVRNRPTTDHEYIFLFA---KNSQYYYDADAIREPHITFSEKSKMRGG 195

Query: 183 -DWLIPICSGSERLRNKDGEKLH---------------------PTQK---------PEA 211
            + L       E+ +N     LH                     P  K         PE 
Sbjct: 196 RNHLGKNGGTPEQGKNSGNSNLHRGRWDQAFHPKGRNKRTVWEVPLSKFRDAHFAVFPEK 255

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           L+   +++      I+LDPFFGSGT G VA K  R FIGIE+ ++Y +IA+KRI
Sbjct: 256 LIEPCILAGCPENGIVLDPFFGSGTVGLVAHKKGRKFIGIELNENYCEIASKRI 309


>gi|2995646|gb|AAC08984.1| DNA modification methyltransferase M.XbaI [Xanthomonas campestris]
          Length = 423

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 122/279 (43%), Gaps = 46/279 (16%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + ++G+ +  L +L     DL++ DPP+           D     +  D+W        Y
Sbjct: 9   RAVQGDCLVELARLEECEADLVYLDPPFFTNRRHSSISRDRINAFSFDDAWGDLGE---Y 65

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVW---RKSNP 136
             F    L    RVLK +G+++V       F + T+L N+       ++I+W   R SN 
Sbjct: 66  ADFMEQRLREAHRVLKHSGSIFVHCDTSANFLLRTLLNNIFGASQFRSEIIWSYKRWSNS 125

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFN-----YDALKAANEDVQMR---------- 181
                 R    AH+T+++ S   K+  Y FN     Y      ++ +Q+R          
Sbjct: 126 -----ARNLLPAHQTILFYS---KSDAYKFNVLHGSYSETTNVDQILQLRQRDADGVSKY 177

Query: 182 -SDWLIPICSGSER-------------LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDI 226
            +D L     G+E+             L  K  E+  +PTQKP  LL RI+  ST PGD 
Sbjct: 178 ATDKLGNTIYGTEKNGVPLNDVWAIPFLNPKAKERTGYPTQKPILLLERIIEISTDPGDF 237

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           I+DPF GSGT+   A  L R   GI+  ++ + +A +RI
Sbjct: 238 IVDPFCGSGTTLVAAAILGRRAFGIDTSREAVALANRRI 276


>gi|296115409|ref|ZP_06834044.1| putative DNA methylase N-4/N-6 [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978048|gb|EFG84791.1| putative DNA methylase N-4/N-6 [Gluconacetobacter hansenii ATCC
           23769]
          Length = 247

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 104/260 (40%), Gaps = 62/260 (23%)

Query: 41  DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG 100
           D+I  DPPY           D SL               A+D     W       LKP+G
Sbjct: 19  DMILVDPPYG----------DTSL---------------AWDRRVADWPGKALAALKPSG 53

Query: 101 TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI--WASPS 158
           +LWV GS  +        +N  +    ++VW K N   +F   RF+  HE ++  +   +
Sbjct: 54  SLWVFGSLRSFLASNAAFRNAGWKYAQELVWEKQN-GSSFHADRFRRVHELIVQFYRDDT 112

Query: 159 PKAKGYTF----------------------NYDALKAANEDVQ---MRSDWLIPICSGSE 193
           P    Y                          DA    +ED     MRS  +IP+     
Sbjct: 113 PWRAVYNVVPTTSDARARTVRRRHRPPHMGRIDAGHYVSEDGGPRLMRS--VIPV----- 165

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
             RN  G  +HPT+KP ALL  ++ +S  PG ++ D F GSG +G   +   R ++G E+
Sbjct: 166 --RNAHGRAIHPTEKPVALLEILIRTSCPPGGLVGDWFAGSGAAGVACRLAGRRYVGCEI 223

Query: 254 KQDYIDIATKRIASVQPLGN 273
                  A  RIASV PLG 
Sbjct: 224 DPVMAQKARDRIASVLPLGE 243


>gi|317181433|dbj|BAJ59217.1| Type II restriction enzyme M protein [Helicobacter pylori F57]
          Length = 139

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/126 (39%), Positives = 70/126 (55%), Gaps = 5/126 (3%)

Query: 16  IFEWKDKII---KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           IF+ +D++    +G+   VL +      DLIFADPPY L  +G L      +V      W
Sbjct: 10  IFKSQDQLFTLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDW 67

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           DK  S    D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F ILN I W+
Sbjct: 68  DKEESVNDIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKILNLITWQ 127

Query: 133 KSNPMP 138
           K+NP P
Sbjct: 128 KTNPRP 133


>gi|193215282|ref|YP_001996481.1| DNA methylase N-4/N-6 domain-containing protein [Chloroherpeton
           thalassium ATCC 35110]
 gi|193088759|gb|ACF14034.1| DNA methylase N-4/N-6 domain protein [Chloroherpeton thalassium
           ATCC 35110]
          Length = 267

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 128/262 (48%), Gaps = 45/262 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ-------LNGQLYR-PDHSLVDAVTDSW 72
           +K I GN++ V++++P  S++L+   PPYNL+        +G+  +  + +L++  +   
Sbjct: 15  NKFICGNAVDVMKQIPDGSIELVVTSPPYNLKNSTGNGMKDGRGGKWSNAALINGYSHYN 74

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI-GTMLQNLN-----FWIL 126
           D     E Y  + R  L    R++  NG ++    Y++ +R+   +LQ+ N     F + 
Sbjct: 75  DNMPHDE-YVEWQRECLAEMLRIIPENGAIF----YNHKWRVQAGLLQDRNDIVSGFPVR 129

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETL-IWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
             I+WR+   + NF    F   +E + + A P         N+   K AN          
Sbjct: 130 QIIIWRRKGGI-NFNPGYFLPTYEVIYLIAKP---------NFKLAKKANAHGD------ 173

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
             I    +  +NK     HP   P  L+ RI++S+    D++LDPF GSGT+   AK L 
Sbjct: 174 --IWEFGQESKNK-----HPAPFPVELIERIILSTD--ADVVLDPFMGSGTTALAAKNLD 224

Query: 246 RSFIGIEMKQDYIDIATKRIAS 267
           R FIGI++  +Y ++A +R+A+
Sbjct: 225 RQFIGIDISPEYCEMAEERLAN 246


>gi|257088834|ref|ZP_05583195.1| predicted protein [Enterococcus faecalis CH188]
 gi|256997646|gb|EEU84166.1| predicted protein [Enterococcus faecalis CH188]
 gi|315160596|gb|EFU04613.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0645]
 gi|315579442|gb|EFU91633.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0630]
          Length = 230

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 113/259 (43%), Gaps = 48/259 (18%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN------GQLYRPDHSLVDAVTDSWDK 74
           +KI   + +  ++++P KSVDL+  DPPY ++        G+  R  H+ ++++T+    
Sbjct: 4   NKIYNEDCLEGMKRIPDKSVDLVIIDPPYLMKQGKSGGAFGRDKRSYHNEIESMTND--- 60

Query: 75  FSSFEAYDAFTRAWLLACRRVLKP-NGTLWV----IGSYHNIFRIGTMLQNLNFWILNDI 129
                    F R  L    RV+K  N  +W     +  Y N F       +L       +
Sbjct: 61  ---------FERKVLDELVRVMKKINLYVWCSKDQLQGYINYFSQKGCTLDL-------L 104

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
            W K+NP+P   G+   +    L +     K  G   +Y   K           ++ P  
Sbjct: 105 TWHKTNPVPTCNGKYLSDTEYLLFFKEKGVKVFG---SYSTKKKF---------YVTPTN 152

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
              + L        HPT KP  ++  ++++S++  +++LD F GSGT+   A    R FI
Sbjct: 153 KKDKDLYQ------HPTVKPLNIIENLVINSSQENEVVLDCFIGSGTTAVAAINTNRQFI 206

Query: 250 GIEMKQDYIDIATKRIASV 268
           G E +++Y D A +RI  +
Sbjct: 207 GFEKEKEYFDTANRRIEEI 225


>gi|220931356|ref|YP_002508264.1| DNA methylase N-4/N-6 domain protein [Halothermothrix orenii H 168]
 gi|219992666|gb|ACL69269.1| DNA methylase N-4/N-6 domain protein [Halothermothrix orenii H 168]
          Length = 386

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 135/290 (46%), Gaps = 55/290 (18%)

Query: 3   QKNSLAINENQNSIFE-----WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQL 57
           QK   A N N N I +     + +KII G+S  +L+++P  S+DLI   PPYN  L+ + 
Sbjct: 123 QKYFYARNHNFNVINQPLPEKYINKIICGDSEQILKEIPDNSIDLILTSPPYNFGLDYK- 181

Query: 58  YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
                       DS D +  +++Y +   +    C R+LK  G   +I +   +F     
Sbjct: 182 ------------DSRDGYY-WKSYFSKLFSIFKECIRILKYGGR--IIINVQPLFSDYIP 226

Query: 118 LQNL--NFWILN------DIVWRKSNPMPNFRGRRFQNAHETL--IWASPSPKAKGYTFN 167
             +L  NF+I N      +I+W K+N           N   T    W SPS     YT+ 
Sbjct: 227 THHLISNFFIKNKMIWKGEILWEKNN----------YNCKYTAWGSWKSPSSPYLKYTWE 276

Query: 168 YDALKAANEDVQMRSDWLIPICSGSE------------RLRNKDGEKLHPTQKPEALLSR 215
           +  +  A   ++ + D      +G E             +RN    + HP   PE L+ R
Sbjct: 277 FLEI-FAKGSLKKKGDKKNIDITGEEFKEWVSARWSIAPVRNMKKYQ-HPAVFPEELVYR 334

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           +L   +  GD+ILDPF G+GT+ AVA +L+R+++GI++  DY + A  R+
Sbjct: 335 VLKLFSYKGDVILDPFNGTGTTTAVAHRLKRNYLGIDISPDYCNTARGRL 384


>gi|301320551|gb|ADK69194.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 652

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 123/278 (44%), Gaps = 61/278 (21%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW---DKFSSFEAYDAFTRAW 88
           L++L   S+DL++ DPP+  Q         H LVD     +   D +   + Y  F +  
Sbjct: 16  LKQLKDNSIDLVYLDPPFFTQ-------KAHFLVDKTNKKYFFNDIWKDLKEYQEFLKIR 68

Query: 89  LLACRRVLKPNGTLWVI--GSYHNIFRI--GTMLQNLNFWILNDIVW---RKSNPMPNFR 141
           L+  +RVLK  G+++V    + ++I R+    +  ++NF   ++I+W   R SN      
Sbjct: 69  LIEIKRVLKSTGSVFVHCDKTANHIIRVLLDEIFGSINF--RSEIIWVYKRWSNS----- 121

Query: 142 GRRFQNAHETLIWASPSPKAK--------GYTFNYDAL-----KAANEDVQMRSD----- 183
            +   ++H+ +   S +   K          T N D +     K  N  +  + D     
Sbjct: 122 KKGLLDSHQNIYHYSKTNDFKFNVIYTDYSLTTNIDQILQLRVKDKNNKIVYKKDKNNNV 181

Query: 184 --------------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
                         W IP  +   + R       +PTQKP  LL RI+   T   D++LD
Sbjct: 182 VFSDLKKGVPLSDVWNIPFLNPKAKERTS-----YPTQKPIELLERIISLVTNENDVVLD 236

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           PF GSGTS   +K L R+FIG ++  D IDI  +R+ +
Sbjct: 237 PFVGSGTSVVASKLLNRNFIGFDINIDAIDITNQRLKN 274


>gi|127489|sp|P14230|MTSM_SERMA RecName: Full=Modification methylase SmaI; Short=M.SmaI; AltName:
           Full=N-4 cytosine-specific methyltransferase SmaI
 gi|47265|emb|CAA34479.1| unnamed protein product [Serratia marcescens]
 gi|152853|gb|AAA26570.1| methylase [Serratia marcescens]
          Length = 292

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 122/290 (42%), Gaps = 73/290 (25%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           KII G++   ++ L ++  D +   PPY    +    GQ+   D+ + D + D  D F  
Sbjct: 26  KIIVGDAREAVQGLDSEIFDCVVTSPPYWGLRDYGNGGQIGAEDN-INDYIKDLVDLFRD 84

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWV-IGSYHNI------------------------- 111
                          RR LK +GTLW+ IG  +                           
Sbjct: 85  V--------------RRTLKDDGTLWLNIGDSYTSGGRTWRDKDDKNKGRAMSYRPPTPE 130

Query: 112 -----------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
                      +R+   LQN  +++  DI+W K N  P     R   +HE +   S   K
Sbjct: 131 GLKPKDLIGVPWRLAFALQNDGWYLRTDIIWNKPNCQPESVRDRPTRSHEYIFLLS---K 187

Query: 161 AKGYTFNYDALKAANEDVQM-----RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
            K Y ++++++K    D +M     R+ W I           +     H    P A+   
Sbjct: 188 GKKYYYDWESIKEPASDPKMDKKNRRTVWNI---------NTEPYPGSHFAVFPRAMARL 238

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
            +++ ++PG  +LDPFFGSGT+G V ++L R  +GIE+ ++Y  +A +RI
Sbjct: 239 CVLAGSRPGGKVLDPFFGSGTTGVVCQELDRECVGIELNEEYASLAKERI 288


>gi|283785669|ref|YP_003365534.1| prophage DNA adenine methylase [Citrobacter rodentium ICC168]
 gi|282949123|emb|CBG88731.1| putative prophage DNA adenine methylase [Citrobacter rodentium
           ICC168]
          Length = 227

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 101/241 (41%), Gaps = 33/241 (13%)

Query: 38  KSVDLIFADPPYN---LQLNGQLYRPDHS--LVDAVTDSWDKFSSFEAYDA-----FTRA 87
           +S+D +  DPPY+       G+  +  H+  L       +D F+  E  DA     +T+ 
Sbjct: 7   ESIDALITDPPYSSGATHKAGRTNQGSHAKYLNGENLHRFDGFAG-ENMDARSWAYWTQL 65

Query: 88  WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
           W+    R ++P G   V   +  +  +    Q   F     I W K           F++
Sbjct: 66  WMAQAHRAVRPGGYALVFTDWRQLPALTDAFQASGFTWRGIIAWNKGRGSRTPHTGYFRH 125

Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
             E ++W S     K  +  +D                 P+            +K+HPT 
Sbjct: 126 QCEYIVWGSKGHLDKSPSGPFDGCMT------------FPVIPS---------KKMHPTG 164

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           KPE L++  LV +   G  +LDPF GSGT+G  A K  R FIGIE    Y D+AT+R+ +
Sbjct: 165 KPEELMAE-LVRTANSGGTVLDPFMGSGTTGVAALKAGRKFIGIETSDHYFDVATQRLKT 223

Query: 268 V 268
           V
Sbjct: 224 V 224


>gi|71275466|ref|ZP_00651752.1| DNA methylase N-4/N-6 [Xylella fastidiosa Dixon]
 gi|71900970|ref|ZP_00683083.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
 gi|71163766|gb|EAO13482.1| DNA methylase N-4/N-6 [Xylella fastidiosa Dixon]
 gi|71729275|gb|EAO31393.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
          Length = 243

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 111/253 (43%), Gaps = 36/253 (14%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPY--NLQLNGQLYRPD-----HSLVDAVTDSWD-KFS 76
           +G+++ +L  + + SVD +  DPPY          ++P      +S    +   +D  F 
Sbjct: 13  EGDALRLLCDIDSASVDAVITDPPYCSGAMRMADRFKPTRTKYLNSTAKHIAPDFDCDFR 72

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
               + A++  WL  CRRV +P G L V   +  +  +   +Q+  +     +VW K+ P
Sbjct: 73  DHRGFLAWSSQWLSECRRVTRPGGVLLVFTDWRMLPTLTDAVQSAGWAWQGIVVWDKT-P 131

Query: 137 MPNFRGRRFQNAHETLIWASP---SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
               +  RF++  E ++WAS    +PKA   T                     P+  G  
Sbjct: 132 ACRPQLGRFRSQAEFIVWASCGLMNPKAHPVT---------------------PV--GVF 168

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
                  EK H   KP AL+   L+    P   +LDPF GSGT+G  A +    FIG+E+
Sbjct: 169 ATGTAPREKRHQVGKPLALMEH-LIKIVPPTSTVLDPFAGSGTTGVAALRAGHQFIGMEI 227

Query: 254 KQDYIDIATKRIA 266
              Y D+A +R+A
Sbjct: 228 SPWYCDVAKQRLA 240


>gi|42560738|ref|NP_975189.1| DNA methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|42492234|emb|CAE76831.1| DNA methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
          Length = 662

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 122/275 (44%), Gaps = 55/275 (20%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW---DKFSSFEAYDAFTRAW 88
           L++L   S+DL++ DPP+  Q         H LVD     +   D +   + Y  F +  
Sbjct: 26  LKQLKDNSIDLVYLDPPFFTQ-------KAHFLVDKTNKKYFFNDIWKDLKEYQEFLKIR 78

Query: 89  LLACRRVLKPNGTLWVI--GSYHNIFRI--GTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
           L+  +RVLK  G+++V    + ++I R+    +  ++NF   ++I+W       + +G  
Sbjct: 79  LIEIKRVLKSTGSVFVHCDKTANHIIRVLLDEIFGSINF--RSEIIWVYKRWSNSKKG-- 134

Query: 145 FQNAHETLIWASPSPKAK--------GYTFNYDAL-----KAANEDVQMRSD-------- 183
             ++H+ +   S +   K          T N D +     K  N  +  + D        
Sbjct: 135 LLDSHQNIYHYSKTNDFKFNVIYTDYSLTTNIDQILQLRVKDKNNKIVYKKDKNNNVVFS 194

Query: 184 -----------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
                      W IP  +   + R       +PTQKP  LL RI+   T   D++LDPF 
Sbjct: 195 DLKKGVPLSDVWNIPFLNPKAKERTS-----YPTQKPIELLERIISLVTNENDVVLDPFV 249

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           GSGTS   +K L R+FIG ++  D IDI  +R+ +
Sbjct: 250 GSGTSVVASKLLNRNFIGFDINIDAIDITNQRLKN 284


>gi|322384140|ref|ZP_08057851.1| adenine-specific DNA methylase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321151132|gb|EFX44448.1| adenine-specific DNA methylase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 240

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 108/239 (45%), Gaps = 33/239 (13%)

Query: 35  LPAKSVDLIFADPPYNLQLNG----QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
           L   S DLI ADPPYNL+  G    +  RP H ++ A  D      SF+ Y  FT  WL 
Sbjct: 18  LLTNSADLIIADPPYNLKFGGTTMTKTKRPRHRVI-ANDDL-----SFKDYQRFTLEWLR 71

Query: 91  ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
              RVLK    ++V   +     I   ++ + F I N IVW K +    ++  RFQ  HE
Sbjct: 72  QAHRVLKDGHHIYVFIDWRMHPYIALWMRKIGFEIKNLIVWDKQSMGLGWQ-YRFQ--HE 128

Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE-KLHPTQKP 209
            +I+A               +K   +  ++RS     I     R++   G+  +HPT+KP
Sbjct: 129 LVIFA---------------IKGKTKARRIRSRKTADIL----RVKRIPGQYTVHPTEKP 169

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
             L+  I+ +ST+ G+ ++D F GSG        L R     E+ Q Y  +  KR   +
Sbjct: 170 TELMKIIVENSTEEGETVVDFFSGSGPVTEACLNLNRRVKAFEIDQKYYQMTVKRAEKI 228


>gi|300814334|ref|ZP_07094606.1| DNA (cytosine-5-)-methyltransferase [Peptoniphilus sp. oral taxon
           836 str. F0141]
 gi|300511601|gb|EFK38829.1| DNA (cytosine-5-)-methyltransferase [Peptoniphilus sp. oral taxon
           836 str. F0141]
          Length = 305

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 131/308 (42%), Gaps = 65/308 (21%)

Query: 15  SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ---LYRPDHSL--VDAVT 69
            I  +K+KII GN ++VL+KLP +S+     DPPYN +  G+    Y  +  +  V++ T
Sbjct: 2   EIDNFKNKIITGNCLNVLKKLPDESIAGCITDPPYNYEFIGKDWNQYEIERRMEKVNSKT 61

Query: 70  DS--------------------W--DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
            S                    W      +   Y  + + W     R+LKP   + V  S
Sbjct: 62  SSTLVKNIPYGSGLSGGVRNKRWYEKNRKNILEYREWVKTWAKELYRILKPGAYVMVFNS 121

Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS--------- 158
                 I    ++  F+  + IVWR+ + +P  +G   +   E +   +P          
Sbjct: 122 TRTSAHIQVAFEDEGFYARDTIVWRRQSGIP--KGLNAEKKLEKMGAKNPEIWRGWHSAL 179

Query: 159 ------------PKAKGYT-----FNYDALKAANEDVQ-MRSDWLIPICSGSERLRNKDG 200
                       P    Y      ++   LK  +E++   +S+ +  I   S     K+ 
Sbjct: 180 RNEWEAITVIQKPLINNYINTLTLYDVGLLKTESEEINGFQSNIIENIKRDS-----KNN 234

Query: 201 EKLHPTQKPEALLSRILVSSTKP---GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
              H T KP  L+ + L+S + P    +I++DPF GSGT+   AKKL   +IGIE+  DY
Sbjct: 235 TNTHITIKPLQLIEK-LISMSIPIHKNNIVIDPFLGSGTTAVAAKKLGLEWIGIEINPDY 293

Query: 258 IDIATKRI 265
           + IA +RI
Sbjct: 294 VKIAEERI 301


>gi|229037677|ref|ZP_04189516.1| DNA modification methylase-like protein [Bacillus cereus AH1271]
 gi|228727652|gb|EEL78789.1| DNA modification methylase-like protein [Bacillus cereus AH1271]
          Length = 227

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 107/247 (43%), Gaps = 43/247 (17%)

Query: 37  AKSVDLIFADPPYNLQLNGQLYRPDHSLV--------DAVTDSWDKFSSFEAYDAFTRAW 88
            + VD I   PPYNL   G      H++V        D ++   DK +  E Y  +    
Sbjct: 8   GQKVDCIVTSPPYNL--GGDF----HTMVGGKRVTYGDYISPYKDKLNE-EDYQKWQIDV 60

Query: 89  LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI------LNDIVWRKSNPMPNFRG 142
           L +C  VLK +G ++   ++ N    GT++     WI      ++ ++        N   
Sbjct: 61  LDSCFEVLKDDGFMFY--NHKNRIVKGTVISPFE-WIKKSKFNISQVIVMNLKSTANVDK 117

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           RRF   HE +   +  P  K   F                + L  +    +  R   G  
Sbjct: 118 RRFFPVHELIFVLTKVPSVKLNNF----------------ECLTDVWDMKKVPRKISG-- 159

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HP    E L  R +VSSTK G+I+LDPF GSGT+   A KL R FIG E+ ++YI IA 
Sbjct: 160 -HPATFHEELPRRCIVSSTKEGEIVLDPFMGSGTTAYSALKLNRKFIGFELSEEYISIAN 218

Query: 263 KRIASVQ 269
           KR+  ++
Sbjct: 219 KRLQELE 225


>gi|207092627|ref|ZP_03240414.1| adenine-specific DNA methylase [Helicobacter pylori HPKX_438_AG0C1]
          Length = 680

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 120/282 (42%), Gaps = 59/282 (20%)

Query: 23  IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +IK  +   L  L     +S+D I+ DPP+N          D + +D   DS        
Sbjct: 308 LIKSENYQALNSLKNRYKESIDCIYIDPPFNTG-------SDFAYIDKFQDS-------- 352

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW---ILNDIVWRKSNP 136
            + +     L      L P G+ ++    +N   +G ML N  F      N+I+W  SN 
Sbjct: 353 TWLSLIHNRLELAYDFLSPQGSFYLHLD-NNANYLGRMLLNDIFGKENFRNEIIWYYSNK 411

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV-----------QMRSD-- 183
           M N  G  F    ET++  S   K + Y F Y   +  +E V            MR+   
Sbjct: 412 MAN-SGNSFAKNTETILNYS---KNEEYIF-YRQKEPRSEPVLLSKREGRDGKNMRARDE 466

Query: 184 -----------------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
                            W IPI   +   R K+ E L  TQKPE LL RI+ +S+    I
Sbjct: 467 YGKVIYELSHERYVDTLWNIPIIGSTSTERVKNNENL--TQKPEKLLERIIQASSDENSI 524

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +LD F GSGT+ AVA KL+R +IGIEM + +  +   R+  V
Sbjct: 525 VLDFFAGSGTTCAVAHKLKRKYIGIEMGEHFDSVILPRLKKV 566


>gi|88602175|ref|YP_502353.1| DNA methylase N-4/N-6 [Methanospirillum hungatei JF-1]
 gi|88187637|gb|ABD40634.1| DNA methylase N-4/N-6 [Methanospirillum hungatei JF-1]
          Length = 451

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 119/274 (43%), Gaps = 52/274 (18%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           E+ D+II G+S  +L +LP   +DLI   PPYN  L             +  DS    + 
Sbjct: 151 EYLDQIICGDSEEILSRLPENCIDLIITSPPYNFGLE----------YSSSGDS----AH 196

Query: 78  FEAY-DAFTRAWLLACRRVLKPNGTLWV-----IGSY---HNIFRIGTMLQNLNFWILND 128
           ++AY D   R +    R VLK  G   V        Y   H++  I +   N       +
Sbjct: 197 WQAYLDKLYRVFAQGIR-VLKYGGRFIVNVQPLFSDYIPLHHL--ISSFFMNQKMIWKGE 253

Query: 129 IVWRKSNPMPNFRGRRFQNAHETL--IWASPSPKAKGYTFNY------DALKAA--NEDV 178
           I+W K+N           N   T    W SPS     YT+ +        LK +  +ED 
Sbjct: 254 ILWEKNN----------YNCKYTSWGSWKSPSSPYLKYTWEFIEIFCKGTLKKSGKSEDA 303

Query: 179 QMRSD----WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
            +  +    W++   S     R K     HP   PE L+ R L   +  GDIILDPF G+
Sbjct: 304 DISDEEFKSWVVAKWSIGPERRMKHFN--HPAMFPEELVERCLKLFSFQGDIILDPFNGA 361

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           GT+ AVA +  R FIG+++  +Y D A +R+  +
Sbjct: 362 GTTTAVAARTNRHFIGLDISSEYCDCARERLLQI 395


>gi|296126937|ref|YP_003634189.1| DNA methylase N-4/N-6 domain protein [Brachyspira murdochii DSM
           12563]
 gi|296018753|gb|ADG71990.1| DNA methylase N-4/N-6 domain protein [Brachyspira murdochii DSM
           12563]
          Length = 322

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 122/284 (42%), Gaps = 58/284 (20%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN-GQLYRPDHSLVDAVTDSWDKFSSFE 79
           +K I  +    +  LP   +DL   DPPYNL  + G L     S  D             
Sbjct: 40  NKTICNDFFESINYLPDNFIDLAIIDPPYNLNKDFGNLNFRKKSDND------------- 86

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y+ +  +++      LK   +++V     +   +  +L    F + N I W++      
Sbjct: 87  -YNQYIDSFISLIIPHLKKTASIYVCCDLFSSSAVYDVLSKY-FIVRNRITWQREKG--- 141

Query: 140 FRGRRF--QNAHETLIWASPSPKAKGYTFNYDALK------------------AANEDVQ 179
            RG +F  +NA E + +A+ S     Y FN DA+K                     E+ +
Sbjct: 142 -RGAQFNWKNALEDIWFATVS---NNYYFNIDAVKMKRRVIAPYREEGKPKDWQETEEGK 197

Query: 180 MR--------SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
            R         D  +P  S +E          HPTQKPE L++++L++S+K GDI+ DPF
Sbjct: 198 FRLTHPSNFWDDISVPYWSMAENT-------THPTQKPEKLIAKLLLASSKEGDIVFDPF 250

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
            GSGT+  VA KL R ++ IEM + Y  +   R+       NI+
Sbjct: 251 VGSGTTVVVANKLNRKYVSIEMDKYYALLTEYRLEKSNTDKNIQ 294


>gi|325679434|ref|ZP_08159018.1| DNA (cytosine-5-)-methyltransferase [Ruminococcus albus 8]
 gi|324108862|gb|EGC03094.1| DNA (cytosine-5-)-methyltransferase [Ruminococcus albus 8]
          Length = 361

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 110/261 (42%), Gaps = 50/261 (19%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNL---------QLNGQLYRPDHSLVDAVTDSWDKFS 76
            ++ ++L KL  +S D+I  DPPY +            G L + D  + D     +D+  
Sbjct: 135 ADAKTILNKLKTESFDMILTDPPYRVISGGTGGKNAPRGMLSKNDGKIFDNNDIQFDE-- 192

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
                      ++  C RVLKP+   +   ++ N+  +   +Q   F I N +VW K+N 
Sbjct: 193 -----------YIPECYRVLKPDRQAYFFTNFLNLQPLMEAVQRAGFKIHNLLVWLKNNA 241

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS--ER 194
            PN   R +    E +++     KAK                       I  C      +
Sbjct: 242 TPN---RWYMKNCEYVLFCYKG-KAKA----------------------ISNCGSKTVHQ 275

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
             N  G+KLH T+KP  LL   + +ST+ GD ILDPF GSG++ A +  L R     E+ 
Sbjct: 276 FDNIKGQKLHETEKPVELLKMYIENSTEEGDWILDPFAGSGSTMAASLLLNRKVFTCEID 335

Query: 255 QDYIDIATKRIASVQPLGNIE 275
           + Y++    R  S+   G  E
Sbjct: 336 KKYLETIKNRAISIIKNGTDE 356


>gi|87306946|ref|ZP_01089092.1| DNA modification methylase M.SthI [Blastopirellula marina DSM 3645]
 gi|87290319|gb|EAQ82207.1| DNA modification methylase M.SthI [Blastopirellula marina DSM 3645]
          Length = 302

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 122/295 (41%), Gaps = 70/295 (23%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ------LYRPDHSLVDAVTDSWDK 74
           D I  G++  VL   P + +D++   PPY  Q + Q      L +     +D +      
Sbjct: 18  DTIHSGDATVVLADWPDEFIDVVVTSPPYFQQRDYQGEDQIGLEKTPAEYIDRLV----- 72

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI--------FRIGTMLQNLNFWIL 126
                       A     RR LKP G++WV+     +        +R    +++  + + 
Sbjct: 73  ------------ALFAQVRRTLKPTGSIWVVLGDKYVSGELLGMPWRFALAMKDAGWILR 120

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN----EDVQMRS 182
           +D++W+K N MP+    R    HE + + S   K+K Y ++ DA++  +    E+ +M+ 
Sbjct: 121 SDVIWQKPNAMPSSVKTRPTTDHEYVFFFS---KSKDYYYDADAIREPHVTFSENSRMKG 177

Query: 183 DWLIPICSGSERLRNKDG-----------EKLHPTQK---------------------PE 210
                   G      K+G           +  HP  +                     PE
Sbjct: 178 GRRHFHQRGGTPEAGKNGGSSNLHDARWDQAFHPQGRNKRTVWSISLSKFREAHFAVFPE 237

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
            L+   L+++     + LDPF GSGT G VA+KL R ++G++   +Y ++A KR+
Sbjct: 238 KLVETCLLATCPAEGVALDPFMGSGTVGVVARKLGRHYLGVDQSAEYCEMARKRL 292


>gi|222053688|ref|YP_002536050.1| DNA methylase N-4/N-6 domain protein [Geobacter sp. FRC-32]
 gi|221562977|gb|ACM18949.1| DNA methylase N-4/N-6 domain protein [Geobacter sp. FRC-32]
          Length = 300

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 132/319 (41%), Gaps = 70/319 (21%)

Query: 1   MSQKNSLAINENQNSI-FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLY 58
           M    ++   +NQ +I +     I+ G+    L +LP K        PPY  L+      
Sbjct: 1   MHMIEAVETIQNQPAIDYNVPVNIVTGDVRQRLSELPEKMFRCCVTSPPYWGLR------ 54

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV-IGSYHN------- 110
             D+   D +        + E Y +   A     RRVL  +GT W+ IG  +        
Sbjct: 55  --DYGAEDQIGSE----MTVEEYISDLTAVFREVRRVLADDGTFWLNIGDSYTSGNRTWR 108

Query: 111 -----------------------------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                                         +++   LQ   +++ +DI+W K N  P   
Sbjct: 109 DPDKKNPARGMTYRAPTPEGLKPKDLIGIPWKLAFALQLDGWYLRSDIIWNKPNCQPESV 168

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM----RSDWLIPICSGSERLRN 197
             R   +HE +   +   K++ Y +N++A++   +  +     R+ W I     SE    
Sbjct: 169 KDRPTRSHEYVFLLT---KSEKYFYNWEAVREPAKTTKHYRSKRTVWDINTEPFSE---- 221

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
                 H    P  L+   L++ ++PGD ILDPFFGSGT G V  +L R  +G+E+K +Y
Sbjct: 222 -----AHFAVFPPGLVEPCLMAGSEPGDFILDPFFGSGTVGVVCLRLGRKCVGVELKPEY 276

Query: 258 IDIATKRIASVQPLGNIEL 276
           ++IA KR+   QP  N+ L
Sbjct: 277 VEIAKKRL---QPEANLFL 292


>gi|209527763|ref|ZP_03276257.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
 gi|209491796|gb|EDZ92157.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
          Length = 397

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 131/281 (46%), Gaps = 50/281 (17%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           + +G+ ++++      S+DLI+ DPP+  Q   +L   D     +  D W   SS + Y 
Sbjct: 5   VYQGDCLNIISTWEKDSIDLIYLDPPFFSQKTHKLTTRDSRKEFSFQDLW---SSHQEYG 61

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVW---RKSNPM 137
            F    L    R+L P+G+++V    H    I  +L ++       ++I+W   R SN  
Sbjct: 62  NFIYQRLQEMWRILSPSGSIFVHCDRHASHLIRLLLDDVFSPQMFRSEIIWHYKRWSNSQ 121

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNY------------DALKAANEDVQMRSDW- 184
                +    AH+T+ + +   K+  YTFN+              L+    D   +S + 
Sbjct: 122 -----KALLPAHQTIFYYT---KSDDYTFNFIYGEYSETTNVDQILQRRKRDEYGKSIYD 173

Query: 185 ------LIPICSGSER------------LRNKDGEKL-HPTQKPEALLSRILVSSTKPGD 225
                 +IP  SG ++            L  K  E++ +PTQKP  LL +I+  +T  GD
Sbjct: 174 KDLDGNIIP--SGGKKGVPLSDVWEIPYLNPKAKERVGYPTQKPLLLLEQIIKIATNEGD 231

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           +ILDPF GSGT+   A  L R+ +GI++  D +++  KR++
Sbjct: 232 LILDPFCGSGTTLVAASLLGRNSVGIDISTDAVELTKKRLS 272


>gi|150377536|ref|YP_001314131.1| site-specific DNA-methyltransferase (adenine-specific)
           [Sinorhizobium medicae WSM419]
 gi|150032083|gb|ABR64198.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Sinorhizobium medicae WSM419]
          Length = 707

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 149/324 (45%), Gaps = 69/324 (21%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKL---PAKS-------VDLIFADPPYN- 50
           +Q++  + +     +  W +K+I G++  +L  L   P +        + LI+ DPP++ 
Sbjct: 74  AQQDLFSTDSRGRQLQGWNNKLIWGDNKLILSSLKNGPLRQEIERHGGLKLIYIDPPFDV 133

Query: 51  -------LQLNGQLYRPDHSLVDAVT--DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
                  +++    +    ++++ +   D+W + +  +++ A     L+ CR +L   G+
Sbjct: 134 GADFSMDIEIGDDTFTKKPNILEEIAYRDTWGRGA--DSFIAMIYERLILCRDLLADEGS 191

Query: 102 LWVIGSYHNIFRIGTMLQNL---NFWILNDIVWRKSNPMPNFRG-RRFQNAHETLIWASP 157
           ++V   +   + I +++  +   NF+  N+I+W   N +    G + F   H+ L+  S 
Sbjct: 192 IFVHCDWRVNWAIRSVMNEIFGANFF-RNEIIWHYENKLGTGWGAKTFDTRHDVLLRFS- 249

Query: 158 SPKAKGYTFNYDALKAANEDVQ------------MRSD------------------WLIP 187
             K K Y  N  A K   E +Q            +R+D                  W IP
Sbjct: 250 --KGKKYVHNEIAEKVKVEKMQPVTKKVEGERIWLRNDDGSLMYAEGAKERPVGDVWTIP 307

Query: 188 ICS--GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           I +   +ERL        +PTQKPE L+ RI++S +  GD+I D F GSGT+ AVA+KL 
Sbjct: 308 IINPVATERLN-------YPTQKPEKLIERIILSGSNEGDLIADFFVGSGTTAAVAEKLG 360

Query: 246 RSFIGIEMKQDYIDIATKRIASVQ 269
           R +I  ++ +  +    KR+  VQ
Sbjct: 361 RKWIVSDLGKFAVHTTRKRMIGVQ 384


>gi|159028859|emb|CAO90664.1| nmeSIM [Microcystis aeruginosa PCC 7806]
          Length = 349

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 115/268 (42%), Gaps = 47/268 (17%)

Query: 23  IIKGNSISVLEKLPAKSV--DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + +G++   L KL    +  DL    PPYN                 +   +++  S   
Sbjct: 87  LYQGDATDFLSKLSHSDIKIDLTVTSPPYN-----------------IGKEYERVLSIND 129

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML-------QNLNFWILNDIVWRK 133
           Y  +   WL    ++ + NG  W+   Y  +   G  +           F++L +IVW+ 
Sbjct: 130 YVDWCANWLGQIYQITQDNGAFWLNVGYLEVPEKGLCVPIPYLLWDKSPFYLLQEIVWKY 189

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN-------EDVQMRSD--- 183
              +      R    +E   W       + YTFN D ++  N       ++ + R +   
Sbjct: 190 GAGVST--KNRLSPRNEK--WLFYLKNCQEYTFNLDNIRDPNVKYPNQKKNGKYRCNPLG 245

Query: 184 ------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                 W +P  +  E+  +K+    HP Q P A++ RI+ +S+ P +IILDPF GS ++
Sbjct: 246 KNPSDVWEVPKVTTGEKRSSKE-RTGHPAQFPLAIVERIIQASSNPVEIILDPFAGSCST 304

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           G  A  L R F+G E++QDY +IA +R 
Sbjct: 305 GIAALGLGRIFVGFEIRQDYCEIAAERF 332


>gi|256367550|ref|YP_003108111.1| hypothetical protein YcdB [Escherichia coli]
 gi|228480805|gb|ACQ42131.1| hypothetical protein YcdB [Escherichia coli]
          Length = 227

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 108/254 (42%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +   G   R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRG---RQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R  +  +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P  +G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPALPQKPLPDVQGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|190410582|ref|YP_001965996.1| probable DNA modification methyltransferase M.XmaI [Xanthomonas
           axonopodis pv. glycines]
 gi|2995642|gb|AAC08981.1| DNA modification methyltransferase M.XmaI [Xanthomonas campestris]
 gi|59938882|gb|AAX12207.1| probable DNA modification methyltransferase M.XmaI [Xanthomonas
           axonopodis pv. glycines]
          Length = 300

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 125/278 (44%), Gaps = 53/278 (19%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY--------NLQLNGQLYRPD--HSLV------- 65
           + +G++++VL +LP+ SV  +   PPY          Q+  ++  P   H LV       
Sbjct: 28  LFEGDALTVLRRLPSGSVRCVVTSPPYWGLRDYGIEEQIGLEVTMPQFLHRLVAIFAEVK 87

Query: 66  DAVTDS---W----DKFSS----FEAYDAFTRAWLLACRR----VLKPNGTLWVIGSYHN 110
             +TD    W    D ++S    + A D    A  +  R      LKP   + +      
Sbjct: 88  RVLTDDGTLWLNIGDGYTSGNRGYRAPDKKNPARAMDVRPDTPVGLKPKDLMGIP----- 142

Query: 111 IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
            +R+   LQ+  +++ +DIVW K N MP     R   +HE L   +   K++ Y +++ A
Sbjct: 143 -WRLAFALQDDGWYLRSDIVWNKPNAMPESVKDRPARSHEFLFMFT---KSEKYFYDWQA 198

Query: 171 LKAANEDVQMR---SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
            +   +   +R   S W          +  K     H    P  L+   + +ST+PGD +
Sbjct: 199 AREPADGGGLRNRRSVW---------NVNTKPFAGAHFATFPPELIRPCIHASTEPGDYV 249

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           LDPFFGSGT G V +   R ++GIE+  +Y+ +A  R+
Sbjct: 250 LDPFFGSGTVGLVCQDENRQYVGIELNPEYVTLAADRL 287


>gi|170729631|ref|YP_001775064.1| site-specific DNA-methyltransferase [Xylella fastidiosa M12]
 gi|167964424|gb|ACA11434.1| site-specific DNA-methyltransferase [Xylella fastidiosa M12]
          Length = 243

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 114/256 (44%), Gaps = 36/256 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDAVT-----DSWD 73
           ++ +G+++ +L  + + +VD +  DPPY    ++++ +        +++ T     D   
Sbjct: 10  RLHEGDALRLLCDIDSANVDAVITDPPYCSGAMRMSDRFKPTKRKYINSTTKHIAPDFDC 69

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
            F     + A++  WL  CRRV +P G L V   +  +  +   +Q+  +     +VW K
Sbjct: 70  DFRDHRGFLAWSSQWLSECRRVTRPGGVLLVFTDWRMLPTLTDAVQSAGWAWQGIVVWDK 129

Query: 134 SNPMPNFRGRRFQNAHETLIWASP---SPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           + P    +  RF++  E ++WAS    +PKA   T                     P+  
Sbjct: 130 T-PACRPQLVRFRSQAEFIVWASCGLMNPKAHTVT---------------------PV-- 165

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           G         EK H   KP AL+   L+    P   ILDPF GSGT+G  A +    FIG
Sbjct: 166 GVFTTGTAPREKRHQVGKPLALMEH-LIKIVPPTSTILDPFAGSGTTGVAALRAGHRFIG 224

Query: 251 IEMKQDYIDIATKRIA 266
           +E+   Y D+  +R+A
Sbjct: 225 MELSPWYCDVTKQRLA 240


>gi|291296771|ref|YP_003508169.1| DNA methylase N-4/N-6 domain-containing protein [Meiothermus ruber
           DSM 1279]
 gi|290471730|gb|ADD29149.1| DNA methylase N-4/N-6 domain protein [Meiothermus ruber DSM 1279]
          Length = 313

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 117/271 (43%), Gaps = 55/271 (20%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I  G+   +L+++P  S+ L+   PPYN+   G+ Y    +L              +AY 
Sbjct: 23  IYPGDCTELLKQIPDASISLVITSPPYNI---GKPYESRKAL--------------DAYL 65

Query: 83  AFTRAWLLACRRVLKPNGTL-WVIGSYHN---IFRIGTML----QNLNFWILNDIVWRKS 134
           A+    +    RVLKP G+L W +G+Y +   I  +  +L     NL   + N IVW   
Sbjct: 66  AWQEGVVKESVRVLKPTGSLVWQVGNYVDNGEILPLDMLLFPIFTNLGLKLRNRIVWAFE 125

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR------------- 181
           + +     RRF   +E  +W +   K   YTFN D+++   +    +             
Sbjct: 126 HGL--HAKRRFSGRYEVALWFT---KTDEYTFNLDSVRVPQKYPNKKHFKGPKKGELSGN 180

Query: 182 -------SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
                    W+ P         N   +  HP Q P  L+ R +++ T+  D +LDPF GS
Sbjct: 181 PLGKNPGDVWVFPNVKA-----NHVEKTGHPAQYPVELVERFVLALTEEDDWVLDPFGGS 235

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           GT+   A   RR     E+  DY++IA +R+
Sbjct: 236 GTTLIAALMHRRRGAMAEIIPDYVEIAQQRL 266


>gi|261379137|ref|ZP_05983710.1| DNA modification methylase [Neisseria cinerea ATCC 14685]
 gi|269144409|gb|EEZ70827.1| DNA modification methylase [Neisseria cinerea ATCC 14685]
 gi|325564263|gb|ADZ31429.1| M.NciI methyltransferase/endonuclease fusion protein [Neisseria
           cinerea]
          Length = 513

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 125/267 (46%), Gaps = 43/267 (16%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ-------LNGQLYRPDHSLVDAVTDSWD 73
           +K I G+S+  ++KLP+KS+DLIF  PPYNL+        +G+  +  ++ +    D+ D
Sbjct: 13  NKFICGDSLQKMKKLPSKSIDLIFTSPPYNLKNSTGNGMKDGRGGKWSNARLIEGYDNHD 72

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT-MLQNL-----NFWILN 127
                + Y  + R  L    R++K +G ++    Y++ +R+   +LQ+       F +  
Sbjct: 73  DCMPHDEYVKWQRKCLKEMLRLIKDDGAIF----YNHKWRVQNGLLQDRADIVKGFPVRQ 128

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
            I+W++   + NF    F   +E +      P        +   K AN            
Sbjct: 129 IIIWKRKGGI-NFNPGYFLPTYEVIYLICKKP--------FKLAKGANS--------FGD 171

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           I   ++ + N+     HP   P  L  R++ S+     I+LDPF GSGT+   A  L R 
Sbjct: 172 IWEFTQDMNNE-----HPAPFPLELAKRVVQSTN--AQIVLDPFMGSGTTAIAAALLDRK 224

Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNI 274
           FIGIE+  +Y+ I+ KR  ++   GN+
Sbjct: 225 FIGIELSSEYVKISKKRYNNI--FGNL 249


>gi|315612933|ref|ZP_07887844.1| adenine specific DNA methylase [Streptococcus sanguinis ATCC 49296]
 gi|315315043|gb|EFU63084.1| adenine specific DNA methylase [Streptococcus sanguinis ATCC 49296]
          Length = 598

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 105/413 (25%), Positives = 179/413 (43%), Gaps = 95/413 (23%)

Query: 19  WKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           W +KI  G+++ V+  +  +    +DLI+ DPP++ + + +       +     DS    
Sbjct: 57  WINKIFWGDNLQVMSHMLKEYRGKIDLIYIDPPFDSKADYKKKIEIKGVGKTEADS---- 112

Query: 76  SSFEA-----------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--- 121
           SSFE            Y  F    L+  R +L  +GT+++   +H    +  ++  +   
Sbjct: 113 SSFEEKQYGDIWTNDEYLQFMYERLILLRELLSDSGTIFLHCDWHKSHHLRMLMDEVFSP 172

Query: 122 -NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN------------- 167
            NF  +++IVW   + + +   + F+  H+T++  S +  ++  TFN             
Sbjct: 173 NNF--IDEIVWGYED-IGSRAVKYFKRKHDTILMYSKTA-SEDRTFNILRKRLSESTIKR 228

Query: 168 ------------YDALKAANEDVQMR---------------------SDWLIPICSGSER 194
                       Y  LK  N  V  +                     SDW + I +    
Sbjct: 229 YQSYFDDDGKISYQKLKDTNPGVFAKLKGIPEDLSETWLDINNGAPLSDWWVDISA---- 284

Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           L+N   E   +PTQKPEALL RI+++S+ PGD++ D F GSGT+ AVA +L R FIG ++
Sbjct: 285 LKNGFAEATGYPTQKPEALLERIIMASSNPGDLVFDCFMGSGTTQAVAMRLGRRFIGSDI 344

Query: 254 KQDYIDIATKRIASVQP-------LGNIELTVLTGKR--TEPRVAFNLLVERGLIQPGQI 304
               +  ATKR+ ++           N+E+  +        P  A NL+VE   IQP + 
Sbjct: 345 NLGAVQTATKRLINLAKEIQLDDIYDNLEVYNVNNYDFFRNPIEAKNLIVEALEIQPFK- 403

Query: 305 LTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGE 357
               QGNI      DG ++   ++  ++R+  K    E      +  +EK+ E
Sbjct: 404 ----QGNIWDGEL-DGRMV---KIMPVNRIATKADLEELKANLPYKTYEKIKE 448


>gi|225163822|ref|ZP_03726119.1| Site-specific DNA-methyltransferase (adenine-specific) [Opitutaceae
           bacterium TAV2]
 gi|224801580|gb|EEG19879.1| Site-specific DNA-methyltransferase (adenine-specific) [Opitutaceae
           bacterium TAV2]
          Length = 641

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 99/420 (23%), Positives = 173/420 (41%), Gaps = 88/420 (20%)

Query: 6   SLAINENQNS-IFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRP- 60
           +L + E ++S + ++++++I G++  VL  L A+    VDLI+ DPP+++  +  +  P 
Sbjct: 62  ALDLFEKKSSRLDDFRNRLIWGDNKLVLASLLAEFKGKVDLIYIDPPFDVGADFTMSLPV 121

Query: 61  ---------DHSLVDAVT--DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
                    + S ++AV   D W K +    +  + R  L+  + +L   G+++V    H
Sbjct: 122 GDGKETLEKEQSTIEAVAYRDMWGKGTDSYLHMMYERLSLM--KELLSERGSIYV----H 175

Query: 110 NIFRIGTMLQNLNFWIL------NDIVWRKSNPMPNFRGRRFQNAHETLIWASP------ 157
              R+ ++++ +   I       N ++W   N        +F + H+ L + +       
Sbjct: 176 CDHRVDSLVRRVMDEIFSPERFRNQMIWWYRNSGMKAASDKFHHKHDVLYFYAKNSVFTF 235

Query: 158 -----------SPKAKGYTFN---------YDA----LKAANEDVQMRSDWLIPICSGSE 193
                      S K + Y F+         YD     +     D+   S W +PI  G  
Sbjct: 236 NGYREPLKDGDSGKRRAYKFDSKLKKPLPVYDKEGKPVYYQVGDILAGSVWDVPILQGG- 294

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
                D    +PTQKPEALL RI+ +S+  GD++ D F GSGT+GAVA++L R +I  ++
Sbjct: 295 -----DENIGYPTQKPEALLERIIKASSNEGDLVADFFCGSGTTGAVAERLGRRWILADL 349

Query: 254 KQDYIDIATKRIASVQP----------------LGNIEL------TVLTGKRTEPRVAFN 291
            +  I    KR+  +Q                 LG  E        +L       RV   
Sbjct: 350 GRFAIHTTRKRLIQLQSELHSGEKPYRAFDVYNLGRYERQWWQKKQLLGADEEHRRVVLQ 409

Query: 292 LLVERGLIQ-PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSE-TCNGWNF 349
                 L Q P  +L  ++G     V    ++ +  EL  + +        E  C  W F
Sbjct: 410 FHGASALEQPPSPLLHGSKGGAVCHVDGIDSIFTRDELREVAKATVGTGAKELHCLAWEF 469


>gi|188586728|ref|YP_001918273.1| DNA methylase N-4/N-6 domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351415|gb|ACB85685.1| DNA methylase N-4/N-6 domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 395

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 124/270 (45%), Gaps = 50/270 (18%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           E++++II  +S  +L K+P   +DL+F  PPYN  L    ++      DA+  +W  +  
Sbjct: 149 EYENQIICADSEQLLSKMPENCIDLVFTSPPYNFGLEYDNHQ------DAM--NWSIY-- 198

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILN------DI 129
              +D   R  L  C RV K  G   +I +   +F     + +   NF+I        +I
Sbjct: 199 ---FDKLYRI-LDECIRVTKYGGR--IIVNVQPLFSDYIPIHHFISNFFIKKKLIWKAEI 252

Query: 130 VWRKSNPMPNFRGRRFQNAHETL--IWASPSPKAKGYTFNYDAL----------KAANED 177
           +W K+N           N   T    W SPS     YT+ +  +          K  N D
Sbjct: 253 LWEKNN----------YNCKYTAWGSWKSPSNPYMKYTWEFLEVFCKGTMKKQGKKENID 302

Query: 178 VQMRS--DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
           +      +W+    S +     K+ +  HP+  PE L  R++   +  GDIILDPF GSG
Sbjct: 303 ISAEEFKEWVYGKWSIAPEKNMKNYK--HPSMFPEELARRVMKLFSYQGDIILDPFVGSG 360

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T+  VA +  R F+GI++ ++Y ++A KRI
Sbjct: 361 TTPVVAHQNNRRFLGIDISREYCELARKRI 390


>gi|319900714|ref|YP_004160442.1| DNA methylase N-4/N-6 domain protein [Bacteroides helcogenes P
           36-108]
 gi|319415745|gb|ADV42856.1| DNA methylase N-4/N-6 domain protein [Bacteroides helcogenes P
           36-108]
          Length = 277

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 109/239 (45%), Gaps = 35/239 (14%)

Query: 47  PPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
           PPYN+    +   P    +D +TD              T ++LL    +  PN    V  
Sbjct: 46  PPYNIGKEYETVMPIGDYIDWLTDI---IKLIHKLTVPTGSFLLNVGYLNFPNKGKAVPI 102

Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA-HETLIWASPSPKAKGYT 165
            Y        +   + F++  +IVW   N       +RF +  +E ++W   +   K YT
Sbjct: 103 PY-------LLWDKIPFFLQQEIVW---NYGAGVSAKRFLSPRNEKILWYIKN--EKNYT 150

Query: 166 FNYDALKAAN-------EDVQMRSD---------WLIP-ICSGSERLRNKDGEKLHPTQK 208
           FN D ++  +       ++ ++R +         W I  + SG+ R   +     HP Q 
Sbjct: 151 FNLDEIRDPDVKYPNQKKNGKLRCNSIGKNPSDVWQIAKVTSGTNRASEE--RTAHPAQF 208

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           PE L+ R+++  T   DIILDPF GSGT GAVA +L R FIG E+  DY +IA KRI +
Sbjct: 209 PEDLIKRLILGFTNKNDIILDPFMGSGTVGAVAIELGRKFIGFEINSDYCEIAPKRIQT 267


>gi|326783015|ref|YP_004323412.1| DNA adenine methylase [Prochlorococcus phage P-HM2]
 gi|310005433|gb|ADO99821.1| DNA adenine methylase [Prochlorococcus phage P-HM2]
          Length = 309

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 86/180 (47%), Gaps = 35/180 (19%)

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
           L+   +++  DI+W K NPMP     R   +HE L   S   K K Y ++ +A+K     
Sbjct: 134 LRADGWYLRQDIIWHKPNPMPESVKDRCTKSHEYLFLLS---KNKKYYYDNEAIKEP--- 187

Query: 178 VQMRSDW----------------LIP---ICSGSER--------LRNKDGEKLHPTQKPE 210
             ++ DW                L P   +    ER        + NK  +  H    P 
Sbjct: 188 --VKQDWGTRDRTSGKYHNPGTGLQPHSGLSKSYERKNKRDVWTITNKPYKGAHFAVFPP 245

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
            L+   +++ ++ GDI+LDPF GSGT+G VAKK  RS+IG E+ +DY  + T RI S+ P
Sbjct: 246 DLIEPCILAGSEQGDIVLDPFMGSGTTGMVAKKNFRSYIGCELHKDYASLQTDRIDSIPP 305


>gi|284041579|ref|YP_003391919.1| DNA methylase N-4/N-6 domain protein [Conexibacter woesei DSM
           14684]
 gi|283945800|gb|ADB48544.1| DNA methylase N-4/N-6 domain protein [Conexibacter woesei DSM
           14684]
          Length = 287

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 126/286 (44%), Gaps = 52/286 (18%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ--------------------LNGQLYR 59
           +D ++ G+++ VL  LP  + D+I+ DPP+N                        G+ YR
Sbjct: 18  EDLVVHGDNLDVLPLLPDGAFDMIYIDPPFNTGKAQRRRTLVFEPDVEGDRTGFGGRRYR 77

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
                  A  D++D +  F A        L   RR+L  +GTL+    Y        +L 
Sbjct: 78  SQLLQALAYGDTFDDYLGFVA------PRLEHARRLLAEHGTLYFHIDYREAHYCKLLLD 131

Query: 120 NL--NFWILNDIVWRKSNPMPNFRGR---RFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
            +      LN+I+W       ++ G+   R+   H+T++    +P A     ++DA +A 
Sbjct: 132 EIFGRDCFLNEIIWAY-----DYGGKPRSRWPAKHDTILVYVRTPGAH----HFDA-EAV 181

Query: 175 NEDVQMRSDWLIP--ICSGSERL---------RNKDGEKLHPTQKPEALLSRILVSSTKP 223
           + +  M    + P  +  G              N   +  +PTQKP  ++ R++ +S++P
Sbjct: 182 DREPYMAPGLVTPEKVARGKRPTDVWWHTIVPTNGYEKTGYPTQKPAGVVRRMVAASSRP 241

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           G   LD F GSGT GAVA  L R ++ ++   + ID+  KR+ + +
Sbjct: 242 GGWCLDFFAGSGTLGAVAAGLGRRYVLVDSHAEAIDVMRKRLGTAE 287


>gi|170730599|ref|YP_001776032.1| site-specific DNA-methyltransferase [Xylella fastidiosa M12]
 gi|167965392|gb|ACA12402.1| site-specific DNA-methyltransferase [Xylella fastidiosa M12]
          Length = 243

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 112/253 (44%), Gaps = 36/253 (14%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDAVT-----DSWDKFS 76
           +G+++ +L  + + +VD +  DPPY    ++++ +        +++ T     D    F 
Sbjct: 13  EGDALRLLCDIDSANVDAVITDPPYCSGAMRMSDRFKPTKRKYINSTTKHIAPDFDCDFR 72

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
               + A++  WL  CRRV +P G L V   +  +  +   +Q+  +     +VW K+ P
Sbjct: 73  DHRGFLAWSSQWLSECRRVTRPGGVLLVFTDWRMLPTLTDAVQSAGWAWQGIVVWDKT-P 131

Query: 137 MPNFRGRRFQNAHETLIWASP---SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
               +  RF++  E ++WAS    +PKA   T                     P+  G  
Sbjct: 132 ACRPQLVRFRSQAEFIVWASCGLMNPKAHTVT---------------------PV--GVF 168

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
                  EK H   KP AL+   L+    P   ILDPF GSGT+G  A +    FIG+E+
Sbjct: 169 TTGTAPREKRHQVGKPLALMEH-LIKIVPPTSTILDPFAGSGTTGVAALRAGHRFIGMEL 227

Query: 254 KQDYIDIATKRIA 266
              Y D+  +R+A
Sbjct: 228 SPWYCDVTKQRLA 240


>gi|257457835|ref|ZP_05622994.1| DNA methylase [Treponema vincentii ATCC 35580]
 gi|257444548|gb|EEV19632.1| DNA methylase [Treponema vincentii ATCC 35580]
          Length = 283

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 117/265 (44%), Gaps = 47/265 (17%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           + I+ L+ LP   +DL+   PPYN+   G+ Y              +K    E Y  ++ 
Sbjct: 27  DCIAALKILPRNYIDLVLTSPPYNI---GKEY--------------EKVLPIEDYIDWSS 69

Query: 87  AWLLACRRVLKPNGTLWVIGSY-------HNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           +WL     +LK NG  W    Y         +  +  +   +  +++ +IVW     +  
Sbjct: 70  SWLNEIPLILKENGAFWYNLGYVPFKDSARALPLVYLLWDKVKMYLMQEIVWNYGAGVAC 129

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN-------EDVQMRSD--------- 183
              +     +E  +W   +     YTFN DA++  +       ++ ++R +         
Sbjct: 130 --KKTLSPRNEKWLWYVNN--KDDYTFNLDAIRDPDVKYPNSKKNGKLRCNTLGKNPSDV 185

Query: 184 WLIP-ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           W I  + SG  R  + +    HP Q P  L+ RI +  +   DI+LDPF GSGT+   A 
Sbjct: 186 WQIAKVTSGFNR--SSEERTNHPAQFPLDLIDRITLGFSNENDILLDPFMGSGTTAISAL 243

Query: 243 KLRRSFIGIEMKQDYIDIATKRIAS 267
           K RR+ IG E+++DY ++  KRI S
Sbjct: 244 KNRRNVIGFEIREDYCELQAKRIDS 268


>gi|28199209|ref|NP_779523.1| site-specific DNA-methyltransferase [Xylella fastidiosa Temecula1]
 gi|182681938|ref|YP_001830098.1| DNA methylase N-4/N-6 domain-containing protein [Xylella fastidiosa
           M23]
 gi|28057315|gb|AAO29172.1| site-specific DNA-methyltransferase [Xylella fastidiosa Temecula1]
 gi|182632048|gb|ACB92824.1| DNA methylase N-4/N-6 domain protein [Xylella fastidiosa M23]
 gi|307578197|gb|ADN62166.1| DNA methylase N-4/N-6 domain-containing protein [Xylella fastidiosa
           subsp. fastidiosa GB514]
          Length = 243

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 112/256 (43%), Gaps = 36/256 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY--NLQLNGQLYRPD-----HSLVDAVTDSWD- 73
           ++ +G+++ +L  + + SVD +  DPPY          ++P      ++    V   +D 
Sbjct: 10  RLHQGDALRLLCGIDSASVDAVITDPPYCSGAMRMADRFKPTKRKYINNGTKHVAPDFDC 69

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
            F     + A++  WL  CRRV +P G L V   +  +  +   +Q+  +     +VW K
Sbjct: 70  DFRDHRGFLAWSSQWLSECRRVTRPGGVLLVFTDWRMLPTLTDAVQSAGWAWQGIVVWDK 129

Query: 134 SNPMPNFRGRRFQNAHETLIWASP---SPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           + P    +  RF++  E ++WAS    +PKA   T                     P+  
Sbjct: 130 T-PACRPQLGRFRSQAEFIVWASCGLMNPKAHPVT---------------------PV-- 165

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           G         EK H   KP AL+   LV    P   +LDPF GSGT+G  A +    FIG
Sbjct: 166 GVFATGTAPREKRHQVGKPLALMEH-LVKIVPPASTVLDPFAGSGTTGVAALRAGHRFIG 224

Query: 251 IEMKQDYIDIATKRIA 266
           +E+   Y D+  +R+A
Sbjct: 225 MELSPWYCDVTKQRLA 240


>gi|308185151|ref|YP_003929284.1| adenine-specific DNA methylase [Helicobacter pylori SJM180]
 gi|308061071|gb|ADO02967.1| adenine-specific DNA methylase [Helicobacter pylori SJM180]
          Length = 754

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 119/282 (42%), Gaps = 59/282 (20%)

Query: 23  IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +IK  +   L  L     +++D I+ DPP+N          D + +D   DS        
Sbjct: 382 LIKSENYQALNSLKNRYKETIDCIYIDPPFNTG-------SDFAYIDKFQDS-------- 426

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW---ILNDIVWRKSNP 136
            + +     L      L P G+ ++    +N   +G ML N  F      N+I+W  SN 
Sbjct: 427 TWLSLMHNRLELAYDFLSPQGSFYLHLD-NNANYLGRMLLNDIFGKENFRNEIIWYYSNK 485

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV-----------QMRSD-- 183
           M N  G  F    ET++  S S K   Y F Y   +  +E V            MR+   
Sbjct: 486 MAN-SGNSFAKNTETILNYSKSEK---YIF-YRQKEPRSEPVLLSKREGRDGKNMRARDE 540

Query: 184 -----------------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
                            W IPI   +   R K+ E L  TQKPE LL RI+ +S+    I
Sbjct: 541 NGKVIYELSHERYVDTLWDIPIIGSTSTERVKNNENL--TQKPEKLLERIIQASSDENSI 598

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           ILD F GS T+ AVA KL+R +IGIEM + +  +   R+  V
Sbjct: 599 ILDFFAGSRTTCAVAHKLKRKYIGIEMGEHFDSVILPRLKKV 640


>gi|225849772|ref|YP_002730006.1| DNA methylase [Persephonella marina EX-H1]
 gi|225644906|gb|ACO03092.1| DNA methylase [Persephonella marina EX-H1]
          Length = 294

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 127/282 (45%), Gaps = 37/282 (13%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E+ DK+I G+++  L+K+P  S+DL    PPYN + + + +  D       TD+  + 
Sbjct: 2   VSEFIDKVICGDTLETLKKIPDNSIDLGITSPPYNKREDKKGWLVDKITYKGATDNLPE- 60

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI-FRIGTMLQNLNF-----WIL-ND 128
              E Y       L    R++KP G+ +     H I +  G M   +++     WI+  +
Sbjct: 61  ---EVYQETQIKVLNELYRIIKPGGSFFY---NHKIRWEKGIMFHPMDWLRKTKWIIRQE 114

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW-LIP 187
           I+W +     N RG RF    E + W       K    N    +  +    + S W L+P
Sbjct: 115 IIWDRMIAA-NLRGWRFWQVEERIYWL-----YKPIGNNKIGKELKSRHALLTSIWRLLP 168

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVS--STKPGDIILDPFFGSGTSGAVAKKLR 245
                      +    HP   P AL  RI+ S    + G +++DP+ GSGT+   AK L 
Sbjct: 169 -----------ENNNPHPAPFPIALPVRIIYSIFDEERGKLVIDPYCGSGTTLVAAKILG 217

Query: 246 RSFIGIEMKQDYIDIATKRIASVQ---PLGNIELTVLTGKRT 284
             ++GI++ Q+Y D A KR+ + Q   P    E++    K+T
Sbjct: 218 HHYLGIDISQEYTDYALKRLENYQFEIPKAQEEISKHVVKKT 259


>gi|299132505|ref|ZP_07025700.1| DNA methylase N-4/N-6 domain protein [Afipia sp. 1NLS2]
 gi|298592642|gb|EFI52842.1| DNA methylase N-4/N-6 domain protein [Afipia sp. 1NLS2]
          Length = 247

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 100/267 (37%), Gaps = 46/267 (17%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++ G+   ++   P    D+I ADPPY           D SL               A+D
Sbjct: 3   VLTGDCREIMP--PHGPFDMILADPPYG----------DTSL---------------AWD 35

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
                W+   R  L   G+LWV GS                 I  +IVW K N    F  
Sbjct: 36  RRVEGWIALAREALNLTGSLWVFGSLRCFMATADRFTEAGLRIAQEIVWEKQNGT-GFHN 94

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS-----------G 191
            RF+  HE  +   P+  A    +N            +R     P              G
Sbjct: 95  DRFKRVHELAVQFYPAETAWRDIYNDVQTTPDATARTVRRKQRPPHTGQIDAGHYVSHDG 154

Query: 192 SERL-------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
             RL       RN  G  +HPT+KP +LL  ++ +S   G ++ D F GSG++G   +  
Sbjct: 155 GPRLMRSVIYVRNCHGRAIHPTEKPSSLLEILIRTSCPEGGLVGDWFAGSGSAGEACRLS 214

Query: 245 RRSFIGIEMKQDYIDIATKRIASVQPL 271
            R ++G E+     + A  RIA+V P 
Sbjct: 215 GRRYLGCEIDAAMAERACARIAAVLPF 241


>gi|317133966|ref|YP_004089877.1| DNA methylase N-4/N-6 domain protein [Ruminococcus albus 7]
 gi|315450428|gb|ADU23991.1| DNA methylase N-4/N-6 domain protein [Ruminococcus albus 7]
          Length = 361

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 110/258 (42%), Gaps = 50/258 (19%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNL---------QLNGQLYRPDHSLVDAVTDSWDKFS 76
            ++ ++L KL  +S D+I  DPPY +            G L + D  + D     +D+  
Sbjct: 135 ADAKTILNKLKTESFDMILTDPPYRVISGGTGGKNAPKGMLSKNDGKIFDNNDIQFDE-- 192

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
                      ++  C RVLKP+   +   ++ N+ ++   +Q   F + N +VW K+N 
Sbjct: 193 -----------YIPECYRVLKPDRQAYFFTNFLNLQQLIEAVQRSGFKVHNLLVWLKNNA 241

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS--ER 194
            PN   R +    E +++     KAK                       I  C      +
Sbjct: 242 TPN---RWYMKNCENVLFCYKG-KAKA----------------------ISNCGSKTVHQ 275

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
             N  G KLH T+KP  LL   + +ST+ G+ ILDPF GSG++ A +  L R     E+ 
Sbjct: 276 FDNIKGPKLHETEKPVELLKMYIENSTEEGEWILDPFAGSGSTMAASLLLNRKVFTCEID 335

Query: 255 QDYIDIATKRIASVQPLG 272
           + Y+++   R  S+   G
Sbjct: 336 KKYLNVIKTRAISILKSG 353


>gi|257792343|ref|YP_003182949.1| DNA methylase N-4/N-6 domain-containing protein [Eggerthella lenta
           DSM 2243]
 gi|257476240|gb|ACV56560.1| DNA methylase N-4/N-6 domain protein [Eggerthella lenta DSM 2243]
          Length = 265

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 105/252 (41%), Gaps = 38/252 (15%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS-----------LVDAVTDSWDKF 75
           ++++ L +L + S D +  DPPY+   +G ++R D +           ++D   + +   
Sbjct: 13  DALAGLRELESDSCDALLTDPPYS---SGGMFRGDRAGKTSKKYQSTGVIDVKPEFYGDN 69

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
               ++  +   WL  C RVLK      V   +  I      LQ   F       W K  
Sbjct: 70  RDQLSFMHWCAMWLSECHRVLKQGSVAMVFTDWRQIAATVNALQMGGFIYRGVFSWIKPA 129

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
             P  +GR   NA E  +W S  P                    M SD    I    E+ 
Sbjct: 130 ARPQ-KGRFTSNA-EYCVWGSKGP--------------------MPSDGCC-IKGYFEKS 166

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                +++H TQKP  LL  +L   T  G  +LDPF GSG++   A +  RSFIG EM +
Sbjct: 167 PEPTAKRIHSTQKPVELLEHLL-KITPEGCTVLDPFMGSGSTAIAAIRTGRSFIGFEMSE 225

Query: 256 DYIDIATKRIAS 267
           +Y  +A  R+++
Sbjct: 226 EYCHLANGRVSA 237


>gi|261837490|gb|ACX97256.1| type III restriction enzyme M protein [Helicobacter pylori 51]
          Length = 619

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 122/284 (42%), Gaps = 63/284 (22%)

Query: 23  IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +IK  +   L  L     +++D I+ DPP+N          D + +D   DS        
Sbjct: 247 LIKSENYQALNSLKNRYKETIDCIYIDPPFNTG-------SDFAYIDKFQDS-------- 291

Query: 80  AYDAFTRAWL-LACRRVLKPNGTLWVIGSYH-----NIFRIGTMLQNLNFW---ILNDIV 130
                   WL L   R+      L   GS++     N   +G ML N  F      N+I+
Sbjct: 292 -------TWLSLMHNRLELAYDFLSSQGSFYLHLDNNANYLGRMLLNDIFGKENFRNEII 344

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPK----------------AKGYTFNYDALKAA 174
           W  SN M N  G  F    ET++  S S K                +K    +   ++A 
Sbjct: 345 WYYSNKMAN-SGNSFAKNTETILNYSKSEKYIFYRQKEPRSEPVLLSKREGRDGKNMRAR 403

Query: 175 NEDVQMRSD----------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
           +E+ ++  +          W IPI   +   R K+ E L  TQKPE LL RI+ +S+   
Sbjct: 404 DENGKVIYELSHERYVDTLWDIPIIGSTSTERVKNNENL--TQKPEKLLKRIIQASSDEN 461

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            I+LD F GSGT+ AVA KL+R +IGIEM + +  +   R+  V
Sbjct: 462 SIVLDFFAGSGTTCAVAHKLKRKYIGIEMGEHFERVILPRLKKV 505


>gi|257459285|ref|ZP_05624399.1| DNA methylase [Campylobacter gracilis RM3268]
 gi|257443298|gb|EEV18427.1| DNA methylase [Campylobacter gracilis RM3268]
          Length = 222

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 108/251 (43%), Gaps = 46/251 (18%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY--RP--DHSLVDAVTDSWDKFS 76
           +KI   + +  +  +P   VDL+  DPPY +   G     RP  ++  +  ++  +D  +
Sbjct: 4   NKIYNTDCLEFMRSMPDSCVDLVVTDPPYEIHTKGGGLGKRPVYENGALSKISQGFDAEA 63

Query: 77  SFEAYDAFTRAW--LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
           + E      +     + C    KP    W      NI                ++ W K 
Sbjct: 64  TLEQIARICKKINIFIFCSTKQKPRIMNWGYERDCNI---------------AELAWYKP 108

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N  P F    F++  E +I+                ++     ++  S      C     
Sbjct: 109 NAAP-FTNNTFKSDLENIIY----------------IREKGVKIKGISRLFTHNCG---- 147

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            ++K G   HPT+KP  ++ +++++++  GD+I DPF GSGT+ A  K+L R+FIG E++
Sbjct: 148 -KSKYG---HPTEKPLEIIEKLILTASNEGDLIFDPFMGSGTTAAACKELNRNFIGCEIE 203

Query: 255 QDYIDIATKRI 265
             Y +IA KR+
Sbjct: 204 SKYCEIAEKRL 214


>gi|119357320|ref|YP_911964.1| DNA methylase N-4/N-6 domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354669|gb|ABL65540.1| DNA methylase N-4/N-6 domain protein [Chlorobium phaeobacteroides
           DSM 266]
          Length = 284

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 80/277 (28%), Positives = 117/277 (42%), Gaps = 56/277 (20%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G+   +LE LP +SVDLIF  PPY  Q   Q Y   H                + Y A+ 
Sbjct: 10  GDCREILENLPDESVDLIFTSPPYADQ-RKQTYGGFHP---------------DDYVAWF 53

Query: 86  RAWLLACRRVLKPNGTLW------VIGSYHNIFRIGTMLQ--NLNFWI-LNDIVWRKSNP 136
                   RVLKP GT        V+    + + +  +L+      W+   + +W K N 
Sbjct: 54  LPISFQLMRVLKPTGTFVLNIKEKVLNGERSTYVMELILEMRKQQGWLWTEEFIWHKKNC 113

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA------------LKAANEDVQMR--- 181
            P     RF+++ E LI  +   K K +  N DA            LK  +E  +MR   
Sbjct: 114 YPGKWPNRFRDSWERLIQFN---KRKQFYMNQDAVMVPMGDWSRTRLKNLSETDKMRDES 170

Query: 182 ----------SDWL---IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
                     S+WL   +   +    L  +   K H    PE L    +   TK GD +L
Sbjct: 171 KVGSGFGKNISNWLQRDMAYPTNVLHLATECNNKNHSAAFPEGLPEWFIKLFTKEGDTVL 230

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           DPF GSGT+ AVAK+++R+ IGIE+  +Y ++    +
Sbjct: 231 DPFMGSGTTNAVAKRMKRNSIGIEIMTEYYEMVKNEL 267


>gi|166365170|ref|YP_001657443.1| putative adenine-specific DNA-methyltransferase [Microcystis
           aeruginosa NIES-843]
 gi|166087543|dbj|BAG02251.1| putative adenine-specific DNA-methyltransferase [Microcystis
           aeruginosa NIES-843]
          Length = 349

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 115/268 (42%), Gaps = 47/268 (17%)

Query: 23  IIKGNSISVLEKLPAKSV--DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + +G++   L KL    +  DL    PPYN                 +   +++  S   
Sbjct: 87  LYQGDATDFLSKLSHSDIKIDLTVTSPPYN-----------------IGKEYERVLSIND 129

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML-------QNLNFWILNDIVWRK 133
           Y  +   WL    ++ + NG LW+   Y  +   G  +           F++L +IVW+ 
Sbjct: 130 YVDWCANWLRQIYQITQDNGALWLNVGYLEVPEKGLCVPIPYLLWDKSPFYLLQEIVWKY 189

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN-------EDVQMRSD--- 183
              +      R    +E   W       + YTFN D ++  N       ++ + R +   
Sbjct: 190 GAGVST--KNRLSPRNEK--WLFYLKNCQEYTFNLDNIRDPNVKYPNQKKNGKYRCNPLG 245

Query: 184 ------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                 W +P  +  E+  +K+    HP Q P A++ RI+ +S+ P +IILDPF GS ++
Sbjct: 246 KNPSDVWEVPKVTTGEKRSSKE-RTGHPAQFPLAIVERIIQASSNPVEIILDPFAGSCST 304

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           G  A  L R F+G E++ DY +IA +R 
Sbjct: 305 GIAALGLGRIFVGFEIRPDYCEIAAERF 332


>gi|145301515|ref|YP_001144354.1| putative methylase [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142856397|gb|ABO92606.1| DNA methylase [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 214

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 110/253 (43%), Gaps = 59/253 (23%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + G+S+ ++   P  +VD I  DPPY   L G   R   S+ + V D W         
Sbjct: 3   RFMLGDSVQIMSTFPGAAVDFILTDPPY---LVGFKDRSGRSIANDVNDEW-------VL 52

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML---QNLNFWILNDIVWRKSNP-M 137
            AFT+ +     RVLKP+ +L V  S++   R+ T +   +   F ++  +V+ KS    
Sbjct: 53  PAFTQMY-----RVLKPH-SLAV--SFYGWNRVDTFMAAWKQAGFRVVGHLVFTKSYASK 104

Query: 138 PNFRGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
             F G R + A+        + A P P    + ++                         
Sbjct: 105 AAFIGYRHECAYLLAKGRPQVPAQPLPDVMPWAYS------------------------- 139

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
                  G + HPT+KP + L  ++ S T+PGDI+LDPF GSG++   A K  R +IGIE
Sbjct: 140 -------GNRHHPTEKPVSALQPLIESFTRPGDIVLDPFAGSGSTCVAAAKCGRRYIGIE 192

Query: 253 MKQDYIDIATKRI 265
           +   Y      R+
Sbjct: 193 LLPHYHQAGLNRL 205


>gi|67924671|ref|ZP_00518079.1| DNA methylase N-4/N-6 [Crocosphaera watsonii WH 8501]
 gi|67853474|gb|EAM48825.1| DNA methylase N-4/N-6 [Crocosphaera watsonii WH 8501]
          Length = 161

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 53/122 (43%), Positives = 69/122 (56%), Gaps = 17/122 (13%)

Query: 161 AKGYTFNYDALKAANEDVQMRS--DW--LIPICSGSE------------RLRNKDGEKLH 204
            K YTFN D +K   +    R   D+   IP    S             R R ++ EK H
Sbjct: 10  TKSYTFNRDDIKIEAKTGSKRKLIDYRRAIPQVYNSHKVPGNVWYFPRVRYRMEEYEK-H 68

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PTQKPEALL RI ++S+  GD ILDPF G+ T+ AVA+KL R  IGIE+++DYI I  +R
Sbjct: 69  PTQKPEALLKRITLASSNVGDTILDPFSGTFTTSAVAQKLGRKSIGIEIEEDYIKIGLRR 128

Query: 265 IA 266
           + 
Sbjct: 129 LG 130


>gi|328952292|ref|YP_004369626.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
           11109]
 gi|328452616|gb|AEB08445.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
           11109]
          Length = 298

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 126/288 (43%), Gaps = 69/288 (23%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY------NLQLNGQLYRPDHSLVDAVTDSWDKF 75
           ++I G+++SVL  L +         PPY       +  + Q+    H LVD + +  + F
Sbjct: 15  EVICGDALSVLRNLESGICRCCITSPPYWGLRDYGVPTDHQIGAETH-LVDYIKNLVEIF 73

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWV-IG--------SYHNI--------------- 111
           +                 RVL P+GTLW+ +G        ++ +I               
Sbjct: 74  TEIH--------------RVLTPDGTLWLNLGDSYTSGNRTWRDIDKKNPARYMRYRPPT 119

Query: 112 -------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
                        +R+   LQ   +++ +DI+W K N  P     R   +HE +   S  
Sbjct: 120 PKGLKPKDLIGTPWRVAIALQEQGWYLRSDIIWFKPNCQPESVKDRPTRSHEYIFLFS-- 177

Query: 159 PKAKGYTFNYDA-LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
            K + Y +NY+A L+ +N   +     +  I +G+ +         H    P  L++  L
Sbjct: 178 -KTEKYYYNYEAILETSNSHGKRNRRTVWSINTGAFK-------GAHFATFPSKLVALCL 229

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           ++ ++ GD +LDP FGSGT G V  KL R FIGIE+ ++Y+ +A +R+
Sbjct: 230 LAGSEFGDTVLDPCFGSGTVGEVCLKLGRKFIGIEINENYVVLARERL 277


>gi|148655960|ref|YP_001276165.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus sp.
           RS-1]
 gi|148568070|gb|ABQ90215.1| DNA methylase N-4/N-6 domain protein [Roseiflexus sp. RS-1]
          Length = 460

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 167/380 (43%), Gaps = 90/380 (23%)

Query: 23  IIKGNSISVLEKLPA----KSVDLIFADPPYNLQLNG----QLYRPDHSLVDAVT----- 69
           +I G +++ L  L A    + ++LI+ DPP+   ++     +L   D + +  V      
Sbjct: 48  LIHGENLAALTWLLANGYRQRINLIYIDPPFGAGIDRVRRIRLRGSDSARLIPVPNAEYR 107

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI---- 125
           D+WD     +AY  F    L+A R +L  +G++++    H  FR   +L+ L   +    
Sbjct: 108 DTWDD----DAYLQFMYERLIALRDLLADDGSIYL----HCDFRKAHLLRCLMDEVFGAE 159

Query: 126 --LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL------------ 171
             LN+I+W    P      R+F   H+T++  + S +   +TFNYD +            
Sbjct: 160 RMLNEIIW--FYPSGGDGERQFNRKHDTILLYARSDR---WTFNYDQVLIPYTQQQLARF 214

Query: 172 KAANE------DVQMRSD----------------WLIPICSGSERLRNKDGEKLHPTQKP 209
           + A+E      +V  R +                W IPI +   R      +  +PT KP
Sbjct: 215 RQADEHGRYYWNVNPRGERVKTYLRKPGVGAYDVWTIPINAALVR------DLGYPTTKP 268

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV- 268
            ALL RI+ +S++PGD++LD F GSGT+  VA++L R +I  ++    I I  +R+  + 
Sbjct: 269 PALLDRIVRASSRPGDLVLDCFAGSGTTAVVAQQLGRRWIACDVNPGAIQITARRLRRMP 328

Query: 269 ---QPLGNIELTVLTGKRT-EPRVAFNLLVER----------GLIQPGQILTNAQGNISA 314
               P  +    V  G+ T  PR    + + R          G I P   LTN  G+++ 
Sbjct: 329 QPRDPASDGFTIVQIGETTPAPRGEATVRIVRTDAQITITVEGYINPA--LTNVSGDLTD 386

Query: 315 TVC-ADGTLISGTELGSIHR 333
             C  D  LI     G + R
Sbjct: 387 WRCMVDEILIDPAYDGRLFR 406


>gi|219850691|ref|YP_002465123.1| DNA methylase N-4/N-6 domain protein [Methanosphaerula palustris
           E1-9c]
 gi|219544950|gb|ACL15400.1| DNA methylase N-4/N-6 domain protein [Methanosphaerula palustris
           E1-9c]
          Length = 396

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 119/271 (43%), Gaps = 54/271 (19%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I+ G+S  VL +LP   VDL+   PPYN  L+                  D    ++A
Sbjct: 153 DSIVCGDSEEVLSRLPDNCVDLVLTSPPYNFGLS--------------YHEGDDGRHWDA 198

Query: 81  YDAFTRAWLLACRRVLKPNGTLWV---------IGSYHNIFRIGTMLQNLNFWILNDIVW 131
           Y +   + L  C RVLK  G   V         I ++H I +   +L     W   +I+W
Sbjct: 199 YFSKLFSILDQCVRVLKFGGRCLVNIQPLFSDNIPTHHLISQ--HLLLRRMIW-KGEILW 255

Query: 132 RKSNPMPNFRGRRFQNAHETL--IWASPSPKAKGYT------FNYDALK--AANEDVQMR 181
            K+N           N   T    W SPS     YT      F+   LK     E + + 
Sbjct: 256 EKNN----------YNCKYTAWGSWKSPSAPYLKYTWEFIEVFSKGDLKKTGPKEGIDIT 305

Query: 182 SD----WLIPICS-GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
           +D    W++   S G ER   +     HP   PE L+ R L   +  GD++LDPF G GT
Sbjct: 306 ADEFKAWVVARWSIGPERQMKRYN---HPAMFPEELVERALKLFSYQGDLVLDPFNGVGT 362

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           +  VA++L+R FIG+++  +Y   A +R+++
Sbjct: 363 TTLVARRLQRRFIGVDLSPEYCATARERLSN 393


>gi|21232398|ref|NP_638315.1| site-specific DNA-methyltransferase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|21114176|gb|AAM42239.1| site-specific DNA-methyltransferase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 234

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 109/259 (42%), Gaps = 38/259 (14%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLV---------DA 67
           K+++++G+++++L  L A S D +  DPPY    L    +   P    V         D 
Sbjct: 2   KNQLLQGDALTILPTLEANSFDALITDPPYASGGLHAAARAKPPSQKYVQGGGAQLHADF 61

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
           V D  D+ S  +    +   WL  C RVLK    + +   +  +      LQ   F    
Sbjct: 62  VGDERDQRSHLK----WMHLWLSECARVLKDGAPVLLFTDWRQLPLTTDALQIAGFTWRG 117

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
             VW K+  +    GR F+N  E ++W S     KG                M  D   P
Sbjct: 118 ITVWDKTEGVRPQLGR-FRNQAEYIVWGS-----KG---------------NMPLDRRAP 156

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           +  G  R   +  +K H T KP  L+ R LV   + G  ILDPF GSGT+   A+     
Sbjct: 157 VLPGVIRESVRKADKHHLTGKPTELM-RQLVRICEAGGRILDPFAGSGTTLVAAELEGYG 215

Query: 248 FIGIEMKQDYIDIATKRIA 266
           + G+E+   Y D+A  R+A
Sbjct: 216 WTGVELTSHYSDVARTRLA 234


>gi|229269516|ref|YP_001338706.2| putative methylase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 233

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 108/255 (42%), Gaps = 48/255 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I GN I V+   P ++VDLI  DPPY   L G   R    +   VTD W + ++ E Y
Sbjct: 3   RFILGNCIDVMRGFPDRAVDLIVTDPPY---LVGFKDRQGRQIAGDVTDEWLQPATLEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK---SNPMP 138
                       RVLK +  +    S++ + R     +   F+ +  +V+ K   SN   
Sbjct: 60  ------------RVLKKDALMVSFYSWNRVDRFMAAWKAAGFYAVGQLVFTKNYASNRRN 107

Query: 139 NFRGRRFQN-AHE---TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
               R F +  HE    L    P P  K              DV       +P       
Sbjct: 108 ARARRGFVDYCHEGAYVLAKGRPVPPLKPL-----------PDV-------LPF------ 143

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                G  LHPTQKP   L  ++ S + PG I+LDPF GSG++   A +  R +IGIEM 
Sbjct: 144 --PYTGNTLHPTQKPVEALQPLIESFSAPGAIVLDPFAGSGSTCVAAYRAGRRYIGIEML 201

Query: 255 QDYIDIATKRIASVQ 269
             Y    T+R+A++ 
Sbjct: 202 AQYHRAGTERLAAMH 216


>gi|320538779|ref|ZP_08038457.1| putative DNA methylase [Serratia symbiotica str. Tucson]
 gi|320031168|gb|EFW13169.1| putative DNA methylase [Serratia symbiotica str. Tucson]
          Length = 214

 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 119/257 (46%), Gaps = 55/257 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I G+S+ V+   PA S+D I  DPPY   L G   R   S+ +   D W + +  E +
Sbjct: 3   RYILGDSMQVMAGYPANSIDFILTDPPY---LVGYTDRSGRSIANDKKDDWVRPAFREIF 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML---QNLNFWILNDIVWRKSNPMP 138
                       R+LKP+ +L V  S++   R+ T +   +   F ++  +V+ K     
Sbjct: 60  ------------RLLKPD-SLAV--SFYGWNRVDTFMAAWKQTGFRVVGHLVFTKPYASK 104

Query: 139 N-FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD---WLIPICSGSER 194
           + F G + + A+   I A   P          AL A     Q RSD   W          
Sbjct: 105 SAFVGYQHECAY---ILAKGRP----------ALPA-----QPRSDVQPW---------- 136

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                G + HPT+KP ++L  ++ S T+PG I+LDPF GSG++   A +  R +IGIE+ 
Sbjct: 137 --EYTGNRHHPTEKPVSILQALIESFTQPGAIVLDPFAGSGSTCVAAAQAGRRYIGIELL 194

Query: 255 QDYIDIATKRIASVQPL 271
             Y  I  +R+  ++PL
Sbjct: 195 AQYHTIGQQRLHRMRPL 211


>gi|167554071|ref|ZP_02347812.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205321633|gb|EDZ09472.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 225

 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 107/254 (42%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I+GN + ++   P  +VD I  DPPY   L G   R   ++    TD W + +S E Y
Sbjct: 3   RFIQGNCVHIMSGFPDNAVDFILTDPPY---LVGFRDRQGRTIAGDKTDEWLQPASHEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  L     ++ + R     +   F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALLISFYGWNRVDRFMAAWKKAGFSVVGHLVFTKTYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T PG I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPGAIVLDPFAGSGSTCVAALQAGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+V+
Sbjct: 196 QYHRTGQQRLAAVR 209


>gi|60115640|ref|YP_209431.1| putative methylase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|45758198|gb|AAS76410.1| putative site-specific DNA methyl transferase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
          Length = 227

 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 108/254 (42%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPY---LVGFRDRQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R  +  +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P  +G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPALPQKPLPDVQGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|260583506|ref|ZP_05851254.1| DNA (cytosine-5-)-methyltransferase [Granulicatella elegans ATCC
           700633]
 gi|260158132|gb|EEW93200.1| DNA (cytosine-5-)-methyltransferase [Granulicatella elegans ATCC
           700633]
          Length = 178

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 22/176 (12%)

Query: 94  RVLKPNGTLWVIGSYHNIFRIGTMLQNLN---FWILNDIVWRKSNPMPNFRGRRFQNAHE 150
           R+LK NGT  ++  + +I R+ T+++ +N   F+     +W K+NP+P      F N++E
Sbjct: 14  RILK-NGTSMIV--FMSILRVETLVEIVNEFGFYYKTTGIWHKTNPIPRNMNLHFINSNE 70

Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL-IPICSGSERLRNKDGEKLHPTQKP 209
              W   + K K  TFN           ++  D++   + +  E+   K     HPTQKP
Sbjct: 71  C--WIYFTYKTKTGTFNNKG--------KLVLDYIETSVTTAREKKLGK-----HPTQKP 115

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
             L    +   +  GD+++DPF GSG+S   + +L R+FIG+E+++ Y  +A  R+
Sbjct: 116 IILFEHFIRLLSNEGDLVVDPFLGSGSSAIASYRLNRNFIGVELEEKYAKLANMRV 171


>gi|323692831|ref|ZP_08107058.1| modification DNA methylase [Clostridium symbiosum WAL-14673]
 gi|323503145|gb|EGB18980.1| modification DNA methylase [Clostridium symbiosum WAL-14673]
          Length = 318

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 119/322 (36%), Gaps = 87/322 (27%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW-DKFSSFE 79
           DKI  G+S+ VL+ LP  +VD     PPY            ++L D   D    + ++ E
Sbjct: 6   DKIYCGDSLQVLQTLPENAVDCCVTSPPY------------YALRDYGADGQIGREATPE 53

Query: 80  AYDAFTRAWLLACRRVLKPNGTLW--VIGSYHNI-------------------------- 111
            Y +   A     +RVL P GT W  +  +Y                             
Sbjct: 54  EYVSRITAVFHEVKRVLTPEGTCWLNIADTYCGTGSKADHQDPKYPKGRNGQQVAFNHRA 113

Query: 112 ------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
                       + +   L+   +++ + I+W K+NPMP     R    +E +   + S 
Sbjct: 114 PGCKPKDLIGIPWLVALALRGDGWYLRSSIIWHKTNPMPESTRDRPTRCYEYVFLLTKSK 173

Query: 160 K------------------------AKGYTFNY--------DALKAANEDVQMRSDWLIP 187
           K                         KG  +N           +    E      + + P
Sbjct: 174 KYFYDWQAVAEPIAPTTAGRLKSGVGKGNKYNVTVPGQNQPQKINRPREKGAYADELISP 233

Query: 188 ICSGSE--RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           + S     ++ N      H    P  L    +++    G I+LDPFFGSGT+G VAK+L 
Sbjct: 234 VRSRRNVWQINNVAYHGGHFAAYPPKLAETCILAGCPVGGIVLDPFFGSGTTGMVAKRLN 293

Query: 246 RSFIGIEMKQDYIDIATKRIAS 267
           R +IGIE+  DY D+A +RI  
Sbjct: 294 RRYIGIELNPDYCDLAKQRIGG 315


>gi|331703183|ref|YP_004399870.1| modification methylase [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|328801738|emb|CBW53891.1| modification methylase [Mycoplasma mycoides subsp. capri LC str.
           95010]
          Length = 400

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 121/278 (43%), Gaps = 61/278 (21%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW---DKFSSFEAYDAFTRAW 88
           L++L   S+DL++ DPP+  Q         H LVD     +   D +   + Y  F +  
Sbjct: 26  LKQLKDNSIDLVYLDPPFFTQ-------KAHFLVDKTNKKYFFNDIWKDLKEYQEFLKIR 78

Query: 89  LLACRRVLKPNGTLWVI--GSYHNIFRI--GTMLQNLNFWILNDIVW---RKSNPMPNFR 141
           L+  +RVLK  G+++V    + ++I R+    +  ++NF   ++I+W   R SN      
Sbjct: 79  LIEIKRVLKSTGSVFVHCDKTANHIIRVLLDEVFGSINFR--SEIIWVYKRWSNS----- 131

Query: 142 GRRFQNAHETLIWASPSPKAK--------GYTFNYDAL-----KAANEDVQMRSD----- 183
            +   ++H+ +   S +   K          T N D +     K  N     + D     
Sbjct: 132 KKGLLDSHQNIYHYSKTNDFKFNVIYTDYSLTTNIDQILQLRVKDKNNKTVYKKDKNNNI 191

Query: 184 --------------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
                         W IP  +   + R       +PTQKP  LL RI+   T   D++LD
Sbjct: 192 VFSDLKKGVPLSDVWNIPFLNPKAKERAS-----YPTQKPIELLERIISLVTNENDVVLD 246

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           PF GSGTS   +K L R+FIG +   D IDI  +R+ +
Sbjct: 247 PFVGSGTSVVASKLLNRNFIGFDNNIDAIDITNQRLKN 284


>gi|215481968|ref|YP_002324150.1| Modification methylase CfrBI [Acinetobacter baumannii AB307-0294]
 gi|213986000|gb|ACJ56299.1| Modification methylase CfrBI [Acinetobacter baumannii AB307-0294]
          Length = 384

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 122/293 (41%), Gaps = 59/293 (20%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
           + + + ++ E ++ +I+GNSI  L+ LP  SV+LIF  PPY    N    +P++S     
Sbjct: 102 LTKKEITLSELENMVIEGNSIESLKYLPEDSVNLIFTSPPY---YNA---KPEYS----- 150

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG-------------SYHNI---F 112
                ++S++E Y    R  +  C RVL   G  +V+              S   I   F
Sbjct: 151 -----EYSTYEEYLELMRQVIKGCHRVLS-EGRFFVLNISPVLIRRASRSESSKRIAVPF 204

Query: 113 RIGTMLQNLNFWILNDIVWRKSNPM--PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
               +     F  ++DI W K         RGRRF      L +  P P  + Y   Y  
Sbjct: 205 DFHKLFIEEGFEFIDDIHWVKPEGAGWAFGRGRRFAADRNPLQY-KPVPVTE-YILVY-- 260

Query: 171 LKAANEDVQMRSDWLI---PICSGSERLRNKDG-------------EKLHPTQKPEALLS 214
                +      DW I   P     E  + +DG              K HP   P  L  
Sbjct: 261 ----RKKTDRLIDWNIRKHPDQKAVEESKVEDGYETTNLWRINPSRSKDHPATFPVELAE 316

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           +++   +   D++LDPF GSGT+G  A  L R F+ +E++  YI +  KR +S
Sbjct: 317 KVIKYYSFKNDVVLDPFGGSGTTGIAALNLNRRFVMMELESKYIQVMKKRFSS 369


>gi|170766101|ref|ZP_02900912.1| hypothetical adenine-specific methylase YhdJ [Escherichia albertii
           TW07627]
 gi|170125247|gb|EDS94178.1| hypothetical adenine-specific methylase YhdJ [Escherichia albertii
           TW07627]
          Length = 106

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 48/62 (77%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPTQKPEALL RI+++S+ PGD++LDPF GS T+GAVA    R FIGIE+  +YI +  +
Sbjct: 7   HPTQKPEALLQRIILASSNPGDVVLDPFAGSFTTGAVAIATGRKFIGIEINNEYIKMGLR 66

Query: 264 RI 265
           R+
Sbjct: 67  RL 68


>gi|309774777|ref|ZP_07669799.1| DNA (cytosine-5-)-methyltransferase [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308917462|gb|EFP63180.1| DNA (cytosine-5-)-methyltransferase [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 299

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 123/296 (41%), Gaps = 53/296 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN------------------GQLYRPDH 62
           + II GNSI  ++ + ++SV LI +D PY + L+                   Q   P  
Sbjct: 4   NSIICGNSIEEIKNIDSESVHLILSDIPYGISLDTWDILHNNTNSSLLGTSPAQKKSPVF 63

Query: 63  SLVDAVTDSW---DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
                  + W   DK    E Y+ +   W     RVLKP  + +V        R    ++
Sbjct: 64  KKRGKPLNGWSEADKNMPIEYYN-WCSTWAEEWLRVLKPGASCFVFAGRRFSHRCICAME 122

Query: 120 NLNFWILNDIVWRKSNPMPNFRG------RRFQNAH----------------ETLIW-AS 156
           +  F   + I W K       +       RR  N +                E ++W   
Sbjct: 123 DAGFIFKDMIAWEKDAAAHRAQNVKVVFERRGDNENATKWEGWKLGNLRPLFEPILWFMK 182

Query: 157 PSPKAKGYTFN--YDALKAANEDVQMRSDWL----IPICSGSERLR-NKDGEKLHPTQKP 209
           P P     T N    ++   NE+   +++ L    I ICS   R + ++D   LHP QKP
Sbjct: 183 PYPIGGTLTDNIRLHSVGGYNEEY-FKNNPLNNSGIEICSNIIRCKTSQDDRGLHPAQKP 241

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
            AL+  ++  +T  G +ILDPF G G++   AK L R +IGIE+  +Y  I ++R+
Sbjct: 242 VALMEFLINLTTVEGQVILDPFCGCGSTLVAAKNLNREYIGIELNPEYCKIISERL 297


>gi|332347857|gb|AEE60098.1| putative DNA methylase [Escherichia coli UMNK88]
          Length = 227

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 105/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I+GN + V+   P  +VD I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFIQGNCVRVMATFPGNAVDFILTDPPY---LVGFRDRQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPALPQKPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|210611258|ref|ZP_03288813.1| hypothetical protein CLONEX_01003 [Clostridium nexile DSM 1787]
 gi|210152022|gb|EEA83029.1| hypothetical protein CLONEX_01003 [Clostridium nexile DSM 1787]
          Length = 327

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 130/328 (39%), Gaps = 99/328 (30%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           D I  G+ + VL+ LP +SV      PPY    +  ++GQ+ R          ++  K  
Sbjct: 16  DHIYTGDCLEVLKTLPDESVHCCITSPPYYALRDYGVDGQIGR----------EATPKEY 65

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWV-----------IGSYHNI-------------- 111
                + FT       RRVL+ +GTLW+            GSY +               
Sbjct: 66  ISRLTEVFTEV-----RRVLRSDGTLWLNISDTYAGKGNQGSYVDAKNPKGRNGQAVALN 120

Query: 112 ---------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
                          + +   L++  +++ NDI+W K NPMP     R    +E +   S
Sbjct: 121 YKVEGCKPKDMIGIPWMLAFSLRDSGWYLRNDIIWMKENPMPESVKDRCARCYEHIFLFS 180

Query: 157 PSPKAKGYTFNYDALK------AANE---DVQMRSDWLIPICSGSER------------- 194
              KA+ Y F+Y A+        AN     V+  + +  PI   ++              
Sbjct: 181 ---KARKYFFDYKAISEPIAPGTANRLKRGVKGSNKYGEPIPGQAKPQTINLCREHGAIP 237

Query: 195 ------LRNKDG---------EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
                 LRNK           +  H    P  L+   L++      ++LDPF GSGT+G 
Sbjct: 238 DEMINPLRNKRDVWIINTVPFKGGHYAAYPPKLVETCLLAGCPKDGVVLDPFMGSGTTGM 297

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           VAK+L R ++GIE+K +Y ++A  RI  
Sbjct: 298 VAKQLDRHYVGIELKPEYKELAEARIGG 325


>gi|194097603|ref|YP_002000639.1| putative modification methylase [Neisseria gonorrhoeae NCCP11945]
 gi|240124889|ref|ZP_04737775.1| putative modification methylase [Neisseria gonorrhoeae SK-92-679]
 gi|240127401|ref|ZP_04740062.1| putative modification methylase [Neisseria gonorrhoeae SK-93-1035]
 gi|193932893|gb|ACF28717.1| putative modification methylase [Neisseria gonorrhoeae NCCP11945]
          Length = 92

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/95 (41%), Positives = 58/95 (61%), Gaps = 5/95 (5%)

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
           +K  N+  QM+  W  P  + +E+   K     HPTQKP  LL R ++S++  GD+I DP
Sbjct: 1   MKTQNDGKQMKCVWTFPPPNKTEKTFGK-----HPTQKPLPLLERCILSASNIGDLIFDP 55

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           F GSGT+G  A K  R F G E+++D+ ++A KR+
Sbjct: 56  FMGSGTTGVAALKHGRRFCGCELEEDFFELAKKRL 90


>gi|78189365|ref|YP_379703.1| DNA modification methylase-like [Chlorobium chlorochromatii CaD3]
 gi|78171564|gb|ABB28660.1| DNA modification methylase-like protein [Chlorobium chlorochromatii
           CaD3]
          Length = 264

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 132/273 (48%), Gaps = 54/273 (19%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ-LNGQLYRPD--------HSLVDAV 68
           ++ + II  +S++V+E++P K +D+    PPYNL+   G   + +        ++L +  
Sbjct: 6   DYINTIICADSLTVMEQMPDKCIDIAVTSPPYNLKNSTGNGMKANTKSGKWAGNALQNGY 65

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
           +   D   + E Y  +    L A  R+LK +G ++    Y++ +R+   L      I+ D
Sbjct: 66  SHYNDNIPNDE-YAEWQYNCLKAMYRLLKDDGAIF----YNHKWRVQNGLIQDRTDIIRD 120

Query: 129 ------IVWRKSNPMPNFRGRRFQNAHETL-IWASPS----PKAKGYTFNYDALKAANED 177
                 I+W++   + NF    F   +E + + A PS    PKA  Y            D
Sbjct: 121 LPVRQIIIWKRKGGI-NFNPGYFLPTYEVIYLIAKPSFKLLPKANAYG-----------D 168

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           V     W       ++ ++N      HP   P AL+ RI+ S++    IILDPF GSGT+
Sbjct: 169 V-----W-----EFTQEMKNN-----HPAPFPVALIDRIISSTS--AQIILDPFMGSGTT 211

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
              A +L+R++IGI++  DY ++A +RI ++ P
Sbjct: 212 AVAALQLQRNYIGIDISPDYCEMAKERILNLNP 244


>gi|16082855|ref|NP_395409.1| putative methylase [Yersinia pestis CO92]
 gi|31795413|ref|NP_857866.1| putative methylase [Yersinia pestis KIM]
 gi|45478689|ref|NP_995545.1| putative methylase [Yersinia pestis biovar Microtus str. 91001]
 gi|52788188|ref|YP_094016.1| putative methylase [Yersinia pestis]
 gi|108793616|ref|YP_636775.1| putative methylase [Yersinia pestis Antiqua]
 gi|108793820|ref|YP_636667.1| putative methylase [Yersinia pestis Nepal516]
 gi|145597307|ref|YP_001154780.1| putative methylase [Yersinia pestis Pestoides F]
 gi|149192726|ref|YP_001293957.1| putative methylase [Yersinia pestis CA88-4125]
 gi|161484926|ref|NP_857710.2| putative methylase [Yersinia pestis KIM]
 gi|165928425|ref|ZP_02224257.1| DNA methylase [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165939441|ref|ZP_02227988.1| DNA methylase [Yersinia pestis biovar Orientalis str. IP275]
 gi|165940200|ref|ZP_02228731.1| DNA methylase [Yersinia pestis biovar Orientalis str. IP275]
 gi|165940237|ref|ZP_02228766.1| DNA methylase [Yersinia pestis biovar Orientalis str. IP275]
 gi|166012173|ref|ZP_02233071.1| DNA methylase [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166214386|ref|ZP_02240421.1| DNA methylase [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167402238|ref|ZP_02307709.1| DNA methylase [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167422985|ref|ZP_02314738.1| DNA methylase [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167467603|ref|ZP_02332307.1| putative DNA methylase [Yersinia pestis FV-1]
 gi|229897032|ref|ZP_04512191.1| putative DNA methylase [Yersinia pestis Pestoides A]
 gi|229897786|ref|ZP_04512941.1| putative DNA methylase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229900345|ref|ZP_04515479.1| putative DNA methylase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229904783|ref|ZP_04519893.1| putative DNA methylase [Yersinia pestis Nepal516]
 gi|270490952|ref|ZP_06208025.1| DNA (cytosine-5-)-methyltransferase [Yersinia pestis KIM D27]
 gi|294502064|ref|YP_003565801.1| putative DNA methylase [Yersinia pestis Z176003]
 gi|3883083|gb|AAC82743.1| unknown [Yersinia pestis KIM 10]
 gi|5834748|emb|CAB55246.1| putative DNA methylase [Yersinia pestis CO92]
 gi|45357342|gb|AAS58736.1| putative DNA methylase [Yersinia pestis biovar Microtus str. 91001]
 gi|52538117|emb|CAG27543.1| putative hemagglutinin-associated protein [Yersinia pestis]
 gi|108777884|gb|ABG20402.1| DNA methylase [Yersinia pestis Nepal516]
 gi|108782163|gb|ABG16220.1| DNA methylase [Yersinia pestis Antiqua]
 gi|145213075|gb|ABP42480.1| DNA methylase [Yersinia pestis Pestoides F]
 gi|148872384|gb|ABR14873.1| putative DNA methylase [Yersinia pestis CA88-4125]
 gi|165911828|gb|EDR30476.1| DNA methylase [Yersinia pestis biovar Orientalis str. IP275]
 gi|165911881|gb|EDR30527.1| DNA methylase [Yersinia pestis biovar Orientalis str. IP275]
 gi|165912629|gb|EDR31259.1| DNA methylase [Yersinia pestis biovar Orientalis str. IP275]
 gi|165919566|gb|EDR36899.1| DNA methylase [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165988907|gb|EDR41208.1| DNA methylase [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166204444|gb|EDR48924.1| DNA methylase [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166957108|gb|EDR55129.1| DNA methylase [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167048340|gb|EDR59748.1| DNA methylase [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|229678098|gb|EEO74204.1| putative DNA methylase [Yersinia pestis Nepal516]
 gi|229686598|gb|EEO78680.1| putative DNA methylase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229693367|gb|EEO83417.1| putative DNA methylase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229700068|gb|EEO88108.1| putative DNA methylase [Yersinia pestis Pestoides A]
 gi|262363958|gb|ACY60677.1| putative DNA methylase [Yersinia pestis D106004]
 gi|262364118|gb|ACY64454.1| putative DNA methylase [Yersinia pestis D182038]
 gi|270334933|gb|EFA45711.1| DNA (cytosine-5-)-methyltransferase [Yersinia pestis KIM D27]
 gi|294352535|gb|ADE66591.1| putative DNA methylase [Yersinia pestis Z176003]
 gi|317374553|gb|ADV16728.1| adenine-specific methyltransferase [Yersinia pestis]
 gi|320017613|gb|ADW01183.1| putative DNA methylase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 225

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 106/249 (42%), Gaps = 43/249 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I+GN + ++   P  +VD I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFIQGNCVHIMSGFPDNAVDFILTDPPY---LVGFRDRQGRTIAGDKTDEWLQPACHEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYTSKAAY 107

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G R + A+       P P+              N+ +  +                  G
Sbjct: 108 VGYRHECAYILAKGRPPLPQ-----------NPLNDVIAWKYS----------------G 140

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            + HPT+KP   L  ++ S T PG I+LDPF GSG++   A +  R +IGIE+ + Y   
Sbjct: 141 NRHHPTEKPVTSLQPLIESFTHPGAIVLDPFAGSGSTCVAALQAGRRYIGIELLEQYHRA 200

Query: 261 ATKRIASVQ 269
             +R+A+V+
Sbjct: 201 GQQRLAAVR 209


>gi|298674310|ref|YP_003726060.1| DNA methylase N-4/N-6 domain-containing protein [Methanohalobium
           evestigatum Z-7303]
 gi|298287298|gb|ADI73264.1| DNA methylase N-4/N-6 domain protein [Methanohalobium evestigatum
           Z-7303]
          Length = 260

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 120/253 (47%), Gaps = 31/253 (12%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK--F 75
           E K K+ + +++  ++ LP  SVD+I  DP Y+  +N ++   +  +V    +  +   F
Sbjct: 13  EGKVKLYQDDALDFIKGLPENSVDIIVTDPAYS-GMNQKMKFGNGRIVGEYKNENNNKWF 71

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
             F   +   R +L  C +VLK N  ++++   +++  +G +L+   F + N IVW K N
Sbjct: 72  QEFHDTEDNYRYFLSQCYKVLKDNSHIYIMFDSYSLLSLGNLLREY-FNVKNIIVWDKVN 130

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
                 G  F+  HE +I+A+                  N+ +  RS   IP     +R+
Sbjct: 131 MG---MGHYFRRRHEFVIFAT----------------KGNKKLISRS---IPDVWRFKRI 168

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDI-ILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            NK     +PTQKP  L   +L  S    ++ + DPF GSG+S   A K   +FIG +  
Sbjct: 169 YNK----CYPTQKPVELFEAMLAGSVDNENLTVCDPFVGSGSSAIAALKKNCNFIGNDTD 224

Query: 255 QDYIDIATKRIAS 267
           +  +  +++RI S
Sbjct: 225 EKALKTSSERIDS 237


>gi|209524051|ref|ZP_03272602.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
 gi|209495426|gb|EDZ95730.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
          Length = 495

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 139/328 (42%), Gaps = 93/328 (28%)

Query: 26  GNSISVLEK-LPAKSVDLIFADPPYNLQLN-GQLYR----PDHSLVDAVTDSWD----KF 75
           G+++ VL + +   SVDL + DPP+N + N  Q+Y      D +   A  D+W+      
Sbjct: 8   GDNLEVLRRYIKDDSVDLCYIDPPFNSKRNYNQIYNNIGSEDKAQAQAFIDTWEWDNRAM 67

Query: 76  SSFEAYDA-----FTR-------------------AWLLA-------CRRVLKPNGTLWV 104
             FE         FT                    A+L++         RVLKP G+ ++
Sbjct: 68  HGFEEISTNYNGLFTEQAVYLITGLENVLGKGSLLAYLVSMTLRITEIHRVLKPTGSFYL 127

Query: 105 ----IGSYHNIFRIGTMLQNLNFWILNDIVW---RKSNPMPNFRGRRFQNAHETLIWASP 157
                 S++    +  +  +     LN+I+W       P  +F GRR    H+ +   S 
Sbjct: 128 HCDPTASHYLKLVLDAVFCSQGGNFLNEIIWCYRGAGYPKKDF-GRR----HDLIFRYS- 181

Query: 158 SPKAKGYTFNYDAL------------------KAANEDVQMRS---------DW--LIPI 188
             K K +TFN D++                  K   +D   +S         DW  + PI
Sbjct: 182 --KGKEFTFNLDSVREEYAETTKKRFSHYIGNKRGKKDFGQQSLNPLGKQPDDWWEIQPI 239

Query: 189 C-SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
             S  ERL        +PTQKPEALL RI+ +S+  GDI+LD + G GT+ AV +K  R 
Sbjct: 240 APSARERLG-------YPTQKPEALLERIIKASSNEGDIVLDAYCGCGTTVAVCEKFNRK 292

Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNIE 275
           +IGI++    I +  KR+      G +E
Sbjct: 293 WIGIDITYQSISLILKRLEDSFGKGVLE 320


>gi|224437420|ref|ZP_03658389.1| DNA methylase N-4/N-6 domain protein [Helicobacter cinaedi CCUG
           18818]
 gi|313143882|ref|ZP_07806075.1| DNA methylase N-4/N-6 [Helicobacter cinaedi CCUG 18818]
 gi|313128913|gb|EFR46530.1| DNA methylase N-4/N-6 [Helicobacter cinaedi CCUG 18818]
          Length = 274

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/273 (30%), Positives = 122/273 (44%), Gaps = 34/273 (12%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +I G+++S L+KL   S+D+    PPYN Q N + +   + L D   D  D+    +AY 
Sbjct: 2   LICGDTLSELQKLENDSIDMGVTSPPYNKQENKRGWLVKNVLYDNTCDKLDE----KAYQ 57

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNI-FRIGTMLQNLNF-----WIL-NDIVWRKSN 135
               A L    R+ K  G+ +     H I +  G +L  L +     W L  +I+W +  
Sbjct: 58  ENQIAVLNELYRITKEGGSFFY---NHKIRWEKGKLLHPLQWISQTKWNLRQEIIWDRG- 113

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
              N RG RF    E + W    PK K             E++Q R   L  I     R+
Sbjct: 114 IAGNIRGWRFWQIEERIYWLI-KPKGKNLI---------GEELQSRHALLSSIW----RI 159

Query: 196 RNKDGEKLHPTQKPEALLSRILVSS-TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           R  +    HP   P AL  R + S   + G +++DP+ GSGT+G  AK L   FIGI+  
Sbjct: 160 R-PESNNAHPAPFPLALPLRCIFSILNENGGVVIDPYCGSGTTGIAAKILNCDFIGIDNA 218

Query: 255 QDYIDIATKRIASVQPL---GNIELTVLTGKRT 284
           + Y+ +A  RI + Q       +EL +   K T
Sbjct: 219 KTYLTLAESRITNYQHFLKEAQLELNLHEVKET 251


>gi|163839947|ref|YP_001624352.1| adenine specific DNA methylase [Renibacterium salmoninarum ATCC
           33209]
 gi|162953423|gb|ABY22938.1| adenine specific DNA methylase [Renibacterium salmoninarum ATCC
           33209]
          Length = 285

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 127/288 (44%), Gaps = 64/288 (22%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYN--------------------LQLNGQLYRPD- 61
           +++  + S L  LP  +  LI+ DPP+N                    L   GQ Y    
Sbjct: 14  VVEAENSSYLSTLPDGAFSLIYLDPPFNTGRTQKRQSTTMVRSQSGSRLGFCGQNYETVK 73

Query: 62  ---HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
              H   DA TD W          AF    L+   R+L  +GTL++   Y  +     ML
Sbjct: 74  GALHHYDDAFTDYW----------AFLEPRLVEAWRLLSEDGTLYLHLDYREVHYAKVML 123

Query: 119 QNL--NFWILNDIVWRKSNPMPNFRGR---RFQNAHETLIWASPSPKAKGYTFNYDALK- 172
             +      LN+I+W       +F  R   R+   H+ ++    +P    Y F+  A+  
Sbjct: 124 DAIFGRESFLNEIIWAY-----DFGARANKRWPTKHDNILVYVKNPNK--YHFDNAAVDR 176

Query: 173 ----------AANEDV-QMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
                     AA   + ++ +D W   I S + +   K G   +PTQKP  LL R++ +S
Sbjct: 177 EPYMAPGLVTAAKVALGKLPTDVWWHTIVSPTGK--EKTG---YPTQKPVGLLRRVVAAS 231

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           ++PGD +LD F GSGT GAV+  L R F+ ++     I+I T+R+++V
Sbjct: 232 SRPGDWVLDFFAGSGTIGAVSVALDRRFVCVDQNPAAIEIMTQRLSNV 279


>gi|188577617|ref|YP_001914546.1| DNA methylase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188522069|gb|ACD60014.1| DNA methylase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 236

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 109/259 (42%), Gaps = 38/259 (14%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLV---------DA 67
           K+++++G+++++L  L A   D +  DPPY    L    +   P    V         D 
Sbjct: 2   KNQLLQGDALTILPTLEANLFDALITDPPYASGGLTAAARAKPPSQKYVQGGGAQLHADF 61

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
           V D  D+      + A+   WL  C R+LK    + +   +  +      LQ   F    
Sbjct: 62  VGDERDQ----RGHLAWMHLWLSECARLLKEGAPVLLFTDWRQLPLTTDALQAAGFTWRG 117

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
             VW K+  +    GR F+N  E ++W S     KG                M  D   P
Sbjct: 118 VAVWDKTEGVRPQLGR-FRNQAEYIVWGS-----KG---------------GMPLDRRAP 156

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           +  G  R      +K H T KP  L+ R LV   + G  ILDPF GSGT+   A+     
Sbjct: 157 VLPGVVRTPVLKADKHHLTGKPTELMRR-LVRICEAGGRILDPFAGSGTTLVAAELEGYR 215

Query: 248 FIGIEMKQDYIDIATKRIA 266
           + G+EM Q Y +IA +R+A
Sbjct: 216 WTGVEMTQHYAEIARERLA 234


>gi|118575712|ref|YP_875455.1| DNA modification methylase [Cenarchaeum symbiosum A]
 gi|118194233|gb|ABK77151.1| DNA modification methylase [Cenarchaeum symbiosum A]
          Length = 288

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 115/284 (40%), Gaps = 66/284 (23%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +++I  G++ +VL KL   SVDL    PPY                       D    ++
Sbjct: 30  RNRIYCGDAAAVLAKLGDGSVDLAVTSPPY-----------------------DNLRDYQ 66

Query: 80  AYDAFTRAWLLACRRVLKPNGTL-WVIGSY------HNIFRIGTMLQNLNFWILNDIVWR 132
            Y            RVL+  G L WV+G           FR G   Q+L F + + +++R
Sbjct: 67  GYSFDFDGICSQLYRVLRKGGVLVWVVGDRIAGGRSLTSFRQGLAFQDLGFSMHDIMIYR 126

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM-----RSD---- 183
           K N  P  R   + N +E +   S   K +   F     K     ++M     +SD    
Sbjct: 127 KKN-TPFMRSNAYTNCYEFMFVLS---KGRPRVFRPIMEKTKRSGMEMLVHNKKSDGINK 182

Query: 184 ---------------WLIPICSGS---ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
                          W   +  G    +R   K     HP   PE L    ++S +KPGD
Sbjct: 183 KTLAELKPEKTRTNIWDYAVGLGGTTCDRFAFK-----HPAMFPEKLAQDHILSWSKPGD 237

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           ++LDP  GSGT+  +A    R +IGIE+ ++Y  IA +R+A +Q
Sbjct: 238 LVLDPMCGSGTTCKMAAANGRDYIGIEISKEYAAIARRRMAGIQ 281


>gi|116671332|ref|YP_832265.1| site-specific DNA-methyltransferase (adenine-specific)
           [Arthrobacter sp. FB24]
 gi|116611441|gb|ABK04165.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Arthrobacter sp. FB24]
          Length = 290

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 126/287 (43%), Gaps = 60/287 (20%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYN----------------------LQLNGQLYRP 60
           ++  ++   L  LP  +  LI+ DPP+N                      +   G+ Y  
Sbjct: 14  VVHADNAEYLPTLPDGAFTLIYVDPPFNTGRAQSRQQTTMVRNADGGGDRVGFKGRSY-- 71

Query: 61  DHSLVDAVTDSWDKFS-SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
                D +  +  K+  +F  Y +F    L+   R+L  +GTL++   Y  +     ML 
Sbjct: 72  -----DTIKGALHKYDDAFSDYWSFLEPRLVEAWRLLADDGTLYLHLDYREVHYAKVMLD 126

Query: 120 NL--NFWILNDIVWRKSNPMPNFRGR---RFQNAHETLIWASPSPKAKGYTFNYDALK-- 172
            +      LN+I+W       ++  R   R+   H+ ++    +P    Y FN   +   
Sbjct: 127 AIFGRECFLNEIIWAY-----DYGARAKFRWPTKHDNILVYVKNPAK--YHFNSAEVDRE 179

Query: 173 ----------AANEDVQMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
                        E  ++ +D W   I S + + +       +PTQKPE L+ R++ +S+
Sbjct: 180 PYMAPGLVTPEKRELGKLPTDVWWHTIVSPTGKEKTG-----YPTQKPEGLIRRVVAASS 234

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +PGD  LD F GSGT GAVA KL R F+ ++  Q  I++ +KR++++
Sbjct: 235 RPGDWCLDFFAGSGTLGAVAAKLDRKFVCVDQNQPAIEVMSKRLSAL 281


>gi|284005615|ref|YP_003391435.1| DNA methylase N-4/N-6 domain protein [Spirosoma linguale DSM 74]
 gi|283820799|gb|ADB42636.1| DNA methylase N-4/N-6 domain protein [Spirosoma linguale DSM 74]
          Length = 644

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 139/341 (40%), Gaps = 97/341 (28%)

Query: 19  WKDKIIKGNSISVLEKLPAK---SVDLIFADPPYN--------LQLNGQLYRPDHSLVDA 67
           W ++I  G+++ V+  L  K    VDLI+ DPP++        +QL G+    D +  + 
Sbjct: 62  WMNQIFWGDNLQVMSHLLKKFRGQVDLIYIDPPFDSKADYKKKIQLRGKDIMNDATSFEE 121

Query: 68  --VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL---- 121
              TD W    + + Y  F    L+  + +L   G+++V   YH    I ++L  +    
Sbjct: 122 KQYTDIW----TNDEYLQFMYERLIILKELLSEKGSIYVHCDYHKSHYIRSLLDEIFGQN 177

Query: 122 NFWILNDI----------------------------------VW------------RKSN 135
           NF  LN+I                                  +W            +++ 
Sbjct: 178 NF--LNEIVWKRTAAHSDAKQGAKFFGRQHDIIFYYCKSLNYIWNQQYIPYSDDYIKQNY 235

Query: 136 PMPNFRGRRFQNAHETL--IWASPSPKAKGYTFN---YDALKAANEDVQMRSDWLIPICS 190
            M +  GR FQ    T        S + KGYT +   Y A   AN +   +   +    S
Sbjct: 236 RMKDEDGRAFQTVDLTARKPGGDTSYEWKGYTLSSGRYWAYSKANMEKFEQEGKIYYTSS 295

Query: 191 GSERLR----------------------NKDGEKL-HPTQKPEALLSRILVSSTKPGDII 227
           G  RL+                      +  GE++ +PTQKPE LL RI+  S+ PGD++
Sbjct: 296 GLPRLKYYLDEMPGVSLQDMWTDVKLLSSHSGERVDYPTQKPETLLERIIQVSSNPGDLV 355

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            D F GSGT+ +VA KL R FIG ++    I   TKR+  +
Sbjct: 356 FDCFMGSGTTQSVAMKLGRRFIGADINLGAIQTTTKRLIKI 396


>gi|317178343|dbj|BAJ56131.1| adenine-specific DNA methylase [Helicobacter pylori F30]
          Length = 750

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 121/281 (43%), Gaps = 57/281 (20%)

Query: 23  IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +IK  +   L  L     ++++ I+ DPP+N          D + +D   DS        
Sbjct: 378 LIKSENYQALNSLKNRYKETINCIYIDPPFNTG-------SDFAYIDKFQDS-------- 422

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW---ILNDIVWRKSNP 136
            + +     L      L P G+ ++    +N   +G ML N  F      N+I+W  SN 
Sbjct: 423 TWLSLMHNRLELAYDFLSPQGSFYLHLD-NNANYLGRMLLNDIFGKENFRNEIIWYYSNK 481

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTF-------------------NYDALKAANED 177
           M N  G  F    ET++  S S K   Y F                   +   ++A +E+
Sbjct: 482 MAN-SGNSFAKNTETILNYSKSEK---YIFYRQKEPRSEPVLLSKREGRDGKNMRARDEN 537

Query: 178 VQMRSD----------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
            ++  +          W I I   +   R K+ E L  TQKPE LL RI+ +S+    II
Sbjct: 538 GKVIYELSHERYVDTLWDISIIGSTSTERVKNNENL--TQKPEKLLERIIQASSDENSII 595

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           LD F GSGT+ AVA KL+R +IGIEM + +  +   R+  V
Sbjct: 596 LDFFAGSGTTCAVAHKLKRKYIGIEMGEHFDSVILPRLKKV 636


>gi|298372695|ref|ZP_06982685.1| DNA (cytosine-5-)-methyltransferase [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298275599|gb|EFI17150.1| DNA (cytosine-5-)-methyltransferase [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 249

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 112/257 (43%), Gaps = 26/257 (10%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL---NGQLYRPDHSLVDAVTDSWDKFSS 77
           +KI   + +  L ++P  S+DL+   PPYN+ L   NG+       +V   +  ++ F  
Sbjct: 5   NKIYNESCLETLSRIPDNSIDLVITSPPYNMNLRIRNGKY--CSRQIVKEFSTKYENFDD 62

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLW-----VIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
               + + +      + +L+ +  ++     V GS   IF+I   +  L+ ++ + I+W 
Sbjct: 63  NIPIEEYYKFHFKVLKELLRTSNIIFYNIQIVTGSKRAIFKI---IGELSDYLKDIIIWD 119

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K    P    +   N    LI    +  A    F     K    D      WLI      
Sbjct: 120 KGYAQPAM-AQNVLNRRTELILIFDAKDAISRQFKKANFKRGTLD----DLWLIK----- 169

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
              R K     H    PE L+  I+ + +  GD+I DPF G+GT+  VAK L R+++G E
Sbjct: 170 ---RGKKITSSHSAVFPEELVKNIIENFSDEGDLIYDPFMGTGTTAYVAKLLNRNYLGSE 226

Query: 253 MKQDYIDIATKRIASVQ 269
           +   Y ++  KR++ ++
Sbjct: 227 LTSRYYEVINKRLSELK 243


>gi|168702226|ref|ZP_02734503.1| adenine specific DNA methyltransferase, putative [Gemmata
           obscuriglobus UQM 2246]
          Length = 256

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 111/267 (41%), Gaps = 45/267 (16%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I++G S++VL  LP+++ DL+ ADPPY+   +G   R D   +  V   + +  +   Y
Sbjct: 13  RIVQGESLAVLVDLPSEAFDLVLADPPYS---SGGFTRGDK--ISGVRKKYQQTGTRREY 67

Query: 82  DAFT------RA-------WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
            AF       RA       WL  C R  +P     V   +  +      +Q    W+   
Sbjct: 68  PAFAGDTRDQRAYGYWSALWLAQCLRAARPGTICGVFADWRQLPVTVDAIQA-GGWVYRG 126

Query: 129 IV-WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
           IV W K    P  +G RF ++ E L+W +  P+          L+ A             
Sbjct: 127 IVPWHKPGARPT-QG-RFTSSCEYLVWGTKGPR---------PLEGAP------------ 163

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
              G   +  K  +K H T KP  LL R LV       ++LDPF GS TS   A    R 
Sbjct: 164 -LPGFYSVGVKQADKHHLTGKPTELL-RELVKIAPASGLVLDPFAGSFTSAVAAALEGRR 221

Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNI 274
            + IE +  Y+ I  +R+A    L  +
Sbjct: 222 CLAIECEAPYVAIGRQRVADALGLAEV 248


>gi|170731541|ref|YP_001763488.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           cenocepacia MC0-3]
 gi|169814783|gb|ACA89366.1| DNA methylase N-4/N-6 domain protein [Burkholderia cenocepacia
           MC0-3]
          Length = 249

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 111/261 (42%), Gaps = 36/261 (13%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR---PDHSLVDAVTDSWDKFSS 77
           +++ + +++S++  LP   VDL+F DPPY+        R   P    +    D    +  
Sbjct: 11  NRVHQADALSIMRALPDACVDLVFTDPPYSSGGTTSASRSQAPSSKYIGG--DVKTVYPE 68

Query: 78  FEAYDAFTRAWLLACR-------RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
           F+      R+W   C        RV +    L     +  +  +   +Q   F      V
Sbjct: 69  FQHDSKDQRSWTFWCMTWLAEAYRVCRNEAHLACFVDWRQLPSLTDAIQAAGFTWRGVAV 128

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W K+      R   F    E L+WA+     KG                 R+D  +P   
Sbjct: 129 WDKTGGRTRPRAGGFAQQSEFLVWAT-----KGAV--------------RRADVYLPGVF 169

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
            SERL +    K H T+KP A L+R +V    PG ++LDPF GSGT  A AK+   ++IG
Sbjct: 170 -SERLAHP---KRHMTEKP-AQLARDVVRLAPPGGVVLDPFTGSGTFLAAAKEAGLNWIG 224

Query: 251 IEMKQDYIDIATKRIASVQPL 271
            E++  Y  +AT R+A +  L
Sbjct: 225 CELEPSYHQVATARLAELDVL 245


>gi|50954042|ref|YP_061330.1| DNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50950524|gb|AAT88225.1| DNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 285

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 129/281 (45%), Gaps = 39/281 (13%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNL------QLNGQLYRPDHSLVDAVTDSWDK 74
           D ++  +++SV+  LP  +  LI+ DPP+N       Q    +     S++     S+++
Sbjct: 10  DTVVCADNVSVVTALPDGAFRLIYLDPPFNTGRPQARQQTTSVRSEGGSVIGFKGRSYER 69

Query: 75  FSS--------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFW 124
                      F+ Y  F    L+   R+L  +GTL++   Y        +L  L     
Sbjct: 70  IKGDLLSFDDRFDDYWQFLEPRLIEAWRLLADDGTLYLHLDYREAHYAKVLLDALFGREC 129

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK------------ 172
            LN+IVW            R+   H+T++    +P+  GY F+  A+             
Sbjct: 130 FLNEIVWAYDYGAKA--KNRWPAKHDTILVYVKNPR--GYFFDSAAVDREPYMAPGLVTP 185

Query: 173 AANEDVQMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
              E  ++ +D W   I S + R   K G   +PTQKPE +L RI+ +S++ GD +LD F
Sbjct: 186 EKAELGKLPTDVWWHTIVSPTGR--EKTG---YPTQKPEGILRRIVQASSREGDWVLDFF 240

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI-ASVQPL 271
            GSGT+GAVA  L R F+ ++   D + +  +R  A+V P+
Sbjct: 241 AGSGTTGAVAAGLGRRFLLVDSSPDALAVMRERFAAAVSPV 281


>gi|325921368|ref|ZP_08183225.1| DNA modification methylase [Xanthomonas gardneri ATCC 19865]
 gi|325548126|gb|EGD19123.1| DNA modification methylase [Xanthomonas gardneri ATCC 19865]
          Length = 240

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 108/264 (40%), Gaps = 38/264 (14%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLV---------DA 67
           K+++++G+++++L  L A S D +  DPPY    L    +   P    V         D 
Sbjct: 2   KNQLLQGDALTILPTLEANSFDALITDPPYASGGLTAAARAKPPSQKYVQGGGAQLHADF 61

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
           V D  D+ S  +    +   WL  C RVLK    + +   +  +      LQ   F    
Sbjct: 62  VGDERDQRSHLK----WMHLWLSECARVLKDGAPVLLFTDWRQLPLTTDALQIAGFTWRG 117

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
             VW K+  +    GR F+N  E ++W S     KG                M  D   P
Sbjct: 118 ITVWDKTEGVRPQLGR-FRNQAEYIVWGS-----KG---------------NMPLDRRAP 156

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           +  G  R   +  +K H T KP  L+ R LV   + G  +LDPF GSGT+   A      
Sbjct: 157 VLPGVIRESVRKADKHHLTGKPTELM-RQLVRICEAGGRVLDPFAGSGTTLVAAYLEGFE 215

Query: 248 FIGIEMKQDYIDIATKRIASVQPL 271
            +GIEM   Y  +   R+   QPL
Sbjct: 216 SLGIEMIDQYAAVTRDRLEKTQPL 239


>gi|327198073|ref|YP_004306440.1| gp28 [Burkholderia phage KL3]
 gi|310657207|gb|ADP02321.1| gp28 [Burkholderia phage KL3]
          Length = 258

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 113/258 (43%), Gaps = 36/258 (13%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           +++ + +++++   LP +SVDL+F DPPY    L L+ +   P    ++  +D+   ++ 
Sbjct: 19  NQLHRVDALALARTLPDQSVDLVFTDPPYASGGLHLSARTRAPSQKYIN--SDTKAVYTD 76

Query: 78  FE-------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
           FE       A+  +  AWL  CRR +KP   L     +  +  +  ++Q     +    V
Sbjct: 77  FEGDNMDQRAWAFWCHAWLTECRRAMKPGALLVCFIDWRQLATLTDVVQAAGLTLRGIAV 136

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W K+      R   F    E ++WAS  P               NE     SD  +P   
Sbjct: 137 WDKTPGRTRPRRGGFAQQAEFIVWASRGPM--------------NE-----SDVYLPGVF 177

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
            +     K     H T+KP   L+R +V     G ++ D F GSGT    A++    ++G
Sbjct: 178 PTRLALPKQ----HVTEKPIE-LARDVVRLVPDGGVVCDLFAGSGTFLVAAREAGLQWVG 232

Query: 251 IEMKQDYIDIATKRIASV 268
            E  Q Y  IA+ R+A+V
Sbjct: 233 CETSQAYHAIASTRLAAV 250


>gi|326783389|ref|YP_004323665.1| DNA adenine methylase [Prochlorococcus phage Syn33]
 gi|310005336|gb|ADO99725.1| DNA adenine methylase [Prochlorococcus phage Syn33]
          Length = 258

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 120/283 (42%), Gaps = 64/283 (22%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA---- 80
           +G+ +S++  +  KS+DLI  DPPY                      WD+   F+     
Sbjct: 11  QGDCLSLMNDIQDKSIDLICCDPPYG----------------TTNIKWDEVLDFDTMWAQ 54

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN-PMPN 139
           YD           R+LKP G + + GS    F    +   L+ W   ++VW K+    P 
Sbjct: 55  YD-----------RILKPKGVIVLFGS--QPFSAQLICSKLD-WFRYELVWNKNKCGSPG 100

Query: 140 FRGRRFQNAHETLI-------------------WASPSPKAKGYTFNYD----ALKAANE 176
              +R    HE ++                   +A  S   +GY    +     +K   E
Sbjct: 101 LAKKRPMKTHENILIFYKEAGGTYNPQMEVGEPYARKSKSDEGYVGKKNDHGYGMKPRKE 160

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
                + +   I + S     +  +++HPTQKP  +L  ++ + +  GD +LD   GSG+
Sbjct: 161 FENKGTRYPKSILNISRDFSAQ--QQVHPTQKPVPMLEWLIKTYSNEGDTVLDNCMGSGS 218

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
           +G  A  L R FIG+E  ++Y +I+ +RI SV    +I++T L
Sbjct: 219 TGVAAINLNRKFIGMETNEEYFNISAERIGSV----SIDITKL 257


>gi|220913251|ref|YP_002488560.1| DNA methylase N-4/N-6 domain protein [Arthrobacter chlorophenolicus
           A6]
 gi|219860129|gb|ACL40471.1| DNA methylase N-4/N-6 domain protein [Arthrobacter chlorophenolicus
           A6]
          Length = 290

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 124/279 (44%), Gaps = 46/279 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS------ 76
           ++  ++   L  LP  +  LI+ DPP+N        R +  +V     S D+        
Sbjct: 14  VVHADNAQYLPTLPDGAFTLIYVDPPFNTGRAQS--RQETRMVANAGGSGDRVGFKGRSY 71

Query: 77  -----SFEAYD-AFTRAW------LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--N 122
                +   YD AF+  W      L+   R+L  +GTL++   Y  +     ML  +   
Sbjct: 72  DTIKGALHRYDDAFSDYWSFLEPRLVEAWRLLADDGTLYLHLDYREVHYAKVMLDAIFGR 131

Query: 123 FWILNDIVWRKSNPMPNFRGR-RFQNAHETLIWASPSPKAKGYTFN--------YDA--- 170
              LN+I+W         R R R+   H+ ++    +P    Y F+        Y A   
Sbjct: 132 ECFLNEIIWAYDY---GARARNRWPTKHDNILVYVKNPSK--YHFDNAEVDREPYMAPGL 186

Query: 171 -LKAANEDVQMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
              A  E  ++ +D W   I S + + +       +PTQKPE L+ R++ +S++PGD  L
Sbjct: 187 VTPAKRELGKLPTDVWWHTIVSPTGKEKTG-----YPTQKPEGLVRRVVSASSRPGDWCL 241

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           D F GSGT GAVA KL R F+ ++  Q  +DI  +R+ +
Sbjct: 242 DFFAGSGTLGAVAAKLGRKFVCVDQNQPAVDIMARRLGA 280


>gi|13786045|gb|AAK39545.1|AF355462_1 MlyIM [Micrococcus lylae]
          Length = 266

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 120/248 (48%), Gaps = 32/248 (12%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV----DAVTDSWDKFSSF 78
           I + + IS L+ LP  SVD++  DP Y+  +N +L      +V    D  T+    F+ F
Sbjct: 29  IQRNDVISFLKSLPDNSVDVLITDPAYS-GMNNKLKLGKGRIVGKYADKGTEQAKWFNEF 87

Query: 79  EAYDAFTRAWLLACRRVL-KPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           +  +     +L  C+RVL K  G ++++    ++  +G +++   F + N  VW K N  
Sbjct: 88  DDTEENYHQFLSECKRVLNKQTGHIYLMFDSFSLLTLGALVREY-FDVKNLXVWDKVNIG 146

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
               G  F+  HE +++A+          N +  K ++    +   W +      +R+ N
Sbjct: 147 ---MGHYFRRRHELILFAT----------NGNTRKVSSR--SLHDIWDV------KRIHN 185

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
                 +PTQKP  +  R+L +S+ PG  + DPF GSG++   A K   +F+G ++ +  
Sbjct: 186 SK----YPTQKPVEVFERMLEASSIPGFTVCDPFLGSGSAALAAIKYDCNFVGCDISEQS 241

Query: 258 IDIATKRI 265
            ++ ++RI
Sbjct: 242 FELCSERI 249


>gi|219586051|ref|YP_002456145.1| putative methylase [Escherichia coli]
 gi|226201029|ref|YP_002756641.1| DNA methylase family protein [Escherichia coli]
 gi|218931634|gb|ACL12407.1| hemagglutinin-associated protein [Escherichia coli]
 gi|219881658|gb|ACL52028.1| DNA methylase family protein [Escherichia coli]
          Length = 227

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 108/254 (42%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPY---LVGFRDRQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R  +  +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHHAGQQRLAAVQ 209


>gi|325963996|ref|YP_004241902.1| DNA modification methylase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323470083|gb|ADX73768.1| DNA modification methylase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 290

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 124/295 (42%), Gaps = 78/295 (26%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNL------------------------------Q 52
           ++  ++   L  LP  +  LI+ DPP+N                                
Sbjct: 14  VVHADNADFLPSLPDGAFTLIYVDPPFNTGRTQTRQQTTMVVNADGTGDRVGFKGRSYDT 73

Query: 53  LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
           + G L+R D    DA +D W          +F    L+   R+L  +GTL++   Y  + 
Sbjct: 74  IKGALHRYD----DAFSDYW----------SFLEPRLVEAWRLLADDGTLYLHLDYREVH 119

Query: 113 RIGTMLQNL--NFWILNDIVWRKSNPMPNFRGR---RFQNAHETLIWASPSPKAKGYTFN 167
               ML  +      LN+I+W       ++  R   R+   H+ ++    +P      ++
Sbjct: 120 YAKVMLDAIFGRECFLNEIIWAY-----DYGARAKNRWPTKHDNILVYVKNPA----KYH 170

Query: 168 YDALKAANEDV--------------QMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEAL 212
           +D+ +   E                ++ +D W   I S + + +       +PTQKPE L
Sbjct: 171 FDSAEVDREPYMAPGLVTPEKRELGKLPTDVWWHTIVSPTGKEKTG-----YPTQKPEGL 225

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           + R++ +S++PGD  LD F GSGT GAVA ++ R F+ ++  Q  ID+  KR+ +
Sbjct: 226 VRRVVAASSRPGDWCLDFFAGSGTLGAVAARMDRKFVCVDQNQPAIDVMAKRLGA 280


>gi|78046666|ref|YP_362841.1| site-specific DNA-methyltransferase (cytosine-N(4)-specific)
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78035096|emb|CAJ22741.1| Site-specific DNA-methyltransferase (cytosine-N(4)-specific)
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|82504508|gb|ABB80542.1| XveII methyltransferase [Xanthomonas euvesicatoria]
          Length = 299

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 125/315 (39%), Gaps = 81/315 (25%)

Query: 7   LAINENQNSIFEWKD---------KIIKGNSISVLEKLPAKSVDLIFADPPY----NLQL 53
           L +NEN+       D         +++ G++  VL  +  KS       PPY    +  +
Sbjct: 3   LIVNENEPDTSTHTDEPIQEPARGRLVVGDARKVLAGMADKSFQCCITSPPYWGLRDYGV 62

Query: 54  NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV-IGSYHNI- 111
           +GQ+                   + EAY     A     RR L+ +GTLW+ IG      
Sbjct: 63  DGQI---------------GAEPTLEAYIEDLVALFREVRRTLRDDGTLWLNIGDGFTSG 107

Query: 112 -----------------------------------FRIGTMLQNLNFWILNDIVWRKSNP 136
                                              +R+   LQ   +++  DI+W+K N 
Sbjct: 108 GRTWRAPDKKNKGRAMEYRAPTPDGLKPKDLIGVPWRLAIALQADGWYLRADIIWQKPNC 167

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM----RSDWLIPICSGS 192
            P     R   +HE +   +   K++ Y +N DA+K    D +     RS W I     +
Sbjct: 168 QPESVKDRPTRSHEYVFLLT---KSERYYYNSDAVKELTADGKHTKNRRSVWAI----NT 220

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           E          H    P  L+   + + +K  +++LDPFFGSGT G VA+   R F+GIE
Sbjct: 221 EPYGGN-----HFAVFPTELVRLCMEAGSKKEEVVLDPFFGSGTVGQVARDNGRKFVGIE 275

Query: 253 MKQDYIDIATKRIAS 267
           +  DY ++A KR+AS
Sbjct: 276 LSPDYAELARKRLAS 290


>gi|300837035|ref|YP_003754089.1| hypothetical protein pKP048_p096 [Klebsiella pneumoniae]
 gi|299474839|gb|ADJ18663.1| hypothetical protein [Klebsiella pneumoniae]
          Length = 233

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 107/255 (41%), Gaps = 48/255 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I GN I V+   P ++VDLI  DPPY   L G   R    +   VTD W + ++ E Y
Sbjct: 3   RFILGNCIDVMRGFPDRAVDLIVTDPPY---LVGFKDRQGRQIAGDVTDEWLQPATLEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK---SNPMP 138
                       RVLK +  +     ++ + R     +   F+ +  +V+ K   SN   
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKAAGFYAVGQLVFTKNYASNRRN 107

Query: 139 NFRGRRFQN-AHE---TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
               R F +  HE    L    P P  K              DV       +P       
Sbjct: 108 ARARRGFVDYCHEGAYVLAKGRPVPPLKPL-----------PDV-------LPF------ 143

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                G  LHPTQKP   L  ++ S + PG I+LDPF GSG++   A +  R +IGIEM 
Sbjct: 144 --PYTGNTLHPTQKPVEALQPLIESFSAPGAIVLDPFAGSGSTCVAAYRAGRRYIGIEML 201

Query: 255 QDYIDIATKRIASVQ 269
             Y    T+R+A++ 
Sbjct: 202 AQYHRAGTERLAAMH 216


>gi|238027943|ref|YP_002912174.1| Csp231I DNA methyltransferase [Burkholderia glumae BGR1]
 gi|237877137|gb|ACR29470.1| Csp231I DNA methyltransferase [Burkholderia glumae BGR1]
          Length = 332

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 114/282 (40%), Gaps = 39/282 (13%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY-------RPDHSLVDAVTDSWDKFSSF 78
           GN++  + K+P  SV LI  DPPY +   G  +       R D + V        KF   
Sbjct: 47  GNALDEMRKIPDASVHLIATDPPYFIDGMGSDWNKTSLRTRTDKAGVVGSLPVGMKFDPA 106

Query: 79  EA--YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR---- 132
           +A  +  F         R+LKP G            R+    ++  F I + + W     
Sbjct: 107 QARAFQEFMEPIAKEAFRILKPGGFFIAFSQARLYHRLAVAAEDAGFEIRDMLAWHYEGQ 166

Query: 133 -------------------KSNPMPNFRGRR---FQNAHETLIWASPSPKAKGYTFNYDA 170
                              K + + +  GR+    +   E ++ A   P+   +  N+  
Sbjct: 167 AKAFSMNHFIAKMKISDADKQHLIDSIGGRKTPQLKPQMEPMVMAQ-KPRVGTFVENWKQ 225

Query: 171 LKAANEDVQMRSDWLIP--ICSGSERLRNKDGE-KLHPTQKPEALLSRILVSSTKPGDII 227
            +    D     D   P  +   ++  R++ G    H T KP  L+  ++   + PG ++
Sbjct: 226 FETGLVDTTASLDGKFPGNVMDVAKPSRDEKGAGNEHLTVKPVLLMEHLIRLFSIPGQVV 285

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           LDPF GSGT+G  A    R FIG+E+  DY  IA+KRIA+ +
Sbjct: 286 LDPFLGSGTTGVAAINTGREFIGVEIDPDYARIASKRIAAAR 327


>gi|170017230|ref|YP_001728149.1| site-specific DNA-methyltransferase [Leuconostoc citreum KM20]
 gi|169804087|gb|ACA82705.1| Site-specific DNA-methyltransferase [Leuconostoc citreum KM20]
          Length = 610

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 131/295 (44%), Gaps = 63/295 (21%)

Query: 18  EWKDKIIKGNSISVLEKL-------------PAKSVDLIFADPPYNLQLNGQLYRPDHSL 64
           EW +KII G+++ VL+ L              +  V +++ DPP+  + + Q    D   
Sbjct: 77  EWINKIIFGDNLQVLKTLIEWKKDGLLKNKDGSDGVRVVYIDPPFASKQDFQ--NKDQKA 134

Query: 65  VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--- 121
                   DK    E Y  + R  L+  R +L  +G ++V   +H +  +  ++  +   
Sbjct: 135 YS------DKLKGVE-YLEWLRKRLILLREILADDGNIFVHLDWHKMHYVKVLMDEIFGE 187

Query: 122 -NFWILNDIVWRKSNPMPNFRG--RRFQNAHETLIWASPSPK-------AKGYT------ 165
            NF  +NDIVW         RG    F   H+ +++ S   K        K YT      
Sbjct: 188 ANF--VNDIVWSYRTG----RGGNSEFNKQHDDILFYSKQQKHKFNPQREKSYTKSKNRK 241

Query: 166 ---FNY-DALKAANEDVQ-------MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
               NY  A     ED Q       MR  W IP  +   + R       +PTQKPEALL 
Sbjct: 242 PGLTNYGKATTEFFEDAQGVYRWSSMRDVWDIPYINSQSKERVG-----YPTQKPEALLE 296

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            I+ S++  GD++LD F GSG + AVA+K+ R +I  ++ +  I +  KRI +++
Sbjct: 297 IIIGSASDAGDLVLDLFGGSGVTAAVAEKMDRRWITGDVGKLSIYVIQKRILALE 351


>gi|194430357|ref|ZP_03062846.1| DNA methylase family protein [Escherichia coli B171]
 gi|194411606|gb|EDX27939.1| DNA methylase family protein [Escherichia coli B171]
          Length = 227

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 107/258 (41%), Gaps = 61/258 (23%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPY---LVGFRDRQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                       RVLK +  +     ++ + R  +  +N  F ++  +V           
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLV----------- 96

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK--- 198
                                 +T NY + KAA   V  R +    +  G  RL  K   
Sbjct: 97  ----------------------FTKNYTS-KAAY--VGYRHECAYILAKGRPRLPQKPLP 131

Query: 199 -------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
                   G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGI
Sbjct: 132 DVLGWKYSGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGI 191

Query: 252 EMKQDYIDIATKRIASVQ 269
           E+ + Y     +R+A+VQ
Sbjct: 192 ELLEQYHRAGQQRLAAVQ 209


>gi|191166264|ref|ZP_03028097.1| DNA methylase family protein [Escherichia coli B7A]
 gi|190903691|gb|EDV63407.1| DNA methylase family protein [Escherichia coli B7A]
          Length = 227

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 106/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPY---LVGFRDRSGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPALPQKPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|162417875|ref|YP_001604638.1| putative methylase [Yersinia pestis Angola]
 gi|162350847|gb|ABX84796.1| DNA methylase [Yersinia pestis Angola]
          Length = 225

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 106/249 (42%), Gaps = 43/249 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I+GN + ++   P  +VD I  DPPY   + G   R   ++    TD W + +  E Y
Sbjct: 3   RFIQGNCVHIMSGFPDNAVDFILTDPPY---IVGFRDRQGRTIAGDKTDEWLQPACHEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYTSKAAY 107

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G R + A+       P P+              N+ +  +                  G
Sbjct: 108 VGYRHECAYILAKGRPPLPQ-----------NPLNDVIAWKYS----------------G 140

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            + HPT+KP   L  ++ S T PG I+LDPF GSG++   A +  R +IGIE+ + Y   
Sbjct: 141 NRHHPTEKPVTSLQPLIESFTHPGAIVLDPFAGSGSTCVAALQAGRRYIGIELLEQYHRA 200

Query: 261 ATKRIASVQ 269
             +R+A+V+
Sbjct: 201 GQQRLAAVR 209


>gi|317054701|ref|YP_004119768.1| YfbB [Escherichia coli]
 gi|284433229|gb|ADB84968.1| YfbB [Escherichia coli]
          Length = 228

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 109/249 (43%), Gaps = 43/249 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPY---LVGFRDRQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R  +  +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G R + A+   I A  SP                     R    +P   G +      G
Sbjct: 108 VGYRHECAY---ILAKGSPA--------------------RPRNPLPDVLGWK----YSG 140

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ + Y   
Sbjct: 141 NRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRA 200

Query: 261 ATKRIASVQ 269
             +R+A+VQ
Sbjct: 201 GQQRLAAVQ 209


>gi|213615498|ref|ZP_03371324.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 211

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 97/197 (49%), Gaps = 19/197 (9%)

Query: 104 VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
           ++ S  N+  I    + L F I + IVW   +     + + F + +E ++    +PK+  
Sbjct: 1   IMNSTENMPYIDLKCRTL-FTIKSRIVWSYDSSGVQAK-KYFGSMYEPILMMVKNPKS-- 56

Query: 164 YTFNYDAL------KAANEDVQMRSDWLIPICSGS--------ERLRN-KDGEKLHPTQK 208
           YTFN DA+       A    +  R +   P              R+R   D  + HPTQK
Sbjct: 57  YTFNRDAILVETTTGAKRALIDYRKNPPQPYNQKKVPGNVWSFPRVRYLMDEYENHPTQK 116

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           P ALL RI+++S+ P D +LDPF GS T+GAVA    R FIGIE+  +Y+ +  +R++  
Sbjct: 117 PSALLKRIILASSNPSDTVLDPFAGSFTTGAVAAASGRKFIGIELNNEYVKMGLRRLSVT 176

Query: 269 QPLGNIELTVLTGKRTE 285
                 EL  +  ++T+
Sbjct: 177 SHYSENELAKVKKRKTQ 193


>gi|305667807|ref|YP_003864281.1| DNA methylase family protein [Escherichia coli]
 gi|304655556|emb|CBM42214.1| DNA methylase family protein [Escherichia coli]
          Length = 227

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 108/254 (42%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPY---LVGFRDRQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R  +  +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|209885571|ref|YP_002289428.1| DNA methylase [Oligotropha carboxidovorans OM5]
 gi|209873767|gb|ACI93563.1| DNA methylase [Oligotropha carboxidovorans OM5]
          Length = 252

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 102/257 (39%), Gaps = 46/257 (17%)

Query: 36  PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL-LACRR 94
           P    DLI ADPPY           D SL               A+D     WL LAC  
Sbjct: 19  PRGPFDLILADPPYG----------DTSL---------------AWDRRVDGWLRLACD- 52

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL-- 152
            LKP+G+LW  GS            +       +IVW K N   +F   RF+  HE +  
Sbjct: 53  ALKPSGSLWGFGSLRCFMATANQFADAGLRYAQEIVWEKQNGT-SFHADRFKRVHELVAQ 111

Query: 153 IWASPSPKAKGYTFNYDALKAANEDV--QMRSDWLIPIC-------SGSERL-------R 196
            + + +P +  Y        A    V  +MR      I         G  RL       R
Sbjct: 112 FYRADAPWSAVYNDVQTTPDATARTVRRKMRPPHTGHIDVGHYVSEDGGPRLMRSVIYAR 171

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           N  G  +H T+KP  L+  ++ +S   G ++ D F GSG +G   +   R ++G E+   
Sbjct: 172 NCHGTAIHSTEKPSGLIEILIRTSCPQGGLVGDWFAGSGAAGEACRLAGRRYLGCEIDAG 231

Query: 257 YIDIATKRIASVQPLGN 273
             ++A  RIASV PL  
Sbjct: 232 MAELARARIASVLPLAE 248


>gi|194337217|ref|YP_002019011.1| DNA methylase N-4/N-6 domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309694|gb|ACF44394.1| DNA methylase N-4/N-6 domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 292

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 121/293 (41%), Gaps = 63/293 (21%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            E K  +  G+   +L+ LP  SVDLIF  PPY  Q   Q Y   H              
Sbjct: 1   METKTDLYLGDCTQLLKTLPDDSVDLIFTSPPYADQ-RKQTYGGFHP------------- 46

Query: 77  SFEAYDAFTRAWL---LACRRVLKPNGTLW------VIGSYHNIFRIGTMLQNLN---FW 124
                D +   +L   L   RVLKP GT        V+    + + +  +L+      FW
Sbjct: 47  -----DDYVEWFLPISLQLLRVLKPTGTFVLNIKEKVVNGERSTYVMELILEMRKQGWFW 101

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA------------LK 172
              + +W K N  P     RF+++ E LI  +   K+K +  +  A            LK
Sbjct: 102 T-EEFIWHKKNCYPGKWPNRFRDSWERLIQFN---KSKHFYMDQKAVMVPMGDWSKTRLK 157

Query: 173 AANEDVQMR-------------SDWL---IPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
             +E  + R             S+WL   +   +    L  +   K H    PE L    
Sbjct: 158 NLSETDKTRDESKVGSGFGKNISNWLDREMAYPTNVLHLATECNNKKHSAAFPEGLPEWF 217

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           +   TK GD +LDPF GSGT+ AVA+++RR+ IGIE+  +Y D+    +  V+
Sbjct: 218 IKLFTKEGDTVLDPFMGSGTTNAVAQRMRRNSIGIEIVPEYYDMVKTELKPVE 270


>gi|56404028|ref|NP_858331.2| putative methylase [Shigella flexneri 2a str. 301]
 gi|309783591|ref|ZP_07678241.1| DNA methylase family protein [Shigella dysenteriae 1617]
 gi|56383106|gb|AAL72431.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|281603957|gb|ADA76940.1| hypothetical protein SFxv_5045 [Shigella flexneri 2002017]
 gi|308928487|gb|EFP73944.1| DNA methylase family protein [Shigella dysenteriae 1617]
 gi|333006557|gb|EGK26058.1| DNA methylase family protein [Shigella flexneri K-218]
 gi|333017307|gb|EGK36626.1| DNA methylase family protein [Shigella flexneri K-304]
 gi|333017399|gb|EGK36715.1| DNA methylase family protein [Shigella flexneri K-227]
          Length = 227

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 108/254 (42%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPY---LVGFRDRQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R  +  +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|301166968|emb|CBW26547.1| putative methylase [Bacteriovorax marinus SJ]
          Length = 260

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 120/260 (46%), Gaps = 37/260 (14%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNL-----QLNGQLYRPDHSLV--DAVTDSWD 73
           D  I  N  S+++    +   +++ADPPY L     +  G L  P  + +  +AVT    
Sbjct: 23  DSTIGSNYESIMQ---GEKAQMLYADPPYCLLVRRNKKTGALRDPKKAKINHEAVT---- 75

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF-WILNDIVWR 132
           ++ + +AY  FTR WL    + +  +GTL +  +Y  I  I  +   L +     + +W 
Sbjct: 76  RYENTKAYKYFTRNWLSEAVKHISEDGTLVIWTNYLGIKPIKDVALELGYEHFYGEFLWG 135

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K     N         +E  +  S  PK +           +N D+ ++  W I I    
Sbjct: 136 KLAKETNSGNETNVRLYEVALVFSKIPKKE----------LSNSDLPLQ--WSI-ITKYD 182

Query: 193 ERLRNKDGEKL----HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
           E     +GE      HP  KP + L  ++ + T+PGD +LDPF GSG++ A   +L R  
Sbjct: 183 E-----EGEATKWDNHPNHKPFSSLEPLIRNFTRPGDRVLDPFTGSGSTPAACIQLGRKI 237

Query: 249 IGIEMKQDYIDIATKRIASV 268
            GIE+++ + DI+ +RIA +
Sbjct: 238 SGIELREHWADISQRRIAEL 257


>gi|323974648|gb|EGB69764.1| DNA methylase [Escherichia coli TW10509]
          Length = 227

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 107/258 (41%), Gaps = 61/258 (23%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPY---LVGFRDRQGRTIAGDKTDDWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                       RVLK +  +     ++ + R  +  +N  F ++  +V           
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLV----------- 96

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK--- 198
                                 +T NY + KAA   V  R +    +  G  RL  K   
Sbjct: 97  ----------------------FTKNYTS-KAAY--VGYRHECAYILAKGRPRLPQKPLP 131

Query: 199 -------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
                   G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGI
Sbjct: 132 DVLGWKYSGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGI 191

Query: 252 EMKQDYIDIATKRIASVQ 269
           E+ + Y     +R+A+VQ
Sbjct: 192 ELLEQYHRAGQQRLAAVQ 209


>gi|226201122|ref|YP_002756736.1| putative methylase [Escherichia coli]
 gi|260763836|ref|YP_003237875.1| putative adenine DNA methyltransferase [Escherichia coli O26:H11
           str. 11368]
 gi|284000191|ref|YP_003377878.1| DNA modification methylase [Escherichia coli O26:H-]
 gi|219881751|gb|ACL52121.1| putative methylase [Escherichia coli]
 gi|257757261|dbj|BAI28762.1| putative adenine DNA methyltransferase [Escherichia coli O26:H11
           str. 11368]
 gi|283445131|gb|ADB20475.1| DNA modification methylase [Escherichia coli O26:H-]
 gi|323157010|gb|EFZ43142.1| DNA methylase family protein [Escherichia coli EPECa14]
 gi|325699424|gb|ADZ45155.1| DNA modification methylase [Escherichia coli]
          Length = 227

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 110/278 (39%), Gaps = 63/278 (22%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY   L G   R   ++   V D W + +S E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPY---LVGFRDRSGRTIAGDVNDDWLQPASNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                       RVLK +  +     +H I R   +     F +   +V+ K        
Sbjct: 60  ------------RVLKKDALMVSFYGWHRIDRFMAVWIRAGFSVAGHLVFTK-------- 99

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS-ERLRNK-- 198
                                    NY +  A    V  R +    +  GS  R RN   
Sbjct: 100 -------------------------NYTSKSAY---VAYRHECAYILAKGSPARPRNPLP 131

Query: 199 -------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
                   G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGI
Sbjct: 132 DVLGWKYSGNRHHPTEKPVTSLQPLIESFTHPNSIVLDPFAGSGSTCVAALQSGRRYIGI 191

Query: 252 EMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
           E+ + Y     +R+A+VQ    ++       R EP  A
Sbjct: 192 ELLEQYHRAGQQRLAAVQ--RAMQQGAANDNRFEPEAA 227


>gi|188574255|ref|YP_001919391.1| DNA methylase [Escherichia coli 53638]
 gi|188501430|gb|ACD54564.1| DNA methylase [Escherichia coli 53638]
          Length = 227

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 106/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPY---LVGFRDRQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPALPQKPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|21243368|ref|NP_642950.1| site-specific DNA-methyltransferase [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21108915|gb|AAM37486.1| site-specific DNA-methyltransferase [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 233

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 108/258 (41%), Gaps = 35/258 (13%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRP------DHSLVDAVTD 70
           K+++++G+++++L  L A S D +  DPPY    L    +   P      D    D V D
Sbjct: 2   KNQLLQGDALTILPTLEANSFDALITDPPYASGGLTAAARARPPSTKYCRDGGHADFVGD 61

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
             D+ S  +    +   WL  C RVLK    + +   +  +      LQ   F      V
Sbjct: 62  ERDQRSHLK----WMHLWLSECARVLKDGAPVLLFTDWRQLTLTTDALQIAGFTWRGITV 117

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W K+  +    GR F+N  E ++W S     KG                M  D   P+  
Sbjct: 118 WDKTEGVRPQLGR-FRNQAEYIVWGS-----KG---------------NMPLDRRAPVLP 156

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           G  R   +  +K H T KP  L+ R LV   + G  +LDPF GSGT+   A+      +G
Sbjct: 157 GVIRESVRKADKHHLTGKPTELM-RQLVRICEAGGRVLDPFAGSGTTLVAAQLEGFEAVG 215

Query: 251 IEMKQDYIDIATKRIASV 268
           IEM   Y  +   R+ ++
Sbjct: 216 IEMTDQYATVTRDRLTAL 233


>gi|323974517|gb|EGB69644.1| DNA methylase [Escherichia coli TW10509]
          Length = 227

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 108/254 (42%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPY---LVGFRDRQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R  +  +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAAFQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|9507765|ref|NP_061431.1| putative methylase [Plasmid F]
 gi|300824693|ref|ZP_07104799.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 119-7]
 gi|81625266|sp|Q9S4X2|YUBD_ECOLI RecName: Full=Putative methylase yubD
 gi|5702169|gb|AAD47178.1| putative methyltransferase [Escherichia coli]
 gi|8918875|dbj|BAA97922.1| yfeA [Plasmid F]
 gi|300522783|gb|EFK43852.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 119-7]
 gi|324115775|gb|EGC09709.1| DNA methylase [Escherichia coli E1167]
          Length = 227

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 105/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I+G+ + V+   P  +VD I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFIQGDCVRVMATFPGNAVDFILTDPPY---LVGFRDRQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPALPQKPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|326939606|gb|AEA15502.1| DNA methylase N-4/N-6 [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 326

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 128/334 (38%), Gaps = 103/334 (30%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           +K+  G+ + VL+  P   V  +   PPY    +  ++GQ+                  +
Sbjct: 4   NKVYPGHCLDVLKTFPDNFVSTVVTSPPYWGLRDYGVDGQI---------------GLEA 48

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWV----------------------------IGSY 108
           + E Y +   +     +RVLK +GTLW+                            +G  
Sbjct: 49  TVEEYVSNLVSVFREVKRVLKDDGTLWLNLGDVYAGSGRGRNADGKGNPGNNHFQSVGQV 108

Query: 109 HNI-------------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAH 149
             I                   +R+   LQ   +++  DIVW K N MP     R   +H
Sbjct: 109 TGIVSITKSVDGLKPKDLIGLPWRVAFALQQDGWYLRQDIVWNKPNAMPESVRDRPTKSH 168

Query: 150 ETLIWASPSPKAKGYTFNYDALKA----ANEDVQMRSDWLIPICS--------------- 190
           E +   S SPK   Y ++++++K       +DV+       P                  
Sbjct: 169 EYIFLLSKSPK---YYYDHESIKEPAVYGQQDVRGSEGAFGPPQRAKRTSKEKGSFNGKY 225

Query: 191 GSERLR---------------NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
           G E  R                K  ++ H    PEAL+   +++      I++DPFFGSG
Sbjct: 226 GHEAFRAIRDKRNKRSVWTVATKPLKEAHFATFPEALIEPCILAGAPAEGIVMDPFFGSG 285

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           T G VA K  R+FIGIE+   YI+I+ + +++VQ
Sbjct: 286 TVGRVAAKHNRNFIGIELNPGYIEISDRLLSNVQ 319


>gi|218960689|ref|YP_001740464.1| DNA methylase N-4/N-6 [Candidatus Cloacamonas acidaminovorans]
 gi|167729346|emb|CAO80257.1| DNA methylase N-4/N-6 [Candidatus Cloacamonas acidaminovorans]
          Length = 403

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 120/273 (43%), Gaps = 52/273 (19%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           ++ D+I+ G+S  +L +LP   +DLIF  PPYN  L+ +    D          W+K+  
Sbjct: 157 KYMDRIVCGDSKIILSQLPNNCIDLIFTSPPYNFGLDYEENEDDQH--------WEKY-- 206

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWV---------IGSYHNIFRIGTMLQNLNFWILND 128
           FE   A        C RVLK  G   +         I ++H I     ++Q    W   +
Sbjct: 207 FETLFAI----FDECIRVLKYGGRFIINVQPLFSDYIPTHHII--SNYLMQKKLIW-KGE 259

Query: 129 IVWRKSNPMPNFRGRRFQNAHETL--IWASPSPKAKGYTFNY------DALKAANEDVQM 180
           I+W K+N           N   T    W SPS     YT+ +        LK   +D ++
Sbjct: 260 ILWEKNN----------YNCKYTAWGSWKSPSNPYLKYTWEFIEIFCKGTLKKIGDDKKI 309

Query: 181 R------SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
                    W+    S +   R K+    HP   PE L ++++   +   DI+LDPF G 
Sbjct: 310 DISGDEFKKWVYAKWSIAPERRMKEFN--HPAMFPEELATKVIKLFSYQEDIVLDPFNGV 367

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           GT+  VAK  +R ++GI++  +Y   A +R++S
Sbjct: 368 GTTTLVAKLNKRHYLGIDISSEYCSKAEERLSS 400


>gi|331675763|ref|ZP_08376481.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H591]
 gi|331076537|gb|EGI47813.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H591]
          Length = 227

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 108/254 (42%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++DLI  DPPY   L G   R   ++    TD W + +  E +
Sbjct: 3   RFVLGNCIDVMARIPDNAIDLILTDPPY---LVGFRDRSGRTIAGDKTDEWLQPACNEMF 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|209921999|ref|YP_002296072.1| putative methylase [Escherichia coli SE11]
 gi|209915177|dbj|BAG80250.1| conserved hypothetical protein [Escherichia coli SE11]
          Length = 227

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 107/254 (42%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPY---LVGFRDRSGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|157149435|ref|YP_001451479.1| putative methylase [Escherichia coli E24377A]
 gi|157076602|gb|ABV16313.1| DNA methylase family protein [Escherichia coli E24377A]
          Length = 227

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 108/254 (42%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++DLI  DPPY   L G   R   ++    TD W + +  E +
Sbjct: 3   RFVLGNCIDVMARIPDNAIDLILTDPPY---LVGFRDRSGRTIAGDKTDEWLQPACNEMF 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|10955304|ref|NP_052645.1| putative methylase [Escherichia coli O157:H7 str. Sakai]
 gi|75994520|ref|YP_325634.1| putative methylase [Escherichia coli O157:H7 EDL933]
 gi|149930817|ref|YP_001294717.1| putative methylase [Escherichia coli]
 gi|168752517|ref|ZP_02777539.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4113]
 gi|168757287|ref|ZP_02782294.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4401]
 gi|168765074|ref|ZP_02790081.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4501]
 gi|168769248|ref|ZP_02794255.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4486]
 gi|168776734|ref|ZP_02801741.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4196]
 gi|168783023|ref|ZP_02808030.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4076]
 gi|168789946|ref|ZP_02814953.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC869]
 gi|168802817|ref|ZP_02827824.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC508]
 gi|208811329|ref|ZP_03253089.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4206]
 gi|208817433|ref|ZP_03258462.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4045]
 gi|208823371|ref|ZP_03263688.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4042]
 gi|209395564|ref|YP_002268432.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4115]
 gi|217329930|ref|ZP_03446005.1| DNA methylase family protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|254667492|ref|YP_003082178.1| hypothetical protein ECSP_6044 [Escherichia coli O157:H7 str.
           TW14359]
 gi|261225668|ref|ZP_05939949.1| hypothetical protein EscherichiacoliO157_13847 [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261257877|ref|ZP_05950410.1| hypothetical protein EscherichiacoliO157EcO_18978 [Escherichia coli
           O157:H7 str. FRIK966]
 gi|37695805|gb|AAR00467.1|AF401292_70 w0053 [Escherichia coli]
 gi|3337036|dbj|BAA31795.1| hemagglutinin-associated protein [Escherichia coli O157:H7 str.
           Sakai]
 gi|3822188|gb|AAC70142.1| hypothetical protein [Escherichia coli O157:H7]
 gi|187767953|gb|EDU31797.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4196]
 gi|188013662|gb|EDU51784.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4113]
 gi|188999527|gb|EDU68513.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4076]
 gi|189355640|gb|EDU74059.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4401]
 gi|189361686|gb|EDU80105.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4486]
 gi|189365051|gb|EDU83467.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4501]
 gi|189370557|gb|EDU88973.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC869]
 gi|189375299|gb|EDU93715.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC508]
 gi|208729959|gb|EDZ79176.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4206]
 gi|208730610|gb|EDZ79309.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4045]
 gi|208736966|gb|EDZ84651.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4042]
 gi|209157019|gb|ACI34453.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4115]
 gi|217317161|gb|EEC25594.1| DNA methylase family protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|254595844|gb|ACT75204.1| hypothetical protein ECSP_6044 [Escherichia coli O157:H7 str.
           TW14359]
 gi|320188691|gb|EFW63352.1| Adenine-specific methyltransferase [Escherichia coli O157:H7 str.
           EC1212]
 gi|326337217|gb|EGD61053.1| Adenine-specific methyltransferase [Escherichia coli O157:H7 str.
           1125]
 gi|326347713|gb|EGD71431.1| Adenine-specific methyltransferase [Escherichia coli O157:H7 str.
           1044]
          Length = 227

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 105/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I+G+ + V+  +P   VD I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFIQGDCVRVMATIPGNGVDFILTDPPY---LVGFRDRQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPALPQKPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|302595326|ref|YP_003829041.1| putative methylase [Escherichia coli]
 gi|302310062|gb|ADL13935.1| YubD [Escherichia coli]
          Length = 227

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 105/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I+G+ + V+   P  +VD I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFIQGDCVRVMATFPGNAVDFILTDPPY---LVGFRDRQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPALPQKPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|58383244|ref|YP_194814.1| putative methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|168758413|ref|ZP_02783420.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4401]
 gi|168770710|ref|ZP_02795717.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4486]
 gi|187736750|ref|YP_001816488.1| putative methylase [Escherichia coli 1520]
 gi|194433597|ref|ZP_03065874.1| DNA methylase family protein [Shigella dysenteriae 1012]
 gi|256367716|ref|YP_003108273.1| DNA methylase [Escherichia coli]
 gi|291289357|ref|YP_003517689.1| adenine-specific methyltransferase [Klebsiella pneumoniae]
 gi|302595375|ref|YP_003829237.1| DNA methylase [Escherichia coli]
 gi|302595494|ref|YP_003829112.1| DNA methylase [Escherichia coli]
 gi|309797313|ref|ZP_07691707.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 145-7]
 gi|37962723|gb|AAR05670.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|62550783|emb|CAH64706.1| hypothetical protein [uncultured bacterium]
 gi|172051332|emb|CAP07674.1| unnamed protein product [Escherichia coli]
 gi|189354777|gb|EDU73196.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4401]
 gi|189360471|gb|EDU78890.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4486]
 gi|194418189|gb|EDX34281.1| DNA methylase family protein [Shigella dysenteriae 1012]
 gi|228480653|gb|ACQ41980.1| DNA methylase [Escherichia coli]
 gi|290792318|gb|ADD63643.1| adenine-specific methyltransferase [Klebsiella pneumoniae]
 gi|302310135|gb|ADL14006.1| YhdJ [Escherichia coli]
 gi|302310263|gb|ADL14131.1| YhdJ [Escherichia coli]
 gi|308119060|gb|EFO56322.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 145-7]
 gi|327536645|gb|AEA95477.1| adenine-specific methyltransferase [Salmonella enterica subsp.
           enterica serovar Dublin]
          Length = 227

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 107/254 (42%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMTRIPDNAIDFILTDPPY---LVGFRDRSGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|299136441|ref|ZP_07029624.1| DNA methylase N-4/N-6 domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298600956|gb|EFI57111.1| DNA methylase N-4/N-6 domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 278

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 121/290 (41%), Gaps = 63/290 (21%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYN--------------------LQLNGQLYRP 60
           ++I+   +++ L  LP  SV LI+ DPP+N                    +   G+ YR 
Sbjct: 2   NRILHRENLTALRSLPDASVQLIYIDPPFNTGTTQRRARMKTVRDDAGDRIGFGGKRYRT 61

Query: 61  DH-SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
           +  ++    TD       F+ Y  F R  ++   RVL   G+L+       +     ML 
Sbjct: 62  EKLAIAPNYTDR------FDDYLGFLRPRMIEAHRVLSATGSLFFHVDPREVHYCKIMLD 115

Query: 120 NL--------NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
            +             N+I+W       +   +R+   H+ ++W +  PK   YTFN +A 
Sbjct: 116 EVFTTPGVSGRACFQNEIIWAYDYGARS--TKRWPAKHDNILWYTKDPK--DYTFNLEA- 170

Query: 172 KAANEDVQMRSDWLIPICSGSERLRN---------------KDGEKL-HPTQKPEALLSR 215
                    R  ++ P   G+E+ R                   EK  +PTQKP  +L R
Sbjct: 171 -------SDRIPYMAPGLVGAEKARRGKTPTDVWWHTIVSPTGKEKTGYPTQKPLGILER 223

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           I+   + P D +LD F GSGT+G  A +  RS+I ++  ++ + +  KR+
Sbjct: 224 IVRVHSNPDDTVLDFFAGSGTTGLAAARNGRSYILVDESKEAVTLMKKRL 273


>gi|229269517|ref|YP_001338785.2| putative methylase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 233

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 107/255 (41%), Gaps = 48/255 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I GN I V+   P ++VDLI  DPPY   L G   R    +   VTD W + ++ E Y
Sbjct: 3   RFILGNCIDVMRGFPDRAVDLIVTDPPY---LVGFKDRQGRQIAGDVTDEWLQPATLEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK---SNPMP 138
                       RVLK +  +    S++ + R     +   F+ +  +V+ K   SN   
Sbjct: 60  ------------RVLKKDALMVSFYSWNRVDRFMAAWKAAGFYAVGQLVFTKNYASNRRN 107

Query: 139 NFRGRRFQN-AHE---TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
               R F +  HE    L    P P  K              DV       +P       
Sbjct: 108 ARARRGFVDYCHEGAYVLAKGRPVPPLKPL-----------PDV-------LPF------ 143

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                G  LHPTQKP   L  ++ S + PG I+LDPF GSG++   A +  R +IGIEM 
Sbjct: 144 --PYTGNTLHPTQKPVEALQPLIESFSAPGAIVLDPFAGSGSTCVAAYRAGRRYIGIEML 201

Query: 255 QDYIDIATKRIASVQ 269
             Y    T+R+ ++ 
Sbjct: 202 AQYHRAGTERLDAMH 216


>gi|324016383|gb|EGB85602.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 117-3]
          Length = 227

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 105/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I+G+ + V+   P  +VD I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFIQGDCVRVMATFPGNAVDFILTDPPY---LVGFRDRQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFVAAWKNAGFSVVGHLVFTKTYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPALPQKPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|291541442|emb|CBL14552.1| DNA modification methylase [Ruminococcus bromii L2-63]
 gi|291557341|emb|CBL34458.1| DNA modification methylase [Eubacterium siraeum V10Sc8a]
 gi|295092168|emb|CBK78275.1| DNA modification methylase [Clostridium cf. saccharolyticum K10]
          Length = 318

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 126/325 (38%), Gaps = 93/325 (28%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW-DKFSSFE 79
           DKI  G+S+ VL+ LP  +VD     PPY            ++L D   D    + ++ E
Sbjct: 6   DKIYCGDSLQVLQTLPENAVDCCVTSPPY------------YALRDYGADGQIGREATPE 53

Query: 80  AYDAFTRAWLLACRRVLKPNGTLW--VIGSYHNI-------------------------- 111
            Y +   A     +RVL P GT W  +  +Y                             
Sbjct: 54  EYVSRITAVFHEVKRVLTPEGTCWLNIADTYCGTGSKADHQDPKYPKGRNGQQVAFNHRA 113

Query: 112 ------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
                       + +   L+   +++ + I+W K+NPMP     R    +E +   +   
Sbjct: 114 PGCKPKDLIGIPWLVALALRGDGWYLRSSIIWHKTNPMPESTRDRPTRCYEYVFLLT--- 170

Query: 160 KAKGYTFNYDALK---AANEDVQMRS-------------------------------DWL 185
           K+K Y +++ A+    A     +++S                               D L
Sbjct: 171 KSKKYYYDWQAVAEPIAPTTAGRLKSGVSKGNKYNVTVPGQNQPQKINRPREKGAYADEL 230

Query: 186 I-PICSGSE--RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           I P+ S     ++ N      H    P  L    +++    G I+LDPFFGSGT+G VAK
Sbjct: 231 ISPVRSRRNVWQINNVGYHGGHFAAFPPKLAETCILAGCPIGGIVLDPFFGSGTTGMVAK 290

Query: 243 KLRRSFIGIEMKQDYIDIATKRIAS 267
           +L R +IGIE+  DY ++A +RI  
Sbjct: 291 RLNRRYIGIELNPDYCELAKQRIGG 315


>gi|209916856|ref|YP_002291176.1| putative methylase [Escherichia coli SE11]
 gi|209915282|dbj|BAG80354.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|324017660|gb|EGB86879.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 117-3]
          Length = 227

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 107/254 (42%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPY---LVGFRDRSGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFVAAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|163782845|ref|ZP_02177841.1| DNA modification methylase-like protein [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159881966|gb|EDP75474.1| DNA modification methylase-like protein [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 281

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 119/256 (46%), Gaps = 32/256 (12%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +I G+ + VL+++P++S+DL    PPYN +   + +  D  + ++  D+  +    E Y 
Sbjct: 11  VICGDVLEVLKQIPSESIDLGITSPPYNKKGKNKGWLVDRVVYESYGDNMKE----EEYQ 66

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNI-FRIGTMLQNLNF-----W-ILNDIVWRKSN 135
            +    L    RV+K  G+ +     H I +  G M+    +     W +  +IVW +  
Sbjct: 67  EWQVEVLNKLYRVIKEGGSFFY---NHKIRWERGKMIHPYEWVSKTKWAVRQEIVWNRK- 122

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
              N RG RF    E + W     K K      + LK   E  +  S W I         
Sbjct: 123 LAGNIRGWRFWQVDERIYWLY---KPKNGNLIGEELKP--EHAKFSSVWEI--------- 168

Query: 196 RNKDGEKLHPTQKPEALLSRILVS--STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           R + G K HP   P  L +RI++S    K G I+LDPF G GT+   AK L   ++GI++
Sbjct: 169 RPESGFKEHPAPFPIELPTRIILSILDDKKG-IVLDPFCGIGTTLVSAKLLGHDYVGIDI 227

Query: 254 KQDYIDIATKRIASVQ 269
            +DY+D + +R+   +
Sbjct: 228 SKDYVDFSQRRLERAE 243


>gi|254252471|ref|ZP_04945789.1| DNA modification methylase [Burkholderia dolosa AUO158]
 gi|124895080|gb|EAY68960.1| DNA modification methylase [Burkholderia dolosa AUO158]
          Length = 344

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 90/204 (44%), Gaps = 53/204 (25%)

Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
           +R+   LQ   +++  DI+W K NPMP     R   AHE L   S   K++ Y F+ DA+
Sbjct: 136 WRLAFALQEAGWYLRQDIIWHKPNPMPESVRDRCTKAHEYLFLLS---KSERYYFDQDAI 192

Query: 172 ---KAANEDVQMRSDWLIPICS----------------GSERLRNKDGEKLH-------- 204
               +AN   ++  +    I S                G +   +  G K +        
Sbjct: 193 LEPVSANTHARLSQNVQAQIGSARANGGAKTNGNMKAVGRKLAHDASGTKTNASFDEAMA 252

Query: 205 --------------PTQK---------PEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                         PTQ          PEAL+   +++ ++PGD++ DPFFGSGT+G VA
Sbjct: 253 IMPTERNRRSVWTIPTQSYSGAHFATFPEALVEPCVLAGSRPGDVVFDPFFGSGTTGQVA 312

Query: 242 KKLRRSFIGIEMKQDYIDIATKRI 265
           ++L R FIG E+  +Y  +   R+
Sbjct: 313 QRLGRRFIGCELNPNYEPLQRDRL 336


>gi|148554497|ref|YP_001262079.1| DNA methylase N-4/N-6 domain-containing protein [Sphingomonas
           wittichii RW1]
 gi|148499687|gb|ABQ67941.1| DNA methylase N-4/N-6 domain protein [Sphingomonas wittichii RW1]
          Length = 483

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 105/236 (44%), Gaps = 22/236 (9%)

Query: 35  LPAKSVDLIFADPPYNLQLNG---QLYRPDH-SLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
           L  +++D +F+DPPYN+++ G    L R  H      V +  D     + +  F   +LL
Sbjct: 228 LDGRTIDGVFSDPPYNIKIEGVVSGLGRTRHKDFAMGVGEMSD-----DQFRTFLGDYLL 282

Query: 91  ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
            CR    P   ++    +  +  +    ++  F  +N  VW K +      G  +++A+E
Sbjct: 283 RCREHASPGAVIFACMDWRQVDLLMLAGRDAGFHRINKAVWHKGS---GGMGSLYRSAYE 339

Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL--HPTQK 208
            ++     P     T   + +          + W     +G+ R  +  G+ L  HPT K
Sbjct: 340 EVVVFCTEP-----TLATNNVLLGKNGRNRTNLWTY---AGASRKGSSAGKALADHPTPK 391

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           P  L+   L   TK GD++ DPF GSGT+   A+ + R   GIE+   Y+D+A  R
Sbjct: 392 PVELVVDALQDVTKRGDLVFDPFMGSGTTLVAAQAVGRIACGIELDPGYVDVAILR 447


>gi|270265405|ref|ZP_06193665.1| hypothetical protein SOD_n00250 [Serratia odorifera 4Rx13]
 gi|270040660|gb|EFA13764.1| hypothetical protein SOD_n00250 [Serratia odorifera 4Rx13]
          Length = 214

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 102/237 (43%), Gaps = 43/237 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + G+S+ V+   PA S+D I  DPPY   L G   R   S+ +     W   +S E +
Sbjct: 3   RYVLGDSVQVMSTFPAASIDFILTDPPY---LVGFTDRTGRSIANDTNGDWVLPASREMF 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN-F 140
                       RVLKPN  +     ++ +    +  +   F I+  +V+ K     + F
Sbjct: 60  ------------RVLKPNSLMVSFYGWNRVDAFVSAWKAAGFRIVGHLVFTKHYASKSAF 107

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G + +NA+   I A   P                 DVQ    W               G
Sbjct: 108 VGYQHENAY---ILAKGRPPLPAQPLG---------DVQ---SW------------EYTG 140

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
            + HPT+KP + L  ++ S T+PG I+LDPF GSG++   A +  R +IGIE+  DY
Sbjct: 141 NRHHPTEKPVSSLQPLIESFTQPGAIVLDPFAGSGSTCVAAAQAGRRYIGIELLPDY 197


>gi|209524877|ref|ZP_03273423.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
 gi|209494756|gb|EDZ95065.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
          Length = 301

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 129/296 (43%), Gaps = 62/296 (20%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +K++ G+  +V   +P  S+  I   PPY    N       ++  D   +   + ++   
Sbjct: 9   NKVLLGDIRTVSVIIPDNSIQAIITSPPYFGHRN-------YTGKDGCANEIGREANVTD 61

Query: 81  YDAFTRAWLLACRRVLKP----NGTLWV-IG-SYHNI------FRIGTMLQNLNFWILND 128
           Y       L+ C  V+KP    NG LW+ +G +Y N       +R+   L++  + + +D
Sbjct: 62  YINN----LVTCFEVVKPKLKNNGLLWLNLGDTYRNKQLEGVPWRVAFALKDRGWILRSD 117

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN----EDVQMRS-- 182
           I+W+K N MP+    R    HE +   S   K   Y ++ DA++  +    E  +MR   
Sbjct: 118 IIWKKPNAMPSSVKNRPTTDHEYIFMFS---KNTDYYYDADAIREPHITFTEQSKMRGGR 174

Query: 183 DWLIPICSGSERLRNKDGEKLH---------------------PTQK---------PEAL 212
           +      S  E  +N   + LH                     P  K         PE L
Sbjct: 175 NHFGKRNSTPENGKNSGNQNLHDGRWDQAFHPKGRNKRTVWEIPLGKFRDAHFAVYPEDL 234

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +   L++ST+ GD++LDPF GSGT+G VA K  R FIG E+ + Y  +A  RI  +
Sbjct: 235 VKICLLASTRQGDLVLDPFTGSGTTGVVAIKHDRKFIGCELVKTYQKMAQNRIDEI 290


>gi|218441866|ref|YP_002380195.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
 gi|218174594|gb|ACK73327.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
          Length = 597

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 128/299 (42%), Gaps = 59/299 (19%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           NS  +W++K+I  + +  L  +P+  VDLI   PPY                    DS  
Sbjct: 10  NSSQDWQNKVILSDCLQSLRAMPSHLVDLIVTSPPY-------------------ADSRK 50

Query: 74  KFSSFEAYDAFTRAWLL----ACRRVLKPNGTLW-------VIGSYHN-IFRIGTMLQNL 121
           K     + D +   W L      +R+LKP+GT         V G  HN + ++   LQ  
Sbjct: 51  KTYGGISPDDYVN-WFLPISQELKRILKPDGTFILNIKEKVVNGERHNYVIKLILELQKQ 109

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT---------FNYDALK 172
            +    + +W K N  P     RF++A E  +  +   K K Y          +    LK
Sbjct: 110 GWLWTEEYIWHKKNCYPGKWPNRFRDAWERCLQFNKQKKFKMYQERVMIPMGDWANSRLK 169

Query: 173 AANEDVQMR-------------SDWL---IPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
             ++  ++R             S+W+   +   +    L  +   K H    P++L S  
Sbjct: 170 KLSDTDKIRDHSKVESGFGKNISNWIGRSMAYPTNVLHLATECNNKNHSATFPKSLPSWF 229

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           +   T+  D++LDPF GSGT+   AK+L R +IGIE+K++Y ++A   I   + + NIE
Sbjct: 230 IKLFTETSDLVLDPFLGSGTTCIAAKELGRHYIGIEIKKEYYELAVANIE--KAVFNIE 286


>gi|238023453|ref|YP_002907686.1| DNA methylase N-4/N-6 domain protein [Burkholderia glumae BGR1]
 gi|237880506|gb|ACR32835.1| DNA methylase N-4/N-6 domain protein [Burkholderia glumae BGR1]
          Length = 217

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 103/248 (41%), Gaps = 41/248 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           + +G+ +  L +L  +SVD +  DPPY +       R   S+ + VTD W   +  E Y 
Sbjct: 4   LFRGDCLVALPQLARESVDCVITDPPYLVNFRD---RSGRSIANDVTDEWLDPAFAEIY- 59

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
                      RVLK +        ++ + R     +   F +   +++ K+    +   
Sbjct: 60  -----------RVLKRDTVCVSFYGWNKVDRFFQAWKRAGFRVCGHLIFTKTYGSKSGMV 108

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +    A   L    P   A               DVQ       P            G +
Sbjct: 109 KYQHEAAYVLGKGRPEAPANPIA-----------DVQP-----FPY----------TGNR 142

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPT+KP A L  ++ + TKPGD +LDPF GSG++   A++L R +IGIE+ + Y   A 
Sbjct: 143 HHPTEKPVAALRTLIAAFTKPGDTVLDPFAGSGSTCVAARELGRRYIGIELDETYFAAAK 202

Query: 263 KRIASVQP 270
            R+++  P
Sbjct: 203 ARLSAPLP 210


>gi|9507473|ref|NP_052480.1| putative methylase [Plasmid ColIb-P9]
 gi|32470188|ref|NP_863412.1| putative methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|194447065|ref|YP_002039086.1| putative methylase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194447177|ref|YP_002043881.1| DNA methylase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|4512470|dbj|BAA75119.1| ycdB [Plasmid ColIb-P9]
 gi|20521556|dbj|BAB91620.1| putative mrthylase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|194358509|gb|ACF56953.1| DNA methylase family protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194405481|gb|ACF65702.1| DNA methylase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|321271602|gb|ADW79690.1| putative DNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Kentucky]
          Length = 227

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 105/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P   +D I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNGIDFILTDPPY---LVGFRDRQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ ++                            
Sbjct: 108 VGYRHECAYVLAKGRPALPQKPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|159028624|emb|CAO90627.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 317

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 125/298 (41%), Gaps = 76/298 (25%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           + +G+S + ++ +P  SV LI   PPYNL                    ++K  S + Y 
Sbjct: 25  LYQGDSNNFIKTIPDNSVSLIITSPPYNL-----------------GKDYEKKISLDTYL 67

Query: 83  AFTRAWLLACRRVLKPNGTL-WVIGSY--------HNIFRIGTMLQNLNFWILNDIVWRK 133
                 L+   R+L+ NG++ W +G++         +IF    + + + F++ N IVW  
Sbjct: 68  ETQTKILVEFPRILQDNGSICWQVGNFVQEGEVYPLDIFYY-QLFKQMGFFLRNRIVWHF 126

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK-------------------AA 174
            + +     +RF   +ET++W +   K   Y FN D ++                   + 
Sbjct: 127 GHGL--HTSKRFSGRYETILWLT---KTDKYIFNLDPVRIPAKYPGKRHFKGKNIGKPSG 181

Query: 175 NEDVQMRSD-------------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
           N   +  SD             W IP         N   + +HP Q P  L+ R +++ T
Sbjct: 182 NPLGKNPSDVWEFLAQEWDELLWDIPNVKS-----NHPEKTIHPCQYPIELVERCVLALT 236

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS-------VQPLG 272
             GD + DPF G GTS   +    R  +G E + +Y+ IA +RIA+       ++PLG
Sbjct: 237 NEGDWVFDPFAGVGTSLIASIMHNRRVMGSEKEAEYVKIARERIAAYLQGNLKIRPLG 294


>gi|257453086|ref|ZP_05618385.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
           3_1_5R]
 gi|257462768|ref|ZP_05627176.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
           D12]
          Length = 314

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 124/307 (40%), Gaps = 66/307 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF--E 79
           KI+ G+    L+ +  +S+D I   PPY  QL          + +++ +  DK  +   E
Sbjct: 2   KIMHGDCSEYLKTIKTESIDCIVTSPPY-WQLRDYGVSNQIGMEESIEEYIDKLMNIMNE 60

Query: 80  AYDAFTRAWLLACR---------------RVLKPNGTLWVIGSY----HNIFRIGTML-- 118
            Y    ++                       +K N   W+ G+      NI R   M+  
Sbjct: 61  LYRVLKKSGTFFLNLGDTYSNVNSKFYPANKMKDNKFSWIEGTVVSRKTNILRKSKMMIP 120

Query: 119 QNLNF------WIL-NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
           + L+       WIL N+I+W K N +P     RF N  E + + + S K   Y F     
Sbjct: 121 ERLSIRMIDSGWILRNEIIWHKPNALPESLTDRFTNDFEKIFFFTKSQK---YYFQKQYE 177

Query: 172 KAANEDVQMRSDWLIP------ICSGSERL------------RNKDGEKL---------- 203
             + + +    D ++P      + +G  ++             N+ G  +          
Sbjct: 178 PYSEKTLHSFKDGIMPTGKKKMLSAGESKMAMKKIDKPWRAVYNEKGRNMRTVWSIANKG 237

Query: 204 ----HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
               H    PE L+ R L+S      I+LDPF GSGT+  VAK L  + IGIE+K++YID
Sbjct: 238 LREGHYASFPEKLVERCLLSGCPQNGIVLDPFLGSGTTLKVAKNLNLNGIGIELKKEYID 297

Query: 260 IATKRIA 266
           IA  RI 
Sbjct: 298 IAVHRIG 304


>gi|254559486|ref|YP_003066581.1| phage methyltransferase [Methylobacterium extorquens DM4]
 gi|254266764|emb|CAX22563.1| putative phage methyltransferase [Methylobacterium extorquens DM4]
          Length = 494

 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 106/231 (45%), Gaps = 12/231 (5%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           L  +SV ++F+DPPYN+ ++G +             +  + S  E + AF    +   R 
Sbjct: 217 LQGESVRMVFSDPPYNVPVSGHVCGSGKVQHREFAMASGEMSEAE-FVAFLVQAMAHLRE 275

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP-MPNFRGRRFQNAHETLI 153
            L P G +++   + ++F + T  + +    LN  VW K+N  M +F    +++ HE LI
Sbjct: 276 RLVPGGLMYLAMDHRHVFELSTAARQIGLEQLNICVWNKTNAGMGSF----YRSKHE-LI 330

Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL 213
           +    P A     N   L           D+      G  R+R       HPT KP AL+
Sbjct: 331 FVLRKPGAA--HLNTVELGRHGRYRTNVWDYAGVNTFGRHRIRELSS---HPTVKPVALV 385

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
              +   T+ G+ +LD F GSGT+   A++  R   GIE+   Y+D+A +R
Sbjct: 386 IDAIKDCTRRGERVLDAFCGSGTTLIAAERAGRVGYGIELDPVYVDVAVRR 436


>gi|303235466|ref|ZP_07322079.1| DNA (cytosine-5-)-methyltransferase [Prevotella disiens FB035-09AN]
 gi|302484333|gb|EFL47315.1| DNA (cytosine-5-)-methyltransferase [Prevotella disiens FB035-09AN]
          Length = 267

 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 116/282 (41%), Gaps = 58/282 (20%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           I E+ + II GN + V+ K P  ++DL+   PPY                       D  
Sbjct: 2   IDEYINTIINGNCVDVIRKFPDNAIDLVVTSPPY-----------------------DNL 38

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNG-TLWVIGSYH-------NIFRIGTMLQNLNFWILN 127
             ++ Y       +    RV+K +G  +WV+             F+       + F + +
Sbjct: 39  RDYKGYTFPFDDIVEQLYRVVKEHGIVVWVVSDATIEGSETCTSFKQALAFVKMGFNLHD 98

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWAS------------PSPKAKGYTFNYDALKAAN 175
            ++++K+NP+P    +R+ N  E +   S            P   A G   N    K  +
Sbjct: 99  TMIFQKTNPVPQIYRKRYTNVFEYMFVFSKGSVLTHNAIKIPCLHA-GLELNGTTYKNYS 157

Query: 176 EDVQMRSDWLIPICSGSERLRNK-----------DGE-KLHPTQKPEALLSRILVSSTKP 223
           +  Q R+    P+    ++L+             D E K HP   P  L +  + S T  
Sbjct: 158 KGEQTRTKQAKPV--KQDKLKGNIWEYVVGKKAVDQEAKGHPAPFPFELAADHIKSWTDE 215

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
             I+LDP  GSGT+   A +L+R FIGI++ Q+Y ++A +R+
Sbjct: 216 DAIVLDPMCGSGTTCVAAYELKRKFIGIDISQEYCELAKRRL 257


>gi|308751880|gb|ADO45363.1| DNA methylase N-4/N-6 domain protein [Hydrogenobacter thermophilus
           TK-6]
          Length = 275

 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 111/268 (41%), Gaps = 44/268 (16%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           I   S   +E+LP  SV L+   PPYN                 V   +DK  SF+ Y  
Sbjct: 26  IYCKSSESMEELPDNSVHLVVTSPPYN-----------------VGKEYDKDLSFKEYLE 68

Query: 84  FTRAWLLACRRVLKPNGTLWV----IGSYHNI----FRIGTMLQNLNFWILNDIVWRKSN 135
           F +       RVL P G + +    +G    I    F I  ML ++ F +  +I+W K  
Sbjct: 69  FLKRVWKEVYRVLVPGGRVCINVANLGRKPYIPLHAFIIQDML-DIGFLMRGEIIWNKDK 127

Query: 136 PMP---------NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM-RSDWL 185
                       + +    ++ HE ++  S     +G      +    +E ++  +S W+
Sbjct: 128 SASPSTAWGSWLSAQNPTLRDIHEYILVFSKDTFKRGNPLKRQSTITRDEFLEFTKSVWV 187

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
            P  S       K G   HP   P  L  R +   T  G+++LDPF GSG +   A K  
Sbjct: 188 FPAVSA-----KKIG---HPAPFPIELPYRCIQLYTFKGEVVLDPFMGSGQTAIAAIKSG 239

Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGN 273
           R F+G E+ QDY+ +A +RI  V   GN
Sbjct: 240 RYFVGYEINQDYVKLAERRIRQVLSEGN 267


>gi|298378889|ref|ZP_06988771.1| methylase [Escherichia coli FVEC1302]
 gi|301046627|ref|ZP_07193760.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 185-1]
 gi|298280498|gb|EFI22001.1| methylase [Escherichia coli FVEC1302]
 gi|300301419|gb|EFJ57804.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 185-1]
          Length = 227

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 105/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY   L G   R   ++   V D W + +S E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPY---LVGFRDRSGRTIAGDVNDDWLQPASNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK N  +     ++ I R     +   F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKNALMVSFYGWNRIDRFMAAWKRAGFSVVGHLVFTKNYTSKSAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
              R + A+        +   P P   G+ ++                            
Sbjct: 108 VAYRHECAYILAKGRPALPQKPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|213419982|ref|ZP_03353048.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 149

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 53/82 (64%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPTQKP ALL RI+++S+ P D +LDPF GS T+GAVA    R FIGIE+  +Y+ +  +
Sbjct: 50  HPTQKPSALLKRIILASSNPSDTVLDPFAGSFTTGAVAAASGRKFIGIELNNEYVKMGLR 109

Query: 264 RIASVQPLGNIELTVLTGKRTE 285
           R++        EL  +  ++T+
Sbjct: 110 RLSVTSHYSENELAKVKKRKTQ 131


>gi|225870605|ref|YP_002746552.1| modification DNA methylase [Streptococcus equi subsp. equi 4047]
 gi|213033062|emb|CAP20345.1| modification DNA methylase [Streptococcus equi subsp. equi]
 gi|225700009|emb|CAW94012.1| modification DNA methylase [Streptococcus equi subsp. equi 4047]
          Length = 344

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 135/346 (39%), Gaps = 102/346 (29%)

Query: 5   NSLAINENQNS-IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYR 59
           N ++++ ++   I E  +KII  +++  L K+P +S+      PPY    N    GQ+ R
Sbjct: 2   NRMSVSRSKEEFIKENTNKIICSDALETLRKIPDESISCCITSPPYYRLRNYHKEGQIGR 61

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI------------GS 107
                           S+ E Y           RR LK  GT +++            G 
Sbjct: 62  E---------------STVEEYLDRLLQVFREVRRALKKEGTCFIVIGDSYADSGGGKGQ 106

Query: 108 Y-----------------HNI------------FRIGTMLQNLNFWILNDIVWRKSNPMP 138
           Y                  NI            +R+  +L+   +++ +DI+W K N MP
Sbjct: 107 YIDPKYPKARNGSNALATENISGYKSKDLMGIPWRLALLLREDGWYLRSDIIWHKENAMP 166

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
                R   ++E +   + SPK   Y ++YDA+    ++V  +  ++    S ++ L+  
Sbjct: 167 EACRDRPTRSYEHIFLLTKSPK---YYYDYDAMVEPMKEVSKKR-YVRGRKSDNKYLKEN 222

Query: 199 DGEKL-------------------------------------HPTQKPEALLSRILVSST 221
            G KL                                     H    P  L+   +++  
Sbjct: 223 SGAKLQKINEARKYGEYKGDNVPQFRNKRDIWTINTTSFRGNHYATFPPKLVEICMIAGC 282

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
              +I+LDPF GSGT G VA +  R +IGIE+ ++Y+++A  RI+ 
Sbjct: 283 PKNEIVLDPFIGSGTVGFVALRHNRKYIGIELNEEYVNLAKNRISE 328


>gi|260751940|ref|YP_003232478.1| DNA modification methylase [Escherichia coli O26:H11 str. 11368]
 gi|257757303|dbj|BAI28803.1| DNA modification methylase [Escherichia coli O26:H11 str. 11368]
          Length = 227

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 106/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I G+ + V+   P  +VD I  DPPY   L G   R   ++   V D W + +S E Y
Sbjct: 3   RFILGDCVRVMATFPDNAVDFILTDPPY---LVGFRDRSGRTIAGDVNDDWLQPASNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|253801008|ref|YP_003034009.1| putative methylase [Escherichia coli Vir68]
 gi|253721185|gb|ACT33494.1| putative DNA methylase [Escherichia coli Vir68]
          Length = 227

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 107/249 (42%), Gaps = 43/249 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I+G+ + V+   P  +VD I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFIQGDCVRVMATFPGNAVDFILTDPPY---LVGFRDRQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYTSKAAY 107

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G R + A+  L    P+   K                       +P   G + L    G
Sbjct: 108 VGYRHECAY-ILAKGRPALPQKP----------------------LPDVLGWKYL----G 140

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ + Y   
Sbjct: 141 NRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHCA 200

Query: 261 ATKRIASVQ 269
             +R+A+VQ
Sbjct: 201 GQQRLAAVQ 209


>gi|291285942|ref|YP_003502759.1| hypothetical protein G2583_pO550159 [Escherichia coli O55:H7 str.
           CB9615]
 gi|290765815|gb|ADD59775.1| hypothetical protein G2583_pO550159 [Escherichia coli O55:H7 str.
           CB9615]
          Length = 227

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 105/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I+G+ + V+   P  +VD I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFIQGDCVRVMATFPGNAVDFILTDPPY---LVGFRDRQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDTLMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPALPQKPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|238029038|ref|YP_002913263.1| DNA methylase N-4/N-6 domain protein [Burkholderia glumae BGR1]
 gi|237880615|gb|ACR32943.1| DNA methylase N-4/N-6 domain protein [Burkholderia glumae BGR1]
          Length = 217

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 98/242 (40%), Gaps = 41/242 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+ +  L KL  +SVD +  DPPY +       R   S+ + VTD W   +  E Y 
Sbjct: 4   LYHGDCLVALPKLAPESVDCVVTDPPYLVNFRD---RSGRSMANDVTDEWLDPAFAEIY- 59

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
                      RVLK +        +  + R     +   F +   IV+ K+    +   
Sbjct: 60  -----------RVLKRDTVCVSFYGWGKVDRFFQAWKRAGFRVCGHIVFTKTYGSKSGMV 108

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +    A   L    P           DA      DVQ       P            G +
Sbjct: 109 KYQHEAAYVLGKGRP-----------DAPANPIADVQP-----FPYT----------GNR 142

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPT+KP A L  ++ + TKPGD +LDPF GSG++   A++L R +IGIE+ + Y   A 
Sbjct: 143 HHPTEKPVAALRTLIAAFTKPGDTVLDPFAGSGSTCVAARELGRRYIGIELDETYFAAAK 202

Query: 263 KR 264
            R
Sbjct: 203 AR 204


>gi|61805913|ref|YP_214273.1| DNA adenine methylase [Prochlorococcus phage P-SSM2]
 gi|61374422|gb|AAX44419.1| DNA adenine methylase [Prochlorococcus phage P-SSM2]
          Length = 322

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 79/167 (47%), Gaps = 25/167 (14%)

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR--- 181
           +  DI+W K NPMP     R   AHE +   S   K K Y ++ +A+K   +D   R   
Sbjct: 139 LRQDIIWHKPNPMPESVRDRCTKAHEYIFLFS---KQKNYFYDNEAIKEDAKDWGTRDRS 195

Query: 182 -------SDWLIPICSGSERLRNKDGEK------------LHPTQKPEALLSRILVSSTK 222
                  +D+     SG  +   K  ++             H    P  L+   +++ ++
Sbjct: 196 KGKYTSNNDYGQTPHSGLTKSYAKKNKRSVWSVTKKPYKGAHFATYPPDLIEPCILAGSE 255

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            GDI+LDPF GSGT+ AVAK L R +IG E+ +DY D+  KR+   +
Sbjct: 256 KGDIVLDPFMGSGTTAAVAKSLGRDYIGCELHEDYGDLIRKRVGEYE 302


>gi|332654727|ref|ZP_08420470.1| DNA (cytosine-5-)-methyltransferase [Ruminococcaceae bacterium D16]
 gi|332516691|gb|EGJ46297.1| DNA (cytosine-5-)-methyltransferase [Ruminococcaceae bacterium D16]
          Length = 350

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 123/325 (37%), Gaps = 93/325 (28%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD-AVTDSWDKFSSFE 79
           D I  G+ + +L+ LP  SV      PPY            ++L D  +     + ++ +
Sbjct: 39  DIIHTGDCLEILKALPDDSVHCCVTSPPY------------YALRDYGMEAQIGRETTPK 86

Query: 80  AYDAFTRAWLLACRRVLKPNGTLW--VIGSYHNIFRIGTM-------------------- 117
            Y +         RRVL+P+GTLW  +  +Y      G                      
Sbjct: 87  EYISRLTEVFTEVRRVLRPDGTLWLNISDTYAGKGNQGDFIDPKNPNGRNGQAVALNNKV 146

Query: 118 ------------------LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
                             L++  +++ NDI+W K NPMP     R    +E +   S   
Sbjct: 147 EGCKPKDMIGIPWMLAFALRDTGWYLRNDIIWMKDNPMPESVKDRLSRCYEHIFLFS--- 203

Query: 160 KAKGYTFNYDA----------------LKAANEDVQMRSDWLIPICSGSER--------- 194
           K+K Y F+Y A                +K  N+  +       P      R         
Sbjct: 204 KSKKYFFDYKAISEPIAPATAERLKRGMKGGNKYGKPVPGQPQPQSINRPREHGEIKDCD 263

Query: 195 ---LRNK-DGEKL--------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
              LRNK D  K+        H    P  L+   L++    G I+LDPF GSGT+G VA 
Sbjct: 264 INPLRNKRDVWKINTVPFKGGHYAAYPPKLVETCLLAGCPEGGIVLDPFMGSGTTGMVAS 323

Query: 243 KLRRSFIGIEMKQDYIDIATKRIAS 267
           ++ R F+G+E+  +Y ++A KRI  
Sbjct: 324 QMGRHFVGVELNPEYTELAYKRIGG 348


>gi|326782063|ref|YP_004322464.1| DNA adenine methylase [Prochlorococcus phage P-HM1]
 gi|310004270|gb|ADO98663.1| DNA adenine methylase [Prochlorococcus phage P-HM1]
          Length = 309

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 25/168 (14%)

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA-------- 174
           +++  DI+W K NPMP     R   +HE L   S   K + Y ++ +A+K          
Sbjct: 139 WYLRQDIIWHKPNPMPESVRDRCTKSHEYLFLLS---KNRKYYYDNEAIKEPVKQDWGTR 195

Query: 175 NED----------VQMRSDWLIPICSGSER----LRNKDGEKLHPTQKPEALLSRILVSS 220
           N D          +Q  +       + ++R    + NK  +  H    P  L+   +++ 
Sbjct: 196 NRDQGKYHNEGTGLQPHTGLTKSYTTKNKRSVWSITNKPYKGAHFAVFPPDLIEPCILAG 255

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           ++ GDIILDPF GSGT+G VAKK  R++IG E+ +DY  + T RI SV
Sbjct: 256 SERGDIILDPFMGSGTTGMVAKKHGRNYIGCELHEDYASLQTDRIDSV 303


>gi|265525120|gb|ACY75917.1| cytosine methyltransferase [Prochlorococcus phage P-SSM2]
          Length = 327

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 79/167 (47%), Gaps = 25/167 (14%)

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR--- 181
           +  DI+W K NPMP     R   AHE +   S   K K Y ++ +A+K   +D   R   
Sbjct: 144 LRQDIIWHKPNPMPESVRDRCTKAHEYIFLFS---KQKNYFYDNEAIKEDAKDWGTRDRS 200

Query: 182 -------SDWLIPICSGSERLRNKDGEK------------LHPTQKPEALLSRILVSSTK 222
                  +D+     SG  +   K  ++             H    P  L+   +++ ++
Sbjct: 201 KGKYTSNNDYGQTPHSGLTKSYAKKNKRSVWSVTKKPYKGAHFATYPPDLIEPCILAGSE 260

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            GDI+LDPF GSGT+ AVAK L R +IG E+ +DY D+  KR+   +
Sbjct: 261 KGDIVLDPFMGSGTTAAVAKSLGRDYIGCELHEDYGDLIRKRVGEYE 307


>gi|284115629|ref|ZP_06386690.1| adenine-specific DNA methylase [Candidatus Poribacteria sp. WGA-A3]
 gi|283829559|gb|EFC33907.1| adenine-specific DNA methylase [Candidatus Poribacteria sp. WGA-A3]
          Length = 497

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 133/323 (41%), Gaps = 91/323 (28%)

Query: 20  KDKIIKGNSISVLEK-LPAKSVDLIFADPP------YNLQLNGQLYRPDHSLVDAVTDSW 72
           K+++  G+ ++V+   +   SVDLI+ DPP      YN     +  RP    +DA  D W
Sbjct: 15  KNRLYYGDCLTVMRDFMKLGSVDLIYLDPPFNSNRSYNAIYKDETGRPLPDQLDAFCDLW 74

Query: 73  -----------------------DKFSSF---------------EAYDAFTRAWLLACRR 94
                                  D+   F                AY ++    LL  + 
Sbjct: 75  ELTPERNEALRRMPVLMREQGIDDQVVEFWRLWMNALRGTQPRLLAYMSYMVERLLYMKT 134

Query: 95  VLKPNGTLWV----IGSYHNIFRIGTMLQNLNFWILNDIVWRKSN-PMPNFRGRRFQNAH 149
           +LKP G+L++      S++    +  +  + NF   N+I+W     P P   GR++Q  H
Sbjct: 135 ILKPTGSLYLHCDPTASHYIKVMMDAIFGHQNF--RNEIIWSYRRWPSP---GRKYQTMH 189

Query: 150 ETLIW-----------------ASPSPKAKGYTFNYD--------ALKAANEDVQMRSDW 184
           + +++                  S + + KG T   D              + +  R  W
Sbjct: 190 DVILFYAMGEHNTFHVGYEPVSESYAKRFKGKTQILDPETKTRKLTKDEPTKGLPQRDVW 249

Query: 185 LIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
            + I +GS R      E+L + TQKP  LL RI+ +S+ PGD+I DPF G GT+   A  
Sbjct: 250 ELSILAGSSR------ERLGYATQKPLTLLERIIQTSSNPGDVIFDPFCGCGTTLEAAHT 303

Query: 244 LRRSFIGIEMKQDYIDIATKRIA 266
           L R +IGI++       A KR+A
Sbjct: 304 LNRRWIGIDIAIH----AVKRVA 322


>gi|323959010|gb|EGB54680.1| DNA methylase [Escherichia coli H489]
          Length = 227

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 103/258 (39%), Gaps = 61/258 (23%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY   L G   R   ++   V D W + +S E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPY---LVGFRDRSGRTIAGDVNDDWLQPASNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                       RVLK N  +     ++ I R     +   F ++  +V           
Sbjct: 60  ------------RVLKKNALMVSFYGWNRIDRFMAAWKRAGFSVVGHLV----------- 96

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK--- 198
                                 +T NY +  A    V  R +    +  G   L  K   
Sbjct: 97  ----------------------FTKNYTSKSAY---VAYRHECAYILAKGRPALPQKPLP 131

Query: 199 -------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
                   G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IG+
Sbjct: 132 DVLGWKYSGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGV 191

Query: 252 EMKQDYIDIATKRIASVQ 269
           E+ + Y     +R+A+VQ
Sbjct: 192 ELLEQYHRAGQQRLAAVQ 209


>gi|119961011|ref|YP_948482.1| adenine specific DNA methylase [Arthrobacter aurescens TC1]
 gi|119947870|gb|ABM06781.1| adenine specific DNA methylase [Arthrobacter aurescens TC1]
          Length = 304

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 129/282 (45%), Gaps = 52/282 (18%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-----------S 71
           ++  ++   L  LP  +  LI+ DPP+N    G++ R   + +    D           S
Sbjct: 14  VVHADNAEFLPTLPDGAFTLIYVDPPFN---TGRVQRRQETRMVRNADGDGDRVGFKGRS 70

Query: 72  WDKF-SSFEAYD-AFTRAW------LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-- 121
           +D    +  +YD AF+  W      L+   R+L  +GTL++   Y  +     ML ++  
Sbjct: 71  YDTIKGALHSYDDAFSDYWSFLEPKLVEAWRLLADDGTLYLHLDYREVHYAKVMLDSIFG 130

Query: 122 NFWILNDIVWRKSNPMPNFRGR---RFQNAHETLIWASPSPKAKGYTFNYDALK------ 172
               LN+I+W       ++  R   R+   H+ ++    +P    Y F+   +       
Sbjct: 131 RECFLNEIIWAY-----DYGARAKNRWPTKHDNILVYVKNPTK--YHFDNAEVDREPYMA 183

Query: 173 ------AANEDVQMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
                 A  E  ++ +D W   I S + R +       +PTQKPE L+ RI+ +S++ GD
Sbjct: 184 PGLVTPAKRELGKLPTDVWWHTIVSPTGREKTG-----YPTQKPEGLVRRIVSASSREGD 238

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
             LD F GSGT GAVA KL R+F+ ++  +  I++  KR+ +
Sbjct: 239 WCLDFFAGSGTLGAVAAKLGRNFVCVDQNEQAIEVMRKRLGT 280


>gi|193070202|ref|ZP_03051147.1| DNA methylase family protein [Escherichia coli E110019]
 gi|192956521|gb|EDV86979.1| DNA methylase family protein [Escherichia coli E110019]
          Length = 227

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 105/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I G+ + V+   P+ +VD I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFILGDCVRVMATFPSNAVDFILTDPPY---LVGFRDRSGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPALPQKPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|332655236|ref|ZP_08420976.1| DNA (cytosine-5-)-methyltransferase [Ruminococcaceae bacterium D16]
 gi|332515741|gb|EGJ45351.1| DNA (cytosine-5-)-methyltransferase [Ruminococcaceae bacterium D16]
          Length = 328

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 126/330 (38%), Gaps = 93/330 (28%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD-AVTDSWDK 74
           +F   D I  G+ + +L+ LP  SV      PPY            ++L D  +     +
Sbjct: 12  VFIELDIIHTGDCLKILKTLPDDSVHCCVTSPPY------------YALRDYGMEAQIGR 59

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWV---------------IGSYHNIFRIGTM-- 117
            ++ + Y +         RRVL+P+GTLW+               +   +   R G    
Sbjct: 60  ETTPKEYISRLTEVFTEVRRVLRPDGTLWLNISDTYAGKGNQGDFVDPKNPNGRTGQAVA 119

Query: 118 -----------------------LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
                                  L++  +++ NDI+W K NPMP     R    +E +  
Sbjct: 120 LNNKVEGCKPKDMIGIPWMLAFALRDTGWYLRNDIIWMKDNPMPESVKDRCTRCYEHIFL 179

Query: 155 ASPSPKAKGYTFNYDA----------------LKAANEDVQMRSDWLIPICSGSER---- 194
            S   K+K Y F+Y A                +K  N+  +       P      R    
Sbjct: 180 FS---KSKKYFFDYKAISEPIAPATAERLKRGMKGGNKYGKPVPGQPQPQSINRPREHGE 236

Query: 195 --------LRNK-DGEKL--------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                   LRNK D  K+        H    P  L+   L++    G I+LDPF GSGT+
Sbjct: 237 IKDCDINPLRNKRDVWKINTVPFKGGHYAAYPPKLVETCLLAGCPEGGIVLDPFMGSGTT 296

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           G VA ++ R F+G+E+  +Y ++A KRI  
Sbjct: 297 GMVASQMGRHFVGVELNPEYTELAYKRIGG 326


>gi|168770617|ref|ZP_02795624.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4486]
 gi|300993882|ref|ZP_07180587.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 200-1]
 gi|189360495|gb|EDU78914.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4486]
 gi|300305030|gb|EFJ59550.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 200-1]
          Length = 227

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 107/254 (42%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPY---LVGFRDRQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R  +  +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+ +VQ
Sbjct: 196 QYHRAGQQRLTAVQ 209


>gi|317181432|dbj|BAJ59216.1| Type II restriction enzyme M protein [Helicobacter pylori F57]
          Length = 134

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 66/115 (57%), Gaps = 6/115 (5%)

Query: 150 ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
           E +IWA  S K K + FNY+ LK  N D QM   W  P  +  E+   K     HPTQKP
Sbjct: 6   EQIIWARKSHKHK-HVFNYEVLKKINNDKQMHDVWSFPAIAPWEKTNGK-----HPTQKP 59

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE + +++ I+  R
Sbjct: 60  LALLVRLLLMASNENSLIGDPFSGSSTTGIAANLLKRQFIGIEKESEFVKISMDR 114


>gi|189346320|ref|YP_001942849.1| DNA methylase N-4/N-6 domain protein [Chlorobium limicola DSM 245]
 gi|189340467|gb|ACD89870.1| DNA methylase N-4/N-6 domain protein [Chlorobium limicola DSM 245]
          Length = 293

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 123/295 (41%), Gaps = 66/295 (22%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            E K  +  G+ +++L++LP  SVDLIF  PPY  Q   + Y   H          DK+ 
Sbjct: 1   MEIKTDLYLGDCLNILKELPDNSVDLIFTSPPYADQ-REKTYGGIHP---------DKYV 50

Query: 77  SFEAYDAFTRAWLLACR----RVLKPNGTLW------VIGSYHNIFRIGTML----QNLN 122
                     AW L       RVLKP GT        V+    + + +  +L    Q   
Sbjct: 51  ----------AWFLPIAEQLLRVLKPTGTFVLNIKEKVVNGERSTYVMELILEMKRQQGW 100

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA------------ 170
           FW   + +W K N  P     RF+++ E LI  +   K+K +  N +             
Sbjct: 101 FWT-EEFIWHKKNCYPGKWPNRFRDSWERLIQFN---KSKRFYMNQETVMVPMGEWSKSR 156

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK----------------PEALLS 214
           LK  +E  + R +  +    G       D EK +PT                  P+ L  
Sbjct: 157 LKRLSETDKTRDESKVGSGFGKNISNWLDREKAYPTNVLHLATECNNKNHSAAFPQGLPE 216

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
             +   TK GD +LDPF GSGT+ AVAK+++R+ IGIE+  +Y ++    +   +
Sbjct: 217 WFIKLFTKEGDTVLDPFMGSGTTNAVAKRMKRNSIGIEIVPEYYEMVKNELEPTE 271


>gi|189461076|ref|ZP_03009861.1| hypothetical protein BACCOP_01723 [Bacteroides coprocola DSM 17136]
 gi|265753960|ref|ZP_06089315.1| DNA methylase [Bacteroides sp. 3_1_33FAA]
 gi|189432166|gb|EDV01151.1| hypothetical protein BACCOP_01723 [Bacteroides coprocola DSM 17136]
 gi|263235674|gb|EEZ21198.1| DNA methylase [Bacteroides sp. 3_1_33FAA]
          Length = 270

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 119/268 (44%), Gaps = 48/268 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+I   + +  ++++   SVD I AD PY     G L R + S+      +WD+   F A
Sbjct: 5   DRIYLMDCMEGMKQIADSSVDAIIADLPY-----GVLNRSNPSV------NWDRQIPFAA 53

Query: 81  -YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            ++ +        RR+ KP+  + + G    +F    ML     W  N +VW+K     +
Sbjct: 54  LWEQY--------RRITKPDSPIILFG--QGLFSAWLMLSQPRLWRYN-LVWQKDRVTGH 102

Query: 140 FRGRRFQ-NAHETLI-----------WASPSP---------KAKGYTFN-YDALKAANED 177
              +R     HE ++             +P P         K +G+T   Y  +K +   
Sbjct: 103 LNAKRMPLRQHEDILVFYKKQPVYHPQMTPCPPERRNHGRRKTEGFTNRCYGTMKLSPVR 162

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           +   +D   P         +K G   HPTQKP AL+  ++ + T  GD++LD   GSGT+
Sbjct: 163 I---ADDKYPTSVIFMPKEHKKGAFYHPTQKPVALMEYLIRTYTDEGDVVLDNCIGSGTT 219

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRI 265
              A +  R +IG E++Q Y +IA +RI
Sbjct: 220 AVAAIRTGRHYIGFEIEQVYCEIAERRI 247


>gi|302651686|ref|YP_003829067.1| hemaglutinin-associated protein [Escherichia coli]
 gi|302310089|gb|ADL13961.1| Hap [Escherichia coli]
          Length = 227

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 103/258 (39%), Gaps = 61/258 (23%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPY---LVGFRDRSGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                       RVLK +  +     +H I R     +   F +   +V           
Sbjct: 60  ------------RVLKKDALMVSFYGWHRIDRFMAAWKRAGFSVAGHLV----------- 96

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS-ERLRNK-- 198
                                 +T NY +  A    V  R +    +  GS  R RN   
Sbjct: 97  ----------------------FTKNYTSKSAY---VAYRHECAYILAKGSPARPRNPLP 131

Query: 199 -------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
                   G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGI
Sbjct: 132 DVLGWKYSGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGI 191

Query: 252 EMKQDYIDIATKRIASVQ 269
           E+ + Y     +R+A+VQ
Sbjct: 192 ELLEQYHRAGQQRLAAVQ 209


>gi|321271502|gb|ADW79591.1| putative DNA methyltransferase [Escherichia coli]
 gi|332346561|gb|AEE59893.1| putative DNA methyltransferase [Escherichia coli UMNK88]
          Length = 227

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 107/254 (42%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY   L G   R   ++    TD W + +  E +
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPY---LVGFRDRSGRTIAGDKTDEWLQPACNEMF 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|284924688|emb|CBG27883.1| DNA methylase [Escherichia coli]
 gi|323158252|gb|EFZ44338.1| DNA methylase family protein [Escherichia coli E128010]
          Length = 227

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 104/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I G+ + V+   P  +VD I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFILGDCVRVMATFPGNAVDFILTDPPY---LVGFRDRSGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPALPQKPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|317181064|dbj|BAJ58850.1| fusion protein of dpnA and hopN [Helicobacter pylori F32]
          Length = 95

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 46/62 (74%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPTQK  AL+ +I+   T P DI+LDPF GSGT+G   K+L+R+FIGIE +++Y  IA K
Sbjct: 31  HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLKRNFIGIESEKEYFQIAKK 90

Query: 264 RI 265
           R+
Sbjct: 91  RL 92


>gi|58000334|ref|YP_190175.1| putative methylase [Escherichia coli]
 gi|307313336|ref|ZP_07592959.1| DNA methylase N-4/N-6 domain protein [Escherichia coli W]
 gi|57903234|gb|AAW58864.1| DNA methylase [Escherichia coli]
 gi|306906758|gb|EFN37268.1| DNA methylase N-4/N-6 domain protein [Escherichia coli W]
 gi|315063813|gb|ADT78139.1| putative methylase [Escherichia coli W]
 gi|323380952|gb|ADX53219.1| DNA methylase N-4/N-6 domain protein [Escherichia coli KO11]
          Length = 227

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 107/254 (42%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY   L G   R   ++    TD W + +  E +
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPY---LVGFRDRSGRTIAGDKTDEWLQPACNEMF 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|218962098|ref|YP_001741873.1| BstYI methyltransferase [Candidatus Cloacamonas acidaminovorans]
 gi|167730755|emb|CAO81667.1| BstYI methyltransferase [Candidatus Cloacamonas acidaminovorans]
          Length = 310

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 119/273 (43%), Gaps = 55/273 (20%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           + +G+ + +L+ +P  ++ L+   PPYN+   G+ Y              +K    + Y 
Sbjct: 16  LFQGDCLELLDSIPDAAIQLVVTSPPYNI---GKKY--------------EKRQPLDEYI 58

Query: 83  AFTRAWLLACRRVLKPNGTL-WVIGSY---HNIFRIGTMLQNL----NFWILNDIVWRKS 134
            + +  +  C RVLK +G++ W +G+Y     I  +  +L  +       + N I+W   
Sbjct: 59  DWQKKVITECCRVLKKSGSICWQVGNYIENGEIIPLDILLYPVFAESGLKLRNRIIWHFG 118

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK-------------------AAN 175
           + +     +RF   +E ++W +   K+  Y FN D ++                   + N
Sbjct: 119 HGL--HSSKRFSGRYEVILWFT---KSDEYIFNLDPVRIPQKYPNKKYFKGDKKGELSCN 173

Query: 176 EDVQMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
              +  SD W IP         N   + +HP Q P  L+ R+++S T   D  LDPF G+
Sbjct: 174 PLGKNPSDVWNIPNVKA-----NHIEKTIHPAQFPVELVERLILSMTNENDWTLDPFMGT 228

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           GT+   +    R   G E+  +Y +IA +RI S
Sbjct: 229 GTTQIASLIHNRKSCGAELLDEYYEIALQRINS 261


>gi|7960015|gb|AAF71177.1|AF158026_3 EcoVIII methyltransferase [Escherichia coli]
 gi|1213327|gb|AAA91204.1| EcoVIII modification methylase [Escherichia coli]
          Length = 304

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 126/305 (41%), Gaps = 74/305 (24%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNL----------------------QLN-GQ 56
           K+ +  GNSIS+++KLP++   LI +D PY +                      Q N G 
Sbjct: 13  KNTVTNGNSISLIKKLPSQYAHLILSDIPYGIGAEDWDVLHNNSNNAYLGSSPAQKNAGA 72

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
           +++     ++  +++ DK    E Y  +   W     RVLKP  +  +        R   
Sbjct: 73  IFKKRGKPINGWSEA-DKKIPLE-YQQWCEEWATEWFRVLKPGASAIIFAGRRFSHRCIC 130

Query: 117 MLQNLNFWILNDIVWRK----------------------SNPMPNFRGRRFQNAHETLIW 154
            +++  F + + I W +                      +     +R    Q   E ++W
Sbjct: 131 AMEDAGFNLRDIIAWMRVKAPHRAQRLSCVYERRGDTLNAEKWNGWRVGNLQPTFEPILW 190

Query: 155 ASPSPKAKGY-----------TFNYDALKAAN---EDVQMRSDWLIPICSGSERLRNKDG 200
            S   K  G             +N DA  A N   E+V         I +G     N+ G
Sbjct: 191 FSKPYKIGGTIADNAIIHGVGAYNQDAFVARNGKPENV---------ITAGFS--SNESG 239

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
             LHPTQKP AL+  ++  +T+ G +++DPF GSG++   AK L R +IG E+   Y++ 
Sbjct: 240 --LHPTQKPVALMKTLIELTTQKGQLVIDPFSGSGSTLVAAKDLGRDYIGFEINPTYVET 297

Query: 261 ATKRI 265
           + KR+
Sbjct: 298 SIKRL 302


>gi|329767390|ref|ZP_08258915.1| DNA methylase [Gemella haemolysans M341]
 gi|328836079|gb|EGF85770.1| DNA methylase [Gemella haemolysans M341]
          Length = 157

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 19/162 (11%)

Query: 108 YHNIFRIGTMLQNLN---FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
           + +I R+ T+++  N   F+     +WRK+NPMP      F N++E   W   + K K  
Sbjct: 4   FMSILRVETLVEIANEFGFYYKTTGIWRKTNPMPRNMNLHFVNSNEC--WIYFTYKTKTG 61

Query: 165 TFNYDALKAANEDVQMRSDWL-IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKP 223
           TFN           ++  D++   + +  E+   K     HPTQKP  L    +   +  
Sbjct: 62  TFNNKG--------KLVLDYIETSVTTAREKKLGK-----HPTQKPIILFEHFIRLLSNE 108

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           GD+++DPF GSG+S   + +L R+FI +E+++ Y  +A  R+
Sbjct: 109 GDLVVDPFLGSGSSAIASYRLNRNFIDVELEEKYAKLANMRV 150


>gi|240013324|ref|ZP_04720237.1| putative modification methylase DpnIIB [Neisseria gonorrhoeae
           DGI18]
 gi|240120395|ref|ZP_04733357.1| putative modification methylase DpnIIB [Neisseria gonorrhoeae
           PID24-1]
          Length = 92

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/95 (40%), Positives = 57/95 (60%), Gaps = 5/95 (5%)

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
           +K  N+  QM+  W     + +E+   K     HPTQKP  LL R ++S++  GD+I DP
Sbjct: 1   MKTQNDGKQMKCVWTFAPPNKAEKTFGK-----HPTQKPLPLLERCILSASNIGDLIFDP 55

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           F GSGT+G  A K  R F G E+++D+ ++A KR+
Sbjct: 56  FMGSGTTGVAALKHGRRFCGCELEEDFFELAKKRL 90


>gi|295097803|emb|CBK86893.1| DNA modification methylase [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 230

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 109/251 (43%), Gaps = 47/251 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I G+ + V+ + PA++VD I  DPPY   L G   R   +L    +  W + +  E Y
Sbjct: 3   RFILGDCVQVMSRFPARAVDFILTDPPY---LVGYKDRTGRTLAGDNSSEWLQPACHEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML---QNLNFWILNDIVWRKSNPMP 138
                       RVLK N +L V  S++   R    L   +   F ++  IV+ KS    
Sbjct: 60  ------------RVLK-NDSLMV--SFYAWNRADLFLNAWKTAGFRVVGHIVFAKS---- 100

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
                          +AS S    GYT     L A         D  IP     +     
Sbjct: 101 ---------------YASKS-TFVGYTHESAYLLAKGR--PQTPDRPIPDVIPWK----Y 138

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            G + HPT+KP   L  ++ S T+PG I+LDPF GSG++   A +  R +IGIEM + Y 
Sbjct: 139 TGNRHHPTEKPVQSLRPLIESLTRPGAIVLDPFAGSGSTCVAAAEASRRYIGIEMLEQYH 198

Query: 259 DIATKRIASVQ 269
               +R+A V+
Sbjct: 199 AAGVRRLAQVE 209


>gi|218441210|ref|YP_002379539.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
 gi|218173938|gb|ACK72671.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
          Length = 874

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 140/331 (42%), Gaps = 107/331 (32%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G+S+ VL ++P +S+DLI   PP+ L     + + ++  VDA     D++  +  +D+F 
Sbjct: 19  GDSLKVLSQIPDESIDLICTSPPFAL-----VRKKEYGNVDA-----DEYVQW--FDSFA 66

Query: 86  RAWLLACRRVLKPNGTL-------WVIGS-----YHNIFRIGTMLQN------LNFWILN 127
           + +     R+LK NG+L       W+ G      YH  F +   L        L F++  
Sbjct: 67  QQFY----RILKQNGSLVIDIGGSWIKGYPVRSLYH--FELVMHLCKPRREGGLGFYLAQ 120

Query: 128 DIVWRKSNPMPN------FRGRRFQNAHETLIWAS--PSPKA------KGYTF------- 166
           ++ W     +P        R  R ++A  T+ W S  P PKA      + Y+        
Sbjct: 121 ELYWYNPAKLPTPAEWVTVRRERVKDAVNTIWWLSKDPHPKACNKRVLRPYSKAMENLLK 180

Query: 167 -NYDA-LKAANEDVQMRS--------------------------------DWL------- 185
             YDA L+ +  D+  +                                 DWL       
Sbjct: 181 NGYDAKLRPSGHDISTKFQRNRGGAIPPNIIDAQTTSVATAIGSPVLASFDWLLFNDLAQ 240

Query: 186 -IPICSGS--------ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
            + + S S        +R   ++G K HP + P+AL   I+   T+PGD++LDPF GS  
Sbjct: 241 PVNVISASNTASNDYYQRRCKEEGIKPHPARFPQALPEFIINLCTEPGDLVLDPFCGSNV 300

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           +G VA+ L+R ++ IE+ Q Y+  +  R  +
Sbjct: 301 TGRVAEDLKRYWLAIEIDQGYLKASQYRFET 331


>gi|261840056|gb|ACX99821.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter pylori
           52]
          Length = 72

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/62 (54%), Positives = 45/62 (72%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPTQK  AL+ +I+   T P DI+LDPF GSGT+G   K+L R+FIGIE +++Y  IA K
Sbjct: 8   HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLERNFIGIESEKEYFQIAKK 67

Query: 264 RI 265
           R+
Sbjct: 68  RL 69


>gi|255326978|ref|ZP_05368054.1| site-specific DNA-methyltransferase [Rothia mucilaginosa ATCC
           25296]
 gi|255296195|gb|EET75536.1| site-specific DNA-methyltransferase [Rothia mucilaginosa ATCC
           25296]
          Length = 423

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 130/297 (43%), Gaps = 58/297 (19%)

Query: 10  NENQNSIFEWKDK--IIKGNSISVLEKLPAKSVDLIFADPPYN----------------- 50
           N   +++F+ +    +++ +++  L +LP  +  +I+ DPP+N                 
Sbjct: 19  NRTDSAVFDPQGPSLLVQADNLEYLRELPDGAFTVIYIDPPFNTGKKQTRRTLSAEASEK 78

Query: 51  ---LQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
                  G+ Y      + +  D      SFE Y AF    +    R+L  +GTL++   
Sbjct: 79  GDRTGFKGKSYSSTLQTLASYND------SFEDYWAFLAPRIEQAHRLLAQDGTLYLHLD 132

Query: 108 YHNIFRIGTMLQNL----NFWILNDIVWRKSNPMPNFRGRRFQNAHET-LIWASPSPKAK 162
           +  +  +  M   +    NF  +N+++W       +   RR+   H+  L++A      +
Sbjct: 133 WREVHYVKIMCDMIFGRENF--INELIWAYDYGAKS--TRRWPTKHDNILVYAK---DHR 185

Query: 163 GYTFN--------YDALKAANEDVQMRSD-----WLIPICSGSERLRNKDGEKLHPTQKP 209
            Y FN        Y A     E+   R       W   I S +   R K G   +PTQKP
Sbjct: 186 CYYFNTAEVDREPYMAPGLVTEEKASRGKLPTDVWWHTIVSPTG--REKTG---YPTQKP 240

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
             LL R++ +S++PGD +LD F GSG++GA A +L R F+ ++     I++  KR+ 
Sbjct: 241 TGLLRRMIAASSRPGDWVLDFFAGSGSTGAAAAQLGRKFVCVDQNPPAIEVMAKRLG 297


>gi|166364266|ref|YP_001656539.1| putative adenine-specific DNA-methyltransferase [Microcystis
           aeruginosa NIES-843]
 gi|166086639|dbj|BAG01347.1| putative adenine-specific DNA-methyltransferase [Microcystis
           aeruginosa NIES-843]
          Length = 317

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 124/298 (41%), Gaps = 76/298 (25%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           + +G+S + ++ +P  SV LI   PPYNL                    ++K  S + Y 
Sbjct: 25  LYQGDSNNFIKTIPDNSVSLIITSPPYNL-----------------GKDYEKKISLDTYL 67

Query: 83  AFTRAWLLACRRVLKPNGTL-WVIGSY--------HNIFRIGTMLQNLNFWILNDIVWRK 133
                 +    R+L+ NG++ W +G++         +IF    + + + F++ N IVW  
Sbjct: 68  ETQTKIMREFSRILQDNGSICWQVGNFVQEGEVYPLDIFYY-QLFKQMGFFLRNRIVWHF 126

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK-------------------AA 174
            + +     +RF   +ET++W +   K   Y FN D ++                   + 
Sbjct: 127 GHGL--HTSKRFSGRYETILWLT---KTDKYIFNLDPVRIPAKYPGKRHFKGKNIGKPSG 181

Query: 175 NEDVQMRSD-------------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
           N   +  SD             W IP         N   + +HP Q P  L+ R +++ T
Sbjct: 182 NPLGKNPSDVWEFLAQEWDELLWDIPNVKS-----NHPEKTIHPCQYPIELVERCVLALT 236

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS-------VQPLG 272
             GD + DPF G GTS   +    R  +G E + +Y+ IA +RIA+       ++PLG
Sbjct: 237 NEGDWVFDPFAGVGTSLIASIMHNRRVMGSEKEAEYVKIAQERIAAYLQGNLKIRPLG 294


>gi|296115112|ref|ZP_06833753.1| DNA methylase N-4/N-6 domain protein [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295978213|gb|EFG84950.1| DNA methylase N-4/N-6 domain protein [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 288

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 116/272 (42%), Gaps = 43/272 (15%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           E   ++++G+ + VL ++PA SVD++   PPYN+ L    Y           D+ D+   
Sbjct: 25  EGPHQLVRGDCLKVLRRMPADSVDVVVTSPPYNIGLRYSTY----------NDTLDEQGY 74

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLW--VIGSYHN---IFRIGTMLQNLNFWILNDIVWR 132
            +   A +R      RRV+KP+G+ +  + GS       F +   L+ L F + N I W 
Sbjct: 75  LDWMVAISR----QVRRVMKPDGSFFLNIAGSSAQPWLPFELMVRLRAL-FALQNHISWV 129

Query: 133 KSNPM---------PNFRGRRFQNAHETLIWASPSPKAKGYTFNYD---------ALKAA 174
           KS  +         P    R     HE L   + S        +             +  
Sbjct: 130 KSISIGAETFGHFKPVNSHRYLHRNHEHLFHLTRSGHVNLQRLDVGVPYMDKSNIVRRGH 189

Query: 175 NEDVQMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
            +D + R D W +P     E ++ K  +  HP   P +L    +    +P  ++LDPF G
Sbjct: 190 RQDRRCRGDTWFVPY----ETVQGKAQKYNHPGTFPVSLPQMCIRLHGRPDAVVLDPFMG 245

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           +GT+   A +     IGI++   Y++IA +R+
Sbjct: 246 TGTTIVAALREGARGIGIDLDSGYVEIARERV 277


>gi|229541605|ref|ZP_04430665.1| DNA methylase N-4/N-6 domain protein [Bacillus coagulans 36D1]
 gi|229326025|gb|EEN91700.1| DNA methylase N-4/N-6 domain protein [Bacillus coagulans 36D1]
          Length = 556

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 130/293 (44%), Gaps = 67/293 (22%)

Query: 16  IFEWKDK---IIKGN---SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           + E+KD    IIKGN   +IS L K     ++LI+ DPPYN                  T
Sbjct: 167 VTEFKDTDNLIIKGNNLLAISSLLKRYEGKINLIYIDPPYN----------------TGT 210

Query: 70  DSWDKFSSFE--AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL----NF 123
           DS+    +F+   +  F +  L   +++L P G ++V   YH +     ++  +    NF
Sbjct: 211 DSFGYNDNFKRSTWLTFMKNRLDIAQKLLSPEGAIYVQLDYHQVHYAKVLMDEIFGESNF 270

Query: 124 WILNDIVWR-------KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY----DALK 172
               +I+WR       K+      R       H+T+++ S   K   +  NY    +  +
Sbjct: 271 Q--REIIWRIGWLSGYKTTDNNWIRN------HDTILFYSKDYKRLKFIKNYIPKSEFKE 322

Query: 173 AAN--------EDVQMRSDW----LIPICSGSERLRNKDGEKLHPT-----QKPEALLSR 215
            AN        EDV   +++     I I S S    +K    L P      QK E L+ R
Sbjct: 323 IANTNIERYPIEDVWNANEYDDLNSIAIVSFSGETVSK---MLTPQDEVKGQKSEKLIER 379

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           I+ + T  GDI+LD F G+GT+ AVA KLRR +I  E    +IDI  +R+  V
Sbjct: 380 IIKAHTNEGDIVLDFFGGTGTTAAVAHKLRRRYIVCEQLDKHIDICIRRMNKV 432


>gi|87199473|ref|YP_496730.1| DNA methylase N-4/N-6 [Novosphingobium aromaticivorans DSM 12444]
 gi|87135154|gb|ABD25896.1| DNA methylase N-4/N-6 [Novosphingobium aromaticivorans DSM 12444]
          Length = 435

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 107/227 (47%), Gaps = 12/227 (5%)

Query: 38  KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK 97
           K++D  F DPPYN+++NG           A+       ++F  + A T   L A   V +
Sbjct: 199 KAIDCAFLDPPYNVKINGHANARGRHREFAMASGEMTTAAFRTFLAET---LGASAAVSR 255

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
           P    +V   + ++  +      +   +LN  VW KSN      G  +++ HE +++   
Sbjct: 256 PGAVHFVCMDWRHMDDVSAAATPVYDDLLNICVWNKSN---AGMGSLYRSKHE-MVFVYR 311

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
            P A     + +A++         + W     +     R +D   LHPT KP A+++  +
Sbjct: 312 VPGAP----HTNAVELGRHGRNRTNVWDYASVNSMRGSRRED-LALHPTVKPVAMVADAI 366

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
              T+ GD++LD F GSGT+   A+++ R+F GI++   Y+D+A  R
Sbjct: 367 CDVTRQGDLVLDIFSGSGTTLIAAERVGRAFRGIDIDPAYVDVALDR 413


>gi|307139302|ref|ZP_07498658.1| putative methylase [Escherichia coli H736]
 gi|331643296|ref|ZP_08344428.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H736]
 gi|331037523|gb|EGI09746.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H736]
          Length = 227

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 104/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I G+ + V+   P  +VD I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFILGDCVRVMATFPGNAVDFILTDPPY---LVGFRDRSGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPALPQKPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IG+E+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGVELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|119385886|ref|YP_916941.1| DNA methylase N-4/N-6 domain-containing protein [Paracoccus
           denitrificans PD1222]
 gi|119376481|gb|ABL71245.1| DNA methylase N-4/N-6 domain protein [Paracoccus denitrificans
           PD1222]
          Length = 225

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 105/257 (40%), Gaps = 55/257 (21%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           ++ +I  + I  ++   + SVD I  DPPY  +      R   ++ +     W       
Sbjct: 9   RNLVINADCIEAMQAFGSGSVDFILTDPPYVTRFRD---RQGRTVANDDNARW------- 58

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                 R       RVLK  G       ++ +       +   F I+  +V+RK     +
Sbjct: 59  -----LRPAFAQMHRVLKDGGFCVSFYGWNKVDLFVEAWKAAGFRIVGHLVFRKRY-ASS 112

Query: 140 FRGRRFQNAHETLIW-------ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
            R  R+++    L+        A P P    + +                          
Sbjct: 113 ARFLRYEHEQAYLLAKGDPESPARPVPDVLDFPYT------------------------- 147

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
                  G KLHPTQKP A L R++ + TKPGD++LDPF GSG++ A A  L R ++G+E
Sbjct: 148 -------GNKLHPTQKPVAALRRLIGAFTKPGDLVLDPFSGSGSTLAAAHLLGRDWLGVE 200

Query: 253 MKQDYIDIATKRIASVQ 269
           +  ++   A KR+A++Q
Sbjct: 201 LDVEHYQTAGKRMAALQ 217


>gi|50346323|ref|NP_052910.2| putative methylase [Plasmid R100]
 gi|133756470|ref|YP_001096426.1| putative methylase [Escherichia coli]
 gi|161343771|ref|NP_957571.2| putative methylase [Escherichia coli]
 gi|301328054|ref|ZP_07221208.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 78-1]
 gi|89033295|gb|ABD59973.1| hypothetical protein [Escherichia coli]
 gi|300845452|gb|EFK73212.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 78-1]
          Length = 227

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 105/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I G+ + V+   P  +VD I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFILGDCVRVMATFPGNAVDFILTDPPY---LVGFRDRSGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|73853262|ref|YP_308758.1| putative methylase [Escherichia coli]
 gi|73476846|gb|AAZ76461.1| DNA methylase [Escherichia coli]
          Length = 228

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 103/258 (39%), Gaps = 61/258 (23%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +    +  R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRDRFGR---TIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                       RVLK +  +     +H I R     +   F +   +V           
Sbjct: 60  ------------RVLKKDALMVSFYGWHRIDRFMAAWKRAGFSVAGHLV----------- 96

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS-ERLRNK-- 198
                                 +T NY +  A    V  R +    +  GS  R RN   
Sbjct: 97  ----------------------FTKNYTSKSAY---VAYRHECAYILAKGSPARPRNPLP 131

Query: 199 -------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
                   G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGI
Sbjct: 132 DVLGWKYSGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGI 191

Query: 252 EMKQDYIDIATKRIASVQ 269
           E+ + Y     +R+A+VQ
Sbjct: 192 ELLEQYHRAGQQRLAAVQ 209


>gi|313885775|ref|ZP_07819522.1| DNA (cytosine-5-)-methyltransferase [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619002|gb|EFR30444.1| DNA (cytosine-5-)-methyltransferase [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 404

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 124/293 (42%), Gaps = 69/293 (23%)

Query: 24  IKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KGN++  L  L  K    V LI+ DPP+N               +  +  ++ + +   
Sbjct: 1   MKGNNLLALHSLKEKYAGKVKLIYIDPPFN--------------TEGDSFEYNDYFNHST 46

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL----NFWILNDIVWRKSNP 136
           +  F +  L     +L  +G +++   ++ +  +  +   +    NF  LN+I+W     
Sbjct: 47  WLTFMKNRLEIAHTLLDSDGLIYIHLDFNEVHYLKILADEIFGRKNF--LNEIIWCYQER 104

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
             +   R F   H+++++ +   K   YTFN + ++    +V ++    +       RLR
Sbjct: 105 ETS--KRFFNRKHDSILFYAKD-KETDYTFNNELIREKYSEVTLKKFKYLDSEGRKYRLR 161

Query: 197 NKDGEKLHP----------------------------------------TQKPEALLSRI 216
            KDG K  P                                        TQKPE L+ + 
Sbjct: 162 TKDG-KSDPAQEDDNTYRQYLDAQSGPLPRDWFMIPFLNQASSERVGFNTQKPEELIKKF 220

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI-DIATKRIASV 268
           +++ +  GDIILD F GSGT+ +VA KL R +IGIE + DYI DI   R+  V
Sbjct: 221 ILAGSNEGDIILDFFAGSGTTLSVAHKLNRKYIGIE-QMDYIKDITVPRLFDV 272


>gi|289661920|ref|ZP_06483501.1| site-specific DNA-methyltransferase [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 234

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 109/258 (42%), Gaps = 38/258 (14%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLV---------DA 67
           K+++++G+++++L  L A S D +  DPPY    L    +   P    V         D 
Sbjct: 2   KNQLLQGDALTILPTLEANSFDALITDPPYASGGLTAAARAKPPSQKYVQGGGPQLHADF 61

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
           V D  D+ S  +    +   WL  C RVLK    + +   +  +      LQ   F    
Sbjct: 62  VGDERDQRSHLK----WMHLWLSECARVLKDGAPVLLFTDWRQLPLTTDALQIAGFTWRG 117

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
             VW K+  +    GR F+N  E ++W S     KG                M  D   P
Sbjct: 118 ITVWDKTEGVRPQLGR-FRNQAEYIVWGS-----KG---------------NMPLDRRAP 156

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           +  G  R   +  +K H T KP  L+ R LV   + G  ++DPF GSGT+   A+     
Sbjct: 157 VLPGVIREAVRKNDKHHLTGKPTELM-RHLVRICEVGGRVIDPFAGSGTTLLAAQLEGYE 215

Query: 248 FIGIEMKQDYIDIATKRI 265
           + GIEM   Y+ +A+ R+
Sbjct: 216 WTGIEMTPHYLQVASDRL 233


>gi|257468542|ref|ZP_05632636.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium
           ulcerans ATCC 49185]
 gi|317062801|ref|ZP_07927286.1| DNA modification methylase M.SthI [Fusobacterium ulcerans ATCC
           49185]
 gi|313688477|gb|EFS25312.1| DNA modification methylase M.SthI [Fusobacterium ulcerans ATCC
           49185]
          Length = 312

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 130/319 (40%), Gaps = 91/319 (28%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           KI+ GNS+ VL+ L  +S+D +   PPY    +  ++GQ+      L   V +  +K   
Sbjct: 3   KIMHGNSLEVLKTLEDESIDCVVTSPPYWQIRDYGVSGQI-----GLESDVNEFLEKL-- 55

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWV-IGSYH--------------------------- 109
               D F         RVLK  GTL+V +G  +                           
Sbjct: 56  ---MDIFDEV-----NRVLKKTGTLFVNMGDTYSNVNAKLAGGTNNKRHGKNNGYKTVPR 107

Query: 110 --NIFRIGTML--QNLNF------WIL-NDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
             NI R   M+  + L        WIL N+I+W+K N +P     RF N  E + + S  
Sbjct: 108 KTNIKRKSKMMIPERLAIKMIESGWILRNEIIWQKPNILPESVNDRFTNDFEKVFFFS-- 165

Query: 159 PKAKGYTFNYDALKAANEDVQMRSDWLIP--------------ICSGSE--RLRNKDGEK 202
            K + Y F       +N+ +    + ++P              +  G E   + N++G  
Sbjct: 166 -KEQKYYFKKQYEPYSNKTLTGFGNGIMPDNTKRLNPGESKAGMREGREWKAVYNENGRN 224

Query: 203 L--------------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
           +              H    PE L+ R L S      ++LDPF GSGT+  VAK L    
Sbjct: 225 MRTVWNIATKGIKEGHFAIFPEELVRRCLDSGCPENGMVLDPFLGSGTTLKVAKSLNMHG 284

Query: 249 IGIEMKQDYIDIATKRIAS 267
           IGIE+K++YIDIA  RI  
Sbjct: 285 IGIELKREYIDIAVGRIGE 303


>gi|315619240|gb|EFU99816.1| DNA methylase family protein [Escherichia coli 3431]
          Length = 227

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 105/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +    +  R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRDRFGR---TIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFGVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPALPQKPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+ +VQ
Sbjct: 196 QYHRAGQQRLTAVQ 209


>gi|315587231|gb|ADU41612.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori 35A]
          Length = 95

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 45/62 (72%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPTQK  AL+ +I+   T P DI+LDPF GSGT+G   K+L R+FIGIE +++Y  IA K
Sbjct: 31  HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLERNFIGIESEKEYFQIAKK 90

Query: 264 RI 265
           R+
Sbjct: 91  RL 92


>gi|28864482|gb|AAO48713.1| BstYI methyltransferase [Geobacillus stearothermophilus]
          Length = 318

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 133/310 (42%), Gaps = 74/310 (23%)

Query: 15  SIFEWK-DKIIK---------GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL 64
           S+FE++ D + K         G+++  L+ LP   V L    PPYN              
Sbjct: 5   SLFEYRIDDVYKEDSEIVFHNGDALEFLKTLPDNLVKLAITSPPYN-------------- 50

Query: 65  VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHN---IFRIG----T 116
              V  S++  +S E Y A   A +    RV+  +G++ W +G+Y N   IF +      
Sbjct: 51  ---VGKSYEVKTSVEEYLATQEAVIEELIRVVDDHGSICWQVGNYVNKGEIFPLDIFYYQ 107

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK---- 172
           + +     + N I+W   + +     +RF   +ETL+W +   K+  YTFN D ++    
Sbjct: 108 IFKKHGLKLRNRIIWHFGHGL--HAKKRFSGRYETLLWFT---KSDDYTFNLDPVRVPAK 162

Query: 173 ---------------AANEDVQMRSD-WLIPICSGSERL-------RNKDGEKLHPTQKP 209
                          + N   +  SD W   +    + L        N   + +HP Q P
Sbjct: 163 YPGKRHYKGDKKGELSGNPKGKNPSDVWEFVVQEWDKELWEIPNVKANHPEKTIHPCQYP 222

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS-- 267
             L+ R +++ T   D +LDP+ G G+S   A K  R  IG++ +++Y++I  +RI    
Sbjct: 223 IELVERCVLALTNENDFVLDPYAGVGSSLIGALKHGRKAIGVDKEKEYVEIGKQRIKDFY 282

Query: 268 -----VQPLG 272
                ++PLG
Sbjct: 283 DGKLKIRPLG 292


>gi|295697913|ref|YP_003602570.1| DNA methylase family protein [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295060025|gb|ADF64762.1| DNA methylase family protein [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 230

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 108/251 (43%), Gaps = 47/251 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I G+ + V+ + PA++VD I  DPPY   L G   R   +L    +  W + +  E Y
Sbjct: 3   RFILGDCVQVMSRFPARAVDFILTDPPY---LVGYKDRTGRTLAGDNSAEWLQPACHEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML---QNLNFWILNDIVWRKSNPMP 138
                       RVLK N +L V  S++   R    L   +   F ++  IV+ KS    
Sbjct: 60  ------------RVLK-NDSLMV--SFYAWNRADLFLNAWKTAGFRVVGHIVFAKS---- 100

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
                    +  T +         GYT     L A         D  IP     +     
Sbjct: 101 -------YASKSTFV---------GYTHESAYLLAKGR--PQTPDRPIPDVIPWK----Y 138

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            G + HPT+KP   L  ++ S T+PG I+LDPF GSG++   A +  R +IGIEM + Y 
Sbjct: 139 TGNRHHPTEKPVQSLRPLIESLTRPGAIVLDPFAGSGSTCVAAAEASRRYIGIEMLEQYH 198

Query: 259 DIATKRIASVQ 269
               +R+A V+
Sbjct: 199 AAGVRRLAQVE 209


>gi|330822157|ref|YP_004350985.1| DNA methylase N-4/N-6 domain protein [Burkholderia gladioli BSR3]
 gi|327374309|gb|AEA65662.1| DNA methylase N-4/N-6 domain protein [Burkholderia gladioli BSR3]
          Length = 218

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 109/251 (43%), Gaps = 45/251 (17%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+ +  L +L  +SVD +  DPPY +       R   S+ +   D W   +  E Y 
Sbjct: 4   LYNGDCLVALPQLARESVDCVITDPPYLVNFRD---RSGRSIANDSNDEWLDPAFIEIY- 59

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
                      RVLK +        ++ + R     ++  F +   IV+ K+      + 
Sbjct: 60  -----------RVLKRDTVCVSFYGWNKVDRFFHAWKSAGFRVCGHIVFTKTYAS---KA 105

Query: 143 RRFQNAHET-LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
              +  HE+  + A   P             AA E+         PI  G  +     G 
Sbjct: 106 GLVKYQHESAYVLAKGRP-------------AAPEN---------PI--GDVQRFEYSGN 141

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HPT+KP + L  ++ S +KPGD ILDPF GSG++   A++L R +IGIE+ + Y   A
Sbjct: 142 KHHPTEKPVSALRTLISSFSKPGDTILDPFAGSGSTCVAARELGRRYIGIELDETYFAAA 201

Query: 262 TKRIASVQPLG 272
             R+++  P+G
Sbjct: 202 KTRLSA--PVG 210


>gi|218295065|ref|ZP_03495901.1| DNA methylase N-4/N-6 domain protein [Thermus aquaticus Y51MC23]
 gi|218244268|gb|EED10793.1| DNA methylase N-4/N-6 domain protein [Thermus aquaticus Y51MC23]
          Length = 237

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 115/250 (46%), Gaps = 40/250 (16%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++  G ++ VL  L   +V+ +  DPPY     G   RP+          + +    E +
Sbjct: 12  RLHHGEALEVLASLKTGAVEAVLTDPPYG---TGHWRRPESGQGADPRAVYGR----EPW 64

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D+++ AWL    RV +                 G +L    F++  D +  ++      R
Sbjct: 65  DSWSLAWLPEALRVAR-----------------GPVL----FFLPQDRL-EEALAFARER 102

Query: 142 GRRFQNAHETLIWASPSPKAK--GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           G  F+     LIW  P P+ +  G  + ++ + A         D  +   + S R   +D
Sbjct: 103 GLPFR----LLIWGKPDPRPRPQGPAYAFEPVLALRSLPGRGKDLFL---ATSPR-PGRD 154

Query: 200 GEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           GE   HP QKP ++++ ++  +++PGD +LDPF GSG++G  A  L R F+G+E +  ++
Sbjct: 155 GEATGHPHQKPVSVMAWLVELASRPGDTLLDPFMGSGSTGVAAVGLGRGFLGVEREASWL 214

Query: 259 DIATKRIASV 268
            +A +R+ S 
Sbjct: 215 QVAERRLRSA 224


>gi|283457686|ref|YP_003362271.1| adenine specific DNA methylase Mod [Rothia mucilaginosa DY-18]
 gi|283133686|dbj|BAI64451.1| adenine specific DNA methylase Mod [Rothia mucilaginosa DY-18]
          Length = 423

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 127/291 (43%), Gaps = 57/291 (19%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYN--------------------LQLNGQLYRPDH 62
           +++ +++  L +LP  +  +I+ DPP+N                        G+ Y    
Sbjct: 34  LVQADNLEYLRELPDGAFTVIYIDPPFNTGKKQTRRTLSAEASEKGDRTGFKGKSYSSTL 93

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL- 121
             + +  D      SFE Y AF    +    R+L  +GTL++   +  +  +  M   + 
Sbjct: 94  QTLASYND------SFEDYWAFLAPRIEQAHRLLAQDGTLYLHLDWREVHYVKIMCDMIF 147

Query: 122 ---NFWILNDIVWRKSNPMPNFRGRRFQNAHET-LIWASPSPKAKGYTFN--------YD 169
              NF  +N+++W       +   RR+   H+  L++A      + Y FN        Y 
Sbjct: 148 GRENF--INELIWAYDYGAKS--TRRWPTKHDNILVYAK---DHRSYYFNTAEVDREPYM 200

Query: 170 ALKAANEDVQMRSD-----WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
           A     E+   R       W   I S +   + K G   +PTQKP  LL R++ +S++PG
Sbjct: 201 APGLVTEEKASRGKLPTDVWWHTIVSPTG--KEKTG---YPTQKPTGLLRRMIAASSRPG 255

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           D +LD F GSG++GA A +L R F+ ++     I++  KR+  V P+   E
Sbjct: 256 DWVLDFFAGSGSTGAAAAQLGRKFVCVDQNPPAIEVMAKRLG-VDPVSFAE 305


>gi|153870455|ref|ZP_01999854.1| DNA methylase N-4/N-6 [Beggiatoa sp. PS]
 gi|152073077|gb|EDN70144.1| DNA methylase N-4/N-6 [Beggiatoa sp. PS]
          Length = 323

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 118/292 (40%), Gaps = 71/292 (24%)

Query: 17  FEWKDKII--KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           F  K +I+   G+   +L  LP  S+ LI   PPYNL   G++Y              +K
Sbjct: 16  FSAKSEIVLYHGDVNELLCTLPDNSISLIVTSPPYNL---GKVY--------------EK 58

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGS-------------YHNIFRIGTMLQN 120
            +S + Y       +    RVLK NG++ W +G+             Y++IF+       
Sbjct: 59  RTSIDQYLEIQTKVIKQLHRVLKENGSICWQVGNFVEKGEVYPLDIFYYDIFK------K 112

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           LN  + N I+W   + +     +R    +ET++W +   K++ YTFN D ++  ++    
Sbjct: 113 LNLKLRNRIIWHFGHGL--HTSKRLSGRYETILWFT---KSEHYTFNLDPVRVPSKYPGK 167

Query: 181 R---------------------------SDWLIPICSGSERLRNKDGEKLHPTQKPEALL 213
           R                            DW            N   + +H  Q P  L+
Sbjct: 168 RHYKGVNKGKPSGNPLGKNPSDVWEIVAQDWEEAFWEIPNVKSNHPEKTIHSCQYPIELV 227

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
            R +++ T   D + DP+ G GTS   A K  R  +G E +  YIDIA +R 
Sbjct: 228 ERCVLALTNENDWVFDPYAGVGTSLIAAIKHNRRAVGSEKRAQYIDIAHERF 279


>gi|300713298|ref|YP_003739337.1| DNA methylase family protein [Erwinia billingiae Eb661]
 gi|299060369|emb|CAX53619.1| DNA methylase family protein [Erwinia billingiae Eb661]
          Length = 226

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 104/258 (40%), Gaps = 61/258 (23%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I+G+ I ++   P ++VD I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFIQGDCIQIMSGFPDRAVDFILTDPPY---LVGFRDRSGRTIAGDKTDEWLQPACHEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                       RVLK +  +     ++   R  +      F I+   V+ K+       
Sbjct: 60  ------------RVLKNDSLMVSFYGWNRADRFISAWTAAGFRIVGHFVFTKT------- 100

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK--- 198
                       +AS S    GYT     +                +  G  RL  K   
Sbjct: 101 ------------YASKSAYV-GYTHECAYV----------------LAKGRPRLPEKPLP 131

Query: 199 -------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
                   G + HPT+KP   L  ++ S T PG I+LDPF GSG+S   A +  R +IGI
Sbjct: 132 DVQGWKYTGNRHHPTEKPVTSLQPLIESFTHPGAIVLDPFAGSGSSCVAALQSGRRYIGI 191

Query: 252 EMKQDYIDIATKRIASVQ 269
           E+ + Y     +R+A+VQ
Sbjct: 192 ELMEKYHRAGQQRLAAVQ 209


>gi|13449148|ref|NP_085364.1| hypothetical protein pWR501_0210 [Shigella flexneri 5a]
 gi|13310696|gb|AAK18520.1|AF348706_209 orf, hypothetical [Shigella flexneri 5a]
 gi|12329114|emb|CAC05845.1| unnamed protein product [Shigella flexneri]
          Length = 227

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 107/254 (42%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPY---LVGFRDRQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R  +  +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+L PF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLGPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|317182587|dbj|BAJ60371.1| fusion protein of dpnA and hopN [Helicobacter pylori F57]
          Length = 95

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 45/62 (72%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPTQK  AL+ +I+   T P DI+LDPF GSGT+G   K+L R+FIGIE +++Y  IA K
Sbjct: 31  HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLERNFIGIESEKEYFQIAKK 90

Query: 264 RI 265
           R+
Sbjct: 91  RL 92


>gi|326783121|ref|YP_004323518.1| DNA adenine methylase [Prochlorococcus phage P-HM2]
 gi|310005539|gb|ADO99927.1| DNA adenine methylase [Prochlorococcus phage P-HM2]
          Length = 266

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 114/271 (42%), Gaps = 60/271 (22%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF----EAY 81
           G+ + +++++P +SVD I  DPPY                   +  WD+   F    E Y
Sbjct: 12  GDCLELMKEIPDESVDFICCDPPYG----------------TTSIKWDEILDFNLMWEQY 55

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN-PMPNF 140
                       R++KP G + + GS    F    +   L  W   +++W K+    P  
Sbjct: 56  G-----------RIIKPKGMMALFGS--QPFSAQLICSKLK-WFKYELIWNKNKCGSPGL 101

Query: 141 RGRRFQNAHETLIWASPSPKA-------KGYTFNYDALKAANEDVQMRSDW---LIPICS 190
              R    HE ++  + +P         KG  F   + K     V  R+D    L P+  
Sbjct: 102 AKYRPMKTHENILLFAKNPGGTYNPIMEKGEPFKRQS-KNPEGYVSKRNDHGYGLKPV-K 159

Query: 191 GSERLRNK-------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           G E    +               +++HPTQKP  +L  ++ + +  GD +LD   GSG++
Sbjct: 160 GFENKGTRYPKSILNISRDFSAQQQVHPTQKPVPVLEWLITTFSNEGDTVLDNCMGSGST 219

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           G  A KL R FIGI+  + Y+ I+ +RI S+
Sbjct: 220 GVAAVKLNRKFIGIDTDEKYVTISRERIESI 250


>gi|293420945|ref|ZP_06661379.1| DNA methylase [Escherichia coli B088]
 gi|291324815|gb|EFE64231.1| DNA methylase [Escherichia coli B088]
          Length = 227

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 105/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPY---LVGFRDRQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKSAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
              R + A+        +   P P   G+ ++                            
Sbjct: 108 VAYRHECAYILAKGRPALPQKPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|218129465|ref|ZP_03458269.1| hypothetical protein BACEGG_01042 [Bacteroides eggerthii DSM 20697]
 gi|254881383|ref|ZP_05254093.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides sp.
           4_3_47FAA]
 gi|217988195|gb|EEC54518.1| hypothetical protein BACEGG_01042 [Bacteroides eggerthii DSM 20697]
 gi|254834176|gb|EET14485.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides sp.
           4_3_47FAA]
          Length = 270

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 118/268 (44%), Gaps = 48/268 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+I   + +  ++++   SVD I AD PY     G L R + S+      +WD+     A
Sbjct: 5   DRIYLMDCMEGMKQIADGSVDAIIADLPY-----GVLNRSNPSV------NWDRQIPLAA 53

Query: 81  -YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            ++ +        RR+ KP+  + + G    +F    ML     W  N +VW+K     +
Sbjct: 54  LWEQY--------RRITKPDSPIILFG--QGLFSAWLMLSQPRLWRYN-LVWQKDRVTGH 102

Query: 140 FRGRR--FQNAHETLIWASPSP-------------------KAKGYTFN-YDALKAANED 177
              +R  F+   + L++    P                   K +G+T   Y  +K +   
Sbjct: 103 LNAKRMPFRQHEDILVFYKKQPAYHPQMTPCPPERRNHGRRKTEGFTNRCYGTMKLSPVR 162

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           +   +D   P         +K G   HPTQKP AL+  ++ + T  GD++LD   GSGT+
Sbjct: 163 I---ADDKYPTSVIFMPKEHKKGAFYHPTQKPVALMEYLIRTYTDEGDVVLDNCIGSGTT 219

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRI 265
              A +  R +IG E++Q Y +IA +RI
Sbjct: 220 AVAAIRTGRHYIGFEIEQAYCEIAERRI 247


>gi|194439829|ref|ZP_03071894.1| DNA methylase family protein [Escherichia coli 101-1]
 gi|194421219|gb|EDX37241.1| DNA methylase family protein [Escherichia coli 101-1]
          Length = 227

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 104/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I G+ + V+   P  +VD I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFILGDCVRVMATFPDNAVDFILTDPPY---LVGFRDRQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPALPQKPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|193063119|ref|ZP_03044211.1| DNA methylase family protein [Escherichia coli E22]
 gi|195940129|ref|ZP_03085511.1| putative methylase [Escherichia coli O157:H7 str. EC4024]
 gi|192931378|gb|EDV83980.1| DNA methylase family protein [Escherichia coli E22]
          Length = 227

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 106/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I G+ + V+   P  +VD I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFILGDCVRVMATFPDNAVDFILTDPPY---LVGFRDRSGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R  +  +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|167619961|ref|ZP_02388592.1| site-specific DNA methyltransferase [Burkholderia thailandensis
           Bt4]
          Length = 280

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 112/258 (43%), Gaps = 36/258 (13%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYN---LQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           D++   +++++   LP  S+D++F DPPY+   L  + +   P    ++  +D+   +  
Sbjct: 42  DRLHATDALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSEKYIN--SDTKAAYVD 99

Query: 78  FE-------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
           FE       A+  +  AWL  CRR LKP G L     +  +  +  ++Q     +    V
Sbjct: 100 FESDNMDQRAWAFWCHAWLTECRRALKPGGLLVCFIDWRQLPTLTDVVQAAGLILRGVAV 159

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W K+      R   F    E ++WAS               + A  D ++    + P   
Sbjct: 160 WDKTPGRTRPRRGGFAQQAEFVVWAS---------------RGAMRDCEVYLPGVFPC-- 202

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
              RL      K H T+KP   ++R +V     G ++ D F GSGT  A A++    +IG
Sbjct: 203 ---RL---PLPKQHVTEKPLD-IAREVVRLVPAGGVVCDLFAGSGTFLAAAREAGLHWIG 255

Query: 251 IEMKQDYIDIATKRIASV 268
            E    Y  IA +R+A++
Sbjct: 256 CETNAAYHAIAAERLAAM 273


>gi|331660288|ref|ZP_08361223.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA206]
 gi|331052555|gb|EGI24591.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA206]
          Length = 227

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 106/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I G+ + V+   P  +VD I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFILGDCVRVMATFPDNAVDFILTDPPY---LVGFRDRQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R  +  +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|217033239|ref|ZP_03438675.1| hypothetical protein HPB128_189g1 [Helicobacter pylori B128]
 gi|298737066|ref|YP_003729596.1| adenine DNA methyltransferase protein [Helicobacter pylori B8]
 gi|216945027|gb|EEC23755.1| hypothetical protein HPB128_189g1 [Helicobacter pylori B128]
 gi|298356260|emb|CBI67132.1| adenine DNA methyltransferase protein [Helicobacter pylori B8]
          Length = 80

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/79 (46%), Positives = 49/79 (62%), Gaps = 7/79 (8%)

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P+ SG E+ +       HPTQK  AL+ +I+   T P DI+LDPF GSGT+G   K L R
Sbjct: 6   PVVSGLEKTK-------HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKNLER 58

Query: 247 SFIGIEMKQDYIDIATKRI 265
            FIGIE +++Y   A KR+
Sbjct: 59  KFIGIESEKEYFQTAQKRL 77


>gi|254388731|ref|ZP_05003964.1| DNA methylase [Streptomyces clavuligerus ATCC 27064]
 gi|294813343|ref|ZP_06771986.1| Putative DNA methylase [Streptomyces clavuligerus ATCC 27064]
 gi|326441721|ref|ZP_08216455.1| DNA methylase [Streptomyces clavuligerus ATCC 27064]
 gi|197702451|gb|EDY48263.1| DNA methylase [Streptomyces clavuligerus ATCC 27064]
 gi|294325942|gb|EFG07585.1| Putative DNA methylase [Streptomyces clavuligerus ATCC 27064]
          Length = 249

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 117/266 (43%), Gaps = 42/266 (15%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNL------QLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +G++++VL+ LP +SVD +  DPPYN       +   +  R  ++  DA  D     ++F
Sbjct: 7   RGDALTVLKSLPDESVDAVITDPPYNSGGRTSSERTARTARAKYTSGDAGHD----LANF 62

Query: 79  -------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
                   +Y A+  A L    R  + +  + V   +         LQ   +     I W
Sbjct: 63  PGENRDQRSYRAWLTALLTESYRAAREHAVVMVFTDWRQEPTTSDALQMAGWTWSGTIPW 122

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
            K    P   G +  +  E ++W        G     D  +          D  +P    
Sbjct: 123 IKPASRPRKGGPKQDS--EFILW--------GVKGTLDKTR----------DLYLPGHYI 162

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           + + R    +++H TQKP  ++ R LV   +PG  +LDPF GSGT+G  A    RSF+G+
Sbjct: 163 ASQPRK---DRVHITQKPVEVM-RQLVQVARPGGTVLDPFTGSGTTGVAALLEGRSFVGV 218

Query: 252 EMKQDYIDIATKRI-ASVQPLGNIEL 276
           E+   Y DIA +R+  +V   G+++L
Sbjct: 219 ELSDHYADIAEQRLREAVLTQGDLDL 244


>gi|119386071|ref|YP_917126.1| DNA methylase N-4/N-6 domain-containing protein [Paracoccus
           denitrificans PD1222]
 gi|119376666|gb|ABL71430.1| DNA methylase N-4/N-6 domain protein [Paracoccus denitrificans
           PD1222]
          Length = 225

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 108/251 (43%), Gaps = 43/251 (17%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           ++ +I G+ I V++     SVD I  DPPY  +      R   ++ +     W       
Sbjct: 9   RNLVINGDCIEVMQAFGTGSVDFILTDPPYVTRFRD---RQGRTVANDDNARW------- 58

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                 R       RVLK  G       ++ +       +   F I+  +V+RK     +
Sbjct: 59  -----LRPAFAQMHRVLKQGGFCVSFYGWNKVDLFVEAWKAAGFRIVGHLVFRKRY-ASS 112

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR-NK 198
            R  R+++    L+       AKG                   D ++P     + L    
Sbjct: 113 ARFLRYEHEQAYLL-------AKG-------------------DPVLPARPVPDVLDFPY 146

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            G KLHPTQKP A L R++ + T+PGD++LDP  GSG++ A A  L R ++G+E+   + 
Sbjct: 147 TGNKLHPTQKPVAALRRLIGAFTQPGDLVLDPLSGSGSTLAAAHLLGRDWLGVELDVAHY 206

Query: 259 DIATKRIASVQ 269
             A KR+A++Q
Sbjct: 207 QTAGKRMAALQ 217


>gi|317178367|dbj|BAJ56155.1| fusion protein of dpnA and hopN [Helicobacter pylori F30]
          Length = 95

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 46/62 (74%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPTQK  AL+ +I+   T P DI+LDPF GSGT+G   K+L+R+FIGIE +++Y  I+ K
Sbjct: 31  HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLKRNFIGIESEKEYFQISKK 90

Query: 264 RI 265
           R+
Sbjct: 91  RL 92


>gi|228941076|ref|ZP_04103633.1| DNA methylase N-4/N-6 [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228974008|ref|ZP_04134582.1| DNA methylase N-4/N-6 [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228980596|ref|ZP_04140905.1| DNA methylase N-4/N-6 [Bacillus thuringiensis Bt407]
 gi|228779157|gb|EEM27415.1| DNA methylase N-4/N-6 [Bacillus thuringiensis Bt407]
 gi|228785734|gb|EEM33739.1| DNA methylase N-4/N-6 [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228818619|gb|EEM64687.1| DNA methylase N-4/N-6 [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 301

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 87/192 (45%), Gaps = 37/192 (19%)

Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
           +R+   LQ   +++  DIVW K N MP     R   +HE +   S SPK   Y ++++++
Sbjct: 106 WRVAFALQQDGWYLRQDIVWNKPNAMPESVRDRPTKSHEYIFLLSKSPK---YYYDHESI 162

Query: 172 KA----ANEDVQMRSDWLIPICS---------------GSERLR---------------N 197
           K       +DV+       P                  G E  R                
Sbjct: 163 KEPAVYGQQDVRGSEGAFGPPQRAKRTSKEKGSFNGKYGHEAFRAIRDKRNKRSVWTVAT 222

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K  ++ H    PEAL+   +++      I++DPFFGSGT G VA K  R+FIGIE+   Y
Sbjct: 223 KPLKEAHFATFPEALIEPCILAGAPAEGIVMDPFFGSGTVGRVAAKHNRNFIGIELNPGY 282

Query: 258 IDIATKRIASVQ 269
           I+I+ + +++VQ
Sbjct: 283 IEISDRLLSNVQ 294


>gi|241889780|ref|ZP_04777078.1| DNA methylase [Gemella haemolysans ATCC 10379]
 gi|241863402|gb|EER67786.1| DNA methylase [Gemella haemolysans ATCC 10379]
          Length = 178

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 22/176 (12%)

Query: 94  RVLKPNGTLWVIGSYHNIFRIGTMLQNLN---FWILNDIVWRKSNPMPNFRGRRFQNAHE 150
           R+LK   ++ V  S   I R  T+++  N   F+     +W K+NPMP      F N++E
Sbjct: 14  RILKNGASMIVFMS---ILRGETLVEIANKFGFYYKTTGIWHKTNPMPRNMNLHFVNSNE 70

Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL-IPICSGSERLRNKDGEKLHPTQKP 209
              W   + K K  TFN           ++  D++   + +  E+   K     HPTQKP
Sbjct: 71  C--WIYFTYKTKTRTFNNKG--------KLVLDYIETSVTTAREKKLGK-----HPTQKP 115

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
             L    +   +  GD+++DPF GSG+S   + +L R+FIG+E+++ Y  +   R+
Sbjct: 116 IILFEHFIRLLSNKGDLVVDPFLGSGSSAIASYRLNRNFIGVELEEKYAKLVNMRV 171


>gi|228924788|ref|ZP_04087951.1| DNA methylase N-4/N-6 [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228834891|gb|EEM80367.1| DNA methylase N-4/N-6 [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 301

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 87/192 (45%), Gaps = 37/192 (19%)

Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
           +R+   LQ   +++  DIVW K N MP     R   +HE +   S SPK   Y ++++++
Sbjct: 106 WRVAFALQQDGWYLRQDIVWNKPNAMPESVRDRPTKSHEYIFLLSKSPK---YYYDHESI 162

Query: 172 KA----ANEDVQMRSDWLIPICS---------------GSERLR---------------N 197
           K       +DV+       P                  G E  R                
Sbjct: 163 KEPAVYGQQDVRGSEGAFGPPQRAKRENKEKGSFNGKYGHEAFRAIRDKRNKRSVWTVST 222

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K  ++ H    PEAL+   +++      I++DPFFGSGT G VA K  R+FIGIE+   Y
Sbjct: 223 KPLKEAHFATFPEALIEPCILAGAPAEGIVMDPFFGSGTVGRVAAKHNRNFIGIELNPGY 282

Query: 258 IDIATKRIASVQ 269
           I+I+ + +++VQ
Sbjct: 283 IEISDRLLSNVQ 294


>gi|205320897|gb|ACI03011.1| hypothetical protein V35_57 [uncultured bacterium HHV35]
          Length = 577

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 132/304 (43%), Gaps = 65/304 (21%)

Query: 5   NSLAINEN--QNSIFEWKDK---IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQ 56
           NS    EN  Q  I E+ ++   IIKGN++  L  L    A S+DLI+ DPP+N + +  
Sbjct: 153 NSKRYTENGVQEDIAEFTNQDNLIIKGNNLIALHSLKERYAGSIDLIYIDPPFNTEHDSF 212

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
            Y              DKF+    +  F +  L   R +L  +GT++V   ++    +  
Sbjct: 213 KYN-------------DKFNE-STWLTFMKNRLEIARDLLSVSGTIYVHIDHNEGHYLKV 258

Query: 117 MLQNL--NFWILNDIVWRKS--NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
           ++  +    +  N+I+WR S  N   N+    F+  H++ I+      ++ +   ++   
Sbjct: 259 LMDEIFGRQYFRNEIIWRYSGWNKKLNYG---FEKRHDS-IFVYAKSDSQYFESYFEKWA 314

Query: 173 AANEDVQMRSDWLIPICSGSE---------------------------------RLRNKD 199
           +  E V+ R   L+    G E                                 +L N  
Sbjct: 315 SKEEYVKKRKQKLLTDTDGREYVLSDAGGGNRTKVFIEDVLSKGVVVDDVWDIDKLNNSA 374

Query: 200 GEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            E +   +QK EALL RI+ +S  P  I+LD   GSGT+ A A K+ R +IGIE + DYI
Sbjct: 375 KESVGFASQKKEALLERIISASCPPNGIVLDFHLGSGTTCAAAHKMGRRYIGIE-QMDYI 433

Query: 259 DIAT 262
           +  T
Sbjct: 434 NETT 437


>gi|157149426|ref|YP_001451454.1| putative methylase [Escherichia coli E24377A]
 gi|157076593|gb|ABV16305.1| DNA methylase family protein [Escherichia coli E24377A]
          Length = 227

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 104/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I G+ + V+   P  +VD I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFILGDCVRVMATFPDNAVDFILTDPPY---LVGFRDRQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPALPQKPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|270208491|ref|YP_003329265.1| DNA methylase family protein [Klebsiella pneumoniae]
 gi|283826853|ref|YP_003377724.1| DNA methylase family protein [Shigella sonnei]
 gi|218546527|gb|ACK98916.1| DNA methylase family protein [Klebsiella pneumoniae]
 gi|283466745|emb|CBI12406.1| DNA methylase family protein [Shigella sonnei]
          Length = 227

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 104/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I G+ + V+   P  +VD I  DPPY   L G   R   ++   V D W + +S E Y
Sbjct: 3   RFILGDCVRVMATFPDNAVDFILTDPPY---LVGFRDRSGRTIAGDVNDDWLQPASNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ I R     +   F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRIDRFMAAWKRAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPALPQKPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|317178081|dbj|BAJ55870.1| fusion protein of dpnA and hopN [Helicobacter pylori F16]
          Length = 95

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/62 (54%), Positives = 45/62 (72%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPTQK  AL+ +I+   T P DI+LDPF GSGT+G   K+L R+FIGIE +++Y  IA K
Sbjct: 31  HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLERNFIGIESEKEYFQIAKK 90

Query: 264 RI 265
           R+
Sbjct: 91  RL 92


>gi|283778011|ref|YP_003368766.1| DNA methylase N-4/N-6 domain-containing protein [Pirellula staleyi
           DSM 6068]
 gi|283436464|gb|ADB14906.1| DNA methylase N-4/N-6 domain protein [Pirellula staleyi DSM 6068]
          Length = 314

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 127/298 (42%), Gaps = 75/298 (25%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++ G+    L+ LP   VD +   PPY  Q +   Y  + + V        + S  E  D
Sbjct: 24  VLHGDCEEHLKALPDSFVDCVVTSPPYFQQRD---YEGESAQVG------QEESPAEYVD 74

Query: 83  AFTRAWLLACRRVLKPNGTLW-VIGS-YHN------IFRIGTMLQNLNFWILNDIVWRKS 134
             TR +    +R L   GTLW VIG  Y N       +R+   L +  + + +D +W K 
Sbjct: 75  RLTRIFS-QVQRTLTARGTLWLVIGDKYQNGSQLGMPWRVALALIDSGWRLRSDCIWHKP 133

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN----EDVQMRSD------- 183
           N MP+    R    HE + + +   K+  Y ++ DA++  +    E+ QMR         
Sbjct: 134 NAMPSPVKNRPTTDHEYVFFFT---KSADYFYDADAIREPHVTFSENSQMRGGRNHFGKR 190

Query: 184 ----------------------------------WLIPICSGSERLRNKDGEKLHPTQKP 209
                                             W IP+       +N+D    H    P
Sbjct: 191 GGTPEAGKNGGSSNLHDGRWDQAFHPLGRNKRTVWSIPLS------KNRDA---HFAVFP 241

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           E+L+   + + +  G ++LDPF GSGT+  VA++L R ++GI+  ++Y+++  +R+A+
Sbjct: 242 ESLVRTCISAGSPAGGLVLDPFAGSGTTLLVARELGRRYLGIDCAKEYVELIERRLAA 299


>gi|91206320|ref|YP_538674.1| hypothetical protein UTI89_P075 [Escherichia coli UTI89]
 gi|191174406|ref|ZP_03035910.1| DNA methylase family protein [Escherichia coli F11]
 gi|218692919|ref|YP_002406031.1| putative methylase [Escherichia coli UMN026]
 gi|237702490|ref|ZP_04532971.1| DNA modification methylase [Escherichia sp. 3_2_53FAA]
 gi|256855314|ref|YP_003162558.1| putative methylase [Escherichia coli]
 gi|293404634|ref|ZP_06648627.1| methylase [Escherichia coli FVEC1412]
 gi|300898234|ref|ZP_07116587.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 198-1]
 gi|91075771|gb|ABE10651.1| hypothetical protein UTI89_P075 [Escherichia coli UTI89]
 gi|190905339|gb|EDV64974.1| DNA methylase family protein [Escherichia coli F11]
 gi|218350082|emb|CAQ87499.1| putative Site-specific DNA-methyltransferase [Escherichia coli
           UMN026]
 gi|226903271|gb|EEH89530.1| DNA modification methylase [Escherichia sp. 3_2_53FAA]
 gi|256275526|gb|ACU68799.1| putative methyltransferase protein [Escherichia coli]
 gi|281181684|dbj|BAI58013.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|291428346|gb|EFF01372.1| methylase [Escherichia coli FVEC1412]
 gi|300358076|gb|EFJ73946.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 198-1]
 gi|307629844|gb|ADN74147.1| putative methylase [Escherichia coli UM146]
 gi|315291423|gb|EFU50783.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 153-1]
 gi|323954226|gb|EGB50014.1| DNA methylase [Escherichia coli H263]
 gi|324005838|gb|EGB75057.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 57-2]
          Length = 227

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 104/258 (40%), Gaps = 61/258 (23%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY   L G   R   ++   V D W + +S E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPY---LVGFRDRSGRTIAGDVNDDWLQPASNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                       RVLK +  +     ++ + R     +   F +   +V           
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKRAGFSVAGHLV----------- 96

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS-ERLRNK-- 198
                                 +T NY +  A    V  R +    +  GS  R RN   
Sbjct: 97  ----------------------FTKNYTSKSAY---VAYRHECAYILAKGSPARPRNPLP 131

Query: 199 -------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
                   G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGI
Sbjct: 132 DVLGWKYSGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGI 191

Query: 252 EMKQDYIDIATKRIASVQ 269
           E+ + Y     +R+A+VQ
Sbjct: 192 ELLEQYHRAGQQRLAAVQ 209


>gi|300819994|ref|ZP_07100174.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 107-1]
 gi|300527443|gb|EFK48505.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 107-1]
 gi|321271401|gb|ADW79491.1| putative DNA methyltransferase [Escherichia coli]
 gi|323133080|gb|ADX20508.1| putative methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323959159|gb|EGB54825.1| DNA methylase [Escherichia coli H489]
          Length = 227

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 107/254 (42%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY   L G   R   ++    TD W + +  E +
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPY---LVGFRDRSGRTIAGDKTDEWLQPACNEMF 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ + T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIENFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|229051402|ref|ZP_04194907.1| DNA methylase N-4/N-6 [Bacillus cereus AH676]
 gi|228721971|gb|EEL73411.1| DNA methylase N-4/N-6 [Bacillus cereus AH676]
          Length = 301

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 86/192 (44%), Gaps = 37/192 (19%)

Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
           +R+   LQ   +++  DIVW K N MP     R   +HE +   S SPK   Y ++++++
Sbjct: 106 WRVAFALQQDGWYLRQDIVWNKPNAMPESVRDRPTKSHEYIFLLSKSPK---YYYDHESI 162

Query: 172 KA----ANEDVQMRSDWLIPICS---------------GSERLR---------------N 197
           K       +DV+       P                  G E  R                
Sbjct: 163 KEPAVYGQQDVRGSEGAFGPPQRAKRTSKEKGSFNGKYGHEAFRAIRDKRNKRSVWTVST 222

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K  ++ H    PEAL+   +++      I++DPFFGSGT G VA K  R+FIGIE+   Y
Sbjct: 223 KPLKEAHFATFPEALIEPCILAGAPAEGIVMDPFFGSGTVGRVAAKHNRNFIGIELNPGY 282

Query: 258 IDIATKRIASVQ 269
           I+I+ + ++ VQ
Sbjct: 283 IEISDRLLSDVQ 294


>gi|218296686|ref|ZP_03497404.1| DNA methylase N-4/N-6 domain protein [Thermus aquaticus Y51MC23]
 gi|218242999|gb|EED09532.1| DNA methylase N-4/N-6 domain protein [Thermus aquaticus Y51MC23]
          Length = 237

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 115/250 (46%), Gaps = 40/250 (16%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++  G ++ VL  L   +V+ +  DPPY     G   RP+          + +    E +
Sbjct: 12  RLHHGEALEVLASLKTGAVEAVLTDPPYG---TGHWRRPESGQGADPRAVYGR----EPW 64

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D+++ AWL    RV +                 G +L    F++  D +  ++      R
Sbjct: 65  DSWSLAWLPEALRVAR-----------------GPVL----FFLPQDRL-EEALAFARER 102

Query: 142 GRRFQNAHETLIWASPSPKAK--GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           G  F+     LIW  P P+ +  G  + ++ + A         D  +   + S R   +D
Sbjct: 103 GLPFR----LLIWGKPDPRPRPQGPAYAFEPVLALRGLPGRGKDLFL---ATSPR-PGRD 154

Query: 200 GEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           GE   HP QKP ++++ ++  +++PGD +LDPF GSG++G  A  L R F+G+E +  ++
Sbjct: 155 GEATGHPHQKPVSVMAWLVELASRPGDTLLDPFMGSGSTGVAAVGLGRGFLGVEREASWL 214

Query: 259 DIATKRIASV 268
            +A +R+ S 
Sbjct: 215 QVAERRLRSA 224


>gi|162146214|ref|YP_001600673.1| modification methylase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161784789|emb|CAP54331.1| putative modification methylase [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 226

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 112/258 (43%), Gaps = 41/258 (15%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
           +  N N+  ++++ I+ G+S+ ++  LP  SVD I  DPPY +   G+  R   +  +A 
Sbjct: 1   MTGNTNTATDFRNTILNGDSVQLMRALPRNSVDFILTDPPYLVNYQGRDGRKVRNDDNAC 60

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
                          + R       RVLK  G       ++ I       +   F ++  
Sbjct: 61  ---------------WLRPAFNQMHRVLKWGGFAVSFYGWNRIDLFADAWKAAGFRMVGH 105

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
           IV+RKS    + R  R+++    L+       AKG        K   + + M        
Sbjct: 106 IVFRKSYSSSS-RFLRYEHESAYLL-------AKGNVM--PPAKPIPDVLDM-------- 147

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
                      G KLHPTQKP A L  ++ +    G ++LDPF GSG+S   A+ L R +
Sbjct: 148 --------PYSGNKLHPTQKPVASLLPLVETFCPVGGLVLDPFAGSGSSLVAAQHLGRDW 199

Query: 249 IGIEMKQDYIDIATKRIA 266
           +G+E+  D+   AT+R+A
Sbjct: 200 LGMELDPDHAATATRRLA 217


>gi|158520956|ref|YP_001528826.1| DNA methylase N-4/N-6 domain-containing protein [Desulfococcus
           oleovorans Hxd3]
 gi|158509782|gb|ABW66749.1| DNA methylase N-4/N-6 domain protein [Desulfococcus oleovorans
           Hxd3]
          Length = 301

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 125/267 (46%), Gaps = 59/267 (22%)

Query: 29  ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
           I V+  + ++SVD IFADPP+NL    ++Y   +++ D +T+        + Y ++ + W
Sbjct: 52  IKVIPYVHSESVDTIFADPPFNL---SKIY--GNNVNDNLTE--------KEYLSWCKTW 98

Query: 89  LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN--------LNFWILNDIVWRKSNPMPNF 140
           L  C RVLKP G +++    +N+ +   +L N           WI  DI  + S P+P  
Sbjct: 99  LDQCIRVLKPGGAIFI----YNLPKWNIILGNHLSEAGMTFRHWIAVDI--KLSLPIP-- 150

Query: 141 RGRRFQNAHETLIWASPSPKA------------------KGYTFNYDALKAANEDVQMRS 182
            GR + + +  L +    PK                   K Y  +  A+      V +  
Sbjct: 151 -GRLYPSHYSMLYYTKGKPKTFRRVRTPIEVCRHCGKEIKDYGGHRRAMNPNG--VNLTD 207

Query: 183 DW--LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
            W  + P+     + R +   +L        LL R++  ST+  DI+LDPF GSGT+  V
Sbjct: 208 VWHDITPVRHWKFKSRRRSANQL-----STKLLERVIQLSTQEYDIVLDPFGGSGTTYDV 262

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIAS 267
            ++L+R +IGIE++    D+  +R+ +
Sbjct: 263 CERLQRHWIGIEIES--CDVIIERLQT 287


>gi|153951324|ref|YP_001398064.1| DNA methylase [Campylobacter jejuni subsp. doylei 269.97]
 gi|152938770|gb|ABS43511.1| DNA methylase [Campylobacter jejuni subsp. doylei 269.97]
          Length = 250

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 118/265 (44%), Gaps = 46/265 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I+  + I  + K+   S+DLI ADPPY  Q+ G+               +  F     Y
Sbjct: 4   EIVNSDIIEYITKIADNSIDLIIADPPY-FQIKGEF-------------DFGVFKDKHEY 49

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHN----IFRIGTMLQNLNFWILNDIVWRKSNPM 137
            ++ + WL+  +R+LK  G++ + GS  N      R+  M+++ N ++  + + ++    
Sbjct: 50  LSWCKKWLIESKRILKDTGSMILWGSVGNREITFARLAIMIEDENIFLRKNWITQR---- 105

Query: 138 PNFRG----RRFQNAHETLIWASPSPKAKGYTFN--YDALKAANEDVQMRSDWLIPICSG 191
            N RG      + +  E  ++ +   K+  YTFN  Y   K+  +D         P  + 
Sbjct: 106 -NTRGIGTKTNYMSVREDFLFLT---KSNNYTFNIPYTNEKSTRKDFGANGK---PRKNT 158

Query: 192 SERLRN----------KDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
            +R+ N             E+  HPT K + L  RI+ + +  GD I  PF GSG+    
Sbjct: 159 HKRVSNVWADIAEASQSSIERCNHPTVKAQKLCDRIIQTHSNEGDTIFVPFVGSGSEIIS 218

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRI 265
           A +  R   G E+ ++Y ++A  R+
Sbjct: 219 AIRNNRKAFGCEINKEYCNLAKDRV 243


>gi|326784622|ref|YP_004324887.1| DNA adenine methylase [Prochlorococcus phage P-SSM7]
 gi|310004655|gb|ADO99047.1| DNA adenine methylase [Prochlorococcus phage P-SSM7]
          Length = 323

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 25/180 (13%)

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED----- 177
           +++  DI+W K NPMP     R   +HE +   S   K K Y ++ +++K   +D     
Sbjct: 139 WYLRQDIIWHKPNPMPESVKDRCTKSHEYIFLFS---KNKKYFYDNESIKEPAKDWGTRD 195

Query: 178 ------------VQMRSDWLIPICSGSER----LRNKDGEKLHPTQKPEALLSRILVSST 221
                       +Q  S       + ++R    + NK   + H    P  L+   +++ +
Sbjct: 196 RSKGKYHNEGTGLQPHSGLTKSYPTKNKRSVWSVTNKPYREAHFATYPPDLIEPCILAGS 255

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ-PLGNIELTVLT 280
           + GDI+LDPF GSGT+ AVAK L R +IG E+ + Y D+  +R++    P+  +    LT
Sbjct: 256 EKGDIVLDPFMGSGTTAAVAKSLGRDYIGCELHEKYGDLIRQRVSEYHVPIEEVSQNGLT 315


>gi|330822254|ref|YP_004362475.1| DNA methylase N-4/N-6 domain protein [Burkholderia gladioli BSR3]
 gi|327374091|gb|AEA65445.1| DNA methylase N-4/N-6 domain protein [Burkholderia gladioli BSR3]
          Length = 218

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 105/245 (42%), Gaps = 43/245 (17%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+ +  L +L  +SVD +  DPPY +       R   S+ +   D W   +  E Y 
Sbjct: 4   LYNGDCLVALPQLARESVDCVITDPPYLVNFRD---RSGRSIANDSNDEWLDPAFVEIY- 59

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
                      RVLK +        ++ + R     ++  F +   IV+ K+      + 
Sbjct: 60  -----------RVLKRDTVCVSFYGWNKVDRFFHAWKSAGFRVCGHIVFTKTYAS---KA 105

Query: 143 RRFQNAHET-LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
              +  HE+  + A   P             AA E+         PI  G  +     G 
Sbjct: 106 GLVKYQHESAYVLAKGRP-------------AAPEN---------PI--GDVQRFEYSGN 141

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HPT+KP + L  ++ S +KPGD ILDPF GSG++   A++L R +IGIE+ + Y   A
Sbjct: 142 KHHPTEKPVSALRTLISSFSKPGDTILDPFAGSGSTCVAARELGRRYIGIELDETYFAAA 201

Query: 262 TKRIA 266
             R++
Sbjct: 202 KTRLS 206


>gi|154499042|ref|ZP_02037420.1| hypothetical protein BACCAP_03034 [Bacteroides capillosus ATCC
           29799]
 gi|150271882|gb|EDM99108.1| hypothetical protein BACCAP_03034 [Bacteroides capillosus ATCC
           29799]
          Length = 342

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 127/337 (37%), Gaps = 93/337 (27%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD-A 67
           I +N+       D I  G+ + +++ LP  SV      PPY            ++L D  
Sbjct: 19  IQQNRRYTTIQLDIIHTGDCLEIMKTLPDDSVHCCVTSPPY------------YALRDYG 66

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV---------------IGSYHNIF 112
           +     + ++ + Y +         RRVL+P+GTLW+               I   +   
Sbjct: 67  MEAQIGRETTPKEYISRLTEVFTEVRRVLRPDGTLWLNISDTYAGKGNQGDFIDPKNPYG 126

Query: 113 RIGTM-------------------------LQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
           R G                           L++  +++ NDI+W K NPMP     R   
Sbjct: 127 RNGQAVALNNKVEGCKPKDMIGIPWMLAFALRDTGWYLRNDIIWMKDNPMPESVKDRLSR 186

Query: 148 AHETLIWASPSPKAKGYTFNYDA----------------LKAANEDVQMRSDWLIPICSG 191
            +E +   S   K++ Y F+Y A                +K  N+  +       P    
Sbjct: 187 CYEHIFLFS---KSRKYFFDYKAISEPIAPATAERLKRGMKGGNKYGKPVPGQPQPQSIN 243

Query: 192 SER------------LRNK-DGEKL--------HPTQKPEALLSRILVSSTKPGDIILDP 230
             R            LRNK D  K+        H    P  L+   L++    G I+LDP
Sbjct: 244 RPREHGEIKDADINPLRNKRDVWKINTVPFKGGHYAAYPPKLVETCLLAGCPEGGIVLDP 303

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           F GSGT+G VA ++ R F+GIE+   Y ++A KRI  
Sbjct: 304 FMGSGTTGMVASQMGRHFVGIELNPAYSELAYKRIGG 340


>gi|109947551|ref|YP_664779.1| hypothetical protein Hac_1016 [Helicobacter acinonychis str.
           Sheeba]
 gi|109714772|emb|CAJ99780.1| unnamed protein product [Helicobacter acinonychis str. Sheeba]
          Length = 374

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 122/284 (42%), Gaps = 52/284 (18%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N I  + ++I   +S+  L+KLP   +D++   PPYN  +N           +A  D+  
Sbjct: 116 NEIQSYLNQIYCADSLEFLKKLPNNCIDIVLTSPPYNFGIN----------YNATQDA-- 163

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWV---------IGSYHNIFRIGTMLQNLNFW 124
             + ++ Y     A    C RVLK  G + V         I ++H I +  + + +   W
Sbjct: 164 --NLWQEYFNTLFAIFTECIRVLKSGGRIIVNIQPMFSDYIPTHHFISK--SFIDSGLIW 219

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETL-IWASPSPKAKGYTFNYDALKAANE------- 176
              +I+W K+N         +   + T   W SP+     Y++ +  +   N        
Sbjct: 220 -KGEILWEKNN---------YNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNNLKKEGDK 269

Query: 177 -DVQMRSDWLIPICSGS-----ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
            ++ +  D       G      ER   + G   H    PE L+ R L   +   DIILDP
Sbjct: 270 NNIDITDDEFKKWVYGKWNFAPERNMKQYG---HDAMFPEELVKRCLKLFSYQNDIILDP 326

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
           F G+GT+  VAK+L R FIGI++ + Y ++A  R+     L N+
Sbjct: 327 FNGAGTTTKVAKQLGRRFIGIDISEKYCEVAKARLKEATDLFNV 370


>gi|260575307|ref|ZP_05843307.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sp. SW2]
 gi|259022567|gb|EEW25863.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sp. SW2]
          Length = 541

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 135/354 (38%), Gaps = 116/354 (32%)

Query: 26  GNSISVL-EKLPAKSVDLIFADPP------YNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           G+++ VL E +   SVDLI+ DPP      YN+   G       + ++A  D+W    S 
Sbjct: 8   GDNLKVLRESIRDASVDLIYLDPPFNSNASYNVLFKGPQGADSAAQIEAFDDTWHWNDSA 67

Query: 79  E-------------------------------AYDAFTRAWLLACRRVLKPNGTLWV--- 104
           E                               AY A     L+   RVLKP G+L++   
Sbjct: 68  EEAFGDVMRGGNVAASTMLRAMRSFLGDNDMMAYLAMMAVRLVELHRVLKPTGSLYLHCD 127

Query: 105 -IGSYHNIFRIGTMLQNLNFWILNDIVWR-------KSNPMPNFR--------------- 141
              S++    +  +  N N+   N+I+WR       KSN  P                  
Sbjct: 128 PTASHYLKVLLDAVFGNENY--RNEIIWRRTNAHNVKSNVFPRVHDTILFYSKSDKSTWA 185

Query: 142 -------------------GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
                              GR F     T+I  S   K +       + +A    ++ R 
Sbjct: 186 KQFIGYSPEQLKRYSVDEDGRLFTGQDLTMIGGSAERKKEWRGTIPSSGRAWGASLEQRE 245

Query: 183 DW----LI-------PICSGSE-------------------RLRNKDGEKL-HPTQKPEA 211
           +W    LI       P   G +                   R+ N   E+L +PTQKP A
Sbjct: 246 EWWAAGLILTKKDGTPRLDGRKVFLDEKPGKQADSLWTDILRVGNTADERLGYPTQKPVA 305

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           LL RIL +S+ PGD++LDPF G GT+   A+KL R +IGI++    + +  KR+
Sbjct: 306 LLERILNASSNPGDVVLDPFCGCGTTVHAAQKLGRQWIGIDVTHLAVGLIEKRL 359


>gi|22299421|ref|NP_682668.1| DNA-methyltransferase [Thermosynechococcus elongatus BP-1]
 gi|22295604|dbj|BAC09430.1| DNA-methyltransferase [Thermosynechococcus elongatus BP-1]
          Length = 292

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 118/279 (42%), Gaps = 57/279 (20%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G+   V+ ++P +++ LIF  PPYNL   G+ Y              +   + E Y    
Sbjct: 5   GDICEVVRQVPDEAMTLIFTSPPYNL---GKAY--------------ETPVAIEDYLQSQ 47

Query: 86  RAWLLACRRVLKPNGTL-WVIGSY---HNIFRIG----TMLQNLNFWILNDIVWRKSNPM 137
            A +    RVL+P G+L W +G++     ++ +      + + L   + N I+W+  + +
Sbjct: 48  SAVIAELYRVLRPEGSLCWQVGNFVQRGEVYPLDILFYPLFKRLGLKLRNRIIWKFGHGL 107

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR---------------- 181
                +RF   +ET++W +   K+  Y FN DA++   +    R                
Sbjct: 108 --HATKRFSGRYETILWFT---KSDEYIFNLDAVRIPAKYPGKRHFKGPNKGKPSGNPLG 162

Query: 182 -----------SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
                       DW   +        N   + LHP Q P  L+ R +++ +  GD + DP
Sbjct: 163 KNPSDVWEVVVQDWQELVWDIPNVKSNHPEKTLHPCQFPIELVERCVLALSHEGDWVFDP 222

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           + G G+S   A    R  +G E +  Y++IA +RI + +
Sbjct: 223 YMGVGSSLLAALMHNRRAMGCEKEPAYVNIARQRIQAYE 261


>gi|198276345|ref|ZP_03208876.1| hypothetical protein BACPLE_02540 [Bacteroides plebeius DSM 17135]
 gi|198270787|gb|EDY95057.1| hypothetical protein BACPLE_02540 [Bacteroides plebeius DSM 17135]
          Length = 270

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 119/268 (44%), Gaps = 48/268 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+I   + +  ++++   SVD I AD PY     G L R + S+      +WD+   F A
Sbjct: 5   DRIYLMDCMEGMKQIADGSVDAIIADLPY-----GVLNRSNPSV------NWDRQIPFAA 53

Query: 81  -YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            ++ +        +R+ KP+  + + G    +F    ML     W  N +VW+K     +
Sbjct: 54  LWEQY--------QRITKPDSPIILFG--QGLFSAWLMLSQPRLWRYN-LVWQKDRVTGH 102

Query: 140 FRGRRFQ-NAHETLI-----------WASPSP---------KAKGYTFN-YDALKAANED 177
              +R     HE ++             +P P         K +G+T   Y  +K +   
Sbjct: 103 LNAKRMPLRQHEDILVFYKKQPVYHPQMTPCPPERRYHGRRKTEGFTNRCYGTMKLSPVR 162

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           +   +D   P         +K G   HPTQKP AL+  ++ + T  GD++LD   GSGT+
Sbjct: 163 I---ADDKYPTSVIFMPKEHKKGAFYHPTQKPVALMEYLIRTYTDEGDVVLDNCIGSGTT 219

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRI 265
              A +  R +IG E++Q Y +IA +RI
Sbjct: 220 AVAAIRTGRHYIGFEIEQAYCEIAERRI 247


>gi|330907823|gb|EGH36348.1| adenine-specific methyltransferase [Escherichia coli AA86]
 gi|330907869|gb|EGH36392.1| adenine-specific methyltransferase [Escherichia coli AA86]
          Length = 227

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 104/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I G+ + V+   P  +VD I  DPPY   L G   R   ++    TD W + +  E +
Sbjct: 3   RFILGDCVRVMATFPGNAVDFILTDPPY---LVGFRDRSGRTIAGDKTDEWLQPACNEMH 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPALPQKPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|318057431|ref|ZP_07976154.1| DNA methylase [Streptomyces sp. SA3_actG]
 gi|318075992|ref|ZP_07983324.1| DNA methylase [Streptomyces sp. SA3_actF]
          Length = 252

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 100/256 (39%), Gaps = 39/256 (15%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE------ 79
           G+++++L  L    VD +  DPPYN        R   +  +       +   F+      
Sbjct: 10  GDALTLLPTL-INPVDAVICDPPYNSGGRTMTARTARTAREKYLTEGGRLHGFDLGTFTG 68

Query: 80  ------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                 AY ++    L  C R+ +P G   V   +  +      LQ   +      VW K
Sbjct: 69  DNRDQRAYTSWLSQILAHCYRLTRPGGAALVFTDWRQLAATTDALQAAGYTWRGIAVWLK 128

Query: 134 --SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
             + P P     R +   E ++W S      G    Y                 +P    
Sbjct: 129 PIARPQPG----RLKQDSEFIVWGSAGAMIPGTDPVY-----------------LPGHFT 167

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
             + R K   + H TQKP  ++ + LV    PG  +LDPF GSGT+GA A    RSFIGI
Sbjct: 168 GSQPRGK--ARQHITQKPLDVMQQ-LVRIAPPGGTVLDPFAGSGTTGAAALTEGRSFIGI 224

Query: 252 EMKQDYIDIATKRIAS 267
           E    Y ++A  R+AS
Sbjct: 225 EQSASYAEVARARLAS 240


>gi|332674142|gb|AEE70959.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori 83]
          Length = 112

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 45/62 (72%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPTQK   L+ +I+   T P DI+LDPF GSGT+G   K+L+R+FIGIE +++Y  IA K
Sbjct: 48  HPTQKSLTLMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLKRNFIGIESEKEYFQIAKK 107

Query: 264 RI 265
           R+
Sbjct: 108 RL 109


>gi|297380564|gb|ADI35451.1| type III restriction enzyme [Helicobacter pylori v225d]
          Length = 572

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 126/299 (42%), Gaps = 78/299 (26%)

Query: 23  IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF- 78
           +IKGN++  L  L    AK V  I+ DPPYN                   DS++   +F 
Sbjct: 170 LIKGNNLIALHSLKKKFAKQVKCIYIDPPYN----------------TGNDSFNYNDNFN 213

Query: 79  -EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL----NFWILNDIVWRK 133
             ++  F +  L   R  L  +G++++   Y+ +     ++  +    NF   ++I+WR 
Sbjct: 214 HSSWLVFMKNRLEVAREFLSDDGSIYINLDYNEVHYCKVLMDEIFKRENFR--SEIIWRM 271

Query: 134 SNPMPNFR--GRRFQNAHETLIWASPSPKA---KGYTFNYDALKAAN------------- 175
              +  ++   +++   H+T+++ S S      K Y  N D L+                
Sbjct: 272 G-FLSGYKTAAKKYIRNHDTILFYSKSDNYLFNKTYIENKDFLQLLTKNEVQNAFKKFSF 330

Query: 176 -----------------------EDVQMRSDW----LIPICSGSERLRNK---DGEKLHP 205
                                  ED    + W     I I S   R+      D E    
Sbjct: 331 PQEKVDDFLTFINHENRGEKYPLEDTWNSNKWDKLNSIAIDSSVSRVDETIAIDDENF-K 389

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            QKPEAL+SRIL  ST   D++LD F GSGT+ AVA K++R +IGIE + DYI+  TK 
Sbjct: 390 GQKPEALISRILEVSTNENDLVLDFFAGSGTTCAVAHKMKRRYIGIE-QMDYIETITKE 447


>gi|221215280|ref|ZP_03588245.1| DNA methylase [Burkholderia multivorans CGD1]
 gi|221164712|gb|EED97193.1| DNA methylase [Burkholderia multivorans CGD1]
          Length = 214

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 105/247 (42%), Gaps = 49/247 (19%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+ + VL  +P   VD +  DPPY +  +    R   S+ + V   W   +  E Y 
Sbjct: 4   LYNGDCLEVLPTIPDSVVDFVLTDPPYLVNYHD---RSGRSIANDVKSDWLAPAFAEVY- 59

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI---VWRKSNPMPN 139
                      RV+KPN                T+  +   W   D+    W+++     
Sbjct: 60  -----------RVMKPN----------------TLCVSFYGWTKTDLFFDAWKRA----- 87

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR-NK 198
             G R       +++A    K+      + A +  +  V  +    +P  +  + +R   
Sbjct: 88  --GLRIVG---HIVFA----KSYASKSRFVAYRHESAYVLAKGQPAVPDTALPDVMRWEY 138

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            G + HPTQKP   L R++ + T  GD++LDPF GSG++   A++L R +IGIE+   Y 
Sbjct: 139 SGNRHHPTQKPVPCLKRLIETYTAAGDVVLDPFAGSGSTCVAARELGRYYIGIELDPTYY 198

Query: 259 DIATKRI 265
             A +R+
Sbjct: 199 TAACERL 205


>gi|171316523|ref|ZP_02905740.1| DNA methylase N-4/N-6 domain protein [Burkholderia ambifaria MEX-5]
 gi|171098357|gb|EDT43162.1| DNA methylase N-4/N-6 domain protein [Burkholderia ambifaria MEX-5]
          Length = 249

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 111/261 (42%), Gaps = 36/261 (13%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR---PDHSLVDAVTDSWDKFSS 77
           +++ + +++SV+  +P   VDL+F DPPY+        R   P    +    D    +  
Sbjct: 11  NRVHQADALSVMRAMPDACVDLVFTDPPYSSGGTTSASRSQAPSSKYIGG--DVKTVYPE 68

Query: 78  FEAYDAFTRAWLLACR-------RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
           F+      R+W   C        RV +    L     +  +  +   +Q   F      V
Sbjct: 69  FQHDTKDQRSWTFWCMTWLAEAYRVCRNEAHLACFVDWRQLPSLTDAIQAAGFTWRGVAV 128

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W K++     R   F    E L+WA+     KG                 R+D  +P   
Sbjct: 129 WDKTSGRTRPRMGGFAQQTEFLVWAT-----KGAV--------------RRADVYLPGVF 169

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
            SERL +    K H T+KP A L+R +V     G ++LDPF GSGT  A AK+   ++IG
Sbjct: 170 -SERLSHP---KRHMTEKP-AQLAREVVRLAPAGGVVLDPFAGSGTFLAAAKEAGLNWIG 224

Query: 251 IEMKQDYIDIATKRIASVQPL 271
            E++  Y  +AT R+A +  L
Sbjct: 225 CELEPTYHQVATARLAELDAL 245


>gi|163846816|ref|YP_001634860.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222524637|ref|YP_002569108.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus sp.
           Y-400-fl]
 gi|163668105|gb|ABY34471.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222448516|gb|ACM52782.1| DNA methylase N-4/N-6 domain protein [Chloroflexus sp. Y-400-fl]
          Length = 329

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 127/281 (45%), Gaps = 61/281 (21%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I+ G+    + ++P +S+ LI   PPYNL   G+ Y       D V        S EAY 
Sbjct: 25  IMSGDVSECIAQIPDRSIALIVTSPPYNL---GKAYE------DRV--------SIEAYL 67

Query: 83  AFTRAWLLA--CRRVLKPNGTL-WVIGSY---HNIFRIGTM----LQNLNFWILNDIVWR 132
             T+A L+A  C RVL+ +G++ W +G++     ++ +  +     + L   + N IVW+
Sbjct: 68  Q-TQAELIAQLC-RVLRDDGSICWQVGNFVEHGEVYPLDILYYPIFKRLGLRLRNRIVWK 125

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE---------------- 176
             + +     +RF   +ET++W +   K+  Y FN DA++   +                
Sbjct: 126 FGHGL--HASKRFSGRYETILWFT---KSDHYIFNLDAVRVPAKYPGKRHFKGPNKGRPS 180

Query: 177 ---------DVQ--MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
                    DV   +  DW   +        N   + +HP Q P  L+ R +++ T  GD
Sbjct: 181 GNPLGKNPSDVWEILERDWEELVWDIPNVKSNHPEKTIHPCQFPIELVERCVLALTNEGD 240

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           ++ DP+ G G++   A   +R  +G + +  Y++IA +R+ 
Sbjct: 241 MVFDPYMGVGSTLIAALMHQRRAVGCDKEATYVEIARQRVV 281


>gi|166364160|ref|YP_001656433.1| site-specific DNA-methyltransferase [Microcystis aeruginosa
           NIES-843]
 gi|166086533|dbj|BAG01241.1| site-specific DNA-methyltransferase [Microcystis aeruginosa
           NIES-843]
          Length = 388

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 106/276 (38%), Gaps = 59/276 (21%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G+   +LE++PA+SVDLIF  PPY    N    RP++S          +F  +E Y    
Sbjct: 120 GDCSELLEEMPAESVDLIFTSPPY---FNA---RPEYS----------EFEEYETYLLKL 163

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFR----------------IGTMLQNLNFWILNDI 129
           R  +  C RVL   G  +VI     + R                +  +     +  ++DI
Sbjct: 164 RQVIRKCHRVLS-EGRFFVINISPVLLRRASRNQASKRIAVPFDLHRIFVEEGYDFIDDI 222

Query: 130 VWRKSNPM--PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI- 186
           +W K         RGRRF      L + +       Y   Y       +   +  DW I 
Sbjct: 223 IWLKPEGAGWATGRGRRFAADRNPLQYKTVP--VTEYVLVY------RKHTDLLIDWHIR 274

Query: 187 -----------PICSGSERLR----NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
                       I  G ER      N      HP   P  L  +++   +  GD++LDPF
Sbjct: 275 NHPDQEVVKASKIADGYERTNVWKINPVTNSKHPAAFPVELAEKVITYYSFKGDVVLDPF 334

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            GSGT G  A  L R F+  E   +YI++  K I  
Sbjct: 335 AGSGTVGLAAASLDRRFVLFESNFNYIELIRKLITE 370


>gi|238801657|ref|YP_002922713.1| gp41 [Burkholderia phage BcepIL02]
 gi|237688032|gb|ACR15034.1| gp41 [Burkholderia phage BcepIL02]
          Length = 310

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 119/272 (43%), Gaps = 57/272 (20%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           ++++ +  L + S+ L+   PPYN                 +   ++K S  +AY     
Sbjct: 21  DNLAFMRPLKSGSMQLVVTSPPYN-----------------IGKKYEKRSPLDAYVQAQA 63

Query: 87  AWLLACRRVLKPNGTL-WVIGSY---HNIFRIGTML----QNLNFWILNDIVWRKSNPMP 138
             +  C R+L P G+L W +G++     IF + T+L    +     + N +VW   + + 
Sbjct: 64  QVISECVRLLSPRGSLCWQVGNHVQKGEIFPLDTVLYPVFREHGLKLRNRVVWHFEHGL- 122

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV-----------QMRSD---- 183
                R    +ET++W +   K   Y FN D ++  ++             Q+  +    
Sbjct: 123 -HCSNRLSGRYETILWFT---KGDDYVFNLDPIRVPSKYPGKKYFKGPKAGQLSCNPLGK 178

Query: 184 -----WLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                W+ P       ++N   EK  HP Q P  L+ R+++S T PGD + DP+ G G+S
Sbjct: 179 NPGDVWVFP------NVKNNHVEKTDHPCQFPVELVERLVLSLTNPGDAVFDPYMGVGSS 232

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
              A K  R   G ++ ++Y++ A +R+  ++
Sbjct: 233 VVAALKNDRVGYGCDVVKEYVEAAWERVHQLR 264


>gi|257440814|ref|ZP_05616569.1| DNA (cytosine-5-)-methyltransferase [Faecalibacterium prausnitzii
           A2-165]
 gi|257196788|gb|EEU95072.1| DNA (cytosine-5-)-methyltransferase [Faecalibacterium prausnitzii
           A2-165]
          Length = 184

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 47/67 (70%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +HPT+KP  LL+ ++ S TKPGD+ILDPF GSG++   AKK  R FIGIE+  DY   A 
Sbjct: 117 VHPTEKPVGLLANLISSVTKPGDLILDPFAGSGSTLVAAKKTGRRFIGIELDDDYFVTAQ 176

Query: 263 KRIASVQ 269
           +RI  V+
Sbjct: 177 RRIEEVR 183


>gi|116006850|ref|YP_788033.1| putative methylase [Escherichia coli]
 gi|115500705|dbj|BAF33936.1| putative DNA modification methylase [Escherichia coli]
          Length = 227

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 103/258 (39%), Gaps = 61/258 (23%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPY---LVGFRDRSGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                       RVLK +  +     +H I R     ++  F +   +V           
Sbjct: 60  ------------RVLKKDALMVSFYGWHRIDRFMAAWKHAGFSVAGHLV----------- 96

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS-ERLRNK-- 198
                                 +T NY +  A    V  R +    +  GS  R RN   
Sbjct: 97  ----------------------FTKNYTSKSAY---VAYRHECAYILAKGSPARPRNPLP 131

Query: 199 -------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
                   G + HPT+K    L  ++ S T P  I+LDPF GSG++   A +  R +IGI
Sbjct: 132 DVLGWKYSGNRHHPTEKSVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGI 191

Query: 252 EMKQDYIDIATKRIASVQ 269
           E+ + Y     +R+A+VQ
Sbjct: 192 ELLEQYHRAGQQRLAAVQ 209


>gi|269123833|ref|YP_003306410.1| DNA methylase N-4/N-6 domain-containing protein [Streptobacillus
           moniliformis DSM 12112]
 gi|268315159|gb|ACZ01533.1| DNA methylase N-4/N-6 domain protein [Streptobacillus moniliformis
           DSM 12112]
          Length = 391

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 117/273 (42%), Gaps = 55/273 (20%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           +  +  +++DLI+ DPP+  Q   +L +    +     D W   +  E Y  + R  L+ 
Sbjct: 15  MRNMYDETIDLIYLDPPFFTQRKHKL-KSKEGIEYEFNDIW---NDIEEYKEYLRIRLVE 70

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNL----NFWILNDIVWRKSNPMPNFRGRRFQN 147
            +RVLK +G ++V    +    I  +L+ +    NF  +++I+W       + +G    +
Sbjct: 71  MKRVLKNDGNIFVHCDNNASHIIRLLLEEIFGVSNF--VSEIIWTYKRWSNSKKG--LLD 126

Query: 148 AHETLIWASPSPKAKGYTFNY----------------DALKAANEDVQMRSD-------- 183
           +H+ +   S   K+K Y FN                 D ++  N     + D        
Sbjct: 127 SHQNIYHFS---KSKEYKFNIIYTDYSPTTNVDQILQDRIRDGNGKSIYKRDENGKVVYN 183

Query: 184 -----------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
                      W IP  +   + R       +PTQKP  LL  IL  ++  GDI+LDPF 
Sbjct: 184 RIKKGVPLGDVWEIPFLNPKAKERVG-----YPTQKPIQLLENILKIASNEGDIVLDPFL 238

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           GSGT    +K L R +IG ++  + I IA  R+
Sbjct: 239 GSGTCAVASKLLNRRYIGFDINPNAISIAKYRL 271


>gi|321271701|gb|ADW79788.1| putative DNA methyltransferase [Escherichia coli]
          Length = 227

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 104/261 (39%), Gaps = 67/261 (25%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY   L G   R   ++    TD W         
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPY---LVGFRDRSGRTIAGDKTDEW--------- 50

Query: 82  DAFTRAWLLACR---RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
                  L AC    RVLK +  +     ++ + R     +N  F ++  +V        
Sbjct: 51  ------LLPACNEMFRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLV-------- 96

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
                                    +T NY + KAA   V  R +    +  G  RL  K
Sbjct: 97  -------------------------FTKNYTS-KAAY--VGYRHECAYILAKGRPRLPQK 128

Query: 199 ----------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
                      G   HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +
Sbjct: 129 PLPDVLGWKYSGNHHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRY 188

Query: 249 IGIEMKQDYIDIATKRIASVQ 269
           IGIE+ + Y     +R+A+VQ
Sbjct: 189 IGIELLEQYHRAGQQRLAAVQ 209


>gi|317059623|ref|ZP_07924108.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
           3_1_5R]
 gi|317060406|ref|ZP_07924891.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
           D12]
 gi|313685299|gb|EFS22134.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
           3_1_5R]
 gi|313686082|gb|EFS22917.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
           D12]
          Length = 311

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 122/305 (40%), Gaps = 66/305 (21%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF--EAY 81
           + G+    L+ +  +S+D I   PPY  QL          + +++ +  DK  +   E Y
Sbjct: 1   MHGDCSEYLKTIKTESIDCIVTSPPY-WQLRDYGVSNQIGMEESIEEYIDKLMNIMNELY 59

Query: 82  DAFTRAWLLACR---------------RVLKPNGTLWVIGSY----HNIFRIGTML--QN 120
               ++                       +K N   W+ G+      NI R   M+  + 
Sbjct: 60  RVLKKSGTFFLNLGDTYSNVNSKFYPANKMKDNKFSWIEGTVVSRKTNILRKSKMMIPER 119

Query: 121 LNF------WIL-NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
           L+       WIL N+I+W K N +P     RF N  E + + + S K   Y F       
Sbjct: 120 LSIRMIDSGWILRNEIIWHKPNALPESLTDRFTNDFEKIFFFTKSQK---YYFQKQYEPY 176

Query: 174 ANEDVQMRSDWLIP------ICSGSERL------------RNKDGEKL------------ 203
           + + +    D ++P      + +G  ++             N+ G  +            
Sbjct: 177 SEKTLHSFKDGIMPTGKKKMLSAGESKMAMKKIDKPWRAVYNEKGRNMRTVWSIANKGLR 236

Query: 204 --HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             H    PE L+ R L+S      I+LDPF GSGT+  VAK L  + IGIE+K++YIDIA
Sbjct: 237 EGHYASFPEKLVERCLLSGCPQNGIVLDPFLGSGTTLKVAKNLNLNGIGIELKKEYIDIA 296

Query: 262 TKRIA 266
             RI 
Sbjct: 297 VHRIG 301


>gi|331647347|ref|ZP_08348440.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M605]
 gi|331043753|gb|EGI15890.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M605]
          Length = 227

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 105/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+  +P  ++D I  DPPY   L G   R   ++   V D W + +S E Y
Sbjct: 3   RFVLGNCIDVMATIPDNAIDFILTDPPY---LVGFRDRSGRTIAGDVNDDWLQPASNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  L     ++ I       +   F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALLVSFYGWNRIDLFMAAWKRAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAAFQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|237742462|ref|ZP_04572943.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
           4_1_13]
 gi|229430110|gb|EEO40322.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
           4_1_13]
          Length = 312

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 126/315 (40%), Gaps = 86/315 (27%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           KII G+    L+KL  +S+D I   PPY    + +  GQ+      L + V +  +K  +
Sbjct: 2   KIIHGDCFENLKKLETESIDCIVTSPPYWQLRDYETPGQI-----GLEENVEEYLEKLMN 56

Query: 78  F--EAY--------------DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
              E Y              D ++       RR+ K  G         NIF+  T   ++
Sbjct: 57  IMNELYRILKKSGTFFLNMGDTYSNVNSKFSRRINKKRGK-------ENIFKTITRKTDV 109

Query: 122 NF------------------WIL-NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
                               WIL N+I+W K N +P     RF N  E + + + + K  
Sbjct: 110 KRKSKLMIPERLCIKMIDAGWILRNEIIWHKPNVLPEAVSDRFTNDFEKIFFFTKNQK-- 167

Query: 163 GYTFNYDALKAANEDVQMRSDWLIP------ICSG-----------------SERLRN-- 197
            Y F       + + +    D +IP      + SG                 SE+ RN  
Sbjct: 168 -YYFKKQYEPYSEKILSAFKDGIIPTGRKKLLESGESKMTMKKINKPWKAEYSEKGRNMR 226

Query: 198 -------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
                  K   + H    PE L++R L+S       +LDPF GSGT+  VAKKL  + IG
Sbjct: 227 SVWSVATKGIREGHYASFPEKLVTRCLISGCPENGTVLDPFLGSGTTLVVAKKLGINGIG 286

Query: 251 IEMKQDYIDIATKRI 265
           IE+K++YI IA  RI
Sbjct: 287 IELKKEYIAIAINRI 301


>gi|38564764|gb|AAR23811.1| NheIM [Neisseria mucosa subsp. heidelbergiensis]
          Length = 293

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 123/286 (43%), Gaps = 45/286 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS-FEAY 81
           II  +++S L+KL   S+ L    PPY    N      +     ++ +  +K    FE  
Sbjct: 6   IINDDAVSGLKKLEDSSIQLTITSPPYYNLRNYACGESEIGKESSINEYINKLQDVFEIL 65

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNI-FRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
              T++  L    +    G  ++ G    I +R+   L+ L + + +DI+W K N MP+ 
Sbjct: 66  FKKTKSDGLLFLNL----GDSYINGELAGIPWRVALSLKELGWILRSDIIWHKPNAMPSS 121

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN----EDVQMRSDWL-------IPIC 189
              R    HE +   +   K+K Y +N D+++  +    E  +MR            P  
Sbjct: 122 VKNRPTVDHEYIFMFA---KSKQYKYNQDSIREPHVTFSELSKMRGGRSHFGKREGTPEK 178

Query: 190 SGSERLRN-KDG---EKLHPTQK---------------------PEALLSRILVSSTKPG 224
             +E  +N  DG   +  HP  +                     PE L+   + + + P 
Sbjct: 179 GKNEGNKNLHDGRWDQAFHPQGRNKRTVWSISLGKFRGTHFAVFPEKLVEVCVKAGSDPN 238

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
           D+I DPF GS T+G VA +L R FIGIE+ ++Y  +A  R+ S  P
Sbjct: 239 DLICDPFSGSATTGVVAIRLNRRFIGIELSENYCQLAEDRLKSEVP 284


>gi|156742487|ref|YP_001432616.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156233815|gb|ABU58598.1| DNA methylase N-4/N-6 domain protein [Roseiflexus castenholzii DSM
           13941]
          Length = 464

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 121/273 (44%), Gaps = 60/273 (21%)

Query: 38  KSVDLIFADPPYNLQLNG----QLYRPDHS-LVDAV----TDSWDKFSSFEAYDAFTRAW 88
           + ++LI+ DPP+   ++     +L  P  + L+ A      D+WD     +AY  F    
Sbjct: 78  RRINLIYIDPPFGSGIDRARRVRLRGPGPARLIPAAEVEYCDTWDD----DAYLQFMYER 133

Query: 89  LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMPNFRGRRFQ 146
           L+A R +L  +G +++   +     +  ++  +     +LN+I+W    P      R+F 
Sbjct: 134 LIALRDLLADDGCIYLHCDFRKAHHLRCLMDEVFGAERMLNEIIW--FYPRGGDGERQFN 191

Query: 147 NAHETLIWASPSPKAKGYTFNYDAL----------KAANEDVQMR--------------- 181
             H+T++  +   +   +TFNYDA+          +   ED + R               
Sbjct: 192 RKHDTILLYA---RGDRWTFNYDAVLIPYTRRQIARFRQEDERGRYYWNVNPRGERVKTY 248

Query: 182 ---------SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
                      W IPI +   R      +  +PT KP ALL RI+ +S++PGD++LD F 
Sbjct: 249 LRKPGIGAYDVWTIPIDAALVR------DLGYPTAKPLALLERIIRASSRPGDLVLDCFA 302

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           GSGT+   A+ L R +I  +     I +  +R+
Sbjct: 303 GSGTTAVAAQHLERRWIACDANPGAIQVTARRL 335


>gi|120609261|ref|YP_968939.1| DNA methylase N-4/N-6 domain-containing protein [Acidovorax
           citrulli AAC00-1]
 gi|120587725|gb|ABM31165.1| DNA methylase N-4/N-6 domain protein [Acidovorax citrulli AAC00-1]
          Length = 323

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 77/169 (45%), Gaps = 30/169 (17%)

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK--AAN 175
           L+   +++  +++W K NPMP     R   AHE++   S   K   Y F+  A+    A 
Sbjct: 153 LRRDGWYLRQEVIWHKPNPMPESVTDRCTRAHESVFLLS---KRARYYFDVQAIAEPVAP 209

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKL-------------------------HPTQKPE 210
             V   S   +   SGS R++ K    +                         H    P 
Sbjct: 210 STVLRLSQPRLAQQSGSTRVQGKTNGNMPTVGCLDMRRRRSVWTIATRANRGPHNATYPA 269

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           AL+   +++ ++ GD++LDPF GSGT+G  A +LRR F+G E+ + YID
Sbjct: 270 ALIGPCILAGSRAGDVVLDPFMGSGTTGTTALRLRRHFVGCELVRSYID 318


>gi|308123713|gb|ADO14694.1| M.OkrAI [Oceanobacter kriegii]
          Length = 407

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 126/286 (44%), Gaps = 42/286 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+ +G+  S+L+ + + SVDLIF+DPP+NL    ++Y  D           D     + Y
Sbjct: 114 KLYRGDCYSLLKSMESDSVDLIFSDPPFNLD---KIYPSDM----------DDNIKVDKY 160

Query: 82  DAFTRAWLLACRRVLKPNGTLWV---------IGSYHN---IFR--IGTMLQNLNFWILN 127
             +++ W+  C RVLKP G L++         +GS+ +    FR  IG  ++  +  I N
Sbjct: 161 IGWSQEWIKECARVLKPGGALFMWNLPKWNVALGSFVDGLLTFRNWIGVDIK-YSLPIRN 219

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE--DVQMRSDWL 185
            +     + M   +G +  + H   +     PK  G   +Y   K       + +   W 
Sbjct: 220 RLYPSHYSLMYYIKGEKPNSFHPDRLAMDVCPKCYGDLKDYGGYKDKMNPLGINLSDVWY 279

Query: 186 -IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
            IP    ++  R K   +L        LL RI+  ++  GD++ DPF GSGT+   A+  
Sbjct: 280 DIPPVRHAKYKRRKGSNELSLK-----LLDRIIEMASDEGDLVFDPFGGSGTTYMAAELK 334

Query: 245 RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAF 290
            R ++G E+     DI  +R + ++     E  +L G R      F
Sbjct: 335 GRRWVGCELGP--TDIIKERFSLIEE----ERDILNGYRGRVNALF 374


>gi|109946717|ref|YP_663945.1| adenine specific DNA methyltransferase fragment 3 [Helicobacter
           acinonychis str. Sheeba]
 gi|109713938|emb|CAJ98946.1| adenine specific DNA methyltransferase fragment 3 [Helicobacter
           acinonychis str. Sheeba]
          Length = 71

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/63 (50%), Positives = 45/63 (71%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPTQK  AL+ +I+   T P D++LDPF GSGT+G   K L+R+FIG E++++Y  IA K
Sbjct: 9   HPTQKSLALMEKIISIHTNPNDLVLDPFMGSGTTGLTCKNLKRNFIGTELEKEYFQIAKK 68

Query: 264 RIA 266
           R+ 
Sbjct: 69  RLG 71


>gi|315453690|ref|YP_004073960.1| Modification methylase BamHII [Helicobacter felis ATCC 49179]
 gi|315132742|emb|CBY83370.1| Modification methylase BamHII [Helicobacter felis ATCC 49179]
          Length = 266

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 121/278 (43%), Gaps = 62/278 (22%)

Query: 21  DKIIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +++   ++++ L+  +P+  VD++   PPY+          D    +  T  ++K     
Sbjct: 7   NRLYASDAVAFLKSHVPSGGVDMVLTSPPYD----------DLRHYNGYTFEFEK----- 51

Query: 80  AYDAFTRAWLLACR--RVLKPNGT-LWVIGSY-------HNIFRIGTMLQNLNFWILNDI 129
                     +AC   RVLK  G  +WV+G            FR     Q + F + + +
Sbjct: 52  ----------MACEIFRVLKKGGVAVWVVGDKIKNGNKSLTSFRHALYFQEIGFNVHDVM 101

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM-----RSD- 183
           ++ K N  P  R   + N++E +   S   K K  TFN      A   V+M     ++D 
Sbjct: 102 IYAKKN-TPFMRSNAYTNSYEYMFVFS---KGKPKTFNPLKEATARHGVEMLVANKKADG 157

Query: 184 --WLIPICSGSERLRNK-------------DGEKL-HPTQKPEALLSRILVSSTKPGDII 227
               +P     E+ R               D E   HP   PE L    ++S +  GD++
Sbjct: 158 KNHKVPRELKKEKTRTNIWYYAVGLGGTTNDKEAFKHPATYPEQLAQDHILSWSNEGDLV 217

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           LDP  GSGT+  +A   RR+FIGI++ Q+YID+A +R+
Sbjct: 218 LDPMCGSGTTCKMAFLNRRNFIGIDISQEYIDLAQQRL 255


>gi|85715342|ref|ZP_01046324.1| hypothetical protein NB311A_12479 [Nitrobacter sp. Nb-311A]
 gi|85697763|gb|EAQ35638.1| hypothetical protein NB311A_12479 [Nitrobacter sp. Nb-311A]
          Length = 210

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 102/251 (40%), Gaps = 47/251 (18%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL---NGQLYRPDHSLVDAVTDSWDKFS 76
           +  I+ G+ I  +  L   SVD +  DPPY ++    +GQ    D+ L      +W    
Sbjct: 3   QPTILHGDCIQTMRGLAGASVDFVLTDPPYGVRYRSRDGQTIANDNHL------TW---- 52

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
               Y AF   +     RV+ P    +    ++   +  T+ + L F ++  +V+ K   
Sbjct: 53  ---LYPAFAEVY-----RVMMPGSLCFSFYGWNAADQFLTVWKALGFRVVGHVVFAK--- 101

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
              +   R   AH            +GY             +     W            
Sbjct: 102 --RYAASRLFLAHR---------HEQGYLLAKGNPVLPQNPLPDVLPW------------ 138

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
              G +LHPTQKP   L R++ +  KPG I+LDPF GSG++   AK   R FIGIE+ + 
Sbjct: 139 AYTGNRLHPTQKPVKPLQRLIETFCKPGGIVLDPFCGSGSTLLAAKLSGRPFIGIEIDRQ 198

Query: 257 YIDIATKRIAS 267
           +   A KR+ +
Sbjct: 199 HHATALKRLTA 209


>gi|122879126|ref|YP_200356.6| site-specific DNA-methyltransferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 233

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 104/247 (42%), Gaps = 35/247 (14%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRP------DHSLVDAVTD 70
           K+++++G+++++L  L A S D +  DPPY    L    +   P      D    D V D
Sbjct: 2   KNQLLQGDALTILPTLEANSFDALITDPPYASGGLTAAARARPPSTKYCRDGGHADFVGD 61

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
             D+      + A+ + WL  C R+LK    + +   +  +      LQ   F      V
Sbjct: 62  ERDQ----RGHLAWMQLWLSECARLLKEGAPVLLFTDWRQLPLTTDALQAAGFKWRGVAV 117

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W K+  +    GR F+N  E ++W S     KG                M  D   P+  
Sbjct: 118 WDKTEGVRPQLGR-FRNQAEYIVWGS-----KG---------------GMPLDRRAPVLP 156

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           G  R      +K H T KP  L+ R LV   + G  ILDPF GSGT+   A+     + G
Sbjct: 157 GVVRTPVLKADKHHLTGKPTELM-RSLVRICEAGGRILDPFAGSGTTLVAAELEGYRWTG 215

Query: 251 IEMKQDY 257
           +EM Q Y
Sbjct: 216 VEMTQHY 222


>gi|323964339|gb|EGB59821.1| DNA methylase [Escherichia coli M863]
          Length = 227

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 103/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I G+ + V+   P   VD I  DPPY   L G   R   +L    TD W + +  E Y
Sbjct: 3   RFILGDCVRVMATFPDNVVDFIITDPPY---LVGFCDRSGRTLAGDRTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ I R     +   F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRIDRFMAAWKRAGFSVVGHLVFTKNYTSKSAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
              R + A+        +   P P  +G+ ++                            
Sbjct: 108 VAYRHECAYILAKGRPALPQKPLPDVQGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP + L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVSSLQPLIESFTHPNAIVLDPFAGSGSTCVAALRSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|163850239|ref|YP_001638282.1| DNA methylase N-4/N-6 domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|163661844|gb|ABY29211.1| DNA methylase N-4/N-6 domain protein [Methylobacterium extorquens
           PA1]
          Length = 488

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 20/235 (8%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           L  +SV ++F+DPPYN+ ++G +       +  V       +S E  +A   A+L+    
Sbjct: 211 LQGESVRMVFSDPPYNVPVSGHVCG-----LGKVQHREFAMASGEMSEAEFVAFLVQAMA 265

Query: 95  VLK----PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP-MPNFRGRRFQNAH 149
            L+    P G +++   + ++F + T  + +    LN  VW K+N  M +F    +++ H
Sbjct: 266 HLRERQVPGGLMYLAMDHRHVFELSTAARQIGLEQLNICVWNKTNAGMGSF----YRSKH 321

Query: 150 ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
           E LI+    P A     + + ++         + W     +   R R ++    HPT KP
Sbjct: 322 E-LIFVLRKPGAA----HLNTVELGRHGRYRTNVWDYAGVNTFGRHRMQELSS-HPTVKP 375

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            AL+   +   T+ G+ +LD F GSGT+   A++  R   GIE+   Y+D+A +R
Sbjct: 376 VALVVDAIKDCTRRGERVLDAFCGSGTTLIAAERAGRVGYGIELDPVYVDVAVRR 430


>gi|290559357|gb|EFD92690.1| Site-specific DNA-methyltransferase [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 316

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 107/232 (46%), Gaps = 32/232 (13%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +K+  G+++ V+  LP++S+DLI+ DPP+    N  +   D + V    D WD       
Sbjct: 91  NKLYWGDNLHVMRTLPSESIDLIYIDPPFFSGRNYNMIFQDKNEVLTFEDIWD--GGLPT 148

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--ILNDIVWRKSNPMP 138
           Y  +  A L+  +R+LKP G+++V   +H    +   +  +  +    N+I+W  S    
Sbjct: 149 YQIWLNARLVEMKRLLKPTGSIYVHLDWHASHYMKVEMDKIFGYDKFRNEIIW--SYQRW 206

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDA--------LKAANEDVQMRSDWLIPICS 190
                +FQ  H+ +++   + +  GYTFN            KA    +  R   +I    
Sbjct: 207 TGATDKFQRMHDVILFY--TKETDGYTFNIQTEPYSEKSLHKARRTSIAERGK-VISQSY 263

Query: 191 GSERLRNKD--------------GEKL-HPTQKPEALLSRILVSSTKPGDII 227
             +R R K                E+L +PTQKPEALL RI+ +S+  GD++
Sbjct: 264 TDDRSRQKSMRDVWDISYINSQAKERLGYPTQKPEALLERIIKASSNKGDVV 315


>gi|83645282|ref|YP_433717.1| BamHI-like site-specific methyltransferase [Hahella chejuensis KCTC
           2396]
 gi|83633325|gb|ABC29292.1| BamHI-like site-specific methyltransferase [Hahella chejuensis KCTC
           2396]
          Length = 396

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 123/267 (46%), Gaps = 42/267 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+ +G+ I  L+ +   S+DL+FADPP+NL    +LY    S +D      D+  + E Y
Sbjct: 113 KLYRGDCIRFLKSIDNDSIDLVFADPPFNLS---KLY---PSEID------DRLKT-ENY 159

Query: 82  DAFTRAWLLACRRVLKPNGTL--WVIGSYHNIFR--IGTMLQNLNFWILNDIVWRKSNPM 137
             + + WL  C RV+KP G L  W +  +++     I + L   N WI  DI +  S P+
Sbjct: 160 LHWCQEWLFECARVIKPGGALFLWNLPKWNSSLSSYIESFLTFRN-WIGVDIKY--SLPI 216

Query: 138 PN------------FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE--DVQMRSD 183
            N             +G R    +   +     PK  G   +Y   K       V M   
Sbjct: 217 SNRLYPSHYSLLYFIKGERPNTFNPDRLPMQVCPKCYGDLKDYGGYKDKMNPAGVNMSDI 276

Query: 184 WL-IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           WL IP    + + + +DG      +    LL RI+  +TK GD++LDPF G+GT+   A+
Sbjct: 277 WLDIPPVRHA-KYKRRDGS----NELSLKLLDRIIQMATKEGDVVLDPFGGAGTTYMAAE 331

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQ 269
              R ++G E+    ID+  +R   ++
Sbjct: 332 LKGRRWLGCEIGP--IDVIVERFNLIE 356


>gi|269119459|ref|YP_003307636.1| DNA methylase N-4/N-6 domain protein [Sebaldella termitidis ATCC
           33386]
 gi|268613337|gb|ACZ07705.1| DNA methylase N-4/N-6 domain protein [Sebaldella termitidis ATCC
           33386]
          Length = 302

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 120/309 (38%), Gaps = 88/309 (28%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+  GN++S+++K+   S+  I   PPY   L    Y     L D V D   K       
Sbjct: 2   KLYHGNAVSLIDKIKDNSIQSIITSPPY-FCLRDYEYPQQIGLEDQVEDYLTKL------ 54

Query: 82  DAFTRAWLLACRRVLKPNGTLWV--IGSY-------------------------HNIFRI 114
               + W  A +  LK +G L++    +Y                         HN +R 
Sbjct: 55  ---IQIWNTA-KNKLKDDGLLFINIDDTYYYPRPGETKIWGMNANGDKRPGIKKHNEYRK 110

Query: 115 GTML---QNL------NFWIL-NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
            +++   Q L      + WI    I+W+K N MP     RF   +E +   S   K++ Y
Sbjct: 111 SSLMAVPQKLIIKMIESGWIFRQQIIWQKPNCMPESTTSRFTRDYEAIFMFS---KSENY 167

Query: 165 TFNYDALKAANEDV---------------------------QMRSDWLIP-ICSGSERLR 196
            FN        ED+                            MRS W I  +CS +    
Sbjct: 168 KFNQLKEDMKTEDLSNPRGSNGTTKQSGRRNEENKKTEYTRNMRSVWSINNVCSSNNN-- 225

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                  H    P  L  R+++ ST   D +LDPF GSGT+  VAK+L R  IGIE+   
Sbjct: 226 -------HYATFPAELARRLILCSTDEKDTVLDPFSGSGTTLKVAKQLNRHGIGIEINSK 278

Query: 257 YIDIATKRI 265
           Y+++A K I
Sbjct: 279 YVELAEKNI 287


>gi|331668083|ref|ZP_08368935.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA271]
 gi|331064597|gb|EGI36504.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA271]
          Length = 227

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 106/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVIARIPDNAIDFILTDPPY---LVGFRDRSGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFVAAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+++ Q
Sbjct: 196 QYHRAGQQRLSAEQ 209


>gi|5730144|emb|CAB52546.1| methyltransferase [Bacillus sp.]
          Length = 388

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 120/283 (42%), Gaps = 57/283 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++   + I  +  +   ++DLIFADPP+NL         D      + D   K S  E Y
Sbjct: 110 RLFNADCIQTMRNMNDNTIDLIFADPPFNL---------DKKYESGMND---KISKTE-Y 156

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYH-NIFRIGTMLQNLNF--WILNDIVWRKSNPMP 138
             +T  W+  C R+LKP G L++      N +    + +NLN   WI  D+ +  S P+ 
Sbjct: 157 LNWTEEWVTECVRILKPGGALFIWNLPQWNTYTAEILNRNLNLRHWIAADVKY--SLPIA 214

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL--------------------KAANEDV 178
           N    +   AH  L++     K    TFN + L                    K   E +
Sbjct: 215 N----KLYPAHYALLYYVKGDKPN--TFNREGLPLEICRHCAGDIKDYGGYKNKLNIEGM 268

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
            +   W        ++ +N+D  +L     P  LL RI+   +  GD+I DPF GSGT+ 
Sbjct: 269 SLTDIWHDISPVRHKKYKNRDSNEL-----PLNLLERIISMCSIEGDLIFDPFGGSGTTY 323

Query: 239 AVAKKLRRSF--------IGIEMKQDYIDIATKRIASVQPLGN 273
            V++ L R +        IGIE + + I+ A  +I  +Q   N
Sbjct: 324 IVSEILNRHWIGTEIGPIIGIEERFNQIEFAKLKINDIQSKKN 366


>gi|256026877|ref|ZP_05440711.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
           D11]
 gi|289764870|ref|ZP_06524248.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
           D11]
 gi|289716425|gb|EFD80437.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
           D11]
          Length = 321

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 130/305 (42%), Gaps = 62/305 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHS---------LVDAV 68
           KII G+S+ +L+ L  +S+D I   PPY    +  ++GQ+   ++          ++D +
Sbjct: 2   KIINGDSLKILKTLDTESIDCIITSPPYWQLRDYNISGQIGLEENIEEYIEKLMLIMDEL 61

Query: 69  TDSWDKFSSF--EAYDAFTRAWLLACRRVLKPNGT---LWVIGSYHNIFRIGTML--QNL 121
                K  +F     D ++       +R  K  G      VI    NI R   M+  + L
Sbjct: 62  YRVLKKSGTFFLNIGDTYSNVNSKFSKRSNKKRGKENIFKVIPRKTNIQRKSKMMIPERL 121

Query: 122 NF------WIL-NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
                   WIL N+I+W K N +P     RF N  E + + + + K   Y F       +
Sbjct: 122 CIKMIDQGWILRNEIIWHKPNVLPESLNDRFTNDFEKIFFFTKNQK---YYFKKQYEPYS 178

Query: 175 NEDVQMRSDWLIP------ICSGSER------------LRNKDGEKL------------- 203
            + +    D ++P      + +G  +            + N++G  +             
Sbjct: 179 EKTLNGFKDGVMPTGKKKMLEAGESKTAMKRIDKPWKTIYNENGRNMRTVWSIATKGIKE 238

Query: 204 -HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            H    PE L+ R L++      I+LDPF GSGT+  VAK L  + +G+E+K++YI++A 
Sbjct: 239 GHYASFPEELVKRCLLAGCPIDGIVLDPFLGSGTTLKVAKSLNLNGVGVELKKEYIEMAV 298

Query: 263 KRIAS 267
            RI  
Sbjct: 299 SRIGE 303


>gi|188528172|ref|YP_001910859.1| putative type III restriction enzyme M protein [Helicobacter pylori
           Shi470]
 gi|188144412|gb|ACD48829.1| putative type III restriction enzyme M protein [Helicobacter pylori
           Shi470]
          Length = 572

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 125/297 (42%), Gaps = 74/297 (24%)

Query: 23  IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF- 78
           +IKGN++  L  L    AK V  I+ DPPYN                   DS++   +F 
Sbjct: 170 LIKGNNLIALHSLKKKFAKQVKCIYIDPPYN----------------TGNDSFNYNDNFN 213

Query: 79  -EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSN 135
             ++  F +  L   R  L  +G++++   Y+ +     ++  +     + ++I+WR   
Sbjct: 214 HSSWLVFMKNRLEVAREFLSDDGSIYINLDYNEVHYCKVLMDEIFKRENLRSEIIWRMG- 272

Query: 136 PMPNFR--GRRFQNAHETLIWASPSPKA---KGYTFNYDALKAAN--------------- 175
            +  ++   +++   H+T+++ S S      K Y  N D L+                  
Sbjct: 273 FLSGYKTAAKKYIRNHDTILFYSKSDNYLFNKTYIENKDFLQLLTKNEVQNAFKKFSFPQ 332

Query: 176 ---------------------EDVQMRSDW----LIPICSGSERLRNK---DGEKLHPTQ 207
                                ED    + W     I I S   R+      D E     Q
Sbjct: 333 EKVDDFLTFINHENRGEKYPLEDTWNSNKWDKLNSIAIDSSVSRVDETIAIDDENF-KGQ 391

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           KPEAL+SRIL  ST   D++LD F GSGT+ AVA K++R +IGIE + DYI+  TK 
Sbjct: 392 KPEALISRILEVSTNENDLVLDFFAGSGTTCAVAHKMKRRYIGIE-QMDYIETITKE 447


>gi|229175133|ref|ZP_04302649.1| DNA methylase N-4/N-6 domain protein [Bacillus cereus MM3]
 gi|228608269|gb|EEK65575.1| DNA methylase N-4/N-6 domain protein [Bacillus cereus MM3]
          Length = 607

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 160/370 (43%), Gaps = 99/370 (26%)

Query: 18  EWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYN--------LQLNGQLYRPDHSLVD 66
           +W +KI  G+++ V+  L  +    V L++ DPP++        +++ G+    D++  +
Sbjct: 52  DWINKIFWGDNLQVMSHLLKEYRGKVKLVYIDPPFDSKAFYKKQIKVKGKNINNDYNSFE 111

Query: 67  A--VTDSW--DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL- 121
               +D W  D+F  F     + R  L+  R +L  +G++++   Y  + +I  ++  + 
Sbjct: 112 EKQYSDMWVNDEFLQF----LYER--LILIRELLSDDGSIYLHCDYRKVHQIRCIMDEVF 165

Query: 122 ---NFWILNDIV------------WRKS-----------NPMPNFRG------------R 143
              NF  LN IV            W++S           NP+ N+              +
Sbjct: 166 GEDNF--LNSIVWSFSTRSSIKTSWKRSHHDILFYKKGKNPVYNWDDEMVLEPLSESTIK 223

Query: 144 RFQNAHET--------LIWASPSPKAKGYTFNYD------ALKAANEDVQMRSDWL-IPI 188
           ++++  E          I  SP   AK     ++       ++    + ++ SD+  I I
Sbjct: 224 KYKHEDEIGKYRLNGRFIKDSPIKGAKDVDPKWEKTNPELVVRDYLREGKVASDYFFIDI 283

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
            + S   R       +PTQKPE LL +++ +S+KPGDI++D F GSGT+ AVA K  R F
Sbjct: 284 ENQSASTRTD-----YPTQKPEELLYKLISASSKPGDIVMDCFMGSGTTLAVAMKTGRKF 338

Query: 249 IGIEMKQDYIDIATKRIASVQPLGN-------IELTVLTGKRT----------EPRVAFN 291
           IG ++    I   TKR+  V+   N       IE  + TG              P  A  
Sbjct: 339 IGADINLGSIQTTTKRLLKVRNEINSNNNIFEIESELFTGIEVYNVNNYDIFRNPVEAKE 398

Query: 292 LLVERGLIQP 301
           LL+E   IQP
Sbjct: 399 LLIEALEIQP 408


>gi|257076824|ref|ZP_05571185.1| hypothetical protein Faci_07171 [Ferroplasma acidarmanus fer1]
          Length = 619

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 135/299 (45%), Gaps = 58/299 (19%)

Query: 18  EWKDKIIKGNSISVLEKLP----AKSVDLIFADPP--------YNLQLNGQL-YRPDHSL 64
           +WK+K+I G++  V+  L     A  ++LI+ DPP        Y  Q+N       + S+
Sbjct: 66  DWKNKLIWGDNKLVMSSLLKQGWAGKINLIYIDPPFYTGADFSYTTQVNDDTEVEKEPSV 125

Query: 65  VD--AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY---HNIFRIGTMLQ 119
           ++  A  D+W       +Y  +    L   R +L  NG++++   +   H +  I   + 
Sbjct: 126 IEQRAYRDTWS--GGISSYLKYMYERLSIMRDLLADNGSIYIHLDWRVSHYVKIICDEIF 183

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
            +NF  + DIVW             +   H+T+++   + K   +TFN          ++
Sbjct: 184 GINF--MADIVWHYHT--GGVSKLNWGRKHDTILFYVKN-KDSDFTFNL---------IK 229

Query: 180 MRSDWLIPICSGSERLRNKDGEKL------------------------HPTQKPEALLSR 215
            +  +  P  + +E  +  +  K+                        +PTQKPEALL R
Sbjct: 230 EKRYYEKPFFNSTEGYQTDENGKIYVMAHPDDVWDIPAVLNVSSQFIGYPTQKPEALLER 289

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
           ++ +S+  GDI+ D F GSGT+ AVA+KL R +IG ++ +  I ++ KR+  +    N+
Sbjct: 290 VIKASSNKGDIVADFFCGSGTTLAVAEKLGRRWIGSDLSKYAIQVSRKRLLDIHNSKNL 348


>gi|167839692|ref|ZP_02466376.1| site-specific DNA methyltransferase [Burkholderia thailandensis
           MSMB43]
          Length = 230

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 108/250 (43%), Gaps = 36/250 (14%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYN---LQLNGQLYRPDHSLVDAVTDSWDKFSSFE---- 79
           +++++   LP  S+D++F DPPY+   L  + +   P    ++  +D+   ++ FE    
Sbjct: 2   DALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSAKCIN--SDTKTVYTDFESDNM 59

Query: 80  ---AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
              A+  +  AWL  CRR LKP G L     +  +  +  ++Q     +    VW K+  
Sbjct: 60  DQRAWAFWCHAWLSECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILRGVAVWDKTPG 119

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
               R   F    E ++WAS               + A  D  +    + P      RL 
Sbjct: 120 RTRPRRGGFAQQAEFVVWAS---------------RGAMRDCDVYLPGVFPC-----RLP 159

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                K H T+KP   ++R +V     G ++ D F GSGT  A A++    +IG E  Q 
Sbjct: 160 VP---KRHVTEKPLD-IAREVVRLVPAGGVVCDLFAGSGTFLAAAREAGLHWIGCETNQA 215

Query: 257 YIDIATKRIA 266
           Y  IA +R+A
Sbjct: 216 YHAIAEQRLA 225


>gi|307944128|ref|ZP_07659469.1| DNA methylase [Roseibium sp. TrichSKD4]
 gi|307772474|gb|EFO31694.1| DNA methylase [Roseibium sp. TrichSKD4]
          Length = 269

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 107/258 (41%), Gaps = 38/258 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY---RPDHSLVDAVTDSWDKFSSF 78
           ++ + ++++ L    +   D +  DPPY+   +G L+   R   S      +   K+  F
Sbjct: 34  QLFQQDALTWLHDQSSNQFDALVTDPPYS---SGGLHSGSRTADSANRKYVNDEKKYPEF 90

Query: 79  -------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
                   +Y  ++  WL    R+LKP     V   +  +  +   +Q   F     + W
Sbjct: 91  SGENRDQHSYMLWSTLWLTEAHRILKPGSPFLVFTDWRQLSVMINAVQAAGFTYRGCVPW 150

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
            K+      +G RF+   E ++W S     KG     D                 P   G
Sbjct: 151 DKTEACRPQKG-RFRQQAEFVLWGS-----KGAWHGKDG----------------PTYPG 188

Query: 192 SERLR-NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
             R    + G KLH T KP  L+  ++     P   +LDPF GSG++G  A +  R F+G
Sbjct: 189 VIRCSVMQGGPKLHTTGKPVPLMDALV--QVCPEGTVLDPFAGSGSTGVAALRSGRRFVG 246

Query: 251 IEMKQDYIDIATKRIASV 268
            E +Q Y DIA++R+ +V
Sbjct: 247 CEREQAYFDIASERLGTV 264


>gi|217033395|ref|ZP_03438825.1| hypothetical protein HP9810_1g9 [Helicobacter pylori 98-10]
 gi|216944100|gb|EEC23528.1| hypothetical protein HP9810_1g9 [Helicobacter pylori 98-10]
          Length = 369

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 120/285 (42%), Gaps = 56/285 (19%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N I    D+I   +S+  L+KLP   +D++   PPYN  +N            A  D+  
Sbjct: 116 NEIQSCLDQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGIN----------YSATQDA-- 163

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWV---------IGSYHNI--FRIGTMLQNLN 122
             + ++ Y     A    C RVLK  G + V         I ++H I  F I   L    
Sbjct: 164 --NLWQEYFNTLFAIFKECIRVLKNGGRIIVNIQPMFSDYIPTHHFISKFFIDEGL---- 217

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETL-IWASPSPKAKGYTFNYDALKAAN------ 175
            W   +I+W K+N         +   + T   W SP+     Y++ +  +   N      
Sbjct: 218 IW-KGEILWEKNN---------YNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNNLKKEG 267

Query: 176 --EDVQMRSDWLIPICSGS-----ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
             +++ +  D       G      ER   + G   H    PE L+ R L   +   DIIL
Sbjct: 268 DKDNIDITDDEFKKWVYGKWNFAPERNMKQYG---HDAMFPEELVKRCLKLFSYQNDIIL 324

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           DPF G+GT+  VAK+L R FIGI++ + Y ++A  R+  V  L N
Sbjct: 325 DPFNGAGTTTKVAKQLGRRFIGIDISEKYCEVAKARLKEVTNLFN 369


>gi|167757769|ref|ZP_02429896.1| hypothetical protein CLOSCI_00100 [Clostridium scindens ATCC 35704]
 gi|167664651|gb|EDS08781.1| hypothetical protein CLOSCI_00100 [Clostridium scindens ATCC 35704]
          Length = 293

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 116/308 (37%), Gaps = 82/308 (26%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           D II  +++  L +LP++SV+     PPY    +  L+ Q+ R D               
Sbjct: 4   DVIINRDALYALRELPSESVNCCVTSPPYYGLRDYGLDAQIGRED--------------- 48

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLW--VIGSYHNI-FRIGTMLQNL------------ 121
           + E Y           RRVLK +GTLW  +  +Y     + G   ++L            
Sbjct: 49  TPEQYIGRLVEVFRELRRVLKDDGTLWLNIADTYCGTGMKAGCKQKDLIGIPWLLAFALR 108

Query: 122 --NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK------------------- 160
              +++ +DI+W K NPMP     R    +E +   + S K                   
Sbjct: 109 SDGWYLRSDIIWLKENPMPESCRDRPSRCYEHIFLLTKSKKYYYDAAAIAEPIAPGTAAR 168

Query: 161 ---AKGYTFNYDALKAANEDVQ----MRS-----DWLIPICSGSERLRNKDGEKL----- 203
               +G    Y         VQ     RS     D L+P        RNK    L     
Sbjct: 169 YRQGRGAGHKYAEEVPGQGKVQGINKTRSGGYYDDALMPT------TRNKRDVWLINTVP 222

Query: 204 ----HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
               H    P  L    +++    G ++LDPFFGSGT+G  AK L R +IGIE+   Y  
Sbjct: 223 YKGGHFAAYPPKLAETCILAGCPKGGVVLDPFFGSGTTGLAAKSLDRRYIGIELNAGYCA 282

Query: 260 IATKRIAS 267
           +A  RI  
Sbjct: 283 LAGARIGG 290


>gi|297617762|ref|YP_003702921.1| DNA methylase N-4/N-6 domain protein [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297145599|gb|ADI02356.1| DNA methylase N-4/N-6 domain protein [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 264

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 116/261 (44%), Gaps = 31/261 (11%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           + DK+   +++ +L +LP  SVD++F DP YN+   G  YR       +   S+D++   
Sbjct: 7   YLDKVFLMDTMDLLRELPDSSVDMVFGDPDYNV---GVKYRGK-----SYKRSFDEY--I 56

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           E Y    R  L    RVLK  G L+ I        +     +   + ++D  W   N   
Sbjct: 57  EWYVELARESL----RVLKETGNLFFINYPKQNAYLRVKYLDEACYEVHDYAW-VYNSNV 111

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS------ 192
               +RF  AH +++ A  +     Y  N         D ++RS+    + +GS      
Sbjct: 112 GHSPKRFTTAHRSILHARKTKNNDFYKENVAQPYKNPTDRRIRSN----LANGSRGRMPY 167

Query: 193 -----ERLRNKDGEK-LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                + ++N   EK  H  Q P+ L   ++ S T+PGD++L  F GSG+   V K+L R
Sbjct: 168 DWFYFDLVKNVSREKTYHACQIPQKLSELLIKSCTRPGDVVLILFGGSGSELEVCKRLDR 227

Query: 247 SFIGIEMKQDYIDIATKRIAS 267
            +I  E+  DY  +   R+ +
Sbjct: 228 RYISAEVDPDYHRMILHRLEN 248


>gi|268507185|ref|YP_003293984.1| DNA modification methylase [Escherichia coli ETEC H10407]
 gi|266265506|dbj|BAI49210.1| DNA modification methylase [Escherichia coli ETEC H10407]
 gi|309705571|emb|CBJ04416.1| putative site-specific DNA methyl transferase [Escherichia coli
           ETEC H10407]
          Length = 227

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 105/258 (40%), Gaps = 61/258 (23%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPY---LVGFRDRQGRTIAGDKTDDWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                       RVLK +  +     ++ + R  +  +N  F ++  +V           
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLV----------- 96

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK--- 198
                                 +T NY + KAA   V  R +    +  G  RL  K   
Sbjct: 97  ----------------------FTKNYTS-KAAY--VGYRHECAYILAKGRPRLPQKPLP 131

Query: 199 -------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
                   G + HPT+ P   L  ++ S T P  I+LDPF GSG++   A +    +IGI
Sbjct: 132 DVLGWKYSGNRHHPTENPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGCRYIGI 191

Query: 252 EMKQDYIDIATKRIASVQ 269
           E+ + Y     +R+A+VQ
Sbjct: 192 ELLEQYHRAGQQRLAAVQ 209


>gi|84623268|ref|YP_450640.1| site-specific DNA-methyltransferase [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|84367208|dbj|BAE68366.1| site-specific DNA-methyltransferase [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 233

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 104/247 (42%), Gaps = 35/247 (14%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRP------DHSLVDAVTD 70
           K+++++G++++++  L A S D +  DPPY    L    +   P      D    D V D
Sbjct: 2   KNQLLQGDALTIMPTLEANSFDALITDPPYASGGLTAAARARPPSTKYCRDGGHADFVGD 61

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
             D+      + A+ + WL  C R+LK    + +   +  +      LQ   F      V
Sbjct: 62  ERDQ----RGHLAWMQLWLSECARLLKEGAPVLLFTDWRQLPLTTDALQAAGFKWRGVAV 117

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W K+  +    GR F+N  E ++W S     KG                M  D   P+  
Sbjct: 118 WDKTEGVRPQLGR-FRNQAEYIVWGS-----KG---------------GMPLDRRAPVLP 156

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           G  R      +K H T KP  L+ R LV   + G  ILDPF GSGT+   A+     + G
Sbjct: 157 GVVRTPVLKADKHHLTGKPTELM-RSLVRICEAGGRILDPFAGSGTTLVAAELEGYRWTG 215

Query: 251 IEMKQDY 257
           +EM Q Y
Sbjct: 216 VEMTQHY 222


>gi|161521391|ref|YP_001584818.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           multivorans ATCC 17616]
 gi|189352441|ref|YP_001948068.1| putative adenine-specific DNA-methyltransferase [Burkholderia
           multivorans ATCC 17616]
 gi|327198018|ref|YP_004306387.1| gp20 [Burkholderia phage KS5]
 gi|160345441|gb|ABX18526.1| DNA methylase N-4/N-6 domain protein [Burkholderia multivorans ATCC
           17616]
 gi|189336463|dbj|BAG45532.1| putative adenine-specific DNA-methyltransferase [Burkholderia
           multivorans ATCC 17616]
 gi|310657152|gb|ADP02267.1| gp20 [Burkholderia phage KS5]
          Length = 249

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 108/262 (41%), Gaps = 36/262 (13%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR---PDHSLVDAVTDSWDKFSS 77
           ++I   ++ SVL  LP   +DL F DPPY+        R   P    +    D    +  
Sbjct: 11  NRIHLADATSVLRALPDGCIDLTFTDPPYSSGGTTSASRSQTPSSKYIGG--DVKTVYPE 68

Query: 78  FEAYDAFTRAWLLACR-------RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
           F+      R+W   C        RV +    L     +  +  +   +Q   F      V
Sbjct: 69  FQHDSKDQRSWTFWCMTWLAEVYRVSRNEAHLVCFVDWRQLPSLTDAIQAAGFTWRGVAV 128

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W K+N     R   F    E L+WA+     KG                 R+D  +P   
Sbjct: 129 WDKTNGRTRPRAGGFAQQAEFLVWAT-----KGAV--------------RRADVYLPGVF 169

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
            SERL +    K H T+KP A L+R +V     G ++LDPF GSGT    AK+   ++IG
Sbjct: 170 -SERLAHP---KRHMTEKP-AQLAREVVRLAPAGGVVLDPFTGSGTFLDAAKQGGLNWIG 224

Query: 251 IEMKQDYIDIATKRIASVQPLG 272
            E++  Y  +AT R+A +  LG
Sbjct: 225 CELEPAYHQVATARLAGLDTLG 246


>gi|120603779|ref|YP_968179.1| DNA methylase N-4/N-6 domain-containing protein [Desulfovibrio
           vulgaris DP4]
 gi|120564008|gb|ABM29752.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio vulgaris DP4]
          Length = 262

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 103/247 (41%), Gaps = 40/247 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYN---LQLNGQLYRPDHSLVDAVT---------D 70
           +I G S++VL  LP  SVD +  DPPY+   + +  +   P      + T         D
Sbjct: 12  LINGESLAVLRTLPDASVDTVLTDPPYSSGGVTMAARQADPAQKYQQSNTKRTYPTMLGD 71

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
           + D+ S    +  +   WL  C RV K    + V   +  +  +   LQ   +     + 
Sbjct: 72  NRDQRS----FTLWATLWLSECWRVAKDGARIMVFSDWRQLPSMTDALQAAGWQWRGIVT 127

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W K +  P+     F+   E +I  S     KG                M +    P   
Sbjct: 128 WHKPSARPSLGD--FKRDAEFVITGS-----KGKPL-------------MHTRTCPP--- 164

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           G  R       K+H T+KP ALL  +L + T PG ++LDPF GSG++G    +  R ++G
Sbjct: 165 GVYRHSVNTARKIHLTEKPVALLEDLL-AVTAPGGLVLDPFAGSGSTGEACLRTGRRYLG 223

Query: 251 IEMKQDY 257
           IE+  DY
Sbjct: 224 IELSPDY 230


>gi|308062650|gb|ADO04538.1| type IIS restriction enzyme M1 protein (mod) [Helicobacter pylori
           Cuz20]
          Length = 202

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 30/189 (15%)

Query: 96  LKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
           LK  G+ ++  +  N       L +     LN I W K +   N + +R+ +A E++++ 
Sbjct: 5   LKDTGSFYIFNTPFNCALFLAYLHHKKVHFLNFITWVKKDGFANAK-KRYNHAQESILFY 63

Query: 156 SPSPKAKGYTFNYDALKAANEDVQM------------RSDWLIPICSG----------SE 193
           S     K YTFN D ++ A E  +                W  P   G          S+
Sbjct: 64  SMH--KKNYTFNADEVRTAYESTERIKHAQSKGILKNNKRWF-PNPKGKLCLDVWEITSQ 120

Query: 194 RLRNKDGEKL----HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           R   K+  K+    HP+ KP+AL+ R++ +S+   D+ILD F GSG +  VAK L R+FI
Sbjct: 121 RHVEKENGKILKPKHPSIKPKALIERMIKASSHKNDLILDLFSGSGMTSLVAKSLGRNFI 180

Query: 250 GIEMKQDYI 258
           G E   +Y+
Sbjct: 181 GCETHAEYV 189


>gi|331647000|ref|ZP_08348099.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M605]
 gi|331044317|gb|EGI16448.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M605]
          Length = 226

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 105/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I GN + ++   P ++VD I  DPPY   L G   R   S+    TD W + +  + Y
Sbjct: 3   RLILGNCVDIMSGFPDRAVDFILTDPPY---LVGFRDRSGRSIAGDRTDEWLQPACNQMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R     +   F ++  +V+ K+ +    +
Sbjct: 60  ------------RVLKKDALMMSFYGWNRVDRFMAAWKKAGFSVVGHLVFTKNYSSKSAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ ++                            
Sbjct: 108 VGYRHECAYVLAKGRPALPQNPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GS ++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSASTCVAALQAGRRYIGIELME 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+ +VQ
Sbjct: 196 QYHKAGIERLTAVQ 209


>gi|208435275|ref|YP_002266941.1| putative type III restriction enzyme M protein [Helicobacter pylori
           G27]
 gi|208433204|gb|ACI28075.1| putative type III restriction enzyme M protein [Helicobacter pylori
           G27]
          Length = 534

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 126/299 (42%), Gaps = 78/299 (26%)

Query: 23  IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF- 78
           +IKGN++  L  L    AK V  I+ DPPYN                   DS++   +F 
Sbjct: 132 LIKGNNLIALHSLKKKFAKQVKCIYIDPPYN----------------TGNDSFNYNDNFN 175

Query: 79  -EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL----NFWILNDIVWRK 133
             ++  F +  L A R  L  +G++++   Y+ +     ++  +    NF   ++I+WR 
Sbjct: 176 HSSWLVFMKNRLEAAREFLSDDGSIYINLDYNEVHYCKVLMDEIFKRENFR--SEIIWRM 233

Query: 134 SNPMPNFR--GRRFQNAHETLIWASPSPKA---KGYTFNYDAL----------------- 171
              +  ++   +++   H+T+++ S S      K Y  N D L                 
Sbjct: 234 G-FLSGYKTAAKKYIRNHDTILFYSKSDNYLFNKTYIENKDFLPLLTKNEVQNAFKKFSF 292

Query: 172 -------------------KAANEDVQMRSDW----LIPICSGSERLRNK---DGEKLHP 205
                              K   ED    + W     I I S   R+      D E    
Sbjct: 293 PQEKIDDFLTFINHENRSEKYPLEDTWNSNKWDKLNSIAIDSSVSRVDETIAIDDENF-K 351

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            QKPE+L+ RIL  ST   D++LD F GSGT+ AVA K++R +IGIE + DYI+  TK 
Sbjct: 352 GQKPESLIQRILEVSTNENDLVLDFFAGSGTTCAVAHKMKRRYIGIE-QMDYIETITKE 409


>gi|134288033|ref|YP_001110197.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134132683|gb|ABO60309.1| DNA methylase N-4/N-6 domain protein [Burkholderia vietnamiensis
           G4]
          Length = 252

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 114/260 (43%), Gaps = 41/260 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +++G+ + +LE +P  S+D++  D PY                      WD      A  
Sbjct: 9   LMQGDCLELLETIPDNSIDMVCCDMPYG----------------TTNCRWD------ATL 46

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
              R W    RRV   N  + +       F     + NL  W+  +++W+K++   +   
Sbjct: 47  DLRRLWA-QYRRVTTENAAIVLFA--QTPFDKVLGVSNLE-WLRYELIWQKTHATGHLNA 102

Query: 143 RRF-QNAHET-LIWASPSP-----KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           ++    AHE  L++ +  P     K  G+       +  N  V    +++      ++R 
Sbjct: 103 KKMPMKAHENILVFYNKLPTYNPQKTTGHIRKTSVKRRDNTSVYGEQNFVELSYESTDRH 162

Query: 196 RN------KDGEK--LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                   KD ++  LHPTQKP AL+  ++ + T  GD +LD   GSGT+G   ++L R 
Sbjct: 163 PRSVLTFPKDTQRIALHPTQKPLALIEWLVSTFTNEGDAVLDNCMGSGTTGEACQRLGRR 222

Query: 248 FIGIEMKQDYIDIATKRIAS 267
           F+G+E+ + +  +A+ RI S
Sbjct: 223 FVGMELDESHFAVASSRILS 242


>gi|162147849|ref|YP_001602310.1| modification methylase MjaV [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209542469|ref|YP_002274698.1| DNA methylase N-4/N-6 domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786426|emb|CAP56008.1| putative modification methylase MjaV [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530146|gb|ACI50083.1| DNA methylase N-4/N-6 domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 271

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 117/272 (43%), Gaps = 51/272 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++++G+ + VL ++ A SVD++   PPYN+ L  + Y              D+ S  +  
Sbjct: 18  QLVRGDCLRVLRRMDADSVDVVVTSPPYNIGLGYRTYS-------------DRMSETQYL 64

Query: 82  DAFTRAWLLAC----RRVLKPNGTLW--VIGSYHNI---FRIGTMLQNLNFWILNDIVWR 132
           D     W++A      RV++P+G+ +  + GS       F +   L+ + F + N I W 
Sbjct: 65  D-----WMMAVARELHRVMRPDGSFFLNIAGSSAQPWIPFELAVRLREI-FHLQNHISWI 118

Query: 133 KSNPM---------PNFRGRRFQNAHETLIWASPSPKAK------GYTFNYD---ALKAA 174
           KS  +         P    R     HE L   + S   +      G  +      A +  
Sbjct: 119 KSVSVNEDTFGHFKPVNSARYLHRNHEHLFHLTRSGTVELNRLDIGVPYKDKSNIARRGH 178

Query: 175 NEDVQMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
            +D + R D W IP     E ++ K  +  HP   P  L    +    +PG ++LDPF G
Sbjct: 179 EQDRRCRGDTWFIPY----ETVQGKAQKFNHPGTFPVQLPRMCIRLHGRPGAVVLDPFMG 234

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           +GT+   A++     IGI++   Y+ +A  R+
Sbjct: 235 TGTTLVAAQEEGARAIGIDLDTAYVTVARDRL 266


>gi|46581137|ref|YP_011945.1| adenine specific DNA methyltransferase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46450558|gb|AAS97205.1| adenine specific DNA methyltransferase, putative [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311234813|gb|ADP87667.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio vulgaris RCH1]
          Length = 249

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 110/264 (41%), Gaps = 40/264 (15%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN---LQLNGQLYRPDHSLVDAVT----- 69
           E +  +I+G +++VL  LP  +VD +  DPPY+   + +  +   P      + T     
Sbjct: 6   EERVTLIQGEALTVLRTLPTGAVDTVLTDPPYSSGGITMAARQVDPAQKYQQSNTKRTYP 65

Query: 70  ----DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
               D+ D+ S    +  +   WL  C RV K    + V   +  +  +   LQ   +  
Sbjct: 66  AMLGDNRDQRS----FTLWATLWLSECWRVAKDGARIMVFTDWRQLPAMTDALQAAGWMW 121

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
              + W K +  P+     F+   E +I  S     KG                M +   
Sbjct: 122 RGVVTWHKPSARPSLGD--FKRDAEYVITGS-----KG-------------KPTMHTRTC 161

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKL 244
            P   G  R       K H T+KP ALL  +L V++  P  ++LDPF GSG++G      
Sbjct: 162 PP---GVYRHSVNAARKTHLTEKPVALLEDLLAVTAPGPDALVLDPFAGSGSTGVACLNT 218

Query: 245 RRSFIGIEMKQDYIDIATKRIASV 268
            R F+GIE+  +Y   A+ R+A V
Sbjct: 219 GRRFVGIELSAEYHARASNRLAEV 242


>gi|312620950|ref|YP_003927880.1| hypothetical protein pBS02_002 [Bacillus sp. BS-02]
 gi|307543258|gb|ADN44272.1| hypothetical protein [Bacillus sp. BS-02]
          Length = 571

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 127/287 (44%), Gaps = 65/287 (22%)

Query: 23  IIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           IIKGN++  L  L  +    + +I+ DPPYN   +   Y              DKF+   
Sbjct: 180 IIKGNNLIALHSLKERYENKIKMIYIDPPYNTGNDSFKYN-------------DKFNH-S 225

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL----NF-----WILNDIV 130
            + AF +  L     +L  +G++++    + +  +  ++  +    NF     W+L  + 
Sbjct: 226 TWLAFVKNRLEIAYSLLSQDGSIYIQIDNNEVHYLKVLMDEIFGENNFQREIIWVLKGVS 285

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ----------- 179
             KS  M N     F   HET+++ S S +   ++FN   L  +   ++           
Sbjct: 286 GYKS--MIN----NFVRGHETILFYSKSSE---FSFNKQYLPYSEAQLKRFTKKDKDGRT 336

Query: 180 ------MRSDWL-----IPIC------SGSERLRNKDGEKLHPTQKPEALLSRILVSSTK 222
                  R  +L     IPI       +  + + N        TQKPE L+ RI+ SS+ 
Sbjct: 337 YKPITKTRRMYLDEAKGIPISDVWDDIASFQTVVNAQERVGFNTQKPEKLIQRIIDSSSN 396

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRIASV 268
            GDIILD F GS T+ AVA K+ R +IGIE + DYI+ ++  R+  V
Sbjct: 397 KGDIILDFFMGSSTTQAVAHKMGRQYIGIE-QMDYINTVSVPRLQKV 442


>gi|71898330|ref|ZP_00680503.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
 gi|71731853|gb|EAO33911.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
          Length = 200

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 86/195 (44%), Gaps = 28/195 (14%)

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
           F     + A++  WL  CRRV +P G L V   +  +  +   +Q+  +     +VW K+
Sbjct: 28  FRDHRGFLAWSSQWLSECRRVTRPGGVLLVFTDWRMLPTLTDAVQSAGWAWQGIVVWDKT 87

Query: 135 NPMPNFRGRRFQNAHETLIWASP---SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
            P    +  RF++  E ++WAS    +PKA   T                     P+  G
Sbjct: 88  -PACRPQLGRFRSQAEFIVWASCGLMNPKAHPVT---------------------PV--G 123

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
                    EK H   KP AL+   LV    P   +LDPF GSGT+G  A +    FIG+
Sbjct: 124 VFATGTAPREKRHQVGKPLALMEH-LVKIVPPTSTVLDPFAGSGTTGVAALRAGHQFIGM 182

Query: 252 EMKQDYIDIATKRIA 266
           E+   Y D+A +R+A
Sbjct: 183 EISPWYCDVAKQRLA 197


>gi|325263278|ref|ZP_08130013.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. D5]
 gi|324031671|gb|EGB92951.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. D5]
          Length = 319

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 129/333 (38%), Gaps = 105/333 (31%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPD--HSLVDAVTDSWDK 74
           D II  +++  L +LP +SV      PPY    +  L+ Q+ R D     +D +T+ + +
Sbjct: 7   DTIINRDALYALRELPEESVHCCVTSPPYYALRDYGLDAQIGREDTPEQYIDRLTEVFRE 66

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWV------IGS----YH--------------N 110
                             RRVL+ +GT W+       G+    YH              +
Sbjct: 67  L-----------------RRVLRSDGTFWLNIADTYCGTGNKGYHADPKNPKGRNGQAVS 109

Query: 111 IFR----------------IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
           I R                +   L+   +++ +DI+W+K NPMP     R    +E +  
Sbjct: 110 IARQAAGCKQKDLIGIPWLLAFALRADGWYLRSDIIWQKENPMPESVKDRPTRCYEHIFL 169

Query: 155 ASPSPKAKGYTFNYDAL------------KAANEDVQMRSDWLIP---ICSGSERLRNKD 199
            +   K+K Y ++  A+            +      Q  +D  IP      G  R R+  
Sbjct: 170 LT---KSKKYFYDAAAIAEPLAPTTAARYRTGRSAGQKYAD-EIPGQGKVQGLNRARSGS 225

Query: 200 --GEKLHPTQK---------------------PEALLSRILVSSTKPGDIILDPFFGSGT 236
              E L PT +                     P  L    + +    G ++LDPFFGSGT
Sbjct: 226 YYDEALMPTMRNRRDVWLINTVPYKGGHFAAFPPKLAETCIKAGCPKGGVVLDPFFGSGT 285

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           +GA AK+L R +IGIE+  +Y  +A  RI   +
Sbjct: 286 TGAAAKQLHRHYIGIEINAEYCALARARIGGTE 318


>gi|114328990|ref|YP_746147.1| modification methylase MjaV [Granulibacter bethesdensis CGDNIH1]
 gi|114317164|gb|ABI63224.1| modification methylase MjaV [Granulibacter bethesdensis CGDNIH1]
          Length = 326

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 117/280 (41%), Gaps = 51/280 (18%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           E + ++  G+ ++VL  L   SVD+I   PPYNL L    Y              D    
Sbjct: 68  EDRHRLYCGDCLTVLPFLAEGSVDVIVTSPPYNLDLGYASY-------------LDSRGE 114

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLW--VIGS-------YHNIFRIGTMLQNLNFWILND 128
            E  D  T+    A +RVL P G+ +  V GS       +  I R+ T+     F + N 
Sbjct: 115 EEYLDWMTQV-ATALKRVLAPGGSFFLNVSGSPSRPWLPFELIVRLRTL-----FVLQNH 168

Query: 129 IVWRKSNPMPNFR--------GRRFQN-AHETLIWASPSPKAK------GYTFNYDA--- 170
           IVW KS   P           G+RF N A E +   +     K      G  +   +   
Sbjct: 169 IVWIKSVATPAVSVGHYKPVNGKRFLNHAQEHIFHLTHKGDVKLDRLAVGVPYKDKSNIV 228

Query: 171 LKAANEDVQMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
            +   +D++ R + W IP     E +R+K  + LHP   P  L    +        ++LD
Sbjct: 229 RRGHAQDLRCRGNTWFIPY----ETVRSKSQKFLHPGTFPVTLPRWCIRLHGVADALVLD 284

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           PF G+GT+G  A+      IGIE+ Q YI IA  R+   +
Sbjct: 285 PFMGTGTTGVAAQAEGARSIGIELDQGYISIAANRMMEAE 324


>gi|255008166|ref|ZP_05280292.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides
           fragilis 3_1_12]
          Length = 270

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 118/268 (44%), Gaps = 48/268 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+I   + +  ++++   SVD I AD PY     G L R + S+      +WD+     A
Sbjct: 5   DRIYLMDCMEGMKQIADGSVDAIIADLPY-----GVLNRSNPSV------NWDRQIPLAA 53

Query: 81  -YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            ++ +        RR+ KP+  + + G    +F    ML     W  N +VW+K     +
Sbjct: 54  LWEQY--------RRITKPDSPIILFG--QGLFSAWLMLSQPRLWRYN-LVWQKDRVTGH 102

Query: 140 FRGRRFQ-NAHETLI-----------WASPSP---------KAKGYTFN-YDALKAANED 177
              +R     HE ++             +P P         K +G+T   Y  +K +   
Sbjct: 103 LNAKRMPLRQHEDILVFYKKQPAYHPQMTPCPPERRNHGRRKTEGFTNRCYGTMKLSPVR 162

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           +   +D   P         +K G   HPTQKP AL+  ++ + T  GD++LD   GSGT+
Sbjct: 163 I---ADDKYPTSVIFMPKEHKKGAFYHPTQKPVALMEYLIRTYTDEGDVVLDNCIGSGTT 219

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRI 265
              A +  R +IG E++Q Y +IA ++I
Sbjct: 220 AVAAIRTGRHYIGFEIEQAYCEIAERQI 247


>gi|326784381|ref|YP_004324665.1| DNA adenine methylase [Synechococcus phage S-SSM5]
 gi|310003612|gb|ADO98008.1| DNA adenine methylase [Synechococcus phage S-SSM5]
          Length = 285

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 14/146 (9%)

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
           +++  DI+W K NPMP     R   +HE +   S   K++ Y F+ +A+K A    + RS
Sbjct: 144 WYLRQDIIWNKPNPMPESVRDRCTKSHEYIFLLS---KSQNYYFDVNAIKEATR--RKRS 198

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
            W          ++ K  +  H    P  L+   + + +    IILDPF GSGT+  VAK
Sbjct: 199 VW---------NVKTKPYKGSHCAVFPPELIEPCIKAGSDINHIILDPFIGSGTTAMVAK 249

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASV 268
           +L R +IG E+  +Y ++   RI + 
Sbjct: 250 QLGRHYIGCELHPEYKNLINDRIPNT 275


>gi|260588437|ref|ZP_05854350.1| DNA (cytosine-5-)-methyltransferase [Blautia hansenii DSM 20583]
 gi|260541311|gb|EEX21880.1| DNA (cytosine-5-)-methyltransferase [Blautia hansenii DSM 20583]
          Length = 238

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 102/246 (41%), Gaps = 56/246 (22%)

Query: 39  SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKP 98
            VD I  DPPY ++                   WDK   F    A        C  +LK 
Sbjct: 25  KVDAIICDPPYLIK----------------QADWDK--EFNMPLAIN-----LCYDLLKD 61

Query: 99  NGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR----RFQNAHETLIW 154
           NG L +   + N+ +   +L    F I N IVW +       +GR     F +  E ++W
Sbjct: 62  NGNLILFQGWSNVLQTKELLDE-KFEIQNWIVWDR------IKGRGAKKNFVSTREDILW 114

Query: 155 ASPSPKAKGYTFN--YDAL---------KAANEDVQMRSDW--LIPICSGSERLRNKDGE 201
                K    TFN  Y  +         K   E   + + W  + PI   S   + ++G 
Sbjct: 115 YCKGDKP---TFNKIYSNIPKKTGGMGKKNGQECRALTNVWYDISPIVPWS---KERNG- 167

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP  L+ R +   T  GD +LD   GSGT+G   K L R FIGIE +++Y +IA
Sbjct: 168 --HPTQKPLQLMERCVTIWTNEGDTVLDFTMGSGTTGEACKNLNRKFIGIEKEEEYFNIA 225

Query: 262 TKRIAS 267
             R+  
Sbjct: 226 KDRLKE 231


>gi|58040318|ref|YP_192282.1| DNA-methyltransferase (DNA-modification methylase) protein
           [Gluconobacter oxydans 621H]
 gi|58002732|gb|AAW61626.1| Probable DNA-methyltransferase (DNA-modification methylase) protein
           [Gluconobacter oxydans 621H]
          Length = 272

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 125/273 (45%), Gaps = 50/273 (18%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR---PDHSLVDAVTDSWDKFSSFE 79
           +I+G+  +VL ++P++SVD++   PPYNL +  + Y+   P+ + +D + D         
Sbjct: 14  LIRGDCTTVLRRMPSQSVDVVVTSPPYNLGVPYRTYQDRLPEDAYLDWLEDVCTSLC--- 70

Query: 80  AYDAFTRAWLLACRRVLKPNGTLW--VIGSYHNI---FRIGTMLQNLNFWILNDIVWRKS 134
                         RV+K +G+ +  + GS       F + T L+ L F + N I W KS
Sbjct: 71  --------------RVMKDDGSFFLNIAGSSSQPWMPFELMTRLRKL-FVLQNHITWIKS 115

Query: 135 -----------NPM--PNFRGRRFQNA-HETLIWASPSPKAKG---YTFNYDALKAAN-E 176
                       P+    F  R  ++  H T     P  +      +T   + ++  +  
Sbjct: 116 ISVGEITYGHFKPLNSARFVNRNHEHVFHLTKTGNVPVQRLDAGVPFTDKSNIVRRQHIT 175

Query: 177 DVQMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSR-ILVSSTKPGDIILDPFFGS 234
           D + R D W IP     E +R++  +  HP   P AL    I +   +PG ++LDPF GS
Sbjct: 176 DRRCRGDTWFIPY----ETVRSRKEKFSHPGTFPVALPEACIRLHGLRPGGVLLDPFMGS 231

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           GT+   A+++    IGI+    Y+++A KR+ +
Sbjct: 232 GTTLVAAERMGCVGIGIDTDTSYVNVARKRVRA 264


>gi|317181656|dbj|BAJ59440.1| DNA methylase [Helicobacter pylori F57]
          Length = 369

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 119/285 (41%), Gaps = 56/285 (19%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N I    D+I   +S+  L+KLP   +D++   PPYN  +N            A  D+  
Sbjct: 116 NEIQSCLDQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGIN----------YSATQDA-- 163

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWV---------IGSYHNI--FRIGTMLQNLN 122
             + ++ Y     A    C RVLK  G + V         I ++H I  F I   L    
Sbjct: 164 --NLWQEYFNTLFAIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISKFFIDEGL---- 217

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETL-IWASPSPKAKGYTFNYDALKAAN------ 175
            W   +I+W K+N         +   + T   W SP+     Y++ +  +   N      
Sbjct: 218 IW-KGEILWEKNN---------YNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNNLKKEG 267

Query: 176 --EDVQMRSDWLIPICSGS-----ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
             + + +  D       G      ER   + G   H    PE L+ R L   +   DI+L
Sbjct: 268 DKDSIDITDDEFKKWVYGKWNFAPERNMKQYG---HDAMFPEELVKRCLKLFSYQNDIVL 324

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           DPF G+GT+  VAK+L R FIGI++ + Y ++A  R+  V  L N
Sbjct: 325 DPFNGAGTTTKVAKQLGRRFIGIDISEKYCEVARARLKEVTNLFN 369


>gi|328885682|emb|CCA58921.1| DNA methylase [Streptomyces venezuelae ATCC 10712]
          Length = 251

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 109/264 (41%), Gaps = 33/264 (12%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT--DSWDKFSSFEAYDA 83
           G+++ VL  LP   VD +  DPPYN        R   +     T  D+  + + F   + 
Sbjct: 8   GDALGVLAGLPDDCVDAVITDPPYNSGGRTAKERTSRTARQKYTSADAGHELADFPGENM 67

Query: 84  FTRAW-------LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             R++       +    R+ KP GT  +   +  +      +Q   +     + W K   
Sbjct: 68  DQRSYGFWLTQIMTEAHRLTKPGGTALLFTDWRQLPVTTDAIQAAGWLWRGVLAWHKPQA 127

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
            P  +GR F+ + E ++WAS             A+  +   V +   +     SG  R  
Sbjct: 128 RPQ-KGR-FKQSCEFIVWASNG-----------AIDGSRNPVYLPGLYSASQPSGKARQ- 173

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                  H TQKP  ++ R LV  + PG  +LD   GSG++G  A    R FIG+E  + 
Sbjct: 174 -------HITQKPVEVM-RELVKISPPGGTVLDFTCGSGSTGVAALLEGRDFIGVEKTRH 225

Query: 257 YIDIATKRIASV--QPLGNIELTV 278
           Y +IA+ R+     Q LG   LT+
Sbjct: 226 YAEIASDRLTETLHQTLGQDNLTL 249


>gi|227874998|ref|ZP_03993147.1| adenine-specific DNA-modification methylase [Mobiluncus mulieris
           ATCC 35243]
 gi|227844447|gb|EEJ54607.1| adenine-specific DNA-modification methylase [Mobiluncus mulieris
           ATCC 35243]
          Length = 354

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 40/236 (16%)

Query: 53  LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA--FTRAWLLACRRVLKPNGTLWVIGSYHN 110
             GQ Y+   ++   VT   D+F+ +  + A     AW     RVLKP+GTL++   Y  
Sbjct: 128 FKGQSYK---TIRGQVTSYNDEFADYWGFLAPRLEEAW-----RVLKPSGTLYLHLDYRE 179

Query: 111 IFRIGTMLQNL--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
           +     +L  L      LN+I+W  +        RR+   H+ ++     PK   Y F+ 
Sbjct: 180 VHYAKVLLDALFGRECFLNEIIW--AYDYGARTKRRWPAKHDNILVYVKDPKQ--YYFDS 235

Query: 169 DALKAANEDVQMRSDWLIP-ICSGSERLRNK--------------DGEKL-HPTQKPEAL 212
           +++         R  ++ P + +  +  R K                EK  + TQKPE +
Sbjct: 236 ESVD--------REPYMAPGLVTAEKAARGKLPTDVWWHTIVSPTGKEKTGYATQKPEGI 287

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           L RI+ +S++PGD +LD F GSGT+GAVA K+ R F+ ++     I +   R A+ 
Sbjct: 288 LRRIVAASSRPGDWVLDFFAGSGTTGAVAGKMGRHFVLVDENPQAIAVMRARFAAA 343


>gi|71902388|ref|ZP_00684352.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
 gi|71727876|gb|EAO30113.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
          Length = 200

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 83/195 (42%), Gaps = 28/195 (14%)

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
           F     + A++  WL  CRRV +P G L V   +  +  +   +Q+   W+   IV    
Sbjct: 28  FRDHRGFLAWSSQWLSECRRVTRPGGVLLVFTDWRMLPTLTDAVQSAG-WVWQGIVVWDK 86

Query: 135 NPMPNFRGRRFQNAHETLIWASP---SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
            P    +  RF++  E ++WAS    +PKA   T                     P+  G
Sbjct: 87  TPACRPQLGRFRSQAEFIVWASCGLMNPKAHPVT---------------------PV--G 123

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
                    EK H   KP AL+   LV    P   +LDPF GSGT+G  A +    FIG+
Sbjct: 124 VFATGTAPREKRHQVGKPLALMEH-LVKIVPPASTVLDPFAGSGTTGVAALRAGHRFIGM 182

Query: 252 EMKQDYIDIATKRIA 266
           E+   Y D+  +R+A
Sbjct: 183 ELSPWYCDVTKQRLA 197


>gi|51596132|ref|YP_070323.1| DNA methyltransferase [Yersinia pseudotuberculosis IP 32953]
 gi|51589414|emb|CAH21036.1| putative DNA methyltransferase [Yersinia pseudotuberculosis IP
           32953]
          Length = 308

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 120/310 (38%), Gaps = 80/310 (25%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I  G+ I  + K+P +SV      PPY            + L D   +   +    E+ 
Sbjct: 4   QIFIGDCIDSMRKMPDQSVHSCITSPPY------------YGLRDYGVEG--QIGLEESP 49

Query: 82  DAFTR---AWLLACRRVLKPNGTLWV-------IGSYHN--IFRIGTMLQNLNFWILNDI 129
            AF +   A     RRVL+ +GTLWV        G   N   +R    LQN  + +  DI
Sbjct: 50  AAFIQRLVAVFREVRRVLRDDGTLWVNMGDSWDKGKQLNGMPWRFAFALQNDGWILRQDI 109

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN-------------- 175
           +W KSNPMP     R   AHE +   S   K+K Y F+++A++  +              
Sbjct: 110 IWHKSNPMPESVRDRCTKAHEYIFLLS---KSKSYYFDHEAIREPSVYSGKNTGVGFGHG 166

Query: 176 -------------------EDVQ------------MRSDWLIPICSGSERLRN------K 198
                              ED +             R+D    +  G    RN      +
Sbjct: 167 MDKSDRNRGRISARDNFKREDSKRAVVIPGQNVGTHRADRKDTVSDGMRAKRNVWTVATR 226

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
             ++ H    P AL+   +++    G +ILDPF GSGT+  VA    R  I  E+   Y 
Sbjct: 227 GYKEAHFATFPPALIEPCVLAGCPTGGVILDPFGGSGTTAGVAIGSGRKAILCELNPAYA 286

Query: 259 DIATKRIASV 268
           ++   RI S+
Sbjct: 287 ELVPARIESI 296


>gi|22299025|ref|NP_682272.1| adenine specific DNA methylase [Thermosynechococcus elongatus BP-1]
 gi|22295207|dbj|BAC09034.1| Adenine specific DNA methylase [Thermosynechococcus elongatus BP-1]
          Length = 385

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 131/287 (45%), Gaps = 57/287 (19%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQLN----------GQLYRPDHSLVDAVT--DSWDKFSS 77
           ++LE+   K +DLI+ DPP+++  +          G+  + + S+++AV   D+W K + 
Sbjct: 96  ALLEQFRGK-IDLIYIDPPFDVGADFTMQVQIGEEGEAVQKEQSILEAVAYRDTWGKGTD 154

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL------NFWILNDIVW 131
              +  + R  L+  R +L   G+++V    H  +R+   L+ +          LN I+W
Sbjct: 155 SYLHMMYERLTLM--RELLSERGSIYV----HCDWRMNAFLRQVLDDIFGRDRFLNHIIW 208

Query: 132 R-KSNPMPNFRGRRFQNAHETLIWASPSPK-------AKGYTFNY-DALKAANEDVQMRS 182
             K+  +P   G  F   H+ ++  + S          K Y     +    + + + ++ 
Sbjct: 209 AYKTGGIPENVG--FSKKHDDILIYTKSDTPVFNQLLQKSYVPTLPEPTTISGKQLGVQR 266

Query: 183 DWLIPICSGSER--------------------LRNKDGEKLHPTQKPEALLSRILVSSTK 222
           D +  +C G  R                     RN        TQKPEALL RI+ +S+ 
Sbjct: 267 DEVCELC-GVGRPGQKYRNVIMRDVWDDIQSIFRNDQQTTGFDTQKPEALLERIIKASSN 325

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            GD++ D F GSGT+ AVA+KL R +IG+++ +  I    KR+  VQ
Sbjct: 326 EGDLVADFFCGSGTTLAVAEKLGRRWIGVDLGRYAIHTTRKRLIQVQ 372


>gi|160886756|ref|ZP_02067759.1| hypothetical protein BACOVA_04769 [Bacteroides ovatus ATCC 8483]
 gi|298383581|ref|ZP_06993142.1| DNA (cytosine-5-)-methyltransferase [Bacteroides sp. 1_1_14]
 gi|156107167|gb|EDO08912.1| hypothetical protein BACOVA_04769 [Bacteroides ovatus ATCC 8483]
 gi|298263185|gb|EFI06048.1| DNA (cytosine-5-)-methyltransferase [Bacteroides sp. 1_1_14]
          Length = 267

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 112/268 (41%), Gaps = 48/268 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I   + I  ++ +   SVD + AD PY     G L R + ++       WD+    EA
Sbjct: 5   DNIYNMDCIEGMKLMANGSVDAVIADLPY-----GVLNRSNKAV------HWDRQIPLEA 53

Query: 81  -YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            ++ +        RR+ KP     VI     IF    ML     W  N +VWRK     +
Sbjct: 54  LWEQY--------RRITKPGSP--VILFAQGIFSARLMLSQPRMWRYN-LVWRKDRVTGH 102

Query: 140 FRGRRFQ-NAHETLI-----------WASPSP---------KAKGYTFN-YDALKAANED 177
               R     HE +I              P P         K  G+T   Y  +K A   
Sbjct: 103 LNANRMPLRQHEDIIVFYDRQPVYHPQMMPCPPERKNHGRRKTDGFTNRCYGEMKLA--P 160

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           V++  D   P    S    +K G   HPTQKP AL+  ++ + T  GD++LD   GSGT+
Sbjct: 161 VRVAEDKY-PTSVISIPKEHKTGAFYHPTQKPVALIEYLMRTYTNEGDVVLDNCIGSGTT 219

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRI 265
              A +  R +IG E++  Y +IA +RI
Sbjct: 220 AIAAIRTGRHYIGFEIEPTYCEIAGRRI 247


>gi|317476165|ref|ZP_07935417.1| DNA methylase [Bacteroides eggerthii 1_2_48FAA]
 gi|316907803|gb|EFV29505.1| DNA methylase [Bacteroides eggerthii 1_2_48FAA]
          Length = 280

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 116/268 (43%), Gaps = 48/268 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+I   + +  ++++   SVD I AD PY     G L R + S       +WD+     A
Sbjct: 5   DRIYLMDCMEGMKQIADGSVDAIIADLPY-----GVLNRSNPSA------NWDRQIPLTA 53

Query: 81  -YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            ++ +        RR+ KP+  + + G    +F    ML     W  N +VW+K     +
Sbjct: 54  LWEQY--------RRITKPDSPIILFG--QGLFSAWLMLSQPRLWRYN-LVWQKDRVTGH 102

Query: 140 FRGRRFQ-NAHETLI-----------WASPSP---------KAKGYTFN-YDALKAANED 177
              +R     HE ++             +P P         K +G+T   Y  +K +   
Sbjct: 103 LNAKRMPLRQHEDILVFYKKQPVYHPQMTPCPSERRNHGRRKTEGFTNRCYGTMKLSPVR 162

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           +   +D   P         +K G   HPTQKP AL+  ++ + T  GD++LD   GSGT+
Sbjct: 163 I---ADDKYPTSVIFMPKEHKKGAFYHPTQKPVALMEYLIRTYTDEGDVVLDNCIGSGTT 219

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRI 265
              A +  R +IG E++Q Y +I  +RI
Sbjct: 220 AVAAIRTGRHYIGFEIEQAYCEITERRI 247


>gi|238025810|ref|YP_002910041.1| hypothetical protein bglu_1g01350 [Burkholderia glumae BGR1]
 gi|237875004|gb|ACR27337.1| Hypothetical protein bglu_1g01350 [Burkholderia glumae BGR1]
          Length = 258

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 105/250 (42%), Gaps = 36/250 (14%)

Query: 27  NSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDA-VTDSWDKFSS----F 78
           +++ +   LP  S+D++F DPPY    L L+ +        + + +   ++ F       
Sbjct: 25  DALELARSLPDHSIDMVFTDPPYASGGLHLSAKTRSVQAKYIQSGIAVDYENFEGDNMDQ 84

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            A+  +  AWL  CRR +KP G L     +  +  +  ++Q          VW K+    
Sbjct: 85  RAWAFWCHAWLSECRRAMKPGGLLACFIDWRQLATLTDVVQAAGLIFRGIAVWDKTPG-- 142

Query: 139 NFRGRR--FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
            FR RR  F    E L+WAS                    D++    +L  + S    L 
Sbjct: 143 RFRPRRGGFAQQAEFLVWAS------------------RGDMRQSEVYLPGVFSVRLPL- 183

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                K H T+KP  L +R +V       ++ DPF GSGT    A+    S+IG E  + 
Sbjct: 184 ----PKQHVTEKPLDL-AREVVRLVPADGVVFDPFAGSGTHLVAARDAGLSWIGAETNRR 238

Query: 257 YIDIATKRIA 266
           Y ++AT R+A
Sbjct: 239 YHEVATARLA 248


>gi|297380548|gb|ADI35435.1| Modification methylase [Helicobacter pylori v225d]
          Length = 200

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 30/189 (15%)

Query: 96  LKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
           LK  G+ ++  +  N       L +     LN I W K +   N + +R+ +A E++++ 
Sbjct: 5   LKDTGSFYIFNTPFNCALFLAYLCHKKVHFLNFITWVKKDGFANAK-KRYNHAQESILFY 63

Query: 156 SPSPKAKGYTFNYDALKAANEDVQM------------RSDWLIPICSG----------SE 193
           S     K YTFN D ++ A E  +                W  P   G          S+
Sbjct: 64  SMH--KKNYTFNADEVRTAYESTERIKHAQSKGILKNNKRWF-PNPKGKLCLDVWEITSQ 120

Query: 194 RLRNKDGEKL----HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           R   K+  K+    HP+ KP+AL+ R++ +S+   D+ILD F GSG +  VAK L R+FI
Sbjct: 121 RHVEKENGKILKPKHPSIKPKALIERMIKASSHKNDLILDLFSGSGMTSLVAKSLGRNFI 180

Query: 250 GIEMKQDYI 258
           G E   +Y+
Sbjct: 181 GCETHAEYV 189


>gi|38638617|ref|NP_944318.1| gp10 [Burkholderia phage Bcep1]
 gi|34485999|gb|AAQ73356.1| gp10 [Burkholderia phage Bcep1]
          Length = 233

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 107/267 (40%), Gaps = 58/267 (21%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G+ +  + +LPA+SVDL+  D PY    N                 WD           +
Sbjct: 3   GDCLLAMHELPAQSVDLVLCDLPYGTTRN----------------RWDTPLDL------S 40

Query: 86  RAWLLACRRVLKPNGTLWVIGS--YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
           R W+ A R V KP   + +     +  +     + +    WI     W K+N       +
Sbjct: 41  RLWV-AYRHVCKPGAPVLLFAQTPFDKVLGASNLPELRYEWI-----WEKTNATGFLNAK 94

Query: 144 RFQ-NAHET-LIWASPSPKAK---------------GYTFNYDALKAANEDVQMRSDWLI 186
           R    AHE  L++   +P  +               GY+ NY A   ++ D   R    +
Sbjct: 95  RAPLKAHENILVFCDRAPTYRPIKTSGHVRKTSTRLGYSSNYGAQAVSSYDSTERYPRSV 154

Query: 187 PICSGSERLR---NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
                   LR   +K   KLHPTQKP ALL  ++ +   PG ++LD   G  ++   A +
Sbjct: 155 --------LRFASDKQRSKLHPTQKPVALLEYLIRTHAAPGAVVLDNCMGCASTALAAMQ 206

Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQP 270
              +FIGIE   ++ + A +R+   QP
Sbjct: 207 AGCAFIGIENDVEHFETAQRRVRDYQP 233


>gi|317179582|dbj|BAJ57370.1| putative type III restriction enzyme M protein [Helicobacter pylori
           F30]
          Length = 569

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 125/299 (41%), Gaps = 78/299 (26%)

Query: 23  IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF- 78
           +IKGN++  L  L    AK V  I+ DPPYN                   DS++   +F 
Sbjct: 167 LIKGNNLIALHSLKKKFAKQVKCIYIDPPYN----------------TGNDSFNYNDNFN 210

Query: 79  -EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL----NFWILNDIVWRK 133
             ++  F +  L   R  L  +G++++   Y+ +     ++  +    NF   ++I+WR 
Sbjct: 211 HSSWLVFMKNRLEVAREFLSDDGSIYINLDYNEVHYCKVLMDEIFKRENFR--SEIIWRM 268

Query: 134 SNPMPNFR--GRRFQNAHETLIWASPSPKA---KGYTFNYDALKAAN------------- 175
              +  ++   +++   H+T+++ S S      K Y  N D L+                
Sbjct: 269 G-FLSGYKTAAKKYIRNHDTILFYSKSDNYLFNKTYIENKDFLQLLTKNEVQNAFKKFSF 327

Query: 176 -----------------------EDVQMRSDW----LIPICSGSERLRNK---DGEKLHP 205
                                  ED    + W     I I S   R+      D E    
Sbjct: 328 PQEKVDDFLTFINHENRGEKYPLEDTWNSNKWDKLNSIAIDSSVSRVDETIAIDDENF-K 386

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            QKPE+L+ RIL  ST   D++LD F GSGT+ AVA K++R +IGIE + DYI+  TK 
Sbjct: 387 GQKPESLIQRILEVSTNENDLVLDFFAGSGTTCAVAHKMKRRYIGIE-QMDYIETITKE 444


>gi|307701460|ref|ZP_07638479.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
 gi|307613370|gb|EFN92620.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
          Length = 348

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 131/317 (41%), Gaps = 80/317 (25%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNL---------------------------- 51
           ++ +I G+++ VL  L  ++  LI+ DPP+N                             
Sbjct: 33  ENTVIHGDNLPVLRGLADETFQLIYIDPPFNTGKVQSRVTMRTRQVREPGAAGGAESADS 92

Query: 52  ----QLNGQLYRPDHSLVDAVTDSWD----KFSSFEAY--------DAFTRAW-LLACR- 93
                  G   + D +   A ++S      K  S+E          D F   W  LA R 
Sbjct: 93  DGSPASRGASRKSDAAPSTAGSNSGSRVGFKGQSYETIRGQVTSYDDEFADYWGFLAPRL 152

Query: 94  ----RVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMPNFRGRRFQN 147
               RVLKP+GTL++   Y  +     +L  L      LN+I+W  +        RR+  
Sbjct: 153 EEAWRVLKPSGTLYLHLDYREVHYAKVLLDALFGRECFLNEIIW--AYDYGARTKRRWPA 210

Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP-ICSGSERLRNK-------- 198
            H+ ++     PK   Y F+ +++         R  ++ P + +  +  R K        
Sbjct: 211 KHDNILVYVKDPKQ--YYFDSESVD--------REPYMAPGLVTAEKAARGKLPTDVWWH 260

Query: 199 ------DGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
                   EK  + TQKPE +L RI+ +S++PGD +LD F GSGT+GAVA K+ R F+ +
Sbjct: 261 TIVSPTGKEKTGYATQKPEGILRRIVAASSRPGDWVLDFFAGSGTTGAVAGKMGRHFVLV 320

Query: 252 EMKQDYIDIATKRIASV 268
           +     I +   R A+ 
Sbjct: 321 DENPQAIAVMRARFAAA 337


>gi|198284865|ref|YP_002221186.1| DNA methylase N-4/N-6 domain-containing protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218665780|ref|YP_002427548.1| type III restriction-modification system, Mod subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198249386|gb|ACH84979.1| DNA methylase N-4/N-6 domain protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218517993|gb|ACK78579.1| type III restriction-modification system, Mod subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 751

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 145/324 (44%), Gaps = 87/324 (26%)

Query: 19  WKDKIIKGNSISVLEKLP----------AKSVDLIFADPPYNL--------QLNGQLYRP 60
           W +K+I G++  +L  L           A  + LI+ DPP+++        ++ G+ +  
Sbjct: 92  WTNKLIWGDNKLILSSLKSGALRRQIEDAGGLKLIYIDPPFDVGADFSMDVEIGGETFHK 151

Query: 61  DHSLVD--AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
           + +L++  A  D+W + +  +++ +     L+  R ++  +G+++V    H  +R+ +++
Sbjct: 152 EANLLEQIAYRDTWGRGA--DSFISMIYERLILMRDLMAEDGSIYV----HCDWRLASLV 205

Query: 119 QNLNFWILNDIVWRK--SNPMPNFRG-------------RRFQNAHETLIWASPSPKAKG 163
           +     I  D V+ K   N  P FR              + +   H T+++ S   K   
Sbjct: 206 R-----IALDEVFGKGGDNEAPGFRNEIIWYFSQGGKGVKHWARKHNTILYYS---KTDS 257

Query: 164 YTFNYDAL-----------KAANEDVQMRSD-----WLIPICSGSERLRNK--DGEKL-- 203
             FN DA+           K  N   +M  D     ++    +G ++L     D  KL  
Sbjct: 258 PIFNQDAVRLPFTPHKQDEKGENYGGRMGVDEDGRRYVEKWGTGKKKLYRYYLDEGKLPE 317

Query: 204 ------------------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
                             +PTQKPEALL RI+ +S+K GD++ D F GSGT+ AVA+KL 
Sbjct: 318 DVWTDIQSIQSAATERMDYPTQKPEALLERIIKASSKEGDLVADFFVGSGTTAAVAEKLG 377

Query: 246 RSFIGIEMKQDYIDIATKRIASVQ 269
           R +I  ++ +  I    KR+  VQ
Sbjct: 378 RKWIATDLGKFGIHTTRKRLIGVQ 401


>gi|92116190|ref|YP_575919.1| DNA methylase N-4/N-6 [Nitrobacter hamburgensis X14]
 gi|91799084|gb|ABE61459.1| DNA methylase N-4/N-6 [Nitrobacter hamburgensis X14]
          Length = 215

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 108/258 (41%), Gaps = 57/258 (22%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + ++ I +G+ I V++ +P++SVD I  DPPY ++      R   S+++     W + ++
Sbjct: 7   QLRNSIQRGDCIEVMQAIPSRSVDFILTDPPYLVRYKC---RDGRSIMNDDNAEWLEPAA 63

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E Y            RVL  +        +    R     ++  F I+  IV+RK    
Sbjct: 64  HEMY------------RVLNRDSLCVSFYGWTQTDRFIAAWRSAGFRIVGHIVFRKRYA- 110

Query: 138 PNFRGRRFQN-AHET---LIWASPS----PKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
                +RF +  HE+   L    P+    P A    F Y                     
Sbjct: 111 ---SAKRFVSYTHESAYVLAKGRPALPEHPPADVIDFPYS-------------------- 147

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
                     G +LHPTQKP   L  ++ +    G ++LDPF GSG++   A++    ++
Sbjct: 148 ----------GNRLHPTQKPVMALMPLITAFCPEGGLVLDPFCGSGSTLVAARQAGCDYL 197

Query: 250 GIEMKQDYIDIATKRIAS 267
           GIE+   Y  IA +R+A+
Sbjct: 198 GIELDHRYHRIAARRLAA 215


>gi|194435302|ref|ZP_03067516.1| DNA methyltransferase [Shigella dysenteriae 1012]
 gi|194416451|gb|EDX32606.1| DNA methyltransferase [Shigella dysenteriae 1012]
          Length = 287

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 101/242 (41%), Gaps = 53/242 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPY---LVGFRDRQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R  +  +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DY 257
            Y
Sbjct: 196 QY 197


>gi|293402433|ref|ZP_06646569.1| DNA (cytosine-5-)-methyltransferase [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291304096|gb|EFE45349.1| DNA (cytosine-5-)-methyltransferase [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 318

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 75/324 (23%), Positives = 124/324 (38%), Gaps = 93/324 (28%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW-DKFSSFE 79
           DKI  G+S+ VL+ LP   +D     PPY            ++L D  TD    + ++ E
Sbjct: 6   DKIYCGDSLQVLQTLPDNCLDCCVTSPPY------------YALRDYGTDGQIGREATPE 53

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWV----------------------------IGSYHNI 111
            Y +   A     +RVL P GT W+                            +   H  
Sbjct: 54  EYVSRITAVFHEVKRVLTPEGTCWLNIADTYCGTGSKADHQDPKYPKGRNGQQVAVNHRA 113

Query: 112 ------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
                       + +   L+   +++ + I+W K NPMP     R    +E +   +   
Sbjct: 114 PGCKPKDLIGIPWLVALALRGDGWYLRSSIIWHKGNPMPESTRDRPTRCYEYVFLLT--- 170

Query: 160 KAKGYTFNYDALK---AANEDVQMRSD--------WLIPICSGSERL---RNKDG---EK 202
           K+K Y +++ A+    A    V+++S           +P  +  +++   R K     E 
Sbjct: 171 KSKKYYYDWQAVAEPIAPTTAVRLKSGVGKGNKYAATVPGQNQPQKINRPRRKGAYTDEM 230

Query: 203 LHPTQK--------------------PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           + P +                     P  L    +++    G I+LDPF GSGT+ A AK
Sbjct: 231 ISPVRSRRNVWQINTTSYRGGHFAAFPPKLAETCILAGCPVGGIVLDPFLGSGTTAAAAK 290

Query: 243 KLRRSFIGIEMKQDYIDIATKRIA 266
            L R +IGIE+  +Y  +A +RI 
Sbjct: 291 SLSRRYIGIEINPEYCTLAKQRIG 314


>gi|253991419|ref|YP_003042775.1| hypothetical protein PAU_03946 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782869|emb|CAQ86034.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 417

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 124/273 (45%), Gaps = 58/273 (21%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY--RPDHSLVDAVTDSWDKFSSFEA 80
           +  G+ +++ + + + +VD++FADPP+NL    +LY  + D +L +            E 
Sbjct: 118 LYHGDCLNISKVIQSDTVDMVFADPPFNLD---KLYPSKMDDNLKE------------EE 162

Query: 81  YDAFTRAWLLACRRVLKPNGT--LWVIGSYHNIFRIGTMLQ---NLNFWILNDIVWRKSN 135
           Y  +T  WL  C R+LKP G   LW +  +++  +I + L    N   WI  D+     N
Sbjct: 163 YIKWTHRWLDECIRILKPGGAFFLWNLPVWNS--KIASFLHGRLNFKHWIAVDM----KN 216

Query: 136 PMPNFRGRRFQNAHETLIW----------------ASPSPKAKGYTFNYDALKAANE--D 177
            MP  +GR +  +H +L++                    PK  G   +Y   K+      
Sbjct: 217 NMP-IQGRLYP-SHYSLLYFIKGEKANTFEPDRLPVQTCPKCFGDLKDYGGYKSKMNPLG 274

Query: 178 VQMRSDW--LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
           + +   W  + P+     + RN   E          +L R++  STK GD+I DPF GSG
Sbjct: 275 INLTDVWYDIPPVRHKKYKKRNGANEL------SIKVLDRVIEMSTKEGDLIFDPFGGSG 328

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           T+  +A+   R +IG E+  D  DI  +R  ++
Sbjct: 329 TTYVIAEIKNRKWIGSEI--DNCDIIKERFDNI 359


>gi|315586305|gb|ADU40686.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori 35A]
          Length = 369

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 120/285 (42%), Gaps = 56/285 (19%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N I    ++I   +S+  L+KLP   +D++   PPYN  +N            A  D+  
Sbjct: 116 NEIQSCLNQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGIN----------YSATQDA-- 163

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWV---------IGSYHNI--FRIGTMLQNLN 122
             + ++ Y     A    C RVLK  G + V         I ++H I  F I   L    
Sbjct: 164 --NLWQEYFNTLFAIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISKFFIDEGL---- 217

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETL-IWASPSPKAKGYTFNYDALKAAN------ 175
            W   +I+W K+N         +   + T   W SP+     Y++ +  +   N      
Sbjct: 218 IW-KGEILWEKNN---------YNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNNLKKEG 267

Query: 176 --EDVQMRSDWLIPICSGS-----ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
             +++ +  D       G      ER   + G   H    PE L+ R L   +   DIIL
Sbjct: 268 DKDNIDITDDEFKKWVYGKWNFAPERNMKQYG---HDAMFPEELVKRCLKLFSYQNDIIL 324

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           DPF G+GT+  VAK+L R FIGI++ + Y ++A  R+  V  L N
Sbjct: 325 DPFNGAGTTTKVAKQLGRRFIGIDISEKYCEVARARLKEVTNLFN 369


>gi|254183949|ref|ZP_04890540.1| DNA methylase [Burkholderia pseudomallei 1655]
 gi|184214481|gb|EDU11524.1| DNA methylase [Burkholderia pseudomallei 1655]
          Length = 267

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 111/255 (43%), Gaps = 36/255 (14%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYN---LQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           D++   +++++   LP  S+D++F DPPY+   L  + +   P    ++  +D+   ++ 
Sbjct: 30  DRLHAMDALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSTKYIN--SDTKTVYTD 87

Query: 78  FE-------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
           FE       A+  +  AWL  CRR LKP G L     +  +  +  ++Q     +    V
Sbjct: 88  FESDNMDQRAWAFWCHAWLSECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILRGIAV 147

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W K+      R   F    E ++WAS               + A  D ++    + P   
Sbjct: 148 WDKTPGRTRPRRGGFAQQAEFVVWAS---------------RGAMRDCEVYLPGVFPC-- 190

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
              RL      K H T+KP   ++R +V     G ++ D F GSGT  A A++    +IG
Sbjct: 191 ---RL---PLPKQHVTEKPLD-IAREVVRLVPAGGVVCDLFAGSGTFLAAAREAGLHWIG 243

Query: 251 IEMKQDYIDIATKRI 265
            E    Y++IA  R+
Sbjct: 244 CESNVYYVNIAHSRL 258


>gi|167743449|ref|ZP_02416223.1| DNA methylase [Burkholderia pseudomallei 14]
 gi|167907411|ref|ZP_02494616.1| DNA methylase [Burkholderia pseudomallei NCTC 13177]
          Length = 87

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/76 (42%), Positives = 50/76 (65%), Gaps = 1/76 (1%)

Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           RL  +  E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     + RR F+G E
Sbjct: 3   RLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQRRGFVGYE 62

Query: 253 MKQDYIDIATKRIASV 268
           + + Y  IA +R+AS+
Sbjct: 63  INESYCAIARERVASL 78


>gi|254193586|ref|ZP_04900019.1| DNA methylase [Burkholderia pseudomallei S13]
 gi|169650338|gb|EDS83031.1| DNA methylase [Burkholderia pseudomallei S13]
          Length = 286

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 109/255 (42%), Gaps = 36/255 (14%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYN---LQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           D++   +++++   LP  S+D++F DPPY+   L  + +   P    ++  +D+   +  
Sbjct: 52  DRLHAMDALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSEKYIN--SDTKAAYVD 109

Query: 78  FE-------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
           FE       A+  +  AWL  CRR LKP G L     +  +  +  ++Q     +    V
Sbjct: 110 FESDNMDQRAWAFWCHAWLSECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILRGIAV 169

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W K+      R   F    E ++WAS               + A  D ++    + P   
Sbjct: 170 WDKTPGRTRPRRGGFAQQAEFVVWAS---------------RGAMRDCEVYLPGVFPC-- 212

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
              RL      K H T+KP   ++R +V     G ++ D F GSGT    A++    +IG
Sbjct: 213 ---RL---PLPKQHVTEKPLD-IAREVVRLVPAGGVVCDLFAGSGTFLVAAREAGLHWIG 265

Query: 251 IEMKQDYIDIATKRI 265
            E  Q Y  IA +R+
Sbjct: 266 CETNQAYHAIAEQRL 280


>gi|83716835|ref|YP_439534.1| site-specific DNA-methyltransferase [Burkholderia thailandensis
           E264]
 gi|134288786|ref|YP_001111068.1| gp37, DNA methylase [Burkholderia phage phiE202]
 gi|83650660|gb|ABC34724.1| site-specific DNA-methyltransferase XF2313 [Burkholderia
           thailandensis E264]
 gi|134131999|gb|ABO60747.1| gp37, DNA methylase [Burkholderia phage phiE202]
          Length = 258

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 109/255 (42%), Gaps = 36/255 (14%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYN---LQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           D++   +++++   LP  S+D++F DPPY+   L  + +   P    ++  +D+   ++ 
Sbjct: 19  DRLHAMDALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSTKYIN--SDTKTVYTD 76

Query: 78  FE-------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
           FE       A+  +  AWL  CRR LKP G L     +  +  +  ++Q     +    V
Sbjct: 77  FESDNMDQRAWAFWCHAWLTECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILRGVAV 136

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W K+      R   F    E ++WAS               + A  D ++    + P   
Sbjct: 137 WDKTPGRTRPRRGGFAQQAEFVVWAS---------------RGAMRDCEVYLPGVFPC-- 179

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
              RL      K H T+KP   ++R +V     G ++ D F GSGT  A A++    +IG
Sbjct: 180 ---RLPLP---KQHVTEKPLD-IAREVVRLVPAGGVVCDLFAGSGTFLAAAREASLHWIG 232

Query: 251 IEMKQDYIDIATKRI 265
            E    Y  IA  R+
Sbjct: 233 CETNAAYHAIALHRL 247


>gi|307288953|ref|ZP_07568923.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0109]
 gi|306500096|gb|EFM69443.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0109]
          Length = 260

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 115/271 (42%), Gaps = 51/271 (18%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   + +  ++++  KS+D+I  D PY                    + WD    F+ 
Sbjct: 4   NKIYNEDCLEGMKRISDKSIDMILCDLPYG----------------TTDNKWDVIIPFD- 46

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSY----------HNIFR---IGTMLQNLNFWILN 127
                + W     R++K +G + + GS             +FR   I    Q  NF++ N
Sbjct: 47  -----KLWE-QYERIIKDSGAIVLTGSQPFTTDIIMSNRKLFRYEWIWNKNQASNFFMAN 100

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPS---PKAKGYTFNYDALKAANEDVQM---- 180
            +  +    +  F  +      + +   +PS    + +GY   YD  K+ N ++      
Sbjct: 101 KMPLKVHENILVFYKKLPTYNKQMIPRTNPSVAIAQERGYV--YDGAKSDNYNISTVKMS 158

Query: 181 ----RSDWLIPICS-GSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
                 +W  PI      +L+N   E+  HPTQKP AL   ++ + T  G+I+LD   GS
Sbjct: 159 PKGYDKNWKNPISILNINQLKNNSNERCGHPTQKPVALFEHLIKTYTNEGEIVLDNCIGS 218

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           GT+   A    R FIG E +++Y D+A +RI
Sbjct: 219 GTTAVAAINTNRQFIGFEKEKEYFDVAIERI 249


>gi|254197164|ref|ZP_04903587.1| DNA methylase [Burkholderia pseudomallei S13]
 gi|169653906|gb|EDS86599.1| DNA methylase [Burkholderia pseudomallei S13]
          Length = 291

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 109/255 (42%), Gaps = 36/255 (14%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYN---LQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           D++   +++++   LP  S+D++F DPPY+   L  + +   P    ++  +D+   ++ 
Sbjct: 52  DRLHAMDALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSTKYIN--SDTKTVYTD 109

Query: 78  FE-------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
           FE       A+  +  AWL  CRR LKP G L     +  +  +  ++Q     +    V
Sbjct: 110 FESDNMDQRAWAFWCHAWLTECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILRGVAV 169

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W K+      R   F    E ++WAS               + A  D ++    + P   
Sbjct: 170 WDKTPGRTRPRRGGFAQQAEFVVWAS---------------RGAMRDCEVYLPGVFPC-- 212

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
              RL      K H T+KP   ++R +V     G ++ D F GSGT  A A++    +IG
Sbjct: 213 ---RL---PLPKQHVTEKPLD-IAREVVRLVPAGGVVCDLFAGSGTFLAAAREASLHWIG 265

Query: 251 IEMKQDYIDIATKRI 265
            E    Y  IA  R+
Sbjct: 266 CETNAAYHAIALHRL 280


>gi|134288704|ref|YP_001111190.1| gp40, DNA methylase [Burkholderia phage phiE12-2]
 gi|134132089|gb|ABO60764.1| gp40, DNA methylase [Burkholderia phage phiE12-2]
          Length = 291

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 109/255 (42%), Gaps = 36/255 (14%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYN---LQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           D++   +++++   LP  S+D++F DPPY+   L  + +   P    ++  +D+   ++ 
Sbjct: 52  DRLHAMDALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSTKYIN--SDTKTVYTD 109

Query: 78  FE-------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
           FE       A+  +  AWL  CRR LKP G L     +  +  +  ++Q     +    V
Sbjct: 110 FESDNMDQRAWAFWCHAWLTECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILRGVAV 169

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W K+      R   F    E ++WAS               + A  D ++    + P   
Sbjct: 170 WDKTPGRTRPRRGGFAQQAEFVVWAS---------------RGAMRDCEVYLPGVFPC-- 212

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
              RL      K H T+KP   ++R +V     G ++ D F GSGT  A A++    +IG
Sbjct: 213 ---RL---PLPKQHVTEKPLD-IAREVVRLVPAGGVVCDLFAGSGTFLAAAREASLHWIG 265

Query: 251 IEMKQDYIDIATKRI 265
            E    Y  IA  R+
Sbjct: 266 CETNAAYHAIALHRL 280


>gi|317179291|dbj|BAJ57079.1| DNA methylase [Helicobacter pylori F30]
          Length = 369

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 119/285 (41%), Gaps = 56/285 (19%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N I    ++I   +S+  L+KLP   +D++   PPYN  +N            A  D+  
Sbjct: 116 NEIQSCLNQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGIN----------YSATQDT-- 163

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWV---------IGSYHNI--FRIGTMLQNLN 122
             + ++ Y     A    C RVLK  G + V         I ++H I  F I   L    
Sbjct: 164 --NLWQEYFNTLFAIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISKFFIDEGL---- 217

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETL-IWASPSPKAKGYTFNYDALKAAN------ 175
            W   +I+W K+N         +   + T   W SP+     Y++ +  +   N      
Sbjct: 218 IW-KGEILWEKNN---------YNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNNLKKEG 267

Query: 176 --EDVQMRSDWLIPICSGS-----ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
             + + +  D       G      ER   + G   H    PE L+ R L   +   DIIL
Sbjct: 268 DKDSIDITDDEFKKWVYGKWNFAPERNMKQYG---HDAMFPEELVKRCLKLFSYQNDIIL 324

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           DPF G+GT+  VAK+L R FIGI++ + Y ++A  R+  V  L N
Sbjct: 325 DPFNGAGTTTKVAKQLGRRFIGIDISEKYCEVARARLKEVTNLFN 369


>gi|323485814|ref|ZP_08091149.1| DNA methylase [Clostridium symbiosum WAL-14163]
 gi|323400802|gb|EGA93165.1| DNA methylase [Clostridium symbiosum WAL-14163]
          Length = 250

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 108/255 (42%), Gaps = 45/255 (17%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS-----LVDAVTDSWDKFSS 77
           I   + +  L  +P  S+DLI  DPPY       L +  H+     L   +    ++   
Sbjct: 20  IYHQDCLEGLRAIPDASIDLILTDPPY-------LIKDTHAGGRTRLARTLQPINNELRD 72

Query: 78  FEAYDAFTRAWLLACRRVLKP-NGTLWV----IGSYHNIFRIGTMLQNLNFWILNDIVWR 132
                    A L    RVLK  N  +W     I  Y N F       + +F I   I W 
Sbjct: 73  NGLVGGLDPAVLPELVRVLKTINLYIWCNKAQIPDYLNYF---VRELDCSFDI---ITWV 126

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT--FNYDALKAANEDVQMRSDWLIPICS 190
           K+N  P F  +   +    L +     +  GY    +Y+  K A         +  P   
Sbjct: 127 KTNSPPTFHNKYLSDKEYCLYF-----RKGGYCQPTSYETAKTA---------YFQP--- 169

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
            +  L  K  E  HPT KP  ++  ++ +S+KPGDI+LDPF GSGT+     +L R ++G
Sbjct: 170 -TNVLDKK--EYPHPTIKPLNIVKTLIGNSSKPGDIVLDPFLGSGTTAVACTELGRQYLG 226

Query: 251 IEMKQDYIDIATKRI 265
            E+  +Y ++A +RI
Sbjct: 227 YELNGEYYEVAQRRI 241


>gi|317177128|dbj|BAJ54917.1| DNA methylase [Helicobacter pylori F16]
          Length = 369

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 120/285 (42%), Gaps = 56/285 (19%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N I    ++I   +S+  L+KLP   +D++   PPYN  +N   Y          T+ W 
Sbjct: 116 NEIQSCLNQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGIN---YSATQD-----TNLWQ 167

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWV---------IGSYHNI--FRIGTMLQNLN 122
           ++  F    A  +     C RVLK  G + V         I ++H I  F I   L    
Sbjct: 168 EY--FNTLFAIFKE----CIRVLKSGGRIIVNIQPMFSDCIPTHHFISKFFIDEGL---- 217

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETL-IWASPSPKAKGYTFNYDALKAAN------ 175
            W   +I+W K+N         +   + T   W SP+     Y++ +  +   N      
Sbjct: 218 IW-KGEILWEKNN---------YNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNNLKKEG 267

Query: 176 --EDVQMRSDWLIPICSGS-----ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
             + + +  D       G      ER   + G   H    PE L+ R L   +   DIIL
Sbjct: 268 DKDSIDITDDEFKKWVYGKWNFAPERNMKQYG---HDAMFPEELVKRCLKLFSYQNDIIL 324

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           DPF G+GT+  VAK+L R FIGI++ + Y ++A  R+  V  L N
Sbjct: 325 DPFNGAGTTTKVAKQLGRRFIGIDISEKYCEVARARLKEVTNLFN 369


>gi|3687316|emb|CAA05163.1| methylase [Lactococcus lactis]
          Length = 296

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 122/294 (41%), Gaps = 48/294 (16%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ--LYRPDHSLVDAVTDSWDKFSS- 77
           D I   NSI  ++K+  +S+ LI +D PY +       L+   +S +   + +  K  S 
Sbjct: 4   DTIYNENSIDSIKKIETESIHLILSDIPYGISFADWDILHENTNSALGGSSPAQHKTGSG 63

Query: 78  -----------FEA-------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
                       EA       Y  +  +W     RVLKP  + ++        R    L+
Sbjct: 64  FKMRGKPINGWSEADRKIPLEYQNWVESWAKEWFRVLKPGSSCFIFAGRRYAHRAIVGLE 123

Query: 120 NLNFWILNDIVWRKSNP------MPNFRGRR--FQNAH--------------ETLIWASP 157
           N  F   + I W +S        +     RR  F+NA               E ++W + 
Sbjct: 124 NSGFTFRDMIGWNRSKATLKAQRISKVYERRNDFENAEKLSEWRVGNLRPVFEPILWFT- 182

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR--NKDGEK-LHPTQKPEALLS 214
            P  +G T   + LK       +   W      G   +   N   ++ LHPTQKP  L+ 
Sbjct: 183 KPYKQGGTIADNMLKHGVGAYNLEK-WQTFSEKGDNYIEIPNLSSDRGLHPTQKPLVLMK 241

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            ++  +T+   I+LDPF GSGT+   AK+L R ++G E+ +DY + +  R+ ++
Sbjct: 242 ALIELTTQENQIVLDPFSGSGTTLVAAKELNRHYLGFEIDKDYYNTSLNRLNTL 295


>gi|150021358|ref|YP_001306712.1| DNA methylase N-4/N-6 domain-containing protein [Thermosipho
           melanesiensis BI429]
 gi|149793879|gb|ABR31327.1| DNA methylase N-4/N-6 domain protein [Thermosipho melanesiensis
           BI429]
          Length = 255

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 107/243 (44%), Gaps = 27/243 (11%)

Query: 34  KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
           ++P  S+DLI   PPYN+ +      P +S  D +T        ++ Y  +T  WL    
Sbjct: 21  RIPENSIDLIVTSPPYNVGI------PYNSHNDKIT--------YKDYLIWTEKWLTKAF 66

Query: 94  RVLKPNGTLWV-------IGSYHNIFR-IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
           ++ KP+G + +        G   +++  I  + + + +   + I+W + N         +
Sbjct: 67  QLSKPDGRMCLNIPLDKNKGGQQSVYADIVYLAKKIGWKYHSTIIWNEGNISRRTAWGSW 126

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS--DWLIPICSGSERLRNKDGEKL 203
            +A    + A        Y   +   K    D+      +W   + + S   + K G   
Sbjct: 127 LSASAPYVIAPVETIVILYKETWKKQKRGKSDILREEFIEWTNGLWTFSGESKKKIG--- 183

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP   P  L  R +   +  GD+ILDPF GSGT+   A +L+R  IG+E+ + Y ++A K
Sbjct: 184 HPAPFPFELPKRCIKLFSYVGDVILDPFLGSGTTAIAAFRLKRKVIGVEIDKKYFELAIK 243

Query: 264 RIA 266
           RI+
Sbjct: 244 RIS 246


>gi|254454493|ref|ZP_05067930.1| DNA methylase N-4/N-6 [Octadecabacter antarcticus 238]
 gi|198268899|gb|EDY93169.1| DNA methylase N-4/N-6 [Octadecabacter antarcticus 238]
          Length = 425

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 103/225 (45%), Gaps = 12/225 (5%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99
           VD  F DPPYN++++G           A+        + +A+  F    L  C  V +  
Sbjct: 195 VDAAFLDPPYNVKISGHANAKGRHREFAMASGE---MTQQAFVQFLEETLGPCAAVSRSG 251

Query: 100 GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
              +V   + +I  +      +    LN  VW KSN      G  +++ HE +       
Sbjct: 252 AVHFVCMDWRHIDELSQAGSTVYDSRLNICVWNKSNA---GMGSLYRSKHELIFVYRVG- 307

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVS 219
            A+ +  N +  K       + +   +   +GS   R++D   LHPT KP A+++  +  
Sbjct: 308 -AEQHLNNVELGKHGRNRTNVWNYASVNSLAGS---RSED-LALHPTVKPTAMVADAIQD 362

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            TK GDI+LD F GSGT+   ++++ R F GIE+   Y+D+A +R
Sbjct: 363 VTKRGDIVLDIFLGSGTTLIASERVGRKFRGIELDPGYVDVAIER 407


>gi|188527117|ref|YP_001909804.1| DNA methylase [Helicobacter pylori Shi470]
 gi|308182486|ref|YP_003926613.1| DNA methylase [Helicobacter pylori PeCan4]
 gi|188143357|gb|ACD47774.1| DNA methylase [Helicobacter pylori Shi470]
 gi|308063174|gb|ADO05061.1| DNA methylase [Helicobacter pylori Sat464]
 gi|308064671|gb|ADO06563.1| DNA methylase [Helicobacter pylori PeCan4]
          Length = 369

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 119/285 (41%), Gaps = 56/285 (19%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N I    ++I   +S+  L+KLP   +D++   PPYN  +N            A  D+  
Sbjct: 116 NEIQSCLNQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGIN----------YSATQDA-- 163

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWV---------IGSYHNI--FRIGTMLQNLN 122
             + ++ Y     A    C RVLK  G + V         I ++H I  F I   L    
Sbjct: 164 --NLWQEYFNTLFAIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISKFFIDEGL---- 217

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETL-IWASPSPKAKGYTFNYDALKAAN------ 175
            W   +I+W K+N         +   + T   W SP+     Y++ +  +   N      
Sbjct: 218 IW-KGEILWEKNN---------YNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNNLKKEG 267

Query: 176 --EDVQMRSDWLIPICSGS-----ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
             + + +  D       G      ER   + G   H    PE L+ R L   +   DIIL
Sbjct: 268 DKDSIDITDDEFKKWVYGKWNFAPERNMKQYG---HDAMFPEELVKRCLKLFSYQNDIIL 324

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           DPF G+GT+  VAK+L R FIGI++ + Y ++A  R+  V  L N
Sbjct: 325 DPFNGAGTTTKVAKQLGRRFIGIDISEKYCEVARARLKEVTNLFN 369


>gi|207091956|ref|ZP_03239743.1| DNA methylase [Helicobacter pylori HPKX_438_AG0C1]
          Length = 257

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 117/276 (42%), Gaps = 52/276 (18%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I   +S+  L+KLP   +D++   PPYN  +N           +A  D+    + ++ 
Sbjct: 8   NQIYCKDSLEFLKKLPNNCIDIVLTSPPYNFGIN----------YNATQDT----NLWQE 53

Query: 81  YDAFTRAWLLACRRVLKPNGTLWV---------IGSYHNIFRIGTMLQNLNFWILNDIVW 131
           Y     A    C RVLK  G + V         I ++H I +    +     W   +I+W
Sbjct: 54  YFNTLFAIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISKF--FIDEGLIW-KGEILW 110

Query: 132 RKSNPMPNFRGRRFQNAHETL-IWASPSPKAKGYTFNYDALKAAN--------EDVQMRS 182
            K+N         +   + T   W SP+     Y++ +  +   N        + + +  
Sbjct: 111 EKNN---------YNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNNLKKEGDKDSIDITD 161

Query: 183 DWLIPICSGS-----ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           D       G      ER   + G   H    PE L+ R L   +   DI+LDPF G+GT+
Sbjct: 162 DEFKKWVYGKWNFAPERNMKQYG---HDAMFPEELVKRCLKLFSYQNDIVLDPFNGAGTT 218

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
             VAK+L R FIGI++ + Y ++A +R+     L N
Sbjct: 219 TKVAKQLGRRFIGIDISEKYCEVAKERLKETTNLFN 254


>gi|17233429|ref|NP_490548.1| putative methylase [Salmonella typhimurium LT2]
 gi|167995157|ref|ZP_02576247.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261888742|ref|YP_003264431.1| putative methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|305696893|ref|YP_003864208.1| putative adenine-specific DNA methylase [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16445250|gb|AAL23468.1| putative adenine-specific DNA methylase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|205327122|gb|EDZ13886.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261857330|emb|CBA11403.1| putative adenine-specific DNA methylase [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|267990094|gb|ACY86491.1| putative adenine-specific DNA methylase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|304376195|dbj|BAJ15357.1| putative adenine-specific DNA methylase [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312915779|dbj|BAJ39752.1| putative methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|323132992|gb|ADX20421.1| putative adenine-specific DNA methylase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332991469|gb|AEF10451.1| putative adenine-specific DNA methylase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 226

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 105/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I GN + ++   P ++VD I  DPPY   L G   R   S+    TD W + +  + Y
Sbjct: 3   RLILGNCVDIMSGFPERAVDFILTDPPY---LVGFRDRSGRSIAGDRTDEWLQPACNQMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  L     ++ + R     ++  F ++  +V+ K+ +    +
Sbjct: 60  ------------RVLKKDALLVSFYGWNRVDRFMAAWKSAGFSVVGHLVFTKNYSSKSAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ ++                            
Sbjct: 108 VGYRHECAYVLAKGRPALPQNPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T    I+LDPF GS ++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHTNAIVLDPFAGSASTCVAALQAGRRYIGIELME 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+ +VQ
Sbjct: 196 QYHKAGIERLTAVQ 209


>gi|332673157|gb|AEE69974.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori 83]
          Length = 369

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 118/285 (41%), Gaps = 56/285 (19%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N I    D+I   +S+  L+ LP   +D++   PPYN  +N            A  D+  
Sbjct: 116 NEIQSCLDQIYCEDSLEFLKNLPNNCIDIVLTSPPYNFGIN----------YSATQDA-- 163

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWV---------IGSYHNI--FRIGTMLQNLN 122
             + ++ Y     A    C RVLK  G + V         I ++H I  F I   L    
Sbjct: 164 --NLWQEYFNTLFAIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISKFFIDEGL---- 217

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETL-IWASPSPKAKGYTFNYDALKAAN------ 175
            W   +I+W K+N         +   + T   W SP+     Y++ +  +   N      
Sbjct: 218 IW-KGEILWEKNN---------YNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNNLKKEG 267

Query: 176 --EDVQMRSDWLIPICSGS-----ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
             + + +  D       G      ER   + G   H    PE L+ R L   +   DIIL
Sbjct: 268 DKDSIDITDDEFKKWVYGKWNFAPERNMKQYG---HDAMFPEELVKRCLKLFSYQNDIIL 324

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           DPF G+GT+  VAK+L R FIGI++ + Y ++A  R+  V  L N
Sbjct: 325 DPFNGAGTTTKVAKQLGRRFIGIDISEKYCEVARARLKEVTNLFN 369


>gi|298346582|ref|YP_003719269.1| adenine-specific DNA-methyltransferase [Mobiluncus curtisii ATCC
           43063]
 gi|298236643|gb|ADI67775.1| site-specific DNA-methyltransferase (adenine-specific) [Mobiluncus
           curtisii ATCC 43063]
          Length = 432

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 126/265 (47%), Gaps = 24/265 (9%)

Query: 20  KDKIIKGNSISVLEKLPAK---SVDLIFADPPYN-----LQLNGQLYRPDHSLVDAVTDS 71
           +++I  G ++ V+  L  +   SVD I+ DPP+N     +Q     +R D      V   
Sbjct: 47  ENRIYVGENLQVMSGLLPQYEGSVDCIYIDPPFNSGTDYVQRIQTHHRGDSKRTITVKQY 106

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDI 129
            D++ + + Y       L   RR L P GT+++   +H+   +  ++  +     ++N+I
Sbjct: 107 GDRWQTAD-YLQNLYERLTVLRRFLSPTGTIFLHCDWHSSATLRLIMDEVFGGRNLINEI 165

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV--QMRSDWLIP 187
           VW  ++   + R   F + H+T+++ + +   + Y F+ DA++ A        R +   P
Sbjct: 166 VWAYASGGGSRRA--FGHKHDTILFYARN--RRRYYFDPDAVRVAYNAAIAPKRRELFNP 221

Query: 188 -------ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
                  +   S    + D    +PTQKP  ++ R + ++  PG +++D F GSG++   
Sbjct: 222 QGMVAPDVWQISRPPNHSDTWVGYPTQKPLEVMQRAIAAACPPGGLVMDCFAGSGSTLVA 281

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRI 265
           A +L R F+GIE     + +A +R+
Sbjct: 282 AAQLGRRFLGIERNSLGVHLARRRL 306


>gi|187251377|ref|YP_001875859.1| DNA modification methylase [Elusimicrobium minutum Pei191]
 gi|186971537|gb|ACC98522.1| DNA modification methylase [Elusimicrobium minutum Pei191]
          Length = 222

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 100/243 (41%), Gaps = 43/243 (17%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G+ + V++ +  + VD I  DPPY+           H+  D       KFS    +    
Sbjct: 14  GDCLEVMQTI--ERVDAIITDPPYD--------EKTHNGADK------KFSDIN-FAPLE 56

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
              LLA  + L      WV+ ++ +  ++G          +   +W K   MP   G R 
Sbjct: 57  SPALLA--KTLLGKSRFWVL-AFCSFEQLGQYRDGAGEAWIRAGIWDKITNMPQMTGDR- 112

Query: 146 QNAHETLIWASPSPKAKGYTFNYD-ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
                      P+   +G    ++  +K  N   +          +   R   + G K H
Sbjct: 113 -----------PAQGGEGIAIMHNNGMKKWNGGGK----------AAIYRYLVERGNKQH 151

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PTQKP  L+  ++   T  G ++LDPF GSGT+G    +L R FIGIE+   Y DI+  R
Sbjct: 152 PTQKPLELIEELISLYTNEGQLVLDPFMGSGTTGVACARLNRKFIGIEIDPKYFDISCHR 211

Query: 265 IAS 267
           I +
Sbjct: 212 IEA 214


>gi|109899594|ref|YP_662849.1| DNA methylase N-4/N-6 [Pseudoalteromonas atlantica T6c]
 gi|109701875|gb|ABG41795.1| DNA methylase N-4/N-6 [Pseudoalteromonas atlantica T6c]
          Length = 218

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 110/253 (43%), Gaps = 45/253 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYN----LQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           ++ + +++  L+ LPA SVDL+  DPPY      +  G   R  HS          K SS
Sbjct: 2   RLFQQDAVEWLQSLPANSVDLVITDPPYESLEKHRAKGTTTRLKHS----------KSSS 51

Query: 78  FEAYDAF--TRAWLLACR--RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
            E +  F  TR   L     RVLK N   ++      +F I  + +   F     +VW K
Sbjct: 52  NEWFAIFPNTRFIELVAEIYRVLKHNSHFYLFCDQETMFVIKPLAEAAGFKFWKPLVWDK 111

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
                   G  ++  +E +++             ++  K   +D+ M            +
Sbjct: 112 CAIG---MGYHYRARYEFILF-------------FEKGKRKLQDLSM-----------PD 144

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
            L+ K   + +PT+KP  L+ +++V S+  GD+++DPFFGSG +   A+   R + G ++
Sbjct: 145 VLQEKRVWRGYPTEKPVPLIEKLIVQSSSEGDLVIDPFFGSGATLVAAQNCNREWQGADL 204

Query: 254 KQDYIDIATKRIA 266
                + A KR+ 
Sbjct: 205 SPSAHEHAVKRLG 217


>gi|317012153|gb|ADU82761.1| DNA methylase [Helicobacter pylori Lithuania75]
          Length = 372

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 122/285 (42%), Gaps = 56/285 (19%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N I  + ++I   +S+  L+KLP   +D++   PPYN  +N       ++  DA  D W 
Sbjct: 116 NEIQSYLNQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGINY------NATQDA--DLWQ 167

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWV---------IGSYHNI--FRIGTMLQNLN 122
           ++ +   +  F       C RVLK  G + V         I ++H I  F I   L    
Sbjct: 168 EYFN-TLFSIFKE-----CIRVLKSGGRIIVNIQPMFSDYIPTHHFISKFFIDEGL---- 217

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETL-IWASPSPKAKGYTFNYDALKAANE----- 176
            W   +I+W K+N         +   + T   W SP+     Y++ +  +   N      
Sbjct: 218 IW-KGEILWEKNN---------YNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNNLKKEG 267

Query: 177 ---DVQMRSDWLIPICSGS-----ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
               + +  D       G      ER   + G   H    PE L+ R L   +   DI+L
Sbjct: 268 DKNSIDITDDEFKKWVYGKWNFAPERNMKQYG---HDAMFPEELVKRCLKLFSYQNDIVL 324

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           DPF G+GT+  VAK+L R FIGI++ + Y ++A +R+     L N
Sbjct: 325 DPFNGAGTTTKVAKQLGRRFIGIDISEKYCEVAKERLKETTNLFN 369


>gi|46579511|ref|YP_010319.1| adenine specific DNA methyltransferase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46448926|gb|AAS95578.1| adenine specific DNA methyltransferase, putative [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311233325|gb|ADP86179.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio vulgaris RCH1]
          Length = 247

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 108/259 (41%), Gaps = 40/259 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYN---LQLNGQLYRPDHSLVDAVT---------D 70
           +++G S+++L  LP   VD +  DPPY+   + +  +   P      + T         D
Sbjct: 12  LLQGESLAILRTLPDGFVDTVLTDPPYSSGGVTMAARQADPAQKYQQSNTKRTYPAMLGD 71

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
           + D+ S    +  +   WL  C RV K    + V   +  +  +   LQ   +     + 
Sbjct: 72  NRDQRS----FTLWATLWLSECWRVAKDGARIMVFTDWRQLPSMTDALQAAGWMWRGVVT 127

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W K +  P+     F+   E +I  S     KG                M S    P   
Sbjct: 128 WHKPSARPSLGD--FKRDAEYVITGS-----KGKPI-------------MHSRKCPP--- 164

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           G          K+H T+KP ALL  +L   T PG ++LDPF GSG++G       R ++G
Sbjct: 165 GVYSHSVNTARKIHLTEKPVALLENLL-DITAPGGLVLDPFAGSGSTGVACLNTGRRYLG 223

Query: 251 IEMKQDYIDIATKRIASVQ 269
           IE+ ++Y   A +R+A+ Q
Sbjct: 224 IELSKEYHQRACERLAAHQ 242


>gi|108562739|ref|YP_627055.1| DNA methylase [Helicobacter pylori HPAG1]
 gi|107836512|gb|ABF84381.1| DNA methylase [Helicobacter pylori HPAG1]
          Length = 369

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 120/285 (42%), Gaps = 56/285 (19%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N I    ++I   +S+  L+KLP   +D++   PPYN  +N   Y          T+ W 
Sbjct: 116 NEIQSCLNQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGIN---YNATQD-----TNLWQ 167

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWV---------IGSYHNI--FRIGTMLQNLN 122
           ++  F A  A  +     C RVLK  G + V         I ++H I  F I   L    
Sbjct: 168 EY--FNALFAIFKE----CIRVLKSGGRIIVNIQPMFSDYIPTHHFISKFFIDEGL---- 217

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETL-IWASPSPKAKGYTFNYDALKAAN------ 175
            W   +I+W K+N         +   + T   W SP+     Y++ +  +   N      
Sbjct: 218 IW-KGEILWEKNN---------YNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNSLKKEG 267

Query: 176 --EDVQMRSDWLIPICSGS-----ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
             + + +  D       G      ER   + G   H    PE L+ R L   +   DI+L
Sbjct: 268 DKDSIDITDDEFKKWVYGKWNFAPERNMKQYG---HDAMFPEELVKRCLKLFSYQNDIVL 324

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           DPF G+GT+  VAK+L R FIGI++ + Y + A  R+  V  L N
Sbjct: 325 DPFNGAGTTTKVAKQLGRRFIGIDISEKYCEAARARLKEVTDLFN 369


>gi|317052819|ref|YP_004119585.1| DNA methylase N-4/N-6 domain-containing protein [Pantoea sp. At-9b]
 gi|316953559|gb|ADU73029.1| DNA methylase N-4/N-6 domain protein [Pantoea sp. At-9b]
          Length = 214

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 108/254 (42%), Gaps = 59/254 (23%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + G+S+ V+   P  S+D I  DPPY   L G   R   S+ + V   W   +S + Y
Sbjct: 3   RFMHGDSVQVMGGFPDNSIDFILTDPPY---LVGFKDRSGRSIANDVNSEWVLPASQQMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN---LNFWILNDIVWRKSNPMP 138
                       RVLK N    +  S++   R+   +Q      F ++  +V+ K     
Sbjct: 60  ------------RVLKTNS---LAVSFYGWNRVDIFMQAWKAAGFRVVGHLVFTKPYASK 104

Query: 139 N-FRGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           + F G + ++A+        +  +P P    + +                          
Sbjct: 105 SAFVGYQHESAYVLAKGRPALPRNPLPDVMPWQYT------------------------- 139

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
                  G + HPT+KP ++L  ++ S T+PGD++LDPF GSG++   A +  R +IGIE
Sbjct: 140 -------GNRHHPTEKPVSILRPLIESFTQPGDLVLDPFAGSGSTCVAADQCGRRWIGIE 192

Query: 253 MKQDYIDIATKRIA 266
           + + Y   A +R+ 
Sbjct: 193 LMEQYHTAALRRLG 206


>gi|317181324|dbj|BAJ59108.1| adenine-specific DNA methylase [Helicobacter pylori F57]
          Length = 821

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 62/104 (59%), Gaps = 3/104 (2%)

Query: 168 YDALKAANEDVQMRS---DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
           YD +K A + ++ R+   ++     +  E L   +G KL  T KPEALL RI+  ST+  
Sbjct: 604 YDEIKNAKKVIKTRTIFTEYGTTTEATKEILALFNGTKLFDTPKPEALLKRIIEISTQEN 663

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           D++LD F GSGT+ AVA KL+R +IGIEM + +  +   R+  V
Sbjct: 664 DLVLDFFAGSGTTCAVAHKLKRKYIGIEMGEHFDSVILPRLKKV 707


>gi|293400157|ref|ZP_06644303.1| DNA (cytosine-5-)-methyltransferase [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306557|gb|EFE47800.1| DNA (cytosine-5-)-methyltransferase [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 319

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 123/341 (36%), Gaps = 123/341 (36%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPD--HSLVDAVTDSWDK 74
           D II  +++  L +LP +SV      PPY    +  L+ Q+ R D     +D +T+ + +
Sbjct: 7   DTIINRDALYALRELPEESVHCCVTSPPYYALRDYGLDMQIGREDTPEQYIDRLTEVFRE 66

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWV------IGS----YH------------NIF 112
                             RRVL+ +GTLW+       G+    YH             I 
Sbjct: 67  L-----------------RRVLRSDGTLWLNIADTYCGTGNKGYHADPKNPKGRNGQQIA 109

Query: 113 R------------------IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
           R                  +   L+   +++ +DI+W+K NPMP     R    +E +  
Sbjct: 110 RNNRVSGCKQKDLIGIPWLLAFALRADGWYLRSDIIWQKENPMPESVKDRPTRCYEHIFL 169

Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK------------ 202
            + S K     + YDA   A          L P  +   R     G+K            
Sbjct: 170 LTKSKK-----YFYDAAAIAEP--------LAPTTAARYRTGRSAGQKYADEVPGQGNVQ 216

Query: 203 --------------LHPTQK---------------------PEALLSRILVSSTKPGDII 227
                         L PT +                     P  L    + +    G ++
Sbjct: 217 GLNRARSGSYYDEALMPTMRNRRDVWLINTVPYKGGHFAAFPPKLAETCIKAGCPKGGVV 276

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           LDPFFGSGT+GA AK+L R +IGIE+  +Y  +A  RI   
Sbjct: 277 LDPFFGSGTTGAAAKQLDRHYIGIEINAEYCALARARIGGT 317


>gi|209543775|ref|YP_002276004.1| DNA methylase N-4/N-6 domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531452|gb|ACI51389.1| DNA methylase N-4/N-6 domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 226

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 113/258 (43%), Gaps = 41/258 (15%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
           +  N  +  ++++ I+ G+S+ ++  +P  SVD I  DPPY +   G+  R   +  +A 
Sbjct: 1   MTGNTITATDFRNTILNGDSVDLMRAMPRNSVDFILTDPPYLVNYQGRDGRKVRNDDNA- 59

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
                          + R  +    RVLK  G       ++ I       +   F ++  
Sbjct: 60  --------------RWLRPAVNQMHRVLKWGGLAVSFYGWNKIDLFADAWKAAGFRMVGH 105

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
           IV+RKS                   +AS S   +   + +++     +   MR    +P 
Sbjct: 106 IVFRKS-------------------YASSSGFLR---YEHESAYLLAKGNAMRPHQPVPD 143

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
                   +  G +LHPTQKP A L  ++ +    G ++LDPF GSG+S   A+ L R +
Sbjct: 144 VIDM----SYSGNRLHPTQKPVAALLPLVDTFCPAGGLVLDPFCGSGSSLVAAQHLGREW 199

Query: 249 IGIEMKQDYIDIATKRIA 266
           +G+E+  ++  +AT+R+A
Sbjct: 200 LGMELDAEHAAMATRRLA 217


>gi|326782796|ref|YP_004323194.1| DNA adenine methylase [Prochlorococcus phage P-RSM4]
 gi|310004055|gb|ADO98449.1| DNA adenine methylase [Prochlorococcus phage P-RSM4]
          Length = 317

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 24/172 (13%)

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
           L+   +++  DI+W K NPMP     R   AHE +   S   K K Y ++ +A+K   +D
Sbjct: 139 LRKDGWYLRQDIIWHKPNPMPESVKDRCTKAHEYIFLFS---KNKKYYYDNEAIKEPAKD 195

Query: 178 VQMRSDWLIPICSGSERLRNKDG-EKLHPTQK--------------------PEALLSRI 216
              R        +    L    G  K +PT+                     P  L+   
Sbjct: 196 WGTRDRTKGKYHNKGTGLSPHTGLNKSYPTKNKRSVWSVTNKPYKGTHFAVFPPDLIEPC 255

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +++ +K GD+ILDPF GSGT+  V+K+L R +IG E+ ++Y  +   R+ + 
Sbjct: 256 ILAGSKKGDLILDPFMGSGTTAMVSKQLDRHYIGCELHEEYKSLIDSRLPNT 307


>gi|163816267|ref|ZP_02207634.1| hypothetical protein COPEUT_02455 [Coprococcus eutactus ATCC 27759]
 gi|166032412|ref|ZP_02235241.1| hypothetical protein DORFOR_02115 [Dorea formicigenerans ATCC
           27755]
 gi|167747571|ref|ZP_02419698.1| hypothetical protein ANACAC_02292 [Anaerostipes caccae DSM 14662]
 gi|167760843|ref|ZP_02432970.1| hypothetical protein CLOSCI_03231 [Clostridium scindens ATCC 35704]
 gi|210615450|ref|ZP_03290577.1| hypothetical protein CLONEX_02793 [Clostridium nexile DSM 1787]
 gi|283796271|ref|ZP_06345424.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. M62/1]
 gi|331088100|ref|ZP_08337021.1| DNA methylase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|158448462|gb|EDP25457.1| hypothetical protein COPEUT_02455 [Coprococcus eutactus ATCC 27759]
 gi|166028135|gb|EDR46892.1| hypothetical protein DORFOR_02115 [Dorea formicigenerans ATCC
           27755]
 gi|167652933|gb|EDR97062.1| hypothetical protein ANACAC_02292 [Anaerostipes caccae DSM 14662]
 gi|167661446|gb|EDS05576.1| hypothetical protein CLOSCI_03231 [Clostridium scindens ATCC 35704]
 gi|210150299|gb|EEA81308.1| hypothetical protein CLONEX_02793 [Clostridium nexile DSM 1787]
 gi|291076207|gb|EFE13571.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. M62/1]
 gi|291543122|emb|CBL16232.1| DNA modification methylase [Ruminococcus bromii L2-63]
 gi|330409056|gb|EGG88515.1| DNA methylase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 319

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 123/341 (36%), Gaps = 123/341 (36%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPD--HSLVDAVTDSWDK 74
           D II  +++  L +LP +SV      PPY    +  L+ Q+ R D     +D +T+ + +
Sbjct: 7   DTIINRDALYALRELPEESVHCCVTSPPYYALRDYGLDMQIGREDTPEQYIDRLTEVFRE 66

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWV------IGS----YH------------NIF 112
                             RRVL+ +GTLW+       G+    YH             I 
Sbjct: 67  L-----------------RRVLRSDGTLWLNIADTYCGTGNKGYHADPKNPKGRNGQQIA 109

Query: 113 R------------------IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
           R                  +   L+   +++ +DI+W+K NPMP     R    +E +  
Sbjct: 110 RNNRVSGCKQKDLIGIPWLLAFALRADGWYLRSDIIWQKENPMPESVKDRPTRCYEHIFL 169

Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK------------ 202
            + S K     + YDA   A          L P  +   R     G+K            
Sbjct: 170 LTKSKK-----YFYDAAAIAEP--------LAPTTAARYRTGRSAGQKYADEVPGQGNVQ 216

Query: 203 --------------LHPTQK---------------------PEALLSRILVSSTKPGDII 227
                         L PT +                     P  L    + +    G ++
Sbjct: 217 GLNRARSGSYYDEALMPTMRNRRDVWLINTVPYKGGHFAAFPPKLAETCIKAGCPKGGVV 276

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           LDPFFGSGT+GA AK+L R +IGIE+  +Y  +A  RI   
Sbjct: 277 LDPFFGSGTTGAAAKQLDRHYIGIEINAEYCALARARIGGT 317


>gi|298241762|ref|ZP_06965569.1| DNA methylase N-4/N-6 domain protein [Ktedonobacter racemifer DSM
           44963]
 gi|297554816|gb|EFH88680.1| DNA methylase N-4/N-6 domain protein [Ktedonobacter racemifer DSM
           44963]
          Length = 344

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 130/288 (45%), Gaps = 53/288 (18%)

Query: 19  WKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           W +++I G++  +L  L       V+LI+ DPP+   + G+ +     L  A +D+W+  
Sbjct: 45  WSNRLIWGDNQDILPALLPLFRDQVNLIYIDPPF---MTGRTFGRKEQL--AYSDTWN-- 97

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--------ILN 127
           +  +AY  +    L    ++L P G++++   +     +  ML  +  +          N
Sbjct: 98  NDIDAYLQWLYPILQTLHQLLAPTGSMYLHLDWRTSHYVKVMLDEIFGFNVQGNGPGFKN 157

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD------------------ 169
           +I+W   +       R +   H+T+++ +   K+  Y F+ +                  
Sbjct: 158 EIIWHYQSGGQT--RRYYTRKHDTILFYT---KSGDYCFHKERIGERRGAQKRNHMRQVV 212

Query: 170 --------ALKAANEDVQMRSDWLIP---ICSGSERLRNKDGEKL-HPTQKPEALLSRIL 217
                    +K+A +      D LIP   + S    L  +D E+  + TQKP ALL RIL
Sbjct: 213 GPDGQISWTIKSAGKLYTYNEDTLIPPSDVWSDISHLHQRDPERTGYATQKPAALLERIL 272

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           ++S++  D+++D F GSG +  VA+ L+R +I  +  +  I   ++R+
Sbjct: 273 LASSEEDDLVMDCFCGSGVTPIVAEHLKRRWIACDKSELAITTTSQRL 320


>gi|61806250|ref|YP_214609.1| DNA adenine methylase [Prochlorococcus phage P-SSM4]
 gi|61563794|gb|AAX46849.1| DNA adenine methylase [Prochlorococcus phage P-SSM4]
          Length = 326

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 83/174 (47%), Gaps = 35/174 (20%)

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
           +++  DI+W K NPMP     R   +HE +   S   K K Y ++ +A+K       ++ 
Sbjct: 147 WYLRQDIIWHKPNPMPESVKDRCTKSHEYIFLLS---KNKKYYYDNEAIKEP-----VKQ 198

Query: 183 DW----------------LIP---ICSGSER--------LRNKDGEKLHPTQKPEALLSR 215
           DW                L P   +    +R        + NK  +  H    P  L++ 
Sbjct: 199 DWGTRNRTNGKYHNSGSGLSPHSGLTKSYDRKNKRDVWSITNKPYKGSHFAVFPPDLITP 258

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            +++ ++ GDIILDPF GSGT+  VAK+L R +IG E+ ++Y ++  +R+   Q
Sbjct: 259 CILAGSEKGDIILDPFMGSGTTAMVAKQLGRDYIGCELHEEYGNLIDQRVPVEQ 312


>gi|219849128|ref|YP_002463561.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
           aggregans DSM 9485]
 gi|219543387|gb|ACL25125.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aggregans DSM
           9485]
          Length = 329

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 119/279 (42%), Gaps = 57/279 (20%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+   +L ++P  SV LI   PPYNL   G+ Y       D V        S E Y 
Sbjct: 25  LFSGDVSELLTQVPDNSVALIVTSPPYNL---GKEYE------DRV--------SIEQYL 67

Query: 83  AFTRAWLLACRRVLKPNGTL-WVIGSY---HNIFRIGTM----LQNLNFWILNDIVWRKS 134
                 +    RVL+ +G++ W +G++     ++ +  +     + L   + N I+W+  
Sbjct: 68  KTQAQVIAQLHRVLREDGSICWQVGNFVENGEVYPLDVLYYPIFKELGMRLRNRIIWKFG 127

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR------------- 181
           + +     RRF   +ET++W +   K+  Y FN DA++   +    R             
Sbjct: 128 HGL--HASRRFSGRYETILWFT---KSDRYVFNLDAVRVPAKYPGKRHFKGPNKGKPSGN 182

Query: 182 ------SD-WLIPICSGSERL-------RNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
                 SD W I +    E +        N   + +HP Q P  L+ R +++ T  GD +
Sbjct: 183 PLGKNPSDVWEILVQDWEELVWDIPNVKSNHPEKTVHPCQFPIELVERCVLALTNEGDWV 242

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
            DP+ G G++   A    R  +G E +  Y++IA +RI 
Sbjct: 243 FDPYMGVGSALIAALMHDRRAMGCEKEAAYVEIARQRIV 281


>gi|225375688|ref|ZP_03752909.1| hypothetical protein ROSEINA2194_01313 [Roseburia inulinivorans DSM
           16841]
 gi|257437540|ref|ZP_05613295.1| DNA (cytosine-5-)-methyltransferase [Faecalibacterium prausnitzii
           A2-165]
 gi|225212458|gb|EEG94812.1| hypothetical protein ROSEINA2194_01313 [Roseburia inulinivorans DSM
           16841]
 gi|257199847|gb|EEU98131.1| DNA (cytosine-5-)-methyltransferase [Faecalibacterium prausnitzii
           A2-165]
 gi|295109653|emb|CBL23606.1| DNA modification methylase [Ruminococcus obeum A2-162]
          Length = 293

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 122/308 (39%), Gaps = 82/308 (26%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           D II  +++  L +LP++SV+     PPY    +  L+ Q+ R D               
Sbjct: 4   DVIINRDALYALRELPSESVNCCVTSPPYYGLRDYGLDAQIGRED--------------- 48

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLW--VIGSY-HNIFRIGTMLQNL------------ 121
           + E Y           RRVLK +GT W  +  +Y  +  + G   ++L            
Sbjct: 49  TPEQYIGRLVEVFRELRRVLKDDGTFWLNIADTYCGSGMKAGCKQKDLIGIPWLLAFALR 108

Query: 122 --NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK------------AKGYTFN 167
              +++ +DI+W K NPMP     R    +E +   + S K            A G    
Sbjct: 109 SDGWYLRSDIIWLKENPMPESCRDRPSRCYEHIFLLTKSKKYYYDAAAIAEPIAPGTAAR 168

Query: 168 YDALKAAN----EDV----------QMRS-----DWLIPICSGSERLRNKDGEKL----- 203
           Y   ++A     E+V          Q RS     D L+P        RNK    L     
Sbjct: 169 YRQGRSAGHKYAEEVPGQGKVQGINQPRSGSYYDDALMPT------TRNKRDVWLINTVP 222

Query: 204 ----HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
               H    P  L    +++    G +++DPFFGSGT+G  A+ L R +IGIE+  +Y  
Sbjct: 223 YKGGHFAAYPPKLAETCILAGCPKGGVVIDPFFGSGTTGLAAQSLDRRYIGIELNAEYCA 282

Query: 260 IATKRIAS 267
           +A  RI  
Sbjct: 283 LAGARIGG 290


>gi|288931950|ref|YP_003436010.1| DNA methylase N-4/N-6 domain protein [Ferroglobus placidus DSM
           10642]
 gi|288894198|gb|ADC65735.1| DNA methylase N-4/N-6 domain protein [Ferroglobus placidus DSM
           10642]
          Length = 303

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 114/275 (41%), Gaps = 54/275 (19%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           E  D II G++  VL+ LP   + L+   PPYN+   G+ Y  D +L +           
Sbjct: 50  ELLDNIILGDAREVLKNLPKNCIHLMVTSPPYNV---GKEYDEDLTLGE----------- 95

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG------------TMLQNLNFWI 125
              Y  F    +    RVL     +W      N+  +G               + + F  
Sbjct: 96  ---YLDFIEEVMKEVYRVL-----VWGGRVCFNVANLGRKPYIPLHAYLIERFEKIGFLF 147

Query: 126 LNDIVWRKSNPMPNFR----------GRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
             +I+W K + +                  ++ HE +I  S     KG   ++   K   
Sbjct: 148 RGEIIWDKGDAVSGASTAWGTWQSAVNPVLRDQHEYIIVLS-----KG---SFKREKGNK 199

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
           ED   R ++L        +   +  +++ HP   PE L  R +   T  GD++LDPF GS
Sbjct: 200 EDTISREEFL-EFTKSVWKFPPESAKRVGHPAPFPEELPYRCIQLFTFKGDVVLDPFVGS 258

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           GT+   A K  R FIGI++++ Y++IA +RI  ++
Sbjct: 259 GTTCVAALKTGRHFIGIDIEEKYVEIAKRRIKEIK 293


>gi|257440144|ref|ZP_05615899.1| DNA (cytosine-5-)-methyltransferase [Faecalibacterium prausnitzii
           A2-165]
 gi|257197496|gb|EEU95780.1| DNA (cytosine-5-)-methyltransferase [Faecalibacterium prausnitzii
           A2-165]
          Length = 276

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 81/187 (43%), Gaps = 40/187 (21%)

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA------- 170
           L++  +++ NDI+W K NPMP     R    +E +   S   K+K Y F+Y A       
Sbjct: 91  LRDTGWYLRNDIIWMKENPMPESVKDRLSRCYEHIFLFS---KSKKYFFDYKAISEPIAP 147

Query: 171 ---------LKAANEDVQMRSDWLIPICSGSER------------LRNK-DGEKL----- 203
                    +K  N+  +       P      R            LRNK D  K+     
Sbjct: 148 ATAERLKRGMKGGNKYGKPVPGQPQPQSINRPREHGEIKDADINPLRNKRDVWKINTVPF 207

Query: 204 ---HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
              H    P  L+   L++    G I+LDPF GSGT+G VA ++ R FIGIE+   Y ++
Sbjct: 208 KGGHYAAYPPKLVETCLLAGCPEGGIVLDPFMGSGTTGMVASQMGRHFIGIELNPAYTEL 267

Query: 261 ATKRIAS 267
           A KRI  
Sbjct: 268 AYKRIGG 274


>gi|253571032|ref|ZP_04848440.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251839981|gb|EES68064.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|313157076|gb|EFR56506.1| DNA (cytosine-5-)-methyltransferase [Alistipes sp. HGB5]
          Length = 261

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 109/267 (40%), Gaps = 46/267 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I   + I  ++ +   SVD + AD PY     G L R + +        WD+    EA
Sbjct: 5   DNIYNMDCIEGMKLMANGSVDAVIADLPY-----GVLNRSNKAA------HWDRQIPLEA 53

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                  W    RR+ KP   + +      IF    ML     W  N +VWRK     + 
Sbjct: 54  ------LWK-QYRRITKPGSPVILFAQ--GIFSAQLMLSQPRMWRYN-LVWRKDRVTGHL 103

Query: 141 RGRRFQ-NAHETLI-----------WASPSP---------KAKGYTFN-YDALKAANEDV 178
              R     HE +I             +P P         K  G+T   Y  +K A   V
Sbjct: 104 NANRMPLRQHEDIIVFYDRQPVYHPQMTPCPPERRNHGRRKTDGFTNRCYGEMKLA--PV 161

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
           ++  D   P    S    +K G   HPTQKP AL+  ++ + T  GD++LD   GSGT+ 
Sbjct: 162 RVAEDKY-PTSVISIPKEHKTGAFYHPTQKPVALIEYLIRTYTNEGDVVLDNCIGSGTTA 220

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRI 265
             A +  R +IG E++  Y +I  +RI
Sbjct: 221 IAAIRTGRHYIGFEIEPTYCEIVGRRI 247


>gi|322836391|ref|YP_004215768.1| DNA methylase N-4/N-6 domain protein [Rahnella sp. Y9602]
 gi|321170944|gb|ADW76641.1| DNA methylase N-4/N-6 domain protein [Rahnella sp. Y9602]
          Length = 214

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 106/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I+G+   V+   P+ +VD I  DPPY   L G   R   ++ +     W    S E +
Sbjct: 3   RFIQGDCEQVMSGFPSNAVDFILTDPPY---LVGFTDRTGRTIANDKQGDWLLPVSKEMF 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN-F 140
                       RVLKPN       +++ +       +   F ++  +V+ K+    + F
Sbjct: 60  ------------RVLKPNSLAVSFYAWNRVDLFMQAWKAAGFRVVGHVVFTKTYASKSAF 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R ++A+       L+   P P    + +                             
Sbjct: 108 VGYRHESAYILAKGRPLLPEKPLPDVMPWQYT---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP ++L  ++ S T+PG I+LDPF GSG++   A++  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVSVLRPLIESFTQPGSIVLDPFAGSGSTCVAAEQAGRRWIGIELME 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+  ++
Sbjct: 196 QYHATGLRRLTELR 209


>gi|308061664|gb|ADO03552.1| DNA methylase [Helicobacter pylori Cuz20]
          Length = 369

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 118/285 (41%), Gaps = 56/285 (19%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N I    ++I   +S+  L+KLP   +D++   PPYN  +N            A  D+  
Sbjct: 116 NEIQSCLNQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGIN----------YSATQDA-- 163

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWV---------IGSYHNI--FRIGTMLQNLN 122
             + +  Y     A    C RVLK  G + V         I ++H I  F I   L    
Sbjct: 164 --NLWHEYFNTLFAIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISKFFIDEGL---- 217

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETL-IWASPSPKAKGYTFNYDALKAAN------ 175
            W   +I+W K+N         +   + T   W SP+     Y++ +  +   N      
Sbjct: 218 IW-KGEILWEKNN---------YNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNNLKKEG 267

Query: 176 --EDVQMRSDWLIPICSGS-----ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
             + + +  D       G      ER   + G   H    PE L+ R L   +   DIIL
Sbjct: 268 DKDSIDITDDEFKKWVYGKWNFAPERNMKQYG---HDAMFPEELVKRCLKLFSYQNDIIL 324

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           DPF G+GT+  VAK+L R FIGI++ + Y ++A  R+  V  L N
Sbjct: 325 DPFNGAGTTTKVAKQLGRRFIGIDISEKYCEVARARLKEVTNLFN 369


>gi|307151722|ref|YP_003887106.1| DNA methylase N-4/N-6 domain-containing protein [Cyanothece sp. PCC
           7822]
 gi|306981950|gb|ADN13831.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7822]
          Length = 328

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 134/324 (41%), Gaps = 103/324 (31%)

Query: 29  ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
           +++L ++P +++DLI   PP+ L     L + ++  V+A     D++  +  ++ F + +
Sbjct: 1   MAILSEVPDETIDLICTSPPFAL-----LRKKEYGNVNA-----DQYVQW--FETFAQQF 48

Query: 89  LLACRRVLKPNGTL-------WVIG-SYHNIFRIGTMLQ--------NLNFWILNDIVWR 132
                R+LKPNG+L       WV G    +++    ++          L F++  ++ W 
Sbjct: 49  Y----RILKPNGSLVIDIGGSWVKGYPVRSLYHFELVMHLCKPRIEGGLGFYLAQELYWY 104

Query: 133 KSNPMPN------FRGRRFQNAHETLIWASPSPKAKGYTFN----------------YDA 170
               +P        R  R ++A  T+ W S  P  K    N                YDA
Sbjct: 105 NPAKLPTPAEWVTVRRERVKDAVNTIWWLSKDPHPKACNKNVLRPYSKAMENFLKNGYDA 164

Query: 171 -LKAANEDVQMRS--------------------------------DWLIP--------IC 189
            L+ +  D+  +                                 DWL+         + 
Sbjct: 165 KLRPSGHDISRKFQKNRGGAIPPNIIDAQESAVATAIGSPVLATFDWLLSNDLAQPVNVI 224

Query: 190 SGS--------ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
           S S        +R   ++G K HP + P+AL   I+   T+PGD++LDPF GS  +G VA
Sbjct: 225 SASNTASNDYYQRRCKEEGLKPHPARFPQALPEFIINLCTEPGDLVLDPFCGSNVTGRVA 284

Query: 242 KKLRRSFIGIEMKQDYIDIATKRI 265
           + L+R ++ I++ ++Y+  +  R 
Sbjct: 285 EDLKRHWLAIDINEEYLKASQYRF 308


>gi|254188186|ref|ZP_04894698.1| DNA methylase [Burkholderia pseudomallei Pasteur 52237]
 gi|157935866|gb|EDO91536.1| DNA methylase [Burkholderia pseudomallei Pasteur 52237]
          Length = 258

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 109/255 (42%), Gaps = 36/255 (14%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYN---LQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           D++   +++++   LP  S+D++F DPPY+   L  + +   P    ++  +D+   ++ 
Sbjct: 19  DRLHAMDALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSTKYIN--SDTKTVYTD 76

Query: 78  FE-------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
           FE       A+  +  AWL  CRR LKP G L     +  +  +  ++Q     +    V
Sbjct: 77  FESDNMDQRAWAFWCHAWLSECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILRGVAV 136

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W K+      R   F    E ++WAS               + A  D ++    + P   
Sbjct: 137 WDKTPGRTRPRRGGFAQQAEFVVWAS---------------RGAMRDCEVYLPGVFPC-- 179

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
              RL      K H T+KP   ++R +V     G ++ D F GSGT  A A++    +IG
Sbjct: 180 ---RLPLP---KQHVTEKPLD-IAREVVRLVPAGGVVCDLFAGSGTFLAAAREAGLHWIG 232

Query: 251 IEMKQDYIDIATKRI 265
            E    Y  IA  R+
Sbjct: 233 CETNAAYHAIALHRL 247


>gi|256421531|ref|YP_003122184.1| DNA methylase N-4/N-6 domain protein [Chitinophaga pinensis DSM
           2588]
 gi|256036439|gb|ACU59983.1| DNA methylase N-4/N-6 domain protein [Chitinophaga pinensis DSM
           2588]
          Length = 601

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 101/426 (23%), Positives = 177/426 (41%), Gaps = 91/426 (21%)

Query: 19  WKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQL---YRPDHSLVDAVTDSW 72
           W +KI  G+++ V+  L       +D I+ DPPY+ + + +     R    + +A++   
Sbjct: 51  WMNKIFWGDNLQVMSHLLKDYKGQIDFIYIDPPYDSKADYRKKIKLRGKEVINNAISFEE 110

Query: 73  DKFS---SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW---IL 126
            +++   S + Y  F    L+  R +L   G++ +   +H +  +  ++  + F     +
Sbjct: 111 KQYTDIWSNDEYLQFMYERLMLIRELLSDKGSIILQCDWHKVHHLRCIMDEI-FGPDNCI 169

Query: 127 NDIVWRKSNPMPNFRG---RRFQNAHETLIWASPSPKAKGYTFNY------------DAL 171
           N+I+W        F+G   + F   H+ L++       KG  F Y            DA+
Sbjct: 170 NEIIWH----YKTFQGQTKKYFARKHDNLLFYK-----KGSDFIYNKLYDTSLENTIDAV 220

Query: 172 KAAN---------------EDVQM---------------RSDWLIPICSGS--------E 193
           + A+               +D +                 +D +I    G         +
Sbjct: 221 RWADYIDENGRIYGKKMPLQDSRFIRYLNKWKRAYKREPEADDVIYEAKGQPLDSVWDMK 280

Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
            L  K  EKL +PTQKPE L+ RI++++T  G I+ D F GSGT  AVA K  R FIG +
Sbjct: 281 GLDPKSEEKLGYPTQKPEDLMERIILATTNRGSIVFDCFMGSGTVQAVAMKTGRKFIGAD 340

Query: 253 MKQDYIDIATKRIASVQPLGNI---ELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNA- 308
           +    +   TKR+  V    N    ++T  TG +      F++   R  ++  +IL  A 
Sbjct: 341 INLGAVQTTTKRLLHVAAELNKRKEKITRYTGFQVYNVNHFDVF--RNPLEAKEILIKAL 398

Query: 309 -----QGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSIN- 362
                  N       DG ++S   +  I+R+      +E    +++  FEKL   H    
Sbjct: 399 EIKPFPNNNVYDGKKDGRMVS---IMPINRITTLADLNELIANFDYKAFEKLKSKHPRKP 455

Query: 363 TLRILV 368
            LR+L+
Sbjct: 456 VLRLLL 461


>gi|167914799|ref|ZP_02501890.1| site-specific DNA methyltransferase [Burkholderia pseudomallei 112]
          Length = 258

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 109/255 (42%), Gaps = 36/255 (14%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYN---LQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           D++   +++++   LP  S+D++F DPPY+   L  + +   P    +++ T +   ++ 
Sbjct: 19  DRLHATDALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSTKYINSGTKT--VYTD 76

Query: 78  FE-------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
           FE       A+  +  AWL  CRR LKP G L     +  +  +  ++Q     +    V
Sbjct: 77  FESDNMDQRAWAFWCHAWLSECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILRGVAV 136

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W K+      R   F    E ++WAS               + A  D ++    + P   
Sbjct: 137 WDKTPGRTRPRRGGFAQQAEFVVWAS---------------RGAMRDCEVYLPGVFPC-- 179

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
              RL      K H T+KP   ++R +V     G ++ D F GSGT  A A++    +IG
Sbjct: 180 ---RLPLP---KQHVTEKPLD-IAREVVRLVPAGGVVCDLFAGSGTFLAAAREAGLHWIG 232

Query: 251 IEMKQDYIDIATKRI 265
            E    Y  IA  R+
Sbjct: 233 CETNAAYHAIALHRL 247


>gi|209543157|ref|YP_002275386.1| DNA methylase N-4/N-6 domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530834|gb|ACI50771.1| DNA methylase N-4/N-6 domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 225

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 110/252 (43%), Gaps = 47/252 (18%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           ++++ I+ G+S+ ++ +LP  +VD I  DPPY +   G   R    + +     W +   
Sbjct: 9   DFRNTILNGDSVQLMRRLPRNAVDFILTDPPYLVNYQG---RDGRKVRNDDNARWLR--- 62

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
                AF +       RVLK  G       ++ I       +   F ++  IV+RKS   
Sbjct: 63  ----PAFNQ-----MHRVLKWGGFAVSFYGWNRIDLFADAWKAAGFRMVGHIVFRKSY-- 111

Query: 138 PNFRGRRFQNAHET---LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
            +   R  +  HE+   L   + +P AK      D                +P       
Sbjct: 112 -SSSSRFLRYEHESAYLLAKGNVTPPAKPIPDVLD----------------MPYS----- 149

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                G KLHPTQKP A L  ++ +    G ++LDPF GSG+S   A+ L R ++G+E+ 
Sbjct: 150 -----GNKLHPTQKPVAALLPLVEAFCPVGGLVLDPFAGSGSSLVAAQHLGRDWLGMELD 204

Query: 255 QDYIDIATKRIA 266
            ++   AT+R+A
Sbjct: 205 PEHAATATRRLA 216


>gi|269976406|ref|ZP_06183391.1| DNA methylase [Mobiluncus mulieris 28-1]
 gi|269935207|gb|EEZ91756.1| DNA methylase [Mobiluncus mulieris 28-1]
          Length = 354

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 108/236 (45%), Gaps = 40/236 (16%)

Query: 53  LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA--FTRAWLLACRRVLKPNGTLWVIGSYHN 110
             GQ Y+   ++   VT   D+F+ +  + A     AW     RVLKP+GTL++   Y  
Sbjct: 128 FKGQSYK---TIRGQVTSYNDEFADYWGFLAPRLEEAW-----RVLKPSGTLYLHLDYRE 179

Query: 111 IFRIGTMLQNL--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
           +     +L  L      LN+I+W  +        RR+   H+ ++     PK   Y F+ 
Sbjct: 180 VHYAKVLLDALFGRECFLNEIIW--AYDYGARTKRRWPAKHDNILVYVKDPKQ--YYFDS 235

Query: 169 DALKAANEDVQMRSDWLIP-ICSGSERLRNK--------------DGEKL-HPTQKPEAL 212
           +++         R  ++ P + +  +  R K                EK  + TQKPE +
Sbjct: 236 ESVD--------REPYMAPGLVTAEKAARGKLPTDVWWHTIVSPTGKEKTGYATQKPEGI 287

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           L RI+ +S++PGD  LD F GSGT+GAVA K+ R F+ ++     I +   R A+ 
Sbjct: 288 LRRIVAASSRPGDWALDFFAGSGTTGAVAGKMGRHFVLVDENPQAIAVMRARFAAA 343


>gi|209543239|ref|YP_002275468.1| DNA methylase N-4/N-6 domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530916|gb|ACI50853.1| DNA methylase N-4/N-6 domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 223

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 109/258 (42%), Gaps = 43/258 (16%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
           + +++N  F  ++ I  G+S+S++  +P  SVD I  DPPY +   G+         D  
Sbjct: 1   MTDSENGAF--RNVIRHGDSVSLMRAMPRGSVDFILTDPPYLVGYQGR---------DGR 49

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
           T   D  +      A+ R       RVLK  G      S+  +       +   F ++  
Sbjct: 50  TVRNDDNA------AWLRPAFSQMHRVLKEGGFAVSFYSWTKVHLFVDAWRAAGFRVVGH 103

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
           +V+RKS        R  + +HE           + Y       K   + +    D  +P 
Sbjct: 104 LVFRKSYAS---SARFLRYSHE-----------QAYLLAKGDAKLPRQPIPDVID--MPY 147

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
                      G KLHPTQKP A L  ++ +    G I  DPF GSG+S   A+ L R +
Sbjct: 148 S----------GNKLHPTQKPVAALLPLVHAFCPVGGITFDPFCGSGSSLVAAQHLGRDW 197

Query: 249 IGIEMKQDYIDIATKRIA 266
           +G+E+ + +   A++R+A
Sbjct: 198 LGMELDETHAATASRRLA 215


>gi|323358512|ref|YP_004224908.1| adenine specific DNA methylase Mod [Microbacterium testaceum
           StLB037]
 gi|323274883|dbj|BAJ75028.1| adenine specific DNA methylase Mod [Microbacterium testaceum
           StLB037]
          Length = 324

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 94/206 (45%), Gaps = 30/206 (14%)

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSN 135
           F+ Y  F    L+   R+L  +GTL++   Y  +     M   L      LN+++W    
Sbjct: 126 FDDYWGFLEPRLIEAWRLLADDGTLYLHLDYREVHYAKVMCDALFGRDKFLNELIWAYDY 185

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL--------------KAANEDVQMR 181
                  RR+   HET++    +P    Y F+ DA+              KAA   +   
Sbjct: 186 GAKT--KRRWPTKHETILVYVKNPAT--YFFDSDAVDREPYMAPGLVTAEKAARGKMPTD 241

Query: 182 SDW--LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
             W  ++P        R K G   +PTQKPE +L R++ +S++PGD +LD F GSGT GA
Sbjct: 242 VWWHTIVPTTG-----REKTG---YPTQKPEGVLRRMVQASSRPGDRVLDMFAGSGTLGA 293

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRI 265
           VA  L R  + I+   D + +  KR+
Sbjct: 294 VAAPLGRDSVLIDDNADAVAVMRKRL 319


>gi|308185115|ref|YP_003929248.1| type IIS restriction enzyme R protein (MBOIIR) [Helicobacter pylori
           SJM180]
 gi|308061035|gb|ADO02931.1| type IIS restriction enzyme R protein (MBOIIR) [Helicobacter pylori
           SJM180]
          Length = 587

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 90/188 (47%), Gaps = 28/188 (14%)

Query: 96  LKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
           +K  G+ ++  +  N       L+      LN I W K +   N + +R+ +A E++++ 
Sbjct: 5   IKDTGSFYIFNTPFNCALFLAYLRQKKAHFLNFITWVKKDGFANAK-KRYNHAQESILFY 63

Query: 156 SPSPKAKGYTFNYDALKAANEDVQ----MRSDWLIP------------ICSG-----SER 194
           S   K   YTFN D ++ A E  +     +S  ++             +C       S+R
Sbjct: 64  SMHKK--NYTFNADEVRTAYESTERIKHAQSKGILKNNKRWFPNPKGKLCLDVWEITSQR 121

Query: 195 LRNKDGEKL----HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
              K+  K+    HP+ KP+AL+ R++ +S+   D+ILD F GSG    VAK L R+FIG
Sbjct: 122 HVEKENGKILKPKHPSIKPKALIERMIKASSNENDLILDLFSGSGMISLVAKSLGRNFIG 181

Query: 251 IEMKQDYI 258
            E   +Y+
Sbjct: 182 CETHVEYV 189


>gi|291087315|ref|ZP_06346093.2| DNA (cytosine-5-)-methyltransferase [Clostridium sp. M62/1]
 gi|291075350|gb|EFE12714.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. M62/1]
          Length = 276

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 82/187 (43%), Gaps = 40/187 (21%)

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA------- 170
           L++  +++ NDI+W K NPMP     R    +E +   S   K+K Y F+Y A       
Sbjct: 91  LRDTGWYLRNDIIWMKDNPMPESVKDRCARCYEHIFLFS---KSKKYFFDYKAISEPIAP 147

Query: 171 ---------LKAANEDVQMRSDWLIPICSGSER------------LRNK-DGEKL----- 203
                    +K  N+  +       P      R            LRNK D  K+     
Sbjct: 148 ATAERLKRGMKGGNKYGKPVPGQPQPQSINRPREHGEIKDADINPLRNKRDVWKINTVPF 207

Query: 204 ---HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
              H    P  L+   L++    G I+LDPF GSGT+G VA ++ R F+GIE+  +Y ++
Sbjct: 208 KGGHYAAYPPKLVETCLLAGCPEGGIVLDPFMGSGTTGMVASQMGRHFVGIELNPEYTEL 267

Query: 261 ATKRIAS 267
           A KRI  
Sbjct: 268 AYKRIGG 274


>gi|323485979|ref|ZP_08091310.1| hypothetical protein HMPREF9474_03061 [Clostridium symbiosum
           WAL-14163]
 gi|323400546|gb|EGA92913.1| hypothetical protein HMPREF9474_03061 [Clostridium symbiosum
           WAL-14163]
          Length = 318

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 118/324 (36%), Gaps = 93/324 (28%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW-DKFSSFE 79
           DKI  G+S+ VL+ LP   +D     PPY            + L D   D    + ++ E
Sbjct: 6   DKIYCGDSLQVLQALPENCIDCCVTSPPY------------YGLRDYGADGQIGREATPE 53

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWV----------------------------IGSYHNI 111
            Y +   A     +RVL P GT W+                            +   H  
Sbjct: 54  EYVSRITAVFHEVKRVLTPEGTCWLNIADTYCGTGSKAGHQDPKYPKGRNGQQVAVNHRA 113

Query: 112 ------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
                       + +   L+   +++ + I+W K+NPMP     R    +E +   +   
Sbjct: 114 PGCKPKDLIGIPWLVALALRGDGWYLRSSIIWYKTNPMPESCKDRPTRCYEYVFLLT--- 170

Query: 160 KAKGYTFNYDALKAA---------NEDVQMRSDWLIPICSGSE-----RLRNKDG---EK 202
           K K Y +++ A+               V   + +   +   ++     R R K     E 
Sbjct: 171 KTKKYYYDWQAVAEPIAPATAGRLKSGVGKGNKYAATVPGQNQPQKINRPRRKGAYTDEM 230

Query: 203 LHPTQK--------------------PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           + P +                     P  L    +++    G I+LDPF GSGT+ A AK
Sbjct: 231 ISPVRSRRNVWQINTTSYRGGHFAAFPPKLAETCILAGCPVGGIVLDPFLGSGTTAAAAK 290

Query: 243 KLRRSFIGIEMKQDYIDIATKRIA 266
            L R +IGIE+  DY ++A +RI 
Sbjct: 291 SLSRRYIGIELNPDYCELAKQRIG 314


>gi|148269728|ref|YP_001244188.1| DNA methylase N-4/N-6 domain-containing protein [Thermotoga
           petrophila RKU-1]
 gi|170288403|ref|YP_001738641.1| DNA methylase N-4/N-6 domain-containing protein [Thermotoga sp.
           RQ2]
 gi|222099314|ref|YP_002533882.1| M4C-methyltransferase [Thermotoga neapolitana DSM 4359]
 gi|147735272|gb|ABQ46612.1| DNA methylase N-4/N-6 domain protein [Thermotoga petrophila RKU-1]
 gi|170175906|gb|ACB08958.1| DNA methylase N-4/N-6 domain protein [Thermotoga sp. RQ2]
 gi|221571704|gb|ACM22516.1| M4C-methyltransferase [Thermotoga neapolitana DSM 4359]
          Length = 308

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 113/280 (40%), Gaps = 69/280 (24%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           DK+I+G++  VL+K+P  S+ L+   PPYN+   G+ Y  D +L              + 
Sbjct: 55  DKVIEGDAREVLKKIPDCSIHLMVTSPPYNV---GKEYDEDMTL--------------DE 97

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT------------MLQNLNFWILND 128
           Y  F    +    RVL     +W   +  N+  +G             + + + F I  +
Sbjct: 98  YLEFIEEIMKEVYRVL-----VWGGRACFNVANLGRKPYIPLHAYLIHLFEKIGFLIRGE 152

Query: 129 IVWRKS-----------------NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
           I+W K                  NP+        ++ HE +I  S     +    + +A 
Sbjct: 153 IIWDKGEAVSGSSTAWGSWMSPVNPV-------LRDQHEYIIVMSKGDLKRRKPSDREAK 205

Query: 172 KAANEDVQM---RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
                +  +   RS W  P  S       + G   HP   PE L  R +   T  GD++L
Sbjct: 206 STITREEFLEFTRSVWKFPPESA-----KRVG---HPAPFPEELPYRCIQLYTFKGDVVL 257

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           DPF G GT+   A K  R F+GIE+  +Y+  A +R+  +
Sbjct: 258 DPFAGVGTTCVAAVKTGRHFVGIEINPEYVKKAEERVKDI 297


>gi|313145883|ref|ZP_07808076.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides
           fragilis 3_1_12]
 gi|313134650|gb|EFR52010.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides
           fragilis 3_1_12]
          Length = 261

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 115/262 (43%), Gaps = 48/262 (18%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA-YDAFT 85
           + +  ++++   SVD I AD PY     G L R + S+      +WD+     A ++ + 
Sbjct: 2   DCMEGMKQIADGSVDAIIADLPY-----GVLNRSNPSV------NWDRQIPLAALWEQY- 49

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
                  RR+ KP+  + + G    +F    ML     W  N +VW+K     +   +R 
Sbjct: 50  -------RRITKPDSPIILFG--QGLFSAWLMLSQPRLWRYN-LVWQKDRVTGHLNAKRM 99

Query: 146 Q-NAHETLI-----------WASPSP---------KAKGYTFN-YDALKAANEDVQMRSD 183
               HE ++             +P P         K +G+T   Y  +K +   +   +D
Sbjct: 100 PLRQHEDILVFYKKQPAYHPQMTPCPPERRNHGRRKTEGFTNRCYGTMKLSPVRI---AD 156

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
              P         +K G   HPTQKP AL+  ++ + T  GD++LD   GSGT+   A +
Sbjct: 157 DKYPTSVIFMPKEHKKGAFYHPTQKPVALMEYLIRTYTDEGDVVLDNCIGSGTTAVAAIR 216

Query: 244 LRRSFIGIEMKQDYIDIATKRI 265
             R +IG E++Q Y +IA ++I
Sbjct: 217 TGRHYIGFEIEQAYCEIAERQI 238


>gi|317011742|gb|ADU85489.1| modification methylase KpnI [Helicobacter pylori SouthAfrica7]
          Length = 360

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 61/104 (58%), Gaps = 3/104 (2%)

Query: 168 YDALKAANEDVQMRS---DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
           YD +K A + ++ R+   ++     +  E L   +G KL  T KPEALL RIL  STK  
Sbjct: 143 YDEIKNAKKVIKTRTIFTEYGTTTEATKEILALFNGTKLFDTPKPEALLQRILEISTKEN 202

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           D++ D F GSGT+ AVA KL+R +IGIEM + +  +   R+  V
Sbjct: 203 DLVCDFFAGSGTTCAVAHKLKRKYIGIEMGEHFDSVILPRLKKV 246


>gi|298737029|ref|YP_003729559.1| modification methylase KpnI [Helicobacter pylori B8]
 gi|298356223|emb|CBI67095.1| Modification methylase KpnI [Helicobacter pylori B8]
          Length = 371

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 63/104 (60%), Gaps = 3/104 (2%)

Query: 168 YDALKAANEDVQMRS---DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
           YD +K A + ++ R+   ++     +  E L   +G KL  T KPEAL+SRIL  +T+  
Sbjct: 154 YDEIKNAKKVIKTRTIFTEYGTTTEATKEILALFNGTKLFDTPKPEALISRILEIATQEN 213

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           D++LD F GSGT+ AVA KL+R +IGIEM + +  +   R+  V
Sbjct: 214 DLVLDFFAGSGTTCAVAHKLKRKYIGIEMGEHFDSVILPRLKKV 257


>gi|217032420|ref|ZP_03437914.1| hypothetical protein HPB128_164g20 [Helicobacter pylori B128]
 gi|216945899|gb|EEC24517.1| hypothetical protein HPB128_164g20 [Helicobacter pylori B128]
          Length = 355

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 63/104 (60%), Gaps = 3/104 (2%)

Query: 168 YDALKAANEDVQMRS---DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
           YD +K A + ++ R+   ++     +  E L   +G KL  T KPEAL+SRIL  +T+  
Sbjct: 138 YDEIKNAKKVIKTRTIFTEYGTTTEATKEILALFNGTKLFDTPKPEALISRILEIATQEN 197

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           D++LD F GSGT+ AVA KL+R +IGIEM + +  +   R+  V
Sbjct: 198 DLVLDFFAGSGTTCAVAHKLKRKYIGIEMGEHFDSVILPRLKKV 241


>gi|308064145|gb|ADO06032.1| adenine-specific DNA methylase [Helicobacter pylori Sat464]
          Length = 348

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 62/104 (59%), Gaps = 3/104 (2%)

Query: 168 YDALKAANEDVQMRS---DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
           YD +K A + ++ R+   ++     +  E L   +G KL  T KPEALL RI+  ST+  
Sbjct: 131 YDEIKNAKKVIKTRTIFTEYGTTTEATKEILALFNGTKLFDTPKPEALLKRIIEISTQEN 190

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           D++LD F GSGT+ AVA KL+R +IGIEM + +  +   R+  V
Sbjct: 191 DLVLDFFAGSGTTCAVAHKLKRKYIGIEMGEHFDSVILPRLKKV 234


>gi|72537706|ref|YP_293736.1| DNA methylase [Burkholderia phage phi52237]
 gi|72398396|gb|AAZ72631.1| DNA methylase [Burkholderia phage phi52237]
          Length = 269

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 109/255 (42%), Gaps = 36/255 (14%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYN---LQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           D++   +++++   LP  S+D++F DPPY+   L  + +   P    ++  +D+   ++ 
Sbjct: 30  DRLHAMDALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSTKYIN--SDTKTVYTD 87

Query: 78  FE-------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
           FE       A+  +  AWL  CRR LKP G L     +  +  +  ++Q     +    V
Sbjct: 88  FESDNMDQRAWAFWCHAWLSECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILRGVAV 147

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W K+      R   F    E ++WAS               + A  D ++    + P   
Sbjct: 148 WDKTPGRTRPRRGGFAQQAEFVVWAS---------------RGAMRDCEVYLPGVFPC-- 190

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
              RL      K H T+KP   ++R +V     G ++ D F GSGT  A A++    +IG
Sbjct: 191 ---RLPLP---KQHVTEKPLD-IAREVVRLVPAGGVVCDLFAGSGTFLAAAREAGLHWIG 243

Query: 251 IEMKQDYIDIATKRI 265
            E    Y  IA  R+
Sbjct: 244 CETNAAYHAIALHRL 258


>gi|189347088|ref|YP_001943617.1| DNA methylase N-4/N-6 domain protein [Chlorobium limicola DSM 245]
 gi|189341235|gb|ACD90638.1| DNA methylase N-4/N-6 domain protein [Chlorobium limicola DSM 245]
          Length = 308

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 117/282 (41%), Gaps = 68/282 (24%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
            +S+  + +LP  SVDL+   PPY L    +                   +S + Y A+ 
Sbjct: 19  ADSLEFMRQLPDDSVDLVVTSPPYALHFKKEYGN----------------ASQQEYIAWF 62

Query: 86  RAWLLACRRVLKPNGTL-------WVIG----SYHNIFRIGTMLQNLNFWILNDIVWRKS 134
             +    +R++KP+G+        W  G    S ++   +  ++    + +  +  W   
Sbjct: 63  LPFAREIKRIIKPSGSFVLNIGGSWQPGVPVRSLYHYRVLLALVDETGYDLAQEFFWFNP 122

Query: 135 NPMP------NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM-------- 180
             MP      N R  R +++ E + W    P A  +  N   L+  ++D++         
Sbjct: 123 AKMPAPAEWVNVRRIRVKDSVEYIFWFVKDPMA--HADNRKVLQPYSDDMKRLIKRGVKQ 180

Query: 181 ---RSDWLIPICSGSER--------------------LRNKD--GEKLHPTQKPEALLSR 215
               S  +I     S+R                    ++N    G K+HP + P  L   
Sbjct: 181 TIRPSGHVITGTFASDRGGSIPSNLIQCGNNESNSAYVKNSRIAGNKIHPARFPAELPRF 240

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
            +   T PGD++LDPF GS T+G VA++L+R ++G+E+++DY
Sbjct: 241 FMEFLTNPGDLVLDPFAGSNTTGHVAERLKRRWLGVELREDY 282


>gi|218885335|ref|YP_002434656.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756289|gb|ACL07188.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 399

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 88/202 (43%), Gaps = 21/202 (10%)

Query: 76  SSFEAYDAF----TRAWL-LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
           SS EA  A     +R W   ACRR    +  L          RI      + +++   I 
Sbjct: 197 SSAEALQAMQGKDSRGWADHACRRYSAGHSYLKDGEQCMIPSRIAERASRVGYYVKAVIT 256

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA-------NEDVQMRSD 183
           W K++ +P  +  R     E ++  +     K     Y +L +A       +E  ++   
Sbjct: 257 WAKTSSLPEPQTSRVSRNLEYVLHLTKVRTPKFDKEVYRSLPSALGGRNNGSETDKLSDV 316

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           W++P           +G   H  Q P AL +R +  +T   D++LDPF G+G S   A  
Sbjct: 317 WVLP---------TSNGRHGHGAQFPVALPARCIALATNANDLVLDPFVGAGNSAIAALA 367

Query: 244 LRRSFIGIEMKQDYIDIATKRI 265
           L+R FIGI+   +YID+A KRI
Sbjct: 368 LKRKFIGIDTSSEYIDVAKKRI 389


>gi|227498650|ref|ZP_03928794.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226904106|gb|EEH90024.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 319

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 128/332 (38%), Gaps = 105/332 (31%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPD--HSLVDAVTDSWDK 74
           D II  +++  L +LP +SV      PPY    +  L+ Q+ R D     +D +T+ + +
Sbjct: 7   DTIINRDALYALRELPEESVHCCVTSPPYYALRDYGLDMQIGREDTPEQYIDRLTEVFRE 66

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWV------IGS----YH------------NIF 112
                             RRVL+ +GTLW+       G+    YH             I 
Sbjct: 67  L-----------------RRVLRSDGTLWLNIADTYCGTGNKGYHADPKNPKGRNGQQIA 109

Query: 113 R------------------IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
           R                  +   L+   +++ +DI+W+K NPMP     R    +E +  
Sbjct: 110 RNNRVSGCKQKDLIGIPWLLAFALRADGWYLRSDIIWQKENPMPESVKDRPTRCYEHIFL 169

Query: 155 ASPSPKAKGYTFNYDAL------------KAANEDVQMRSDWLIP---ICSGSERLRNKD 199
            +   K+K Y ++  A+            +      Q  +D  IP      G  R R+  
Sbjct: 170 LT---KSKKYFYDAAAIAEPLAPTTAARYRTGRSAGQKYAD-EIPGQGKVQGLNRARSGS 225

Query: 200 --GEKLHPTQK---------------------PEALLSRILVSSTKPGDIILDPFFGSGT 236
              E L PT +                     P  L    + +    G ++LDPFFGSGT
Sbjct: 226 YYDEALMPTMRNRRDVWLINTVPYKGGHFAAFPPKLAETCIKAGCPKGGVVLDPFFGSGT 285

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +GA A++L R +IGIE+  +Y  +A  RI   
Sbjct: 286 TGAAARQLDRHYIGIEINAEYCALARARIGGT 317


>gi|327398792|ref|YP_004339661.1| DNA methylase N-4/N-6 domain-containing protein [Hippea maritima
           DSM 10411]
 gi|327181421|gb|AEA33602.1| DNA methylase N-4/N-6 domain protein [Hippea maritima DSM 10411]
          Length = 246

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 117/257 (45%), Gaps = 44/257 (17%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNL---QLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +   + + +L  +P +S+DLI  DPPY +   + NG  Y+ +   VD V       SSF 
Sbjct: 21  LYNADCLELLPCIPQESIDLILTDPPYGVGSNERNGINYKDEFYNVDEV-------SSF- 72

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y +            LK N   +V  +      +    +N  F++   ++W K N    
Sbjct: 73  LYGS------------LKDNSRAYVFTAQKTFIDVAKWFENNGFYLHQTLIWYKKNLAGG 120

Query: 140 FRGRR--FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
            + R   F + +E ++      K K +    D L    E  Q +S++ +           
Sbjct: 121 TKKRTYDFTSTYEQILNFH---KGKPHLLKKDHLSDVLEFPQPQSNYTL----------- 166

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
              ++ H  QKP  L+  ++  ST   DI+ DPF GSGT+ A A++L R ++ IE++ +Y
Sbjct: 167 --DKRYHIHQKPLKLIEYLIYVSTNENDIVFDPFAGSGTTAAAAERLGRRWVAIEIQPEY 224

Query: 258 IDIATKRI---ASVQPL 271
             IA +RI   AS++PL
Sbjct: 225 CQIAKERIRRFASIKPL 241


>gi|188528159|ref|YP_001910846.1| adenine-specific DNA methylase [Helicobacter pylori Shi470]
 gi|188144399|gb|ACD48816.1| adenine-specific DNA methylase [Helicobacter pylori Shi470]
          Length = 358

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 62/104 (59%), Gaps = 3/104 (2%)

Query: 168 YDALKAANEDVQMRS---DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
           YD +K A + ++ R+   ++     +  E L   +G KL  T KPEALL RI+  ST+  
Sbjct: 141 YDEIKNAKKVIKTRTIFTEYGTTTEATKEILALFNGTKLFDTPKPEALLKRIIEISTQEN 200

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           D++LD F GSGT+ AVA KL+R +IGIEM + +  +   R+  V
Sbjct: 201 DLVLDFFAGSGTTCAVAHKLKRKYIGIEMGEHFDSVILPRLKKV 244


>gi|306818317|ref|ZP_07452046.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris ATCC
           35239]
 gi|304648962|gb|EFM46258.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris ATCC
           35239]
          Length = 354

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 107/236 (45%), Gaps = 40/236 (16%)

Query: 53  LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA--FTRAWLLACRRVLKPNGTLWVIGSYHN 110
             GQ Y    ++   VT   D+F+ +  + A     AW     RVLKP+GT ++   Y  
Sbjct: 128 FKGQSY---ETIRGQVTSYDDEFADYWGFLAPRLEEAW-----RVLKPSGTFYLHLDYRE 179

Query: 111 IFRIGTMLQNL--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
           +     +L  L      LN+I+W  +        RR+   H+ ++     PK   Y F+ 
Sbjct: 180 VHYAKVLLDALFGRECFLNEIIW--AYDYGARTKRRWPAKHDNILVYVKDPKQ--YYFDS 235

Query: 169 DALKAANEDVQMRSDWLIP-ICSGSERLRNK--------------DGEKL-HPTQKPEAL 212
           +++         R  ++ P + +  +  R K                EK  + TQKPE +
Sbjct: 236 ESVD--------REPYMAPGLVTAEKAARGKLPTDVWWHTIVSPTGKEKTGYATQKPEGI 287

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           L RI+ +S++PGD +LD F GSGT+GAVA K+ R F+ ++     I +   R A+ 
Sbjct: 288 LRRIVAASSRPGDWVLDFFAGSGTTGAVAGKMGRHFVLVDENPQAIAVMRARFAAA 343


>gi|297379533|gb|ADI34420.1| Modification methylase [Helicobacter pylori v225d]
          Length = 369

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 119/285 (41%), Gaps = 56/285 (19%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N I    ++I   +S+  L+KLP   +D++   PPYN  +N    + D +L         
Sbjct: 116 NEIQSCLNQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGINYSTTQ-DANL--------- 165

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWV---------IGSYHNI--FRIGTMLQNLN 122
               ++ Y     A    C RVLK  G + V         I ++H I  F I   L    
Sbjct: 166 ----WQEYFNTLFAIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISKFFIDEGL---- 217

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETL-IWASPSPKAKGYTFNYDALKAAN------ 175
            W   +I+W K+N         +   + T   W SP+     Y++ +  +   N      
Sbjct: 218 IW-KGEILWEKNN---------YNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNNLKKEG 267

Query: 176 --EDVQMRSDWLIPICSGS-----ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
             + + +  D       G      ER   + G   H    PE L+ R L   +   DIIL
Sbjct: 268 DKDSIDITDDEFKKWVYGKWNFAPERNMKQYG---HDAMFPEELVKRCLKLFSYQNDIIL 324

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           DPF G+GT+  VAK+L R FIGI++ + Y ++A  R+  V  L N
Sbjct: 325 DPFNGAGTTTKVAKQLGRRFIGIDISEKYCEVARARLKEVTNLFN 369


>gi|257142662|ref|ZP_05590924.1| site-specific DNA-methyltransferase [Burkholderia thailandensis
           E264]
          Length = 235

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 106/249 (42%), Gaps = 36/249 (14%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYN---LQLNGQLYRPDHSLVDAVTDSWDKFSSFE---- 79
           +++++   LP  S+D++F DPPY+   L  + +   P    ++  +D+   ++ FE    
Sbjct: 2   DALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSTKYIN--SDTKTVYTDFESDNM 59

Query: 80  ---AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
              A+  +  AWL  CRR LKP G L     +  +  +  ++Q     +    VW K+  
Sbjct: 60  DQRAWAFWCHAWLTECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILRGVAVWDKTPG 119

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
               R   F    E ++WAS               + A  D ++    + P      RL 
Sbjct: 120 RTRPRRGGFAQQAEFVVWAS---------------RGAMRDCEVYLPGVFPC-----RLP 159

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                K H T+KP   ++R +V     G ++ D F GSGT  A A++    +IG E    
Sbjct: 160 LP---KQHVTEKPLD-IAREVVRLVPAGGVVCDLFAGSGTFLAAAREASLHWIGCETNAA 215

Query: 257 YIDIATKRI 265
           Y  IA  R+
Sbjct: 216 YHAIALHRL 224


>gi|148658589|ref|YP_001278794.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus sp.
           RS-1]
 gi|148570699|gb|ABQ92844.1| DNA methylase N-4/N-6 domain protein [Roseiflexus sp. RS-1]
          Length = 279

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 119/286 (41%), Gaps = 72/286 (25%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++II+G+ +  L  L  +S+DL    PPY                D + D + K  SF+ 
Sbjct: 11  NRIIQGDCMEELAALSDESIDLTLFSPPY----------------DGIRD-YKKNWSFDI 53

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVI--------GSYHNIFRIGTMLQNLNFWILNDIV-- 130
            +   + +     RV K  G + VI              FR+     +   W L + V  
Sbjct: 54  VELGDQLY-----RVTKDGGVVVVIIGDGTRQFAKSLTSFRLAVSWVDEIGWKLFECVIY 108

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
            R  NP   +  +RF+  HE ++      + K  TF  D L   ++           I S
Sbjct: 109 HRDGNPGA-WWNQRFRVDHEYVLIFFKGERPK--TFQKDHLMVPSKHAG-------KIYS 158

Query: 191 GSERL---------------------------RNKDGEKL---HPTQKPEALLSRILVSS 220
           G++RL                            N +G +L   HP   P+ L   I++  
Sbjct: 159 GTDRLTNGGFKRITPKAVNPLKCRGTVWRYATSNTEGNRLKLQHPATFPDKLAEDIILCF 218

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           ++PGDI+LDP  GSGT+  +A+  +R FIGIE+  +Y +IA KR+A
Sbjct: 219 SQPGDIVLDPMCGSGTTCVMARNHQRHFIGIEISPEYCEIAGKRLA 264


>gi|290957744|ref|YP_003488926.1| DNA methylase [Streptomyces scabiei 87.22]
 gi|260647270|emb|CBG70375.1| putative DNA methylase [Streptomyces scabiei 87.22]
          Length = 251

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 102/250 (40%), Gaps = 31/250 (12%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT--DSWDKFSSFEAYD 82
           +G+++SVL  LP   VD +  DPPYN        R   S     T  DS +  + F   +
Sbjct: 7   QGDALSVLAGLPDGCVDSVITDPPYNSGGRTAKERTTRSAKQKYTSADSKNDLADFTGEN 66

Query: 83  AFTRAW-------LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
              R++       +    R+ K  GT  +   +  +      +Q   +     + W K  
Sbjct: 67  MDQRSYSFWLTQIMTEAHRLTKSGGTALLFTDWRQLPTTTDAIQAAGWLWRGVLAWHKPQ 126

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
             P  RGR  QN  E ++WAS  P           +  +   V +   +     SG++R 
Sbjct: 127 ARPQ-RGRFTQNC-EFIVWASKGP-----------IDGSRNPVYLPGMYSASQPSGAKRQ 173

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                   H TQKP  ++ R LV  +  G  +LD   GSG++G  A    R FIG+E  +
Sbjct: 174 --------HITQKPVEVM-RELVKISPEGGTVLDFCAGSGSTGVAALLEGRDFIGVEKTE 224

Query: 256 DYIDIATKRI 265
            Y  IA  R+
Sbjct: 225 HYASIAEARL 234


>gi|325661423|ref|ZP_08150049.1| hypothetical protein HMPREF0490_00783 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472372|gb|EGC75584.1| hypothetical protein HMPREF0490_00783 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 340

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 120/267 (44%), Gaps = 46/267 (17%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K+  I G+ +  L+K+  +SVDL+   PPY+   N ++Y  D   +           S+E
Sbjct: 4   KNTWINGDCLKELKKMDDESVDLVITSPPYH---NLRVYSNDPCDLSNC-------ESYE 53

Query: 80  AYDAFTRAWLLACRRVLKPNGTL--------WVIGSYHNIFR------IGTMLQNLNFWI 125
            Y       +  C RVLKP G          + IG  + + +      I  +++  +  +
Sbjct: 54  EYYYLLGLVIAECSRVLKPGGKFVMQFEDYNYTIGRDNKMGQESLTGDIDRIMKEHDMSL 113

Query: 126 LNDIVWRKSNPMPNFRGR-----RFQNAHETLIWASPSPKAKGYTFNY------DALKAA 174
                WRK +       +     R   A +T++ A+      G+ + Y      + +KA+
Sbjct: 114 WTKAFWRKYSAQRAMLAQGNLYYRNMKARDTILAANV-----GFVYVYKKAGECELIKAS 168

Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
           +  ++  +DW   + + S      +    H T   E L+ R +   + PGD+ILDPF G+
Sbjct: 169 DITLEEWADWADGVWNIS------NSGIGHTTPFAEELVKRCIKLWSCPGDVILDPFAGA 222

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           GT   VA +  R+ IGIE+K+++ D+A
Sbjct: 223 GTVNKVAIENNRNAIGIELKKEFYDLA 249


>gi|258541897|ref|YP_003187330.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-01]
 gi|256632975|dbj|BAH98950.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-01]
 gi|256636032|dbj|BAI02001.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-03]
 gi|256639087|dbj|BAI05049.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-07]
 gi|256642141|dbj|BAI08096.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-22]
 gi|256645196|dbj|BAI11144.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-26]
 gi|256648251|dbj|BAI14192.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-32]
 gi|256651304|dbj|BAI17238.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654295|dbj|BAI20222.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-12]
          Length = 285

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 125/274 (45%), Gaps = 51/274 (18%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + +I+ G+ +  L+++PA+SVD++   PPYN+ L+ + Y PD    +   D         
Sbjct: 29  QQEIVMGDCLRALKRVPAESVDVVVTSPPYNIGLSYRSY-PDRREEEDYLD--------- 78

Query: 80  AYDAFTRAWLLAC----RRVLKPNGTLW--VIGSYHNI---FRIGTMLQNLNFWILNDIV 130
                   W+L      +R+LK +G+ +  + GS       F +   L++L F + N I 
Sbjct: 79  --------WMLEVAQQLQRILKDDGSFFLNISGSSAQPWLPFELAVRLRDL-FVLQNHIS 129

Query: 131 WRKS-----NPMPNFR---GRRF-QNAHETLIWASPSPKAK------GYTFNYD---ALK 172
           W KS     +   +F+    +RF    HE +   +     +      G  +      A +
Sbjct: 130 WVKSISVGEDSFGHFKPMNSQRFLHRGHEHVFHFTLHGDVRLDRLRAGVPYKDKSNIARR 189

Query: 173 AANEDVQMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
              +D + R D W IP     E +R +  +  HP   P AL  + ++   + G  +LDPF
Sbjct: 190 GHRQDRRCRGDTWFIPY----ETVRGRAEKFDHPGTFPVALPEQCILLHGREGARVLDPF 245

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
            G+GT+   A++L    +G+E+  +Y+ IA  R+
Sbjct: 246 MGTGTTLLAAQRLGCYGLGMELDPEYVAIARARL 279


>gi|265984913|ref|ZP_06097648.1| DNA methylase N-4/N-6 domain-containing protein [Brucella sp.
           83/13]
 gi|264663505|gb|EEZ33766.1| DNA methylase N-4/N-6 domain-containing protein [Brucella sp.
           83/13]
          Length = 215

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 50/69 (72%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G +LHPTQKP   L+ ++ + TKP D++LDPF GSG++ A A+ L R +IGIE+ +++  
Sbjct: 140 GNRLHPTQKPVEALAPLIKAFTKPDDLVLDPFCGSGSTLAAAQHLGRDWIGIELDKNHYA 199

Query: 260 IATKRIASV 268
            A KR+AS+
Sbjct: 200 TACKRLASM 208


>gi|28199223|ref|NP_779537.1| DNA methylase [Xylella fastidiosa Temecula1]
 gi|182681950|ref|YP_001830110.1| DNA methylase N-4/N-6 domain-containing protein [Xylella fastidiosa
           M23]
 gi|28057329|gb|AAO29186.1| DNA methylase [Xylella fastidiosa Temecula1]
 gi|182632060|gb|ACB92836.1| DNA methylase N-4/N-6 domain protein [Xylella fastidiosa M23]
 gi|307578213|gb|ADN62182.1| DNA methylase N-4/N-6 domain-containing protein [Xylella fastidiosa
           subsp. fastidiosa GB514]
          Length = 237

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 103/241 (42%), Gaps = 36/241 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY--NLQLNGQLYRPD-----HSLVDAVTDSWD- 73
           ++ +G+++ +L  + + SVD +  DPPY          ++P      ++    V   +D 
Sbjct: 10  RLHEGDALRLLCDIDSASVDAVITDPPYCSGAMRMADRFKPTKRKYINNGTKHVAPDFDC 69

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
            F     + A++  WL  CRRV +P G L V   +  +  +   +Q+  +     +VW K
Sbjct: 70  DFRDHRGFLAWSSQWLSECRRVTRPGGVLLVFTDWRMLPTLTDAVQSAGWAWQGIVVWDK 129

Query: 134 SNPMPNFRGRRFQNAHETLIWASP---SPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           + P    +  RF++  E ++WAS    +PKA   T                     P+  
Sbjct: 130 T-PACRPQLGRFRSQAEFIVWASCGLMNPKAHPVT---------------------PV-- 165

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           G         EK H   KP AL+   LV    P   +LDPF GSGT+G  A +    FIG
Sbjct: 166 GVFSTGTAAREKRHQVGKPLALMEH-LVKIVPPASTVLDPFAGSGTTGVAALRAGHRFIG 224

Query: 251 I 251
           +
Sbjct: 225 M 225


>gi|53717799|ref|YP_106785.1| phage-encoded modification methylase [Burkholderia pseudomallei
           K96243]
 gi|52208213|emb|CAH34144.1| phage-encoded modification methylase [Burkholderia pseudomallei
           K96243]
          Length = 252

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 112/260 (43%), Gaps = 38/260 (14%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYN---LQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           D++   +++++   LP  S+D++F DPPY+   L  + +   P    ++  +D+   ++ 
Sbjct: 19  DRLHAMDALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSTKYIN--SDTKTVYTD 76

Query: 78  FE-------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
           FE       A+  +  AWL  CRR LKP G L     +  +  +  ++Q     +    V
Sbjct: 77  FESDNMDQRAWAFWCHAWLSECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILRGVAV 136

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W K+      R   F    E ++WAS               +    D ++    + P   
Sbjct: 137 WDKTPGRTRPRRGGFAQQAEFVVWAS---------------RGVMRDCEVYLPGVFPC-- 179

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
              RL      K H T+KP   ++R +V     G ++ D F GSGT    A+++   +IG
Sbjct: 180 ---RL---PLPKQHVTEKPLD-IAREVVRLVPAGGVVCDLFAGSGTFLVAAREVGLHWIG 232

Query: 251 IEMKQDYIDIATKRIASVQP 270
            E  Q Y  +A  R+  +QP
Sbjct: 233 SETNQTYRSLACNRL--MQP 250


>gi|323345090|ref|ZP_08085314.1| DNA methylase N-4/N-6 [Prevotella oralis ATCC 33269]
 gi|323094360|gb|EFZ36937.1| DNA methylase N-4/N-6 [Prevotella oralis ATCC 33269]
          Length = 280

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 109/271 (40%), Gaps = 51/271 (18%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G  +S ++K+  KSV+ I   PPYNL      Y  + S  +     W+      A     
Sbjct: 25  GECVSTMKKMREKSVNTIVTSPPYNLNKKYGKYNDNRSFAE-----WENLIGRVAE---- 75

Query: 86  RAWLLACRRVLKPNGTLWVIGS------YHNIFRIGTM----LQNLNFWILNDIVWRKSN 135
                A +RVL  +G+  +  S         I  +  M     +   + + N IVW  +N
Sbjct: 76  -----AAKRVLTDDGSFLLNVSPVPDKKTKEIIPLDAMAYFIFKRHGYALRNSIVWHFNN 130

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA--------------------- 174
            M N   R      E ++W         Y FN + ++                       
Sbjct: 131 -MQNCVNR-LSGRWEAILWFVKD--IDNYQFNLNDIRIPYITKNDKRLEGGAGRNPTDTW 186

Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
           N DV+    W     +   +  NK G   HP   P  ++ RI+  +T  GD++LDPF GS
Sbjct: 187 NFDVEGSDFWYFDRVNNMTK--NKLGLAEHPCIFPTPMIERIIKMTTHKGDVVLDPFLGS 244

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           GT+   A+KL R  +GIE+ + ++ I  KR+
Sbjct: 245 GTTLVAAQKLGRVGLGIELDKKFVPIIKKRV 275


>gi|317010048|gb|ADU80628.1| type IIS restriction enzyme M2 protein (mod) [Helicobacter pylori
           India7]
          Length = 287

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 125/283 (44%), Gaps = 49/283 (17%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL-VDAVTDSWDKFSSFEAYDAFT 85
           +S + + ++P  SVDLI   PPY    N + Y  + +  +   T   +   + E Y+ + 
Sbjct: 9   HSSTNMNEVPDNSVDLIITSPPY---FNIKDYAKNGTQDLQHSTQHVEDLGALEKYEDYL 65

Query: 86  RAWL---LACRRVLKPNGTLW-----------VIGSYHN--IFRIG-----TMLQNLN-- 122
              L   L C RVLKPNG L            V+ +++N  IF +      ++L +LN  
Sbjct: 66  LGLLKVWLECYRVLKPNGKLCINVPLMPMLKKVLNTHYNRHIFDLHADIQHSILHDLNNT 125

Query: 123 ------FWILNDIVWRKSNP--------MPNFRGRRFQNAHETL--IWASPSPKAKGYTF 166
                  ++L+  +W++ NP         P  R    QN  E +        PK      
Sbjct: 126 LENKPKMFLLDVYIWKRVNPTKRLMFGSYPYPRNFYAQNTIEFIGVFVKDGKPKQPTEEQ 185

Query: 167 NYDALKAANEDVQM-RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
              +     E V+  +  W IPI + ++    K     H    P  L  R++   +  GD
Sbjct: 186 KEQSQLTQEEWVEFTKQIWEIPIPNKNDIAFGK-----HAALMPAELARRLIRLYSCVGD 240

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           ++LDPF GSGT+   AK L+R+FIG E+ ++Y  +  +++ ++
Sbjct: 241 VVLDPFSGSGTTLREAKLLKRNFIGYELYENYKPLIEQKLGNL 283


>gi|205357999|ref|ZP_03223900.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205328364|gb|EDZ15128.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
          Length = 307

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 43/68 (63%)

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           +D EK HPTQKP ALL  ++ + + PGD +LD   GSG++G       R FIGIE +Q Y
Sbjct: 232 RDREKYHPTQKPVALLEDLIQTYSNPGDTVLDFTMGSGSTGVACVNTGRRFIGIEKEQKY 291

Query: 258 IDIATKRI 265
            DIA  RI
Sbjct: 292 FDIAAARI 299



 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 44/119 (36%), Gaps = 15/119 (12%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           E    I  G+ + V+  L   SVDLI  DPPY       L         A T  WD    
Sbjct: 4   EMNHTIYHGDCLDVMPTLEHGSVDLIVCDPPYGTMKGANL-----DTWSAATTQWD---- 54

Query: 78  FEAYDAFTRAWLLA-CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
               DA     L A C RVL+ NG L +        R+ T   + N      + W K +
Sbjct: 55  ----DAIDPVALFAVCERVLRVNGALVLFAQEPYTSRLITQAHS-NLPFSYRLAWEKEH 108


>gi|149907979|ref|ZP_01896647.1| haemagglutinin associated protein [Moritella sp. PE36]
 gi|149808985|gb|EDM68916.1| haemagglutinin associated protein [Moritella sp. PE36]
          Length = 222

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 107/248 (43%), Gaps = 29/248 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+ K +++  L+ LP +SVDL+  DPPY      +       L ++   S   FS F   
Sbjct: 2   KLHKIDAVDWLKSLPNESVDLVITDPPYESLEKHRKIGTTTRLKNSAGSSNQWFSIFPNS 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D    A +    RVLK N   ++      +F I  + + L F     IVW K        
Sbjct: 62  D--FPALVEQIYRVLKKNSHFYLFCDQETMFVIKPIAEELGFKFWKPIVWDKCAIG---M 116

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G  ++  +E +++             ++  K   +D+ M            + L+ K   
Sbjct: 117 GYHYRARYEFILF-------------FEKGKRKLQDLGM-----------PDVLQEKRVW 152

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           + +PT+KP  L+ +++  S+  GD+++DPFFGSG +   A  L R   G ++ Q   +  
Sbjct: 153 RGYPTEKPVPLIEKLISQSSSVGDLVIDPFFGSGATLIAAANLGRQSEGADIAQSAHEFV 212

Query: 262 TKRIASVQ 269
             RI  V+
Sbjct: 213 NNRIKPVE 220


>gi|261839365|gb|ACX99130.1| hypothetical protein HPKB_0530 [Helicobacter pylori 52]
          Length = 345

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 62/104 (59%), Gaps = 3/104 (2%)

Query: 168 YDALKAANEDVQMRS---DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
           YD +K   + V+ R+   ++     +  E L   +G KL  T KPEAL+SRIL  ST+  
Sbjct: 128 YDEIKNTKKVVKTRTIFTEYGTTTDATKEILVLFNGTKLFDTPKPEALISRILEISTQEN 187

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           D++LD F GSGT+ AVA KL+R +IGIEM + +  +   R+  V
Sbjct: 188 DLVLDFFAGSGTTCAVAHKLKRKYIGIEMGEHFERVILPRLKKV 231


>gi|160938499|ref|ZP_02085854.1| hypothetical protein CLOBOL_03397 [Clostridium bolteae ATCC
           BAA-613]
 gi|167771762|ref|ZP_02443815.1| hypothetical protein ANACOL_03134 [Anaerotruncus colihominis DSM
           17241]
 gi|225375443|ref|ZP_03752664.1| hypothetical protein ROSEINA2194_01068 [Roseburia inulinivorans DSM
           16841]
 gi|239623005|ref|ZP_04666036.1| modification DNA methylase [Clostridiales bacterium 1_7_47_FAA]
 gi|158438872|gb|EDP16629.1| hypothetical protein CLOBOL_03397 [Clostridium bolteae ATCC
           BAA-613]
 gi|167666402|gb|EDS10532.1| hypothetical protein ANACOL_03134 [Anaerotruncus colihominis DSM
           17241]
 gi|225212733|gb|EEG95087.1| hypothetical protein ROSEINA2194_01068 [Roseburia inulinivorans DSM
           16841]
 gi|239522584|gb|EEQ62450.1| modification DNA methylase [Clostridiales bacterium 1_7_47FAA]
          Length = 319

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 123/342 (35%), Gaps = 123/342 (35%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPD--HSLVDAVTDSWDK 74
           D II  +++  L +LP +SV      PPY    +  L+ Q+ R D     +D +T+ + +
Sbjct: 7   DTIINRDALYALRELPEESVHCCVTSPPYYALRDYGLDMQIGREDTPEQYIDRLTEVFRE 66

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWV------IGS----YHNIFR----------- 113
                             RRVL+ +GTLW+       G+    YH   +           
Sbjct: 67  L-----------------RRVLRSDGTLWLNIADTYCGTGNKGYHADPKNPKGRNGQQIA 109

Query: 114 -------------------IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
                              +   L+   +++ +DI+W+K NPMP     R    +E +  
Sbjct: 110 KNNRVSGCKQKDLIGIPWLLAFALRADGWYLRSDIIWQKENPMPESVKDRPTRCYEHIFL 169

Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK------------ 202
            + S K     + YDA   A          L P  +   R     G+K            
Sbjct: 170 LTKSKK-----YFYDAAAIAEP--------LAPTTAARYRTGRSAGQKYADEVPGQGKVQ 216

Query: 203 --------------LHPTQK---------------------PEALLSRILVSSTKPGDII 227
                         L PT +                     P  L    + +    G ++
Sbjct: 217 GLNRARSGSYYDEALMPTMRNRRDVWLINTVPYKGGHFAAFPPKLAETCIKAGCPKGGVV 276

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           LDPFFGSGT+GA A++L R +IGIE+  +Y  +A  RI   +
Sbjct: 277 LDPFFGSGTTGAAARQLDRHYIGIEINAEYCALARARIGGTE 318


>gi|19908852|gb|AAM03022.1|AF472611_3 M.BcnIB [Brevibacillus centrosporus]
          Length = 317

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 121/284 (42%), Gaps = 60/284 (21%)

Query: 30  SVLEKLPAKSVDLIFADPPY------NLQLNGQL-------------------YRP---- 60
            +L K+P +S+DL+   PPY      N    G+L                   +RP    
Sbjct: 21  EILRKIPKESIDLLVTSPPYWAKRVYNEDEEGELGSEPTPEEFVKVLADYFDIFRPYIKK 80

Query: 61  DHSLVDAVTDS--------WDKF-------SSFEAYDAFTRAWLLACRRVLKPNGTLWVI 105
           + +L   + D+        W+K+       +SF+         L   +  LK +G L+  
Sbjct: 81  EGNLFVNIGDTFFGSGAGAWNKYLDEEGNTTSFQKERKEKYFTLKPLQPKLKQDGKLYQN 140

Query: 106 GSYHNI-FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
                I  R    +Q+  + + +DI+WRK N +P     RF N +E +       +AK Y
Sbjct: 141 KQLLLIPSRFAIEMQSRGWILRDDIIWRKPNRIPASVKDRFNNTYEHVFHFV---QAKKY 197

Query: 165 TFNYDALK--AANEDVQMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
            F+ D++K   AN  ++   D W I     ++ LR       H    PEAL+   +   +
Sbjct: 198 YFDLDSVKIMGANGKLKNPGDVWDI----NTQPLRGS-----HTATFPEALVDICIKCGS 248

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
               ++ DPF G+GTS  VA++L R FIG E+  ++   + KR 
Sbjct: 249 PKNGLVFDPFMGTGTSWIVARRLNRRFIGSEINPEFYQFSIKRF 292


>gi|162329641|ref|YP_469489.2| DNA-methyltransferase protein (hemagglutinin-associated protein)
           [Rhizobium etli CFN 42]
          Length = 214

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 113/248 (45%), Gaps = 41/248 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           ++ I+ G+ ++++++L   SVD I  DPPY ++   +  R   +  +AV   W K +  E
Sbjct: 5   RNTILYGDCMTLMQRLQGGSVDFILTDPPYLVRYRDRRGRTVANDNNAV---WLKPAFAE 61

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            +            RVLKP         ++++ R     +   F ++  +V+ KS     
Sbjct: 62  MH------------RVLKPGRLAVSFYGWNHVDRFMEAWRKAGFRVVGHLVFVKSYA--- 106

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
              +RF   H    +      AKG     DA   A     +   W            +  
Sbjct: 107 -SSQRFVRYHHEQAYV----LAKG-----DAAPPAQPIADVLP-W------------DYT 143

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G ++HPTQKP   L +I+ + +KPG+++LDPF GSG++   A +  R ++G+E++  +  
Sbjct: 144 GNRMHPTQKPLRPLEQIIRAFSKPGELVLDPFCGSGSTLLAAARSGRDYLGMELEHRHQL 203

Query: 260 IATKRIAS 267
            A+ R+ S
Sbjct: 204 TASLRVHS 211


>gi|298369708|ref|ZP_06981025.1| modification methylase LlaDCHIB [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298282265|gb|EFI23753.1| modification methylase LlaDCHIB [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 90

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 43/62 (69%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPTQKP ALL R +++++  GD+I DPF GSGT+G  A K  R F G E + ++ ++A K
Sbjct: 20  HPTQKPLALLKRCILAASNTGDLIFDPFMGSGTTGVAALKYGRKFCGCEQETEFFELAKK 79

Query: 264 RI 265
           R+
Sbjct: 80  RL 81


>gi|119382877|ref|YP_913933.1| DNA methylase N-4/N-6 domain-containing protein [Paracoccus
           denitrificans PD1222]
 gi|119372644|gb|ABL68237.1| DNA methylase N-4/N-6 domain protein [Paracoccus denitrificans
           PD1222]
          Length = 225

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 102/257 (39%), Gaps = 55/257 (21%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           ++ +I  + +  ++     SVD I  DPPY  +      R   ++ +     W       
Sbjct: 9   RNLVINADCVEAMQAFGTGSVDFILTDPPYVTRFRD---RQGRTVANDDNARW------- 58

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                 R       RVLK  G       ++ +       +   F I+  +V+RK     +
Sbjct: 59  -----LRPAFAQMHRVLKDGGFCVSFYGWNKVDLFVEAWKAAGFRIVGHLVFRKRY-ASS 112

Query: 140 FRGRRFQNAHETLIW-------ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
            R  R+++    L+        A P P    + +                          
Sbjct: 113 ARFLRYEHEQAYLLAKGDPELPAQPVPDVLDFPYT------------------------- 147

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
                  G +LHPTQKP A L R++ + T+PGD++LDPF GSG++ A A  L R ++G+E
Sbjct: 148 -------GNRLHPTQKPVAALRRLIGAFTQPGDLVLDPFSGSGSTLAAAHLLGRDWLGVE 200

Query: 253 MKQDYIDIATKRIASVQ 269
           +   +     +R+A++Q
Sbjct: 201 LDVSHYQTIGRRMAALQ 217


>gi|329114332|ref|ZP_08243094.1| Modification methylase MjaV [Acetobacter pomorum DM001]
 gi|326696408|gb|EGE48087.1| Modification methylase MjaV [Acetobacter pomorum DM001]
          Length = 285

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 125/274 (45%), Gaps = 51/274 (18%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + +I+ G+ +  L+++PA+SVD++   PPYN+ L+ + Y PD    +   D         
Sbjct: 29  QQEIVMGDCLRALKRVPAESVDVVVTSPPYNIGLSYRSY-PDRREEEDYLD--------- 78

Query: 80  AYDAFTRAWLLAC----RRVLKPNGTLW--VIGSYHNI---FRIGTMLQNLNFWILNDIV 130
                   W+L      +R+LK +G+ +  + GS       F +   L++L F + N I 
Sbjct: 79  --------WMLEVAQQLQRILKDDGSFFLNISGSSAQPWLPFELAVRLRDL-FVLQNHIS 129

Query: 131 WRKS-----NPMPNFR---GRRF-QNAHETLIWASPSPKAK------GYTFNYD---ALK 172
           W KS     +   +F+    +RF    HE +   +     +      G  +      A +
Sbjct: 130 WVKSISVGEDSFGHFKPMNSQRFLHRGHEHVFHFTLHGDVRLDRLRAGVPYKDKSNIARR 189

Query: 173 AANEDVQMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
              +D + R D W IP     E +R +  +  HP   P AL  + ++   + G  +LDPF
Sbjct: 190 GHRQDRRCRGDTWFIPY----ETVRGRAEKFDHPGTFPVALPEQCILLHGREGARVLDPF 245

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
            G+GT+   A++L    +G+E+  +Y+ IA  R+
Sbjct: 246 MGTGTTLLAAQRLGCYGLGMELDPEYVAIARARL 279


>gi|149882909|ref|YP_001294846.1| DNA methylase [Burkholderia phage BcepNY3]
 gi|148763560|gb|ABR10543.1| DNA methylase [Burkholderia phage BcepNY3]
          Length = 243

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 108/266 (40%), Gaps = 58/266 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +++ G+ +  + +LPA+SVDL+  D PY    N                 WD        
Sbjct: 9   ELMFGDCLLAMHELPAQSVDLVLCDLPYGTTRN----------------RWDTPLDL--- 49

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGS--YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
              +R W+ A R V KP   + +     +  +     + +    WI     W K+N    
Sbjct: 50  ---SRLWV-AYRHVCKPGAPVLLFAQTPFDKVLGASNLPELRYEWI-----WEKTNATGF 100

Query: 140 FRGRRFQ-NAHET-LIWASPSPKAK---------------GYTFNYDALKAANEDVQMRS 182
              +R    AHE  L++   +P  +               GY+ NY A   ++ D   R 
Sbjct: 101 LNAKRAPLKAHENILVFCDRAPTYRPIKTSGHVRKTSTRLGYSSNYGAQAVSSYDSTERY 160

Query: 183 DWLIPICSGSERLR---NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
              +        LR   +K   KLHPTQKP ALL  ++ +   PG ++LD   G  ++  
Sbjct: 161 PRSV--------LRFASDKQRSKLHPTQKPVALLEYLIRTHAAPGAVVLDNCMGCASTAL 212

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRI 265
            A +   +FIGIE   ++ + A +R+
Sbjct: 213 AAMQAGCAFIGIENDVEHFETAQRRV 238


>gi|304439292|ref|ZP_07399209.1| site-specific DNA-methyltransferase (cytosine-N(4)-specific)
           [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372260|gb|EFM25849.1| site-specific DNA-methyltransferase (cytosine-N(4)-specific)
           [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 321

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 125/323 (38%), Gaps = 98/323 (30%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           II  ++IS L++ P K+ D     PPY    + +  GQ+ R +               S 
Sbjct: 12  IINLDAISALKEFPDKTFDCCITSPPYYGLRDYKAEGQIGREE---------------SP 56

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVI------------------------GSYHNI--- 111
           E Y           +RVLK  GTLWV+                        G   +I   
Sbjct: 57  EEYLNKLIEVFREVKRVLKKEGTLWVVIGDSYAGTRSKKEYKDPKNIEGRSGQKESITEK 116

Query: 112 -------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
                        +++   L+   +++ +DI+W K N MP     R   ++E +   S  
Sbjct: 117 LSGYKAKDLMGIPWQLALKLREDGWYLRSDIIWHKENAMPESCRDRPSRSYEHIFLLS-- 174

Query: 159 PKAKGYTFNYDALKAANEDVQ----MRS----DWLIPICSGSERLRNKDGEKL------- 203
            KA+ Y +N+DA+K   +++     MR+    +  +   +G++R    +  +        
Sbjct: 175 -KARKYFYNFDAMKEPIKEISKKRYMRARGKNNKYLQEGTGAKRQSINEAREYGEYIGDN 233

Query: 204 ---------------------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
                                H    P  L+   + +      +ILDPF GSGT G VA 
Sbjct: 234 VPKFRNNRDIWTINTSAFKGKHYAVFPPKLVELCIKAGCPKKGLILDPFMGSGTVGMVAI 293

Query: 243 KLRRSFIGIEMKQDYIDIATKRI 265
           ++ R +IGI++ +DY  IA +RI
Sbjct: 294 RMDREYIGIDINKDYCQIAKERI 316


>gi|260588436|ref|ZP_05854349.1| DNA (cytosine-5-)-methyltransferase [Blautia hansenii DSM 20583]
 gi|260541310|gb|EEX21879.1| DNA (cytosine-5-)-methyltransferase [Blautia hansenii DSM 20583]
          Length = 230

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 101/248 (40%), Gaps = 47/248 (18%)

Query: 38  KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK 97
           +S+D+I  D PY                      WD   S E        W   CR ++K
Sbjct: 7   ESIDMILCDLPYG----------------TTKCKWDSIISLE------ELWKQYCR-IIK 43

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNLNFWILN-DIVWRKSNPMPNFRGRRF-QNAHETLI-- 153
            NG + +            +L   N  +L  + +W K+    +   ++    AHE L+  
Sbjct: 44  ENGAIVLFAQ----TPFDKVLGASNLKMLRYEWIWEKTQATGHLNAKKMPMKAHENLLVF 99

Query: 154 ---WASPSPK-AKGYT--FNYDALKAANEDVQMRSDWLIPICSGSERLR----------N 197
                + +P+  +G+    +Y        + ++       I  G E +R          +
Sbjct: 100 YKKLPTYNPQMTEGHEPIHSYTKYITTQNNTEIYGKMNKEISGGGETIRYPRSVLTFPSD 159

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K    LHPTQKP AL   ++ + T  GD++LD   GSGT+G   K L R FIGIE ++ Y
Sbjct: 160 KQTCYLHPTQKPLALCEYMVKTYTNEGDLVLDNCMGSGTTGLSCKNLNRRFIGIEKEEKY 219

Query: 258 IDIATKRI 265
            +IA  RI
Sbjct: 220 FEIAKDRI 227


>gi|257081772|ref|ZP_05576133.1| LlaDCHIB [Enterococcus faecalis E1Sol]
 gi|256989802|gb|EEU77104.1| LlaDCHIB [Enterococcus faecalis E1Sol]
          Length = 214

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 100/238 (42%), Gaps = 48/238 (20%)

Query: 42  LIFADPPYNLQLN------GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRV 95
           ++  DPPY ++        G+  R  H+ ++++T+             F R  L    RV
Sbjct: 1   MVIIDPPYLMKQGKSGGAFGRDKRSYHNEIESMTND------------FERKVLDELVRV 48

Query: 96  LKP-NGTLWV----IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
           +K  N  +W     +  Y N F       +L       + W K+NP+P   G+   +   
Sbjct: 49  MKKINLYVWCSKDQLQGYINYFSQKGCTLDL-------LTWHKTNPVPTCNGKYLSDTEY 101

Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
            L +     K  G   +Y   K           ++ P     + L        HPT KP 
Sbjct: 102 LLFFKEKGVKVFG---SYSTKKKF---------YVTPTNKKDKDLYQ------HPTVKPL 143

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            ++  ++++S++  +++LD F GSGT+   A    R FIG E +++Y D+A +RI  V
Sbjct: 144 NIIENLVINSSQENEVVLDCFIGSGTTAVAAINTNRQFIGFEKEKEYFDVAIERIEKV 201


>gi|207093480|ref|ZP_03241267.1| type II restriction enzyme M protein (hsdM) [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 103

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/106 (44%), Positives = 61/106 (57%), Gaps = 6/106 (5%)

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
           LN I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W 
Sbjct: 3   LNLITWQKTNPPPNFSCRYLTHSAEQIIWARKSRKHK-HVFNYEVLKKINNDKQMRDVWN 61

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
            P  +  E+   K     HPTQKP ALL R+L+ ++    +I DPF
Sbjct: 62  FPAIAPWEKANGK-----HPTQKPLALLVRLLLMASDENSLIGDPF 102


>gi|207108433|ref|ZP_03242595.1| type II DNA modification (methyltransferase [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 244

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 52/85 (61%), Gaps = 2/85 (2%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           W IPI   +   R K+ E L  TQKPE LL RI+ +S+    I+LD F GSGT+ AVA K
Sbjct: 48  WNIPIIGSTSTERVKNNENL--TQKPEKLLERIIQASSDENSIVLDFFAGSGTTCAVAHK 105

Query: 244 LRRSFIGIEMKQDYIDIATKRIASV 268
           L+R +IGIEM + +  +   R+  V
Sbjct: 106 LKRKYIGIEMGEHFDSVILPRLKKV 130


>gi|317014763|gb|ADU82199.1| adenine-specific DNA methylase [Helicobacter pylori Gambia94/24]
          Length = 356

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 61/104 (58%), Gaps = 3/104 (2%)

Query: 168 YDALKAANEDVQMRS---DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
           YD +K A + ++ R+   ++     +  E L   +G KL  T KPEALL RIL  STK  
Sbjct: 139 YDEIKNAKKVIKTRTIFTEYGTTTEATKEILALFNGTKLFDTPKPEALLQRILEISTKEN 198

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           D++ D F GSGT+ AVA KL+R +IG+EM + +  +   R+  V
Sbjct: 199 DLVCDFFAGSGTTCAVAHKLKRKYIGVEMGEHFERVILPRLKKV 242


>gi|313888413|ref|ZP_07822081.1| DNA (cytosine-5-)-methyltransferase [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845610|gb|EFR33003.1| DNA (cytosine-5-)-methyltransferase [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 321

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 125/323 (38%), Gaps = 98/323 (30%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           II  ++IS L++ P K+ D     PPY    + +  GQ+ R +               S 
Sbjct: 12  IINLDAISALKEFPDKTFDCCITSPPYYGLRDYKAEGQIGREE---------------SP 56

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVI------------------------GSYHNI--- 111
           E Y           +RVLK  GTLW++                        G   +I   
Sbjct: 57  EEYLNKLIEVFREVKRVLKKEGTLWIVIGDSYAGTRSKKEYKDPKNTEGRSGQKESITEK 116

Query: 112 -------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
                        +++   L+   +++ +DI+W K N MP     R   ++E +   S  
Sbjct: 117 LSGYKAKDLMGIPWQLALKLREEGWYLRSDIIWHKENAMPESCRDRPSRSYEHIFLLS-- 174

Query: 159 PKAKGYTFNYDALKAANEDVQ----MRS----DWLIPICSGSERLRNKDGEKL------- 203
            KA+ Y +N+DA+K   +++     MR+    +  +   +G++R    +  +        
Sbjct: 175 -KARKYFYNFDAMKEPIKEISKKRYMRARGKNNKYLQEGTGAKRQSINEAREYGEYIGDN 233

Query: 204 ---------------------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
                                H    P  L+   + +      +ILDPF GSGT G VA 
Sbjct: 234 VPKFRNNRDIWTINTSAFKGKHYAVFPPKLVELCIKAGCPKKGLILDPFMGSGTVGMVAI 293

Query: 243 KLRRSFIGIEMKQDYIDIATKRI 265
           ++ R +IGI++ +DY  IA +RI
Sbjct: 294 RMDREYIGIDINKDYCQIAKERI 316


>gi|15320575|ref|NP_203418.1| DNA adenine methylase Mox [Myxococcus phage Mx8]
 gi|15281685|gb|AAK94340.1|AF396866_5 DNA adenine methylase Mox [Myxococcus phage Mx8]
 gi|2105127|gb|AAC48900.1| DNA adenine methyltransferase [Myxococcus phage Mx8]
          Length = 258

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 102/258 (39%), Gaps = 44/258 (17%)

Query: 33  EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLAC 92
           + L A+SVD I  DPPY                      WD++            W    
Sbjct: 24  DALQAESVDAIVTDPPYG----------------ETALEWDRWPV---------GWPGLV 58

Query: 93  RRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL 152
           R +LK  G++W  GS+   +       +  + +  D+VWRK N    F   RF+  HE  
Sbjct: 59  RPLLKRTGSMWCFGSFRMWWDKRDEFVSGGWVVAEDVVWRKQN-GSGFATDRFRRVHEQP 117

Query: 153 I--------W------ASPSPKAKGYTFNYDA----LKAANEDVQMRSDWLIPICSGSER 194
           +        W         +  AK  T    A    L A         D    + +    
Sbjct: 118 VHFYRADAAWRDVFHQVPVTMDAKARTVTRRAQPPHLGAIGAHKYTSEDGGPRLMTSVLE 177

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           +RN  G  ++ TQKP AL+  ++ ++  PG ++ D F GSG++        R FIG +++
Sbjct: 178 VRNCHGFAVNETQKPVALVEPLVRNACPPGGLVADFFAGSGSTALACLATGRRFIGCDIR 237

Query: 255 QDYIDIATKRIASVQPLG 272
           +   + A + ++ V PLG
Sbjct: 238 EAQCEAAARELSQVLPLG 255


>gi|319641241|ref|ZP_07995940.1| hypothetical protein HMPREF9011_01537 [Bacteroides sp. 3_1_40A]
 gi|145308108|gb|ABP57294.1| hypothetical protein bst021 [Bacteroides uniformis]
 gi|317387114|gb|EFV67994.1| hypothetical protein HMPREF9011_01537 [Bacteroides sp. 3_1_40A]
          Length = 259

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 101/269 (37%), Gaps = 49/269 (18%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF-- 78
           DKI   + +  + ++P  SVD I AD PY     G L R + S        WD+      
Sbjct: 5   DKIYNMDCLEGMSRMPEGSVDAIIADLPY-----GVLNRGNRSAC------WDRQIPLGP 53

Query: 79  --EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E Y           RR++KP+  + +      IF    ML     W  N +VW+K   
Sbjct: 54  LWEQY-----------RRIIKPDSPIILFAQ--GIFSAHLMLSQPGIWRYN-LVWQKDRV 99

Query: 137 MPNFRGRRFQ-NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
             +    R     HE ++                  +  N    M        C G  +L
Sbjct: 100 TGHLNANRMPLRQHEDILVFYMKQPVYHPQMTPCPPERRNHGRSMTEGSFTNRCYGEMKL 159

Query: 196 -------------------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
                               +K G   HPTQKP AL+  ++ + T  GD +LD   GSGT
Sbjct: 160 VPVRMADNKYPTSVIFIPKEHKTGAFYHPTQKPVALVEYLIRTYTDEGDTVLDNCIGSGT 219

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           +   A +  R +IG E  ++Y DIA  RI
Sbjct: 220 TAIAAIRSGRHYIGFETVKEYCDIAELRI 248


>gi|62632223|gb|AAX89131.1| M2.BstSEI [Geobacillus stearothermophilus]
          Length = 267

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 111/249 (44%), Gaps = 32/249 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV----TDSWDKFSS 77
           KI   + IS L  L  +S+DLI  DP Y+  +N +L      +V       T++   F+ 
Sbjct: 20  KIELNDCISFLNSLKDESIDLIVTDPAYS-GMNNKLKLGKGRIVGEYKQKGTENGKWFAE 78

Query: 78  FEAYDAFTRAWLLACRRVLKPN-GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           FE  +     +L  C+RVLK + G ++++    ++  +G +++   F + N I W K N 
Sbjct: 79  FEDSEENYHLFLQECKRVLKKDTGHIYIMFDSFSLLSLGHLMREY-FDVKNIITWDKINM 137

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
                G  F+  HE +I+A+                  N  ++ RS    P     +R+ 
Sbjct: 138 G---MGHYFRRRHEYIIFAT---------------NGNNRKIRNRS---FPDVWRFKRIH 176

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           +      +PT KP  L   ++ +S + G  + DPF GSG+S   A K    F+G ++  +
Sbjct: 177 HSK----YPTPKPVELFQAMIYASAEEGFTVCDPFLGSGSSAIAAIKNNCRFLGCDIASN 232

Query: 257 YIDIATKRI 265
                 +RI
Sbjct: 233 AFTANVERI 241


>gi|110004952|emb|CAK99283.1| hypothetical n-6 adenine-specific dna methyltransferase protein
           [Spiroplasma citri]
 gi|110005588|emb|CAK99908.1| hypothetical adenine specific dna methyltransferase protein
           [Spiroplasma citri]
          Length = 266

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 123/266 (46%), Gaps = 46/266 (17%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPY--------------NLQLN-GQLYRPDHSLVDAVTD 70
           G+S+ +L+K+P KS+DLI  DPPY              +++ N  ++  P+ S +     
Sbjct: 11  GDSLEILKKIPDKSIDLILTDPPYLYPDIAKKLENKEKHIKYNLKKIQDPNCSNIQYQIR 70

Query: 71  SWDK-------FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
             +         SSF+   ++ + W+   R + KPN  +++       + I     NL F
Sbjct: 71  KRELEFLQGEFISSFDI-PSYFKEWM---RIIKKPNFIIYLSKQQLKDYLIEIENYNLKF 126

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
            +   I+++K+N  P+     ++   E  ++   +P +    +N        +D+Q    
Sbjct: 127 EL---IIYKKTNDAPS--NTIYRKDKELCLYIYKNPISYSNVWN--------QDMQT--- 170

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
            +  I + + +     G   HPT K   L+   +   +K GD +LD F GSGT+    ++
Sbjct: 171 -IYQITNSNNQFI---GNIKHPTVKDINLIKLQINKHSKVGDTVLDCFLGSGTTAIACEQ 226

Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQ 269
           L R +IGIE+ + Y  +A +R+ ++Q
Sbjct: 227 LSRRWIGIEINEKYYKLAKQRLNNIQ 252


>gi|86741041|ref|YP_481441.1| DNA methylase N-4/N-6 [Frankia sp. CcI3]
 gi|86567903|gb|ABD11712.1| DNA methylase N-4/N-6 [Frankia sp. CcI3]
          Length = 330

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 116/322 (36%), Gaps = 87/322 (27%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
           G +  VL  LP  SV  +   PPY  L+  G+   P    ++             AY A 
Sbjct: 20  GQAAQVLRGLPDASVHCVVTSPPYFGLRDYGE---PGQIGLEPTP---------AAYVAR 67

Query: 85  TRAWLLACRRVLKPNGTLWV------------------------------------IGSY 108
                   RRVL P+GT W+                                       Y
Sbjct: 68  LAEVFTEVRRVLHPDGTCWLNLGDSYAGKANGGPSVGLTRRADRAELIPPRRNTTAAAPY 127

Query: 109 HNIF----RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
            ++     R+   LQ+  + + N IVW K+N MP     RF +  ETL   +   ++  Y
Sbjct: 128 KSLLGIPWRVAFALQDAGWTVRNAIVWAKTNAMPESVTDRFASRTETLFLLT---RSARY 184

Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK---------------------- 202
            F+ D ++    D    ++W      G    R ++ E                       
Sbjct: 185 HFDLDPVRETPVDPTGGAEWAQRRKQGVPGRRGRNPESSVTAADRDFAAHQAGRNPGDVW 244

Query: 203 ---------LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
                     H    P  +  R +++   PG ++LDPF GS T+G VA +L R ++GI++
Sbjct: 245 QIPVANFPGAHFAVFPPEIPRRAILTGCPPGGVVLDPFSGSATTGMVALQLGRRYVGIDL 304

Query: 254 KQDYIDIATKRIASVQPLGNIE 275
             DY  +A +     +PL  I+
Sbjct: 305 NPDYHRLALRTRLLERPLPGID 326


>gi|15643096|ref|NP_228139.1| m4C-methyltransferase [Thermotoga maritima MSB8]
 gi|4980829|gb|AAD35415.1|AE001714_6 m4C-methyltransferase [Thermotoga maritima MSB8]
          Length = 329

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 113/280 (40%), Gaps = 69/280 (24%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           DK+I+G++  VL+K+P  S+ L+   PPYN+   G+ Y  D +L              + 
Sbjct: 76  DKVIEGDAREVLKKIPDCSIHLMVTSPPYNV---GKEYDEDMTL--------------DE 118

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT------------MLQNLNFWILND 128
           Y  F    +    RVL     +W   +  N+  +G             + + + F I  +
Sbjct: 119 YLEFIEEIMKEVYRVL-----VWGGRACFNVANLGRKPYIPLHAYLIHLFEKIGFLIRGE 173

Query: 129 IVWRKS-----------------NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
           I+W K                  NP+        ++ HE +I  S     +    + +A 
Sbjct: 174 IIWDKGEAVSGSSTAWGSWMSPVNPV-------LRDQHEYIIVMSKGDLKRRKPSDREAK 226

Query: 172 KAANEDVQM---RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
                +  +   RS W  P  S       + G   HP   PE L  R +   T  GD++L
Sbjct: 227 STITREEFLEFTRSVWKFPPESA-----KRVG---HPAPFPEELPYRCIQLYTFKGDVVL 278

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           DPF G GT+   A K  R F+GIE+  +Y+  A +R+  +
Sbjct: 279 DPFAGVGTTCVAAVKTGRHFVGIEINPEYVKKAEERVKDI 318


>gi|2996358|gb|AAC13238.1| adenine DNA methyltransferase homolog [Yersinia pestis KIM 10]
          Length = 213

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 99/239 (41%), Gaps = 43/239 (17%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           +   P  +VD I  DPPY   L G   R   ++    TD W + +  E Y          
Sbjct: 1   MSGFPDNAVDFILTDPPY---LVGFRDRQGRTIAGDKTDEWLQPACHEMY---------- 47

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNFRGRRFQNAHE 150
             RVLK +  +     ++ + R     +N  F ++  +V+ K+      + G R + A+ 
Sbjct: 48  --RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYTSKAAYVGYRHECAYI 105

Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
                 P P+              N+ +  +                  G + HPT+KP 
Sbjct: 106 LAKGRPPLPQ-----------NPLNDVIAWKYS----------------GNRHHPTEKPV 138

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
             L  ++ S T PG I+LDPF GSG++   A +  R +IGIE+ + Y     +R+A+V+
Sbjct: 139 TSLQPLIESFTHPGAIVLDPFAGSGSTCVAALQAGRRYIGIELLEQYHRAGQQRLAAVR 197


>gi|53722104|ref|YP_111089.1| site-specific DNA methyltransferase [Burkholderia pseudomallei
           K96243]
 gi|52212518|emb|CAH38544.1| putative site-specific DNA methyltransferase [Burkholderia
           pseudomallei K96243]
          Length = 291

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 108/255 (42%), Gaps = 36/255 (14%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYN---LQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           D++   +++++   LP  S+D++F DPPY+   L  + +   P    ++  +D+   ++ 
Sbjct: 52  DRLHAMDALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSEKYIN--SDTKTVYTD 109

Query: 78  FE-------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
           FE       A+  +  AWL  CRR LKP G L     +  +  +  ++Q     +    V
Sbjct: 110 FESDNMDQRAWAFWCHAWLSECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILRGVAV 169

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W K+      R   F    E ++WAS               + A  D ++    + P   
Sbjct: 170 WDKTPGRTRPRRGGFAQQAEFVVWAS---------------RGAMRDCEVYLPGVFPC-- 212

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
              RL      K H T+KP   ++R +V     G ++ D F GSGT    A++    +IG
Sbjct: 213 ---RL---PLPKQHVTEKPLD-IAREVVRLVPAGGVVCDLFAGSGTFLVAAREAGLHWIG 265

Query: 251 IEMKQDYIDIATKRI 265
            E    Y  IA  R+
Sbjct: 266 CETNAAYHAIALHRL 280


>gi|163858751|ref|YP_001633049.1| site-specific DNA-methyltransferase [Bordetella petrii DSM 12804]
 gi|163262479|emb|CAP44782.1| site-specific DNA-methyltransferase [Bordetella petrii]
          Length = 257

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 101/254 (39%), Gaps = 36/254 (14%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS----LVDAVTDSWDKFSS- 77
           + +G+ +++L  L     D +  DPPY+     +  R   +    L       W  F+  
Sbjct: 32  LYQGDCLAILPALDGP-FDAVVTDPPYSSGGQSKGNRAGGTGSKYLNSGGESPWPDFAGD 90

Query: 78  ---FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
                AY  ++  WL  C   L   G   V   +  +      LQ   F      VW K+
Sbjct: 91  SKDQRAYLHWSTLWLALCYEKLTAGGLAIVFSDWRQLPVTSDALQGAGFTWRGVGVWDKA 150

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
                ++G  F+   E  +W S     KG               Q+  D      +G  R
Sbjct: 151 ASSRPYKGG-FRAQAEYFVWGS-----KG---------------QLAGD---TYSAGVFR 186

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           ++ + G+KLH   KP  L+  ++ +    G  ILDPF GSGT+G  A    +SF GIE+ 
Sbjct: 187 VQQRPGDKLHQVGKPLPLMDSLVAAV---GPRILDPFMGSGTTGVAALTQGKSFTGIELA 243

Query: 255 QDYIDIATKRIASV 268
             Y  IA  R+ +V
Sbjct: 244 GHYFQIAADRLRTV 257


>gi|86169484|gb|ABC86981.1| MseI methylase [Micrococcus sp. NEB 446]
          Length = 300

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 135/318 (42%), Gaps = 82/318 (25%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYN--------------------LQLNGQLYRP 60
           D I++ +++  ++ LP  S  +I+ DPP+N                    +   GQ Y  
Sbjct: 13  DLIVEADNLDFIQTLPDASFRMIYIDPPFNTGRTQRLQSLKTTRSVTGSRVGFKGQTYDT 72

Query: 61  D----HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
                HS  DA TD W          +F    LL   R+L P+G L++   Y  +     
Sbjct: 73  VKSTLHSYDDAFTDYW----------SFLEPRLLEAWRLLTPDGALYLHLDYREVHYAKV 122

Query: 117 MLQNL--NFWILNDIVWRKSNPMPNFRGR---RFQNAHETLIWASPSPKAKGYTFNYDAL 171
           +L  +      LN+++W       ++  R   ++   H+ ++     P    Y +N    
Sbjct: 123 VLDAMFGRESFLNELIWAY-----DYGARSKSKWPTKHDNILVYVKDPN--NYVWN---- 171

Query: 172 KAANEDVQMRSDWLIPICSGSERL-------------------RNKDGEKLHPTQKPEAL 212
               +DV  R  ++ P     E++                   + + G   + TQKP  +
Sbjct: 172 ---GQDVD-REPYMAPGLVTPEKVALGKLPTDVWWHTIVPPASKERTG---YATQKPVGI 224

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
           + R++ +S+  GD +LD F GSGT+GA A++L R F+ +++  + I +  KR+      G
Sbjct: 225 IRRMIQASSNEGDWVLDFFAGSGTTGAAARQLGRRFVLVDVNPEAIAVMAKRLDD----G 280

Query: 273 NIE--LTVLTGKRTEPRV 288
            ++  +T++   +++PR 
Sbjct: 281 ALDTSVTIVQTPQSDPRT 298


>gi|308062652|gb|ADO04540.1| type IIS restriction enzyme M2 protein (mod) [Helicobacter pylori
           Cuz20]
          Length = 287

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 125/283 (44%), Gaps = 49/283 (17%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL-VDAVTDSWDKFSSFEAYDAFT 85
           +S + + ++P  SVDLI   PPY    N + Y  + +  +   T   +   + E Y+ + 
Sbjct: 9   HSSTNMNEVPDNSVDLIITSPPY---FNIKDYTKNGTQDLQHSTQHVEDLGALEKYEDYL 65

Query: 86  RAWL---LACRRVLKPNGTLW-----------VIGSYHN--IFRIG-----TMLQNLN-- 122
              L   L C R LKPNG L            V+ +++N  IF +      ++L +LN  
Sbjct: 66  LGLLKVWLECYRALKPNGKLCINVPLMPMLKKVLNTHYNRHIFDLHADIQHSILHDLNNT 125

Query: 123 ------FWILNDIVWRKSNP--------MPNFRGRRFQNAHETL--IWASPSPKAKGYTF 166
                  ++L+  +W+++NP         P  R    QN  E +        PK      
Sbjct: 126 LENKPKMFLLDVYIWKRANPTKRLMFGSYPYPRNFYAQNTIEFIGVFVKDGKPKQPTEEQ 185

Query: 167 NYDALKAANEDVQM-RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
              +     E V+  +  W IPI + ++    K     H    P  L  R++   +  GD
Sbjct: 186 KEQSQLTQEEWVEFTKQIWEIPIPNKNDIAFGK-----HAALMPAELARRLIRLYSCVGD 240

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           ++LDPF GSGT+   AK L+R+FIG E+ ++Y  +  +++ ++
Sbjct: 241 VVLDPFSGSGTTLREAKLLKRNFIGYELYENYKPLIEQKLGNL 283


>gi|308185164|ref|YP_003929297.1| putative type III restriction enzyme M protein [Helicobacter pylori
           SJM180]
 gi|308061084|gb|ADO02980.1| putative type III restriction enzyme M protein [Helicobacter pylori
           SJM180]
          Length = 612

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/66 (56%), Positives = 47/66 (71%), Gaps = 1/66 (1%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+ L  T KPEALL RIL  STK  D++LD F GSGT+ AVA K++R +IGIE + DYI
Sbjct: 423 EGQALFDTPKPEALLQRILEISTKENDLVLDFFAGSGTTCAVAHKMKRRYIGIE-QMDYI 481

Query: 259 DIATKR 264
           +  TK 
Sbjct: 482 ETITKE 487


>gi|257792342|ref|YP_003182948.1| DNA methylase N-4/N-6 domain-containing protein [Eggerthella lenta
           DSM 2243]
 gi|257476239|gb|ACV56559.1| DNA methylase N-4/N-6 domain protein [Eggerthella lenta DSM 2243]
          Length = 237

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 110/263 (41%), Gaps = 36/263 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I G+   V+ ++   S   +  DPPY +     ++R      D + D W    +    
Sbjct: 5   EVIAGDMFDVIGRVEPASCRCVLIDPPYMIGTQ-SVHR------DNMIDPWADLMNGAR- 56

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F R  + A R  L  +G +W+  ++  +  I     +  +   + +VW K  P     
Sbjct: 57  --FYREVIDAVRPKLTKDGAMWLFMNWRGLPGIYKASCDAKWLPASCMVWSKDWP---GT 111

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN-EDVQMRSDWLIPICSGSERLRNKDG 200
           G   + +HE  +            +  D  K  N + + +++  L+P             
Sbjct: 112 GDPLRASHELCL-----------LYTCDGFKRPNAKTLDVQTFKLVPT-----------A 149

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            ++H  QKP  LL  +L  +T  GD +LD F GSG++G  A  + R F+GIE      ++
Sbjct: 150 HRVHSAQKPVPLLRMMLDFTTARGDKVLDCFCGSGSTGVAAVSMGRRFVGIEANAAIAEV 209

Query: 261 ATKRIASVQPLGNIELTVLTGKR 283
           A +RI      G + +T   GKR
Sbjct: 210 ARRRIEGEASQGQLFVTSEEGKR 232


>gi|254719905|ref|ZP_05181716.1| phage integrase family protein [Brucella sp. 83/13]
 gi|306838791|ref|ZP_07471623.1| phage integrase family protein [Brucella sp. NF 2653]
 gi|306406127|gb|EFM62374.1| phage integrase family protein [Brucella sp. NF 2653]
          Length = 497

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 50/69 (72%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G +LHPTQKP   L+ ++ + TKP D++LDPF GSG++ A A+ L R +IGIE+ +++  
Sbjct: 422 GNRLHPTQKPVEALAPLIKAFTKPDDLVLDPFCGSGSTLAAAQHLGRDWIGIELDKNHYA 481

Query: 260 IATKRIASV 268
            A KR+AS+
Sbjct: 482 TACKRLASM 490


>gi|303233583|ref|ZP_07320241.1| DNA (cytosine-5-)-methyltransferase [Finegoldia magna BVS033A4]
 gi|302495327|gb|EFL55075.1| DNA (cytosine-5-)-methyltransferase [Finegoldia magna BVS033A4]
          Length = 321

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 125/323 (38%), Gaps = 98/323 (30%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           II  ++IS L++ P K+ D     PPY    + +  GQ+ R +               S 
Sbjct: 12  IINLDAISALKEFPDKTFDCCITSPPYYGLRDYKAEGQIGREE---------------SP 56

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVI------------------------GSYHNI--- 111
           E Y           +RVLK  GTLW++                        G   +I   
Sbjct: 57  EEYLNKLIEVFREVKRVLKKEGTLWIVIGDSYAGTRSKKEYKDPKNTEGRSGQKESITEK 116

Query: 112 -------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
                        +++   L+   +++ +DI+W K N MP     R   ++E +   S  
Sbjct: 117 LSGYKAKDLMGIPWQLALKLREDGWYLRSDIIWHKENAMPESCRDRPSRSYEHIFLLS-- 174

Query: 159 PKAKGYTFNYDALKAANEDVQ----MRS----DWLIPICSGSERLRNKDGEKL------- 203
            KA+ Y +N+DA+K   +++     MR+    +  +   +G++R    +  +        
Sbjct: 175 -KARKYFYNFDAMKEPIKEISKKRYMRARGKNNKYLQEGTGAKRQSINEAREYGEYIGDN 233

Query: 204 ---------------------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
                                H    P  L+   + +      +ILDPF GSGT G VA 
Sbjct: 234 VPKFRNNRDIWTINTSAFKGKHYAVFPPKLVELCIKAGCPKKGLILDPFMGSGTVGMVAI 293

Query: 243 KLRRSFIGIEMKQDYIDIATKRI 265
           ++ R +IGI++ +DY  IA +RI
Sbjct: 294 RMDREYIGIDINKDYCQIAKERI 316


>gi|78356347|ref|YP_387796.1| adenine specific DNA methyltransferase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78218752|gb|ABB38101.1| adenine specific DNA methyltransferase, putative [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 247

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 108/253 (42%), Gaps = 33/253 (13%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQ--LNGQLYRPDHSLVDAVTDSWDKFSSFE--- 79
           +G ++S++  +P +SVD I  DPPY+      GQ  RP   +    +D+  + + F    
Sbjct: 11  RGEALSLIRTMPDESVDAIVTDPPYSSGGLHTGQRQRPP-GVKYQNSDARRRHAEFHGDN 69

Query: 80  ----AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
               ++  +   W+  C RV K   +  V   +  +  +   +Q   +     +VW K +
Sbjct: 70  RDQRSFTLWASLWIAECYRVAKAGASCMVFTDWRQLPAMTDAMQIGGWTWRGIVVWDKPS 129

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
             P      F+   E +++       KG      A +     V   S     I +  +R 
Sbjct: 130 ARPILG--EFRRQCEYVVFG-----VKGRLM--PAHRRCLPGVYRHS-----IIAHQKRR 175

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                   H T+KP  L+  +L   T PG  +LDPF GS T+GA   K  R+FIGIE+  
Sbjct: 176 --------HMTEKPMPLIHDLL-EVTPPGCTVLDPFMGSATTGAACLKTNRNFIGIELSP 226

Query: 256 DYIDIATKRIASV 268
           +Y   A +R+  V
Sbjct: 227 EYFQSACERLELV 239


>gi|227484714|ref|ZP_03915030.1| site-specific DNA-methyltransferase (cytosine-N(4)-specific)
           [Anaerococcus lactolyticus ATCC 51172]
 gi|227237299|gb|EEI87314.1| site-specific DNA-methyltransferase (cytosine-N(4)-specific)
           [Anaerococcus lactolyticus ATCC 51172]
          Length = 321

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 125/323 (38%), Gaps = 98/323 (30%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           II  ++IS L++ P K+ D     PPY    + +  GQ+ R +               S 
Sbjct: 12  IINLDAISALKEFPDKTFDCCITSPPYYGLRDYKAEGQIGREE---------------SP 56

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVI------------------------GSYHNI--- 111
           E Y           +RVLK  GTLW++                        G   +I   
Sbjct: 57  EEYLNKLIEVFREVKRVLKKEGTLWIVIGDSYAGTRSKKEYKDPKNIEGRSGQKESITEK 116

Query: 112 -------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
                        +++   L+   +++ +DI+W K N MP     R   ++E +   S  
Sbjct: 117 LSGYKAKDLMGIPWQLALKLREDGWYLRSDIIWHKENAMPESCRDRPSRSYEHIFLLS-- 174

Query: 159 PKAKGYTFNYDALKAANEDVQ----MRS----DWLIPICSGSERLRNKDGEKL------- 203
            KA+ Y +N+DA+K   +++     MR+    +  +   +G++R    +  +        
Sbjct: 175 -KARKYFYNFDAMKEPIKEISKKRYMRARGNNNKYLQEGTGAKRQSINEAREYGEYIGDN 233

Query: 204 ---------------------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
                                H    P  L+   + +      +ILDPF GSGT G VA 
Sbjct: 234 VPKFRNNRDIWTINTSAFKGKHYAVFPPKLVELCIKAGCPKKGLILDPFMGSGTVGMVAI 293

Query: 243 KLRRSFIGIEMKQDYIDIATKRI 265
           ++ R +IGI++ +DY  IA +RI
Sbjct: 294 RMDREYIGIDINKDYCQIAKERI 316


>gi|156741790|ref|YP_001431919.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156233118|gb|ABU57901.1| DNA methylase N-4/N-6 domain protein [Roseiflexus castenholzii DSM
           13941]
          Length = 329

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 115/285 (40%), Gaps = 71/285 (24%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+    ++++P  S+ LI   PPYNL   G+ Y              +   S E Y 
Sbjct: 25  VFNGDVSDFIKQIPDNSITLIVTSPPYNL---GKAY--------------ENRISIENYL 67

Query: 83  AFTRAWLLACRRVLKPNGTL-WVIGS-------------YHNIFR-IGTMLQNLNFWILN 127
                 +    R+LK +G++ W +G+             Y+ IF+ IG  L+N       
Sbjct: 68  RSQSQLINQLYRILKNDGSICWQVGNFVEDGEVYPLDILYYPIFKEIGMNLRNR------ 121

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR------ 181
            I+WR  + +     +RF   +ET++W + S K   Y FN D+++  ++    R      
Sbjct: 122 -IIWRFGHGL--HASKRFSGRYETILWFTKSDK---YIFNLDSVRVPSKYPGKRHFKGPN 175

Query: 182 ---------------------SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
                                 DW   +        N   + +HP Q P  L+ R +++ 
Sbjct: 176 KGKPSGNPLGKNPSDIWEVLAQDWEEEVWDIPNVKSNHPEKTVHPCQFPIELIERCVLAL 235

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T  GD + DP+ G G+S   A    R  +G E   DY ++A +RI
Sbjct: 236 TNEGDWVFDPYMGVGSSLIAALMHNRRAVGCEKDADYAELARQRI 280


>gi|167821700|ref|ZP_02453380.1| site-specific DNA methyltransferase [Burkholderia pseudomallei 91]
          Length = 235

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 106/249 (42%), Gaps = 36/249 (14%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYN---LQLNGQLYRPDHSLVDAVTDSWDKFSSFE---- 79
           +++++   LP  S+D++F DPPY+   L  + +   P    ++  +D+   ++ FE    
Sbjct: 2   DALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSTKYIN--SDTKTVYTDFESDNM 59

Query: 80  ---AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
              A+  +  AWL  CRR LKP G L     +  +  +  ++Q     +    VW K+  
Sbjct: 60  DQRAWAFWCHAWLSECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILRGVAVWDKTPG 119

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
               R   F    E ++WAS               + A  D ++    + P      RL 
Sbjct: 120 RTRPRRGGFAQQAEFVVWAS---------------RGAMRDCEVYLPGVFPC-----RLP 159

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                K H T+KP   ++R +V     G ++ D F GSGT  A A++    +IG E    
Sbjct: 160 LP---KQHVTEKPLD-IAREVVRLVPAGGVVCDLFAGSGTFLAAAREAGLHWIGCETNAA 215

Query: 257 YIDIATKRI 265
           Y  IA  R+
Sbjct: 216 YHAIALHRL 224


>gi|159899275|ref|YP_001545522.1| DNA methylase N-4/N-6 domain-containing protein [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159892314|gb|ABX05394.1| DNA methylase N-4/N-6 domain protein [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 311

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 126/290 (43%), Gaps = 63/290 (21%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           + +G+ ++ L+ +P++S+D++FADPP+NL   G+ Y     + D + D+         Y 
Sbjct: 28  LYQGDCLNFLQAIPSESIDMVFADPPFNL---GKNY--GKGINDQLLDA--------EYL 74

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            ++ +W+    R++KP G + +      +   G+ L        + I  R     P  RG
Sbjct: 75  EWSYSWISELIRIIKPGGAILLFNLPKWLISYGSYLNQAGMMFRHWIACRMPKAFP--RG 132

Query: 143 RRFQNAHETLIWASPSPKAKGYTFN--YDALKAANEDVQMRSDW-------------LIP 187
           ++   AH  L++ +   K +  TFN  Y  +       +   D+             L+ 
Sbjct: 133 KKLSPAHYGLLYYT---KGEPSTFNKVYIPIPVCRHCGKEIRDYGGHRKKLNPQGLNLMD 189

Query: 188 ICSGSERLRNKDGEKLHPTQK------------PEALLSR----------------ILVS 219
           I    E +   +  + H T +            P    S+                ++  
Sbjct: 190 IFDMPEEVWCDESLEAHSTNQLWTPAEDLWDDIPTVRHSKHKTRGANELAPIMLERLIAL 249

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           +T P D+ILDPF GSGT+   A+KL+R +IGIE+ +  ID A +R+ ++ 
Sbjct: 250 TTNPHDLILDPFGGSGTTYYAAEKLQRRWIGIEIGE--IDPAIQRLQNLH 297


>gi|295090203|emb|CBK76310.1| DNA modification methylase [Clostridium cf. saccharolyticum K10]
          Length = 274

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 110/268 (41%), Gaps = 33/268 (12%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV--DAVTDSWDKF 75
           ++ ++I +G+ + ++ +LP  +V LI  DPPY ++   Q     H ++  DA  D     
Sbjct: 8   DYINQIFQGDCLHLMGELPDGAVSLILTDPPYGIRYQNQFAASPHPVLEGDAGID----- 62

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
                Y+ F R       R+L P+   +    +         L+   F + N +V  K  
Sbjct: 63  -----YERFARE----SYRILAPDSHAYFFTRFDCYPYHYQCLKTAGFAVKNCLVIEKGT 113

Query: 136 --PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ------MRSDWLIP 187
              + + RG  F N  E +I+     KA  +T      K A            R     P
Sbjct: 114 LGGIGDLRGS-FANNSEWVIFCQKGRKAFRHTTLLQNRKKAGTQCHKGRNPSARYKTRFP 172

Query: 188 IC--------SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
            C        +    +  K  +  HPT K    L+ ++  S+ PGD++ D F G+G++  
Sbjct: 173 ACWFGPEYPKATYNSMWQKQHQIFHPTIKNVECLAWLIEISSNPGDLVFDGFMGTGSTAL 232

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIAS 267
              +  R+F+G E+   Y  +A +R+ +
Sbjct: 233 AVLETNRTFLGAEIFPAYWQVAQQRLTA 260


>gi|254885078|ref|ZP_05257788.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides sp.
           4_3_47FAA]
 gi|254837871|gb|EET18180.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides sp.
           4_3_47FAA]
          Length = 267

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 111/268 (41%), Gaps = 48/268 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I   + I  ++ +   SV+ + AD PY     G L R + +        WD+    EA
Sbjct: 5   DNIYNMDCIEGMKLMADGSVNAVIADLPY-----GVLNRSNKAA------HWDRQIPLEA 53

Query: 81  -YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            ++ +        RR+ KP   + +      IF    ML     W  N +VW+K     +
Sbjct: 54  LWEQY--------RRITKPGSPVILFAQ--GIFSARLMLSQPRMWRYN-LVWQKDRVTGH 102

Query: 140 FRGRRFQ-NAHETLI-----------WASPSP---------KAKGYTFN-YDALKAANED 177
               R     HE +I             +P P         K  G+T   Y  +K A   
Sbjct: 103 LNANRMPLRQHEDIIVFYDRQPVYHPQMTPCPPEQRNHRRRKMDGFTNRCYGEMKLAPVR 162

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           V   +D   P    S    +K G   HPTQKP AL+  ++ + T  GD++LD   GSGT+
Sbjct: 163 V---ADDKYPTSVISIPKEHKTGAFYHPTQKPVALIEYLIRTYTNEGDVVLDNCIGSGTT 219

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRI 265
              A +  R +IG E++  Y +IA +RI
Sbjct: 220 AIAAIRTGRHYIGFEIEPAYCEIAGRRI 247


>gi|296122352|ref|YP_003630130.1| DNA methylase N-4/N-6 domain protein [Planctomyces limnophilus DSM
           3776]
 gi|296014692|gb|ADG67931.1| DNA methylase N-4/N-6 domain protein [Planctomyces limnophilus DSM
           3776]
          Length = 269

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 99/250 (39%), Gaps = 28/250 (11%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE--- 79
           +  G+   VL KL    VD +  DPPY     G   + D  L            SF+   
Sbjct: 12  LYHGDLFEVLPKLSGLVVDTLLTDPPYCSGAAGGGAKCDPRLKYCQNGQNCGRVSFDGDN 71

Query: 80  ----AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
               +Y  ++  WL  CRR L+      V   +  +  I   +Q  +F     + W K  
Sbjct: 72  KDSISYGWWSMLWLKLCRRSLRETSYAMVFTDWRQLPTITNAMQGADFIHRGTMAWDKGL 131

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
                     ++  E + W +               K AN     RSD   P   G  R 
Sbjct: 132 ASRAPHKGYIRHQCEFIPWGTLG-------------KCAN-----RSD-TGPF-PGCLRH 171

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           + +  +K H T KP ALL   LV     G ++LDPF GSGT+   A+   R  IGIE+ +
Sbjct: 172 QVRQDDKHHMTGKPTALLLE-LVQICPAGGMVLDPFAGSGTTLVAAQASGRRAIGIELSE 230

Query: 256 DYIDIATKRI 265
            Y +IA KR+
Sbjct: 231 AYCEIAAKRL 240


>gi|318056937|ref|ZP_07975660.1| DNA methylase [Streptomyces sp. SA3_actG]
 gi|318075574|ref|ZP_07982906.1| DNA methylase [Streptomyces sp. SA3_actF]
          Length = 248

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 106/265 (40%), Gaps = 41/265 (15%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD-------------HSLVDAVTDS 71
           +G+++S+L+ LP +SV  +  DPPYN        R               H+L     ++
Sbjct: 7   RGDALSILKNLPDESVHAVITDPPYNSGGRTSAERTSRTARAKYVTGNARHTLRTFPGEN 66

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
            D+     AY A+    L  C R    +    V   +         LQ   +     + W
Sbjct: 67  RDQ----RAYRAWLTDLLTQCYRASVEHAVACVFTDWRQEPTTTDALQMAGWTWQGTMPW 122

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
            K    P   G  F+ + E ++W        G   + D  +          D  +P   G
Sbjct: 123 IKPASRPRRGG--FKQSSEFIVW--------GVKGSLDTTR----------DLYLP---G 159

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
                    +++H TQKP  ++ R LV +     ++LDPF GSGT+G  A +  R F+GI
Sbjct: 160 DYTASQPRKDRIHITQKPIDVM-RTLVRACPEDGVVLDPFTGSGTTGVAALREGRGFVGI 218

Query: 252 EMKQDYIDIATKRIASVQPLGNIEL 276
           E+ + Y  +A  R+A       +EL
Sbjct: 219 ELSEHYATLAETRMARELRQDEVEL 243


>gi|308270591|emb|CBX27203.1| hypothetical protein N47_A12320 [uncultured Desulfobacterium sp.]
          Length = 421

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 116/282 (41%), Gaps = 39/282 (13%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           M ++ S  +N +  S      ++I  +     +++   S+D  FADPPYN++      + 
Sbjct: 20  MKKRTSFEVNNSGES------RLINKDCFEAFKEIRDNSIDFAFADPPYNIK------KK 67

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-------WVIGSYHNIFR 113
            H+  DA+          + Y  +   WL    RV+KP  T+       W++  + +I +
Sbjct: 68  YHNWNDAI--------DIKEYFVWCDKWLDELARVIKPGRTVAVLNIPQWLVRHFQHI-K 118

Query: 114 IGTMLQNLNFWILNDIVWRKSNP-------MPNFRGRRFQNAHETLIWASPSPK----AK 162
                Q+   W    +  RK  P       M     R      E + W +   +     +
Sbjct: 119 SKLDFQSWITWEALGLPVRKIMPAHYGILCMSKGEPRGAVGRIEKINWDTRYYELNTLKQ 178

Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK 222
            Y   +  +K  N       + L  +     RL++      HP Q P  L+ R++   T 
Sbjct: 179 WYCVRHQCIKIRNSIKLTDREELSDLWWDIHRLKHNSKRVDHPCQLPPQLMRRLIGLYTI 238

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            G+ +LDPF G+GT+  +A++L R FIG E+   Y  IA  R
Sbjct: 239 EGECVLDPFNGAGTTTLIAQELGRRFIGFELSGVYHKIALNR 280


>gi|256367688|ref|YP_003108257.1| YcgA [Escherichia coli]
 gi|5103178|dbj|BAA78814.1| ycgA [Plasmid R100]
 gi|38606088|gb|AAR25052.1| YcgA [Escherichia coli]
 gi|228480625|gb|ACQ41953.1| YcgA [Escherichia coli]
          Length = 215

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 99/244 (40%), Gaps = 53/244 (21%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           +   P  +VD I  DPPY   L G   R   ++    TD W + +  E Y          
Sbjct: 1   MATFPGNAVDFILTDPPY---LVGFRDRSGRTIAGDKTDEWLQPACNEMY---------- 47

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNFRGRRFQNAH- 149
             RVLK +  +     ++ + R     +N  F ++  +V+ K+      + G R + A+ 
Sbjct: 48  --RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAYVGYRHECAYI 105

Query: 150 ----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
                  +  +P P   G+ ++                                G + HP
Sbjct: 106 LAKGRPRLPQNPLPDVLGWKYS--------------------------------GNRHHP 133

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ + Y     +R+
Sbjct: 134 TEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRL 193

Query: 266 ASVQ 269
           A+VQ
Sbjct: 194 AAVQ 197


>gi|162450105|ref|YP_001612472.1| hypothetical protein sce1834 [Sorangium cellulosum 'So ce 56']
 gi|161160687|emb|CAN91992.1| hypothetical protein sce1834 [Sorangium cellulosum 'So ce 56']
          Length = 611

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 56/87 (64%), Gaps = 1/87 (1%)

Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           RL +   E++ +PTQKP ALL RI+ SS+K GD++LDPF G GT+   A KL R ++GI+
Sbjct: 336 RLASASTERIGYPTQKPLALLERIIASSSKSGDLVLDPFCGCGTTIEAAHKLGRKWVGID 395

Query: 253 MKQDYIDIATKRIASVQPLGNIELTVL 279
           +    IDI   RI ++ P  +   TV+
Sbjct: 396 ITYLSIDIIKGRIDALSPGSDDMYTVI 422


>gi|297380018|gb|ADI34905.1| Modification methylase [Helicobacter pylori v225d]
          Length = 359

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 3/104 (2%)

Query: 168 YDALKAANEDVQMRS---DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
           YD +K A + ++ R+   ++     +  E L   +G KL  T KPEALL RI+  ST+  
Sbjct: 142 YDEIKNAKKVIKTRTIFTEYGTTTEATKEILALFNGTKLFDTPKPEALLKRIIEISTQEN 201

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           D++LD F GSGT+ AVA K +R +IGIEM + +  +   R+  V
Sbjct: 202 DLVLDFFAGSGTTCAVAHKFKRKYIGIEMGEHFDSVILPRLKKV 245


>gi|42557717|emb|CAF28692.1| putative type II DNA modification methylase [uncultured
           crenarchaeote]
          Length = 289

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 116/279 (41%), Gaps = 42/279 (15%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +++ I  G+  ++LEKLPA S+ L    PPY   ++  ++   +      T    + S+ 
Sbjct: 6   FENSIQTGDCKNILEKLPADSIQLTITSPPYRNAIDYSMHVEGNGYYRGTT----RISTT 61

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVI-------GSYHNI--FRIGTMLQNLNFWILND- 128
           E  +     +     RV +  G   ++       GS   +    +  ++Q    W L++ 
Sbjct: 62  EYLNDMIEIFNNHVFRVTREGGYCCIVIGNEVVNGSILPLPHMLLSNLVQPFGNWSLHEE 121

Query: 129 IVWRKS------------NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
           I+W K             NP P +   R    HE ++         G T   DAL A +E
Sbjct: 122 IIWHKVTGGTNRYGSFVINPYPKYF--RANIMHEFILVLRKGNVKSGRTQRDDALPAKHE 179

Query: 177 DVQMR---SDWLI-PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
           +       S W I P+  G            HP   PE +  R++   +  GD+ILDPF 
Sbjct: 180 EFTKEIANSVWHIAPVPPGFIN---------HPCPFPEEIPYRLMKLYSYEGDVILDPFN 230

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           GSG +  VA    R +IGI++  +Y  +A  R+   +PL
Sbjct: 231 GSGQTTKVAHHFLRGYIGIDIINEYAKLAKGRLHD-EPL 268


>gi|304389705|ref|ZP_07371664.1| DNA methylase RsrI [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304326881|gb|EFL94120.1| DNA methylase RsrI [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 433

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 130/267 (48%), Gaps = 27/267 (10%)

Query: 20  KDKIIKGNSISVLEKLPAK---SVDLIFADPPYN-----LQLNGQLYRPDHSLVDAVTDS 71
           +++I  G ++ V+  L  +   SVD I+ DPP+N     +Q     +R D      V   
Sbjct: 47  ENRIYVGENLQVMSGLLPQYEGSVDCIYIDPPFNSGTDYVQRIRTHHRGDSKRTITVKQY 106

Query: 72  WDKFSSFEAY-DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILND 128
            D++ + +   + + R  LL  RR L P GT+++   +H+   +  ++  +     ++N+
Sbjct: 107 GDRWQTADYLQNLYERLTLL--RRFLSPTGTIFLHCDWHSSAALRLVMDEVFGGSNLINE 164

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV--QMRSDWLI 186
           IVW  ++   + R   F + H+T+++ + +   + Y F+ DA++ A        R +   
Sbjct: 165 IVWAYASGGGSRRA--FGHKHDTILFYARN--RRRYYFDPDAVRVAYNAAIAPKRRELFN 220

Query: 187 P-------ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS-G 238
           P       +   S    + D    +PTQKP  ++ R + ++  PG +++D F GSG++  
Sbjct: 221 PQGMVAPDVWQISRPPNHSDTWVGYPTQKPLEVMQRAIAAACPPGGLVMDCFAGSGSTLV 280

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRI 265
           A A +L R F+GIE     + +A +R+
Sbjct: 281 AAAAQLGRRFLGIERNSLGVHLARRRL 307


>gi|284109435|ref|ZP_06386482.1| DNA methylase N-4/N-6 domain protein [Candidatus Poribacteria sp.
           WGA-A3]
 gi|283829822|gb|EFC34119.1| DNA methylase N-4/N-6 domain protein [Candidatus Poribacteria sp.
           WGA-A3]
          Length = 139

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 71/141 (50%), Gaps = 15/141 (10%)

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI-P 187
           I W K  PMP     R  NA E +   S   K   Y ++  A++       +++ WL+ P
Sbjct: 4   ITWVKKAPMPESVKNRPSNATEEVFLFS---KTANYYYDNQAVREET-GANLKNYWLLGP 59

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
             SG+           HP   P+ L  R ++  T+P D++LDPF GSGT+G VA +L R 
Sbjct: 60  DSSGTP----------HPAVFPKELARRCILLGTRPRDLVLDPFSGSGTTGLVAAELNRR 109

Query: 248 FIGIEMKQDYIDIATKRIASV 268
            + IE+ ++Y+  +  R+ +V
Sbjct: 110 AVLIELNEEYVAHSKTRLDTV 130


>gi|126698701|ref|YP_001087598.1| modification DNA methylase [Clostridium difficile 630]
 gi|115250138|emb|CAJ67959.1| DNA-methyltransferase, cytosine-N4-specific; Tn1549-like,
           CTn4-Orf10 [Clostridium difficile]
          Length = 319

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 128/331 (38%), Gaps = 103/331 (31%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPD--HSLVDAVTDSWDK 74
           D II  ++++ L++LP++SV      PPY    +  L+ Q+ + D     +D +T  + +
Sbjct: 4   DVIINRDALAALKELPSESVHCCVTSPPYYALRDYGLDAQIGQEDTPKQYIDRLTAVFGE 63

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWV-----------IGSY--------------- 108
                              RVL+ +GTLW+            G Y               
Sbjct: 64  LY-----------------RVLRKDGTLWLNIADTYCSTGNKGCYADPKNPKGRTGQRIA 106

Query: 109 HNIFRIGTMLQNL--------------NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
            N   IG   ++L               +++ +DI+W+K NPMP     R    +E +  
Sbjct: 107 RNSRVIGCKQKDLIGIPWLLAFSLREQGWYLRSDIIWQKQNPMPESCKDRPTRCYEHIFL 166

Query: 155 ASPSPKAKGYTFNYDALK------AANEDVQMRSD-----WLIPICSGSERL-RNKDG-- 200
            S   K K Y ++  A+        A    + RS        IP     + L R +DG  
Sbjct: 167 LS---KEKKYYYDAAAIAEPLAPTTAERYRRARSTNSKYTQEIPGQGKVQGLNRPRDGGY 223

Query: 201 --EKLHPTQK---------------------PEALLSRILVSSTKPGDIILDPFFGSGTS 237
             + L PT +                     P  L    +++    G I++DPFFGSGT+
Sbjct: 224 YDDALMPTTRNKRDVWLINTVPYKGAHFAAFPPKLAETCILAGCPKGGIVIDPFFGSGTT 283

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           G  AK L R +IGIE+  +Y  +A  RI   
Sbjct: 284 GFAAKSLDRHYIGIELNAEYCALARARIGGA 314


>gi|298346399|ref|YP_003719086.1| putative site-specific DNA-methyltransferase [Mobiluncus curtisii
           ATCC 43063]
 gi|298236460|gb|ADI67592.1| possible site-specific DNA-methyltransferase
           (cytosine-N(4)-specific) [Mobiluncus curtisii ATCC
           43063]
          Length = 405

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 15/162 (9%)

Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL- 171
           RI      + +++ + I W K    P  +  R     E ++  +     K     Y  L 
Sbjct: 241 RIAQRAAQIGYYVKSTISWCKQATTPEPQQSRVSRNVEYILHLTRERTPKFNKATYLELP 300

Query: 172 -----KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
                + + E  ++   W +P  SG      +DG   H  Q P  L  R +  ST PGD+
Sbjct: 301 SDLGGRQSLESDKLSDFWYLPTSSG------RDG---HGAQFPVQLPGRCIAISTDPGDV 351

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +LDPF G+GT+   AKKL R++IG ++  +Y+  A + +AS+
Sbjct: 352 VLDPFMGAGTTAIAAKKLDRNYIGFDVSAEYLATAERVLASM 393


>gi|282600720|ref|ZP_05979580.2| DNA (cytosine-5-)-methyltransferase [Subdoligranulum variabile DSM
           15176]
 gi|282571522|gb|EFB77057.1| DNA (cytosine-5-)-methyltransferase [Subdoligranulum variabile DSM
           15176]
          Length = 276

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 81/187 (43%), Gaps = 40/187 (21%)

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA------- 170
           L++  +++ NDI+W K NPMP     R    +E +   S   K+K Y F+Y A       
Sbjct: 91  LRDTGWYLRNDIIWMKDNPMPESVKDRCARCYEHIFLFS---KSKKYFFDYKAISEPIAP 147

Query: 171 ---------LKAANEDVQMRSDWLIPICSGSER------------LRNK-DGEKL----- 203
                    +K  N+  +       P      R            LRNK D  K+     
Sbjct: 148 ATAERLKRGMKGGNKYGKPVPGQPQPQSINRPREHGEIKDADINPLRNKRDVWKINTVPF 207

Query: 204 ---HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
              H    P  L+   L++    G ++LDPF GSGT+G VA ++ R F+GIE+   Y ++
Sbjct: 208 KGGHYAAYPPKLVETCLLAGCPEGGVVLDPFMGSGTTGMVAAQMGRHFVGIELNPAYTEL 267

Query: 261 ATKRIAS 267
           A KRI  
Sbjct: 268 AYKRIGG 274


>gi|297380549|gb|ADI35436.1| Modification methylase [Helicobacter pylori v225d]
          Length = 287

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 125/283 (44%), Gaps = 49/283 (17%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL-VDAVTDSWDKFSSFEAYDAFT 85
           +S + + ++P  SVDLI   PPY    N + Y  + +  +   T   +   + E Y+ + 
Sbjct: 9   HSSTNMNEVPDNSVDLIITSPPY---FNIKDYTKNGTQDLQHSTQHVEDLGALEKYEDYL 65

Query: 86  RAWL---LACRRVLKPNGTLW-----------VIGSYHN--IFRIG-----TMLQNLN-- 122
              L   + C R LKPNG L            V+ +++N  IF +      ++L +LN  
Sbjct: 66  LGLLKVWIECYRALKPNGKLCINVPLMPMLKKVLNTHYNRHIFDLHADIQHSILHDLNNT 125

Query: 123 ------FWILNDIVWRKSNP--------MPNFRGRRFQNAHETL--IWASPSPKAKGYTF 166
                  ++L+  +W+++NP         P  R    QN  E +        PK      
Sbjct: 126 LENKPKMFLLDVYIWKRANPTKRLMFGSYPYPRNFYAQNTIEFIGVFVKDGKPKQPTEEQ 185

Query: 167 NYDALKAANEDVQM-RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
              +     E V+  +  W IPI + ++    K     H    P  L  R++   +  GD
Sbjct: 186 KEQSQLTQEEWVEFTKQIWEIPIPNKNDIAFGK-----HAALMPAELARRLIRLYSCVGD 240

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           ++LDPF GSGT+   AK L+R+FIG E+ ++Y  +  +++ ++
Sbjct: 241 VVLDPFSGSGTTLREAKLLKRNFIGYELYENYKPLIEQKLGNL 283


>gi|126179572|ref|YP_001047537.1| DNA methylase N-4/N-6 domain-containing protein [Methanoculleus
           marisnigri JR1]
 gi|125862366|gb|ABN57555.1| DNA methylase N-4/N-6 domain protein [Methanoculleus marisnigri
           JR1]
          Length = 284

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 108/287 (37%), Gaps = 72/287 (25%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           + I  + +LPA SVD+I   PPYN+   G+ Y           +S+D     E Y  +  
Sbjct: 20  DCIEGMRRLPAGSVDVIVTSPPYNI---GKDY-----------NSYDDRKPREDYLGWLA 65

Query: 87  AWLLACRRVLKPNGTL-----------WVIGSYHNIFRIGTMLQNLNFW----------- 124
            +     RVL  +G+            W+       FR    LQN+  W           
Sbjct: 66  EFAAGAARVLADDGSFFLNIGGKPRDPWIPFDAVQRFRPHFELQNVIHWVKSIAIEKADM 125

Query: 125 -----ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL-------- 171
                I  DI      P+ +   R     HE +   +     KG     D L        
Sbjct: 126 GGYENITGDIAVGHYQPVNS--ARYLSQCHEHIFHFT-----KGGDVALDKLGVGVPYQD 178

Query: 172 -------KAANEDVQMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSR-ILVSSTK 222
                  KAA  D++ R + W IP        R     + HPT  PE L    I +   +
Sbjct: 179 KSNIGRWKAAERDLRDRGNTWFIP-------YRTIRSSRPHPTSFPEKLPEMCIRLHGCR 231

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           PG ++LDPF G G++   A  L   +IG E+  +Y +IA  RIA  +
Sbjct: 232 PGMLVLDPFMGIGSTALAAIALGADYIGFEIDPEYREIAESRIAGAR 278


>gi|332653193|ref|ZP_08418938.1| DNA (cytosine-5-)-methyltransferase [Ruminococcaceae bacterium D16]
 gi|332518339|gb|EGJ47942.1| DNA (cytosine-5-)-methyltransferase [Ruminococcaceae bacterium D16]
          Length = 240

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 108/252 (42%), Gaps = 31/252 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY------NLQLNGQLYRPDHSLVDAVTDSWDKF 75
           +II G+++ VL +    + D +  DPPY        + N    +   S+ ++    +D  
Sbjct: 6   EIIHGDALKVLREFAPNTFDAVITDPPYASGGRTQAEKNKSTDKKYSSMGESAPPPFDGD 65

Query: 76  SSFE-AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
           S  + ++  +   WL   R+V KP   + +   +  +      LQ   +      VW K 
Sbjct: 66  SKDQRSWTRWAAEWLYDARKVCKPGAPVCMFIDWRQLPAATDALQWAGWIWRGTAVWDKG 125

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N  P  +GR F+   E ++W S                  N D+ +     +P   G  +
Sbjct: 126 NSRPQ-KGR-FRQQAEYIVWGS------------------NGDMPISRP--VPCLPGVFK 163

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
             N    ++H T+KP  L+ R +V  T+PG  ILDPF GSG++   A     S  GIE+ 
Sbjct: 164 YGNPQ-NRIHLTEKPLQLM-RDVVKITEPGGRILDPFAGSGSTVLAAVLEGYSATGIEVT 221

Query: 255 QDYIDIATKRIA 266
             Y  ++ +RIA
Sbjct: 222 DAYAALSKERIA 233


>gi|266622751|ref|ZP_06115686.1| DNA (cytosine-5-)-methyltransferase [Clostridium hathewayi DSM
           13479]
 gi|288865516|gb|EFC97814.1| DNA (cytosine-5-)-methyltransferase [Clostridium hathewayi DSM
           13479]
          Length = 318

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 123/324 (37%), Gaps = 93/324 (28%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW-DKFSSFE 79
           DKI  G+S+ VL+ LP   +D     PPY            ++L D  TD    + ++ E
Sbjct: 6   DKIYCGDSLQVLQTLPDNCLDCCVTSPPY------------YALRDYGTDGQIGREATPE 53

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWV----------------------------IGSYHNI 111
            Y +   A     +RVL P GT W+                            +   H  
Sbjct: 54  EYVSRITAVFHEVKRVLTPEGTCWLNIADTYCGTGSKADHQDPKYPKGRNGQQVAVNHRA 113

Query: 112 ------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
                       + +   L+   +++ + I+W K N MP     R    +E +   +   
Sbjct: 114 PGCKPKDLIGIPWLVALALRGDGWYLRSSIIWHKGNAMPESTRDRPTRCYEYVFLLT--- 170

Query: 160 KAKGYTFNYDALK---AANEDVQMRSD--------WLIPICSGSERL---RNKDG---EK 202
           K+K Y +++ A+    A    V+++S           +P  +  +++   R K     E 
Sbjct: 171 KSKKYYYDWQAVAEPIAPTTAVRLKSGVGKGNKYAATVPGQNQPQKINRPRRKGAYTDEM 230

Query: 203 LHPTQK--------------------PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           + P +                     P  L    +++    G I+LDPF GSGT+ A AK
Sbjct: 231 ISPVRSRRNVWQINTASYRGGHFAAFPPKLAETCILAGCPVGGIVLDPFLGSGTTAAAAK 290

Query: 243 KLRRSFIGIEMKQDYIDIATKRIA 266
            L R ++GIE+  +Y  +A +RI 
Sbjct: 291 SLSRRYVGIEINPEYCTLAKQRIG 314


>gi|251779709|ref|ZP_04822629.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243084024|gb|EES49914.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 260

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 107/265 (40%), Gaps = 47/265 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I  G+ + V+  +  KS+D+I  D PY                      WD   + E 
Sbjct: 5   NNIYLGDCLEVMADIKDKSIDMILCDLPYG----------------TTRCKWDSVINLE- 47

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN-DIVWRKSNPMPN 139
                + W   CR V+K NG + +            +L + N  +L  + +W K+    +
Sbjct: 48  -----KLWEHYCR-VIKDNGAIVLFAQ----TPFDKVLGSSNLEMLRYEWIWEKTQATGH 97

Query: 140 FRGRRF-QNAHET-LIWASPSP-----KAKGY--TFNYDALKAANEDVQMRSDWLIPICS 190
              ++    AHE  L++    P     K  G+     Y    A   + ++  +    I  
Sbjct: 98  LNAKKMPMKAHENILVFYKNLPVYNPQKTVGHAPVNTYTKYIATQNNSELYGELSKEISG 157

Query: 191 GSERLR----------NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           G    R          +K  E LHPTQKP  LL  ++ + T  G+ +LD   GSG++   
Sbjct: 158 GGNTERYPRSVQIFSSDKQKEHLHPTQKPVKLLEYLIKTYTNKGETVLDNCIGSGSTAVA 217

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRI 265
           A  + R+FIGIE +  Y +IA  R+
Sbjct: 218 AININRNFIGIEKEFKYYEIALNRL 242


>gi|315657003|ref|ZP_07909888.1| DNA methylase N-4/N-6 domain protein [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492395|gb|EFU82001.1| DNA methylase N-4/N-6 domain protein [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 432

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 133/283 (46%), Gaps = 43/283 (15%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYN-----LQLNGQLYR 59
           A++ N+N I+        G ++ V+  L  +   SVD I+ DPP+N     +Q     +R
Sbjct: 42  AVSGNENRIY-------VGENLQVMSGLLPQYEGSVDCIYIDPPFNSGTDYVQRIRTHHR 94

Query: 60  PDHSLVDAVTDSWDKFSSFE-AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
            D      V    D++ + +   + + R  LL  R+ + P GT+++   +H+   +  ++
Sbjct: 95  GDSKRTITVKQYGDRWQTADYIQNLYERLTLL--RQFMSPTGTIFLHCDWHSSAALRLVM 152

Query: 119 QNL--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA-- 174
             +     ++N+IVW  ++   + R   F + H+T+++ +     + Y F+ DA++ A  
Sbjct: 153 DEVFGGSNLINEIVWAYASGGGSRRA--FGHKHDTILFYARD--RRRYYFDPDAVRVAYN 208

Query: 175 -----------NEDVQMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK 222
                      N    +  D W IP         + D    +PTQKP  ++ R + ++  
Sbjct: 209 AAISPKRRKLFNPQGMVAPDVWQIP-----RPPNHSDTWVGYPTQKPLEVMQRAIDAACP 263

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           PG +++D F GSG++   A +L R F+GIE     + +A +R+
Sbjct: 264 PGGLVMDCFAGSGSTLVAAAQLGRRFLGIERNSLGVHLARRRL 306


>gi|109946810|ref|YP_664038.1| type IIS restriction enzyme M1 protein fragment 2 [Helicobacter
           acinonychis str. Sheeba]
 gi|109714031|emb|CAJ99039.1| type IIS restriction enzyme M1 protein fragment 2 [Helicobacter
           acinonychis str. Sheeba]
          Length = 171

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 81/159 (50%), Gaps = 28/159 (17%)

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ----M 180
            LN I W K +   N + +R+ +A E++++ S   K   YTFN D ++ A E  +     
Sbjct: 3   FLNFITWVKKDGFANAK-KRYNHAQESILFYSMHKK--NYTFNADEIRIAYESTERIKHA 59

Query: 181 RSDWLIP------------IC-----SGSERLRNKDGEKL----HPTQKPEALLSRILVS 219
           +S  ++             +C       S+R   K+  K+    HP+ KP+AL+ R++ +
Sbjct: 60  QSKGILKNNKRWFPNPNGKLCLDVWEIASQRHVEKENGKILKPKHPSIKPKALIERMIKA 119

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           S+   D+ILD F GSG +  VAK L R+FIG E   +Y+
Sbjct: 120 SSHKNDLILDLFSGSGMTSLVAKSLGRNFIGCESHAEYV 158


>gi|328954138|ref|YP_004371472.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
           11109]
 gi|328454462|gb|AEB10291.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
           11109]
          Length = 298

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 115/274 (41%), Gaps = 61/274 (22%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           ++++II  +S +++E +P  S+ L+   PPYN                 VT  +D+  S 
Sbjct: 50  YENQIIAHSSENMVE-IPDNSLHLMITSPPYN-----------------VTKEYDENLSL 91

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR---------IGTMLQNLNFWILNDI 129
           E Y    R       RVL   G   V  +  N+ R         I TM+ ++ F +  +I
Sbjct: 92  EEYLQLLRMVFSETYRVLVNGGRACV--NIANLGRRPYLPLSDFISTMMIDIGFRMRGEI 149

Query: 130 VWRK----------------SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
           +W K                SNP+        ++ HE ++  S     KG    +   K 
Sbjct: 150 IWNKGAGAGVSMAWGSWQSASNPV-------LRDVHEYIMVFS-----KG---AFMRQKP 194

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFF 232
            N +  +  +  +        +  +  +K+ HP   P  L  R++   T  GD+ILDPF 
Sbjct: 195 ENRENTISREQFMEWTKSVWTMNPESAKKVEHPAPFPVELPYRLIQLYTFKGDVILDPFM 254

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           GSGT+G  A K  R +IG E    Y+ +A +RIA
Sbjct: 255 GSGTTGIAALKADRKYIGYENNPKYVKLAEERIA 288


>gi|291550363|emb|CBL26625.1| DNA modification methylase [Ruminococcus torques L2-14]
          Length = 319

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 126/331 (38%), Gaps = 103/331 (31%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPD--HSLVDAVTDSWDK 74
           D II  +++  L++LP++SV      PPY    +  L+ Q+ + D     +D +T  + +
Sbjct: 4   DVIINRDALCALQELPSESVHCCVTSPPYFALRDYGLDAQIGQEDTPEQYIDRLTSVFRE 63

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWV-----------IGSY-----------HNIF 112
                              RVL+ +GTLW+            G Y             I 
Sbjct: 64  LY-----------------RVLRKDGTLWLNIADTYCGTGNKGGYADPKNPKGRTGQRIA 106

Query: 113 R------------------IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
           R                  +   L+   +++ +DI+W+K NPMP     R    +E +  
Sbjct: 107 RNSRVTGCKQKDLIGIPWLLAFSLREQGWYLRSDIIWQKQNPMPESCKDRPTRCYEHIFL 166

Query: 155 ASPSPKAKGYTFNYDALK------AANEDVQMRSD-----WLIPICSGSERL-RNKDG-- 200
            S   K K Y ++  A+        A    + RS        IP     + L R +DG  
Sbjct: 167 LS---KEKKYYYDAAAIAEPLAPTTAERYRRARSTNSKYTQEIPGQGKVQGLNRPRDGGY 223

Query: 201 --EKLHPTQK---------------------PEALLSRILVSSTKPGDIILDPFFGSGTS 237
             + L PT +                     P  L    +++    G I++DPFFGSGT+
Sbjct: 224 YDDALMPTTRNKRDVWLINTVPYKGAHFAAFPPKLAETCILAGCPKGGIVIDPFFGSGTT 283

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           G  AK L R +IGIE+  +Y  +A  RI   
Sbjct: 284 GFAAKSLDRHYIGIELNAEYCALARARIGGA 314


>gi|315655141|ref|ZP_07908043.1| DNA methylase N-4/N-6 domain protein [Mobiluncus curtisii ATCC
           51333]
 gi|315490622|gb|EFU80245.1| DNA methylase N-4/N-6 domain protein [Mobiluncus curtisii ATCC
           51333]
          Length = 432

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 126/273 (46%), Gaps = 40/273 (14%)

Query: 20  KDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNG-QLYRPDHS-------LVDAV 68
           +++I  G ++ V+  L  +   SVD I+ DPP+N   +  Q  R  H         V   
Sbjct: 47  ENRIYVGENLQVMSGLLPQYEGSVDCIYIDPPFNSGADYVQRIRTHHRGGSKRTITVKQY 106

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWIL 126
            D W      +  + + R  LL  RR + P GT+++   +H+   +  ++  +     ++
Sbjct: 107 GDRWHTADYLQ--NLYERLTLL--RRFMAPTGTIFLHCDWHSSAALRLVMDEVFGGNNLI 162

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA------------ 174
           N+IVW  ++   + R   F + H+T+++ +     + Y F+ DA++ A            
Sbjct: 163 NEIVWAYASGGGSRRA--FGHKHDTILFYARD--RRRYYFDPDAVRVAYNAAISPKRRKL 218

Query: 175 -NEDVQMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
            N    +  D W IP         + D    +PTQKP  ++ R + ++  PG +++D F 
Sbjct: 219 FNPQGMVAPDVWQIP-----RPPNHSDTWVGYPTQKPLEVMQRAIDAACPPGGLVMDCFA 273

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           GSG++   A +L R F+GIE     + +A +R+
Sbjct: 274 GSGSTLVAAAQLGRRFLGIERNSLGVHLARRRL 306


>gi|255690810|ref|ZP_05414485.1| DNA (cytosine-5-)-methyltransferase [Bacteroides finegoldii DSM
           17565]
 gi|260623614|gb|EEX46485.1| DNA (cytosine-5-)-methyltransferase [Bacteroides finegoldii DSM
           17565]
          Length = 257

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 107/274 (39%), Gaps = 45/274 (16%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           DKI   + +  +  +   SVD + AD PY + LN Q           +   W+++     
Sbjct: 5   DKIYHMDCLKGMSLMADGSVDAVIADLPYGV-LNRQNKHAKWDNAIPLEPLWEQY----- 58

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                       RR+ KP+  + + G    +F    ML   N W  N +VW+K     + 
Sbjct: 59  ------------RRITKPDSPIILFGQ--GLFSARLMLSQPNMWRYN-LVWQKDRVTGHL 103

Query: 141 RGRRFQ-NAHETLI-----------WASPSPKAKGYTFN---------YDALKAANEDVQ 179
              R     HE ++             S  P+ K +            Y A+K     + 
Sbjct: 104 NANRMPLRQHEDILVFYKKQPVYHPQMSYKPEKKNHPRGMFKRMTNRCYGAMKPTPSHI- 162

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
             SDW  P          + G   HPTQKP AL   ++ + T  GD +LD   GSGT+  
Sbjct: 163 --SDWKYPTSVIYMPKEFRTGMFYHPTQKPVALAEYLIRTYTNEGDTVLDNCIGSGTTAV 220

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
            A +  R +IG E++  Y +IA +RI      GN
Sbjct: 221 AAIRTGRHYIGFEIEPAYCEIAERRIREEVERGN 254


>gi|225388254|ref|ZP_03757978.1| hypothetical protein CLOSTASPAR_01989 [Clostridium asparagiforme
           DSM 15981]
 gi|225045722|gb|EEG55968.1| hypothetical protein CLOSTASPAR_01989 [Clostridium asparagiforme
           DSM 15981]
          Length = 318

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 123/324 (37%), Gaps = 93/324 (28%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW-DKFSSFE 79
           DKI  G+S+ VL+ LP   +D     PPY            ++L D  TD    + ++ E
Sbjct: 6   DKIYCGDSLQVLQTLPDNCMDCCVTSPPY------------YALRDYGTDGQIGREATPE 53

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWV----------------------------IGSYHNI 111
            Y +   A     +RVL P GT W+                            +   H  
Sbjct: 54  EYVSRITAVFHEVKRVLTPEGTCWLNIADTYCGTGSKADHQDPKYPKGRNGQQVAVNHRA 113

Query: 112 ------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
                       + +   L+   +++ + I+W K N MP     R    +E +   +   
Sbjct: 114 PGCKPKDLIGIPWLVALALRGDGWYLRSSIIWHKGNAMPESTRDRPTRCYEYVFLLT--- 170

Query: 160 KAKGYTFNYDALK---AANEDVQMRSD--------WLIPICSGSERL---RNKDG---EK 202
           K+K Y +++ A+    A    V+++S           +P  +  +++   R K     E 
Sbjct: 171 KSKKYYYDWQAVAEPIAPTTAVRLKSGVGKGNKYAATVPGQNQPQKINRPRRKGAYTDEM 230

Query: 203 LHPTQK--------------------PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           + P +                     P  L    +++    G I+LDPF GSGT+ A AK
Sbjct: 231 ISPVRSRRNVWQINTASYRGGHFAAFPPKLAETCILAGCPVGGIVLDPFLGSGTTAAAAK 290

Query: 243 KLRRSFIGIEMKQDYIDIATKRIA 266
            L R ++GIE+  +Y  +A +RI 
Sbjct: 291 SLSRRYVGIEINPEYCTLAKQRIG 314


>gi|91204082|emb|CAJ71735.1| similar to DNA-methyltransferase (cytosine-specific) [Candidatus
           Kuenenia stuttgartiensis]
          Length = 276

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 119/284 (41%), Gaps = 53/284 (18%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KII G+    L ++P+ SVDLI   PPY           D   +   T   +K+   E 
Sbjct: 8   NKIIYGDIKEKLLQIPSNSVDLIVTSPPY----------ADKRKIIYNTIPAEKY--VEW 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVI-------GSYHN-IFRIGTMLQNLNFWILNDIVWR 132
           +   T       +R+L  NG+  +        G  H  +  +   ++   +  + + +W 
Sbjct: 56  FMPITDE----LKRILNENGSFILNIKEKAENGERHTYVLELILEMKKQGWLWVEEYIWH 111

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY---------DALKAANEDVQMR-- 181
           K N  P     RF++A E  +  +   K K +  +          + LK  +E  +MR  
Sbjct: 112 KKNCYPGKWPNRFRDAWERCLHFTKQKKFKMFQESVMIPIGDWVEERLKNLSERDKMRFE 171

Query: 182 -----------SDWL-----IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
                      S+WL      P  +    L  +   K H    P AL    +   T+ GD
Sbjct: 172 SRSKSGFGKNISNWLNRDKVYP--TNVLHLATECSNKNHSATFPVALPCWFIKLFTEEGD 229

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           ++LDPF GSGT+     +L R +IGIE+K++Y  +A +RI + Q
Sbjct: 230 VVLDPFIGSGTTAIACLQLNRKYIGIEIKEEYYKLAIERIKNTQ 273


>gi|320536136|ref|ZP_08036189.1| DNA (cytosine-5-)-methyltransferase [Treponema phagedenis F0421]
 gi|320147053|gb|EFW38616.1| DNA (cytosine-5-)-methyltransferase [Treponema phagedenis F0421]
          Length = 297

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 11/162 (6%)

Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
           R    +Q   + + +DI+W K N +P     RF N +E +     + K   Y FN DA+K
Sbjct: 138 RFAIEMQERGWLLRDDIIWYKPNRIPASVTDRFNNTYEHVFHFVLNKK---YFFNLDAVK 194

Query: 173 AANEDVQMRSDWLI-PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
               + +M++   + PI   ++ L        H    PE L+ +I++ ++  G  + DPF
Sbjct: 195 VLGANSRMKNPGDVWPI--NTQPLNGN-----HTATFPEKLVEQIVLCASPEGGTVFDPF 247

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
            G+GT+  V  +L R+ +G E+  +Y + A  R    + LG+
Sbjct: 248 LGTGTTWIVCDRLGRNCVGFEINYEYFEFAQNRFDESRGLGD 289


>gi|167900256|ref|ZP_02487657.1| site-specific DNA methyltransferase [Burkholderia pseudomallei
           7894]
          Length = 240

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 107/249 (42%), Gaps = 36/249 (14%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYN---LQLNGQLYRPDHSLVDAVTDSWDKFSSFE---- 79
           +++++   LP  S+D++F DPPY+   L  + +   P    ++  +D+   ++ F+    
Sbjct: 2   DALTLARMLPDASIDMVFTDPPYSSGGLHTSARTRPPSAKYIN--SDTKTVYTDFDSDNM 59

Query: 80  ---AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
              A+  +  AWL  CRR LKP G L     +  +  +  ++Q     +    VW K+  
Sbjct: 60  DQRAWAFWCHAWLSECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILRGVAVWDKTPG 119

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
               R   F    E ++WAS               + A  D  +    + P+     RL 
Sbjct: 120 RTRPRRGGFAQQAEFVVWAS---------------RGAMRDCDVYLPGVFPV-----RLP 159

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                K H T+KP   ++R +V     G ++ D F GSGT  A A++    ++G E    
Sbjct: 160 LP---KQHVTEKPLD-VAREVVRLVPAGGVVCDLFAGSGTFLAAAREAGLHWVGCETNPA 215

Query: 257 YIDIATKRI 265
           Y  IA+ R+
Sbjct: 216 YHAIASSRL 224


>gi|308062654|gb|ADO04542.1| adenine-specific DNA methylase [Helicobacter pylori Cuz20]
          Length = 289

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 61/112 (54%), Gaps = 5/112 (4%)

Query: 159 PKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP--TQKPEALLSRI 216
           P+ K Y  +YDA  A    +      L  I S  + +R   G    P  T KPEALL RI
Sbjct: 67  PRLKIYQSDYDANTAIMSSIFTE---LGSITSAKDEVRKVLGLSASPFDTPKPEALLKRI 123

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +  ST+  D++LD F GSGT+ AVA KL+R +IGIEM + +  +   R+  V
Sbjct: 124 IEISTQENDLVLDFFAGSGTTCAVAHKLKRKYIGIEMGEHFDSVILPRLKKV 175


>gi|281412388|ref|YP_003346467.1| DNA methylase N-4/N-6 domain protein [Thermotoga naphthophila
           RKU-10]
 gi|281373491|gb|ADA67053.1| DNA methylase N-4/N-6 domain protein [Thermotoga naphthophila
           RKU-10]
          Length = 308

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 113/280 (40%), Gaps = 69/280 (24%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           DK+I+G++  VL+K+P +S+ L+   PPYN+   G+ Y  D +L              + 
Sbjct: 55  DKVIEGDAREVLKKIPDRSIHLMVTSPPYNV---GKEYDEDMTL--------------DE 97

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT------------MLQNLNFWILND 128
           Y  F    +    R+L     +W      N+  +G             + + + F I  +
Sbjct: 98  YLEFIEEVMKEVYRIL-----VWGGRVCFNVANLGRKPYIPLHAYLIHLFEKIGFLIRGE 152

Query: 129 IVWRKS-----------------NPMPNFRGRRFQNAHETLIWASPS--PKAKGYTFNYD 169
           I+W K                  NP+        ++ HE +I  S     + K      +
Sbjct: 153 IIWDKGEAVSGSSTAWGSWMSPVNPV-------LRDQHEYIIVMSKGDLKRRKPSDREVE 205

Query: 170 ALKAANEDVQM-RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
           +     E ++  RS W  P  S       + G   HP   PE L  R +   T  GD++L
Sbjct: 206 STITREEFLEFTRSVWKFPPESA-----KRVG---HPAPFPEELPYRCIQLYTFKGDVVL 257

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           DPF G GT+     K  R F+GIE+  +Y+  A +R+  +
Sbjct: 258 DPFAGVGTTCVATVKTGRHFVGIEINPEYVKKAEERVKDI 297


>gi|219851568|ref|YP_002466000.1| DNA methylase N-4/N-6 domain protein [Methanosphaerula palustris
           E1-9c]
 gi|219545827|gb|ACL16277.1| DNA methylase N-4/N-6 domain protein [Methanosphaerula palustris
           E1-9c]
          Length = 294

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 113/247 (45%), Gaps = 39/247 (15%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
            NS F   D  I G + ++    P  SVDLI  DPPY +  + +L+R  +     V D +
Sbjct: 7   HNSTFYHGD-CISGAAAAI----PDNSVDLIITDPPYGINGD-KLHRHYNRNEAFVVDGY 60

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
            +    E Y  F+  W+    RVL+P G+++++  Y N+  I   L+  +   +N I+W+
Sbjct: 61  IEIPQSE-YADFSVNWIREAERVLRPGGSIYIVSGYTNLVDILNALRGTSLTEVNHIIWK 119

Query: 133 KSNPMPNFRGRRFQNAH-ETLIWASPSPKAKGYTFNYDAL--------------KAANED 177
            S  +  F  ++F ++H   L +  P  +    TFN ++                A  ED
Sbjct: 120 YSFGV--FTRQKFVSSHYHILFYEKPGGRR---TFNLESRFGLVEKTGDGRSCNNADRED 174

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           V     W+I       +++NK+       + P  LL++++  S+  GD++ D F G  ++
Sbjct: 175 V-----WVINREYKPSQVKNKN-------ELPFKLLAKMIQYSSNEGDLVADFFLGGFST 222

Query: 238 GAVAKKL 244
             VA  L
Sbjct: 223 AKVAIGL 229


>gi|163855603|ref|YP_001629901.1| adenine DNA methyltransferase protein [Bordetella petrii DSM 12804]
 gi|163259331|emb|CAP41631.1| adenine DNA methyltransferase protein [Bordetella petrii]
          Length = 319

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 82/171 (47%), Gaps = 33/171 (19%)

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
           L+   +++  DIVW K NPMP     R   +HE L   +   K + Y F+ DA++  + D
Sbjct: 148 LRRDGWYLRQDIVWAKPNPMPESVADRCTRSHEYLFLLA---KNRHYYFDQDAIREPSTD 204

Query: 178 VQMRSDWLIPIC--------SGSERLR---NKDGEKL------------------HPTQK 208
            +   + + P+         SG+  LR   +K G +                   H    
Sbjct: 205 PRGPGN-IRPVSAPPGERASSGNANLRGSLHKIGARSTRNRRDVWTIASKPFRGGHFAVF 263

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           P+ L++  +++ ++ GD +LDPF GSGT+   A +L+R FIG E+ + +ID
Sbjct: 264 PDTLVTPCILAGSRAGDTVLDPFMGSGTTAVAALRLQRHFIGCELNRSFID 314


>gi|326626279|gb|EGE32623.1| putative adenine-specific DNA methylase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 226

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 104/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I GN + ++   P ++VD I  DPPY   L G   R   S+    TD W + +  + Y
Sbjct: 3   RLILGNCVDIMSGFPERAVDFILTDPPY---LVGFRDRSGRSIAGDRTDEWLQPACNQMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  L     ++ + R     ++  F ++  +V+ K+ +    +
Sbjct: 60  ------------RVLKKDALLVSFYGWNRVDRFMAAWKSAGFSVVGHLVFTKNYSSKSAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ ++                            
Sbjct: 108 VGYRHECAYVLAKGRPALPQNPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T    I+L PF GS ++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHTNAIVLAPFAGSASTCVAALQAGRRYIGIELME 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+ +VQ
Sbjct: 196 QYHKAEIERLTAVQ 209


>gi|301029835|ref|ZP_07192876.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 196-1]
 gi|299877318|gb|EFI85529.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 196-1]
          Length = 211

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 101/244 (41%), Gaps = 53/244 (21%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           + ++P  ++D I  DPPY   L G   R   ++    TD W + +  E Y          
Sbjct: 1   MARIPDNAIDFILTDPPY---LVGFRDRQGRTIAGDKTDEWLQPACNEMY---------- 47

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNFRGRRFQNAH- 149
             RVLK +  +     ++ + R  +  +N  F ++  +V+ K+      + G R + A+ 
Sbjct: 48  --RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNYTSKAAYVGYRHECAYI 105

Query: 150 ----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
                  +  +P P   G+ ++                                G + HP
Sbjct: 106 LAKGRPRLPQNPLPDVLGWKYS--------------------------------GNRHHP 133

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ + Y     +R+
Sbjct: 134 TEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRL 193

Query: 266 ASVQ 269
            +VQ
Sbjct: 194 TAVQ 197


>gi|103487781|ref|YP_617342.1| DNA methylase N-4/N-6 [Sphingopyxis alaskensis RB2256]
 gi|98977858|gb|ABF54009.1| DNA methylase N-4/N-6 [Sphingopyxis alaskensis RB2256]
          Length = 287

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 119/274 (43%), Gaps = 61/274 (22%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           ++++ +  LP +S+ LI   PPYN+   G+ Y     L + V       S          
Sbjct: 21  DNLAFMRPLPDESMKLIVTSPPYNI---GKAYEQRSPLAEYVKGQAQVISE--------- 68

Query: 87  AWLLACRRVLKPNGTL-WVIGSYHN---IFRIGTML------QNLNFWILNDIVWRKSNP 136
                C R+L   G+L W +G++ +   IF +  +L        LN  + N ++W   + 
Sbjct: 69  -----CVRLLSKGGSLCWQVGNHVDRGEIFPLDMVLYPIFKEHGLN--LRNRVIWHFEHG 121

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK-------------------AANED 177
           +     +R    +ET++W +   K   Y F+ D ++                   + N  
Sbjct: 122 L--HCSKRLSGRYETILWFT---KGDSYHFDVDPIRVPAKYPGKKHFKGPKAGQLSGNPL 176

Query: 178 VQMRSD-WLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
            +   D W+ P       +++   EK  HP Q P  L+ R++++ T+PGD + DP+ G G
Sbjct: 177 GKNPGDVWIFP------NVKSNHVEKTSHPCQFPVELVERLVLALTEPGDAVFDPYMGVG 230

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           +S   A    R   G ++  +Y+DIA  R+ +++
Sbjct: 231 SSVVAAAMHDRIGYGCDVVSEYVDIAWHRVHALR 264


>gi|219849215|ref|YP_002463648.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
           aggregans DSM 9485]
 gi|219543474|gb|ACL25212.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aggregans DSM
           9485]
          Length = 276

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 114/285 (40%), Gaps = 55/285 (19%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++  G+   VL+ LP+ SVDLIF  PPY                D    ++   +  EAY
Sbjct: 8   QLFLGDCRDVLKTLPSDSVDLIFTSPPY---------------ADRRKHTYGGIAP-EAY 51

Query: 82  DAFTRAWLLACRRVLKPNGTLWV-------IGSYHN-IFRIGTMLQNLNFWILNDIVWRK 133
             +         RVLKP+GT  +        G  H  +  +   L+   +    + +W K
Sbjct: 52  VEWFLPIGQELLRVLKPDGTFILNIKEKAEHGERHTYVIELILALRQQGWLWTEEFIWHK 111

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA------------LKAANEDVQMR 181
            N  P     RF++A E LI  +   K K +    +A            LK  ++   +R
Sbjct: 112 KNCYPGKWPNRFRDAWERLIQFN---KTKHFKMFQEAVMVPMGDWADKRLKHLSQTDLIR 168

Query: 182 SDWLIPICSGSE----------------RLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
            +  +    G                   L  +   + H    PEAL    +   T+ GD
Sbjct: 169 DNSRVGSGFGKRVANWVSRDNVYPTNVLHLATETKNRRHSAVFPEALPEWFIKLFTQEGD 228

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
            +LDPF GSGT+  VA+++ R  IGIE+  +Y  +A + IA   P
Sbjct: 229 TVLDPFMGSGTAIKVARRMNRRGIGIEILPEYFALAEEEIAKEAP 273


>gi|269104405|ref|ZP_06157101.1| N6 adenine-specific DNA methyltransferase [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268161045|gb|EEZ39542.1| N6 adenine-specific DNA methyltransferase [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 224

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 111/248 (44%), Gaps = 29/248 (11%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + + K +++S L+++  +S+DL+  DPPY      +       L  +   S D F     
Sbjct: 6   NHVYKSDALSWLKEIQDQSIDLVITDPPYESLEKHRAVGTTTRLKQSKGSSNDWFRILPN 65

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
            D F    L    RVLK N   ++      +F +  + + + F     IVW K       
Sbjct: 66  -DQF-EPLLQEIYRVLKKNSHFYLFCDQETMFIVKPIAEKIGFKFWKPIVWDKCAIG--- 120

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G  +++ +E +++             ++  K    D+           S  + L  K  
Sbjct: 121 MGYHYRSRYEFILF-------------FEKGKRKLNDL-----------SVPDVLEFKRV 156

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            + +PT+KP  LL  ++  S++P DI++DPFFGSG++   A +L+R +IG ++  +    
Sbjct: 157 WRGYPTEKPVELLKTLIAQSSEPNDIVIDPFFGSGSTLVAASQLQRYYIGCDVSDNAHQH 216

Query: 261 ATKRIASV 268
            ++RI+ +
Sbjct: 217 FSQRISEL 224


>gi|329940535|ref|ZP_08289816.1| DNA methylase [Streptomyces griseoaurantiacus M045]
 gi|329300596|gb|EGG44493.1| DNA methylase [Streptomyces griseoaurantiacus M045]
          Length = 251

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 102/250 (40%), Gaps = 31/250 (12%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT--DSWDKFSSFEAYD 82
           +G++++VL  LP   VD +  DPPYN        R   S     T  D+ +  + F   +
Sbjct: 7   QGDALAVLSGLPDGCVDSVITDPPYNSGGRTAKERTTRSAKQKYTSADAKNDLADFTGEN 66

Query: 83  AFTRAW-------LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
              R++       +    R+ K  GT  +   +  +      +Q   +     + W K  
Sbjct: 67  MDQRSYAFWLTQIMTEAHRLTKTGGTALLFTDWRQLPTTTDAIQAAGWLWRGVLAWHKPQ 126

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
             P  +GR  QN  E ++WAS  P           +  +   V +   +     SG++R 
Sbjct: 127 ARPQ-KGRFTQNC-EFIVWASKGP-----------IDGSRNPVYLPGMYSASQPSGAQRR 173

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                   H TQKP  ++ R LV  +  G  +LD   GSG++G  A    R FIG+E  +
Sbjct: 174 --------HITQKPVEVM-RELVKISPEGGTVLDFCAGSGSTGVAALLEGRDFIGVEKTE 224

Query: 256 DYIDIATKRI 265
            Y  IA  R+
Sbjct: 225 HYASIAADRL 234


>gi|21225176|ref|NP_630955.1| DNA methylase [Streptomyces coelicolor A3(2)]
 gi|6941940|emb|CAB72390.1| putative DNA methylase [Streptomyces coelicolor A3(2)]
          Length = 251

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 101/250 (40%), Gaps = 31/250 (12%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT--DSWDKFSSFEAYD 82
           +G++++VL  LP   VD +  DPPYN        R   S     T  D  +  + F   +
Sbjct: 7   QGDALAVLSGLPDGCVDSVITDPPYNSGGRTAKERTSRSAKQKYTSADVKNDLADFTGEN 66

Query: 83  AFTRAW-------LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
              R++       +    R+ K  GT  +   +  +      +Q   +     + W K  
Sbjct: 67  MDQRSYGFWLTQIMTEAHRLTKTGGTALLFTDWRQLPTTTDAIQAAGWLWRGVLAWHKPQ 126

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
             P  +GR  QN  E ++WAS  P           +  +   V +   +     SGS+R 
Sbjct: 127 ARPQ-KGRFTQNC-EFIVWASKGP-----------IDGSRNPVYLPGMYSASQPSGSQRQ 173

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                   H TQKP  ++ R LV  +  G  +LD   GSG++G  A    R FIG+E  +
Sbjct: 174 --------HITQKPVEVM-RELVKISPEGGTVLDFCAGSGSTGVAALLEGRDFIGVEKTE 224

Query: 256 DYIDIATKRI 265
            Y  IA  R+
Sbjct: 225 HYASIAADRL 234


>gi|283784041|ref|YP_003363906.1| prophage DNA adenine methylase [Citrobacter rodentium ICC168]
 gi|282947495|emb|CBG87043.1| putative prophage DNA adenine methylase [Citrobacter rodentium
           ICC168]
          Length = 246

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 99/267 (37%), Gaps = 48/267 (17%)

Query: 22  KIIKGNSI----SVLEKLPAKS--VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           K I GN+      VL+ LPA S   D +  DPPY+   +G  ++ D S+  +     DK+
Sbjct: 3   KQIIGNATLYCGDVLDVLPALSERFDAVITDPPYS---SGGTHKSDRSMAPS-----DKY 54

Query: 76  SSFEAYDAFT------RAWLLACR-------RVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                Y  FT      R+W   C          L P G   V   +  +  +    Q   
Sbjct: 55  VGHTQYAEFTGDNRDQRSWAFWCSMWISHALHRLNPGGYFMVFSDWRQLPALTDAFQAGG 114

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
                 +VW K+          F++  E ++W S            D          + +
Sbjct: 115 VLWRGLVVWDKTQASRAPHTGYFRHQAEYVVWGS--------NGKLDKCPHGGPFPGVIT 166

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
             ++P             EKLH T KP  L++  LV    P   +LDPF GSGT+     
Sbjct: 167 QRVVP------------SEKLHMTAKPVQLMAE-LVKPLAPDAHVLDPFMGSGTTAIPVL 213

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQ 269
                F GIEM   Y DIA  RI   Q
Sbjct: 214 ARGGRFTGIEMTNQYFDIACARIEKAQ 240


>gi|332305440|ref|YP_004433291.1| DNA methylase N-4/N-6 domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172769|gb|AEE22023.1| DNA methylase N-4/N-6 domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 218

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 111/250 (44%), Gaps = 37/250 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYN----LQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           ++ + +++  L+ LPA SVDL+  DPPY      +  G   R  HS     + S D F+ 
Sbjct: 2   RLFQLDAVEWLQSLPANSVDLVITDPPYESLEKHRAKGTTTRLKHS----KSSSNDWFAI 57

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           F   +A   A +    RVLK N   ++      +F I  + +   F     +VW K    
Sbjct: 58  FP--NARFVALVEEIYRVLKNNSHFYLFCDQETMFEIKPLAEAAGFKFWKPLVWDKCAIG 115

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
               G  ++  +E +++             ++  K   +D+ M            + L+ 
Sbjct: 116 ---MGYHYRARYEFILF-------------FEKGKRKLQDLGM-----------PDVLQE 148

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K   + +PT+KP  L+ +++  S+  G +++DPFFGSG +   A+ L R + G ++    
Sbjct: 149 KRVWRGYPTEKPVPLIEKLIGQSSTAGQLVIDPFFGSGATLVAAQNLNREWQGADVAPSA 208

Query: 258 IDIATKRIAS 267
            + A KR+ +
Sbjct: 209 HEHAAKRLKA 218


>gi|281491531|ref|YP_003353511.1| phage DNA methylase [Lactococcus lactis subsp. lactis KF147]
 gi|281375249|gb|ADA64762.1| Phage protein, DNA methylase [Lactococcus lactis subsp. lactis
           KF147]
          Length = 252

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 110/269 (40%), Gaps = 59/269 (21%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   + +  ++++P  SVD+I  D PY                     SWD    FE 
Sbjct: 5   NKIYNEDCLEGMKRIPDGSVDMILCDLPYG----------------TTNCSWDIIIPFE- 47

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                + W     R++K NG + + G+    F     L NL  +   D +W K       
Sbjct: 48  -----KLWK-QYNRIIKDNGAIVLTGA--EPFSSHLRLSNLKLYKY-DWIWDK------V 92

Query: 141 RGRRFQNA-------HETL-IWASPSP-----KAKGYTFNYDALKAANE-DV--QMRSDW 184
           +G  F NA       HE + ++    P     K  G+        + ++ DV  +M+ D+
Sbjct: 93  KGTGFLNAKKQPMRNHEIVSVFYKNQPTYNPQKTSGHNLKTSFRSSEHQTDVYGEMKQDY 152

Query: 185 LIPICSGSERL--------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
                S +ER          +     LHPTQKP AL   ++ + T  GD +LD   GSGT
Sbjct: 153 TY---SSTERYPRSIQIFSTDTQNSSLHPTQKPVALFEYLIKTYTNKGDTVLDNCMGSGT 209

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           +        R+FIG E  ++Y + + +RI
Sbjct: 210 TAVACLNTERNFIGFETNEEYYNKSLQRI 238


>gi|114566374|ref|YP_753528.1| adenine-specific DNA-methyltransferase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|114337309|gb|ABI68157.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 459

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 130/303 (42%), Gaps = 47/303 (15%)

Query: 21  DKIIKGNSISVLEKLP----AKSVDLIFADPPY--NLQLNGQL---YRPDHSLVDAVTDS 71
           ++I +G++++VL  L     A  +DLI+ DPPY  N   N ++   ++     ++ +   
Sbjct: 60  NRIYQGDNLAVLNLLLQQGFAGKIDLIYIDPPYLSNSNYNSRISVEHQGQKYFIERLAFK 119

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL----NFWILN 127
            D+     +Y       L   + +L   G+++V   +H+   +  +L  +    NF  +N
Sbjct: 120 -DRDEDLVSYLQQIYKRLKIMKMLLSEQGSIFVHLDWHSSHYVKILLDEIFSSDNF--IN 176

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
           +I+W           R F   H+ ++W     K K YTFN    +   E    R    + 
Sbjct: 177 EIIWCYGGGSGT--RRHFHRKHDQILWYG---KGKDYTFN-PQYRPYTEGTLQRG---LT 227

Query: 188 ICSGSERLRNKDGEKLH--------------------PTQKPEALLSRILVSSTKPGDII 227
              G +   +K+G  L                     PTQKP ALL RI+ S++ PGD++
Sbjct: 228 RVKGKKYTLHKEGALLQDWWVDINKILSPTARENLKFPTQKPLALLKRIIASASNPGDLV 287

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI--ASVQPLGNIELTVLTGKRTE 285
            D + GSGT+    +++ RS+I  +  +  I  +  R+     +P    EL     +  +
Sbjct: 288 ADFYAGSGTTAEACEEMNRSWISCDCSKLAIQSSRYRLLRKKARPFQITELIEEDNEEQK 347

Query: 286 PRV 288
           P +
Sbjct: 348 PGI 350


>gi|41057660|ref|NP_958114.1| gp10 [Burkholderia phage Bcep43]
 gi|40737647|gb|AAR89300.1| gp10 [Burkholderia phage Bcep43]
          Length = 262

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 108/268 (40%), Gaps = 60/268 (22%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G+ + ++  LP  SVD++  D PY                     +WD    F+A  A  
Sbjct: 14  GDCLDLMRLLPDASVDMVMCDLPYG----------------TTACAWDSVLPFDALWA-- 55

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
                  RR++K  G   V+ +    F    +  N   W   D VW K+ P  NF   + 
Sbjct: 56  -----QYRRIVKSRGA--VVLTAAQPFTSALVASNFE-WFKYDWVWAKNRPT-NFAHAKN 106

Query: 146 QNA--HETLIWASP---------------SPKA-------KGYTFNYDAL----KAANED 177
           +    HE+++  SP               +P+        K  T+N DA+     +  E 
Sbjct: 107 KPMPKHESVLVFSPGTTVHASQFKLRMTYNPQGLTRIEPRKMKTYNTDAMFSKRGSHGEY 166

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
            Q  +++   +   S      D   LHPT KP AL+  ++ + T  GD +LD   GSGT+
Sbjct: 167 TQEFTNYPHSLLEFS-----TDQLNLHPTAKPVALMEYLIRTYTSEGDTVLDNCMGSGTT 221

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           G       R FIG+E   DY  IAT R+
Sbjct: 222 GVACINTGRRFIGMEKDADYALIATGRM 249


>gi|48477657|ref|YP_023363.1| type II restriction modification system, methylation subunit
           [Picrophilus torridus DSM 9790]
 gi|48430305|gb|AAT43170.1| type II restriction modification system, methylation subunit
           [Picrophilus torridus DSM 9790]
          Length = 314

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 124/284 (43%), Gaps = 46/284 (16%)

Query: 4   KNSLAINENQNSIFEWK-DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
           K +   N ++N I E   DKI   +S   ++++P  SV L+   PPYN+   G+LY  D 
Sbjct: 39  KETNTFNFSENKIPESTLDKIFLKSS-EKMDEIPDDSVHLMITSPPYNV---GKLYDKDM 94

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV----IGSYHNI----FRI 114
           SL +              Y  F         RVL P G   +    +G    I    + I
Sbjct: 95  SLAE--------------YREFLVNVWKEVYRVLVPGGRACINIANLGRKPYIPLHAYII 140

Query: 115 GTMLQNLNFWILNDIVWRKSNPMPN---------FRGRRFQNAHETLIWASPSPKAKGYT 165
             M++ L + +  +I+W K N   +          +    +++HE ++  S     +G  
Sbjct: 141 EDMIK-LGYLMRGEIIWNKGNTASSSVAWGTYMSAKNPVLRDSHEYILVFSKKSFTRGVK 199

Query: 166 FNYDALKAANEDVQM-RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
               +     E ++  +S W I   S +     K G   HP   P  L  R++   +   
Sbjct: 200 EGMKSTMTKEEFIEYTKSIWSINAESAT-----KIG---HPAPFPVELPKRLIKLYSFED 251

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +++LDPF GSGT+   A +L R +IG ++ Q+YI+IA  RI ++
Sbjct: 252 EVVLDPFIGSGTTAIAAIELNRHYIGYDIDQEYINIANSRIRAL 295


>gi|208780084|ref|ZP_03247427.1| type III restriction-modification system: methylase [Francisella
           novicida FTG]
 gi|208744088|gb|EDZ90389.1| type III restriction-modification system: methylase [Francisella
           novicida FTG]
          Length = 558

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 48/70 (68%), Gaps = 2/70 (2%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI- 258
           G+ +  T KPE LL RIL  STKP D++LD F GSGT+ AVA K+ R +IGIE + DYI 
Sbjct: 417 GDAVFVTPKPEPLLERILEISTKPNDLVLDFFVGSGTTCAVAHKMGRQYIGIE-QMDYIQ 475

Query: 259 DIATKRIASV 268
           DI  +R+  V
Sbjct: 476 DITVERMKKV 485



 Score = 37.4 bits (85), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 24/138 (17%)

Query: 23  IIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           I+KGN++  L  L  K    V LI+ DPPYN   +   Y  + +    +T          
Sbjct: 173 ILKGNNLLALHSLKKKYAGKVKLIYIDPPYNTGNDSFKYNDNFNHSTWLT---------- 222

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL----NFWILNDIVWRKSN 135
               F +  L   R +L+ +G +++    +    +  ++  +    NF  +N+IVW K  
Sbjct: 223 ----FMKNRLEVARELLRDDGAIFISCDDNEQAYLKILMDEIFGRNNF--INNIVWHKKR 276

Query: 136 PMPNFRGRRFQNAHETLI 153
              N   + F   HE LI
Sbjct: 277 GKDN-SAKYFSITHENLI 293


>gi|164707731|gb|ABY67025.1| M.MjaVI [Methanocaldococcus jannaschii]
          Length = 263

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 101/244 (41%), Gaps = 31/244 (12%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           LP +S+DLI   PPYN+ ++   +              D    +E Y  +T+ WL     
Sbjct: 27  LPNESIDLIVTSPPYNVGIDYNQH--------------DDTIPYEEYLDWTKQWLKKALT 72

Query: 95  VLKPNGTLW-----------VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
           +LK +G L            +   Y +I +I     ++ F     I+W + N        
Sbjct: 73  LLKKDGRLCLNIPLDKNKGGIKPVYADIVKIAL---DVGFKYQTTIIWNEQNISRRTAWG 129

Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
            F +A    + A        Y  ++  L     D+       I   +G      +  +++
Sbjct: 130 SFMSASAPYVIAPVETIVVLYKESWKKLSKGESDITKEE--FIEWTNGLWTFPGESKKRI 187

Query: 204 -HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HP   P  L  R +   +  GD +LDPF GSGT+   A KLRR  IG+E+ + Y ++A 
Sbjct: 188 GHPAPFPLELPKRCIKLFSYVGDTVLDPFLGSGTTAIAAYKLRRKAIGVEIDEKYFELAI 247

Query: 263 KRIA 266
           KR++
Sbjct: 248 KRVS 251


>gi|260878075|ref|ZP_05890430.1| DNA (cytosine-5-)-methyltransferase [Vibrio parahaemolyticus
           AN-5034]
 gi|113200498|gb|ABI32388.1| N6-methyltransferase [Vibrio parahaemolyticus]
 gi|308089843|gb|EFO39538.1| DNA (cytosine-5-)-methyltransferase [Vibrio parahaemolyticus
           AN-5034]
          Length = 233

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 104/238 (43%), Gaps = 39/238 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSFEAY 81
           + + ++++ L  L A SVDL+  DPPY            H  +   T     K SS + +
Sbjct: 16  LFQDDAVTWLSTLDAASVDLLITDPPYE-------SLEKHRKIGTTTRLKVSKASSNQWF 68

Query: 82  DAFT----RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           D F      A L    RVLK +   ++      +F I  + + + F     IVW K +  
Sbjct: 69  DIFPNDRFEALLSEVYRVLKNHSHFYLFCDQETMFVIKPIAEKIGFKFWKPIVWDKVSIG 128

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
               G  ++  HE +++     +                     +D  IP     + L +
Sbjct: 129 ---MGYHYRARHEYILFFEKGKRK-------------------LNDLSIP-----DILTH 161

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           K   + +PT+KP +LL  ++  S++ G++++DPFFGSG++   AK L R F G ++ Q
Sbjct: 162 KRVYRGYPTEKPVSLLEVLVAQSSRDGELVVDPFFGSGSTLVAAKNLNRRFKGNDISQ 219


>gi|294496741|ref|YP_003560434.1| hypothetical protein pKpQIL_p057 [Klebsiella pneumoniae]
 gi|150958448|gb|ABR80476.1| hypothetical protein KPN_pKPN4p07097 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|293339450|gb|ADE44004.1| hypothetical protein [Klebsiella pneumoniae]
          Length = 258

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 103/255 (40%), Gaps = 48/255 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I GN I V+   P ++VDLI  DPPY   L G   R    +   VTD W + ++ E Y
Sbjct: 28  RFILGNCIDVMRGFPDRAVDLIVTDPPY---LVGFKDRQGRQIAGDVTDEWLQPATLEMY 84

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK---SNPMP 138
                       RVLK +  +    S++ + R     +   F+ +  +V+ K   SN   
Sbjct: 85  ------------RVLKKDALMVSFYSWNRVDRFMAAWKAAGFYAVGQLVFTKNYASNRRN 132

Query: 139 NFRGRRFQN-AHE---TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
               R F +  HE    L    P P  K      D L               P    +  
Sbjct: 133 ARARRGFVDYCHEGAYVLAKGRPVPPLKPLP---DVLP-------------FPYTGNTLH 176

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
              K  E L P          ++ S + PG I+LDPF GSG++   A +  R +IGIEM 
Sbjct: 177 PTQKPVEALQP----------LIESFSAPGAIVLDPFAGSGSTCVAAYRAGRRYIGIEML 226

Query: 255 QDYIDIATKRIASVQ 269
             Y    T+R+A++ 
Sbjct: 227 AQYHRAGTERLAAMH 241


>gi|215487725|ref|YP_002330156.1| predicted methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215265797|emb|CAS10205.1| predicted methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 246

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 102/267 (38%), Gaps = 48/267 (17%)

Query: 22  KIIKGNSI----SVLEKLPAKS--VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           K I GN+      VL+ LPA S   D +  DPPY+   +G  ++ D S+  +     DK+
Sbjct: 3   KQIIGNATLYCGDVLDVLPALSERFDAVITDPPYS---SGGTHKSDRSMAPS-----DKY 54

Query: 76  SSFEAYDAFT-------------RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                Y  F+               W+    R+++P G + V   +  +  +  + Q   
Sbjct: 55  VGHTQYAEFSGDNRDQRSWAYWSTLWMSGAARLVRPGGYVMVFSDWRQLPTMTDVFQAGG 114

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
                 +VW K+          F++  E ++W S            D          + +
Sbjct: 115 VLWRGLVVWDKTQASRAPHTGYFRHQAEYVVWGS--------NGKLDKCPHGGPFPGVIT 166

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
             ++P             EKLH T KP  L++  LV    P   +LDPF GSGT+     
Sbjct: 167 QRVVP------------SEKLHMTAKPVQLMAE-LVKPLAPDAHVLDPFMGSGTTAIPVL 213

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQ 269
                F GIEM   Y DIA  R+   Q
Sbjct: 214 ARGGRFTGIEMTNQYFDIACARLEKAQ 240


>gi|317481265|ref|ZP_07940336.1| DNA methylase [Bacteroides sp. 4_1_36]
 gi|316902598|gb|EFV24481.1| DNA methylase [Bacteroides sp. 4_1_36]
          Length = 308

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 118/306 (38%), Gaps = 88/306 (28%)

Query: 32  LEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
           L+ +P+ S+      PPY NL+  G     D   ++   + + +    +  D F      
Sbjct: 13  LKSIPSNSIHCCVTSPPYYNLRDYGH---EDQIGLEKTPEEYIQ----KLVDVFREV--- 62

Query: 91  ACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNLNFW------------------------- 124
             +RV+K +GTLW+ IG  +N    G    N N+W                         
Sbjct: 63  --KRVMKDDGTLWINIGDSYN--GSGKAGNNPNYWSKHTAFGKLANKSTFGYPVKVTSCK 118

Query: 125 ---------------------ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
                                +  DI+W K + MP     R   +HE +   S   K K 
Sbjct: 119 PKDLIGIPWMLAFALRADGWYLRQDIIWSKPSVMPESVKDRCTKSHEYIFLLS---KNKT 175

Query: 164 YTFNYDALK--AANEDVQMRSDWLIPICSGSER------------LRNKDG--------- 200
           Y F+ +A+   A + D  +R   +  + +   R             RNK           
Sbjct: 176 YYFDSNAIAEPATSFDTIIRDRDITKLNNAPRRSKMKGLIHNDYLTRNKRSVWTVATQPL 235

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            + H    PE L+   + +      I+LDPF GSGT+  VA+KL R++IG E+  DY+ +
Sbjct: 236 REAHFATYPEKLIVDCIKAGCPESGIVLDPFMGSGTTAVVARKLDRNYIGFELNPDYVCL 295

Query: 261 ATKRIA 266
           A KRI+
Sbjct: 296 AKKRIS 301


>gi|23752321|ref|NP_705636.1| gp10 [Burkholderia phage Bcep781]
 gi|23507188|gb|AAN38011.1| gp10 [Burkholderia phage Bcep781]
          Length = 262

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 108/268 (40%), Gaps = 60/268 (22%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G+ + ++  LP  SVD++  D PY                     +WD    F+A  A  
Sbjct: 14  GDCLDLMRLLPDASVDMVMCDLPYG----------------TTACAWDSVLPFDALWA-- 55

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
                  RR++K  G   V+ +    F    +  N   W   D VW K+ P  NF   + 
Sbjct: 56  -----QYRRIVKSRGA--VVLTAAQPFTSALVASNFE-WFKYDWVWAKNRPT-NFAHAKN 106

Query: 146 QNA--HETLIWASP---------------SPKA-------KGYTFNYDAL----KAANED 177
           +    HE+++  SP               +P+        K  T+N DA+     +  E 
Sbjct: 107 KPMPKHESVLVFSPGTTVHASQSKLRMTYNPQGLTRIEPRKMKTYNTDAMFSKRGSHGEY 166

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
            Q  +++   +   S      D   LHPT KP AL+  ++ + T  GD +LD   GSGT+
Sbjct: 167 TQEFTNYPHSLLEFS-----TDQLNLHPTAKPVALMEYLIRTYTSEGDTVLDNCMGSGTT 221

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           G       R FIG+E   DY  IAT R+
Sbjct: 222 GVACINTGRRFIGMEKDADYALIATGRM 249


>gi|308095386|ref|ZP_05905466.2| DNA (cytosine-5-)-methyltransferase [Vibrio parahaemolyticus
           Peru-466]
 gi|308125326|ref|ZP_05774521.2| DNA (cytosine-5-)-methyltransferase [Vibrio parahaemolyticus K5030]
 gi|308088761|gb|EFO38456.1| DNA (cytosine-5-)-methyltransferase [Vibrio parahaemolyticus
           Peru-466]
 gi|308111010|gb|EFO48550.1| DNA (cytosine-5-)-methyltransferase [Vibrio parahaemolyticus K5030]
          Length = 220

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 104/238 (43%), Gaps = 39/238 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSFEAY 81
           + + ++++ L  L A SVDL+  DPPY            H  +   T     K SS + +
Sbjct: 3   LFQDDAVTWLSTLDAASVDLLITDPPYE-------SLEKHRKIGTTTRLKVSKASSNQWF 55

Query: 82  DAFT----RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           D F      A L    RVLK +   ++      +F I  + + + F     IVW K +  
Sbjct: 56  DIFPNDRFEALLSEVYRVLKNHSHFYLFCDQETMFVIKPIAEKIGFKFWKPIVWDKVSIG 115

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
               G  ++  HE +++     +                     +D  IP     + L +
Sbjct: 116 ---MGYHYRARHEYILFFEKGKRK-------------------LNDLSIP-----DILTH 148

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           K   + +PT+KP +LL  ++  S++ G++++DPFFGSG++   AK L R F G ++ Q
Sbjct: 149 KRVYRGYPTEKPVSLLEVLVAQSSRDGELVVDPFFGSGSTLVAAKNLNRRFKGNDISQ 206


>gi|153868265|ref|ZP_01998283.1| methyltransferase [Beggiatoa sp. SS]
 gi|152144415|gb|EDN71717.1| methyltransferase [Beggiatoa sp. SS]
          Length = 191

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 62/110 (56%), Gaps = 4/110 (3%)

Query: 160 KAKGYTFNYDALKAAN----EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
           K K + FN D ++       E   MR      + + S      +  + HPTQKPE L+ R
Sbjct: 4   KTKEFIFNLDEIRVPQKYYRERNNMRGANPGDVWTFSHVHYCHENRQNHPTQKPEGLIER 63

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           ++++S+  G  +LDPF GSGT+  V ++L R+ IGIE+  +Y+ ++ +R+
Sbjct: 64  MILASSHEGAQVLDPFLGSGTTLRVCQQLNRACIGIELNPNYVKMSQERL 113


>gi|224025034|ref|ZP_03643400.1| hypothetical protein BACCOPRO_01768 [Bacteroides coprophilus DSM
           18228]
 gi|224018270|gb|EEF76268.1| hypothetical protein BACCOPRO_01768 [Bacteroides coprophilus DSM
           18228]
          Length = 263

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 108/275 (39%), Gaps = 56/275 (20%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           KD+I   + +  ++++  +SVD I AD PY + LN +            +  WDK    E
Sbjct: 4   KDQIYHMDCLKGMKQMADRSVDAIIADLPYGV-LNNR----------NTSAGWDKQLPLE 52

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                 + W    R + KP   + + G    +F    +L     W  N +VW K     +
Sbjct: 53  ------KLWEEYLR-ISKPESPVILFGQ--GMFTARLVLSQPKIWRYN-LVWHKDRVTGH 102

Query: 140 FRGRRFQ-NAHETLI-----------WASPSP---------KAKGYT------FNYDALK 172
               R     HE +I              P P         K +G+T       N   ++
Sbjct: 103 LNANRMPLRQHEDIIVFYRKQPVYHPQMKPCPAEQRNHGRSKTRGFTNRCYGQMNLTPIR 162

Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
            A++           I    E  +   G   HPTQKP ALL  ++ + T  GD +LD   
Sbjct: 163 IADDKYPTSV-----IAIAKEHCK---GCFYHPTQKPVALLEYLIRTYTNEGDTVLDSCI 214

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           GSGT+   A +  R FIG E +Q Y + A  RIA 
Sbjct: 215 GSGTTMVAAIRTGRHFIGFETEQSYFETALLRIAE 249


>gi|15646208|ref|NP_208161.1| adenine-specific DNA methylase [Helicobacter pylori 26695]
          Length = 809

 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 77/172 (44%), Gaps = 36/172 (20%)

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN-FRGRRFQNAHETLIWAS 156
           P+GT W     ++I  +  M QN      N IV+   NPM   +     +    +  W  
Sbjct: 559 PSGTFWR----YSIGTLKDMEQN------NRIVFNGKNPMAKRYLSEVAEGRKSSTFWDG 608

Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
                 GY  N DA     E  Q+                  +G K+    KPEALL RI
Sbjct: 609 SEV---GYNLNGDA-----EIKQLF-----------------NGNKVFNNPKPEALLQRI 643

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           L  STK  D++LD F GSGT+ AVA K++R +IGIEM + +  +   R+  V
Sbjct: 644 LEISTKENDLVLDFFAGSGTTCAVAHKMKRKYIGIEMGEHFESVILPRLKKV 695


>gi|170765736|ref|ZP_02900547.1| DNA methylase [Escherichia albertii TW07627]
 gi|170124882|gb|EDS93813.1| DNA methylase [Escherichia albertii TW07627]
          Length = 195

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 79/153 (51%), Gaps = 26/153 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G+++  L+K+PA SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIQGDALCELKKMPAASVDLIFADPPYNIGKN----------FDGMVENWKE-------D 59

Query: 83  AFTRAWLL----ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WLL     C RVLK  G+++++ S  N+  +    + L F I + I+W   +   
Sbjct: 60  QFI-DWLLEVIAECHRVLKKQGSMYIMNSTENMPFVDLYCRKL-FTIKSRIIWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
             R + + + +E ++       AK YTFN DA+
Sbjct: 118 QAR-KYYGSMYEPILMMVKD--AKNYTFNSDAI 147


>gi|323344838|ref|ZP_08085062.1| DNA methylase N-4/N-6 [Prevotella oralis ATCC 33269]
 gi|323094108|gb|EFZ36685.1| DNA methylase N-4/N-6 [Prevotella oralis ATCC 33269]
          Length = 193

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 33/178 (18%)

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
           L+ L  ++  DI+W K+N MP     R   +HE +   S   K+K Y F+++A++     
Sbjct: 12  LRPLGCYLRQDIIWNKTNAMPESVKDRCTRSHEYIFLLS---KSKTYYFDHEAMREPAVY 68

Query: 178 VQMRSDWLIPICSGSE----------RLRNKDG--------------------EKLHPTQ 207
               S  ++    G +          R + K+                        H   
Sbjct: 69  GPKDSKNILSARYGGKKYTAMPEKFYRTKGKNAYAYTGYKNKRDVWTVSVRPFSSAHFAT 128

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
            PE L++  +++    G I+LDPF GSGT+  VA +  R+FIG E+   YIDIA +R+
Sbjct: 129 FPEKLITPCILAGCPEGGIVLDPFMGSGTTAKVALEHNRNFIGFELNPSYIDIAKERL 186


>gi|85715779|ref|ZP_01046758.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
           Nb-311A]
 gi|85697432|gb|EAQ35311.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
           Nb-311A]
          Length = 426

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 98/227 (43%), Gaps = 12/227 (5%)

Query: 38  KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK 97
           K VD  F DPPYN+++ G           A+       + F ++ A T   L A   V +
Sbjct: 196 KRVDAAFLDPPYNVRIGGHAVAAGSHREFAMASGEMNEAEFRSFLADT---LGAAASVSR 252

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
                +V   + ++  +  +   +    LN  VW KSN      G  +++ HE +     
Sbjct: 253 DGAVHFVCMDWRHMDSVSAVGATVYGACLNLCVWNKSN---AGMGSLYRSKHELVFVYR- 308

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
                G   + + ++         + W     +     R +D   LHPT KP  L++  L
Sbjct: 309 ----VGMAPHLNMVELGKHGRNRTNVWDYASVNSMRGSRRED-LALHPTVKPTGLVADAL 363

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
              T+ GD++LD F GSGT+   A++  R F G+++   Y+D+A +R
Sbjct: 364 KDVTRHGDLVLDLFLGSGTTLIAAERTGRCFRGLDIDPAYVDVAIER 410


>gi|28897168|ref|NP_796773.1| haemagglutinin associated protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|28805377|dbj|BAC58657.1| haemagglutinin associated protein [Vibrio parahaemolyticus RIMD
           2210633]
          Length = 221

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 104/238 (43%), Gaps = 39/238 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSFEAY 81
           + + ++++ L  L A SVDL+  DPPY            H  +   T     K SS + +
Sbjct: 4   LFQDDAVTWLSTLDAASVDLLITDPPYE-------SLEKHRKIGTTTRLKVSKASSNQWF 56

Query: 82  DAFT----RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           D F      A L    RVLK +   ++      +F I  + + + F     IVW K +  
Sbjct: 57  DIFPNDRFEALLSEVYRVLKNHSHFYLFCDQETMFVIKPIAEKIGFKFWKPIVWDKVSIG 116

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
               G  ++  HE +++     +                     +D  IP     + L +
Sbjct: 117 ---MGYHYRARHEYILFFEKGKRK-------------------LNDLSIP-----DILTH 149

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           K   + +PT+KP +LL  ++  S++ G++++DPFFGSG++   AK L R F G ++ Q
Sbjct: 150 KRVYRGYPTEKPVSLLEVLVAQSSRDGELVVDPFFGSGSTLVAAKNLNRRFKGNDISQ 207


>gi|326576689|gb|EGE26596.1| modification methylase MboIB [Moraxella catarrhalis 101P30B1]
          Length = 71

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 47/76 (61%), Gaps = 5/76 (6%)

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
           +K  N D Q +  W +P     E+ + K     HPTQKP  LLSRI++SST+ GD+ILDP
Sbjct: 1   MKKLNGDKQAKDVWRLPAVGSWEKTQGK-----HPTQKPLGLLSRIILSSTQKGDLILDP 55

Query: 231 FFGSGTSGAVAKKLRR 246
           F GSGT+G  A  L R
Sbjct: 56  FSGSGTTGIAATILGR 71


>gi|47092597|ref|ZP_00230385.1| adenine methyltransferase, putative [Listeria monocytogenes str. 4b
           H7858]
 gi|254900839|ref|ZP_05260763.1| hypothetical protein LmonJ_13526 [Listeria monocytogenes J0161]
 gi|47019025|gb|EAL09770.1| adenine methyltransferase, putative [Listeria monocytogenes str. 4b
           H7858]
          Length = 435

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 119/272 (43%), Gaps = 44/272 (16%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQL---NGQLYRPDHS--LVDAVTDSWDKFSSFEAY 81
           N + V + +  K VDL+  DPPYN+ +   N  L +   S  L D +TD        E +
Sbjct: 187 NIVDVQQLMQGKQVDLVITDPPYNVAVESDNKNLEKSGRSSILNDDMTD--------EQF 238

Query: 82  DAFTRAWLLACRRVLKPNGTLWVI--GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           D F      + ++V+  +  ++V    SY   F     L N+   + +  +W K+ P   
Sbjct: 239 DMFLAKVFQSYQKVMAGHAAIYVFHPSSYQIEFENSMKLANIQ--VRSQCIWIKNYPSFG 296

Query: 140 FRGRRFQNAHETLIWA---SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER-- 194
           +   R+Q  HE + +A     SP   G             D +  + W      G E   
Sbjct: 297 WSQYRWQ--HEPVFYAHLKGESPFWYG-------------DRKQTTTWRDHSYLGEEAST 341

Query: 195 ----LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
                R+ +   +HPTQKP  LL+  + +S+K GD I D F GSG++   A++L R    
Sbjct: 342 IWEIARDSNNTYIHPTQKPLDLLAIPMRNSSKKGDTIADFFGGSGSTLLTAEQLGRICYT 401

Query: 251 IEMKQDYIDIATKRIAS---VQPLGNIELTVL 279
           +E+   + D   +R  +   ++P+   +LT +
Sbjct: 402 MELDPKFCDAIKQRFEAYTGIKPVLMQQLTTI 433


>gi|317179829|dbj|BAJ57615.1| Type IIS restriction enzyme M2 protein [Helicobacter pylori F32]
          Length = 287

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 124/283 (43%), Gaps = 49/283 (17%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL-VDAVTDSWDKFSSFEAYDAFT 85
           +S + + ++P  SVDLI   PPY    N + Y  + +  +       +   + E Y+ + 
Sbjct: 9   HSSTNMNEVPDNSVDLIITSPPY---FNIKDYAKNGTQDLQHSAQHVEDLGALEKYEDYL 65

Query: 86  RAWL---LACRRVLKPNGTLW-----------VIGSYHN--IFRIG-----TMLQNLN-- 122
              L   L C R LKPNG L            V+ +++N  IF +      ++L +LN  
Sbjct: 66  LGLLKVWLECYRALKPNGKLCINVPLMPMLKKVLNTHYNRHIFDLHADIQHSILHDLNNT 125

Query: 123 ------FWILNDIVWRKSNP--------MPNFRGRRFQNAHETL--IWASPSPKAKGYTF 166
                  ++L+  +W+++NP         P  R    QN  E +        PK      
Sbjct: 126 LENKPKMFLLDVYIWKRANPTKRLMFGSYPYPRNFYAQNTIEFIGVFVKDGKPKQPTEEQ 185

Query: 167 NYDALKAANEDVQM-RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
              +     E V+  +  W IPI + ++    K     H    P  L  R++   +  GD
Sbjct: 186 KEQSQLTQEEWVEFTKQIWEIPIPNKNDIAFGK-----HAALMPAELARRLIRLYSCVGD 240

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           ++LDPF GSGT+   AK L+R+FIG E+ ++Y  +  +++ ++
Sbjct: 241 VVLDPFSGSGTTLREAKLLKRNFIGYELYENYKPLIEQKLGNL 283


>gi|328912202|gb|AEB63798.1| DNA modification methylase [Bacillus amyloliquefaciens LL3]
          Length = 278

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 122/285 (42%), Gaps = 62/285 (21%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I K + +  L++L  +S+DLI   PPY  +  G+      S+  +   +W    + E 
Sbjct: 9   NEIYKIDCLDGLKELKNESIDLIVTSPPYADRREGEY----KSIKTSEYVNWFIPIAKEL 64

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYH--------NIFRIGTMLQ-NLNFWILNDIVW 131
           Y            RVLKP+G+ ++    H         ++ +   L+  L +  +++  W
Sbjct: 65  Y------------RVLKPSGSFFINIKSHCSKGERELYVYELVIALKKELGWRFVDEFTW 112

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPS------PKAKGYTFNYDALKAAN---------- 175
            K+     F+GR F+N  E +   + S      P A G     ++LK AN          
Sbjct: 113 TKNGVPGRFKGR-FKNGFEPIFHFAKSSEIVFNPYAVGVPMKEESLKRANRKATGLTKNG 171

Query: 176 ---------EDVQMRSDWL------IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
                    E +  RS  L      IP  S    L++K     HP   P  L    + + 
Sbjct: 172 SGFAGMRRNETMVNRSLALPSNHLHIPQKSNQYTLQSK-----HPAVFPVELPEFFIKAF 226

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T  G ++LDPF GSGT+   ++ L R +IG E +  YI+IA +R+
Sbjct: 227 TNEGQVVLDPFMGSGTTAIASEMLGRKWIGFETEAKYIEIANERL 271


>gi|15645980|ref|NP_208160.1| type IIS restriction enzyme M2 protein (mod) [Helicobacter pylori
           26695]
 gi|2314539|gb|AAD08412.1| type IIS restriction enzyme M2 protein (mod) [Helicobacter pylori
           26695]
          Length = 287

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 124/283 (43%), Gaps = 49/283 (17%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL-VDAVTDSWDKFSSFEAYDAFT 85
           +S + + ++P  SVDLI   PPY    N + Y  + +  +       +   + E Y+ + 
Sbjct: 9   HSSTNMNEVPDNSVDLIITSPPY---FNIKDYAKNGTQDLQHSAQHVEDLGALEKYEDYL 65

Query: 86  RAWL---LACRRVLKPNGTLW-----------VIGSYHN--IFRIG-----TMLQNLN-- 122
              L   L C R LKPNG L            V+ +++N  IF +      ++L +LN  
Sbjct: 66  LGLLKVWLECYRALKPNGKLCINVPLMPMLKKVLNTHYNRHIFDLHADIQHSILHDLNNM 125

Query: 123 ------FWILNDIVWRKSNP--------MPNFRGRRFQNAHETL--IWASPSPKAKGYTF 166
                  ++L+  +W+++NP         P  R    QN  E +        PK      
Sbjct: 126 LKNKPKMFLLDVYIWKRANPTKRLMFGSYPYPRNFYAQNTIEFIGVFVKDGKPKQPTEEQ 185

Query: 167 NYDALKAANEDVQM-RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
              +     E V+  +  W IPI + ++    K     H    P  L  R++   +  GD
Sbjct: 186 KEQSQLTQEEWVEFTKQIWEIPIPNKNDIAFGK-----HAALMPAELARRLIRLYSCVGD 240

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           ++LDPF GSGT+   AK L+R+FIG E+ ++Y  +  +++ ++
Sbjct: 241 VVLDPFSGSGTTLREAKLLKRNFIGYELYENYKPLIEQKLGNL 283


>gi|308064158|gb|ADO06045.1| type III R-M system methyltransferase [Helicobacter pylori Sat464]
          Length = 601

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 77/168 (45%), Gaps = 37/168 (22%)

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN-FRGRRFQNAHETLIWAS 156
           P+GT W     ++I  +  M QN      N IV+   NPM   +     +    +  W  
Sbjct: 345 PSGTFW----RYSIGTLKDMEQN------NRIVFNGKNPMAKRYLSEVAEGKKSSTFWDG 394

Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
                 GY  N DA     E  Q+                  +G K+    KPEAL+SRI
Sbjct: 395 SEV---GYNLNGDA-----EIKQLF-----------------NGNKVFNNPKPEALISRI 429

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           L  ST   D++LD F GSGT+ AVA K++R +IGIE + DYI+  TK 
Sbjct: 430 LEVSTNENDLVLDFFAGSGTTCAVAHKMKRRYIGIE-QMDYIETITKE 476


>gi|108563753|ref|YP_628069.1| putative type III restriction enzyme M protein [Helicobacter pylori
           HPAG1]
 gi|107837526|gb|ABF85395.1| putative type III restriction enzyme M protein [Helicobacter pylori
           HPAG1]
          Length = 569

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 126/297 (42%), Gaps = 74/297 (24%)

Query: 23  IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +IKGN++  L  L    AK V  I+ DPPYN                   DS++   +F 
Sbjct: 167 LIKGNNLIALHSLKKKFAKQVKCIYIDPPYN----------------TGNDSFNYNDNFN 210

Query: 80  --AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN---DIVWRKS 134
             ++  F +  L   R  L  +G++++   Y+ +     ++  + F + N   +I+WR  
Sbjct: 211 HSSWLVFMKNRLEVAREFLSDDGSIYINLDYNEVHYCKVLMDEI-FGVENFQREIIWRIG 269

Query: 135 NPMPNFRG--RRFQNAHETLIWASPSPKA----KGYTFNYD------------------- 169
             +  ++     F   H+T+++ S +       K Y  N D                   
Sbjct: 270 -WLSGYKTSINNFIRNHDTILFYSKNADKLFFNKKYIENKDFKELIKIEKIQSNLDNLGI 328

Query: 170 -------ALKAANEDVQMRSDWLIPICSGSER-------LRNKDGEKLHPT--------Q 207
                   +K  N + + +   L  I +G+E        + +  GE +           Q
Sbjct: 329 DREKQKNIIKIINHETRPKRYPLEDIWNGNEYDDLNSIAIVSYSGETVSKMLGTEEIKGQ 388

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           K E L+ RIL +ST   D++LD F GSGT+ AVA K++R +IGIE + DYI+  TK 
Sbjct: 389 KSEKLIQRILEASTNENDLVLDFFAGSGTTCAVAHKMKRRYIGIE-QMDYIETITKE 444


>gi|154497807|ref|ZP_02036185.1| hypothetical protein BACCAP_01785 [Bacteroides capillosus ATCC
           29799]
 gi|150273305|gb|EDN00450.1| hypothetical protein BACCAP_01785 [Bacteroides capillosus ATCC
           29799]
          Length = 242

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 109/252 (43%), Gaps = 31/252 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY------NLQLNGQLYRPDHSLVDAVTDSWDKF 75
           +I+ G+++ +L +    + D +  DPPY        + N    +   S+ D     +D  
Sbjct: 8   EILCGDALKLLREFSPGTFDAVITDPPYASGGRTQAEKNKSTAKKYSSMGDHAPPPFDGD 67

Query: 76  SSFE-AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
           +  + ++  +   WL   R++ KP   + +   +  +      LQ   +      VW K 
Sbjct: 68  AKDQRSWTRWAAEWLSDARKLCKPGAPVCMFIDWRQLPAATDALQWAGWIWRGTAVWDKG 127

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N  P  +GR F+   E ++W S                  N D+ +     +P   G  +
Sbjct: 128 NSRPQ-KGR-FRQQAEYIVWGS------------------NGDMPISRP--VPCLPGVFK 165

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
             N    ++H T+KP  L+ R +V  T+PG  ILDPF GSGT+   A     S  GIE+ 
Sbjct: 166 YGNPQ-NRIHLTEKPLQLM-RDVVKITEPGGHILDPFAGSGTTVLAAVLEGYSATGIEVT 223

Query: 255 QDYIDIATKRIA 266
           ++Y  +A +RI+
Sbjct: 224 EEYAKLARERIS 235


>gi|307294546|ref|ZP_07574388.1| DNA methylase N-4/N-6 domain protein [Sphingobium chlorophenolicum
           L-1]
 gi|306879020|gb|EFN10238.1| DNA methylase N-4/N-6 domain protein [Sphingobium chlorophenolicum
           L-1]
          Length = 438

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 119/270 (44%), Gaps = 32/270 (11%)

Query: 31  VLEKLPA-KSVDLIFADPPYNLQLNGQ---LYRPDHS--LVDAVTDSWDKFSSFEAYDAF 84
           V EKL A +  +LI  DPPY   + G    L R  H   ++ A   S  +F++     AF
Sbjct: 180 VYEKLMAGERAELIMTDPPYGCAIAGNVSGLGRVKHENFVMGAGETSLPEFAATILRPAF 239

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP-MPNFRGR 143
               L+A  +  +     ++   +     +    Q +   + N IVW K+N  M  F   
Sbjct: 240 K---LMA--QHARSGAIAFICTDWRAAPHLLDAAQGVFHELKNLIVWAKTNAGMGTF--- 291

Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD-WLIPICSGSERLRNKDGEK 202
            +++AHE +     SP      F         E  + RS+ W     +G+   R      
Sbjct: 292 -YRSAHELIYAFKVSPGTHINNFGL------GEGGRHRSNVW---TYAGANVFRAGRLAD 341

Query: 203 L--HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           L  H T KP+ +++  L+  ++ G IILDPF GSGT+   A+   R   GIE+   Y D+
Sbjct: 342 LADHSTVKPKKMIADALLDCSRRGGIILDPFSGSGTTLVAAEMTGRRGFGIELDPKYADV 401

Query: 261 ATKRI---ASVQP-LGNIELTVLTGKRTEP 286
             +R+   A  +P LG + L+ +   R EP
Sbjct: 402 ILRRVAEEAGAEPTLGGVPLSEIAAMRAEP 431


>gi|239907576|ref|YP_002954317.1| hypothetical protein DMR_29400 [Desulfovibrio magneticus RS-1]
 gi|239797442|dbj|BAH76431.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 246

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 98/246 (39%), Gaps = 38/246 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYN---LQLNGQLYRPDHSLVDAVT-----DSWDK 74
           + +G+++S+L +LP   VDL+  DPPY+   L L+ +   P     +  T          
Sbjct: 11  LYQGDALSILRELPGDVVDLVLTDPPYSSGGLNLSARQVNPAAKYQNTGTRRVYPPMLGD 70

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
                ++  +   WL  C R+ +   +  V   +  +  +   +Q   +     IVW K 
Sbjct: 71  LKDQRSFVMWASLWLGECWRLARAGASCLVFSDWRQLPALTDAIQAAGWAWKGIIVWHKP 130

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA---LKAANEDVQMRSDWLIPICSG 191
           N  P+                         +F +DA   +    + +Q  S   +P   G
Sbjct: 131 NARPSLG-----------------------SFRHDAEFVIHGVKDRMQTHSHQCLP---G 164

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
                    +K+H T KP  L+  +L  S + G  +LDPF G GT+     +  R FIG+
Sbjct: 165 VFTYAMDPRQKVHLTAKPVRLVKDLLAVSPE-GATVLDPFLGGGTTAMACLETGRRFIGV 223

Query: 252 EMKQDY 257
           E+  +Y
Sbjct: 224 ELSTEY 229


>gi|315616913|gb|EFU97529.1| DNA methylase family protein [Escherichia coli 3431]
          Length = 215

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 97/244 (39%), Gaps = 53/244 (21%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           +   P  +VD I  DPPY   L G   R   ++    TD W + +  E Y          
Sbjct: 1   MATFPGNAVDFILTDPPY---LVGFRDRQGRTIAGDKTDEWLQPACNEMY---------- 47

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNFRGRRFQNAH- 149
             RVLK +  +     ++ + R     +N  F ++  +V+ K+      + G R + A+ 
Sbjct: 48  --RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYTSKAAYVGYRHECAYI 105

Query: 150 ----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
                  +   P P   G+ ++                                G + HP
Sbjct: 106 LAKGRPALPQKPLPDVLGWKYS--------------------------------GNRHHP 133

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ + Y     +R+
Sbjct: 134 TEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCIAALQSGRRYIGIELLEQYHRAGQQRL 193

Query: 266 ASVQ 269
            +VQ
Sbjct: 194 TAVQ 197


>gi|295091551|emb|CBK77658.1| DNA modification methylase [Clostridium cf. saccharolyticum K10]
          Length = 319

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/328 (23%), Positives = 123/328 (37%), Gaps = 101/328 (30%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD-AVTDSWDKFSSFE 79
           D II  +++  L +LP++SV      PPY            ++L D  +T    +  + E
Sbjct: 7   DTIINRDALYALRELPSESVHCAVTSPPY------------YALRDYGLTMQIGREDTPE 54

Query: 80  AYDAFTRAWLLACRRVLKPNGTLW--VIGSYHNIFRIGTM-------------------- 117
            Y           RRVL+P+GTLW  +  +Y      G+                     
Sbjct: 55  EYIRRLTVIFRELRRVLRPDGTLWLNIADTYCGTGSKGSSTDPKNPKGRNGQSVSIARKA 114

Query: 118 ------------------LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
                             L++  +++ +DI+W+K NPMP     R    +E +   +   
Sbjct: 115 AGIKQKDLIGIPWLLAFSLRSDGWYLRSDIIWQKENPMPESCKDRPTRCYEHIFLLT--- 171

Query: 160 KAKGYTFNYDAL---------------KAANEDVQMRSDWLIPICSGSERL-RNKDG--- 200
           K K Y ++  A+               ++AN          IP     + L R + G   
Sbjct: 172 KEKKYYYDAAAIAEPISPKTAARYRLGRSANSKYAAE----IPGQGKVQGLNRARSGGYY 227

Query: 201 -EKLHPTQK---------------------PEALLSRILVSSTKPGDIILDPFFGSGTSG 238
            + L PT +                     P  L    +++    G ++LDPFFGSGT+G
Sbjct: 228 DDALMPTTRNRRDVWTINTVPYKGGHFAAFPPKLAETCILAGCPKGGVVLDPFFGSGTTG 287

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIA 266
             AK L R ++GIE+  +Y  +A  RI 
Sbjct: 288 LAAKSLDRHYVGIEINAEYCALARARIG 315


>gi|256544782|ref|ZP_05472154.1| DNA methylase N-4/N-6 [Anaerococcus vaginalis ATCC 51170]
 gi|256399671|gb|EEU13276.1| DNA methylase N-4/N-6 [Anaerococcus vaginalis ATCC 51170]
          Length = 321

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 125/323 (38%), Gaps = 98/323 (30%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           II  ++IS L++ P K  D     PPY    + +  GQ+ R +               S 
Sbjct: 12  IINLDAISALKEFPDKIFDCCITSPPYYGLRDYKAEGQIGREE---------------SP 56

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVI--GSY------------HNI------------- 111
           E Y           +RVLK  GTLWV+   SY             NI             
Sbjct: 57  EEYLNKLIEVFREVKRVLKKEGTLWVVIGDSYAGTRSKKEYKDPKNIEGRSGQKEFITEK 116

Query: 112 -------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
                        +++   L+   +++ +DI+W K N MP     R   ++E +   S  
Sbjct: 117 LSGYKAKDLMGIPWQLALKLREDGWYLRSDIIWHKENAMPESCRDRPSRSYEHIFLLS-- 174

Query: 159 PKAKGYTFNYDALKAANEDVQ----MRS----DWLIPICSGSERLRNKDGEKL------- 203
            KA+ Y +N+DA+K   +++     MR+    +  +   +G++R    +  +        
Sbjct: 175 -KARKYFYNFDAMKEPIKEISKKRYMRARGKDNKYLQEGTGAKRQSINEAREYGEYIGDN 233

Query: 204 ---------------------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
                                H    P  L+   + +      +I+DPF GSGT G VA 
Sbjct: 234 VPKFRNNRDIWTINTSAFKGKHYAVFPPKLVELCIKAGCPKKGLIIDPFMGSGTVGMVAI 293

Query: 243 KLRRSFIGIEMKQDYIDIATKRI 265
           ++ R +IGI++ +DY  IA +RI
Sbjct: 294 RMDREYIGIDINKDYCQIAKERI 316


>gi|296394780|ref|YP_003659664.1| DNA methylase N-4/N-6 domain-containing protein [Segniliparus
           rotundus DSM 44985]
 gi|296181927|gb|ADG98833.1| DNA methylase N-4/N-6 domain protein [Segniliparus rotundus DSM
           44985]
          Length = 277

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 101/263 (38%), Gaps = 38/263 (14%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY----------NLQLNGQLYRPDHS-- 63
           + + +  +++G++I++L  LP  S D +  DPPY          N   N +  +  HS  
Sbjct: 24  LADHRAALVRGDAIALLRSLPDGSADAVVTDPPYSSGGGTQAERNKAPNQKYPQSGHSGQ 83

Query: 64  -LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
            L     D+ D++S       F   +L    R  +  G   V   +  I      LQ   
Sbjct: 84  ALPGFAGDNKDQYSHL----VFQHLFLAEALRATRAAGACVVFTDWRQIHTAVIALQTAG 139

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
           +     I W K N  P    R F++  E  +W +  P                 D     
Sbjct: 140 WVYRGVIPWAKKNARP-INARSFRHGCEYAVWGTNGP----------------HDQIGHC 182

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
             L      S    NK   ++H  QKP  ++  ++  + + G +++DPF GSG +G  A 
Sbjct: 183 TPLAGFVHASAPAPNK---RVHVNQKPPEVMEHLVQIAPENG-LVVDPFAGSGATGIAAL 238

Query: 243 KLRRSFIGIEMKQDYIDIATKRI 265
              R F+G E   D    A +R+
Sbjct: 239 AQGRRFLGCEHSPDIARTAAQRL 261


>gi|116622013|ref|YP_824169.1| DNA methylase N-4/N-6 domain-containing protein [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116225175|gb|ABJ83884.1| DNA methylase N-4/N-6 domain protein [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 296

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 48/84 (57%), Gaps = 4/84 (4%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           W IPI       R+    K HPTQKP  L+  +L   TK GD +LDPF G+GT+    K+
Sbjct: 115 WSIPILD----YRSLRDWKPHPTQKPVRLIRYLLEQYTKEGDTVLDPFVGTGTTAVACKQ 170

Query: 244 LRRSFIGIEMKQDYIDIATKRIAS 267
           +RR FI I+    YI +AT R+ +
Sbjct: 171 MRRHFIAIDNDPAYIKMATARLTT 194


>gi|317181087|dbj|BAJ58873.1| putative type III restriction enzyme M protein [Helicobacter pylori
           F32]
          Length = 601

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 77/168 (45%), Gaps = 37/168 (22%)

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN-FRGRRFQNAHETLIWAS 156
           P+GT W     ++I  +  M QN      N IV+   NPM   +     +    +  W  
Sbjct: 345 PSGTFW----RYSIGTLKDMEQN------NRIVFNGKNPMAKRYLSEVAEGRKSSTFWDG 394

Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
                 GY  N DA     E  Q+                  +G K+    KPEAL+SRI
Sbjct: 395 SEV---GYNLNGDA-----EIKQLF-----------------NGNKVFNNPKPEALISRI 429

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           L  ST   D++LD F GSGT+ AVA K++R +IGIE + DYI+  TK 
Sbjct: 430 LEVSTNENDLVLDFFAGSGTTCAVAHKMKRRYIGIE-QMDYIETITKE 476


>gi|282164886|ref|YP_003357271.1| putative DNA methylase [Methanocella paludicola SANAE]
 gi|282157200|dbj|BAI62288.1| putative DNA methylase [Methanocella paludicola SANAE]
          Length = 305

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 117/267 (43%), Gaps = 44/267 (16%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           +E+LP  SV L+   PPYN+   G+ Y  + SL              E  D     W   
Sbjct: 64  MEELPDNSVHLMVTSPPYNV---GKEYDENLSLK-------------EYLDFLANVWR-D 106

Query: 92  CRRVLKPNGTLWV----IGSYHNI----FRIGTMLQNLNFWILNDIVWRKSNPMPNFRG- 142
             RVL P G + +    +G    +    F I  ML ++ F +  +I+W K++        
Sbjct: 107 VYRVLVPGGRVCLNVANLGRKPYLPLHSFIIKDML-DIGFLMRGEIIWNKASSAGGSTAW 165

Query: 143 RRFQNA--------HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
             FQ+A        HE ++  S     + ++ N D  K ++   +   ++   I S    
Sbjct: 166 GSFQSASNPTLRDVHEYIMIFS----KQSFSRNNDCNKKSSITKEEFLEYTKSIWSFKSE 221

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
              K G   HP   P  L  R +   T   DIILDPF GSGT+   A ++ R F+G ++ 
Sbjct: 222 SATKIG---HPAPYPIELPLRCIKLYTFEDDIILDPFMGSGTTAIAALQVNRHFVGYDID 278

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTG 281
           +DYI +A KRI   +   +++ T+L G
Sbjct: 279 KDYIAVAEKRIKKYR--DSLKQTILKG 303


>gi|83716880|ref|YP_439226.1| gp56 [Burkholderia thailandensis E264]
 gi|257142349|ref|ZP_05590611.1| gp56 [Burkholderia thailandensis E264]
 gi|83650705|gb|ABC34769.1| gp56 [Burkholderia thailandensis E264]
          Length = 378

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 56/101 (55%), Gaps = 13/101 (12%)

Query: 169 DALKAANEDV----QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
           ++  AA  DV      RS W IP  S        DG   H    PEAL+   +++ ++PG
Sbjct: 277 ESFSAAVTDVVTSRNRRSVWTIPTQS-------FDGA--HFATFPEALVEPCVLAGSRPG 327

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           D++ DPFFGSGT+G VA++L R FIG E+  DY  +   R+
Sbjct: 328 DVVFDPFFGSGTTGQVAQRLGRRFIGCELNPDYEPLQRDRL 368



 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
           +R+   LQ+  +++  DI+W K NPMP     R   AHE L   S   K++ Y +++ A+
Sbjct: 137 WRLAFALQDAGWYLRQDIIWHKPNPMPESVRDRCTKAHEYLFLLS---KSERYYYDFHAM 193

Query: 172 K 172
           +
Sbjct: 194 Q 194


>gi|109946808|ref|YP_664036.1| modification methylase mjai [Helicobacter acinonychis str. Sheeba]
 gi|109714029|emb|CAJ99037.1| modification methylase mjai [Helicobacter acinonychis str. Sheeba]
          Length = 290

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 120/274 (43%), Gaps = 52/274 (18%)

Query: 39  SVDLIFADPPYNLQLNGQLYRPDHSL-VDAVTDSWDKFSSFEAYDAFTRAWLLA---CRR 94
           SVDLI   PPY    N + Y  + +  +   T   +   + E Y+ +    L     C R
Sbjct: 21  SVDLIITSPPY---FNIKDYTKNGTQDLQHSTQHVEDLGALEKYEDYLLGLLKVWHECYR 77

Query: 95  VLKPNGTLW-----------VIGSYHN--IFRI-----GTMLQNLN--------FWILND 128
           VLKPNG L            V+ +++N  IF +      ++L++LN         ++L+ 
Sbjct: 78  VLKPNGKLCINVPLIPMLKKVLNTHYNRHIFDLHADIQHSILRDLNNMLENKPKIFLLDV 137

Query: 129 IVWRKSNP--------MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ- 179
            +W+++NP         P  R    QN  E +       K K  T      K  ++  Q 
Sbjct: 138 YIWKRTNPTKKLMFGSYPYPRNFYAQNTIEFIGVFVKDGKPKQPTKEQREQKEQSQLTQE 197

Query: 180 -----MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
                 +  W IPI + ++    K     H    P  L  R++   +  GD++LDPF GS
Sbjct: 198 EWVEFTKQIWEIPIPNKNDIAFGK-----HAALMPAELARRLIRLYSCVGDVVLDPFSGS 252

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           GT+   AK L+R+FIG E+ ++Y  +  +++ ++
Sbjct: 253 GTTLREAKLLKRNFIGYELYENYKPLIEQKLGNL 286


>gi|237508020|ref|ZP_04520735.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei
           MSHR346]
 gi|235000225|gb|EEP49649.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei
           MSHR346]
          Length = 378

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 56/101 (55%), Gaps = 13/101 (12%)

Query: 169 DALKAANEDV----QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
           ++  AA  DV      RS W IP  S        DG   H    PEAL+   +++ ++PG
Sbjct: 277 ESFSAAVTDVVTSRNRRSVWTIPTQS-------FDG--AHFATFPEALVEPCVLAGSRPG 327

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           D++ DPFFGSGT+G VA++L R FIG E+  DY  +   R+
Sbjct: 328 DVVFDPFFGSGTTGQVAQRLGRRFIGCELNPDYEPLQRDRL 368



 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
           +R+   LQ+  +++  DI+W K NPMP     R   AHE L   S   K++ Y +++ A+
Sbjct: 137 WRLAFALQDAGWYLRQDIIWHKPNPMPESVRDRCTKAHEYLFLLS---KSERYYYDFHAM 193

Query: 172 K 172
           +
Sbjct: 194 Q 194


>gi|154500275|ref|ZP_02038313.1| hypothetical protein BACCAP_03941 [Bacteroides capillosus ATCC
           29799]
 gi|150271007|gb|EDM98281.1| hypothetical protein BACCAP_03941 [Bacteroides capillosus ATCC
           29799]
          Length = 244

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 107/251 (42%), Gaps = 31/251 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY------NLQLNGQLYRPDHSLVDAVTDSWDKF 75
           +II G+++ VL +    + D +  DPPY        + N    +   S+ ++    +D  
Sbjct: 13  EIIHGDALKVLREFAPNTFDAVITDPPYASGGRTQAEKNKSTDKKYSSMGESAPPPFDGD 72

Query: 76  SSFE-AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
           S  + ++  +   WL   R+V KP   + +   +  +      LQ   +      VW K 
Sbjct: 73  SKDQRSWTRWAAEWLYDARKVCKPGAPVCMFIDWRQLPAATDALQWAGWIWRGTAVWDKG 132

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N  P  +GR F+   E ++W S                  N D+ +     +P   G  +
Sbjct: 133 NSRPQ-KGR-FRQQAEYIVWGS------------------NGDMPISRP--VPCLPGVFK 170

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
             N    ++H T+KP  L+ R +V  T+PG  ILDPF GSG++   A     S  GIE+ 
Sbjct: 171 YGNPQ-NRIHLTEKPLQLM-RDVVKITEPGGRILDPFAGSGSTVLAAVLEGYSATGIEVT 228

Query: 255 QDYIDIATKRI 265
             Y  ++ +RI
Sbjct: 229 DAYAALSKERI 239


>gi|169830888|ref|YP_001716870.1| DNA methylase N-4/N-6 domain-containing protein [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169637732|gb|ACA59238.1| DNA methylase N-4/N-6 domain protein [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 545

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 141/364 (38%), Gaps = 116/364 (31%)

Query: 19  WKDKIIKGNSISVL-EKLPAKSVDLIFADPP------YNLQLNGQLYRPDHSLVDAVTDS 71
           WK+K   G+++ ++ + +P  SVDLI+ DPP      YN+    +      + + A  D+
Sbjct: 5   WKNKFYFGDNLGIMRDYIPDGSVDLIYLDPPFNSNATYNVLFQEKNGTQSAAQITAFEDT 64

Query: 72  WD-KFSSFEAY-------------------------DAFTRAWLLACR-----RVLKPNG 100
           W     S EAY                         D      +LA R     RVLK  G
Sbjct: 65  WHWGLESEEAYREVVTGGPKRLADLIQALRSFLGQNDMMAYVVMLAIRLLDMHRVLKSTG 124

Query: 101 TLWV----IGSYHNIFRIGTMLQNLNFWILNDIVWR-------KSNPMPNFR-------- 141
           ++++      S++    + ++    +F   N+I+WR       KS   P           
Sbjct: 125 SIYLHCDPTASHYLKLIMDSIFGARHF--RNEIIWRRTNAHNMKSRQFPRIHDVLLFYSK 182

Query: 142 --------------------------GRRFQNAHETLIWASPS----------PKAKGYT 165
                                     GR F     T++  S S          P  +G+ 
Sbjct: 183 TDQFLFKPEFTAYSEEQLRRYKKDASGRLFTGQDLTIVSTSASRKFEWRGTKPPPHRGWG 242

Query: 166 FNYDALKA--------ANEDVQMRSDWL------IP------ICSGSERLRNKDGEKL-H 204
              + L+         A +D   R D L      +P      I +   R+ N   E+L +
Sbjct: 243 LPIEQLEELWRDGRILAKKDGSPRLDGLKVYLDEMPGKIADSIWADIPRVGNTSKERLGY 302

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PTQKPEALL RI+ +S+  GD++LDPF G GT+  VA+ L R +IGI++    I     R
Sbjct: 303 PTQKPEALLKRIINASSNEGDLVLDPFCGCGTTVTVAELLNRRWIGIDITHLAIAHMKHR 362

Query: 265 IASV 268
           + S 
Sbjct: 363 LESA 366


>gi|17975218|ref|NP_536413.1| putative DNA cytosine methylase [Burkholderia phage phiE125]
 gi|17484079|gb|AAL40330.1|AF447491_58 gp56 [Burkholderia phage phiE125]
          Length = 378

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 56/101 (55%), Gaps = 13/101 (12%)

Query: 169 DALKAANEDV----QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
           ++  AA  DV      RS W IP  S        DG   H    PEAL+   +++ ++PG
Sbjct: 277 ESFSAAVTDVVTSRNRRSVWTIPTQS-------FDG--AHFATFPEALVEPCVLAGSRPG 327

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           D++ DPFFGSGT+G VA++L R FIG E+  DY  +   R+
Sbjct: 328 DVVFDPFFGSGTTGQVAQRLGRRFIGCELNPDYEPLQRDRL 368



 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
           +R+   LQ+  +++  DI+W K NPMP     R   AHE L   S   K++ Y +++ A+
Sbjct: 137 WRLAFALQDAGWYLRQDIIWHKPNPMPESVRDRCTKAHEYLFLLS---KSERYYYDFHAM 193

Query: 172 K 172
           +
Sbjct: 194 Q 194


>gi|162148641|ref|YP_001603102.1| DNA methylase N-4/N-6 domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787218|emb|CAP56811.1| putative DNA methylase N-4/N-6 domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 247

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 91/241 (37%), Gaps = 45/241 (18%)

Query: 35  LPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
           +PA+   DLI ADPPY           + SL      SWD+             WL    
Sbjct: 12  MPAQGPYDLILADPPYG----------ETSL------SWDRR---------VEGWLPLAA 46

Query: 94  RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           + L P+G+L V GS  +        +        +IVW K N    F   RF+  HE ++
Sbjct: 47  QALTPSGSLSVFGSLRSFMATEVDFRAARLRHAQEIVWEKQN-GSVFHADRFRRVHELIV 105

Query: 154 WASPSPKAKGYTFNYDALK------------------AANEDVQMRSDWLIPICSGSERL 195
              P+       +N  A                    A    +    D    +    +R 
Sbjct: 106 QFYPATARWQDIYNVVATTDDARARTVRRKRRPPHTGAIAAGIYRSLDGGPRLARSVQRF 165

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           RN  G  +HPT+KP  LL  ++  S  P  ++ D F GSG +G   +   R ++G E+  
Sbjct: 166 RNVHGRAIHPTEKPVPLLDLLVRVSCPPDGLVGDWFAGSGAAGVACRLAGRRYVGCEIDP 225

Query: 256 D 256
           D
Sbjct: 226 D 226


>gi|298294253|ref|YP_003696192.1| DNA methylase N-4/N-6 domain protein [Starkeya novella DSM 506]
 gi|296930764|gb|ADH91573.1| DNA methylase N-4/N-6 domain protein [Starkeya novella DSM 506]
          Length = 480

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 104/225 (46%), Gaps = 20/225 (8%)

Query: 42  LIFADPPYNLQLNGQLYRPD-HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG 100
           ++ +D PYN+ +NG +     H    A     D     +A+ AF  ++L  C     P  
Sbjct: 223 VVSSDGPYNVAINGHVSSTGRHREFVAGVGEMDA----DAFTAFNASYLNNCLAYSVPGV 278

Query: 101 TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK-SNPMPNFRGRRFQNAHETLIWASPSP 159
            ++    + ++  + +  +     + N  VW K S  M +F    +++ HE L++    P
Sbjct: 279 LIYAFMDWRHMEEVLSAGRLAKLDLQNLCVWNKGSGGMGSF----YRSQHE-LVFVFKEP 333

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVS 219
            A     + + +K         + W  P   G+  LR +   +LHPT KP AL++ I+  
Sbjct: 334 SAS----HVNNVKLGKFGRNRTNVWNYP---GASSLRKE--LELHPTPKPVALVADIIRD 384

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           ++  GD++LDPF GSGT+   A    R    IE+   Y+D+A +R
Sbjct: 385 ASNRGDVVLDPFSGSGTTIIAAASTGRRARVIELDPHYVDVAVRR 429


>gi|325297643|ref|YP_004257560.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides
           salanitronis DSM 18170]
 gi|324317196|gb|ADY35087.1| DNA methylase N-4/N-6 domain protein [Bacteroides salanitronis DSM
           18170]
          Length = 262

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 115/270 (42%), Gaps = 50/270 (18%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ--LYRPDHSLVDAVTDSWDKFSS 77
           +DKI   + +  ++++  +SVD + AD PY + LN Q    R D  +   +   W+++  
Sbjct: 3   QDKIYHMDCLEGMKQIADRSVDAVIADLPYGV-LNRQNGAARWDQKI--PLAPLWEQYL- 58

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK---- 133
                           R+ KP+  + +      +F    +L     W  N +VW K    
Sbjct: 59  ----------------RITKPDSPIILFAQ--GMFTAELVLSQPKLWRYN-LVWHKDRVS 99

Query: 134 ----SNPMPNFRG-------RRFQNAHETLIWASPSP------KAKGYTFN-YDALKAAN 175
               +N MP  +        R+    H  +I   P        K +G+T   Y  +K A 
Sbjct: 100 GHLNANRMPMRQHEDIVVFYRKLPVYHPQMIPCPPEKRNHDRRKTEGFTNRCYGDMKLAP 159

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
             +   +D   P    S    +  G   HPTQKP AL+  ++ + T  GD++LD   GSG
Sbjct: 160 VRI---ADDKYPTSVVSVPKEHCTGAFYHPTQKPVALIEYLIRTYTDEGDLVLDNCIGSG 216

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T+   A +  R +IG E+ + Y +IA +RI
Sbjct: 217 TTAIAALRTGRHYIGFEIDKSYCEIAEQRI 246


>gi|91204182|emb|CAJ71835.1| site-specific DNA-methyltransferase (cytosine-N4-specific)
           [Candidatus Kuenenia stuttgartiensis]
          Length = 412

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 112/276 (40%), Gaps = 59/276 (21%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G+S  +L+++P +SVDLIF  PPY    N    RP++S  +   +   K           
Sbjct: 131 GDSAQLLDEMPIESVDLIFTSPPY---FNA---RPEYSEYEEYEEYLFKM---------- 174

Query: 86  RAWLLACRRVLKPNGTLWVIG-------------SYHNI---FRIGTMLQNLNFWILNDI 129
           R  +  C RVL   G  +V+              S   I   F +  +     +  ++DI
Sbjct: 175 RQIIRRCHRVLT-EGRFFVMNISPVLLRRASRNESSRRIAVPFDMHRIFIEEGYDFIDDI 233

Query: 130 VWRKSNPM--PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI- 186
           +W K         RGRRF      L +     KA   T  Y  +   + D+ +  DW I 
Sbjct: 234 IWLKPEGAGWATGRGRRFAADRNPLQY-----KAVPVT-EYVLVYRKHSDLLI--DWFIR 285

Query: 187 -----------PICSGSERLR----NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
                       I  G E+      N      HP   P AL  ++L   +  GD++LDPF
Sbjct: 286 NHPDRNTVEASKISDGYEKTNIWKINPSTSSKHPAAFPIALAEKVLRYYSFKGDVVLDPF 345

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            GSGT G  A +L R F+  +   +YIDI  K I S
Sbjct: 346 AGSGTVGVAASELERRFVLFDNNPEYIDIIRKEIIS 381


>gi|34495460|ref|NP_899675.1| DNA methyltransferase [Chromobacterium violaceum ATCC 12472]
 gi|34101316|gb|AAQ57685.1| probable DNA methyltransferase [Chromobacterium violaceum ATCC
           12472]
          Length = 298

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 83/160 (51%), Gaps = 15/160 (9%)

Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL- 171
           R    +Q+ ++ + ND VW K NP+P+    R   +HE +       K++ Y FN DA+ 
Sbjct: 151 RFAIAMQDHDWLVRNDNVWVKPNPIPDQVRDRCSMSHEYVFHLV---KSRWYYFNKDAVG 207

Query: 172 -KAANEDVQMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
            K+A+  V    D W +     S +         H  +  E L+   ++++T PG ++LD
Sbjct: 208 RKSASGSVLPPPDTWEVAPARSSHQ---------HKARFSEELVRIPILATTPPGGVVLD 258

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           PF GSGTS   A+K     IGI++K ++ ++  +++ S++
Sbjct: 259 PFGGSGTSLVFARKHGFRAIGIDLKAEFCELMVEQLRSLE 298


>gi|317484071|ref|ZP_07943003.1| DNA methylase [Bilophila wadsworthia 3_1_6]
 gi|316924677|gb|EFV45831.1| DNA methylase [Bilophila wadsworthia 3_1_6]
          Length = 248

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 110/258 (42%), Gaps = 40/258 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYN---LQLNGQLYRPDHSLVDAVT---------D 70
           + +G+++ +L  LP   +D +  DPPY+   + +  +   P      + T         D
Sbjct: 12  LYQGDALGILATLPDAVMDAVLTDPPYSSGGVTMGARQADPAQKYQQSGTKRQYPPMLGD 71

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
           + D+ S    +  +   WL  C R+ +    L V   +  +  +   +Q   +     I 
Sbjct: 72  AKDQRS----WTMWCTLWLGECWRIAREGAPLMVFTDWRQLPALSDAVQAAGWAWRGVIA 127

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W K +  P     +F+   E +++A+   K +        L        + S  +IP+  
Sbjct: 128 WDKRSARPQIG--KFRQQCEYVLFAT---KGRFIAHTRACLPG------VYSYPVIPV-- 174

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
                     +K+H T KP AL+  +L + T P   +LDPF G G+ G    +  R ++G
Sbjct: 175 ----------QKVHLTSKPVALIEDLL-AVTAPHASVLDPFMGGGSVGEACIRTGRGYVG 223

Query: 251 IEMKQDYIDIATKRIASV 268
           +E+ ++Y DI+  R+ +V
Sbjct: 224 MELSREYYDISRTRLTAV 241


>gi|308185150|ref|YP_003929283.1| type IIS restriction enzyme M2 protein (mod) [Helicobacter pylori
           SJM180]
 gi|308061070|gb|ADO02966.1| type IIS restriction enzyme M2 protein (mod) [Helicobacter pylori
           SJM180]
          Length = 287

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 126/289 (43%), Gaps = 50/289 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL-VDAVTDSWDKFSSFE 79
           +K+   NS ++ E +P  SVD I   PPY    N + Y  + +  +       +   + E
Sbjct: 4   NKVFYHNSTNMHE-VPDNSVDSIITSPPY---FNIKDYTKNGTQDLQHSAQHVEDLGALE 59

Query: 80  AYDAFTRAWL---LACRRVLKPNGTLW-----------VIGSYHN--IFRIG-----TML 118
            Y+ +    L   L C R LKPNG L            V+ +++N  IF +      ++L
Sbjct: 60  KYEDYLLGLLKVWLECYRALKPNGKLCINVPLMPMLKKVLNTHYNRHIFDLHADIQRSIL 119

Query: 119 QNLN--------FWILNDIVWRKSNP--------MPNFRGRRFQNAHETL--IWASPSPK 160
            +LN         ++L+  +W+++NP         P  R    QN  E +        PK
Sbjct: 120 HDLNNTLENKPKMFLLDVYIWKRTNPTKRLMFGSYPYPRNFYAQNTIEFIGVFVKDGKPK 179

Query: 161 AKGYTFNYDALKAANEDVQM-RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVS 219
                    +     E V+  +  W IPI + ++    K     H    P  L  R++  
Sbjct: 180 QPTEEQKEQSQLTQEEWVEFTKQIWEIPIPNKNDIAFGK-----HAALMPAELARRLIRL 234

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            +  GD++LDPF GSGT+   AK L+R+FIG E+ ++Y  +  +++ ++
Sbjct: 235 YSCVGDVVLDPFSGSGTTLREAKLLKRNFIGYELYENYKPLIEQKLGNL 283


>gi|320640054|gb|EFX09635.1| putative methyltransferase [Escherichia coli O157:H7 str. G5101]
          Length = 147

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 78/152 (51%), Gaps = 26/152 (17%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLL----ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WLL     C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFID-WLLEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
             + + + + +E ++       AK YTFN DA
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDA 146


>gi|166363574|ref|YP_001655847.1| DNA methyltransferase [Microcystis aeruginosa NIES-843]
 gi|166085947|dbj|BAG00655.1| DNA methyltransferase [Microcystis aeruginosa NIES-843]
          Length = 565

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 60/91 (65%), Gaps = 10/91 (10%)

Query: 178 VQMRSDW--LIPICSGS-ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
           V ++++W  + P+ S + ERL        +PTQKPEALL RI+ +S+  GD+ILD + G 
Sbjct: 293 VTLQNNWDDIFPLTSSAKERLG-------YPTQKPEALLERIIKASSNKGDVILDAYCGC 345

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           GT+ AVA++L R++IGI++    I +  KR+
Sbjct: 346 GTTIAVAERLERNWIGIDITYQSISLMLKRL 376


>gi|2314540|gb|AAD08413.1| type III restriction enzyme M protein (mod) [Helicobacter pylori
           26695]
          Length = 288

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 77/172 (44%), Gaps = 36/172 (20%)

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN-FRGRRFQNAHETLIWAS 156
           P+GT W     ++I  +  M QN      N IV+   NPM   +     +    +  W  
Sbjct: 38  PSGTFW----RYSIGTLKDMEQN------NRIVFNGKNPMAKRYLSEVAEGRKSSTFWDG 87

Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
                 GY  N DA     E  Q+                  +G K+    KPEALL RI
Sbjct: 88  SEV---GYNLNGDA-----EIKQLF-----------------NGNKVFNNPKPEALLQRI 122

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           L  STK  D++LD F GSGT+ AVA K++R +IGIEM + +  +   R+  V
Sbjct: 123 LEISTKENDLVLDFFAGSGTTCAVAHKMKRKYIGIEMGEHFESVILPRLKKV 174


>gi|283955714|ref|ZP_06373205.1| hypothetical protein C1336_000060025 [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283792669|gb|EFC31447.1| hypothetical protein C1336_000060025 [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 771

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 119/297 (40%), Gaps = 82/297 (27%)

Query: 22  KIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +++K ++   L  L  K    +DLI+ DPP+N          D    D   DS       
Sbjct: 377 ELVKADNFQALNSLMPKYQGKIDLIYIDPPFNTG-------SDFDYKDKFQDS------- 422

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL----NFWILNDIVWRKS 134
             + +     L   +  L   G+ ++   Y+  +R   +L ++    NF  +N+IVW   
Sbjct: 423 -TWLSLMHNRLELAKEFLSDKGSFYLHLDYNANYRGRELLNDIFGEENF--VNEIVW--- 476

Query: 135 NPMPNFRGR-----RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
               N++G      +F   H+T+++     K K + FN+D ++   ED     D      
Sbjct: 477 ----NYKGTTNTNVKFAPKHDTILYY----KTKSHIFNFDDVRIPYED----DDKFSIDE 524

Query: 190 SGSERLRNKDGEKLHP--------------------------------------TQKPEA 211
           +G   +  K  ++ +P                                      TQK E 
Sbjct: 525 NGKYYMMWKKDQRYYPPQKFVNNTWILLGKSQYDVWNDIPSMATAHGKEFLNFQTQKQEK 584

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           LL RI+ +S+    I+LD F GSGT+ A A KL R ++G+EM + +  +   R+  V
Sbjct: 585 LLQRIIKASSNENSIVLDFFTGSGTTIATAHKLERKWLGVEMGEHFYKVIIPRMKKV 641


>gi|85714766|ref|ZP_01045753.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
           Nb-311A]
 gi|85698651|gb|EAQ36521.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
           Nb-311A]
          Length = 451

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 98/227 (43%), Gaps = 12/227 (5%)

Query: 38  KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK 97
           K VD  F DPPYN+++ G           A+       + F ++ A T   L A   V +
Sbjct: 221 KRVDAAFLDPPYNVRIGGHAVSAGSHREFAMASGEMNEAEFRSFLADT---LGAAASVSR 277

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
                +V   + ++  +  +   +    LN  VW KSN      G  +++ HE +     
Sbjct: 278 DGAVHFVCMDWRHMDSVSAVGATVYGACLNLCVWNKSN---AGMGSLYRSKHELVFVYR- 333

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
                G   + + ++         + W     +     R +D   LHPT KP  L++  L
Sbjct: 334 ----VGMAPHLNMVELGKYGRNRTNVWDYASVNSMRGSRRED-LTLHPTVKPTGLVADAL 388

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
              T+ GD++LD F GSGT+   A++  R F G+++   Y+D+A +R
Sbjct: 389 KDVTRHGDLVLDLFLGSGTTLIAAERTGRCFRGLDIDPAYVDVAIER 435


>gi|306825918|ref|ZP_07459256.1| type III restriction-modification system methylation subunit
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304431850|gb|EFM34828.1| type III restriction-modification system methylation subunit
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 641

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 66/126 (52%), Gaps = 16/126 (12%)

Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD-----------GEKL 203
            +  P+ K Y   Y  +K A +     S W I   S + R  N +           GE++
Sbjct: 397 GTSKPQLKAY---YSEVKMAGKGKASSSIWTIQPNSITWRETNTNTSATKHQQELFGEEV 453

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IAT 262
               KPE L+ R+L  ST  GD++LD F GSGT+ AVA K+ R +IGIE + DYI+ +A 
Sbjct: 454 FTNPKPEELIKRVLELSTNEGDLVLDFFMGSGTTAAVAHKMNRQYIGIE-QMDYIETVAV 512

Query: 263 KRIASV 268
           +R+  V
Sbjct: 513 ERLKKV 518


>gi|325996644|gb|ADZ52049.1| type IIS restriction enzyme M2 protein [Helicobacter pylori 2018]
 gi|325998233|gb|ADZ50441.1| type IIS restriction enzyme M2 protein [Helicobacter pylori 2017]
          Length = 287

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 123/283 (43%), Gaps = 49/283 (17%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL-VDAVTDSWDKFSSFEAYDAFT 85
           +S + + ++P  SVDLI   PPY    N + Y  + +  +       +   + E Y+ + 
Sbjct: 9   HSSTNMNEVPDNSVDLIITSPPY---FNIKDYAKNGTQDLQHSAQHVEDLGALEKYEDYL 65

Query: 86  RAWL---LACRRVLKPNGTLW-----------VIGSYHN--IFRIG-----TMLQNLN-- 122
              L   L C R LKPNG L            V+ +++N  IF +      ++L +LN  
Sbjct: 66  LGLLKVWLECYRALKPNGKLCINAPLMPMLKKVLNTHYNRHIFDLHADIQHSILHDLNNI 125

Query: 123 ------FWILNDIVWRKSNP--------MPNFRGRRFQNAHETL--IWASPSPKAKGYTF 166
                  ++L+  +W++ NP         P  R    QN  E +        PK      
Sbjct: 126 LENKPKMFLLDVYIWKRVNPTKRLMFGSYPYPRNFYAQNTIEFIGVFVKDGKPKQPTEEQ 185

Query: 167 NYDALKAANEDVQM-RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
              +     E V+  +  W IPI + ++    K     H    P  L  R++   +  GD
Sbjct: 186 KEQSQLTQEEWVEFTKQIWEIPIPNKNDIAFGK-----HAALMPAELARRLIRLYSCVGD 240

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           ++LDPF GSGT+   AK L+R+FIG E+ ++Y  +  +++ ++
Sbjct: 241 VVLDPFSGSGTTLREAKLLKRNFIGYELYENYKPLIEQKLGNL 283


>gi|317014761|gb|ADU82197.1| type IIS restriction enzyme M2 protein (mod) [Helicobacter pylori
           Gambia94/24]
          Length = 287

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 123/283 (43%), Gaps = 49/283 (17%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL-VDAVTDSWDKFSSFEAYDAFT 85
           +S + + ++P  SVDLI   PPY    N + Y  + +  +       +   + E Y+ + 
Sbjct: 9   HSSANMNEVPDNSVDLIITSPPY---FNIKDYAKNGTQDLQHSAQHVEDLGALEKYEDYL 65

Query: 86  RAWL---LACRRVLKPNGTLW-----------VIGSYHN--IFRIG-----TMLQNLN-- 122
              L   L C R LKPNG L            V+ +++N  IF +      ++L +LN  
Sbjct: 66  LGLLKVWLECYRALKPNGKLCINVPLMPMLKKVLNTHYNRHIFDLHADIQHSILHDLNNT 125

Query: 123 ------FWILNDIVWRKSNP--------MPNFRGRRFQNAHETL--IWASPSPKAKGYTF 166
                  ++L+  +W++ NP         P  R    QN  E +        PK      
Sbjct: 126 LENKPKMFLLDVYIWKRVNPTKRLMFGSYPYPRNFYAQNTIEFIGVFVKDGKPKQPTEEQ 185

Query: 167 NYDALKAANEDVQM-RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
              +     E V+  +  W IPI + ++    K     H    P  L  R++   +  GD
Sbjct: 186 KEQSQLTQEEWVEFTKQIWEIPIPNKNDIAFGK-----HAALMPAELARRLIRLYSCVGD 240

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           ++LDPF GSGT+   AK L+R+FIG E+ ++Y  +  +++ ++
Sbjct: 241 VVLDPFSGSGTTLREAKLLKRNFIGYELYENYKPLIEQKLGNL 283


>gi|156740880|ref|YP_001431009.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156232208|gb|ABU56991.1| DNA methylase N-4/N-6 domain protein [Roseiflexus castenholzii DSM
           13941]
          Length = 281

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 43/63 (68%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           LHP   P+ L   +++  ++PGDI+LDP  GSGT+  VA+   R +IGIE+ Q+Y +IA 
Sbjct: 201 LHPATFPDKLAEDLILCFSQPGDIVLDPMCGSGTTCVVARNNNRKYIGIEISQEYCEIAR 260

Query: 263 KRI 265
           KRI
Sbjct: 261 KRI 263


>gi|145632421|ref|ZP_01788156.1| twin-argninine leader-binding protein DmsD [Haemophilus influenzae
           3655]
 gi|115289034|gb|ABI85525.1| M.Hin1056ModP-7B [Haemophilus influenzae]
 gi|144987328|gb|EDJ93858.1| twin-argninine leader-binding protein DmsD [Haemophilus influenzae
           3655]
          Length = 687

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/74 (50%), Positives = 50/74 (67%), Gaps = 2/74 (2%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +N+ G      +KPEALL RI+  +TK GDIILD   GSGT+ AVA K+ R +IGIE + 
Sbjct: 477 QNEGGVSFPTGKKPEALLRRIIDMTTKEGDIILDYHLGSGTTAAVAHKMNRQYIGIE-QM 535

Query: 256 DYID-IATKRIASV 268
           DYI+ +A +R+  V
Sbjct: 536 DYIETLAVERLKKV 549


>gi|297374639|emb|CBL42926.1| DNA methylase N-4/N-6 domain protein [Candidatus Magnetobacterium
           bavaricum]
          Length = 382

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 108/230 (46%), Gaps = 42/230 (18%)

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWV----IGSYHNIFRIGTMLQNLNFWILNDIVW---R 132
           AY       L+  RRVLK  G++++      S++    +  +    NF   N+IVW    
Sbjct: 3   AYLVMMCVRLIELRRVLKDTGSIYLHCDPTASHYLKIVMDAIFGVKNF--RNEIVWCYRG 60

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA--ANEDVQMRSDWLIPICS 190
              P  +F GRR    H+ ++  S   K   Y F  D ++     E ++   D +     
Sbjct: 61  GGTPRKDF-GRR----HDVILRYS---KTNDYLFYSDPVRVPYQAEGIERTDDAMWGKHK 112

Query: 191 GSER-------------------LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDP 230
           G+++                   L   D E+L + TQKP  LL RI+ +S+K GD++LDP
Sbjct: 113 GTDKVYKPHPLGKVPEDWWSMNILNANDPERLGYQTQKPGTLLERIVNASSKEGDLVLDP 172

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQ---DYIDIATKRIASVQPLGNIELT 277
           F G GT+ AVA+KL R +IGI++     + I +  K +  ++P  + ++T
Sbjct: 173 FCGCGTTVAVAQKLNRQWIGIDITHLATNLIKLRLKCLFDLEPKRDYDVT 222


>gi|291546437|emb|CBL19545.1| DNA modification methylase [Ruminococcus sp. SR1/5]
          Length = 248

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 108/263 (41%), Gaps = 48/263 (18%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +++G+ + ++ ++P  S+D++ +D PY         R        + + W+++       
Sbjct: 6   LLQGDCLELMNRIPDSSIDMVLSDLPYGTT------RCRWDAPINLQELWEQY------- 52

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
                     RRV+K NG + +  +    F    +  N   +   + +WRK+ P      
Sbjct: 53  ----------RRVVKENGAIALFSA--QPFTTELISSNKAMYRY-EWIWRKTQPSGFMNA 99

Query: 143 RRFQ-NAHETL-IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER------ 194
           ++     HE + I+    P       +    K A       SD     C G E       
Sbjct: 100 KKMPLRTHENIEIFYRKPPTYNPQMTHGHQRKTATAYGTRESDG--SSCYGREERNYTYD 157

Query: 195 ---------LRNKDGEK---LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
                    L+   G+K   LHPTQKP  LL  ++ + T PG+ +LD   G+G++G    
Sbjct: 158 STDRYPVDVLQYSTGDKSKRLHPTQKPVDLLEYLVKTYTNPGETVLDNCMGAGSTGVACL 217

Query: 243 KLRRSFIGIEMKQDYIDIATKRI 265
              R F+GIE+  +Y  IA +RI
Sbjct: 218 NTGREFVGIELDPEYYQIAKERI 240


>gi|224438686|ref|ZP_03659576.1| putative methyltransferase [Helicobacter cinaedi CCUG 18818]
 gi|313145068|ref|ZP_07807261.1| modification methylase HpaI [Helicobacter cinaedi CCUG 18818]
 gi|313130099|gb|EFR47716.1| modification methylase HpaI [Helicobacter cinaedi CCUG 18818]
          Length = 276

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 117/267 (43%), Gaps = 42/267 (15%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN--LQLNGQLYRPDHSLVDAVTDSWDKF 75
           EW +KI   +++ +L+ LP + +D+I++DP YN  +  NG  Y          T  W+ +
Sbjct: 2   EW-NKIYNDDTLKILKSLPNECLDMIWSDPDYNVGINYNGSKY----------TQKWEDY 50

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIG-SYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            S+    A        C RVLKP+G L+++     N +     L +L +  +++ VW  +
Sbjct: 51  ISWYCELA------TQCLRVLKPSGNLFLMNYPKQNAYLRVKCLDSLAY-DVSEYVWVYN 103

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN-------------EDVQMR 181
             + + + RR   AH ++I A+ S     Y  N  AL   N                +M 
Sbjct: 104 TNVGHSK-RRLTTAHRSIIHATKSKNNHFYKDNI-ALPYQNPTDKRILQRLADGHKGRMP 161

Query: 182 SDWLIPICSGSERLRNKDGEK-LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
             W        + ++N   +K  H  Q P  L+   + S T  GD +   F GSG    +
Sbjct: 162 YSWFY-----FDLVKNVSKDKTFHSCQIPAPLVEMFIKSCTNEGDSVFVLFGGSGGEILL 216

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIAS 267
            + L+R +I  E+ + Y ++   R+ S
Sbjct: 217 CENLKRKWISCELHKPYFEMINDRLQS 243


>gi|145636496|ref|ZP_01792164.1| type III restriction-modification system methyltransferase-like
           protein [Haemophilus influenzae PittHH]
 gi|145270321|gb|EDK10256.1| type III restriction-modification system methyltransferase-like
           protein [Haemophilus influenzae PittHH]
          Length = 231

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 56/91 (61%), Gaps = 7/91 (7%)

Query: 184 WLIPICSGSERL-----RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
           W I +C   E +     +N+ G      +KPEALL RI+  +T+ GDI+LD   GSGT+ 
Sbjct: 9   WSILVCDFWEDIDFQNTQNEGGISFPTGKKPEALLHRIIDMTTQKGDIVLDYHLGSGTTA 68

Query: 239 AVAKKLRRSFIGIEMKQDYID-IATKRIASV 268
           AVA K+ R +IGIE + DYI+ +A +R+  V
Sbjct: 69  AVAHKMNRQYIGIE-QMDYIETLAVERLKKV 98


>gi|332296748|ref|YP_004438670.1| DNA methylase N-4/N-6 domain protein [Treponema brennaborense DSM
           12168]
 gi|332179851|gb|AEE15539.1| DNA methylase N-4/N-6 domain protein [Treponema brennaborense DSM
           12168]
          Length = 399

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 107/267 (40%), Gaps = 59/267 (22%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G+S  +L + PA+S+DL+F  PPY    N    RP+++           + ++E Y    
Sbjct: 117 GDSEELLNETPAESIDLVFTSPPY---YNA---RPEYA----------DYETYEDYLNKM 160

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNI----------------FRIGTMLQNLNFWILNDI 129
           R  + AC RVL   G  +VI     +                F    +     F  ++DI
Sbjct: 161 RKIIRACHRVLN-EGRFFVINISPILIRRSSRSESSKRIAVPFDFHRLFIEEGFEFIDDI 219

Query: 130 VWRKSNPM--PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI- 186
           +W K         RGRRF +A    +   P P  + Y   Y       +      DW I 
Sbjct: 220 IWVKPEGAGWATGRGRRF-SADRNPLQYKPVPVTE-YILVY------RKKTDKLIDWHIR 271

Query: 187 --PICSGSERLRNKDG-------------EKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
             P     E+ + +DG              K HP   P +L  +++   +   D+ILDPF
Sbjct: 272 KHPDQKLVEQSKIEDGYEVTNIWKITPAHSKKHPAIFPVSLAEKVIQYYSFVNDVILDPF 331

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            G GT G  A KL R ++  EM  +Y+
Sbjct: 332 GGIGTVGDAANKLNRRYVLFEMNDEYM 358


>gi|300871092|ref|YP_003785964.1| DNA methylase N-4/N-6 domain-containing protein [Brachyspira
           pilosicoli 95/1000]
 gi|300688792|gb|ADK31463.1| DNA methylase N-4/N-6 domain protein-like protein [Brachyspira
           pilosicoli 95/1000]
          Length = 283

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 38/65 (58%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPTQKP AL+ RI+   +   D ILDPF G G++G     + R FIGIE+  +Y D A  
Sbjct: 205 HPTQKPVALMERIVKLISNENDTILDPFMGGGSTGVACINVNRKFIGIELDDEYFDTAVN 264

Query: 264 RIASV 268
           RI   
Sbjct: 265 RITKA 269


>gi|254191985|ref|ZP_04898485.1| DNA methylase [Burkholderia pseudomallei Pasteur 52237]
 gi|157987807|gb|EDO95572.1| DNA methylase [Burkholderia pseudomallei Pasteur 52237]
          Length = 390

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 56/101 (55%), Gaps = 13/101 (12%)

Query: 169 DALKAANEDV----QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
           ++  AA  DV      RS W IP  S        DG   H    PEAL+   +++ ++PG
Sbjct: 289 ESFSAAVTDVVTSRNRRSVWTIPTQS-------FDG--AHFATFPEALVEPCVLAGSRPG 339

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           DI+ DPFFGSGT+G VA++L R F+G E+  DY  +   R+
Sbjct: 340 DIVFDPFFGSGTTGQVAQRLGRRFLGCELNPDYESLQFDRL 380



 Score = 44.3 bits (103), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
           +R+   LQ+  +++  DI+W K NPMP     R   AHE L   S   K++ Y +++DA+
Sbjct: 149 WRLAFALQDAGWYLRQDIIWHKPNPMPESVRDRCTKAHEYLFLLS---KSERYYYDFDAM 205

Query: 172 K 172
           +
Sbjct: 206 Q 206


>gi|330012916|ref|ZP_08307529.1| DNA (cytosine-5-)-methyltransferase [Klebsiella sp. MS 92-3]
 gi|328533644|gb|EGF60352.1| DNA (cytosine-5-)-methyltransferase [Klebsiella sp. MS 92-3]
          Length = 258

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 102/255 (40%), Gaps = 48/255 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I GN I V+   P ++VDLI  DPPY   L G   R    +   VTD W + ++ E Y
Sbjct: 28  RFILGNCIDVMRGFPDRAVDLIVTDPPY---LVGFKDRQGRQIAGDVTDEWLQPATLEMY 84

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK---SNPMP 138
                       RVLK +  +     ++ + R     +   F+ +  +V+ K   SN   
Sbjct: 85  ------------RVLKKDALMVSFYGWNRVDRFMAAWKAAGFYAVGQLVFTKNYASNRRN 132

Query: 139 NFRGRRFQN-AHE---TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
               R F +  HE    L    P P  K      D L               P    +  
Sbjct: 133 ARARRGFVDYCHEGAYVLAKGRPVPPLKPLP---DVLP-------------FPYTGNTLH 176

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
              K  E L P          ++ S + PG I+LDPF GSG++   A +  R +IGIEM 
Sbjct: 177 PTQKPVEALQP----------LIESFSAPGAIVLDPFAGSGSTCVAAYRAGRRYIGIEML 226

Query: 255 QDYIDIATKRIASVQ 269
             Y    T+R+A++ 
Sbjct: 227 AQYHRAGTERLAAMH 241


>gi|308182975|ref|YP_003927102.1| adenine-specific DNA methylase [Helicobacter pylori PeCan4]
 gi|308065160|gb|ADO07052.1| adenine-specific DNA methylase [Helicobacter pylori PeCan4]
          Length = 299

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 46/70 (65%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+ L  T KPEALL RIL  STK  D++ D F GSGT+ AVA K++R +IG+EM + + 
Sbjct: 116 EGQALFDTPKPEALLQRILEISTKENDLVCDFFAGSGTTCAVAHKMKRKYIGVEMGEHFE 175

Query: 259 DIATKRIASV 268
            +   R+  V
Sbjct: 176 SVILPRLKKV 185


>gi|325495846|gb|EGC93706.1| putative methylase [Escherichia fergusonii ECD227]
          Length = 215

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 101/244 (41%), Gaps = 53/244 (21%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           + ++P  ++D I  DPPY   L G   R   ++    TD W + +  E +          
Sbjct: 1   MARIPDNAIDFILTDPPY---LVGFRDRSGRTIAGDKTDEWLQPACNEMF---------- 47

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNFRGRRFQNAH- 149
             RVLK +  +     ++ + R     +N  F ++  +V+ K+      + G R + A+ 
Sbjct: 48  --RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAYVGYRHECAYI 105

Query: 150 ----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
                  +  +P P   G+ ++                                G + HP
Sbjct: 106 LAKGRPRLPQNPLPDVLGWKYS--------------------------------GNRHHP 133

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T+KP   L  ++ + T P  I+LDPF GSG++   A +  R +IGIE+ + Y     +R+
Sbjct: 134 TEKPVTSLQPLIENFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRL 193

Query: 266 ASVQ 269
           A+VQ
Sbjct: 194 AAVQ 197


>gi|332283499|ref|YP_004415410.1| DNA methylase [Pusillimonas sp. T7-7]
 gi|330427452|gb|AEC18786.1| DNA methylase [Pusillimonas sp. T7-7]
          Length = 187

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 45/67 (67%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G KLHPTQKP   L+ ++ + +KPG I+LDPF GSG++   AK+  R +IGIE+   Y  
Sbjct: 116 GNKLHPTQKPVESLAPLVEAFSKPGAIVLDPFAGSGSTCVAAKQAGRRYIGIELDAQYHA 175

Query: 260 IATKRIA 266
           +  +R+A
Sbjct: 176 VGLQRLA 182


>gi|194015228|ref|ZP_03053844.1| DNA methylase [Bacillus pumilus ATCC 7061]
 gi|194012632|gb|EDW22198.1| DNA methylase [Bacillus pumilus ATCC 7061]
          Length = 253

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 113/262 (43%), Gaps = 45/262 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I + + I  +  LP KS+D+I  D PY    N         +V  +   W+++     
Sbjct: 8   NRIYQRDCIEGMRMLPDKSIDMILCDLPYGTTRN------KWDIVIPLDSLWEQYE---- 57

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN-DIVWRKSNPMPN 139
                        RV+K NG + +  +        ++L + N  +   DI W K      
Sbjct: 58  -------------RVVKDNGAIVLTAAQP----FTSLLVSSNPKLFRYDITWDKKQITGF 100

Query: 140 FRGRRFQ-NAHETLI--WASPSPKAKGYTF--NYDALK-------AANEDVQMRSDWLIP 187
              +R     HE ++  +  P      +TF  +Y+  +        +  + + +SD    
Sbjct: 101 LNAKRMPLRKHEDILIFYKKPPTYNPQFTFGDSYEVRRKHSTSNYGSQNENETKSDGRRY 160

Query: 188 ICSGSE--RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
             S  E  ++R K G   HPTQKP  L   ++ + T  GDIILD   GSGT+   A +L 
Sbjct: 161 PTSIIEIPQIREKGG---HPTQKPVKLFEWLIKTFTNEGDIILDSCIGSGTTAVAATQLN 217

Query: 246 RSFIGIEMKQDYIDIATKRIAS 267
           R+FIG E++ +Y   A +R+ S
Sbjct: 218 RNFIGFEIETEYAKRANQRLDS 239


>gi|116687306|ref|YP_840552.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           cenocepacia HI2424]
 gi|116653021|gb|ABK13659.1| DNA methylase N-4/N-6 domain protein [Burkholderia cenocepacia
           HI2424]
          Length = 327

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 44/66 (66%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G + HPT+KP A L  ++ + T+PGD++LDPF GSG++   A++L R +IGIE+   Y  
Sbjct: 250 GNRHHPTEKPVAALRTLISAFTQPGDVVLDPFAGSGSTCVAARELGRRYIGIELDATYFA 309

Query: 260 IATKRI 265
            A  R+
Sbjct: 310 AAKARL 315


>gi|189500189|ref|YP_001959659.1| DNA methylase N-4/N-6 domain-containing protein [Chlorobium
           phaeobacteroides BS1]
 gi|189495630|gb|ACE04178.1| DNA methylase N-4/N-6 domain protein [Chlorobium phaeobacteroides
           BS1]
          Length = 293

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 112/283 (39%), Gaps = 68/283 (24%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQL--YRPDHSLVDAVTDSWDKFSSFEAYDA 83
           G+S   L+K+P  SVDLI   PPY  Q         PDH +                   
Sbjct: 10  GDSQEELKKIPDNSVDLIVTSPPYADQRKKTYGGIHPDHYV------------------- 50

Query: 84  FTRAWLL----ACRRVLKPNGTLW------VIGSYHNIFRIGTMLQ--NLNFWI-LNDIV 130
              +W L       RVLKP GT        V+    + + +  +L+      W+   + +
Sbjct: 51  ---SWFLPIAEQLMRVLKPTGTFVLNIKEKVVNGERSTYVMELILEMRRQQGWLWTEEFI 107

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA------------LKAANEDV 178
           W K N  P     RF+++ E LI  +   K+K +  N +A            LK  +E  
Sbjct: 108 WHKKNCYPGKWPNRFRDSWERLIQFN---KSKQFYMNQEAVMVPMGEWSKTRLKNLSETD 164

Query: 179 QMR-------------SDWL---IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK 222
           ++R             S+WL       +    L  +   K H    PE L    +   TK
Sbjct: 165 KVRDESKVGSGFGKNISNWLDRKKAYPTNVLHLATECNNKKHSAAFPEGLPEWFIRLFTK 224

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
            GD +LDPF GSGT+  VA +++R  IG+++  +Y  +    +
Sbjct: 225 EGDTVLDPFMGSGTTNIVASRMKRHSIGVDILPEYYSMVCDEL 267


>gi|326406568|gb|ADZ63639.1| phage DNA methylase [Lactococcus lactis subsp. lactis CV56]
          Length = 271

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 110/269 (40%), Gaps = 59/269 (21%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   +    ++++P  SVD+I  D PY                     SWD    F+ 
Sbjct: 5   NKIYNEDCSEGMKRIPDGSVDMILCDLPYG----------------TTNCSWDIIIPFD- 47

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                + W     R++K NG + + G+    F     L NL  +   D +W K       
Sbjct: 48  -----KLWK-QYERIIKDNGAIVLTGA--EPFSSHLRLSNLKIYKY-DWIWDK------V 92

Query: 141 RGRRFQNA-------HETL-IWASPSP-----KAKGYTFNYDALKAANE-DV--QMRSDW 184
           +G  F NA       HE + ++    P     K  G+        + ++ DV  +M+ D+
Sbjct: 93  KGTGFLNAKKQPMRNHEIISVFYKNQPTYNPQKTSGHNLKTSFRSSEHQTDVYGEMKQDY 152

Query: 185 LIPICSGSERL--------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
                S +ER          +     LHPTQKP AL   ++ + T  GDI+LD   GSGT
Sbjct: 153 TY---SSTERYPRSIQIFSTDTQNSSLHPTQKPVALFEYLIKTYTNKGDIVLDNCMGSGT 209

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           +        R+FIG E  ++Y + + +RI
Sbjct: 210 TAIACLNTERNFIGFETNEEYYNKSLQRI 238


>gi|154150012|ref|YP_001403630.1| DNA methylase N-4/N-6 domain-containing protein [Candidatus
           Methanoregula boonei 6A8]
 gi|153998564|gb|ABS54987.1| DNA methylase N-4/N-6 domain protein [Methanoregula boonei 6A8]
          Length = 256

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 109/258 (42%), Gaps = 31/258 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +II G+  S    +P + +DL+   PPYN+ +        HS  D +T        ++ Y
Sbjct: 13  EIINGDIFST-RAIPTQGIDLVVTSPPYNVDIRY------HSHDDGLT--------YDEY 57

Query: 82  DAFTRAWLLACRRVLKPNGTLWV-------IGSYHNI-FRIGTMLQNLNFWILNDIVWRK 133
            AF++ W+  C   LKP+G   +        G   ++   +  + +   F   + I+W +
Sbjct: 58  LAFSKRWMKRCFGWLKPDGRFCLNIPLDKNKGGQQSVGADLTAIAKECGFAYHSTIIWNE 117

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
            N         + +A    + A        Y  ++     + +    R +++      + 
Sbjct: 118 GNISRRTAWGSWASASAPYVIAPVELIVVLYKDSWKKTSGSRQSDITREEFM----EWTN 173

Query: 194 RLRNKDGEKL----HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
            L   +GE+     HP   P  L  R +   +  GD +LDPF GSG++   A +  R  I
Sbjct: 174 GLWTFNGERKTRIGHPAPFPVELPLRCMKLFSFVGDTVLDPFMGSGSTLVAASRCDRKAI 233

Query: 250 GIEMKQDYIDIATKRIAS 267
           G+E+   Y ++A KRIA+
Sbjct: 234 GVEIDAHYCELAAKRIAA 251


>gi|206479999|ref|YP_002235510.1| putative methyltransferase [Burkholderia cenocepacia J2315]
 gi|195945155|emb|CAR57782.1| putative methyltransferase [Burkholderia cenocepacia J2315]
          Length = 217

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 44/66 (66%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G + HPT+KP A L  ++ + T+PGD++LDPF GSG++   A++L R +IGIE+   Y  
Sbjct: 140 GNRHHPTEKPVAALRTLISAFTQPGDVVLDPFAGSGSTCVAARELGRRYIGIELDPTYFA 199

Query: 260 IATKRI 265
            A  R+
Sbjct: 200 AAKARL 205


>gi|325107559|ref|YP_004268627.1| DNA methylase N-4/N-6 domain protein [Planctomyces brasiliensis DSM
           5305]
 gi|324967827|gb|ADY58605.1| DNA methylase N-4/N-6 domain protein [Planctomyces brasiliensis DSM
           5305]
          Length = 232

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 107/254 (42%), Gaps = 46/254 (18%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           E+ +++   ++  +L KLP +S+D +  DP Y    N   Y  +  +  A  D       
Sbjct: 3   EFVNQVFHADARHLLAKLPEESIDAVICDPMYGTAKN---YEYEWGIDPANGDP------ 53

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            E +  + +     CRRVLKP G L W  G+           ++   W+ N  VW     
Sbjct: 54  -ELHWEYHKPIYEECRRVLKPGGALAWGQGA--------KFCEHFQDWLGNHRVWT---- 100

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED-VQMRSDWLIPICSGSERL 195
           +  FR                 PK K  T +   ++   +  + M     + IC     +
Sbjct: 101 ITRFR-----------------PKGKSATGHAWVVQTREQKPIPMPDRDSLVICDNVGPI 143

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           R     KLHP  K    L  ++   TKPGDI+LD   G G++   A++L R +IG ++ Q
Sbjct: 144 R-----KLHPCIKMVEELKFVVEELTKPGDIVLDCCCGLGSTLLAAEQLGRRWIGCDISQ 198

Query: 256 DYIDIATKRIASVQ 269
            Y  IA  R+ +++
Sbjct: 199 RYSQIAKLRMENLR 212


>gi|208435263|ref|YP_002266929.1| adenine-specific DNA methylase [Helicobacter pylori G27]
 gi|208433192|gb|ACI28063.1| adenine-specific DNA methylase [Helicobacter pylori G27]
          Length = 299

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 47/70 (67%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+ L  T KPEALL RIL  ST+  D++LD F GSGT+ AVA K++R +IG+EM + + 
Sbjct: 116 EGQALFDTPKPEALLQRILEISTQENDLVLDFFAGSGTTCAVAHKMKRKYIGVEMGEHFE 175

Query: 259 DIATKRIASV 268
            +   R+  V
Sbjct: 176 CVILPRLKKV 185


>gi|308062667|gb|ADO04555.1| type III R-M system methyltransferase [Helicobacter pylori Cuz20]
          Length = 657

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 45/62 (72%), Gaps = 1/62 (1%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           L   +KPEAL+SRIL  ST+  D++LD F GSGT+ AVA K++R +IGIE + DYI+  T
Sbjct: 472 LKNGKKPEALISRILEVSTQENDLVLDFFAGSGTTCAVAHKMKRRYIGIE-QMDYIETIT 530

Query: 263 KR 264
           K 
Sbjct: 531 KE 532


>gi|254779922|ref|YP_003058028.1| putative type III restriction enzyme M protein [Helicobacter pylori
           B38]
 gi|254001834|emb|CAX30077.1| Putative type III restriction enzyme M protein [Helicobacter pylori
           B38]
          Length = 626

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 49/74 (66%), Gaps = 1/74 (1%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           G+E ++     ++    KPEALL RIL  STK  D++LD F GSGT+ AVA K++R +IG
Sbjct: 429 GTEEVKQIFKTQIFDFPKPEALLQRILEISTKENDLVLDFFAGSGTTCAVAHKMKRRYIG 488

Query: 251 IEMKQDYIDIATKR 264
           IE + DYI+  TK 
Sbjct: 489 IE-QMDYIETITKE 501


>gi|148271668|ref|YP_001221229.1| putative adenine-specific DNA-modification methylase [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147829598|emb|CAN00513.1| putative adenine-specific DNA-modification methylase [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 348

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 100/225 (44%), Gaps = 31/225 (13%)

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKS 134
           SF  Y  F    L+   R+L P GTL++   Y  +     +L  L      LN+IVW   
Sbjct: 135 SFADYWDFLEPRLIEAWRLLDPTGTLYLHLDYREVHYAKVVLDALFGRRSFLNEIVWAYD 194

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL------------KAANEDVQMRS 182
               + R  R+   H+T++     P    Y F+ + +                E  ++ +
Sbjct: 195 YGAKSRR--RWPAKHDTILVYVKDPVR--YRFDSEGVDREPYMAPGLVTPEKRERGKLPT 250

Query: 183 D-WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
           D W   I S + R +       + TQKP  +L RI+ +S++PGD +LD F GSGT+GA A
Sbjct: 251 DVWWHTIVSPTGREKTG-----YATQKPLGVLRRIVQASSRPGDWVLDFFAGSGTTGAAA 305

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
           ++L R F+ ++     +++   R+A          TV     TEP
Sbjct: 306 RELGRRFVLVDENPQAVEVMRARLAGGG-------TVFVEPETEP 343


>gi|154249220|ref|YP_001410045.1| DNA methylase N-4/N-6 domain-containing protein [Fervidobacterium
           nodosum Rt17-B1]
 gi|154153156|gb|ABS60388.1| DNA methylase N-4/N-6 domain protein [Fervidobacterium nodosum
           Rt17-B1]
          Length = 284

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 113/279 (40%), Gaps = 36/279 (12%)

Query: 5   NSLAINENQNSIF----EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           N L + +N+  IF    + K KII  + I+    +   S+DLI   PPYN+ ++   +  
Sbjct: 9   NDLLLRQNEKKIFFETEDGKIKIIHDDFITT-NLIEENSIDLIITSPPYNVNIHYNSFSD 67

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV-----------IGSYH 109
           D                +E Y  FT  WL     ++KP+G + +              + 
Sbjct: 68  D--------------IPYEKYTEFTEKWLKKAYSLVKPDGRMCLNIPLDKSKGREEAGFQ 113

Query: 110 NIFR-IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
           +++  I  + + + +   + I+W + N         + +A    + A        Y   +
Sbjct: 114 SVYADIVNIAKKVGWKYFSTIIWNEGNISRRTAWGSWLSARAPYVIAPVETIVILYKEKW 173

Query: 169 DALKAANEDVQMRS--DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
             +K    D+      +W   + + S   + K G   HP   P  L  R +   +   D 
Sbjct: 174 RKIKEGESDITREEFMEWTNGLWTFSGESKKKVG---HPAPFPIELPKRCIKLFSYTNDT 230

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           ILDPF GSG++      L R  IG+E+ ++Y  +AT R+
Sbjct: 231 ILDPFLGSGSTLIACALLNRKGIGVEIDENYCKLATNRL 269


>gi|206889804|ref|YP_002249010.1| modification methylase [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741742|gb|ACI20799.1| modification methylase [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 684

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 135/344 (39%), Gaps = 112/344 (32%)

Query: 18  EWKDKIIKGNSISVLEKLPAKS-----------VDLIFADPPYNLQLNGQLYRPDHSLVD 66
           EW++ I+ G+++  L+ +               V LI+ DPP+                 
Sbjct: 80  EWRNMIVFGDNLQFLKTVYENKDPLIKDRVKGKVKLIYIDPPF----------------- 122

Query: 67  AVTDSWDKFSSFEAYDA---------FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
              D +D     +AY A         F R  L+  R +L  +G+++V   YH    +  +
Sbjct: 123 GTGDEYDANRGQKAYSARAKGAEFVEFLRRRLILAREILADDGSIFVRQDYHFGHYVKVI 182

Query: 118 LQNL----NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS--------------- 158
           +  +    NF  LN+I+  +      F   R+  A++ L W S +               
Sbjct: 183 MDEVFGKENF--LNEIIVARITK-KGFGANRYPTANDYLFWYSKTSDYFFKPYRKPLNSK 239

Query: 159 -----------------------------PKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
                                        PK + +TF+ + +       +M  + LI + 
Sbjct: 240 KEKWHSMDSMSGGRKTGEPRFILGEMRYPPKGRVWTFSQERI------FEMEKEGLIKLN 293

Query: 190 SGSE---RLRNKDGEKL---------------HPTQKPEALLSRILVSSTKPGDIILDPF 231
           S      ++  ++GE L               +PT+  E LL RI+ S+T+P D++LD F
Sbjct: 294 SKGRPIYKVLTQEGEPLDSNWTDIPGYSFTTDYPTENSEQLLERIIKSTTQPNDLVLDFF 353

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
            GSGT+ AVA+KL R +I  ++ +       KRI ++Q   ++E
Sbjct: 354 AGSGTTAAVAEKLGRRWIVCDIGKLAFYTMQKRILTIQDSKDLE 397


>gi|260751833|ref|YP_003232554.1| putative DNA modification methylase [Escherichia coli O26:H11 str.
           11368]
 gi|462649|sp|Q04845|MTC1_CITFR RecName: Full=Modification methylase CfrBI; Short=M.CfrBI; AltName:
           Full=N(4)- cytosine-specific methyltransferase CfrBI
 gi|40477|emb|CAA41012.1| nicotinamide methyltransferase [Citrobacter freundii]
 gi|257757380|dbj|BAI28879.1| putative DNA modification methylase [Escherichia coli O26:H11 str.
           11368]
          Length = 376

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 109/272 (40%), Gaps = 59/272 (21%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +++GN    L+KLP +SV+L+F  PPY    N    +P++S          ++ +++ Y 
Sbjct: 115 LLQGNCAETLKKLPDESVNLVFTSPPY---YNA---KPEYS----------EYHTYDEYL 158

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFR----------------IGTMLQNLNFWIL 126
           +  R+ +  C RVL   G  +VI     + R                +  +     +  +
Sbjct: 159 SLLRSVIKECHRVLS-EGRFFVINVSPVLIRRASRNEASKRIAVPFDLHRLFIEEGYEFI 217

Query: 127 NDIVWRKSNPM--PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
           +DI W K         RGRRF      L +  P P  + Y   Y       +      DW
Sbjct: 218 DDIHWVKPEGAGWALGRGRRFAADRNPLQY-KPVPVTE-YILVY------RKKTDKLIDW 269

Query: 185 LIPICSGSERLRNK----DGEKL------------HPTQKPEALLSRILVSSTKPGDIIL 228
            I      E + +     D EK             HP   P  L  R++   +   D+IL
Sbjct: 270 NIRNHHSKEDVFDSKIGDDYEKTNLWKINPSRNRKHPATFPYGLAERVIKYYSFKNDVIL 329

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           DPF GSGT+   A  L R F+  E+ + YID+
Sbjct: 330 DPFAGSGTTAKAAIDLGRRFVMCEISKQYIDL 361


>gi|332086446|gb|EGI91593.1| hypothetical protein SD15574_3806 [Shigella dysenteriae 155-74]
          Length = 197

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 79/153 (51%), Gaps = 26/153 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLL----ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            F   WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 60  LFI-DWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
             + + + + +E ++       AK YTFN DA+
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAI 147


>gi|213417795|ref|ZP_03350907.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 103

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 22/94 (23%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G++++ L+KLP++S+DLIFADPPYN+  +           D + +SWD+ S     
Sbjct: 16  KIIHGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDEASFL--- 62

Query: 82  DAFTRAWLL----ACRRVLKPNGTLWVIGSYHNI 111
                AWL      C RVLK +GT++++ S  N+
Sbjct: 63  -----AWLYECIDECHRVLKKHGTMYIMNSTENM 91


>gi|154148655|ref|YP_001406623.1| modification methylase CcrMI (adenine-specificmethyltransferase
          CcrMI) (M.CcrMI) [Campylobacter hominis ATCC BAA-381]
 gi|153804664|gb|ABS51671.1| modification methylase CcrMI (Adenine-specificmethyltransferase
          CcrMI) (M.CcrMI) [Campylobacter hominis ATCC BAA-381]
          Length = 88

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 1/81 (1%)

Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSF 78
          K+ I++G+ + +L+ LP KS+DLIFADPPY ++++G L RP+        D  D  F + 
Sbjct: 3  KNTILQGDCLKILKTLPDKSIDLIFADPPYWMRVDGILKRPEGENFSGCDDKRDNNFLNN 62

Query: 79 EAYDAFTRAWLLACRRVLKPN 99
          + Y  FT  WL  C+ VLK N
Sbjct: 63 DDYSQFTEKWLNECKIVLKNN 83


>gi|327474985|gb|AEA77090.1| M.StyI [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 376

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 109/272 (40%), Gaps = 59/272 (21%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +++GN    L+KLP +SV+L+F  PPY    N    +P++S          ++ +++ Y 
Sbjct: 115 LLQGNCAETLKKLPDESVNLVFTSPPY---YNA---KPEYS----------EYHTYDEYL 158

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFR----------------IGTMLQNLNFWIL 126
           +  R+ +  C RVL   G  +VI     + R                +  +     +  +
Sbjct: 159 SLLRSVIKECHRVLS-EGRFFVINVSPVLIRRASRNEASKRIAVPFDLHRLFIEEGYEFI 217

Query: 127 NDIVWRKSNPM--PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
           +DI W K         RGRRF      L +  P P  + Y   Y       +      DW
Sbjct: 218 DDIHWVKPEGAGWALGRGRRFAADRNPLQY-KPVPVTE-YILVY------RKKTDKLIDW 269

Query: 185 LIPICSGSERLRNK----DGEKL------------HPTQKPEALLSRILVSSTKPGDIIL 228
            I      E + +     D EK             HP   P  L  R++   +   D+IL
Sbjct: 270 NIRNHHSKEDVFDSKIGDDYEKTNLWKINPSRNRKHPATFPYGLAERVIKYYSFKNDVIL 329

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           DPF GSGT+   A  L R F+  E+ + YID+
Sbjct: 330 DPFAGSGTTAKAAIDLGRRFVMCEISKQYIDL 361


>gi|326388796|ref|ZP_08210380.1| DNA methylase N-4/N-6 [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206706|gb|EGD57539.1| DNA methylase N-4/N-6 [Novosphingobium nitrogenifigens DSM 19370]
          Length = 512

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 76/167 (45%), Gaps = 12/167 (7%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T KPE LL RIL  +T PGD++LD F GSGT+ AVA K+ RS+IGIEM    +     R+
Sbjct: 306 TPKPERLLERILHIATNPGDLVLDSFLGSGTTAAVAHKMGRSWIGIEMGDHAVSHCAPRL 365

Query: 266 ASV--QPLGNIELTV---LTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNI-------S 313
             V     G I   +     G  T  R+   +  + G I PG   T    +I        
Sbjct: 366 HKVIDGEQGGISEAIGWKGGGGFTFYRLGEAVFDDTGAINPGIAFTPLAAHIWFAETGQP 425

Query: 314 ATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
                +G  +   + G +  +   + G ++ +G N    + LG + +
Sbjct: 426 MAAAHNGPFLGSHDGGGLALLYNGILGDKSVSGGNVLTRKTLGMIRA 472


>gi|324120124|ref|YP_004249885.1| hypothetical protein pc15-k-034 [Klebsiella pneumoniae]
 gi|323388252|gb|ADX60401.1| hypothetical protein pc15-k-034 [Klebsiella pneumoniae]
          Length = 258

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 101/255 (39%), Gaps = 48/255 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I GN I V+   P ++VDLI  DPPY +       R    +   VTD W + ++ E Y
Sbjct: 28  RFILGNCIDVMRGFPDRAVDLIVTDPPYVVGFKD---RQGRQIAGDVTDEWLQPATLEMY 84

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK---SNPMP 138
                       RVLK +  +     ++ + R     +   F+ +  +V+ K   SN   
Sbjct: 85  ------------RVLKKDALMVSFYGWNRVDRFMAAWKAAGFYAVGQLVFTKNYASNRRN 132

Query: 139 NFRGRRFQN-AHE---TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
               R F +  HE    L    P P  K      D L               P    +  
Sbjct: 133 ARARRGFVDYCHEGAYVLAKGRPVPPLKPLP---DVLP-------------FPYTGNALH 176

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
              K  E L P          ++ S + PG I+LDPF GSG++   A +  R +IGIEM 
Sbjct: 177 PTQKPVEALQP----------LIESFSAPGAIVLDPFAGSGSTCVAAYRAGRRYIGIEML 226

Query: 255 QDYIDIATKRIASVQ 269
             Y    T+R+A++ 
Sbjct: 227 AQYHRAGTERLAAMH 241


>gi|300119345|ref|ZP_07057018.1| type III restriction-modification system, Mod subunit [Bacillus
           cereus SJ1]
 gi|298723273|gb|EFI64042.1| type III restriction-modification system, Mod subunit [Bacillus
           cereus SJ1]
          Length = 175

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 52/76 (68%), Gaps = 1/76 (1%)

Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           L ++  E+L +PTQKPEALL RI+ S+T+ GD++ D F GSGT+ AVA+KL R +I  ++
Sbjct: 91  LHHELAERLEYPTQKPEALLRRIIKSATRKGDLVADFFVGSGTTAAVAEKLGRRWIATDL 150

Query: 254 KQDYIDIATKRIASVQ 269
            +  I    KR+  VQ
Sbjct: 151 GKFGIHTTRKRLIGVQ 166


>gi|324015250|gb|EGB84469.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 60-1]
          Length = 193

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 95/242 (39%), Gaps = 61/242 (25%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY   L G   R   ++   V D W + +S E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPY---LVGFRDRSGRTIAGDVNDDWLQPASNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                       RVLK +  +     ++ + R     +   F +   +V+ K        
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKRAGFSVAGHLVFTK-------- 99

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS-ERLRNK-- 198
                                    NY +  A    V  R +    +  GS  R RN   
Sbjct: 100 -------------------------NYTSKSAY---VAYRHECAYILAKGSPARPRNPLP 131

Query: 199 -------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
                   G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGI
Sbjct: 132 DVLGWKYSGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGI 191

Query: 252 EM 253
           E+
Sbjct: 192 EL 193


>gi|254507558|ref|ZP_05119691.1| DNA methylase [Vibrio parahaemolyticus 16]
 gi|219549445|gb|EED26437.1| DNA methylase [Vibrio parahaemolyticus 16]
          Length = 231

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 106/232 (45%), Gaps = 37/232 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVD-AVTDSWDKFSSFEA 80
           + + +++  L  L   SVDL+  DPPY +L+ + ++       V  A ++ W     FE 
Sbjct: 16  LFQDDAVKWLSTLDTASVDLLITDPPYESLEKHRKIGTTTRLKVSKASSNQW-----FEI 70

Query: 81  Y--DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +  D F  A L    RVLK +   ++      +F I  + + + F     IVW K +   
Sbjct: 71  FPNDRF-EALLSEVYRVLKNHSHFYLFCDQETMFVIKPIAEKIGFKFWKPIVWDKVSIG- 128

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
              G  ++  HE +++     +                     +D  IP     + L +K
Sbjct: 129 --MGYHYRARHEYILFFEKGKRK-------------------LNDLSIP-----DILTHK 162

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
              + +PT+KP +LL  ++V S++ G++++DPFFGSG++   +K L R F G
Sbjct: 163 RVYRGYPTEKPVSLLEVLVVQSSREGELVVDPFFGSGSTLVASKNLNRQFKG 214


>gi|153869323|ref|ZP_01998963.1| DNA methylase N-4/N-6 [Beggiatoa sp. PS]
 gi|152074153|gb|EDN71039.1| DNA methylase N-4/N-6 [Beggiatoa sp. PS]
          Length = 194

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 74/152 (48%), Gaps = 20/152 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I  G++I + + +   S+DLI ADPPYNL   G+ Y  +H L            +F+ Y
Sbjct: 19  EIKPGDAIDLFQDIKDDSIDLIIADPPYNL---GKDYGNNHDL-----------KAFDDY 64

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNI-FRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
             F++ WL   +RVLKP GT++V      I +    M + LN    + I W  +  M   
Sbjct: 65  INFSKKWLSQAKRVLKPTGTIYVFMGVKFISYLYNIMDRELNLCFNSWICWHYTQGMGKT 124

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
            G  F   H+ ++  +   K K Y FN DA++
Sbjct: 125 MG--FSPRHDDILMFN---KTKTYVFNLDAIR 151


>gi|163731832|ref|ZP_02139279.1| hemagglutinin-associated protein [Roseobacter litoralis Och 149]
 gi|161395286|gb|EDQ19608.1| hemagglutinin-associated protein [Roseobacter litoralis Och 149]
          Length = 226

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 108/250 (43%), Gaps = 43/250 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++II G++ +VL+ +   S+DL+  DPPY +    +  R       ++ +  +       
Sbjct: 4   NQIIHGDAAAVLKTIEEGSIDLVITDPPYLVNYKDRQGR-------SLQNDNNPGGVLPV 56

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW-RKSNPMPN 139
           ++   RA        +K N        +  + +     +     I+++IVW +K      
Sbjct: 57  FEPMARA--------MKQNSYAICFSGWSALPQFTQAWEAAGLKIVSEIVWSKKYTSRRG 108

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           F   R ++A+  L   +P+   +  +            VQ    W+              
Sbjct: 109 FTQYRHESAY-VLAKGNPAKPVRPMS-----------SVQ---GWVY------------S 141

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K HPT+K   +L+ ++   ++PGD++ DPF GSG++   A    R ++GIE+++ + D
Sbjct: 142 GNKRHPTEKAVEILAPLVRCFSRPGDLVCDPFSGSGSTSVAAVLNGRDYLGIELEKAHCD 201

Query: 260 IATKRIASVQ 269
            A  R+A  Q
Sbjct: 202 TARARLAGAQ 211


>gi|15612361|ref|NP_224014.1| putative type III DNA modification enzyme (methyltransferase)
           [Helicobacter pylori J99]
 gi|4155899|gb|AAD06869.1| putative TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
           [Helicobacter pylori J99]
          Length = 620

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 43/62 (69%), Gaps = 1/62 (1%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           L  T KPEALL RIL  ST   D++LD F GSGT+ AVA K++R +IGIE + DYI+  T
Sbjct: 435 LFSTPKPEALLQRILEISTNENDLVLDFFAGSGTTCAVAHKMKRRYIGIE-QMDYIETIT 493

Query: 263 KR 264
           K 
Sbjct: 494 KE 495


>gi|150958528|gb|ABR80555.1| hypothetical protein KPN_pKPN5p08175 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 258

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 102/255 (40%), Gaps = 48/255 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I GN I V+   P ++VDLI  DPPY   L G   R    +   VTD W + ++ E Y
Sbjct: 28  RFILGNCIDVMRGFPDRAVDLIVTDPPY---LVGFKDRQGRQIAGDVTDEWLQPATLEMY 84

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK---SNPMP 138
                       RVLK +  +    S++ + R     +   F+ +  +V+ K   SN   
Sbjct: 85  ------------RVLKKDALMVSFYSWNRVDRFMAAWKAAGFYAVGQLVFTKNYASNRRN 132

Query: 139 NFRGRRFQN-AHE---TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
               R F +  HE    L    P P  K      D L               P    +  
Sbjct: 133 ARARRGFVDYCHEGAYVLAKGRPVPPLKPLP---DVLP-------------FPYTGNTLH 176

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
              K  E L P          ++ S + PG I+LDPF GSG++   A +  R +IGIEM 
Sbjct: 177 PTQKPVEALQP----------LIESFSAPGAIVLDPFAGSGSTCVAAYRAGRRYIGIEML 226

Query: 255 QDYIDIATKRIASVQ 269
             Y    T+R+ ++ 
Sbjct: 227 AQYHRAGTERLDAMH 241


>gi|90578026|ref|ZP_01233837.1| haemagglutinin associated protein [Vibrio angustum S14]
 gi|90441112|gb|EAS66292.1| haemagglutinin associated protein [Vibrio angustum S14]
          Length = 219

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 98/246 (39%), Gaps = 57/246 (23%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSFEA 80
           +I + ++I  L  LP +S+DL+  DPPY            H  V   T     K SS + 
Sbjct: 2   QIFQKDAIEWLTALPDQSIDLMITDPPYE-------SLEKHRSVGTTTRLKQSKGSSNQW 54

Query: 81  YDAFT----RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           +D F      + L    RVLK N   ++      +F I  + + + F     IVW K   
Sbjct: 55  FDIFPNERFESLLTQAYRVLKQNSHFYLFCDQETMFHIKPIAEQVGFKFWKPIVWDKV-- 112

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
                                   A G  ++Y A          R ++++    G  +L 
Sbjct: 113 ------------------------AIGMGYHYRA----------RYEFILFFEKGKRKLN 138

Query: 197 N---------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           N         K   + +PT+KP  LL  ++  S+  GD+I DPFFGSG++   A KL R 
Sbjct: 139 NLSIPDVLECKRVYRGYPTEKPVPLLEILIEQSSVEGDVIADPFFGSGSTLVAADKLSRQ 198

Query: 248 FIGIEM 253
             G ++
Sbjct: 199 AWGSDI 204


>gi|317178104|dbj|BAJ55893.1| putative type III restriction enzyme M protein [Helicobacter pylori
           F16]
          Length = 657

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 45/62 (72%), Gaps = 1/62 (1%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           L   +KPEAL+SRIL  ST+  D++LD F GSGT+ AVA K++R +IGIE + DYI+  T
Sbjct: 472 LKNGKKPEALISRILEISTQENDLVLDFFAGSGTTCAVAHKMKRRYIGIE-QMDYIETIT 530

Query: 263 KR 264
           K 
Sbjct: 531 KE 532


>gi|294084850|ref|YP_003551610.1| DNA methylase N-4/N-6 domain-containing protein [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292664425|gb|ADE39526.1| DNA methylase N-4/N-6 domain protein [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 754

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 63/111 (56%), Gaps = 11/111 (9%)

Query: 159 PKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILV 218
           P+ K Y    D +  A+  +Q   D ++PI S S      D    +PTQKPEAL+ RI+ 
Sbjct: 331 PRLKQYL---DEMDGAS--IQTIWDDILPIVSWS------DERSGYPTQKPEALVDRIIQ 379

Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           +ST   DI+ D F GSGT+ AVA+KL R +I  ++ +  I  A KR+  VQ
Sbjct: 380 ASTNEDDIVCDFFIGSGTTAAVAEKLGRKWICSDLGKFSIHTARKRLIGVQ 430


>gi|330399501|ref|YP_004030599.1| adenine-specific methyltransferase [Burkholderia rhizoxinica HKI
           454]
 gi|312170238|emb|CBW77277.1| Adenine-specific methyltransferase (EC 2.1.1.72) [Burkholderia
           rhizoxinica HKI 454]
          Length = 237

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 94/247 (38%), Gaps = 49/247 (19%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+ +  + KL ++SVD +  DPPY +       R   ++ +   D W   +  E + 
Sbjct: 28  LYHGDCLVAMPKLASESVDCVVTDPPYLVNYRD---RGGRTIANDSNDEWLAPAFAEMF- 83

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
                      RVLK +       S++   R     +   F I   +V+ KS        
Sbjct: 84  -----------RVLKRDAVCISFYSWNKADRFFLAWKAAGFRIAGHLVFTKSYSSKAGLV 132

Query: 143 RRFQNAHETLIWASP----SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           R    +   L    P     P A    F Y                              
Sbjct: 133 RYQHESAYVLAKGRPPVLAQPIADVVPFPYS----------------------------- 163

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            G + HPT+KP + L  ++ + T PGD +LDPF GSG++   A++L R +IGIE+   Y 
Sbjct: 164 -GNRHHPTEKPVSSLRTLIQAFTNPGDTVLDPFAGSGSTCVAARELGRRYIGIELDARYF 222

Query: 259 DIATKRI 265
             A  R+
Sbjct: 223 TAAKARL 229


>gi|170780698|ref|YP_001709030.1| putative DNA methylase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169155266|emb|CAQ00367.1| putative DNA methylase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 334

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 123/297 (41%), Gaps = 46/297 (15%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
           A++ + ++  +     +   S +  E        L F    YN  + G LY       D+
Sbjct: 69  AVDADPDAAPDTAPPALAPASTATPEPARPPGARLGFHGRSYN-SVKGMLY----GFDDS 123

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWI 125
             D WD          F    L+   R+L P GTL++   Y  +     +L  L      
Sbjct: 124 FADYWD----------FLEPRLIEAWRLLDPTGTLYLHLDYREVHYAKVVLDALFGRRSF 173

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK------------A 173
           LN+IVW       +   RR+   H+T++     P    Y F+ + +              
Sbjct: 174 LNEIVWAYDYGAKS--RRRWPAKHDTILVYVKDPLR--YRFDSEGVDREPYMAPGLVTPE 229

Query: 174 ANEDVQMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
             E  ++ +D W   I S + R   K G   + TQKP  +L RI+ +S++PGD +LD F 
Sbjct: 230 KRERGKLPTDVWWHTIVSPTGR--EKTG---YATQKPLGVLRRIVQASSRPGDWVLDFFA 284

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
           GSGT+GA A++L R F+ ++     +++   R+           TV  G+  +P V 
Sbjct: 285 GSGTTGAAARELGRRFVLVDENPQAVEVMRARLTGGG-------TVFVGQDEDPPVG 334


>gi|290956711|ref|YP_003487893.1| DNA methylase [Streptomyces scabiei 87.22]
 gi|260646237|emb|CBG69332.1| putative DNA methylase [Streptomyces scabiei 87.22]
          Length = 251

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 106/254 (41%), Gaps = 39/254 (15%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYN----------LQLNGQLYR---PDHSLVDAVTDS 71
           +G+++SVL  LP   VD +  DPPYN           +   Q Y      H+L D   ++
Sbjct: 7   QGDALSVLADLPDDCVDSVITDPPYNSGGRTAKERTTRSAKQKYTSADAQHTLPDFTGEN 66

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
            D+ S    Y  +    +    R+ +  GT  +   +  +      +Q   +     + W
Sbjct: 67  MDQRS----YGFWLTQIMTEAHRLTRTGGTALLFTDWRQLPVTTDAIQAAGWLWRGVLAW 122

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
            K    P  +GR  QN  E ++WAS     KG      A+  +   V +   +     SG
Sbjct: 123 HKPQARPQ-KGRFTQNC-EFIVWAS-----KG------AIDGSRNPVYLPGMYSASQPSG 169

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           ++R         H TQKP  ++ R LV  +  G  +LD   GSG++G  A    R FIG+
Sbjct: 170 AKRQ--------HITQKPVEVM-RELVKISPEGGTVLDFCAGSGSTGVAALLEGRDFIGV 220

Query: 252 EMKQDYIDIATKRI 265
           E  + Y  IA  R+
Sbjct: 221 EKTEHYASIAADRL 234


>gi|262113732|emb|CAR95399.1| hypothetical protein [Streptococcus phage phi-m46.1]
          Length = 442

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 124/269 (46%), Gaps = 39/269 (14%)

Query: 20  KDKIIKGNSISVL---EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K ++I G+S  V    + L  K  +L+  DPPYN+ +     +    L D + DS  +F 
Sbjct: 195 KHRVICGDSTKVETYEQLLGDKKANLVVTDPPYNVDVEETAGK---ILNDNMPDS--EFY 249

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            F  +D FT+       + ++ + +++V  +           ++  F++    +W+K++ 
Sbjct: 250 QF-LFDMFTQV-----EKHIESDASIYVFHADTEGLNFRKAFKDAGFYLSGCCIWKKTSL 303

Query: 137 MPNFRGRR-FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           +    GR  +Q  HE  ++     K K   F+         D +  + W        E  
Sbjct: 304 V---LGRSPYQWQHEPCLFGWKQ-KGKHQWFS---------DRKQTTIW--------EYD 342

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           R K   K HPT KP  L++  + +S+  G ++LDPF GSG++   A +  R   GIE+ +
Sbjct: 343 RPK-SSKDHPTMKPIPLMAYPIQNSSMRGTLVLDPFLGSGSTLMAADQTGRVCYGIELDE 401

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRT 284
            ++D+  KR   ++  GN  +TVL   +T
Sbjct: 402 KFVDVIVKRY--IESTGNDNVTVLRDGQT 428


>gi|242309402|ref|ZP_04808557.1| modification methylase HhaII [Helicobacter pullorum MIT 98-5489]
 gi|239523973|gb|EEQ63839.1| modification methylase HhaII [Helicobacter pullorum MIT 98-5489]
          Length = 213

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 103/229 (44%), Gaps = 27/229 (11%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           + +++L+ L + S+DL F DP Y   L+   Y  +            + +  +  +   +
Sbjct: 9   DGLTLLKSLESASIDLCFFDPQYRGVLDKMRYGNEGERQKG------RSALIQMSEESIK 62

Query: 87  AWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
           ++++   RVLKP+  L + I  +H    +G  L +    I++ I W K      +R R+ 
Sbjct: 63  SFIIEINRVLKPSCYLMLWIDKFHLCEGVGAWLDSTLLQIVDLITWDKGKMGMGYRTRK- 121

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
           Q+ +  +I   P  KAKG T+    ++    +         P+        +K+  K HP
Sbjct: 122 QSEYLLVIQKKPI-KAKG-TWKLHTIRDVCHE---------PL--------SKEELKAHP 162

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
             KP+ L   ++ S T  GD++ DP  GS +     K+L R FIG  +K
Sbjct: 163 HSKPKKLQKMLIESCTNKGDLVCDPAAGSFSVFECCKELERDFIGTNLK 211


>gi|294338307|emb|CBJ94346.1| Possible phage DNA methylase [Campylobacter phage CPt10]
          Length = 221

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 106/246 (43%), Gaps = 33/246 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +II  + +++LE +  ++VDLI  DPPY +   G+     +         WD F + + +
Sbjct: 4   EIINDDCLNILENI--RNVDLIITDPPYFVIPKGKKTNNGYD-----NFKWDSFDNMDHF 56

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             FT+ W   C + L  +  +++  S    F  G  + N N  +L    W   N +    
Sbjct: 57  LKFTKEWFDLCYKKLNNDSFMYIFWS-QKYFSYGFEIFNPNRVLL----WHYRNLVLGGN 111

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G    +     +    +PK          +K  +            I + ++   N   +
Sbjct: 112 GDFAYDYEPIFVIKKGNPKL---------IKGKHSS----------ILNFTKPQSNFKAD 152

Query: 202 KL-HPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           KL HPTQKP  L+  ++ +S+ K   +ILDPF G+GT+   +  L+   I IE +  Y +
Sbjct: 153 KLVHPTQKPLKLIEYLISISNLKENAVILDPFGGAGTTALASNNLKYDCITIEKETGYCN 212

Query: 260 IATKRI 265
           +   R+
Sbjct: 213 LINNRL 218


>gi|53802972|ref|YP_115293.1| prophage MuMc02, DNA methyltransferase [Methylococcus capsulatus
           str. Bath]
 gi|53756733|gb|AAU91024.1| prophage MuMc02, DNA methyltransferase [Methylococcus capsulatus
           str. Bath]
          Length = 265

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 96/247 (38%), Gaps = 42/247 (17%)

Query: 39  SVDLIFADPPYN---------LQLNGQLY-RPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
           SV  +  DPPY          L+ +   Y   D S    + D        EA+    +A 
Sbjct: 27  SVAAVITDPPYGSGGFTVKDRLKSSKTKYVSSDASYQKTLPDIDGDSLHPEAWKELMKAA 86

Query: 89  LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN---PMPNFRGRRF 145
               R VL   G L +   + N  ++  ++      +   + W K N   PM N     F
Sbjct: 87  CAVARSVLMNGGVLAMFIDWRNKPQLQEIIHGSGLALRGCVAWDKGNGARPMKN----GF 142

Query: 146 QNAHETLIWAS--PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
           +N  E L+WA+  P+P  +   +    L+ +                    L N    K+
Sbjct: 143 KNQAEYLLWATQGPTPTREPPVYLPGVLRHST-------------------LSNG---KV 180

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           H TQKP AL+  I V    PG  + D F GSGT+G  A K  R FIG E   +Y D + +
Sbjct: 181 HITQKPLALMEDI-VQVCPPGGTVFDMFMGSGTTGVAALKHGRRFIGCESVPEYFDASVR 239

Query: 264 RIASVQP 270
           R     P
Sbjct: 240 RCREACP 246


>gi|298252318|ref|ZP_06976120.1| DNA methylase N-4/N-6 domain protein [Ktedonobacter racemifer DSM
           44963]
 gi|297545738|gb|EFH79607.1| DNA methylase N-4/N-6 domain protein [Ktedonobacter racemifer DSM
           44963]
          Length = 567

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 57/94 (60%), Gaps = 8/94 (8%)

Query: 178 VQMRSDWLIPICS-GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
           VQ   D + PI S  +ERL        +PTQKP ALL RI+ +S+ PG +ILDPF G GT
Sbjct: 283 VQNLWDDIPPISSQAAERLG-------YPTQKPLALLERIIAASSNPGCVILDPFCGCGT 335

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
           + A A+KL R +IGI++    I +   R+ ++ P
Sbjct: 336 AIAAAQKLERKWIGIDVTHLSIALQKYRLEAMFP 369


>gi|229846088|ref|ZP_04466200.1| putative type III restriction/modification system modification
           methylase [Haemophilus influenzae 7P49H1]
 gi|229811092|gb|EEP46809.1| putative type III restriction/modification system modification
           methylase [Haemophilus influenzae 7P49H1]
          Length = 581

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 52/80 (65%), Gaps = 2/80 (2%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           +G+E+++N  GEK+    KPE L+   +  +T   DIILD   GSGT+ AVA K+ R +I
Sbjct: 365 NGTEQMKNLFGEKVFKNPKPEELIQDFITITTNENDIILDYHLGSGTTAAVAHKMNRQYI 424

Query: 250 GIEMKQDYID-IATKRIASV 268
           GIE + DYI+ +A +R+  V
Sbjct: 425 GIE-QMDYIETLAVERLKKV 443


>gi|163716605|gb|ABY40517.1| putative DNA cytosine methylase [Burkholderia phage Bups phi1]
          Length = 363

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 9/79 (11%)

Query: 196 RNKDGEKLHPTQK---------PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           RN+   +  PTQ          PEAL+   +++ ++PGD++ DPFFGSGT+G VA++L R
Sbjct: 275 RNRRSVRTIPTQSFDGAHFATFPEALVEPCVLAGSRPGDVVFDPFFGSGTTGQVAQRLGR 334

Query: 247 SFIGIEMKQDYIDIATKRI 265
            F+G E+  DY  +   R+
Sbjct: 335 RFLGCELNPDYEPLQRDRL 353



 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
           +R+   LQ+  +++  DI+W K NPMP     R   AHE L   S   K++ Y +++ A+
Sbjct: 122 WRLAFALQDAGWYLRQDIIWHKPNPMPESVRDRCTKAHEYLFLLS---KSERYYYDFHAM 178

Query: 172 K 172
           +
Sbjct: 179 Q 179


>gi|237755754|ref|ZP_04584359.1| DNA methylase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692089|gb|EEP61092.1| DNA methylase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 325

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 123/293 (41%), Gaps = 69/293 (23%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
           S+KN   +N  Q +  +W +KI   +S ++ + +P  S+ L F  PPYN   NG+ Y  D
Sbjct: 70  SEKNVNNLNNFQQNTMDWMNKIYCQSSENMFQ-IPDGSIALAFTSPPYN---NGKEY--D 123

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG----------SYHNI 111
            +L              E +            RVLK  G  +VI             H++
Sbjct: 124 KNLNLKEYLLLLARVGKEVF------------RVLKKGGR-YVINIANLGRKPYIPLHSL 170

Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMP---------NFRGRRFQNAHETLI------WAS 156
             I  +   + F    +I+W+K              + +  R ++ HE L+      ++ 
Sbjct: 171 LYI--IHAEIGFRPAGEIIWQKGKGASGNCAWGSWLSAKSPRIRDIHEYLLIFVKDDFSR 228

Query: 157 P----SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
           P    S  +K    NY             S W +P  S       K G   HP   P  L
Sbjct: 229 PDKGVSTISKEEFLNYTI-----------SIWEVPPASAK-----KIG---HPAPFPIEL 269

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
            SR++   +   D+ILDPF GSGT+   AKKL+R+F+G ++ ++Y  IA KR+
Sbjct: 270 ASRVIKLFSYENDVILDPFVGSGTTCVAAKKLKRNFVGYDINEEYCKIALKRL 322


>gi|313892468|ref|ZP_07826058.1| DNA (cytosine-5-)-methyltransferase [Dialister microaerophilus UPII
           345-E]
 gi|313119150|gb|EFR42352.1| DNA (cytosine-5-)-methyltransferase [Dialister microaerophilus UPII
           345-E]
          Length = 251

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 116/278 (41%), Gaps = 52/278 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS---WDKFSSF 78
           KI +G+ + +++ +   S+D+I  DPP         Y    ++ D   D    W++++  
Sbjct: 3   KIYRGDCLELMKNIKDNSIDMILCDPP---------YGTTSAVWDKALDCNLLWEQYN-- 51

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
                          R++K NG + +       F    +  N  ++   + +W+K+  + 
Sbjct: 52  ---------------RIIKQNGAIVLFSQLP--FSCDLITTNRKYFRY-EWIWQKNMAVG 93

Query: 139 NFRGRRFQ-NAHETLI-----WASPSPKAKGYTFNYDALKA----ANEDVQMRS--DWLI 186
            F  ++     HE ++       + +P+ K     Y         +   V  RS  D ++
Sbjct: 94  FFNAKKMPLRQHENILVFYKRLPTYNPQMKQGCKPYKKRDIGRIYSTSQVYGRSQKDRIM 153

Query: 187 PICSGSER--------LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
                  +        LR K     H TQKP  LL  ++ + T   + +LD   GSG++G
Sbjct: 154 KFQQRENKGVRYPTDVLRFKSARHKHATQKPIDLLMYLIKTYTNENETVLDNCMGSGSTG 213

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
              K L R FIG+E++QD+ ++A  RI S +  G + L
Sbjct: 214 VACKMLNRKFIGMELRQDFFNVAVDRILSCKSQGELFL 251


>gi|85715691|ref|ZP_01046670.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
           Nb-311A]
 gi|85697344|gb|EAQ35223.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
           Nb-311A]
          Length = 443

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 97/241 (40%), Gaps = 16/241 (6%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQ---LYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           N    +  L  K  DL+  DPPYN+ + G    L +  H+     +       S   +  
Sbjct: 179 NEADYVRVLAGKPADLVLTDPPYNVPIKGHVCGLGKIQHAEFAMASGEM----SESEFKR 234

Query: 84  FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
           F   +L   +   K    L+V   + ++F +    +  N  + N IVW K N      G 
Sbjct: 235 FLATFLAHAKAHSKAAAILFVFMDWRHLFELTVAGRENNLELKNLIVWAKDNAG---MGS 291

Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
            +++ HE          +   TF          +V     W     +     R+ D   +
Sbjct: 292 FYRSKHELCFVFKNGEGSHVNTFELGQHGRYRTNV-----WEYAGVNTFRAGRSGD-LAM 345

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPT KP A+++  +   TK G ++LDPF GSGT+   A+K  R+   IE    + D+  +
Sbjct: 346 HPTVKPTAMIADAIRDVTKRGAVVLDPFAGSGTTLIAAEKTGRAACAIEYDPRFCDVIIR 405

Query: 264 R 264
           R
Sbjct: 406 R 406


>gi|254510906|ref|ZP_05122973.1| DNA methylase [Rhodobacteraceae bacterium KLH11]
 gi|221534617|gb|EEE37605.1| DNA methylase [Rhodobacteraceae bacterium KLH11]
          Length = 261

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 101/251 (40%), Gaps = 35/251 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN------GQLYRPDHSLVDAVTDSWDKF 75
           ++I G+++ V+ +L A  VD + +DPPY   L+       + +R D     A     D  
Sbjct: 18  RLILGDAMQVMPELGA--VDHLISDPPYEQSLHDAKNSAARRHRTDGR---AELSGLDFA 72

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
              E  D FT      C      NG   V  +   + +   ++           +W K +
Sbjct: 73  GIDEIRDEFTELSSAIC------NGWFVVFCTIEGVAKWADVINPSEMKYKRGCIWIKPD 126

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
             P   G+             P+  A+ +   +     A  + + +      + +  +R 
Sbjct: 127 STPQLNGQ------------GPAQGAECFVTAWSGSGYARWNARGKRGVYTHLTNPPDR- 173

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                   HPT+KP  L+  +++  T PG +ILDPF GSGT+   A    R  IG+E+  
Sbjct: 174 -----HGGHPTEKPWRLMKEMILDFTNPGQLILDPFMGSGTTLVAAALTGRRAIGVELNP 228

Query: 256 DYIDIATKRIA 266
            Y D+A  R+A
Sbjct: 229 KYFDMACLRVA 239


>gi|315586028|gb|ADU40409.1| site-specific DNA-methyltransferase (cytosine-N(4)-specific)
           [Helicobacter pylori 35A]
          Length = 287

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 118/277 (42%), Gaps = 61/277 (22%)

Query: 39  SVDLIFADPPYNLQLNGQLYRPDHSL-VDAVTDSWDKFSSFEAYDAFTRAWL---LACRR 94
           SVDLI   PPY    N + Y  + +  +       +   + E Y+ +    L   L C R
Sbjct: 21  SVDLIITSPPY---FNIKDYTKNGTQDLQHSAQHVEDLGALEKYEDYLLGLLKVWLECYR 77

Query: 95  VLKPNGTLW-----------VIGSYHN--IFRIG-----TMLQNLN--------FWILND 128
            LKPNG L            V+ +++N  IF +      ++L +LN         ++L+ 
Sbjct: 78  ALKPNGKLCINVPLMPMLKKVLNTHYNRHIFDLHADIQHSILYDLNNTLENKPKMFLLDV 137

Query: 129 IVWRKSNP--------MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
            +W+++NP         P  R    QN  E +       K K  T      K   E  Q+
Sbjct: 138 YIWKRTNPTKRLMFGSYPYPRNFYAQNTIEFIGVFVKDGKPKQPT------KEQKEQSQL 191

Query: 181 RSD---------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
             +         W IPI + ++    K     H    P  L  R++   +  GD++LDPF
Sbjct: 192 TQEEWVEFTKQIWEIPIPNKNDIAFGK-----HAALMPAELARRLIRLYSCVGDVVLDPF 246

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            GSGT+   AK L+R+FIG E+ ++Y  +  +++ ++
Sbjct: 247 SGSGTTLREAKLLKRNFIGYELYENYKPLIEQKLGNL 283


>gi|124269005|ref|YP_001023009.1| DNA modification methylase-like protein [Methylibium petroleiphilum
           PM1]
 gi|124261780|gb|ABM96774.1| DNA modification methylase-like protein [Methylibium petroleiphilum
           PM1]
          Length = 227

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 48/75 (64%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L + DG   +PTQKPEALL RI+ + T  GD++ D F GSGT+ AVA+KL R +I  ++ 
Sbjct: 124 LLSNDGSIGYPTQKPEALLERIVKACTNEGDLVADFFVGSGTTAAVAEKLGRKWIATDLG 183

Query: 255 QDYIDIATKRIASVQ 269
           +  +    KR+  VQ
Sbjct: 184 KFGVHTTRKRLIGVQ 198


>gi|86160046|ref|YP_466831.1| DNA methylase N-4/N-6 [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776557|gb|ABC83394.1| DNA methylase N-4/N-6 [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 599

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 53/82 (64%), Gaps = 1/82 (1%)

Query: 197 NKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  E+L +PTQKP ALL RI+ +S+ PGD++LDPF G GT+   A++L R +IGI++  
Sbjct: 303 SQAAERLGYPTQKPLALLERIIATSSCPGDVVLDPFCGCGTAVEAAQRLGREWIGIDVTY 362

Query: 256 DYIDIATKRIASVQPLGNIELT 277
             I +   R+AS  P    EL 
Sbjct: 363 LAIRVIRDRLASGFPGIQYELA 384


>gi|220918853|ref|YP_002494157.1| DNA methylase N-4/N-6 domain protein [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219956707|gb|ACL67091.1| DNA methylase N-4/N-6 domain protein [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 599

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 53/82 (64%), Gaps = 1/82 (1%)

Query: 197 NKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  E+L +PTQKP ALL RI+ +S+ PGD++LDPF G GT+   A++L R +IGI++  
Sbjct: 303 SQAAERLGYPTQKPLALLERIIATSSCPGDVVLDPFCGCGTAVEAAQRLGREWIGIDVTY 362

Query: 256 DYIDIATKRIASVQPLGNIELT 277
             I +   R+AS  P    EL 
Sbjct: 363 LAIRVIRDRLASGFPGIQYELA 384


>gi|284053520|ref|ZP_06383730.1| DNA methylase N-4/N-6 domain protein [Arthrospira platensis str.
           Paraca]
 gi|78773884|gb|ABB51231.1| methyltransferase [Arthrospira platensis]
          Length = 375

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 127/344 (36%), Gaps = 114/344 (33%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           ++ G+ + V+++LP+ S D     PPY         G  + PD                F
Sbjct: 47  LLLGDVLEVMKELPSDSFDCCMTSPPYWGKREYDAGGIGWEPD----------------F 90

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWV-IGS--YHN-----IFRIGTMLQNLNFWIL-NDI 129
           + Y     +      RVLK  G+ W+ IG   YH       +RI   L +   WIL N +
Sbjct: 91  KTYVDNLCSVFSEVHRVLKKTGSFWLNIGDSYYHKNLLGLPWRIALNLTDNQGWILRNSV 150

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPK------------------------AKGYT 165
           +W K    P+    R +N HE L     SPK                        A G T
Sbjct: 151 IWNKVKGGPDHSKDRLRNIHENLFHFVKSPKYYYDIDSIRSSPRKTKVVNGSVVSATGVT 210

Query: 166 -FNY----------------DALKAANEDVQMRSDWLIP----ICSGSERLRNKDGEKL- 203
              Y                +A +A  E ++  SD +I     I  G +R  + D EK+ 
Sbjct: 211 GIRYKRKIELSTDLSENEKRNAYQALEEILRQVSDGIISDFRMIIRGQQRTTHSDSEKVS 270

Query: 204 ----------------HP---------------TQKPE-------ALLSRILVSST-KPG 224
                           HP               TQK E         L +I +SST  P 
Sbjct: 271 GRAKELKEKGFYFLKYHPKGSKPSDVWEILPEDTQKRELHFAPYPVDLCKIPISSTCPPN 330

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            II+DPF G+GT+  VA+ L R   GI++   Y++IA  R  ++
Sbjct: 331 GIIIDPFCGTGTTMLVAQLLGRKSCGIDISHHYLEIAKARSETI 374


>gi|332672826|gb|AEE69643.1| type III restriction enzyme M protein [Helicobacter pylori 83]
          Length = 299

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 46/70 (65%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+ L  T KPEALL RI+  ST+  D++LD F GSGT+  VA KL+R +IGIEM + + 
Sbjct: 116 EGQALFDTPKPEALLKRIIEISTQENDLVLDFFAGSGTTCTVAHKLKRKYIGIEMGEHFD 175

Query: 259 DIATKRIASV 268
            +   R+  V
Sbjct: 176 SMILPRLKKV 185


>gi|260580144|ref|ZP_05847974.1| twin-argninine leader-binding protein DmsD [Haemophilus influenzae
           RdAW]
 gi|260093428|gb|EEW77361.1| twin-argninine leader-binding protein DmsD [Haemophilus influenzae
           RdAW]
          Length = 763

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 46/63 (73%), Gaps = 2/63 (3%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRI 265
           +KPEALL RI+  +TK GDI+LD   GSGT+ AVA K+ R +IGIE + DYI+ +A +R+
Sbjct: 569 KKPEALLRRIIDMTTKEGDIVLDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIETLAVERL 627

Query: 266 ASV 268
             V
Sbjct: 628 KKV 630


>gi|291566458|dbj|BAI88730.1| methyltransferase [Arthrospira platensis NIES-39]
          Length = 382

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 127/344 (36%), Gaps = 114/344 (33%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           ++ G+ + V+++LP+ S D     PPY         G  + PD                F
Sbjct: 54  LLLGDVLEVMKELPSDSFDCCMTSPPYWGKREYDAGGIGWEPD----------------F 97

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWV-IGS--YHN-----IFRIGTMLQNLNFWIL-NDI 129
           + Y     +      RVLK  G+ W+ IG   YH       +RI   L +   WIL N +
Sbjct: 98  KTYVDNLCSVFSEVHRVLKKTGSFWLNIGDSYYHKNLLGLPWRIALNLTDNQGWILRNSV 157

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPK------------------------AKGYT 165
           +W K    P+    R +N HE L     SPK                        A G T
Sbjct: 158 IWNKVKGGPDHSKDRLRNIHENLFHFVKSPKYYYDIDSIRSSPRKTKVVNGSVVSATGVT 217

Query: 166 -FNY----------------DALKAANEDVQMRSDWLIP----ICSGSERLRNKDGEKL- 203
              Y                +A +A  E ++  SD +I     I  G +R  + D EK+ 
Sbjct: 218 GIRYKRKIELSTDLSENEKRNAYQALEEILRQVSDGIISDFRMIIRGQQRTTHSDSEKVS 277

Query: 204 ----------------HP---------------TQKPE-------ALLSRILVSST-KPG 224
                           HP               TQK E         L +I +SST  P 
Sbjct: 278 GRAKELKEKGFYFLKYHPKGSKPSDVWEILPEDTQKRELHFAPYPVDLCKIPISSTCPPN 337

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            II+DPF G+GT+  VA+ L R   GI++   Y++IA  R  ++
Sbjct: 338 GIIIDPFCGTGTTMLVAQLLGRKSCGIDISHHYLEIAKARSETI 381


>gi|229149253|ref|ZP_04277492.1| DNA methylase N-4/N-6 domain protein [Bacillus cereus m1550]
 gi|228634225|gb|EEK90815.1| DNA methylase N-4/N-6 domain protein [Bacillus cereus m1550]
          Length = 656

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 54/97 (55%), Gaps = 5/97 (5%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +PTQKP  LL RI+++S+KPGDI+ D F GSGT+   A  L R FIG ++    I   TK
Sbjct: 327 YPTQKPVKLLERIILASSKPGDIVFDCFMGSGTTQNAAMNLGRKFIGADINLGSIQTTTK 386

Query: 264 RIASVQPLGNIELTVLTGKRT-----EPRVAFNLLVE 295
           R+ +     +  L   TG+ T     E  V +N + E
Sbjct: 387 RLINEVRKIDALLKADTGQMTFKNEFEDEVTYNSISE 423


>gi|317182610|dbj|BAJ60394.1| putative type III restriction enzyme M protein [Helicobacter pylori
           F57]
          Length = 611

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 43/59 (72%), Gaps = 1/59 (1%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           T KPEAL+SRIL  ST   D++LD F GSGT+ AVA K++R +IGIE + DYI+  TK 
Sbjct: 429 TPKPEALISRILEVSTNENDLVLDFFAGSGTTCAVAHKMKRRYIGIE-QMDYIETITKE 486


>gi|16272988|ref|NP_439215.1| type III restriction-modification system methyltransferase-like
           protein [Haemophilus influenzae Rd KW20]
 gi|12230654|sp|P71366|T3MH_HAEIN RecName: Full=Putative type III restriction-modification system
           HindVIP enzyme mod; Short=M.HindVIP; AltName:
           Full=HindVIP methyltransferase
 gi|1574609|gb|AAC22721.1| predicted coding region HI1056 [Haemophilus influenzae Rd KW20]
          Length = 629

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 46/63 (73%), Gaps = 2/63 (3%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRI 265
           +KPEALL RI+  +TK GDI+LD   GSGT+ AVA K+ R +IGIE + DYI+ +A +R+
Sbjct: 435 KKPEALLRRIIDMTTKEGDIVLDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIETLAVERL 493

Query: 266 ASV 268
             V
Sbjct: 494 KKV 496


>gi|317011696|gb|ADU85443.1| putative type III restriction enzyme M protein [Helicobacter pylori
           SouthAfrica7]
          Length = 622

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 50/74 (67%), Gaps = 1/74 (1%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           G+E ++     ++    KPEAL+SRIL  +T+  D+ILD F GSGT+ AVA K++R +IG
Sbjct: 425 GTEEVKQIFKTQIFDFPKPEALISRILEIATQENDLILDFFAGSGTTCAVAHKMKRRYIG 484

Query: 251 IEMKQDYIDIATKR 264
           IE + DYI+  TK 
Sbjct: 485 IE-QMDYIETITKE 497


>gi|229551578|ref|ZP_04440303.1| probable site-specific DNA-methyltransferase [Lactobacillus
           rhamnosus LMS2-1]
 gi|229315043|gb|EEN81016.1| probable site-specific DNA-methyltransferase [Lactobacillus
           rhamnosus LMS2-1]
          Length = 244

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 102/261 (39%), Gaps = 55/261 (21%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           +  LP  S+D+I  D PY    N                +WDK   FE            
Sbjct: 1   MADLPTASIDMILCDLPYGTTAN----------------AWDKVIPFEYLWG-------Q 37

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF---RGRRFQNA 148
             R++KP GT+ +  +    F    +  N   +     VW K N + NF   + R     
Sbjct: 38  YERLIKPQGTIVLTAT--ERFSADLVQSNPALYRYK-WVWIK-NTVTNFVNAKNRPLSRF 93

Query: 149 HETLIWASP-------SPKAKGYTFNYDALKAANEDVQMRS--------DWLIPICSGSE 193
            E L+++         SP  KG  +    L   N+ V  R          W  P  S ++
Sbjct: 94  EEILVFSKSGTANFGNSPDTKGMNYFPQGLLPYNKTVNSRKYERANQLHPWNAP-DSYTQ 152

Query: 194 RLRNKDGEKL---------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
              N   + L         HPTQKP  L + ++ + T+PG+I+LD   GSGT+   A   
Sbjct: 153 EWTNYPADVLSYKSERTGWHPTQKPVDLFAYLIKTYTQPGEIVLDNCMGSGTTAIAAMDT 212

Query: 245 RRSFIGIEMKQDYIDIATKRI 265
            R FIG E+ ++Y   A  RI
Sbjct: 213 NRHFIGYELSEEYWRRANDRI 233


>gi|89076177|ref|ZP_01162534.1| haemagglutinin associated protein [Photobacterium sp. SKA34]
 gi|89048127|gb|EAR53712.1| haemagglutinin associated protein [Photobacterium sp. SKA34]
          Length = 219

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 103/259 (39%), Gaps = 55/259 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I + ++I  L  LP +S+DL+  DPPY      +      S+         K SS + +
Sbjct: 2   QIFQKDAIEWLTALPDQSIDLMITDPPY------ESLEKHRSVGRTTRLKQSKGSSNQWF 55

Query: 82  DAFT----RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           D F      + L    RVLK N   ++      +F I  + + + F     IVW K    
Sbjct: 56  DIFPNERFESLLTQAYRVLKQNSHFYLFCDQETMFHIKPIAEKVGFKFWKPIVWDKV--- 112

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                                  A G  ++Y A          R ++++    G  +L N
Sbjct: 113 -----------------------AIGMGYHYRA----------RYEFILFFEKGKRKLNN 139

Query: 198 ---------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
                    K   + +PT+KP  LL  ++  S+  GD++ DPFFGSG++   A KL R  
Sbjct: 140 LSIPDVLECKRVYRGYPTEKPVPLLEILIEQSSVEGDVVADPFFGSGSTLVAADKLSRQA 199

Query: 249 IGIEMKQDYIDIATKRIAS 267
            G ++         +R++S
Sbjct: 200 WGSDISDSAHQHLKQRLSS 218


>gi|332656326|ref|YP_004301628.1| methyltransferase [Tetragenococcus halophilus]
 gi|332656391|ref|YP_004306083.1| methyltransferase [Tetragenococcus halophilus]
 gi|326324639|dbj|BAJ84466.1| methyltransferase [Tetragenococcus halophilus]
 gi|326324669|dbj|BAJ84495.1| methyltransferase [Tetragenococcus halophilus]
          Length = 534

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 10/162 (6%)

Query: 109 HNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
           HNIFR   +   N+N +I  ++V  + N    +  R+  N+ E L++   S    GY+ +
Sbjct: 254 HNIFRYDKVTGFNINNFIEGEVVRVERNGREYYLERK-SNSIEQLMFLGASY---GYSND 309

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
           + +        ++R DW          +  +   KL   +KPE L+  +++S TK  +I+
Sbjct: 310 FFSTYGFR---KIRGDWWSGYYLDMGNVNKEGNVKLSSGKKPERLIYDLIISLTKKEEIV 366

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI-DIATKRIASV 268
           LD F GSGTS A A K +R FIG+E + DYI D+A +R  +V
Sbjct: 367 LDFFMGSGTSIAAALKTQRQFIGLE-QLDYIEDLAIERFKNV 407


>gi|317014777|gb|ADU82213.1| adenine-specific DNA-methyltransferase [Helicobacter pylori
           Gambia94/24]
          Length = 655

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 44/62 (70%), Gaps = 1/62 (1%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           L   +KPEALL RIL  ST+  D++LD F GSGT+ AVA K++R +IGIE + DYI+  T
Sbjct: 470 LKNGKKPEALLQRILEISTQENDLVLDFFAGSGTTCAVAHKMKRRYIGIE-QMDYIETIT 528

Query: 263 KR 264
           K 
Sbjct: 529 KE 530


>gi|220905504|ref|YP_002480816.1| DNA methylase N-4/N-6 domain-containing protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869803|gb|ACL50138.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 285

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 115/262 (43%), Gaps = 59/262 (22%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +++G+ I++L+ + + SVD  FADPP+NL     +   D        + +DK      Y 
Sbjct: 28  MLEGDCINILKNIKSNSVDTFFADPPFNLNKKYGVKSND--------NKYDK-----EYI 74

Query: 83  AFTRAWLLACRRVLKPNGTLWV---------IGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
            +  +W+    R+LKP G  ++         +GSY  +   G + ++   WI   +  + 
Sbjct: 75  EWCYSWISEGIRILKPGGAFFIYNLPKWNMILGSY--LTSAGLLFRH---WIA--VSMKL 127

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
           S P+P    +R   AH +L++ +     KG    ++ ++   E +       I    G  
Sbjct: 128 SLPIP----KRLYPAHYSLLYFT-----KGAPKTFNKIRTPIE-LCRHCGKEIKDYGGHR 177

Query: 194 RLRNKDGEKLHPT--------------------QKPEALLSRILVSSTKPGDIILDPFFG 233
           +  N +G  L                       Q    LL RI++ +T  GDI++DPF G
Sbjct: 178 KSMNPNGVNLSDVWNDIAPVRHHKFKHNKRTENQLSTKLLERIILMTTNEGDIVVDPFGG 237

Query: 234 SGTSGAVAKKLRRSFIGIEMKQ 255
            GT+ AV +   R +IGIE++ 
Sbjct: 238 GGTTFAVCEAKLRRWIGIEIED 259


>gi|78221896|ref|YP_383643.1| DNA methylase N-4/N-6 [Geobacter metallireducens GS-15]
 gi|78193151|gb|ABB30918.1| DNA methylase N-4/N-6 [Geobacter metallireducens GS-15]
          Length = 520

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 42/63 (66%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T KPEALL RI+  +T PGD++LD F GSGT+ AVA K+ R +IGIEM +  +     R+
Sbjct: 315 TPKPEALLQRIIHIATNPGDLVLDSFLGSGTTAAVAHKMGRRWIGIEMGEHAVTHCLPRL 374

Query: 266 ASV 268
             V
Sbjct: 375 EKV 377


>gi|237750641|ref|ZP_04581121.1| LOW QUALITY PROTEIN: type IIS restriction enzyme M1 protein
           [Helicobacter bilis ATCC 43879]
 gi|229373731|gb|EEO24122.1| LOW QUALITY PROTEIN: type IIS restriction enzyme M1 protein
           [Helicobacter bilis ATCC 43879]
          Length = 156

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 55/86 (63%), Gaps = 1/86 (1%)

Query: 175 NEDVQMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
           NE+ ++  D W I      +++  K  +  HPT KP+ ++ R++ +S+K GD++LD F G
Sbjct: 63  NENGKLCPDVWEITSQRHKQKINGKTQKLHHPTIKPKEMIERMIKASSKKGDLVLDLFSG 122

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYID 259
           SGT+  VA++L R+FIG E   +Y+D
Sbjct: 123 SGTTSLVARELERNFIGCEASIEYVD 148


>gi|308183476|ref|YP_003927603.1| type IIS restriction enzyme M2 protein (mod) [Helicobacter pylori
           PeCan4]
 gi|308065661|gb|ADO07553.1| type IIS restriction enzyme M2 protein (mod) [Helicobacter pylori
           PeCan4]
          Length = 287

 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 119/282 (42%), Gaps = 71/282 (25%)

Query: 39  SVDLIFADPPYNLQLNGQLYRPD------HSLVDAVTDSWDKFSSFEAYDAFTRAWL--- 89
           SVDLI   PPY    N + Y  +      HS    V D W    + E Y+ +    L   
Sbjct: 21  SVDLIITSPPY---FNIKDYTKNGTQDLQHS-AQHVEDLW----ALEKYEDYLLGLLKVW 72

Query: 90  LACRRVLKPNGTLW-----------VIGSYHN--IFRIG-----TMLQNLN--------F 123
           L C R LKPNG L            V+ +++N  IF +      ++L +LN         
Sbjct: 73  LECYRALKPNGKLCINVPLMPMLKKVLNTHYNRHIFDLHADIQHSILHDLNNTLENKPKM 132

Query: 124 WILNDIVWRKSNP--------MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
           ++L+  +W+++NP         P  R    QN  E +       K K  T      K   
Sbjct: 133 FLLDVYIWKRANPTKGLMFGSYPYPRNFYAQNTIEFIGVFVKDGKPKQPT------KEQK 186

Query: 176 EDVQMRSD---------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
           E  Q+  +         W IPI + ++    K     H    P  L  R++   +  GD+
Sbjct: 187 EQSQLTQEEWVEFTKQIWEIPIPNKNDIAFGK-----HAALMPAELARRLIRLYSCVGDV 241

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +LDPF G GT+   AK L+R+FIG E+ ++Y  +  +++ ++
Sbjct: 242 VLDPFSGIGTTLREAKFLKRNFIGYELYENYKPLIEQKLGNL 283


>gi|283852819|ref|ZP_06370082.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio sp. FW1012B]
 gi|283571811|gb|EFC19808.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio sp. FW1012B]
          Length = 320

 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 119/288 (41%), Gaps = 62/288 (21%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH----------SLVDAVTD 70
           +  + G+++ +L +LPA+SVDL F  PPY          PD           +++DA  D
Sbjct: 40  EGFVHGDALELLPRLPARSVDLFFMSPPYADARAYSRIHPDRYVEWFLPFARAMLDAAKD 99

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN-IFRIGTMLQNLNFWILNDI 129
           S     + +          +A R  LK        G  H  ++ +   LQ++ +  L   
Sbjct: 100 SGSMILNIKNR--------VANRGALK--------GQRHPYVYALVLALQHMGWRWLETY 143

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT--FNYDALKAA-----NEDVQMRS 182
           +W K N +P   G R +++ E +        AKG    F+ DA++        E  + + 
Sbjct: 144 IWAKPNAVPGRFGPRTKDSFEYVYHF-----AKGVRPHFDLDAVRVPYKADPAEIARRKR 198

Query: 183 DWL----IPICSGSERLR-------------------NKDGEKLHPTQKPEALLSRILVS 219
           D L         G +R +                   N+     H    PE L    +  
Sbjct: 199 DTLGRRNTMAGFGRDRTKTYLLGGADPGNVVSVPQTYNQHRGVAHTAAMPEGLAEFFIRV 258

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           ++  G +++DPF GSGT+  VA++L R   G E+ ++Y+  A +R+A+
Sbjct: 259 ASPAGGVVIDPFAGSGTTVVVARRLGRLAGGFELHEEYVAEAKRRLAA 306


>gi|323699610|ref|ZP_08111522.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio sp. ND132]
 gi|323459542|gb|EGB15407.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio desulfuricans
           ND132]
          Length = 242

 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 97/236 (41%), Gaps = 37/236 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I   ++   LE  P+   + I  DPP+ + + G+ +       D +           AY 
Sbjct: 21  IHNDDAFLFLENCPSHRYEAIITDPPFEIGIAGKDWDCKKLRTDVL-----------AYQ 69

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPNF 140
            +         RVLKP G ++V  S    F+ G   + L+  F  L    W K +     
Sbjct: 70  FY---------RVLKPGGNVFVFCS---DFQFGDWYRELSRYFTKLRKYAWCKPDSRSTN 117

Query: 141 RGRRFQNAHETLIWASPSPK---AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           +G  FQ + E  +           +G   NY      + + +M  D         E    
Sbjct: 118 KGM-FQESFELGLHVCSENSYFDKEGRYKNYVVAGKTSGNERMMPD-------PDEEWST 169

Query: 198 KDGEK-LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           K GEK LHPTQK  +++  ++ + +K GD I DPF G+GT G  AK L R F  +E
Sbjct: 170 KKGEKTLHPTQKKLSVIETLVTALSKEGDTIFDPFAGTGTLGVAAKNLGRKFEMVE 225


>gi|309806637|ref|ZP_07700633.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
           03V1-b]
 gi|308166942|gb|EFO69125.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
           03V1-b]
          Length = 576

 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 128/290 (44%), Gaps = 71/290 (24%)

Query: 23  IIKGNSI----SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           IIKGN++    S+L++   K V  I+ DPPYN +                 DS++   SF
Sbjct: 191 IIKGNNLIALASLLKRYEGK-VKCIYIDPPYNTK----------------NDSFNYNDSF 233

Query: 79  --EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL----NF-----WILN 127
               +  F +  L   R++L+ +GT++V    +    +  ++ ++    NF     W+L 
Sbjct: 234 NHSTWLTFMKNRLELARKLLREDGTIFVQCDDNEQAYLKVLMDSIFGRNNFQAEIVWVLE 293

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ-------- 179
                KS      RG      HE++++ S   K+  + FN   L  + + ++        
Sbjct: 294 GASGYKSLVNNYVRG------HESILFYS---KSNYFNFNKIYLPYSEKQIKRFSKLDDS 344

Query: 180 ---------MRSDWL-----IPIC------SGSERLRNKDGEKLHPTQKPEALLSRILVS 219
                     R  +L     +P+       +  + + N        TQKPE L+ RI+ +
Sbjct: 345 GRRYKPITKTRRLYLDEAKGVPLTDVWTDIASFQTIVNSPERTGFDTQKPEKLIERIIET 404

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI-DIATKRIASV 268
            T   D++LD   GSGT+ AVA K+ R +IG+E + DYI DI  +R+  V
Sbjct: 405 LTTTHDLVLDFHLGSGTTAAVAHKMGRRYIGVE-QMDYIQDITVERLKKV 453


>gi|322379738|ref|ZP_08054049.1| DNA methylase [Helicobacter suis HS5]
 gi|321147836|gb|EFX42425.1| DNA methylase [Helicobacter suis HS5]
          Length = 272

 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 117/265 (44%), Gaps = 53/265 (20%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW-DKFSSFEAYDAFTRAWL- 89
           ++++P +SV LI   PPY    N + Y  + +     ++S      + + Y+ + +  L 
Sbjct: 13  MDEVPDQSVALIITSPPY---FNIKDYSKNGTQSSKHSESHAGDLGNIDHYETYIKEMLQ 69

Query: 90  --LACRRVLKPNGTLW-----------VIGSYHN--IFRI-----GTMLQNLNFWILNDI 129
             L C+RVL+PNG L            V  +++N  IF +      ++L++   ++L+  
Sbjct: 70  VWLECQRVLEPNGKLCINVPMLPMLKSVYNTHYNRHIFDLKSDIEHSILKSTKLYLLDLY 129

Query: 130 VWRKSN----------PMP-NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
           +W ++N          P P NF     QN  E +I      K K  +      K A+   
Sbjct: 130 IWNRTNTTKKLMFGSYPHPTNFYA---QNTSEFIIVFVKDGKPKKVS---QERKEASRLT 183

Query: 179 QM------RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
           Q       +  W IPI + S+      GE  H    PE L  R+    +   D++LDPF 
Sbjct: 184 QQEWVEFTKQIWDIPIPNKSDLAF---GE--HAAIMPELLAYRLTKMFSFVQDVVLDPFV 238

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDY 257
           GSGT+  VAK L R +IG E+   Y
Sbjct: 239 GSGTTLKVAKALDRQYIGYEIYPHY 263


>gi|320536135|ref|ZP_08036188.1| DNA (cytosine-5-)-methyltransferase [Treponema phagedenis F0421]
 gi|320147052|gb|EFW38615.1| DNA (cytosine-5-)-methyltransferase [Treponema phagedenis F0421]
          Length = 299

 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 48/72 (66%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           R+   +K+HP   P A+  R++   T  G+++LDPF GSGT+   A+ L R+ IG ++KQ
Sbjct: 45  RDIRDKKIHPAVFPIAMAKRVIEQFTHRGELVLDPFVGSGTTLLAAQDLNRNAIGFDLKQ 104

Query: 256 DYIDIATKRIAS 267
           +Y+D++  RIA+
Sbjct: 105 EYVDLSNSRIAA 116


>gi|309805410|ref|ZP_07699457.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
           09V1-c]
 gi|308165228|gb|EFO67464.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
           09V1-c]
          Length = 576

 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 128/290 (44%), Gaps = 71/290 (24%)

Query: 23  IIKGNSI----SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           IIKGN++    S+L++   K V  I+ DPPYN +                 DS++   SF
Sbjct: 191 IIKGNNLIALASLLKRYEGK-VKCIYIDPPYNTK----------------NDSFNYNDSF 233

Query: 79  --EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL----NF-----WILN 127
               +  F +  L   R++L+ +GT++V    +    +  ++ ++    NF     W+L 
Sbjct: 234 NHSTWLTFMKNRLELARKLLREDGTIFVQCDDNEQAYLKVLMDSIFGRNNFQAEIVWVLE 293

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ-------- 179
                KS      RG      HE++++ S   K+  + FN   L  + + ++        
Sbjct: 294 GASGYKSLVNNYVRG------HESILFYS---KSNYFNFNKIYLPYSEKQIKRFSKLDDS 344

Query: 180 ---------MRSDWL-----IPIC------SGSERLRNKDGEKLHPTQKPEALLSRILVS 219
                     R  +L     +P+       +  + + N        TQKPE L+ RI+ +
Sbjct: 345 GRRYKPITKTRRLYLDEAKGVPLTDVWTDIASFQTIVNSPERTGFDTQKPEKLIERIIET 404

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI-DIATKRIASV 268
            T   D++LD   GSGT+ AVA K+ R +IG+E + DYI DI  +R+  V
Sbjct: 405 LTTTHDLVLDFHLGSGTTAAVAHKMGRRYIGVE-QMDYIQDITVERLKKV 453


>gi|209550029|ref|YP_002281946.1| DNA methylase N-4/N-6 [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535785|gb|ACI55720.1| DNA methylase N-4/N-6 domain protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 379

 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 110/287 (38%), Gaps = 70/287 (24%)

Query: 39  SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRV-LK 97
           S D  F D P++    G +Y P HS    +  S D+ S  E+         +  + V + 
Sbjct: 107 SDDRTFRDKPFSTV--GPVYDPKHSKARGLFVSGDRQSHVESGGRVVAGGYMKPKDVCMI 164

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
           PN             R+   LQ+  +W+ ++I+W K+NP P     R    HE  IW   
Sbjct: 165 PN-------------RLAIALQDDGWWVRSEIIWNKTNPKPESIDDRPAAVHEK-IWL-- 208

Query: 158 SPKAKGYTFNYDALK--AANEDVQMRSDWLIPICSGSERLRNKDG--------------- 200
             K++ Y F+ D+LK          R D       GS   +N++G               
Sbjct: 209 LTKSERYFFDADSLKEPTTGNAHARRKDGQYKAAKGSTAGQNREGTWVETYVPDLRNGRN 268

Query: 201 ---------EKLHPTQKPEALLSRILVSSTK-----------------------PGDIIL 228
                       H    P  L  R +++ T                        PG I+L
Sbjct: 269 VWTFNIEGYRGAHFATFPRELARRCILAGTPKTVCGCCGAAEGCGPICDTFERLPG-IVL 327

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           DPF GSGT   VA++       IE+K +Y DIA +RIA   P+ +IE
Sbjct: 328 DPFGGSGTVAVVAEQYSYRSALIELKPEYADIAERRIAGA-PVVSIE 373


>gi|330448524|ref|ZP_08312172.1| DNA methylase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492715|dbj|GAA06669.1| DNA methylase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 217

 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 105/257 (40%), Gaps = 55/257 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY-NLQLN---GQLYRPDHSLVDAVTDSWDKFSS 77
           ++ + +++  L  LP +S+DL+  DPPY +L+ +   G   R   S     ++ W     
Sbjct: 2   QLFQQDAVEWLSSLPDQSIDLLITDPPYESLEKHRAVGTTTRLKQS--KGSSNQWFNIFP 59

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E +D      L    RVLK N   ++      +F I  + + + F     IVW K    
Sbjct: 60  NERFDTL----LTQAYRVLKQNSHFYLFCDQETMFHIKPIAEQVGFKFWKPIVWDKV--- 112

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                                  A G  ++Y A          R ++++    G  +L N
Sbjct: 113 -----------------------AIGMGYHYRA----------RYEFILFFEKGKRKLNN 139

Query: 198 ---------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
                    K   + +PT+KP  LL  ++  S+  G+++ DPFFGSG++   A+KL R  
Sbjct: 140 LSIPDVLECKRVYRGYPTEKPVPLLEILIEQSSVEGEVVADPFFGSGSTLVAAQKLSRQA 199

Query: 249 IGIEMKQDYIDIATKRI 265
            G ++        T+RI
Sbjct: 200 WGNDISDSAHQHLTQRI 216


>gi|61805940|ref|YP_214300.1| putative N6A methyltransferase [Prochlorococcus phage P-SSM2]
 gi|61374449|gb|AAX44446.1| putative N6A methyltransferase [Prochlorococcus phage P-SSM2]
 gi|265525147|gb|ACY75944.1| conserved hypothetical protein [Prochlorococcus phage P-SSM2]
          Length = 306

 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 118/319 (36%), Gaps = 91/319 (28%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS-----------SFEA 80
           + ++  KSVDL+  DPPYN+                  D WD F            S  +
Sbjct: 1   MREVEDKSVDLVLIDPPYNI----------------AKDDWDNFGVTKKGYQPKEYSGVS 44

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI----------GTMLQNLNFWILNDIV 130
           Y  + +   +   RVLK +G+ W    +HN FR+           T L+  NF + N + 
Sbjct: 45  YYEWMQEVFIEIDRVLKDSGSFWF---FHNDFRMMAELDRRITDNTNLEYRNFIVWNKLF 101

Query: 131 ------------------------------WRKSNPMPNFRGRRFQ-------NAHETLI 153
                                         + K N     R RR +        + E L 
Sbjct: 102 SGCKQEGFLNGFVQVEGLNNFQKMAEYILFYTKKNLHLKLRERRLELGVKSSDISKEILS 161

Query: 154 -------WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR-----NKDGE 201
                  W S     K Y    + +K   + +    D L+P              + D +
Sbjct: 162 KTGNVTGWYSNIETGKNYP-TKETIKPITKHLGFTLDDLVPKFYNQRTHHSVWQYDFDSK 220

Query: 202 KL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           K+ H T KP  LL  +++  T  GD +LD F GSG++     +  R +I IE ++ Y++I
Sbjct: 221 KMGHLTPKPIELLKNVILHCTDEGDTVLDCFGGSGSTAVACIETNRDYILIEREEKYVNI 280

Query: 261 ATKRIASVQPLGNIELTVL 279
           + +RI +  P+  +  T L
Sbjct: 281 SKERIQNAVPVEEVAHTQL 299


>gi|153824598|ref|ZP_01977265.1| DNA methylase [Vibrio cholerae MZO-2]
 gi|149741816|gb|EDM55845.1| DNA methylase [Vibrio cholerae MZO-2]
          Length = 218

 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 99/233 (42%), Gaps = 39/233 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSFEAY 81
           + + ++++ L  L A SVDL+  DPPY            H  +   T     K SS + +
Sbjct: 3   LFQDDAVTWLSTLDAASVDLLITDPPYE-------SLEKHRKIGTTTRLKVSKASSNQWF 55

Query: 82  DAFT----RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           D F      A L    RVLK +   ++      +F I  + + + F     IVW K +  
Sbjct: 56  DIFPNDRFEALLCEVYRVLKNHSHFYLFCDQETMFVIKPIAEKIGFKFWKPIVWDKVSIG 115

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
             +                       Y   Y+ +    +  +  +D  IP     + L +
Sbjct: 116 MGYH----------------------YRARYEYILFFEKGKRKLNDLSIP-----DILTH 148

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           K   + +PT+KP +LL  ++  S++ G++++DPFFGSG++   A  L+R F G
Sbjct: 149 KRVYRGYPTEKPVSLLEVLVAQSSREGELVVDPFFGSGSTLVAANNLKRQFKG 201


>gi|60418614|gb|AAX19734.1| Csp231I DNA methyltransferase [Citrobacter sp. RFL231]
          Length = 301

 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 114/294 (38%), Gaps = 52/294 (17%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN-----------------------GQ 56
           K  +I  +SIS L+KL   S+DLI +D PY +  +                       G 
Sbjct: 3   KQLLINADSISELKKLEDNSIDLILSDIPYGIGADDWDVLHKNTNTAYLGNSPAQKQAGN 62

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
           +++     ++  +D+  K  +   Y  + + W     RVLKP GT +V        R   
Sbjct: 63  VFKRRGKPINGWSDADKKIPA--EYYQWCQTWASEWLRVLKPGGTAFVFAGRRFAPRCIV 120

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN--------- 167
            L++  F   + + W K  P    R +R    +E       S K  G+            
Sbjct: 121 ALEDAGFNFRDMLSWIK--PKATHRAQRLSIVYERRGMQDESLKWNGWRIGNLRPIFEPI 178

Query: 168 ------YDALKAAN---EDVQMRSDWLIPICSGSER------LRNKDGEKLHPTQKPEAL 212
                 Y    A N    ++   + +     +G         +  K+G  LH  QKP  L
Sbjct: 179 IWCFKPYKHTIADNVLEHNLGAYNQFAFEEITGHFNNTLEIGMSPKEG-GLHDAQKPVKL 237

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           L  ++   T PG ++LDPF GSG++   A  L+R FI IE   +   I   R++
Sbjct: 238 LETLISLVTIPGQVVLDPFAGSGSTAIAALNLKRDFIMIEKDPNIFSIMNDRLS 291


>gi|118576081|ref|YP_875824.1| DNA modification methylase [Cenarchaeum symbiosum A]
 gi|118194602|gb|ABK77520.1| DNA modification methylase [Cenarchaeum symbiosum A]
          Length = 320

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 128/295 (43%), Gaps = 45/295 (15%)

Query: 7   LAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDH 62
           ++I++++  I    D++   +S  ++ ++P  S++ +   PPY    +  L+G   R  H
Sbjct: 31  MSISKSRARIRLDTDRVYYKDS-RMMTEIPDNSINCVITSPPYFSINDYSLDG-YQRKRH 88

Query: 63  SLVDAVTDSWDKFSSFEAY-DAFTRAWLLACRRVLKPNGTLWV----------IGSYH-- 109
           S   A          FE Y     + W   C RVL+PNG L +          + + H  
Sbjct: 89  SGNKAA--QLGNIKKFETYIGELLKVWS-ECERVLRPNGKLIINAPLMPMLKRVYNTHFN 145

Query: 110 -NIFRIGTMLQ-----NLNFWILNDIVWRKSNP--MPNFRGRRFQN---AHETLIWASPS 158
            +IF I + +Q     +   ++L+  +W ++NP   P F    + +   A  T+ + +  
Sbjct: 146 RHIFNIHSEIQRSILDDTGLFLLDVYIWNRTNPSKKPMFGSYPYPSNFYAQNTIEFIAVY 205

Query: 159 PKAKGYTFNYDALKAANEDVQMRS-------DWLIPICSGSERLRNKDGEKLHPTQKPEA 211
            K      N    +     +  +         W IP+ +  +    K     HP   PE 
Sbjct: 206 VKDGKSDNNISKTRKRRSRLTQKEWVEYTKQVWDIPMPNKGDSAFGK-----HPAIMPEE 260

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           +  R +   T  GD++LDPF GSGT+  +AKKL R +IG E+ + Y    T+++ 
Sbjct: 261 IPRRCIRLFTFEGDVVLDPFSGSGTTLKMAKKLNRKYIGYEIMKSYKGHITEKLG 315


>gi|172039381|ref|YP_001805882.1| putative DNA methylase N-4/N-6 [Cyanothece sp. ATCC 51142]
 gi|171700835|gb|ACB53816.1| putative DNA methylase N-4/N-6 [Cyanothece sp. ATCC 51142]
          Length = 295

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 44/69 (63%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           + ++ HPTQKP  L+ RI+ +S++   I+LDPF GSG++      L R +IGIE ++ YI
Sbjct: 224 EEKRFHPTQKPVKLMERIIRASSQENMIVLDPFMGSGSTAIACLNLNRHYIGIEKEKKYI 283

Query: 259 DIATKRIAS 267
           D    RI +
Sbjct: 284 DKINSRIEN 292



 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 24/141 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFE 79
           ++II+ +   +L++LP KSVDLI  DPPY                  +   WD ++ + E
Sbjct: 5   NQIIQRDCTEILQELPDKSVDLIILDPPY---------------WKVIQQKWDYQWRTEE 49

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y  +   WL    RV+K +G+L++ G   N+F +   + +L F     I+  K   M  
Sbjct: 50  DYKEWCLQWLSEISRVIKLSGSLYLFGYLRNLFYLYEPIIDLGFNFRQQIIIDKG--MKA 107

Query: 140 FRGR------RFQNAHETLIW 154
             GR       F N  E+L++
Sbjct: 108 ISGRATKNYKMFPNVTESLLF 128


>gi|71279759|ref|YP_267259.1| hemagglutinin associated protein [Colwellia psychrerythraea 34H]
 gi|71145499|gb|AAZ25972.1| haemagglutinin associated protein [Colwellia psychrerythraea 34H]
          Length = 230

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 112/252 (44%), Gaps = 39/252 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY-NLQLN---GQLYRPDHSLVDAVTDSWDKFSSF 78
           I + +++  L+ LP +S+DL+  DPPY +L+ +   G   R  HS   + +++W     F
Sbjct: 7   ISQSDAVDFLKSLPDESLDLVITDPPYESLEKHRKIGTTTRLKHS--KSSSNNW-----F 59

Query: 79  EAY-DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           E + ++      +   R LK N   +++      F +  + ++  F     IVW K   M
Sbjct: 60  EIFPNSRFEELFIEIYRTLKNNTHFYLLCDQETAFIVKPIAESCGFKFWKPIVWDK---M 116

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
               G  ++  +E +++           F     K  N          IP      R+  
Sbjct: 117 KIGMGYHYRARYEFILF-----------FEKGKRKLNN--------LAIPDVLQVPRVY- 156

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
               + +PT+KP AL+  ++  ST+ G +I DPF GSG+ G  A  L R F G ++  D 
Sbjct: 157 ----RGYPTEKPVALMDILIEQSTEKGFLICDPFMGSGSVGVSALSLSRKFYGNDLSIDS 212

Query: 258 IDIATKRIASVQ 269
           ++    RI +++
Sbjct: 213 LNHTIDRIKNIE 224


>gi|188990456|ref|YP_001902466.1| restriction-modification system DNA-methyltransferase [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167732216|emb|CAP50408.1| restriction-modification system DNA-methyltransferase [Xanthomonas
           campestris pv. campestris]
          Length = 505

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 31/48 (64%), Positives = 37/48 (77%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           T KPE LL RI+  +T PGDI+LD F GSGT+ AVA K+RR +IGIEM
Sbjct: 302 TPKPERLLKRIIEIATDPGDIVLDSFLGSGTTAAVAHKMRRRWIGIEM 349


>gi|76810832|ref|YP_333073.1| DNA methylase [Burkholderia pseudomallei 1710b]
 gi|254260324|ref|ZP_04951378.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei
           1710a]
 gi|76580285|gb|ABA49760.1| DNA methylase [Burkholderia pseudomallei 1710b]
 gi|254219013|gb|EET08397.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei
           1710a]
          Length = 378

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 55/101 (54%), Gaps = 13/101 (12%)

Query: 169 DALKAANEDV----QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
           ++  AA  DV      RS W IP  S        DG   H    PEAL+   +++ ++PG
Sbjct: 277 ESFSAAVTDVVTSRNRRSVWTIPTQS-------FDGA--HFATFPEALVEPCVLAGSRPG 327

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           D++ DPFFGSGT+G VA++L R FIG E+   Y  +   R+
Sbjct: 328 DVVFDPFFGSGTTGQVAQRLGRRFIGCELNPAYEPLQRDRL 368



 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
           +R+   LQ+  +++  DI+W K NPMP     R   AHE L   S   K++ Y +++ A+
Sbjct: 137 WRLAFALQDAGWYLRQDIIWHKPNPMPESVRDRCTKAHEYLFLLS---KSERYYYDFHAM 193

Query: 172 K 172
           +
Sbjct: 194 Q 194


>gi|291288949|ref|YP_003517452.1| adenine-specific methyltransferase [Klebsiella pneumoniae]
 gi|290792081|gb|ADD63407.1| adenine-specific methyltransferase [Klebsiella pneumoniae]
          Length = 176

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 43/70 (61%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G  LHPTQKP   L  ++ S + PG I+LDPF GSG++   A +  R +IGIEM   Y  
Sbjct: 90  GNTLHPTQKPVEALQPLIESFSAPGAIVLDPFAGSGSTCVAAYRAGRRYIGIEMLAQYHR 149

Query: 260 IATKRIASVQ 269
             T+R+A++ 
Sbjct: 150 AGTERLAAMH 159


>gi|300940961|ref|ZP_07155485.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 21-1]
 gi|284922568|emb|CBG35655.1| putative DNA methyltransferase [Escherichia coli 042]
 gi|300454285|gb|EFK17778.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 21-1]
          Length = 321

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 122/305 (40%), Gaps = 82/305 (26%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLN---GQLYRPDHSLVDAVTDSWDKFSSFE 79
           I   +S+ V++ +P  SV+L+F  PPY L      G + + D+                E
Sbjct: 35  IFHADSLDVMKSIPDNSVNLVFTSPPYALHFKKEYGNVCQKDY---------------VE 79

Query: 80  AYDAFTRAWLLACRRVLKPNGTL-------WVIGS-----YHNIFRIGTMLQNLNFWILN 127
            +  F +      +R+L  +G+        W  G      YH    I  +++ + F +  
Sbjct: 80  WFVDFAKE----IKRILTEDGSFVLNIGGSWNPGEPTRSIYHFKLVIA-LVEEVGFRLAQ 134

Query: 128 DIVWRKSNPMP------NFRGRRFQNAHETLIWAS--PSPKAKGYT----FNYDALKAA- 174
           +  W     MP        +  R +++ E + W S  P PKA        ++ D L+ A 
Sbjct: 135 ETFWYNPAKMPVPAQWVTVKRVRVKDSVEYVFWFSKGPHPKASNKKVLRPYSKDMLRLAA 194

Query: 175 --------------NE----------------DVQMRSDWLIPICSGSERLRNK----DG 200
                         NE                D +  SD L    + +  +  K    +G
Sbjct: 195 KGVKTTVRPSGHNINESFDKTHNGGSIPPNFIDDETPSDVLKMGNNAANDVYTKKCKANG 254

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K+HP + P  L    +   T  GD++LDPF GS T+GAVA+ L R +IGI+  ++Y+D 
Sbjct: 255 IKIHPARFPMQLPEFFIKMLTDEGDLVLDPFGGSMTAGAVAESLNRRWIGIDTVEEYLDG 314

Query: 261 ATKRI 265
           A  R 
Sbjct: 315 ALYRF 319


>gi|194015599|ref|ZP_03054215.1| DNA methylase N-4/N-6 [Bacillus pumilus ATCC 7061]
 gi|194013003|gb|EDW22569.1| DNA methylase N-4/N-6 [Bacillus pumilus ATCC 7061]
          Length = 425

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 103/242 (42%), Gaps = 27/242 (11%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYR-PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
           +     DL+  DPPYN+ +     +  D      + DS D       +D F R   L   
Sbjct: 190 MSGHKADLVITDPPYNVAVKSDSKKLNDDGHASILNDSMDDGQ----FDLFLREVFLNYS 245

Query: 94  RVLKPNGTLWVI--GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
           RV+     ++V    SY   F     +++ +  I +  +W K++P   F   +++  HE 
Sbjct: 246 RVMNEKAAIYVFHAASYQRAFE--NEMRHADIDIRSQCIWVKNSP--TFGWAQYKYMHEP 301

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL------RNKDGEKLHP 205
           + +A      KGY+ N+        D +  + W        E        R    + +HP
Sbjct: 302 VFYAF----KKGYSPNWYG------DRKQVTVWRADTSEEGEPATIWEVSRGDTTKYVHP 351

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           TQKP  L++  L +S+K GD ++D F GSG++    ++  R  + +E+   + D+  KR 
Sbjct: 352 TQKPLDLINIPLSNSSKKGDRVVDFFGGSGSTLMTCEQTDREALLLELDPYFCDVIKKRF 411

Query: 266 AS 267
             
Sbjct: 412 TE 413


>gi|281420518|ref|ZP_06251517.1| adenine specific DNA methylase Mod [Prevotella copri DSM 18205]
 gi|281405291|gb|EFB35971.1| adenine specific DNA methylase Mod [Prevotella copri DSM 18205]
          Length = 561

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 47/68 (69%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           EK+  T KPE L+ +IL  +T  GD++LD + GSGT+ AVA KL+R++IGIE+ +   ++
Sbjct: 285 EKVFDTPKPEELIRQILEIATNEGDLVLDSYLGSGTTLAVAHKLKRNYIGIEIGEQMTEL 344

Query: 261 ATKRIASV 268
              R+ SV
Sbjct: 345 VVNRLKSV 352


>gi|320159714|ref|YP_004172938.1| putative N-4 cytosine-specific methyltransferase [Anaerolinea
           thermophila UNI-1]
 gi|319993567|dbj|BAJ62338.1| putative N-4 cytosine-specific methyltransferase [Anaerolinea
           thermophila UNI-1]
          Length = 304

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 111/283 (39%), Gaps = 29/283 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II  +S   + +L   +V L    PPY   ++   +  D S         + +  +  Y 
Sbjct: 3   IIYTHSCERMPELEEGAVSLTVTSPPYWNAIDYDRHAEDDSQYYRTRQYANGYQDYHEYL 62

Query: 83  AFTRAWLLACRRVLKPNG-TLWVIGS-------YHNIFRIGTMLQNLNFWILNDIVWRK- 133
            +         RV KP G    VIG+       Y   F + +    + +    DI+W K 
Sbjct: 63  DWLVRIFREVYRVTKPGGFCAVVIGTVLLEGKLYPVPFDMTSQFVQIGWEFYQDIIWHKC 122

Query: 134 -----------SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
                        P P +      N +  LI+  P P+        +  +   E  Q   
Sbjct: 123 TAGVKRAGVSIQKPYPGYFYPNIMNEY-ILIFRKPGPRIYE-----NRSQEEKEQAQYSI 176

Query: 183 DWL--IPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
           D L  + I +    +     + + HP   PE +  R++   + PGD+ILDPF GSG +  
Sbjct: 177 DRLFTMDIANNIWHIAPVPPKIIPHPAPFPEEIPFRLIQLYSYPGDLILDPFVGSGQTLK 236

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
           VA+ L R ++G E+ + Y+ +A +RI     L   +L  +  K
Sbjct: 237 VARHLGRPYVGYEVIEKYVQLAKQRIPEPLDLRQEQLIAVFDK 279


>gi|325978568|ref|YP_004288284.1| DNA methylase [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
 gi|325178496|emb|CBZ48540.1| DNA methylase [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
          Length = 424

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 106/239 (44%), Gaps = 31/239 (12%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQ----LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
           L  +S+DL   DPPYN+   G+    L  P+ +L D        F +F   DAF      
Sbjct: 180 LTGQSIDLYVTDPPYNVAYEGKTKAALTIPNDNLDDQA------FQTF-LVDAFHNV--- 229

Query: 91  ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNAH 149
              + LK  G  ++  +        T LQ + +     ++W K + +    GR+ +Q  H
Sbjct: 230 --DQYLKAGGVFYIWHADKERLAFSTALQQVGWLEKQALIWVKDSFV---LGRQDYQWQH 284

Query: 150 ETLIWASPSPKAKGY---TFNYDALKAANEDVQMRSDWLIPICSGSE-------RLRNKD 199
           E  ++    P A  Y    F+   +  +  + + + + +  I +          R+    
Sbjct: 285 EPCLYGW-KPGASHYFVSDFSQSTILESQLETKSKQELIALIKTYQANQPTSILRVNRPT 343

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
             + HPT KP ALL R++ SS+K GD +LD F GSG++    ++L R    +E++  Y+
Sbjct: 344 KNEDHPTMKPIALLERLIRSSSKRGDCVLDTFAGSGSTLLACERLGRKSYSMELEPKYV 402


>gi|313575369|emb|CBR26898.1| hypothetical protein [Streptococcus phage phi-SsUD.1]
          Length = 442

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 123/269 (45%), Gaps = 39/269 (14%)

Query: 20  KDKIIKGNSISVL---EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K ++I G+S       + L  K  +L+  DPPYN+ +     +    L D + DS  +F 
Sbjct: 195 KHRVICGDSTKAEIYDQLLGDKKANLVVTDPPYNVDVEETAGK---ILNDNMPDS--EFY 249

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            F  +D FT+       + ++ + +++V  +           ++  F++    +W+K++ 
Sbjct: 250 QF-LFDMFTQV-----EKHIESDASIYVFHADTEGLNFRKAFKDAGFYLSGCCIWKKNSL 303

Query: 137 MPNFRGRR-FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           +    GR  +Q  HE  ++     K K   F+         D +  + W        E  
Sbjct: 304 V---LGRSPYQWQHEPCLFGWKQ-KGKHQWFS---------DRKQTTIW--------EYD 342

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           R K   K HPT KP  L++  + +S+  G I+LDPF GSG++   A +  R   GIE+ +
Sbjct: 343 RPK-SSKDHPTMKPIPLMAYPIQNSSMRGTIVLDPFLGSGSTLIAADQTGRVCYGIELDE 401

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRT 284
            ++D+  KR   ++  GN  +TVL   +T
Sbjct: 402 KFVDVIVKRY--IESTGNDNVTVLRDGQT 428


>gi|238914011|ref|ZP_04657848.1| putative type III restriction/modification system modification
           methylase [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
          Length = 89

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           +G+E+++N  GEK     KPE L+   +  +T   DI+LD   GSGT+ AVA K+ R +I
Sbjct: 11  NGTEQMKNLFGEKAFKNPKPEELIQDFITITTNESDIVLDYHLGSGTTAAVAHKMNRQYI 70

Query: 250 GIEMKQDYID-IATKRIASV 268
           GIE + DYI+ +A +R+  V
Sbjct: 71  GIE-QMDYIETLAVERLKKV 89


>gi|262042203|ref|ZP_06015376.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040525|gb|EEW41623.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 258

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 99/256 (38%), Gaps = 50/256 (19%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I GN I V+   P  +VDLI  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 28  RFILGNCIDVMRGFPDHAVDLIVTDPPY---LIGFRDRQGRTIAGDKTDEWLQPACHEMY 84

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS------- 134
                       RVLK +  +    S++ + R     +   F+ +  +V+ K+       
Sbjct: 85  ------------RVLKKDALMVSFYSWNRVDRFMAAWKAAGFYAVGQLVFTKTYASNRRN 132

Query: 135 -NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
                 F     + A+  L    P P  K      D L               P    + 
Sbjct: 133 ARARRGFVDYCHEGAY-VLAKGRPVPPLKPLP---DVLP-------------FPYTGNTL 175

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
               K  E L P          ++ S + PG I+LDPF GSG++   A +  R +IGIEM
Sbjct: 176 HPTQKPVEALQP----------LIESFSAPGAIVLDPFAGSGSTCVAAYRAGRRYIGIEM 225

Query: 254 KQDYIDIATKRIASVQ 269
              Y    T+R+A++ 
Sbjct: 226 LAQYHRAGTERLAAMH 241


>gi|85716202|ref|ZP_01047177.1| DNA methylase N-4/N-6 [Nitrobacter sp. Nb-311A]
 gi|85697035|gb|EAQ34918.1| DNA methylase N-4/N-6 [Nitrobacter sp. Nb-311A]
          Length = 513

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 41/63 (65%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T KPEAL+ RIL  +T PGD++LD F GSGT+ AVA K  R +IGIEM +  +     R+
Sbjct: 302 TPKPEALIQRILHIATNPGDLVLDSFLGSGTTAAVAHKTGRRYIGIEMGEHSVTHCVPRL 361

Query: 266 ASV 268
             V
Sbjct: 362 NKV 364


>gi|260654820|ref|ZP_05860308.1| adenine specific DNA methylase Mod [Jonquetella anthropi E3_33 E1]
 gi|260630535|gb|EEX48729.1| adenine specific DNA methylase Mod [Jonquetella anthropi E3_33 E1]
          Length = 524

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 40/53 (75%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           +K  P  KPE L++RIL  ST+P D++LD F GSGT+ AVA+K+ R +IGIEM
Sbjct: 292 KKAFPYPKPEKLIARILDLSTEPNDLVLDSFLGSGTTCAVAQKMNRRYIGIEM 344


>gi|260910196|ref|ZP_05916873.1| DNA (cytosine-5-)-methyltransferase [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260635700|gb|EEX53713.1| DNA (cytosine-5-)-methyltransferase [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 439

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 102/248 (41%), Gaps = 31/248 (12%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
            V+  +  +  D+I  DPPYN+   G          D++ +        + +  F ++  
Sbjct: 202 DVVTLMGGRCADMILTDPPYNVAYEGGTEEKMKIENDSMEN--------DLFAQFLKSVF 253

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNA 148
                VLKP G+ +V  +          ++  NF I    +W K   +    GR+ +Q  
Sbjct: 254 ENMYAVLKPGGSFYVFHADSEGENFRKAIREANFKIAQCCIWVKDTLV---MGRQDYQWQ 310

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
           HE  +          Y +   A    N + +  + W         R       ++HPT K
Sbjct: 311 HEPCL----------YGWKLGAAHYWNSNRKQTTIW---------RFDKPRANRIHPTMK 351

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           P AL++  + +STK G+I++D F GSG++    ++  R    +E+   Y+  +  R  ++
Sbjct: 352 PVALMAYPICNSTKNGEIVVDLFSGSGSTIMACQQTDRIGYAMEIDPKYVAASVLRFKAM 411

Query: 269 QPLGNIEL 276
            P  +I L
Sbjct: 412 FPQADIRL 419


>gi|218961548|ref|YP_001741323.1| Type II restriction modification system, methylation subunit
           [Candidatus Cloacamonas acidaminovorans]
 gi|167730205|emb|CAO81117.1| Type II restriction modification system, methylation subunit
           [Candidatus Cloacamonas acidaminovorans]
          Length = 299

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 119/285 (41%), Gaps = 62/285 (21%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           E+ +K+I G S   ++++P  SV L+   PPYN                 V+  +DK  S
Sbjct: 50  EYLNKVILG-SAENMQEIPDNSVHLMITSPPYN-----------------VSKDYDKNLS 91

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR---------IGTMLQNLNFWILND 128
              Y            RVL   G   +  +  NI R         I  ++ N+ F +  +
Sbjct: 92  LRQYLELLENSFRETYRVLVNGGRACI--NVANIGRKPYIPLSDYISQIMINIGFNMRGE 149

Query: 129 IVWRK----------------SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
           I+W K                +NP+        ++ HE ++  S     KG   +Y+  K
Sbjct: 150 IIWNKASSASPSTAWGSWMSATNPI-------LRDIHEYILIFS-----KG---DYNRNK 194

Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPF 231
              +    + D+ I        ++ +  +K+ HP   PE L  R++   +   DIILDPF
Sbjct: 195 KGKQSTIRKEDF-IEWTKSVWVMKAESAKKIGHPAPFPEELPYRLIQLYSFQDDIILDPF 253

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
            GSGT+   + K  R FIG E++  YI++  +RI++      +EL
Sbjct: 254 MGSGTTAISSLKSHRYFIGYEIEPAYIELCNRRISTYLDQLTLEL 298


>gi|147669683|ref|YP_001214501.1| DNA methylase N-4/N-6 domain-containing protein [Dehalococcoides
           sp. BAV1]
 gi|146270631|gb|ABQ17623.1| DNA methylase N-4/N-6 domain protein [Dehalococcoides sp. BAV1]
          Length = 733

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 49/72 (68%), Gaps = 1/72 (1%)

Query: 199 DGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           D EK+ +PTQKPEALL RI+ +S+  GD++ D F GSGT+ AVA+KL R +I  ++ +  
Sbjct: 339 DQEKVGYPTQKPEALLERIIKASSNEGDLVADFFCGSGTTAAVAEKLGRKWIATDLGKFA 398

Query: 258 IDIATKRIASVQ 269
           +    KR+  VQ
Sbjct: 399 VHTTRKRMIGVQ 410


>gi|86281699|gb|ABC90762.1| probable DNA-methyltransferase protein (hemagglutinin-associated
           protein) [Rhizobium etli CFN 42]
          Length = 201

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 107/239 (44%), Gaps = 41/239 (17%)

Query: 29  ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
           ++++++L   SVD I  DPPY ++   +  R   +  +AV   W K +  E +       
Sbjct: 1   MTLMQRLQGGSVDFILTDPPYLVRYRDRRGRTVANDNNAV---WLKPAFAEMH------- 50

Query: 89  LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
                RVLKP         ++++ R     +   F ++  +V+ KS        +RF   
Sbjct: 51  -----RVLKPGRLAVSFYGWNHVDRFMEAWRKAGFRVVGHLVFVKSYA----SSQRFVRY 101

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
           H    +      AKG     DA   A     +   W            +  G ++HPTQK
Sbjct: 102 HHEQAYVL----AKG-----DAAPPAQPIADVLP-W------------DYTGNRMHPTQK 139

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           P   L +I+ + +KPG+++LDPF GSG++   A +  R ++G+E++  +   A+ R+ S
Sbjct: 140 PLRPLEQIIRAFSKPGELVLDPFCGSGSTLLAAARSGRDYLGMELEHRHQLTASLRVHS 198


>gi|240118154|ref|ZP_04732216.1| putative type III restriction/modification system modification
           methylase [Neisseria gonorrhoeae PID1]
          Length = 492

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           +G+E+++N  GEK     KPE L+   +  +T   DI+LD   GSGT+ AVA K+ R +I
Sbjct: 276 NGTEQMKNLFGEKAFKNPKPEELIQDFITITTNENDIVLDYHLGSGTTAAVAHKMNRQYI 335

Query: 250 GIEMKQDYID-IATKRIASV 268
           GIE + DYI+ +A +R+  V
Sbjct: 336 GIE-QMDYIETLAVERMKKV 354


>gi|332971258|gb|EGK10221.1| DNA (cytosine-5-)-methyltransferase [Desmospora sp. 8437]
          Length = 228

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 111/250 (44%), Gaps = 35/250 (14%)

Query: 32  LEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDAVTDSW---DKFSSFEAYDAFT 85
           ++ LP++ +D +  DPPY   + Q +G+  R  + +    +  W   D  S+ + +  F 
Sbjct: 4   MKNLPSEILDAVITDPPYCSGSRQESGKGQR--NRMTTTKSSRWFGGDGLST-QGFLWFM 60

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
           R   L   R+LKP G + V   +  +  +   +++ +F   + +VW K+       G  F
Sbjct: 61  RQCALEWNRLLKPGGHVLVFIDWRMMPYLAAAIESADFRYNSLLVWDKTYFT---MGACF 117

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
           +N HE ++  S   K KG     D     ++          P+ +G            HP
Sbjct: 118 RNQHELILHFS---KGKGVPQRRDVGNVLSQK---------PVRNGQ-----------HP 154

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T+KP  L+ R++        ++LD F GSGT+G    +  R ++ IE    Y +++ +R+
Sbjct: 155 TEKPVDLIQRLISVVCPEHGLVLDSFAGSGTTGVACLRSGRHYVLIERDPYYAEVSKERL 214

Query: 266 ASVQPLGNIE 275
            +   L  ++
Sbjct: 215 RAETELEKVD 224


>gi|159904415|ref|YP_001548077.1| DNA methylase N-4/N-6 domain-containing protein [Methanococcus
           maripaludis C6]
 gi|159885908|gb|ABX00845.1| DNA methylase N-4/N-6 domain protein [Methanococcus maripaludis C6]
          Length = 327

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 40/62 (64%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPTQKP  L   ++ ++TKP  ++L PF GSG      K L R+FIG E+ ++Y +IA K
Sbjct: 263 HPTQKPPKLSKMLIEATTKPESLVLVPFVGSGVECLSCKDLERNFIGFEIDENYFEIAKK 322

Query: 264 RI 265
           RI
Sbjct: 323 RI 324



 Score = 43.1 bits (100), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 20/139 (14%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I   +    ++ LP  SVDLI ADPPY                  +   +D   +F+ 
Sbjct: 4   NEIYNQDFFEGVKNLPDNSVDLIIADPPYY----------------NIKGDFDFRLTFDE 47

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN--PMP 138
           +           +RVLK NG++ + G   NI     +  +L F++ N++VW K++     
Sbjct: 48  WKDMHEKMAKEFKRVLKLNGSILLYGHAKNIAYQQVIFDDL-FFLENNLVWHKTDCQTRK 106

Query: 139 NFRGRR-FQNAHETLIWAS 156
           N +G R F    E +++ S
Sbjct: 107 NIKGYRCFAPVTERILFYS 125


>gi|92116412|ref|YP_576141.1| DNA methylase N-4/N-6 [Nitrobacter hamburgensis X14]
 gi|91799306|gb|ABE61681.1| DNA methylase N-4/N-6 [Nitrobacter hamburgensis X14]
          Length = 436

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 17/192 (8%)

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           S E +  F R W+  C    KP    +V   + ++    T    +   + N  VW K+N 
Sbjct: 226 SPEQFVNFQRQWMELCSEFSKPGSIHFVFIDWRHLSEALTAGHAVYSELKNVAVWCKTNA 285

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV----QMRSDWLIPICSGS 192
               +G  +++ HE ++             N DA    N ++    + RS+        +
Sbjct: 286 G---QGSFYRSQHELILVFK----------NGDAPHQNNIELGRHGRNRSNVWTYAGVNT 332

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
            R    D   +HPT KP  L+   +   ++ GDI+LDPF GSGT+   A+++ R   GIE
Sbjct: 333 FRAGRMDDLSVHPTVKPVGLVLDAIKDCSRRGDIVLDPFMGSGTTILAAERVDRRGFGIE 392

Query: 253 MKQDYIDIATKR 264
           +   Y+D+A +R
Sbjct: 393 IDPLYVDVAIRR 404


>gi|32266743|ref|NP_860775.1| adenine-specific DNA methylase [Helicobacter hepaticus ATCC 51449]
 gi|32262794|gb|AAP77841.1| adenine-specific DNA methylase [Helicobacter hepaticus ATCC 51449]
          Length = 227

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 102/235 (43%), Gaps = 41/235 (17%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLN-------GQLYRPDHSLVDAVTDSWDKFS 76
           +K + + +L  + ++S+DL F DP Y   L+       G+  R   +L+    ++   F 
Sbjct: 23  LKIDGLELLSMIESQSIDLCFFDPQYRGVLDKMKYGNEGERQRGRANLMQMSEENIIHF- 81

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
                       L    RVLK +  L + I  +H    I   L+N N  I++ I W K  
Sbjct: 82  ------------LQEIARVLKLSKYLMLWIDKFHLCEGIHQWLKNTNLQIVDLITWDKQK 129

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
               +R RR   +   LI      KAKG            E   +R  W       SE++
Sbjct: 130 MGMGYRTRR--QSEYLLILQKKPLKAKG----------TWERKNIRDIW-------SEKI 170

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
            + D  K+HP  KP+ L S ++ S TK G+++LDP  GS +     ++L R FIG
Sbjct: 171 PS-DSIKIHPHTKPKGLQSALIESCTKVGEVVLDPASGSFSVLECCRELNRHFIG 224


>gi|67921543|ref|ZP_00515061.1| DNA methylase N-4/N-6 [Crocosphaera watsonii WH 8501]
 gi|67856655|gb|EAM51896.1| DNA methylase N-4/N-6 [Crocosphaera watsonii WH 8501]
          Length = 319

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 43/69 (62%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           + ++LHPTQKP  L+ RI+ +S+    I+LDPF GSG++      L R +IGIE +  YI
Sbjct: 224 EEKRLHPTQKPVKLIERIIRASSHKNMIVLDPFMGSGSTAIACLNLNRYYIGIEKEDKYI 283

Query: 259 DIATKRIAS 267
           +    RIA 
Sbjct: 284 EKINSRIAQ 292



 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 16/104 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFE 79
           +KIIKG+ + +L++LP KS+DLI  DPPY                  V   WD ++ + E
Sbjct: 5   NKIIKGDCLEILQELPDKSIDLIVLDPPY---------------WKVVQQKWDYQWRTEE 49

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
            Y  +   WL    RV+K +G+L++ G   N+F +   +  L F
Sbjct: 50  DYQKWCLQWLTEIARVIKLSGSLYLFGYLRNLFYLYEPIIKLGF 93


>gi|282164296|ref|YP_003356681.1| putative DNA methylase [Methanocella paludicola SANAE]
 gi|282156610|dbj|BAI61698.1| putative DNA methylase [Methanocella paludicola SANAE]
          Length = 293

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 107/250 (42%), Gaps = 41/250 (16%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           +++LP  SV L+   PPYN+   G+ Y  D +L              + Y A        
Sbjct: 64  MDELPDNSVHLMVTSPPYNV---GKEYDDDLTL--------------DEYRALLFCVWEE 106

Query: 92  CRRVLKPNGTLWV----IGSYHNIFRIGTMLQNL---NFWILNDIVWRKSNPM------- 137
             RVL P G + +    +G    +     M ++L    F +  +++W K++         
Sbjct: 107 VYRVLVPGGRVCLNVANLGRKPYLPLHAFMAEDLLKAGFLMRGEVIWNKASAAGTSTAWG 166

Query: 138 --PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
              + +    ++ HE ++  S    ++        +         +S W      GSE  
Sbjct: 167 SWQSAKNPTLRDVHEYILVFSKQSYSRTPGDKRSTITKEEFLEYTKSVWSF----GSESA 222

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           + K G   HP   P  L SR +   T  GD++LDPF GSGT+   AK L R ++G E+ +
Sbjct: 223 K-KIG---HPAPYPVELPSRCIKLYTFEGDVVLDPFIGSGTTAVAAKMLDRHYVGYEVDE 278

Query: 256 DYIDIATKRI 265
           +Y+++A +R+
Sbjct: 279 EYVELARRRL 288


>gi|260170368|ref|ZP_05756780.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides sp.
           D2]
 gi|315918727|ref|ZP_07914967.1| DNA methylase [Bacteroides sp. D2]
 gi|313692602|gb|EFS29437.1| DNA methylase [Bacteroides sp. D2]
          Length = 326

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 107/288 (37%), Gaps = 71/288 (24%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +K+I+G+ +++L  +P KS+D+I  D PY    N                 WD     +A
Sbjct: 35  NKVIQGDCLNILPSIPDKSIDMILCDLPYGTTQN----------------KWDSVIDLQA 78

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                  W     R++K NG   ++ +   IF    +L     +    I W KS P  NF
Sbjct: 79  ------LWA-EYERIIKDNGA--IVLTAQGIFTAKLILSKEKLFKYK-ITWIKSKPT-NF 127

Query: 141 RGRRFQ--NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI---------PIC 189
              + Q    HE +         K   +N    K    D  +R D             + 
Sbjct: 128 LNAKKQPLRKHEDVCVFY----KKQSVYNPQMTKGEAYDKGVRKDQYTGSYGEFKPQHVK 183

Query: 190 SGSERLRN-------------------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
           S  ER  N                    +GE  HPTQKP  L   ++ + + PGDIILD 
Sbjct: 184 SDGERYPNDVVFFEEDHDDFVYVKTAESEGEVYHPTQKPVELGRYLIRTFSNPGDIILDN 243

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQ----------DYIDIATKRIASV 268
             GSG+    A    R FIGIE  +          DYI I   RI+  
Sbjct: 244 ACGSGSFLLSAILENRRFIGIEKNEDVLLHRIQPTDYIKICMDRISET 291


>gi|167717505|ref|ZP_02400741.1| DNA methylase N-4/N-6 domain protein [Burkholderia pseudomallei
           DM98]
          Length = 370

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 43/69 (62%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+ L  T KPE+L+ R+L   + PGD++ DP+ GSGT+ AVA K  R F+GIE  +    
Sbjct: 276 GDPLFDTPKPESLIWRVLHIGSDPGDLVFDPYLGSGTTAAVAMKSGRRFVGIESGEHAAS 335

Query: 260 IATKRIASV 268
           IA  R+  V
Sbjct: 336 IAAARMRQV 344


>gi|240080531|ref|ZP_04725074.1| putative type III restriction/modification system modification
           methylase [Neisseria gonorrhoeae FA19]
          Length = 492

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           +G+E+++N  GEK     KPE L+   +  +T   DI+LD   GSGT+ AVA K+ R +I
Sbjct: 276 NGTEQMKNLFGEKAFKNPKPEELIQDFITITTNENDIVLDYHLGSGTTAAVAHKMNRQYI 335

Query: 250 GIEMKQDYID-IATKRIASV 268
           GIE + DYI+ +A +R+  V
Sbjct: 336 GIE-QMDYIETLAVERMKKV 354


>gi|309785587|ref|ZP_07680218.1| uncharacterized adenine-specific methylase yhdJ domain protein
           [Shigella dysenteriae 1617]
 gi|308926707|gb|EFP72183.1| uncharacterized adenine-specific methylase yhdJ domain protein
           [Shigella dysenteriae 1617]
          Length = 200

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 77/153 (50%), Gaps = 26/153 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+KLP +SV+LIFADPPYN+  N           D + ++W         +
Sbjct: 17  IIHGDALAELKKLPTESVNLIFADPPYNIGKN----------FDGLIEAWK--------E 58

Query: 83  AFTRAWLL----ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           A    WL      C RVLK  G+++++ S  N+  I    + L F I + IVW   +   
Sbjct: 59  ALFIDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGV 117

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
             + + + + +E ++       AK YTFN DA+
Sbjct: 118 QAK-KHYGSMYEPILMMVKD--AKNYTFNGDAI 147


>gi|60202514|gb|AAX14643.1| DNA methyltransferase [Geobacillus stearothermophilus]
          Length = 447

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 43/67 (64%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           + EK+H  QKP  L+  ++   T+ G +ILDPF GSGT+   AK+L R+FI  E+ + Y 
Sbjct: 367 EEEKVHDAQKPIELIKYLINIMTREGQVILDPFVGSGTTAVAAKELNRNFIAFEINEHYH 426

Query: 259 DIATKRI 265
            +A KR+
Sbjct: 427 SLANKRL 433


>gi|312864600|ref|ZP_07724831.1| DNA (cytosine-5-)-methyltransferase [Streptococcus downei F0415]
 gi|311099727|gb|EFQ57940.1| DNA (cytosine-5-)-methyltransferase [Streptococcus downei F0415]
          Length = 456

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 87/204 (42%), Gaps = 33/204 (16%)

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMPNFRGRRFQNAH 149
            R VL  +G++++   +H    I  ++  +      +N+I+W           + F   H
Sbjct: 2   LREVLSDDGSIYIHLDWHKAHYIKVLMDEVFGEGRFINNIIWSYRTGAGG--KKEFNKQH 59

Query: 150 ETLIWASPSP-------------KAKGYTFNYDALKAANEDV-----------QMRSDWL 185
           + ++  S +              KAKG          +N +             MR  W 
Sbjct: 60  DDILLYSKTEHRIFNQLKEKSYTKAKGRKAGITNYGGSNTEFFEDSNGVYRWSTMRDVWD 119

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           IP  +   + R       +PTQKPE LL RI+  S+  GD++LD F GSGT+ AVA+KL 
Sbjct: 120 IPYINSQAKERVG-----YPTQKPEKLLERIIKVSSNEGDLVLDCFGGSGTTAAVAEKLG 174

Query: 246 RSFIGIEMKQDYIDIATKRIASVQ 269
           R +I ++     I    KRI  ++
Sbjct: 175 RRWITVDAGILSIYTIQKRILGLE 198


>gi|315637799|ref|ZP_07892991.1| type III R-M system methyltransferase [Campylobacter upsaliensis
           JV21]
 gi|315482142|gb|EFU72754.1| type III R-M system methyltransferase [Campylobacter upsaliensis
           JV21]
          Length = 670

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/65 (52%), Positives = 44/65 (67%), Gaps = 1/65 (1%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           D   L  T KPEAL+ RI+  ST   D+++D F GSGT+ AVA K++R FIGIE + DYI
Sbjct: 463 DNTTLFATPKPEALIKRIIEISTNENDLVMDFFAGSGTTLAVAHKMKRRFIGIE-QMDYI 521

Query: 259 DIATK 263
           +  TK
Sbjct: 522 ESITK 526


>gi|240125893|ref|ZP_04738779.1| putative type III restriction/modification system modification
           methylase [Neisseria gonorrhoeae SK-92-679]
          Length = 503

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           +G+E+++N  GEK     KPE L+   +  +T   DI+LD   GSGT+ AVA K+ R +I
Sbjct: 287 NGTEQMKNLFGEKAFKNPKPEELIQDFITITTNENDIVLDYHLGSGTTAAVAHKMNRQYI 346

Query: 250 GIEMKQDYID-IATKRIASV 268
           GIE + DYI+ +A +R+  V
Sbjct: 347 GIE-QMDYIETLAVERMKKV 365


>gi|299135951|ref|ZP_07029135.1| DNA methylase N-4/N-6 domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298602075|gb|EFI58229.1| DNA methylase N-4/N-6 domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 305

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 121/297 (40%), Gaps = 58/297 (19%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLN-----------------------GQLYR 59
           I++G+S+S+L+ +   S+DLI +D PY +  +                       G +++
Sbjct: 8   ILEGDSVSLLKGVHDSSIDLILSDIPYGIGADDWDVLHDNTNSAYLGSSPAQDKAGAIFK 67

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
                ++  +++ D+    + YD +   W     RVLKP G+  V        R    ++
Sbjct: 68  KRGKPLNGWSEA-DRAIPKQYYD-WCLTWAPDWLRVLKPGGSAIVFAGRRLSHRCVAAME 125

Query: 120 NLNF-------WILNDIVWRKSNPMPNFRGR-RFQN--------------AHETLIW-AS 156
           +  F       W+ +    R       F  R  F N                E ++W   
Sbjct: 126 DSGFTYKDMLGWLRDRAAHRAQRLSVVFERRGDFDNRDKWEGWKVGNLRPTFEPILWFVK 185

Query: 157 PSPKAKGYTFNY--DALKAANEDVQMRSDWL---IPICSGSERLRNKDGEKLHPTQKPEA 211
           P P  K    N     L A NE   +R       + +C     + + +G  LHPTQKP  
Sbjct: 186 PYPIGKTIADNVLNHGLGAFNERALLRYQSQPNNVIVCG----MESGEG-GLHPTQKPVR 240

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           L+  ++  +T  G ++LDPF GSG++   A+   R F+G E    + +IA +R+  V
Sbjct: 241 LMRALIELTTIEGQLVLDPFCGSGSTLVAAQASNRQFLGFEQDAHFCEIARERLDDV 297


>gi|167841358|ref|ZP_02468042.1| DNA methylase N-4/N-6 domain protein [Burkholderia thailandensis
           MSMB43]
          Length = 213

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 98/252 (38%), Gaps = 55/252 (21%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+ +  + +L  +SVD I  DPPY +       R   S+ + V D W   +  E + 
Sbjct: 4   LYNGDCLVAMPQLAPESVDCIVTDPPYLVNFRD---RSGRSIANDVNDGWLAPAFAEMF- 59

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
                      RVLK +        ++ +       +   F +    V+ KS      + 
Sbjct: 60  -----------RVLKRDAVCISFYGWNKVDLFFDAWKAAGFRVAGHFVFTKSYAS---KA 105

Query: 143 RRFQNAHETLIW------ASPS-PKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
              +  HE+         A+P+ P A    F Y                           
Sbjct: 106 GLVKYQHESAYLLAKGRPAAPAEPIADVMPFPYS-------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ + T+PG+ +LDPF GSG++   A++L R +IGIE+  
Sbjct: 140 ----GNRHHPTEKPVPALRTLIAAFTQPGETVLDPFAGSGSTCVAARELGRRYIGIELDA 195

Query: 256 DYIDIATKRIAS 267
            Y   A  R+ +
Sbjct: 196 TYFAAAKARLTA 207


>gi|207108804|ref|ZP_03242966.1| type II restriction enzyme M protein (hsdM) [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 113

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 55/97 (56%), Gaps = 5/97 (5%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
           Y+ LK  N D QMR  W  P  +  E+   K     HPTQKP ALL R+L+ ++    +I
Sbjct: 1   YEVLKKINNDKQMRDVWNFPAIAPWEKANGK-----HPTQKPLALLVRLLLMASDENSLI 55

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            DPF GS T+G  A  L+R FIGIE +  +I I+  R
Sbjct: 56  GDPFSGSSTTGIAANLLKREFIGIEKESGFIKISMDR 92


>gi|302390120|ref|YP_003825941.1| DNA methylase N-4/N-6 domain protein [Thermosediminibacter oceani
           DSM 16646]
 gi|302200748|gb|ADL08318.1| DNA methylase N-4/N-6 domain protein [Thermosediminibacter oceani
           DSM 16646]
          Length = 851

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 44/64 (68%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PT+  E LL R++ S++K GD+++D F GSGT+ AVA KL+R +IG+EM + +  +   R
Sbjct: 642 PTENSEILLKRVIESTSKEGDLVMDFFLGSGTTTAVAHKLKRKWIGVEMGEHFYTVVLPR 701

Query: 265 IASV 268
           +  V
Sbjct: 702 MKKV 705


>gi|240123702|ref|ZP_04736658.1| putative type III restriction/modification system modification
           methylase [Neisseria gonorrhoeae PID332]
 gi|268682334|ref|ZP_06149196.1| type III restriction/modification system modification methylase
           [Neisseria gonorrhoeae PID332]
 gi|268622618|gb|EEZ55018.1| type III restriction/modification system modification methylase
           [Neisseria gonorrhoeae PID332]
          Length = 724

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           +G+E+++N  GEK     KPE L+   +  +T   DI+LD   GSGT+ AVA K+ R +I
Sbjct: 508 NGTEQMKNLFGEKAFKNPKPEELIQDFITITTNENDIVLDYHLGSGTTAAVAHKMNRQYI 567

Query: 250 GIEMKQDYID-IATKRIASV 268
           GIE + DYI+ +A +R+  V
Sbjct: 568 GIE-QMDYIETLAVERMKKV 586


>gi|254670016|emb|CBA04773.1| type III restriction-modification system: methylase [Neisseria
           meningitidis alpha153]
          Length = 349

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           +G+E+++N  GEK     KPE L+   +  +T   DI+LD   GSGT+ AVA K+ R +I
Sbjct: 133 NGTEQMKNLFGEKAFKNPKPEELIQDFITITTNESDIVLDYHLGSGTTAAVAHKMNRQYI 192

Query: 250 GIEMKQDYID-IATKRIASV 268
           GIE + DYI+ +A +R+  V
Sbjct: 193 GIE-QMDYIETLAVERLKKV 211


>gi|308389493|gb|ADO31813.1| putative type III restriction/modification methylase [Neisseria
           meningitidis alpha710]
          Length = 723

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           +G+E+++N  GEK     KPE L+   +  +T   DI+LD   GSGT+ AVA K+ R +I
Sbjct: 512 NGTEQMKNLFGEKAFKNPKPEELIQDFITITTNENDIVLDYHLGSGTTAAVAHKMNRQYI 571

Query: 250 GIEMKQDYID-IATKRIASV 268
           GIE + DYI+ +A +R+  V
Sbjct: 572 GIE-QMDYIETLAVERLKKV 590


>gi|302383110|ref|YP_003818933.1| DNA methylase N-4/N-6 domain protein [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193738|gb|ADL01310.1| DNA methylase N-4/N-6 domain protein [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 478

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 101/234 (43%), Gaps = 20/234 (8%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYR--PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLAC 92
           L  + V ++F DPPYN+ + G +         V A  +  D     + + AF+   ++  
Sbjct: 200 LTGEQVRVVFTDPPYNVAIAGHVTSGGKHGEFVMASGEMTD-----DEFTAFSTKVMMRA 254

Query: 93  RRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW-RKSNPMPNFRGRRFQNAHET 151
           R  L   G L+    + ++              LN IVW +K+  M +F    +++ HE 
Sbjct: 255 RENLVDGGLLYYCMDHRHMEHTLDAASAAGLDRLNLIVWDKKAGGMGSF----YRSRHE- 309

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSD-WLIPICSGSERLRNKDGEKLHPTQKPE 210
           LI+    P A     N   L     D   RS+ W     +G    + K   ++HPT KP 
Sbjct: 310 LIFLFRKPGAS--HVNRVELGRHGRD---RSNVWTYEGVNGFGAAKAK-AREMHPTVKPL 363

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           AL+   ++  T  GD +LD F GSGT+   A+ + R     E+   Y+D+   R
Sbjct: 364 ALVRDAILDCTAKGDAVLDLFSGSGTTVIAAENVGRRGFATELDPRYVDVGVLR 417


>gi|85857855|ref|YP_460057.1| DNA modification methylase [Syntrophus aciditrophicus SB]
 gi|85720946|gb|ABC75889.1| DNA modification methylase [Syntrophus aciditrophicus SB]
          Length = 292

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 116/284 (40%), Gaps = 57/284 (20%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I  G+S   L+ LP  SVDLI   PPY  Q     Y   H          DK+ +     
Sbjct: 7   IYLGDSREQLKLLPDDSVDLIVTSPPYADQ-RKNTYGGIHP---------DKYVN----- 51

Query: 83  AFTRAWLLACR----RVLKPNGTLW------VIGSYHNIFRIGTMLQ-NLNFWI-LNDIV 130
                W L       RVLKP GT        V+    + + +  +L+     W+   + +
Sbjct: 52  -----WFLPISVQLLRVLKPTGTFILNIKEKVVEGERSTYVMELILEMRKQGWLWTEEFI 106

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT---------FNYDALKAANEDVQMR 181
           W K N  P     RF++A E L+  + + K   Y          +    LK  +E  ++R
Sbjct: 107 WHKKNCYPGKWPNRFRDAWERLLQFNKNRKFHMYQEEVMVQMGEWANSRLKNLSETDKIR 166

Query: 182 -------------SDWL---IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
                        S+WL       +    L  +   K H    PE L    +   TK  D
Sbjct: 167 DNSKVGSGFGKNISNWLERDKAYPTNVLHLATECNNKNHSAAFPEGLPEWFIKLFTKEKD 226

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            +LDPF GSGT+  VA ++RR+ IGI++  +Y ++  K++ +V+
Sbjct: 227 TVLDPFMGSGTTLIVANRMRRNSIGIDIVPEYCEMVKKQLKAVE 270


>gi|325198519|gb|ADY93975.1| conserved hypothetical protein [Neisseria meningitidis G2136]
          Length = 736

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           +G+E+++N  GEK     KPE L+   +  +T   DI+LD   GSGT+ AVA K+ R +I
Sbjct: 520 NGTEQMKNLFGEKAFKNPKPEELIQDFITITTNESDIVLDYHLGSGTTAAVAHKMNRQYI 579

Query: 250 GIEMKQDYID-IATKRIASV 268
           GIE + DYI+ +A +R+  V
Sbjct: 580 GIE-QMDYIETLAVERLKKV 598


>gi|254672179|emb|CBA05031.1| type III restriction-modification system: methylase [Neisseria
           meningitidis alpha275]
          Length = 344

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           +G+E+++N  GEK     KPE L+   +  +T   DI+LD   GSGT+ AVA K+ R +I
Sbjct: 133 NGTEQMKNLFGEKAFKNPKPEELIQDFITITTNESDIVLDYHLGSGTTAAVAHKMNRQYI 192

Query: 250 GIEMKQDYID-IATKRIASV 268
           GIE + DYI+ +A +R+  V
Sbjct: 193 GIE-QMDYIETLAVERLKKV 211


>gi|150401965|ref|YP_001329259.1| DNA methylase N-4/N-6 domain-containing protein [Methanococcus
           maripaludis C7]
 gi|150032995|gb|ABR65108.1| DNA methylase N-4/N-6 domain protein [Methanococcus maripaludis C7]
          Length = 325

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 40/62 (64%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPTQKP  L   ++ ++TKP  ++L PF GSG      K+L R+FIG E+ ++Y +IA  
Sbjct: 263 HPTQKPPKLTKMLIEATTKPESLVLVPFVGSGVECVTCKELERNFIGFEIDENYFEIAKN 322

Query: 264 RI 265
           R+
Sbjct: 323 RL 324



 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 19/126 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I   +    ++KL   SVDLI ADPPY                  +   +D   +F+ 
Sbjct: 4   NEIYNQDFFEGVKKLSNNSVDLIIADPPYY----------------NIKGDFDFKLNFDE 47

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN--PMP 138
           +           +RVLK NG++ + G   NI     +  +L F++ N++VW K++     
Sbjct: 48  WKILHEKMAKEFKRVLKLNGSILLYGHARNIAYQQVIFDDL-FFLENNLVWHKTDCQTRK 106

Query: 139 NFRGRR 144
           N +G R
Sbjct: 107 NIKGYR 112


>gi|147919272|ref|YP_686992.1| putative N6 adenine-specific DNA methyltransferase [uncultured
           methanogenic archaeon RC-I]
 gi|110622388|emb|CAJ37666.1| putative N6 adenine-specific DNA methyltransferase [uncultured
           methanogenic archaeon RC-I]
          Length = 307

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 119/295 (40%), Gaps = 63/295 (21%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           + QK S    EN     +  D+I   +S   +E+LP  SV L+   PPYN+   G+ Y  
Sbjct: 49  LVQKKSAGYVENSVPA-DRMDQIFACSS-EQMEELPDCSVHLMVTSPPYNV---GKEYDE 103

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM--- 117
           D +L              E  D  +R W     RVL P G   V     N+  +G     
Sbjct: 104 DLTLQ-------------EYRDFLSRVWK-ETYRVLVPGGRACV-----NVANLGRKPYL 144

Query: 118 ---------LQNLNFWILNDIVWRKS-NPMPNFRGRRFQNA--------HETLIWASP-- 157
                    L    F +  +I+W K+    P+     +Q+A        HE ++  S   
Sbjct: 145 SLSSLLTADLLEAGFLMRGEIIWNKAATASPSTAWGSWQSASNPTLRDVHEYILVFSKDT 204

Query: 158 ---SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
              + K +  T   D      + V     W      G+E  R K G   HP   P  L +
Sbjct: 205 FSRAGKGRTSTITRDEFLEYTKSV-----WTF----GAESAR-KIG---HPAPFPVELPA 251

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           R +   T  GD++LDPF GSGT+   A +  R F+G E+  +Y++ A  RI + Q
Sbjct: 252 RCIKLYTFEGDVVLDPFMGSGTTAVAALQNGRHFVGYEIDPEYVEKAEARIRACQ 306


>gi|325983433|ref|YP_004295835.1| DNA methylase N-4/N-6 domain-containing protein [Nitrosomonas sp.
           AL212]
 gi|325532952|gb|ADZ27673.1| DNA methylase N-4/N-6 domain protein [Nitrosomonas sp. AL212]
          Length = 292

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 112/284 (39%), Gaps = 57/284 (20%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I  G+S   L+ LP  S+DLI   PPY  Q         H          DK+       
Sbjct: 7   IYHGDSAEQLKLLPNDSIDLIITSPPYADQRKNTYGGIHH----------DKYVE----- 51

Query: 83  AFTRAWLLACR----RVLKPNGTLW------VIGSYHNIFRIGTMLQ-NLNFWI-LNDIV 130
                W L       RVLKP GT        V+    + + I  +L+     W+   + +
Sbjct: 52  -----WFLPISAQLLRVLKPTGTFVLNIKEKVVEGERSTYVIELVLEMRKQGWLWTEEFI 106

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT---------FNYDALKAANEDVQMR 181
           W K N  P     RF++A E L+  + + K   Y          +    LK  +E  + R
Sbjct: 107 WHKKNCYPGKWPNRFRDAWERLLQFNKNRKFNMYQEEVMVPMGDWANSRLKNLSETDKFR 166

Query: 182 -------------SDWLI---PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
                        S+WL       S    L  +   K H    PE L    +   TK  D
Sbjct: 167 DNSKVGSGFGKNISNWLYRKKAYPSNVLHLATECNNKNHSAAFPEELPEWFIKLFTKEND 226

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            +LDPF GSGT+  VA +++R+ +GI++  +Y ++  K++  V+
Sbjct: 227 RVLDPFMGSGTTLIVANRMKRNSVGIDIVPEYCEMVRKQLKPVE 270


>gi|207110827|ref|ZP_03244989.1| putative type III DNA modification enzyme (methyltransferase)
           [Helicobacter pylori HPKX_438_CA4C1]
          Length = 81

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 43/58 (74%), Gaps = 1/58 (1%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           T KPEAL+SRIL  +T   D++LD F GSGT+ AVA K++R +IGIE + DYI+  TK
Sbjct: 16  TPKPEALISRILEIATNENDLVLDFFAGSGTTCAVAHKMKRHYIGIE-QMDYIETITK 72


>gi|237743768|ref|ZP_04574249.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
 gi|229432799|gb|EEO43011.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
          Length = 261

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 57/100 (57%), Gaps = 5/100 (5%)

Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
           F  D L   N + +M  +W        E+   +  +K+HPTQKP A+L R++   T  GD
Sbjct: 155 FYRDKLPKFNNNGKMIKNWF-----NWEKDNKEKVKKIHPTQKPIAILKRLIEIFTDAGD 209

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           +++DP  GSGT+   AK+L+R+  G E+K+D   +A + +
Sbjct: 210 VVIDPCAGSGTTLRAAKELKRNSYGFEIKKDMYSLALEHM 249


>gi|325132432|gb|EGC55125.1| hypothetical protein NMBM6190_0834 [Neisseria meningitidis M6190]
          Length = 736

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           +G+E+++N  GEK     KPE L+   +  +T   DI+LD   GSGT+ AVA K+ R +I
Sbjct: 520 NGTEQMKNLFGEKAFKNPKPEELIQDFITITTNESDIVLDYHLGSGTTAAVAHKMNRQYI 579

Query: 250 GIEMKQDYID-IATKRIASV 268
           GIE + DYI+ +A +R+  V
Sbjct: 580 GIE-QMDYIETLAVERLKKV 598


>gi|303235921|ref|ZP_07322524.1| DNA (cytosine-5-)-methyltransferase [Prevotella disiens FB035-09AN]
 gi|302483794|gb|EFL46786.1| DNA (cytosine-5-)-methyltransferase [Prevotella disiens FB035-09AN]
          Length = 440

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 99/238 (41%), Gaps = 31/238 (13%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99
            D+I  DPPYN+   G          D +T   D   + + +  F ++      +V+KP 
Sbjct: 213 ADMILTDPPYNVNYEG-------GNDDKMTIQNDSMEN-DLFFRFLKSVFDVMYKVVKPG 264

Query: 100 GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNAHETLIWASPS 158
           G+ +V  +          ++   F I    +W K N +    GR+ +Q  HE  +     
Sbjct: 265 GSYYVFHADSEGENFRRAIREAGFKIAQCCIWVKDNFV---MGRQDYQWKHEPCL----- 316

Query: 159 PKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILV 218
                Y +   A    N D +  + W                 ++HPT KP AL++  + 
Sbjct: 317 -----YGWKKGAAHYWNSDRKQTTIW---------NFDKPKANRIHPTMKPIALMAYPIT 362

Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
           +STK G++I+D F GSG++    ++  R   G+E+   Y+    +R   + P   I+L
Sbjct: 363 NSTKNGELIVDFFSGSGSTIMACQQTDRIGYGMEIDPKYVTATVRRFMGMFPQQGIQL 420


>gi|255994270|ref|ZP_05427405.1| DNA (cytosine-5-)-methyltransferase [Eubacterium saphenum ATCC
           49989]
 gi|255993938|gb|EEU04027.1| DNA (cytosine-5-)-methyltransferase [Eubacterium saphenum ATCC
           49989]
          Length = 288

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 110/271 (40%), Gaps = 53/271 (19%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + II+G+++  + K+P+ +VD++  D PY    N                 WD     E 
Sbjct: 16  NNIIQGDTLEEMAKIPSGTVDMLLVDLPYGTTQN----------------KWDSLIPLE- 58

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                + W+    R++K NG +    S   +F    ML N   +     VW KS P  NF
Sbjct: 59  -----KLWM-EYNRIVKENGAMIFTAS--GLFTASLMLSNSKNYKYK-YVWEKSKPT-NF 108

Query: 141 RGRRFQ--NAHETLI-------WASP-----SPKAKGYTFNY--DALKAANEDVQMRSDW 184
              + Q    HE ++       +  P      P  KG   N    +    N  +   +  
Sbjct: 109 LNAKKQPLRKHEDILVFYRRQPYYCPQMTQGEPYTKGVRKNQLTGSYGEFNPTLVESNGE 168

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
             P+     +    +G+  HPTQK   L   ++ + +K GD+ILD   G+G+    A   
Sbjct: 169 RYPVDVLYFKTAESEGKVFHPTQKSVELARYLIRTFSKTGDVILDNTCGAGSFLVAAILE 228

Query: 245 RRSFIGIEMKQ----------DYIDIATKRI 265
            R+FIGIE  +          DYI+I+ KRI
Sbjct: 229 GRNFIGIEKNEDVALFKNKPVDYIEISKKRI 259


>gi|239999121|ref|ZP_04719045.1| putative type III restriction/modification system modification
           methylase [Neisseria gonorrhoeae 35/02]
 gi|268594957|ref|ZP_06129124.1| hypothetical protein NGBG_01248 [Neisseria gonorrhoeae 35/02]
 gi|268548346|gb|EEZ43764.1| hypothetical protein NGBG_01248 [Neisseria gonorrhoeae 35/02]
          Length = 736

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           +G+E+++N  GEK     KPE L+   +  +T   DI+LD   GSGT+ AVA K+ R +I
Sbjct: 520 NGTEQMKNLFGEKAFKNPKPEELIQDFITITTNENDIVLDYHLGSGTTAAVAHKMNRQYI 579

Query: 250 GIEMKQDYID-IATKRIASV 268
           GIE + DYI+ +A +R+  V
Sbjct: 580 GIE-QMDYIETLAVERMKKV 598


>gi|325201916|gb|ADY97370.1| conserved hypothetical protein [Neisseria meningitidis M01-240149]
          Length = 751

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           +G+E+++N  GEK     KPE L+   +  +T   DI+LD   GSGT+ AVA K+ R +I
Sbjct: 540 NGTEQMKNLFGEKAFKNPKPEELIQDFITITTNESDIVLDYHLGSGTTAAVAHKMNRQYI 599

Query: 250 GIEMKQDYID-IATKRIASV 268
           GIE + DYI+ +A +R+  V
Sbjct: 600 GIE-QMDYIETLAVERLKKV 618


>gi|121635081|ref|YP_975326.1| putative type III restriction/modification system modification
           methylase [Neisseria meningitidis FAM18]
 gi|120866787|emb|CAM10540.1| conserved hypothetical protein [Neisseria meningitidis FAM18]
          Length = 744

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           +G+E+++N  GEK     KPE L+   +  +T   DI+LD   GSGT+ AVA K+ R +I
Sbjct: 528 NGTEQMKNLFGEKAFKNPKPEELIQDFITITTNESDIVLDYHLGSGTTAAVAHKMNRQYI 587

Query: 250 GIEMKQDYID-IATKRIASV 268
           GIE + DYI+ +A +R+  V
Sbjct: 588 GIE-QMDYIETLAVERLKKV 606


>gi|113707431|gb|ABI36611.1| M2.NcuI DNA methyltransferase [Moraxella cuniculi]
          Length = 278

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 113/267 (42%), Gaps = 51/267 (19%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPD----HSLVDAVTDSWDKFSSFEAYDAFTRA 87
           ++++P  SV  I   PPY    N + Y  D    +S  +  T        +E Y      
Sbjct: 12  MKEVPNNSVHPIITSPPY---FNIKDYAKDGYQQNSHSNKHTSQIGDIDDYENYLIEMLQ 68

Query: 88  WLLACRRVLKPNGTLWV-----------IGSYH--NIFRIG-----TMLQNLNFWILNDI 129
               C RVL PNG L +           + +++  +IF +      T+L+N N ++++  
Sbjct: 69  VWRECERVLTPNGKLVINTPLMPMLKKDMNTHYTRHIFDLNSDIQQTILKNTNLFLMDTY 128

Query: 130 VWRKSN----------PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
           +W ++N          P P  R    QN  E +       K    +   D +K  ++  Q
Sbjct: 129 LWNRTNSSKKLMFGSYPYP--RNFYAQNTTEFVTIYVKDGKPNKVS---DEIKEKSKLTQ 183

Query: 180 M------RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
                  +  W IPI +     +N     +H    PE +  R++   +  GD +LDPF G
Sbjct: 184 QEWVEFTKQIWDIPIPN-----KNDLAFGVHSAIMPEEIPRRLIKLYSFYGDTVLDPFAG 238

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           SGT+  VAK+L R +IG E+ + Y +I
Sbjct: 239 SGTTLKVAKELGRKYIGFELMEKYSEI 265


>gi|290957416|ref|YP_003488598.1| restriction-modification system methyltransferase [Streptomyces
           scabiei 87.22]
 gi|260646942|emb|CBG70041.1| putative restriction-modification system methyltransferase
           [Streptomyces scabiei 87.22]
          Length = 592

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 1/72 (1%)

Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           + N+  EKL +PTQKP ALL RI+ +S+  GD++LDPF G GT+   A++L R +IGI++
Sbjct: 343 INNRAAEKLGYPTQKPLALLERIIATSSNEGDVVLDPFCGCGTTIDAAQRLGRRWIGIDI 402

Query: 254 KQDYIDIATKRI 265
               ID+   R+
Sbjct: 403 TTLAIDLIDARL 414



 Score = 39.3 bits (90), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 76/177 (42%), Gaps = 48/177 (27%)

Query: 21  DKIIKGNSISVLEK--LPAKSVDLIFADPPYNLQLNGQLYRPDHS------LVDAVTDSW 72
           +K+I G+++ +L    +P++SVDL++ DPP+N   +  +   D S       ++A  D+W
Sbjct: 59  NKLIYGDNLEILRGNLIPSQSVDLVYLDPPFNSNRSYNILFKDKSGEESPAQIEAFDDTW 118

Query: 73  DKFSSFE--------------------------------AYDAFTRAWLLACRRVLKPNG 100
           +     E                                AY     A L+   RVLK  G
Sbjct: 119 NWSHETEALYLELLEGDHPLAIKDALEAMRRLLGENDVLAYLTMMTARLIELHRVLKSTG 178

Query: 101 TLWV----IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           +L++      S++    +  +     F  L++I+W++++   + R RRF   H+ ++
Sbjct: 179 SLYLHCDPTASHYLKIVLDAIFGPEAF--LSEIIWKRTS--AHNRVRRFGPVHDVIL 231


>gi|42520154|ref|NP_966069.1| prophage LambdaW1, DNA methylase [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42409891|gb|AAS14003.1| prophage LambdaW1, DNA methylase [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|116486887|emb|CAH64687.1| DNA methylase [Wolbachia endosymbiont of Drosophila melanogaster]
 gi|116486889|emb|CAH64688.1| DNA methylase [Wolbachia endosymbiont of Drosophila melanogaster]
          Length = 409

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 101/233 (43%), Gaps = 37/233 (15%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           L  K  D+   DPPYN+       R D  +++   D  +K+  F  YD         C  
Sbjct: 185 LDDKMADITVCDPPYNVAYGDSQEREDKKILN--DDQGEKYELF-LYDI--------CSH 233

Query: 95  VLK-PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNAHETL 152
           VL    G +++  S   +  +  + +         I+W K++      GR  +Q  +ET+
Sbjct: 234 VLAYTKGAIYICASSSELATLQKVFEEAGGRWSTFIIWAKNHFT---LGRSDYQRQYETI 290

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEA 211
           ++   +   + +              + +SD W     + +          LHPT KP  
Sbjct: 291 LYGWKNGNKREWHGG-----------RNQSDLWFYDKPTYN---------SLHPTMKPVE 330

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           L+ R +V+S++PGDI+LDPF GSG++    ++  R    IE+   ++D+  KR
Sbjct: 331 LMERAIVNSSRPGDIVLDPFSGSGSTLIACERTGRICRTIELDPTFVDVTIKR 383


>gi|295107187|emb|CBL04730.1| DNA modification methylase [Gordonibacter pamelaeae 7-10-1-b]
          Length = 283

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 115/289 (39%), Gaps = 61/289 (21%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
           E+  SI    + II+G+ +  ++ +P +S+D++  D PY    N                
Sbjct: 11  EDTRSIEPLLNTIIEGDCLEKMKAIPDESIDMVLCDLPYGTTQN---------------- 54

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
            WD   + +    FT       RRV+KP G + +  S   +F    ML   + +    +V
Sbjct: 55  KWDSIINLDI--LFTEY-----RRVIKPRGVIALTSS--GLFTAKLMLHAADLYKYK-LV 104

Query: 131 WRKSNP--MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI-- 186
           W KS      N + +  +   +  I+    P     T++    +  + D  +R + L   
Sbjct: 105 WIKSKATNFLNAKKQPLRKYEDICIFYRSQP-----TYHPQMSQGESYDKGVRKNQLTGS 159

Query: 187 -----PICSGSERLR-----------NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
                P    S+  R             +G   HPTQKP  L   ++ + T PGD++LD 
Sbjct: 160 YGDFDPKHVQSDGSRYPTDIVYFKTAESEGPVYHPTQKPVELGRYLIRTYTDPGDVVLDN 219

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQ----------DYIDIATKRIASVQ 269
             GSG+    A    R +IGIE  +          DYI++  +R+   +
Sbjct: 220 ACGSGSFCVAACLEGRRYIGIEKNEGVARFKNEPIDYIEVCRRRLEEAR 268


>gi|210135567|ref|YP_002302006.1| type III R-M system methyltransferase [Helicobacter pylori P12]
 gi|210133535|gb|ACJ08526.1| type III R-M system methyltransferase [Helicobacter pylori P12]
          Length = 625

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 49/74 (66%), Gaps = 1/74 (1%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           G+E ++     ++    KPEAL+SRIL  +T   D++LD F GSGT+ AVA K++R +IG
Sbjct: 428 GTEEVKQIFKTQIFDFPKPEALISRILEIATNENDLVLDFFAGSGTTCAVAHKMKRRYIG 487

Query: 251 IEMKQDYIDIATKR 264
           IE + DYI+  TK 
Sbjct: 488 IE-QMDYIETITKE 500


>gi|268603870|ref|ZP_06138037.1| type III restriction/modification system modification methylase
           [Neisseria gonorrhoeae PID1]
 gi|268588001|gb|EEZ52677.1| type III restriction/modification system modification methylase
           [Neisseria gonorrhoeae PID1]
          Length = 618

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           +G+E+++N  GEK     KPE L+   +  +T   DI+LD   GSGT+ AVA K+ R +I
Sbjct: 402 NGTEQMKNLFGEKAFKNPKPEELIQDFITITTNENDIVLDYHLGSGTTAAVAHKMNRQYI 461

Query: 250 GIEMKQDYID-IATKRIASV 268
           GIE + DYI+ +A +R+  V
Sbjct: 462 GIE-QMDYIETLAVERMKKV 480


>gi|332800339|ref|YP_004461838.1| DNA methylase N-4/N-6 domain-containing protein [Tepidanaerobacter
           sp. Re1]
 gi|332698074|gb|AEE92531.1| DNA methylase N-4/N-6 domain protein [Tepidanaerobacter sp. Re1]
          Length = 463

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 110/264 (41%), Gaps = 49/264 (18%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           L  K  +L   DPPYN+       + +  L+       D+F  F    AF   +     +
Sbjct: 237 LDGKKANLAVTDPPYNVNFTAG--KENERLIKNDNQKDDEFYEF-LLAAFKNIY-----Q 288

Query: 95  VLKPNGTLWVIGS------YHNIFR-IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
            L   G L+V  +      + N  + +G  L  +  W+ + +V  +S+         +Q 
Sbjct: 289 ALADGGALYVFHADTEGLNFRNAVKEVGFHLSGVCIWVKDSLVLGRSD---------YQW 339

Query: 148 AHETLIWA-SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
            HE +I+   P+ + + Y            D +  + W         +       K HPT
Sbjct: 340 QHEPIIYCWKPTGRHRWYA-----------DRKQTTVW---------QFDRPKKSKEHPT 379

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
            KP AL +  + +S+ P  I+LDPF GS ++G   ++L R    IE+ + Y+D   KR  
Sbjct: 380 MKPVALCAYPIQNSSAPNGIVLDPFSGSFSTGIACEQLDRICYAIELDEKYVDAGVKRY- 438

Query: 267 SVQPLGNIELTVLTGKRTEPRVAF 290
            V+ +G+ +   L   R E ++ +
Sbjct: 439 -VEYMGSDDEVFLI--RDEKKIPY 459


>gi|268684491|ref|ZP_06151353.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268624775|gb|EEZ57175.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
          Length = 610

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           +G+E+++N  GEK     KPE L+   +  +T   DI+LD   GSGT+ AVA K+ R +I
Sbjct: 394 NGTEQMKNLFGEKAFKNPKPEELIQDFITITTNENDIVLDYHLGSGTTAAVAHKMNRQYI 453

Query: 250 GIEMKQDYID-IATKRIASV 268
           GIE + DYI+ +A +R+  V
Sbjct: 454 GIE-QMDYIETLAVERMKKV 472


>gi|315655129|ref|ZP_07908031.1| type III restriction/modification enzyme [Mobiluncus curtisii ATCC
           51333]
 gi|315490610|gb|EFU80233.1| type III restriction/modification enzyme [Mobiluncus curtisii ATCC
           51333]
          Length = 677

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 42/56 (75%), Gaps = 1/56 (1%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +KPE+L+ RIL+ +T+PGDI+ D F GSGT+ AVA K+ R +IG+E + DY+   T
Sbjct: 491 KKPESLIERILLLTTQPGDIVCDFFLGSGTTAAVAHKMGRRYIGVE-QMDYVSTVT 545


>gi|108563739|ref|YP_628055.1| adenine-specific DNA methylase [Helicobacter pylori HPAG1]
 gi|107837512|gb|ABF85381.1| adenine-specific DNA methylase [Helicobacter pylori HPAG1]
          Length = 367

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 43/67 (64%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           KL  T KPE LL RIL  STK  D++ D F GSGT+ AVA K++R +IG+EM + +  + 
Sbjct: 187 KLFDTPKPEVLLQRILEISTKENDLVCDFFAGSGTTCAVAHKMKRKYIGVEMGEHFERVI 246

Query: 262 TKRIASV 268
             R+  V
Sbjct: 247 LPRLKKV 253


>gi|116486891|emb|CAH64689.1| DNA methylase [Wolbachia endosymbiont of Drosophila simulans]
          Length = 409

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 101/233 (43%), Gaps = 37/233 (15%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           L  K  D+   DPPYN+       R D  +++   D  +K+  F  YD         C  
Sbjct: 185 LDDKMADITVCDPPYNVAYGDSQEREDKKILN--DDQGEKYELF-LYDI--------CSH 233

Query: 95  VLK-PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNAHETL 152
           VL    G +++  S   +  +  + +         I+W K++      GR  +Q  +ET+
Sbjct: 234 VLAYTKGAIYICASSSELATLQKVFEEAGGRWSTFIIWAKNHFT---LGRSDYQRQYETI 290

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEA 211
           ++   +   + +              + +SD W     + +          LHPT KP  
Sbjct: 291 LYGWKNGNKREWHGG-----------RNQSDLWFYDKPTYN---------SLHPTMKPVE 330

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           L+ R +V+S++PGDI+LDPF GSG++    ++  R    IE+   ++D+  KR
Sbjct: 331 LMERAIVNSSRPGDIVLDPFSGSGSTLIACERTGRICRTIELDPTFVDVTIKR 383


>gi|329121578|ref|ZP_08250199.1| methyltransferase [Dialister micraerophilus DSM 19965]
 gi|327468733|gb|EGF14210.1| methyltransferase [Dialister micraerophilus DSM 19965]
          Length = 380

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/74 (52%), Positives = 49/74 (66%), Gaps = 3/74 (4%)

Query: 197 NKDGEK-LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           NK+G K     QKPE L+  IL+SSTK  DI+LD   GSGT+ AVA K+ R +IGIE + 
Sbjct: 185 NKEGIKGFGEGQKPERLIKDILLSSTKENDIVLDFNLGSGTTAAVAHKMGRRYIGIE-QM 243

Query: 256 DYI-DIATKRIASV 268
           DYI DI  +R+  V
Sbjct: 244 DYIKDITVERLKKV 257


>gi|150016508|ref|YP_001308762.1| DNA methylase N-4/N-6 domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149902973|gb|ABR33806.1| DNA methylase N-4/N-6 domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 410

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 110/255 (43%), Gaps = 46/255 (18%)

Query: 20  KDKIIKGNSI--SVLEKL-PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K++++ G+S     +EKL   +   L+F DPPYN+   G       +  D +T   D  S
Sbjct: 168 KNRLMCGDSTVKEDIEKLINGQKAKLVFTDPPYNVNYEG-------ATADKLTIENDNMS 220

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGS------YHNIFR-IGTMLQNLNFWILNDI 129
             E Y+  ++ +       ++    ++V  +      +   FR  G  L     W+ N  
Sbjct: 221 QDEFYEFLSKVFNNYYEN-MEEGAPIYVCHADSEGENFRRTFREAGIKLAQCIIWVKNAF 279

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
           V  + +         +Q  HE +++     KA  +           +D    + W IP  
Sbjct: 280 VMGRQD---------YQWKHEPILYGWKEGKAHYFV----------DDRTQDTVWEIP-- 318

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
              +  RN +    HPT KP AL +R + +S+KP D+++D F GSG++   A +L R   
Sbjct: 319 ---KPTRNAE----HPTMKPLALCARAIKNSSKPNDLVIDLFGGSGSTLMAATELNRVCY 371

Query: 250 GIEMKQDYIDIATKR 264
            +E+ + Y D+   R
Sbjct: 372 TMEVDKKYADVIVLR 386


>gi|261840081|gb|ACX99846.1| hypothetical protein HPKB_1299 [Helicobacter pylori 52]
          Length = 378

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 43/58 (74%), Gaps = 1/58 (1%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           T KPEAL+ RIL  ST+  D++LD F GSGT+ AVA K++R +IGIE + DYI+  TK
Sbjct: 196 TPKPEALIQRILEISTQENDLVLDFFAGSGTTCAVAHKMKRRYIGIE-QMDYIETITK 252


>gi|119944476|ref|YP_942156.1| DNA methylase N-4/N-6 domain-containing protein [Psychromonas
           ingrahamii 37]
 gi|119863080|gb|ABM02557.1| DNA methylase N-4/N-6 domain protein [Psychromonas ingrahamii 37]
          Length = 220

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 104/236 (44%), Gaps = 33/236 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVD-AVTDSWDKFSSFE 79
           ++ K ++++ L  L  +SVDL+  DPPY +L+ + ++       V  A ++ W    S +
Sbjct: 2   QVYKDDAVNWLSTLADESVDLLITDPPYESLEKHRKIGTTTRLKVSKASSNEWFGIFSND 61

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            +++     L    RVLK N   ++      +F I  + + + F     I+W K   +  
Sbjct: 62  RFESL----LTEIYRVLKKNSHFYLFCDQETMFVIKPIAEKVGFKFWKPIIWDK---VCI 114

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
             G  ++  HE +++     K             A  D+                L  K 
Sbjct: 115 GMGYHYRARHEYILFFEKGKKKLN--------NLATPDI----------------LEYKR 150

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
             + +PT+KP  L+  ++  S+  G++++DPFFGSG +   A+ L R + G ++ +
Sbjct: 151 VFRGYPTEKPVPLMETLIAQSSVKGELVIDPFFGSGATLVAAQNLERRYSGCDLSE 206


>gi|315453000|ref|YP_004073270.1| DNA modification methyltransferase [Helicobacter felis ATCC 49179]
 gi|315132052|emb|CBY82680.1| DNA modification methyltransferase,XbaI methylase [Helicobacter
           felis ATCC 49179]
          Length = 271

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 50/83 (60%), Gaps = 7/83 (8%)

Query: 184 WLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           W IP       L  K  E++ +PTQKP  LL R++  ST   DIILDPF GSGT+   AK
Sbjct: 79  WEIPF------LNPKAKERVGYPTQKPIELLERLIQISTDENDIILDPFCGSGTTLVSAK 132

Query: 243 KLRRSFIGIEMKQDYIDIATKRI 265
            L R +IGI++ Q+ I +  +R+
Sbjct: 133 LLHREYIGIDISQEAIHLTQQRL 155


>gi|325979236|ref|YP_004288952.1| DNA methylase [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
 gi|325179164|emb|CBZ49208.1| DNA methylase [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
          Length = 424

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 104/241 (43%), Gaps = 33/241 (13%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQ----LYRPDHSLVDAVTDSW--DKFSSFEAYDAFTRAW 88
           L  + +DL   DPPYN+   G+    L  P+ +L D    ++  D F + + Y       
Sbjct: 180 LAGQPIDLYVTDPPYNVAYEGKTKAALTIPNDNLDDQAFQTFLVDAFHNVDQY------- 232

Query: 89  LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQN 147
                  LK  G  ++  +        T LQ + +     ++W K + +    GR+ +Q 
Sbjct: 233 -------LKAGGVFYIWHADKERLAFSTALQQVGWLEKQALIWVKDSFV---LGRQDYQW 282

Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW----LIPICSGSE-----RLRNK 198
            HE  ++   S  +  +  ++         ++ +S      LI     ++     R+   
Sbjct: 283 QHEPCLYGWKSGASHYFVSDFSQSTILESQLETKSKQELIALIKTYQANQPTSILRVNRP 342

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
              + HPT KP ALL R + SS++ GD +LD F GSG++    ++L R    +E++  Y+
Sbjct: 343 TKNEDHPTMKPIALLERFIRSSSRRGDCVLDTFAGSGSTLLACERLGRKSYSMELEPKYV 402

Query: 259 D 259
           +
Sbjct: 403 E 403


>gi|257462692|ref|ZP_05627101.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
           D12]
          Length = 260

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 54/83 (65%), Gaps = 2/83 (2%)

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           E+ +  + EK+HPTQKP+ +L +++   T  GD+++DP  GSG++   AK L+R+  G E
Sbjct: 175 EKDKKGEVEKIHPTQKPQRVLKKLIEIFTDEGDVVIDPVAGSGSTLRAAKDLKRNSYGFE 234

Query: 253 MKQDYIDIATKRIASVQPLGNIE 275
           +K+D   +A +++  + P  ++E
Sbjct: 235 IKKDMYQLALEKV--INPQKDVE 255


>gi|161525447|ref|YP_001580459.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           multivorans ATCC 17616]
 gi|189349817|ref|YP_001945445.1| putative DNA methylase [Burkholderia multivorans ATCC 17616]
 gi|160342876|gb|ABX15962.1| DNA methylase N-4/N-6 domain protein [Burkholderia multivorans ATCC
           17616]
 gi|189333839|dbj|BAG42909.1| putative DNA methylase [Burkholderia multivorans ATCC 17616]
          Length = 421

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 107/236 (45%), Gaps = 45/236 (19%)

Query: 38  KSVDLIFADPPYNL--------QLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
           +  D++F DPPYN+        +L G+ +RP   L DA+ +S+  F     YDA   A +
Sbjct: 192 ERADMVFTDPPYNVNYANSAKDKLRGK-HRP--ILNDALGESFYDF----LYDAL--ALI 242

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNA 148
            A  R     G ++V  S   +  +    + +       I+W K+       GR  +Q  
Sbjct: 243 NAHTR-----GAIYVAMSSSELDTLQAAFRAVGGHWSTFIIWAKNT---FTLGRADYQRQ 294

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
           +E +++  P    + +  + D       DV     W         +++      LHPT K
Sbjct: 295 YEPILYGWPEGAERYWCGDRD-----QGDV-----W---------QIKKPQKNDLHPTMK 335

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           P  L+ R + +S++PGD++LDPF GSGT+   A+K  R    IE+   Y D+  +R
Sbjct: 336 PVELVERAIRNSSRPGDVVLDPFGGSGTTLIAAEKAGRVARLIELDPKYTDVIVRR 391


>gi|238027159|ref|YP_002911390.1| DNA modification methylase [Burkholderia glumae BGR1]
 gi|237876353|gb|ACR28686.1| DNA modification methylase [Burkholderia glumae BGR1]
          Length = 355

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 40/57 (70%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           PEAL+   +++ ++PGD++ DPFFGSGT G VA++L R F+G E+  DY  +   R+
Sbjct: 289 PEALVEPCVLAGSRPGDVVFDPFFGSGTVGQVAQRLGRRFLGCELNPDYEPLQRDRL 345



 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
           +R+   LQ+  +++  DI+W K NPMP     R   AHE L   S   K++ Y F++ A+
Sbjct: 136 WRLAFALQDAGWYLRQDIIWAKPNPMPESVRDRCTKAHEYLFLLS---KSERYYFDHQAM 192

Query: 172 K 172
           +
Sbjct: 193 R 193


>gi|160894867|ref|ZP_02075641.1| hypothetical protein CLOL250_02417 [Clostridium sp. L2-50]
 gi|156863298|gb|EDO56729.1| hypothetical protein CLOL250_02417 [Clostridium sp. L2-50]
          Length = 506

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 52/83 (62%), Gaps = 5/83 (6%)

Query: 191 GSERLRNKDGEKLHP-----TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           GS +   K+ ++++P     T KPE L+ RIL  +TKPGDIILD F GSGT+ AVA K+ 
Sbjct: 282 GSTQDAKKEVKQINPEDPFATPKPEKLIERILEIATKPGDIILDSFLGSGTTIAVAHKMN 341

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R +IG+E+ +   +    R+  V
Sbjct: 342 RRWIGVEIGEQAYNQCKLRLDKV 364


>gi|154244502|ref|YP_001415460.1| DNA methylase N-4/N-6 domain-containing protein [Xanthobacter
           autotrophicus Py2]
 gi|154158587|gb|ABS65803.1| DNA methylase N-4/N-6 domain protein [Xanthobacter autotrophicus
           Py2]
          Length = 752

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 48/66 (72%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           + TQK E+LLSRI+ +S+KPGD+I D F GSGT+ AVA+KL R +IG ++ +  I  + K
Sbjct: 368 YETQKSESLLSRIIDASSKPGDLIADFFCGSGTTLAVAEKLGRKWIGADLGRFAIHTSRK 427

Query: 264 RIASVQ 269
           R+  VQ
Sbjct: 428 RMIGVQ 433


>gi|317060340|ref|ZP_07924825.1| conserved hypothetical protein [Fusobacterium sp. D12]
 gi|313686016|gb|EFS22851.1| conserved hypothetical protein [Fusobacterium sp. D12]
          Length = 255

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 54/83 (65%), Gaps = 2/83 (2%)

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           E+ +  + EK+HPTQKP+ +L +++   T  GD+++DP  GSG++   AK L+R+  G E
Sbjct: 170 EKDKKGEVEKIHPTQKPQRVLKKLIEIFTDEGDVVIDPVAGSGSTLRAAKDLKRNSYGFE 229

Query: 253 MKQDYIDIATKRIASVQPLGNIE 275
           +K+D   +A +++  + P  ++E
Sbjct: 230 IKKDMYQLALEKV--INPQKDVE 250


>gi|193084125|gb|ACF09792.1| DNA methylase N-4/N-6 [uncultured marine crenarchaeote KM3-153-F8]
          Length = 249

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 117/266 (43%), Gaps = 52/266 (19%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY-DAF 84
           G+ + ++  +P+ SV L    PPYN+ +                D  D   ++E Y D  
Sbjct: 14  GDVMELMSHIPSNSVHLAITSPPYNVGIE--------------YDKHDDKMNYEQYLDWL 59

Query: 85  TRAWLLACRRVLKPNGTLWV-IGS---------YHNIFRIGTMLQNLNFWILNDIVWRKS 134
           ++ W    +RVLK  G   + IG          +H+      +L+ L F    +I+W K 
Sbjct: 60  SKIWR-ETKRVLKDGGRFALNIGPTGIRDFKPLHHDS---ANILRKLGFIFRTEILWYKQ 115

Query: 135 NPMPNFRGRRFQ---NAH------ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD-- 183
             +       ++   N H        LI++  S K +G     D  K   ++    SD  
Sbjct: 116 TMLKRTAWGSWKSPSNPHIIPSWEYVLIFSKKSLKLEGDNTKADITK---QEFLNCSDGY 172

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           W I      E+ RNK     HP   PE L+ R++   +   + +LD F G+GT   VAKK
Sbjct: 173 WKI----APEKKRNK-----HPAPFPEELIYRLIKYYSFKDNTVLDMFGGTGTVAYVAKK 223

Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQ 269
            +R+FI I++ ++Y + A+ R+ ++Q
Sbjct: 224 NQRNFIHIDISKEYCETASDRLETLQ 249


>gi|268686802|ref|ZP_06153664.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae SK-93-1035]
 gi|268627086|gb|EEZ59486.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae SK-93-1035]
          Length = 605

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           +G+E+++N  GEK     KPE L+   +  +T   DI+LD   GSGT+ AVA K+ R +I
Sbjct: 389 NGTEQMKNLFGEKAFKNPKPEELIQDFITITTNENDIVLDYHLGSGTTAAVAHKMNRQYI 448

Query: 250 GIEMKQDYID-IATKRIASV 268
           GIE + DYI+ +A +R+  V
Sbjct: 449 GIE-QMDYIETLAVERMKKV 467


>gi|254509635|ref|ZP_05121702.1| DNA methylase N-4/N-6 domain protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221533346|gb|EEE36334.1| DNA methylase N-4/N-6 domain protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 481

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 6/108 (5%)

Query: 159 PKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRIL 217
           PK  G        ++  E VQ++  W     +   +L N+  E   +PTQKPE L+ RI+
Sbjct: 124 PKKVGGIPRLKKFESEFEGVQLQDLW-----TDINKLHNRSPEATGYPTQKPEKLIERII 178

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
             +T PGD++LD F GSGTS A A K  R ++  ++    I+   KR+
Sbjct: 179 ACTTDPGDLVLDFFVGSGTSAAAAYKTGRRYLAADINLGAIETTIKRL 226


>gi|15838888|ref|NP_299576.1| DNA methylase [Xylella fastidiosa 9a5c]
 gi|9107461|gb|AAF85096.1|AE004041_8 DNA methylase [Xylella fastidiosa 9a5c]
          Length = 156

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 77/178 (43%), Gaps = 32/178 (17%)

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           A++  WL  CRRV +P G L V   +  +  +   +Q+  +     +VW K+   P  R 
Sbjct: 2   AWSSQWLSECRRVTRPGGVLLVFTDWRMLPTLTDAVQSAGWAWQGIVVWDKT---PACRP 58

Query: 143 R--RFQNAHETLIWASPS---PKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           +  RF++  E ++WAS     PKA   T                     P+  G      
Sbjct: 59  QLGRFRSQAEFIVWASCGLMNPKAHPVT---------------------PV--GVFPTGT 95

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
              EK H   KP AL+   L+    P   ILDPF GSGT+G  A +    FIG+EM +
Sbjct: 96  APREKRHQVGKPLALMEH-LIKIVPPASTILDPFAGSGTTGVAALRAGHRFIGMEMSR 152


>gi|326784623|ref|YP_004324886.1| DNA adenine methylase [Prochlorococcus phage P-SSM7]
 gi|310004656|gb|ADO99048.1| DNA adenine methylase [Prochlorococcus phage P-SSM7]
          Length = 253

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 44/74 (59%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L+ K  + LHPTQKP  L+  ++ + T  G+ +LD   GSGT+G     L R+FIG+E  
Sbjct: 172 LKYKQEKGLHPTQKPVGLMEYMIKTYTNKGETVLDSTMGSGTTGLACVNLDRNFIGMESD 231

Query: 255 QDYIDIATKRIASV 268
           + Y  IA  RI S+
Sbjct: 232 EKYFKIAEDRIGSL 245


>gi|159030769|emb|CAO88447.1| cfrBIM [Microcystis aeruginosa PCC 7806]
          Length = 390

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 103/276 (37%), Gaps = 59/276 (21%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G+   +LE++PA+SVDLIF  PPY    N    RP++S  +       K           
Sbjct: 120 GDCSELLEEMPAESVDLIFTSPPY---FNA---RPEYSEFEEYESYLLKL---------- 163

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ----------------NLNFWILNDI 129
           R  +  C RVL   G  +VI     + R  +  Q                   +  ++DI
Sbjct: 164 RQVIRKCHRVLS-EGRFFVINISPVLLRRASRNQASKRIAVPFDLHRIFIEEGYDFIDDI 222

Query: 130 VWRKSNPM--PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI- 186
           +W K         RGRRF      L + +       Y   Y       +   +  DW I 
Sbjct: 223 IWLKPEGAGWATGRGRRFAADRNPLQYKTVP--VTEYVLVY------RKHTDLLIDWHIR 274

Query: 187 -----------PICSGSERLR----NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
                       I  G ER      N      HP   P  L  +++   +  GD++LDPF
Sbjct: 275 NHPAQEVVKASKIADGYERTNVWKINPVTNSKHPAAFPVELAEKVITYYSFKGDVVLDPF 334

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            GSGT G  A  L R F+  E   +YI++  K I  
Sbjct: 335 AGSGTVGLAAASLDRRFVLFESNFNYIELIRKLITE 370


>gi|255020319|ref|ZP_05292387.1| DNA methylase [Acidithiobacillus caldus ATCC 51756]
 gi|254970239|gb|EET27733.1| DNA methylase [Acidithiobacillus caldus ATCC 51756]
          Length = 428

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 106/237 (44%), Gaps = 45/237 (18%)

Query: 37  AKSVDLIFADPPYNL--------QLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
            +  D++F DPPYN+        +L G+ +RP   L DA+ + +  F     YDA +   
Sbjct: 191 GERADMVFTDPPYNVNYANSAKDKLRGK-HRP--ILNDALGEGFYDF----LYDALS--L 241

Query: 89  LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQN 147
           L+A  R     G ++V  S   +  +    +         I+W K+       GR  +Q 
Sbjct: 242 LVAHTR-----GAIYVAMSSSELDTLQAAFRTAGGHWSTFIIWAKNT---FTLGRSDYQR 293

Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
            +E +++  P    + +  + D       DV     W         +++      LHPT 
Sbjct: 294 QYEPILYGWPEGGERHWCGDRD-----QGDV-----W---------QIKKPAKNDLHPTM 334

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           KP  L+ R + +S++PGD++LDPF GSGT+   A+K  R    IE+   Y D+  +R
Sbjct: 335 KPVELVERAIRNSSRPGDVVLDPFGGSGTTMIAAEKAGRVARLIELDPKYADVIVRR 391


>gi|13488060|ref|NP_085633.1| DNA methyltransferase [Mesorhizobium loti MAFF303099]
 gi|14027882|dbj|BAB54474.1| DNA methyltransferase [Mesorhizobium loti MAFF303099]
          Length = 614

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 195 LRNKDGEKLH-PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           L N+  E+LH PTQKP +LL RIL SS   G+++LDPF G GT+ A A+   R +IGI++
Sbjct: 329 LHNRAAERLHYPTQKPVSLLDRILRSSANVGEVVLDPFCGCGTTIAAAQLAGRQWIGIDV 388

Query: 254 KQDYIDIATKRIASV 268
               I +   R+A +
Sbjct: 389 AYHAIRVIEDRLADM 403



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 86/180 (47%), Gaps = 45/180 (25%)

Query: 18  EWKDKIIKGNSISVL-EKLPAKSVDLIFADPPYNLQLN-GQLYR-PDH----SLVDAVTD 70
           E K+++  G+++++L E++  +SVDL++ DPP+N Q+N   L+R PD     + V+A  D
Sbjct: 40  EMKNQLWFGDNLTILREEIADESVDLVYLDPPFNSQVNYNVLFRTPDEDAASAQVEAFRD 99

Query: 71  SW----------DKF--------------------SSFEAYDAFTRAWLLACRRVLKPNG 100
           +W          D+                     S   AY       L   RRVL+P G
Sbjct: 100 TWTWGPEAKWAFDEIMHTGGGVTPIVHALHAALGDSDMMAYLVMMAQRLHELRRVLRPTG 159

Query: 101 TLWV----IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
           +L++      S++    +  +    NF  LN+++W++++   +   RR+   H+ L++ S
Sbjct: 160 SLYLHCDPTASHYLKIILDAIFGPTNF--LNEVIWKRTSAHSS--ARRYGPIHDVLLFYS 215


>gi|195546627|ref|YP_002117655.1| p097 [Rhizobium phage 16-3]
 gi|102642580|gb|ABF71361.1| p097 [Rhizobium phage 16-3]
          Length = 223

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 68/147 (46%), Gaps = 9/147 (6%)

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPS---PKAKGYTFNYDALKAANEDVQMRSDWLIP 187
           W  S P         +N+ E +IW       P ++G+   +D  +  N  + M     I 
Sbjct: 53  WDSSTPTEAVIDYILENSDEQIIWGGNYFNLPPSQGFLI-WDKKQPENFSLAMCEMAWIS 111

Query: 188 ICSGSERLRNK--DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
               ++  R      +K HPTQKP  L+   L      G ++LDPF GSGT+G    K  
Sbjct: 112 RKWPAKMFRQSVLSYDKEHPTQKPVPLMQWCLGYLQTTG-VVLDPFMGSGTTGVACVKAG 170

Query: 246 RSFIGIEMKQDYIDIATKRI--ASVQP 270
           RSFIGIE +  Y +IA +RI  A  QP
Sbjct: 171 RSFIGIEREPSYFEIACERIRKAQAQP 197


>gi|134298735|ref|YP_001112231.1| DNA methylase N-4/N-6 domain-containing protein [Desulfotomaculum
           reducens MI-1]
 gi|134051435|gb|ABO49406.1| DNA methylase N-4/N-6 domain protein [Desulfotomaculum reducens
           MI-1]
          Length = 505

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 41/63 (65%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T KPE L+ RI+  +T PGD+I+D F GSGT+ AVA K+ R +IG+EM +  +     R+
Sbjct: 303 TPKPERLIQRIIHIATNPGDLIMDSFLGSGTTAAVAHKMGRRYIGVEMGEQAVTHVVPRL 362

Query: 266 ASV 268
             V
Sbjct: 363 QKV 365


>gi|284112010|ref|ZP_06386548.1| type II DNA modification enzyme (methyltransferase) [Candidatus
           Poribacteria sp. WGA-A3]
 gi|283829725|gb|EFC34045.1| type II DNA modification enzyme (methyltransferase) [Candidatus
           Poribacteria sp. WGA-A3]
          Length = 457

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 44/62 (70%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +PTQKP ALL RI+ +S+ PGD++LDPF G  T+   A++L+R +IGI++  +   +A  
Sbjct: 298 YPTQKPIALLERIICASSNPGDMVLDPFCGCATTCIAAERLQRHWIGIDLSPESSKLAKL 357

Query: 264 RI 265
           R+
Sbjct: 358 RL 359


>gi|307638042|gb|ADN80492.1| type II DNA modification enzyme [Helicobacter pylori 908]
 gi|325996646|gb|ADZ52051.1| Type III restriction-modification system methylation subunit
           [Helicobacter pylori 2018]
 gi|325998235|gb|ADZ50443.1| Type III restriction-modification system methylation subunit
           [Helicobacter pylori 2017]
          Length = 243

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 5/84 (5%)

Query: 190 SGSERLR-----NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
            G E L+     N+  E +    KPEALL RIL  ST+  D++ D F GSGT+ AVA KL
Sbjct: 46  QGKEELKKLFDINEGRETIFNNPKPEALLQRILEISTQENDLVCDFFAGSGTTCAVAHKL 105

Query: 245 RRSFIGIEMKQDYIDIATKRIASV 268
           +R +IG+EM + +  +   R+  V
Sbjct: 106 KRKYIGVEMGEHFESVILPRLKKV 129


>gi|118576608|ref|YP_876351.1| DNA modification methylase [Cenarchaeum symbiosum A]
 gi|118195129|gb|ABK78047.1| DNA modification methylase [Cenarchaeum symbiosum A]
          Length = 359

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 104/265 (39%), Gaps = 54/265 (20%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ----LNGQLYR------PDHSLVDAVT 69
           K ++   +S+    KL   SVDL+  DPPY +        Q+ R       D  +     
Sbjct: 126 KHRMSCADSMVECAKLKDNSVDLLLTDPPYGISSPYATERQIPRRVRKNGGDFIMPKGEF 185

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI--GSYHNIFRIGTMLQNLNFWILN 127
             WD       +D+   AW     +V+ P    W +   ++  I     +L    F  +N
Sbjct: 186 GEWD-------HDSDPAAWT----KVVLPKIKGWAVIFCAHVQIKDYTEILSGNGFVAVN 234

Query: 128 DIVWRKSNPMP-NFRGRRFQNAHETLIWASPSPKAKGYT----FNYDALKAANEDVQMRS 182
            +VW K+NP+P N + +        ++   PS K  G +    F Y +   A        
Sbjct: 235 ALVWHKTNPVPFNHKFKMLSAWESAVMGKRPSTKFNGKSVHNVFTYKSPSPA-------- 286

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
                             +++HPTQKP  L+  ++   +  GD++LDPF GS T+   A 
Sbjct: 287 ------------------QRIHPTQKPLGLMEELIQLMSDKGDLVLDPFGGSATTMIAAM 328

Query: 243 KLRRSFIGIEMKQDYIDIATKRIAS 267
              R  I  E       +A++R+ S
Sbjct: 329 NQNRKSITYENDPKMYKLASQRVKS 353


>gi|227821729|ref|YP_002825699.1| modification methylase EcaI [Sinorhizobium fredii NGR234]
 gi|227340728|gb|ACP24946.1| modification methylase EcaI [Sinorhizobium fredii NGR234]
          Length = 568

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 56/85 (65%), Gaps = 3/85 (3%)

Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           L ++  E+L +PTQKP  LL R++ + T  GD++LDPF G GT+ A A+K +R +IGI++
Sbjct: 289 LNSQARERLGYPTQKPVRLLDRLIKAMTDEGDVVLDPFCGCGTTVAAAQKSQRHWIGIDV 348

Query: 254 KQDYIDIATKRIASVQPLGNIELTV 278
               I +  +R+A++  +G  E T+
Sbjct: 349 AYHAIKVIEERLAAL--MGGTEYTL 371


>gi|309751295|gb|ADO81279.1| Type III restriction-modification system methylase (M.HindVIP)
           [Haemophilus influenzae R2866]
          Length = 667

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 8/89 (8%)

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
             D++  + S S   ++ DG      QKPEAL+ RI+  +T   DI+LD   GSGT+ AV
Sbjct: 448 EDDFVQIVSSTSSERQDFDG------QKPEALIKRIIELTTNESDIVLDYHLGSGTTAAV 501

Query: 241 AKKLRRSFIGIEMKQDYID-IATKRIASV 268
           A K+ R +IGIE + DYI+ +A +R+  V
Sbjct: 502 AHKMNRQYIGIE-QMDYIETLAVERLKKV 529


>gi|145638132|ref|ZP_01793742.1| putative type III restriction/modification system modification
           methylase [Haemophilus influenzae PittII]
 gi|145272461|gb|EDK12368.1| putative type III restriction/modification system modification
           methylase [Haemophilus influenzae PittII]
          Length = 396

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 8/89 (8%)

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
             D++  + S S   ++ DG      QKPEAL+ RI+  +T   DI+LD   GSGT+ AV
Sbjct: 177 EDDFVQIVSSTSSERQDFDG------QKPEALIKRIIELTTNESDIVLDYHLGSGTTAAV 230

Query: 241 AKKLRRSFIGIEMKQDYID-IATKRIASV 268
           A K+ R +IGIE + DYI+ +A +R+  V
Sbjct: 231 AHKMNRQYIGIE-QMDYIETLAVERLKKV 258


>gi|16081887|ref|NP_394290.1| hypothetical protein Ta0829 [Thermoplasma acidophilum DSM 1728]
 gi|10640106|emb|CAC11958.1| hypothetical protein [Thermoplasma acidophilum]
          Length = 309

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 115/275 (41%), Gaps = 44/275 (16%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
           I+  +N + E     I   S   ++++P  S+ L+   PPYN+   G+LY  D SL    
Sbjct: 44  IDFTENKVPEIALDRIFCKSSEKMDEIPDNSIHLMVTSPPYNV---GKLYDKDMSLA--- 97

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV----IGSYHNI----FRIGTMLQN 120
                     E  D  +  W     RVL P G   +    +G    I    F I  M++ 
Sbjct: 98  ----------EYRDFLSSVWK-EVYRVLVPGGRACINIANLGRKPYIPLHAFIIEDMIK- 145

Query: 121 LNFWILNDIVWRKSNPMPN---------FRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
           L F +  +++W K     +          +    +++HE ++  S     +G   N  + 
Sbjct: 146 LGFLMRGEVIWDKGATASSSVAWGTYLSAKNPVLRDSHEYILIFSKQTFTRGIKENMRST 205

Query: 172 KAANEDVQM-RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
            +  E ++  +S W     S +     + G   HP   P  L  R +   T   +++LDP
Sbjct: 206 MSKEEFIEYTKSVWSFGAESAT-----RIG---HPAPFPVELPKRCIKLYTFEEEVVLDP 257

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           F GSGT+   A  L R F+G ++  +Y+ +A KRI
Sbjct: 258 FIGSGTTAISALMLNRHFVGYDVDPEYVKLANKRI 292


>gi|308273677|emb|CBX30279.1| Putative type III restriction-modification system HindVIP enzyme
           mod [uncultured Desulfobacterium sp.]
          Length = 616

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 121/308 (39%), Gaps = 79/308 (25%)

Query: 23  IIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           IIKGN++  L  L  +    V LI+ DPP+N + +   Y              D FS   
Sbjct: 182 IIKGNNLLALHTLKKQFRGKVKLIYIDPPFNTERDSFTYN-------------DSFSH-S 227

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL----NFWILNDIVWRKSN 135
            +  F R  LLA    L  +G + V    +    +  +L  +    NF  +N+I+W K  
Sbjct: 228 TWLTFMRNRLLAAHEFLTKDGNIIVHIDNNESHYLKILLDEIFGRTNF--VNEIIWHKGR 285

Query: 136 P------------MPNFRGRRFQNAHETLI--WASP------------SPKAKGYTFNYD 169
                        MP      F  A E  I  W+ P                KG+ +   
Sbjct: 286 EGGSSRSHSASSSMPTEYQNIFVYAKEKSIRYWSLPLGPYKKSTIGGIDKDEKGWFYTRG 345

Query: 170 -----------ALKAA-----NEDVQMRSDWLIPICS-------------GSERLRNKDG 200
                      A KA      ++ + +    +I + +             G++ ++N   
Sbjct: 346 RMSRTPAEWELAEKAGLKTYVSDRIDLEKSEVIKLITASDAKYVALGDVWGNDFIKNT-K 404

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           E  + T KPE LL  I+ ++T+P DI+LD F GSGT+ AV  KL R  IGIE     ++I
Sbjct: 405 EADYDTSKPEGLLKIIIEAATQPKDIVLDFFLGSGTTAAVTIKLNRQCIGIEQLSGGMNI 464

Query: 261 ATKRIASV 268
              R+  V
Sbjct: 465 LLPRLKEV 472


>gi|333027663|ref|ZP_08455727.1| putative DNA (cytosine-5-)-methyltransferase [Streptomyces sp.
           Tu6071]
 gi|332747515|gb|EGJ77956.1| putative DNA (cytosine-5-)-methyltransferase [Streptomyces sp.
           Tu6071]
          Length = 248

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 106/256 (41%), Gaps = 41/256 (16%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNL------QLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +G+++++L+ LP +SV  +  DPPYN       +  G+  R  +   ++  D     ++F
Sbjct: 7   RGDALTILKTLPDESVHAVITDPPYNSGGRTSSERTGRTARAKYVTSNSAHD----LATF 62

Query: 79  -------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
                   +Y ++    L    R    +    V   +         LQ   +     I W
Sbjct: 63  PGENRDQRSYRSWLTELLTEAYRAATEHSVAMVFSDWRQEPTTTDALQMAGWTWSGTISW 122

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
            K    P   G +     E + W                +K A ++ +   D  +P    
Sbjct: 123 IKPASRPRKGGPKQDT--EFVTWG---------------VKGALDNTR---DLYLPGHYI 162

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           + + R    +++H TQKP  ++ R LV     G  +LDPF GSG +G  A +  R+F+G+
Sbjct: 163 ASQPRK---DRVHITQKPVEIM-RQLVKVCPEGGTVLDPFTGSGATGVAALREGRNFLGV 218

Query: 252 EMKQDYIDIATKRIAS 267
           E+   Y DIA +R+ +
Sbjct: 219 ELSTHYADIAERRLCA 234


>gi|134095382|ref|YP_001100457.1| putative site-specific DNA-methyltransferase (adenine-specific)
           [Herminiimonas arsenicoxydans]
 gi|133739285|emb|CAL62334.1| Putative site-specific DNA-methyltransferase (adenine-specific)
           [Herminiimonas arsenicoxydans]
          Length = 674

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 43/65 (66%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +PTQKP  LL RI+ ++T PGD++ D F GSGT+   A KL R FIG ++    I I+ K
Sbjct: 339 YPTQKPIKLLERIITATTDPGDLVFDGFVGSGTTLVAAAKLGRRFIGSDINLAAIQISAK 398

Query: 264 RIASV 268
           R+ ++
Sbjct: 399 RLQTL 403


>gi|309803500|ref|ZP_07697593.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
           11V1-d]
 gi|308164384|gb|EFO66638.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
           11V1-d]
          Length = 520

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 47/70 (67%), Gaps = 2/70 (2%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI- 258
           G+K+  T KPE+LL RI+   +   DIILD F GSGT+ AVA K+ R +IG+E + DYI 
Sbjct: 329 GKKIFDTPKPESLLQRIIHIGSNEDDIILDFFTGSGTTAAVAHKMGRRYIGVE-QMDYIQ 387

Query: 259 DIATKRIASV 268
           DI  +R+  V
Sbjct: 388 DITVERLKKV 397


>gi|226324847|ref|ZP_03800365.1| hypothetical protein COPCOM_02634 [Coprococcus comes ATCC 27758]
 gi|225207295|gb|EEG89649.1| hypothetical protein COPCOM_02634 [Coprococcus comes ATCC 27758]
          Length = 287

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 50/88 (56%)

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           KD  K+HPTQKP  LL +++ + T PGD+++DP  GSG++   A+ L RS  G E+ +++
Sbjct: 199 KDIPKIHPTQKPVRLLEQLIQTFTDPGDVVIDPCCGSGSTLRAARNLGRSAFGFEIDRNF 258

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTE 285
              A   +  V+    + +T   G  T 
Sbjct: 259 YARAKNEMLKVEKEQQMNITDFIGGNTH 286


>gi|207723082|ref|YP_002253489.1| dna methylase protein [Ralstonia solanacearum IPO1609]
 gi|206588274|emb|CAQ18974.1| putative dna methylase protein [Ralstonia solanacearum IPO1609]
          Length = 268

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 109/252 (43%), Gaps = 33/252 (13%)

Query: 7   LAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           LA+++   S+ +  ++  K + + +L K P ++V  +F DP Y     G + + D+    
Sbjct: 48  LALDKLPKSLKKLANQKTKMDGLKLLSKFPTETVPAVFFDPQYR----GVMDKLDYGNEG 103

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNLNFWI 125
           A        S     D   R +++   RVL P+G L + +  +H +  I    +  +   
Sbjct: 104 ARQKGRAALSQMS--DETIRNFVVEIDRVLCPSGHLLLWVDKFHLVEGIDAWTEGTSLET 161

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK-AKGYTFNYDALKAANEDVQMRSDW 184
           ++ + W K      +R RR     E LI     PK AKG+  ++D       DV     W
Sbjct: 162 VDLVTWDKGRIGMGYRTRR---KSEYLIILQKLPKKAKGHWTSHDI-----PDV-----W 208

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           L  +             + HP  KPE L S I+ +  KPGD ++DP  G  +    A   
Sbjct: 209 LEKVG------------RHHPHAKPEQLQSAIINAIVKPGDFVVDPASGGFSVMRSAINA 256

Query: 245 RRSFIGIEMKQD 256
            R+FIG ++K D
Sbjct: 257 GRNFIGCDLKVD 268


>gi|167630911|ref|YP_001681410.1| DNA methylase, family protein [Heliobacterium modesticaldum Ice1]
 gi|167593651|gb|ABZ85399.1| DNA methylase, family protein [Heliobacterium modesticaldum Ice1]
          Length = 417

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 104/251 (41%), Gaps = 28/251 (11%)

Query: 20  KDKIIKGNS---ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G+S   + V + +  K V  +F DPP+N+        P       + D      
Sbjct: 168 RHRLMCGDSALLLDVQKLMDGKKVRFVFTDPPWNVDYGSDTRHPSWKPRQILNDR----M 223

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           S E + AF        R V +     +V+ S      +  +L+   +   + I+W+K + 
Sbjct: 224 STEEFGAFLSRAFNCMREVSEAGCMTYVVMSAQEWGSLMNVLREAGYHWSSTIIWKKDSL 283

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           + +   R+  +     IW         Y +         +D +    W IP    SE   
Sbjct: 284 VLS---RKDYHTQYEPIW---------YGWLEGTRLCPLKDRKQSDVWEIPRPKVSEE-- 329

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                  HPT KP +L+++ +++S+  GD+ LD F GSGT+   A++  R    +E+   
Sbjct: 330 -------HPTMKPVSLVAKAMLNSSHAGDLALDLFGGSGTTMIAAEQTGRVCFMMELDPK 382

Query: 257 YIDIATKRIAS 267
           Y D+  KR  S
Sbjct: 383 YCDVIAKRYVS 393


>gi|296119315|ref|ZP_06837883.1| adenine specific DNA methylase Mod [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295967707|gb|EFG80964.1| adenine specific DNA methylase Mod [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 639

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 53/87 (60%), Gaps = 7/87 (8%)

Query: 182 SDWLIPICSGSERLR-NKDGEKLHPTQ-----KPEALLSRILVSSTKPGDIILDPFFGSG 235
           SD+L  + SGS+  + N+  ++L         KPE LL  IL  ST+PGD++LD F GSG
Sbjct: 423 SDFLKSLLSGSKNAKGNQQIDELFSRDEFSYAKPEELLEAILTVSTQPGDLVLDFFLGSG 482

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           T+ AVA K+ R +IG+E + DY    T
Sbjct: 483 TTAAVAHKMGRRYIGVE-QMDYTSTVT 508


>gi|326802743|ref|YP_004320561.1| DNA (cytosine-5-)-methyltransferase [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651281|gb|AEA01464.1| DNA (cytosine-5-)-methyltransferase [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 371

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 45/66 (68%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +PTQKPE LLSRI+ +ST  GD+I+D F GSGTS AVA+KL R +I  ++ +       K
Sbjct: 299 YPTQKPEELLSRIIKASTNEGDLIMDFFGGSGTSMAVAEKLGRRWITCDLGKLAFLTMQK 358

Query: 264 RIASVQ 269
           RI  +Q
Sbjct: 359 RILQIQ 364


>gi|331266269|ref|YP_004325899.1| putative type III restriction/modification system modification
           methylase [Streptococcus oralis Uo5]
 gi|326682941|emb|CBZ00558.1| putative type III restriction/modification system modification
           methylase [Streptococcus oralis Uo5]
          Length = 663

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 49/75 (65%), Gaps = 2/75 (2%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           + N+ G +L   +KPE LL RI+  STK  D++LD   GSGT+ AVA K+ R +IGIE +
Sbjct: 467 IANEGGVQLPNGKKPEKLLQRIIKMSTKESDVVLDYHLGSGTTAAVAHKMNRQYIGIE-Q 525

Query: 255 QDYI-DIATKRIASV 268
            DYI ++   R+ +V
Sbjct: 526 MDYIEELVVNRLKNV 540


>gi|308272428|emb|CBX29032.1| hypothetical protein N47_J00130 [uncultured Desulfobacterium sp.]
          Length = 600

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 125/281 (44%), Gaps = 64/281 (22%)

Query: 18  EWKDKIIKGNSISVLEKLPAKS--VDLIFADPPY--------NLQL-NG---QLYRPDHS 63
           ++++ +I+G+ +S    L  ++  VDL+  DPP+         + L NG   ++   D++
Sbjct: 60  DFRNLLIQGDCLSACAYLKQQNIKVDLVCIDPPFASGASYAKKIYLRNGVVSEVEAQDNT 119

Query: 64  LVDAVT--DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-----WVIGSYHNIFRIGT 116
           + + +   D W K    E +  +    LLA + V+   G++     W IG Y  I     
Sbjct: 120 IGEEIMYGDIWQK----EDFLNWLYERLLAIKDVMSETGSIYVHLDWHIGHYVKILLDEV 175

Query: 117 MLQNLNFWILNDIVWRKSN-PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
             + L     N+I+W  S   +P     +  N H+ + W S SP    Y   Y   K+ +
Sbjct: 176 FGEEL---FKNEIIWCYSGGAVP---VDKLPNKHDVIYWYSKSPDVWTYNPIY---KSYS 226

Query: 176 EDVQMR-------------------SDW---LIPICSGSERLRNKDGEK-LHPTQKPEAL 212
           E  Q R                   +DW   L P+ S +      D EK  + TQKPE+L
Sbjct: 227 EKTQQRGRTAVKGNNAGLREEGTPITDWWTDLTPVTSPT------DPEKQYYVTQKPESL 280

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           L RI+  S++ G I+ D F GSGT+   A+  +R FI  ++
Sbjct: 281 LKRIINLSSEAGMIVADFFSGSGTTAKSAEDEKRKFIACDI 321


>gi|74317509|ref|YP_315249.1| adenine specific DNA-methyltransferase [Thiobacillus denitrificans
           ATCC 25259]
 gi|74057004|gb|AAZ97444.1| adenine specific DNA-methyltransferase [Thiobacillus denitrificans
           ATCC 25259]
          Length = 779

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 50/77 (64%), Gaps = 1/77 (1%)

Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           R+     E+L +PTQKPEALL RI+ +S+  GD++ D F GSGT+ AVA+KL R +I  +
Sbjct: 362 RISPTSSERLDYPTQKPEALLERIIKASSNEGDLVADFFCGSGTTAAVAEKLGRKWIATD 421

Query: 253 MKQDYIDIATKRIASVQ 269
           + +  +    KR+  VQ
Sbjct: 422 LGKFGVHTTRKRMIGVQ 438


>gi|229815289|ref|ZP_04445624.1| hypothetical protein COLINT_02335 [Collinsella intestinalis DSM
           13280]
 gi|229809069|gb|EEP44836.1| hypothetical protein COLINT_02335 [Collinsella intestinalis DSM
           13280]
          Length = 408

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 103/270 (38%), Gaps = 68/270 (25%)

Query: 22  KIIKGNSISV--LEKLPAKS-VDLIFADPPYNLQLNGQLYRPD-----HSLVDAVT---D 70
           +I+ G+S     +EKL      DL+  DPPYN+ L GQ  RP      H   D +    D
Sbjct: 167 RIMCGDSTCREDVEKLGGGGFCDLLLTDPPYNVAL-GQHMRPSELKQLHRRTDGLVIEND 225

Query: 71  SWDKFSSFEAY--DAFTRAWLLACRRVLKPNGTLWV---IGSYHNIFRI----GTMLQNL 121
           SWD   +F A+   AF  A       VL P    ++        N  R     G  ++  
Sbjct: 226 SWDDDDAFVAFLKSAFDNA-----MEVLNPGAAFYIWHADSQRMNFLRACELSGMTVREC 280

Query: 122 NFWILN-------DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
             W  N       D  WR     P   G +   AH    W S   ++    F+  ++ A 
Sbjct: 281 LVWAKNTFALGRQDYQWRHE---PCLYGWKDGAAHS---WYSDRKQSTVLEFDKPSVNAE 334

Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
                                        HPT KP  L++ ++ +STK GD +LD F GS
Sbjct: 335 -----------------------------HPTMKPVGLMAYLIRNSTKEGDTVLDVFGGS 365

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           G++    + + R  + +E+   Y D+   R
Sbjct: 366 GSTLMACEGMGRRCLSMELDPHYCDVIITR 395


>gi|86211167|gb|ABC87269.1| M.NotI DNA methyltransferase [Nocardia otitidiscaviarum]
          Length = 353

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 116/306 (37%), Gaps = 83/306 (27%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW----DKFSS 77
           ++ +G++  +   L  +S+DLI   PPY      + Y  DHS  + V D W    +  + 
Sbjct: 55  EVRQGDAYDLASGLDPQSIDLIITSPPY---WGMRTYGHDHS--EDVLDEWVAEGNHATD 109

Query: 78  FEAYDAFTR-----------AWLLA--------CRRVLKPNGTLWV-------------- 104
              Y+ +              W ++         R  LK  G++WV              
Sbjct: 110 VPPYEWYREHGGLLGMEPIPEWFISHLVEIFERLRPALKLGGSVWVNLGDTYFARWSSIR 169

Query: 105 ------------------IGSYHN-------IFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                             +G Y           R    +Q+  + + ND++W K N  P 
Sbjct: 170 SDGRQGLGDNPRTRRKTPMGGYRQEKQLMLIPSRFAIAMQDKRWILRNDLIWHKPNVAPR 229

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYD--ALKAANEDVQMRSDWLIPICSGSERLRN 197
               R + AHE        PK     + YD  A++    DV       + + SGS     
Sbjct: 230 PEKDRLRLAHEHFFHFVLRPKEGRAKYYYDTSAVEEGTRDVVT-----VNVRSGS----- 279

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
            DG   H    P  L+   + SS+  G ++LDPF G+G +  VA +L RS IG E+ +++
Sbjct: 280 -DG---HSATFPPDLIRPRIESSSPVGGLVLDPFAGTGRALGVAAELGRSAIGFELSEEF 335

Query: 258 IDIATK 263
              AT+
Sbjct: 336 TQAATR 341


>gi|219883014|ref|YP_002478178.1| DNA methylase N-4/N-6 domain protein [Arthrobacter chlorophenolicus
           A6]
 gi|219862020|gb|ACL42361.1| DNA methylase N-4/N-6 domain protein [Arthrobacter chlorophenolicus
           A6]
          Length = 374

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 46/64 (71%), Gaps = 1/64 (1%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI-DIATKR 264
           T KPEALL R++ ++T+PGD +LD F GSGT+ AVA+KL R++IG+E+  + I D    R
Sbjct: 281 TPKPEALLERLIAAATEPGDTVLDCFAGSGTTLAVAQKLGRNWIGVELNAETIADYIAPR 340

Query: 265 IASV 268
           I  +
Sbjct: 341 IDGI 344


>gi|297374640|emb|CBL42927.1| DNA methylase N-4/N-6 domain protein [Candidatus Magnetobacterium
           bavaricum]
          Length = 262

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 52/77 (67%), Gaps = 1/77 (1%)

Query: 193 ERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           ++L +   E+L +PTQKP ALL RI+++S+  GD++LDPF G GT+   A+KL R +IGI
Sbjct: 14  DKLNSSAKERLGYPTQKPIALLERIIMASSNEGDLVLDPFCGCGTTVTAAQKLNRQWIGI 73

Query: 252 EMKQDYIDIATKRIASV 268
           ++     ++   R+A +
Sbjct: 74  DITHLATNLIKLRLADM 90


>gi|237737303|ref|ZP_04567784.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium
           mortiferum ATCC 9817]
 gi|229421165|gb|EEO36212.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium
           mortiferum ATCC 9817]
          Length = 253

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 115/280 (41%), Gaps = 57/280 (20%)

Query: 15  SIFEWKD-KIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
           +I E K+ ++  GN + +++KL      VDLI  DPPY                    + 
Sbjct: 3   AILEIKNIQLYNGNCLEIMDKLIEAGIKVDLIITDPPY----------------QKTKNK 46

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           WD    F+  D + R      +++ K N  + + G    IF    +L N   +  + ++W
Sbjct: 47  WDYVIPFD--DMWNR-----LKKLRKDNTPIILFG--QGIFSAKLILSNEEEYRYS-LIW 96

Query: 132 RKSNP-----------------------MPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
            K +P                       +P +  ++F+         + +PK      NY
Sbjct: 97  NKEHPSGFLNANKMPLSSHEDILVFYKKLPIYNPQKFKGKQNNSTGNTIAPKINN---NY 153

Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
           +      ++ +   D   P    + + +      +HPTQKP  LL  ++ + +    ++L
Sbjct: 154 NNF-IQEDNSKKYGDMKFPRSILNFK-KPHPSVMVHPTQKPVELLEYLIKTYSNEKSLVL 211

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           D   GSG++G   K L R+FIGIE+ +DY  +A  R+  V
Sbjct: 212 DFTMGSGSTGIACKNLNRNFIGIEIDKDYFKLAINRLEVV 251


>gi|332522901|ref|ZP_08399153.1| DNA (cytosine-5-)-methyltransferase [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332314165|gb|EGJ27150.1| DNA (cytosine-5-)-methyltransferase [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 418

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 121/269 (44%), Gaps = 39/269 (14%)

Query: 20  KDKIIKGNSISVL---EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K ++I G+S       + L  K  +L+  DPPYN+ +     +    L D ++D    F 
Sbjct: 171 KHRVICGDSTKAQTYDQLLGDKKANLVVTDPPYNVDVEETAGK---ILNDNMSDG--DFY 225

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            F  YD FT+         ++ + +++V  +           ++  F++    +W+K++ 
Sbjct: 226 QF-LYDMFTQV-----ESHMEADASIYVFHADTEGLNFRKAFKDAGFYLSGCCIWKKNSL 279

Query: 137 MPNFRGRR-FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           +    GR  +Q  HE  ++     K +   F+         D +  + W        E  
Sbjct: 280 V---LGRSPYQWQHEPCLFGW-RQKGRHQWFS---------DCKQTTIW--------EYD 318

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           R K   K HPT KP  L++  + +S+  G ++LDPF GSG++   A +  R   GIE+ +
Sbjct: 319 RPK-SSKDHPTMKPIQLMAYPIQNSSMRGTLVLDPFLGSGSTLMAADQTGRICYGIELDE 377

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRT 284
            ++D+  KR   ++  GN ++ VL   +T
Sbjct: 378 KFVDVIVKRY--MEATGNSDVKVLRNSQT 404


>gi|331088961|ref|ZP_08337868.1| DNA methylase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330406413|gb|EGG85926.1| DNA methylase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 277

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 113/279 (40%), Gaps = 57/279 (20%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKF---- 75
           ++I   + + +L ++P   V LI  DPPY +       R  H+++   T   +++F    
Sbjct: 18  NQIYHTDCMELLAQIPDNYVSLILTDPPYGISYRNHFARQPHAVLTGDTGIDYERFARES 77

Query: 76  -------------SSFEAY----DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
                        + F+ Y    D   RA       ++   GT+  IG        G+  
Sbjct: 78  YRILRENSHAYFFTRFDCYPYHYDCLERAGFTVKNCLIVEKGTIGGIGDL-----TGSYA 132

Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRR-FQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
            N  + I               +GRR FQ  H TL+    + K +G  ++    ++    
Sbjct: 133 NNAEWIIFCQ------------KGRRTFQ--HTTLL---ENRKKEGMQYHAGRERSKKYK 175

Query: 178 VQMRSDWLIPICSGSERLR-------NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
            +  + W      G E  +        K  +  HPT K    LS ++  S+  G+++ D 
Sbjct: 176 TRFNACWF-----GEEYPKATYNSVWQKQHQIYHPTIKNVECLSWLIQISSLQGELVFDG 230

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           F G+G++   A + +R+++G E+ + Y +IA  RI  V+
Sbjct: 231 FMGTGSTALAAIQTQRAYLGAEIDKAYFEIAQNRIKEVE 269


>gi|94992621|ref|YP_600720.1| adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS2096]
 gi|94546129|gb|ABF36176.1| Adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS2096]
          Length = 283

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 113/279 (40%), Gaps = 57/279 (20%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKF---- 75
           ++I   + + +L ++P   V LI  DPPY +       R  H+++   T   +++F    
Sbjct: 24  NQIYHTDCMELLAQIPDNYVSLILTDPPYGISYRNHFARQPHAVLTGDTGIDYERFARES 83

Query: 76  -------------SSFEAY----DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
                        + F+ Y    D   RA       ++   GT+  IG        G+  
Sbjct: 84  YRILRENSHAYFFTRFDCYPYHYDCLERAGFTVKNCLIVEKGTIGGIGDL-----TGSYA 138

Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRR-FQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
            N  + I               +GRR FQ  H TL+    + K +G  ++    ++    
Sbjct: 139 NNAEWIIFCQ------------KGRRTFQ--HTTLL---ENRKKEGMQYHAGRERSKKYK 181

Query: 178 VQMRSDWLIPICSGSERLR-------NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
            +  + W      G E  +        K  +  HPT K    LS ++  S+  G+++ D 
Sbjct: 182 TRFNACWF-----GEEYPKATYNSVWQKQHQIYHPTIKNVECLSWLIQISSLQGELVFDG 236

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           F G+G++   A + +R+++G E+ + Y +IA  RI  V+
Sbjct: 237 FMGTGSTALAAIQTQRAYLGAEIDKAYFEIAQNRIKEVE 275


>gi|121596379|ref|YP_988275.1| DNA methylase N-4/N-6 domain-containing protein [Acidovorax sp.
           JS42]
 gi|120608459|gb|ABM44199.1| DNA methylase N-4/N-6 domain protein [Acidovorax sp. JS42]
          Length = 545

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 42/69 (60%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           GE    T KPE LL RIL  ++ PGD++LD F GSGT+ AVA K+ R +IGIEM +    
Sbjct: 298 GETPFGTPKPERLLQRILHIASNPGDLVLDSFLGSGTTAAVAHKMGRRWIGIEMGEHAAT 357

Query: 260 IATKRIASV 268
               R+  V
Sbjct: 358 HCLPRLQKV 366


>gi|119509284|ref|ZP_01628434.1| DNA methylase N-4/N-6 [Nodularia spumigena CCY9414]
 gi|119466126|gb|EAW47013.1| DNA methylase N-4/N-6 [Nodularia spumigena CCY9414]
          Length = 882

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 49/79 (62%)

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           +R   ++G K HP + P+AL   ++   T+PGD++LDPF GS T+G VA+ L R ++  E
Sbjct: 267 QRRCKEEGVKPHPARFPQALPEFVIGLCTEPGDLVLDPFAGSNTTGRVAETLDRRWLAFE 326

Query: 253 MKQDYIDIATKRIASVQPL 271
           + ++YI  +  R  +  PL
Sbjct: 327 LDENYIQTSQFRFENDAPL 345



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 94/234 (40%), Gaps = 55/234 (23%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           GNS++++ +LP +SVDLI   PP+ L     + + ++  VDA             Y  + 
Sbjct: 29  GNSLALMAELPNESVDLICTSPPFAL-----VRKKEYGNVDAC-----------EYIEWF 72

Query: 86  RAWLLACRRVLKPNGTLWVI--GSYHNIFRIGTMLQ--------------NLNFWILNDI 129
           + + +   R+LKP G+L V   G++H    + ++                 L F++  ++
Sbjct: 73  KKFAIQFYRILKPQGSLVVDIGGTWHKGVPVRSLYHFELVVELCKPKSKGGLGFYLAQEL 132

Query: 130 VWRKSNPMP------NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
            W     +P        R  R ++A  T+ W S  P            KA N+ V     
Sbjct: 133 FWYNPAKLPTPAEWVTVRRERVKDAVNTVWWLSKDPHP----------KANNKRV----- 177

Query: 184 WLIPICSGSER-LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
            L P     +  L+N    KL P+    +   +       P +II+D  FGS T
Sbjct: 178 -LRPYSDAMKNLLKNGYEAKLRPSGHDISTKFKNDRGGAIPPNIIIDSEFGSST 230


>gi|291166224|gb|EFE28270.1| DNA (cytosine-5-)-methyltransferase [Filifactor alocis ATCC 35896]
          Length = 341

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 68/324 (20%), Positives = 121/324 (37%), Gaps = 95/324 (29%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD-AVTDSWDKFSSFEAY 81
           I+ G+++  L K P + ++     PPY            + L D    +   +  + E Y
Sbjct: 18  ILCGDALETLRKFPDEIINTCITSPPY------------YGLRDYHKKEQIGREKTVEEY 65

Query: 82  DAFTRAWLLACRRVLKPNGTLWVI------------GSYHNI------------------ 111
                A     RRVLK  GT +++            G Y +                   
Sbjct: 66  LDRLVAVFREVRRVLKSGGTCFIVIGDSYAGSGGGKGQYMDPKYPKKRNGQNPSITQKVL 125

Query: 112 -----------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
                      +R+  +L+   +++ +DI+W K N MP     R   ++E +   S SP+
Sbjct: 126 GYKAKDLMGIPWRLALLLREDGWYLRSDIIWHKENAMPEACRDRPTRSYEHVFLLSKSPR 185

Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG---EKLHPTQK--------- 208
              Y ++Y+ +    ++V  +  ++      ++ L+   G   +K++  +K         
Sbjct: 186 ---YYYDYEQMAEPMKEVSKKR-YVRGRSEDNKYLKEDAGISVQKINKARKYGQYKGDNI 241

Query: 209 -------------------------PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
                                    P  L    +++      IILDPF GSGT G VA  
Sbjct: 242 PQFRNKRDIWTINTVSFRGNHYAVFPPKLAEICMIAGCPKDGIILDPFIGSGTVGFVALM 301

Query: 244 LRRSFIGIEMKQDYIDIATKRIAS 267
             R +IGIE+ ++Y  +A KRI+ 
Sbjct: 302 QDRKYIGIELNEEYCKLARKRISE 325


>gi|134296760|ref|YP_001120495.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134139917|gb|ABO55660.1| DNA methylase N-4/N-6 domain protein [Burkholderia vietnamiensis
           G4]
          Length = 433

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 120/278 (43%), Gaps = 33/278 (11%)

Query: 4   KNSLAINENQNSIFEWKDKI------IKGNSISVLEKLPAKSVDLIFADPPYNLQ----- 52
           KN+   N + NS+  +  KI      I  + ++ ++ LP  S+DL+  DPPY +      
Sbjct: 2   KNTNKSNTSSNSVKNYNLKIKGEGQLINNDCLAGMKNLPDNSIDLVLTDPPYGIADKNRT 61

Query: 53  --LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT--LWVIGSY 108
             +N +  +P  +      D  D F   + +  + + ++    RV K  G+  L++   Y
Sbjct: 62  TFVNSKGGKPITTQEAWGNDFQDNFCDVDGFWEWFKPFMSEMARVTKDGGSIILFLDAKY 121

Query: 109 HNIFRIGTMLQNLNFWILNDIVWRKSNPMP-NFRGRRFQNAHETLIWASPSPKAKGYTFN 167
              F +  + +       N+I + K+N    N +G  + ++ E  IW +       Y   
Sbjct: 122 QGHF-VYLIEKEFGLKWRNNIFFTKTNARTLNMKG--YAHSCEQAIWFTKGKTPFTYNNP 178

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
             AL+  N +V   S        GS+  +       HP +K + ++  ++   +K G +I
Sbjct: 179 MQALRKNNPNVFTGS-------VGSKETK-------HPCEKYKWMIEPLIERHSKKGQLI 224

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           LDPF GS ++     K  R  I  E  + + ++A +RI
Sbjct: 225 LDPFGGSASTLVYGIKQGRKVIAFENSEKFFEMAKERI 262


>gi|332299507|ref|YP_004441428.1| DNA methylase N-4/N-6 domain protein [Porphyromonas asaccharolytica
           DSM 20707]
 gi|332176570|gb|AEE12260.1| DNA methylase N-4/N-6 domain protein [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 639

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 126/319 (39%), Gaps = 89/319 (27%)

Query: 23  IIKGNSISVLEKLPAK--SVDLIFADPPY--NLQLNGQLY-RPDHSLVDAVT-------- 69
           I++G  +S    L  +   VDL++ DPP+        ++Y R +  + +AV         
Sbjct: 66  ILRGECVSACAYLKDQGIEVDLVYIDPPFASGADYAKKVYLRRNPKVAEAVAKAEKELDN 125

Query: 70  ------------DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-----WVIGSYHNIF 112
                       D WDK    E Y  +    LLA + V+ P  ++     W IG Y  I 
Sbjct: 126 EELRAFEETMYGDVWDK----ELYLNWMYENLLAIKSVMSPTASIYVHLDWHIGHYVKIL 181

Query: 113 RIGTMLQNLNFWILNDIVW----RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
            +  +    NF   N+I+W    R+S+       R +   H+ + + +   ++  Y FNY
Sbjct: 182 -MDEIFGEENF--RNEIIWCYKERESS------KRYYNRKHDCIYFYT---RSDDYVFNY 229

Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDG---------------------------- 200
            A+      V ++    +       RLR KDG                            
Sbjct: 230 RAIWEEYSPVTLKKFKFLDQNGEPYRLRYKDGRNDPTEESENTYRQYLKDAEGTLPRDWF 289

Query: 201 ----------EKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
                     E++ + TQKPEALL R + +S+  G ++ D F GSG + AVA KL R FI
Sbjct: 290 ELAIVNQAATERVEYATQKPEALLDRFIKASSDEGMLVADFFGGSGVTAAVATKLGRRFI 349

Query: 250 GIEMKQDYIDIATKRIASV 268
             ++  + I     R+  +
Sbjct: 350 HSDVGVNSIQTTRDRLRKI 368


>gi|224436928|ref|ZP_03657909.1| DNA methylase [Helicobacter cinaedi CCUG 18818]
 gi|313143399|ref|ZP_07805592.1| modification methylase [Helicobacter cinaedi CCUG 18818]
 gi|313128430|gb|EFR46047.1| modification methylase [Helicobacter cinaedi CCUG 18818]
          Length = 267

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 105/267 (39%), Gaps = 65/267 (24%)

Query: 33  EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLAC 92
           +++   SVDL+   PPY                       D    ++ Y+    +     
Sbjct: 27  KRMHDNSVDLVVTSPPY-----------------------DNLRDYKGYNFEFESIANEI 63

Query: 93  RRVLKPNG-TLWVIGSY-------HNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
            R++K  G  +WV+G            F+     Q + F   + +++ K N  P  R   
Sbjct: 64  FRIVKKGGIVVWVVGDKIKNGNKSLTSFKQALYFQKIGFNAHDVMIYAKKNT-PFMRSNA 122

Query: 145 FQNAHETL-IWASPSPKAKGYTFNYDALKAANEDVQM-----RSD--------------- 183
           + N +E + I++   PK    TFN    K A    +M     +SD               
Sbjct: 123 YTNGYEYMFIFSKGKPK----TFNPLKEKTARNGFEMLVANKKSDGKNNKVLKELKQEKT 178

Query: 184 ----WLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
               W   +  G       D E   HP   PE L    ++S +  GDI+ DP  GSGT+ 
Sbjct: 179 KTNIWYYAVGLGGT---TNDREAFKHPAMYPEQLALDHILSWSNEGDIVFDPMCGSGTTC 235

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRI 265
            +A   +R+FIG+++  +YI+IA KR+
Sbjct: 236 KMAFLAKRNFIGVDISWEYIEIAKKRL 262


>gi|104779992|ref|YP_606490.1| adenine specific DNA methylase [Pseudomonas entomophila L48]
 gi|95108979|emb|CAK13675.1| putative Adenine specific DNA methylase [Pseudomonas entomophila
           L48]
          Length = 505

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 44/69 (63%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G++   T KPEAL+ RIL  +T PGD++LD F GSGT+ AVA K+ R +IGIE+      
Sbjct: 296 GDENFATPKPEALMKRILEVATNPGDLVLDSFLGSGTTIAVAHKMGRQWIGIEVGAHAES 355

Query: 260 IATKRIASV 268
               R+A V
Sbjct: 356 HCQPRLARV 364


>gi|330507997|ref|YP_004384425.1| DNA methylase [Methanosaeta concilii GP-6]
 gi|328928805|gb|AEB68607.1| DNA methylase [Methanosaeta concilii GP-6]
          Length = 687

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 47/66 (71%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +PTQKPE L+SRI+ + TK GD++ D F GSGT+GAVA++L R +I  ++ +  I  + K
Sbjct: 355 YPTQKPEKLVSRIIEALTKEGDLVADFFCGSGTTGAVAERLGRRWIMCDLGRFAIHTSRK 414

Query: 264 RIASVQ 269
           R+  +Q
Sbjct: 415 RLIDLQ 420


>gi|218513326|ref|ZP_03510166.1| DNA methylase N-4/N-6 domain-containing protein [Rhizobium etli
           8C-3]
          Length = 321

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/51 (58%), Positives = 38/51 (74%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           PT KPE LL RIL  +T PGD+ILD F GSGT+GAVA K+ R +I +E+ +
Sbjct: 258 PTPKPERLLHRILTIATNPGDLILDSFAGSGTTGAVAHKMGRRWIMVELGE 308


>gi|213619015|ref|ZP_03372841.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 84

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 22/87 (25%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G++++ L+KLP++S+DLIFADPPYN+  +           D + +SWD+ S     
Sbjct: 16  KIIHGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDEASFL--- 62

Query: 82  DAFTRAWLL----ACRRVLKPNGTLWV 104
                AWL      C RVLK +GT+++
Sbjct: 63  -----AWLYECIDECHRVLKKHGTMYI 84


>gi|257455090|ref|ZP_05620329.1| DNA methylase N-4/N-6 domain protein [Enhydrobacter aerosaccus
           SK60]
 gi|257447505|gb|EEV22509.1| DNA methylase N-4/N-6 domain protein [Enhydrobacter aerosaccus
           SK60]
          Length = 572

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 42/65 (64%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
            S  L+N   +++  T KPE L+ RIL  ST   D++LD F GSGT+ AVA K+ R +IG
Sbjct: 282 ASSELKNLFEDEIFETPKPEKLIERILSISTSENDLVLDSFLGSGTTAAVAHKMTRRYIG 341

Query: 251 IEMKQ 255
           IEM +
Sbjct: 342 IEMGE 346


>gi|210614073|ref|ZP_03290029.1| hypothetical protein CLONEX_02242 [Clostridium nexile DSM 1787]
 gi|210150851|gb|EEA81859.1| hypothetical protein CLONEX_02242 [Clostridium nexile DSM 1787]
          Length = 268

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 101/256 (39%), Gaps = 40/256 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR------------PDHSLVDAVT 69
           +I+ G+++ +++     + D +  DPPY      Q  R            P+ +L D   
Sbjct: 30  RILHGDTLKLVKAFQPGTFDAVITDPPYASGGTKQNERNRTTNQKYSSMSPEKALPDFDG 89

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
           D  D+ S    +  +   WL   R+  K    + +   +     +   LQ   +      
Sbjct: 90  DQKDQRS----WTHWMAEWLYDVRKACKSGAPICLFIDWRQYPSMTDALQWAGWIWRGTA 145

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
           VW K+N  P  +GR F+   E +IW S  P                    M     +   
Sbjct: 146 VWDKTNSRPQ-KGR-FRQQTEFIIWGSNGP--------------------MPISRPVSCL 183

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
            G  R  N    ++H T+KP  L+  + V   +PG  ILDPF G+GT+   A +     +
Sbjct: 184 PGVFRYGNPQ-NRVHVTEKPLQLMKDV-VQICEPGGRILDPFAGAGTTILAAAQQGYQAV 241

Query: 250 GIEMKQDYIDIATKRI 265
           GIE+   Y  + T+R+
Sbjct: 242 GIEVTDAYFQLGTERV 257


>gi|153818467|ref|ZP_01971134.1| DNA methylase [Vibrio cholerae NCTC 8457]
 gi|126511026|gb|EAZ73620.1| DNA methylase [Vibrio cholerae NCTC 8457]
          Length = 351

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 43/66 (65%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP+ LL  I+ +S++  D++LD F GSG++G     L R FIGIEM+++  + A  
Sbjct: 285 HPCEKPQDLLQHIIAASSRENDVVLDAFMGSGSTGKACLSLNRRFIGIEMEEETFEQALA 344

Query: 264 RIASVQ 269
            I +++
Sbjct: 345 SIKNIK 350



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 20/158 (12%)

Query: 12  NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
           +Q+++ + +  +I  + ++ L+KL   SVDLI  DPPY  Q+  Q          A  + 
Sbjct: 2   HQHTLHDGRATLIHADCLTYLKKLEDNSVDLILTDPPY-FQVKRQ----------AWDNQ 50

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           W   +SF A+       LL   RVLKP+G+L++            +++N  F + N I+W
Sbjct: 51  WPDVTSFLAW---LDEVLLEFWRVLKPSGSLYLFCGSKLASDTELLIRN-RFEMFNHIIW 106

Query: 132 RK-SNP---MPNFRGRRFQNAHETLIWASPSPKAKGYT 165
            K S P   M     R F  A E +++A     A+GY 
Sbjct: 107 AKPSGPWRRMHKPDLRMFFPATERILFAG-HYNAEGYA 143


>gi|57505716|ref|ZP_00371642.1| adenine specific DNA methyltransferase (mod) [Campylobacter
           upsaliensis RM3195]
 gi|57015989|gb|EAL52777.1| adenine specific DNA methyltransferase (mod) [Campylobacter
           upsaliensis RM3195]
          Length = 650

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 56/95 (58%), Gaps = 2/95 (2%)

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDG-EKLHPTQKPEALLSRILVSSTKPGDIILD 229
           +   NE + +R D+      G     NK+G  K    QKPE L+  I+ ++T+  D+++D
Sbjct: 427 MNDENEIISLRGDFWDCKYDGDMGNINKEGFTKFGQGQKPERLIMDIIKATTQENDLVMD 486

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            F GSGT+ AVA K++R FIGIE + DYI+  TK 
Sbjct: 487 FFAGSGTTLAVAMKMKRRFIGIE-QMDYIESITKE 520


>gi|317013156|gb|ADU83764.1| type IIS restriction enzyme M2 protein (mod) [Helicobacter pylori
           Lithuania75]
          Length = 287

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 125/289 (43%), Gaps = 50/289 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL-VDAVTDSWDKFSSFE 79
           +K+   +S ++ E L   SVDLI   PPY    N + Y  + +  +       +   + E
Sbjct: 4   NKVFYHSSTNMHEVL-DNSVDLIITSPPY---FNIKDYTKNGTQDLQHSAQHVEDLGALE 59

Query: 80  AYDAFTRAWL---LACRRVLKPNGTLW-----------VIGSYHN--IFRIG-----TML 118
            Y+ +    L   L C R LKPNG L            V+ +++N  IF +      ++L
Sbjct: 60  KYEDYLLGLLKVWLECYRALKPNGKLCINVPLMPMLKKVLNTHYNRHIFDLHADIQHSIL 119

Query: 119 QNLN--------FWILNDIVWRKSNP--------MPNFRGRRFQNAHETL--IWASPSPK 160
            +LN         ++L+  +W+++NP         P  R    QN  E +        PK
Sbjct: 120 HDLNNTLENKPKMFLLDVYIWKRTNPTKRLMFGSYPYPRNFYAQNTIEFIGVFVKDGKPK 179

Query: 161 AKGYTFNYDALKAANEDVQM-RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVS 219
                    +     E V+  +  W IPI + ++    K     H       L  R++  
Sbjct: 180 QPTEEQKEQSQLTQEEWVEFTKQIWEIPIPNKNDIAFGK-----HAALMSAELARRLIRL 234

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            +  GD++LDPF GSGT+   AK L+R+FIG E+ ++Y  +  +++ ++
Sbjct: 235 YSCVGDVVLDPFSGSGTTLREAKLLKRNFIGYELYENYKPLIEQKLGNL 283


>gi|218960436|ref|YP_001740211.1| DNA modification methylase [Candidatus Cloacamonas acidaminovorans]
 gi|167729093|emb|CAO80004.1| DNA modification methylase [Candidatus Cloacamonas acidaminovorans]
          Length = 275

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 110/278 (39%), Gaps = 51/278 (18%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G+++ +L+ +  +S+DLI   PPY                D+ T+++      E Y+ + 
Sbjct: 11  GDALEILQTIEKESIDLIVTSPPY---------------ADSRTNTYGGIKPDE-YNEWF 54

Query: 86  RAWLLACRRVLKPNGTLW-------VIGSYHN--IFRIGTMLQNLNFWILNDIVWRKSNP 136
                   R+LKP GT         V G  H   I  I  M +    W   + +W K N 
Sbjct: 55  LPITQELLRILKPTGTFILNIKEKVVNGERHTYVIELILNMRKQGWLWT-EEFIWHKKNC 113

Query: 137 MPNFRGRRFQNAHETLI---------------------WASPSPKAKGYTFNY-DALKAA 174
            P     RF++A E L+                     WA        +T    D  K  
Sbjct: 114 YPGKWPNRFRDAWERLLQFNKNKFFKMYQEEVMIPIGDWAEKRLSNLSHTDKIRDTSKVG 173

Query: 175 NEDVQMRSDWLIP---ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
           +   +  S+W+       +    L  + G K H    P AL    +   T+PGD++LDPF
Sbjct: 174 SGFGKNVSNWVGKDKVYPTNVLHLATECGNKNHSATFPYALPEWFIKLFTRPGDVVLDPF 233

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            GSGT+   A  + R  IGI++  +Y ++   +I + Q
Sbjct: 234 MGSGTAVFAALNMGRKAIGIDINPEYYNLVLGKIQNQQ 271


>gi|194335796|ref|YP_002017590.1| DNA methylase N-4/N-6 domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308273|gb|ACF42973.1| DNA methylase N-4/N-6 domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 416

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 106/266 (39%), Gaps = 52/266 (19%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA--- 91
           LP +SV L+   PPY              L D  TD+   F   E+Y+++     L    
Sbjct: 4   LPGRSVHLVVTSPPY------------WQLKDYGTDNQIGFH--ESYESYINNLNLVWNE 49

Query: 92  CRRVLKPNGTLWV-IGS------YHNIFR-------IGTMLQNLNFWILNDIVWRKSNPM 137
           C RVL P   L + IG       Y+  ++       I    + + F  +  ++W+K    
Sbjct: 50  CERVLHPGCRLCINIGDQFARSVYYGRYKVIPIRTEIIKFCETIGFDYMGAVIWQKVTTT 109

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL-------------KAANEDVQMRSDW 184
               G        +++ + P P+      +Y+ +             K   E   M ++ 
Sbjct: 110 NTTGG-------ASIMGSFPYPRNGILKIDYEFILIFKKQGDAPKPTKEQKERSAMTTEE 162

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
                SG         E  H    PE L  R++      GD +LDPF GSGT+   AK L
Sbjct: 163 WNTYFSGHWNFAGAKQEG-HLAMFPEELPHRLIKMFAFRGDTVLDPFMGSGTTSLAAKNL 221

Query: 245 RRSFIGIEMKQDYIDIATKRIASVQP 270
            R+ +G E+  ++I+IA +++ + QP
Sbjct: 222 ERNSVGYEINPEFIEIARQKLNTKQP 247


>gi|190890732|ref|YP_001977274.1| helicase/DNA methylase hybrid protein [Rhizobium etli CIAT 652]
 gi|190696011|gb|ACE90096.1| putative helicase/DNA methylase hybrid protein [Rhizobium etli CIAT
            652]
          Length = 1324

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/51 (58%), Positives = 38/51 (74%)

Query: 205  PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
            PT KPE LL RIL  +T PGD+ILD F GSGT+GAVA K+ R +I +E+ +
Sbjct: 1074 PTPKPERLLHRILTIATNPGDLILDSFAGSGTTGAVAHKMGRRWIMVELGE 1124


>gi|308189375|ref|YP_003933505.1| DNA methylase [Pantoea vagans C9-1]
 gi|308055990|gb|ADO08159.1| putative DNA methylase [Pantoea vagans C9-1]
          Length = 909

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 98/229 (42%), Gaps = 59/229 (25%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + ++GNS+ ++   P  S+D I  DPPY   L G   R   S+   V+D W   +S E +
Sbjct: 3   RFMRGNSVEIMANFPDNSIDFILTDPPY---LVGFKDRSGRSIAGDVSDEWVLPASREMF 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN---LNFWILNDIVWRKSNPMP 138
                       RVLK N +L V  S++   R+   +Q      F ++  +V+ K+    
Sbjct: 60  ------------RVLK-NNSLAV--SFYGWNRVDIFMQAWKAAGFRVVGHLVFTKTYASK 104

Query: 139 N-FRGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           + F G + ++A+        + A P P    + +                          
Sbjct: 105 SAFVGYQHESAYLLAKGHPPLPAKPLPDVMPWQYT------------------------- 139

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                  G + HPT+KP ++L  ++ + TKPG ++LDPF GSG++   A
Sbjct: 140 -------GNRHHPTEKPVSVLQPLIETFTKPGGLVLDPFAGSGSTCVAA 181


>gi|224437622|ref|ZP_03658575.1| adenine-specific DNA methylase [Helicobacter cinaedi CCUG 18818]
 gi|313144074|ref|ZP_07806267.1| modification methylase HhaII [Helicobacter cinaedi CCUG 18818]
 gi|313129105|gb|EFR46722.1| modification methylase HhaII [Helicobacter cinaedi CCUG 18818]
          Length = 225

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 101/228 (44%), Gaps = 27/228 (11%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           + + ++  L ++SVDL F DP Y   L+   Y  +       ++        +  +   +
Sbjct: 22  DGLELMGSLESRSVDLCFFDPQYRGVLDKMRYGNEGERQKGRSNL------VQMSETQIQ 75

Query: 87  AWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
           +++    RVLKP+  L + I  +H    +   ++  +  +++ I W K      +R RR 
Sbjct: 76  SFICEIDRVLKPSCYLMLWIDKFHLCEGVKAWVKQTSLQVVDLITWDKLKIGMGYRTRR- 134

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
           Q+ +  ++  +P      +  +            +R  W       SE++ N D  K+HP
Sbjct: 135 QSEYLLVLQKAPIKAKNTWRLH-----------NIRDVW-------SEKIPN-DELKIHP 175

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
             KP+ L   ++ S T  GD++LDP  GS +    AK+L R FIG  +
Sbjct: 176 HSKPKGLQKALIESCTNKGDLVLDPASGSFSVFECAKELGREFIGTNL 223


>gi|90425626|ref|YP_533996.1| DNA methylase N-4/N-6 [Rhodopseudomonas palustris BisB18]
 gi|90107640|gb|ABD89677.1| DNA methylase N-4/N-6 [Rhodopseudomonas palustris BisB18]
          Length = 544

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 46/71 (64%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           TQKP ALL RI+ +S+  GD++LDPF G GT+   A+KL R++IGI++    I++  +R+
Sbjct: 310 TQKPVALLERIISASSNEGDVVLDPFCGCGTTVHAAQKLNRNWIGIDVTHLAINLIKRRL 369

Query: 266 ASVQPLGNIEL 276
               P    E+
Sbjct: 370 IDAFPHAQFEI 380


>gi|312171443|emb|CBX79701.1| DNA methylase N-4/N-6 domain-containing protein [Erwinia amylovora
           ATCC BAA-2158]
          Length = 506

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 37/50 (74%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           T KPE L+ RIL  ++ PGD+ILD F GSGT+ AVA K+ R +IGIEM +
Sbjct: 300 TPKPERLIQRILHIASNPGDLILDSFLGSGTTAAVAHKMNRRYIGIEMGE 349


>gi|292487337|ref|YP_003530209.1| type III restriction-modification system StyLTI enzyme mod [Erwinia
           amylovora CFBP1430]
 gi|291552756|emb|CBA19801.1| Type III restriction-modification system StyLTI enzyme mod [Erwinia
           amylovora CFBP1430]
          Length = 488

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 37/50 (74%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           T KPE L+ RIL  ++ PGD+ILD F GSGT+ AVA K+ R +IGIEM +
Sbjct: 282 TPKPERLIQRILHIASNPGDLILDSFLGSGTTAAVAHKMNRRYIGIEMGE 331


>gi|71274631|ref|ZP_00650919.1| DNA methylase N-4/N-6 [Xylella fastidiosa Dixon]
 gi|71899657|ref|ZP_00681811.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
 gi|170730897|ref|YP_001776330.1| DNA modification methylase-like protein [Xylella fastidiosa M12]
 gi|71164363|gb|EAO14077.1| DNA methylase N-4/N-6 [Xylella fastidiosa Dixon]
 gi|71730609|gb|EAO32686.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
 gi|167965690|gb|ACA12700.1| DNA modification methylase-like protein [Xylella fastidiosa M12]
          Length = 273

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 117/280 (41%), Gaps = 53/280 (18%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
           + +  NS    +  I  G+ I V++ LPA+S  +I   PPYNL+ +       + + D  
Sbjct: 26  LPKGDNSARNLRGTIHSGDCIKVMQTLPAESFRVIVTSPPYNLKNST-----GNGMKDGR 80

Query: 69  TDSWDKFSSFEAYD------------AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI-G 115
              W   +  E YD             + R  L    R+L+ +G ++    Y++ +R+  
Sbjct: 81  GGKWANAALIEGYDNHEDVMPHDEYVQWQRDCLTEMMRLLRNDGAIF----YNHKWRVQA 136

Query: 116 TMLQN-----LNFWILNDIVWRKSNPMPNFRGRRFQNAHETL-IWASPSPKAKGYTFNYD 169
            +LQ+       F +   I+W+++  + NF    F   +E + + A P        F   
Sbjct: 137 GLLQDRTDIVTGFPVRQIIIWQRNGGI-NFNSGYFLPTYEVIYLIAKPD-------FKLK 188

Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
               A  DV     W IP          ++ +  HP   P  L  R + S       +LD
Sbjct: 189 PKANAIGDV-----WTIP----------QESKNPHPAPFPVELAQRCIESVG--AGPVLD 231

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           PF GSGT+   A+ L   ++GIE    Y++++  R+  ++
Sbjct: 232 PFMGSGTTAVAAEILGYDWVGIEKSPKYVEMSLDRLKRLK 271


>gi|294155855|ref|YP_003560239.1| adenine-specific DNA modification methyltransferase [Mycoplasma
           crocodyli MP145]
 gi|291600015|gb|ADE19511.1| adenine-specific DNA modification methyltransferase [Mycoplasma
           crocodyli MP145]
          Length = 323

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 42/67 (62%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           LHPTQKP  L+ R++   +  G++ILD F GSG++G  A  L R F+G E+ + +   + 
Sbjct: 257 LHPTQKPVKLMERLIKMYSNEGNVILDCFMGSGSTGVAALNLNRKFLGCELDEQHFQTSK 316

Query: 263 KRIASVQ 269
            RI +++
Sbjct: 317 NRIENIK 323



 Score = 40.8 bits (94), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 24/117 (20%)

Query: 32  LEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
           L+++  KSVD I  DPPY     +QL+GQ  + D          WD   + +  D F R 
Sbjct: 16  LDEIDEKSVDFICIDPPYGKINGMQLSGQKTKID----------WD--VNIDWKDLFNR- 62

Query: 88  WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
                 RVLKP GT+ V G   N      ++ N+ ++   +++W K+N    F   +
Sbjct: 63  ----FTRVLKPGGTIAVFG--QNPTYSMMIIDNIKYYKY-ELIWVKNNAAQGFHADK 112


>gi|292898582|ref|YP_003537951.1| DNA methylase [Erwinia amylovora ATCC 49946]
 gi|291198430|emb|CBJ45538.1| putative DNA methylase [Erwinia amylovora ATCC 49946]
          Length = 506

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 37/50 (74%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           T KPE L+ RIL  ++ PGD+ILD F GSGT+ AVA K+ R +IGIEM +
Sbjct: 300 TPKPERLIQRILHIASNPGDLILDSFLGSGTTAAVAHKMNRRYIGIEMGE 349


>gi|11499004|ref|NP_070238.1| modification methylase, type III R/M system [Archaeoglobus fulgidus
           DSM 4304]
 gi|2649165|gb|AAB89839.1| modification methylase, type III R/M system [Archaeoglobus fulgidus
           DSM 4304]
          Length = 969

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 46/70 (65%), Gaps = 1/70 (1%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           DG K   T+  E LL R++ S++  GD++LD F GSGT+ AVA+KLRR +IG+EM + + 
Sbjct: 704 DGFKF-STENSEILLKRVIESTSNEGDLVLDFFLGSGTTTAVAQKLRRKWIGVEMGEHFW 762

Query: 259 DIATKRIASV 268
            +   R+  V
Sbjct: 763 SVVLPRMKKV 772


>gi|288818917|ref|YP_003433265.1| adenine-specific DNA methylase [Hydrogenobacter thermophilus TK-6]
 gi|288788317|dbj|BAI70064.1| adenine-specific DNA methylase [Hydrogenobacter thermophilus TK-6]
 gi|308752504|gb|ADO45987.1| DNA methylase N-4/N-6 domain protein [Hydrogenobacter thermophilus
           TK-6]
          Length = 824

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 43/64 (67%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PT+  E LL R++ S++  GD+++D F GSGT+ AVA KL+R +IG+EM + +  +   R
Sbjct: 624 PTENSEILLKRVIESTSNEGDLVMDFFLGSGTTTAVAHKLKRKWIGVEMGEHFYTVVLPR 683

Query: 265 IASV 268
           +  V
Sbjct: 684 MKKV 687


>gi|124009615|ref|ZP_01694288.1| DNA methylase [Microscilla marina ATCC 23134]
 gi|123984756|gb|EAY24736.1| DNA methylase [Microscilla marina ATCC 23134]
          Length = 322

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 45/74 (60%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++ D   +HPT KP +L+  ++   T     +LDPF GSG++G  A  L+R+F G E+  
Sbjct: 247 QHADDYNIHPTLKPVSLMQHLVKLLTFEQQTVLDPFAGSGSTGVAALNLQRNFTGFELSP 306

Query: 256 DYIDIATKRIASVQ 269
           DY  IA KR+ +VQ
Sbjct: 307 DYAKIAQKRLKAVQ 320


>gi|110667919|ref|YP_657730.1| site-specific DNA-methyltransferase [Haloquadratum walsbyi DSM
           16790]
 gi|109625666|emb|CAJ52098.1| site-specific DNA-methyltransferase [Haloquadratum walsbyi DSM
           16790]
          Length = 284

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 105/267 (39%), Gaps = 29/267 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS-SFEAY 81
           I +G+ +  L +L   ++ L F  PPY    N   Y      V   TD W++   S++ Y
Sbjct: 11  IHRGDCLDGLRELAEDAITLGFTSPPY---FNAVNYEEHVEKVHGNTDHWEREEMSYDDY 67

Query: 82  DAFTRAWLLACRRVLKPNG-TLWVIGSYH-------NIFRIGTMLQNLNFWILNDIVWRK 133
             F         RV +P G T+  I   H         F +   ++++ +    DI+W K
Sbjct: 68  QDFLIKRFEEVFRVTRPGGHTIVNISPVHWEDERVALPFHLVGWMEDIGWTFKEDIIWEK 127

Query: 134 SNPMPNFRGRRFQN-----------AHETLIW---ASPSPKAKGYTFNYDALKAANEDVQ 179
                   G   QN           A   L++   A    K   Y    +  K  NE + 
Sbjct: 128 PVAKDRRSGVLLQNPYPGYYYPSVVAEYVLVFQKEADDENKNNIYWNRTEEEKTKNE-IS 186

Query: 180 MRSDWLIPICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
           +  D+         ++R    GE  HP   P  L  R++   +   D ++D F GSG + 
Sbjct: 187 L-DDYQGEKSKNVWKIRQVAPGENEHPAPFPRELAERVIQFYSYQDDTVMDIFAGSGQTL 245

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRI 265
             A+ L R FIG E + +Y++ A  R+
Sbjct: 246 LAAQDLDREFIGFETQHEYVEYAKNRV 272


>gi|29376623|ref|NP_815777.1| adenine methyltransferase, putative [Enterococcus faecalis V583]
 gi|307276047|ref|ZP_07557180.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX2134]
 gi|29344087|gb|AAO81847.1| adenine methyltransferase, putative [Enterococcus faecalis V583]
 gi|306507377|gb|EFM76514.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX2134]
 gi|315575105|gb|EFU87296.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0309B]
 gi|315582532|gb|EFU94723.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0309A]
          Length = 400

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 101/238 (42%), Gaps = 29/238 (12%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           NS+ V + +  K  DL+  DPPYN+   G+    +   +   +   ++F SF  Y+AF+ 
Sbjct: 169 NSLEVEKLMGNKKADLLITDPPYNVAYEGK--GKEALTIKNDSKETNEFHSF-LYEAFS- 224

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
               A    +K   + +V  +   +    T L+   F +  +++W K N M   R + + 
Sbjct: 225 ----AAINNMKLGSSFYVWYASSEVVNFHTALEEAGFLVKQELIWNK-NSMVLSR-QDYH 278

Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
             HE  ++   S  +  +  +       N D         P  +           K HPT
Sbjct: 279 WKHEPCLYGWASGGSHSWYSDRKQTTILNFDR--------PTVN-----------KEHPT 319

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            KP AL    + +S+K GD ILD F GSGT+    ++  R    +E+   Y+D+   R
Sbjct: 320 MKPVALFDYQIKNSSKQGDCILDLFGGSGTTLIACEQNEREAYLMELDPRYVDVIIAR 377


>gi|296136000|ref|YP_003643242.1| DNA methylase N-4/N-6 domain protein [Thiomonas intermedia K12]
 gi|295796122|gb|ADG30912.1| DNA methylase N-4/N-6 domain protein [Thiomonas intermedia K12]
          Length = 508

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 40/61 (65%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           KPE LLSRI+  +T PGD++LD F GSGT+ AVA K+ R +IGIEM +        R+  
Sbjct: 305 KPEGLLSRIVHIATNPGDLVLDSFLGSGTTAAVAHKMGRRWIGIEMGEHARTHCIPRLQK 364

Query: 268 V 268
           V
Sbjct: 365 V 365


>gi|256784498|ref|ZP_05522929.1| DNA methylase [Streptomyces lividans TK24]
 gi|289768383|ref|ZP_06527761.1| DNA methylase [Streptomyces lividans TK24]
 gi|145244335|gb|ABP49146.1| putative DNA methylase [Streptomyces lividans]
 gi|289698582|gb|EFD66011.1| DNA methylase [Streptomyces lividans TK24]
          Length = 248

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 104/254 (40%), Gaps = 41/254 (16%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNL------QLNGQLYRPD-------HSLVDAVTDS 71
           +G++++VL+ LP +SV  +  DPPYN          G+  R         H L +   ++
Sbjct: 7   RGDALTVLKSLPDESVQAVITDPPYNSGGRTSSDRTGRTARAKYVTSNSAHDLANFPGEN 66

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
            D+ S    Y ++    L    R    +    V   +         LQ   +     I W
Sbjct: 67  RDQRS----YRSWLTELLTEAYRASTEHAVAMVFTDWRQEPTTSDALQMAGWTWSGTIPW 122

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
            K +  P   G +  +  E +IW       KG   N               D  +P    
Sbjct: 123 IKPSSRPRKGGPKQDS--EFIIWG-----VKGSLDNT-------------RDLYLPGHYI 162

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           + + R    +++H TQKP  ++ + LV     G  +LDPF GSG++G  A +  R F+G+
Sbjct: 163 ASQPRK---DRVHITQKPVEVMQQ-LVQVCPEGGTVLDPFTGSGSTGVAALREGRRFVGV 218

Query: 252 EMKQDYIDIATKRI 265
           E+   Y D+A +R+
Sbjct: 219 ELSAHYADVAEERL 232


>gi|315034680|gb|EFT46612.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0027]
          Length = 400

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 101/238 (42%), Gaps = 29/238 (12%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           NS+ V + +  K  DL+  DPPYN+   G+    +   +   +   ++F SF  Y+AF+ 
Sbjct: 167 NSLEVEKLMGNKKADLLITDPPYNVAYEGK--GKEALTIKNDSKETNEFHSF-LYEAFS- 222

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
               A    +K   + +V  +   +    T L+   F +  +++W K N M   R + + 
Sbjct: 223 ----AAINNMKLGSSFYVWYASSEVVNFHTALEEAGFLVKQELIWNK-NSMVLSR-QDYH 276

Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
             HE  ++   S  +  +  +       N D         P  +           K HPT
Sbjct: 277 WKHEPCLYGWASGGSHSWYSDRKQTTILNFDR--------PTVN-----------KEHPT 317

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            KP AL    + +S+K GD ILD F GSGT+    ++  R    +E+   Y+D+   R
Sbjct: 318 MKPVALFDYQIKNSSKQGDCILDLFGGSGTTLIACEQNEREAYLMELDPRYVDVIIAR 375


>gi|300741895|ref|ZP_07071916.1| adenine specific DNA methylase [Rothia dentocariosa M567]
 gi|300381080|gb|EFJ77642.1| adenine specific DNA methylase [Rothia dentocariosa M567]
          Length = 402

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 130/309 (42%), Gaps = 53/309 (17%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNL-------------------QLNGQLYRPD-- 61
           +++ ++++ L +LP+ S  +I+ DPP+N                    Q  G   R    
Sbjct: 21  VVQADNLAYLSELPSASFTVIYIDPPFNTGKTQTRRTLKTAPAADGEEQGKGNGNRTGFQ 80

Query: 62  -HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
             S   A+        +FE Y AF    +    R+L  +GTL++   +  +     M   
Sbjct: 81  GKSYTSALQTLASYHDAFEDYWAFLEPRIRQAHRLLTEDGTLYLHLDWREVHYAKVMCDM 140

Query: 121 L--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA----- 173
           +      +N+I+W       +   +R+   H+ ++    +P+   Y FN DA+       
Sbjct: 141 IFGRDCFINEIIWAYDYGAKS--TKRWPTKHDNILMYVKNPQE--YYFNADAVDREPYMA 196

Query: 174 ---ANEDVQMRSD-----WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
                E+   R       W   I S +   + K G   +PTQKP  LL R++ +S++PGD
Sbjct: 197 PGLVTEEKAARGKLPTDVWWHTIVSPTG--KEKTG---YPTQKPLGLLKRMIAASSRPGD 251

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
            +LD F GSGT+GA A  L R F+ ++     I++  KR+       N++       R  
Sbjct: 252 WVLDFFAGSGTTGAAAAALGRKFVCVDQNPPAIEVMAKRL-------NVDAESFADYRGV 304

Query: 286 PRVAFNLLV 294
           PR A  L  
Sbjct: 305 PRGAAVLFT 313


>gi|57238177|ref|YP_178742.1| type III restriction/modification enzyme, methylase subunit
           [Campylobacter jejuni RM1221]
 gi|205355478|ref|ZP_03222249.1| Type III RM methylase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|57166981|gb|AAW35760.1| type III restriction/modification enzyme, methylase subunit
           [Campylobacter jejuni RM1221]
 gi|205346712|gb|EDZ33344.1| Type III RM methylase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|315058042|gb|ADT72371.1| Type III restriction-modification system methylation subunit
           [Campylobacter jejuni subsp. jejuni S3]
          Length = 675

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 47/68 (69%), Gaps = 2/68 (2%)

Query: 198 KDGE-KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           K+G+ +    +KPEALL RI+  ST   DI++D F GSGT+ AVA K++R +IGIE + D
Sbjct: 479 KEGDTQFSNAKKPEALLQRIIEISTNENDIVMDFFAGSGTTLAVAHKMKRKWIGIE-QMD 537

Query: 257 YIDIATKR 264
           YI+  TK 
Sbjct: 538 YIETITKE 545


>gi|255975407|ref|ZP_05425993.1| transferase [Enterococcus faecalis T2]
 gi|255968279|gb|EET98901.1| transferase [Enterococcus faecalis T2]
          Length = 400

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 101/238 (42%), Gaps = 29/238 (12%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           NS+ V + +  K  DL+  DPPYN+   G+    +   +   +   ++F SF  Y+AF+ 
Sbjct: 169 NSLEVEKLMGNKKADLLITDPPYNVAYEGK--GKEALTIKNDSKETNEFHSF-LYEAFS- 224

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
               A    +K   + +V  +   +    T L+   F +  +++W K N M   R + + 
Sbjct: 225 ----AAINNMKLGSSFYVWYASSEVVNFHTALEEAGFLVKQELIWNK-NSMVLSR-QDYH 278

Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
             HE  ++   S  +  +  +       N D         P  +           K HPT
Sbjct: 279 WKHEPCLYGWASGGSHSWYSDRKQTTILNFDR--------PTVN-----------KEHPT 319

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            KP AL    + +S+K GD ILD F GSGT+    ++  R    +E+   Y+D+   R
Sbjct: 320 MKPVALFDYQIKNSSKQGDCILDLFGGSGTTLIACEQNEREAYLMELDPRYVDVIIAR 377


>gi|308273843|emb|CBX30444.1| hypothetical protein N47_Q17670 [uncultured Desulfobacterium sp.]
          Length = 321

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 108/262 (41%), Gaps = 44/262 (16%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           DKI   +S  +++ +P  SV L+   PPYN                 V   +DK  S + 
Sbjct: 57  DKIYCKSS-EIMDDIPDYSVHLMVTSPPYN-----------------VKKEYDKDLSLDE 98

Query: 81  YDAFTRAWLLACRRVLKPNGTLWV----IGSYHNI----FRIGTMLQNLNFWILNDIVWR 132
           Y    +       + L   G   +    +G    I    + I  MLQ L +++  +I+W 
Sbjct: 99  YRTLLKVVFKETYKKLVTGGRACINIANLGRKPYIPLHSYIIEDMLQ-LGYFMRGEIIWN 157

Query: 133 K-SNPMPNFRGRRFQNA--------HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
           K S+  P+     +Q+A        HE ++  S    ++    N D +         +S 
Sbjct: 158 KASSSSPSTAWGSWQSAANPVLRDIHEYILVFSKESFSRKRGNNKDTIAKEEFLEWTKSV 217

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           W  P  S             HP   PE L  R++   T   D++LDPF GSGT+   A K
Sbjct: 218 WTFPAVSARS--------IGHPAPFPEELPHRLIQLYTFEKDVVLDPFCGSGTACLTALK 269

Query: 244 LRRSFIGIEMKQDYIDIATKRI 265
             R +IG +++ +Y+ +A +RI
Sbjct: 270 DGRHYIGYDIEPEYVKLANRRI 291


>gi|331686024|ref|ZP_08386594.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H299]
 gi|331076750|gb|EGI47978.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H299]
          Length = 189

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 91/238 (38%), Gaps = 61/238 (25%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPY---LVGFRDRSGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                       RVLK +  +     +H I R     ++  F +   +V+ K        
Sbjct: 60  ------------RVLKKDALMVSFYGWHRIDRFMAAWKHAGFSVAGHLVFTK-------- 99

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS-ERLRNK-- 198
                                    NY +  A    V  R +    +  GS  R RN   
Sbjct: 100 -------------------------NYTSKSAY---VAYRHECAYILAKGSPARPRNPLP 131

Query: 199 -------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
                   G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +I
Sbjct: 132 DVLGWKYSGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYI 189


>gi|320007886|gb|ADW02736.1| DNA methylase N-4/N-6 domain protein [Streptomyces flavogriseus
           ATCC 33331]
          Length = 250

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 108/265 (40%), Gaps = 41/265 (15%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNL------QLNGQLYRPD-------HSLVDAVTDS 71
           +G++++VL+ LP +SV  +  DPPYN          G+  R         H L +   ++
Sbjct: 7   RGDALTVLKSLPDESVQAVITDPPYNSGGRTSSDRTGRTARAKYVTSNSAHDLANFPGEN 66

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
            D+ S    Y ++    L    R    +    V   +         LQ   +     I W
Sbjct: 67  RDQRS----YRSWLTELLTEAYRASTEHAVAMVFTDWRQEPTTSDALQMAGWTWSGTIPW 122

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
            K +  P   G +  +  E +IW       KG   N         D+ +   +   I S 
Sbjct: 123 IKPSSRPRKGGPKQDS--EFIIWG-----VKGSLDN-------TRDLYLPGHY---IASQ 165

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
             + R      +H TQKP  ++ + LV     G  +LDPF GSG++G  A +  R F+G+
Sbjct: 166 PRKGR------VHITQKPVEVMQQ-LVQVCPEGGTVLDPFTGSGSTGVAALREGRRFVGV 218

Query: 252 EMKQDYIDIATKRIASVQPLGNIEL 276
           E+   Y D+A +R+ S     + EL
Sbjct: 219 ELSVHYADVAEERLRSELTKDDFEL 243


>gi|315576665|gb|EFU88856.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0630]
          Length = 398

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 101/238 (42%), Gaps = 29/238 (12%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           NS+ V + +  K  DL+  DPPYN+   G+    +   +   +   ++F SF  Y+AF+ 
Sbjct: 167 NSLEVEKLMGNKKADLLITDPPYNVAYEGK--GKEALTIKNDSKETNEFHSF-LYEAFS- 222

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
               A    +K   + +V  +   +    T L+   F +  +++W K N M   R + + 
Sbjct: 223 ----AAINNMKLGSSFYVWYASSEVVNFHTALEEAGFLVKQELIWNK-NSMVLSR-QDYH 276

Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
             HE  ++   S  +  +  +       N D         P  +           K HPT
Sbjct: 277 WKHEPCLYGWASGGSHSWYSDRKQTTILNFDR--------PTVN-----------KEHPT 317

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            KP AL    + +S+K GD ILD F GSGT+    ++  R    +E+   Y+D+   R
Sbjct: 318 MKPVALFDYQIKNSSKQGDCILDLFGGSGTTLIACEQNEREAYLMELDPRYVDVIIAR 375


>gi|308270524|emb|CBX27136.1| hypothetical protein N47_A11650 [uncultured Desulfobacterium sp.]
          Length = 388

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 46/75 (61%)

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           +LR    + +HPT KP AL++ ++   ++ GD++LDPF GSGT+   A    R  IGIE 
Sbjct: 305 KLRPALRKNIHPTVKPLALMTYLIKMGSRKGDVVLDPFMGSGTTCIAALLTNRRSIGIEK 364

Query: 254 KQDYIDIATKRIASV 268
           +++Y  IA +R  S 
Sbjct: 365 EEEYFSIAKERCKSA 379


>gi|206901346|ref|YP_002250136.1| m4C-methyltransferase [Dictyoglomus thermophilum H-6-12]
 gi|206740449|gb|ACI19507.1| m4C-methyltransferase [Dictyoglomus thermophilum H-6-12]
          Length = 309

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 108/261 (41%), Gaps = 44/261 (16%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           +E++P  S+ L+   PPYN                 V   +D+  + + Y  F +     
Sbjct: 66  MEEIPDNSIHLMVTSPPYN-----------------VGKEYDENLTLKEYREFLKRVWKE 108

Query: 92  CRRVLKPNGTLWV----IGSYHNI----FRIGTMLQNLNFWILNDIVWRK-SNPMPNFR- 141
             RVL P G + +    +G    I    + I  ML+ + F +  +I+W K S+  P+   
Sbjct: 109 VYRVLVPGGRVCINIANLGRKPYIPLHCYIIEDMLE-IGFLMRGEIIWNKASSASPSTAW 167

Query: 142 -------GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM-RSDWLIPICSGSE 193
                      ++ HE ++  S     +    N  +     E ++  +S W  P  S   
Sbjct: 168 GSWLSPANPTLRDIHEYILVFSKDTFTRKNLRNRKSTITKEEFLEFTKSVWTFPAESA-- 225

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
               K G   HP   P  L  R +   T  G+++LDPF GSG +   A K +R +IG E+
Sbjct: 226 ---KKIG---HPAPFPIELPYRCIQLYTFEGEVVLDPFMGSGQTAIAALKAKRFYIGYEI 279

Query: 254 KQDYIDIATKRIASVQPLGNI 274
            + Y+++A +RI       NI
Sbjct: 280 NKVYVNLANRRIREFLSSQNI 300


>gi|321272264|gb|ADW80149.1| putative DNA methylase [Wolbachia endosymbiont wVitA of Nasonia
           vitripennis phage WOVitA1]
 gi|321272321|gb|ADW80203.1| putative DNA methylase [Wolbachia endosymbiont wVitB of Nasonia
           vitripennis phage WOVitB]
          Length = 404

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 41/62 (66%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           LHPT KP  L+ R +V+S++PGDI+LDPF GSG++    ++  R    IE+   ++D+  
Sbjct: 317 LHPTMKPVELMERAIVNSSRPGDIVLDPFSGSGSTLIACERTGRICRTIELDSKFVDVTI 376

Query: 263 KR 264
           KR
Sbjct: 377 KR 378


>gi|294861402|gb|ADF45506.1| DNA methylase-like protein [Wolbachia endosymbiont of Culex
           molestus]
          Length = 425

 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 41/62 (66%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           LHPT KP  L+ R +V+S++PGDI+LDPF GSG++    ++  R    IE+   ++D+  
Sbjct: 311 LHPTMKPVELMERAIVNSSRPGDIVLDPFSGSGSTLIACERTGRICRTIELDSKFVDVTI 370

Query: 263 KR 264
           KR
Sbjct: 371 KR 372


>gi|190570854|ref|YP_001975212.1| Phage related DNA methylase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213019341|ref|ZP_03335148.1| Phage related DNA methylase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357126|emb|CAQ54537.1| Phage related DNA methylase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995450|gb|EEB56091.1| Phage related DNA methylase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 406

 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 41/62 (66%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           LHPT KP  L+ R +V+S++PGDI+LDPF GSG++    ++  R    IE+   ++D+  
Sbjct: 319 LHPTMKPVELMERAIVNSSRPGDIVLDPFSGSGSTLIACERTGRICRTIELDSKFVDVTI 378

Query: 263 KR 264
           KR
Sbjct: 379 KR 380


>gi|153809570|ref|ZP_01962238.1| hypothetical protein BACCAC_03888 [Bacteroides caccae ATCC 43185]
 gi|149127815|gb|EDM19039.1| hypothetical protein BACCAC_03888 [Bacteroides caccae ATCC 43185]
          Length = 417

 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 99/235 (42%), Gaps = 41/235 (17%)

Query: 94  RVLKPNGTLWVIGSYHN--------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
           ++ K +GTLW+I              F +   L+++ +++ + I+W+K   +P       
Sbjct: 70  KITKDDGTLWIIIDTFKRNNQVVSLPFDLANKLKDIGWFLQDIIIWKKDKTVPWSTNGFM 129

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL-------------------- 185
           Q   E +++ S SPK K    N D ++  +   Q++  W+                    
Sbjct: 130 QRKFEYILFFSKSPKYKS---NKDKVRIYDTS-QLKKWWVKYPERYNPKGKALDEIWEFP 185

Query: 186 IPICS--GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           IP+    G E +R       H    P+ L++ ++  ST   DIILDPF GSGT    +  
Sbjct: 186 IPVQGSWGDEYIR-------HFCPLPKELVATMIQISTDENDIILDPFAGSGTVLTQSAY 238

Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGL 298
           ++R++IG E+  +YI +    I         E  +L  +  +      +L  R L
Sbjct: 239 MKRNYIGFELNNEYIKMFENYIKRTIKKYRKEYELLEQQNNQSNFETQILNLRAL 293


>gi|294861400|gb|ADF45505.1| DNA methylase-like protein [Wolbachia endosymbiont of Culex
           pipiens]
          Length = 398

 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 41/62 (66%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           LHPT KP  L+ R +V+S++PGDI+LDPF GSG++    ++  R    IE+   ++D+  
Sbjct: 311 LHPTMKPVELMERAIVNSSRPGDIVLDPFSGSGSTLIACERTGRICRTIELDSKFVDVTI 370

Query: 263 KR 264
           KR
Sbjct: 371 KR 372


>gi|295837375|ref|ZP_06824308.1| DNA (cytosine-5-)-methyltransferase [Streptomyces sp. SPB74]
 gi|197696113|gb|EDY43046.1| DNA (cytosine-5-)-methyltransferase [Streptomyces sp. SPB74]
          Length = 248

 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 103/254 (40%), Gaps = 41/254 (16%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNL------QLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +G+++++L+ LP +SV  +  DPPYN       +  G+  R  +   ++  D     ++F
Sbjct: 7   RGDALTILKTLPDESVHAVITDPPYNSGGRTSSERTGRTARAKYVTSNSAHD----LATF 62

Query: 79  -------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
                   +Y ++    L    R    +    V   +         LQ   +     I W
Sbjct: 63  PGENRDQRSYRSWLTELLTEAYRAATEHSVAMVFSDWRQEPTTTDALQMAGWTWSGTISW 122

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
            K    P   G +     E + W       KG   N               D  +P    
Sbjct: 123 IKPASRPRKGGPKQDT--EFVTWG-----VKGTLDNT-------------RDLYLPGHYI 162

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           + + R    +++H TQKP  ++ R LV     G  +LDPF GSG++G  A +  R+F+G+
Sbjct: 163 ASQPRK---DRVHITQKPVEIM-RQLVKVCPEGGTVLDPFTGSGSTGVAALREGRNFLGV 218

Query: 252 EMKQDYIDIATKRI 265
           E+   Y DIA +R+
Sbjct: 219 ELSTHYADIAERRL 232


>gi|190570706|ref|YP_001975064.1| Phage related DNA methylase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190570760|ref|YP_001975118.1| Phage related DNA methylase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190571683|ref|YP_001976041.1| Phage related DNA methylase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213019711|ref|ZP_03335516.1| Phage related DNA methylase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190356978|emb|CAQ54366.1| Phage related DNA methylase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190357032|emb|CAQ54425.1| Phage related DNA methylase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190357955|emb|CAQ55418.1| Phage related DNA methylase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212994752|gb|EEB55395.1| Phage related DNA methylase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 410

 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 41/62 (66%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           LHPT KP  L+ R +V+S++PGDI+LDPF GSG++    ++  R    IE+   ++D+  
Sbjct: 319 LHPTMKPVELMERAIVNSSRPGDIVLDPFSGSGSTLIACERTGRICRTIELDSKFVDVTI 378

Query: 263 KR 264
           KR
Sbjct: 379 KR 380


>gi|217967679|ref|YP_002353185.1| DNA methylase N-4/N-6 domain protein [Dictyoglomus turgidum DSM
           6724]
 gi|217336778|gb|ACK42571.1| DNA methylase N-4/N-6 domain protein [Dictyoglomus turgidum DSM
           6724]
          Length = 1015

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 43/64 (67%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PT+  E LL R++ S++  GD+++D F GSGT+ AVA KL+R +IGIEM + +  +   R
Sbjct: 747 PTENSEILLKRVIESTSNQGDLVMDFFLGSGTTTAVAHKLKRKWIGIEMGEHFWTVVLPR 806

Query: 265 IASV 268
           +  V
Sbjct: 807 MKKV 810


>gi|167747634|ref|ZP_02419761.1| hypothetical protein ANACAC_02355 [Anaerostipes caccae DSM 14662]
 gi|167652996|gb|EDR97125.1| hypothetical protein ANACAC_02355 [Anaerostipes caccae DSM 14662]
          Length = 322

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 115/260 (44%), Gaps = 38/260 (14%)

Query: 23  IIKGN--SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +I+GN   +S LE     S+D I  D PY L+          SL     D    F+S++ 
Sbjct: 83  LIQGNGRDLSFLED---NSIDAIITDHPYLLK---------KSLKGGNRD----FASYDL 126

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVI------GSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
           +  +T+  L    RVLK    L          +Y  ++++  M +   F     + WRK 
Sbjct: 127 F-QYTQQDLDEKFRVLKKGHFLVEFLPEENGDNYEYLYQVKAMAKESGFEYYAKVAWRKG 185

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR-----SDWLIPIC 189
             + N  GR+ +N  + L+++    K +      DA K   E  +M+     +  ++P  
Sbjct: 186 TIVAN-TGRKAKNTEDILLFS----KGRARDMRPDAKKDKAE-PEMKHYMSGAKGMLPTA 239

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
              + +   D  ++H ++KP  LL +IL   T   +++LD + GS      A +  R  I
Sbjct: 240 FDIQPISKAD--RVHQSEKPVELLKQILEFVTDKKELVLDQYAGSFALAEAALESERDSI 297

Query: 250 GIEMKQDYIDIATKRIASVQ 269
            IE+ Q+Y +   KRI +V+
Sbjct: 298 SIEISQEYFEEGKKRIENVK 317


>gi|239625054|ref|ZP_04668085.1| predicted protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521440|gb|EEQ61306.1| predicted protein [Clostridiales bacterium 1_7_47FAA]
          Length = 324

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 115/260 (44%), Gaps = 38/260 (14%)

Query: 23  IIKGN--SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +I+GN   +S LE     S+D I  D PY L+          SL     D    F+S++ 
Sbjct: 85  LIQGNGRDLSFLED---NSIDAIITDHPYLLK---------KSLKGGNRD----FASYDL 128

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVI------GSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
           +  +T+  L    RVLK    L          +Y  ++++  M +   F     + WRK 
Sbjct: 129 F-QYTQQDLDEKFRVLKKGHFLVEFLPEENGDNYEYLYQVKAMAKESGFEYYAKVAWRKG 187

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR-----SDWLIPIC 189
             + N  GR+ +N  + L+++    K +      DA K   E  +M+     +  ++P  
Sbjct: 188 TIVAN-TGRKAKNTEDILLFS----KGRARDMRPDAKKDKAE-PEMKHYMSGAKGMLPTA 241

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
              + +   D  ++H ++KP  LL +IL   T   +++LD + GS      A +  R  I
Sbjct: 242 FDIQPISKAD--RVHQSEKPVELLKQILEFVTDKKELVLDQYAGSFALAEAALESERDSI 299

Query: 250 GIEMKQDYIDIATKRIASVQ 269
            IE+ Q+Y +   KRI +V+
Sbjct: 300 SIEISQEYFEEGKKRIENVK 319


>gi|330996254|ref|ZP_08320144.1| DNA (cytosine-5-)-methyltransferase [Paraprevotella xylaniphila YIT
           11841]
 gi|329573758|gb|EGG55349.1| DNA (cytosine-5-)-methyltransferase [Paraprevotella xylaniphila YIT
           11841]
          Length = 233

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 1/81 (1%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           + K+ +++HPTQKP AL + +L +   PGD ILD   GSG+S   A K+   F G E+ +
Sbjct: 140 KRKNEKRIHPTQKPVALYAWLLQNYANPGDKILDTHLGSGSSRIAAYKMGFDFYGTEIDK 199

Query: 256 DYIDIATKRIASVQPLGNIEL 276
           +Y D   KR    + LG I L
Sbjct: 200 EYFDAQEKRFRE-ECLGEIRL 219


>gi|21221931|ref|NP_627710.1| DNA methylase [Streptomyces coelicolor A3(2)]
 gi|4678636|emb|CAB41209.1| putative DNA methylase [Streptomyces coelicolor A3(2)]
          Length = 248

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 108/265 (40%), Gaps = 41/265 (15%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNL------QLNGQLYRPD-------HSLVDAVTDS 71
           +G++++VL+ LP +SV  +  DPPYN          G+  R         H L +   ++
Sbjct: 7   RGDALTVLKSLPDESVQAVITDPPYNSGGRTSSDRTGRTARAKYVTSNSAHDLANFPGEN 66

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
            D+ S    Y ++    L    R    +    V   +         LQ   +     I W
Sbjct: 67  RDQRS----YRSWLTELLTEAYRASTEHAVTMVFTDWRQEPTTSDALQMAGWTWSGTIPW 122

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
            K +  P   G +  +  E +IW       KG   N         D+ +   +   I S 
Sbjct: 123 IKPSSRPRKGGPKQDS--EFIIWG-----VKGSLDN-------TRDLYLPGHY---IASQ 165

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
             + R      +H TQKP  ++ + LV     G  +LDPF GSG++G  A +  R F+G+
Sbjct: 166 PRKGR------VHITQKPVEVMQQ-LVQVCPEGGTVLDPFTGSGSTGVAALREGRHFVGV 218

Query: 252 EMKQDYIDIATKRIASVQPLGNIEL 276
           E+   Y D+A +R+ +     + EL
Sbjct: 219 ELSAHYADVAEERLRAELTKDDFEL 243


>gi|320159413|ref|YP_004172637.1| putative N-4 cytosine-specific methyltransferase [Anaerolinea
           thermophila UNI-1]
 gi|319993266|dbj|BAJ62037.1| putative N-4 cytosine-specific methyltransferase [Anaerolinea
           thermophila UNI-1]
          Length = 291

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/306 (22%), Positives = 125/306 (40%), Gaps = 68/306 (22%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +++ G+    L+++P   +DLIF  PPY                D+ ++++      E  
Sbjct: 6   RLMLGDCREKLKEIPDNFIDLIFTSPPY---------------ADSRSNTYGGIKPDEYV 50

Query: 82  DAFTRAWLLACR----RVLKPNGTLW------VIGSYHNIFRIGTMLQ-NLNFWI-LNDI 129
           +     W L       RVLKP GT        V+    + + I  +L+     W+   + 
Sbjct: 51  E-----WFLPISKELLRVLKPTGTFILNIKEKVVNGERHTYVIELILEMRKQGWLWTEEF 105

Query: 130 VWRKSNPMPNFRGRRFQNAHETLI---------------------WASPSPKAKGYT-FN 167
           +W K N  P     RF++A E L+                     WA    K   +T   
Sbjct: 106 IWHKKNSYPGKWPNRFRDAWERLLQFNKQRHFHMYQEEVMIPMGSWADKRLKNLSHTDLV 165

Query: 168 YDALKAANEDVQMRSDWL-------IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
            D  +  +   +  ++W+         +   +   +N++   + P   PE  +       
Sbjct: 166 RDNSRVGSGFGKRVANWIGRNKVYPTNVLHLATETKNRNHSAVFPEDLPEWFIKLF---- 221

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
           T+ GD +LDPF GSGT+  VA+++ R+ IGIE+  +Y  ++ +   S+QP+  +   ++ 
Sbjct: 222 TREGDWVLDPFMGSGTTNRVAQRMGRNSIGIEILPEYFALSQQ---SIQPVLEVPEQLML 278

Query: 281 GKRTEP 286
            +  EP
Sbjct: 279 LEEKEP 284


>gi|284801429|ref|YP_003413294.1| site-specific DNA-methyltransferase (adenine- specific) [Listeria
           monocytogenes 08-5578]
 gi|284994571|ref|YP_003416339.1| site-specific DNA-methyltransferase (adenine- specific) [Listeria
           monocytogenes 08-5923]
 gi|284056991|gb|ADB67932.1| site-specific DNA-methyltransferase (adenine- specific) [Listeria
           monocytogenes 08-5578]
 gi|284060038|gb|ADB70977.1| site-specific DNA-methyltransferase (adenine- specific) [Listeria
           monocytogenes 08-5923]
          Length = 637

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 2/89 (2%)

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           RSD +       E +++ + E    T KPE LL R+L   +  GDIILD F GS T+ AV
Sbjct: 423 RSDEVGHNHEAREEIKHLNLETDFTTPKPERLLQRVLTLGSLEGDIILDFFMGSATTQAV 482

Query: 241 AKKLRRSFIGIEMKQDYID-IATKRIASV 268
           A K++R FIGIE + DYI+ ++  R+  V
Sbjct: 483 AMKMKRRFIGIE-QMDYINSVSIPRLEKV 510


>gi|294861398|gb|ADF45504.1| DNA methylase-like protein [Wolbachia endosymbiont of Culex
           quinquefasciatus]
          Length = 402

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 41/62 (66%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           LHPT KP  L+ R +V+S++PGDI+LDPF GSG++    ++  R    IE+   ++D+  
Sbjct: 311 LHPTMKPVELMERAIVNSSRPGDIVLDPFSGSGSTLIACERTGRICRTIELDSKFVDVTI 370

Query: 263 KR 264
           KR
Sbjct: 371 KR 372


>gi|315924885|ref|ZP_07921102.1| type III restriction-modification system methylation subunit
           [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621784|gb|EFV01748.1| type III restriction-modification system methylation subunit
           [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 582

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 40/62 (64%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           QKPEAL+ RIL  +T  GD++LD   G+GTS A A KL R +IG+E   + ID+   R+ 
Sbjct: 398 QKPEALIKRILEMATDEGDLVLDFHIGTGTSAATAHKLNRKYIGVEQMVNQIDLILPRLQ 457

Query: 267 SV 268
            V
Sbjct: 458 KV 459


>gi|161870247|ref|YP_001599417.1| type III restriction/modification system modification methylase
           [Neisseria meningitidis 053442]
 gi|161595800|gb|ABX73460.1| type III restriction/modification system modification methylase
           [Neisseria meningitidis 053442]
          Length = 371

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 38/62 (61%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           QK E LL RIL + TKP DI+LD F GSGT+ AVA K+ R +I IE      D   KR+ 
Sbjct: 172 QKSEKLLKRILEAHTKPNDIVLDFFGGSGTTAAVAHKMNRQYICIEQIDKQTDTIVKRLN 231

Query: 267 SV 268
            +
Sbjct: 232 KI 233


>gi|316984192|gb|EFV63170.1| DNA methylase family protein [Neisseria meningitidis H44/76]
          Length = 457

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 2/79 (2%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
            ++ L+   G K+  T KPE+LL  ++  +T   DI+LD   GSGT+ AVA K+ R +IG
Sbjct: 242 ATDELKKLFGSKVFTTPKPESLLQYLIQIATSESDIVLDYHLGSGTTAAVAHKMNRQYIG 301

Query: 251 IEMKQDYID-IATKRIASV 268
           IE + DYI+ +A +R+  V
Sbjct: 302 IE-QMDYIETLAVERLKKV 319


>gi|315445346|ref|YP_004078225.1| DNA modification methylase [Mycobacterium sp. Spyr1]
 gi|315263649|gb|ADU00391.1| DNA modification methylase [Mycobacterium sp. Spyr1]
          Length = 352

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 76/181 (41%), Gaps = 40/181 (22%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSW-DK 74
           +++II G+++  L  LP  SVD +   PPY    N   +GQ+    H       D W D 
Sbjct: 9   RNRIIVGDALKKLSGLPDASVDCVITSPPYFSLRNYGADGQIGLERH------VDQWVDH 62

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWV-IGSYHNIF---------------RIGTML 118
            ++     A          RVL P GT W+ +G  ++                 R+   L
Sbjct: 63  LAAISGQVA----------RVLVPTGTYWLNLGDTYSAHQAQGAARKSLLMAPERLALRL 112

Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
           Q   + I N I+W K NPMP     R   AHE +   +  P+   Y F+ DA++  +  V
Sbjct: 113 QRDGWIIRNKIIWAKPNPMPTSIPDRLNTAHEVIYVMARQPQ---YFFDLDAIRVPHVSV 169

Query: 179 Q 179
           +
Sbjct: 170 R 170



 Score = 42.7 bits (99), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           AL      ++     ++LDPF GSGT+   A+   R ++GIE+  D+   A +RI
Sbjct: 280 ALTPTCTCTTGSEAGLVLDPFMGSGTTAVAAQNYGRDWLGIELNPDFAATARQRI 334


>gi|28211560|ref|NP_782504.1| chromosome partitioning parB family protein [Clostridium tetani
           E88]
 gi|28204001|gb|AAO36441.1| chromosome partitioning parB family protein [Clostridium tetani
           E88]
          Length = 357

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 106/252 (42%), Gaps = 43/252 (17%)

Query: 20  KDKIIKGNS--ISVLEKL-PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + ++I G+S      EKL   K  +L+  DPPYN+   G   +  +   D + D   KF 
Sbjct: 113 RHRLICGDSTKFETYEKLMEGKKANLVVTDPPYNVSYEGTAGKIQN---DNMGDK--KFY 167

Query: 77  SF--EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            F   +Y     +        L   G+++V  +           ++  F+     +W K+
Sbjct: 168 EFLLNSYKGMYES--------LADGGSIYVFHADKETVNFRVAFKDAGFFCHQTCIWIKN 219

Query: 135 NPMPNFRGR-RFQNAHE-TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           +P+    GR  +Q  HE  L+   P+   K Y            D + R+ W     + S
Sbjct: 220 SPV---LGRCDYQYNHEPILVGWKPTAGHKFYG-----------DRKQRTTWNFDRPTKS 265

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
                    K HPT KP AL++  + +S+    I+LDPF GSG++    ++  R    IE
Sbjct: 266 ---------KYHPTMKPIALVAYPITNSSLTNSIVLDPFGGSGSTLIACEQTDRICYTIE 316

Query: 253 MKQDYIDIATKR 264
           + + Y D+  KR
Sbjct: 317 LDEKYADVIVKR 328


>gi|309378869|emb|CBX22574.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 452

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 2/79 (2%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
            ++ L+   G K+  T KPE+LL  ++  +T   DI+LD   GSGT+ AVA K+ R +IG
Sbjct: 242 ATDELKKLFGSKVFTTPKPESLLQYLIQIATSESDIVLDYHLGSGTTAAVAHKMNRQYIG 301

Query: 251 IEMKQDYID-IATKRIASV 268
           IE + DYI+ +A +R+  V
Sbjct: 302 IE-QMDYIETLAVERLKKV 319


>gi|304387298|ref|ZP_07369491.1| type III restriction/modification enzyme [Neisseria meningitidis
           ATCC 13091]
 gi|304338681|gb|EFM04798.1| type III restriction/modification enzyme [Neisseria meningitidis
           ATCC 13091]
          Length = 457

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 2/79 (2%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
            ++ L+   G K+  T KPE+LL  ++  +T   DI+LD   GSGT+ AVA K+ R +IG
Sbjct: 242 ATDELKKLFGSKVFTTPKPESLLQYLIQIATSESDIVLDYHLGSGTTAAVAHKMNRQYIG 301

Query: 251 IEMKQDYID-IATKRIASV 268
           IE + DYI+ +A +R+  V
Sbjct: 302 IE-QMDYIETLAVERLKKV 319


>gi|220930514|ref|YP_002507423.1| DNA methylase N-4/N-6 domain protein [Clostridium cellulolyticum
           H10]
 gi|220000842|gb|ACL77443.1| DNA methylase N-4/N-6 domain protein [Clostridium cellulolyticum
           H10]
          Length = 359

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 87/204 (42%), Gaps = 50/204 (24%)

Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
           +R+   LQ   +++  DI+W K N MP     R   AHE L   S   K K Y F+ +++
Sbjct: 156 WRVAFALQADGWYLRMDIIWNKLNCMPESANDRPTKAHEYLFLLS---KDKNYYFDNESI 212

Query: 172 KA-------------------ANEDVQMRSDWLI-----------------PICSGSERL 195
           K                     N+  +   +W I                 P+ +G +  
Sbjct: 213 KEYCVNGDPNPPRGSEGVLGNPNKGRRGPGNWKIKSVGLPGESANRGTPSVPV-AGKKEF 271

Query: 196 RNKDG---------EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           RNK            + H    P  L+   +++    G  +LD F GSGT+  VA++  R
Sbjct: 272 RNKRSVWHVATDKLREAHFATFPPKLIEPCIIAGCPVGGTVLDIFMGSGTTAMVAEQNNR 331

Query: 247 SFIGIEMKQDYIDIATK-RIASVQ 269
           ++IG E+  +YI+IA + R+++VQ
Sbjct: 332 NYIGFELNPEYIEIANRTRLSNVQ 355


>gi|304439723|ref|ZP_07399622.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371798|gb|EFM25405.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 383

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 114/262 (43%), Gaps = 43/262 (16%)

Query: 40  VDLIFADPPYNL--QLNGQLYRPDHSLV-DAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
           VDLI+ DPP+N       ++   D  +  D   D+ DK    + +  +    L   + +L
Sbjct: 63  VDLIYIDPPFNTGKTFGIEIDAGDEKIYKDCYEDNLDK----DEFLLWMYEILTRLKNLL 118

Query: 97  KPNGTLWVIGSYHNIFRIGTMLQNL----NFWILNDIVWRKSNPMPNFRGRRFQNAHETL 152
           K  G++++   Y     +  ++  +    NF  +N+I+W  S        + F   H+ +
Sbjct: 119 KETGSIFLHVDYRTSSELKLIMDKVFGDSNF--VNEIIW--SYKSGGAGKKSFSKKHDNI 174

Query: 153 IWASPSPKAKGYT-------------FNYDALKAANED------VQMRSDWLIPIC--SG 191
           ++ S   + K +              +N+  +K   +       V M+  W I +   + 
Sbjct: 175 LFYSKDYRQKIFKPLKEKSYNRDFKPYNFKGVKEYKDHLGYYTMVNMKDVWNIDMVGRTS 234

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           SER++       +P+QKP  LL RI+ S+T+ G  +LD F GSG++   A  L+R +I  
Sbjct: 235 SERVK-------YPSQKPFELLRRIIESTTEEGMTVLDIFGGSGSTAKAASILKRHYIHG 287

Query: 252 EMKQDYIDIATKRIASVQPLGN 273
           ++ +    +A + +       N
Sbjct: 288 DISEYSCSVAREYLEDATYFSN 309


>gi|3914078|sp|O59647|MTMW_METWO RecName: Full=Modification methylase MwoI; Short=M.MwoI; AltName:
           Full=N-4 cytosine-specific methyltransferase MwoI
 gi|2961238|gb|AAC05700.1| MwoI DNA modification methyltransferase [Methanothermobacter
           wolfeii]
          Length = 668

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 113/284 (39%), Gaps = 64/284 (22%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKF 75
           K KI+ G+  S L  L   S+ +    PPY    +    GQ+ R                
Sbjct: 3   KGKILFGDVFSALRCLEDNSISVALTSPPYWRQRDYGFKGQIGRE--------------- 47

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWV---------IGSYHNI---FRIGTMLQNLNF 123
            + E Y           R  LK +G  ++          G  H +   +R+   +    +
Sbjct: 48  KTPEEYIGRLIVIFRELRAKLKDDGVFFLNIGDKYKNRYGKSHLLQIPYRLAAHMIKDGW 107

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
            +L+ I+W K N MP+    RF N +E ++    S +   YT  +  LK   +  + +  
Sbjct: 108 KLLDIIIWYKPNHMPSSVKDRFTNTYEPVLVFGKSDE-NIYTKKHPVLKIPLQQTKWK-- 164

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILV-SSTKPGDIILDPFFGSGTSGAVAK 242
                               H    PE L+S +L   + K GD ILDPF G+GT+GAV K
Sbjct: 165 --------------------HTAVFPEKLVSSLLSRCNLKDGDYILDPFAGTGTTGAVVK 204

Query: 243 KLRRSF-------IGIEMKQDYIDIATKR--IASVQPLGNIELT 277
           K++          I IE  + ++DI T+R  I  ++ L + E T
Sbjct: 205 KMKYQLYPKDLNVILIEKGKKFLDIITERTGIKEIKELKSSEYT 248


>gi|94268294|ref|ZP_01291133.1| DNA methylase N-4/N-6 [delta proteobacterium MLMS-1]
 gi|93451668|gb|EAT02451.1| DNA methylase N-4/N-6 [delta proteobacterium MLMS-1]
          Length = 622

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 45/66 (68%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +PTQKPEA+L RI+ +S+  GD++ D F GSGT+ AVA+KL R +I  ++ +  +    K
Sbjct: 363 YPTQKPEAILERIIKASSNEGDLVADFFCGSGTTAAVAEKLGRRWICTDLGKFAVHTTRK 422

Query: 264 RIASVQ 269
           R+  VQ
Sbjct: 423 RMIGVQ 428


>gi|311111790|ref|YP_003983012.1| adenine specific DNA methylase [Rothia dentocariosa ATCC 17931]
 gi|310943284|gb|ADP39578.1| adenine specific DNA methylase [Rothia dentocariosa ATCC 17931]
          Length = 413

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 130/309 (42%), Gaps = 53/309 (17%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNL-------------------QLNGQLYRPD-- 61
           +++ ++++ L +LP+ S  +I+ DPP+N                    Q  G   R    
Sbjct: 32  VVQADNLAYLSELPSASFTVIYIDPPFNTGKTQTRRTLKTAPAADGEEQGKGNGNRTGFQ 91

Query: 62  -HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
             S   A+        +FE Y AF    +    R+L  +GTL++   +  +     M   
Sbjct: 92  GKSYTSALQTLASYHDAFEDYWAFLEPRIRQAHRLLTEDGTLYLHLDWREVHYAKVMCDM 151

Query: 121 L--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA----- 173
           +      +N+I+W       +   +R+   H+ ++    +P+   Y FN DA+       
Sbjct: 152 IFGRDCFINEIIWAYDYGAKS--TKRWPTKHDNILMYVKNPQE--YYFNADAVDREPYMA 207

Query: 174 ---ANEDVQMRSD-----WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
                E+   R       W   I S +   + K G   +PTQKP  LL R++ +S++PGD
Sbjct: 208 PGLVTEEKAARGKLPTDVWWHTIVSPTG--KEKTG---YPTQKPLGLLKRMIAASSRPGD 262

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
            +LD F GSGT+GA A  L R F+ ++     I++  KR+       N++       R  
Sbjct: 263 WVLDFFAGSGTTGAAAAALGRRFVCVDQNPPAIEVMAKRL-------NVDAESFADYRGV 315

Query: 286 PRVAFNLLV 294
           PR A  L  
Sbjct: 316 PRGAAVLFT 324


>gi|307638054|gb|ADN80504.1| type III restriction-modification system methylation subunit
           [Helicobacter pylori 908]
 gi|325996659|gb|ADZ52064.1| Type III restriction-modification system methylation subunit
           [Helicobacter pylori 2018]
 gi|325998249|gb|ADZ50457.1| Type III restriction-modification system methylation subunit
           [Helicobacter pylori 2017]
          Length = 652

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 62/121 (51%), Gaps = 4/121 (3%)

Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD-WLIPICSGSERLRNKDGEKL 203
            +N+HE +            T   + + A N      SD W   + +G   +  + G  L
Sbjct: 410 LKNSHENIKIIRTDFNRNTDTARIELVSAKNNQSVFLSDIWKKIVTTGG--VAQEGGVIL 467

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
              +KPE LL  IL S+T   D++LD F GSGT+ AVA K++R +IGIE + DYI+  TK
Sbjct: 468 KNGKKPEHLLEIILRSATNENDLVLDFFAGSGTTCAVAHKMKRRYIGIE-QMDYIETITK 526

Query: 264 R 264
            
Sbjct: 527 E 527


>gi|194015332|ref|ZP_03053948.1| DNA methylase [Bacillus pumilus ATCC 7061]
 gi|194012736|gb|EDW22302.1| DNA methylase [Bacillus pumilus ATCC 7061]
          Length = 265

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 113/275 (41%), Gaps = 56/275 (20%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD--SWDKFSSF 78
           ++I + + +  ++ +P +SVDLI  D PY                   TD   WDK    
Sbjct: 12  NRIYQMDCLEGMKLIPDESVDLILCDLPY-----------------GTTDVKRWDKIIPI 54

Query: 79  EAYDAFTRAWLLACRRVLKPNG----------TLWVIGSYHNIFRI--------GTMLQN 120
           E      + W    +R++K  G          T +++ S  ++FR         G    N
Sbjct: 55  E------KLWE-QYKRIIKETGNVVLFGSQPFTSYLVNSNPSMFRYEWIWDKTKGANFLN 107

Query: 121 LNFWIL----NDIVWRKSNPMPNFRGR--RFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
            N   L    N +V+ K    PN +G    F    E   +       KG  FN  +L+  
Sbjct: 108 SNHQPLKVHENILVFSKLPASPNKKGTATYFPQKTEGKEYKVKRSSHKGEIFNGGSLRDN 167

Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
            E V   ++   P+   S +   KD + +HPTQKP  +   ++ + T   DI+LD   GS
Sbjct: 168 FEKV---NEGRHPV---SIQTFLKDKDNIHPTQKPVEMCEYLIRTYTDQSDIVLDNCMGS 221

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           GT+   +   +R +IG E    +  +A KR+  VQ
Sbjct: 222 GTTAVASIISQRKWIGFETDPTFYQLANKRLEQVQ 256


>gi|332968528|gb|EGK07589.1| site-specific DNA-methyltransferase (adenine-specific) [Kingella
           kingae ATCC 23330]
          Length = 586

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 2/70 (2%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G KL   +KPE L+ RI+  +T   DI+LD   GSGT+ AVA K+ R +IGIE + DYI+
Sbjct: 387 GVKLKNGKKPEKLIKRIIELTTNENDIVLDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIE 445

Query: 260 -IATKRIASV 268
            +A +R+  V
Sbjct: 446 TLAVERLKKV 455


>gi|320089235|emb|CBY98988.1| K07319 putative adenine-specific DNA-methyltransferase [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
          Length = 145

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 44/71 (61%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            G + HPT+KP   L  ++ S T PG I+LDPF GSG++   A +  R +IGIE+ + Y 
Sbjct: 59  SGNRHHPTEKPVTSLQPLIESFTHPGAIVLDPFAGSGSTCVAALQAGRRYIGIELLERYH 118

Query: 259 DIATKRIASVQ 269
               +R+A+V+
Sbjct: 119 RAGQQRLAAVR 129


>gi|330989854|gb|EGH87957.1| DNA methylase N-4/N-6 domain-containing protein [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 264

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           RL+N+     HPTQKP AL+  ++ + T  GDI+LD   GSGT+G       R FIGIE 
Sbjct: 178 RLKNQ-----HPTQKPVALMEYLIRTYTNEGDIVLDNCMGSGTTGVACIHSGRRFIGIER 232

Query: 254 KQDYIDIATKRIASV-----QPLGNIEL 276
            +     A+ RIAS       P+  IEL
Sbjct: 233 DEKIFGTASDRIASAIALRNTPVPQIEL 260


>gi|257090388|ref|ZP_05584749.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|256999200|gb|EEU85720.1| conserved hypothetical protein [Enterococcus faecalis CH188]
          Length = 398

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 103/244 (42%), Gaps = 41/244 (16%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           NS+ V + +  K  DL+  DPPYN+   G+    +   +   +   ++F SF  Y+AF+ 
Sbjct: 167 NSLEVEKLMGNKKADLLITDPPYNVAYEGK--GKEALTIKNDSKETNEFHSF-LYEAFS- 222

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
               A    +K   + +V  +   +    T L+   F +  +++W K++ + + +   ++
Sbjct: 223 ----AAINNMKLGSSFYVWYASSEVVNFHTALEEAGFLVKQELIWNKNSMVLSRQDYHWK 278

Query: 147 NAHETLIWASP------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +      WAS       S + +    N+D                 P  +          
Sbjct: 279 HEPCLYGWASGGSHSWYSDRKQTTILNFDR----------------PTVN---------- 312

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K HPT KP AL    + +S+K GD ILD F GSGT+    ++  R    +E+   Y+D+
Sbjct: 313 -KEHPTMKPVALFDYQIKNSSKRGDCILDLFGGSGTTLIACEQNEREAYLMELDPRYVDV 371

Query: 261 ATKR 264
              R
Sbjct: 372 IIAR 375


>gi|260664656|ref|ZP_05865508.1| DNA methylase [Lactobacillus jensenii SJ-7A-US]
 gi|260561721|gb|EEX27693.1| DNA methylase [Lactobacillus jensenii SJ-7A-US]
          Length = 480

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 2/74 (2%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +N+ G      +KPE LL RI+   T  GDI+LD F GS T+ AVA KL R FIG+E + 
Sbjct: 278 QNQGGVSFTNAKKPEQLLKRIINLCTNEGDIVLDCFMGSATTQAVALKLNRQFIGVE-QM 336

Query: 256 DYID-IATKRIASV 268
           DYI+ I+  R+  V
Sbjct: 337 DYINTISVPRLQKV 350


>gi|294341862|emb|CAZ90291.1| putative DNA methylase N-4/N-6 [Thiomonas sp. 3As]
          Length = 519

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 38/50 (76%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           T KPEAL+ RI+  ++ PGD++LD F GSGT+ AVA K+ R +IGIEM +
Sbjct: 314 TPKPEALIQRIIHIASNPGDLVLDSFLGSGTTAAVAHKMGRRWIGIEMGE 363


>gi|15612349|ref|NP_224002.1| type II DNA modification (methyltransferase [Helicobacter pylori
           J99]
 gi|4155888|gb|AAD06858.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
           pylori J99]
          Length = 649

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 41/63 (65%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           TQKPE LL RI+ +S+    I+ D F GSGT+ AVA KL+R +IG+EM + +  +   R+
Sbjct: 473 TQKPEKLLERIIKASSNENSIVCDFFAGSGTTCAVAHKLKRKYIGVEMGEHFESVILPRL 532

Query: 266 ASV 268
             V
Sbjct: 533 KKV 535


>gi|119513181|ref|ZP_01632229.1| DNA methyltransferase [Nodularia spumigena CCY9414]
 gi|119462168|gb|EAW43157.1| DNA methyltransferase [Nodularia spumigena CCY9414]
          Length = 558

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 46/72 (63%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +PTQKP++LL RI+  S+   DI+LDPF G GT+   A+KL R++IGI++    I +  K
Sbjct: 294 YPTQKPQSLLERIIQVSSNKDDIVLDPFCGCGTAIHAAEKLGRNWIGIDITHLAIALIEK 353

Query: 264 RIASVQPLGNIE 275
           R+    P   IE
Sbjct: 354 RLRDAFPSKFIE 365


>gi|25011171|ref|NP_735566.1| hypothetical protein gbs1120 [Streptococcus agalactiae NEM316]
 gi|23095570|emb|CAD46779.1| unknown [Streptococcus agalactiae NEM316]
          Length = 415

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 118/274 (43%), Gaps = 39/274 (14%)

Query: 13  QNSIFEW-KDKIIKGNSISV--LEKL-PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
           Q S+++  K +++ G++ +   LE+L      DL   DPPYN+   G+         +A+
Sbjct: 148 QGSLYQLGKHRLMCGDATNPEHLERLLDGVEADLYLTDPPYNVAYQGKT-------SEAL 200

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV-------IGSYHNIFRIGTMLQNL 121
           T   D+  +  A+  F  A   A    LK     ++       +     I   G + +  
Sbjct: 201 TIQNDQMKA-TAFQEFLTAAFQAVDTHLKAGAAFYIWHADSERLSFSKAISATGWLEKQC 259

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY---TFNYDALKAANEDV 178
             W+ N  V  + +         +Q  HE  ++    P AK Y    F+   +  ++ + 
Sbjct: 260 LIWVKNSFVLGRQD---------YQWQHEPCLYGW-KPGAKHYFVTDFSLSTVLESSLEG 309

Query: 179 QMRSDWLIPICSGSE-------RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
           + +++ +  I S  E       R+      + HPT KP AL+ R++  S++  D++LD F
Sbjct: 310 KSKAELIALIKSYQEGQPTSILRVNRPQANQEHPTMKPLALIERLVRHSSRQEDVVLDTF 369

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
            GSGT+  V ++L R    +E+   Y+    KR 
Sbjct: 370 AGSGTTLMVCEQLNRVNYSMELDPKYVQGILKRF 403


>gi|217980181|ref|YP_002364231.1| DNA methylase N-4/N-6 domain protein [Thauera sp. MZ1T]
 gi|217508352|gb|ACK55137.1| DNA methylase N-4/N-6 domain protein [Thauera sp. MZ1T]
          Length = 305

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 15/159 (9%)

Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
           R    +Q+ ++ + ND VW K NP+P+    R   +HE +       K++ Y FN D + 
Sbjct: 158 RFAIAMQDKDWIVRNDNVWLKPNPIPDQVRDRCSMSHEYMFHLV---KSRWYFFNKDLVG 214

Query: 173 AANEDVQM---RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
             +E   +      W IP    S          +H  +  E L+   ++S+T    ++LD
Sbjct: 215 RKSETGSILPPPDTWEIPPARRSH---------MHKARFSEELVRIPILSTTPQSGVVLD 265

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           PF GSGTS   A+K     IGI++K+D+     + I  +
Sbjct: 266 PFGGSGTSLVFARKHGFRAIGIDIKKDFCQSMVEHIGEL 304


>gi|294648628|ref|ZP_06726091.1| site-specific DNA-methyltransferase (adenine-specific)
           [Acinetobacter haemolyticus ATCC 19194]
 gi|292825504|gb|EFF84244.1| site-specific DNA-methyltransferase (adenine-specific)
           [Acinetobacter haemolyticus ATCC 19194]
          Length = 377

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 198 KDGEKLHPT-QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           K+G+ L P  +KPE LL +I+  +T  GDI+LD   GSGT+ AVA K+ R +IGIE    
Sbjct: 181 KEGDVLFPNGKKPEQLLKKIIELATDEGDIVLDYHLGSGTTCAVAHKMNRRWIGIEQMNY 240

Query: 257 YIDIATKRIASV 268
             DI  KR+  V
Sbjct: 241 IEDITLKRLTKV 252


>gi|319644069|ref|ZP_07998628.1| hypothetical protein HMPREF9011_04231 [Bacteroides sp. 3_1_40A]
 gi|317384417|gb|EFV65385.1| hypothetical protein HMPREF9011_04231 [Bacteroides sp. 3_1_40A]
          Length = 112

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 43/69 (62%)

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           +K G   HPTQKP AL+  ++ + T  GD++LD   GSGT+   A +  R +IG E++  
Sbjct: 24  HKTGAFYHPTQKPVALIEYLIRTYTNEGDVVLDNCIGSGTTAIAAIRTGRHYIGFEIEPT 83

Query: 257 YIDIATKRI 265
           Y +IA +RI
Sbjct: 84  YCEIAGRRI 92


>gi|238855822|ref|ZP_04646112.1| twin-argninine leader-binding protein DmsD [Lactobacillus jensenii
           269-3]
 gi|282931511|ref|ZP_06337013.1| putative type III restriction-modification system HindVIP enzyme
           mod [Lactobacillus jensenii 208-1]
 gi|238831559|gb|EEQ23906.1| twin-argninine leader-binding protein DmsD [Lactobacillus jensenii
           269-3]
 gi|281304363|gb|EFA96463.1| putative type III restriction-modification system HindVIP enzyme
           mod [Lactobacillus jensenii 208-1]
          Length = 480

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 2/74 (2%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +N+ G      +KPE LL RI+   T  GDI+LD F GS T+ AVA KL R FIG+E + 
Sbjct: 278 QNQGGVSFTNAKKPEQLLKRIINLCTNEGDIVLDCFMGSATTQAVALKLNRQFIGVE-QM 336

Query: 256 DYID-IATKRIASV 268
           DYI+ I+  R+  V
Sbjct: 337 DYINTISVPRLQKV 350


>gi|261400318|ref|ZP_05986443.1| type III restriction/modification enzyme, methylase subunit
           [Neisseria lactamica ATCC 23970]
 gi|269209938|gb|EEZ76393.1| type III restriction/modification enzyme, methylase subunit
           [Neisseria lactamica ATCC 23970]
          Length = 701

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 2/79 (2%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
            ++ L+   G K+  T KPE+LL  ++  +T   DI+LD   GSGT+ AVA K+ R +IG
Sbjct: 486 ATDELKKLFGSKVFTTPKPESLLQYLIQIATSESDIVLDYHLGSGTTAAVAHKMNRQYIG 545

Query: 251 IEMKQDYID-IATKRIASV 268
           IE + DYI+ +A +R+  V
Sbjct: 546 IE-QMDYIETLAVERLKKV 563


>gi|224436923|ref|ZP_03657904.1| type III restriction/modification enzyme, methylase subunit
           [Helicobacter cinaedi CCUG 18818]
 gi|313143394|ref|ZP_07805587.1| adenine specific DNA methyltransferase [Helicobacter cinaedi CCUG
           18818]
 gi|313128425|gb|EFR46042.1| adenine specific DNA methyltransferase [Helicobacter cinaedi CCUG
           18818]
          Length = 679

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 48/68 (70%), Gaps = 2/68 (2%)

Query: 198 KDGE-KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           K+G+ KL   +KPEALL RI+  ST+  D+++D F GSGT+ AVA K+ R +IGIE + D
Sbjct: 448 KEGQVKLKNGKKPEALLKRIIEISTQENDLVMDFFAGSGTTLAVAMKMNRRWIGIE-QMD 506

Query: 257 YIDIATKR 264
           YI+  TK 
Sbjct: 507 YIESITKE 514


>gi|311741947|ref|ZP_07715757.1| DNA (cytosine-5-)-methyltransferase [Aeromicrobium marinum DSM
           15272]
 gi|311314440|gb|EFQ84347.1| DNA (cytosine-5-)-methyltransferase [Aeromicrobium marinum DSM
           15272]
          Length = 344

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 105/318 (33%), Gaps = 79/318 (24%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQ-------LNGQ--------------------- 56
            GN+  +L +LP  SVD +  DPPY +        L+G+                     
Sbjct: 23  HGNAFDLLRELPDASVDAVVTDPPYGIATPPGLKALHGRQVTCRTCGDTTAPTWVLCQTC 82

Query: 57  --------LYRPD---HSLVDAVTDSWDKFSSFEAYDAFTRAW--LLACR--RVLKPNGT 101
                   L  P    H   +A T         +      + W  LL  +  RVLKP G 
Sbjct: 83  LDIQRDVLLTEPSMLGHVAPNAHTTGTHTRGLADCDPGLLQRWAELLGTQLLRVLKPGGH 142

Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
             + G+     R+ T L+N  F + + I W         R          LI     P  
Sbjct: 143 ALLFGAPKTSHRVTTGLENAGFDVRDQITWIHQGA--GARSTGILAVQSELIAVVRRPMI 200

Query: 162 KGYTFNYDALKAA-------------------------NEDVQMRSDWLIP--------- 187
                N+D                                DV  R+  ++          
Sbjct: 201 GTRAMNHDLFGTGVLNTAGAASLAELPTTPTNVVAGEPGPDVFARAQQMLHDTVAFPPAV 260

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           +C  + +         HPT KP AL+  ++  +T PG  +LDPF GSGT+   A    R 
Sbjct: 261 VCKKATKGERTFTSGTHPTVKPLALMRYLVELATPPGGTVLDPFAGSGTTVEAAIVQGRP 320

Query: 248 FIGIEMKQDYIDIATKRI 265
            I  E    Y+ + T+RI
Sbjct: 321 VIAFEADSAYLPLITERI 338


>gi|71274670|ref|ZP_00650958.1| DNA methylase N-4/N-6 [Xylella fastidiosa Dixon]
 gi|71901601|ref|ZP_00683682.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
 gi|170730091|ref|YP_001775524.1| site-specific DNA-methyltransferase [Xylella fastidiosa M12]
 gi|71164402|gb|EAO14116.1| DNA methylase N-4/N-6 [Xylella fastidiosa Dixon]
 gi|71728649|gb|EAO30799.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
 gi|167964884|gb|ACA11894.1| site-specific DNA-methyltransferase [Xylella fastidiosa M12]
          Length = 173

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 78/178 (43%), Gaps = 32/178 (17%)

Query: 94  RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR--RFQNAHET 151
           RV +P G L V   +  +  +   +Q+  +     +VW K+   P  R +  RF++  E 
Sbjct: 20  RVTRPGGVLLVFTDWRMLPTLTDAVQSAGWAWQGIVVWDKT---PACRPQLGRFRSQAEF 76

Query: 152 LIWASP---SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
           ++WAS    +PKA   T                     P+  G         EK H   K
Sbjct: 77  IVWASCGLMNPKAHPVT---------------------PV--GVFATGTAPREKRHQVGK 113

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           P AL+   L+    P   +LDPF GSGT+G  A +    FIG+E+   Y D+A +R+A
Sbjct: 114 PLALMEH-LIKIVPPTSTVLDPFAGSGTTGVAALRAGHQFIGMEISPWYCDVAKQRLA 170


>gi|99034523|ref|ZP_01314503.1| hypothetical protein Wendoof_01000687 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 198

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 41/62 (66%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           LHPT KP  L+ R +V+S++PGDI+LDPF GSG++    ++  R    IE+   ++D+  
Sbjct: 111 LHPTMKPVELMERAIVNSSRPGDIVLDPFSGSGSTLIACERTGRICRTIELDPTFVDVTI 170

Query: 263 KR 264
           KR
Sbjct: 171 KR 172


>gi|256003547|ref|ZP_05428537.1| ParB domain protein nuclease [Clostridium thermocellum DSM 2360]
 gi|255992571|gb|EEU02663.1| ParB domain protein nuclease [Clostridium thermocellum DSM 2360]
 gi|316941388|gb|ADU75422.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum DSM
           1313]
          Length = 417

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 104/249 (41%), Gaps = 28/249 (11%)

Query: 22  KIIKGNS--ISVLEKL-PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +++ G+S  +S ++KL   K    +F DPP+N+        P       + D      S 
Sbjct: 170 RLMCGDSAMLSDVQKLMDGKKARFVFTDPPWNVDYGSDTRHPSWKPRQILNDR----MST 225

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           E + AF        R V +     +V+ S      +   L+   +   + I+W+K + + 
Sbjct: 226 EEFGAFLLRAFNCMREVSEAGCMTYVVMSAQEWGNVMNALREAGYHWSSTIIWKKDSLV- 284

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
               + +   +E  IW         Y +         +D +    W IP    SE     
Sbjct: 285 -LSRKDYHTQYEP-IW---------YGWLEGTRLCPLKDRKQSDVWEIPRPKVSEE---- 329

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPT KP +L+++ +++S++ GD+ LD F GSGT+   A++  R    +E+   Y 
Sbjct: 330 -----HPTMKPVSLVAKAMLNSSRAGDLALDLFGGSGTTMIAAQQTGRVCFMMELDPKYC 384

Query: 259 DIATKRIAS 267
           D+  KR  S
Sbjct: 385 DVIVKRYVS 393


>gi|257065860|ref|YP_003152116.1| DNA methylase N-4/N-6 domain-containing protein [Anaerococcus
           prevotii DSM 20548]
 gi|256797740|gb|ACV28395.1| DNA methylase N-4/N-6 domain protein [Anaerococcus prevotii DSM
           20548]
          Length = 636

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 40/61 (65%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           KPE+LL  I+  STK  DIILD F GSGT+ AV+ K+RR +IGIE      D+  +R+  
Sbjct: 452 KPESLLKSIIEISTKEDDIILDFFLGSGTTAAVSHKMRRHYIGIEQMNYINDLTIERLKK 511

Query: 268 V 268
           V
Sbjct: 512 V 512


>gi|145627987|ref|ZP_01783788.1| putative type III restriction/modification system modification
           methylase [Haemophilus influenzae 22.1-21]
 gi|144979762|gb|EDJ89421.1| putative type III restriction/modification system modification
           methylase [Haemophilus influenzae 22.1-21]
          Length = 202

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 2/63 (3%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRI 265
           +KPEAL+ RI+  +T   DI+LD   GSGT+ AVA K+ R +IGIE + DYI+ +A +R+
Sbjct: 3   KKPEALIKRIIELTTNESDIVLDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIETLAVERL 61

Query: 266 ASV 268
             V
Sbjct: 62  KKV 64


>gi|88706703|ref|ZP_01104405.1| DNA methylase N-4/N-6 [Congregibacter litoralis KT71]
 gi|88699024|gb|EAQ96141.1| DNA methylase N-4/N-6 [Congregibacter litoralis KT71]
          Length = 438

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 107/237 (45%), Gaps = 14/237 (5%)

Query: 29  ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
           I+VL  +   +  L  +DPPYN+   G +   D +       +  + +  E  D F R  
Sbjct: 181 IAVL--MSGATATLHISDPPYNVPTQGHISVGDDAGHGDFAMAAGEMTPEEFTD-FLRQS 237

Query: 89  LLACRRVLKPNGTL-WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
           LL    V   NG+L ++   + +I  +   +  +   ++N  VW K+N      G  +++
Sbjct: 238 LLGLSSVCG-NGSLHYIFMDWRHIRELLEAVDTVYAHLINLCVWAKTN---GGMGSFYRS 293

Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
            HE +  A    K      N   L A     + R++        +  +  ++   +HPT 
Sbjct: 294 QHELIAVAK---KGSEPHINNVQLGANG---RYRTNVWRYAGMNTFSVDREETLAVHPTV 347

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           KP A++   ++ ++  GDI+LD F GSGT+   A++  R   G+E+   Y D+A +R
Sbjct: 348 KPTAMIIDAILDASNLGDIVLDGFLGSGTTLLAAEQTGRVCRGMELDPRYADVAIRR 404


>gi|283786302|ref|YP_003366167.1| prophage DNA methylase [Citrobacter rodentium ICC168]
 gi|282949756|emb|CBG89375.1| putative prophage DNA methylase [Citrobacter rodentium ICC168]
          Length = 243

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 48/102 (47%), Gaps = 13/102 (12%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
           YD+      DVQ  S              +K     HPTQKP AL+  ++ + + PGD +
Sbjct: 151 YDSTSRYPRDVQFFSS-------------DKQTGNFHPTQKPLALVQYLIETYSNPGDTV 197

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           LD   GSGT+G    ++ R FIGIE       +A  RI + Q
Sbjct: 198 LDFTMGSGTAGVACLRVGRCFIGIEKDTSIFQVARHRIGTKQ 239


>gi|307701753|ref|ZP_07638767.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
 gi|307613011|gb|EFN92266.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
          Length = 441

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 126/299 (42%), Gaps = 46/299 (15%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT------DS 71
           +++  G +++ L  L    A  VD ++ DPPYN Q +       H     +       D 
Sbjct: 47  NRLYVGENLAALGALAGEFAGGVDCVYIDPPYNSQADYVAKMALHGDGGQILEQKQYGDR 106

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDI 129
           WD       Y  F    L A R +L   G+++V   +H    +  +   +  +  +LN+I
Sbjct: 107 WDD----AQYLQFMFERLGALRELLADTGSIFVHCDWHAAASLRLVCDEVFGSRNLLNEI 162

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA--------------N 175
           VW   +   + R    +  H+T+++ + +  A+   F+ DA++                 
Sbjct: 163 VWIYGSGGGSRRRFGRK--HDTILFYAKN--ARRNFFDPDAVRVPYRAAIAPKRRGLFHP 218

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
           E +     W IP      R  N     + +PTQKP A++ R L  +  PG ++LD F GS
Sbjct: 219 EGMVAPDVWDIP------RPPNHATSWVGYPTQKPLAVMERALRGACPPGGLVLDCFAGS 272

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS------VQPLGNIELTVLTGKRTEPR 287
           G++   A  L   FIG+E     + +A KR+ S      V  +G+  L  L  KR  P 
Sbjct: 273 GSTLVAAAGLGLRFIGVECAALGVHLARKRLVSLGASFGVWRVGDTHLMNLGDKRQPPH 331


>gi|159028775|emb|CAO89946.1| pvuIIM [Microcystis aeruginosa PCC 7806]
          Length = 883

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 47/79 (59%)

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           +R   ++G K HP + P+AL   ++   T+PGD++LDPF GS  +G VA+ L R ++  E
Sbjct: 267 QRRCKEEGVKPHPARFPQALPEFVISLCTEPGDLVLDPFAGSNMTGRVAETLERRWLAFE 326

Query: 253 MKQDYIDIATKRIASVQPL 271
           + +DY+  +  R     PL
Sbjct: 327 LNEDYMIASQFRFEQDAPL 345



 Score = 43.1 bits (100), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 42/161 (26%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSFEAYDAF 84
           GNS++++ +LP +SVDLI   PP+ L     + + ++  VDA     W K  + E Y   
Sbjct: 29  GNSLTLMGELPDESVDLICTSPPFAL-----VRKKEYGNVDADDYVEWFKIFAGEFY--- 80

Query: 85  TRAWLLACRRVLKPNGTLWVI--GSYHNIFRIGTMLQ--------------NLNFWILND 128
                    R+LKP G+L +   GS+   F + ++                 L F++  +
Sbjct: 81  ---------RILKPKGSLVIDIGGSWLKGFPVRSLYHFELVIELCKPRLEGGLGFFLAQE 131

Query: 129 IVWRKSNPMP------NFRGRRFQNAHETLIWAS--PSPKA 161
           + W     +P        R  R ++A  T+ W S  P PKA
Sbjct: 132 LFWYNPAKLPTPAEWVTVRRERVKDAVNTVWWLSKEPHPKA 172


>gi|306818253|ref|ZP_07451983.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris ATCC
           35239]
 gi|304648992|gb|EFM46287.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris ATCC
           35239]
          Length = 451

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 126/299 (42%), Gaps = 46/299 (15%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV------TDS 71
           +++  G +++ L  L    A  VD ++ DPPYN Q +       H     +       D 
Sbjct: 47  NRLYVGENLAALGALAGEFAGGVDCVYIDPPYNSQADYVAKMALHGDGGQILEQKQYGDR 106

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDI 129
           WD       Y  F    L A R +L   G+++V   +H    +  +   +  +  +LN+I
Sbjct: 107 WDD----AQYLQFMFERLGALRELLADTGSIFVHCDWHAAASLRLVCDEVFGSRNLLNEI 162

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA--------------N 175
           VW   +   + R    +  H+T+++ + +  A+   F+ DA++                 
Sbjct: 163 VWIYGSGGGSRRRFGRK--HDTILFYAKN--ARRNFFDPDAVRVPYRAAIAPKRRGLFHP 218

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
           E +     W IP      R  N     + +PTQKP A++ R L  +  PG ++LD F GS
Sbjct: 219 EGMVAPDVWDIP------RPPNHATSWVGYPTQKPLAVMERALRGACPPGGLVLDCFAGS 272

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS------VQPLGNIELTVLTGKRTEPR 287
           G++   A  L   FIG+E     + +A KR+ S      V  +G+  L  L  KR  P 
Sbjct: 273 GSTLVAAAGLGLRFIGVECAALGVHLARKRLVSLGASFGVWRVGDTHLMNLGDKRQPPH 331


>gi|163795354|ref|ZP_02189321.1| DNA methylase N-4/N-6 [alpha proteobacterium BAL199]
 gi|163798208|ref|ZP_02192141.1| DNA methylase N-4/N-6 [alpha proteobacterium BAL199]
 gi|163798303|ref|ZP_02192231.1| DNA methylase N-4/N-6 [alpha proteobacterium BAL199]
 gi|159176416|gb|EDP61003.1| DNA methylase N-4/N-6 [alpha proteobacterium BAL199]
 gi|159176502|gb|EDP61083.1| DNA methylase N-4/N-6 [alpha proteobacterium BAL199]
 gi|159179340|gb|EDP63871.1| DNA methylase N-4/N-6 [alpha proteobacterium BAL199]
          Length = 425

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 104/225 (46%), Gaps = 16/225 (7%)

Query: 42  LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
           ++FADPPYN+ + G +         A+        S EA+  F    L    R  +    
Sbjct: 189 MMFADPPYNVAIAGNVSSTGRHAEFAMASGE---MSPEAFRTFLSDALGLAARYSRAGAV 245

Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
             V   + +I  + ++  ++   +LN  VW K        G  +++ HE LI    + KA
Sbjct: 246 HDVCMDWRHIQDLLSVGTSVYDALLNLCVWDKGI---GGMGSLYRSQHE-LICVFRAGKA 301

Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICS--GSERLRNKDGEKLHPTQKPEALLSRILVS 219
           +    + + ++         + W  P  S  G E LR +  +  HPT KP  L++  ++ 
Sbjct: 302 R----HRNNVQLGRFGRNRSNVWGYPGASSLGGE-LRRQSAD--HPTPKPIELVTDAILD 354

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            TK GD++LDPF GSGT+   A++  R    IE++  Y+D++ +R
Sbjct: 355 VTKAGDLVLDPFGGSGTTMLAAERSSRKARLIELEGRYVDLSIRR 399


>gi|68249856|ref|YP_248968.1| modification methylase DpnIIB-like [Haemophilus influenzae
           86-028NP]
 gi|145629790|ref|ZP_01785584.1| modification methylase DpnIIB-like protein [Haemophilus influenzae
           22.1-21]
 gi|229844468|ref|ZP_04464608.1| modification methylase DpnIIB-like protein [Haemophilus influenzae
           6P18H1]
 gi|68058055|gb|AAX88308.1| modification methylase DpnIIB-like [Haemophilus influenzae
           86-028NP]
 gi|144977936|gb|EDJ87724.1| modification methylase DpnIIB-like protein [Haemophilus influenzae
           22.1-21]
 gi|229812717|gb|EEP48406.1| modification methylase DpnIIB-like protein [Haemophilus influenzae
           6P18H1]
          Length = 245

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 5/100 (5%)

Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
           D L   N + +M  +W        E+   K+  KLHPTQKP A+L R++   T  GD+++
Sbjct: 151 DKLPKFNNNGKMIKNWF-----EWEKDNRKEIPKLHPTQKPIAVLKRLIEIFTDEGDVVI 205

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           DP  GS ++   A++L R   G E+K+D   IA +++ ++
Sbjct: 206 DPVAGSASTLRAARELNRPSYGFEIKKDSCKIAKEKMLNI 245


>gi|217034539|ref|ZP_03439949.1| hypothetical protein HP9810_897g24 [Helicobacter pylori 98-10]
 gi|216943020|gb|EEC22501.1| hypothetical protein HP9810_897g24 [Helicobacter pylori 98-10]
          Length = 637

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 42/58 (72%), Gaps = 1/58 (1%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           +KPE L+ RIL  +T+  D++LD F GSGT+ AVA K++R +IGIE + DYI+  TK 
Sbjct: 456 KKPEQLIYRILDMATQENDLVLDFFAGSGTTCAVAHKMKRRYIGIE-QMDYIETITKE 512


>gi|269976470|ref|ZP_06183455.1| DNA methylase N-4/N-6 domain-containing protein [Mobiluncus
           mulieris 28-1]
 gi|269935271|gb|EEZ91820.1| DNA methylase N-4/N-6 domain-containing protein [Mobiluncus
           mulieris 28-1]
          Length = 441

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 126/299 (42%), Gaps = 46/299 (15%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT------DS 71
           +++  G +++ L  L    A  VD ++ DPPYN Q +       H     +       D 
Sbjct: 47  NRLYVGENLAALGALAGEFAGGVDCVYIDPPYNSQADYVAKMALHGDGGQILEQKQYGDR 106

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDI 129
           WD       Y  F    L A R +L   G+++V   +H    +  +   +  +  +LN+I
Sbjct: 107 WDD----AQYLQFMFERLGALRELLADTGSIFVHCDWHAAASLRLVCDEVFGSRNLLNEI 162

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA--------------N 175
           VW   +   + R    +  H+T+++ + +  A+   F+ DA++                 
Sbjct: 163 VWIYGSGGGSRRRFGRK--HDTILFYAKN--ARRNFFDPDAVRVPYRAAIAPKRRGLFHP 218

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
           E +     W IP      R  N     + +PTQKP A++ R L  +  PG ++LD F GS
Sbjct: 219 EGMVAPDVWDIP------RPPNHATSWVGYPTQKPLAVMERALRGACPPGGLVLDCFAGS 272

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS------VQPLGNIELTVLTGKRTEPR 287
           G++   A  L   FIG+E     + +A KR+ S      V  +G+  L  L  KR  P 
Sbjct: 273 GSTLVAAAGLGLRFIGVECAALGVHLARKRLVSLGASFGVWRVGDTHLMNLGDKRQPPH 331


>gi|299541742|ref|ZP_07052070.1| Phage protein, DNA methylase [Lysinibacillus fusiformis ZC1]
 gi|298725737|gb|EFI66373.1| Phage protein, DNA methylase [Lysinibacillus fusiformis ZC1]
          Length = 232

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 102/254 (40%), Gaps = 43/254 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K+ I   + +  ++ +P KSVDLI  D PY                   T  WD    FE
Sbjct: 5   KNTIYNMDCLEGMQYIPDKSVDLILTDLPYG----------------TTTCRWDTIIPFE 48

Query: 80  A-YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK---SN 135
             ++ +         RV+K NG + +  S    F    ++ NL  +   + +W+K   + 
Sbjct: 49  LLWEQY--------ERVIKDNGAIVLTAS--QPFTSKLIMSNLKLFRY-EWIWKKGKHTT 97

Query: 136 PMPNFRGRRFQNAHETLIWAS--PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
             PN      +N     ++    P+   +G  +    L   +  +++  D    +     
Sbjct: 98  GFPNANKMPLKNHENVCVFYKKLPTYNPQGVIYCKPVLIKNSPKMKILGDRNETLSKPHI 157

Query: 194 RLRN----------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
             R           +D +  HPTQKP +L   ++++ T PGD +LD   G+ T+      
Sbjct: 158 VKRKNYPKSVIDFPRDSKTWHPTQKPLSLFEYLILTYTNPGDTVLDNCMGAFTTAVACDN 217

Query: 244 LRRSFIGIEMKQDY 257
            +RS+IG E+  +Y
Sbjct: 218 TKRSWIGFELDSEY 231


>gi|300788916|ref|YP_003769207.1| adenine-specific DNA-methyltransferase [Amycolatopsis mediterranei
           U32]
 gi|299798430|gb|ADJ48805.1| putative adenine-specific DNA-methyltransferase [Amycolatopsis
           mediterranei U32]
          Length = 268

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 107/273 (39%), Gaps = 54/273 (19%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPY--------NLQLNGQLYRPDH-SLVDAVTDS----- 71
           GN+  ++ +LP  SVD +   PPY          QL G+    ++ + + AV D      
Sbjct: 15  GNAAGIVAELPESSVDCVVTSPPYWGLRDYRVAEQLGGERTVDEYVARLAAVFDELVHVL 74

Query: 72  ------W----DKFS-SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI-------FR 113
                 W    D +  S+  Y A       A  R   P GT     + H         +R
Sbjct: 75  APQGTVWLNLGDSYGGSWGHYVAAGSTARTAAERSRTPYGTHRPPQASHRAKDLVGVPWR 134

Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
           +   LQ   + +  +I+W K N  P     RF   +E +   +   +        D  + 
Sbjct: 135 VTHALQERGWILEREIIWHKPNARPESVRDRFARRYENIFVLTRDRR--------DPCET 186

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
           +   V     W I     S+R     G   HP +    +  R +    +PG  +LDPF G
Sbjct: 187 SETAV-----WSI----SSDR-----GRVGHPAKGTLEVARRCVRLGCRPGGTVLDPFSG 232

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           SGT+G  A++ R  FIGI++  D   +A +R+ 
Sbjct: 233 SGTTGIAAREHRCRFIGIDLNPDCHALALQRLG 265


>gi|294012595|ref|YP_003546055.1| putative DNA modification methylase [Sphingobium japonicum UT26S]
 gi|292675925|dbj|BAI97443.1| putative DNA modification methylase [Sphingobium japonicum UT26S]
          Length = 443

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 111/258 (43%), Gaps = 37/258 (14%)

Query: 22  KIIKGNSI--SVLEKLPAKSV-DLIFADPPYNLQLNGQL-----YRPDHSLVDAVTDSWD 73
           ++I G+S    V EKL    +  ++F D PYN+ +NG +      + D  ++ A   S  
Sbjct: 178 RLICGDSTKGEVFEKLMGDELAQMVFTDAPYNVPVNGHICGLGKVQHDEFIMGAGEMSRA 237

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH----NIFRIGTMLQ---NLNFWIL 126
           +F+ F A             RV+       V GS H    +   +G ML+    +   + 
Sbjct: 238 EFTDFLA-------------RVMDNLAAYSVDGSIHYQCMDWRHMGEMLEAGERVYDSLR 284

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N +VW K N      G  +++ HE +        A    F          +V     W  
Sbjct: 285 NLVVWNKDN---GGMGTFYRSKHELIFVFRKGSAAHINNFELGQHGRYRTNV-----WDY 336

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
              +  +  RN++   +HPT KP  +++  ++  ++ G I+LD F GSGT+   A++  R
Sbjct: 337 AGVNSLKADRNEE-LAMHPTVKPVKMVADAMLDCSRHGGIVLDAFSGSGTTIIAAEQTGR 395

Query: 247 SFIGIEMKQDYIDIATKR 264
               +EM   Y+D+A +R
Sbjct: 396 LGRAVEMDPRYVDVAVRR 413


>gi|325134389|gb|EGC57034.1| hypothetical protein NMBM13399_0829 [Neisseria meningitidis M13399]
          Length = 700

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 2/79 (2%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
            ++ L+   G K+  T KPE+LL  ++  +T   DI+LD   GSGT+ AVA K+ R +IG
Sbjct: 490 ATDELKKLFGSKVFTTPKPESLLQYLIQIATSESDIVLDYHLGSGTTAAVAHKMNRQYIG 549

Query: 251 IEMKQDYID-IATKRIASV 268
           IE + DYI+ +A +R+  V
Sbjct: 550 IE-QMDYIETLAVERLKKV 567


>gi|282901316|ref|ZP_06309242.1| DNA modification methylase [Cylindrospermopsis raciborskii CS-505]
 gi|281193811|gb|EFA68782.1| DNA modification methylase [Cylindrospermopsis raciborskii CS-505]
          Length = 348

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 40/63 (63%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP   P  ++  ++   +K GD +LDPF GSGT+   AK L R ++GIE+  DY+++A  
Sbjct: 275 HPAVYPLYIIQELIKLLSKEGDFVLDPFCGSGTTCLAAKNLNRHYLGIEINPDYVNLANS 334

Query: 264 RIA 266
           R+A
Sbjct: 335 RMA 337



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 77/174 (44%), Gaps = 26/174 (14%)

Query: 7   LAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           + IN     I  +K+KII G+++SVL+++   + DLI   PPY  Q N      D  + +
Sbjct: 1   MLINMPLQEISHFKNKIIFGDNLSVLKQIENDTFDLIITSPPYFQQRN--YGNGDLEIGN 58

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-------WVIGSYHNI---FRIGT 116
             T++         Y          C RVLK  G +       ++ GS   I   F I  
Sbjct: 59  ESTEA--------EYLNNILTVFQECVRVLKSTGAIVFNLGDKYINGSLSLIPYKFAIQA 110

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET-LIWASPSPKAKGYTFNYD 169
             +N N +++N I W K NP P    ++   A E   I+A    K+K Y FN D
Sbjct: 111 T-ENNNIFLINQITWSKLNPTPRQDKKKLIQATEPFFIFA----KSKDYYFNLD 159


>gi|160931951|ref|ZP_02079343.1| hypothetical protein CLOLEP_00784 [Clostridium leptum DSM 753]
 gi|156868993|gb|EDO62365.1| hypothetical protein CLOLEP_00784 [Clostridium leptum DSM 753]
          Length = 253

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 101/255 (39%), Gaps = 40/255 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNL---------QLNGQLYR---PDHSLVDAVTD 70
           II G+++ V++    K+ D +  DPPY           +   Q Y    P+++L D   D
Sbjct: 11  IIHGDTLQVIKSFQPKTFDALITDPPYASGGWKPSEKNRTTSQKYSSMDPENALPDFDGD 70

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
           + D+ S    +  +   WL   R+  KP   + +   +     I   LQ   +     +V
Sbjct: 71  NRDQRS----WTRWMAEWLSDARKACKPGAPVCLFIDWRQYPSITDALQWAGWIWRGVVV 126

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W K    P  +G RF+   E ++W S  P                    M     +    
Sbjct: 127 WDKLTSRPQ-KG-RFRQQSEYIVWGSNGP--------------------MPISRPVGCLP 164

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           G  R  N    ++H T+KP  L+ R ++    PG  ILDPF G+GT+   +       +G
Sbjct: 165 GVYRYANPQ-NRIHVTEKPLPLM-REIIKICVPGGRILDPFCGAGTTVLASVMEGYEAVG 222

Query: 251 IEMKQDYIDIATKRI 265
           IE+   Y  +   R+
Sbjct: 223 IEVTDAYYKLGVDRV 237


>gi|148826327|ref|YP_001291080.1| putative type III restriction/modification system modification
           methylase [Haemophilus influenzae PittEE]
 gi|148716487|gb|ABQ98697.1| putative type III restriction/modification system modification
           methylase [Haemophilus influenzae PittEE]
          Length = 713

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 2/69 (2%)

Query: 197 NKDGE-KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +K+G+ +    +KPE LL RI+  ST   DI+LD F GSGT+ AVA K+ R FI IE + 
Sbjct: 503 SKEGQIQFKNAKKPETLLQRIIEISTNENDIVLDFFAGSGTTAAVAMKMNRQFITIE-QM 561

Query: 256 DYIDIATKR 264
           DYI+  TK 
Sbjct: 562 DYIETITKE 570


>gi|298369799|ref|ZP_06981115.1| DNA (cytosine-5-)-methyltransferase [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298281259|gb|EFI22748.1| DNA (cytosine-5-)-methyltransferase [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 302

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/314 (21%), Positives = 122/314 (38%), Gaps = 82/314 (26%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG-------QLYRPDHSLVDAVTDSWD 73
           + +I G+   +++K+P + +     DPPYN +  G       ++ R  + + ++  ++  
Sbjct: 6   NSVIHGDCRDIMKKIPNEFISSCVTDPPYNYEFIGHNNWDEKEIQRRKNRINNSSNNTLI 65

Query: 74  KFSSFEA---------------------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
           K   + +                     Y  +   W     R+ KP  ++ +  S   + 
Sbjct: 66  KHIPYGSGLSGGVRNEKWYKKNRDNILEYQQWCLDWGAELFRICKPGASVVIFNSTRTVA 125

Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
            +   L+   F+  + IV+R+++ +P  +G   +   E         K   Y  N + L 
Sbjct: 126 HVQVALEQAGFYTRDIIVYRRASGIP--KGLNLKRKLE---------KQGYYNKNAEGLH 174

Query: 173 AANEDVQMRSDWLIPICSGSERLRN--------------------------------KDG 200
           +      +R++W   IC   + L+N                                KD 
Sbjct: 175 SC-----LRNEWE-AICVLQKPLKNNYLQTYIEYGTGLFYTKMKNGGFRSNIIENIKKDA 228

Query: 201 E---KLHPTQKPEALLSRIL--VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                +H T KP  L+  +L          I+LDPF GSGT+   AKK+  +F+GIE++ 
Sbjct: 229 PLDFNIHTTIKPLDLMINLLDIFVPKNENAIVLDPFSGSGTTLVAAKKMGINFLGIEIEP 288

Query: 256 DYIDIATKRIASVQ 269
            YI+I  KR+   Q
Sbjct: 289 KYIEIINKRLELSQ 302


>gi|258592088|emb|CBE68393.1| Modification methylase BglI (M.BglI) (N(4)-cytosine-specific
           methyltransferase BglI) (BglI modification
           methyltransferase) [NC10 bacterium 'Dutch sediment']
          Length = 338

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 21/163 (12%)

Query: 111 IFRIGTMLQ----NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG--- 163
           +F +G +LQ    ++  ++ +  +W K     N R            W S S +A     
Sbjct: 180 VFVVGGLLQGWAESVGLYLYDRRIWHKDPCWANSR------------WHSNSYRAVDEFE 227

Query: 164 --YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
             Y F    +   + +   +++W      G   +R+      H  + PE L  R++   +
Sbjct: 228 YLYVFWKPGIIDVDRNRLKKNEWAEWGSRGVWNIRSVQRNGRHECEFPEMLAERVIRLFS 287

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            PGD+++DPF GSGT+  +A KL+R +IGI+  + Y  +A  R
Sbjct: 288 DPGDVVIDPFVGSGTTTRMAHKLKRKYIGIDRLKKYTKLAESR 330


>gi|254415251|ref|ZP_05029013.1| DNA methylase [Microcoleus chthonoplastes PCC 7420]
 gi|196178057|gb|EDX73059.1| DNA methylase [Microcoleus chthonoplastes PCC 7420]
          Length = 299

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           H  + PE L SR++   ++  D+ILDPF GSGT+   A K  R++IGIE +  Y+ +A K
Sbjct: 225 HEAKFPEELASRVIRLFSEENDLILDPFMGSGTTAVAAIKHNRNYIGIEKEAKYVKLAKK 284

Query: 264 RIASVQPLGNIELTVL 279
           RI  +     +EL ++
Sbjct: 285 RIRELSSF-QLELNLV 299


>gi|147677091|ref|YP_001211306.1| DNA modification methylase [Pelotomaculum thermopropionicum SI]
 gi|146273188|dbj|BAF58937.1| DNA modification methylase [Pelotomaculum thermopropionicum SI]
          Length = 315

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 103/259 (39%), Gaps = 58/259 (22%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           +E+LP  SV L+   PPYN                     +DK  +   Y  F +     
Sbjct: 80  MEELPDSSVHLMVTSPPYN-----------------AGKDYDKNLTLSQYRDFLKRVWKE 122

Query: 92  CRRVLKPNGTLWVIGSYHNIFR---------IGTMLQNLNFWILNDIVWRKSNPM----- 137
             RVL P G   +  +  N+ R         I   +Q+L F +  +I+W K++       
Sbjct: 123 VYRVLVPGGRACI--NVANLGRKPYIPIHTCITEDMQDLGFLMRGEIIWNKASSASPSTA 180

Query: 138 ---------PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM-RSDWLIP 187
                    P  R     + HE ++  S     +   +  ++     + ++  +S W  P
Sbjct: 181 WGSWLSAANPTLR-----DVHEYILVFSKDAFTRKNPYCRESTITKEQFLEYTKSVWTFP 235

Query: 188 ICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                     +  +K+ HP   P  L  R++   T  G+++LDPF GSG +   A K  R
Sbjct: 236 A---------EQAKKIGHPAPFPVELPYRLIQLYTFKGEVVLDPFLGSGQTAIAALKAGR 286

Query: 247 SFIGIEMKQDYIDIATKRI 265
            ++G E+  +Y+ +A +RI
Sbjct: 287 RYVGYEIDGNYVGLAKRRI 305


>gi|298372547|ref|ZP_06982537.1| DNA (cytosine-5-)-methyltransferase [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298275451|gb|EFI17002.1| DNA (cytosine-5-)-methyltransferase [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 280

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 117/269 (43%), Gaps = 45/269 (16%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN--GQLYRPDHSLVDAVTDSWD 73
           I  +++K+   + + +L+ LP  S+D+++ DP YN+ +N  G+ Y          T  W 
Sbjct: 2   IENFRNKVFNEDVLKILKSLPDNSLDMVYGDPDYNVGINYAGRNY----------TQKWA 51

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG-SYHNIFRIGTMLQNLNFWILNDIVWR 132
           ++  +   D  T +      RVLKP G L+++     N +     L N N + ++D VW 
Sbjct: 52  EYIEWYV-DLATESM-----RVLKPTGNLFMMNYPKQNAYLRVKYLDN-NAYDVSDYVW- 103

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV-------------- 178
             N       R+   AH +++ A+   K+K   F  D +    ++               
Sbjct: 104 IYNTNVGHSPRKLTTAHRSILHAT---KSKNNAFYKDNISVPYQNPTDKRIMKRIADGHT 160

Query: 179 -QMRSDWLIPICSGSERLRNKDGEK-LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
            +M   W        + ++N   +K  H  Q P  L+  ++ S T+  D     F GSG+
Sbjct: 161 GRMPYSWFY-----YDLVKNVSKDKTFHSCQIPLPLVEMLIKSCTREQDDCFILFGGSGS 215

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
              + K L+R++I  E+  +Y  +  +R+
Sbjct: 216 ELVLCKNLKRNYISCELHPEYYQMILERL 244


>gi|298373418|ref|ZP_06983407.1| DNA modification methylase [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298274470|gb|EFI16022.1| DNA modification methylase [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 364

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 115/277 (41%), Gaps = 61/277 (22%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR--PDHSLVDAVTDSWDKFSSFEA 80
           + + + ++ L++    S+DLI   PPY  Q   + Y   P +  V+              
Sbjct: 102 LFRDDCLNKLKQFKDDSIDLIITSPPYADQ-RKKTYGGIPPNKYVE-------------- 146

Query: 81  YDAFTRAWLLACR----RVLKPNGTLW------VIGSYHNIFRIGTMLQ-NLNFWI-LND 128
                  W L+      RVLKP+GT        V     + + I  +L+     W+   +
Sbjct: 147 -------WFLSISEQLLRVLKPSGTFILNIKEKVSQGERSTYVIELVLEMKKQGWLWTEE 199

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT---------FNYDALKAANEDVQ 179
            +W K N  P     RF+++ E L+  + + K   Y          +  D LK  ++  +
Sbjct: 200 FIWHKKNSFPGKWSNRFRDSWERLLQFNKNKKFNMYQDAVKIPIGDWASDRLKKLSDVDK 259

Query: 180 MR-------------SDWL---IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKP 223
           +R             S+WL   +   S    L  +   K H    PE+L    +   T+ 
Sbjct: 260 IRDNAKNGSGFGKKVSNWLGKDMVYPSNVLYLATECNNKKHSAAFPESLPEWFIKLFTQE 319

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           GDI+LDPF GSGT+ +VA +L R  IGIE+   YI++
Sbjct: 320 GDIVLDPFVGSGTTLSVAYRLNRKSIGIEIIPQYIEV 356


>gi|85703053|ref|ZP_01034157.1| DNA methylase N-4/N-6 [Roseovarius sp. 217]
 gi|85671981|gb|EAQ26838.1| DNA methylase N-4/N-6 [Roseovarius sp. 217]
          Length = 426

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 102/228 (44%), Gaps = 41/228 (17%)

Query: 42  LIFADPPYNLQLNGQLYRPD--HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99
           L+  DPPY     G +Y PD  +    + T    K  + +  D +  AW       L P 
Sbjct: 203 LMVTDPPY-----GVMYDPDWRNRAGASETKRTGKVLNDDRAD-WRAAW------ALFPG 250

Query: 100 GTLWVIGSYHNIFRIGTMLQNL---NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
              +V   +H      T+ ++L    F I + I+W K   + + RG  +   HE   +A 
Sbjct: 251 DVAYV---WHGALHATTVAESLVASGFDIRSQIIWAKDRHVLS-RGH-YHWQHEPAWYAV 305

Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
              +AKG+          + D +  + W IP        R++D E  H TQKP   + R 
Sbjct: 306 ---RAKGHW---------SGDRKQSTLWSIPN-------RDQDAETSHGTQKPVECMRRP 346

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           +++++ PG +I +PF GSGT+   A+  +R    IE+   Y+D+A  R
Sbjct: 347 ILNNSSPGQVIYEPFCGSGTTLIAAQSAKRIGFAIELDPTYVDVAVLR 394


>gi|329122242|ref|ZP_08250832.1| site-specific DNA-methyltransferase [Haemophilus aegyptius ATCC
           11116]
 gi|327473915|gb|EGF19329.1| site-specific DNA-methyltransferase [Haemophilus aegyptius ATCC
           11116]
          Length = 245

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 5/100 (5%)

Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
           D L   N + +M  +W        E+   K+  KLHPTQKP A+L R++   T  GD+++
Sbjct: 151 DKLPKFNNNGKMIKNWF-----EWEKDNRKEIPKLHPTQKPIAVLKRLIEIFTDEGDVVI 205

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           DP  GS ++   A++L R   G E+K+D   IA +++ ++
Sbjct: 206 DPVAGSASTLRAARELNRPSYGFEIKKDSCKIAKEQMLNI 245


>gi|315295559|gb|EFU54883.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 16-3]
          Length = 185

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 43/70 (61%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ + Y  
Sbjct: 98  GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHR 157

Query: 260 IATKRIASVQ 269
              +R+A+VQ
Sbjct: 158 AGQQRLAAVQ 167


>gi|326387306|ref|ZP_08208916.1| adenine specific DNA methylase [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208487|gb|EGD59294.1| adenine specific DNA methylase [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 562

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 40/55 (72%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           +GEK   T KPE ++ R L  +T+PGDI+LD F GSGT+GAVA K+ R +I +E+
Sbjct: 302 EGEKSFDTPKPEKIVQRALEVATRPGDIVLDSFAGSGTTGAVAHKMGRRWIMVEI 356


>gi|319775706|ref|YP_004138194.1| DNA methylase [Haemophilus influenzae F3047]
 gi|317450297|emb|CBY86513.1| DNA methylase [Haemophilus influenzae F3047]
          Length = 245

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 5/100 (5%)

Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
           D L   N + +M  +W        E+   K+  KLHPTQKP A+L R++   T  GD+++
Sbjct: 151 DKLPKFNNNGKMIKNWF-----EWEKDNRKEIPKLHPTQKPIAVLKRLIEIFTDEGDVVI 205

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           DP  GS ++   A++L R   G E+K+D   IA +++ ++
Sbjct: 206 DPVAGSASTLRAARELNRPSYGFEIKKDSCKIAKEQMLNI 245


>gi|261340392|ref|ZP_05968250.1| DNA (cytosine-5-)-methyltransferase [Enterobacter cancerogenus ATCC
           35316]
 gi|288317484|gb|EFC56422.1| DNA (cytosine-5-)-methyltransferase [Enterobacter cancerogenus ATCC
           35316]
          Length = 376

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 44/71 (61%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           R    +  HPT KP AL+S +    T PG  +LDP+ GSG++G  A +   +FIGI++  
Sbjct: 296 RTNGAKNNHPTVKPIALMSYLCRLITPPGGTVLDPWMGSGSTGRAAIEEGFNFIGIDLNP 355

Query: 256 DYIDIATKRIA 266
           DY+ IA+ RIA
Sbjct: 356 DYVTIASARIA 366



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 49/134 (36%), Gaps = 30/134 (22%)

Query: 31  VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
           VL+ LP  SVD I  DPPY L                +   WD       YD  T     
Sbjct: 13  VLKTLPDNSVDAIVTDPPYGLSF--------------MNHKWD-------YDVPTVEQWQ 51

Query: 91  ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR--------- 141
            C RVLKP G L   G      R+    ++  F I + I+W   +  P            
Sbjct: 52  ECLRVLKPGGHLLAFGGSRTYHRLVVNAEDAGFEIRDQILWIYGSGFPKSHNLDGDFDGW 111

Query: 142 GRRFQNAHETLIWA 155
           G   + AHE ++ A
Sbjct: 112 GTALKPAHEPIVMA 125


>gi|226303534|ref|YP_002763492.1| DNA methyltransferase [Rhodococcus erythropolis PR4]
 gi|226182649|dbj|BAH30753.1| probable DNA methyltransferase [Rhodococcus erythropolis PR4]
          Length = 291

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 124/299 (41%), Gaps = 50/299 (16%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQL 57
           ++    A  E  N   +W+  +++G+    L+ L  +SVD +   PPY    + ++ GQ 
Sbjct: 8   AESEPFAAGERPNGT-KWQ--VLQGDCRVALQDLAPESVDCVVTSPPYYWQRDYEVAGQF 64

Query: 58  -YRPD-HSLVDAVTDSW------------------DKFSSFEA----YDAFTRAWLLACR 93
              P     VD + +++                  D + S +      DA  R+  L   
Sbjct: 65  GLEPSIDGFVDNLREAFAALRPALKNTGTVFLNLGDTYYSAKGRPHGTDAKHRSRRLPGL 124

Query: 94  RVLKPNGTLWVIGSYHNI-FRIGTMLQNLNFWILNDIVW-RKSN-PMPNFRGRRFQNAHE 150
           R +   G      S   I +R+   LQ   + + + I+W RKS  P P  + R ++  +E
Sbjct: 125 RAVDGPGLGLPRKSLIGIPWRVALALQEDGWTLRSTIIWVRKSAIPEPTSKDRPWRK-YE 183

Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
            +   S SPK   Y F+ + L    EDV     W I      E  R       H    P 
Sbjct: 184 HIFLFSKSPK---YYFDREGLNG-EEDV-----WFI------EPDRKSLARGTHYAPYPR 228

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            L+ R + S    G ++LDPF G GT+  VA  + RS IG+E+  ++  +    + +++
Sbjct: 229 KLVERCINSGCPEGGVVLDPFLGGGTTMYVADAMGRSSIGVELNPEFCSLVADNMTAME 287


>gi|148827567|ref|YP_001292320.1| hypothetical protein CGSHiGG_04970 [Haemophilus influenzae PittGG]
 gi|148718809|gb|ABQ99936.1| hypothetical protein CGSHiGG_04970 [Haemophilus influenzae PittGG]
          Length = 243

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 5/98 (5%)

Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
           D L   N + +M  +W        E+   K+  KLHPTQKP A+L R++   T  GD+++
Sbjct: 151 DKLPKFNNNGKMIKNWF-----EWEKDNRKEIPKLHPTQKPIAVLKRLIEIFTDEGDVVI 205

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           DP  GS ++   A++L R   G E+K+D   IA ++ A
Sbjct: 206 DPVAGSASTLRAARELNRPSYGFEIKKDSCKIAKRKNA 243


>gi|323698906|ref|ZP_08110818.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio sp. ND132]
 gi|323458838|gb|EGB14703.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio desulfuricans
           ND132]
          Length = 242

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 96/232 (41%), Gaps = 47/232 (20%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           L   PA   + I  DPPY + +  + +      +D +   +                   
Sbjct: 30  LGNCPAHRYEAIITDPPYEIGIASKEWDCKELQIDVLAYQF------------------- 70

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAH 149
             RVLKP G ++V  S    F+ GT  + L+  F  L    W K + +   +G  FQ + 
Sbjct: 71  -HRVLKPGGNVFVFCS---DFQFGTWYRELSRYFTKLRKYAWCKPDSVGYNKGM-FQESF 125

Query: 150 ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL---------RNKDG 200
           E  + A  S  +     NY            ++  +I   SG ER+         + K  
Sbjct: 126 ELGLHAC-SDDSYFDMGNY-----------YKNHTVIGKTSGKERIMPDPDEEWTKGKGS 173

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           + LHPTQK   ++  ++ + +K GD ILDPF G+GT    AK+L R F  I+
Sbjct: 174 KALHPTQKSLEVIKNLVSALSKEGDTILDPFSGTGTLRVAAKQLGRKFEMID 225


>gi|238544539|dbj|BAH60891.1| putative DNA-methyltransferase [Desulfotignum balticum]
          Length = 752

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 44/66 (66%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +PTQKPE  + R++ +S+K GD+I D F GSGT+ AVA+KL R +I  ++ +  I    K
Sbjct: 367 YPTQKPEQFIERMVKTSSKKGDLIADFFCGSGTTAAVAEKLNRKWICSDLGKFAIHTTRK 426

Query: 264 RIASVQ 269
           R+  VQ
Sbjct: 427 RMIGVQ 432


>gi|256026475|ref|ZP_05440309.1| putative type III restriction enzyme M protein [Fusobacterium sp.
           D11]
          Length = 357

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 42/63 (66%), Gaps = 2/63 (3%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI-DIATKRI 265
           QK E L+ RI+ +ST  GD ILD   GSGT+ AVA K+ R +IGIE + DYI DI  +R+
Sbjct: 171 QKSEKLIERIIKNSTMEGDTILDFHLGSGTTAAVAHKMGRRYIGIE-QMDYIEDIVVERL 229

Query: 266 ASV 268
             V
Sbjct: 230 KKV 232


>gi|217032405|ref|ZP_03437899.1| hypothetical protein HPB128_164g5 [Helicobacter pylori B128]
 gi|298737043|ref|YP_003729573.1| adenine-specific DNA-methyltransferase [Helicobacter pylori B8]
 gi|216945884|gb|EEC24502.1| hypothetical protein HPB128_164g5 [Helicobacter pylori B128]
 gi|298356237|emb|CBI67109.1| adenine-specific DNA-methyltransferase [Helicobacter pylori B8]
          Length = 655

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 42/62 (67%), Gaps = 1/62 (1%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           L   +KPE L+ RIL  +T   D++LD F GSGT+ AVA K++R +IGIE + DYI+  T
Sbjct: 470 LKNGKKPEQLIYRILEIATNENDLVLDFFAGSGTTCAVAHKMKRRYIGIE-QMDYIETIT 528

Query: 263 KR 264
           K 
Sbjct: 529 KE 530


>gi|304439210|ref|ZP_07399128.1| DNA (cytosine-5-)-methyltransferase [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304372342|gb|EFM25930.1| DNA (cytosine-5-)-methyltransferase [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 411

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 108/250 (43%), Gaps = 37/250 (14%)

Query: 20  KDKIIKGNSISVL--EKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K K+I G+S   +  EKL  +S  +LI  DPPYN+   G       S      D+ ++  
Sbjct: 167 KHKLICGDSTDEITYEKLMGESKANLIITDPPYNVNYEG-------SAGKIKNDNMEQGK 219

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            +E    F  +  L   + L  +G+++V  +           Q+  F++    +W+K + 
Sbjct: 220 FYE----FLLSSFLNMEKFLADDGSIYVFHADTEGLNFRKAFQDAGFYLSGTCIWKKQSL 275

Query: 137 MPNFRGRR-FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           +    GR  +Q  HE +++     K KG    Y   K +             I    +  
Sbjct: 276 V---LGRSPYQWQHEPILYGW---KKKGKHNWYTGRKEST------------IWEFDKPR 317

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +N D    HPT KP  LLS  + +S+    I+LDPF GSG++    ++  R    IE+ +
Sbjct: 318 KNGD----HPTMKPIPLLSYPIKNSSMTNSIVLDPFGGSGSTLIACEQTDRICRMIELDE 373

Query: 256 DYIDIATKRI 265
            ++D+   R 
Sbjct: 374 KFVDVIVNRF 383


>gi|237751142|ref|ZP_04581622.1| adenine-specific DNA methylase [Helicobacter bilis ATCC 43879]
 gi|229373587|gb|EEO23978.1| adenine-specific DNA methylase [Helicobacter bilis ATCC 43879]
          Length = 221

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 99/232 (42%), Gaps = 35/232 (15%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLY----RPDHSLVDAVTDSWDKFSSFEAYD 82
           + + ++  L + SVDL F DP Y   L+   Y    +        V  S ++  SF    
Sbjct: 16  DGLELMGSLESCSVDLCFFDPQYRGVLDKMRYGNEGKRQKGRSTLVQMSEEQIQSF---- 71

Query: 83  AFTRAWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                 +    RVLKP+  L + I  +H    +   ++  +  +++ I W K      +R
Sbjct: 72  ------ICEIDRVLKPSCYLMLWIDKFHLCEGVKAWVEQTSLQVVDLITWDKLKMGMGYR 125

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            RR Q+ +  ++  +P      +  +            +R  W       SE++ N D  
Sbjct: 126 TRR-QSEYLLVLQKAPVRAKNTWRLH-----------NIRDVW-------SEKIPN-DEL 165

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           K+HP  KP+ L   ++ S T  GD++LDP  GS +    A++L R FIG  +
Sbjct: 166 KIHPHSKPKGLQKALIESCTNKGDLVLDPASGSFSVFECARELGREFIGTNL 217


>gi|209528419|ref|ZP_03276856.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
 gi|209491146|gb|EDZ91564.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
          Length = 375

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 127/344 (36%), Gaps = 114/344 (33%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           ++ G+ + V+++LP+ S D     PPY         G    PD                F
Sbjct: 47  LMLGDVLEVMKELPSDSFDCCMTSPPYWGKREYDAGGIGLEPD----------------F 90

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWV-IG-SYHN------IFRIGTMLQNLNFWIL-NDI 129
             Y            RVLK  G+ W+ IG SY+N       +RI   L +   WIL N +
Sbjct: 91  NTYIDNLCLVFSEVHRVLKKTGSFWLNIGDSYYNKNLLGLPWRIALNLTDNQGWILRNSV 150

Query: 130 VWRKSNPMPNFRGRRFQNAHETL---------------IWASPSP---------KAKGYT 165
           +W K    P+    R +N HE +               I +SP            A G T
Sbjct: 151 IWNKVKGGPDNSKDRLRNIHENVFHFVKSSRYYYDIDSIRSSPRKTKVVNGSVVSATGVT 210

Query: 166 -----------------FNYDALKAANEDVQMRSDWLIP----ICSGSERLRNKDGEKL- 203
                              ++A +A  E ++  SD +I     I  G +R  + D EK+ 
Sbjct: 211 GVRYKRKIELSTDLSENEKHNAYQALEEILRQVSDGIISDFRMIIRGQQRTTHSDSEKVS 270

Query: 204 ----------------HPT-QKPEAL---------------------LSRILVSST-KPG 224
                           HP   KP  +                     L +I +SST  P 
Sbjct: 271 GRAKELKEKGFYFLKYHPKGSKPSDVWEILPEDAQKRELHFAPYPVDLCKIPISSTCPPN 330

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            IILDPF G+GT+  VA+ L R   GI++   Y++IA +R  ++
Sbjct: 331 GIILDPFCGTGTTMLVAQLLGRKSCGIDLSPQYLEIAKERSETI 374


>gi|148828222|ref|YP_001292975.1| twin-argninine leader-binding protein DmsD [Haemophilus influenzae
           PittGG]
 gi|115289027|gb|ABI85520.1| M.Hin1056ModP-8 [Haemophilus influenzae]
 gi|148719464|gb|ABR00592.1| twin-argninine leader-binding protein DmsD [Haemophilus influenzae
           PittGG]
          Length = 724

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 43/63 (68%), Gaps = 2/63 (3%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRI 265
           +KPE LL  IL  +TK GDIILD   GSGT+ AVA K+ R +IGIE + DYI  +A +R+
Sbjct: 530 KKPEQLLKIILDCATKKGDIILDFHLGSGTTAAVAHKMNRQYIGIE-QMDYIKTLAVERL 588

Query: 266 ASV 268
             V
Sbjct: 589 KKV 591


>gi|320199117|gb|EFW73713.1| Adenine-specific methyltransferase [Escherichia coli EC4100B]
          Length = 217

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 97/245 (39%), Gaps = 56/245 (22%)

Query: 34  KLPAKSVDL---IFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
           KL  ++V L      DPPY   L G   R   ++   V D W + +S E Y         
Sbjct: 2   KLKQQTVRLSRRTLTDPPY---LVGFRDRSGRTIAGDVNDDWLQPASNEMY--------- 49

Query: 91  ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNFRGRRFQNAH 149
              RVLK +  +     ++ I R     +   F ++  +V+ KS      +   R + A+
Sbjct: 50  ---RVLKKDALMVSFYGWNRIDRFMAAWKRAEFSVVGHLVFTKSYTSKSAYVAYRHECAY 106

Query: 150 -----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
                   +   P P   G+ ++                                G + H
Sbjct: 107 ILAKGRPALPPKPLPDVLGWKYS--------------------------------GNRHH 134

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ + Y     +R
Sbjct: 135 PTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQR 194

Query: 265 IASVQ 269
           +A+VQ
Sbjct: 195 LATVQ 199


>gi|195940396|ref|ZP_03085778.1| putative methylase [Escherichia coli O157:H7 str. EC4024]
          Length = 209

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 43/70 (61%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ + Y  
Sbjct: 122 GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHR 181

Query: 260 IATKRIASVQ 269
              +R+A+VQ
Sbjct: 182 AGQQRLAAVQ 191


>gi|317013169|gb|ADU83777.1| type III restriction-modification system: methyltransferase
           [Helicobacter pylori Lithuania75]
          Length = 646

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 2/87 (2%)

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPT-QKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           ++R DW          +  + G+ L    +KPE L+  IL  ST+  D++LD F GSGT+
Sbjct: 436 KIRGDWWAGYYKDMGNVNKQGGDILFKNGKKPERLIKDILEISTQENDLVLDFFAGSGTT 495

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKR 264
            AVA K++R +IGIE + DYI+  TK 
Sbjct: 496 CAVAHKMKRRYIGIE-QMDYIETITKE 521


>gi|307826187|ref|ZP_07656398.1| DNA methylase N-4/N-6 domain protein [Methylobacter tundripaludum
           SV96]
 gi|307732826|gb|EFO03692.1| DNA methylase N-4/N-6 domain protein [Methylobacter tundripaludum
           SV96]
          Length = 308

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 40/64 (62%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  L+  I+ +S+KP D++LD F GSG++    ++L R F+G EM +   D A  
Sbjct: 245 HPCEKPLDLMRHIIEASSKPNDVVLDTFVGSGSTAIACRELGRGFVGCEMGEAEFDGAVD 304

Query: 264 RIAS 267
           R+ S
Sbjct: 305 RLTS 308



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 17/108 (15%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAYDAFT 85
           + +++L +LP  S+DLI  DPPY  ++ G+              +WD ++ S   + A+ 
Sbjct: 15  DCLTLLSQLPDNSIDLIATDPPY-YKVKGE--------------AWDNQWQSKADFFAWL 59

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
            + L+   RVLKP G+L++    H   ++   +    F +LN ++WRK
Sbjct: 60  DSILVEYHRVLKPAGSLYLFAGPHLATQVDVAVSQ-RFNLLNHLIWRK 106


>gi|58696775|ref|ZP_00372310.1| DNA methylase [Wolbachia endosymbiont of Drosophila simulans]
 gi|225630341|ref|YP_002727132.1| DNA methylase [Wolbachia sp. wRi]
 gi|225630735|ref|YP_002727526.1| DNA methylase [Wolbachia sp. wRi]
 gi|58537028|gb|EAL60168.1| DNA methylase [Wolbachia endosymbiont of Drosophila simulans]
 gi|116486897|emb|CAH64692.1| DNA methylase [Wolbachia endosymbiont of Drosophila teissieri]
 gi|116486899|emb|CAH64693.1| DNA methylase [Wolbachia endosymbiont of Drosophila simulans]
 gi|225592322|gb|ACN95341.1| DNA methylase [Wolbachia sp. wRi]
 gi|225592716|gb|ACN95735.1| DNA methylase [Wolbachia sp. wRi]
          Length = 408

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 41/62 (66%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           LHPT KP  L+ + +V+S++PGD +LDPF GSG++    ++  R    IE+   ++D+A 
Sbjct: 320 LHPTMKPVELMEKAIVNSSRPGDTVLDPFSGSGSTLIACERTGRICRTIELDSKFVDVAI 379

Query: 263 KR 264
           KR
Sbjct: 380 KR 381


>gi|319896754|ref|YP_004134948.1| DNA methylase [Haemophilus influenzae F3031]
 gi|317432257|emb|CBY80609.1| DNA methylase [Haemophilus influenzae F3031]
          Length = 245

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 5/100 (5%)

Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
           D L   N + +M  +W        E+   K+  KLHPTQKP A+L R++   T  GD+++
Sbjct: 151 DKLPKFNNNGKMIKNWF-----EWEKDNRKEIPKLHPTQKPIAVLKRLIEIFTDEGDVVI 205

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           DP  GS ++   A++L R   G E+K+D   IA +++ ++
Sbjct: 206 DPVAGSASTLRAARELYRPSYGFEIKKDSCKIAKEQMLNI 245


>gi|51893663|ref|YP_076354.1| type II restriction-modification system DNA methylase
           [Symbiobacterium thermophilum IAM 14863]
 gi|51857352|dbj|BAD41510.1| type II restriction-modification system DNA methylase
           [Symbiobacterium thermophilum IAM 14863]
          Length = 304

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 101/257 (39%), Gaps = 53/257 (20%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           +P   VDL+   PPYN+   G+ Y        A  D  D  S  E  D   + W   C R
Sbjct: 60  IPDGVVDLVVTSPPYNV---GKNY--------ATHD--DCLSMEEYLDLLEQVWR-ECYR 105

Query: 95  VLKPNGTLW--VIGSYHNIF-----RIGTMLQNLNFWILNDIVWRK-------------- 133
           VL P G +   V G     +      I   +  L F +  +I+W K              
Sbjct: 106 VLAPGGRIAINVAGVDRKPYLPLHAYITLQMIRLGFQMRGEIIWNKGASVGVSTAWGSWC 165

Query: 134 --SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
             SNP         ++ HE ++  S      G+    D L         +S W  P  S 
Sbjct: 166 SPSNPT-------LRDLHEYILVFSKEDWRMGHRGETD-LTPEEFVTYTKSIWEFPTVSA 217

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
                 K G   HP   P  L SR++   T  GD++LDPF GSGT+   A  L R +IG+
Sbjct: 218 -----KKVG---HPAPFPLELPSRLIKLYTYKGDLVLDPFNGSGTTCQAAALLGRRWIGV 269

Query: 252 EMKQDYIDIATKRIASV 268
           ++   Y  +A K + ++
Sbjct: 270 DIDPGYCALAEKNMRTL 286


>gi|115522589|ref|YP_779500.1| DNA methylase N-4/N-6 domain-containing protein [Rhodopseudomonas
           palustris BisA53]
 gi|115516536|gb|ABJ04520.1| DNA methylase N-4/N-6 domain protein [Rhodopseudomonas palustris
           BisA53]
          Length = 596

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 47/77 (61%)

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           S  L N+ G +    +KPEAL+ R L  ++ PGD++LD F GSGT+GAVA K+ R +I +
Sbjct: 330 SNNLHNEGGIEFPKGKKPEALIKRCLDLASDPGDLVLDSFAGSGTTGAVAHKMGRRWIMV 389

Query: 252 EMKQDYIDIATKRIASV 268
           E+ +  +     RI  +
Sbjct: 390 ELGEHAVTHIVPRIKRI 406


>gi|268318802|ref|YP_003292458.1| type III restriction-modification system: adenine specific DNA
           methylase [Lactobacillus johnsonii FI9785]
 gi|262397177|emb|CAX66191.1| type III restriction-modification system: adenine specific DNA
           methylase [Lactobacillus johnsonii FI9785]
          Length = 698

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 1/79 (1%)

Query: 191 GSERLRNKDGE-KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           G+ +  NK+G+      +KPE LLSRI+  +T   +++LD F GSG++ A A KL R FI
Sbjct: 489 GATKNVNKEGQVSFSNGKKPEELLSRIIKMATNENELVLDMFLGSGSTSATALKLNRRFI 548

Query: 250 GIEMKQDYIDIATKRIASV 268
           G+E     I++  KR+ +V
Sbjct: 549 GVEQIDHQINLIKKRMTNV 567


>gi|163733749|ref|ZP_02141191.1| probable DNA-methyltransferase protein (hemagglutinin-associated
           protein) [Roseobacter litoralis Och 149]
 gi|161392860|gb|EDQ17187.1| probable DNA-methyltransferase protein (hemagglutinin-associated
           protein) [Roseobacter litoralis Och 149]
          Length = 226

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 110/261 (42%), Gaps = 73/261 (27%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL---NGQLYRPDHSL--VDAVTDSWDK- 74
           ++II G++ +VL+ +   SVDL+  DPPY +      G+  + D++L  V  V +   + 
Sbjct: 4   NQIINGDAAAVLKTIEEGSVDLVITDPPYLVNYKDRQGRSLQNDNNLGGVLPVFEPMARA 63

Query: 75  ---------FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
                    FS + A   FT+AW  A                                 I
Sbjct: 64  MKQSSYAICFSGWSALPQFTQAWEAA------------------------------GLKI 93

Query: 126 LNDIVW-RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
           +++IVW +K      F   R ++A+  L   +P+  A+  +            VQ    W
Sbjct: 94  VSEIVWSKKYTSRRGFTQYRHESAY-VLAKGNPAKPARPMS-----------SVQ---GW 138

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           +              G K HPT+K   +L+ ++   +KPGD++ DPF GS ++   A   
Sbjct: 139 VY------------SGNKRHPTEKAVEILAPLVRCFSKPGDLVCDPFSGSDSTSVAAVLN 186

Query: 245 RRSFIGIEMKQDYIDIATKRI 265
            R ++GIE+++ + + A  R+
Sbjct: 187 GRDYLGIELEKAHCETARARL 207


>gi|254466011|ref|ZP_05079422.1| adenine specific DNA methylase Mod [Rhodobacterales bacterium Y4I]
 gi|206686919|gb|EDZ47401.1| adenine specific DNA methylase Mod [Rhodobacterales bacterium Y4I]
          Length = 508

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/48 (58%), Positives = 36/48 (75%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           T KPE L+ RIL  +T PGD++LD F GSGT+ AVA K+ R +IG+EM
Sbjct: 300 TPKPERLIQRILHIATNPGDLVLDSFLGSGTTAAVAHKMGRRWIGVEM 347


>gi|260581888|ref|ZP_05849684.1| twin-argninine leader-binding protein DmsD [Haemophilus influenzae
           NT127]
 gi|260095081|gb|EEW78973.1| twin-argninine leader-binding protein DmsD [Haemophilus influenzae
           NT127]
          Length = 752

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 43/63 (68%), Gaps = 2/63 (3%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRI 265
           +KPE LL  IL  +TK GDIILD   GSGT+ AVA K+ R +IGIE + DYI  +A +R+
Sbjct: 558 KKPEQLLKIILDCATKKGDIILDFHLGSGTTAAVAHKMNRQYIGIE-QMDYIKTLAVERL 616

Query: 266 ASV 268
             V
Sbjct: 617 KKV 619


>gi|170724675|ref|YP_001758701.1| DNA methylase N-4/N-6 domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169810022|gb|ACA84606.1| DNA methylase N-4/N-6 domain protein [Shewanella woodyi ATCC 51908]
          Length = 510

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 40/63 (63%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T KPE L+ RIL  ++K GD++LD F GSGT+ AV+ K+ R FIGIE+ +    +   R 
Sbjct: 303 TPKPEKLIQRILNIASKEGDLVLDSFLGSGTTSAVSAKMNRKFIGIELGEHAESLCVHRQ 362

Query: 266 ASV 268
             V
Sbjct: 363 KKV 365


>gi|154249196|ref|YP_001410021.1| DNA methylase N-4/N-6 domain-containing protein [Fervidobacterium
           nodosum Rt17-B1]
 gi|154153132|gb|ABS60364.1| DNA methylase N-4/N-6 domain protein [Fervidobacterium nodosum
           Rt17-B1]
          Length = 846

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 42/63 (66%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T+  E LL R++ S++  GD+++D F GSGT+ AVA KLRR +IG+EM + +  +   R+
Sbjct: 642 TENSEILLKRVIESTSNEGDLVMDFFLGSGTTIAVAHKLRRKWIGVEMGEHFYTVVLPRM 701

Query: 266 ASV 268
             V
Sbjct: 702 KKV 704


>gi|322369912|ref|ZP_08044474.1| modification methylase [Haladaptatus paucihalophilus DX253]
 gi|320550248|gb|EFW91900.1| modification methylase [Haladaptatus paucihalophilus DX253]
          Length = 342

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 116/262 (44%), Gaps = 27/262 (10%)

Query: 35  LPAKSVDLIFADPPYNL-QLNGQLYRPDHSLVDAVTDSWDKFSSFE-AYDAFTRAWLLAC 92
           LP  S+DL+   PPY + ++   L+   +  ++    + D  ++FE  +D     W    
Sbjct: 17  LPDDSIDLVVTSPPYPMIEMWDDLFADANPEIETALSAGDGDTAFELMHDELDAVWA-EL 75

Query: 93  RRVLKPNG---------TLWVIGSYHNIFRIGTMLQNL---NFWILNDIVWRK-SNPMPN 139
            RVLKP G         T  V G++ +      +L++L       L DI+WRK SN +  
Sbjct: 76  VRVLKPGGIAVINVGDATRKVDGTFQSFPNHAHVLRDLRERGLKSLPDILWRKPSNRLTK 135

Query: 140 FRGRRF--QNA-----HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI---C 189
           F G      NA     HE L+    +   + +    D    ++   + R++W   +    
Sbjct: 136 FMGSGMLPPNAYAALEHEYLL-VFRNGDTREFEPGVDHRYESSYFWEERNEWFSDLWTDV 194

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
            G E+L +    +      P  L  R++   +  GD +LDPF+G+GT+   A    R+ +
Sbjct: 195 RGEEQLLDHGDLRERSAAFPFELPYRLISMFSVYGDTVLDPFWGTGTTSLAAMVAGRNSV 254

Query: 250 GIEMKQDYIDIATKRIASVQPL 271
           G E++ D++++  +R  +   L
Sbjct: 255 GYELEPDFVELFAERAETTPEL 276


>gi|239616473|ref|YP_002939795.1| DNA methylase N-4/N-6 domain protein [Kosmotoga olearia TBF 19.5.1]
 gi|239505304|gb|ACR78791.1| DNA methylase N-4/N-6 domain protein [Kosmotoga olearia TBF 19.5.1]
          Length = 683

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 40/56 (71%)

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           N+ G +L   +KPEALL RI+  ST+  DI+LD F G+GT+ AVA K+ R +IG+E
Sbjct: 485 NEGGVRLKEGKKPEALLKRIIELSTEENDIVLDFFMGTGTTCAVAHKMGRQYIGVE 540


>gi|289764488|ref|ZP_06523866.1| DNA methylase N-4/N-6 [Fusobacterium sp. D11]
 gi|289716043|gb|EFD80055.1| DNA methylase N-4/N-6 [Fusobacterium sp. D11]
          Length = 395

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 42/63 (66%), Gaps = 2/63 (3%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI-DIATKRI 265
           QK E L+ RI+ +ST  GD ILD   GSGT+ AVA K+ R +IGIE + DYI DI  +R+
Sbjct: 209 QKSEKLIERIIKNSTMEGDTILDFHLGSGTTAAVAHKMGRRYIGIE-QMDYIEDIVVERL 267

Query: 266 ASV 268
             V
Sbjct: 268 KKV 270


>gi|270308833|ref|YP_003330891.1| adenine-specific DNA-methyltransferase-like protein
           [Dehalococcoides sp. VS]
 gi|270154725|gb|ACZ62563.1| adenine-specific DNA-methyltransferase-like protein
           [Dehalococcoides sp. VS]
          Length = 312

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 116/296 (39%), Gaps = 74/296 (25%)

Query: 7   LAINENQNSIFEWKDKIIKGNSISV--------LEKLPAKSVDLIFADPPYNLQLNGQLY 58
           L  N NQ+S  E+ +  I  + ++         +  LP  SV L+   PPYN+   G+ Y
Sbjct: 37  LYKNINQHSTLEFTENPIDPDKLNKIWCKSSENMNDLPDNSVHLMVTSPPYNV---GKEY 93

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG--- 115
             D SL +              Y +  R       RVL P G   +     NI  IG   
Sbjct: 94  DKDLSLTE--------------YRSLLRNVFSEVYRVLVPGGRACI-----NIANIGRKP 134

Query: 116 ---------TMLQNLNFWILNDIVWRK----------------SNPMPNFRGRRFQNAHE 150
                    +   ++ F +  +I+W K                SNP         ++ HE
Sbjct: 135 YLPLHSYIISDCLDIGFLMRGEIIWNKASSSGTSCAWGSWKSPSNP-------SLRDTHE 187

Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQM-RSDWLIPICSGSERLRNKDGEKLHPTQKP 209
            ++    +   +  T ++ +  + +E ++  +S W  P  S       K G   HP   P
Sbjct: 188 YILVFCKNSYTRKATKSHISTISRDEFLEYTKSVWTFPTESAK-----KVG---HPAPFP 239

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
             L  R++   T   DI+LDPF GSG +   A K  R +I  ++ + Y+ ++ KRI
Sbjct: 240 VELPYRLIQLYTYEHDIVLDPFSGSGATCIAALKTNRYYISYDIDESYVKLSEKRI 295


>gi|15611823|ref|NP_223474.1| putative type II DNA modification enzyme (methyltransferase)
           [Helicobacter pylori J99]
 gi|4155312|gb|AAD06327.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
           [Helicobacter pylori J99]
          Length = 272

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 100/269 (37%), Gaps = 61/269 (22%)

Query: 33  EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLAC 92
            KL  +S+D+I   PPY                       D   +++ Y           
Sbjct: 27  HKLQNESIDMILTSPPY-----------------------DNLRNYQGYTFAFENIANEI 63

Query: 93  RRVLKPNGTL-WVIGS-------YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
            RV+K  G + W++G            FR     Q + F + + +++ K N  P  R   
Sbjct: 64  FRVIKKGGVVVWIVGDKIKNGNKSLTSFRQALYFQQIGFNMHDVMIYAKKNT-PFMRSNA 122

Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM------------------------ 180
           + NA+E +   S   K K  TFN      A   ++M                        
Sbjct: 123 YTNAYEYMFVLS---KGKPKTFNPLKEPTARNGMEMLVTNKGADAKNNKILKELKKEKTK 179

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
            + W   +  G     N      HP   PE L    ++S +   DI+ DP  GSGT+  +
Sbjct: 180 NNIWHYAVGLGGST--NDKIAFNHPAIFPEQLALDHILSWSNERDIVFDPMCGSGTTCKM 237

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           A    R+FIG+++ ++YI IA KR+   Q
Sbjct: 238 AFLHNRNFIGVDISKEYIQIAQKRLQQYQ 266


>gi|150021564|ref|YP_001306918.1| DNA methylase N-4/N-6 domain-containing protein [Thermosipho
           melanesiensis BI429]
 gi|149794085|gb|ABR31533.1| DNA methylase N-4/N-6 domain protein [Thermosipho melanesiensis
           BI429]
          Length = 846

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 42/63 (66%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T+  E LL R++ S++  GD+ILD F GSGT+ AVA KL+R +IG+EM + +  +   R+
Sbjct: 642 TENSEILLKRVIESTSNEGDLILDFFLGSGTTTAVAHKLKRKWIGVEMGEHFWTVVLPRM 701

Query: 266 ASV 268
             V
Sbjct: 702 KKV 704


>gi|282866406|ref|ZP_06275451.1| DNA methylase N-4/N-6 domain protein [Streptomyces sp. ACTE]
 gi|282558802|gb|EFB64359.1| DNA methylase N-4/N-6 domain protein [Streptomyces sp. ACTE]
          Length = 248

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 104/254 (40%), Gaps = 41/254 (16%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPY------NLQLNGQLYRPD-------HSLVDAVTDS 71
           +G++++VL+ LP +SVD +  DPPY      +    G+  R         H L +   ++
Sbjct: 7   RGDALTVLKSLPDQSVDAVITDPPYNSGGRTSADRTGRTARAKYVTSNSAHDLANFPGEN 66

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
            D+ S    Y ++    L    R    +    V   +         LQ   +     + W
Sbjct: 67  RDQRS----YRSWLTELLTESYRASTEHAVAMVFTDWRQEPTTTDALQMAGWTWSGTMPW 122

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
            K    P   G +  +  E ++W       KG   N         D+ +   +   I S 
Sbjct: 123 IKPASRPRKGGPKQDS--EFIVWG-----VKGSLDN-------TRDLYLPGHY---IASQ 165

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
             + R      +H TQKP  ++ + LV     G  +LDPF GSG++G  A +  R F+G+
Sbjct: 166 PRKSR------VHITQKPVEIMQQ-LVQVCPEGGTVLDPFTGSGSTGVAALREGRRFVGV 218

Query: 252 EMKQDYIDIATKRI 265
           E+   Y D+A +R+
Sbjct: 219 ELSSHYADVAEERL 232


>gi|171060836|ref|YP_001793185.1| DNA methylase N-4/N-6 domain-containing protein [Leptothrix
           cholodnii SP-6]
 gi|170778281|gb|ACB36420.1| DNA methylase N-4/N-6 domain protein [Leptothrix cholodnii SP-6]
          Length = 553

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/51 (54%), Positives = 37/51 (72%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           PT KPE LL RI   +T PGD++LD F GSGT+GAVA K+ R +I +E+ +
Sbjct: 311 PTPKPERLLHRIFSIATNPGDLVLDSFAGSGTTGAVAHKMGRRWIMVELGE 361


>gi|227833763|ref|YP_002835470.1| hypothetical protein cauri_1939 [Corynebacterium aurimucosum ATCC
           700975]
 gi|262184838|ref|ZP_06044259.1| hypothetical protein CaurA7_12648 [Corynebacterium aurimucosum ATCC
           700975]
 gi|227454779|gb|ACP33532.1| hypothetical protein cauri_1939 [Corynebacterium aurimucosum ATCC
           700975]
          Length = 261

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 3/63 (4%)

Query: 198 KDGE---KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           KDG+   K+HPTQKP AL+ R++   T PGD+++DP  GSG++   A+ L R   G E+K
Sbjct: 169 KDGKHIPKVHPTQKPVALIERLIELFTDPGDVVIDPCAGSGSTLVAAENLGRRGYGFEIK 228

Query: 255 QDY 257
           +D+
Sbjct: 229 KDF 231


>gi|85703022|ref|ZP_01034126.1| DNA methylase N-4/N-6 [Roseovarius sp. 217]
 gi|85671950|gb|EAQ26807.1| DNA methylase N-4/N-6 [Roseovarius sp. 217]
          Length = 457

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 102/228 (44%), Gaps = 41/228 (17%)

Query: 42  LIFADPPYNLQLNGQLYRPD--HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99
           L+  DPPY     G +Y PD  +    + T    K  + +  D +  AW       L P 
Sbjct: 234 LMVTDPPY-----GVMYDPDWRNRAGASETKRTGKVLNDDRAD-WRAAW------ALFPG 281

Query: 100 GTLWVIGSYHNIFRIGTMLQNL---NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
              +V   +H      T+ ++L    F I + I+W K   + + RG  +   HE   +A 
Sbjct: 282 DVAYV---WHGALHATTVAESLVASGFDIRSQIIWAKDRHVLS-RGH-YHWQHEPAWYAV 336

Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
              +AKG+          + D +  + W IP        R++D E  H TQKP   + R 
Sbjct: 337 ---RAKGHW---------SGDRKQSTLWSIPN-------RDQDAETSHGTQKPVECMRRP 377

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           +++++ PG ++ +PF GSGT+   A+  +R    IE+   Y+D+A  R
Sbjct: 378 ILNNSSPGQVVYEPFCGSGTTLIAAQSTKRIGFAIELDPAYVDVAVLR 425


>gi|306819881|ref|ZP_07453535.1| adenine specific DNA methylase Mod [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304552128|gb|EFM40065.1| adenine specific DNA methylase Mod [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 523

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 36/50 (72%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           T KPE L+ R+L  ++  GD++LD F GSGT+ AVA K+ R +IGIEM +
Sbjct: 302 TPKPERLIERVLTLASDKGDLVLDSFLGSGTTAAVAHKMNRKYIGIEMGE 351


>gi|330445064|ref|ZP_08308717.1| DNA methylase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489255|dbj|GAA03214.1| DNA methylase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 347

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 37/52 (71%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           HP +KP  LL  ++ +S++   I+LD F GSG++G V +K+ R FIGIEM++
Sbjct: 285 HPCEKPADLLEHVIAASSREDAIVLDAFMGSGSAGKVCRKMNRQFIGIEMEE 336



 Score = 45.4 bits (106), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 20/125 (16%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           +++  + +  L+ LP  SVDL+  DPPY                    ++WD ++   E+
Sbjct: 12  QLVNADCLDYLKTLPDSSVDLVLTDPPY---------------FQVKKNAWDNQWPDVES 56

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVI-GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           + A+    L+   RVLKP+G+L++  GS   +     +L    F +L+ IVW K N  P 
Sbjct: 57  FLAWLDEVLVEFWRVLKPSGSLYLFCGS--KLASDTELLIRSRFNVLSHIVWAKPNG-PW 113

Query: 140 FRGRR 144
            R R+
Sbjct: 114 LRQRK 118


>gi|327461138|gb|EGF07471.1| prophage LambdaSa04 protein [Streptococcus sanguinis SK1057]
          Length = 422

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 113/265 (42%), Gaps = 45/265 (16%)

Query: 20  KDKIIKGNSISVLEK----LPAKSVDLIFADPPYNLQLN---GQLYRPDHSLVDAVTDSW 72
           K ++I G+S   LE     L  K  +L+  DPPYN+ +    G++   D S  D      
Sbjct: 172 KHRVICGDSTK-LETYQLLLGDKKANLVVTDPPYNVNVEETAGKIKNDDMSDAD------ 224

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
                   +  F     +   + ++ + +++V  +           ++  F++    VW+
Sbjct: 225 --------FYQFLFNMFVNVEQSMEDDASIYVFHADTEGLNFRKAFKDAGFYLSGCCVWK 276

Query: 133 KSNPMPNFRGRR-FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
           K+  +    GR  +Q  HE +++     K K   F+         D +  + W       
Sbjct: 277 KNALV---LGRSPYQWQHEPVLYGWKQ-KGKHQWFS---------DRKQTTIW------- 316

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
            E  R K   K HPT KP  L++  + +S+  G +ILDPF GSG++   A +  R   GI
Sbjct: 317 -EYDRPK-SSKEHPTMKPVQLMAYPIQNSSMRGTLILDPFLGSGSTLIAADQTGRVCYGI 374

Query: 252 EMKQDYIDIATKRIASVQPLGNIEL 276
           E+ + ++D+  KR        +++L
Sbjct: 375 ELDEKFVDVIVKRYMEATEKSDVQL 399


>gi|315932575|gb|EFV11507.1| DNA methylase family protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 336

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 6/103 (5%)

Query: 168 YDALKAANEDVQMRSDWLIPICS--GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
           Y  + A  +   M+  W IP  +    ER+  ++    + TQKPEALL RI+ +S+    
Sbjct: 107 YKVVYADVDGKPMKDVWAIPFINPVSIERIEVEN----NLTQKPEALLQRIIKASSNENS 162

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           I+ D   GSGT+ A A KL+R ++G+EM + +  +   R+  V
Sbjct: 163 IVFDYHLGSGTTIATAHKLKRKWLGVEMGEHFYKVIIPRMKKV 205


>gi|291529735|emb|CBK95321.1| DNA modification methylase [Eubacterium rectale M104/1]
          Length = 307

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 104/254 (40%), Gaps = 29/254 (11%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G  +S+LE    KS+D I  D P+           D       + ++ ++  FE    +T
Sbjct: 70  GRDLSILED---KSIDCIITDHPW----------LDKKANKGGSRNFAQYDCFE----YT 112

Query: 86  RAWLLACRRVLKPNGTLWVI------GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            A  +   RVLK    L  I       +Y  ++R+  M +   F   + + W+K   + N
Sbjct: 113 PADFIEKARVLKQGSFLCEIIPAESATNYEYLYRLKKMAEAAGFQYYSKVPWKKGTFVSN 172

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD--WLIPICSGSERLRN 197
             GR+ +N  + LI+ S  P  K        L A     +  S    ++P     +++  
Sbjct: 173 -TGRKAKNTEDCLIF-SLGPARKLRPDKQRGLDANGNPTRFMSGAAGMLPTEFDYQQVSK 230

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           KD  ++  ++KP  L   ++   TKP +I+LD F GSG  G  A    R  +  E   + 
Sbjct: 231 KD--RIAQSEKPVELFETLIGYLTKPEEIVLDQFAGSGVCGEAAINTGRGCVLFEKVHEL 288

Query: 258 IDIATKRIASVQPL 271
            D    R+    P+
Sbjct: 289 CDKICDRLGLTAPV 302


>gi|325687751|gb|EGD29772.1| prophage LambdaSa04, DNA methylase [Streptococcus sanguinis SK72]
          Length = 422

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 113/265 (42%), Gaps = 45/265 (16%)

Query: 20  KDKIIKGNSISVLEK----LPAKSVDLIFADPPYNLQLN---GQLYRPDHSLVDAVTDSW 72
           K ++I G+S   LE     L  K  +L+  DPPYN+ +    G++   D S  D      
Sbjct: 172 KHRVICGDSTK-LETYQLLLGDKKANLVVTDPPYNVNVEETAGKIKNDDMSDAD------ 224

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
                   +  F     +   + ++ + +++V  +           ++  F++    VW+
Sbjct: 225 --------FYQFLFNMFVNVEQSMEDDASIYVFHADTEGLNFRKAFKDAGFYLSGCCVWK 276

Query: 133 KSNPMPNFRGRR-FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
           K+  +    GR  +Q  HE +++     K K   F+         D +  + W       
Sbjct: 277 KNALV---LGRSPYQWQHEPVLYGWKQ-KGKHQWFS---------DRKQTTIW------- 316

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
            E  R K   K HPT KP  L++  + +S+  G +ILDPF GSG++   A +  R   GI
Sbjct: 317 -EYDRPK-SSKEHPTMKPVQLMAYPIQNSSMRGTLILDPFLGSGSTLIAADQTGRVCYGI 374

Query: 252 EMKQDYIDIATKRIASVQPLGNIEL 276
           E+ + ++D+  KR        +++L
Sbjct: 375 ELDEKFVDVIVKRYMEATEKSDVQL 399


>gi|295114924|emb|CBL35771.1| DNA modification methylase [butyrate-producing bacterium SM4/1]
          Length = 411

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 107/247 (43%), Gaps = 38/247 (15%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
           K  +  VL  +  K  +L+  DPPYN+   G   +  +  + A     +KF  F   DAF
Sbjct: 177 KAETYEVL--MQGKKANLVVTDPPYNVNYEGTAGKIKNDNMAA-----EKFYQF-LLDAF 228

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
           T        +V+  + +++V  +            +  F++    +W+K + +    GR 
Sbjct: 229 TNM-----EKVMAEDASIYVFHADTEGLNFRRAFTDAGFYLSGCCIWKKPSLV---LGRS 280

Query: 145 -FQNAHETLIWA-SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
            +Q  HE +++    + K + Y+           D +  + W        +  +N D   
Sbjct: 281 PYQWQHEPVLYGWKKNGKHQWYS-----------DRKQTTIWEF-----EKPRKNAD--- 321

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPT KP  LL+  + +S+    +ILDPF GSG++    ++  RS   IE+ + Y D+  
Sbjct: 322 -HPTMKPIPLLAYPITNSSMSNTLILDPFGGSGSTLIACEQTDRSCCTIELDEKYCDVII 380

Query: 263 KRIASVQ 269
           KR   ++
Sbjct: 381 KRYVELK 387


>gi|266623396|ref|ZP_06116331.1| putative site-specific DNA methyl transferase [Clostridium
           hathewayi DSM 13479]
 gi|288864822|gb|EFC97120.1| putative site-specific DNA methyl transferase [Clostridium
           hathewayi DSM 13479]
          Length = 322

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 102/239 (42%), Gaps = 27/239 (11%)

Query: 39  SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKP 98
           S+D I  D PY L+         +SL     D    F+S++ +  +T+  L    RVLK 
Sbjct: 98  SIDAIITDHPYLLK---------NSLKGGNRD----FASYDLF-QYTQEDLDEKFRVLKK 143

Query: 99  NGTLWVI------GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL 152
              L          +Y  ++++  M +   F     + W+K N + N  GR+ +N  +  
Sbjct: 144 GHFLVEFLPEENGDNYEYLYQVKAMAKESGFSYYAKVAWKKGNFVAN-TGRKAKNTEDIF 202

Query: 153 IWASPSPKAKGYTFNYDALKAANE--DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
            ++    K +      DA K   E       S     + +  +      GE++H  +KP 
Sbjct: 203 FFS----KGRARDMRPDAKKDKAEPGTCHYMSGVKGMLPTAFDIQPPPKGERVHQAEKPV 258

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            LL +I+   T   ++ILD + GS +    A  L R  I IE+ QDY +   KRI +V+
Sbjct: 259 KLLKQIIEFVTNEKELILDQYAGSFSLAEAALDLDRDSISIEISQDYFEEGKKRIENVK 317


>gi|304383381|ref|ZP_07365847.1| DNA (cytosine-5-)-methyltransferase [Prevotella marshii DSM 16973]
 gi|304335549|gb|EFM01813.1| DNA (cytosine-5-)-methyltransferase [Prevotella marshii DSM 16973]
          Length = 439

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 107/261 (40%), Gaps = 35/261 (13%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
            V+  +  +  D+I  DPPYN+   G     D+ L     DS +     + +  F ++  
Sbjct: 202 DVVALMNGRVADMILTDPPYNVNYEGG---GDNKLT-IQNDSMEN----DLFLRFLQSVF 253

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNA 148
                ++KP G+ +V  +          ++   F I    +W K   +    GR+ +Q  
Sbjct: 254 NMMFTIIKPGGSFYVFHADSEGENFRRAIREAGFKIAQCCIWAKDTLV---MGRQDYQWQ 310

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
           HE  +          Y +   A    N D +  + W                 K+HPT K
Sbjct: 311 HEPCL----------YGWKPGAAHFWNADRKQTTIW---------NFDKPKANKIHPTMK 351

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           P AL++  + +STK G+I++D F GSG++    ++  R   G+E+   Y+    +R  ++
Sbjct: 352 PVALMAYPITNSTKNGNIVVDMFSGSGSTIMACQQTDRIGYGMEIDPKYVAATVRRFMAM 411

Query: 269 QPLGNIEL----TVLTGKRTE 285
            P   + L     +L+   TE
Sbjct: 412 FPQQPVLLERDGAILSASETE 432


>gi|327314476|ref|YP_004329913.1| DNA (cytosine-5-)-methyltransferase [Prevotella denticola F0289]
 gi|326945918|gb|AEA21803.1| DNA (cytosine-5-)-methyltransferase [Prevotella denticola F0289]
          Length = 429

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 116/287 (40%), Gaps = 47/287 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF-SSF 78
           K  +I G+S  + E L  +SV LI   PPY              L D  T++   F + +
Sbjct: 6   KHIVINGDSRQMSE-LEDESVHLIVTSPPY------------WQLKDYGTENQIGFHNDY 52

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWV-IG------SYHNIFRIGTM-------LQNLNFW 124
           E Y          C RVL     L + IG      +Y+  ++I  +        + +   
Sbjct: 53  ETYINHLNLVWKECFRVLHKGCRLCINIGDQFARSTYYGRYKIIPIHTEIIKFCETIGLD 112

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL----KAANEDVQM 180
            +  I+W+K   M    G         ++ + P+P+      +++ +    K  N     
Sbjct: 113 FMGQIIWQKVTTMNTSGG-------ANIMGSYPNPRNGIVKLDFEYILLFKKQGNAPKPS 165

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQK--------PEALLSRILVSSTKPGDIILDPFF 232
           R      I +  E     +G    P  K        PE L  R++   + PG+ +LDPF 
Sbjct: 166 REQKENSIMTNEEWNTYFNGHWYFPGAKQDKHLAMFPEELPHRLIKMFSFPGETVLDPFM 225

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
           GSGT+   A+ L R+ +G E+ QD+I I  +RI +      +E+ ++
Sbjct: 226 GSGTTALAARNLNRNSVGYEINQDFIPIIRERIENNDVFTEVEMEII 272


>gi|240128406|ref|ZP_04741067.1| putative type III restriction/modification system modification
           methylase [Neisseria gonorrhoeae SK-93-1035]
          Length = 212

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           ++N  GEK     KPE L+   +  +T   DI+LD   GSGT+ AVA K+ R +IGIE +
Sbjct: 1   MKNLFGEKAFKNPKPEELIQDFITITTNENDIVLDYHLGSGTTAAVAHKMNRQYIGIE-Q 59

Query: 255 QDYID-IATKRIASV 268
            DYI+ +A +R+  V
Sbjct: 60  MDYIETLAVERMKKV 74


>gi|227874929|ref|ZP_03993081.1| DNA methylase N-4/N-6 domain protein [Mobiluncus mulieris ATCC
           35243]
 gi|227844506|gb|EEJ54663.1| DNA methylase N-4/N-6 domain protein [Mobiluncus mulieris ATCC
           35243]
          Length = 446

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 125/299 (41%), Gaps = 46/299 (15%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV------TDS 71
           +++  G +++ L  L    A  VD ++ DPPYN Q +       H     +       D 
Sbjct: 47  NRLYVGENLAALGALAGEFAGGVDCVYIDPPYNSQADYVAKMALHGDGGQILEQKQYGDR 106

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDI 129
           WD       Y  F    L A R +L   G+++V   +H    +  +   +  +  +LN+I
Sbjct: 107 WDD----AQYLQFMFERLGALRELLADTGSIFVHCDWHAAASLRLVCDEVFGSRNLLNEI 162

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA--------------N 175
           VW   +   + R    +  H+T+++ + +  A+   F+ DA++                 
Sbjct: 163 VWIYGSGGGSRRRFGRK--HDTILFYAKN--ARRNFFDPDAVRVPYRAAIAPKRRGLFHP 218

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
           E +     W IP      R  N     + +PTQKP A++ R L  +  PG ++LD F GS
Sbjct: 219 EGMVAPDVWDIP------RPPNHATSWVGYPTQKPLAVMERALRGACPPGGLVLDCFAGS 272

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS------VQPLGNIELTVLTGKRTEPR 287
           G++   A  L   FIG+E     + +A KR+ S      V   G+  L  L  KR  P 
Sbjct: 273 GSTLVAAAGLGLRFIGVECAALGVHLARKRLVSLGASFGVWRSGDTHLMNLGDKRQPPH 331


>gi|308183495|ref|YP_003927622.1| putative type III restriction enzyme M protein [Helicobacter pylori
           PeCan4]
 gi|308065680|gb|ADO07572.1| putative type III restriction enzyme M protein [Helicobacter pylori
           PeCan4]
          Length = 633

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 40/57 (70%), Gaps = 1/57 (1%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           KPEAL+  IL  ST   D++LD F GSGT+ AVA K++R +IGIE + DYI+  TK 
Sbjct: 453 KPEALIMDILNFSTNENDLVLDFFAGSGTTCAVAHKMKRRYIGIE-QMDYIETITKE 508


>gi|300869254|ref|ZP_07113847.1| DNA methylase N-4/N-6 domain protein [Oscillatoria sp. PCC 6506]
 gi|300332745|emb|CBN59045.1| DNA methylase N-4/N-6 domain protein [Oscillatoria sp. PCC 6506]
          Length = 450

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 60/100 (60%), Gaps = 6/100 (6%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +PT+K   LL R++++S+ PGD++LD F GSGT+ AVA+ L R +I I+  +  ++    
Sbjct: 311 YPTEKNPELLKRMIIASSNPGDLVLDAFAGSGTTAAVAEDLGRQWIAIDNAKLALETMVW 370

Query: 264 RIA-SVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPG 302
           R+A   +P+G+     L G   +P+   +L  E  +++ G
Sbjct: 371 RLAKGTEPMGDF----LKGNDDQPK-QISLFDENRVLKSG 405



 Score = 41.2 bits (95), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 21/155 (13%)

Query: 21  DKIIKGNSISVLEKL-----PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           +K+I G+++ VL  L      A  V L++ DPPY    N      DH+  D        F
Sbjct: 56  NKLIYGDNLRVLRALLDDANIAGKVSLVYIDPPYATGANFASRNLDHAYND--------F 107

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW---R 132
                Y  + R  L+  R +L  +G+++V    +  F +  ++  + F I N   W   +
Sbjct: 108 REGAEYLEYIRCRLILMRELLADDGSIYVHLDENMAFPVKILMDEI-FGIKNFRNWITRK 166

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
           K NP  N+  R++ N  + +++ S   K + Y +N
Sbjct: 167 KCNPK-NYTRRQYGNVSDYILFYS---KTEQYIWN 197


>gi|224538891|ref|ZP_03679430.1| hypothetical protein BACCELL_03787 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519498|gb|EEF88603.1| hypothetical protein BACCELL_03787 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 288

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 100/270 (37%), Gaps = 50/270 (18%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
            + I  +  +P   V+ I   PPYNL      Y              D   +F  ++   
Sbjct: 25  ADCIETMNNMPQGVVNTIVTSPPYNLSKKYGKY--------------DDSRTFAEWEELI 70

Query: 86  RAWLLACRRVLKPNGTLWVIGS------YHNIFRIGTM----LQNLNFWILNDIVWRKSN 135
                A   VL PNG+  +  S         I  +  +     +   + + N IVW  +N
Sbjct: 71  DKVAEAAYNVLVPNGSFLLNVSPVPDKKTKEIVPLDAIAYFVFKKHGYALRNSIVWHFNN 130

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA--------------------N 175
            M N   R      E+++W         Y FN D ++                      N
Sbjct: 131 -MQNCTNR-LSGRWESILWFVKD--IDSYQFNLDDIRVPYITKNDKRLTGVGRNPTDIWN 186

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
            D+     W     +     +NK G   HP   P  ++ RI+  +T  G++++DPF GSG
Sbjct: 187 FDIPESDFWYFDRVNN--MTKNKLGLTEHPCIFPTPMIERIIKMTTHKGEVVMDPFLGSG 244

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T+   A+ L R  +G E+ + +  I  KR+
Sbjct: 245 TTLVAAQNLGRIGLGCELDEKFAPIIEKRV 274


>gi|262403655|ref|ZP_06080213.1| putative DNA methylase [Vibrio sp. RC586]
 gi|262350159|gb|EEY99294.1| putative DNA methylase [Vibrio sp. RC586]
          Length = 349

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 41/65 (63%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP+ LL  I+  S++  D++LD F GSG++G     L R FIGIEM+++  + A  
Sbjct: 285 HPCEKPQDLLQHIISVSSRENDVVLDAFMGSGSTGKACLSLNRCFIGIEMEEETFEQALA 344

Query: 264 RIASV 268
            + ++
Sbjct: 345 SMKNI 349



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 20/158 (12%)

Query: 12  NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
           +Q+++ + +  +I  + ++ L+KL   SVDLI  DPPY      Q+ R      +A  + 
Sbjct: 2   HQHTLHDGRATLIHADCLTYLKKLEDNSVDLILTDPPY-----FQVKR------NAWDNQ 50

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           W   +SF A+       LL   RVLKP+G+L++            +++N  F + N I+W
Sbjct: 51  WPDVASFLAW---LDEVLLEFWRVLKPSGSLYLFCGSKLASDTEILIRN-RFEVFNHIIW 106

Query: 132 RK-SNP---MPNFRGRRFQNAHETLIWASPSPKAKGYT 165
            K S P   M     R F  A E +++A     A+GY 
Sbjct: 107 AKPSGPWRRMHKPDLRMFFPATERILFAG-HYNAEGYA 143


>gi|308234572|ref|ZP_07665309.1| DNA (cytosine-5-)-methyltransferase [Atopobium vaginae DSM 15829]
          Length = 637

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 2/69 (2%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI-D 259
           + +  T K E L+ RIL  +T  GD++ D F GSGT+ AVA K+ R +IG+E + DYI D
Sbjct: 447 DSIFDTPKQERLIERILTLATNEGDLVFDSFVGSGTTAAVAHKMGRRYIGVE-QMDYIQD 505

Query: 260 IATKRIASV 268
           I  +R+  V
Sbjct: 506 ITVERLKKV 514



 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 31/160 (19%)

Query: 5   NSLAINENQNSIFEWKDK-IIKGNSI----SVLEKLPAKSVDLIFADPPYNLQLNGQLYR 59
           N++ + E     F   D  IIKGN++    S+L++   K V  I+ DPPYN Q       
Sbjct: 172 NTINVEEETGITFNDNDNLIIKGNNLIALASLLKRYEGK-VKCIYIDPPYNTQ------- 223

Query: 60  PDHSLVDAVTDSWDKFSSF--EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
                     DS++   SF    +  F +  L   R++L+ +GT+W+    H    +  +
Sbjct: 224 ---------NDSFNYNDSFNHSTWLTFMKNRLELARKLLREDGTIWISCDDHESHYLKVL 274

Query: 118 LQNL----NFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
             ++    NF  +++IVW+++    N + +    +H+ ++
Sbjct: 275 TDDVFNRDNF--IDEIVWQRAYAPINLK-KTLSRSHDIIL 311


>gi|325478683|gb|EGC81794.1| DNA (cytosine-5-)-methyltransferase [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 412

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 114/262 (43%), Gaps = 38/262 (14%)

Query: 20  KDKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K K++ G+S   +  EKL  +S  +LI  DPPYN+   G       S      D+ ++  
Sbjct: 168 KHKLVCGDSTDETTYEKLMKESKANLIITDPPYNVNYEG-------SAGKIKNDNMEQSK 220

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            +E    F  +  L   + L  +G+++V  +           Q+  F++    +W+K + 
Sbjct: 221 FYE----FLLSSFLNMEKFLADDGSIYVFHADTEGLNFRKAFQDAGFYLSGTCIWKKQSL 276

Query: 137 MPNFRGRR-FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           +    GR  +Q  HE +++     K KG    Y   K +             I    +  
Sbjct: 277 V---LGRSPYQWQHEPILYGW---KKKGKHNWYTGRKEST------------IWEFDKPR 318

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +N D    HPT KP  LLS  + +S+    I+LDPF GSG++    ++  R    IE+ +
Sbjct: 319 KNGD----HPTMKPIPLLSYPIKNSSMTNAIVLDPFGGSGSTLIACEQTDRICRMIELDE 374

Query: 256 DYIDIATKR-IASVQPLGNIEL 276
            ++D+   R I SV    ++ L
Sbjct: 375 KFVDVIVNRFIESVGSDKDVSL 396


>gi|317010061|gb|ADU80641.1| putative type III restriction enzyme M protein [Helicobacter pylori
           India7]
          Length = 629

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           G   ++N    K+    K E L+ RIL  ST   D++LD F GSGT+ AVA K++R +IG
Sbjct: 432 GGLHIKNLFNNKIFAYPKSEHLIQRILEVSTNENDLVLDFFAGSGTTCAVAHKMKRRYIG 491

Query: 251 IEMKQDYIDIATK 263
           IE + DYI+  TK
Sbjct: 492 IE-QMDYIETITK 503


>gi|289549055|ref|YP_003474043.1| DNA methylase N-4/N-6 domain protein [Thermocrinis albus DSM 14484]
 gi|289182672|gb|ADC89916.1| DNA methylase N-4/N-6 domain protein [Thermocrinis albus DSM 14484]
          Length = 841

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 42/63 (66%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T+  E LL R++ S++  GD+++D F GSGT+ AVA KL+R +IG+EM + +  +   R+
Sbjct: 639 TENSEILLKRVIESTSNEGDLVMDFFLGSGTTTAVAHKLKRKWIGVEMGEHFYTVVLPRM 698

Query: 266 ASV 268
             V
Sbjct: 699 KKV 701


>gi|257085292|ref|ZP_05579653.1| DNA methylase [Enterococcus faecalis Fly1]
 gi|256993322|gb|EEU80624.1| DNA methylase [Enterococcus faecalis Fly1]
 gi|315579551|gb|EFU91742.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0630]
          Length = 422

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 21/246 (8%)

Query: 26  GNSISVLEKL-PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
              +S +EKL   K  +L+  DPPYN+ +       + S  + + +  D  S  E +D F
Sbjct: 180 ATKLSDVEKLLQGKKANLVVTDPPYNVAVKSDNKELNESGREKIMN--DDMSD-EEFDQF 236

Query: 85  TRAWLLACRRVLKPNGTLWVI--GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
             +        ++ +  ++V    SY   F     +     ++ +  +W K+N    +  
Sbjct: 237 LMSVFQNYSNAMRDDSAIYVFHGSSYQREFE--NSMNAAGIFVRSQCIWVKNNATFGWSQ 294

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR---SDWLIPICSGSERLRNKD 199
            R+Q  HE + +A    +A  +  +        +D+      + W +P        R+  
Sbjct: 295 YRWQ--HEPVFYAHKKKQAPAWYGDRKQTTVWQDDLLEDLPATIWKVP--------RDDV 344

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
               HPTQKP +L++  + +S+K  DI+LD F GSG++    ++L R    +E+   + D
Sbjct: 345 ATYYHPTQKPLSLIAIPVRNSSKRQDIVLDLFGGSGSTLMTCEQLNRICYTLELDPLFCD 404

Query: 260 IATKRI 265
           +  +R 
Sbjct: 405 VIIERF 410


>gi|162455643|ref|YP_001618010.1| adenine DNA methyltransferase [Sorangium cellulosum 'So ce 56']
 gi|161166225|emb|CAN97530.1| adenine DNA methyltransferase [Sorangium cellulosum 'So ce 56']
          Length = 338

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 1/102 (0%)

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
           +V + + W  P   G ER + +D   +H  QKP  LL RI+ +S+ PGD++ +PF G  +
Sbjct: 237 EVGVTNVWQEPAVRGPERFK-EDTRSIHGNQKPLKLLDRIIRASSDPGDVVWEPFGGLCS 295

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278
               A    R     E+   Y  +A++R+A   P   +E++ 
Sbjct: 296 VAVAAFNAGRRCYSAEIAPTYHAVASRRLAKCAPQPRVEISA 337


>gi|315587257|gb|ADU41638.1| methylase [Helicobacter pylori 35A]
          Length = 632

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 40/57 (70%), Gaps = 1/57 (1%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           KPEAL+  IL  ST   D++LD F GSGT+ AVA K++R +IGIE + DYI+  TK 
Sbjct: 452 KPEALIMDILNFSTNENDLVLDFFAGSGTTCAVAHKMKRRYIGIE-QMDYIETITKE 507


>gi|208434731|ref|YP_002266397.1| DNA methylase [Helicobacter pylori G27]
 gi|208432660|gb|ACI27531.1| DNA methylase [Helicobacter pylori G27]
          Length = 272

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 105/276 (38%), Gaps = 62/276 (22%)

Query: 27  NSISVLE-KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           N ++ ++ KL  +S+D+I   PPY                       D   +++ Y    
Sbjct: 20  NCVNFMQHKLQNESIDMILTSPPY-----------------------DNLRNYQGYTFAF 56

Query: 86  RAWLLACRRVLKPNGTL-WVIGS-------YHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
                   RV+K  G + W++G            FR     Q + F + + +++ K N  
Sbjct: 57  ENIANEIFRVIKRGGVVVWIVGDKIKNGNKSLTSFRQALYFQQIGFNMHDVMIYAKKNT- 115

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM----------------- 180
           P  R   + NA+E +   S   K K  TFN      A   ++M                 
Sbjct: 116 PFMRSNAYTNAYEYMFVLS---KGKPKTFNPLKEPTARNGMEMLVTNKGADAKNNKILKE 172

Query: 181 -------RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
                   + W   +  G     N      HP   PE L    ++S +   DI+ DP  G
Sbjct: 173 LKKEKTKNNIWHYAVGLGGST--NDKIAFNHPAIFPEQLALDHILSWSNERDIVFDPMCG 230

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           SGT+  +A    R+FIG+++ ++YI IA KR+   Q
Sbjct: 231 SGTTCKMAFLHNRNFIGVDISKEYIQIAQKRLQQYQ 266


>gi|328944361|ref|ZP_08241824.1| adenine specific DNA methylase Mod [Atopobium vaginae DSM 15829]
 gi|327491076|gb|EGF22852.1| adenine specific DNA methylase Mod [Atopobium vaginae DSM 15829]
          Length = 557

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 2/69 (2%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI-D 259
           + +  T K E L+ RIL  +T  GD++ D F GSGT+ AVA K+ R +IG+E + DYI D
Sbjct: 447 DSIFDTPKQERLIERILTLATNEGDLVFDSFVGSGTTAAVAHKMGRRYIGVE-QMDYIQD 505

Query: 260 IATKRIASV 268
           I  +R+  V
Sbjct: 506 ITVERLKKV 514



 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 29/159 (18%)

Query: 5   NSLAINENQNSIFEWKDK-IIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRP 60
           N++ + E     F   D  IIKGN++  L  L  +    V  I+ DPPYN Q        
Sbjct: 172 NTINVEEETGITFNDNDNLIIKGNNLIALASLLKRYEGKVKCIYIDPPYNTQ-------- 223

Query: 61  DHSLVDAVTDSWDKFSSF--EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
                    DS++   SF    +  F +  L   R++L+ +GT+W+    H    +  + 
Sbjct: 224 --------NDSFNYNDSFNHSTWLTFMKNRLELARKLLREDGTIWISCDDHESHYLKVLT 275

Query: 119 QNL----NFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
            ++    NF  +++IVW+++    N + +    +H+ ++
Sbjct: 276 DDVFNRDNF--IDEIVWQRAYAPINLK-KTLSRSHDIIL 311


>gi|313844059|ref|YP_004061722.1| hypothetical protein OlV1_089 [Ostreococcus lucimarinus virus OlV1]
 gi|312599444|gb|ADQ91466.1| hypothetical protein OlV1_089 [Ostreococcus lucimarinus virus OlV1]
          Length = 305

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 41/65 (63%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           H + KP  L+  ++   TK   I+LDPF GSGT+   A K  R +IG ++ Q+Y+DI+ K
Sbjct: 238 HLSVKPVDLIEHLIQLFTKKDAIVLDPFMGSGTTAVAAVKSNRKYIGFDINQEYVDISNK 297

Query: 264 RIASV 268
           R+ SV
Sbjct: 298 RLLSV 302


>gi|307291440|ref|ZP_07571324.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0411]
 gi|306497671|gb|EFM67204.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0411]
 gi|315033855|gb|EFT45787.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0017]
          Length = 422

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 21/246 (8%)

Query: 26  GNSISVLEKL-PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
              +S +EKL   K  +L+  DPPYN+ +       + S  + + +  D  S  E +D F
Sbjct: 180 ATKLSDVEKLLQGKKANLVVTDPPYNVAVKSDNKELNESGREKIMN--DDMSD-EEFDQF 236

Query: 85  TRAWLLACRRVLKPNGTLWVI--GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
             +        ++ +  ++V    SY   F     +     ++ +  +W K+N    +  
Sbjct: 237 LMSVFQNYSNAMRDDSAIYVFHGSSYQREFE--NSMNAAGIFVRSQCIWVKNNATFGWSQ 294

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR---SDWLIPICSGSERLRNKD 199
            R+Q  HE + +A    +A  +  +        +D+      + W +P        R+  
Sbjct: 295 YRWQ--HEPVFYAHKKKQAPAWYGDRKQTTVWQDDLLEDLPATIWKVP--------RDDV 344

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
               HPTQKP +L++  + +S+K  DI+LD F GSG++    ++L R    +E+   + D
Sbjct: 345 ATYYHPTQKPLSLIAIPVRNSSKRQDIVLDLFGGSGSTLMTCEQLNRICYTLELDPLFCD 404

Query: 260 IATKRI 265
           +  +R 
Sbjct: 405 VIIERF 410


>gi|289450512|ref|YP_003475499.1| DNA (cytosine-5-)-methyltransferase [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289185059|gb|ADC91484.1| DNA (cytosine-5-)-methyltransferase [Clostridiales genomosp. BVAB3
           str. UPII9-5]
          Length = 632

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 2/71 (2%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           D + +  T K E+L+ RI+  ST   DI+LD F GSGT+ AVA K+ R +IG+E + DYI
Sbjct: 440 DTKNVFSTPKSESLIERIISISTNEKDIVLDFFTGSGTTAAVAHKMGRRYIGVE-QMDYI 498

Query: 259 -DIATKRIASV 268
            DI  +R+  V
Sbjct: 499 QDITVERLKKV 509


>gi|54296174|ref|YP_122543.1| hypothetical protein lpp0197 [Legionella pneumophila str. Paris]
 gi|53749959|emb|CAH11344.1| hypothetical protein lpp0197 [Legionella pneumophila str. Paris]
          Length = 646

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 7/79 (8%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +PTQKP ALL RI+ +S+  GD+I D F GSGT+G  A+KL R +I +++ +  I  + K
Sbjct: 320 YPTQKPIALLERIITTSSNTGDLIADFFCGSGTAGLAAEKLGRRWIMVDLGRFAIHTSRK 379

Query: 264 RIAS-------VQPLGNIE 275
           R+         VQ LG  E
Sbjct: 380 RLLDINSTPFIVQNLGKYE 398


>gi|300916082|ref|ZP_07132854.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 115-1]
 gi|300416575|gb|EFJ99885.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 115-1]
          Length = 282

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 114/283 (40%), Gaps = 74/283 (26%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN-----------------------GQL 57
           + +  G+SI +++K+  +S  LI +D PY +  +                       G +
Sbjct: 14  NSVTNGDSIELIKKVQTQSAHLILSDIPYGIGADDWDVLHKNSNNAYLGSSPAQKSAGAI 73

Query: 58  YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
           ++     ++  +D+ D+    E Y  +   W     R LKP  +  +        R    
Sbjct: 74  FKKRGKPINGWSDA-DRKIPLE-YQQWCEEWASEWYRTLKPGASAIIFAGRRFSHRCICA 131

Query: 118 LQNLNFWILNDIVWRKSNP---------MPNFRGRRF-------------QNAHETLIWA 155
           ++N  F + + I W ++           +   RG ++             Q   E ++W 
Sbjct: 132 MENAGFNLRDIIAWMRTKAPHRAQRLSCVYERRGDQYNKEKWDGWRVGNLQPTFEPILWF 191

Query: 156 SPSPKAKGY-----------TFNYDALKAAN---EDVQMRSDWLIPICSGSERLRNKDGE 201
           S   K  G             +N DA  A N   E+V         I +G ER  N+ G 
Sbjct: 192 SKPYKIGGTIADNVLLHGVGAYNQDAFTARNGKPENV---------IHAGFER--NEGG- 239

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
            LHPTQKP +L+  ++  +T+ G +++DPF GSG++   AK+L
Sbjct: 240 -LHPTQKPVSLMKALIELTTQEGQLVIDPFSGSGSTLVAAKEL 281


>gi|78777552|ref|YP_393867.1| site-specific DNA-methyltransferase (adenine-specific)
           [Sulfurimonas denitrificans DSM 1251]
 gi|78498092|gb|ABB44632.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Sulfurimonas denitrificans DSM 1251]
          Length = 378

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 123/309 (39%), Gaps = 81/309 (26%)

Query: 18  EWKDKIIKGNSISVLEKLPAKS-----------VDLIFADPPYNLQLNGQLYRPDHSLVD 66
           EWK+++I G++I V++ L A             +DLI+ DPP++ + +   YR   +L +
Sbjct: 62  EWKNRLIYGDNILVMQGLLAGDATSGLESMRGKIDLIYIDPPFDSKAD---YRTKITLPN 118

Query: 67  -------------AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
                        A  D+W   +   +Y       L+  R +L   G+++V   +H    
Sbjct: 119 INLSQKPTVIEQFAYADTWKDGTV--SYLKMIYPRLVLMRELLSEKGSIYVHIDWHVGHY 176

Query: 114 IGTMLQNL--NFWILNDIVWRKSNPMPNFRGR---RFQNAHETLIWASPSPKAKGYTFNY 168
           +  +L ++       N+I+W  S       GR   +F   H+ +     S  A    FN 
Sbjct: 177 VKILLDDIFGKGKFRNEIIWHYST-----LGRPKDKFAQKHDQIFVYGKSDDA---FFNT 228

Query: 169 DALKAANEDVQMRSD----------------------------------WLIPICSGSER 194
           +  K    D  + S                                   W IP  +   +
Sbjct: 229 EEAKIPYSDDYIESHFRDIDDNGKKCRKRFDAGKWRIYYPDEGMIPNDVWDIPYENSMSK 288

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            R       + TQKP AL+ RI+ SST  G +I D F GSGT+  VA++L R +I  ++ 
Sbjct: 289 ERVS-----YATQKPVALMERIIKSSTIKGQLIADFFGGSGTTAVVAERLNRQWISSDIG 343

Query: 255 QDYIDIATK 263
           +  I +  K
Sbjct: 344 KPSIMVQRK 352


>gi|314055173|ref|YP_004063511.1| putative DNA methylase [Ostreococcus tauri virus 2]
 gi|313575064|emb|CBI70077.1| putative DNA methylase [Ostreococcus tauri virus 2]
          Length = 305

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 41/65 (63%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           H + KP  L+  ++   TK G  ILDPF GSGT+   A K  R +IG ++ Q+Y+DI+ K
Sbjct: 238 HLSVKPVELVEHLIQLFTKRGATILDPFMGSGTTAIAAVKCDRKYIGFDINQEYVDISNK 297

Query: 264 RIASV 268
           R+ S+
Sbjct: 298 RLLSL 302


>gi|190573863|ref|YP_001971708.1| putative DNA methyltransferase [Stenotrophomonas maltophilia K279a]
 gi|190011785|emb|CAQ45405.1| putative DNA methyltransferase [Stenotrophomonas maltophilia K279a]
          Length = 415

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 103/237 (43%), Gaps = 41/237 (17%)

Query: 35  LPAKSVDLIFADPPYNLQL----NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
           L    VD++F DPPYN+        ++   D ++++   +  D F  F          LL
Sbjct: 188 LQGAPVDMVFTDPPYNVNYANSAKDKMRGKDRAILN--DNLGDGFYDF----------LL 235

Query: 91  ACRRVLKPN--GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQN 147
           A    +  N  G ++V  S   +  + +  +         I+W K+       GR  +Q 
Sbjct: 236 AALTQMVANCRGGIYVAMSSSELDVLQSAFRAAGGKWSTFIIWAKNT---FTLGRADYQR 292

Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
            +E +++  P    + +  + D       DV     W         +++      LHPT 
Sbjct: 293 QYEPILYGWPEGAQRHWCGDRD-----QGDV-----W---------QIKKPQKNDLHPTM 333

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           KP  L+ R + +S++PG+++LDPF GSGT+   A+K  R    IE+   Y+D+  +R
Sbjct: 334 KPVELVERAIRNSSRPGNVVLDPFGGSGTTLIAAEKSGRVARLIELDPKYVDVIVRR 390


>gi|83590061|ref|YP_430070.1| site-specific DNA-methyltransferase (adenine-specific) [Moorella
           thermoacetica ATCC 39073]
 gi|83572975|gb|ABC19527.1| Site-specific DNA-methyltransferase (adenine-specific) [Moorella
           thermoacetica ATCC 39073]
          Length = 470

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 120/266 (45%), Gaps = 38/266 (14%)

Query: 23  IIKGNSISVLEKLPAKS----VDLIFADPPYNLQ--------LNGQLYRPDHSLVD--AV 68
           +I+G+++  ++ L  +     + LI+ DPP+  Q        L G     +  +++  A 
Sbjct: 59  LIQGDNLQAMQGLLDRGYEGKIHLIYIDPPFFSQDNYSHRVPLAGTAAGQERRVIERAAY 118

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV-----IGSYHNIFRIGTMLQNLNF 123
            D+W      +AY       L   +R+L  NG+++V     I  Y+ +    T+L    F
Sbjct: 119 RDTWR--GGIDAYLDMLYPRLQLMKRLLASNGSIYVHLDASISHYNWVRNHDTLL----F 172

Query: 124 WILNDIVWR-KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
           ++ +   +      +P   G R + + ET        K KGY  + D   A   + +++ 
Sbjct: 173 YVRDPARFTFNKEYLPYPPGYRRRGSRET--------KGKGYPLD-DVWNANPFEFELKG 223

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           +  +         R K G     TQK  +LL RI+ +S+ PGD++ D F GSGT+   A+
Sbjct: 224 EESLDSIQIKSFSREKTG---FATQKNLSLLRRIIKASSNPGDLVADFFCGSGTTLVAAE 280

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASV 268
            L R ++G E+    + +A KR+ + 
Sbjct: 281 ALDRKWLGCEIGWTGLQVARKRLVAA 306


>gi|315653151|ref|ZP_07906076.1| adenine specific DNA methylase Mod [Lactobacillus iners ATCC 55195]
 gi|315489516|gb|EFU79153.1| adenine specific DNA methylase Mod [Lactobacillus iners ATCC 55195]
          Length = 638

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 2/67 (2%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI-DIA 261
           +  T K E L+ RIL  +T  GD++ D F GSGT+ AVA K+ R +IG+E + DYI DI 
Sbjct: 449 IFDTPKQERLIERILTLATNEGDLVFDSFVGSGTTAAVAHKMGRRYIGVE-QMDYIQDIT 507

Query: 262 TKRIASV 268
            +R+  V
Sbjct: 508 VERLKKV 514


>gi|13487817|ref|NP_108695.1| putative methylase [Lactococcus phage Tuc2009]
 gi|5001703|gb|AAD37103.1|AF109874_9 putative methylase [Bacteriophage Tuc2009]
          Length = 252

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 47/69 (68%)

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           NK   K+HPTQKP+++L R++   T  GD I+DP  GSG++   + +L R+  G E+K+D
Sbjct: 173 NKTIPKIHPTQKPQSVLKRLIEIFTDKGDTIIDPCMGSGSTIRASIELGRNAYGFEIKKD 232

Query: 257 YIDIATKRI 265
           + ++A +++
Sbjct: 233 FYNLAKEKM 241


>gi|331680930|ref|ZP_08381570.1| conserved hypothetical protein [Escherichia coli H299]
 gi|331081918|gb|EGI53076.1| conserved hypothetical protein [Escherichia coli H299]
          Length = 107

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 43/70 (61%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ + Y  
Sbjct: 20  GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHR 79

Query: 260 IATKRIASVQ 269
              +R+A+VQ
Sbjct: 80  AGQQRLAAVQ 89


>gi|76786905|ref|YP_329365.1| prophage LambdaSa04, DNA methylase [Streptococcus agalactiae A909]
 gi|76561962|gb|ABA44546.1| prophage LambdaSa04, DNA methylase [Streptococcus agalactiae A909]
          Length = 412

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 120/272 (44%), Gaps = 45/272 (16%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLN---GQLYRPDHSLVDAVTDSWD 73
           K ++I G+S    +  + L  K  +LI  DPPYN+ +    G++   + S  D     +D
Sbjct: 165 KHRVICGDSTEAETYEQLLGDKKANLIVTDPPYNVDVEETAGKILNDNMSDRDFYQFLFD 224

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
            F+  E++              ++ + +++V  +           ++  F++    +W+K
Sbjct: 225 MFTQVESH--------------MEADASIYVFHADTEGLNFRKAFKDAGFYLSGSCIWKK 270

Query: 134 SNPMPNFRGRR-FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           ++ +    GR  +Q  HE  ++     K K   F+         D +  + W        
Sbjct: 271 NSLV---LGRSPYQWQHEPCLFGWKQ-KGKHQWFS---------DRKQTTIW-------- 309

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           E  R K   K HPT KP  L++  + +S+  G ++ DPF GSG++   A +  R   GIE
Sbjct: 310 EYDRPK-SSKDHPTMKPIQLMAYPIQNSSMRGTLVFDPFLGSGSTLMAADQTGRVCYGIE 368

Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
           + + ++D+  KR   ++   N +++VL    T
Sbjct: 369 LDEKFVDVIVKRY--MESTSNRDVSVLRNGET 398


>gi|315607455|ref|ZP_07882451.1| DNA (cytosine-5-)-methyltransferase domain protein [Prevotella
           buccae ATCC 33574]
 gi|315250887|gb|EFU30880.1| DNA (cytosine-5-)-methyltransferase domain protein [Prevotella
           buccae ATCC 33574]
          Length = 626

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 125/304 (41%), Gaps = 70/304 (23%)

Query: 23  IIKGNSISVLEKLPAK--SVDLIFADPPY--NLQLNGQLY-RPDHSLVDAVT-------- 69
           +++G  +S    L  K   VDL++ DPP+        ++Y R +  + +A+         
Sbjct: 65  VLRGECLSACAYLKEKGVKVDLVYIDPPFASGADYAKKVYIRRNPRVAEAIKQAETELDS 124

Query: 70  ------------DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
                       D WDK    E Y  +    L+A + V+    +++V   +H    IG  
Sbjct: 125 EELRNFEEKMYGDVWDK----ERYLNWMYENLVAIKAVMSDTASIYVHLDWH----IGHY 176

Query: 118 LQNLNFWIL------NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
           ++ L   +       N+++W   N M      RF + H++L + S   K+  +T+N    
Sbjct: 177 VKILMDEVFGEDKFRNEVIWYYYNKMQG-NVNRFASNHDSLFYYS---KSDEFTYNQVKE 232

Query: 172 KAANEDVQMRSDW------LIPICSGSERLRNKDGEKL---------------------H 204
           K A    Q++  W      L+       ++   D ++                      +
Sbjct: 233 KRAETIKQIKRIWDKETQKLVNAKDNQGKVIYVDSDEFTIDDVWRMSMLQPADKNEPVGY 292

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            TQKPEALL RI+ +S+    ++ D F GSG + AVA +L R FI  ++  + I+    R
Sbjct: 293 ATQKPEALLERIIKASSNEDMLVADFFGGSGVTAAVANRLGRRFIHCDIGINSIETTRDR 352

Query: 265 IASV 268
           +  V
Sbjct: 353 LRKV 356


>gi|315029926|gb|EFT41858.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX4000]
          Length = 422

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 102/236 (43%), Gaps = 20/236 (8%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           L  K  +L+  DPPYN+ +       + S  + + +  D  S  E +D F  +       
Sbjct: 190 LQGKKANLVVTDPPYNVAVKSDNKELNESGREKIMN--DDMSD-EEFDQFLMSVFQNYSH 246

Query: 95  VLKPNGTLWVI--GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL 152
            ++ +  ++V    SY   F     +     ++ +  +W K+N    +   R+Q  HE +
Sbjct: 247 AMRDDSAIYVFHGSSYQREFE--NSMNAAGIFVRSQCIWVKNNATFGWSQYRWQ--HEPV 302

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMR---SDWLIPICSGSERLRNKDGEKLHPTQKP 209
            +A    +A  +  +        +D+      + W +P        R+      HPTQKP
Sbjct: 303 FYAHKKKQAPAWYGDRKQTTVWQDDLVEDLPATIWKVP--------RDDVATYYHPTQKP 354

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
            +L++  + +S+K  DI+LD F GSG++    ++L R    +E+   + D+  +R 
Sbjct: 355 LSLIAIPVRNSSKRQDIVLDLFGGSGSTLMTCEQLNRICYTLELDPLFCDVIIERF 410


>gi|270700791|ref|ZP_06223041.1| DNA (cytosine-5-)-methyltransferase [Haemophilus influenzae HK1212]
 gi|270315873|gb|EFA27964.1| DNA (cytosine-5-)-methyltransferase [Haemophilus influenzae HK1212]
          Length = 256

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 48/76 (63%)

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           E+   K+  KLHPTQKP A+L R++   T  GD+++DP  GS ++   A++L R   G E
Sbjct: 181 EKDNRKEIPKLHPTQKPIAVLKRLIEIFTDEGDVVIDPVAGSASTLRAARELNRPSYGFE 240

Query: 253 MKQDYIDIATKRIASV 268
           +K+D   IA +++ ++
Sbjct: 241 IKKDSCKIAKEQMLNI 256


>gi|219850188|ref|YP_002464621.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
           aggregans DSM 9485]
 gi|219544447|gb|ACL26185.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aggregans DSM
           9485]
          Length = 347

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 9/87 (10%)

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           R  W +P         N D E   P + P    +R++   T PGDI+LD F GSGT+   
Sbjct: 263 RGVWYVPSVRA-----NDDHEAKFPIELP----TRVIRLLTDPGDIVLDCFMGSGTTAVA 313

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIAS 267
           A +  R +IGIE+ + Y+++A +RIA+
Sbjct: 314 AIRENRQYIGIEILEKYVNLARQRIAA 340


>gi|77412079|ref|ZP_00788405.1| prophage LambdaW4, DNA methylase [Streptococcus agalactiae CJB111]
 gi|77161884|gb|EAO72869.1| prophage LambdaW4, DNA methylase [Streptococcus agalactiae CJB111]
          Length = 418

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 120/272 (44%), Gaps = 45/272 (16%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLN---GQLYRPDHSLVDAVTDSWD 73
           K ++I G+S    +  + L  K  +LI  DPPYN+ +    G++   + S  D     +D
Sbjct: 171 KHRVICGDSTKSENYEQLLGDKKANLIVTDPPYNVDVEETAGKILNDNMSDRDFYQFLFD 230

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
            F+  E++              ++ + +++V  +           ++  F++    +W+K
Sbjct: 231 MFTQVESH--------------MEADASIYVFHANTEGLNFRKAFKDAGFYLSGSCIWKK 276

Query: 134 SNPMPNFRGRR-FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           ++ +    GR  +Q  HE  ++     K K   F+         D +  + W        
Sbjct: 277 NSLV---LGRSPYQWQHEPCLFGWKQ-KGKHQWFS---------DRKQTTIW-------- 315

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           E  R K   K HPT KP  L++  + +S+  G ++ DPF GSG++   A +  R   GIE
Sbjct: 316 EYDRPK-SSKDHPTMKPIQLMAYPIQNSSMRGTLVFDPFLGSGSTLMAADQTGRVCYGIE 374

Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
           + + ++D+  KR   ++   N +++VL    T
Sbjct: 375 LDEKFVDVIVKRY--MESTSNRDVSVLRNGET 404


>gi|312962033|ref|ZP_07776530.1| DNA modification methylase [Pseudomonas fluorescens WH6]
 gi|311283843|gb|EFQ62427.1| DNA modification methylase [Pseudomonas fluorescens WH6]
          Length = 427

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 38/62 (61%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPT KP  L++ +L   T PG + LDPF GSG++G  A +    FIG E+ + Y+ IA  
Sbjct: 343 HPTVKPTDLMAYLLRLVTPPGGVALDPFMGSGSTGKAAMREGFQFIGCEIDEQYVAIARA 402

Query: 264 RI 265
           RI
Sbjct: 403 RI 404



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 66/168 (39%), Gaps = 34/168 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ-----------LYRPD--------- 61
           +I+ G+ I ++  LP  SVD +  DPPY ++  G+            YR           
Sbjct: 6   QILVGDCIEMMRTLPDNSVDSVVTDPPYGIRFMGKSWDGQDIEARAAYRASMPSHAGACG 65

Query: 62  ----HSLVDAVTDSWD-KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
               H  + A    +D   +   A+ AFT  W   C RVLKP G L    +      +  
Sbjct: 66  PNGGHRSIAAEAGKYDLTPAGMRAFQAFTLEWATECLRVLKPGGHLLSFAAARTYHHMAV 125

Query: 117 MLQNLNFWILNDIVWRKSNPMP---NFRGRR------FQNAHETLIWA 155
            ++   F I + I+W   +  P   N +G+        + AHE +  A
Sbjct: 126 GIEMSGFEIRDQIMWVFGSGFPKSHNLKGKHEGKGTALKPAHEPICMA 173


>gi|302035484|ref|YP_003795806.1| site-specific DNA-methyltransferase N-4/N-6 (phage related)
           [Candidatus Nitrospira defluvii]
 gi|300603548|emb|CBK39878.1| Site-specific DNA-methyltransferase N-4/N-6 (phage related)
           [Candidatus Nitrospira defluvii]
          Length = 413

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 99/236 (41%), Gaps = 39/236 (16%)

Query: 35  LPAKSVDLIFADPPYNLQL----NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
           L    VD++F DPPYN+        ++   D ++++   +  D F  F          LL
Sbjct: 190 LQGSPVDMVFTDPPYNVNYANSAKDKMRGKDRAILN--DNLGDGFYDF----------LL 237

Query: 91  AC--RRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
           A   + V    G ++V  S   +  + +  +         I+W K N     R   +Q  
Sbjct: 238 AALTQMVTHCRGGIYVAMSSSELDVLQSAFRAAGGKWSTFIIWAK-NTFTLGRAD-YQRQ 295

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
           +E +++  P    + +  + D     N                   ++      LHPT K
Sbjct: 296 YEPILYGWPEGAQRHWCGDRDQGDVWN-------------------IKKPQKNDLHPTMK 336

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           P  L+ R + +S++PG+++LDPF GSGT+   A+K  R    IE+   Y+D+  +R
Sbjct: 337 PVELVERAIRNSSRPGNVVLDPFGGSGTTLIAAEKSGRVARLIELDPKYVDVIVRR 392


>gi|304316269|ref|YP_003851414.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777771|gb|ADL68330.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 647

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 124/307 (40%), Gaps = 76/307 (24%)

Query: 23  IIKGNSISVLEKLPAK--SVDLIFADPPY--NLQLNGQLY-RPDHSLVDAVTDS-----W 72
           +I+G  IS    L  +   VDLI+ DPP+        ++Y R +  + +A+  +      
Sbjct: 62  LIRGECISACAYLKEQGIEVDLIYIDPPFASGADYAKKVYIRRNPKVAEAIAQAGKELDI 121

Query: 73  DKFSSFEAYDAFTRAW------------LLACRRVLKPNGTL-----WVIGSYHNIFRIG 115
           ++  +FE    +   W            L+A + V+    ++     W IG Y  I    
Sbjct: 122 EELKTFEE-KMYGDIWRKEDYLNWMYENLMAIKSVMSETASIFVHLYWHIGHYVKILMDE 180

Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRG--RRFQNAHETLIWASPSPKAKGYTFNYDAL-- 171
              ++    ++N+I+W   +   NF+G  + F   H  + W S   K + Y  N   +  
Sbjct: 181 IFGEDK---LINEIIWYYPD---NFQGNVKGFATNHNNIFWYS---KNETYISNKVIIPL 231

Query: 172 -KAANEDVQMRSDWLIPICSGSERLRNKDGEKLH-------------------------- 204
            K    D ++ S  L  + S     RN DG  ++                          
Sbjct: 232 DKPVKRDKRIWSKELGKLVSA----RNDDGTLIYEEFTEKKADDVWTIGQTSVTKSTSNE 287

Query: 205 ----PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
               PTQKPE LL RI+ +ST  G ++ D F GSG + AVA KL R FI  ++  + I  
Sbjct: 288 YMDYPTQKPEELLRRIIEASTNEGMLVADFFGGSGVTAAVANKLGRRFIHCDIGINSIQT 347

Query: 261 ATKRIAS 267
              R+ +
Sbjct: 348 TRDRLIA 354


>gi|212694808|ref|ZP_03302936.1| hypothetical protein BACDOR_04342 [Bacteroides dorei DSM 17855]
 gi|237710921|ref|ZP_04541402.1| DNA methylase N-4/N-6 [Bacteroides sp. 9_1_42FAA]
 gi|212662662|gb|EEB23236.1| hypothetical protein BACDOR_04342 [Bacteroides dorei DSM 17855]
 gi|229454765|gb|EEO60486.1| DNA methylase N-4/N-6 [Bacteroides sp. 9_1_42FAA]
          Length = 408

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 48/71 (67%), Gaps = 1/71 (1%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +PT+K   +L RI+ SS+ PGDI+LD F GSGT+   A++L R +IG+++ ++ I I   
Sbjct: 293 YPTEKNIDMLKRIINSSSNPGDIVLDCFAGSGTTLVAAEELGRQWIGVDIGEEAIKIIQN 352

Query: 264 RIAS-VQPLGN 273
           R  +  +PLG+
Sbjct: 353 RFENGTKPLGD 363



 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 16/140 (11%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           NS+   E +  K +DLI+ DPPYN     +     H+  D  T         E Y  F  
Sbjct: 50  NSLIKDESVCGK-IDLIYIDPPYNTGGAFETRDSKHAYNDNFTT--------EGYIKFME 100

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL----NFWILNDIVWRKSNPMPNFRG 142
             L+   ++L P+G+++V    + +F I  ++ ++    NF     ++ RK     NF  
Sbjct: 101 VRLILMHKLLSPSGSIYVHLDSNMVFHIKILMDSIFGEKNF---RGMITRKKCKSKNFTR 157

Query: 143 RRFQNAHETLIWASPSPKAK 162
             + N  + +++ + S  AK
Sbjct: 158 TTYGNISDYILFYTKSDSAK 177


>gi|199598945|ref|ZP_03212354.1| modification methylase DpnIIB-like protein [Lactobacillus rhamnosus
           HN001]
 gi|199590145|gb|EDY98242.1| modification methylase DpnIIB-like protein [Lactobacillus rhamnosus
           HN001]
          Length = 251

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 7/104 (6%)

Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
           D L   N D QM  +W            +    K+HPTQKP  +L R++   T  GD+++
Sbjct: 153 DKLPKFNNDGQMVFNWF-------RWDTDNTYPKIHPTQKPIPVLKRLIELFTDQGDVVI 205

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
           DP  GSG++   A +L RS  G E+K+D   +A +++ S   L 
Sbjct: 206 DPCAGSGSTLRAAAELGRSCFGFEIKKDMYRLAKEKMLSTMSLA 249


>gi|307352466|ref|YP_003893517.1| DNA methylase N-4/N-6 domain-containing protein [Methanoplanus
           petrolearius DSM 11571]
 gi|307155699|gb|ADN35079.1| DNA methylase N-4/N-6 domain protein [Methanoplanus petrolearius
           DSM 11571]
          Length = 279

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 119/299 (39%), Gaps = 68/299 (22%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N N+NS +   + I   + +  ++K+P   +D+I   PPYN+ +    +  +  L   + 
Sbjct: 5   NINENSEYAELNVIYNVDCLKGMKKIPDNFIDIIVTSPPYNIGIKYNTHNDNQPLDSYL- 63

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT-----------LWVIGSYHNIFRIGTML 118
            +W    S E             +R+LK +G+           LW+     N FR    L
Sbjct: 64  -NWMNLISKEF------------KRILKDDGSIFLNIGGKPSDLWIPFDVLNEFRSDFKL 110

Query: 119 QNLNFWIL----------NDIVWRKSNPMPNFR---GRRF-QNAHETLIWASPSPKAKGY 164
           QN+  WI           N    RK   + +++    +RF    HE +   +     K  
Sbjct: 111 QNIIHWIKSIAIEKKDVGNYDCLRKDMAVGHYKPVNSKRFLSQCHEHIFHLT-----KNC 165

Query: 165 TFNYDAL---------------KAANEDVQMRSD-WLIPICSGSERLRNKDGEKLHPTQK 208
             N D L               K+AN D + R + W IP     E +      + HPT  
Sbjct: 166 DINLDKLSIGVKYQDKSNIGRWKSANSDKRERGNVWFIPY----ETIL---SSRPHPTSF 218

Query: 209 PEALLSR-ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           P  L    I +       +++DPF G G++    KKL  +++G E+ ++Y   A +R+A
Sbjct: 219 PVRLPEMCIKLHGFDEKTVVMDPFMGIGSTALACKKLETNYVGFEIDKEYYKFALERLA 277


>gi|159027337|emb|CAO90522.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 437

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 45/64 (70%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +PT+K  ALLSRI+ +S+ PGD++LD + GSGT+  VA +L R +IG++  Q+ I     
Sbjct: 311 YPTEKNPALLSRIIEASSNPGDLVLDCYAGSGTTLVVASELGRKWIGVDRSQEAITTILH 370

Query: 264 RIAS 267
           R+A+
Sbjct: 371 RMAN 374


>gi|157952314|ref|YP_001497206.1| hypothetical protein NY2A_B010R [Paramecium bursaria Chlorella
           virus NY2A]
 gi|155122541|gb|ABT14409.1| hypothetical protein NY2A_B010R [Paramecium bursaria Chlorella
           virus NY2A]
          Length = 303

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 43/72 (59%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
             N+  +K+HPTQKP  L+ R++ SS+   D++ DPF GSG +  V +K+ R     E+ 
Sbjct: 218 FYNRSVQKIHPTQKPIELIQRLIESSSNENDVVCDPFGGSGVTWYVCQKMNRKCFSCELS 277

Query: 255 QDYIDIATKRIA 266
           ++Y + A   I+
Sbjct: 278 KEYYEKALDAIS 289


>gi|59711656|ref|YP_204432.1| putative DNA methylase [Vibrio fischeri ES114]
 gi|59479757|gb|AAW85544.1| putative DNA methylase [Vibrio fischeri ES114]
          Length = 285

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 36/53 (67%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           HP +KP  LL  I+ SS++ G ++LD F GSG++G     L R F+GIEM+++
Sbjct: 222 HPCEKPANLLEHIIASSSREGAVVLDAFMGSGSTGKACLALNRKFVGIEMEEE 274


>gi|283954854|ref|ZP_06372370.1| site-specific DNA-methyltransferase [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283793694|gb|EFC32447.1| site-specific DNA-methyltransferase [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 181

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 41/64 (64%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+HPTQKP  LL R+++  T  GD+++DP  GSG++   A  L R   G E+K+++ D A
Sbjct: 108 KVHPTQKPVKLLERLIIIFTDVGDVVIDPCAGSGSALLAATNLNRKAYGFEIKKEFFDGA 167

Query: 262 TKRI 265
            K +
Sbjct: 168 NKMM 171


>gi|221369905|ref|YP_002521001.1| DNA methylase N-4/N-6 [Rhodobacter sphaeroides KD131]
 gi|221162957|gb|ACM03928.1| DNA methylase N-4/N-6 [Rhodobacter sphaeroides KD131]
          Length = 120

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 45/72 (62%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           R++D + +H TQKP   + R +++++ PG  I +PF GSGT+   A+   R  +G+E+  
Sbjct: 24  RDQDADTVHGTQKPVECMRRPILNNSSPGQAIYEPFMGSGTTLIAAETTGRVCLGVELNP 83

Query: 256 DYIDIATKRIAS 267
            Y+D+A +R  S
Sbjct: 84  AYVDVAIERWQS 95


>gi|282897342|ref|ZP_06305344.1| DNA modification methylase [Raphidiopsis brookii D9]
 gi|281197994|gb|EFA72888.1| DNA modification methylase [Raphidiopsis brookii D9]
          Length = 357

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 39/62 (62%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP   P  ++  ++   TK GD +LDPF GSGT+   A+ L R ++GIE+  DY+++A  
Sbjct: 284 HPAVYPLYIIQELIKLLTKEGDFVLDPFCGSGTTCIAARNLSRKYLGIEINPDYVNLANN 343

Query: 264 RI 265
           R+
Sbjct: 344 RM 345



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 24/167 (14%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           Q  + +++++II G+++S+L+++   + DLI   PPY  Q +   Y  D+  +   T   
Sbjct: 16  QQQVLDFRNQIILGDNLSILKQIENDTFDLIITSPPYFQQRD---YGNDNLGIGNETTQA 72

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTL-------WVIGSYHNI---FRIGTMLQNLN 122
           +   +       T  W   C RVLK  G +       ++ GS   I   F I    QN +
Sbjct: 73  EYLENI-----LTVFW--ECVRVLKKTGAIVFNLGDKYINGSLSLIPYKFAIQAT-QNQS 124

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
            +++N I+W K NP P    R+   A E     +   K+K Y FN D
Sbjct: 125 IFLINQIMWSKLNPTPRQDKRKLIQATEPFFLFA---KSKDYYFNVD 168


>gi|255103003|ref|ZP_05331980.1| DNA methylase N-4/N-6 domain-containing protein [Clostridium
           difficile QCD-63q42]
 gi|255519121|ref|ZP_05386797.1| DNA methylase N-4/N-6 domain-containing protein [Clostridium
           difficile QCD-97b34]
 gi|255652294|ref|ZP_05399196.1| DNA methylase N-4/N-6 domain-containing protein [Clostridium
           difficile QCD-37x79]
          Length = 256

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 39/69 (56%)

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           NK+   +HPTQKP  LL  ++ + T   +++LD  FGSG+ G     + R F+GIE+  D
Sbjct: 172 NKETNCIHPTQKPVDLLEYLIKTYTNENELVLDNCFGSGSVGIACANINRKFVGIELDSD 231

Query: 257 YIDIATKRI 265
           Y      RI
Sbjct: 232 YFLQGKNRI 240


>gi|307947054|ref|ZP_07662389.1| DNA methylase N-4/N-6 domain-containing protein [Roseibium sp.
           TrichSKD4]
 gi|307770718|gb|EFO29944.1| DNA methylase N-4/N-6 domain-containing protein [Roseibium sp.
           TrichSKD4]
          Length = 470

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 108/256 (42%), Gaps = 22/256 (8%)

Query: 42  LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
           L+F DPPYN+ +NG +            +   + S  E +  F    L A    L     
Sbjct: 222 LLFTDPPYNVPVNGHVSGLGKKTHREFVEGAGEMSR-EGFTGFLTETLSAAASCLCNGAI 280

Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP-MPNFRGRRFQNAHETLIWASPSPK 160
            +V   + ++  +    +     + N  VW K+N  M +F    +++ HE +       K
Sbjct: 281 AFVCMDWRHMREVLDAGEAAFDELKNLCVWNKTNAGMGSF----YRSKHELVFVFK---K 333

Query: 161 AKGYTFNYDALKAANEDVQMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVS 219
            +G   N   L    E+ + R++ W     +     R++D   +HPT KP A++   ++ 
Sbjct: 334 GRGAHLNNFGL---GEEGRYRTNVWDYAGANSFGTSRDED-LAMHPTVKPIAMVKDAILD 389

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
            +K GD ILD F GSG++   A +  R    +E+   Y D+  +R   +   G   L   
Sbjct: 390 CSKRGDAILDVFGGSGSTLIAADQAGRHARLMELDPLYCDVIVRRFQKIT--GKTALHAE 447

Query: 280 TGKRTEPRVAFNLLVE 295
           TGK      +FN L E
Sbjct: 448 TGK------SFNALEE 457


>gi|16273302|ref|NP_439546.1| modification methylase [Haemophilus influenzae Rd KW20]
 gi|1574226|gb|AAC23039.1| modification methylase (hindIIIM) [Haemophilus influenzae Rd KW20]
          Length = 309

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 112/295 (37%), Gaps = 50/295 (16%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ--LYRPDHSLVDAVTDSWDKFSSF 78
           D I   +SI  ++KL + S+  I +D PY +  +    L+   +S +   + +  K S F
Sbjct: 3   DCIYNSDSIXEIKKLDSNSIHAIISDIPYGIDYDDWDILHSNTNSALGGTSSAQHKTSLF 62

Query: 79  ------------------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
                             + Y  +  +W     RVLK   +++V        R+    +N
Sbjct: 63  KRRGKPLNGWSEADKKRPQEYQEWVESWSNEWFRVLKSGSSVFVFAGRQFAHRVVVAFEN 122

Query: 121 LNFWILNDIVWRK----------------------SNPMPNFRGRRFQNAHETLIWASPS 158
             F   + + W K                      +N    +R    +   E ++W    
Sbjct: 123 SGFTFKDMLSWEKDKAPHRAQRISCVFERRGDIANTNKWVGWRVANLRPLFEPILWFQ-K 181

Query: 159 PKAKGYTFNYDALK----AANEDVQMRSDWLIPICSGSERLR---NKDGEKLHPTQKPEA 211
           P   G T   + +K    A NE+     +      + S  L+     + +  H  QKP  
Sbjct: 182 PYKTGSTLADNLIKHEVGAWNENSLTHWNIQQGALNHSNILKVRITSEDKGYHVAQKPLN 241

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           L+  ++   TK   I+LDPF GSGT+   AK+L R FIG E      +IA  R+ 
Sbjct: 242 LMKLLIDLVTKEEQIVLDPFAGSGTTLLAAKELNRHFIGYEKNNGIYNIAVNRLG 296


>gi|270634778|ref|ZP_06222031.1| methylase [Haemophilus influenzae HK1212]
 gi|270317489|gb|EFA28974.1| methylase [Haemophilus influenzae HK1212]
          Length = 84

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 48/76 (63%)

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           E+   K+  KLHPTQKP A+L R++   T  GD+++DP  GS ++   A++L R   G E
Sbjct: 9   EKDNRKEIPKLHPTQKPIAVLKRLIEIFTDEGDVVIDPVAGSASTLRAARELNRPSYGFE 68

Query: 253 MKQDYIDIATKRIASV 268
           +K+D   IA +++ ++
Sbjct: 69  IKKDSCKIAKEQMLNI 84


>gi|312866071|ref|ZP_07726292.1| DNA (cytosine-5-)-methyltransferase [Streptococcus downei F0415]
 gi|311098475|gb|EFQ56698.1| DNA (cytosine-5-)-methyltransferase [Streptococcus downei F0415]
          Length = 296

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 111/296 (37%), Gaps = 66/296 (22%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNL----------------------QLNGQLYRPDHSL 64
           +SI  L ++P  S+  I +D PY +                      Q   +L++     
Sbjct: 10  DSIVGLSRIPTNSIHSIISDIPYGIDYDEWDVLHSNTNSGLGGSSLSQTKNKLFKRRGKP 69

Query: 65  VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
           ++  +++ DK    E Y  +  +W     RVLKP G+ +V        R+   L+   F 
Sbjct: 70  LNGWSEA-DKQRPLE-YQNWVSSWSKEWFRVLKPGGSAFVFAGRKYSHRVIIALEEAGFT 127

Query: 125 ILNDIVWRKSNP-------------------MPNFRGRRFQNAH---ETLIWASPSPKAK 162
             + + W +                        N+ G R  N     E ++W     K  
Sbjct: 128 FKDMLSWERDKAPHRAQRLSKIYERRGDYENQKNWEGWRVANLRPLFEPILWLQKPYKTG 187

Query: 163 GYTFN-----------YDALKA--ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
           G   N            DALK    N+D+  +S+ +I +          D  K H TQKP
Sbjct: 188 GTIANNVLENGVGAWYEDALKKWNINQDMSNQSN-MIKVEF------QPDDRKYHTTQKP 240

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
             L+  ++   T  G +ILDPF GS T+   AK+L R +IG E      +    R+
Sbjct: 241 INLMKLLVELVTVEGQVILDPFAGSATTLLAAKELHRKYIGFEKDTKIFESGLSRL 296


>gi|222112381|ref|YP_002554645.1| DNA methylase n-4/n-6 domain-containing protein [Acidovorax ebreus
           TPSY]
 gi|221731825|gb|ACM34645.1| DNA methylase N-4/N-6 domain protein [Acidovorax ebreus TPSY]
          Length = 425

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 112/256 (43%), Gaps = 50/256 (19%)

Query: 15  SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL----NGQLYRPDHSLV-DAVT 69
           ++ E  D++++G++            D++F DPPYN+        ++   D +++ D + 
Sbjct: 179 TVAESYDRLMQGDA-----------ADMVFTDPPYNVNYANSAKDKMRGKDRAILNDNLG 227

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
           D +        YD F RA L     V   +G ++V  S   +  +    +         I
Sbjct: 228 DGF--------YD-FLRAALTPT--VAHCSGGIYVAMSSSELDVLQAAFRAAGGKWSTFI 276

Query: 130 VWRKSNPMPNFRGRR-FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
           +W K+       GR  +Q  +E +++  P    + +  + D       DV     W I  
Sbjct: 277 IWAKNTFT---LGRADYQRQYEPILYGWPEGAQRHWCGDRD-----QGDV-----WSI-- 321

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
                  +      LHPT KP  L+ R + +S++PG+++LDPF GSGT+   A+K  R  
Sbjct: 322 -------KKPQKNDLHPTMKPVELVERAIRNSSRPGNVVLDPFGGSGTTLIAAEKSGRIA 374

Query: 249 IGIEMKQDYIDIATKR 264
             IE+   Y+D+  +R
Sbjct: 375 RLIELDPKYVDVIVRR 390


>gi|313667109|gb|ADR73002.1| M.BspCNI [Bacillus sp. 1310(2010)]
          Length = 271

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 110/276 (39%), Gaps = 63/276 (22%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +++I+G+ + V++ +P KSVD+I  D PY    N                 WD   S   
Sbjct: 7   NQVIQGDCLEVMKGIPNKSVDMILCDLPYGTTQN----------------KWD---SVIP 47

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
            D   + +    +R+LK NG   ++ +   IF    ML N + W    +VW KS    NF
Sbjct: 48  LDLLWKEY----KRILKDNGV--IVLTSQGIFTANLMLSNPS-WFKYKLVWEKSKAT-NF 99

Query: 141 RGRRFQ--NAHETL-IWASPSPKAKGYTFNYDALKAANEDVQMRSDWL---------IPI 188
              + Q    HE + ++    P      +N         D  +R + L         + +
Sbjct: 100 LNAKKQPLRKHEDICVFYKKQP-----VYNPQMRDGDPYDKGIRKNQLTGSYGDFKPVHV 154

Query: 189 CSGSERL---------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
            S  +R             +G   H TQKP  L   ++ + T  G  +LD   GSG+   
Sbjct: 155 VSDGKRYPTDVIYFKTAESEGTVYHATQKPVELGRYLIRTYTNEGATVLDNACGSGSFLV 214

Query: 240 VAKKLRRSFIGIEM----------KQDYIDIATKRI 265
            A   +R+FIGIE           K D I++  KRI
Sbjct: 215 SAILEKRNFIGIEKNEDVELYKNEKIDLIEVCNKRI 250


>gi|261403553|ref|YP_003247777.1| DNA methylase N-4/N-6 domain protein [Methanocaldococcus vulcanius
           M7]
 gi|261370546|gb|ACX73295.1| DNA methylase N-4/N-6 domain protein [Methanocaldococcus vulcanius
           M7]
          Length = 293

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 116/284 (40%), Gaps = 60/284 (21%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS---S 77
           +KI   + +  +++L  KS+D++   PPYN+ +                  ++K+S   S
Sbjct: 4   NKIYCMDCLEGMKQLKDKSIDVVITSPPYNIGI-----------------RYNKYSDNLS 46

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTL-----------WVIGSYHNIFRIGTMLQNLNFWIL 126
            E Y  +    +   +RVLK +G+            W+     N+ R    LQN   WI 
Sbjct: 47  REDYLNWIEEVVREIKRVLKDDGSFFINVGYTAKDPWIAFDVANVIRKHFKLQNTIHWIK 106

Query: 127 NDIVWRKS-NPMPNFRG-------------RRFQNAHETLIWASPSPKAK------GYTF 166
           +  + ++     PN  G             R     HE +   + +   K      G  +
Sbjct: 107 SIAIQKEDVGDYPNIIGDIAVGHYKPINSDRFLSIMHEYIFHFTKNGNVKLDKLAIGVPY 166

Query: 167 -NYDALKAANEDVQMR---SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR-ILVSST 221
            +   +K  N    +R   + W IP     E +++K+ E+ HP   P  L    I +   
Sbjct: 167 QDKSNIKRFNRKGDLRDRGNTWFIP----YETIQSKEKERPHPATFPPKLPEMCIKLHGV 222

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           K  +++LDPF G G++     +L  ++IG E+ + Y  +A +RI
Sbjct: 223 KKTNLVLDPFMGIGSTAVACIRLGVNYIGFEIDEYYCRVAEERI 266


>gi|195661243|ref|YP_002117711.1| DNA methylase [Lactobacillus phage Lrm1]
 gi|166200957|gb|ABY84344.1| DNA methylase [Lactobacillus phage Lrm1]
          Length = 252

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 7/104 (6%)

Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
           D L   N D QM  +W            +    K+HPTQKP  +L R++   T  GD+++
Sbjct: 154 DKLPKFNNDGQMVFNWF-------RWDTDSTYPKIHPTQKPIPVLKRLIELFTDQGDVVI 206

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
           DP  GSG++   A +L RS  G E+K+D   +A +++ S   L 
Sbjct: 207 DPCAGSGSTLRAAAELGRSCFGFEIKKDMYRLAKEKMLSTMSLA 250


>gi|281425066|ref|ZP_06255979.1| DNA (cytosine-5-)-methyltransferase [Prevotella oris F0302]
 gi|281400910|gb|EFB31741.1| DNA (cytosine-5-)-methyltransferase [Prevotella oris F0302]
          Length = 442

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 97/235 (41%), Gaps = 31/235 (13%)

Query: 37  AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
            ++ D+I  DPPYN+   G         +    DS +     + +  F ++       ++
Sbjct: 212 GRTADMILTDPPYNVNYEGG----GEGKLTIQNDSMEN----DLFLRFLQSVFNVMFAIV 263

Query: 97  KPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNAHETLIWA 155
           KP G+ +V  +          ++   F I    +W K + +    GR+ +Q  HE  +  
Sbjct: 264 KPGGSFYVFHADSEGENFRRAIREAGFKIAQCCIWVKDSLV---MGRQDYQWQHEPCL-- 318

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
                   Y +   A    N D +  + W                 ++HPT KP AL++ 
Sbjct: 319 --------YGWKPGAAHFWNADRKQTTIW---------NFDKPKANRIHPTMKPIALMAY 361

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
            + +STK GD+++D F GSG++    ++  R   G+E+   Y+    +R  ++ P
Sbjct: 362 PITNSTKNGDVVVDLFSGSGSTIMACQQTDRIGYGMEIDPKYVAATVRRFMAMFP 416


>gi|300937905|ref|ZP_07152695.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 21-1]
 gi|300457086|gb|EFK20579.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 21-1]
          Length = 177

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 90/222 (40%), Gaps = 53/222 (23%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPY---LVGFRDRQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R  +  +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ ++                            
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGST 177


>gi|188994727|ref|YP_001928979.1| DNA methylase N-4/N-6 [Porphyromonas gingivalis ATCC 33277]
 gi|188594407|dbj|BAG33382.1| DNA methylase N-4/N-6 [Porphyromonas gingivalis ATCC 33277]
          Length = 544

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 39/61 (63%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           KPE L+S ++  +T+PGD++LD F GSGT+ AVA K+ R +IGIE+          R+  
Sbjct: 320 KPEMLISVLIQCATQPGDLVLDSFLGSGTTAAVAHKMGRRYIGIELGDHAYTHCVPRLKK 379

Query: 268 V 268
           V
Sbjct: 380 V 380


>gi|91215021|ref|ZP_01251993.1| type III restriction-modification system: methylase [Psychroflexus
           torquis ATCC 700755]
 gi|91186626|gb|EAS72997.1| type III restriction-modification system: methylase [Psychroflexus
           torquis ATCC 700755]
          Length = 652

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI-DIATKRI 265
           +KPE LL RI+  +T  GDI+LD F GSGT+  V+ K+ R +IGIE + DYI D+   R+
Sbjct: 466 KKPEELLYRIIKMATNEGDIVLDFFVGSGTTPCVSHKMNRKYIGIE-QMDYIQDLPYNRL 524

Query: 266 ASV 268
             V
Sbjct: 525 VKV 527


>gi|261837491|gb|ACX97257.1| type IIS m4C methylase [Helicobacter pylori 51]
          Length = 233

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 102/232 (43%), Gaps = 45/232 (19%)

Query: 77  SFEAYDAFTRAWL---LACRRVLKPNGTLW-----------VIGSYHN--IFRIG----- 115
           + E Y+ +    L   L C R LKPNG L            V+ +++N  IF +      
Sbjct: 3   ALEKYEDYLLGLLKVWLECYRALKPNGKLCINVPLMPMLKKVLNTHYNRHIFDLHADIQR 62

Query: 116 TMLQNLN--------FWILNDIVWRKSNP--------MPNFRGRRFQNAHETL--IWASP 157
           ++L +LN         ++L+  +W+++NP         P  R    QN  E +       
Sbjct: 63  SILHDLNNTLENKPKMFLLDIYIWKRANPTKRLMFGSYPYPRDFYAQNTIEFIGVFVKDG 122

Query: 158 SPKAKGYTFNYDALKAANEDVQM-RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
            PK         +     E V+  +  W IPI + ++    K     H    P  L  R+
Sbjct: 123 KPKQPTEEQKEQSQLTQEEWVEFTKQIWEIPIPNKNDIAFGK-----HAALMPAELARRL 177

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +   +  GD++LDPF GSGT+   AK L+R+FIG E+ ++Y  +  +++ ++
Sbjct: 178 IRLYSCVGDVVLDPFSGSGTTLREAKLLKRNFIGYELYENYKPLIEQKLGNL 229


>gi|32456042|ref|NP_862209.1| DNA methyltransferase [Enterobacter sp. RFL1396]
 gi|27464468|gb|AAO16095.1| DNA methyltransferase [Enterobacter sp. RFL1396]
          Length = 332

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 62/130 (47%), Gaps = 14/130 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I+  + ++VL+K+P+ S+ LI  DPPY+      +Y       D    +W +  S E   
Sbjct: 27  IVNHDCLTVLKKIPSNSISLILTDPPYHATQKKNIYGDTQFKKDDEYINWMEEISIE--- 83

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
                W    RR+LKPNG+L+         R+  ML    F ILN IVW K N  P F G
Sbjct: 84  -----W----RRILKPNGSLYCFCDSSMSARLEVMLSK-RFNILNHIVWTKPN-QPGFDG 132

Query: 143 RRFQNAHETL 152
            + +   E+L
Sbjct: 133 WKGKMNKESL 142



 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 40/62 (64%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP+ +L+ I+++S+   DIILD F GSG++   AK+ +R  I I++   + D   +
Sbjct: 267 HPAEKPQDMLNHIIMASSYESDIILDCFSGSGSTALSAKRNKRKCISIDIDTHWTDYTER 326

Query: 264 RI 265
           R+
Sbjct: 327 RL 328


>gi|145630146|ref|ZP_01785928.1| putative type III restriction/modification system modification
           methylase [Haemophilus influenzae R3021]
 gi|144984427|gb|EDJ91850.1| putative type III restriction/modification system modification
           methylase [Haemophilus influenzae R3021]
          Length = 277

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 43/62 (69%), Gaps = 2/62 (3%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRIA 266
           KPE L+S  + + T P DI+LD F GSGT+ AVA K+ R +IGIE + DYI+ +A +R+ 
Sbjct: 79  KPETLISFFIKAITTPKDIVLDFFSGSGTTAAVAHKMNRQYIGIE-QMDYIETLAVERMK 137

Query: 267 SV 268
            V
Sbjct: 138 KV 139


>gi|145634213|ref|ZP_01789924.1| twin-argninine leader-binding protein DmsD [Haemophilus influenzae
           PittAA]
 gi|115289038|gb|ABI85528.1| M.Hin1056ModP-3 [Haemophilus influenzae]
 gi|145268657|gb|EDK08650.1| twin-argninine leader-binding protein DmsD [Haemophilus influenzae
           PittAA]
          Length = 681

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRI 265
           +KPE L+ RI+  +T   DIILD   GSGT+ AVA K+ R +IGIE + DYI+ +A +R+
Sbjct: 482 KKPEKLIKRIIELTTNENDIILDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIETLAVERL 540

Query: 266 ASV 268
             V
Sbjct: 541 KKV 543


>gi|261838682|gb|ACX98448.1| type III restriction enzyme M protein [Helicobacter pylori 51]
          Length = 645

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 40/58 (68%), Gaps = 1/58 (1%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           +KPE L+  IL  ST   D++LD F GSGT+ AVA K++R +IGIE + DYI+  TK 
Sbjct: 464 KKPERLIRDILEISTNENDLVLDFFAGSGTTCAVAHKMKRRYIGIE-QMDYIETITKE 520


>gi|167754382|ref|ZP_02426509.1| hypothetical protein ALIPUT_02676 [Alistipes putredinis DSM 17216]
 gi|167659007|gb|EDS03137.1| hypothetical protein ALIPUT_02676 [Alistipes putredinis DSM 17216]
          Length = 262

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 43/71 (60%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           +R+ D  K+HPTQKP  LL R++   T  GD+++DP  GSGT+   A  + R   G E+K
Sbjct: 182 VRDTDTPKIHPTQKPVPLLERLIEIFTDKGDVVIDPCAGSGTTLLAAANMGRKAYGFEIK 241

Query: 255 QDYIDIATKRI 265
           +D+   A  ++
Sbjct: 242 KDFCAEARVKV 252


>gi|110668023|ref|YP_657834.1| site-specific DNA-methyltransferase [Haloquadratum walsbyi DSM
           16790]
 gi|109625770|emb|CAJ52205.1| site-specific DNA-methyltransferase [Haloquadratum walsbyi DSM
           16790]
          Length = 516

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 67/148 (45%), Gaps = 28/148 (18%)

Query: 124 WILND-IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE------ 176
           W L D I+W K    P +   + +N +E +   S   K   + +N D+++  +       
Sbjct: 150 WRLADHIIWDKKRTRPWYAEGKLRNVYEHVSMYS---KEAEFKYNVDSVRETDPEKFGRW 206

Query: 177 --DVQMRSD---------WLIPICSGSERLRNKDGEKL--HPTQKPEALLSRILVSSTKP 223
             D   R +         W  PI    +      G KL  HP+  P  L+SRI+  +T P
Sbjct: 207 WVDYPERYNPSGKVPNNLWSFPIPKQGQW-----GPKLAYHPSPFPPGLISRIIKLATDP 261

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           GD ILDPF G GT+ AVAK L R  IG 
Sbjct: 262 GDTILDPFAGVGTTLAVAKALNRKVIGF 289


>gi|329848438|ref|ZP_08263466.1| modification methylase Cfr9I [Asticcacaulis biprosthecum C19]
 gi|328843501|gb|EGF93070.1| modification methylase Cfr9I [Asticcacaulis biprosthecum C19]
          Length = 359

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 125/361 (34%), Gaps = 119/361 (32%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           M + NSL I      + E +D         VL   P  SVD   + PPY  QL    YR 
Sbjct: 1   MKETNSLMIGGVSMYLGECRD---------VLRTFPDNSVDCCVSSPPY-YQLRD--YR- 47

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV-IG-SYHN-------- 110
                  V       +S +A+ A          RVLKP+GTLW+ IG SY +        
Sbjct: 48  -------VAGQIGLEASPQAFIAVLVEVFREVHRVLKPSGTLWINIGDSYASKPNGSIGA 100

Query: 111 ------------------------------------IFRIGTMLQNLNFWILNDIVWRKS 134
                                                +R+   LQ   +++  DI+W K 
Sbjct: 101 TTLQGSRSSQSEYRRTNALRKTARPTGLKHKDLMGMPWRLAFALQEDGWYLRQDIIWNKL 160

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA-LKAANEDVQMRSDWLIPICSGSE 193
           NPMP     R   +HE +   S S +   Y F+ +A L+  +     R    I    GS 
Sbjct: 161 NPMPESVEDRCTKSHEYIFLLSKSAR---YFFDQEAILEPCSPSTNPRFSQDIINQVGSA 217

Query: 194 R----------------------LRNKDGEKLH------PTQK----------------- 208
           R                      +RNK  E         PT++                 
Sbjct: 218 RANGGTRATVPMKAVGRKFDPGAIRNKSNENFDSHLVVPPTKRNKRSVWSIGTRGFSGAH 277

Query: 209 ----PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
               P  L+   +++    G I+LDPF GSGT+   A K  R  + I++  +Y  +A  R
Sbjct: 278 FATYPVELIEPCILAGCPAGGIVLDPFGGSGTTAIAAHKHGRKAVYIDLNPEYFALARDR 337

Query: 265 I 265
           I
Sbjct: 338 I 338


>gi|254441749|ref|ZP_05055242.1| ParB-like nuclease domain family [Octadecabacter antarcticus 307]
 gi|198251827|gb|EDY76142.1| ParB-like nuclease domain family [Octadecabacter antarcticus 307]
          Length = 438

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 105/237 (44%), Gaps = 38/237 (16%)

Query: 42  LIFADPPYNLQLNGQL-------YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           ++F DPPYN+ + G +       +R  H     +T S   F++F   D         CR 
Sbjct: 195 MVFTDPPYNVPIAGHVSGKGKACHREFHEASGEMTRS--DFTTF--LDEVLTNTSQRCR- 249

Query: 95  VLKPNGTL-WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
               +G + ++   + ++  +    Q      LN  VW K+N      G  +++ HE L+
Sbjct: 250 ----DGAISFICMDWRHMGELLEAGQRAFDAYLNLCVWAKTN---GGMGSLYRSQHE-LV 301

Query: 154 WASPSPKAKGYTFNYDALKAANEDVQM----RSDWLIPICSGSERLRNKDGEKL--HPTQ 207
           +     KA+              +VQ+    R+   +   +G    R    E+L  HPT 
Sbjct: 302 FVFRKGKAQ-----------HRNNVQLGRFGRNRTNVWTYAGVNTFREGRMEELSAHPTA 350

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           KP A++   ++  TK G+++LDPF G G +   A++  R   G+++   YID+A +R
Sbjct: 351 KPVAMVKDAILDVTKRGEVVLDPFLGGGATLMAAEQSGRVAYGMDIDAAYIDVALRR 407


>gi|304437762|ref|ZP_07397712.1| adenine specific DNA methylase Mod [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304369210|gb|EFM22885.1| adenine specific DNA methylase Mod [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 532

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/48 (56%), Positives = 35/48 (72%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           T KPE L+ RIL  ++  GD++LD F GSGT+ AVA K+ R +IGIEM
Sbjct: 305 TPKPERLIQRILQIASNEGDLVLDAFLGSGTTAAVAHKMNRRYIGIEM 352


>gi|225849113|ref|YP_002729277.1| modification methylase, type III R/M system [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643411|gb|ACN98461.1| modification methylase, type III R/M system [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 581

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 42/63 (66%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T+  E LL R++ S++  GD+ILD F GSGT+ AVA KL+R +IG+EM + +  +   R+
Sbjct: 318 TENSEILLKRVIESTSNEGDLILDFFLGSGTTIAVAHKLKRKWIGVEMGEHFWTVVLPRM 377

Query: 266 ASV 268
             V
Sbjct: 378 KKV 380


>gi|116486907|emb|CAH64840.1| DNA methylase [Wolbachia endosymbiont of Drosophila simulans]
          Length = 401

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 40/62 (64%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           LHPT KP  L+ + +V+S++PGD +LDPF GSG++    ++  R    IE+   ++D+  
Sbjct: 314 LHPTMKPVELMEKAIVNSSRPGDTVLDPFSGSGSTLIACERTGRICRTIELDSKFVDVTI 373

Query: 263 KR 264
           KR
Sbjct: 374 KR 375


>gi|332672404|ref|YP_004421648.1| possible methylase [Campylobacter phage NCTC12673]
 gi|327493581|gb|AEA86440.1| possible methylase [Campylobacter phage NCTC12673]
          Length = 392

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 47/79 (59%), Gaps = 7/79 (8%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           I IC    +   K+G      QKPE LL  IL  ST   D+++D F GSGT+ AVA K++
Sbjct: 284 IGICKEGLKTTFKNG------QKPEYLLKIILDLSTNENDLVMDFFAGSGTTLAVAHKMK 337

Query: 246 RSFIGIEMKQDYIDIATKR 264
           R +IGIE + DYI+  TK 
Sbjct: 338 RKWIGIE-QMDYIETITKE 355


>gi|299143877|ref|ZP_07036957.1| type III restriction/modification enzyme, methylase subunit
           [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518362|gb|EFI42101.1| type III restriction/modification enzyme, methylase subunit
           [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 660

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 47/76 (61%)

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           E + N+ G  L   +KPE L+ RI+  ++  GD+ILD   GSGT+ AVA K+ R +IGIE
Sbjct: 462 EGIANEGGVTLKGGKKPEKLIRRIIEMASDKGDLILDYHLGSGTTCAVAHKIGRKYIGIE 521

Query: 253 MKQDYIDIATKRIASV 268
             +   D +T R+ SV
Sbjct: 522 QLKYGKDDSTVRLESV 537


>gi|218961788|ref|YP_001741563.1| putative Modification methylase BamHII (N-4 cytosine-specific
           methyltransferase BamHII) (M.BamHII) [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730445|emb|CAO81357.1| putative Modification methylase BamHII (N-4 cytosine-specific
           methyltransferase BamHII) (M.BamHII) [Candidatus
           Cloacamonas acidaminovorans]
          Length = 273

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 65/300 (21%), Positives = 113/300 (37%), Gaps = 69/300 (23%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I + + +  L+KLP   +DL  + PPY                       D    +  + 
Sbjct: 10  IYQTDCVEGLKKLPENCIDLCVSSPPY-----------------------DGIRDYHGFS 46

Query: 83  AFTRAWLLACRRVLKPNGTLWVI--------GSYHNIFRIGT-MLQNLNFWILNDIVWRK 133
                  +   RV+K  G   ++              FR       N  F +   +++RK
Sbjct: 47  LDLHNVGIELYRVMKEGGIAVMVMQDQTRNFAKSLTTFRTAIDWCDNAGFRLFETLIYRK 106

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV---------QMRSDW 184
                 +   RF+  HE ++      + +   F+ + LK  ++           ++ +  
Sbjct: 107 YGAEGGWWKTRFRVDHEFMLVFLKGQRPQ--YFDKEPLKIPSKHGGKTLTGGGTRLTNGI 164

Query: 185 LIPI---------CSGS--ERLRNKDGEKL---HPTQKPEALLSRILVSSTKPGDIILDP 230
            IP          C G+  E L   DG +L   HP   P+ L    +     P  I+LD 
Sbjct: 165 RIPTRPILINEMKCRGTVWEYLTAGDGSRLKHKHPATFPDKLPYDFIQCFCPPEGIVLDI 224

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAF 290
           F GSGT+   A +L R+F+G E+ ++Y+ +A +RIA            + GK+ E ++ F
Sbjct: 225 FMGSGTTALAAIELNRNFLGFEISEEYVKLAKQRIA------------IEGKKDEDQLMF 272


>gi|116486901|emb|CAH64694.1| DNA methylase [Wolbachia endosymbiont of Drosophila yakuba]
 gi|116486903|emb|CAH64695.1| DNA methylase [Wolbachia endosymbiont of Drosophila santomea]
          Length = 408

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 40/62 (64%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           LHPT KP  L+ + +V+S++PGD +LDPF GSG++    ++  R    IE+   ++D+  
Sbjct: 320 LHPTMKPVELMEKAIVNSSRPGDTVLDPFSGSGSTLIACERTGRICRTIELDSKFVDVTI 379

Query: 263 KR 264
           KR
Sbjct: 380 KR 381


>gi|256617858|ref|ZP_05474704.1| DNA modification methylase [Enterococcus faecalis ATCC 4200]
 gi|307269936|ref|ZP_07551262.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX4248]
 gi|256597385|gb|EEU16561.1| DNA modification methylase [Enterococcus faecalis ATCC 4200]
 gi|306513726|gb|EFM82332.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX4248]
 gi|315148884|gb|EFT92900.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX4244]
          Length = 254

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 47/71 (66%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+HPTQKP  ++ R++   T  GD+++DP  GSG++   A +L R+  G E+K++  ++A
Sbjct: 181 KIHPTQKPIPVIKRLIEIFTDYGDVVIDPCAGSGSTLRAAAELNRNAYGFEIKKEMYEVA 240

Query: 262 TKRIASVQPLG 272
            +++ S  P+G
Sbjct: 241 QEKMLSNIPMG 251


>gi|224535546|ref|ZP_03676085.1| hypothetical protein BACCELL_00410 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522836|gb|EEF91941.1| hypothetical protein BACCELL_00410 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 251

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 2/72 (2%)

Query: 198 KDGE--KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +DGE  K+HPTQKP  LL R++   T  GD+++DP  GSG++   A +L R   G E+K+
Sbjct: 172 RDGETPKIHPTQKPVPLLRRLIEIFTDKGDVVIDPCAGSGSTLLAAAQLGRKGYGFEIKK 231

Query: 256 DYIDIATKRIAS 267
           D+   A + + S
Sbjct: 232 DFFREANRLVLS 243


>gi|240850618|ref|YP_002972018.1| adenine specific DNA methylase Mod [Bartonella grahamii as4aup]
 gi|240267741|gb|ACS51329.1| adenine specific DNA methylase Mod [Bartonella grahamii as4aup]
          Length = 546

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 37/50 (74%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           T KPE L+ RI+  +T PGD+ILD F GSGT+GAVA K+ R +I IE+ +
Sbjct: 310 TPKPERLMERIIQLATNPGDLILDSFAGSGTTGAVAHKMGRKWIMIELGE 359


>gi|30250236|ref|NP_842306.1| adenine specific DNA methylase Mod [Nitrosomonas europaea ATCC
           19718]
 gi|30181031|emb|CAD86221.1| Adenine specific DNA methylase Mod [Nitrosomonas europaea ATCC
           19718]
          Length = 567

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 37/50 (74%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           T KPE LL RIL  +T PGD++LD F GSGT+GAVA K+ R +I +E+ +
Sbjct: 313 TPKPERLLKRILEIATNPGDLVLDSFAGSGTTGAVAHKMGRRWIMVELGE 362


>gi|297242706|ref|ZP_06926644.1| DNA methylase N-4/N-6 domain-containing protein [Gardnerella
           vaginalis AMD]
 gi|296888917|gb|EFH27651.1| DNA methylase N-4/N-6 domain-containing protein [Gardnerella
           vaginalis AMD]
          Length = 411

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 103/240 (42%), Gaps = 36/240 (15%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           L    V+L+  DPPYN+   G   +  +  ++      DKF  F  +++F         +
Sbjct: 185 LENTKVNLVVTDPPYNVNYEGAAGKIKNDNMEN-----DKFYQF-LFNSFVNM-----EQ 233

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNAHETLI 153
            +  + +++V  +           Q+  F++    +W+K + +    GR  +Q  HE  +
Sbjct: 234 AMADDASIYVFHADTEGLNFRKAFQDAGFYLSGCCIWKKPSLV---LGRSPYQWQHEPCL 290

Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL 213
           +     K KG    Y   K         S W        +  +N D    HPT KP ALL
Sbjct: 291 YGW---KKKGKHNWYAGRKET-------SVWEF-----EKSKKNAD----HPTMKPIALL 331

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           +  + +S+    ++LDPF GSG++    ++  R    IE+ + Y D+  KR   ++ +GN
Sbjct: 332 AYPIKNSSMTNSLVLDPFAGSGSTLIACEQTGRICYAIELDEKYCDVIVKRY--IEQVGN 389


>gi|260174933|ref|ZP_05761345.1| putative methylase [Bacteroides sp. D2]
 gi|315923173|ref|ZP_07919413.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313697048|gb|EFS33883.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 251

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 44/73 (60%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           +R+ D  K+HPTQKP  LL R++   T  GD+++DP  GSG++   A +L R   G E+K
Sbjct: 171 VRDNDTPKIHPTQKPVPLLRRLIEIFTDKGDVVIDPCAGSGSTLLAAAQLGRRAYGFEIK 230

Query: 255 QDYIDIATKRIAS 267
           + +   A K + S
Sbjct: 231 KKFFADANKFVLS 243


>gi|305432837|ref|ZP_07401995.1| type III restriction enzyme M protein [Campylobacter coli JV20]
 gi|304443991|gb|EFM36646.1| type III restriction enzyme M protein [Campylobacter coli JV20]
          Length = 820

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 40/57 (70%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
            + +QKPE +L RI+ SS++   +++D F GSGT+ AV+ KL R +IGIEM + + +
Sbjct: 599 FYSSQKPENMLRRIIQSSSEENSVVMDFFVGSGTTLAVSHKLNRKYIGIEMGEHFYE 655


>gi|288817544|ref|YP_003431891.1| DNA methylase [Hydrogenobacter thermophilus TK-6]
 gi|288786943|dbj|BAI68690.1| DNA methylase [Hydrogenobacter thermophilus TK-6]
 gi|308751147|gb|ADO44630.1| DNA methylase N-4/N-6 domain protein [Hydrogenobacter thermophilus
           TK-6]
          Length = 318

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 40/67 (59%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP   P  L  R +   +  GD++LDPF GSGT+    +KL R  +GI++ ++Y+ +A K
Sbjct: 247 HPAPFPLELPLRCIKLFSYEGDLVLDPFVGSGTTMVACRKLNRKGVGIDINKNYLKLAVK 306

Query: 264 RIASVQP 270
           RI  V P
Sbjct: 307 RIKEVSP 313


>gi|239627885|ref|ZP_04670916.1| DNA methylase [Clostridiales bacterium 1_7_47_FAA]
 gi|239518031|gb|EEQ57897.1| DNA methylase [Clostridiales bacterium 1_7_47FAA]
          Length = 60

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 36/50 (72%)

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           ++ +ST+PGDI+LDPF GSGT+     +L R +IG E+ + Y ++A KRI
Sbjct: 2   LIENSTRPGDIVLDPFIGSGTTAVACIELGRQYIGYEINEGYFEVAQKRI 51


>gi|42520448|ref|NP_966363.1| prophage LambdaW4, DNA methylase [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42410187|gb|AAS14297.1| prophage LambdaW4, DNA methylase [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|116486893|emb|CAH64690.1| DNA methylase [Wolbachia endosymbiont of Drosophila melanogaster]
 gi|116486895|emb|CAH64691.1| DNA methylase [Wolbachia endosymbiont of Drosophila melanogaster]
          Length = 408

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 40/62 (64%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           LHPT KP  L+ + +V+S++PGD +LDPF GSG++    ++  R    IE+   ++D+  
Sbjct: 320 LHPTMKPVELMEKAIVNSSRPGDTVLDPFSGSGSTLIACERTGRICRTIELDSKFVDVTI 379

Query: 263 KR 264
           KR
Sbjct: 380 KR 381


>gi|210135555|ref|YP_002301994.1| type III R-M system methyltransferase [Helicobacter pylori P12]
 gi|210133523|gb|ACJ08514.1| type III R-M system methyltransferase [Helicobacter pylori P12]
          Length = 821

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 41/61 (67%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           KPE+L++ IL  +T+  D++ D F GSGT+ AVA KL+R +IGIEM + +  +   R+  
Sbjct: 647 KPESLIATILEHATQENDLVCDFFAGSGTTCAVAHKLKRKYIGIEMGEHFDSVILPRLKK 706

Query: 268 V 268
           V
Sbjct: 707 V 707


>gi|330007888|ref|ZP_08306110.1| DNA (cytosine-5-)-methyltransferase [Klebsiella sp. MS 92-3]
 gi|328535300|gb|EGF61788.1| DNA (cytosine-5-)-methyltransferase [Klebsiella sp. MS 92-3]
          Length = 242

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 41/73 (56%)

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           +K     HPTQKP AL+  ++ + + PGD +LD   GSGT+G   ++  RSFIGIE    
Sbjct: 166 DKQTGNYHPTQKPLALVQYLIETYSNPGDTVLDFTMGSGTAGVACQQTERSFIGIEKDAA 225

Query: 257 YIDIATKRIASVQ 269
               A +R+   Q
Sbjct: 226 IYRTACERMGIKQ 238


>gi|309781002|ref|ZP_07675741.1| prophage LambdaMc01, DNA methyltransferase [Ralstonia sp.
           5_7_47FAA]
 gi|330824601|ref|YP_004387904.1| DNA methylase N-4/N-6 domain-containing protein [Alicycliphilus
           denitrificans K601]
 gi|308920305|gb|EFP65963.1| prophage LambdaMc01, DNA methyltransferase [Ralstonia sp.
           5_7_47FAA]
 gi|329309973|gb|AEB84388.1| DNA methylase N-4/N-6 domain protein [Alicycliphilus denitrificans
           K601]
          Length = 420

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 41/62 (66%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           LHPT KP  L+ R + +S++PG+++LDPF GSGT+   A+K  R    IE+   Y+D+  
Sbjct: 329 LHPTMKPVELVERAIRNSSRPGNVVLDPFGGSGTTLIAAEKSGRVARLIELDPKYVDVIV 388

Query: 263 KR 264
           +R
Sbjct: 389 RR 390


>gi|6729995|pdb|1BOO|A Chain A, Pvuii Dna Methyltransferase (Cytosine-N4-Specific)
          Length = 323

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 117/298 (39%), Gaps = 81/298 (27%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLN---GQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           G+S+ +LE  P +S+ L+   PP+ LQ     G L +  H  VD                
Sbjct: 20  GDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQ--HEYVD---------------- 61

Query: 83  AFTRAWLLACRRV----LKPNGTLWVI--GSY---------HNIFRIGTMLQNLNFWILN 127
                W L+  +V    LKP+G+  V   G+Y         +N   +  M+  + F++  
Sbjct: 62  -----WFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVPARSIYNFRVLIRMIDEVGFFLAE 116

Query: 128 DIVWRKSNPMP------NFRGRRFQNAHETLIWASPS--PKA---KGYTFNYDALKAANE 176
           D  W   + +P      N R  R ++A  T+ W S +  PK+   K      D +K   E
Sbjct: 117 DFYWFNPSKLPSPIEWVNKRKIRVKDAVNTVWWFSKTEWPKSDITKVLAPYSDRMKKLIE 176

Query: 177 DV-QMRSDWLIPICSGSERLRNKD----------------------------GEKLHPTQ 207
           D  +  +    P      +  +KD                            G K HP +
Sbjct: 177 DPDKFYTPKTRPSGHDIGKSFSKDNGGSIPPNLLQISNSESNGQYLANCKLMGIKAHPAR 236

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
            P  L    +   T+P D+++D F GS T+G VA++  R +I  EMK +Y+  +  R 
Sbjct: 237 FPAKLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRF 294


>gi|325266200|ref|ZP_08132884.1| type III restriction/modification system modification methylase
           [Kingella denitrificans ATCC 33394]
 gi|324982430|gb|EGC18058.1| type III restriction/modification system modification methylase
           [Kingella denitrificans ATCC 33394]
          Length = 559

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 2/69 (2%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID- 259
           +K+    KPE+L   I+ S T  GDI+LD   GSGT+ AVA K+ R +IGIE + DYI+ 
Sbjct: 354 DKVFDFPKPESLFQIIIQSCTNQGDIVLDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIET 412

Query: 260 IATKRIASV 268
           +A +R+  V
Sbjct: 413 LAVERLKKV 421


>gi|53803169|ref|YP_115059.1| prophage LambdaMc01, DNA methyltransferase [Methylococcus
           capsulatus str. Bath]
 gi|53756930|gb|AAU91221.1| prophage LambdaMc01, DNA methyltransferase [Methylococcus
           capsulatus str. Bath]
          Length = 421

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 100/237 (42%), Gaps = 41/237 (17%)

Query: 35  LPAKSVDLIFADPPYNLQL----NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
           L    VD++F DPPYN+        ++   D ++++   +  D F  F          LL
Sbjct: 190 LAGDPVDMVFTDPPYNVNYANSAKDKMRGKDRAILN--DNLGDGFHDF----------LL 237

Query: 91  AC--RRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQN 147
           A     V    G ++V  S   +  +    +         I+W K+       GR  +Q 
Sbjct: 238 AALTPTVANCRGAIYVAMSSSELDTLQAAFRAAGGHWSTFIIWAKNTFT---LGRADYQR 294

Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
            +E +++  P    + +  + D       DV     W         +++      LHPT 
Sbjct: 295 QYEPILYGWPEGAQRHWCGDRD-----QGDV-----W---------QIKKPQRNDLHPTM 335

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           KP  L+ R + +S++PG ++LDPF GSGT+   A+K  R    IE+   Y+D+  +R
Sbjct: 336 KPVELVERAIRNSSRPGAVVLDPFGGSGTTLIAAEKAGRVARLIELDPKYVDVIVRR 392


>gi|45932|emb|CAA32026.1| unnamed protein product [Proteus vulgaris]
          Length = 336

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 117/298 (39%), Gaps = 81/298 (27%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLN---GQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           G+S+ +LE  P +S+ L+   PP+ LQ     G L +  H  VD                
Sbjct: 33  GDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQ--HEYVD---------------- 74

Query: 83  AFTRAWLLACRRV----LKPNGTLWVI--GSY---------HNIFRIGTMLQNLNFWILN 127
                W L+  +V    LKP+G+  V   G+Y         +N   +  M+  + F++  
Sbjct: 75  -----WFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVPARSIYNFRVLIRMIDEVGFFLAE 129

Query: 128 DIVWRKSNPMP------NFRGRRFQNAHETLIWASPS--PKA---KGYTFNYDALKAANE 176
           D  W   + +P      N R  R ++A  T+ W S +  PK+   K      D +K   E
Sbjct: 130 DFYWFNPSKLPSPIEWVNKRKIRVKDAVNTVWWFSKTEWPKSDITKVLAPYSDRMKKLIE 189

Query: 177 DV-QMRSDWLIPICSGSERLRNKD----------------------------GEKLHPTQ 207
           D  +  +    P      +  +KD                            G K HP +
Sbjct: 190 DPDKFYTPKTRPSGHDIGKSFSKDNGGSIPPNLLQISNSESNGQYLANCKLMGIKAHPAR 249

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
            P  L    +   T+P D+++D F GS T+G VA++  R +I  EMK +Y+  +  R 
Sbjct: 250 FPAKLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRF 307


>gi|153869324|ref|ZP_01998964.1| DNA modification methylase [Beggiatoa sp. PS]
 gi|152074154|gb|EDN71040.1| DNA modification methylase [Beggiatoa sp. PS]
          Length = 115

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 40/59 (67%), Gaps = 2/59 (3%)

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           + R++++S+  GD ILDPFFGSGT+  V ++L R  IG EM  +YI++   R+  +QP 
Sbjct: 1   MERMILASSNEGDTILDPFFGSGTTLRVCQQLNRKCIGFEMNPEYIELTKNRL--IQPF 57


>gi|319757806|gb|ADV69748.1| prophage LambdaW4, DNA methylase [Streptococcus suis JS14]
          Length = 417

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 115/264 (43%), Gaps = 39/264 (14%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K ++I G+S    +  + L  K V+L+  DPPYN  +     +  +          D   
Sbjct: 171 KHRVICGDSTKAETYDQLLGDKKVNLVVTDPPYNCDVEKTAGKIQN----------DNMG 220

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E Y  F  A        ++ + +++V  +           ++  F++    +W+K++ 
Sbjct: 221 DSEFY-QFLLAMFTQVENHMEADASIYVFHADTEGLNFRKAFKDAGFYLSGCCIWKKNSL 279

Query: 137 MPNFRGRR-FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           +    GR  +Q  HE +++     K K   F+         D +  + W        E  
Sbjct: 280 V---LGRSPYQWRHEPVLYGW-RQKGKHQWFS---------DRKQTTIW--------EYD 318

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           R K   K HPT KP  L++  + +S+  G ++LDPF GSG++   A +  R   GIE+ +
Sbjct: 319 RPK-SSKDHPTMKPIQLMAYPIQNSSMRGTLVLDPFLGSGSTLIAADQTGRICYGIELDE 377

Query: 256 DYIDIATKRIASVQPLGNIELTVL 279
            ++D+  KR   ++   N ++TV+
Sbjct: 378 KFVDVIVKRY--MEATDNTDVTVV 399


>gi|210610977|ref|ZP_03288686.1| hypothetical protein CLONEX_00876 [Clostridium nexile DSM 1787]
 gi|210152202|gb|EEA83209.1| hypothetical protein CLONEX_00876 [Clostridium nexile DSM 1787]
          Length = 565

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 39/57 (68%), Gaps = 1/57 (1%)

Query: 198 KDGEKLHPT-QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           K+G+   P  +KPE LL +I+  +T  GD++LD F GSGT+ A A KL R +IGIEM
Sbjct: 353 KEGDVTFPNGKKPEKLLKQIIEMTTSEGDMVLDSFLGSGTTAATAHKLNRRWIGIEM 409


>gi|194173088|ref|YP_002003732.1| putative adenine methyltransferase [Escherichia phage rv5]
 gi|114796126|gb|ABI79300.1| putative adenine methyltransferase [Escherichia phage rv5]
          Length = 441

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 40/59 (67%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           + N+ G      +KPEALL RIL   T+ GD++LD F GSGT+ AVA K++R +I IE+
Sbjct: 330 IANEGGVSFKNGKKPEALLKRILEMCTREGDLVLDSFGGSGTTAAVAHKMKRRWILIEL 388


>gi|260580772|ref|ZP_05848598.1| DNA methylase [Haemophilus influenzae RdAW]
 gi|1171051|sp|P43871|MTH3_HAEIN RecName: Full=Modification methylase HindIII; Short=M.HindIII;
           AltName: Full=Adenine-specific methyltransferase HindIII
 gi|290943|gb|AAA61959.1| HindIII modification methyltransferase [Haemophilus influenzae]
 gi|260092589|gb|EEW76526.1| DNA methylase [Haemophilus influenzae RdAW]
 gi|301170147|emb|CBW29751.1| modification methylase hindiii (ec 2.1.1.72) (adenine-specific
           methyltransferase hindiii) (m.hindiii) [Haemophilus
           influenzae 10810]
          Length = 309

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 112/295 (37%), Gaps = 50/295 (16%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ--LYRPDHSLVDAVTDSWDKFSSF 78
           D I   +SI  ++KL + S+  I +D PY +  +    L+   +S +   + +  K S F
Sbjct: 3   DCIYNSDSIFEIKKLDSNSIHAIISDIPYGIDYDDWDILHSNTNSALGGTSSAQHKTSLF 62

Query: 79  ------------------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
                             + Y  +  +W     RVLK   +++V        R+    +N
Sbjct: 63  KRRGKPLNGWSEADKKRPQEYQEWVESWSNEWFRVLKSGSSVFVFAGRQFAHRVVVAFEN 122

Query: 121 LNFWILNDIVWRK----------------------SNPMPNFRGRRFQNAHETLIWASPS 158
             F   + + W K                      +N    +R    +   E ++W    
Sbjct: 123 SGFTFKDMLSWEKDKAPHRAQRISCVFERRGDIANTNKWVGWRVANLRPLFEPILWFQ-K 181

Query: 159 PKAKGYTFNYDALK----AANEDVQMRSDWLIPICSGSERLR---NKDGEKLHPTQKPEA 211
           P   G T   + +K    A NE+     +      + S  L+     + +  H  QKP  
Sbjct: 182 PYKTGSTLADNLIKHEVGAWNENSLTHWNIQQGALNHSNILKVRITSEDKGYHVAQKPLN 241

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           L+  ++   TK   I+LDPF GSGT+   AK+L R FIG E      +IA  R+ 
Sbjct: 242 LMKLLIDLVTKEEQIVLDPFAGSGTTLLAAKELNRHFIGYEKNNGIYNIAVNRLG 296


>gi|299134373|ref|ZP_07027566.1| DNA methylase N-4/N-6 domain protein [Afipia sp. 1NLS2]
 gi|298591120|gb|EFI51322.1| DNA methylase N-4/N-6 domain protein [Afipia sp. 1NLS2]
          Length = 765

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 1/86 (1%)

Query: 185 LIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           L  I +   ++ N+  E L + TQKPEALL R++ +S+  GD++ D F GSGT+ AVA+K
Sbjct: 357 LQDIWTDINKIHNQSVELLGYATQKPEALLDRVIRASSNRGDLVADFFCGSGTTAAVAEK 416

Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQ 269
           L R +I  ++ +  +    KR+  VQ
Sbjct: 417 LGRKWIASDLGKFAVHTTRKRMIGVQ 442


>gi|325268609|ref|ZP_08135239.1| DNA (cytosine-5-)-methyltransferase [Prevotella multiformis DSM
           16608]
 gi|324989137|gb|EGC21090.1| DNA (cytosine-5-)-methyltransferase [Prevotella multiformis DSM
           16608]
          Length = 441

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 99/242 (40%), Gaps = 31/242 (12%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
            ++  +  +  D+I  DPPYN+   G       S +    DS +     + +  F ++  
Sbjct: 204 DIVTLMNGRVADMILTDPPYNVNYEGG----GDSKLKIQNDSMEN----DLFLRFLQSVF 255

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNA 148
                ++K  G+ +V  +          ++   F I    +W K + +    GR+ +Q  
Sbjct: 256 NVMFSIVKAGGSFYVFHADSEGENFRRAIREAGFKIAQCCIWVKDSLV---MGRQDYQWQ 312

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
           HE  +          Y +   A    N D +  + W                 ++HPT K
Sbjct: 313 HEPCL----------YGWKPGAAHFWNSDRKQTTIW---------NFDKPKANRIHPTMK 353

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           P AL++  + +STK GDI++D F GSG++    ++  R   G+E+   Y+    +R  S+
Sbjct: 354 PIALMAYPITNSTKNGDIVVDVFSGSGSTIMACQQTDRIGYGMEIDPKYVSATVRRFMSM 413

Query: 269 QP 270
            P
Sbjct: 414 FP 415


>gi|320159539|ref|YP_004172763.1| putative methyltransferase [Anaerolinea thermophila UNI-1]
 gi|319993392|dbj|BAJ62163.1| putative methyltransferase [Anaerolinea thermophila UNI-1]
          Length = 307

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 46/72 (63%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           R+   + +HP   P +L  +++   T  G+++LDPF GSGT+   A+ L R+ +G ++++
Sbjct: 63  RDIRDKSIHPATFPISLSKKVISLFTHEGELVLDPFVGSGTTLVAARDLNRNAVGFDLQE 122

Query: 256 DYIDIATKRIAS 267
            YID+  +R+A+
Sbjct: 123 KYIDLCAERLAT 134


>gi|152981982|ref|YP_001354447.1| DNA modification methylase [Janthinobacterium sp. Marseille]
 gi|151282059|gb|ABR90469.1| DNA modification methylase [Janthinobacterium sp. Marseille]
          Length = 411

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 41/62 (66%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           LHPT KP  L+ R + +S++PG+++LDPF GSGT+   A+K  R    IE+   Y+D+  
Sbjct: 329 LHPTMKPVELVERAIRNSSRPGNVVLDPFGGSGTTLIAAEKSGRVARLIELDPKYVDVIV 388

Query: 263 KR 264
           +R
Sbjct: 389 RR 390


>gi|312623547|ref|YP_004025160.1| DNA methylase N-4/N-6 domain-containing protein
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312204014|gb|ADQ47341.1| DNA methylase N-4/N-6 domain protein [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 323

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 106/259 (40%), Gaps = 27/259 (10%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           FE K KI + + ++V        ++LI   PPYN+ ++               +S D  S
Sbjct: 70  FENKIKIFENDFLTVDLSPWRGKINLIVTSPPYNVGID--------------YNSHDDSS 115

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWV---IGSYHNIFR-----IGTMLQNLNFWILND 128
           S+E Y  F+R WL     +L  +G + +   +    N  R     I T+ + + F   + 
Sbjct: 116 SYEDYLEFSRKWLTKAYDLLADDGRMCLNIPLDKNKNGLRSVYADIVTIAKEVGFKYQST 175

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS--DWLI 186
           I+W + N         + +A    + A        Y   +         ++     +W  
Sbjct: 176 IIWNEQNISRRTAWGSWLSASAPYVIAPVETIVLLYKHQWKRKSKGTSTIEKEQFIEWTN 235

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            + + +   R K G   HP   P  L  R +   +   D +LDPF GSG++   A +  R
Sbjct: 236 GVWTFNGENRKKIG---HPAPFPVELPRRCIKLFSFEEDTVLDPFLGSGSTLIAALEEGR 292

Query: 247 SFIGIEMKQDYIDIATKRI 265
             IG+E+   Y+++A KRI
Sbjct: 293 QGIGVEIDSSYVELAIKRI 311


>gi|83648327|ref|YP_436762.1| DNA modification methylase [Hahella chejuensis KCTC 2396]
 gi|83636370|gb|ABC32337.1| DNA modification methylase [Hahella chejuensis KCTC 2396]
          Length = 405

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 40/62 (64%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           LHPT KP  L+ R + +S++PGD +LDPF GSGT+   A+K  R    IE+   Y+D+  
Sbjct: 318 LHPTMKPVELVERAIRNSSRPGDRVLDPFGGSGTTLIAAEKSGRVARLIELDPKYVDVIV 377

Query: 263 KR 264
           +R
Sbjct: 378 RR 379


>gi|15616097|ref|NP_244402.1| hypothetical protein BH3535 [Bacillus halodurans C-125]
 gi|10176159|dbj|BAB07254.1| BH3535 [Bacillus halodurans C-125]
          Length = 449

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 108/257 (42%), Gaps = 44/257 (17%)

Query: 38  KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK 97
           +  D+IF DPPYN+   G       +  D + DS  +F  F  +DAF     +A  +V K
Sbjct: 194 EKADMIFTDPPYNVDYEGATGMKIKN--DNMEDS--EFYQF-LFDAF-----VAMYQVTK 243

Query: 98  PNGTLWVIG------SYHNIFR-IGTMLQNLNFWILNDIV----------------WRKS 134
             G ++V        ++   F+  G +L+    W+ N +V                W+  
Sbjct: 244 EGGPIYVCHADSEGLTFRKAFQDSGFLLKQCLIWVKNSLVLGRQDYHWRHEPILYGWKPG 303

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD------ALKAAN-EDVQMRSDWLIP 187
                + GR+     E  +  + +PK       ++       +K  + E +   SD  + 
Sbjct: 304 AAHKWYGGRKQSTVIEDPVDLAITPKVDHVLLTFNNGISSTVVKVPSYEIIHDGSDEGMT 363

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                   RN D    HPT KP AL +R + +S+KPG+ +LDPF GSG++    ++  R 
Sbjct: 364 TWRIERPKRNAD----HPTMKPIALCARAIQNSSKPGERVLDPFGGSGSTLIACEQTGRI 419

Query: 248 FIGIEMKQDYIDIATKR 264
              +E    Y ++  +R
Sbjct: 420 CHMMEYDPVYAEVIIRR 436


>gi|82703297|ref|YP_412863.1| site-specific DNA-methyltransferase (adenine-specific)
           [Nitrosospira multiformis ATCC 25196]
 gi|82411362|gb|ABB75471.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nitrosospira multiformis ATCC 25196]
          Length = 673

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 130/330 (39%), Gaps = 82/330 (24%)

Query: 12  NQNSIFEWKDKIIKGNSISVLEKL-------------PAKSVDLIFADPPYNLQLNGQLY 58
           N+N +  W +K+I G+++  ++ L                 + L++ DPP+  +   Q  
Sbjct: 64  NKNGV-TWHNKLIFGDNLQAMKTLLEMKRRGELCNADGTSGIRLVYIDPPFATRQEFQGA 122

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
           +   +  D +  +         +  F R  L+  R +L  NG L+V   Y     I  +L
Sbjct: 123 QDQKAYQDKIYGA--------TFIEFLRKRLILIRDLLSDNGLLYVHLDYRKSHYIKVIL 174

Query: 119 QNL----NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN------- 167
             +    NF  +N++ W           R +   H+ ++  + + K+  + FN       
Sbjct: 175 DEIFGEQNF--MNEVAWCYGER--ELATRHWNRKHDNILVYAKNFKSDQHVFNWKEAAGQ 230

Query: 168 --------YDALKAANEDVQMR------SDWL----IPI--------------CSGSERL 195
                   Y+ +       Q+R      S W     IP+                  E +
Sbjct: 231 YSQGTLAKYEHIDEDGRKFQLRGRNVKGSPWRGKHGIPLDVEAANPEWVYRDYFDTKEGI 290

Query: 196 RNKD-------------GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           R +D                 +P+ K  ALL+RI+  S+  GD+++D F GSGT+ AVA+
Sbjct: 291 RPRDWWSDIPFLNRASSDRYDYPSAKNPALLNRIIKVSSNIGDLVMDAFAGSGTTCAVAE 350

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
           KL R +IGI+  +  I    KR+ ++   G
Sbjct: 351 KLNRRWIGIDCGKLAIYTIQKRMLNLSEKG 380


>gi|325564236|gb|ADZ31427.1| M.PflMI [Pseudomonas fluorescens]
          Length = 363

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 66/146 (45%), Gaps = 24/146 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           + +G+S+S+L+KLP+ S+ LI  DPPY+      ++          T   D     E   
Sbjct: 28  VAEGDSLSLLKKLPSHSISLILTDPPYHATKKQNIF--------GDTAFSDDQHYLEWMS 79

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   W    RRVL+PNG+L+         R+  M     F IL+ IVW K N  P F G
Sbjct: 80  QFADEW----RRVLRPNGSLFCFCDTSMSARLEVMFSE-KFNILSHIVWTKPND-PGFDG 133

Query: 143 ----------RRFQNAHETLIWASPS 158
                     R++    E +I+A P+
Sbjct: 134 WKGKMKKEALRQWYAHSERIIFAEPA 159



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 40/62 (64%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP ++L   + ++T PGDI+LD F GSG++ + A KL R  + +E++  +++    
Sbjct: 268 HPAEKPISMLEHAIEATTFPGDIVLDCFSGSGSTASAALKLGRRTLSMEIEPHWVEYIGA 327

Query: 264 RI 265
           R+
Sbjct: 328 RL 329


>gi|148727180|ref|YP_001285656.1| putative N6-methyltransferase [Aeromonas phage phiO18P]
 gi|110349315|gb|ABG73203.1| putative N6-methyltransferase [Aeromonas phage phiO18P]
          Length = 358

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 37/51 (72%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           HP +KP A++  I+ +S++PGD++ D F GSG +G  A +L R FIG+E++
Sbjct: 283 HPCEKPAAMMEHIVRTSSRPGDVVGDFFMGSGATGKAAWRLGRCFIGVELE 333



 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 23/140 (16%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWD-KFSSFE 79
           K++  +S++ L+ +P+ S+DL+  DPPY        +R        V D  WD ++    
Sbjct: 11  KLVNADSLAYLKTMPSHSLDLVAVDPPY--------FR--------VKDLDWDNQWPDVT 54

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AY  +    ++   R+LKPNG+L++  S      I  +++  +F +L+ IVW K + + N
Sbjct: 55  AYLDWLEMCVIEFARILKPNGSLYLFCSPGLNADIELLVRK-HFKVLSHIVWSKPSGVWN 113

Query: 140 FRG----RRFQNAHETLIWA 155
                  R F  A E +I+A
Sbjct: 114 RADKSTLRNFWPASERIIFA 133


>gi|74316954|ref|YP_314694.1| adenine specific DNA methylase MOD [Thiobacillus denitrificans ATCC
           25259]
 gi|74056449|gb|AAZ96889.1| adenine specific DNA methylase MOD [Thiobacillus denitrificans ATCC
           25259]
          Length = 577

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 40/57 (70%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +G +   T KPE L+SRIL  ST PGD +LD F GSGT+GA A K+ R +I +E+++
Sbjct: 313 EGVQAFETPKPEDLVSRILSISTNPGDWVLDSFAGSGTTGAAAHKMGRRWIMVELEE 369


>gi|270692628|ref|ZP_06222937.1| DNA (cytosine-5-)-methyltransferase [Haemophilus influenzae HK1212]
 gi|270316038|gb|EFA28070.1| DNA (cytosine-5-)-methyltransferase [Haemophilus influenzae HK1212]
          Length = 181

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 48/76 (63%)

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           E+   K+  KLHPTQKP A+L R++   T  GD+++DP  GS ++   A++L R   G E
Sbjct: 106 EKDNRKEIPKLHPTQKPIAVLKRLIEIFTDEGDVVIDPVAGSASTLRAARELNRPSYGFE 165

Query: 253 MKQDYIDIATKRIASV 268
           +K+D   IA +++ ++
Sbjct: 166 IKKDSCKIAKEQMLNI 181


>gi|163868337|ref|YP_001609546.1| methyltransferase [Bartonella tribocorum CIP 105476]
 gi|161017993|emb|CAK01551.1| methyltransferase [Bartonella tribocorum CIP 105476]
          Length = 546

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 37/50 (74%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           T KPE L+ RI+  +T PGD+ILD F GSGT+GAVA K+ R +I IE+ +
Sbjct: 310 TPKPERLMERIIQLATTPGDLILDSFAGSGTTGAVAHKMGRRWIMIELGE 359


>gi|316997329|dbj|BAJ52776.1| adenine-specific DNA methylase [Campylobacter lari]
          Length = 670

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 36/51 (70%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
            + +QKPE +L RI+ SS+    +++D F GSGT+ AV+ KL R +IGIEM
Sbjct: 599 FYSSQKPENMLRRIIQSSSDENSVVMDFFVGSGTTLAVSHKLNRKYIGIEM 649


>gi|316997315|dbj|BAJ52764.1| type II DNA modification enzyme [Campylobacter lari]
          Length = 669

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 36/51 (70%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
            + +QKPE +L RI+ SS+    +++D F GSGT+ AV+ KL R +IGIEM
Sbjct: 599 FYSSQKPENMLRRIIQSSSDENSVVMDFFVGSGTTLAVSHKLNRKYIGIEM 649


>gi|170783324|ref|YP_001711658.1| putative restriction-modification system methyltransferase
           [Clavibacter michiganensis subsp. sepedonicus]
 gi|169157894|emb|CAQ03103.1| putative restriction-modification system methyltransferase
           [Clavibacter michiganensis subsp. sepedonicus]
          Length = 391

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 43/67 (64%)

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           E LR+  G  +  T KPE LL RI+   + PGD +LD + GSGT+  VA++L R++IG+E
Sbjct: 300 ELLRDFPGGPVFDTPKPEKLLERIIKIGSDPGDTVLDYYLGSGTTAVVAQRLGRNWIGVE 359

Query: 253 MKQDYID 259
             +  ++
Sbjct: 360 QNESVVE 366


>gi|116513198|ref|YP_812105.1| adenine specific DNA methylase Mod [Lactococcus lactis subsp.
           cremoris SK11]
 gi|116108852|gb|ABJ73992.1| Adenine specific DNA methylase Mod [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 692

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 191 GSERLRNKDGEKLHPT-QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           G  +  NK+G+ + P  +KPE LL +I+  ++  GDI+LD F GSG++ A A K+ R+FI
Sbjct: 486 GETKNVNKEGQVVFPNGKKPERLLGKIIEMASDEGDIVLDFFGGSGSTAAAAMKMNRTFI 545

Query: 250 GIEMKQDYIDIATKRIASV 268
            +E  ++ + +   R+ +V
Sbjct: 546 SLEQIENQVQLELDRLNNV 564


>gi|302188328|ref|ZP_07265001.1| putative site-specific DNA methyltransferase [Pseudomonas syringae
           pv. syringae 642]
          Length = 432

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 64/164 (39%), Gaps = 34/164 (20%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQ-----------LYRPD------------- 61
           G+ + V+  LPA SVD +  DPPY ++  G+            YR               
Sbjct: 8   GDCLEVMRSLPADSVDSVVTDPPYGIRFMGKSWDGKDIEDRATYRASMPSNDGACGPNGG 67

Query: 62  HSLVDAVTDSWD-KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           H  V A    +D   +  +A+ AFT  W   C RVLKP G L    +      +   ++ 
Sbjct: 68  HRSVAAEAGKYDLTPAGMKAFQAFTLDWATECLRVLKPGGHLLSFAAARTYHHMAVGIEM 127

Query: 121 LNFWILNDIVWRKSNPMP---NFRGRR------FQNAHETLIWA 155
             F I + I+W   +  P   N +G         + AHE +  A
Sbjct: 128 AGFEIRDQIMWVFGSGFPKSHNLKGEHVGWGTALKPAHEPICMA 171



 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 36/66 (54%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPT KP  L++ +L   T  G   LDPF GSG++G  A      FIGIE    Y+ IA  
Sbjct: 345 HPTVKPTDLMAYLLRLVTPTGGKTLDPFMGSGSTGKAAVFEGFDFIGIEQDVAYMAIANA 404

Query: 264 RIASVQ 269
           RIA  +
Sbjct: 405 RIAHAR 410


>gi|11995224|ref|NP_072082.1| PvuIIM [Proteus vulgaris]
 gi|1709165|sp|P11409|MTP2_PROVU RecName: Full=Modification methylase PvuII; Short=M.PvuII; AltName:
           Full=N-4 cytosine-specific methyltransferase PvuII
 gi|1256542|gb|AAA96336.1| PvuIIM [Proteus vulgaris]
          Length = 336

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 117/298 (39%), Gaps = 81/298 (27%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLN---GQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           G+S+ +LE  P +S+ L+   PP+ LQ     G L +  H  VD                
Sbjct: 33  GDSLELLESFPDESISLVMTSPPFALQRKKEYGNLEQ--HEYVD---------------- 74

Query: 83  AFTRAWLLACRRV----LKPNGTLWVI--GSY---------HNIFRIGTMLQNLNFWILN 127
                W L+  +V    LKP+G+  V   G+Y         +N   +  M+  + F++  
Sbjct: 75  -----WFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVPARSIYNFRVLIRMIDEVGFFLAE 129

Query: 128 DIVWRKSNPMP------NFRGRRFQNAHETLIWASPS--PKA---KGYTFNYDALKAANE 176
           D  W   + +P      N R  R ++A  T+ W S +  PK+   K      D +K   E
Sbjct: 130 DFYWFNPSKLPSPIEWVNKRKIRVKDAVNTVWWFSKTEWPKSDITKVLAPYSDRMKKLIE 189

Query: 177 DV-QMRSDWLIPICSGSERLRNKD----------------------------GEKLHPTQ 207
           D  +  +    P      +  +KD                            G K HP +
Sbjct: 190 DPDKFYTPKTRPSGHDIGKSFSKDNGGSIPPNLLQISNSESNGQYLANCKLMGIKAHPAR 249

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
            P  L    +   T+P D+++D F GS T+G VA++  R +I  EMK +Y+  +  R 
Sbjct: 250 FPAKLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRF 307


>gi|77411475|ref|ZP_00787820.1| adenine specific DNA methyltransferase (mod) [Streptococcus
           agalactiae CJB111]
 gi|77162478|gb|EAO73444.1| adenine specific DNA methyltransferase (mod) [Streptococcus
           agalactiae CJB111]
          Length = 481

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 2/72 (2%)

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           +D E    T KPE LL RI+   +  GD++LD F GS T+ AVA K+ R FIGIE + DY
Sbjct: 283 EDTEYDFSTPKPEKLLQRIIHIGSNEGDLVLDFFMGSATTQAVAMKMNRRFIGIE-QMDY 341

Query: 258 ID-IATKRIASV 268
           I+ ++  R+  V
Sbjct: 342 INTVSVPRLQKV 353


>gi|54309137|ref|YP_130157.1| putative haemagglutinin associated protein [Photobacterium
           profundum SS9]
 gi|46913569|emb|CAG20355.1| Putative haemagglutinin associated protein [Photobacterium
           profundum SS9]
          Length = 219

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 101/231 (43%), Gaps = 33/231 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVD-AVTDSWDKFSSFE 79
           ++ K ++++ L  L   SVDLI  DPPY +L+ + ++       V  + ++ W +     
Sbjct: 2   QVFKEDAVTWLSTLADASVDLIVTDPPYESLEKHRKIGTTTRLKVSKSSSNQWFEIFPNN 61

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            ++ F R       RVLK +   ++      +F I  + + + F     I+W K +    
Sbjct: 62  RFEDFLRE----VYRVLKKDAHFYLFCDQETMFFIKPIAEKVGFKFWKPIIWDKVSIG-- 115

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
             G  ++  HE +++     +                     +D  IP     + L  K 
Sbjct: 116 -MGYHYRARHEYILFFEKGKRK-------------------LNDLGIP-----DILEFKR 150

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
             + +PT+KP  L+  ++  S+   ++++DPFFGSG +   AK L R ++G
Sbjct: 151 VYRGYPTEKPVELIQTLISQSSANYELVVDPFFGSGATLIAAKNLDRRYMG 201


>gi|207110618|ref|ZP_03244780.1| DNA methylase [Helicobacter pylori HPKX_438_CA4C1]
          Length = 71

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 41/65 (63%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           PE L+ R L   +   DI+LDPF G+GT+  VAK+L R FIGI++ + Y ++A +R+   
Sbjct: 4   PEELVKRCLKLFSYQNDIVLDPFNGAGTTTKVAKQLGRRFIGIDISEKYCEVAKERLKET 63

Query: 269 QPLGN 273
             L N
Sbjct: 64  TNLFN 68


>gi|330824386|ref|YP_004387689.1| DNA methylase N-4/N-6 domain-containing protein [Alicycliphilus
           denitrificans K601]
 gi|329309758|gb|AEB84173.1| DNA methylase N-4/N-6 domain protein [Alicycliphilus denitrificans
           K601]
          Length = 568

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 46/76 (60%), Gaps = 3/76 (3%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK---QDYIDIAT 262
           T KPEALL RIL  ++K GDI+LD F GSGT+G VA K+ R +I +E+    Q +I    
Sbjct: 311 TPKPEALLQRILHIASKEGDIVLDSFAGSGTTGVVAHKMGRRWIMVELGEHCQTHIIPRI 370

Query: 263 KRIASVQPLGNIELTV 278
           K++   +  G I   V
Sbjct: 371 KKVIDGEDKGGISEAV 386


>gi|300087210|ref|YP_003757732.1| DNA methylase N-4/N-6 domain-containing protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299526943|gb|ADJ25411.1| DNA methylase N-4/N-6 domain protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 326

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 3/90 (3%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           R+   +K HP   P AL  + +   T  G+++LDPF GSGT+   A+ L R+ +G ++KQ
Sbjct: 63  RDIRDKKTHPATFPIALAKKCISLFTHEGELVLDPFVGSGTTLIAARDLNRNSVGFDLKQ 122

Query: 256 DYIDIATKRIASVQPL--GNIELTVLTGKR 283
           +Y+ +   R+  + PL  G  +L +    R
Sbjct: 123 EYVSLCESRLLQI-PLDHGTTQLAICDDAR 151


>gi|196231519|ref|ZP_03130377.1| DNA methylase N-4/N-6 domain protein [Chthoniobacter flavus
           Ellin428]
 gi|196224372|gb|EDY18884.1| DNA methylase N-4/N-6 domain protein [Chthoniobacter flavus
           Ellin428]
          Length = 276

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 114/281 (40%), Gaps = 62/281 (22%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
            G+ +S +  L A SVD++   PPYNL ++   +R D              +S E Y  +
Sbjct: 14  HGDCVSGMADLDADSVDVVVTSPPYNLDIDYATFRDD--------------ASREDYLEW 59

Query: 85  TRAWLLACRRVLKPNGTLW---------------VIGSYHNIFRIGTMLQNLNFWILNDI 129
           +  W     R+LKP+G+ +               ++ +   +FR    LQN   WI +  
Sbjct: 60  SVRWATEVHRLLKPDGSFFLNVGASPANPLLPHQLVLALQPLFR----LQNTIHWIKSVT 115

Query: 130 VWRKSNP---MPNFR---GRRF-QNAHETLIWASPSPK------AKGYTF-------NYD 169
           V  +  P   + +F+    RR+  + HE +   +          A G  +        + 
Sbjct: 116 VQPRRAPELSVGHFKPINSRRYITDCHEYVFHLTHKGDVPIDRLAVGVAYADKSNIARWA 175

Query: 170 ALKAANEDVQMR-SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGDII 227
             +    D + R ++W I      E ++++D ++ HP   P  L      +   + G + 
Sbjct: 176 HTRGVKRDRRCRGNNWFI----SYETIQHRDRQRPHPATFPTKLAEMCFRLHGAREGLVG 231

Query: 228 LDPFFGSG--TSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           LDPF G G   S A    L R FIG E+ + Y+  A  R+ 
Sbjct: 232 LDPFLGIGHAASAAATCGLER-FIGFEIDEGYLTEARSRLG 271


>gi|292898012|ref|YP_003537381.1| DNA methylase [unidentified phage]
 gi|291197860|emb|CBJ44955.1| putative DNA methylase [unidentified phage]
          Length = 194

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 37/53 (69%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           HP +KP  L+  I+ SST+PGD++ D F GSG +   A KL R+ IG+E++++
Sbjct: 132 HPCEKPAELMEHIITSSTRPGDVVADFFMGSGATVKAALKLGRTAIGVELEEE 184


>gi|218890070|ref|YP_002438934.1| DNA methylase N-4/N-6 [Pseudomonas aeruginosa LESB58]
 gi|218770293|emb|CAW26058.1| DNA methylase N-4/N-6 [Pseudomonas aeruginosa LESB58]
          Length = 331

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 83/204 (40%), Gaps = 48/204 (23%)

Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
           +R+   LQ+  +++  DI+W K NPMP     R   AHE +   +   K++ Y ++++A+
Sbjct: 132 WRLAFALQDDGWYLRQDIIWHKPNPMPESVRDRCTKAHEYVFMLT---KSRRYYYDHEAV 188

Query: 172 K---------------------------AANEDVQ---------MRSDWLIPICSGSERL 195
           K                           A   D Q          RS W +P        
Sbjct: 189 KEDAVSEHPSGNGFKRDARESYKNLDGTARGNDEQWTGVGGKRNRRSVWTVPTAGF---- 244

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                +  H    P  L+   +++    G ++LDPF G+GT+  VA +  R  + IE+  
Sbjct: 245 -----KGAHFATFPPDLIRPCVLAGAPRGGLVLDPFGGAGTTALVAMQEGRRSVLIELNP 299

Query: 256 DYIDIATKRIASVQPLGNIELTVL 279
           +Y  IA  R+ +    G  +L +L
Sbjct: 300 EYAAIARNRLDTAWLEGAAQLDLL 323


>gi|312903193|ref|ZP_07762373.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0635]
 gi|310633069|gb|EFQ16352.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0635]
          Length = 422

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 101/236 (42%), Gaps = 20/236 (8%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           L  K  +L+  DPPYN+ +       + S  + + +  D  S  E +D F  A       
Sbjct: 190 LQGKKANLVVTDPPYNVAVKSDNKELNESGREKIMN--DDMSD-EEFDQFLMAVFQNYSN 246

Query: 95  VLKPNGTLWVI--GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL 152
            ++ +  ++V    SY   F     +      + +  +W K+N    +   R+Q  HE +
Sbjct: 247 AMRDDSAIYVFHGSSYQREFE--NSMNAAGIVVRSQCIWVKNNATFGWSQYRWQ--HEPV 302

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMR---SDWLIPICSGSERLRNKDGEKLHPTQKP 209
            +A    +A  +  +        +D+      + W +P        R+      HPTQKP
Sbjct: 303 FYAHKKKQAPSWYGDRKQTTIWQDDLLEDLPATIWKVP--------RDDVATYYHPTQKP 354

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
            +L++  + +S+K  DI+LD F GSG++    ++L R    +E+   + D+  +R 
Sbjct: 355 LSLIAIPVRNSSKRQDIVLDLFGGSGSTLMTCEQLNRICYTLELDPLFCDVIIERF 410


>gi|53713761|ref|YP_099753.1| putative methylase [Bacteroides fragilis YCH46]
 gi|253566235|ref|ZP_04843689.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|52216626|dbj|BAD49219.1| putative methylase [Bacteroides fragilis YCH46]
 gi|251945339|gb|EES85777.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|301164556|emb|CBW24115.1| putative DNA methylase [Bacteroides fragilis 638R]
          Length = 251

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 198 KDGE--KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +DGE  K+HPTQKP  LL R++   T  GD+++DP  GSG++   A +L R   G E+K+
Sbjct: 172 RDGETPKVHPTQKPVPLLRRLIEIFTDKGDVVIDPCAGSGSTLLAAAQLGRKAYGFEIKK 231

Query: 256 DYIDIATKRIAS 267
            +   A K I S
Sbjct: 232 QFFADANKLILS 243


>gi|118575740|ref|YP_875483.1| DNA modification methylase [Cenarchaeum symbiosum A]
 gi|118194261|gb|ABK77179.1| DNA modification methylase [Cenarchaeum symbiosum A]
          Length = 339

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP   P  +++  +   T  G ++LDP+ GSGT+G  A+ L RSF+GIE+   Y   A K
Sbjct: 274 HPAIYPVGIIAEFIRLLTPKGAVVLDPYMGSGTTGVAARSLGRSFMGIELNAGYCRAANK 333

Query: 264 RIASV 268
           RI++ 
Sbjct: 334 RISAA 338



 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 115/288 (39%), Gaps = 59/288 (20%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN-GQLYRPDHSLVDAVTDS 71
           + S+  + + +  G+S  +L+ +P+ SVDL+   PPY  Q + G     +   V+A  DS
Sbjct: 11  RGSLAPFLNTVRCGDSAKMLKDVPSGSVDLVITSPPYYQQRDYGGGRTGNEGHVEAYIDS 70

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT-------MLQNLNFW 124
                 FE            C RV K  G++        +F +G        ML    F 
Sbjct: 71  I--MQVFE-----------QCVRVTKETGSI--------VFNMGDKYSQGSLMLVPYRFA 109

Query: 125 I----------LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
           I          +N+  W K+NP P    RR  +  E     +   K+  Y +N D  +  
Sbjct: 110 IRATGSGAVRLVNNTTWVKTNPTPRQFKRRLVSGTEPFFHFA---KSDSYCYNIDDFQRP 166

Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLS-RILVSSTKPGDI------- 226
              V+ +      +  G ++L   +  +L P QK  A  + +  +  TK G I       
Sbjct: 167 ETGVK-KPPENTRVGEGYKKL--IESSELEPVQKRRAQKALQEAIEETKSGAIAGFRMKI 223

Query: 227 --ILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI--DIATKRIASVQ 269
             I  P FG G +G    +LR   F  I M+ + I  D+   ++ S++
Sbjct: 224 RGIHSPAFG-GQAGGRQIQLRDNGFTIIRMRGNPIKRDVIHHQVESIR 270


>gi|332983335|ref|YP_004464776.1| ParB domain-containing protein nuclease [Mahella australiensis 50-1
           BON]
 gi|332701013|gb|AEE97954.1| ParB domain protein nuclease [Mahella australiensis 50-1 BON]
          Length = 417

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 99/245 (40%), Gaps = 27/245 (11%)

Query: 42  LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
            +F DPP+N+        P       + D+     S E + AF        + V +    
Sbjct: 193 FVFTDPPWNVDYGSDTRHPSWKPRQILNDN----MSTEEFGAFLLRAFKCMKEVSEAGCM 248

Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
            +V+ S      +  +++   +   + I+W+K + +     + +   +E  IW       
Sbjct: 249 TYVVMSAQEWGSLMNVMREAGYHWSSTIIWKKDSLV--LSRKDYHTQYEP-IW------- 298

Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
             Y +         +D +    W IP    SE          HPT KP +L+++ +++S+
Sbjct: 299 --YGWLDGTRLCPLKDRKQSDVWEIPRPKVSEE---------HPTMKPVSLVAKAMLNSS 347

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
             GD+ LD F GSGT+   A++  R    +E+   Y D+  KR  S    G   + ++TG
Sbjct: 348 HIGDLTLDLFGGSGTTMIAAQQTGRVCFMMELDSKYCDVIVKRYVS--QFGADSVFLVTG 405

Query: 282 KRTEP 286
               P
Sbjct: 406 SEKIP 410


>gi|293401144|ref|ZP_06645288.1| DNA (cytosine-5-)-methyltransferase [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305270|gb|EFE46515.1| DNA (cytosine-5-)-methyltransferase [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 415

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 102/242 (42%), Gaps = 38/242 (15%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
           K  S  +L  +  K  +L+  DPPYN+   G   +  +  +D      D F  F  +DAF
Sbjct: 176 KAQSYEML--MAGKKANLVVTDPPYNVNYEGTAGKIQNDNMDN-----DSFYQF-LFDAF 227

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
           T       ++ +  + +++V  +            +  F++    +W+K + +    GR 
Sbjct: 228 TNM-----KQAMAEDASIYVFHADTEGLNFRKAFADAGFYLSGCCIWKKPSLV---LGRS 279

Query: 145 -FQNAHETLIWA-SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
            +Q  HE  ++    S K + Y+   +      E  +  +D                   
Sbjct: 280 PYQWQHEPCLFGWKKSGKHQWYSGRKETTIWEFEKPKKNAD------------------- 320

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPT KP AL++  +++S+    I+LDPF GSG++    ++  R    IE+ + Y D+  
Sbjct: 321 -HPTMKPIALIAYPIMNSSMSNCIVLDPFGGSGSTLIACEQTGRICHTIELDEKYADVIV 379

Query: 263 KR 264
           KR
Sbjct: 380 KR 381


>gi|310766711|gb|ADP11661.1| putative DNA methylase [Erwinia sp. Ejp617]
          Length = 506

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 36/50 (72%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           T KPE L+ R+L  ++K  D+ILD F GSGT+ AVA K+ R +IGIEM +
Sbjct: 300 TPKPERLIERVLHVASKDEDLILDSFLGSGTTAAVAHKMNRRYIGIEMGE 349


>gi|312128656|ref|YP_003993530.1| DNA methylase N-4/N-6 domain-containing protein
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311778675|gb|ADQ08161.1| DNA methylase N-4/N-6 domain protein [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 412

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 142/349 (40%), Gaps = 69/349 (19%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G+S ++ E +  +++DLI   PPY        +  D+ + + +       +  E  
Sbjct: 5   KIIIGDSRNMSE-IDNETIDLIITSPPY-------WHLKDYGVANQIGYGQ---TLHEYL 53

Query: 82  DAFTRAWLLACRRVLKPNGTLW-----------VIGSYHNI---FRIGTMLQNLNFWILN 127
               R W   C RVLK    L            V G Y  I     I    +++ F  + 
Sbjct: 54  KDLYRVW-QECFRVLKEGRRLCINIGDQFARSIVYGRYKIIPLHSEIIAQCEDIGFDYMG 112

Query: 128 DIVWRKSNPMPNFRGRRFQNAHE-------------TLIWASP--SPKAKGYTFNYDALK 172
            I+W+K   M    G     ++               LI+  P  SPK         + +
Sbjct: 113 AIIWQKKTTMNTSGGANVMGSYPYPPNGMIEIDYEFILIFKKPGKSPKV--------SPE 164

Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKL--HPTQKPEALLSRILVSSTKPGDIILDP 230
              + +  + +W     SG    +   GEK   H    P+ L  R++   +  GD +LDP
Sbjct: 165 IKEKSILTKEEWK-EYFSGHWYFK---GEKQTEHEAMFPDELPYRLIKMFSFVGDTVLDP 220

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP---------LGNIELTVLTG 281
           F GSGT+  VA +L R+ IG E+  D++++  K++ ++              IE   +  
Sbjct: 221 FLGSGTTLKVALELERNGIGYEINPDFLEVINKKLNTINNSFLYKIETIKKEIETPEIKA 280

Query: 282 KRTEPRVA-FNLLVERGLIQPGQILTNAQGNISATVCADGT-LISGTEL 328
            + EPR+   + +++  +I+P +   N    +S  V AD   L SG E+
Sbjct: 281 VKYEPRIKDASPIIDPKIIEPKK---NQYFKVSEIVSADTVKLNSGLEV 326


>gi|15828869|ref|NP_326229.1| type III restriction-modification system: methylase [Mycoplasma
           pulmonis UAB CTIP]
 gi|14089812|emb|CAC13571.1| TYPE III RESTRICTION-MODIFICATION SYSTEM: METHYLASE [Mycoplasma
           pulmonis]
          Length = 652

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI-DIATKRI 265
           QKPE L+ RI+   T+  D++LD   GSGT+ AVA K+ R +IGIE + DYI DI  +R+
Sbjct: 459 QKPEKLIERIIKLGTEKNDLVLDFHLGSGTTTAVAHKMGRKYIGIE-QMDYIQDITIERM 517

Query: 266 ASV 268
             V
Sbjct: 518 KKV 520


>gi|292489779|ref|YP_003532669.1| putative DNA adenine methylase [Erwinia amylovora CFBP1430]
 gi|291555216|emb|CBA23461.1| putative DNA adenine methylase [Erwinia amylovora CFBP1430]
          Length = 164

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 37/53 (69%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           HP +KP  L+  I+ SST+PGD++ D F GSG +   A KL R+ IG+E++++
Sbjct: 102 HPCEKPAELMEHIITSSTRPGDVVADFFMGSGATVKAALKLGRTAIGVELEEE 154


>gi|258593779|emb|CBE70120.1| Methyltransferase [NC10 bacterium 'Dutch sediment']
          Length = 298

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 114/281 (40%), Gaps = 61/281 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I G+S   L  LP  SV LI   PPY NL+                 ++ D+    + 
Sbjct: 3   RLINGDSRD-LSFLPDASVHLIVTSPPYWNLK--------------RYNENPDQLGHIQE 47

Query: 81  YDAF----TRAWLLACRRVLKPNGTL-WVIGSY---------HNIF----RIGTMLQNLN 122
           Y+AF     + W     R+L P G L  V+G           H +F     I  + + + 
Sbjct: 48  YEAFLFELEKVWR-HVYRILVPGGRLVCVVGDVCVARRDFGRHLVFPLHADICVVCRRIG 106

Query: 123 FWILNDIVWRK----SNPMPN---FRGRRFQ-------NAHETLIWASPSPKAKGYTFNY 168
           F  LN I+W K    S  + N   F G+ ++       +    L+   P    K      
Sbjct: 107 FDNLNPIIWHKIANASYEVENGSKFLGKPYEPNAIIKNDMEFILMQRKPGGYRKPTNQQR 166

Query: 169 DALKAANEDVQ--MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
           DA +   +D     +  W IP  S           K HP   P  L +R++   +  GD 
Sbjct: 167 DASRIRKDDFGQWFQQIWTIPGAS----------TKQHPAPFPLELATRLIRMFSFTGDT 216

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           +LDPF GSGT+   A +  R+ IG+E+  +Y  +A + + +
Sbjct: 217 VLDPFCGSGTTMIAALRTGRNSIGVEIDPEYCRMAARYLKA 257


>gi|323340597|ref|ZP_08080850.1| methylase [Lactobacillus ruminis ATCC 25644]
 gi|323091970|gb|EFZ34589.1| methylase [Lactobacillus ruminis ATCC 25644]
          Length = 654

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 2/70 (2%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K+  T KPE LL  ++ + +  G+I+LD F GS T+ AVA K+ R FIGIE + DYI+
Sbjct: 459 GKKVFDTPKPEKLLCHLIKAGSNKGNIVLDFFMGSATTQAVAMKMGRRFIGIE-QMDYIE 517

Query: 260 -IATKRIASV 268
            I+  R+  V
Sbjct: 518 TISVPRLQKV 527


>gi|218891243|ref|YP_002440109.1| DNA methylase N-4/N-6 [Pseudomonas aeruginosa LESB58]
 gi|218771468|emb|CAW27235.1| DNA methylase N-4/N-6 [Pseudomonas aeruginosa LESB58]
          Length = 313

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 83/204 (40%), Gaps = 48/204 (23%)

Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
           +R+   LQ+  +++  DI+W K NPMP     R   AHE +   +   K++ Y ++++A+
Sbjct: 114 WRLAFALQDDGWYLRQDIIWHKPNPMPESVRDRCTKAHEYVFMLT---KSRRYYYDHEAV 170

Query: 172 K---------------------------AANEDVQ---------MRSDWLIPICSGSERL 195
           K                           A   D Q          RS W +P        
Sbjct: 171 KEDAVSEHPSGNGFKRDARESYKNLDGTARGNDEQWTGVGGKRNRRSVWTVPTAGF---- 226

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                +  H    P  L+   +++    G ++LDPF G+GT+  VA +  R  + IE+  
Sbjct: 227 -----KGAHFATFPPDLIRPCVLAGAPRGGLVLDPFGGAGTTALVAMQEGRRSVLIELNP 281

Query: 256 DYIDIATKRIASVQPLGNIELTVL 279
           +Y  IA  R+ +    G  +L +L
Sbjct: 282 EYAAIARNRLDTAWLEGAAQLDLL 305


>gi|118588966|ref|ZP_01546373.1| DNA methylase N-4/N-6 [Stappia aggregata IAM 12614]
 gi|118438295|gb|EAV44929.1| DNA methylase N-4/N-6 [Stappia aggregata IAM 12614]
          Length = 252

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 38/62 (61%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPT+KP  L+   + +S +PG+ ++DPF GSGT+     +    F+G+E+   Y + A +
Sbjct: 168 HPTEKPVPLVEAYIRNSARPGEAVIDPFMGSGTAAVACVRTGNPFVGVEIDPKYFETARR 227

Query: 264 RI 265
           R+
Sbjct: 228 RV 229


>gi|295093174|emb|CBK82265.1| DNA modification methylase [Coprococcus sp. ART55/1]
          Length = 270

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 102/256 (39%), Gaps = 40/256 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNL---------QLNGQLY---RPDHSLVDAVT 69
           +I+ G+++ +++       D +  DPPY           +   Q Y   + +++L D   
Sbjct: 27  RILHGDTLKLVKGFQPGIFDAVITDPPYASGGTKQNERNRTTNQKYSSMKAENALPDFDG 86

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
           D+ D+ S    +  +   WL   R+  K    + +   +     I   LQ   +      
Sbjct: 87  DNKDQRS----WTHWMAEWLYDVRKACKRGAPICLFIDWRQYPSITDALQWAGWIWRGTA 142

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
           VW K N  P  +  RF+   E ++W S  P                    M  +  +   
Sbjct: 143 VWDKGNSRP--QKGRFRQQAEYIVWGSNGP--------------------MPINRPVSCL 180

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
            G  R  N    ++H T+KP  L+  + +   +PG +ILDPF G+GT+   A +     +
Sbjct: 181 PGVFRYGNPQ-NRIHVTEKPLQLMKDV-IQICEPGGLILDPFAGAGTTILAATESGYQAV 238

Query: 250 GIEMKQDYIDIATKRI 265
           GIE+   Y  + + R+
Sbjct: 239 GIEVTDAYYKLGSDRV 254


>gi|237755767|ref|ZP_04584371.1| modification methylase, type III R/M system [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692077|gb|EEP61081.1| modification methylase, type III R/M system [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 984

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 41/63 (65%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T+  E LL R++ S++   D+++D F GSGT+ AVA KLRR +IGIEM + +  +   R+
Sbjct: 713 TENSEILLKRVIESTSNENDLVMDFFLGSGTTTAVAHKLRRKWIGIEMGEHFWTVIMPRM 772

Query: 266 ASV 268
             V
Sbjct: 773 KKV 775


>gi|163732390|ref|ZP_02139836.1| DNA methylase N-4/N-6 [Roseobacter litoralis Och 149]
 gi|161394688|gb|EDQ19011.1| DNA methylase N-4/N-6 [Roseobacter litoralis Och 149]
          Length = 442

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 109/229 (47%), Gaps = 20/229 (8%)

Query: 42  LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE-AYDAFTRAWLLACRRV--LKP 98
           +IF DPPYN+ + G +     S + AV       +S E + DAFT     + R +     
Sbjct: 201 MIFVDPPYNVPIAGHV-----SGLGAVKHREFAMASGEMSQDAFTDFLRGSFRNLAAFSA 255

Query: 99  NGTL-WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP-MPNFRGRRFQNAHETLIWAS 156
           +G++ +V   + ++  +    + +   + N  +W K+N  M +F    +++ HE L++A 
Sbjct: 256 DGSVHFVCMDWRHMREVLDAAEGIYPELKNLCIWAKTNAGMGSF----YRSQHE-LVFAF 310

Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
            S  A  +  N+       +  + RS+      + + R    D  K HPT KP  +++  
Sbjct: 311 KSGTAP-HINNF----GLGDKGRHRSNLWTYAGANTFRAGRMDDLKAHPTVKPVDMVADA 365

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           ++  ++ G I+ D F GSGT+   A K  R  +G+E+   Y D+  +R+
Sbjct: 366 ILDCSERGGIVADAFAGSGTTLLAAAKTGRIGVGMEIDPHYADLIVRRL 414


>gi|167039889|ref|YP_001662874.1| DNA methylase N-4/N-6 domain-containing protein [Thermoanaerobacter
           sp. X514]
 gi|300915302|ref|ZP_07132616.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter sp. X561]
 gi|307724787|ref|YP_003904538.1| DNA methylase N-4/N-6 domain-containing protein [Thermoanaerobacter
           sp. X513]
 gi|166854129|gb|ABY92538.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter sp. X514]
 gi|300888578|gb|EFK83726.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter sp. X561]
 gi|307581848|gb|ADN55247.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter sp. X513]
          Length = 412

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 99/231 (42%), Gaps = 34/231 (14%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           +  K  +L+  DPPYN+   G   +  +   +   D++ +F      DAF          
Sbjct: 184 MEGKVANLVVTDPPYNVNYEGTAGKIKND--NMANDAFYQF----LLDAFKN-----IES 232

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNAHETLI 153
           VL  +G+++V  +            +  F++    +W+K + +    GR  +Q  HE ++
Sbjct: 233 VLASDGSIYVFHADTEGLNFRKAFVDAGFYLSGTCIWKKQSLV---LGRSPYQWQHEPVL 289

Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL 213
           +     K KG    Y   K +             I    +  +N D    HPT KP AL+
Sbjct: 290 FGW---KKKGKHLWYSDRKQST------------IWEFDKPKKNAD----HPTMKPIALI 330

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           +  +++S+    I+LDPF GSG++    ++  R    IE+ + Y D+  KR
Sbjct: 331 AYPIMNSSLTNSIVLDPFGGSGSTLIACEQTDRICYTIELDEKYCDVIVKR 381


>gi|188995976|ref|YP_001930227.1| DNA methylase N-4/N-6 domain protein [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931043|gb|ACD65673.1| DNA methylase N-4/N-6 domain protein [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 412

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 107/268 (39%), Gaps = 58/268 (21%)

Query: 32  LEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
           +E++  +S+ LI   PPY    +  +  Q+     +L D + D +             R 
Sbjct: 15  MEEVEDESISLIITSPPYWHIKDYGVENQI-GYGQTLHDYLKDLY-------------RV 60

Query: 88  WLLACRRVLKPNGTLWV-----------IGSYHNI---FRIGTMLQNLNFWILNDIVWRK 133
           WL  C RVLKP   L +            G Y  I     I +  + + F  +  I+W+K
Sbjct: 61  WL-ECFRVLKPGRRLCINVGDQFARSVIYGRYKVIPIHSEIISQCEKIGFDYMGSIIWQK 119

Query: 134 SNPMPNFRGRRFQNAHE-------------TLIWASPSPKAKGYTFNYDALKAANEDVQM 180
              M    G     ++               LI+  P  K K         K   E  ++
Sbjct: 120 KTTMNTTGGAVVMGSYPYPPNGLIEIDYEYILIFKKPGGKEK-------IAKDIKEKSKL 172

Query: 181 RSDWLIPICSGSERLRNKDGEKL--HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
             +      SG  +     GEK   H    PE L  R++   +  G+ +LDPF GSGT+ 
Sbjct: 173 TKEEWKEYFSGHWKF---GGEKQINHEAMFPEELPKRLIKMFSFVGETVLDPFVGSGTTL 229

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIA 266
            VA  L+R+ IG E+ + ++DI  ++I+
Sbjct: 230 KVANLLQRNAIGYEINEKFLDIIKQKIS 257


>gi|332653909|ref|ZP_08419653.1| DNA methylase N-4/N-6 [Ruminococcaceae bacterium D16]
 gi|332516995|gb|EGJ46600.1| DNA methylase N-4/N-6 [Ruminococcaceae bacterium D16]
          Length = 575

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 77/175 (44%), Gaps = 16/175 (9%)

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK----------AANEDVQM 180
           W        F+GR F   H+ ++     P     +   +A++           ++E   M
Sbjct: 398 WHYKKLQQAFKGRAFSLPHDQVMKLRNKPSEAYQSMKAEAMELRAFFDNTHNDSDEHDIM 457

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
              W  PI + +ER    D    H T KP AL  R ++SS++PG++++D F GSG++   
Sbjct: 458 TDVWRFPITNTAER----DDAGGHATPKPIALCERAILSSSRPGELVVDFFGGSGSTLIA 513

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            +   R+   IE++  + D+  +R   ++  G+  +  +   R  PR     + E
Sbjct: 514 CENTGRTCAMIELEPKWCDVIVRRY--IKTTGDNNVRCVRQGRELPREEIATIFE 566


>gi|1072644|pir||S53866 cytosine methylase - phage HP1
 gi|695570|emb|CAA56446.1| cytosine methylase [Halobacterium phage phiH]
          Length = 472

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 108/267 (40%), Gaps = 70/267 (26%)

Query: 6   SLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPD 61
           ++ +  ++ +I EW + I +G++  VL +LP  SV ++   PPY    +  ++GQ+    
Sbjct: 16  AVVVMASETTISEWVNDIHEGDAEEVLAELPESSVHMVMTSPPYFGLRDYGVDGQI---- 71

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV------IGSY------- 108
                 + DS D++      D    A  L  RRVL+P+G+ W+       GS+       
Sbjct: 72  -----GLEDSLDEYID----DLLDVAEQL--RRVLRPDGSWWLNLGDSFAGSWGAQSKDE 120

Query: 109 --HNIF-------------------------RIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +NI                          R+   LQ+  + + +D VW K NPMP+  
Sbjct: 121 TSNNILQHGFPEKNPARNGGLRRKSKMLVPHRVAIALQDAGWIVRSDAVWSKPNPMPHPV 180

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM-RSDWLIPICSGSERLRNKDG 200
             R     E +    P P    Y F+ DA++  ++   + RS         S+R      
Sbjct: 181 KDRLHEHKEFVFHLVPEPD---YWFDLDAVRQPHKSNSIERSQREDNRHEHSQRQTAASE 237

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDII 227
           E L+P Q        +  +   PGDI+
Sbjct: 238 ETLNPDQ-------FVHPNGKNPGDIL 257



 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 34/49 (69%), Gaps = 1/49 (2%)

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
              T+PG I+LDPF G+GT+   AK+L R F+G+++  +Y+ +A KR+ 
Sbjct: 398 TDETEPG-IVLDPFAGAGTTCLSAKELGRRFLGVDLNPEYVAMAQKRVG 445


>gi|293611395|ref|ZP_06693691.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826267|gb|EFF84636.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 511

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 38/56 (67%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           G +   T KPE L+++IL  +T   D++LD F GSGT+ AVA K+ R +IGIEM +
Sbjct: 295 GSEAFSTPKPERLITQILKIATNSNDMVLDSFLGSGTTAAVAHKMSRRYIGIEMGE 350


>gi|152982010|ref|YP_001354391.1| phage related DNA methyltransferase [Janthinobacterium sp.
           Marseille]
 gi|151282087|gb|ABR90497.1| phage related DNA methyltransferase [Janthinobacterium sp.
           Marseille]
          Length = 423

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 94/233 (40%), Gaps = 33/233 (14%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS--WDKFSSFEAYDAFTRAWLLAC 92
           L  + VD++F DPPYN+               A+ +    D F  F    A T   +  C
Sbjct: 190 LQGEQVDMVFTDPPYNVNYANTAKDKMRGTNRAILNDNLGDGFYDF-LLAALTPT-IANC 247

Query: 93  RRVLKPNGTLWVIGSYHNIFR-IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
           R  +    +   +    + FR  G        W  N     +S+         +Q  +E 
Sbjct: 248 RGGIYVAMSSSELDVLQSAFREAGGKWSTFVIWAKNTFTLGRSD---------YQRQYEP 298

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           +++  P    + +  + D       DV     W         +++      LHPT KP  
Sbjct: 299 ILYGWPEGATRHWCGDRD-----QSDV-----W---------QIKKPHKNDLHPTMKPVE 339

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           L+ R + +S+ PG+++LDPF GSGT+   A+K  R    IE+   Y+D+  +R
Sbjct: 340 LVERAIRNSSHPGNVVLDPFGGSGTTLIAAEKSGRLARLIELDPKYVDVIVRR 392


>gi|116486909|emb|CAH64696.1| DNA methylase [Wolbachia endosymbiont of Drosophila teissieri]
 gi|326485621|gb|ADZ76079.1| DNA methyltransferase [Wolbachia endosymbiont of Drosophila
           santomea]
          Length = 404

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 40/62 (64%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           LHPT KP  L+ + +V+S++ GDI+LDPF GSG++    ++  R    IE+   ++D+  
Sbjct: 317 LHPTMKPVELMEKAIVNSSRSGDIVLDPFSGSGSTLIACERTGRICRTIELDSKFVDVTI 376

Query: 263 KR 264
           KR
Sbjct: 377 KR 378


>gi|325690435|gb|EGD32438.1| prophage LambdaSa04 protein [Streptococcus sanguinis SK115]
          Length = 419

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 113/265 (42%), Gaps = 45/265 (16%)

Query: 20  KDKIIKGNSISVLEK----LPAKSVDLIFADPPYNLQLN---GQLYRPDHSLVDAVTDSW 72
           K ++I G+S   LE     L  K  +L+  DPPYN+ +    G++   D S  D      
Sbjct: 172 KHRVICGDSTK-LETYQLLLGDKKANLVVTDPPYNVNVEETAGKIKNDDMSDAD------ 224

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
                   +  F     +   + ++ + +++V  +           ++  F++    VW+
Sbjct: 225 --------FYQFLFNMFVNVEQSMEDDASIYVFHADTEGLNFRRAFKDAGFYLSGCCVWK 276

Query: 133 KSNPMPNFRGRR-FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
           K+  +    GR  +Q  HE +++     K K   F+         D +  + W       
Sbjct: 277 KNALV---LGRSPYQWQHEPVLYGWKQ-KGKHQWFS---------DRKQTTIW------- 316

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
            E  R K   K HPT KP  L++  + +S+  G ++LDPF GSG++   A +  R   GI
Sbjct: 317 -EYDRPK-SSKEHPTMKPVQLMAYPIQNSSMRGTLVLDPFLGSGSTLIAADQTGRICYGI 374

Query: 252 EMKQDYIDIATKRIASVQPLGNIEL 276
           E+ + ++D+  KR        +++L
Sbjct: 375 ELDEKFVDVIVKRYMEATEKTDVKL 399


>gi|300689933|ref|YP_003750928.1| dna modification methylase protein [Ralstonia solanacearum PSI07]
 gi|299076993|emb|CBJ49606.1| putative dna modification methylase protein [Ralstonia solanacearum
           PSI07]
          Length = 406

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 40/62 (64%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           LHPT KP  L+ R + +S++PGD++LD F GSGT+   A+K  R+   IE+   Y D+  
Sbjct: 329 LHPTMKPVELVERAIRNSSRPGDVVLDAFGGSGTTLIAAEKAARTARLIELDPRYADVIV 388

Query: 263 KR 264
           +R
Sbjct: 389 RR 390


>gi|317164414|gb|ADV07955.1| putative type III restriction/modification system modification
           methylase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 237

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 2/68 (2%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-I 260
           +L   +KPE+L+  I+  +T   DI+LD   GSGT+ AVA K+ R +IGIE + DYI+ +
Sbjct: 33  ELKNGKKPESLIETIIKLATNENDIVLDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIETL 91

Query: 261 ATKRIASV 268
           A +R+  V
Sbjct: 92  AVERMKKV 99


>gi|218961397|ref|YP_001741172.1| Modification methylase, type III R/M system [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730054|emb|CAO80966.1| Modification methylase, type III R/M system [Candidatus Cloacamonas
           acidaminovorans]
          Length = 998

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 42/64 (65%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PT+  E LL R++ S++   +I++D F GSGT+ AVA+KL R +IGIEM + +  +   R
Sbjct: 726 PTENSEILLKRVIESTSDERNIVMDFFLGSGTTTAVAQKLGRKWIGIEMGEHFWSVVMPR 785

Query: 265 IASV 268
           +  V
Sbjct: 786 MKKV 789


>gi|328552988|gb|AEB23480.1| Modification methylase BamHII [Bacillus amyloliquefaciens TA208]
          Length = 279

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 39/64 (60%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP   PE L    ++S +  GDI+ DPF GSGT+  +A    R +IG E+ ++Y DIA +
Sbjct: 196 HPAIFPEKLAEDHILSWSNEGDIVFDPFMGSGTTAKMAALNNRKYIGTEISKEYCDIANE 255

Query: 264 RIAS 267
           R+ +
Sbjct: 256 RLKN 259


>gi|293392005|ref|ZP_06636339.1| putative type III DNA modification methylase [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952539|gb|EFE02658.1| putative type III DNA modification methylase [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 573

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 36/50 (72%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           T KPE  + RIL  +T PGD++LD F GSGT+GAVA K+ R +I +E+ +
Sbjct: 318 TPKPERFIERILTIATNPGDLVLDSFAGSGTTGAVAHKMGRRWIMVELGE 367


>gi|157155781|ref|YP_001464330.1| DNA methylase [Escherichia coli E24377A]
 gi|218696572|ref|YP_002404239.1| DNA methylase N-4/N-6 [Escherichia coli 55989]
 gi|256025062|ref|ZP_05438927.1| DNA methylase N-4/N-6 [Escherichia sp. 4_1_40B]
 gi|157077811|gb|ABV17519.1| DNA methylase [Escherichia coli E24377A]
 gi|218353304|emb|CAU99280.1| DNA methylase N-4/N-6 [Escherichia coli 55989]
          Length = 542

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 57/97 (58%), Gaps = 9/97 (9%)

Query: 191 GSERLRNKDGEKLHPT------QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           GS R    + +K+ PT       KPEAL+ +IL  +T  GD++LD F GSGT+GAVA+K+
Sbjct: 290 GSNRTSKAEIKKVIPTISAFDTPKPEALIKKILEIATDNGDLVLDSFAGSGTTGAVAQKM 349

Query: 245 RRSFIGIEMK---QDYIDIATKRIASVQPLGNIELTV 278
            R +I +E+    + +I    K++   + LG I  +V
Sbjct: 350 GRQWIMVELGDHCRTHIVPRMKKVIDGKDLGGITKSV 386


>gi|55822847|ref|YP_141288.1| type III restriction-modification system methylation subunit
           [Streptococcus thermophilus CNRZ1066]
 gi|55738832|gb|AAV62473.1| type III restriction-modification system methylation subunit
           [Streptococcus thermophilus CNRZ1066]
          Length = 646

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           DG+    T KPE L+ RIL   +   D++LD F GS T+ AVA K+ R FIGIE + DYI
Sbjct: 450 DGQTAFGTPKPEKLIQRILTLGSDENDLVLDFFMGSATTQAVAMKMNRRFIGIE-QMDYI 508

Query: 259 D-IATKRIASV 268
             ++  R+  V
Sbjct: 509 STVSVPRLQKV 519


>gi|217078044|ref|YP_002335762.1| modification methylase, type III R/M system [Thermosipho africanus
           TCF52B]
 gi|217037899|gb|ACJ76421.1| modification methylase, type III R/M system [Thermosipho africanus
           TCF52B]
          Length = 879

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 16/148 (10%)

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM-RSDWLIPIC 189
           W       NF+ +   N  +   +    P+   Y      +K  ++ +   + DW +   
Sbjct: 596 WDDEETKENFKNKILINKKDVFKYLDIKPETNVY-----GVKKVDKCLNCGQDDWKVEYL 650

Query: 190 SGSERLRNKDGEKLHP---------TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           +  E ++  D  K  P         T+  E LL RI+ S++  G++I+D F GSGT+ AV
Sbjct: 651 TSDE-VKVTDNWKDIPSYSDYFKFSTENSEILLKRIIESTSNDGNLIIDFFLGSGTTTAV 709

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASV 268
           A KLRR +IGIE+   +  +   R+  V
Sbjct: 710 AHKLRRKWIGIELGDHFWSVVLPRMKKV 737


>gi|281418288|ref|ZP_06249308.1| ParB domain protein nuclease [Clostridium thermocellum JW20]
 gi|281409690|gb|EFB39948.1| ParB domain protein nuclease [Clostridium thermocellum JW20]
          Length = 417

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 99/245 (40%), Gaps = 27/245 (11%)

Query: 42  LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
            +F DPP+N+        P       + D+     S E + AF        + V +    
Sbjct: 193 FVFTDPPWNVDYGSDTRHPSWKPRQILNDN----MSTEEFGAFLLRAFKCMKEVSEAGCM 248

Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
            +V+ S      +  +++   +   + I+W+K + +     + +   +E  IW       
Sbjct: 249 TYVVMSAQEWGSLMNVMREAGYHWSSTIIWKKDSLV--LSRKDYHTQYEP-IW------- 298

Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
             Y +         +D +    W +P    SE          HPT KP +L+++ +++S+
Sbjct: 299 --YGWLEGTRLCPLKDRKQSDVWEMPRPKVSEE---------HPTMKPVSLVAKAMLNSS 347

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
             GD+ LD F GSGT+   A++  R    +E+   Y D+  KR  S    G   + ++TG
Sbjct: 348 HTGDLALDLFGGSGTTMIAAQQTGRVCFMMELDSKYCDVIVKRYVS--QFGADSVFLVTG 405

Query: 282 KRTEP 286
               P
Sbjct: 406 SEKIP 410


>gi|160933418|ref|ZP_02080806.1| hypothetical protein CLOLEP_02264 [Clostridium leptum DSM 753]
 gi|156867295|gb|EDO60667.1| hypothetical protein CLOLEP_02264 [Clostridium leptum DSM 753]
          Length = 279

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 99/257 (38%), Gaps = 44/257 (17%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY---------NLQLNGQLYR---PDHSLVDAVTD 70
           I+ G+++ ++     +  D +  DPPY           +   Q Y    P ++  D   D
Sbjct: 41  ILHGDTLQIIRAFKTQVFDALITDPPYASGGWKPAEKNRTTTQKYSSMDPKNAPPDFDGD 100

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
           + D+ S    +  +   WL   R+  KP   + +   +     I   LQ   +     +V
Sbjct: 101 NRDQRS----WTRWMAEWLYDARKACKPGAPVCLFIDWRQYPSITDALQWAGWIWRGCVV 156

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWAS--PSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
           W K    P  +GR F+   E ++W S  P P ++         + AN             
Sbjct: 157 WDKMTSRPQ-KGR-FRQQSEYVVWGSNGPMPVSRPVGCLPGVFRYANPQ----------- 203

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
                        + H T+KP  L+ R LV    PG  ILDPF G+GT+   A+      
Sbjct: 204 ------------NRTHVTEKPLQLM-RDLVKICVPGGRILDPFCGAGTTVLAARLEGYEA 250

Query: 249 IGIEMKQDYIDIATKRI 265
           +GIE+   Y  + + R+
Sbjct: 251 VGIEVTDAYYKLGSDRV 267


>gi|227548305|ref|ZP_03978354.1| DNA restriction-modification system, DNA methylase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227079623|gb|EEI17586.1| DNA restriction-modification system, DNA methylase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 627

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 41/62 (66%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K   T KPE LL RI+  +T PGDI+LD F GSGT+ AVA+K+ R ++  E+ +D  +  
Sbjct: 355 KAFDTPKPERLLERIIHIATNPGDIVLDVFAGSGTTAAVAQKMGRRWVTCELVEDTFNRF 414

Query: 262 TK 263
           T+
Sbjct: 415 TR 416


>gi|15611696|ref|NP_223347.1| putative type II DNA modification enzyme (methyltransferase)
           [Helicobacter pylori J99]
 gi|4155180|gb|AAD06206.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
           [Helicobacter pylori J99]
          Length = 404

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 103/257 (40%), Gaps = 48/257 (18%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K  ++ G++   L K+   SV+LIF  PPY    N ++Y                + +++
Sbjct: 143 KPSLLVGDNAQTLNKIAPSSVNLIFTSPPY---YNARIY--------------SDYKNYK 185

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIG----------------SYHNIFRIGTMLQNLNF 123
            Y +     L AC RVL+  G   +I                  Y   F    +L +  F
Sbjct: 186 DYLSAMSQSLKACFRVLE-EGRFIIINVSPIITKRAGREFESVRYPIHFDFHQILIDNGF 244

Query: 124 WILNDIVWRKSN-PMPNFRGRRFQN-----------AHETLIWASPSP--KAKGYTFNYD 169
           + +++I+W K +  +PN  G   QN           +   L++   +P    K       
Sbjct: 245 YFVDEILWIKPDFSVPNRIGGYLQNKKPLGYKPNCVSESLLVYRKKAPFLLDKNIKIAEK 304

Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
            LK   ++  +     +PI + +         K HP   PE+L  R+L   +   +++ D
Sbjct: 305 RLKPIKQNHTLFGKKELPIETTNCWYITPKSSKDHPAVFPESLCERVLNYYSFENEVVCD 364

Query: 230 PFFGSGTSGAVAKKLRR 246
           PF GSGT G VAK + R
Sbjct: 365 PFAGSGTFGMVAKSMGR 381


>gi|55820925|ref|YP_139367.1| type III restriction-modification system methylation subunit
           [Streptococcus thermophilus LMG 18311]
 gi|55736910|gb|AAV60552.1| type III restriction-modification system methylation subunit
           [Streptococcus thermophilus LMG 18311]
          Length = 641

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           DG+    T KPE L+ RIL   +   D++LD F GS T+ AVA K+ R FIGIE + DYI
Sbjct: 445 DGQTAFGTPKPEKLIQRILTLGSDENDLVLDFFMGSATTQAVAMKMNRRFIGIE-QMDYI 503

Query: 259 D-IATKRIASV 268
             ++  R+  V
Sbjct: 504 STVSVPRLQKV 514


>gi|116486911|emb|CAH64697.1| DNA methylase [Wolbachia endosymbiont of Drosophila yakuba]
          Length = 404

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 40/62 (64%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           LHPT KP  L+ + +V+S++ GDI+LDPF GSG++    ++  R    IE+   ++D+  
Sbjct: 317 LHPTMKPVELMGKAIVNSSRSGDIVLDPFSGSGSTLIACERTGRICRTIELDSKFVDVTI 376

Query: 263 KR 264
           KR
Sbjct: 377 KR 378


>gi|114798140|ref|YP_761238.1| DNA methylase [Hyphomonas neptunium ATCC 15444]
 gi|114738314|gb|ABI76439.1| DNA methylase [Hyphomonas neptunium ATCC 15444]
          Length = 450

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 100/228 (43%), Gaps = 23/228 (10%)

Query: 42  LIFADPPYNLQLNGQLYRPDHS--LVDAVTDSWDKFSSFEAYDAFTRA--WLLACRRVLK 97
           + F DPPYN+++ G +   DH    + +   S ++F +F  Y A   A  W +       
Sbjct: 209 VCFTDPPYNVKIKGHVSSKDHDEFAMGSSEMSPEQFVAF-LYGALGGAVEWSI------- 260

Query: 98  PNGTLWVIGSYHNIFR-IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
            +G +  I   H   R +      L    LN  VW K+N      G  +++ HE +    
Sbjct: 261 -DGAIHYICMDHRHMRELYAAADPLYSAQLNLCVWAKTN---GGMGSFYRSRHELV---- 312

Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
            +    G   + + ++         + W     +   + R+KD    HPT KP  +++  
Sbjct: 313 -AVYKVGTAPHINNVQLGRFGRNRTNVWSYAGANTFRKGRDKDIAD-HPTVKPVTMVADA 370

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           ++ ++ PGDI +D F GSGT    A++  R    IE++  Y D+A +R
Sbjct: 371 IMDASAPGDICIDGFGGSGTLILAAERTNRVARVIELEPKYCDVAVRR 418


>gi|38233404|ref|NP_939171.1| putative DNA methylase [Corynebacterium diphtheriae NCTC 13129]
 gi|38199664|emb|CAE49323.1| Putative DNA methylase [Corynebacterium diphtheriae]
          Length = 667

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 6/84 (7%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT--- 262
           T KPE LL R++  +T PGDI+LD F GSGT+ AVA K+ R ++  E+ +D  +  T   
Sbjct: 399 TPKPERLLERVIHIATNPGDIVLDCFAGSGTTAAVAHKMGRRWVTCELLEDTFNRFTVPR 458

Query: 263 -KRIASVQPLGNIELTVLTGKRTE 285
             ++ S + +G I  T   G+R +
Sbjct: 459 LTKVVSGEDMGGI--TTTKGERVD 480


>gi|153870157|ref|ZP_01999614.1| type II DNA modification enzyme [Beggiatoa sp. PS]
 gi|152073377|gb|EDN70386.1| type II DNA modification enzyme [Beggiatoa sp. PS]
          Length = 526

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 42/62 (67%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +PTQKP+ALL RI+ +S+  GDIILD F G GT+   A+ L R +IGI++    + +  +
Sbjct: 289 YPTQKPKALLERIIQASSNEGDIILDAFCGCGTTVDAAESLNRQWIGIDIAPFALSLIKR 348

Query: 264 RI 265
           R+
Sbjct: 349 RL 350


>gi|220920904|ref|YP_002496205.1| DNA methylase N-4/N-6 domain-containing protein [Methylobacterium
           nodulans ORS 2060]
 gi|219945510|gb|ACL55902.1| DNA methylase N-4/N-6 domain protein [Methylobacterium nodulans ORS
           2060]
          Length = 464

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 100/230 (43%), Gaps = 20/230 (8%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL---LACRRVL 96
            DL+F DPPYN+ + G +     S + A        +S E  +A   A+L   L   R  
Sbjct: 210 ADLVFTDPPYNVPIEGHV-----SGLGATKHRDFAMASGEMNEAEFTAFLARFLDLARAH 264

Query: 97  KPNGTL-WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP-MPNFRGRRFQNAHETLIW 154
             +G++ +V     +   + T ++ +   +    VW KSN  M +   ++ +  H     
Sbjct: 265 SRDGSIHYVCMDAAHALELLTAVRQVGLSLKTTCVWAKSNGGMGSLYRQQCEFVHVLKNG 324

Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
            +P      +  N +  +       +   W     +   R R ++   LHPT KP AL++
Sbjct: 325 EAP------HVNNVELGRHGRNRTTL---WQYAGVNSFRRGRMEE-LSLHPTVKPVALVA 374

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
             +   +K   ++LDPF GSGT+   A+K  R    +E+   Y D+A +R
Sbjct: 375 DAIKDCSKRRGVVLDPFSGSGTTLVAAEKTGRVARVLELSPAYCDVAIRR 424


>gi|290558936|gb|EFD92322.1| DNA methylase N-4/N-6 domain protein [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 403

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 43/62 (69%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +PTQKPEALL RI+ +S+  GD++ D F G GT+ AVA++L R +I  ++ +  +++   
Sbjct: 93  YPTQKPEALLERIIKASSNTGDVVADFFCGGGTTPAVAQRLGRRWIASDISRIAVEVTKG 152

Query: 264 RI 265
           RI
Sbjct: 153 RI 154


>gi|115375277|ref|ZP_01462542.1| DNA methylase [Stigmatella aurantiaca DW4/3-1]
 gi|310820222|ref|YP_003952580.1| modification methylase [Stigmatella aurantiaca DW4/3-1]
 gi|115367744|gb|EAU66714.1| DNA methylase [Stigmatella aurantiaca DW4/3-1]
 gi|309393294|gb|ADO70753.1| Modification methylase [Stigmatella aurantiaca DW4/3-1]
          Length = 254

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 27/245 (11%)

Query: 32  LEKLPAKSVDLIFADPPYNL----QLNGQLYRPD-HSLVDAVTDSWDKFSSFEAYDAFTR 86
           L  L      L+  DPPY L    +  G    P  H  +D   +   +F + + Y  FT 
Sbjct: 24  LSALGDSRAHLLLTDPPYCLLTRRRKGGDERDPRAHKKID--RNPIVRFETVKDYRVFTE 81

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF-WILNDIVWRKSNPMPNFRGRRF 145
           AW+      L P   L +  +      I T+ + L +  +L + VW K     N   +  
Sbjct: 82  AWMTRAVSWLTPEARLVIWTNLLGKEPITTVARQLGYTHLLGEYVWGKRTTDKNANEQLL 141

Query: 146 QNAHETLIWA-SP-SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
           +     L+++ +P  P   G      A+    +D      W      G+           
Sbjct: 142 RVYEVALVFSRTPLPPLGPGEAPTVWAVVGGYDDDAEAQQW------GN----------- 184

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP  KP ++L  ++ + ++PG+ ILDPF GSG++ A A +L R    +E++ ++ +  T 
Sbjct: 185 HPHHKPFSVLEPLVRTYSRPGETILDPFAGSGSTPAAALRLERRPACMEIEPEWAERVTH 244

Query: 264 RIASV 268
           R+  V
Sbjct: 245 RLRGV 249


>gi|227543560|ref|ZP_03973609.1| ParB family nuclease domain and DNA-modification methylase domain
           protein [Lactobacillus reuteri CF48-3A]
 gi|300909411|ref|ZP_07126872.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus reuteri SD2112]
 gi|227186400|gb|EEI66471.1| ParB family nuclease domain and DNA-modification methylase domain
           protein [Lactobacillus reuteri CF48-3A]
 gi|300893276|gb|EFK86635.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus reuteri SD2112]
          Length = 409

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 110/255 (43%), Gaps = 57/255 (22%)

Query: 33  EKLPAKS-VDLIFADPPYNLQLNGQL--YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
           +KL  K+ V+L+  DPPYN+    +    + DH        + DKF  F   DAF     
Sbjct: 179 QKLLGKTQVNLVLTDPPYNVDYQSKAGKIKNDHQ-------ASDKFYQF-LLDAFQNM-- 228

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNA 148
               + +  + +++V  +           Q+  F++    +W+K + +    GR  +Q  
Sbjct: 229 ---NQAMADDASIYVFHADTEGLNFRRAFQDAGFYLSGCCIWKKQSLV---LGRSPYQWQ 282

Query: 149 HETLIWA-SPSPKAKGYT-------FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           HE +++    + K + YT       + +D  K + E                        
Sbjct: 283 HEPVLYGWKKTGKHEWYTGRKESTIWEFDKPKKSKE------------------------ 318

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
              HPT KP  LL+  +++ST     +LDPF GSG++    ++ +R+   +E+ + Y D+
Sbjct: 319 ---HPTMKPIPLLAYPIMNSTMTNCTVLDPFGGSGSTLIACEQTKRTCFMMELDEKYCDV 375

Query: 261 ATKRIASVQPLGNIE 275
             KR   ++ +G+++
Sbjct: 376 IIKRY--IEQVGSVQ 388


>gi|226355112|ref|YP_002784852.1| DNA methylase [Deinococcus deserti VCD115]
 gi|226317102|gb|ACO45098.1| putative DNA methylase [Deinococcus deserti VCD115]
          Length = 337

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 5/95 (5%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           H  + P  L +R++   T PGD +LD F GSGT+   A  L R+FIG+E+  +Y+ ++ +
Sbjct: 242 HEAKFPLELPTRVIKLLTNPGDTVLDCFMGSGTTAVAATNLNRNFIGLELLPEYVALSRR 301

Query: 264 RIASVQPLGNIELTV-----LTGKRTEPRVAFNLL 293
            +A+    G+  L       L+ +RTE   A  L 
Sbjct: 302 NVAAAVQRGHGLLRQDKDLRLSSERTEEAAAVGLF 336


>gi|76810413|ref|YP_335021.1| adenine specific DNA methylase Mod [Burkholderia pseudomallei
           1710b]
 gi|254258911|ref|ZP_04949965.1| adenine specific DNA methylase Mod [Burkholderia pseudomallei
           1710a]
 gi|76579866|gb|ABA49341.1| Adenine specific DNA methylase Mod [Burkholderia pseudomallei
           1710b]
 gi|254217600|gb|EET06984.1| adenine specific DNA methylase Mod [Burkholderia pseudomallei
           1710a]
          Length = 567

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 37/50 (74%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           T KPE LL R++  +T PGD++LD F GSGT+GAVA K+ R +I +E+ +
Sbjct: 311 TPKPEKLLKRVIDLATNPGDLVLDSFAGSGTTGAVAHKMGRRWIMVELGE 360


>gi|218134951|ref|ZP_03463755.1| hypothetical protein BACPEC_02856 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990336|gb|EEC56347.1| hypothetical protein BACPEC_02856 [Bacteroides pectinophilus ATCC
           43243]
          Length = 289

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 39/57 (68%), Gaps = 1/57 (1%)

Query: 198 KDGEKLHPT-QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           K+G+   P  +KPE LL +I+  +T  GD++LD F GSGT+ A A KL R +IGIEM
Sbjct: 77  KEGDVTFPNGKKPEKLLKQIIEMTTLEGDMVLDSFLGSGTTAATAHKLNRRWIGIEM 133


>gi|300215358|gb|ADJ79771.1| Type III restriction-modification system methylation subunit
           [Lactobacillus salivarius CECT 5713]
          Length = 424

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+ L  T KPE LL RIL   +   D++LD F GS T+ AVA K+ R FIGIE + +YI
Sbjct: 232 EGQALFGTPKPEKLLQRILTLGSNKNDLVLDFFMGSATTQAVAMKMGRRFIGIE-QMEYI 290

Query: 259 D-IATKRIASV 268
           + ++  R+  V
Sbjct: 291 NTVSVPRLQKV 301


>gi|304316273|ref|YP_003851418.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777775|gb|ADL68334.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 417

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/268 (22%), Positives = 112/268 (41%), Gaps = 30/268 (11%)

Query: 22  KIIKGNS--ISVLEKL-PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +++ G+S  +S ++KL   +    +F DPP+N+        P       + D+     S 
Sbjct: 170 RLMCGDSTLLSDVQKLMDGQKARFVFTDPPWNVDYGSDTRHPSWKPRQILNDN----MST 225

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           E + AF        + V +     +V+ S      +  +++   +   + I+W+K + + 
Sbjct: 226 EEFGAFLLRAFKCMKEVSEAGCMTYVVMSAQEWGSLMNVMREAGYHWSSTIIWKKDSLV- 284

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
               + +   +E  IW         Y +         +D +    W +P    SE     
Sbjct: 285 -LSRKDYHTQYEP-IW---------YGWLEGTRLCPLKDRKQSDVWEMPRPKVSEE---- 329

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPT KP +L+++ +++S+  GD+ LD F GSGT+   A++  R    +E+   Y 
Sbjct: 330 -----HPTMKPVSLVAKAMLNSSHIGDLTLDLFGGSGTTMIAAQQTGRVCFMMELDSKYC 384

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEP 286
           D+  KR  S    G   + +L+G    P
Sbjct: 385 DVIVKRYVS--QFGADSVFLLSGSEKIP 410


>gi|91202366|emb|CAJ75426.1| partial CDS, similar to adenine specific DNA methylase [Candidatus
           Kuenenia stuttgartiensis]
          Length = 488

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 40/70 (57%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G K   T KPE L+ RI   +T P D +LD F GSGT+ AVA K+ R +IGIE+ +   
Sbjct: 297 EGRKSFDTPKPEKLIQRIFEIATNPSDWVLDSFLGSGTTAAVAHKMWRRWIGIELGEHCH 356

Query: 259 DIATKRIASV 268
                R+  V
Sbjct: 357 THCLPRLKKV 366


>gi|86139841|ref|ZP_01058407.1| DNA methylase N-4/N-6 [Roseobacter sp. MED193]
 gi|85823470|gb|EAQ43679.1| DNA methylase N-4/N-6 [Roseobacter sp. MED193]
          Length = 420

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 22/160 (13%)

Query: 108 YHNIFRIGTMLQNL---NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
           +H      T+  +L    F I + I+W K   + +     +Q  HE   W +   K KG+
Sbjct: 252 WHGALHAATVADSLTAAGFAIRSQIIWAKDRLVLSRGDYHWQ--HEP-CWYAVRAKGKGH 308

Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
                       D +  + W I         +++D E +H TQKP   + R +++++ PG
Sbjct: 309 WAG---------DRKQTTLWQIAN-------KDQDAETVHGTQKPVDCMRRPILNNSNPG 352

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
             + +PF GSGT+   A+   R   G+E+   Y+D+A +R
Sbjct: 353 QAVYEPFMGSGTTLIAAETTGRICYGVELNPAYVDVAIER 392


>gi|303245319|ref|ZP_07331603.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio fructosovorans
           JJ]
 gi|302493168|gb|EFL53030.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio fructosovorans
           JJ]
          Length = 445

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 40/61 (65%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPT KP ALL R + +S++PGD+++DPF GSG++    + L RS   +E+   + D+  +
Sbjct: 361 HPTMKPVALLERFIRNSSRPGDLVIDPFGGSGSTFMACEGLGRSCRTLELDPRFCDVIVR 420

Query: 264 R 264
           R
Sbjct: 421 R 421


>gi|268601532|ref|ZP_06135699.1| type III restriction/modification system modification methylase
           [Neisseria gonorrhoeae PID18]
 gi|268585663|gb|EEZ50339.1| type III restriction/modification system modification methylase
           [Neisseria gonorrhoeae PID18]
          Length = 253

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 2/68 (2%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-I 260
           +L   +KPE+L+  I+  +T   DI+LD   GSGT+ AVA K+ R +IGIE + DYI+ +
Sbjct: 49  ELKNGKKPESLIETIIKLATNENDIVLDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIETL 107

Query: 261 ATKRIASV 268
           A +R+  V
Sbjct: 108 AVERMKKV 115


>gi|317498249|ref|ZP_07956548.1| DNA methylase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894458|gb|EFV16641.1| DNA methylase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 438

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 120/263 (45%), Gaps = 34/263 (12%)

Query: 20  KDKIIKGNSISVLEK---LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G+S S L+    +  +  DL+  DPPYN+         D S+ +   D+ D+ S
Sbjct: 172 RHRLMCGDSASELDVSQLMAGEEADLVITDPPYNVNYK------DGSIKN---DNMDEGS 222

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
               ++ F +   LA    ++P    ++  +           ++  F +   ++W K++ 
Sbjct: 223 ----FEVFLQNAFLAMFEFMRPGAAAYIFHADSEGLAFRRAFRDAGFKLAECLIWEKNSF 278

Query: 137 MPNFRGRR-FQNAHETLIWASPSPKAKGYTFNYDALKAANEDV----QMRSDWLIP---- 187
           +    GR+ +Q  HE +++      A  +  +        ED      M+   LI     
Sbjct: 279 V---LGRQDYQWRHEPILYGWKEGAAHYFIDDRSQDTVLLEDELDLESMKKQDLITYIHQ 335

Query: 188 -ICSGSER----LRNKDGE-KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
            I S  ++      NK  +  +HPT KP AL+ +++ +S+KP   +LD F GSG++   A
Sbjct: 336 IIDSQKDKTTVIFENKPTKNDVHPTMKPVALIGKLMKNSSKPEWNVLDLFGGSGSTLMAA 395

Query: 242 KKLRRSFIGIEMKQDYIDIATKR 264
           ++L R+   +E+ + + D+  +R
Sbjct: 396 EQLNRTAFLMELDEKFCDVIVRR 418


>gi|209524713|ref|ZP_03273260.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
 gi|209494857|gb|EDZ95165.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
          Length = 439

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +PT+K   LL RI+ +S+ PGD+ILD F GSGTS A+A +++R++IG++   +       
Sbjct: 302 YPTEKNPDLLRRIIAASSNPGDLILDGFAGSGTSLAIADEMQRNWIGVDHSIEAFKTILN 361

Query: 264 RIA-SVQPLGNI 274
           R    ++P+G+ 
Sbjct: 362 RFEHGIKPMGDF 373


>gi|127421|sp|P18051|MTB2_BACAM RecName: Full=Modification methylase BamHII; Short=M.BamHII;
           AltName: Full=N(4)-cytosine-specific methyltransferase
           BamHII
 gi|39314|emb|CAA37205.1| unnamed protein product [Bacillus amyloliquefaciens]
          Length = 265

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 39/64 (60%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP   PE L    ++S +  GDI+ DPF GSGT+  +A    R +IG E+ ++Y DIA +
Sbjct: 182 HPAIFPEKLAEDHILSWSNEGDIVFDPFMGSGTTAKMAALNNRKYIGTEISKEYCDIANE 241

Query: 264 RIAS 267
           R+ +
Sbjct: 242 RLKN 245


>gi|125974144|ref|YP_001038054.1| ParB-like nuclease [Clostridium thermocellum ATCC 27405]
 gi|125714369|gb|ABN52861.1| ParB-like nuclease [Clostridium thermocellum ATCC 27405]
          Length = 417

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 99/245 (40%), Gaps = 27/245 (11%)

Query: 42  LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
            +F DPP+N+        P       + D+     S E + AF        + V +    
Sbjct: 193 FVFTDPPWNVDYGSDTRHPSWKPRQILNDN----MSTEEFGAFLLRAFKCMKEVSEAGCM 248

Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
            +++ S      +  +++   +   + I+W+K + +     + +   +E  IW       
Sbjct: 249 TYIVMSAQEWGSLMNVMREAGYHWSSTIIWKKDSLV--LSRKDYHTQYEP-IW------- 298

Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
             Y +         +D +    W IP    SE          HPT KP +L+++ +++S+
Sbjct: 299 --YGWLEGTRLCPLKDRKQSDVWEIPRPKVSEE---------HPTMKPVSLVAKAMLNSS 347

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
             GD+ LD F GSGT+   A++  R    +E+   Y D+  KR  S    G   + ++TG
Sbjct: 348 HIGDLTLDLFGGSGTTMIAAQQTGRVCFMMELDPKYCDVIVKRYVS--QFGADSVFLVTG 405

Query: 282 KRTEP 286
               P
Sbjct: 406 SEKIP 410


>gi|291521502|emb|CBK79795.1| DNA modification methylase [Coprococcus catus GD/7]
          Length = 270

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 102/256 (39%), Gaps = 40/256 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNL---------QLNGQLY---RPDHSLVDAVT 69
           +I+ G+++ +++       D +  DPPY           +   Q Y   + +++L D   
Sbjct: 27  RILHGDTLKLVKGFQPGIFDAVITDPPYASGGTKQNERNRTTNQKYSSMKAENALPDFDG 86

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
           D+ D+ S    +  +   WL   R+  K    + +   +     I   LQ   +      
Sbjct: 87  DNKDQRS----WTHWMAEWLYDVRKACKRGAPICLFIDWRQYPSITDALQWAGWIWRGTA 142

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
           VW K N  P  +  RF+   E ++W S  P                    M  +  +   
Sbjct: 143 VWDKGNSRP--QKGRFRQQAEYIVWGSNGP--------------------MPINRPVSCL 180

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
            G  R  N    ++H T+KP  L+  + +   +PG +ILDPF G+GT+   A +     +
Sbjct: 181 PGVFRYGNPQ-NRIHVTEKPLQLMKDV-IQICEPGGLILDPFAGAGTTILAAAESGFQAV 238

Query: 250 GIEMKQDYIDIATKRI 265
           GIE+   Y  + + R+
Sbjct: 239 GIEVTDAYYKLGSDRV 254


>gi|194098835|ref|YP_002001898.1| Twin-argninine leader-binding protein DmsD [Neisseria gonorrhoeae
           NCCP11945]
 gi|193934125|gb|ACF29949.1| Twin-argninine leader-binding protein DmsD [Neisseria gonorrhoeae
           NCCP11945]
          Length = 457

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 2/68 (2%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-I 260
           +L   +KPE+L+  I+  +T   DI+LD   GSGT+ AVA K+ R +IGIE + DYI+ +
Sbjct: 253 ELKNGKKPESLIETIIKLATNENDIVLDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIETL 311

Query: 261 ATKRIASV 268
           A +R+  V
Sbjct: 312 AVERMKKV 319


>gi|220930207|ref|YP_002507116.1| DNA methylase N-4/N-6 domain protein [Clostridium cellulolyticum
           H10]
 gi|220000535|gb|ACL77136.1| DNA methylase N-4/N-6 domain protein [Clostridium cellulolyticum
           H10]
          Length = 413

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 106/250 (42%), Gaps = 38/250 (15%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
           K ++  VL  +  K+ +L+  DPPYN+   G   +  +          D  ++ EA+  F
Sbjct: 176 KKDTFDVL--MDGKAANLVVTDPPYNVNYEGTAGKIKN----------DNMAN-EAFYDF 222

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
             A        +  + +++V  +            +  F++    +W+K + +    GR 
Sbjct: 223 LLAAFQNTEEAMAKDASIYVFHADTEGLNFRRAFSDAGFYLSGTCIWKKQSLV---LGRS 279

Query: 145 -FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
            +Q  HE +++     K KG    Y   K               I    +  +N D    
Sbjct: 280 PYQWQHEPVLFGW---KKKGKHLWYSDRKQTT------------IWEFEKPKKNSD---- 320

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPT KP AL++  +++S+    I+LDPF GSG++    ++  R    IE+ + Y D+  K
Sbjct: 321 HPTMKPVALVAYPIMNSSLSNCIVLDPFGGSGSTLIACEQTDRICYTIELDEKYCDVIVK 380

Query: 264 RIASVQPLGN 273
           R   ++ +GN
Sbjct: 381 RY--IEQVGN 388


>gi|57238157|ref|YP_179407.1| site-specific DNA-methyltransferase [Campylobacter jejuni RM1221]
 gi|88596378|ref|ZP_01099615.1| site-specific DNA-methyltransferase [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|57166961|gb|AAW35740.1| site-specific DNA-methyltransferase [Campylobacter jejuni RM1221]
 gi|88191219|gb|EAQ95191.1| site-specific DNA-methyltransferase [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|315058718|gb|ADT73047.1| Adenine-specific methyltransferase [Campylobacter jejuni subsp.
           jejuni S3]
 gi|315927088|gb|EFV06439.1| DNA methylase family protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 251

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 38/62 (61%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+HPTQKP  LL R++   T  GD+++DP  GSG++   A  L R   G E+K+D+   A
Sbjct: 178 KVHPTQKPVKLLERLITIFTDAGDVVIDPCAGSGSTLLAATNLNRKAYGFEIKKDFFKSA 237

Query: 262 TK 263
            +
Sbjct: 238 NE 239


>gi|210617274|ref|ZP_03291500.1| hypothetical protein CLONEX_03722 [Clostridium nexile DSM 1787]
 gi|210149378|gb|EEA80387.1| hypothetical protein CLONEX_03722 [Clostridium nexile DSM 1787]
          Length = 270

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 96/252 (38%), Gaps = 32/252 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR--------PDHSLVDAVTDSWD 73
           +I+ G+++ +++       D +  DPPY      Q  R           S  +A+ D   
Sbjct: 30  RILHGDTLKLVKAFQPGIFDAVITDPPYASGGTKQNERNRTTNQKYSSMSAANALPDFDG 89

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                 ++  +   WL   R+  K    + +   +     I   LQ   +      VW K
Sbjct: 90  DNKDQRSWTHWMAEWLYDVRKACKKGAPICLFIDWRQYPSITDALQWAGWIWRGTAVWDK 149

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
            N  P  +GR F+   E ++W S  P                    M  +  +    G  
Sbjct: 150 GNSRPQ-KGR-FRQQAEYIVWGSNGP--------------------MPINRPVSCLPGVF 187

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           R  N    ++H T+KP  L+  + +   +PG +ILDPF G+GT+   A       +GIE+
Sbjct: 188 RYGNPQ-NRIHVTEKPLQLMKDV-IQICEPGGLILDPFAGAGTTVLAAVTTGYRAVGIEV 245

Query: 254 KQDYIDIATKRI 265
              Y  + + R+
Sbjct: 246 TDAYYKLGSDRV 257


>gi|29376019|ref|NP_815173.1| adenine methyltransferase, putative [Enterococcus faecalis V583]
 gi|29343481|gb|AAO81243.1| adenine methyltransferase, putative [Enterococcus faecalis V583]
          Length = 422

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 106/246 (43%), Gaps = 21/246 (8%)

Query: 26  GNSISVLEKL-PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
              +S +EKL   K  +L+  DPPYN+ +       + S  + + +  D  S  E +D F
Sbjct: 180 ATKLSDVEKLLQGKKANLVVTDPPYNVAVKSDNKELNESGREKIMN--DDMSD-EEFDQF 236

Query: 85  TRAWLLACRRVLKPNGTLWVI--GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
             +        ++ +  ++V    SY   F     +      + +  +W K+N    +  
Sbjct: 237 LMSVFQNYSNAMRDDSAIYVFHGSSYQREFE--NSMNAAGIVVRSQCIWVKNNATFGWSQ 294

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR---SDWLIPICSGSERLRNKD 199
            R+Q  HE + +A    +A  +  +        +D+      + W +P        R+  
Sbjct: 295 YRWQ--HEPVFYAHKKKQAPSWYGDRKQTTIWQDDLLEDLPATIWKVP--------RDDV 344

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
               HPTQKP +L++  + +S+K  DI+LD F GSG++    ++L R    +E+   + D
Sbjct: 345 ATYYHPTQKPLSLIAIPVRNSSKRQDIVLDLFGGSGSTLMTCEQLNRICYTLELDPLFCD 404

Query: 260 IATKRI 265
           +  +R 
Sbjct: 405 VIIERF 410


>gi|260583020|ref|ZP_05850802.1| DNA methylase [Haemophilus influenzae NT127]
 gi|260093871|gb|EEW77777.1| DNA methylase [Haemophilus influenzae NT127]
          Length = 310

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 111/295 (37%), Gaps = 50/295 (16%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ--LYRPDHSLVDAVTDSWDKFSSF 78
           D I   +SI  ++KL + S+  I +D PY +  +    L+   +S +   + +  K S F
Sbjct: 3   DCIYNSDSIFEIKKLDSNSIHAIISDIPYGIDYDDWDILHSNTNSALGGTSSAQHKTSLF 62

Query: 79  ------------------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
                             + Y  +  +W     RVLK   + +V        R+    +N
Sbjct: 63  KRRGKPLNGWSEADKKRPQEYQEWVESWSNEWFRVLKSGSSAFVFAGRQFAHRVVVAFEN 122

Query: 121 LNFWILNDIVWRK----------------------SNPMPNFRGRRFQNAHETLIWASPS 158
             F   + + W K                      +N    +R    +   E ++W    
Sbjct: 123 SGFTFKDMLSWEKDKAPHRAQRISCVFERRGDIANTNKWVGWRVANLRPLFEPILWFQ-K 181

Query: 159 PKAKGYTFNYDALK----AANEDVQMRSDWLIPICSGSERLR---NKDGEKLHPTQKPEA 211
           P   G T   + +K    A NE+     +      + S  L+     + +  H  QKP  
Sbjct: 182 PYKTGSTLADNLIKHEVGAWNENSLTHWNIQQGALNHSNILKVRITSEDKGYHVAQKPLN 241

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           L+  ++   TK   I+LDPF GSGT+   AK+L R FIG E      +IA  R+ 
Sbjct: 242 LMKLLIDLVTKEEQIVLDPFAGSGTTLLAAKELNRHFIGYEKNNGIYNIAVNRLG 296


>gi|172037500|ref|YP_001804001.1| DNA methylase N-4/N-6 [Cyanothece sp. ATCC 51142]
 gi|171698954|gb|ACB51935.1| DNA methylase N-4/N-6 [Cyanothece sp. ATCC 51142]
          Length = 371

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 44/70 (62%)

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           ++G K HP + P+AL    +   T+ GDI+LDPF GS  +G VA+ L R +I IE++++Y
Sbjct: 271 QEGIKRHPARFPQALPEFFINLCTEVGDIVLDPFAGSNMTGKVAETLDRKWIAIEIEEEY 330

Query: 258 IDIATKRIAS 267
           +  +  R  S
Sbjct: 331 VKGSKLRFES 340



 Score = 43.1 bits (100), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 44/162 (27%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
            NS+ +++++P +S+DLI   PP+ L     + + D+  V+A           E ++ F 
Sbjct: 29  ANSLKLMKEIPNESIDLICTSPPFAL-----VRKKDYGNVEAE-------QYIEWFEPFA 76

Query: 86  RAWLLACRRVLKPNGTL-------WVIGS-----YHNIFRIGTML---QN---LNFWILN 127
           + +     R+LKP G+L       WV G      YH  F +   L   QN   L F++  
Sbjct: 77  KEFY----RILKPQGSLAIDIGGSWVKGYPIRSLYH--FELVVHLCRPQNKGGLGFYLAQ 130

Query: 128 DIVWRKSNPMP------NFRGRRFQNAHETLIW--ASPSPKA 161
           +I W     +P        R  R ++A  T+ W    P PKA
Sbjct: 131 EIYWYNPAKLPTPAEWVTVRRERVKDAVNTIWWLCKEPHPKA 172


>gi|226947209|ref|YP_002802282.1| adenine specific DNA methylase N-4/N-6 [Azotobacter vinelandii DJ]
 gi|226722136|gb|ACO81307.1| adenine specific DNA methylase N-4/N-6 [Azotobacter vinelandii DJ]
          Length = 560

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 39/56 (69%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           G+    T KPE L+ R+L  +T PGD++LD F GSGT+GAVA K+ R +I +E+ +
Sbjct: 301 GDSSFDTPKPERLIERVLNIATSPGDLVLDSFAGSGTTGAVAHKMGRRWIMVELGE 356


>gi|315575495|gb|EFU87686.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0309B]
 gi|315580064|gb|EFU92255.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0309A]
          Length = 422

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 106/246 (43%), Gaps = 21/246 (8%)

Query: 26  GNSISVLEKL-PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
              +S +EKL   K  +L+  DPPYN+ +       + S  + + +  D  S  E +D F
Sbjct: 180 ATKLSDVEKLLQGKKANLVVTDPPYNVAVKSDNKELNESGREKIMN--DDMSD-EEFDQF 236

Query: 85  TRAWLLACRRVLKPNGTLWVI--GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
             +        ++ +  ++V    SY   F     +      + +  +W K+N    +  
Sbjct: 237 LMSVFQNYSNAMRDDSAIYVFHGSSYQREFE--NSMNAAGIVVRSQCIWVKNNATFGWSQ 294

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR---SDWLIPICSGSERLRNKD 199
            R+Q  HE + +A    +A  +  +        +D+      + W +P        R+  
Sbjct: 295 YRWQ--HEPVFYAHKKKQAPSWYGDRKQTTIWQDDLLEDLPATIWKVP--------RDDV 344

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
               HPTQKP +L++  + +S+K  DI+LD F GSG++    ++L R    +E+   + D
Sbjct: 345 ATYYHPTQKPLSLIAIPVRNSSKRQDIVLDLFGGSGSTLMTCEQLNRICYTLELDPLFCD 404

Query: 260 IATKRI 265
           +  +R 
Sbjct: 405 VIIERF 410


>gi|300775660|ref|ZP_07085521.1| DNA (cytosine-5-)-methyltransferase [Chryseobacterium gleum ATCC
           35910]
 gi|300505687|gb|EFK36824.1| DNA (cytosine-5-)-methyltransferase [Chryseobacterium gleum ATCC
           35910]
          Length = 297

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 24/132 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+   +++ ++++LP +S+D+I  DPPY    N +L RP                 F+ +
Sbjct: 5   KLFNEDNLELMKRLPDESIDVICIDPPYLYLKNQKLERP-----------------FDEH 47

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F+      CRR+L  NG + + G   + +R  T+L  L F    +I+W KS    +  
Sbjct: 48  KFFS-----ECRRLLTKNGFIVMFGRGESFYRWNTILSELKFSFKEEIIWNKSYTTSSMH 102

Query: 142 GRRFQNAHETLI 153
                  HET++
Sbjct: 103 A--ISRCHETVV 112



 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 6/81 (7%)

Query: 196 RNKDGEKLHPTQKPEALLSRIL---VSSTKP-GDIILDPFFGSGTSGAVA-KKLRRSFIG 250
           RN  G  +HPT+KP  LL R+L   +  +KP  +II+  FFG   S   A   +    I 
Sbjct: 212 RNHYG-TIHPTEKPVRLLERLLALVIPESKPREEIIVADFFGGSMSCMEAVHNMGMKGIA 270

Query: 251 IEMKQDYIDIATKRIASVQPL 271
            E+ Q+Y +   +RI  +QPL
Sbjct: 271 CEIDQEYFEKGKERIEKLQPL 291


>gi|68536318|ref|YP_251023.1| putative DNA restriction-modification system, DNA methylase
           [Corynebacterium jeikeium K411]
 gi|260579016|ref|ZP_05846918.1| DNA restriction-modification system, DNA methylase [Corynebacterium
           jeikeium ATCC 43734]
 gi|68263917|emb|CAI37405.1| putative DNA restriction-modification system, DNA methylase
           [Corynebacterium jeikeium K411]
 gi|258602881|gb|EEW16156.1| DNA restriction-modification system, DNA methylase [Corynebacterium
           jeikeium ATCC 43734]
          Length = 671

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 40/58 (68%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           T KPE LL RI+  +T PGDI+LD F GSGT+ AVA+K+ R ++  E+ +D  +  T+
Sbjct: 403 TPKPERLLERIIHIATNPGDIVLDVFAGSGTTAAVAQKMGRRWVTCELVEDTFNRFTR 460


>gi|291528646|emb|CBK94232.1| DNA modification methylase [Eubacterium rectale M104/1]
          Length = 307

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 108/250 (43%), Gaps = 35/250 (14%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
           G  +S++E     S+D IF D P+ +++ N    R                 +F  YD F
Sbjct: 71  GRDLSIIED---NSIDCIFTDHPWLDIKSNKGGTR-----------------AFAVYDCF 110

Query: 85  --TRAWLLACRRVLKPNGTLWVI------GSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             T        RVLK    L  +       +Y  +++I    +   F   + + W+K   
Sbjct: 111 KYTLDDFKEKARVLKDGCFLVEVLPAENENNYEYLYQIKQYAKEAGFIYYSKVAWKKGTF 170

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR-SDWLIPICSGSERL 195
           + N  GR+ +N  + +I++    KA+    +    +   +   M     ++P     + +
Sbjct: 171 VSN-TGRKAKNTQDIMIFSKG--KARNMRIDTKRTEQTGKLTYMSGCKGMLPTMFDVQPV 227

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
             K+  ++H ++ P +L  +IL   T  G+++LD F GSG  G  A  L+R+ I IE+ +
Sbjct: 228 SKKN--RIHQSELPVSLCEQILEFLTYEGEVVLDSFAGSGAVGEAALNLKRNCILIEILK 285

Query: 256 DYIDIATKRI 265
           D I+   KR 
Sbjct: 286 DNIEKIKKRF 295


>gi|160935258|ref|ZP_02082641.1| hypothetical protein CLOBOL_00154 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441989|gb|EDP19686.1| hypothetical protein CLOBOL_00154 [Clostridium bolteae ATCC
           BAA-613]
          Length = 236

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 94/259 (36%), Gaps = 48/259 (18%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS---WDKFSSFEAYD 82
           G+ + +L  +  KS+D+IF D PY    NG          D V D    W+ +S      
Sbjct: 6   GDCLDILPGIQDKSIDMIFTDLPYGTTRNGW---------DCVIDLKRLWEHYS------ 50

Query: 83  AFTRAWLLACRRVLKPNGT--LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                      R++K NG   LW    +  +     +      WI+      K     N 
Sbjct: 51  -----------RIIKNNGCIALWAQSPFDKVLACSNLKMYRYEWIIEKT---KGTGHLNA 96

Query: 141 RGRRFQNAHETLIWASPSPKAK-GYTFNYDALKAANEDVQMRSDW---LIPICSGSERLR 196
                +     LI+    P      T  +  + +  + V   S++      I  G    R
Sbjct: 97  AKMPMKCHENVLIFYKHLPTYNPQITTGHSPVHSYTKHVSDGSNYGKTRTGISGGGSTER 156

Query: 197 ----------NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                     +   E+LHPTQKP       + + T  GD +LD   GS T+G   ++L R
Sbjct: 157 YPRDVLRFKWDTQRERLHPTQKPLEACKYFIRTYTNSGDTVLDSCMGSNTTGVACQELGR 216

Query: 247 SFIGIEMKQDYIDIATKRI 265
            +IGIE       IA  R+
Sbjct: 217 KYIGIEKDTVNYRIALDRV 235


>gi|50914490|ref|YP_060462.1| adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS10394]
 gi|40218562|gb|AAR83216.1| hypothetical protein [Streptococcus pyogenes]
 gi|50261607|gb|AAT72375.1| methylase [Streptococcus pyogenes]
 gi|50903564|gb|AAT87279.1| Chromosome partitioning protein [Streptococcus pyogenes MGAS10394]
          Length = 410

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 113/249 (45%), Gaps = 37/249 (14%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K ++I G+S    + +  +  K  +L+  DPPYN+ +     +  +   D ++DS     
Sbjct: 166 KHQVICGDSTLPETYITLMGDKKANLVLTDPPYNVNVEETAGKIKN---DNMSDS----- 217

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
               +  F  A  +   + ++ + +++V  +    +      ++  F++    +W+K++ 
Sbjct: 218 ---DFYKFLFAMFVNVEQNMESDASIYVFHADTEGYNFRKAFKDAGFYLSGCCIWKKNSL 274

Query: 137 MPNFRGRR-FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           +    GR  +Q  HE  ++   + K K   F+         D +  + W        E  
Sbjct: 275 V---LGRSPYQWQHEPCLFGWKN-KGKHQWFS---------DRKQTTIW--------EYD 313

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           R K   K HPT KP  L++  + +S+  G ++LDPF GSG++    ++  R   GIE+ +
Sbjct: 314 RPK-LSKEHPTMKPIQLMAYPIQNSSMRGTVVLDPFLGSGSTLIACEETGRICYGIELDE 372

Query: 256 DYIDIATKR 264
            ++D+  KR
Sbjct: 373 KFVDVIVKR 381


>gi|240016412|ref|ZP_04722952.1| putative type III restriction/modification system modification
           methylase [Neisseria gonorrhoeae FA6140]
 gi|240113100|ref|ZP_04727590.1| putative type III restriction/modification system modification
           methylase [Neisseria gonorrhoeae MS11]
          Length = 486

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 2/68 (2%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-I 260
           +L   +KPE+L+  I+  +T   DI+LD   GSGT+ AVA K+ R +IGIE + DYI+ +
Sbjct: 282 ELKNGKKPESLIETIIKLATNENDIVLDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIETL 340

Query: 261 ATKRIASV 268
           A +R+  V
Sbjct: 341 AVERMKKV 348


>gi|56476791|ref|YP_158380.1| adenine specific DNA methylase MOD [Aromatoleum aromaticum EbN1]
 gi|56312834|emb|CAI07479.1| Adenine specific DNA methylase MOD [Aromatoleum aromaticum EbN1]
          Length = 601

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 41/64 (64%)

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           S  L N+ G      +KPEAL+ R L  ST  GDI+LD F GSGT+G+VA K+ R +I +
Sbjct: 330 SNNLHNEGGVSFPNGKKPEALIKRCLELSTTIGDIVLDSFAGSGTTGSVAHKMGRRWIMV 389

Query: 252 EMKQ 255
           E+ +
Sbjct: 390 ELGE 393


>gi|284050607|ref|ZP_06380817.1| DNA methylase N-4/N-6 domain protein [Arthrospira platensis str.
           Paraca]
          Length = 438

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +PT+K   LL RI+ +S+ PGD+ILD F GSGTS A+A +++R++IG++   +       
Sbjct: 302 YPTEKNPDLLRRIIAASSNPGDLILDCFAGSGTSLAIADEMQRNWIGVDHSIEAFKTILN 361

Query: 264 RIA-SVQPLGNI 274
           R    ++P+G+ 
Sbjct: 362 RFEHGIKPMGDF 373


>gi|332346700|gb|AEE60031.1| putative DNA methylase protein [Escherichia coli UMNK88]
          Length = 217

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 42/70 (60%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G + HPT+KP   L  ++ +   P  I+LDPF GSG++   A +  R +IGIE+ + Y  
Sbjct: 130 GNRHHPTEKPVTSLQPLIETFIHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHR 189

Query: 260 IATKRIASVQ 269
              +R+A+VQ
Sbjct: 190 AGQQRLAAVQ 199


>gi|109948189|ref|YP_665417.1| type III restriction-modification system: methyltransferase
           [Helicobacter acinonychis str. Sheeba]
 gi|109715410|emb|CAK00418.1| type III restriction-modification system: methyltransferase
           [Helicobacter acinonychis str. Sheeba]
          Length = 642

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 41/57 (71%), Gaps = 1/57 (1%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +KP+ L+  IL  ST+  D++LD F GSGT+ AVA K++R +IGIE + DYI+  TK
Sbjct: 458 KKPKRLIKDILEISTQENDLVLDFFAGSGTTCAVAHKMKRRYIGIE-QMDYIENITK 513


>gi|262383519|ref|ZP_06076655.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides sp.
           2_1_33B]
 gi|262294417|gb|EEY82349.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides sp.
           2_1_33B]
          Length = 583

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 45/68 (66%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           E++  T KPE L+ +I+  ++  G+ +LD + GSGT+ A A KL+R++IGIE+     ++
Sbjct: 287 EQVFDTPKPEELIKQIIEIASNEGEYVLDCYIGSGTTIATAHKLKRNYIGIEIGDQMTEL 346

Query: 261 ATKRIASV 268
            T+R+  V
Sbjct: 347 VTRRMRKV 354


>gi|254411435|ref|ZP_05025212.1| hypothetical protein MC7420_1926 [Microcoleus chthonoplastes PCC
           7420]
 gi|196181936|gb|EDX76923.1| hypothetical protein MC7420_1926 [Microcoleus chthonoplastes PCC
           7420]
          Length = 118

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 45/82 (54%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           W  P   G ERL+N+  + LH  QKP  L+  I+++++  GD++ +PF G  ++  V+ +
Sbjct: 21  WSEPAVRGKERLKNRQAKCLHGNQKPLRLIELIILATSDVGDVVWEPFGGMCSAAVVSLR 80

Query: 244 LRRSFIGIEMKQDYIDIATKRI 265
             R     E+  DY  +A  R+
Sbjct: 81  KGRRCYSAEVNSDYYQLAKARL 102


>gi|329124207|ref|ZP_08252754.1| type III restriction/modification enzyme [Haemophilus aegyptius
           ATCC 11116]
 gi|327467632|gb|EGF13130.1| type III restriction/modification enzyme [Haemophilus aegyptius
           ATCC 11116]
          Length = 486

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 2/68 (2%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-I 260
           +L   +KPE+L+  I+  +T   DI+LD   GSGT+ AVA K+ R +IGIE + DYI+ +
Sbjct: 282 ELKNGKKPESLIETIIKLATNESDIVLDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIETL 340

Query: 261 ATKRIASV 268
           A +R+  V
Sbjct: 341 AVERLKKV 348


>gi|42779473|ref|NP_976720.1| DNA methylase, family protein [Bacillus cereus ATCC 10987]
 gi|42735389|gb|AAS39328.1| DNA methylase, family protein [Bacillus cereus ATCC 10987]
          Length = 413

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 111/264 (42%), Gaps = 38/264 (14%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
           K ++  VL  +  K+ +L+  DPPYN+   G   +  +          D  ++ EA+  F
Sbjct: 176 KKDTFDVL--MDGKAANLVVTDPPYNVNYEGTAGKIKN----------DNMAN-EAFYDF 222

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
             A        +  + +++V  +            +  F++    +W+K + +    GR 
Sbjct: 223 LLAAFQNTEAAMAKDASIYVFHADTEGLNFRRAFSDAGFYLSGTCIWKKQSLV---LGRS 279

Query: 145 -FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
            +Q  HE +++     K KG    Y   K               I    +  +N D    
Sbjct: 280 PYQWQHEPVLFGW---KKKGKHLWYSDRKQTT------------IWEFEKPKKNGD---- 320

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPT KP AL++  +++S+    I+LDPF GSG++    ++  R    IE+ + Y D+  K
Sbjct: 321 HPTMKPVALVAYPIMNSSLSNCIVLDPFGGSGSTLIACEQTDRICYTIELDEKYCDVIVK 380

Query: 264 RIASVQPLGNIELTVLTGKRTEPR 287
           R   ++ +GN +   L   R + R
Sbjct: 381 RY--IEQVGNSDGVFLLRDRLKFR 402


>gi|270639987|ref|ZP_06222113.1| modification methylase LlaFI [Haemophilus influenzae HK1212]
 gi|270317361|gb|EFA28892.1| modification methylase LlaFI [Haemophilus influenzae HK1212]
          Length = 127

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 9/110 (8%)

Query: 166 FNYDALKAANEDVQMRSDWL-IPICS-----GSERLRNKDGEKLHPTQKPEALLSRILVS 219
           ++ DA KA    V    D+L I +C       +  L  +   +L   +KPE+L+  I+  
Sbjct: 8   YSKDA-KAPRVQVLFAEDYLSISLCDLWTNINTTGLEAEGNVELKNGKKPESLIETIIKL 66

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRIASV 268
           +T   DI+LD   GSGT+ AVA K+ R +IGIE + DYI+ +A +R+  V
Sbjct: 67  ATNESDIVLDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIETLAVERLKKV 115


>gi|229520810|ref|ZP_04410232.1| hemagglutinin associated protein [Vibrio cholerae TM 11079-80]
 gi|229342043|gb|EEO07039.1| hemagglutinin associated protein [Vibrio cholerae TM 11079-80]
          Length = 236

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 107/256 (41%), Gaps = 55/256 (21%)

Query: 27  NSISVLEKLPAKSVDLIFADPPY-NLQLN---GQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++I+ L  + + SVDL+  DPPY +L+ +   G   R  +S   + ++ W +    E ++
Sbjct: 20  DAITWLRTIESNSVDLVITDPPYESLEKHRKIGTTTRLKNS--KSSSNQWFEIFPNERFE 77

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
                      R++K N   ++      +F I  + +++ F     IVW K         
Sbjct: 78  ELVSE----IYRIMKKNSHFYLFCDQETMFVIKPIAESMGFKFWKPIVWDKV-------- 125

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN----- 197
                             + G  ++Y A          R ++++    G  +L N     
Sbjct: 126 ------------------SIGMGYHYRA----------RYEFILFFEKGKRKLNNLSIPD 157

Query: 198 ----KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
               K   K +PT+KP  L   ++  S+   D+++DPF GSG  G  ++ L R+F G ++
Sbjct: 158 ILVEKRVWKGYPTEKPVNLAKTLIEQSSNEQDVVIDPFCGSGFVGQASELLNRNFRGNDL 217

Query: 254 KQDYIDIATKRIASVQ 269
             + + +   RI S++
Sbjct: 218 NIEAVKLTKTRINSIR 233


>gi|167724489|ref|ZP_02407725.1| DNA modification methylase RsrI [Burkholderia pseudomallei DM98]
          Length = 539

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 18/138 (13%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           LP  S+DLI ADPPY L   G+ Y  D           DK S  E + A+TR WL     
Sbjct: 43  LPDASIDLIVADPPYGL---GKDYGNDS----------DKRSGDE-HLAWTREWLELAVP 88

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
            LK  G+++V  ++     I + L+     ++N+I+W +  P      RRF + H+ + +
Sbjct: 89  KLKSTGSMYVFCTWQYAPEIFSFLKT-KLTMVNEIIWDRRVPSMGGTTRRFTSVHDNIGF 147

Query: 155 ASPSPKAKGYTFNYDALK 172
            + S   KGY F+ D ++
Sbjct: 148 FAVS---KGYYFDLDPVR 162


>gi|15669692|ref|NP_248505.1| type II R/M system modification methyltransferase
           [Methanocaldococcus jannaschii DSM 2661]
 gi|2500156|sp|Q58893|MTM5_METJA RecName: Full=Modification methylase MjaV; Short=M.MjaV; AltName:
           Full=N-4 cytosine-specific methyltransferase MjaV
 gi|1592134|gb|AAB99509.1| modification methylase, type II R/M system [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 292

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 115/284 (40%), Gaps = 60/284 (21%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS---S 77
           +KI   + +  +++L  K+VD++   PPYN+ +                  ++K+S   S
Sbjct: 4   NKIYCMDCLEGMKQLKDKTVDVVVTSPPYNIGI-----------------KYNKYSDNLS 46

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTL-----------WVIGSYHNIFRIGTMLQNLNFWIL 126
            E Y  +    +   +RVLK +G+            W+     N+ R    LQN   W+ 
Sbjct: 47  REDYLNWIEEVVKEIKRVLKDDGSFFINVGYTAKDPWIAFDVANVIRKHFKLQNTIHWVK 106

Query: 127 NDIVWRKS-NPMPNFRG-------------RRFQNAHETLIWASPSPKAK------GYTF 166
           +  + ++     PN  G             R     HE +   + +   K      G  +
Sbjct: 107 SIAIQKEDVGNYPNIIGDIAVGHYKPINSDRFLSIMHEYIFHFTKNGNVKLDKLAIGVPY 166

Query: 167 -NYDALKAANEDVQMR---SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR-ILVSST 221
            +   +K  N    +R   + W IP     E +++K+ E+ HP   P  L    I +   
Sbjct: 167 QDKSNIKRFNRKGDLRDRGNTWFIP----YETIQSKEKERPHPATFPPKLPEMCIKLHGV 222

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           K  +++LDPF G G++     +L   +IG E+ + Y  +A +RI
Sbjct: 223 KKTNLVLDPFMGIGSTAIACIRLGIDYIGFEIDEYYCRVAEERI 266


>gi|254805305|ref|YP_003083526.1| putative type III DNA modification methylase [Neisseria
           meningitidis alpha14]
 gi|254668847|emb|CBA06907.1| putative type III DNA modification methylase [Neisseria
           meningitidis alpha14]
          Length = 562

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 37/50 (74%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           T KPE LL ++L  +T PGD++LD F GSGT+GAVA K+ R +I +E+ +
Sbjct: 302 TPKPERLLEKVLQIATNPGDLVLDSFAGSGTTGAVAHKMGRRWIMVELGE 351


>gi|153852763|ref|ZP_01994200.1| hypothetical protein DORLON_00182 [Dorea longicatena DSM 13814]
 gi|160894987|ref|ZP_02075761.1| hypothetical protein CLOL250_02537 [Clostridium sp. L2-50]
 gi|149754405|gb|EDM64336.1| hypothetical protein DORLON_00182 [Dorea longicatena DSM 13814]
 gi|156863418|gb|EDO56849.1| hypothetical protein CLOL250_02537 [Clostridium sp. L2-50]
          Length = 273

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 102/256 (39%), Gaps = 40/256 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNL---------QLNGQLY---RPDHSLVDAVT 69
           +I+ G+++ +++       D +  DPPY           +   Q Y   + +++L D   
Sbjct: 30  RILHGDTLKLVKGFQPGIFDAVITDPPYASGGTKQNERNRTTNQKYSSMKAENALPDFDG 89

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
           D+ D+ S    +  +   WL   R+  K    + +   +     I   LQ   +      
Sbjct: 90  DNKDQRS----WTHWMAEWLYDVRKACKRGAPICLFIDWRQYPSITDALQWAGWIWRGTA 145

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
           VW K N  P  +  RF+   E ++W S  P                    M  +  +   
Sbjct: 146 VWDKGNSRP--QKGRFRQQAEYIVWGSNGP--------------------MPINRPVSCL 183

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
            G  R  N    ++H T+KP  L+  + +   +PG +ILDPF G+GT+   A +     +
Sbjct: 184 PGVFRYGNPQ-NRIHVTEKPLQLMKDV-IQICEPGGLILDPFAGAGTTILAAAESGFQAV 241

Query: 250 GIEMKQDYIDIATKRI 265
           GIE+   Y  + + R+
Sbjct: 242 GIEVTDAYYKLGSDRV 257


>gi|256810845|ref|YP_003128214.1| DNA methylase N-4/N-6 domain protein [Methanocaldococcus fervens
           AG86]
 gi|256794045|gb|ACV24714.1| DNA methylase N-4/N-6 domain protein [Methanocaldococcus fervens
           AG86]
          Length = 292

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 114/284 (40%), Gaps = 60/284 (21%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   + +  +++L  KSVD++   PPYN+ +                  ++K+S    
Sbjct: 4   NKIYCMDCLEGMKQLKDKSVDVVVTSPPYNIGI-----------------KYNKYSDNLG 46

Query: 81  YDAF---TRAWLLACRRVLKPNGTL-----------WVIGSYHNIFRIGTMLQNLNFWIL 126
            D +       +   +RVLK +G+            W+     N+ R    LQN   WI 
Sbjct: 47  RDDYLNWIEEVVREIKRVLKDDGSFFINIGYTAKDPWIAFDVANVIRKHFKLQNTIHWIK 106

Query: 127 NDIVWRKS-NPMPNFRG-------------RRFQNAHETLIWASPSPKAK------GYTF 166
           +  + ++     PN  G             R     HE +   + +   K      G  +
Sbjct: 107 SIAIQKEDVGNYPNIIGDIAVGHYKPINSDRFLSIMHEYIFHFTKNGNVKLDKLAIGVPY 166

Query: 167 -NYDALKAANEDVQMR---SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR-ILVSST 221
            +   +K  N    +R   + W IP     E +++K+ E+ HP   P  L    I +   
Sbjct: 167 QDKSNIKRFNRKGDLRDRGNTWFIP----YETIQSKEKERPHPATFPSKLPEMCIKLHGI 222

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           K  +++LDPF G G++     +L  ++IG E+ + Y  +A +RI
Sbjct: 223 KKTNLVLDPFMGIGSTAIACIRLGVNYIGFEIDEYYCRVAEERI 266


>gi|17545564|ref|NP_518966.1| hypothetical protein RSc0845 [Ralstonia solanacearum GMI1000]
 gi|17427857|emb|CAD14547.1| putative dna modification methylase protein [Ralstonia solanacearum
           GMI1000]
          Length = 411

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 39/62 (62%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           LHPT KP  L+ R + +S++PGD++LD F GSGT+   A+K  R    IE+   Y D+  
Sbjct: 329 LHPTMKPVELVERAIRNSSRPGDVVLDAFGGSGTTLIAAEKAARVARLIELDPKYADVIV 388

Query: 263 KR 264
           +R
Sbjct: 389 RR 390


>gi|311977254|gb|ADQ20507.1| M.BsaJI [Geobacillus stearothermophilus]
          Length = 437

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 106/267 (39%), Gaps = 45/267 (16%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           E+ +KII G+++ +L  +   S+ L F  PPY    N +    D+S+          +SS
Sbjct: 165 EYMNKIINGDALKILRSVENNSIHLTFTSPPY---YNAR----DYSI----------YSS 207

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI------------ 125
           +E Y  F         RV K    L V  S   I R+G    +  + I            
Sbjct: 208 YEEYLDFLEEVFSEVYRVTKDGRFLIVNTSPIIIPRVGRKYSSKRYPIPYDLHGRLVKQG 267

Query: 126 ---LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
              ++DI+W K       R   FQ   + L++   +   +   +   + +  + +++   
Sbjct: 268 WEFIDDIIWVKPEASVKNRIGGFQQFRKPLMYKPNAVTEQLMVYRKKSNRLIDWNIRAYE 327

Query: 183 DWLIPICSGSERLRNKDG----------EKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
           D    +   S+ L + +           +K+H    P+ L   ++   +  GD++ DPF 
Sbjct: 328 D---EVVEASKVLTDFETTNVWEIDPVYDKVHSAVFPKKLCDNVVKYYSMKGDLVFDPFV 384

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYID 259
           GSGT    A  L R     E+ ++Y +
Sbjct: 385 GSGTLAKSALSLERKVFMTEISKEYFE 411


>gi|226324846|ref|ZP_03800364.1| hypothetical protein COPCOM_02633 [Coprococcus comes ATCC 27758]
 gi|225207294|gb|EEG89648.1| hypothetical protein COPCOM_02633 [Coprococcus comes ATCC 27758]
          Length = 143

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 2/74 (2%)

Query: 198 KDGEK--LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           KD +K  +HPTQKP ALL  ++ + T   D +LD   GSG++G       R FIG E+  
Sbjct: 69  KDIQKSAVHPTQKPVALLEYLIKTYTNEADTVLDNCMGSGSTGVACVNTERKFIGFELDL 128

Query: 256 DYIDIATKRIASVQ 269
            + +IA +RI + +
Sbjct: 129 HFYEIAQERIMTTK 142


>gi|153854020|ref|ZP_01995353.1| hypothetical protein DORLON_01344 [Dorea longicatena DSM 13814]
 gi|149753402|gb|EDM63333.1| hypothetical protein DORLON_01344 [Dorea longicatena DSM 13814]
          Length = 270

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 96/252 (38%), Gaps = 32/252 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR--------PDHSLVDAVTDSWD 73
           +I+ G+++ +++       D +  DPPY      Q  R           S  +A+ D   
Sbjct: 30  RILHGDTLKLVKAFQPGIFDAVITDPPYASGGTKQNERNRTTNQKYSSMSAANALPDFDG 89

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                 ++  +   WL   R+  K    + +   +     I   LQ   +      VW K
Sbjct: 90  DNKDQRSWTHWMAEWLYDVRKACKKGAPICLFIDWRQYPSITDALQWAGWIWRGTAVWDK 149

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
            N  P  +GR F+   E ++W S  P                    M  +  +    G  
Sbjct: 150 GNSRPQ-KGR-FRQQAEYIVWGSNGP--------------------MPINRPVSCLPGVF 187

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           R  N    ++H T+KP  L+  + +   +PG +ILDPF G+GT+   A       +GIE+
Sbjct: 188 RYGNPQ-NRIHVTEKPLQLMKDV-IQICEPGGLILDPFAGAGTTVLAAVMTGYRAVGIEV 245

Query: 254 KQDYIDIATKRI 265
              Y  + + R+
Sbjct: 246 TDAYYKLGSDRV 257


>gi|325294788|ref|YP_004281302.1| DNA methylase N-4/N-6 domain protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065236|gb|ADY73243.1| DNA methylase N-4/N-6 domain protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 860

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 40/63 (63%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T+  E LL R++ S+    DIILD F GSGT+ AVA KL+R +IG+E+ + +  +   R+
Sbjct: 667 TENSEVLLKRVIQSTLNERDIILDFFLGSGTTTAVAHKLKRKWIGVELGEHFYSVILPRM 726

Query: 266 ASV 268
             V
Sbjct: 727 KKV 729


>gi|261839489|gb|ACX99254.1| Modification methylase CfrBI [Helicobacter pylori 52]
          Length = 404

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 105/260 (40%), Gaps = 54/260 (20%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K  ++ G++   L K+   S++LIF  PPY    N ++Y                 S ++
Sbjct: 143 KPSLLIGDNAQTLNKIVPNSINLIFTSPPY---YNARIY-----------------SDYK 182

Query: 80  AYDAFTRAW---LLACRRVLKPNGTLWVIG----------------SYHNIFRIGTMLQN 120
            Y  +  A    L AC RVL+  G   +I                  Y   F    +L +
Sbjct: 183 NYKDYLNAMSQSLKACFRVLE-EGRFIIINVSPVITKRAGREFESVRYPIHFDFHQILID 241

Query: 121 LNFWILNDIVWRKSN-PMPNFRGRRFQN-----------AHETLIWASPSP--KAKGYTF 166
             F+ +++I+W K +  +PN  G   QN           +   L++   +P    K    
Sbjct: 242 NGFYFVDEILWIKPDFSVPNRIGGYLQNKKPLGYKPNCVSESLLVYRKKAPFLLDKNIKI 301

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
               LK++ ++  +     +PI + +         K HP   PE+L  R+L   +   ++
Sbjct: 302 AEKRLKSSKQNNTLFGKKELPIETTNCWYITPKSSKDHPAVFPESLCERVLNYYSFENEV 361

Query: 227 ILDPFFGSGTSGAVAKKLRR 246
           + DPF GSGT G VAK + R
Sbjct: 362 VCDPFAGSGTFGMVAKSMGR 381


>gi|68535597|ref|YP_250302.1| putative DNA restriction-modification system, DNA methylase
           [Corynebacterium jeikeium K411]
 gi|68263196|emb|CAI36684.1| putative DNA restriction-modification system, DNA methylase
           [Corynebacterium jeikeium K411]
          Length = 614

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 38/56 (67%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           E    T KPE LL RI+  +T PGDI+LD F GSGT+ AVA+K+ R ++  E+ +D
Sbjct: 343 EDTFATPKPERLLERIIHIATNPGDIVLDVFAGSGTTAAVAQKMGRRWLSCELVED 398


>gi|57237552|ref|YP_178566.1| site-specific DNA-methyltransferase, putative [Campylobacter jejuni
           RM1221]
 gi|57166356|gb|AAW35135.1| site-specific DNA-methyltransferase, putative [Campylobacter jejuni
           RM1221]
          Length = 250

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 38/62 (61%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+HPTQKP  LL R++   T  GD+++DP  GSG++   A  L R   G E+K+D+   A
Sbjct: 177 KVHPTQKPVKLLERLITIFTDAGDVVIDPCAGSGSTLLAACNLNRKAYGFEIKKDFFKSA 236

Query: 262 TK 263
            +
Sbjct: 237 NE 238


>gi|326335107|ref|ZP_08201304.1| modification methylase HindIII [Capnocytophaga sp. oral taxon 338
           str. F0234]
 gi|325692637|gb|EGD34579.1| modification methylase HindIII [Capnocytophaga sp. oral taxon 338
           str. F0234]
          Length = 251

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 40/66 (60%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPT KP  L+  ++   T  G I+LDPF GSG++G       R +IG E++ +Y DI+ K
Sbjct: 178 HPTLKPVELMQHLVKLITFEGQIVLDPFSGSGSTGLACLMNDRKYIGYELETNYYDISLK 237

Query: 264 RIASVQ 269
           RI  ++
Sbjct: 238 RIEDLE 243


>gi|296100150|ref|YP_003620434.1| type III restriction-modification system methylation subunit
           [Leuconostoc kimchii IMSNU 11154]
 gi|295831580|gb|ADG39465.1| type III restriction-modification system methylation subunit
           [Leuconostoc kimchii IMSNU 11154]
          Length = 645

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 2/69 (2%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID- 259
           E +    KPE L+ RIL  ST   D++LD F GS T+ AVA K+ R FIG+E + DYI  
Sbjct: 450 ENVFTNPKPEQLIKRILEISTNENDLVLDFFMGSATTQAVAMKMNRRFIGVE-QMDYIKT 508

Query: 260 IATKRIASV 268
           ++ +R+  V
Sbjct: 509 VSVERLKKV 517


>gi|291521452|emb|CBK79745.1| DNA modification methylase [Coprococcus catus GD/7]
          Length = 267

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 96/252 (38%), Gaps = 32/252 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR--------PDHSLVDAVTDSWD 73
           +I+ G+++ +++       D +  DPPY      Q  R           S  +A+ D   
Sbjct: 27  RILHGDTLKLVKAFQPGIFDAVITDPPYASGGTKQNERNRTTNQKYSSMSAANALPDFDG 86

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                 ++  +   WL   R+  K    + +   +     I   LQ   +      VW K
Sbjct: 87  DNKDQRSWTHWMAEWLYDVRKACKKGAPICLFIDWRQYPSITDALQWAGWIWRGTAVWDK 146

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
            N  P  +GR F+   E ++W S  P                    M  +  +    G  
Sbjct: 147 GNSRPQ-KGR-FRQQAEYIVWGSNGP--------------------MPINRPVSCLPGVF 184

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           R  N    ++H T+KP  L+  + +   +PG +ILDPF G+GT+   A       +GIE+
Sbjct: 185 RYGNPQ-NRIHVTEKPLQLMKDV-IQICEPGGLILDPFAGAGTTVLAAVVTGYRAVGIEV 242

Query: 254 KQDYIDIATKRI 265
              Y  + + R+
Sbjct: 243 TDAYYKLGSDRV 254


>gi|330507788|ref|YP_004384216.1| DNA methylase [Methanosaeta concilii GP-6]
 gi|328928596|gb|AEB68398.1| DNA methylase [Methanosaeta concilii GP-6]
          Length = 312

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 117/291 (40%), Gaps = 66/291 (22%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
            +S+ V++ +P  SV+LI   PPY L     +Y+ ++  VDA            AY  + 
Sbjct: 38  ADSLEVMKNMPESSVNLIVTSPPYAL-----VYKKEYGNVDA-----------NAYVKWF 81

Query: 86  RAWLLACRRVLKPNGTLWV-IGSYHN-------IFRIGTMLQ-NLNFWILNDIVWRKSNP 136
             +     RVL  +G+L + IG   N        ++   +++    F +  +  W     
Sbjct: 82  MDFADQFLRVLTEDGSLVINIGGSWNRGKPTRSTYQFELIIELAKKFHLAQEFYWYNPAK 141

Query: 137 MP------NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ----------- 179
           +P        R  R +++ E ++W S SP  K    N   L+  ++D+Q           
Sbjct: 142 LPAPAEWVTVRRIRVKDSVELVLWLSKSPFPKAD--NRKILQPYSKDMQRLIERGYVAKK 199

Query: 180 ----------MRSDWLIPICSGSERLRNKDGE------------KLHPTQKPEALLSRIL 217
                      + D    I     ++ N D              K HP + P+ L    +
Sbjct: 200 RPSGHNITSKFQRDNKGAIPPNLLQVGNNDANSPYLQKCKESNMKPHPARFPKELPQLFI 259

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
              T  GD+++DPF GS  +G VA+  +R +IGIE  +DY+  +  R   +
Sbjct: 260 DFLTDQGDVVMDPFCGSNMTGIVAETRKRRWIGIESIEDYLKASEFRFPHI 310


>gi|261819793|ref|YP_003257899.1| DNA methylase N-4/N-6 [Pectobacterium wasabiae WPP163]
 gi|261603806|gb|ACX86292.1| DNA methylase N-4/N-6 domain protein [Pectobacterium wasabiae
           WPP163]
          Length = 329

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 132/316 (41%), Gaps = 79/316 (25%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
            +S+ +LE +P  S++L+   PP+ LQ   +    D                 +  D F 
Sbjct: 20  ADSLEMLEAVPDSSLNLVMTSPPFALQRKKEYGNHDQE---------------QYIDWFL 64

Query: 86  RAWLLACRRVLKPNGTLWVI--GSY---------HNIFRIGTMLQNLNFWILNDIVWRKS 134
           +   L  ++ LK +G+  V   GSY         +N   +  M+  + F +  D  W   
Sbjct: 65  KFGELVFKK-LKDDGSFVVDFGGSYMKGVPVRSVYNFRVMIRMIDEIGFHLAEDFYWFNP 123

Query: 135 NPMP------NFRGRRFQNAHETLIWASPS--PKA---KGYTFNYDALKAANEDV----- 178
           + +P      N R  R +++  T+ W S +  PK+   K      D +K   ED      
Sbjct: 124 SKLPSPIEWVNKRKLRVKDSVNTVWWFSKTEWPKSDVTKVLVPYSDRMKKLIEDPNKYYS 183

Query: 179 -QMR-------------------SDWL-IP-------ICSGSERLRNKDGEKLHPTQKPE 210
            +MR                   S+ L IP         SG +++    G K HP + P 
Sbjct: 184 PKMRPSGHDISSSFGKDNGGAIPSNLLQIPNSESNGGYLSGCKKI----GIKGHPARFPS 239

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA----TKRIA 266
            L    +   T+PGD+++D F GS T+G++A+KL R ++  E+  +Y+  +    T +  
Sbjct: 240 KLPEFFINMLTEPGDLVVDIFGGSNTTGSIAEKLNRKWLSFELSPEYVAASVFRFTSKNT 299

Query: 267 SVQPLGNIELTVLTGK 282
           S + L N+  ++L G+
Sbjct: 300 SSEKLQNMYDSILNGE 315


>gi|171920243|ref|ZP_02931612.1| type III restriction-modification system methylation subunit
           [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|171902642|gb|EDT48931.1| type III restriction-modification system methylation subunit
           [Ureaplasma parvum serovar 1 str. ATCC 27813]
          Length = 622

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRI 265
           +KPE L+  I+  STK  DI+LD   GSGT+ AVA K+ R +IGIE + DYI+ I  +R+
Sbjct: 437 KKPERLIKDIIKLSTKQNDIVLDFHLGSGTTCAVAHKMNRQYIGIE-QMDYIENITIERL 495

Query: 266 ASV 268
             V
Sbjct: 496 KKV 498


>gi|254374752|ref|ZP_04990233.1| predicted protein [Francisella novicida GA99-3548]
 gi|151572471|gb|EDN38125.1| predicted protein [Francisella novicida GA99-3548]
          Length = 839

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 115/296 (38%), Gaps = 83/296 (28%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
           ++L K   K +  I+ DPP+N          D    D   DS         + +     L
Sbjct: 421 TILPKFKEK-IQCIYIDPPFNTG-------SDFDYKDGYQDS--------TWLSIMYDRL 464

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF---WILNDIVW--------------- 131
              R  L+ +G+L++   Y   +R G  L N  F    +LN++V+               
Sbjct: 465 AIARDFLRDDGSLYLHLDYRANYR-GRELLNNTFGCDHLLNEVVYGYRIQGIKRNAYANK 523

Query: 132 -------RKSNPMPNFRGRRFQNAHETLIWASP-------SPKAKGYT-----------F 166
                   KS P  N     FQ   E  I+  P       SP+    T            
Sbjct: 524 HDTIYIYTKSKPDEN--KHYFQVEKERQIYNKPFIDTETISPEISSLTDKDFKYLIDSIL 581

Query: 167 NYDALKAANEDVQMRS-------------DWLIPICSGS-ERLRNKDGEKLHPTQKPEAL 212
           N   LK   +D+   S             D   P+ SGS E L+ K       TQK + L
Sbjct: 582 NKKVLKDRYKDLLFNSYYSDTFVRDVWDHDKTKPLISGSSEYLQFK-------TQKSQGL 634

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           LSR++ +S+K    I+D F GSGT+ A A KL R ++GIEM + + ++   R+  V
Sbjct: 635 LSRVISNSSKENHCIMDFFSGSGTTVATAHKLGRKWLGIEMGEHFDNVIIPRMKKV 690


>gi|193064850|ref|ZP_03045927.1| DNA methylase [Escherichia coli E22]
 gi|192927535|gb|EDV82152.1| DNA methylase [Escherichia coli E22]
          Length = 350

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 43/65 (66%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S+KPGD++ D F GSG++  +A +L R  IG+E+++D      +
Sbjct: 283 HPCEKPADMLRQIINASSKPGDVVADFFMGSGSTVKIALELGRQAIGVELEEDRFSQTVE 342

Query: 264 RIASV 268
            I ++
Sbjct: 343 EIRAL 347



 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 38/167 (22%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +++  +S+  +  LP  S+DLI  DPPY  ++ NG                WD  + ++ 
Sbjct: 11  ELVNADSLQYIATLPDNSIDLIVTDPPYFKVKPNG----------------WD--NQWKG 52

Query: 81  YDAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            + + R WL  C     RVLKP G+L++   +     I  M++   F +LN I+W K  P
Sbjct: 53  DEDYLR-WLDMCLAQFWRVLKPAGSLYLFSGHRLAADIEIMMRE-RFNVLNHIIWAK--P 108

Query: 137 MPNFRG------RRFQNAHETLIWASP-----SPKAKGYTFNYDALK 172
              + G      R +  A E +++A        PK+ GY      LK
Sbjct: 109 SGRWNGCNKESLRSYFPATERILFAEHYQGPYKPKSDGYAEKGSELK 155


>gi|167621206|ref|ZP_02389837.1| hypothetical protein BthaB_33186 [Burkholderia thailandensis Bt4]
          Length = 277

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 6/82 (7%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           Q+P ALL RI+  +T   D+I+DPF GSGT+   A  L R +IG +   D + I+ +R+A
Sbjct: 11  QQPLALLERIIEVTTNEEDLIVDPFMGSGTAIVAAVNLNRRWIGADTSDDAVTISAERLA 70

Query: 267 SVQPLGNIELTVLT----GKRT 284
            + P  ++ + VLT    G+RT
Sbjct: 71  KLLP--SMSVPVLTAEDLGERT 90


>gi|308234573|ref|ZP_07665310.1| DNA (cytosine-5-)-methyltransferase [Atopobium vaginae DSM 15829]
 gi|328944362|ref|ZP_08241825.1| methylase [Atopobium vaginae DSM 15829]
 gi|327491077|gb|EGF22853.1| methylase [Atopobium vaginae DSM 15829]
          Length = 655

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 55/101 (54%), Gaps = 13/101 (12%)

Query: 180 MRSDWLIP--ICSGSERLRNKDG---------EKLHPTQKPEALLSRILVSSTKPGDIIL 228
           + SD+LI   I +   + +NKDG                KPE L+  IL  S+ P D++L
Sbjct: 432 VNSDFLIKEFIATLLTKSKNKDGNNEITNLFSRDEFDYAKPEELIRSILEISSNPTDLVL 491

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYI-DIATKRIASV 268
           D   GSGT+ AVA K+ R +IG+E + DYI DI  +R+  V
Sbjct: 492 DFHLGSGTTAAVAHKMGRRYIGVE-QMDYIQDITVERLKKV 531


>gi|114326568|ref|YP_743727.1| DNA methylase N-4/N-6 domain-containing protein [Nitrosomonas
           eutropha C91]
 gi|114326627|ref|YP_743785.1| DNA methylase N-4/N-6 domain-containing protein [Nitrosomonas
           eutropha C91]
 gi|114309507|gb|ABI60749.1| DNA methylase N-4/N-6 domain protein [Nitrosomonas eutropha C91]
 gi|114309566|gb|ABI60807.1| DNA methylase N-4/N-6 domain protein [Nitrosomonas eutropha C91]
          Length = 662

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 24/166 (14%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +PT+KPE LL RI+ +    G ++LD F GSGT+   A+KL R FI  ++    +  +TK
Sbjct: 349 YPTRKPEQLLERIITAGCPAGGVVLDTFVGSGTTAVAAQKLGRKFIVADINLGAVQSSTK 408

Query: 264 RIASVQPLGNIELTVLTGKRTEPRVAF---------NLLVERGLIQPGQILTNA---QGN 311
           R+       N  + +L     E   AF         N  + R  +Q  ++L  A   Q  
Sbjct: 409 RLI------NSAVEILQQPLNEEERAFWGFEIHNVNNYDIFRNPVQAKELLIEALEIQKL 462

Query: 312 ISATVC---ADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEK 354
             +TV     DG ++   ++  ++R+  +   +E   G+++  +E+
Sbjct: 463 EFSTVFDGEKDGRMV---KIMPVNRIATRADLNELIAGFDYKAWER 505


>gi|290558935|gb|EFD92321.1| hypothetical protein BJBARM5_0955 [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 217

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 4/113 (3%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +K+  G+++ V+  LP++S+DLI+ DPP+    N  +   D + V    D WD       
Sbjct: 91  NKLYWGDNLHVMRTLPSESIDLIYIDPPFFSGRNYNMIFQDKNEVLTFEDIWD--GGLPT 148

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--ILNDIVW 131
           Y  +  A L+  +R+LKP G+++V   +H    +   +  +  +   LN+IVW
Sbjct: 149 YQVWLNARLVEMKRLLKPTGSIYVHLDWHASHYMKVEMDKIFGYDKFLNEIVW 201


>gi|320449664|ref|YP_004201760.1| DNA methylase [Thermus scotoductus SA-01]
 gi|320149833|gb|ADW21211.1| DNA methylase [Thermus scotoductus SA-01]
          Length = 319

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 115/293 (39%), Gaps = 71/293 (24%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF- 84
           G++  VL + P  SV L+   PPY               +    D   + +  E Y+AF 
Sbjct: 55  GDARKVLAEFPEASVHLVLTSPPY-------------WTLKRYEDVPGQMAHIEDYEAFL 101

Query: 85  ---TRAWLLACRRVLKPNGTLW-VIGSY---------HNIFRIGTMLQ----NLNFWILN 127
               R W  A R +L P G L  V+G           H +F +   +Q     L F  LN
Sbjct: 102 DELDRVWREAFR-LLVPGGRLIIVVGDVAVARRRFGRHLVFPLHADIQVRCRKLGFDNLN 160

Query: 128 DIVW-RKSNPMPNFRGRR------------FQNAHETLI-------WASPSPKAKGYTFN 167
            I+W +++N      GR              +   E ++       +  PSP+A+     
Sbjct: 161 PILWYKRTNASLEVEGRGVFLGKPYEPGAIIKTEVEYILMQRKPGGYRRPSPEAR----- 215

Query: 168 YDALKAANEDVQ--MRSDWL-IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
            +  + + ED     R  W  IP           +  +LHP   P  L  R++   +  G
Sbjct: 216 -EKSRLSKEDFHRFFRQIWEDIP----------GESTRLHPAPFPLELAERLVRMFSFVG 264

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
           D +LDPF G+GT+   A K  R  +G+E+   Y  +A +R A   P   +E+ 
Sbjct: 265 DTVLDPFAGTGTTLVAAAKWGRRALGVELVPGYAALARERFAREVPGEMLEVV 317


>gi|254560999|ref|YP_003068094.1| site-specific DNA methyltransferase [Methylobacterium extorquens
           DM4]
 gi|254268277|emb|CAX24213.1| putative site-specific DNA methyltransferase [Methylobacterium
           extorquens DM4]
          Length = 571

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 37/63 (58%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPT KP  L+  ++   T PG  +LDPF GSG++G  A +     +G E+  DY+ IA  
Sbjct: 468 HPTVKPSNLMRYLVRLVTPPGGTVLDPFLGSGSTGKAAVEEGFGIVGCELMPDYVRIARS 527

Query: 264 RIA 266
           RIA
Sbjct: 528 RIA 530


>gi|207725435|ref|YP_002255831.1| dna modification methylase protein [Ralstonia solanacearum MolK2]
 gi|206590671|emb|CAQ37633.1| dna modification methylase protein [Ralstonia solanacearum MolK2]
          Length = 422

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 39/62 (62%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           LHPT KP  L+ R + +S++PGD++LD F GSGT+   A+K  R    IE+   Y D+  
Sbjct: 329 LHPTMKPLELVERAIRNSSRPGDVVLDAFGGSGTTLIAAEKAARVARLIELDPKYADVIV 388

Query: 263 KR 264
           +R
Sbjct: 389 RR 390


>gi|260438180|ref|ZP_05791996.1| hemagglutinin associated protein [Butyrivibrio crossotus DSM 2876]
 gi|292809370|gb|EFF68575.1| hemagglutinin associated protein [Butyrivibrio crossotus DSM 2876]
          Length = 306

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 90/203 (44%), Gaps = 20/203 (9%)

Query: 78  FEAYDAF--TRAWLLACRRVLKPNGTLWVI------GSYHNIFRIGTMLQNLNFWILNDI 129
           F  YD F  T        RVLK    L  +       +Y  +++I    +   F   + +
Sbjct: 104 FAEYDCFRYTLNDFKEKARVLKEGCFLVEVLPAENENNYEYLYQIKNYAKEAGFLYYSKV 163

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR----SDWL 185
            W+K N + N  GR+ +N  + + ++    K K  +   D  K ++   Q+     S+ +
Sbjct: 164 TWKKGNFVSN-TGRKAKNTQDIMFFS----KGKARSMRIDK-KKSDSTGQIHYMSGSNGM 217

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P     + +  K+  K+H ++ P  L   IL   T  G+I+LD F GSG  G  A   +
Sbjct: 218 LPAMFDIQPVSKKN--KIHQSELPVELCEEILEYVTYQGEIVLDSFAGSGAVGVAALNKK 275

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R+ I IE+ ++ I+    R  SV
Sbjct: 276 RNCILIEILKENIEKIKNRFKSV 298


>gi|227553252|ref|ZP_03983301.1| DNA methylase N-4/N-6 [Enterococcus faecalis HH22]
 gi|227177618|gb|EEI58590.1| DNA methylase N-4/N-6 [Enterococcus faecalis HH22]
          Length = 422

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 101/236 (42%), Gaps = 20/236 (8%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           L  K  +L+  DPPYN+ +       + S  + + +  D  S  E +D F  +       
Sbjct: 190 LQGKKANLVVTDPPYNVAVKSDNKELNESGREKIMN--DDMSD-EEFDQFLMSVFQNYSN 246

Query: 95  VLKPNGTLWVI--GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL 152
            ++ +  ++V    SY   F     +      + +  +W K+N    +   R+Q  HE +
Sbjct: 247 AMRDDSAIYVFHGSSYQREFE--NSMNAAGIVVRSQCIWVKNNATFGWSQYRWQ--HEPV 302

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMR---SDWLIPICSGSERLRNKDGEKLHPTQKP 209
            +A    +A  +  +        +D+      + W +P        R+      HPTQKP
Sbjct: 303 FYAHKKKQAPSWYGDRKQTTIWQDDLLEDLPATIWKVP--------RDDVATYYHPTQKP 354

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
            +L++  + +S+K  DI+LD F GSG++    ++L R    +E+   + D+  +R 
Sbjct: 355 LSLIAIPVRNSSKRQDIVLDLFGGSGSTLMTCEQLNRICYTLELDPLFCDVIIERF 410


>gi|312888140|ref|ZP_07747723.1| DNA methylase N-4/N-6 domain protein [Mucilaginibacter paludis DSM
           18603]
 gi|311299407|gb|EFQ76493.1| DNA methylase N-4/N-6 domain protein [Mucilaginibacter paludis DSM
           18603]
          Length = 385

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 111/277 (40%), Gaps = 26/277 (9%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNL-QLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           K  I+ G +   +EKL   S+ L+   PPY + ++   +    +  +       +   +F
Sbjct: 19  KHSILTGAANKEMEKLNDHSISLVVTSPPYPMIEMWDDIMAAQNQSIAKEQLKGNGDIAF 78

Query: 79  E-AYDAFTRAWLLACRRVLKPNGTLWV-IGS-----------YHNIFRIGTMLQNLNFWI 125
           E  +    + W+    R L P G   + IG            Y+N  RI +    L F  
Sbjct: 79  ELMHQELDKIWI-QVERTLSPGGIACINIGDATRTINEHFSLYNNHSRIVSAFIKLGFNN 137

Query: 126 LNDIVWRKSNPMPN-FRGRRF--QNAHETLI--WASPSPKAKGYTFNYDALKAANEDV-- 178
           + +I+WRK    PN F G       A+ TL   W     K     F  DA K    +   
Sbjct: 138 MPNIIWRKQTNAPNKFMGSGMLPAGAYVTLEHEWILIFRKGGKRNFKTDAEKQLRRESAF 197

Query: 179 --QMRSDWLIPI--CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
             + R+ W   +    G+++       +      P  L  R++   +  GD +LDPF G+
Sbjct: 198 FWEERNVWFSDVWDLKGAKQRIESPESRNRSAAYPFELPYRLINMYSVKGDTVLDPFLGT 257

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           GT+   A    R+ IGIE+   +I I  + I +  P+
Sbjct: 258 GTTTLAAIASERNSIGIEIDPSFIPIVNENIINATPV 294


>gi|297379884|gb|ADI34771.1| Modification methylase [Helicobacter pylori v225d]
          Length = 404

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 103/257 (40%), Gaps = 48/257 (18%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K  ++ G++   L K+   S++LIF  PPY    N ++Y                + +++
Sbjct: 143 KPSLLIGDNAQTLNKIVPNSINLIFTSPPY---YNARIY--------------SDYKNYK 185

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIG----------------SYHNIFRIGTMLQNLNF 123
            Y       L AC RVL+  G   +I                  Y   F    +L +  F
Sbjct: 186 DYLNTMSQSLKACFRVLE-EGRFIIINVSPVITKRAGREFESVRYPIHFDFHQILIDNGF 244

Query: 124 WILNDIVWRKSN-PMPNFRGRRFQN-----------AHETLIWASPSP--KAKGYTFNYD 169
           + +++I+W K +  +PN  G   QN           +   L++   +P    K       
Sbjct: 245 YFVDEILWIKPDFSVPNRIGGYLQNKKPLGYKPNCVSESLLVYRKKAPFLLDKNIKIAEK 304

Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
            LK + ++  +     +PI + +         K HP   PE+L  R+L   +   +I+ D
Sbjct: 305 RLKPSKQNNTLFGKKELPIETTNCWYITPKSSKDHPAVFPESLCERVLNYYSFENEIVCD 364

Query: 230 PFFGSGTSGAVAKKLRR 246
           PF GSGT G VAK + R
Sbjct: 365 PFAGSGTFGMVAKSMGR 381


>gi|294340231|emb|CAZ88603.1| Phage related DNA methyltransferase [Thiomonas sp. 3As]
          Length = 421

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 40/62 (64%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           LHPT KP  L+ R + +S++PG+++LDPF GSGT+   A+K  R    IE+   Y D+  
Sbjct: 330 LHPTMKPVELVERAIRNSSRPGNVVLDPFGGSGTTLIAAEKSGRLARLIELDPKYADVIV 389

Query: 263 KR 264
           +R
Sbjct: 390 RR 391


>gi|75675738|ref|YP_318159.1| DNA methylase N-4/N-6 [Nitrobacter winogradskyi Nb-255]
 gi|74420608|gb|ABA04807.1| DNA methylase N-4/N-6 [Nitrobacter winogradskyi Nb-255]
          Length = 470

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 108/268 (40%), Gaps = 52/268 (19%)

Query: 20  KDKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +I  G+S +   V   L  +   L+  DPPY ++     Y P          +W + +
Sbjct: 197 RHRITNGDSTNPEDVARVLAGRVPHLMVTDPPYGVK-----YDP----------AWRQAA 241

Query: 77  SFEAYDAFT-------RA-WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
              + DA T       RA W  A          +W  G+Y     +   L    F I   
Sbjct: 242 GVTSKDAATGKVLNDDRADWREAWELFPGDVAYIWHAGAY--CGDVANSLTACRFKIRAH 299

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWAS-----------PSPKAKGYTFNYDALKAANED 177
           IVW K   +       FQ  HE   +A            P  +   YT   D  +   E 
Sbjct: 300 IVWVKQRHVLGRGDYHFQ--HEPCFYAVKEGADERWHFVPEHEVATYTVR-DGERGHYEG 356

Query: 178 VQMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
            + +S  W I      E ++++ G   H TQKP   + R + ++++PG+++ +PF GSGT
Sbjct: 357 GRKQSTVWNI------EHVKSETG---HGTQKPVEAMKRPIENNSQPGEMVYEPFSGSGT 407

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           +   A+   R    IE+   Y+D+A KR
Sbjct: 408 TLIAAEITGRKCFAIELNPLYVDVAVKR 435


>gi|299067591|emb|CBJ38795.1| putative dna modification methylase protein [Ralstonia solanacearum
           CMR15]
          Length = 411

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 39/62 (62%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           LHPT KP  L+ R + +S++PGD++LD F GSGT+   A+K  R    IE+   Y D+  
Sbjct: 329 LHPTMKPVELVERAIRNSSRPGDVVLDAFGGSGTTLIAAEKAARVARLIELDPRYADVIV 388

Query: 263 KR 264
           +R
Sbjct: 389 RR 390


>gi|311766116|emb|CBW29403.1| unnamed protein product [Haemophilus influenzae 10810]
          Length = 446

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 44/63 (69%), Gaps = 2/63 (3%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRI 265
           +K E L+S+I+ ++T   DI+LD   GSGT+ AVA K+ R +IGIE + DYI+ +A +R+
Sbjct: 247 KKGERLISQIIKTATNESDIVLDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIETLAVERL 305

Query: 266 ASV 268
             V
Sbjct: 306 KKV 308


>gi|219872033|ref|YP_002476408.1| Modification methylase HindIII [Haemophilus parasuis SH0165]
 gi|219692237|gb|ACL33460.1| Modification methylase HindIII (M.HindIII) [Haemophilus parasuis
           SH0165]
          Length = 331

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 64/297 (21%), Positives = 113/297 (38%), Gaps = 48/297 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG--QLYRPDHSLVDAVTDSWDKFSS 77
           KD I   +SI  ++ + + S+  I +D PY +  +    L+   +S +   + +  K S 
Sbjct: 2   KDCIYNDDSIIAIKNIKSNSIHSIISDIPYGIDYDDWDTLHSNTNSALGGSSIAQQKTSL 61

Query: 78  F------------------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
           F                  + Y  +  +W     RVLK   ++++        R+    +
Sbjct: 62  FKRRGKPLNGWSEADKRRPQEYQEWVESWSNEWYRVLKSGSSVFIFAGRQFAHRVIVAFE 121

Query: 120 NLNFWILNDIVWRKSNP-------------------MPNFRGRRFQNAH---ETLIWASP 157
           N  F   + + W +                         + G R  N     E ++W   
Sbjct: 122 NSGFTFKDMLSWERDKAPHRAQRISCVFEKRGDTFNQQKWAGWRVANLRPIFEPILWFQK 181

Query: 158 SPKAKGYTFN---YDALKAANEDVQMRSDWLIPICSGSERLR---NKDGEKLHPTQKPEA 211
             K  G   +    + + A NE+     +      + S   +     +  K H TQKP  
Sbjct: 182 PYKTGGTLADNLIENEVGAWNENALTSWNIQRGALNHSNMFKVQVTTEDRKYHITQKPLN 241

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           L+  ++   TK   I+LDPF GS ++   A++L R FIG E  ++  DIA KR+ + 
Sbjct: 242 LMKLLVELVTKEKQIVLDPFAGSASTLLAARELNRHFIGFEKNKEIYDIAVKRLENT 298


>gi|257058544|ref|YP_003136432.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 8802]
 gi|256588710|gb|ACU99596.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 8802]
          Length = 442

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +PT+K   LLSRI+ +S+   D++LD F GSGT+ AVA  L R +IGI+   + I    K
Sbjct: 316 YPTEKNPDLLSRIIKASSNKHDLVLDCFSGSGTTLAVASDLERRWIGIDNSSEAIVTTLK 375

Query: 264 RIAS-VQPLGNI 274
           R A   +P+G+ 
Sbjct: 376 RFAQGCEPMGDF 387


>gi|261838076|gb|ACX97842.1| type II m4C methyltransferase [Helicobacter pylori 51]
 gi|317177507|dbj|BAJ55296.1| putative type II cytosine specific methyltransferase [Helicobacter
           pylori F16]
          Length = 404

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 104/260 (40%), Gaps = 54/260 (20%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K  ++ G++   L K+   S++LIF  PPY    N ++Y                 S ++
Sbjct: 143 KPSLLIGDNAQTLNKIVPNSINLIFTSPPY---YNARIY-----------------SDYK 182

Query: 80  AYDAFTRAW---LLACRRVLKPNGTLWVIG----------------SYHNIFRIGTMLQN 120
            Y  +  A    L AC RVL+  G   +I                  Y   F    +L +
Sbjct: 183 NYKDYLNAMSQSLKACFRVLE-EGRFIIINVSPVITKRAGREFESVRYPIHFDFHQILID 241

Query: 121 LNFWILNDIVWRKSN-PMPNFRGRRFQN-----------AHETLIWASPSP--KAKGYTF 166
             F+ +++I+W K +  +PN  G   QN           +   L++   +P    K    
Sbjct: 242 NGFYFVDEILWIKPDFSVPNRIGGYLQNKKPLGYKPNCVSESLLVYRKKAPFLLDKNIKI 301

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
               LK + ++  +     +PI + +         K HP   PE+L  R+L   +   ++
Sbjct: 302 AEKRLKPSKQNNTLFGKKELPIETTNCWYITPKSSKDHPAVFPESLCERVLNYYSFENEV 361

Query: 227 ILDPFFGSGTSGAVAKKLRR 246
           + DPF GSGT G VAK + R
Sbjct: 362 VCDPFAGSGTFGMVAKSMGR 381


>gi|170695981|ref|ZP_02887120.1| ParB domain protein nuclease [Burkholderia graminis C4D1M]
 gi|170139165|gb|EDT07354.1| ParB domain protein nuclease [Burkholderia graminis C4D1M]
          Length = 473

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 92/224 (41%), Gaps = 25/224 (11%)

Query: 42  LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA-WLLACRRVLKPNG 100
           L+  DPPY +  +   +R    +V+          S       TRA W  A +       
Sbjct: 189 LMITDPPYGVDYDAD-WRNRVVMVEGERRGTHGTRSTGKVLNDTRADWREAWQHFPGDVA 247

Query: 101 TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
            +W  G + ++  +   L+  NF I + I+W K   + + RG  +   HE   +A    K
Sbjct: 248 YVWHAGVFADV--VAGSLRACNFGIRSQIIWAKHTLVVS-RGH-YHWQHEPCWYAVREGK 303

Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
             G+T           D    + W I      E  R++ G   H TQKP   + R + + 
Sbjct: 304 TAGWTG----------DRSQSTLWQI------EHRRSESG---HSTQKPVEAMRRPIENH 344

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           T PG  + +PF GSGT+   A+ + R    IE+   Y D+A  R
Sbjct: 345 TSPGQAVYEPFSGSGTTIVAAESVGRVCHAIELNPAYCDVAVLR 388


>gi|39653711|ref|NP_945276.1| transferase [Streptococcus phage EJ-1]
 gi|38638879|emb|CAE82119.1| transferase [Streptococcus phage EJ-1]
          Length = 421

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 32/242 (13%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99
           +DL   DPPYN+   G     D ++   + DS D  S    +  F R         LK  
Sbjct: 182 IDLYVTDPPYNVAYQGG---TDEAMT-IMNDSMDDVS----FRQFLRDAFAVANNHLKSG 233

Query: 100 GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNAHETLIWASPS 158
           G  ++  +          ++   + +   I+W K+  +    GR+ +Q  HE  ++    
Sbjct: 234 GAFYIWHADSEGLNFRAAVKETGWLLKQSIIWVKNAIV---LGRQDYQWKHEPCLYGWKD 290

Query: 159 PKAKGYTFNYDALKAANEDVQ----------------MRSDWLIPICSGSERLRNKDGEK 202
             +  +  N        ED +                M+      +    + +RN     
Sbjct: 291 GASHYFVDNRSLATVIEEDEENLKEMTKSELISYIKTMQDTSPTTVFYEDKPVRND---- 346

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +HPT KP  L++R +++S+K GD ILD F G G++  V ++  R    +E+   Y++   
Sbjct: 347 IHPTMKPLKLIARCVLNSSKKGDKILDSFNGGGSTLMVCERSERVCYAMELDPVYVERTI 406

Query: 263 KR 264
           KR
Sbjct: 407 KR 408


>gi|220934219|ref|YP_002513118.1| DNA methylase N-4/N-6 domain-containing protein [Thioalkalivibrio
           sp. HL-EbGR7]
 gi|219995529|gb|ACL72131.1| DNA methylase N-4/N-6 domain-containing protein [Thioalkalivibrio
           sp. HL-EbGR7]
          Length = 330

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 39/66 (59%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           +LHP + P  L    +   T+PGDI+LDPF GS T+G  A+ L R +I IE  ++YI  +
Sbjct: 255 QLHPARMPSDLAKFFIKFLTEPGDIVLDPFGGSNTTGCAAENLERFWISIEASEEYIKGS 314

Query: 262 TKRIAS 267
             R  +
Sbjct: 315 RGRFGN 320


>gi|254450262|ref|ZP_05063699.1| modification methylase DpnIIB [Octadecabacter antarcticus 238]
 gi|198264668|gb|EDY88938.1| modification methylase DpnIIB [Octadecabacter antarcticus 238]
          Length = 422

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 2/87 (2%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +++D + +H TQKP   + R +++++ PG  + +PF GSGT+   A+   R   GIE+  
Sbjct: 326 KDQDADTVHGTQKPVECMRRPILNNSSPGQAVFEPFMGSGTTLIAAETTARVCYGIELNP 385

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGK 282
            Y+D+  +R  +    G   L V TG+
Sbjct: 386 AYVDVVIERWQAFT--GKDALLVETGE 410


>gi|254441682|ref|ZP_05055175.1| ParB-like nuclease domain family [Octadecabacter antarcticus 307]
 gi|198251760|gb|EDY76075.1| ParB-like nuclease domain family [Octadecabacter antarcticus 307]
          Length = 420

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 42/69 (60%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +++D   +H TQKP   + R +++++ PG  + +PF GSGT+   A+   R   GIE+  
Sbjct: 324 KDQDATTVHGTQKPVECMRRPILNNSSPGQAVYEPFMGSGTTLIAAETTGRVCFGIELNP 383

Query: 256 DYIDIATKR 264
            Y+D+A +R
Sbjct: 384 AYVDVAIER 392


>gi|260576702|ref|ZP_05844688.1| ParB domain protein nuclease [Rhodobacter sp. SW2]
 gi|259021069|gb|EEW24379.1| ParB domain protein nuclease [Rhodobacter sp. SW2]
          Length = 419

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 22/160 (13%)

Query: 108 YHNIFRIGTMLQNL---NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
           +H     G +  +L    F + + I+W K   + +     +Q  HE   W +   K KG+
Sbjct: 251 WHGALHAGEVADSLAAAGFAVRSQIIWAKDRLVLSRGDYHWQ--HEP-CWYAVRVKGKGH 307

Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
                       D +  + W I   SG    +++D   +H TQKP   + R +++++ PG
Sbjct: 308 WAG---------DRKQTTLWHI---SG----KDQDAATVHGTQKPVECMRRPILNNSSPG 351

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
             + +PF GSGT+   A+   R   GIE+   Y+D+A +R
Sbjct: 352 QAVFEPFMGSGTTLIAAETTGRVCFGIELNPAYVDLAIER 391


>gi|75909223|ref|YP_323519.1| DNA methylase N-4/N-6 [Anabaena variabilis ATCC 29413]
 gi|75702948|gb|ABA22624.1| DNA methylase N-4/N-6 [Anabaena variabilis ATCC 29413]
          Length = 301

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 63/271 (23%), Positives = 108/271 (39%), Gaps = 44/271 (16%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQL-YRPDHSLVDAVTDSWDKFSSFEAYDAF 84
           G+ + +++ +P  SV+LI   PP+ L    +         ++      D+F    A +  
Sbjct: 28  GDCLEIIKSIPDNSVNLILTSPPFALTRKKEYGNESAEKYIEWFLPFADEFKRVLAENG- 86

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN----- 139
             +++L       P   +  I  Y  + R   + + + F++  +        +P      
Sbjct: 87  --SFILDLGGAYLPGNPVRSIYQYELLVR---LCKEVGFFLAQEFYHYNPARLPTPAEWV 141

Query: 140 -FRGRRFQNAHETLIWAS--PSPKA------KGYTFNYDALKAANEDVQMRSDW------ 184
             R  R ++A   + W S  P+PKA      K Y+ +   L       Q+R         
Sbjct: 142 TIRRVRVKDAVNIVWWLSKTPNPKADNKKILKPYSQSMKRLLKKGYKAQVRPSGHDISDK 201

Query: 185 ------------LIPIC---SGSERLR--NKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
                       L+ I    S S  LR     G K HP + P+      +   T  GD++
Sbjct: 202 FQKDNQGAIPPNLLEIANTESNSTYLRRCKAAGVKPHPARFPQGFAEFFIKFLTDEGDLV 261

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           LDPF GS T+G VA+  +R +I +E+ QDY+
Sbjct: 262 LDPFAGSNTTGFVAETFQRRWIAVEINQDYV 292


>gi|308183475|ref|YP_003927602.1| type IIS restriction enzyme M1 protein (mod) [Helicobacter pylori
           PeCan4]
 gi|308065660|gb|ADO07552.1| type IIS restriction enzyme M1 protein (mod) [Helicobacter pylori
           PeCan4]
          Length = 136

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 17/140 (12%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   +  + L+KL  KSVDL   DPPYNL++                 SWD F + E 
Sbjct: 4   NKIYIEDVFTFLDKLEDKSVDLAIIDPPYNLKIA----------------SWDSFKNDEE 47

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           +  F+  W+      LK  G+ ++  +  N       L++     LN I W K +   N 
Sbjct: 48  FLTFSYTWIDKMLPKLKDTGSFYIFNTPFNCALFLAYLRHKKVHFLNFITWVKKDGFANA 107

Query: 141 RGRRFQNAHETLIWASPSPK 160
           + +R+ +A E++++ S   K
Sbjct: 108 K-KRYNHAQESILFYSMHKK 126


>gi|206895915|ref|YP_002246966.1| modification methylase, type III R/M system [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738532|gb|ACI17610.1| modification methylase, type III R/M system [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 1129

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 41/63 (65%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T+  E LL R++ S++  GD+++D F GSGT+ AVA KL R +IG+EM + +  +   R+
Sbjct: 827 TENSEILLKRVIESTSNRGDLVMDFFLGSGTTTAVAHKLGRKWIGVEMGEHFWTVVLPRM 886

Query: 266 ASV 268
             V
Sbjct: 887 KKV 889


>gi|254804607|ref|YP_003082828.1| putative type II DNA modification methylase [Neisseria meningitidis
           alpha14]
 gi|15982212|emb|CAC85161.1| unnamed protein product [Neisseria meningitidis]
 gi|254668149|emb|CBA04786.1| putative type II DNA modification methylase [Neisseria meningitidis
           alpha14]
          Length = 461

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 99/262 (37%), Gaps = 39/262 (14%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K+ ++  +   VL+ +P  SV L F  PPY    N +    D+S+          + S+E
Sbjct: 186 KNVVVNSDVRDVLQLVPEDSVHLTFTSPPY---YNAR----DYSI----------YPSYE 228

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGS---------------YHNIFRIGTMLQNLNFW 124
           AY  F +       R+ K    L V  S               Y   F +   L  + + 
Sbjct: 229 AYLVFLQEVFKEIHRITKEGRFLIVNTSPVIVPRISRAHSSKRYPIPFDLHHRLIQIGWE 288

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
            ++DIVW K       R   FQ   + L +   S       +     +  + ++      
Sbjct: 289 FIDDIVWMKPEYSVKNRIGGFQQHRKPLAYKPNSVTEYLMVYRKQTDRLLDWNMNQYDKQ 348

Query: 185 LIP---ICSGSERLR----NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
            I    +  G E       +   +K+H    P  L  RI+   +   D++ DPF GSGT 
Sbjct: 349 TIEESKVADGFETTNVWQIHPKSDKVHSAIFPADLCKRIVEYYSFKDDLVFDPFGGSGTL 408

Query: 238 GAVAKKLRRSFIGIEMKQDYID 259
           G VAKKL R F   E  + Y +
Sbjct: 409 GRVAKKLGRHFFLTEKDEKYFE 430


>gi|254493898|ref|ZP_05107069.1| LOW QUALITY PROTEIN: twin-argninine leader-binding protein DmsD
           [Neisseria gonorrhoeae 1291]
 gi|226512938|gb|EEH62283.1| LOW QUALITY PROTEIN: twin-argninine leader-binding protein DmsD
           [Neisseria gonorrhoeae 1291]
          Length = 589

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 2/68 (2%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-I 260
           +L   +KPE+L+  I+  +T   DI+LD   GSGT+ AVA K+ R +IGIE + DYI+ +
Sbjct: 385 ELKNGKKPESLIETIIKLATNENDIVLDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIETL 443

Query: 261 ATKRIASV 268
           A +R+  V
Sbjct: 444 AVERMKKV 451


>gi|194337015|ref|YP_002018809.1| DNA methylase N-4/N-6 domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309492|gb|ACF44192.1| DNA methylase N-4/N-6 domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 547

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 39/57 (68%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           + E +  T KPE L+ RI+  +++ GD++LD F GSGT+ AV  K+ R +IGIE+ +
Sbjct: 295 NSENVFATPKPEKLVYRIMALASREGDLVLDSFLGSGTTAAVVHKMGRKWIGIELGE 351


>gi|255505540|ref|ZP_05346737.3| putative adenine specific DNA methyltransferase [Bryantella
           formatexigens DSM 14469]
 gi|255267130|gb|EET60335.1| putative adenine specific DNA methyltransferase [Bryantella
           formatexigens DSM 14469]
          Length = 467

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 103/253 (40%), Gaps = 30/253 (11%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW-----DKFSSFEAYDAFTRAWL 89
           +     DLI  DPPYN+    +    + S     T +      DK +  + Y+   R + 
Sbjct: 202 MAGSEADLILTDPPYNVDYEAKDKSLERSYKRNTTRTTNEILNDKMAEDDFYNFLYRIFS 261

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNA 148
             C  V K    ++V  +               F +   ++W K+  +    GR+ +   
Sbjct: 262 NYCD-VAKAGAAVYVFHADSEGLAFRQAFAAAGFKLAEVLIWEKNQFVI---GRQDYHWR 317

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANED----VQMRSDWLIPICSGSERLRNK------ 198
           HE +++      A  +  +        ED      M+ D L+      ER+R        
Sbjct: 318 HEPILYGWKEGTAHYFIDDRSQDNIFIEDDIDFKAMKKDDLVAYI---ERIREAFMARTS 374

Query: 199 -DGEK------LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
              EK      +HPT KP AL+ R++ +S++ G+I+ D F GSGT+   A++L R    +
Sbjct: 375 VQFEKKPARSDMHPTMKPVALVGRLMANSSRRGEIVADFFGGSGTTLIAAEQLGRVAYLM 434

Query: 252 EMKQDYIDIATKR 264
           E+   Y D+  KR
Sbjct: 435 EISPKYCDVIIKR 447


>gi|254521561|ref|ZP_05133616.1| type III restriction-modification system, methyltransferase
           [Stenotrophomonas sp. SKA14]
 gi|219719152|gb|EED37677.1| type III restriction-modification system, methyltransferase
           [Stenotrophomonas sp. SKA14]
          Length = 508

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 41/63 (65%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T KPE LL R++  +++ GD++LD F GS T+ AVA K+RR +IGIE+ +    +   R+
Sbjct: 305 TPKPERLLQRVIHIASEEGDLVLDSFLGSATTSAVAHKMRRKWIGIEVGEHARLLGQPRM 364

Query: 266 ASV 268
             V
Sbjct: 365 KKV 367


>gi|309799883|ref|ZP_07694088.1| type III restriction-modification system: methylase [Streptococcus
           infantis SK1302]
 gi|308116473|gb|EFO53944.1| type III restriction-modification system: methylase [Streptococcus
           infantis SK1302]
          Length = 262

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 3/75 (4%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD---YIDIATK 263
           +KPE L+ +I   +T+PGD +LD F GSGT+ AVA K+ R ++GIE+      +  +   
Sbjct: 60  KKPEQLIRQIFEMTTEPGDWVLDSFLGSGTTAAVATKMDRKWVGIELGNHAYTHCKVRLD 119

Query: 264 RIASVQPLGNIELTV 278
           RI + +  G I   V
Sbjct: 120 RIVNGEDAGGITKAV 134


>gi|46581282|ref|YP_012090.1| adenine specific DNA methyltransferase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46450703|gb|AAS97350.1| adenine specific DNA methyltransferase, putative [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311234947|gb|ADP87801.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio vulgaris RCH1]
          Length = 452

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 113/277 (40%), Gaps = 54/277 (19%)

Query: 22  KIIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +++ G+S SV   +  +  +  D+++ DPPYN+  +G+  +  +          DK S  
Sbjct: 167 RLLCGDSTSVEDVVRLMAGEQADMLWTDPPYNVDYSGKAGKIRN----------DKMSP- 215

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYH---NIFRIGTMLQNLNFWILNDIVWRKSN 135
           E +DAF    L      L      +V  S       FR      +  + + + ++WRK  
Sbjct: 216 EDFDAFLLRLLSRSYEALADGAAAYVAHSEAGGGTAFR--KAFAHAGYKLASCLIWRKHQ 273

Query: 136 PMPNFRGRRFQNAHETLIWA-SPSPKAKGY----------TFNYDALKAANEDVQMRSDW 184
            +       +Q  HE +++   P+ K + Y           F    +  A E V     W
Sbjct: 274 LVLGRGDYHWQ--HEPILYGWKPTGKHRWYGNRKHTTLLEHFAGQTVLPAGEGV-----W 326

Query: 185 LIPICSGSERLRNKD-----------------GEKLHPTQKPEALLSRILVSSTKPGDII 227
            +        +R +D                   +LHPT KP AL+ R++ +S+  G ++
Sbjct: 327 QVATGDAVLLIRGQDVTVEEVSTSILAVAKPARSELHPTMKPVALVERMVANSSPRGGLV 386

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           LDP  GSGT+    +++ R    +E+   + D+  +R
Sbjct: 387 LDPCGGSGTTLIACERMGRRCNTMELDPRFADVIVRR 423


>gi|237738209|ref|ZP_04568690.1| chromosome partitioning protein parB [Fusobacterium mortiferum ATCC
           9817]
 gi|229420089|gb|EEO35136.1| chromosome partitioning protein parB [Fusobacterium mortiferum ATCC
           9817]
          Length = 439

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 110/263 (41%), Gaps = 51/263 (19%)

Query: 32  LEKL-PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
           +EKL    ++DL+  DPPYN+       +  +          D  SS + Y+ F + +  
Sbjct: 175 VEKLVDGATIDLMITDPPYNVNYESTAGKIKN----------DNMSSNDFYE-FLKKFYA 223

Query: 91  ACRRVLKPNGTLWVI--GSYHNIFR-----IGTMLQNLNFWILN-------DIVWRKSNP 136
               V++     ++    S    FR     +G  +     W+ N       D  WR    
Sbjct: 224 NAFSVMRDGAAFYIFHADSETKAFRGACEEVGFKISQCLIWVKNAFNLSMQDYHWRHE-- 281

Query: 137 MPNFRGRRFQNAH--------ETLIWASPSPKAKGYTF---NYDALKAANEDVQMRSDWL 185
            P   G +   AH        +T++    S K+K  T     Y  L+   E+V       
Sbjct: 282 -PCLYGWKLGTAHYFIADRSQDTILEDIESLKSKSKTELLEMYLTLQKTLENVS------ 334

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
             I   ++ L+N     +HPT KP  LL+R++V+S++    ILD F GSG++   A++L 
Sbjct: 335 -TIIRENKPLKND----VHPTMKPLKLLARLMVNSSQKEWNILDLFGGSGSTMMTAEQLG 389

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R    +E    + D+  KR ASV
Sbjct: 390 RKSYLMEYDPRFADVIVKRFASV 412


>gi|315653150|ref|ZP_07906075.1| type III restriction-modification system: methylase [Lactobacillus
           iners ATCC 55195]
 gi|315489515|gb|EFU79152.1| type III restriction-modification system: methylase [Lactobacillus
           iners ATCC 55195]
          Length = 654

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 54/101 (53%), Gaps = 13/101 (12%)

Query: 180 MRSDWLIP--ICSGSERLRNKDG---------EKLHPTQKPEALLSRILVSSTKPGDIIL 228
           + SD+LI   I +   + +NKDG                KPE L+  IL   T P D++L
Sbjct: 432 VNSDFLIKEFIATLLAKSKNKDGNNEITDLFSRDEFDYAKPEELIKAILKIVTNPSDLVL 491

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYI-DIATKRIASV 268
           D   GSGT+ AVA K+ R +IG+E + DYI DI  +R+  V
Sbjct: 492 DFHLGSGTTAAVAHKMGRRYIGVE-QMDYIQDITVERLKKV 531


>gi|227548384|ref|ZP_03978433.1| DNA restriction-modification system, DNA methylase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227079541|gb|EEI17504.1| DNA restriction-modification system, DNA methylase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 667

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 39/58 (67%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           T KPE LL RI+  +T PGDI+LD F GSGT+ AVA+K+ R ++  E+  D  +  T+
Sbjct: 401 TPKPERLLERIIHIATNPGDIVLDVFAGSGTTAAVAQKMGRRWVTCELVDDTFNSFTR 458


>gi|118576466|ref|YP_876209.1| DNA modification methylase [Cenarchaeum symbiosum A]
 gi|118194987|gb|ABK77905.1| DNA modification methylase [Cenarchaeum symbiosum A]
          Length = 259

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 38/62 (61%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP QKP   +  ++  S+K GD+++DP  GSGT+G V   L R  +  +M ++Y  +A K
Sbjct: 192 HPAQKPLKTIEPLVKMSSKEGDLVIDPMCGSGTTGVVCNMLNRKAVLCDMSEEYTALARK 251

Query: 264 RI 265
           R+
Sbjct: 252 RV 253


>gi|317009298|gb|ADU79878.1| putative type II cytosine specific methyltransferase [Helicobacter
           pylori India7]
          Length = 404

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 104/260 (40%), Gaps = 54/260 (20%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K  ++ G++   L K+   S++LIF  PPY    N ++Y                 S ++
Sbjct: 143 KPSLLIGDNAQTLNKIVPNSINLIFTSPPY---YNARIY-----------------SDYK 182

Query: 80  AYDAFTRAW---LLACRRVLKPNGTLWVIG----------------SYHNIFRIGTMLQN 120
            Y  +  A    L AC RVL+  G   +I                  Y   F    +L +
Sbjct: 183 NYKDYLNAMSQSLKACFRVLE-EGRFIIINVSPVITKRAGREFESVRYPIHFDFHQILID 241

Query: 121 LNFWILNDIVWRKSN-PMPNFRGRRFQN-----------AHETLIWASPSP--KAKGYTF 166
             F+ +++I+W K +  +PN  G   QN           +   L++   +P    K    
Sbjct: 242 NGFYFVDEILWIKPDFSVPNRIGGYLQNKKPLGYKPNCVSESLLVYRKKAPFLLDKNIKI 301

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
               LK + ++  +     +PI + +         K HP   PE+L  R+L   +   ++
Sbjct: 302 AEKRLKPSKQNNTLFGKKELPIETTNCWYITPKSSKDHPAVFPESLCERVLNYYSFENEV 361

Query: 227 ILDPFFGSGTSGAVAKKLRR 246
           + DPF GSGT G VAK + R
Sbjct: 362 VCDPFAGSGTFGMVAKSMGR 381


>gi|126661667|ref|ZP_01732677.1| hypothetical protein CY0110_09335 [Cyanothece sp. CCY0110]
 gi|126617047|gb|EAZ87906.1| hypothetical protein CY0110_09335 [Cyanothece sp. CCY0110]
          Length = 226

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 24/140 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFE 79
           ++II+G+ + +L++LP KS+DLI  DPPY                  +   WD ++ + E
Sbjct: 5   NQIIQGDCLEILQELPDKSIDLIILDPPY---------------WKVIQQKWDYQWRTEE 49

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y  +   WL    RV+K +G+L++ G   N+F +   + +L F     I+  K   M  
Sbjct: 50  DYKQWCLQWLPEISRVIKLSGSLYLFGYLRNLFYLYEPIIDLGFNFRQQIIINKG--MKA 107

Query: 140 FRGR------RFQNAHETLI 153
             GR       F N  E+L+
Sbjct: 108 ISGRATKNYKMFPNVTESLL 127


>gi|108563097|ref|YP_627413.1| putative type II cytosine specific methyltransferase [Helicobacter
           pylori HPAG1]
 gi|107836870|gb|ABF84739.1| putative type II cytosine specific methyltransferase [Helicobacter
           pylori HPAG1]
          Length = 404

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 104/260 (40%), Gaps = 54/260 (20%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K  ++ G++   L K+   S++LIF  PPY    N ++Y                 S ++
Sbjct: 143 KPSLLIGDNAQTLNKIVPNSINLIFTSPPY---YNARIY-----------------SDYK 182

Query: 80  AYDAFTRAW---LLACRRVLKPNGTLWVIG----------------SYHNIFRIGTMLQN 120
            Y  +  A    L AC RVL+  G   +I                  Y   F    +L +
Sbjct: 183 NYKDYLNAMSQSLKACFRVLE-EGRFIIINVSPVITKRAGREFESVRYPIHFDFHQILID 241

Query: 121 LNFWILNDIVWRKSN-PMPNFRGRRFQN-----------AHETLIWASPSP--KAKGYTF 166
             F+ +++I+W K +  +PN  G   QN           +   L++   +P    K    
Sbjct: 242 NGFYFVDEILWIKPDFSVPNRIGGYLQNKKPLGYKPNCVSESLLVYRKKAPFLLDKNIKI 301

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
               LK + ++  +     +PI + +         K HP   PE+L  R+L   +   ++
Sbjct: 302 AEKRLKPSKQNNTLFGKKELPIETTNCWYITPKSSKDHPAVFPESLCERVLNYYSFENEV 361

Query: 227 ILDPFFGSGTSGAVAKKLRR 246
           + DPF GSGT G VAK + R
Sbjct: 362 VCDPFAGSGTFGMVAKSMGR 381


>gi|162457644|ref|YP_001620011.1| DNA methyltransferase [Sorangium cellulosum 'So ce 56']
 gi|161168226|emb|CAN99531.1| DNA methyltransferase [Sorangium cellulosum 'So ce 56']
          Length = 312

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 107/275 (38%), Gaps = 52/275 (18%)

Query: 23  IIKGNSISVLEKLPAK-SVDLIFADPPYNLQLN-----GQLYRPDHSLVDAVTDSWDKFS 76
           +  G++  V   LPA    DL++ DPP+ +         +         ++  D++D  +
Sbjct: 5   LAHGDAADVCAALPADVRFDLVYLDPPFGVGTTMTARAARGQARGRRRPESGPDAYDDRA 64

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKS 134
           S +A  A     L A R  +    TL++   +  +         L      L +I+W   
Sbjct: 65  SADALVAMLAPRLEAIRDRMTEGATLYLHLDHRAVHDAKVACDRLFGRGAFLGEIIWAPG 124

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA-----------------LKAANED 177
           N     RG  F   H+T++  + +   +G    Y+A                  K  +ED
Sbjct: 125 NGGRGARG--FSVTHQTILLYARAASERGQVV-YNAADPTLREPYAETSLAMHFKHRDED 181

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKL----------------------HPTQKPEALLSR 215
            ++  + ++     + R    +G +L                      +PTQKPE LL R
Sbjct: 182 GRLYRERIL--GGKAYRYYADEGRRLGSVWSDIPGMVANTPLRREATGYPTQKPERLLER 239

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           I+ +S+ PG  + D   GSGT+   A +L R F+G
Sbjct: 240 IVRASSAPGATVADLMCGSGTTLVAAARLGRRFVG 274


>gi|323967422|gb|EGB62843.1| DNA methylase [Escherichia coli M863]
          Length = 331

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 70/126 (55%), Gaps = 8/126 (6%)

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKL----HPTQKPEALLSRILVSSTKPGDIILDPFFG 233
           V +  D  +P+    ++ R+   + +    +PT+K   +L +I+ +ST  GD++LDPF G
Sbjct: 187 VYLTQDKKLPLTDYWDQFRDAHHQSIKITGYPTEKNFDMLKKIIAASTNVGDLVLDPFCG 246

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA-SVQPLGNIELTVLTGKRTEPRVA--- 289
           SGT+   A++L R ++GI+     I  + +R+   ++P+G+   +    K  + +++   
Sbjct: 247 SGTTLHAAQELDRKWLGIDQSFQAIITSIRRLKYGLEPMGDFVKSNAAEKSRQLKLSDRE 306

Query: 290 FNLLVE 295
           FN +V+
Sbjct: 307 FNFIVD 312


>gi|268599185|ref|ZP_06133352.1| LOW QUALITY PROTEIN: twin-arginine leader-binding protein DmsD
           [Neisseria gonorrhoeae MS11]
 gi|268583316|gb|EEZ47992.1| LOW QUALITY PROTEIN: twin-arginine leader-binding protein DmsD
           [Neisseria gonorrhoeae MS11]
          Length = 601

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 2/68 (2%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-I 260
           +L   +KPE+L+  I+  +T   DI+LD   GSGT+ AVA K+ R +IGIE + DYI+ +
Sbjct: 397 ELKNGKKPESLIETIIKLATNENDIVLDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIETL 455

Query: 261 ATKRIASV 268
           A +R+  V
Sbjct: 456 AVERMKKV 463


>gi|212702853|ref|ZP_03310981.1| hypothetical protein DESPIG_00885 [Desulfovibrio piger ATCC 29098]
 gi|212673715|gb|EEB34198.1| hypothetical protein DESPIG_00885 [Desulfovibrio piger ATCC 29098]
          Length = 454

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 114/259 (44%), Gaps = 54/259 (20%)

Query: 39  SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKP 98
             D+++ DPPYN+   G+  +  +   DA++D    F++F       R  +   R+    
Sbjct: 187 EADMVWTDPPYNVAYEGKAGKIKN---DAMSDQ--DFAAF--LQRVFRQMVTGVRK---- 235

Query: 99  NGTLWV----IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI- 153
            G ++V     G     FR   +   L   + + ++WRK++ + +     +Q  HE ++ 
Sbjct: 236 GGAVYVAHADAGVLGVTFRQAFIQAGLK--LASCLIWRKNSGVLSRADYHWQ--HEPILY 291

Query: 154 -WASPSPKA----KGYTFNYDALKAANEDVQMRSDWLIP---ICSGSERLRNKDGEKL-- 203
            W   +P      +  T   DA  AA     +R D  +P   I  G ER+    G+ +  
Sbjct: 292 GWRPGAPHVWFGDRKQTTVQDAFPAA-----VREDGDVPCWHIMDG-ERIVRISGKDVHV 345

Query: 204 ------------------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
                             HPT KP AL+ R+L +S+K G +ILDPF GSG++    ++  
Sbjct: 346 EVLAGSVFCEPKPQRNSHHPTMKPVALIERMLTNSSKRGGMILDPFGGSGSTLMACERQD 405

Query: 246 RSFIGIEMKQDYIDIATKR 264
           R    +E+   ++D+  +R
Sbjct: 406 RICRTMELDPRFVDVIIRR 424


>gi|59801068|ref|YP_207780.1| putative type III restriction/modification system modification
           methylase [Neisseria gonorrhoeae FA 1090]
 gi|59717963|gb|AAW89368.1| putative type III restriction/modification system modification
           methylase [Neisseria gonorrhoeae FA 1090]
          Length = 756

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 2/68 (2%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-I 260
           +L   +KPE+L+  I+  +T   DI+LD   GSGT+ AVA K+ R +IGIE + DYI+ +
Sbjct: 552 ELKNGKKPESLIETIIKLATNENDIVLDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIETL 610

Query: 261 ATKRIASV 268
           A +R+  V
Sbjct: 611 AVERMKKV 618


>gi|46578609|ref|YP_009417.1| adenine specific DNA methyltransferase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46448020|gb|AAS94676.1| adenine specific DNA methyltransferase, putative [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 452

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 113/277 (40%), Gaps = 54/277 (19%)

Query: 22  KIIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +++ G+S SV   +  +  +  D+++ DPPYN+  +G+  +  +          DK S  
Sbjct: 167 RLLCGDSTSVEDVVRLMAGEQADMLWTDPPYNVDYSGKAGKIRN----------DKMSP- 215

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYH---NIFRIGTMLQNLNFWILNDIVWRKSN 135
           E +DAF    L      L      +V  S       FR      +  + + + ++WRK  
Sbjct: 216 EDFDAFLLRLLSRSYEALADGAAAYVAHSEAGGGTAFR--KAFAHAGYKLASCLIWRKHQ 273

Query: 136 PMPNFRGRRFQNAHETLIWA-SPSPKAKGY----------TFNYDALKAANEDVQMRSDW 184
            +       +Q  HE +++   P+ K + Y           F    +  A E V     W
Sbjct: 274 LVLGRGDYHWQ--HEPILYGWKPTGKHRWYGNRKHTTLLEHFAGQTVLPAGEGV-----W 326

Query: 185 LIPICSGSERLRNKD-----------------GEKLHPTQKPEALLSRILVSSTKPGDII 227
            +        +R +D                   +LHPT KP AL+ R++ +S+  G ++
Sbjct: 327 QVATGDAVLLIRGQDVTVEEVSTSILAVAKPARSELHPTMKPVALVERMVANSSPRGGLV 386

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           LDP  GSGT+    +++ R    +E+   + D+  +R
Sbjct: 387 LDPCGGSGTTLIACERMGRRCNTMELDPRFADVIVRR 423


>gi|260577042|ref|ZP_05845021.1| ParB domain protein nuclease [Rhodobacter sp. SW2]
 gi|259020712|gb|EEW24029.1| ParB domain protein nuclease [Rhodobacter sp. SW2]
          Length = 419

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 42/69 (60%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +++D   +H TQKP   + R +++++ PG  + +PF GSGT+   A+   R   GIE+  
Sbjct: 323 KDQDAATVHGTQKPVECMRRPILNNSSPGQAVFEPFMGSGTTLIAAETTGRVCFGIELNP 382

Query: 256 DYIDIATKR 264
            Y+D+A +R
Sbjct: 383 VYVDVAIER 391


>gi|315173014|gb|EFU17031.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX1346]
          Length = 220

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 46/71 (64%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+HPTQKP  ++ R++   T  GD+++DP  GSG++   A +L R+  G E+K++  + +
Sbjct: 147 KIHPTQKPIPVIKRLIEIFTDYGDVVIDPCAGSGSTLRAAAELNRNAYGFEIKKEMYEAS 206

Query: 262 TKRIASVQPLG 272
            +++ S  P+G
Sbjct: 207 QEKMLSNIPMG 217


>gi|295092254|emb|CBK78361.1| Adenine specific DNA methylase Mod [Clostridium cf. saccharolyticum
           K10]
          Length = 673

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 43/73 (58%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           RN+ G  +   +KPE LL   L   +  GD+ILD F GSGT+ AVA K+ R +I  E   
Sbjct: 468 RNEGGVDIEGGKKPEQLLKFFLDYFSNEGDLILDFFGGSGTTAAVAHKMNRRYITCEQMD 527

Query: 256 DYIDIATKRIASV 268
           + I++   R++SV
Sbjct: 528 NQIEMIKSRLSSV 540


>gi|283956294|ref|ZP_06373774.1| site-specific DNA-methyltransferase [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283792014|gb|EFC30803.1| site-specific DNA-methyltransferase [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 250

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 38/62 (61%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+HPTQKP  LL R++   T  GD+++DP  GSG++   A  L R   G E+K+D+   A
Sbjct: 177 KVHPTQKPIKLLERLISIFTDAGDVVIDPCAGSGSTLLAATNLNRKAYGFEIKKDFFKSA 236

Query: 262 TK 263
            +
Sbjct: 237 NE 238


>gi|261347021|ref|ZP_05974665.1| type III restriction/modification enzyme, methylase subunit
           [Providencia rustigianii DSM 4541]
 gi|282564874|gb|EFB70409.1| type III restriction/modification enzyme, methylase subunit
           [Providencia rustigianii DSM 4541]
          Length = 648

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 44/63 (69%), Gaps = 2/63 (3%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRI 265
           +KPE LL RI+   +   DI+LD   GSGT+ AVA K++R++IGIE + DY + +A +R+
Sbjct: 454 KKPEMLLQRIISLFSDENDIVLDFHLGSGTTSAVAHKMKRNYIGIE-QMDYAETLAIRRL 512

Query: 266 ASV 268
            +V
Sbjct: 513 CNV 515


>gi|227505796|ref|ZP_03935845.1| site-specific DNA-methyltransferase [Corynebacterium striatum ATCC
           6940]
 gi|227197605|gb|EEI77653.1| site-specific DNA-methyltransferase [Corynebacterium striatum ATCC
           6940]
          Length = 266

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 37/56 (66%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K+HPTQKP AL+ R++   T P D+++DP  GSG +   A+ L R   G E+K+D+
Sbjct: 176 KVHPTQKPVALMERLIDLFTDPDDVVIDPCAGSGATLVAAENLGRKSYGFEIKKDF 231


>gi|166366294|ref|YP_001658567.1| site-specific DNA-methyltransferase [Microcystis aeruginosa
           NIES-843]
 gi|166088667|dbj|BAG03375.1| site-specific DNA-methyltransferase [Microcystis aeruginosa
           NIES-843]
          Length = 312

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 120/298 (40%), Gaps = 58/298 (19%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH------------SLVDAV- 68
           +++ G+   +L  L   S+  +  DPPYN +  G+ +  D             +LV  + 
Sbjct: 8   QLLHGDCRELLTLLEESSISCVITDPPYNYEFIGRNWDHDEIQRRRERIQNSSTLVKNIP 67

Query: 69  ----------TDSWDKFSSFEA--YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
                      + W + +      Y  +   W     RV K    + V  S   +  I  
Sbjct: 68  YGSGLAGGVRNERWYQRNRENVVNYIEWATDWSKELMRVCKSGAVVAVFSSTRTLAHIQI 127

Query: 117 MLQNLNFWILNDIVWRKSNPMP-------------NFRGRRFQNAHETLI--WASPSPKA 161
            L+N  F+  + +V+R+ + +P             +   +++Q  H  L   W +     
Sbjct: 128 ALENAGFYARDVLVYRRHSGIPKGLNIEKKLDKIGDTNAQQWQGWHTCLRNEWEAIVIVQ 187

Query: 162 KGYTFNY---------DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
           K    NY            KA   D   +S+    I  G  + R+++ ++ H T KP +L
Sbjct: 188 KPLKNNYIETLQMTGLGPFKAILSDGSFQSN----ILEGFSKGRDENFDE-HCTIKPLSL 242

Query: 213 LSRILVSSTKPGD---IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           + R L+    P D   I+LDPF G+GT+   A +L    IGIE++  YI+I  +R+  
Sbjct: 243 I-RKLLELFLPQDNSHIVLDPFAGTGTTLIAALELGYQTIGIEIEAQYINIIQQRLGE 299


>gi|147678479|ref|YP_001212694.1| DNA modification methylase [Pelotomaculum thermopropionicum SI]
 gi|146274576|dbj|BAF60325.1| DNA modification methylase [Pelotomaculum thermopropionicum SI]
          Length = 368

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPT KP  L++ +    T PG ++LDPF GSG++   A +   +FI IE + DY++IA  
Sbjct: 304 HPTVKPTGLMAWLCRLITPPGGLVLDPFAGSGSTAVAAIREGFNFIAIERESDYVEIAKS 363

Query: 264 RIASV 268
           R  + 
Sbjct: 364 RTTAA 368



 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 46/112 (41%), Gaps = 3/112 (2%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP-DHSLVDAVTDSWDKFSSFEAY 81
           I +G+S  VL+ LP  SVD +  DPPY L     +     H L D       K    + +
Sbjct: 8   ITQGDSYEVLKDLPENSVDAVVTDPPYGLSKEPDIVEVLTHWLDDQEYKHLSKGFMGKDW 67

Query: 82  DAFTRAWLL--ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           D+F  +  L     RVLKP G +           +   L+   F I + I W
Sbjct: 68  DSFVPSPSLWREVYRVLKPGGHVLCFAGTRTQDIMTIALRLAGFEIRDVIEW 119


>gi|313896438|ref|ZP_07829989.1| DNA (cytosine-5-)-methyltransferase [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312974862|gb|EFR40326.1| DNA (cytosine-5-)-methyltransferase [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 421

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 54/256 (21%), Positives = 108/256 (42%), Gaps = 47/256 (18%)

Query: 20  KDKIIKGNSI--SVLEKL-PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K ++I G+S      E+L  ++ V+L+  DPPY +QL     +  +          D  +
Sbjct: 169 KHRVICGDSTLPETYERLLGSEKVNLVCTDPPYMIQLESTSGKIKN----------DDLN 218

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             +AY+ F ++   A   V+  + +++V  +           ++  F +   +VW+K   
Sbjct: 219 DKDAYE-FLKSAFTAFHSVMATDASIYVFYATAKARIFHDAYEDAGFKVGAGLVWKKDRL 277

Query: 137 MPNFRGRRFQNAHETLIWA-SPSPKAKGY-------TFNYDALKAANEDVQMRSDWLIPI 188
           +      ++   HE +IW      + + Y        F +D +K + +D           
Sbjct: 278 VLTRTDWKY--IHEPIIWGWRKDGRHRWYGDQKQTTVFAFDRIKDSKKDG---------- 325

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
           C              HP+ KP  L++ ++   T+   I+LD F GS ++     +L R  
Sbjct: 326 CG-------------HPSSKPVPLIAYLVKQCTQTNGIVLDGFLGSASTLIACDQLGRIC 372

Query: 249 IGIEMKQDYIDIATKR 264
            G+E++  ++D+A +R
Sbjct: 373 YGVELEAKFVDVAVER 388


>gi|326783510|ref|YP_004323987.1| DNA adenine methylase [Synechococcus phage Syn19]
 gi|310005013|gb|ADO99403.1| DNA adenine methylase [Synechococcus phage Syn19]
          Length = 270

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 103/268 (38%), Gaps = 49/268 (18%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           + +  +++L   S+D I   PPYNL +    Y  +    + +  SW         D F  
Sbjct: 14  DCLEGMKELEDGSIDAIITSPPYNLNIKYGRYSDNKPRQEYL--SW-------LVDIFRE 64

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNI-----FRIGTMLQNLNFWIL-NDIVWRKS------ 134
           A     +R+L  +G L+V   Y NI       +G  L+    WIL N I W KS      
Sbjct: 65  A-----KRILADDGHLFVNMGYSNIDPWIGMEVGLALRED--WILQNHINWVKSIHVNGK 117

Query: 135 --NPMPNFRGRRF------------QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
                     +RF            ++ +  +   S   + + Y  N      A     +
Sbjct: 118 TSGHFKPINSKRFVCPTWEHLFHFTKDGNVEIDRLSVGVQYEYYEANIRGNNTAETKPNL 177

Query: 181 RSD---WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           R     W +P     E + +K+    HP   P  L    L  + K   I LDPF G+GT+
Sbjct: 178 RDKGNCWFVPY----ETINSKELRGKHPATFPVKLAEDCLKLTGKDTGIALDPFMGTGTT 233

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRI 265
              A+ L    IG ++ +DYI  A  R+
Sbjct: 234 AVAAQILGWDCIGYDIDEDYIKFANNRL 261


>gi|299142745|ref|ZP_07035874.1| DNA (cytosine-5-)-methyltransferase [Prevotella oris C735]
 gi|298575774|gb|EFI47651.1| DNA (cytosine-5-)-methyltransferase [Prevotella oris C735]
          Length = 399

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 98/242 (40%), Gaps = 31/242 (12%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
            ++  +  +  D+I  DPPYN+   G       S +    DS +     + +  F ++  
Sbjct: 162 DIVTLMNGRVADMILTDPPYNVNYEGG----GDSKLTIQNDSMEN----DLFLRFLQSVF 213

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNA 148
                ++K  G+ +V  +          ++   F I    +W K + +    GR+ +Q  
Sbjct: 214 NVMFSIVKAGGSFYVFHADSEGENFRRAIREAGFKIAQCCIWVKDSLV---MGRQDYQWQ 270

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
           HE  +          Y +   A    N D +  + W                 ++HPT K
Sbjct: 271 HEPCL----------YGWKPGAAHFWNSDRKQTTIW---------NFDKPKANRIHPTMK 311

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           P AL+   + +STK GDI++D F GSG++    ++  R   G+E+   Y+    +R  ++
Sbjct: 312 PIALMVYPITNSTKNGDIVVDVFSGSGSTIMACQQTDRIGYGMEIDPKYVSATVRRYMAM 371

Query: 269 QP 270
            P
Sbjct: 372 FP 373


>gi|188527466|ref|YP_001910153.1| putative type II cytosine specific methyltransferase [Helicobacter
           pylori Shi470]
 gi|188143706|gb|ACD48123.1| putative type II cytosine specific methyltransferase [Helicobacter
           pylori Shi470]
 gi|308062014|gb|ADO03902.1| putative type II cytosine specific methyltransferase [Helicobacter
           pylori Cuz20]
          Length = 404

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 104/260 (40%), Gaps = 54/260 (20%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K  ++ G++   L K+   S++LIF  PPY    N ++Y                 S ++
Sbjct: 143 KPSLLIGDNAQTLNKIVPNSINLIFTSPPY---YNARIY-----------------SDYK 182

Query: 80  AYDAFTRAW---LLACRRVLKPNGTLWVIG----------------SYHNIFRIGTMLQN 120
            Y  +  A    L AC RVL+  G   +I                  Y   F    +L +
Sbjct: 183 NYKDYLNAMSQSLKACFRVLE-EGRFIIINVSPVITKRAGREFESVRYPIHFDFHQILID 241

Query: 121 LNFWILNDIVWRKSN-PMPNFRGRRFQN-----------AHETLIWASPSP--KAKGYTF 166
             F+ +++I+W K +  +PN  G   QN           +   L++   +P    K    
Sbjct: 242 NGFYFVDEILWIKPDFSVPNRIGGYLQNKKPLGYKPNCVSESLLVYRKKAPFLLDKNIKI 301

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
               LK + ++  +     +PI + +         K HP   PE+L  R+L   +   ++
Sbjct: 302 AEKRLKPSKQNNTLFGKKELPIETTNCWYITPKSSKDHPAIFPESLCERVLNYYSFENEV 361

Query: 227 ILDPFFGSGTSGAVAKKLRR 246
           + DPF GSGT G VAK + R
Sbjct: 362 VCDPFAGSGTFGMVAKSMGR 381


>gi|86136192|ref|ZP_01054771.1| DNA methylase N-4/N-6 [Roseobacter sp. MED193]
 gi|85827066|gb|EAQ47262.1| DNA methylase N-4/N-6 [Roseobacter sp. MED193]
          Length = 410

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 41/69 (59%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +++D + +H TQKP   + R +++++ PG  + +PF GSGT+   A    R   GIE+  
Sbjct: 314 KDQDADTVHGTQKPVECMRRPILNNSSPGQAVYEPFMGSGTTLIAAATTGRVCYGIELNP 373

Query: 256 DYIDIATKR 264
            Y+D+A  R
Sbjct: 374 AYVDVAVAR 382


>gi|37527291|ref|NP_930635.1| hypothetical protein plu3417 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36786725|emb|CAE15791.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 185

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 41/63 (65%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  L++ I+ SS++ GD++ D F GSG++   A KL R  +G+E++++Y +   +
Sbjct: 120 HPCEKPADLMAHIIRSSSREGDLVADFFMGSGSTLKAALKLNRRVLGVELEEEYFNQTKR 179

Query: 264 RIA 266
            I 
Sbjct: 180 EIG 182


>gi|145640732|ref|ZP_01796315.1| type III restriction-modification system methyltransferase-like
           protein [Haemophilus influenzae R3021]
 gi|145274658|gb|EDK14521.1| type III restriction-modification system methyltransferase-like
           protein [Haemophilus influenzae 22.4-21]
          Length = 194

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 40/57 (70%), Gaps = 2/57 (3%)

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRIASV 268
           + RI+  +TK GDIILD   GSGT+ AVA K+ R +IGIE + DYI+ +A +R+  V
Sbjct: 1   MRRIIDMTTKEGDIILDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIETLAVERLKKV 56


>gi|222112352|ref|YP_002554616.1| DNA methylase n-4/n-6 domain-containing protein [Acidovorax ebreus
           TPSY]
 gi|221731796|gb|ACM34616.1| DNA methylase N-4/N-6 domain protein [Acidovorax ebreus TPSY]
          Length = 394

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 116/291 (39%), Gaps = 75/291 (25%)

Query: 22  KIIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           KI +G+S+  L  K+   SV+LI   PP+ L     + +  +   DA             
Sbjct: 78  KIYQGDSLEYLHHKVKPGSVNLIMTSPPFGL-----VRKKSYGNEDAAE----------- 121

Query: 81  YDAFTRAWLLACRRVLKPNGTL-------WVIGS-----YHNIFRIGTML-QNLNFWILN 127
           Y  + R +     RVLK +G+L       W  GS     YH  F++  ML +   F +  
Sbjct: 122 YCEWFRPFAEGFHRVLKDDGSLVIDIGGAWKSGSPTRSLYH--FKLLVMLCEEYGFHLAQ 179

Query: 128 DIVWRKSNPMP------NFRGRRFQNAHETLIWAS--PSPKA-------------KGYTF 166
           +  W     +P      N R  R ++A   + W S  P PKA             KG   
Sbjct: 180 EHYWWNPAKLPSPAEWVNVRRVRVKDAINCVWWLSKTPFPKASNKRVLAPYSDSMKGLLK 239

Query: 167 N-YDA-LKAANEDVQMRSDWLIPICSGS-----------------ERLRNKDGEKLHPTQ 207
           N Y A L+ +  D+   SD       GS                 +     +G  +HP +
Sbjct: 240 NGYTAKLRPSGHDI---SDKFSKDNGGSVPPNLLAIANTESNGVYQEYCRANGIDIHPAR 296

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            P  L    +   T PGD+++DPF GS  +G VA+ L R +  IE+  +YI
Sbjct: 297 FPALLPEYFIRFLTDPGDLVVDPFGGSCVTGMVAEALGRKWACIELSSEYI 347


>gi|257091062|ref|ZP_05585423.1| DNA modification methylase [Enterococcus faecalis CH188]
 gi|256999874|gb|EEU86394.1| DNA modification methylase [Enterococcus faecalis CH188]
          Length = 254

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 46/71 (64%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+HPTQKP  ++ R++   T  GD+++DP  GSG++   A +L R+  G E+K++  + +
Sbjct: 181 KIHPTQKPIPVIKRLIEIFTDYGDVVIDPCAGSGSTLRAAAELNRNAYGFEIKKEMYEAS 240

Query: 262 TKRIASVQPLG 272
            +++ S  P+G
Sbjct: 241 QEKMLSNIPMG 251


>gi|227498320|ref|ZP_03928470.1| methylase [Acidaminococcus sp. D21]
 gi|226903782|gb|EEH89700.1| methylase [Acidaminococcus sp. D21]
          Length = 412

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 100/242 (41%), Gaps = 50/242 (20%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           +  K  +L+  DPPYN+ +     +  +   D + D  DKF  F  + AF         +
Sbjct: 189 MDGKKANLVLTDPPYNVDVEETAGKIKN---DNMPD--DKFYQF-LFSAFVNM-----EQ 237

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNAHETLI 153
            ++ + +++V  +           ++  F++    +W+K+  +    GR  +Q  HE  +
Sbjct: 238 NMERDASIYVFHADTQGLNFRKAFKDAGFYLSGCCIWKKNALV---LGRSPYQWQHEPCL 294

Query: 154 WASP--------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
           +           S + +   + YD  KA+ E                           HP
Sbjct: 295 FGWKLNGKHQWYSDRKQTTIWEYDRPKASKE---------------------------HP 327

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T KP  L++  + +S+    I+LDPF GSG++    ++  R   GIE+ + ++D+  KR 
Sbjct: 328 TMKPVVLMAYPIENSSMSHCIVLDPFLGSGSTLMACQQTDRICYGIELDEKFVDVIVKRY 387

Query: 266 AS 267
            S
Sbjct: 388 IS 389


>gi|157364418|ref|YP_001471185.1| DNA methylase N-4/N-6 domain-containing protein [Thermotoga
           lettingae TMO]
 gi|157315022|gb|ABV34121.1| DNA methylase N-4/N-6 domain protein [Thermotoga lettingae TMO]
          Length = 412

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 126/321 (39%), Gaps = 60/321 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           KII G+S  + E +  +SVDLI   PPY    +  + GQ+     SL + + D +     
Sbjct: 6   KIIIGDSRKMPE-IDDESVDLIVTSPPYWHIKDYGIKGQI-GYGQSLHEYLKDLY----- 58

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWV-----------IGSYHNI---FRIGTMLQNLNF 123
                   R W   C RVLKP   L +            G Y  I     I    +++ F
Sbjct: 59  --------RVWN-ECFRVLKPGRRLCINIGDQFARSAIYGRYKIIPLHAEIVAQCEDIGF 109

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHE-------------TLIWASPSPKAKGYTFNYDA 170
             +  I+W+K   M    G     ++               LI+  P   +K      + 
Sbjct: 110 DYMGSIIWQKKTTMNTSGGANVMGSYPYPPNGMIEIDYEFILIFKKPGKSSKASADIKEK 169

Query: 171 LKAANEDVQ--MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
            K   E+ +      W      G++++        H    PE L  R++   T  GD +L
Sbjct: 170 SKLTKEEWKEYFYGHWYF---GGAKQIG-------HEAMFPEELPRRLIKMYTFVGDTVL 219

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
           DPF GSGT+  ++ ++ R+ IG E+   ++ +   +I S + L      V   KR E ++
Sbjct: 220 DPFLGSGTTAKMSLEIGRNAIGYEINDKFLTVIENKIESKKNLFQSNFNVEIIKR-EHKI 278

Query: 289 AFNLLVERGLIQPGQILTNAQ 309
             + +     I+  + L N Q
Sbjct: 279 NVDEINYTPTIKDAKPLINPQ 299


>gi|13542295|ref|NP_111983.1| adenine specific DNA methylase [Thermoplasma volcanium GSS1]
 gi|14325729|dbj|BAB60632.1| modification methylase [Thermoplasma volcanium GSS1]
          Length = 616

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 44/65 (67%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +PT+  E LL RI++S+T+ GD+I D F GSGT+ AVA+KL R +IG ++ +  +    K
Sbjct: 301 YPTENAEQLLERIILSATEKGDLIADFFSGSGTTVAVAEKLGRRWIGADIGRFSVHTIRK 360

Query: 264 RIASV 268
           R+  +
Sbjct: 361 RLLDI 365


>gi|313143630|ref|ZP_07805823.1| adenine-specific DNA methylase [Helicobacter cinaedi CCUG 18818]
 gi|313128661|gb|EFR46278.1| adenine-specific DNA methylase [Helicobacter cinaedi CCUG 18818]
          Length = 822

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 41/68 (60%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +KL  T KPE LL RI   ++    IILD F GSGTS A A+KL R ++GIEM + +  +
Sbjct: 566 DKLFDTPKPEKLLKRICEIASNQDSIILDFFAGSGTSLATAQKLGRKWLGIEMGEHFYKV 625

Query: 261 ATKRIASV 268
              R+  V
Sbjct: 626 IIPRLKKV 633


>gi|312173963|emb|CBX82217.1| putative DNA adenine methylase [Erwinia amylovora ATCC BAA-2158]
          Length = 130

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 36/53 (67%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           HP +KP  L+  I+ SST+PGD++ D F GSG +   A  L R+ IG+E++++
Sbjct: 68  HPCEKPAELMEHIITSSTRPGDVVADFFMGSGATVKAALTLGRTAIGVELEEE 120


>gi|261493911|ref|ZP_05990420.1| DNA methylase N-4/N-6 [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261310414|gb|EEY11608.1| DNA methylase N-4/N-6 [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 490

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 35/48 (72%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           KPE L+  +L +ST+P D++LD F GSGT+ AVA K  R +IGIE+ +
Sbjct: 350 KPEKLIQFVLEASTEPYDLVLDSFLGSGTTAAVAHKTNRRYIGIEIGE 397


>gi|145978|gb|AAA23784.1| 'ORF2' [Escherichia coli]
          Length = 100

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 22/93 (23%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+ +PA+SVDLIFADPPYN+  N           D + ++W +       D
Sbjct: 17  IIHGDALAELKNIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE-------D 59

Query: 83  AFTRAWLL----ACRRVLKPNGTLWVIGSYHNI 111
            F   WL      C RVLK  G+++++ S  N+
Sbjct: 60  LFID-WLFEVIAECHRVLKKQGSMYIMNSTENM 91


>gi|88811354|ref|ZP_01126609.1| adenine specific DNA-methyltransferase [Nitrococcus mobilis Nb-231]
 gi|88791243|gb|EAR22355.1| adenine specific DNA-methyltransferase [Nitrococcus mobilis Nb-231]
          Length = 460

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 41/66 (62%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           + TQKPE +L RI+   T  GD++ D F GSGT+ AVA+KL R +I  ++ +  I    K
Sbjct: 51  YATQKPEEMLERIIKLGTNGGDLVADFFAGSGTTAAVAEKLGRKWIATDLGKFAIHTTRK 110

Query: 264 RIASVQ 269
           R+  VQ
Sbjct: 111 RLIGVQ 116


>gi|224437165|ref|ZP_03658146.1| type III restriction-modification system methylation subunit
           [Helicobacter cinaedi CCUG 18818]
          Length = 1032

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 41/68 (60%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +KL  T KPE LL RI   ++    IILD F GSGTS A A+KL R ++GIEM + +  +
Sbjct: 776 DKLFDTPKPEKLLKRICEIASNQDSIILDFFAGSGTSLATAQKLGRKWLGIEMGEHFYKV 835

Query: 261 ATKRIASV 268
              R+  V
Sbjct: 836 IIPRLKKV 843


>gi|261496854|ref|ZP_05993223.1| DNA methylase N-4/N-6 [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261307471|gb|EEY08805.1| DNA methylase N-4/N-6 [Mannheimia haemolytica serotype A2 str.
           OVINE]
          Length = 411

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 35/48 (72%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           KPE L+  +L +ST+P D++LD F GSGT+ AVA K  R +IGIE+ +
Sbjct: 271 KPEKLIQFVLEASTEPYDLVLDSFLGSGTTAAVAHKTNRRYIGIEIGE 318


>gi|259505603|ref|ZP_05748505.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259166814|gb|EEW51368.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 363

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 25/146 (17%)

Query: 14  NSIFEWKDK---IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
            S  +W D+   +  G+S+ ++++LP  SV LI  DPPY+        + ++ L D    
Sbjct: 16  KSAAKWADEEAIVTHGDSLQLMKRLPDNSVSLILTDPPYHST------KKENILGD---- 65

Query: 71  SWDKFSSFEAYDAFTRAWLLAC----RRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                ++F   D F  AW++ C    +RVL+PNGTL+V  S     R+   L    F  +
Sbjct: 66  -----TAFGEDDDFI-AWMVECAKEWKRVLRPNGTLYVFCSSEMSARLEVNLAQF-FRPI 118

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETL 152
             I W K N +P + G + +   E L
Sbjct: 119 GHITWSKPN-LPGYDGWKGKMKKEAL 143



 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP ALL  I+ +S+ PGD++LD F GSG++   A    R  I +E++  +++   +
Sbjct: 271 HPAEKPVALLRHIIAASSYPGDVVLDSFAGSGSTAVAAITEGRRAITMELEDKWVE---R 327

Query: 264 RIASVQ 269
            I SVQ
Sbjct: 328 TIHSVQ 333


>gi|237751381|ref|ZP_04581861.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
 gi|229372747|gb|EEO23138.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
          Length = 376

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 104/269 (38%), Gaps = 57/269 (21%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K  ++ G++   L K+    + LIF  PPY    N ++Y                + S++
Sbjct: 126 KPSLLIGDNRLSLNKIKDNQISLIFTSPPY---YNARIY--------------SDYVSYK 168

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIG----------------SYHNIFRIGTMLQNLNF 123
           AY    +  L  C R+L+ +G   +I                  Y   F    +L    F
Sbjct: 169 AYLKAMQETLKQCYRILE-DGRFIIINVSPVITKRAGREFESIRYPIHFDFHQILCESGF 227

Query: 124 WILNDIVWRKSN-PMPNFRGRRFQN-----------AHETLIWASPSPKAKGYTF-NYDA 170
           + +++I+W K    +PN      Q            +   +++   SP        NYD 
Sbjct: 228 YFIDEILWIKPEYSVPNRVAGYLQTKMPLSYKPNCISESLMVYRKNSPFLLDKNIKNYDK 287

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
               ++++   + W I          +   +K HP   PE L  R+L   +  GD++ DP
Sbjct: 288 SLKNDDELDSTNCWYI----------SPKADKNHPAVFPEELCKRVLKYYSFKGDVVCDP 337

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           F GSGT G VA+ + R  +  E  + Y +
Sbjct: 338 FAGSGTFGRVARSMGRIPLLCEANESYAE 366


>gi|312623436|ref|YP_004025049.1| DNA methylase N-4/N-6 domain-containing protein
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203903|gb|ADQ47230.1| DNA methylase N-4/N-6 domain protein [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 412

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 141/348 (40%), Gaps = 67/348 (19%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G+S ++ E +  +++DLI   PPY        +  D+ + + +       +  E  
Sbjct: 5   KIIIGDSRNMSE-IDNETIDLIITSPPY-------WHLKDYGVANQIGYGQ---TLHEYL 53

Query: 82  DAFTRAWLLACRRVLKPNGTLW-----------VIGSYHNI---FRIGTMLQNLNFWILN 127
               R W   C RVLK    L            V G Y  I     I    +++ F  + 
Sbjct: 54  KDLYRVWQ-ECFRVLKEGRRLCINIGDQFARSIVYGRYKIIPLHSEIIAQCEDIGFDYMG 112

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL--------------KA 173
            I+W+K   M    G     ++       P P       +Y+ +              + 
Sbjct: 113 AIIWQKKTTMNTSGGANVMGSY-------PYPPNGMIEIDYEFILIFKKHGKSPKVSPEI 165

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKL--HPTQKPEALLSRILVSSTKPGDIILDPF 231
             + V  + +W     SG    +   GEK   H    P+ L  R++   +  GD +LDPF
Sbjct: 166 KEKSVLTKEEWK-EYFSGHWYFK---GEKQTEHEAMFPDELPYRLIKMFSFVGDTVLDPF 221

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP--LGNIELT-------VLTGK 282
            GSGT+  VA +L R+ IG E+  D++++  K++ ++    L  IE          +   
Sbjct: 222 LGSGTTLKVALELERNGIGYEINPDFLEVINKKLNTINNSFLYKIETIKKETETPEIKAV 281

Query: 283 RTEPRVA-FNLLVERGLIQPGQILTNAQGNISATVCADGT-LISGTEL 328
           + EPR+   + +++  +I+P +   N    +S  V AD   L SG E+
Sbjct: 282 KYEPRIKDASPIIDPKIIEPKK---NQYFKVSEIVSADTVKLNSGLEV 326


>gi|134297342|ref|YP_001121077.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134140499|gb|ABO56242.1| DNA methylase N-4/N-6 domain protein [Burkholderia vietnamiensis
           G4]
          Length = 420

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 40/62 (64%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           LHPT KP  L+ R + +S++PGD++LD F GSG++   A+K  R    +E++  Y D+  
Sbjct: 331 LHPTMKPVELMERSIRNSSRPGDVVLDCFGGSGSTLIAAEKSGRRCFMMELEPKYCDVIV 390

Query: 263 KR 264
           +R
Sbjct: 391 RR 392


>gi|302344011|ref|YP_003808540.1| ParB domain protein nuclease [Desulfarculus baarsii DSM 2075]
 gi|301640624|gb|ADK85946.1| ParB domain protein nuclease [Desulfarculus baarsii DSM 2075]
          Length = 472

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 41/76 (53%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           E  HP   P AL    +++ T P D+  +PF GSGTS   A+K  R    IE+  +Y DI
Sbjct: 371 ETGHPAVFPVALPEHFMLAFTDPEDVCFEPFSGSGTSLVAAQKTGRICQAIELAPEYCDI 430

Query: 261 ATKRIASVQPLGNIEL 276
           A +R A + P  +I L
Sbjct: 431 AIRRFAGLFPQESITL 446


>gi|57505368|ref|ZP_00371297.1| m4C-methyltransferase, putative [Campylobacter upsaliensis RM3195]
 gi|57016504|gb|EAL53289.1| m4C-methyltransferase, putative [Campylobacter upsaliensis RM3195]
          Length = 387

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 104/267 (38%), Gaps = 57/267 (21%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K  ++ G++ S L K+    ++ IF  PPY    N ++Y                + S++
Sbjct: 137 KPSLLIGDNRSSLNKIRDNQINFIFTSPPY---YNARIY--------------SDYVSYK 179

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIG----------------SYHNIFRIGTMLQNLNF 123
           AY    +  L  C R+L+ +G   +I                  Y   F    +L    F
Sbjct: 180 AYLKAMQETLKQCYRILE-DGRFIIINVSPVITKRAGREFESIRYPIHFDFHQILCESGF 238

Query: 124 WILNDIVWRKSN-PMPNFRGRRFQN-----------AHETLIWASPSPKAKGYTF-NYDA 170
           + +++I+W K    +PN      Q            +   +++   SP        NYD 
Sbjct: 239 YFVDEILWIKPEYSVPNRVAGYLQTKMPLSYKPNCISESLMVYRKNSPFLLDKNIKNYDK 298

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
               ++++   + W I          +   +K HP   PE L  R+L   +  GD++ DP
Sbjct: 299 NLRNDDELDSTNCWHI----------SPKADKNHPAVFPEELCKRVLKYYSFKGDVVCDP 348

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           F GSGT G VA+ + R  +  E  + Y
Sbjct: 349 FAGSGTFGRVARSMGRIPLLCEANEKY 375


>gi|260843063|ref|YP_003220841.1| putative methyltransferase [Escherichia coli O103:H2 str. 12009]
 gi|260866987|ref|YP_003233389.1| putative methyltransferase [Escherichia coli O111:H- str. 11128]
 gi|257758210|dbj|BAI29707.1| predicted methyltransferase [Escherichia coli O103:H2 str. 12009]
 gi|257763343|dbj|BAI34838.1| predicted methyltransferase [Escherichia coli O111:H- str. 11128]
          Length = 438

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 70/126 (55%), Gaps = 8/126 (6%)

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKL----HPTQKPEALLSRILVSSTKPGDIILDPFFG 233
           V +  D  +P+    ++ R+   + +    +PT+K   +L +I+ +ST  GD++LDPF G
Sbjct: 294 VYLTQDKKLPLTDYWDQFRDAHHQSIKITGYPTEKNFDMLKKIIAASTNVGDLVLDPFCG 353

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA-SVQPLGNIELTVLTGKRTEPRVA--- 289
           SGT+   A++L R ++GI+     I  + +R+   ++P+G+   +    K  + +++   
Sbjct: 354 SGTTLHAAQELDRKWLGIDQSFQAIITSIRRLKYGLEPMGDFVKSNAAEKSRQLKLSDRE 413

Query: 290 FNLLVE 295
           FN +V+
Sbjct: 414 FNFIVD 419


>gi|115289030|gb|ABI85522.1| M.Hin1056ModP-2 [Haemophilus influenzae]
 gi|115289087|gb|ABI85561.1| M-Hin86orf1056P-2 [Haemophilus influenzae]
          Length = 717

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 44/63 (69%), Gaps = 2/63 (3%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRI 265
           +K E L+S+I+ ++T   DI+LD   GSGT+ AVA K+ R +IGIE + DYI+ +A +R+
Sbjct: 518 KKGERLISQIIKTATNENDIVLDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIETLAVERL 576

Query: 266 ASV 268
             V
Sbjct: 577 KKV 579


>gi|163758317|ref|ZP_02165405.1| DNA methylase N-4/N-6 [Hoeflea phototrophica DFL-43]
 gi|162284606|gb|EDQ34889.1| DNA methylase N-4/N-6 [Hoeflea phototrophica DFL-43]
          Length = 456

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 102/258 (39%), Gaps = 26/258 (10%)

Query: 37  AKSVDLIFADPPYNLQLNGQ---LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
            K   L+F DPPYN+ ++G    L R  H      +   D+ +    + AF +  L A  
Sbjct: 176 GKPAALLFTDPPYNVAIDGHVSGLGRIKHREFALASGEMDETT----FAAFLKESLGAAA 231

Query: 94  RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
             LK     +V   + ++  +      +   + N  VW K+N      G  +++ HE + 
Sbjct: 232 SQLKDGAIAYVCMDWRHMRELLEAGHAVFDELKNLCVWNKTN---GGMGSFYRSKHELVF 288

Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE-KLHPTQKPEAL 212
                  A    F          +V     W  P  S      N+D E  +HPT K  AL
Sbjct: 289 VFKKGTAAHINNFGLGDTGRYRTNV-----WDYPGISSLGA--NRDEELAMHPTVKSVAL 341

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
           ++  +   +K GD +LD F GSG++   A +  R+   IE+   Y D   +R   +    
Sbjct: 342 IADAIRDCSKRGDTVLDVFGGSGSTLIAADQCGRAARLIEIDPLYCDTIIRRFERI---- 397

Query: 273 NIELTVLTGKRTEPRVAF 290
               T    + TE R +F
Sbjct: 398 ----TGEPARLTETRTSF 411


>gi|189499109|ref|YP_001958579.1| DNA methylase N-4/N-6 domain-containing protein [Chlorobium
           phaeobacteroides BS1]
 gi|189494550|gb|ACE03098.1| DNA methylase N-4/N-6 domain protein [Chlorobium phaeobacteroides
           BS1]
          Length = 315

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 38/64 (59%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           + HP   PE L+ R++   +  GD +LDPF G+GT+   A K  R+ IG+E+   Y  +A
Sbjct: 232 RTHPAPYPEGLVERLIRMFSFVGDTVLDPFMGTGTTTVAAAKWGRNSIGVEIDPHYYAMA 291

Query: 262 TKRI 265
            KRI
Sbjct: 292 EKRI 295


>gi|154504827|ref|ZP_02041565.1| hypothetical protein RUMGNA_02337 [Ruminococcus gnavus ATCC 29149]
 gi|153794710|gb|EDN77130.1| hypothetical protein RUMGNA_02337 [Ruminococcus gnavus ATCC 29149]
          Length = 418

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 108/250 (43%), Gaps = 39/250 (15%)

Query: 20  KDKIIKGNSI--SVLEKL-PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K ++I G+SI     E+L   +  +L+  DPPYN+ +     +  +   D + D      
Sbjct: 165 KHRVICGDSILPETYERLMDGRKANLVLTDPPYNVNVEETAGKIKN---DNMPD------ 215

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E +  F  A  +   + ++ + +++V  +           ++  F++    +W+K+  
Sbjct: 216 --EDFYKFLFAAFVNMEQSMEQDASIYVFHADTEGLNFRKAFKDAGFYLSGCCIWKKNAL 273

Query: 137 MPNFRGRR-FQNAHETLIWA-SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           +    GR  +Q  HE  ++      K + Y+           D +  + W        E 
Sbjct: 274 V---LGRSPYQWQHEPCLFGWKKGGKHQWYS-----------DRKQTTIW--------EY 311

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            R K   K HPT KP AL++  + +S     I+LDPF GSG++    ++  R   GIE+ 
Sbjct: 312 DRPK-ASKDHPTMKPVALMAYPIQNSCMSNCIVLDPFLGSGSTLIACEQTHRICYGIELD 370

Query: 255 QDYIDIATKR 264
           + ++D+   R
Sbjct: 371 EKFVDVIVNR 380


>gi|323357538|ref|YP_004223934.1| DNA modification methylase [Microbacterium testaceum StLB037]
 gi|323273909|dbj|BAJ74054.1| DNA modification methylase [Microbacterium testaceum StLB037]
          Length = 464

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 72/168 (42%), Gaps = 34/168 (20%)

Query: 124 WILND-IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY--DALKAANEDVQ- 179
           W L D IVWRK    P     R +N  E +++       KG +F Y  D L+    D++ 
Sbjct: 136 WTLRDTIVWRKDRTRPWASKGRLRNGFEYVLYF-----VKGSSFKYHVDRLR----DIRG 186

Query: 180 MRSDWL------------------IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
           MRS W+                  IPI        N   +  H    P  L+ RI+  ST
Sbjct: 187 MRSWWVKYPERHNPWGMTPDNVWDIPIPVQGSWASN---DLRHACPFPPELVKRIVSLST 243

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            PGD++ DPF GSG   AV++   R  +G E+  ++  I  + +   Q
Sbjct: 244 DPGDVVFDPFSGSGMVAAVSEAEGRRPLGTELNPEFCRIYEQHVRPTQ 291


>gi|25028049|ref|NP_738103.1| hypothetical protein CE1493 [Corynebacterium efficiens YS-314]
 gi|23493333|dbj|BAC18303.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 370

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 25/146 (17%)

Query: 14  NSIFEWKDK---IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
            S  +W D+   +  G+S+ ++++LP  SV LI  DPPY+        + ++ L D    
Sbjct: 23  KSAAKWADEEAIVTHGDSLQLMKRLPDNSVSLILTDPPYHST------KKENILGD---- 72

Query: 71  SWDKFSSFEAYDAFTRAWLLAC----RRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                ++F   D F  AW++ C    +RVL+PNGTL+V  S     R+   L    F  +
Sbjct: 73  -----TAFGEDDDFI-AWMVECAKEWKRVLRPNGTLYVFCSSEMSARLEVNLAQF-FRPI 125

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETL 152
             I W K N +P + G + +   E L
Sbjct: 126 GHITWSKPN-LPGYDGWKGKMKKEAL 150



 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP ALL  I+ +S+ PGD++LD F GSG++   A    R  I +E++  +++   +
Sbjct: 278 HPAEKPVALLRHIIAASSYPGDVVLDSFAGSGSTAVAAITEGRRAITMELEDKWVE---R 334

Query: 264 RIASVQ 269
            I SVQ
Sbjct: 335 TIHSVQ 340


>gi|228969725|ref|ZP_04130502.1| DNA methylase N-4/N-6 domain protein [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228789984|gb|EEM37789.1| DNA methylase N-4/N-6 domain protein [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 241

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 100/256 (39%), Gaps = 53/256 (20%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           ++ +P KSVD+I  D PY                   +  WD+   FE        W   
Sbjct: 7   MKMIPDKSVDMILCDLPYG----------------TTSCRWDEIIPFEP------LWE-Q 43

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK---SNPMPNFRGRRFQNA 148
             RV+K NG + +  S    F    +  N+  +   + +W+K   +   PN      +N 
Sbjct: 44  YERVIKDNGAILLTAS--QPFTTKLIASNIKLFRY-EWIWKKGKHTTGFPNANRMPLKNH 100

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS--GSERLRN--------- 197
              L++    PK     +    L   ++ +Q +    + I     +E L           
Sbjct: 101 ENVLVFYKKLPK-----YYPQDLILLDKPIQKKEIKRMKIFGKRNNESLNKLHVKKYTNY 155

Query: 198 --------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
                   ++ +  HPTQKP AL   ++ + TK G+ +LD   GS T+        R++I
Sbjct: 156 PKSIIDFPRESKTFHPTQKPVALFEYLIKTYTKEGETVLDNCMGSFTTAIACINTNRNYI 215

Query: 250 GIEMKQDYIDIATKRI 265
           G EM ++Y  +  +R+
Sbjct: 216 GFEMDEEYWKLGNERV 231


>gi|330465121|ref|YP_004402864.1| hypothetical protein VAB18032_05690 [Verrucosispora maris
           AB-18-032]
 gi|328808092|gb|AEB42264.1| hypothetical protein VAB18032_05690 [Verrucosispora maris
           AB-18-032]
          Length = 125

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  LLS ++ +S+ PGDI+LD F GSG++G  A +  R  + +E+++ +   A K
Sbjct: 35  HPAEKPLDLLSHMISASSYPGDIVLDCFAGSGSTGVAALRAGRRAVCMEIEEQWCSRAGK 94

Query: 264 RIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            +A+ +   ++  T     +  P V F+ L +
Sbjct: 95  ELAAAEKGVDLTTTREHHMKKSP-VVFDSLFD 125


>gi|319897460|ref|YP_004135657.1| type iii restriction-modification system hindvip enzyme mod
           [Haemophilus influenzae F3031]
 gi|317432966|emb|CBY81333.1| putative type III restriction-modification system HindVIP enzyme
           mod [Haemophilus influenzae F3031]
          Length = 723

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 2/78 (2%)

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           + +L ++ G +    +KPE ++  IL  +T   DI+LD   GSGT+ AVA K+ R +IGI
Sbjct: 509 TSKLFSEGGVEFSNGKKPELIIKTILNLATNENDIVLDYHLGSGTTAAVAHKMNRQYIGI 568

Query: 252 EMKQDYID-IATKRIASV 268
           E + DYI+ +A +R+  V
Sbjct: 569 E-QMDYIETLAVERLKKV 585


>gi|262201401|ref|YP_003272609.1| DNA methylase N-4/N-6 domain-containing protein [Gordonia
           bronchialis DSM 43247]
 gi|262084748|gb|ACY20716.1| DNA methylase N-4/N-6 domain protein [Gordonia bronchialis DSM
           43247]
          Length = 345

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 38/173 (21%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKF 75
           +++I+ G++++ L++LP  S+D + A PPY    +   +GQL    H  VD   D+    
Sbjct: 8   RNRIVIGDALTRLQELPDSSIDCVVASPPYFRLRDYNADGQLGLESH--VDQCVDNLAAI 65

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWV-IGSYHNIF---------------RIGTMLQ 119
           S                 R+L P GT W+ +G  ++                 R+   L 
Sbjct: 66  SEQAG-------------RILVPTGTFWLNVGDTYSGHASQGAARKSLLMAPERLALRLH 112

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
           +  + I N IVW K NP+P+    R    +E +   +  P    Y F+ DA++
Sbjct: 113 HDGWLIRNKIVWAKPNPVPSSVRDRLNCTYEVIYVLARQPH---YFFDLDAIR 162



 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           +PG ++LDPF GSGT+   A+ L+R + GIE+  D+   A  RIA+ +
Sbjct: 286 EPG-LVLDPFMGSGTTAIAAENLKRDWYGIELNPDFAAAARDRIATAR 332


>gi|168183994|ref|ZP_02618658.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum Bf]
 gi|237794621|ref|YP_002862173.1| DNA methylase [Clostridium botulinum Ba4 str. 657]
 gi|182672994|gb|EDT84955.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum Bf]
 gi|229262760|gb|ACQ53793.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum Ba4 str.
           657]
          Length = 268

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 51/87 (58%)

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           +R   K+  K+HPTQKP ALL +++   T  GD+++DP  GSG++     +L RS  G E
Sbjct: 182 KRDSKKEYPKVHPTQKPIALLKQLIEIFTDEGDVVIDPVAGSGSTLRACMELNRSSYGFE 241

Query: 253 MKQDYIDIATKRIASVQPLGNIELTVL 279
           + +++   A +++      G  +L+++
Sbjct: 242 VSKEFYKKAQEQMLIKNKTGCEQLSIV 268


>gi|156744102|ref|YP_001434231.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156235430|gb|ABU60213.1| DNA methylase N-4/N-6 domain protein [Roseiflexus castenholzii DSM
           13941]
          Length = 370

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 72/167 (43%), Gaps = 38/167 (22%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           ++ G++ +VLE+LP  S+D++   PPY         G     DH                
Sbjct: 42  LLLGDAQTVLEQLPEASIDMVMTSPPYWGKREYDDGGIGMEDDHR--------------- 86

Query: 79  EAYDAFTRAWLLAC---RRVLKPNGTLWV-IG-SYHNI------FRIGTMLQNLNFWIL- 126
                + R     C   +RVLKP G+ W+ +G +YH++      +R+   L +   WIL 
Sbjct: 87  ----EYIRHLTQICSLIKRVLKPEGSFWLNLGDTYHHMHLLGIPWRVALALTDHQGWILR 142

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
           N ++W K     +    R  N HE L      PK   Y +N DA+++
Sbjct: 143 NSVIWNKVKSGMDTAKNRLGNVHEYLFHFVKQPK---YYYNVDAIRS 186



 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 1/57 (1%)

Query: 213 LSRILVSSTKPG-DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           L RI + ST P   ++LDPF G+GT+   A+ L R  IGI++ Q Y++IA +R  ++
Sbjct: 313 LCRIPILSTCPEYGVVLDPFCGTGTTLLAARDLGRRSIGIDISQSYLEIALQRCQTL 369


>gi|312114244|ref|YP_004011840.1| DNA methylase N-4/N-6 domain protein [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219373|gb|ADP70741.1| DNA methylase N-4/N-6 domain protein [Rhodomicrobium vannielii ATCC
           17100]
          Length = 271

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 91/234 (38%), Gaps = 30/234 (12%)

Query: 41  DLIFADPPYNLQLNGQLYR---PDHSLVDAVTDSWDKFSSFEAYDA-----FTRAWLLAC 92
           D +  DPPY+   + Q  R   P        T   D     +  D      +   W+  C
Sbjct: 52  DAVITDPPYSSGGSTQAARNQAPSKKYRFTGTKKTDPDFGGDNRDQRSLTLWCSDWMAEC 111

Query: 93  RRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV-WRKSNPMPNFRGRRFQNAHET 151
            R  +  G L     + N+  I    Q +  W+   IV W K+      +G  F+   E 
Sbjct: 112 LRATRQGGALMCFIDWRNLPAIIDACQ-VGGWVYRGIVPWDKTEAARPNKGW-FRTQVEY 169

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           ++ A+  P  +          A+   +        P+ +          +K H T KP  
Sbjct: 170 IVTATAGPITR---------DASAPGIYQTGYIRTPVIAK---------DKHHITGKPVT 211

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           L+  +L +     ++ LDPF GSGT+G    K+ R F GIE +  Y DIA +RI
Sbjct: 212 LMQELLRTRDDWQNV-LDPFMGSGTTGVACVKMGRVFTGIEFEPRYFDIACRRI 264


>gi|284097522|ref|ZP_06385599.1| DNA modification methylase [Candidatus Poribacteria sp. WGA-A3]
 gi|283830966|gb|EFC34999.1| DNA modification methylase [Candidatus Poribacteria sp. WGA-A3]
          Length = 170

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 39/62 (62%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP   PE L    ++S + PGD++ DPF GSGT   +A+   R+F+G E+  +Y +IA +
Sbjct: 94  HPAIFPEQLAQDHILSWSNPGDLVYDPFLGSGTVALMAEMNSRNFVGSEINANYCEIARE 153

Query: 264 RI 265
           R+
Sbjct: 154 RL 155


>gi|193214766|ref|YP_001995965.1| DNA binding domain-containing protein [Chloroherpeton thalassium
           ATCC 35110]
 gi|193088243|gb|ACF13518.1| DNA binding domain protein, excisionase family [Chloroherpeton
           thalassium ATCC 35110]
          Length = 352

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 109/274 (39%), Gaps = 44/274 (16%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQLNGQLY--RPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
           S LE+L   S+ L+   PPY    N +LY   P    +  + D  D FS           
Sbjct: 92  SSLEELADDSIHLMVTSPPY---FNAKLYAAEPISGDLGDIHDIDDWFSKI------GHV 142

Query: 88  WLLACRRVLKPNGTLWV----------IGSYHNIFRIGTML---QNLNFWILNDIVWRKS 134
           W     RVL+P    ++           G Y  +  +G  +   + + F    DIVW K+
Sbjct: 143 WQ-EVFRVLQPGRKAFINIMNLPISLEDGKYRTLNLVGRTIDVCEAIGFTFKRDIVWHKT 201

Query: 135 NPM-------PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
           N +       P   G    N HE  I     P+ +G        K   E  ++  ++ + 
Sbjct: 202 NAVRAHFGTYPYPGGILINNMHE-FILEFDKPERRGARKYAHVTKDQREASKLDKEFWLS 260

Query: 188 ICSGSERLRNKDGE---KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           I      +   +G    + H    P  L  RI+ + +  G+ ILDPF GSGT+   A  L
Sbjct: 261 IKKSDVWVMAPEGSGNNRSHVAPFPYELPMRIIKAFSYVGERILDPFVGSGTTLCAAADL 320

Query: 245 RRSFIGIEMKQDYIDIATKRIASV-----QPLGN 273
           RR+  G E+     +IATK +  +     +P GN
Sbjct: 321 RRNSFGYEINP---EIATKTLHHLATRFAEPPGN 351


>gi|259908710|ref|YP_002649066.1| Phage DNA adenine-methylase [Erwinia pyrifoliae Ep1/96]
 gi|224964332|emb|CAX55841.1| Phage DNA adenine-methylase [Erwinia pyrifoliae Ep1/96]
 gi|283478684|emb|CAY74600.1| putative phage DNA methylase [Erwinia pyrifoliae DSM 12163]
          Length = 352

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 36/53 (67%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           HP +KP  L+  I+ SS++PGD++ D F GSG +   A K  RS IG+E++++
Sbjct: 290 HPCEKPAELMEHIITSSSRPGDVVADFFMGSGATVKAALKHGRSAIGVELEEE 342



 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 19/116 (16%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +++  +S+  ++ LP  SVDLI  DPPY        YR  +   D     WD  + + A+
Sbjct: 11  ELVNADSLVYIKTLPDNSVDLIATDPPY--------YRVKNCAWD---RQWDTVTDYLAW 59

Query: 82  -DAFTRAWLLACRRVLKPNGTLWVI-GSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            D F    L    RVLKP+G+L++  GS   +     +L      +L+ I W K +
Sbjct: 60  LDEF----LAEFWRVLKPSGSLYLFCGS--KLAADTEILVRQRMQVLSAITWAKPH 109


>gi|206602570|gb|EDZ39051.1| DNA methyltransferase [Leptospirillum sp. Group II '5-way CG']
          Length = 350

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 101/265 (38%), Gaps = 47/265 (17%)

Query: 31  VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
           +L+     SV L+   PPY      + YR     + A+TD  D  +  +      + W  
Sbjct: 83  LLDSFVPNSVHLVLTSPPY---WTLKKYREHSKQLGAITDYRDFLNELD------KVWR- 132

Query: 91  ACRRVLKPNGTLWVI-----------GSYHNIFRIGTMLQN----LNFWILNDIVWRK-- 133
           AC +VL P G L  +           G  H +  +   +Q     + +  L+ IVW K  
Sbjct: 133 ACYQVLVPGGRLVCVVGDVCLSRRKNGGEHTVVPLHASIQERCRAIGYANLSPIVWNKIA 192

Query: 134 ------SNPMPNFRGRRFQ------NAHETLIWASPSPKAKGYTFNYDALKAANE-DVQM 180
                       F G+ ++      N  E ++      K  GY     A +  +      
Sbjct: 193 NAKYEAEGNGGGFLGKPYEPNSVIKNDIEFILMQR---KMGGYRSPSVATRILSVIPANR 249

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
             DW   I  G      +     HP   P  L  R++   +  GD +LDPF G+GT+   
Sbjct: 250 HKDWFQQIWMGVTGASTRH----HPAPFPIELAERLIRMFSFVGDTVLDPFMGTGTTNVA 305

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRI 265
           A    R+ IGIE+ Q+Y    T+RI
Sbjct: 306 AGLWGRNSIGIEVDQEYFLFGTQRI 330


>gi|193215938|ref|YP_001997137.1| DNA methylase N-4/N-6 domain-containing protein [Chloroherpeton
           thalassium ATCC 35110]
 gi|193089415|gb|ACF14690.1| DNA methylase N-4/N-6 domain protein [Chloroherpeton thalassium
           ATCC 35110]
          Length = 328

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 36/62 (58%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPT KP  L+  ++   +     +LDPF GSG++G     L+R FIG E+ + Y +I  K
Sbjct: 255 HPTLKPVELMHHLVKLVSFENQTVLDPFMGSGSTGVACLTLKRKFIGYELDERYYEICKK 314

Query: 264 RI 265
           RI
Sbjct: 315 RI 316


>gi|300215360|gb|ADJ79773.1| type III restricction-modification system: methylase [Lactobacillus
           salivarius CECT 5713]
          Length = 479

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 6/73 (8%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           +L   +KPE LL RI+ S+T   DI+LD F GSG++ A A K+ R +I IE + DY+   
Sbjct: 287 ELDNGKKPEKLLQRIIASATDENDIVLDFFGGSGSTAATAHKMNRKYITIE-QMDYV--- 342

Query: 262 TKRIASVQPLGNI 274
             R   V+ L N+
Sbjct: 343 --REKIVKRLNNV 353


>gi|219855690|ref|YP_002472812.1| hypothetical protein CKR_2347 [Clostridium kluyveri NBRC 12016]
 gi|219569414|dbj|BAH07398.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 347

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 106/250 (42%), Gaps = 38/250 (15%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
           K ++  VL  +  K+ +L+  DPPYN+   G   +  +          D  ++ EA+  F
Sbjct: 110 KKDTFDVL--MDGKTANLVVTDPPYNVNYEGTAGKIKN----------DNMAN-EAFYDF 156

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
             A        +  + +++V  +            +  F++    +W+K + +    GR 
Sbjct: 157 LLAAFQNTEAAMAKDASIYVFHADTEGLNFRRAFSDAGFYLSGTCIWKKQSLV---LGRS 213

Query: 145 -FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
            +Q  HE +++     K KG    Y   K               I    +  +N D    
Sbjct: 214 PYQWQHEPILFGW---KKKGKHNWYSDRKQTT------------IWEFEKPKKNSD---- 254

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPT KP AL++  +++S+    I+LDPF GSG++    ++  R    IE+ + Y D+  K
Sbjct: 255 HPTMKPVALVAYPILNSSLSNCIVLDPFGGSGSTLIACEQTDRICYTIELDEKYCDVIVK 314

Query: 264 RIASVQPLGN 273
           R   ++ +GN
Sbjct: 315 RY--IEQVGN 322


>gi|308272438|emb|CBX29042.1| hypothetical protein N47_J00230 [uncultured Desulfobacterium sp.]
          Length = 745

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           + TQKPE+L+  I+ +S+  GD++ D F GSGT+ AVA+KL R +I  ++ +  I    K
Sbjct: 355 YATQKPESLVEIIIKASSNEGDLVADFFCGSGTTAAVAEKLGRKWIATDLGKFAIHTTRK 414

Query: 264 RIASVQ 269
           R+  VQ
Sbjct: 415 RLIGVQ 420


>gi|284008244|emb|CBA74551.1| phage DNA methyltransferase [Arsenophonus nasoniae]
          Length = 346

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 17/112 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK-FSSFEAY 81
           ++ G+++  ++ LP  S+DLI  DPPY        YR         + SWD+ + + E Y
Sbjct: 9   LVNGDALPYVKTLPDDSIDLILTDPPY--------YR-------VKSCSWDRQWKTTEQY 53

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
            A+   +L+  +R+LKPNG+L++  S         ML+N +  +LN I+W K
Sbjct: 54  LAWLDDYLVEFQRILKPNGSLYLFCSSTLAADTEIMLRN-HMKVLNHIIWAK 104



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP ALL  I+ +S+K G  + D F GSG++   A KL R  IG+E++ D      K
Sbjct: 267 HPCEKPAALLEHIINASSKSGHTVADFFMGSGSTVKAAIKLGRQAIGVELETDRFMQTKK 326

Query: 264 RIASV 268
            I ++
Sbjct: 327 EIENL 331


>gi|127457|sp|P00473|MTH2_HAEPH RecName: Full=Modification methylase HhaII; Short=M.HhaII; AltName:
           Full=Adenine-specific methyltransferase HhaII
 gi|148898|gb|AAA24963.1| methyltransferase [Haemophilus haemolyticus]
          Length = 228

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 101/231 (43%), Gaps = 30/231 (12%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
           K N I + + +P K+V + F DP Y   L+   Y  +           ++ +  +  D  
Sbjct: 16  KMNGIDLFKLIPDKAVKIAFFDPQYRGVLDKMSYGNE-----GKGRGKERAALPQMTDEI 70

Query: 85  TRAWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRG 142
            + ++    RVL PNG L++ +  +H +  +   L+N  +  +++ + W K      +R 
Sbjct: 71  IQQFINEFERVLLPNGYLFLWVDKFHLVEGVKPWLENTPSLSVVDMLTWDKQKIGMGYRT 130

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           RR     E L+     PK    T+    +            W       +E+L++K    
Sbjct: 131 RR---RSEYLVVIQKEPKKAKITWTLHNIPDV---------W-------AEKLQSKP--- 168

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
            H   KP  +  ++++++T+ GD+ILDP  G  +     K+  R+FIG ++
Sbjct: 169 -HTHSKPIEMQKQLILATTQEGDLILDPASGGYSVFECCKQTNRNFIGCDL 218


>gi|14590480|ref|NP_142548.1| modification methylase [Pyrococcus horikoshii OT3]
 gi|3256990|dbj|BAA29673.1| 309aa long hypothetical modification methylase [Pyrococcus
           horikoshii OT3]
          Length = 309

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 111/272 (40%), Gaps = 47/272 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KI+ G+S + +E++P  SV L+   PPY                +A  D    FSS+E Y
Sbjct: 10  KIVFGSSEN-MEEIPDNSVHLVVTSPPY---------------YNAPFDFPGLFSSYEEY 53

Query: 82  DAFTRAWLLACRRVLKP-------NGTLWVIGSYHNIFR--IGTMLQNLNFWILNDIVWR 132
               R       RVL+P          + + G  + I    I  M+  L F   + I+WR
Sbjct: 54  LNLLRKVGKELMRVLQPGRYACFVTQDVRIEGKLYPIVSDLIHIMVHELGFEYQDKIIWR 113

Query: 133 KSN-----------------PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
           K                   PM  +    ++   E +I+  P    +         K+  
Sbjct: 114 KPEGYIRISRRSGVLIQHPYPMYYYPDNIYE---EVVIFKKPGKFDRSAVPPEIREKSKI 170

Query: 176 EDVQMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
              + +++ W + +      L ++   K +    PE L  R++   +  G+ +LDPF GS
Sbjct: 171 SISKFQAEKWYLSVWDIKNVLPHEKWSK-YTAPFPEELAERLIRLYSYVGETVLDPFLGS 229

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           GT+  V++KL R+ IG E+  +  +I  +R+ 
Sbjct: 230 GTTCVVSRKLHRNCIGYEIDLELREIIEERLG 261


>gi|257461052|ref|ZP_05626150.1| adenine-specific DNA methylase [Campylobacter gracilis RM3268]
 gi|257441426|gb|EEV16571.1| adenine-specific DNA methylase [Campylobacter gracilis RM3268]
          Length = 823

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 38/51 (74%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
            + +QKPE ++ RI+ +S+   +++LD F GSGT+ +VA KL+R +IGIEM
Sbjct: 604 FYSSQKPEHMIRRIIQASSNQNNLVLDFFTGSGTTCSVAHKLKRRWIGIEM 654


>gi|119359933|dbj|BAF41976.1| cellulase [uncultured bacterium]
          Length = 375

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 34/42 (80%)

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           I+LDPFFGSGT+G VA+K  R ++GIE+  +YI+IA KR+ +
Sbjct: 332 IVLDPFFGSGTTGLVAQKHGRDWVGIELNPEYIEIAKKRLEA 373



 Score = 41.2 bits (95), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 71/198 (35%), Gaps = 63/198 (31%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKF 75
           K+ I++G+ I  L  LP   V      PPY    +  + GQ+      L     +  +K 
Sbjct: 2   KNVILQGDVIEALRSLPDGFVHTCVTSPPYWGLRDYGVEGQI-----GLEPTPEEYIEKM 56

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWV------IGSYHNI------------------ 111
                            RRVL+ +GTLW+      +GS                      
Sbjct: 57  VEV----------FREVRRVLRDDGTLWLNLGDSYVGSGKGPSGKSAKVHATKDGRQTMN 106

Query: 112 -----------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
                            +R+   LQ   +++ +DI+W K N MP     R   AHE +  
Sbjct: 107 NRVVPYGLKPKDLVGIPWRVALALQADGWYLRSDIIWHKPNAMPESVKDRPTKAHEYIFL 166

Query: 155 ASPSPKAKGYTFNYDALK 172
            S SP+   Y ++ DA++
Sbjct: 167 LSKSPR---YYYDADAIR 181


>gi|325928939|ref|ZP_08190100.1| cation/multidrug efflux pump [Xanthomonas perforans 91-118]
 gi|325540628|gb|EGD12209.1| cation/multidrug efflux pump [Xanthomonas perforans 91-118]
          Length = 624

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 64/150 (42%), Gaps = 22/150 (14%)

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
           MLQ   F      VW K+  +    GR F+N  E ++W S     KG             
Sbjct: 495 MLQIAGFTWRGITVWDKTEGVRPQLGR-FRNQAEYIVWGS-----KG------------- 535

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
              M  D   P+  G  R   +  +K H T KP  L+ R LVS  + G  ILDPF GSGT
Sbjct: 536 --NMPLDRRAPVLPGVIRESVRKADKHHLTGKPTELMRR-LVSICEAGGQILDPFAGSGT 592

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           +   AK     + G+E+   Y ++   R A
Sbjct: 593 TLVAAKLEGYGWTGVEISPHYAEVVRNRFA 622


>gi|76800785|ref|YP_325793.1| modification methylase [Natronomonas pharaonis DSM 2160]
 gi|76556650|emb|CAI48221.1| modification methylase [Natronomonas pharaonis DSM 2160]
          Length = 346

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 113/273 (41%), Gaps = 24/273 (8%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNL-QLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +I+ G++   LE+L   +V+L+   PPY + +L   L+      V ++    D  ++FEA
Sbjct: 6   RIVAGDARG-LEELDDDAVELVVTSPPYPMVELWDDLFADLDGTVASLLSDGDGDAAFEA 64

Query: 81  YDAFTRAWLLACRRVLKPNGTLWV-IGS-----------YHNIFRIGTMLQNLNFWILND 128
                 A      RVL   G   V +G            Y N  RI    ++L F  L +
Sbjct: 65  MHEQLDAVWRELSRVLVDGGIACVNVGDATRTLGDGFRVYQNHARIIEAFESLGFDPLPE 124

Query: 129 IVWRK-SNPMPNFRGRRF--QNAHETL----IWASPSPKAKGYTFNYDALKAANEDVQMR 181
           ++WRK +N    F G      NA+ TL    I    +   + +  N D    A    + R
Sbjct: 125 VLWRKPANSTAKFMGSGMVPPNAYVTLEHEYILVFRNGGRRAFEPNADRRYEAAYFWEER 184

Query: 182 SDWLIPI---CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
           + W   +     G  +  + +  +      P  +  R++   +  GD +LDPF+G+GT+ 
Sbjct: 185 NQWFSDVWTDVRGETQTLDNEDLRDRSAAYPFEIPYRLINMYSTYGDTVLDPFWGTGTTT 244

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
             A    R+ +G E+    ++    R A V  L
Sbjct: 245 LAAMVAGRNSVGYELDDGLVEAFDDRAADVPAL 277


>gi|218781601|ref|YP_002432919.1| DNA methylase N-4/N-6 domain protein [Desulfatibacillum
           alkenivorans AK-01]
 gi|218762985|gb|ACL05451.1| DNA methylase N-4/N-6 domain protein [Desulfatibacillum
           alkenivorans AK-01]
          Length = 394

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 120/293 (40%), Gaps = 35/293 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNL-QLNGQLYRPDHSLVDAVTDSWDKFSSFE- 79
           ++I G+S + ++++  +S+DL+   PPY + Q+   ++      +  + +      ++E 
Sbjct: 11  QMIHGDS-TAMKEIKDQSIDLVVTSPPYPMIQMWDAIFSAQDQEIGNLLERGYGLKAYER 69

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWV-IGS-----------YHNIFRIGTMLQNLNFWILN 127
            +D   + W   C RV+K    L + IG            Y N  RI + L +L F IL 
Sbjct: 70  MHDILDKVWA-ECFRVMKSGAILCINIGDATRSIDGEFSLYPNHARILSSLTDLGFSILP 128

Query: 128 DIVWRKSNPMPN-FRGRRF--QNAHETLIWASPSPKAKGYTFNYDALKAANEDV-----Q 179
           +I+WRK    PN F G       A+ TL         KG    +  ++  N        +
Sbjct: 129 EILWRKQTNAPNKFMGSGMLPGGAYVTLEHEFILVARKGGKREFKGVEKQNRQNSAYFWE 188

Query: 180 MRSDWLIPICSGSERLRNKDGEK---LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
            R+ W   +    +  R + GEK         P  L  R++   +  GD +LDPF G GT
Sbjct: 189 ERNTWFSDVWMDLKGARQEIGEKNLRERSAAFPFELPFRLINMYSAKGDAVLDPFGGLGT 248

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
           +   A    R+    E  ++   + +   ++     N        KR E R+A
Sbjct: 249 TILAAMACGRNSRAYEQDEELSRVFSPEASNFTGFAN--------KRQEERLA 293


>gi|168697888|ref|ZP_02730165.1| ParB domain protein nuclease [Gemmata obscuriglobus UQM 2246]
          Length = 681

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 11/82 (13%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPT KP  L + +L +S  PG ++LDPF GSGT+ A A++  R+   +E+   Y D+  +
Sbjct: 607 HPTPKPAELFAYLLNNSCPPGGLVLDPFAGSGTALAAAEQTGRNAALLELDPRYCDVIVQ 666

Query: 264 RIASVQPLGNIELTVLTGKRTE 285
           R  S           LTG++ E
Sbjct: 667 RFES-----------LTGQKAE 677


>gi|307565394|ref|ZP_07627883.1| DNA (cytosine-5-)-methyltransferase [Prevotella amnii CRIS 21A-A]
 gi|307345844|gb|EFN91192.1| DNA (cytosine-5-)-methyltransferase [Prevotella amnii CRIS 21A-A]
          Length = 441

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 94/232 (40%), Gaps = 31/232 (13%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99
            D+I  DPPYN+   G       S +    DS +     + +  F ++       ++K  
Sbjct: 214 ADMILTDPPYNVNYEGG----GDSKLTIQNDSMEN----DLFLRFLQSVFNVMFSIVKAG 265

Query: 100 GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNAHETLIWASPS 158
           G+ +V  +          ++   F I    VW K + +    GR+ +Q  HE  +     
Sbjct: 266 GSFYVFHADSEGENFRRAIREAGFKIAQCCVWVKDSLV---MGRQDYQWQHEPCL----- 317

Query: 159 PKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILV 218
                Y +   A    N D +  + W                 ++HPT KP AL++  + 
Sbjct: 318 -----YGWKPGAAHFWNSDRKQTTIW---------NFDKPKANRIHPTMKPIALMAYPIT 363

Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
           +S K GDI++D F GSG++    ++  R   G+E+   Y+    +R  ++ P
Sbjct: 364 NSAKNGDIVVDVFSGSGSTIMACQQTDRIGYGMEIDPKYVSATVRRYMAMFP 415


>gi|302343976|ref|YP_003808505.1| ParB domain protein nuclease [Desulfarculus baarsii DSM 2075]
 gi|301640589|gb|ADK85911.1| ParB domain protein nuclease [Desulfarculus baarsii DSM 2075]
          Length = 395

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 24/160 (15%)

Query: 108 YHNIFRIGTMLQNL---NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
           +H      T+ ++L    F I + I+W K   + + RG  +   HE   W +   KA   
Sbjct: 242 WHGALHAATVAESLVACGFGIRSQIIWAKERLVLS-RGH-YHWMHEP-CWYAVKDKAHW- 297

Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
                     N D +  + W IP        + +D + +H TQKP   + R + +++ PG
Sbjct: 298 ----------NGDRKQVTIWNIPS-------KGQDADTIHGTQKPVECMKRPMENNSSPG 340

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
             + +PF GSGT+   A+   R+ + +E+   Y+D+A KR
Sbjct: 341 QAVYEPFSGSGTTIIAAEITGRACLAMELNPAYVDVAVKR 380


>gi|153955267|ref|YP_001396032.1| DNA methylase [Clostridium kluyveri DSM 555]
 gi|146348125|gb|EDK34661.1| DNA methylase [Clostridium kluyveri DSM 555]
          Length = 413

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 106/250 (42%), Gaps = 38/250 (15%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
           K ++  VL  +  K+ +L+  DPPYN+   G   +  +          D  ++ EA+  F
Sbjct: 176 KKDTFDVL--MDGKTANLVVTDPPYNVNYEGTAGKIKN----------DNMAN-EAFYDF 222

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
             A        +  + +++V  +            +  F++    +W+K + +    GR 
Sbjct: 223 LLAAFQNTEAAMAKDASIYVFHADTEGLNFRRAFSDAGFYLSGTCIWKKQSLV---LGRS 279

Query: 145 -FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
            +Q  HE +++     K KG    Y   K               I    +  +N D    
Sbjct: 280 PYQWQHEPILFGW---KKKGKHNWYSDRKQTT------------IWEFEKPKKNSD---- 320

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPT KP AL++  +++S+    I+LDPF GSG++    ++  R    IE+ + Y D+  K
Sbjct: 321 HPTMKPVALVAYPILNSSLSNCIVLDPFGGSGSTLIACEQTDRICYTIELDEKYCDVIVK 380

Query: 264 RIASVQPLGN 273
           R   ++ +GN
Sbjct: 381 RY--IEQVGN 388


>gi|313837569|gb|EFS75283.1| DNA (cytosine-5-)-methyltransferase [Propionibacterium acnes
           HL037PA2]
 gi|314972508|gb|EFT16605.1| DNA (cytosine-5-)-methyltransferase [Propionibacterium acnes
           HL037PA3]
          Length = 577

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 43/64 (67%), Gaps = 1/64 (1%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK-R 264
           T KPE LL R+L+ ST  GD++LD F GS T+ AVA+K+ R ++  E+ +D  +  TK R
Sbjct: 309 TPKPERLLQRVLLISTGAGDLVLDAFAGSETTAAVAQKMGRRWVTCELVEDTFERFTKAR 368

Query: 265 IASV 268
           +A V
Sbjct: 369 LAKV 372


>gi|148656308|ref|YP_001276513.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus sp.
           RS-1]
 gi|148568418|gb|ABQ90563.1| DNA methylase N-4/N-6 domain protein [Roseiflexus sp. RS-1]
          Length = 348

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 20/133 (15%)

Query: 158 SPKAKGYTFNYDALKAANEDVQMR------------SDWLIPICSGSERLRNK-DGEKLH 204
           +PK + Y F++D  + AN+D   R            + W  P     ERLR +  G+  H
Sbjct: 206 NPKGRPY-FSFDGKRPANQDEYKRIFPTFKGRYGVTNVWNHPPLHNEERLRIRGSGKYAH 264

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
             QKP  L+  I+ +S+ PGD+I +PF G  T+G V+  + R     E+ +    +A  R
Sbjct: 265 LNQKPIKLIELIIEASSNPGDVIWEPFGGLCTAGLVSCLMSRIAYCAEIDEHIFKMAVSR 324

Query: 265 I------ASVQPL 271
           +      A  QPL
Sbjct: 325 MEEQVQKARQQPL 337


>gi|314927553|gb|EFS91384.1| DNA (cytosine-5-)-methyltransferase [Propionibacterium acnes
           HL044PA1]
          Length = 600

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 43/64 (67%), Gaps = 1/64 (1%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK-R 264
           T KPE LL R+L+ ST  GD++LD F GS T+ AVA+K+ R ++  E+ +D  +  TK R
Sbjct: 332 TPKPERLLQRVLLISTGAGDLVLDAFAGSETTAAVAQKMGRRWVTCELVEDTFERFTKAR 391

Query: 265 IASV 268
           +A V
Sbjct: 392 LAKV 395


>gi|225375789|ref|ZP_03753010.1| hypothetical protein ROSEINA2194_01421 [Roseburia inulinivorans DSM
           16841]
 gi|225212386|gb|EEG94740.1| hypothetical protein ROSEINA2194_01421 [Roseburia inulinivorans DSM
           16841]
          Length = 270

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 95/252 (37%), Gaps = 32/252 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR--------PDHSLVDAVTDSWD 73
           KI+ G+++ +++       D +  DPPY      Q  R           S  +A+ D   
Sbjct: 30  KILHGDTLKLVKAFQPGIFDAVITDPPYASGGTKQNERNRTTNQKYSSMSAANALPDFDG 89

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                 ++  +   WL   R+  K    + +   +     I   LQ   +      VW K
Sbjct: 90  DNKDQRSWTHWMAEWLYDVRKACKKGAPICLFIDWRQYPSITDALQWAGWIWRGTAVWDK 149

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
            N  P  +GR F+   E ++W S  P                    M  +  +    G  
Sbjct: 150 GNSRPQ-KGR-FRQQAEYIVWGSNGP--------------------MPINRPVSCLPGVF 187

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           R  N    ++H T+KP  L+  + +   +P  +ILDPF G+GT+   A       +GIE+
Sbjct: 188 RYGNPQ-NRIHVTEKPLQLMKDV-IQICEPRGLILDPFVGAGTTVLAAVMTGYRAVGIEV 245

Query: 254 KQDYIDIATKRI 265
              Y  + + R+
Sbjct: 246 TDAYYKLGSDRV 257


>gi|302344012|ref|YP_003808541.1| ParB domain protein nuclease [Desulfarculus baarsii DSM 2075]
 gi|301640625|gb|ADK85947.1| ParB domain protein nuclease [Desulfarculus baarsii DSM 2075]
          Length = 399

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 24/160 (15%)

Query: 108 YHNIFRIGTMLQNL---NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
           +H      T+ ++L    F I + I+W K   + + RG  +   HE   +A    K K +
Sbjct: 244 WHGALHAATVAESLVACGFDIRSQIIWAKERLVLS-RGH-YHWMHEPCWYAV---KGKAH 298

Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
                     N D +  + W IP        + +D + +H TQKP   + R + +++ PG
Sbjct: 299 W---------NGDRKQVTIWNIPS-------KGQDADTIHSTQKPVECMKRPMENNSSPG 342

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
             + +PF GSGTS   A+   R+ + +E+   Y+D+  KR
Sbjct: 343 QAVYEPFSGSGTSIIAAEITGRACLAMELNPAYVDVGVKR 382


>gi|218133429|ref|ZP_03462233.1| hypothetical protein BACPEC_01294 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990804|gb|EEC56810.1| hypothetical protein BACPEC_01294 [Bacteroides pectinophilus ATCC
           43243]
          Length = 418

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 108/250 (43%), Gaps = 39/250 (15%)

Query: 20  KDKIIKGNSI--SVLEKL-PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K ++I G+SI     +KL   +  +L+  DPPYN+ +     +  +   D + D      
Sbjct: 165 KHRVICGDSILPETYDKLMDGQKANLVLTDPPYNVNVEETAGKIKN---DNMPD------ 215

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E +  F  A  +   + ++ + +++V  +           ++  F++    +W+K+  
Sbjct: 216 --EDFYKFLFAAFVNMEQSMEQDASIYVFHADTEGLNFRKAFKDAGFYLSGCCIWKKNAL 273

Query: 137 MPNFRGRR-FQNAHETLIWA-SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           +    GR  +Q  HE  ++      K + Y+           D +  + W        E 
Sbjct: 274 V---LGRSPYQWQHEPCLFGWKKGGKHQWYS-----------DRKQTTIW--------EY 311

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            R K   K HPT KP AL++  + +S     I+LDPF GSG++    ++  R   GIE+ 
Sbjct: 312 DRPK-ASKDHPTMKPVALMAYPIQNSCMSNCIVLDPFLGSGSTLIACEQTHRICYGIELD 370

Query: 255 QDYIDIATKR 264
           + ++D+   R
Sbjct: 371 EKFVDVIVNR 380


>gi|328907821|gb|EGG27584.1| DNA restriction-modification system, DNA methylase
           [Propionibacterium sp. P08]
          Length = 603

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 43/64 (67%), Gaps = 1/64 (1%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK-R 264
           T KPE LL R+L+ ST  GD++LD F GS T+ AVA+K+ R ++  E+ +D  +  TK R
Sbjct: 335 TPKPERLLQRVLLISTGAGDLVLDAFAGSETTAAVAQKMGRRWVTCELVEDTFERFTKAR 394

Query: 265 IASV 268
           +A V
Sbjct: 395 LAKV 398


>gi|332672250|ref|YP_004455258.1| DNA methylase N-4/N-6 domain-containing protein [Cellulomonas fimi
           ATCC 484]
 gi|332341288|gb|AEE47871.1| DNA methylase N-4/N-6 domain protein [Cellulomonas fimi ATCC 484]
          Length = 373

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 44/64 (68%), Gaps = 1/64 (1%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ-DYIDIATKR 264
           T KPEAL++R++  ++ PGD++LD F GSGT+ AVA K  R ++ +E ++  + ++A  R
Sbjct: 284 TPKPEALVARVIGVASDPGDLVLDLFAGSGTTAAVAHKTGRRWVAVEREERTFTEVAVPR 343

Query: 265 IASV 268
           +  V
Sbjct: 344 LELV 347


>gi|297583096|ref|YP_003698876.1| DNA methylase N-4/N-6 domain-containing protein [Bacillus
           selenitireducens MLS10]
 gi|297141553|gb|ADH98310.1| DNA methylase N-4/N-6 domain protein [Bacillus selenitireducens
           MLS10]
          Length = 409

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 111/268 (41%), Gaps = 38/268 (14%)

Query: 20  KDKIIKGNSIS--VLEKLPA-KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + K+I G+S      E L A +  +LI  D PYN+   G   +  +          D   
Sbjct: 165 RHKLICGDSTEAGTYETLMAGEKANLIVTDLPYNVDYEGSAGKIQN----------DNMG 214

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E Y    +A+       L+    ++V  +        T +++  F+I    +W K+ P
Sbjct: 215 DQEFYTFLLKAYQNMFGH-LEDGAGIYVFHADRETVNFRTAMKDAGFFIHQTCIWVKNAP 273

Query: 137 MPNFRGRRFQNAHETLIWA-SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           + N     +   HE +++   P+   K Y            D + R+ W        +R 
Sbjct: 274 VLNRCDYLY--THEPILYGWKPTAGHKFYG-----------DRKQRTVW------NFDRP 314

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
              D   LHPT KP AL +  + +S+    I+LDPF GSG++    ++  R    IE+  
Sbjct: 315 TKSD---LHPTMKPVALCAYPIQNSSLSNCIVLDPFGGSGSTMMACEQTNRIARLIELDP 371

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKR 283
            Y D+  KR    + + + ++T++ G +
Sbjct: 372 KYADVIVKRYIDFKEITD-DVTLIRGGK 398


>gi|281357233|ref|ZP_06243722.1| DNA methylase N-4/N-6 domain protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281316264|gb|EFB00289.1| DNA methylase N-4/N-6 domain protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 409

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 97/235 (41%), Gaps = 43/235 (18%)

Query: 38  KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK 97
           +  DL   DPPYN+ L G          + +T   D  S  +  +  T+A+  A   VLK
Sbjct: 187 EQADLYLVDPPYNVALEGS---------NGLTIQNDNMSDSKFREFLTKAFSCAAD-VLK 236

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
           P    ++  S           ++ NF + +              G      H+TL W   
Sbjct: 237 PGSAFYIFHSDS---------ESCNFRLAS--------------GDTDLEVHQTLYWVKN 273

Query: 158 SPKAKGYTFNYDA---LKAANEDVQMRSDWLIPICSGSERLRNKDGEK---LHPTQKPEA 211
           +     + ++Y +   L         R  W    C  +  + N D  K   +HP+ KP  
Sbjct: 274 AFVLGRFDYHYQSESCLYGWKPGAAHR--WYSDRCQTN--ILNFDKPKHNDVHPSMKPVD 329

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           +L  ++ +S+K G+++LD F GSG++    ++  R    IE+ + Y+D+  KR A
Sbjct: 330 MLVYLIQNSSKRGELVLDNFGGSGSTLIACEQTGRKCRMIELDEKYVDVIRKRWA 384


>gi|308274483|emb|CBX31082.1| hypothetical protein N47_E45940 [uncultured Desulfobacterium sp.]
          Length = 544

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 35/48 (72%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           KPE  L R++  +T PGD++LD F GSGT+GAVA K+ R +I +E+ +
Sbjct: 316 KPEGFLERLIHIATNPGDLVLDSFAGSGTTGAVAHKMGRRWIMVELGE 363


>gi|157414587|ref|YP_001481843.1| hypothetical protein C8J_0267 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157385551|gb|ABV51866.1| hypothetical protein C8J_0267 [Campylobacter jejuni subsp. jejuni
           81116]
          Length = 820

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 51/96 (53%), Gaps = 8/96 (8%)

Query: 172 KAANEDVQMRSDWLIPICS--------GSERLRNKDGEKLHPTQKPEALLSRILVSSTKP 223
           K  +E + ++ + + P+              +R  +    + +QKPE +L RI+ SS+  
Sbjct: 560 KLCHEKIDIKDEKIYPLGDIWNDLYSFTQSEMRVSENISFYSSQKPENMLRRIIQSSSDE 619

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
             +++D F GSGT+  V+ KL R ++G+EM + + +
Sbjct: 620 NSVVMDFFVGSGTTLVVSHKLNRKYLGVEMGEHFYE 655


>gi|153814252|ref|ZP_01966920.1| hypothetical protein RUMTOR_00461 [Ruminococcus torques ATCC 27756]
 gi|145848648|gb|EDK25566.1| hypothetical protein RUMTOR_00461 [Ruminococcus torques ATCC 27756]
          Length = 418

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 108/250 (43%), Gaps = 39/250 (15%)

Query: 20  KDKIIKGNSI--SVLEKL-PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K ++I G+SI     +KL   +  +L+  DPPYN+ +     +  +   D + D      
Sbjct: 165 KHRVICGDSILPETYDKLMDGQKANLVLTDPPYNVNVEETAGKIKN---DNMPD------ 215

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E +  F  A  +   + ++ + +++V  +           ++  F++    +W+K+  
Sbjct: 216 --EDFYKFLFAAFVNMEQSMEQDASIYVFHADTEGLNFRKAFKDAGFYLSGCCIWKKNAL 273

Query: 137 MPNFRGRR-FQNAHETLIWA-SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           +    GR  +Q  HE  ++      K + Y+           D +  + W        E 
Sbjct: 274 V---LGRSPYQWQHEPCLFGWKKGGKHQWYS-----------DRKQTTIW--------EY 311

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            R K   K HPT KP AL++  + +S     I+LDPF GSG++    ++  R   GIE+ 
Sbjct: 312 DRPK-ASKDHPTMKPVALMAYPIQNSCMSNCIVLDPFLGSGSTLIACEQTHRICYGIELD 370

Query: 255 QDYIDIATKR 264
           + ++D+   R
Sbjct: 371 EKFVDVIVNR 380


>gi|308274323|emb|CBX30922.1| hypothetical protein N47_E44340 [uncultured Desulfobacterium sp.]
          Length = 312

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 109/284 (38%), Gaps = 63/284 (22%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G+ + +L++ P    +LI   PPY                D+ + ++      E    F 
Sbjct: 4   GDCLEILKQYPDNFFNLIVTSPPY---------------ADSRSKTYGGIKPNEYVGWF- 47

Query: 86  RAWLLACR---RVLKPNGTL-------WVIGSYHN-IFRIGTMLQNLNFWILNDIVWRKS 134
              LL  +   RVLK +GT         V G  H  +  +   L+   +    + VW K 
Sbjct: 48  ---LLRAKEFLRVLKSDGTFILNIKEKAVNGERHTYVLELILALREQGWLWTEEFVWHKK 104

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYT---------FNYDALKAANEDVQMR---- 181
           N  P     RF++A E  +  + S K   Y          +  + LK  +   + R    
Sbjct: 105 NCFPGKWPNRFRDAWERCLQFNKSNKFNMYQDEVMVPMGDWAKNRLKKLSNTDRTRDESK 164

Query: 182 ---------SDWL-------IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
                    S+W+         +   +    NK+   + P   PE  +       TK  D
Sbjct: 165 VNSGFGKNVSNWVDRDMAYPTNVLHFATECYNKNHSAVFPKSLPEWFIKLF----TKEHD 220

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            +LDPF GSGT+  VA+ L R+ +GI++  +Y  +A +R A  Q
Sbjct: 221 WVLDPFVGSGTTAEVAQNLNRNSVGIDILPEYCKLANERAAHYQ 264


>gi|159899439|ref|YP_001545686.1| DNA methylase N-4/N-6 domain-containing protein [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159892478|gb|ABX05558.1| DNA methylase N-4/N-6 domain protein [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 309

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 49/107 (45%), Gaps = 8/107 (7%)

Query: 184 WLIPICSGSERLRNKDG-----EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
           W  PI + +   R          K HP+ KP ALLS I+   TKP   +LDPF G G + 
Sbjct: 51  WSAPILASAYPTRGPASAAHHIRKAHPSPKPPALLSEIIRFFTKPNGWVLDPFAGVGGTL 110

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
               + +R  IGIE+   YID+  +   +   L    L VL G   E
Sbjct: 111 LACAQTQRQAIGIELSPHYIDLYGQ---AADALNLARLPVLQGDARE 154


>gi|306818543|ref|ZP_07452266.1| DNA restriction-modification system, DNA methylase [Mobiluncus
           mulieris ATCC 35239]
 gi|304648716|gb|EFM46018.1| DNA restriction-modification system, DNA methylase [Mobiluncus
           mulieris ATCC 35239]
          Length = 419

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 38/58 (65%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           T KPE LL RI+   + PGDI+LD F GSGT+ AVA+K+ R ++  E+  D  +  TK
Sbjct: 135 TPKPERLLERIIHIGSNPGDIVLDCFAGSGTTAAVAQKMGRRWVTCELVADTFERFTK 192


>gi|15837243|ref|NP_297931.1| DNA methyltransferase [Xylella fastidiosa 9a5c]
 gi|9105517|gb|AAF83451.1|AE003909_4 DNA methyltransferase [Xylella fastidiosa 9a5c]
          Length = 380

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 31/171 (18%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           ++ G++++VL+ LP + +D     PPY      +  G     D+   D V D        
Sbjct: 51  LLNGDALAVLKSLPDECIDFAMTSPPYWGKREYENGGIGLEADYR--DFVKD-------- 100

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWV-IGSYHN-------IFRIGTMLQNLNFWIL-NDI 129
                   A  L  +RVLKP G+ W+ IG  +N        +R+   L ++  W + N +
Sbjct: 101 ------LAAIFLELKRVLKPTGSFWLNIGDTYNGKGLVGIPWRVAFELTDVQGWTMRNSV 154

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           VW K     +    R  N HE L      P  KGY +N DA+++   + ++
Sbjct: 155 VWNKLKGGMDNSKDRLANVHENLFHFVKQP--KGYYYNADAIRSKPREAKV 203



 Score = 43.5 bits (101), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 36/61 (59%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           H    P  L  R L+++  PG I+LDPF G+GT+   A  L    +GI++ + Y++++ +
Sbjct: 315 HFAPYPLDLCRRPLLATCPPGGIVLDPFCGTGTTLLAAGNLGLKSVGIDISRHYLELSQE 374

Query: 264 R 264
           +
Sbjct: 375 K 375


>gi|294013138|ref|YP_003546598.1| adenine-specific DNA-methyltransferase [Sphingobium japonicum
           UT26S]
 gi|292676468|dbj|BAI97986.1| adenine-specific DNA-methyltransferase [Sphingobium japonicum
           UT26S]
          Length = 646

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 40/63 (63%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +PTQKP  LL RI+ +S+ PGD++ DPF G GT+   A K  R +IG ++    I + T 
Sbjct: 417 YPTQKPVPLLDRIIQASSNPGDVVFDPFCGCGTTIYSAVKNERRWIGCDIAILPIQMVTT 476

Query: 264 RIA 266
           ++A
Sbjct: 477 QLA 479


>gi|162447456|ref|YP_001620588.1| DNA modification methylase [Acholeplasma laidlawii PG-8A]
 gi|161985563|gb|ABX81212.1| DNA modification methylase, putative [Acholeplasma laidlawii PG-8A]
          Length = 292

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 100/226 (44%), Gaps = 34/226 (15%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99
           +DL+F DPPYN+   G   +    + D + D+   F  F  Y AF   +        KP 
Sbjct: 67  IDLVFTDPPYNVDYEGTAGK---IMNDKMEDN--TFYLF-LYKAFENMF-----EHTKPG 115

Query: 100 GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNAHETLIWASPS 158
           G ++V  +           +N  + +   ++W K+  +    GR+ +   HE +++    
Sbjct: 116 GAIYVCHADTEGLNFRNAFKNAGYKLAECLIWVKNALV---LGRQDYHWRHEPILYGWRE 172

Query: 159 PKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILV 218
             A  +           +D    + W        E  + K  E+ HPT KP  L+ + + 
Sbjct: 173 GAAHYFV----------DDRTQDTIW--------EYNKPKRNEE-HPTMKPLELVGKAIA 213

Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           +S++  +I+LD F GSG++   + +L+R    +E+ + ++D+  KR
Sbjct: 214 NSSRVNEIVLDLFGGSGSTMIASDQLQRRARIMELDERFVDVIVKR 259


>gi|313813484|gb|EFS51198.1| DNA (cytosine-5-)-methyltransferase [Propionibacterium acnes
           HL025PA1]
          Length = 617

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 37/54 (68%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           G++   T KPE LL R++   + PGDI+LD F GSGT+ AVA+K+ R ++  E+
Sbjct: 343 GQQPFSTPKPERLLERVITIGSNPGDIVLDVFAGSGTTAAVAQKMGRRWVTCEL 396


>gi|167630967|ref|YP_001681466.1| DNA methylase [Heliobacterium modesticaldum Ice1]
 gi|167593707|gb|ABZ85455.1| DNA methylase [Heliobacterium modesticaldum Ice1]
          Length = 410

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 101/232 (43%), Gaps = 36/232 (15%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           +  K  +L+  DPPYN+   G+  +  +   D + D  DKF  F   DAFT        +
Sbjct: 185 MDGKLANLVVTDPPYNVNYEGKAGKIKN---DNMAD--DKFYRF-LLDAFT-----LTEK 233

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNAHETLI 153
            +    ++++  +            +  F++    +W+K + +    GR  +Q  HE ++
Sbjct: 234 AMAKEASIYIFHADTEGLNFRRAFSDAGFYLSGTCIWKKQSLV---LGRSPYQWQHEPIL 290

Query: 154 WA-SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
           +    + K   Y+           D +  + W        +  +N D    HPT KP  L
Sbjct: 291 FGWKKAGKHAWYS-----------DRKQSTVWEF-----DKPKKNAD----HPTMKPVPL 330

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           ++  +++S+  G I+LDPF GSG++    ++  R    +E+ + + D+  KR
Sbjct: 331 IAYPILNSSMTGCIVLDPFGGSGSTLIACEQTDRICHTVELDEKFCDVIVKR 382


>gi|150009567|ref|YP_001304310.1| adenine-specific DNA methylase [Parabacteroides distasonis ATCC
           8503]
 gi|149937991|gb|ABR44688.1| adenine-specific DNA methylase [Parabacteroides distasonis ATCC
           8503]
          Length = 654

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 14/122 (11%)

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
           E  Q  + W IPI +   +      +  + TQKPEALL RI+ +S+  GD++ D F GSG
Sbjct: 291 EGAQFDNVWDIPIINSQAK-----EDVGYITQKPEALLERIIKASSNEGDLVCDFFGGSG 345

Query: 236 TSGAVAKKLRRSFIGIE--------MKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
           T+ AVA++L R +I  +        M++ +ID   K     Q +G+ +       +   R
Sbjct: 346 TTAAVAERLGRRWITTDIGKPATLVMRKRFIDQEVKPFL-YQAIGDYQKEAFQNNKQYKR 404

Query: 288 VA 289
           + 
Sbjct: 405 IG 406



 Score = 37.0 bits (84), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 71/160 (44%), Gaps = 35/160 (21%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKS-----------VDLIFADPPYN-- 50
           KN   IN+      EW ++++ G+++  ++ L A             VDLI+ DPP++  
Sbjct: 55  KNEQVINK------EWMNRLVYGDNLLAMQALLAGDEATGLPSLRGKVDLIYIDPPFDSK 108

Query: 51  ------LQLNGQLYRPDHSLVD--AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL 102
                 + L G       ++++  A +D+W   +   +Y       L+  R +L   G++
Sbjct: 109 ADYRTKINLPGMDIEQKPTVIEQFAYSDTWQDGTV--SYLKMLYPRLVLMRELLSDKGSI 166

Query: 103 WVIGSYHNIFRIGTMLQNL----NFWILNDIVWRKSNPMP 138
           +V   +H    +  ++ ++    NF  +N+I+W    P P
Sbjct: 167 YVHIDWHVGAYVKVLMDDVFGKDNF--VNNIIWHYGGPSP 204


>gi|206889827|ref|YP_002248296.1| DNA methylase [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741765|gb|ACI20822.1| DNA methylase [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 283

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 113/269 (42%), Gaps = 43/269 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+I G++ S+ E +  +SV L+   PPY                +A  D    F S+EAY
Sbjct: 6   KLIIGDATSMKE-IEDESVHLMITSPPY---------------FNAPFDYKGLFKSYEAY 49

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIG---------SYHNIFRIGTMLQNLNFWILNDIVWR 132
               +       RVLK  G + VI           +  +  +  + Q+  F   + I+W+
Sbjct: 50  FEMIQKVAEETYRVLK-KGRVAVINIDDMLIDGEKFTIVADVTKIFQSAGFKYRDRIIWK 108

Query: 133 KSNPMPNFRGRR---FQNAHETLIWASPSPKA-----KGYTFNYDAL-KAANEDVQ---- 179
           K +       R     QN +    +     ++     KG  FNY ++ K   E+ +    
Sbjct: 109 KPDGYLRISRRSGVLLQNPYPMYFYPDNLLESILIFQKG-KFNYSSVPKDLKEESKIDKK 167

Query: 180 --MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
             + + W   +      L N   EK      PE L  RI+   +  G+ +LDPF GSGT+
Sbjct: 168 EFLENKWYSTLWEMVNVLPNSSLEK-DIAAFPEELPYRIIKLFSYIGETVLDPFAGSGTT 226

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
             VA+KL R+ IGIE+ +  + +  K++ 
Sbjct: 227 MKVARKLGRNSIGIEINKSLLSVIKKKLG 255


>gi|301382136|ref|ZP_07230554.1| putative site-specific DNA methyltransferase [Pseudomonas syringae
           pv. tomato Max13]
 gi|302058960|ref|ZP_07250501.1| putative site-specific DNA methyltransferase [Pseudomonas syringae
           pv. tomato K40]
 gi|302134307|ref|ZP_07260297.1| putative site-specific DNA methyltransferase [Pseudomonas syringae
           pv. tomato NCPPB 1108]
          Length = 430

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 64/164 (39%), Gaps = 34/164 (20%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQ-----------LYR---PDHS-------- 63
           G+ + VL  LPA S+D +  DPPY ++  G+            YR   P H+        
Sbjct: 8   GDCLEVLRGLPANSIDSVVTDPPYGIRFMGKSWDGQDIEDRAAYRASMPSHAGACGPNGG 67

Query: 64  --LVDAVTDSWD-KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
              V A    +D       A+ AFT  W     RVLKP G L    +      +   ++ 
Sbjct: 68  HRSVAAEAGKYDLTPDGMRAFQAFTLEWATEALRVLKPGGHLLSFAAARTYHHMAVGIEM 127

Query: 121 LNFWILNDIVWRKSNPMP---NFRGRR------FQNAHETLIWA 155
             F I + I+W   +  P   N +G R       + AHE +  A
Sbjct: 128 AGFEIRDQIMWVFGSGFPKSHNLKGDRAGWGTALKPAHEPICMA 171



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 34/66 (51%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPT KP  L++ +L   T  G   LDPF GSG++G  A      FIGIE    Y+ IA  
Sbjct: 343 HPTVKPTDLMAYLLRLVTPTGGKTLDPFMGSGSTGKAAVLEGFDFIGIEQDAAYMAIAKA 402

Query: 264 RIASVQ 269
           RI    
Sbjct: 403 RIGHAH 408


>gi|153951716|ref|YP_001398660.1| adenine-specific DNA methylase [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152939162|gb|ABS43903.1| adenine-specific DNA methylase [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 820

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 51/96 (53%), Gaps = 8/96 (8%)

Query: 172 KAANEDVQMRSDWLIPICS--------GSERLRNKDGEKLHPTQKPEALLSRILVSSTKP 223
           K  +E + ++ + + P+              +R  +    + +QKPE +L RI+ SS+  
Sbjct: 560 KLCHEKIDIKDEKIYPLGDIWNDLYSFTQSEMRVSENISFYSSQKPENMLRRIIQSSSDE 619

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
             +++D F GSGT+  V+ KL R ++G+EM + + +
Sbjct: 620 NSVVMDFFVGSGTTLVVSHKLNRKYLGVEMGEHFYE 655


>gi|170718367|ref|YP_001783592.1| DNA methylase N-4/N-6 domain-containing protein [Haemophilus somnus
           2336]
 gi|168826496|gb|ACA31867.1| DNA methylase N-4/N-6 domain protein [Haemophilus somnus 2336]
          Length = 254

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 38/55 (69%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           KLHPTQKP  +L R++   T  GD+++DP  GSG++   A++L R+  G E+K+D
Sbjct: 186 KLHPTQKPIDVLKRLIEIFTDEGDVVIDPVAGSGSTLRAARELGRNSYGFEIKKD 240


>gi|192292172|ref|YP_001992777.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Rhodopseudomonas palustris TIE-1]
 gi|192285921|gb|ACF02302.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Rhodopseudomonas palustris TIE-1]
          Length = 566

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 37/48 (77%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           T KPE+L+ +++  +T PGD++LD F GSGT+GAVA K+ R +I +E+
Sbjct: 314 TPKPESLIRQMVSIATAPGDLVLDSFAGSGTTGAVAHKMGRRWIMVEL 361


>gi|46198349|ref|YP_004016.1| methyltransferase [Thermus thermophilus HB27]
 gi|46195971|gb|AAS80389.1| methyltransferase [Thermus thermophilus HB27]
          Length = 308

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 106/291 (36%), Gaps = 61/291 (20%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF- 84
           G++  VL  LP  SV L+   PPY               +    D+  +    E Y+AF 
Sbjct: 27  GDAREVLASLPEASVHLVVTSPPY-------------WTLKRYEDTPGQLGHIEDYEAFL 73

Query: 85  ---TRAWLLACRRVLKPNGTL-WVIGSY---------HNIFRIGTMLQ----NLNFWILN 127
               R W     R+L P G L  V+G           H +F +   +Q     L F  LN
Sbjct: 74  DELDRVWR-EVFRLLVPGGRLVIVVGDVAVARRRFGRHLVFPLHADIQVRCRKLGFDNLN 132

Query: 128 DIVWRK-SNPMPNFRGRRF-------------QNAHETLIWASPSPKAKGYTFNYDALKA 173
            I+W K +N      GR                     L+   P    K      +  + 
Sbjct: 133 PIIWHKHTNASLEVEGRGVFLGKPYEPGAIIKTEIEYILMQRKPGGYRKPTQEQREKSRL 192

Query: 174 ANEDVQ--MRSDWL-IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
             ED     R  W  IP           +  K HP   P  L  R++   +  GD++LDP
Sbjct: 193 PKEDFHRFFRQIWDDIP----------GESTKDHPAPFPLELAERLVRMFSFVGDVVLDP 242

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
           F G+GT+   A +  R  +G+E+   Y  +A +R A   P     L VL G
Sbjct: 243 FAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFAKEVP--GFSLEVLDG 291


>gi|71274520|ref|ZP_00650808.1| DNA methylase N-4/N-6 [Xylella fastidiosa Dixon]
 gi|71901747|ref|ZP_00683818.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
 gi|170730773|ref|YP_001776206.1| DNA methyltransferase [Xylella fastidiosa M12]
 gi|71164252|gb|EAO13966.1| DNA methylase N-4/N-6 [Xylella fastidiosa Dixon]
 gi|71728487|gb|EAO30647.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
 gi|167965566|gb|ACA12576.1| DNA methyltransferase [Xylella fastidiosa M12]
          Length = 380

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 31/171 (18%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           ++ G++++VL+ LP + +D     PPY      +  G     D+   D V D        
Sbjct: 51  LLNGDALAVLKSLPNECIDFAMTSPPYWGKREYENGGIGLEADYR--DFVKD-------- 100

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWV-IGSYHN-------IFRIGTMLQNLNFWIL-NDI 129
                   A  L  +RVLKP G+ W+ IG  +N        +R+   L ++  W + N +
Sbjct: 101 ------LAAIFLELKRVLKPTGSFWLNIGDTYNGKGLVGIPWRVAFELTDVQGWTMRNSV 154

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           VW K     +    R  N HE L      P  KGY +N DA+++   + ++
Sbjct: 155 VWNKLKGGMDNSKDRLANVHENLFHFVKQP--KGYYYNADAIRSKPREAKV 203



 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           H    P  L  R L+++  PG I+LDPF G+GT+   A  L    +GI++ + Y++++ +
Sbjct: 315 HFAPYPIDLCRRPLLATCPPGGIVLDPFCGTGTTLLAAGNLGLKSVGIDISRHYLELSQE 374

Query: 264 R 264
           R
Sbjct: 375 R 375


>gi|15828867|ref|NP_326227.1| type III restriction-modification system: methylase [Mycoplasma
           pulmonis UAB CTIP]
 gi|14089810|emb|CAC13569.1| TYPE III RESTRICTION-MODIFICATION SYSTEM: METHYLASE [Mycoplasma
           pulmonis]
          Length = 573

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 41/62 (66%), Gaps = 2/62 (3%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI-DIATKRIA 266
           KPE ++  IL  +TK  D++LD   GSGT+ AVA K+ R +IGIE + DYI DI  +R+ 
Sbjct: 456 KPEGIIFEILNWTTKKNDLVLDFHLGSGTTTAVAHKMSRKYIGIE-QMDYIQDITIERMK 514

Query: 267 SV 268
            V
Sbjct: 515 KV 516


>gi|55980378|ref|YP_143675.1| putative modification methylase [Thermus thermophilus HB8]
 gi|194709111|pdb|2ZIF|A Chain A, Crystal Structure Of Ttha0409, Putative Dna Modification
           Methylase From Thermus Thermophilus Hb8- Complexed With
           S- Adenosyl-L-Methionine
 gi|194709112|pdb|2ZIF|B Chain B, Crystal Structure Of Ttha0409, Putative Dna Modification
           Methylase From Thermus Thermophilus Hb8- Complexed With
           S- Adenosyl-L-Methionine
 gi|194709113|pdb|2ZIG|A Chain A, Crystal Structure Of Ttha0409, Putative Dna Modification
           Methylase From Thermus Thermophilus Hb8
 gi|194709114|pdb|2ZIG|B Chain B, Crystal Structure Of Ttha0409, Putative Dna Modification
           Methylase From Thermus Thermophilus Hb8
 gi|55771791|dbj|BAD70232.1| putative modification methylase [Thermus thermophilus HB8]
          Length = 297

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 108/297 (36%), Gaps = 62/297 (20%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF- 84
           G++  VL   P  SV L+   PPY               +    D+  +    E Y+AF 
Sbjct: 27  GDAREVLASFPEASVHLVVTSPPY-------------WTLKRYEDTPGQLGHIEDYEAFL 73

Query: 85  ---TRAWLLACRRVLKPNGTL-WVIGSY---------HNIFRIGTMLQ----NLNFWILN 127
               R W     R+L P G L  V+G           H +F +   +Q     L F  LN
Sbjct: 74  DELDRVWR-EVFRLLVPGGRLVIVVGDVAVARRRFGRHLVFPLHADIQVRCRKLGFDNLN 132

Query: 128 DIVWRK-SNPMPNFRGRRF-------------QNAHETLIWASPSPKAKGYTFNYDALKA 173
            I+W K +N      GR                     L+   P    K      +  + 
Sbjct: 133 PIIWHKHTNASLEVEGRGVFLGKPYEPGAIIKTEIEYILMQRKPGGYRKPTQEQREKSRL 192

Query: 174 ANEDVQ--MRSDWL-IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
             ED     R  W  IP           +  K HP   P  L  R++   +  GD++LDP
Sbjct: 193 PKEDFHRFFRQIWDDIP----------GESTKDHPAPFPLELAERLVRMFSFVGDVVLDP 242

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
           F G+GT+   A +  R  +G+E+   Y  +A +R A   P     L VL G  T PR
Sbjct: 243 FAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFAREVP--GFSLEVLDGA-THPR 296


>gi|299138965|ref|ZP_07032142.1| DNA methylase N-4/N-6 domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298599119|gb|EFI55280.1| DNA methylase N-4/N-6 domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 197

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 4/86 (4%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +HPTQKP +L   ++ + +  GD +LD   GSGT+   A    R  IGIE  Q Y DIA 
Sbjct: 110 MHPTQKPVSLCEWLIRTYSNAGDTVLDCCMGSGTTILAALNTDRKGIGIEQDQKYFDIAA 169

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRV 288
           +R    +       T LT    EP +
Sbjct: 170 QRCKETE----ANQTTLTSIPHEPDI 191


>gi|296534837|ref|ZP_06897177.1| DNA (cytosine-5-)-methyltransferase [Roseomonas cervicalis ATCC
           49957]
 gi|296264835|gb|EFH11120.1| DNA (cytosine-5-)-methyltransferase [Roseomonas cervicalis ATCC
           49957]
          Length = 267

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 112/249 (44%), Gaps = 37/249 (14%)

Query: 22  KIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +++ G++ S   V   L      L+  DPPY +  + + +R +  +  + T    K ++ 
Sbjct: 19  RLLCGDATSAADVARLLDGTRPHLMITDPPYGVNYDPE-WRNEAGV--SATMRTGKVAND 75

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL---NFWILNDIVWRKSN 135
           +  D +  AW       L P    +V   +H      T++++L    F I + IVW KS 
Sbjct: 76  DRAD-WREAW------TLFPGDVAYV---WHAGVHARTVIESLEAAGFAIRSQIVWAKSR 125

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            +       +Q  HE  ++A      KG T ++   +            L PI +G    
Sbjct: 126 FVLGRGDYHWQ--HEPALYAV----RKGATGHWQGARDQAT--------LWPISTGG--- 168

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
            ++D   +H TQKP   + R +++++ PG+ + +PF GSG++   A+   R    +E+  
Sbjct: 169 -DEDAATVHGTQKPVECMRRPMLNNSAPGEAVYEPFCGSGSTIIAAETSGRICYAMEIDP 227

Query: 256 DYIDIATKR 264
            Y+D+A +R
Sbjct: 228 RYVDVAVRR 236


>gi|189461068|ref|ZP_03009853.1| hypothetical protein BACCOP_01715 [Bacteroides coprocola DSM 17136]
 gi|189432158|gb|EDV01143.1| hypothetical protein BACCOP_01715 [Bacteroides coprocola DSM 17136]
          Length = 252

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 102/268 (38%), Gaps = 59/268 (22%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           + K + + V+  LP  S+DL+  DPP+ +                    WDK        
Sbjct: 12  LYKADCLEVMPFLPESSIDLVLCDPPFGI----------------TASQWDKII------ 49

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGS--YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
            F   W    RRV K N    + GS  + +  R G + +    W     VW KS    NF
Sbjct: 50  PFPEMWK-EIRRVRKENAPTVLFGSEPFSSFLRCGNLDEFKYDW-----VWEKSK-ASNF 102

Query: 141 RGRRFQ--NAHETLIWASPSPKAKGYTFNYDALKAAN---EDVQMRSDW--LIPICSGSE 193
              + Q   AHE +     S   KG T  Y  ++         +  S+W  +  + + + 
Sbjct: 103 LLAKKQPLKAHELI-----SVFGKGRTPYYPIMEEGEPYGNRTKRGSNWTGINNVPNPTF 157

Query: 194 RLRNK----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           R  NK                +G+ +H  QKP ALL  ++ + TK GD +LD   GS ++
Sbjct: 158 RHENKGTRYPRSVIYFKTAESEGKTIHVNQKPIALLEYLIKTYTKEGDTVLDFASGSMST 217

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRI 265
                   R  I IE  + Y     KR+
Sbjct: 218 AIACIYTNRKCICIEKDETYFSQGEKRV 245


>gi|9630519|ref|NP_046948.1| gp52 [Enterobacteria phage N15]
 gi|3192738|gb|AAC19091.1| gp52 [Enterobacteria phage N15]
          Length = 284

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 38/53 (71%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           HP +KP A++  I+ SS++PGD++ D F GSG++   A KL R  IG+E++++
Sbjct: 214 HPCEKPAAMMEHIIRSSSRPGDVVADFFMGSGSTIKEALKLGRKAIGVEIEEE 266


>gi|126734814|ref|ZP_01750560.1| adenine specific DNA methylase MOD [Roseobacter sp. CCS2]
 gi|126715369|gb|EBA12234.1| adenine specific DNA methylase MOD [Roseobacter sp. CCS2]
          Length = 574

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 5/86 (5%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           R++ G +    +KPE LL +IL   +   D+ILD F GSGT+ AVA K++R +I +E+ +
Sbjct: 331 RHEGGVEFRSGKKPEVLLQKILTHFSDENDLILDSFAGSGTTAAVAHKMKRKWITVEIGE 390

Query: 256 DYIDIATKRIASVQPLGNIELTVLTG 281
                   R+A +     I+ T +TG
Sbjct: 391 HCETHVMPRLAGI-----IDGTDMTG 411


>gi|284006830|emb|CBA72095.1| phage DNA methyltransferase [Arsenophonus nasoniae]
          Length = 236

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 17/112 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK-FSSFEAY 81
           ++ G+++  ++ LP  S+DLI  DPPY        YR         + +WD+ + + E Y
Sbjct: 1   MVNGDALPYVKTLPDASIDLILTDPPY--------YR-------VKSCAWDRQWKTTEQY 45

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
            A+   +L+  +RVLKPNG+L++  S         ML+N +  +LN I+W K
Sbjct: 46  LAWLNDYLVEFQRVLKPNGSLYLFCSAALAADTEIMLRN-HMRVLNHIIWAK 96


>gi|78189066|ref|YP_379404.1| DNA modification methylase-like [Chlorobium chlorochromatii CaD3]
 gi|78171265|gb|ABB28361.1| DNA modification methylase-like protein [Chlorobium chlorochromatii
           CaD3]
          Length = 413

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 2/93 (2%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           H    PE L  RI+   + P + +LDPF GSGT+   A+ L R+ IG E+   +I I   
Sbjct: 181 HLAMFPEELPRRIIKMFSFPNETVLDPFMGSGTTALAARNLNRNSIGYEINPTFIPIIKN 240

Query: 264 RIASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
           +I        +E +V+  K+ E  + FN  V R
Sbjct: 241 KIGMDDVFMKVETSVI--KQPEITIDFNECVNR 271


>gi|310778844|ref|YP_003967177.1| DNA methylase N-4/N-6 domain protein [Ilyobacter polytropus DSM
           2926]
 gi|309748167|gb|ADO82829.1| DNA methylase N-4/N-6 domain protein [Ilyobacter polytropus DSM
           2926]
          Length = 418

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 102/247 (41%), Gaps = 40/247 (16%)

Query: 42  LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY----DAFTRAWLLACRRVLK 97
           L+  DPPYN+   G       S  + +  + D  S  E Y     +++R +       L+
Sbjct: 193 LVVTDPPYNVNYEG-------STKEKLKIANDNLSGNEFYYFLLGSYSRVY-----ESLE 240

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
             G ++V  +          + +  F+     VW K++ +   +   +Q  HE ++    
Sbjct: 241 DGGGIYVFHADTEGINFRKAMVDAGFYFAQCCVWVKNSLVMGRQDYHWQ--HEPILVGWK 298

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
             KA  +  +         D   R+D                   +HPT KP  L++  +
Sbjct: 299 PGKAHNWYSDRKQTTVWKFDRPSRND-------------------IHPTMKPLNLIAYPI 339

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
            +S+KPGDI++D F GSG++    ++L R    +E+   Y+D   KR  +    G  ++T
Sbjct: 340 ENSSKPGDIVIDLFGGSGSTLMACQELERKCRTMEIDPRYVDAIVKRYLAS---GREDIT 396

Query: 278 VLTGKRT 284
           ++   +T
Sbjct: 397 LMRDGKT 403


>gi|304383755|ref|ZP_07366214.1| type II restriction-modification system methylation subunit
           [Prevotella marshii DSM 16973]
 gi|304335279|gb|EFM01550.1| type II restriction-modification system methylation subunit
           [Prevotella marshii DSM 16973]
          Length = 427

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 113/287 (39%), Gaps = 61/287 (21%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF-SSFEAY 81
           +I G+S + L  +P KSV LI   PPY              L D  +D    F  S+E+Y
Sbjct: 9   LINGDSRN-LSLMPDKSVHLIITSPPY------------WQLKDYGSDGQIGFHDSYESY 55

Query: 82  -DAFTRAWLLACRRVLKPNGTLWV-IGS------YHNIFR-------IGTMLQNLNFWIL 126
            +     W   C RVL     L + IG       Y+  ++       I    + L    +
Sbjct: 56  INNLNMVWA-ECNRVLHDGCRLCINIGDQFARSVYYGRYKVIPIRTEIIRFCEALGMDYM 114

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD--------------ALK 172
             ++W+K   M    G         ++ + P P+      +Y+              A++
Sbjct: 115 GAVIWQKQTTMNTTGG-------GAVMGSFPYPRNGILKIDYEFILIFKKQGKAPVPAIE 167

Query: 173 AANEDVQMRSDWLIPICS----GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
                   + +W     S    G  +   +DG   H    PE L  R++   +  G+ + 
Sbjct: 168 QKQYSEMTKDEWNTFFASHWNFGGAK---QDG---HIAVFPEELPHRLIKMFSFAGETVF 221

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           DPF GSGT+   A+ L+R+ IG E+  DY     +++AS    GN+E
Sbjct: 222 DPFMGSGTTAFAARNLQRNSIGYEINPDYKKYYEEKVASSFSFGNVE 268


>gi|58425934|gb|AAW74971.1| site-specific DNA-methyltransferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 162

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 69/170 (40%), Gaps = 22/170 (12%)

Query: 88  WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
           WL  C R+LK    + +   +  +      LQ   F      VW K+  +    GR F+N
Sbjct: 4   WLSECARLLKEGAPVLLFTDWRQLPLTTDALQAAGFKWRGVAVWDKTEGVRPQLGR-FRN 62

Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
             E ++W S     KG                M  D   P+  G  R      +K H T 
Sbjct: 63  QAEYIVWGS-----KG---------------GMPLDRRAPVLPGVVRTPVLKADKHHLTG 102

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           KP  L+ R LV   + G  ILDPF GSGT+   A+     + G+EM Q Y
Sbjct: 103 KPTELM-RSLVRICEAGGRILDPFAGSGTTLVAAELEGYRWTGVEMTQHY 151


>gi|295400607|ref|ZP_06810585.1| DNA methylase N-4/N-6 domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294977510|gb|EFG53110.1| DNA methylase N-4/N-6 domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 665

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 35/46 (76%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           +KPE L+++++  +T   DI+LD F GSGT+ AVA K++R +IGIE
Sbjct: 467 KKPEKLIAKLIELTTNENDIVLDFFLGSGTTAAVAHKMKRRYIGIE 512


>gi|4321654|gb|AAD15792.1| modification methylase LlaFI [Lactococcus lactis]
          Length = 680

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 2/63 (3%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRI 265
           +KPE ++ RI+  +T   D +LD F GS T+ AVA K+ R FIGIE + DYI+ ++  R+
Sbjct: 482 KKPEEIIKRIITIATNTNDTVLDFFMGSATTQAVAMKMNRRFIGIE-QMDYINTVSVPRL 540

Query: 266 ASV 268
             V
Sbjct: 541 QKV 543


>gi|300215356|gb|ADJ79769.1| Adenine specific DNA methylase Mod [Lactobacillus salivarius CECT
           5713]
          Length = 417

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 2/63 (3%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRI 265
           +KPEA++ + +   T   D++LD F GS T+ AVA K+RR FIGIE + DYI+ IA  R+
Sbjct: 233 KKPEAIIKKYIDIFTDEEDLVLDFFMGSATTQAVAMKMRRHFIGIE-QMDYINTIAVPRL 291

Query: 266 ASV 268
             V
Sbjct: 292 QKV 294


>gi|227875281|ref|ZP_03993423.1| possible DNA restriction-modification system, DNA methylase
           [Mobiluncus mulieris ATCC 35243]
 gi|227844186|gb|EEJ54353.1| possible DNA restriction-modification system, DNA methylase
           [Mobiluncus mulieris ATCC 35243]
          Length = 290

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 38/58 (65%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           T KPE LL RI+   + PGDI+LD F GSGT+ AVA+K+ R ++  E+  D  +  TK
Sbjct: 6   TPKPERLLERIIHIGSNPGDIVLDCFAGSGTTAAVAQKMGRRWVTCELVADTFERFTK 63


>gi|144898902|emb|CAM75766.1| DNA methylase N-4/N-6:ParB-like nuclease [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 410

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 105/242 (43%), Gaps = 40/242 (16%)

Query: 29  ISVLEKLPAKSV-DLIFADPPYNLQLNG--QLYRPDHSLV-DAVTDSWDKFSSFEAYDAF 84
           ++ +EK+   S+ DL F DPPYN+      +  + D  ++ D++ D + +F     YDA 
Sbjct: 172 LADVEKVLGGSLADLCFCDPPYNVDYGAPTKTAKKDRRILNDSLGDGFRQF----LYDAS 227

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRI-GTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
                +         G++++  S   +  + G  ++    W    +VW K N     R  
Sbjct: 228 VNILTVT-------KGSVYMCMSSSELHTLQGAFMEAGGHWSTF-VVWAK-NTFTLGRAD 278

Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE-K 202
            +Q  +E +++        G+    D     + D             G     NK  +  
Sbjct: 279 -YQRQYEPILY--------GWKEGADHYWCGDRD------------QGDVWFVNKPAKND 317

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           LHPT KP  L+ R + +S+K  DI+LDPF GSGT+    ++  R    IE+   Y+D+  
Sbjct: 318 LHPTMKPVELVERAIRNSSKSRDIVLDPFGGSGTTLIACERTGRQARLIELAPRYVDVIV 377

Query: 263 KR 264
           +R
Sbjct: 378 RR 379


>gi|262369475|ref|ZP_06062803.1| DNA methylase N-4/N-6 [Acinetobacter johnsonii SH046]
 gi|262315543|gb|EEY96582.1| DNA methylase N-4/N-6 [Acinetobacter johnsonii SH046]
          Length = 515

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 36/61 (59%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           KPE LL+ +L   T   D+ILD F GSGT+ AVA K+ R +IGIEM +        R+  
Sbjct: 307 KPEGLLNILLECCTDKNDLILDSFLGSGTTAAVAHKMGRRYIGIEMGEHAKTHVIPRLEK 366

Query: 268 V 268
           V
Sbjct: 367 V 367


>gi|222112382|ref|YP_002554646.1| DNA methylase n-4/n-6 domain-containing protein [Acidovorax ebreus
           TPSY]
 gi|221731826|gb|ACM34646.1| DNA methylase N-4/N-6 domain protein [Acidovorax ebreus TPSY]
          Length = 471

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 2/93 (2%)

Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           R + K G+ + HP   P AL   ++ + T  GDI+ DPF GSGT+   A++  R    +E
Sbjct: 364 RHKGKIGQDIDHPAVFPVALPEFVIEAYTDAGDIVFDPFGGSGTTMLAAERTGRVCRSVE 423

Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           +  +Y+D+A KR     P   + L + TG+  E
Sbjct: 424 IASEYVDVAIKRFQQNHPGVPVTL-IATGQSFE 455


>gi|148658370|ref|YP_001278575.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus sp.
           RS-1]
 gi|148570480|gb|ABQ92625.1| DNA methylase N-4/N-6 domain protein [Roseiflexus sp. RS-1]
          Length = 314

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 119/282 (42%), Gaps = 36/282 (12%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNL------QL------NGQLYRPDHSLVDAVTD 70
           +I  +    + ++P +S+  I  DPPY +      QL      +G ++R   S    V  
Sbjct: 24  VIHADCFEWMSRIPTESIHAIVTDPPYGVKEYDSEQLEKRSNGHGGIWRIPPSFDGHVRS 83

Query: 71  SWDKFSSF-----EAYDAFTRAWLLACRRVLKPNGTLWVIGS-------YHNIFRIGTML 118
              +F++      E  + +   W     ++L+P   L++  +       + +I R G   
Sbjct: 84  PLPRFTALNSKERERIEQYFYEWAKLAMQILRPGAHLFLASNVFLSQIVFASIVRAGLEF 143

Query: 119 QNLNFWILNDIVW--RKSNPMPNFRG--RRFQNAHETL-IWASPSPKAKGYTFNYDALKA 173
           +     ++  +    R  N    F G     +  +E   I+  P PK  G T   + L+ 
Sbjct: 144 RGQVIRLVRTLRGGDRPKNAEDEFPGVCSMPRGCYEPWGIFRKPVPK--GMTIG-ECLRT 200

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKL---HPTQKPEALLSRILVSSTKPGD-IILD 229
                  R     P     E  R    E+    HP+ KP++ L +I+ +S   G+ I+LD
Sbjct: 201 FQTGGLRRKPDGNPFEDVIESERTPQKERYIADHPSLKPQSFLRQIVYASLPLGEGIVLD 260

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           PF GSG++ A A+ +  S +G+E  ++Y  ++ + I ++  L
Sbjct: 261 PFMGSGSTVAAAEAVGYSALGVEQYREYFLMSLQSIPALSSL 302


>gi|317012500|gb|ADU83108.1| putative type II cytosine specific methyltransferase [Helicobacter
           pylori Lithuania75]
          Length = 403

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 103/260 (39%), Gaps = 54/260 (20%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K  ++ G++   L K+   S++LIF  PPY    N ++Y                 S ++
Sbjct: 142 KPSLLIGDNAQTLNKIVPNSINLIFTSPPY---YNARIY-----------------SDYK 181

Query: 80  AYDAFTRAW---LLACRRVLKPNGTLWVIG----------------SYHNIFRIGTMLQN 120
            Y  +  A    L AC RVL+  G   +I                  Y   F    +L +
Sbjct: 182 NYKDYLNAMSQSLKACFRVLE-EGRFIIINVSPVITKRAGREFESVRYPIHFDFHQILID 240

Query: 121 LNFWILNDIVWRKSN-PMPNFRGRRFQN-----------AHETLIWASPSP--KAKGYTF 166
             F+ +++I+W K +  +PN  G   QN           +   L++   +P    K    
Sbjct: 241 NGFYFVDEILWIKPDFSVPNRIGGYLQNKKPLGYKPNCVSESLLVYRKKAPFLLDKNIKI 300

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
               LK   ++  +     +PI + +         K HP   PE+L  R+L   +   ++
Sbjct: 301 AEKRLKPNKQNNTLFGKKELPIETTNCWYIAPKSSKDHPAVFPESLCERVLNYYSFENEV 360

Query: 227 ILDPFFGSGTSGAVAKKLRR 246
           + DPF GSGT G VAK + R
Sbjct: 361 VCDPFAGSGTFGMVAKSMGR 380


>gi|110668022|ref|YP_657833.1| site-specific DNA-methyltransferase [Haloquadratum walsbyi DSM
           16790]
 gi|109625769|emb|CAJ52204.1| site-specific DNA-methyltransferase [Haloquadratum walsbyi DSM
           16790]
          Length = 988

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 21/146 (14%)

Query: 124 WILNDI-VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
           W L DI VW K++ +P  +  +F+N  E ++  + S + +   F  D ++  N + + ++
Sbjct: 607 WNLRDIIVWDKNHALPYVKNGQFRNVFEHILCFTKSTETE---FQTDEVRITNPN-EFKN 662

Query: 183 DW-----------LIP-----ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
            W           ++P       S S+    +     HP   P  L+SRI+  ++  GDI
Sbjct: 663 WWVEYPERYNPRGMVPRNIWDFMSPSQGAFGQFDALDHPAPLPPGLVSRIVELASNKGDI 722

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIE 252
           + DPF GSG   A A+ L R  IGIE
Sbjct: 723 VFDPFAGSGMVPATAEALNRVGIGIE 748


>gi|121607621|ref|YP_995428.1| DNA methylase N-4/N-6 domain-containing protein [Verminephrobacter
           eiseniae EF01-2]
 gi|121552261|gb|ABM56410.1| DNA methylase N-4/N-6 domain protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 274

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 108/285 (37%), Gaps = 59/285 (20%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I  G+S   L +L   SVDLI   PPY                D   D++        +D
Sbjct: 7   IYLGDSKDQLARLAVDSVDLIVTSPPY---------------ADQRKDTYGGIH----HD 47

Query: 83  AFTRAWLLACR----RVLKPNGTLW-------VIG--SYHNIFRIGTMLQNLNFWILNDI 129
            +   W L       RVLKP GT         V G  S + +  I  M +    W   + 
Sbjct: 48  KYVE-WFLPISGQLLRVLKPTGTFILNIKEKVVDGERSTYVMELIIAMRKQGWLWT-EEF 105

Query: 130 VWRKSNPMPNFRGRRFQNAHETLI---------------------WASPSPKAKGYTFNY 168
           +W K N  P     RF+++ E L+                     WA    K    T   
Sbjct: 106 IWHKKNSYPGKWPNRFRDSWERLLQFNKNRHFNMYQEEVMVPMGDWAKARLKKLSDTDKI 165

Query: 169 -DALKAANEDVQMRSDWL---IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
            D  K  +   +  S+W+       +    L  +   K H    PE L    +   TK  
Sbjct: 166 RDTSKVGSGFGKNISNWIDRGKAYPTNVLHLATECNNKNHSAAFPEELPEWFIKLFTKRL 225

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           D +LDPF GSGT+  VA K++R  IGI++  +Y D+  +++  ++
Sbjct: 226 DTVLDPFMGSGTTLMVANKMQRHSIGIDIVPEYCDMVKQQLRPIE 270


>gi|13540956|ref|NP_110644.1| adenine specific DNA methylase [Thermoplasma volcanium GSS1]
 gi|14324341|dbj|BAB59269.1| TVG0134727 [Thermoplasma volcanium GSS1]
          Length = 348

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 43/65 (66%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           + TQKPEALL RI+ +S+ P  I+ D F GSGT GAVA+KL R +I  ++ +    I  K
Sbjct: 11  YVTQKPEALLKRIIEASSLPDSIVADFFAGSGTLGAVAEKLGRKWIMCDVGKPACMIMRK 70

Query: 264 RIASV 268
           R++ +
Sbjct: 71  RLSDL 75


>gi|194335498|ref|YP_002017292.1| DNA methylase N-4/N-6 domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194307975|gb|ACF42675.1| DNA methylase N-4/N-6 domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 581

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 41/64 (64%)

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           S  + N+ G +    +KPEAL+ R    +T  GD++LD F GSGT+GAVA K+ R +I +
Sbjct: 329 SNNIHNEGGIEFPKGKKPEALIKRCFELATIDGDLVLDSFAGSGTTGAVAHKMGRRWIMV 388

Query: 252 EMKQ 255
           E+ +
Sbjct: 389 ELGE 392


>gi|126461424|ref|YP_001042538.1| nuclease [Rhodobacter sphaeroides ATCC 17029]
 gi|126103088|gb|ABN75766.1| ParB domain protein nuclease [Rhodobacter sphaeroides ATCC 17029]
          Length = 459

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 106/257 (41%), Gaps = 51/257 (19%)

Query: 38  KSVDLIFADPPYNLQLNGQLYR-PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
           +S+D  + DPPYN+   G   +  + ++ DA            A+  F +A  L+   VL
Sbjct: 196 ESIDACWTDPPYNVDYKGAAGKIANDNMADA------------AFREFLQAAFLSAFAVL 243

Query: 97  KPNGTLWVIGS------YHNIFR-IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAH 149
           +    ++V  +      +   FR  G  L     W+   +V  +S+         +Q  H
Sbjct: 244 RSGAPIYVAHADTEGENFRGAFREAGFKLSGCLVWVKPSLVLGRSD---------YQWRH 294

Query: 150 ETLI--WASPSPKA----KGYTFNYDA--------------LKAANEDVQMRSDWLIPIC 189
           E ++  W   +  A    +  T  +DA              +K+  +   +R + L    
Sbjct: 295 EPILYGWKPGAAHAWFGGRARTTVFDAGEVPFEVQLDGSVHVKSGGQTFVIRGEALTVEA 354

Query: 190 SGSERLRNKDGEKL--HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                +R +  +K   HPT KP  L+  +LV+ST+ GD +LD F GSG++     K+ R 
Sbjct: 355 VEGSVIRAEKPKKSVEHPTMKPVGLVRDMLVNSTRRGDSVLDLFGGSGSTLIACHKVGRV 414

Query: 248 FIGIEMKQDYIDIATKR 264
              +E    + D+  +R
Sbjct: 415 ARLMEFDPKFADVIVRR 431


>gi|168698012|ref|ZP_02730289.1| DNA methyltransferase [Gemmata obscuriglobus UQM 2246]
          Length = 501

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           LR    E++  P+Q+P AL+ R+++ ++ P D+++DP+ GSGTS   A +  R +IG + 
Sbjct: 233 LRGGSAERVGFPSQQPVALIERVILRTSNPDDLVIDPYCGSGTSLVAAHRQDRCWIGCDS 292

Query: 254 KQDYIDIATKRIASV 268
             + I++   R+++ 
Sbjct: 293 SPEAIELTRARLSTA 307


>gi|309790262|ref|ZP_07684831.1| DNA methylase N-4/N-6 domain protein [Oscillochloris trichoides
           DG6]
 gi|308227688|gb|EFO81347.1| DNA methylase N-4/N-6 domain protein [Oscillochloris trichoides
           DG6]
          Length = 349

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 42/68 (61%)

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           +  G ++H    PE L    ++++     ++LDPF G+GT+  VAK+L R  IGI++ Q+
Sbjct: 277 DTQGREIHYAAYPEDLCKIPILATCPLTGVVLDPFCGTGTTNLVAKQLFRKSIGIDIAQE 336

Query: 257 YIDIATKR 264
           Y+D A +R
Sbjct: 337 YLDYAYRR 344


>gi|150400630|ref|YP_001324396.1| DNA methylase N-4/N-6 domain-containing protein [Methanococcus
           aeolicus Nankai-3]
 gi|150013333|gb|ABR55784.1| DNA methylase N-4/N-6 domain protein [Methanococcus aeolicus
           Nankai-3]
          Length = 446

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 113/277 (40%), Gaps = 52/277 (18%)

Query: 34  KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV--TDSWDKFSSFEAYDAFTRAWLLA 91
           ++P  SV LI   PPY  QL       D+ + + +   DS++     E  +     W   
Sbjct: 17  EIPDNSVHLIITSPPY-WQLK------DYGVEEQIGFNDSYE-----EYINNLNLVWK-E 63

Query: 92  CRRVLKPN-------GTLWVIGSYHNIFR-------IGTMLQNLNFWILNDIVWRKSNPM 137
           C RVL P        G  +    Y+  ++       I    + + F  +  IVW+K+  M
Sbjct: 64  CYRVLHPGCRMVINIGDQFARSVYYGRYKVIPIRTEIIKFAETIGFDYMGAIVWQKNTTM 123

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL-------------KAANEDVQMRSDW 184
               G        +++ + P P+      +Y+ +             K   E  ++  + 
Sbjct: 124 NTTGG-------ASVMGSYPYPRNGIIKIDYEHILIFKKPGNAPKPSKEIKEASKLTKEE 176

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
                SG         +K H    PE L  RI+   +  G+ +LDPF GSGT+   AKKL
Sbjct: 177 WKEYFSGHWYFNGVKQDK-HLAMFPEELPKRIIKMFSFVGETVLDPFLGSGTTSLAAKKL 235

Query: 245 RRSFIGIEMKQDYIDIATKRIASVQP--LGNIELTVL 279
            R+ IG E+ ++++ I   ++ + Q   L + E+ V+
Sbjct: 236 DRNSIGYELNKEFLPIILDKLGANQETLLKDYEIEVV 272


>gi|237731137|ref|ZP_04561618.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226906676|gb|EEH92594.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 350

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGDI+ D F GSG++   A +L R  IG+E++ D     T+
Sbjct: 283 HPCEKPADMLKQIISASSRPGDIVADFFMGSGSTVKAAIELGRRAIGVELEADRFIQTTE 342

Query: 264 RIASV 268
            +  +
Sbjct: 343 EVEKL 347



 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 31/165 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I  +S+  +  LP  S+DLI  DPPY  ++ NG                WD  + ++ 
Sbjct: 11  ELINADSLQYVATLPDNSIDLIVTDPPYFKVKPNG----------------WD--NQWKG 52

Query: 81  YDAFTRAWLLAC----RRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            D + R WL +C     RVLKP G++++   +     I  M++   F +LN I+W K + 
Sbjct: 53  DDDYLR-WLDSCLAEYARVLKPAGSIYLFCGHRLASDIEIMMR-ARFNVLNHIIWAKPS- 109

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
                GR      E+L    PS +   +  +Y       EDV  R
Sbjct: 110 -----GRWNGCNKESLRAYFPSTERILFAEHYLGPYTGKEDVYER 149


>gi|53793641|ref|YP_112541.1| modification methylase [Flavobacterium phage 11b]
 gi|53748231|emb|CAH56692.1| modification methylase [Flavobacterium phage 11b]
          Length = 216

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/250 (22%), Positives = 93/250 (37%), Gaps = 53/250 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQL----YRPDHSLVDAVTDSWDKFSS 77
           +I   +++ ++ + P    DL   DPPY ++  GQ       P H         WD  +S
Sbjct: 8   EITNEDNMLLMARYPDNYFDLAIVDPPYGIERGGQTETFTKNPKHKRKLHQQKDWD--NS 65

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
               D F   + ++  ++               I+     +++LN   +  I W      
Sbjct: 66  IPTKDYFNELFRVSKNQI---------------IWGANYFVKHLNHSSMGWIFW------ 104

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
             F+G+      E L  +            Y + + A   + +           +  L  
Sbjct: 105 --FKGQ------EGLTMSDGE-------IAYSSFQKATRQINI-----------NRGLIA 138

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           + G  +HPTQKPE L   +L +  K GD ILD   GSG+        +      E+ ++Y
Sbjct: 139 QKGGSIHPTQKPEKLYRWLLENYAKEGDKILDTHLGSGSIAIACHDYKFDLTACELDKEY 198

Query: 258 IDIATKRIAS 267
            D A KRI +
Sbjct: 199 YDAAVKRITN 208


>gi|237744767|ref|ZP_04575248.1| chromosome partitioning protein parB [Fusobacterium sp. 7_1]
 gi|229431996|gb|EEO42208.1| chromosome partitioning protein parB [Fusobacterium sp. 7_1]
          Length = 438

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/260 (21%), Positives = 107/260 (41%), Gaps = 35/260 (13%)

Query: 40  VDLIFADPPYNLQL---NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
           +DL+  DPPYN+     NGQ  + D+              + E + +F  A+      V+
Sbjct: 183 IDLLVTDPPYNVDYQAANGQKIKNDNM-------------NSENFYSFLLAFYKNAYEVM 229

Query: 97  KPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
           +     ++  +          L +  F I   ++W K+  + + +   +++      W  
Sbjct: 230 RAGAGFYIFHADSETKAFRGALADAGFKISQCLIWVKNQFILSRQDYNWKHEPCLYGWKE 289

Query: 157 PSPKAKGYTFNYDAL------------KAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
                    F  D +            K   E ++   +    I   ++ LRN     +H
Sbjct: 290 GVKHFFIRNFTQDTIQEIYSKTESMSKKELQETLKNILEEYTTIIRENKPLRND----IH 345

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PT KP  L+S+++ +S+K    +LD F GSG++   A++L+R    +E  + Y D+  KR
Sbjct: 346 PTMKPIRLISKLIHNSSKENWNVLDLFGGSGSTLIAAEQLKRKAFLMEFDEKYADVIVKR 405

Query: 265 IASVQPLGNIELTVLTGKRT 284
            A    +G  ++ +L   +T
Sbjct: 406 YAE---MGKKDIKLLRNGKT 422


>gi|313896452|ref|ZP_07830003.1| DNA (cytosine-5-)-methyltransferase [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312974876|gb|EFR40340.1| DNA (cytosine-5-)-methyltransferase [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 316

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 114/277 (41%), Gaps = 50/277 (18%)

Query: 20  KDKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K ++I G+S      E+L  +  V+L+  DPPY +QL     +  +          D  +
Sbjct: 64  KHRVICGDSTLPETYERLLGEEKVNLVCTDPPYMIQLESTSGKIKN----------DDLN 113

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             +AY+ F ++   A    +  + +++V  +           ++  F +   +VW+K   
Sbjct: 114 DKDAYE-FLKSAFTAFHSAMATDASIYVFYATAKARIFHDAYEDAGFKVGAGLVWKKDRL 172

Query: 137 MPNFRGRRFQNAHETLIWA-SPSPKAKGY-------TFNYDALKAANEDVQMRSDWLIPI 188
           +      ++   HE +IW      + + Y        F +D +K + +D           
Sbjct: 173 VLTRTDWKY--IHEPIIWGWRKDGRHRWYGDQKQTTVFAFDRIKDSKKDG---------- 220

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
           C              HP+ KP  L++ ++   T+   I+LD F GS ++     +L R  
Sbjct: 221 CG-------------HPSSKPVPLIAYLIKQCTQTNGIVLDGFLGSASTLIACDQLGRIC 267

Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLT--GKR 283
            G+E++  ++D+A +R    +  GN E   L   GKR
Sbjct: 268 YGVELEPKFVDVAVERYIQSKD-GNAEDVFLERDGKR 303


>gi|168704008|ref|ZP_02736285.1| helicase domain protein [Gemmata obscuriglobus UQM 2246]
          Length = 752

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 2/70 (2%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           + +D   + P Q    ++ R L   ++PGD++L PF G G+ G VA K++R F+G E+K 
Sbjct: 658 QEQDERHICPLQL--GVIERCLELWSRPGDLVLSPFAGIGSEGYVALKMKRRFVGCELKP 715

Query: 256 DYIDIATKRI 265
            Y +IAT  +
Sbjct: 716 SYFEIATANL 725


>gi|118593983|ref|ZP_01551335.1| DNA methylase N-4/N-6 [Stappia aggregata IAM 12614]
 gi|118433433|gb|EAV40108.1| DNA methylase N-4/N-6 [Stappia aggregata IAM 12614]
          Length = 264

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 42/72 (58%)

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           R   + G   HP + P AL    +   T PGD++LDPF GS  +G V+++L R++I  E+
Sbjct: 116 RYCKEKGITAHPARFPAALPEYFIRMVTDPGDVVLDPFGGSCITGEVSERLERNWICAEL 175

Query: 254 KQDYIDIATKRI 265
           ++ Y++ A  R 
Sbjct: 176 REGYLEGARGRF 187


>gi|167573518|ref|ZP_02366392.1| DNA modification methylase RsrI [Burkholderia oklahomensis C6786]
          Length = 301

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 69/138 (50%), Gaps = 18/138 (13%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           LP  S+DLI ADPPY L   G+ Y  D           DK S  E + A+TR WL     
Sbjct: 46  LPDASIDLIVADPPYGL---GKDYGNDS----------DKRSGDE-HLAWTREWLDLAIP 91

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
            LK +G+++V  ++     I + L+     ++N+I+W +  P      RRF + H+ + +
Sbjct: 92  KLKSSGSMYVFCTWQYAPEIFSFLKT-KLTMVNEIIWDRRVPSMGGTTRRFTSVHDNIGF 150

Query: 155 ASPSPKAKGYTFNYDALK 172
            + S   KGY F+ D ++
Sbjct: 151 FAVS---KGYYFDLDPVR 165


>gi|256005294|ref|ZP_05430260.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum DSM
           2360]
 gi|255990730|gb|EEU00846.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum DSM
           2360]
 gi|316939535|gb|ADU73569.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum DSM
           1313]
          Length = 623

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 42/65 (64%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +PT+K E LL  IL  ++ PGD++ D F GSGT+ AVA+KL R +IG ++    +    +
Sbjct: 302 YPTEKNETLLEEILNVASNPGDLVADFFCGSGTTMAVAQKLGRRWIGSDINLGAVHTTAR 361

Query: 264 RIASV 268
           R++ +
Sbjct: 362 RVSQI 366


>gi|194709109|pdb|2ZIE|A Chain A, Crystal Structure Of Ttha0409, Putatative Dna Modification
           Methylase From Thermus Thermophilus Hb8-
           Selenomethionine Derivative
 gi|194709110|pdb|2ZIE|B Chain B, Crystal Structure Of Ttha0409, Putatative Dna Modification
           Methylase From Thermus Thermophilus Hb8-
           Selenomethionine Derivative
          Length = 297

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 107/297 (36%), Gaps = 62/297 (20%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF- 84
           G++  VL   P  SV L+   PPY               +    D+  +    E Y+AF 
Sbjct: 27  GDAREVLASFPEASVHLVVTSPPY-------------WTLKRYEDTPGQLGHIEDYEAFL 73

Query: 85  ---TRAWLLACRRVLKPNGTL-WVIGSY---------HNIFRIGTMLQ----NLNFWILN 127
               R W     R+L P G L  V+G           H +F +   +Q     L F  LN
Sbjct: 74  DELDRVWR-EVFRLLVPGGRLVIVVGDVAVARRRFGRHLVFPLHADIQVRCRKLGFDNLN 132

Query: 128 DIVWRK-SNPMPNFRGRRF-------------QNAHETLIWASPSPKAKGYTFNYDALKA 173
            I+W K +N      GR                     L    P    K      +  + 
Sbjct: 133 PIIWHKHTNASLEVEGRGVFLGKPYEPGAIIKTEIEYILXQRKPGGYRKPTQEQREKSRL 192

Query: 174 ANEDVQ--MRSDWL-IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
             ED     R  W  IP           +  K HP   P  L  R++   +  GD++LDP
Sbjct: 193 PKEDFHRFFRQIWDDIP----------GESTKDHPAPFPLELAERLVRXFSFVGDVVLDP 242

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
           F G+GT+   A +  R  +G+E+   Y  +A +R A   P     L VL G  T PR
Sbjct: 243 FAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFAREVP--GFSLEVLDGA-THPR 296


>gi|209963444|ref|YP_002296359.1| type III restriction-modification system methyltransferase,
           putative [Rhodospirillum centenum SW]
 gi|209956910|gb|ACI97546.1| type III restriction-modification system methyltransferase,
           putative [Rhodospirillum centenum SW]
          Length = 554

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 36/50 (72%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           T KPE LL  ++  +T PGD++LD F GSGT+GAVA K+ R +I +E+ +
Sbjct: 306 TPKPEKLLMNVIHIATNPGDLVLDSFAGSGTTGAVAHKMGRRWIMVELGE 355


>gi|239908245|ref|YP_002954986.1| hypothetical protein DMR_36090 [Desulfovibrio magneticus RS-1]
 gi|239798111|dbj|BAH77100.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 221

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 101/236 (42%), Gaps = 39/236 (16%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           I+G+ +  + ++P  SV L+  DPPY     G  +R       +++D  ++  + +  + 
Sbjct: 5   IEGDCLEHIHEIPDGSVALLLTDPPY-----GCTFR-------SISDRTNRTIANDNPED 52

Query: 84  FTRAWLLACRRV---LKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
            TR    +  ++   +K +  + V      +     ++++  +      VW+KS+     
Sbjct: 53  ATRILKESLEQLYPKMKDDSYIVVFSGDKMLADFINIIKSAGYCYQGVAVWKKSHHTQGS 112

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
                +   E +I+A+     KG    YDA                 IC   E    K+ 
Sbjct: 113 LISGLRPITEKIIYAT-----KGKPVLYDA-----------------ICDHFEYPNTKN- 149

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
            + H T+KP  LL  ++ + T PGD ++D F GSG+S   AK + R++ G  +  D
Sbjct: 150 -EFHQTEKPAGLLRELIGAMTVPGDCVVDCFAGSGSSVVQAKAMGRNWWGCVLDPD 204


>gi|27311183|ref|NP_758910.1| ORF17 [Vibrio phage VHML]
 gi|26891703|gb|AAN12315.1| ORF17 [Vibrio phage VHML]
          Length = 359

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 36/66 (54%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  L+  I+ +S + G ++LDPF GSG +     +L   F+G+EM  D      K
Sbjct: 286 HPCEKPLPLMRHIVSTSAREGMVVLDPFMGSGATAKACIELGCHFVGVEMDDDIFSATAK 345

Query: 264 RIASVQ 269
            +A  +
Sbjct: 346 SLAEYK 351



 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 63/140 (45%), Gaps = 23/140 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY- 81
           +   +   +L+ LP  SVDLI  DPPY        +R      DA  + WD  + F A+ 
Sbjct: 14  VFNADCSQLLKTLPDNSVDLIATDPPY--------FRVKQ---DAXDNQWDDETEFLAWL 62

Query: 82  -DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
            D     W     R+LKP+G+L++  S     R   ++    F +LN IVWRK N +   
Sbjct: 63  DDILFDLW-----RILKPSGSLYLFCSDRLAARTEVLIAE-RFNVLNHIVWRKENGVHKR 116

Query: 141 RG----RRFQNAHETLIWAS 156
                 RRF    E +I+A 
Sbjct: 117 HRKEGLRRFCPQTERIIFAE 136


>gi|327399854|ref|YP_004346885.1| type III restriction-modification system methylation subunit
           [Lactobacillus amylovorus GRL 1112]
 gi|327182524|gb|AEA32959.1| type III restriction-modification system methylation subunit
           [Lactobacillus amylovorus GRL 1112]
          Length = 645

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 41/62 (66%), Gaps = 2/62 (3%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRIA 266
           KPE+L++  + + TK  DI+LD F GSGT+ A A K+ R FIGI+ + DYI  IA  R+ 
Sbjct: 457 KPESLIAFFIRAITKENDIVLDFFMGSGTTQAAALKMHRRFIGID-QMDYIKTIAVPRLR 515

Query: 267 SV 268
            V
Sbjct: 516 KV 517


>gi|293372203|ref|ZP_06618590.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CMC 3f]
 gi|292632829|gb|EFF51420.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CMC 3f]
          Length = 251

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           R+ D  ++HPTQK   LL R++   T  GD+++DP  GSGT+   A +  R   G E+K+
Sbjct: 172 RDIDTPRIHPTQKSVPLLERLIELFTDAGDVVIDPCAGSGTTLLAAAQCGRKAYGFEIKK 231

Query: 256 DYIDIATKRIAS-VQP 270
            +   A K I S +QP
Sbjct: 232 KFYADANKIILSRMQP 247


>gi|19745777|ref|NP_606913.1| hypothetical protein spyM18_0742 [Streptococcus pyogenes MGAS8232]
 gi|94990072|ref|YP_598172.1| adenine-specific methyltransferase [Streptococcus phage 10270.1]
 gi|94993984|ref|YP_602082.1| Adenine-specific methyltransferase [Streptococcus phage 10750.1]
 gi|19747918|gb|AAL97412.1| hypothetical phage protein [Streptococcus pyogenes MGAS8232]
 gi|94543580|gb|ABF33628.1| Adenine-specific methyltransferase [Streptococcus phage 10270.1]
 gi|94547492|gb|ABF37538.1| Adenine-specific methyltransferase [Streptococcus phage 10750.1]
          Length = 262

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 41/66 (62%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +HPTQKP  +L R++   T P D+++DP  GSG++   A ++ R+  G E+K+D+   A 
Sbjct: 191 IHPTQKPIPVLKRLIEIFTDPDDVVIDPVAGSGSTIRAAIEMNRNAYGFEIKKDFYKRAK 250

Query: 263 KRIASV 268
           + + S 
Sbjct: 251 EEMLST 256


>gi|329117582|ref|ZP_08246299.1| DNA (cytosine-5-)-methyltransferase [Streptococcus parauberis NCFD
           2020]
 gi|326907987|gb|EGE54901.1| DNA (cytosine-5-)-methyltransferase [Streptococcus parauberis NCFD
           2020]
          Length = 250

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 40/66 (60%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +HPTQKP  +L R++   T P D+++DP  GSG++   A ++ R   G E+K+D+ + A 
Sbjct: 179 IHPTQKPIPVLKRLIEIFTDPEDVVIDPVAGSGSTIRAAIEMNRCAYGFEIKKDFYNKAQ 238

Query: 263 KRIASV 268
             + S 
Sbjct: 239 SEMLST 244


>gi|218129458|ref|ZP_03458262.1| hypothetical protein BACEGG_01035 [Bacteroides eggerthii DSM 20697]
 gi|254881376|ref|ZP_05254086.1| gp10 [Bacteroides sp. 4_3_47FAA]
 gi|217988188|gb|EEC54511.1| hypothetical protein BACEGG_01035 [Bacteroides eggerthii DSM 20697]
 gi|254834169|gb|EET14478.1| gp10 [Bacteroides sp. 4_3_47FAA]
          Length = 254

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 104/268 (38%), Gaps = 59/268 (22%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           + K + + V+  LP  S+DL+  DPP+ +                    WDK        
Sbjct: 12  LYKADCLEVMPFLPESSIDLVLCDPPFGI----------------TASQWDKII------ 49

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGS--YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
            F   W    RRV K N    + GS  + ++ R G  L+   +    D VW KS    NF
Sbjct: 50  PFPEMWK-EIRRVRKENAPTVLFGSEPFSSLLRCGN-LEEFKY----DWVWEKSK-ASNF 102

Query: 141 RGRRFQ--NAHETLIWASPSPKAKGYTFNYDALKAAN---EDVQMRSDW--LIPICSGSE 193
              + Q   AHE +     S   KG T  Y  ++         +  S+W  +  + + + 
Sbjct: 103 LLAKKQPLKAHELI-----SVFGKGRTPYYPIMEEGEPYGNRTKRGSNWTGINNVPNPTF 157

Query: 194 RLRNK----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           R  NK                +G+ +H  QKP ALL  ++ + TK GD +LD   GS ++
Sbjct: 158 RNENKGTRYPRSVIYFKTAESEGKTIHVNQKPIALLQYLIRTYTKEGDTVLDFASGSMST 217

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRI 265
                   R  I IE  + +     KR+
Sbjct: 218 AIACIYTHRKCICIEKDETHFSQGEKRV 245


>gi|148658273|ref|YP_001278478.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus sp.
           RS-1]
 gi|148570383|gb|ABQ92528.1| DNA methylase N-4/N-6 domain protein [Roseiflexus sp. RS-1]
          Length = 350

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 43/85 (50%), Gaps = 9/85 (10%)

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           R  W IP         N D E   P + P    SR +   T PGDI+LD F GSGT+   
Sbjct: 264 RGVWRIPSVRS-----NDDHEAKFPVELP----SRAIKLLTDPGDIVLDCFIGSGTTAIA 314

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRI 265
           A +  R +IGI++ Q Y+D+A   I
Sbjct: 315 AIRAGRRYIGIDILQKYVDLARNNI 339


>gi|285019387|ref|YP_003377098.1| DNA modification methylase [Xanthomonas albilineans GPE PC73]
 gi|283474605|emb|CBA17104.1| putative dna modification methylase protein [Xanthomonas
           albilineans]
          Length = 418

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 38/62 (61%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           LHPT KP  L+ R + +S+K  DI+LDPF GSG++    +K  R    IE+   Y+D+  
Sbjct: 327 LHPTMKPVELVERAVRNSSKTKDIVLDPFGGSGSTLIACEKCGRRARVIELDPKYVDVIV 386

Query: 263 KR 264
           +R
Sbjct: 387 RR 388


>gi|108758950|ref|YP_630621.1| modification methylase [Myxococcus xanthus DK 1622]
 gi|108462830|gb|ABF88015.1| modification methylase [Myxococcus xanthus DK 1622]
          Length = 260

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 95/230 (41%), Gaps = 23/230 (10%)

Query: 42  LIFADPPYNL---QLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKP 98
           L+  DPPY L   +  G   R   +      +   +F +   Y AF+ AWL +    L P
Sbjct: 34  LLHTDPPYCLLTRRRKGGDLRDTRAHKKIDQNPIVRFETVRDYRAFSEAWLSSATAHLTP 93

Query: 99  NGTLWVIGSYHNIFRIGTMLQNLNFWIL-NDIVWRKSNPMPNFRGRRFQNAHETLIWA-S 156
           +  L +  +      I T  + L +  L  + VW K     N   +  +     L+ A +
Sbjct: 94  DAPLIIWTNLLGKEPILTAARGLGYPHLRGEYVWGKRTTDKNANEQTLRVYEVALVIART 153

Query: 157 PSPK-AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
           P+P  A G      A+    +D      W                   HP  KP ++L  
Sbjct: 154 PAPPLAPGDLPTVWAVVGGYDDEGEAKRW-----------------GGHPHHKPFSVLEP 196

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           ++ + ++PGD +LDPF GSG+  + A +L R    +E++ ++ +  T R+
Sbjct: 197 LVRTYSRPGDTVLDPFAGSGSMPSAALRLGRRPACLEIEPEWAERVTHRL 246


>gi|308067601|ref|YP_003869206.1| hypothetical protein PPE_00818 [Paenibacillus polymyxa E681]
 gi|305856880|gb|ADM68668.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 421

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 99/255 (38%), Gaps = 40/255 (15%)

Query: 20  KDKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K ++I G+S +   +   +  K   LI  DPPYN+   G+         DA+    DK  
Sbjct: 165 KHRLICGDSTNQQDIATLMDGKKAQLIVTDPPYNVDYTGKT-------KDALKIENDKMD 217

Query: 77  SFEAYD----AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           + + YD    A+TR +      V     +++V  +               F +    +W 
Sbjct: 218 NNQFYDFLLAAYTRMY-----EVADDGASIYVFHADSEGLNFRKSFIEAGFKLSQCCIWA 272

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K   +       +   HE +++    P    Y          N D +  + W        
Sbjct: 273 KQAMVMGHADYHWM--HEPVLYGW-KPTGGHYW---------NSDRKQTTLWQF-----D 315

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
              RN+     HPT KP  L+S  + +S+K GDI+ DPF GSG++    ++  R     E
Sbjct: 316 RPFRNE----YHPTMKPIPLISYPIKNSSKLGDIVFDPFGGSGSTLIACEETDRLCYTSE 371

Query: 253 MKQDYIDIATKRIAS 267
           +   Y+D+   R  S
Sbjct: 372 LDPKYVDVIVSRYIS 386


>gi|153810297|ref|ZP_01962965.1| hypothetical protein RUMOBE_00678 [Ruminococcus obeum ATCC 29174]
 gi|149833476|gb|EDM88557.1| hypothetical protein RUMOBE_00678 [Ruminococcus obeum ATCC 29174]
          Length = 658

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 39/64 (60%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           + TQKPEAL+ RI+ +S+   DI+ D F GSG + AV+ KL R FI  ++  + I     
Sbjct: 333 YATQKPEALIERIISASSNENDIVADFFAGSGVTAAVSHKLNRKFITSDIGLNSIQTTRD 392

Query: 264 RIAS 267
           R+ S
Sbjct: 393 RLVS 396


>gi|291622002|emb|CAX65035.1| gp54 protein [Vibrio phage VP58.5]
          Length = 216

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 36/66 (54%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  L+  I+ +S + G ++LDPF GSG +     +L   F+G+EM  D      K
Sbjct: 143 HPCEKPLPLMRHIVSTSAREGMVVLDPFMGSGATAKACIELGCHFVGVEMDDDIFSATAK 202

Query: 264 RIASVQ 269
            +A  +
Sbjct: 203 SLAEYK 208


>gi|317474980|ref|ZP_07934249.1| DNA methylase [Bacteroides eggerthii 1_2_48FAA]
 gi|316908883|gb|EFV30568.1| DNA methylase [Bacteroides eggerthii 1_2_48FAA]
          Length = 255

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 105/271 (38%), Gaps = 62/271 (22%)

Query: 23  IIKGNSISVLEKLPAKSV--DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + +G+++ VL  L  + +  D++ +DPPY            H   DAV D    +++ + 
Sbjct: 16  LYRGDALDVLPLLAEEGITADMVLSDPPYGTT---------HCRWDAVIDIPGMWNAVQG 66

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF-WILNDIVWRKSNPMPN 139
                   LL C+    P  +L  +GS        + L+ L + W     VW K+     
Sbjct: 67  ISRPDTPVLLFCQ---HPFTSL--LGS--------SNLRRLRYAW-----VWEKTQATGF 108

Query: 140 FR-GRRFQNAHE-TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
              GR    AHE  L++    PK      +    K    + Q +       C   E  R 
Sbjct: 109 LNAGRMPMKAHEDILVFYDRLPKYHPIKTDGHRRKVVMAEHQRK-------CDAGEIYRK 161

Query: 198 KDGEK-----------------------LHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
            D  +                       LH TQKP ALL  ++ + T  GDI+LD   GS
Sbjct: 162 HDNFRDYISTERYPRSVLKFKTDKQRSCLHATQKPVALLEYLIRTYTDEGDIVLDFAMGS 221

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           G++    +   R F+G+E+ ++    A  RI
Sbjct: 222 GSTAVACRNTGRRFVGVEIDREIFQTALNRI 252


>gi|306828378|ref|ZP_07461620.1| DNA (cytosine-5-)-methyltransferase [Streptococcus pyogenes ATCC
           10782]
 gi|304429428|gb|EFM32495.1| DNA (cytosine-5-)-methyltransferase [Streptococcus pyogenes ATCC
           10782]
          Length = 253

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 41/66 (62%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +HPTQKP  +L R++   T P D+++DP  GSG++   A ++ R+  G E+K+D+   A 
Sbjct: 182 IHPTQKPIPVLKRLIEIFTDPDDVVIDPVAGSGSTIRAAIEMNRNAYGFEIKKDFYKRAK 241

Query: 263 KRIASV 268
           + + S 
Sbjct: 242 EEMLST 247


>gi|261345409|ref|ZP_05973053.1| DNA (cytosine-5-)-methyltransferase [Providencia rustigianii DSM
           4541]
 gi|282566453|gb|EFB71988.1| DNA (cytosine-5-)-methyltransferase [Providencia rustigianii DSM
           4541]
          Length = 350

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 37/65 (56%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  ++  I+ SST+ GD++ D F GSG +   A KL R  IG+E++ +  +    
Sbjct: 282 HPCEKPAVMMEHIINSSTREGDVVADFFMGSGATVKAALKLNRRVIGVELETERFEQTVL 341

Query: 264 RIASV 268
            I  V
Sbjct: 342 EINEV 346



 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 19/113 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAY 81
           ++  +S+S ++ LP   +DLI  DPPY                   T SWD ++ +  AY
Sbjct: 12  LVNEDSLSYIKTLPDNCIDLIATDPPY---------------FQVKTCSWDNQWENVTAY 56

Query: 82  DAFTRAWLLACRRVLKPNGTLWVI-GSYHNIFRIGTMLQNLNFWILNDIVWRK 133
            ++    L    RVLKPNG+L++  GS   +     +L    F +LN I+W K
Sbjct: 57  LSWLDDMLAEFWRVLKPNGSLYMFCGS--KLAADTELLLRERFNVLNHIIWAK 107


>gi|224438796|ref|ZP_03659651.1| putative RNA methylase [Helicobacter cinaedi CCUG 18818]
          Length = 260

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           R+K+  K H    P+ L  R++   +  GDI+LDPF G+GTS   A  L R FIG E+  
Sbjct: 13  RSKNALK-HGATFPQKLSDRVISLYSTKGDIVLDPFLGTGTSARSALSLERDFIGFELNM 71

Query: 256 DYIDIA 261
           ++ ++A
Sbjct: 72  EFYEVA 77


>gi|149173391|ref|ZP_01852021.1| Adenine-specific DNA methylase [Planctomyces maris DSM 8797]
 gi|148847573|gb|EDL61906.1| Adenine-specific DNA methylase [Planctomyces maris DSM 8797]
          Length = 282

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 45/67 (67%), Gaps = 3/67 (4%)

Query: 204 HPTQKPEALLSRILVSSTKP--GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           HP   PE L+ R L+ +  P  G++ILDPF GSG++   A+K+ ++ IG+E+ +DY ++A
Sbjct: 50  HPAIFPEMLVER-LIETFLPLQGEVILDPFAGSGSTIVTAEKMGKTGIGLELSEDYAEVA 108

Query: 262 TKRIASV 268
             R+ ++
Sbjct: 109 RNRLMAL 115


>gi|291515624|emb|CBK64834.1| DNA modification methylase [Alistipes shahii WAL 8301]
          Length = 408

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           H    PE L  R++   +  G+ + DPF GSGT+   A+ L+R+ IG E+  DY     +
Sbjct: 178 HIAVFPEELPHRLIKMFSFAGETVFDPFMGSGTTALAARNLQRNSIGYEINPDYKKYYEE 237

Query: 264 RIASVQPLGNIE 275
           ++AS    GN+E
Sbjct: 238 KVASSFSFGNVE 249


>gi|256396438|ref|YP_003118002.1| DNA methylase N-4/N-6 domain-containing protein [Catenulispora
           acidiphila DSM 44928]
 gi|256362664|gb|ACU76161.1| DNA methylase N-4/N-6 domain protein [Catenulispora acidiphila DSM
           44928]
          Length = 345

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 34/182 (18%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +++I+ G+  + L +LP  +V  +   PPY +L+  G    PD    +    +W +  + 
Sbjct: 9   RNRILVGDVRARLSELPDAAVHCVITSPPYWSLRDYGH---PDQIGAEPTVQAWAETIAA 65

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWV-IG-SYHNIFRIGTMLQNL-------------NF 123
              D           RVL+P+G LW+ +G  Y    R G   + L             + 
Sbjct: 66  VCGDLG---------RVLRPDGVLWLNLGDGYSRHIREGAAKKCLLLGPERVALKMTQSG 116

Query: 124 WIL-NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK--AANEDVQM 180
           W+L N ++W K NPMP     R   +HE L   + SP+   Y F+ DA++  A   + Q 
Sbjct: 117 WLLRNKVIWAKRNPMPANVRDRLSTSHEYLYCFTRSPQ---YYFDLDAIREPAVTANKQQ 173

Query: 181 RS 182
           R+
Sbjct: 174 RA 175



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 1/48 (2%)

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           +PG ++LDPF G+GT G  A++  R ++GIE+  D+  +AT RIA  +
Sbjct: 293 QPG-LVLDPFIGAGTVGVAAERFGRDWLGIELNPDFAALATARIAEAR 339


>gi|218960490|ref|YP_001740265.1| DNA methylase N-4/N-6 [Candidatus Cloacamonas acidaminovorans]
 gi|167729147|emb|CAO80058.1| DNA methylase N-4/N-6 [Candidatus Cloacamonas acidaminovorans]
          Length = 430

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 124/299 (41%), Gaps = 53/299 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           KII G+S   +EK+  +SV LI   PPY  L+  G     +H+ +    D+++     E 
Sbjct: 7   KIIIGDS-RCMEKVKDESVHLIVTSPPYWQLKDYG-----NHNQI-GFNDTYE-----EY 54

Query: 81  YDAFTRAWLLACRRVLKPNGTLWV-IGS------YHNIFR-------IGTMLQNLNFWIL 126
            +     W   C+RVL     L + IG       Y+  ++       I    ++  F  +
Sbjct: 55  INNLNLVWN-ECKRVLHKGCRLCINIGDQFARSVYYGRYKVIPIRTEIIKFCESDGFDYM 113

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL-------------KA 173
             I+W+K        G        T++ + P P+      +Y+ +              A
Sbjct: 114 GAIIWQKVTTCHTTGG-------ATIMGSFPYPRNGIIKLDYEYILIFKKYGDPPSVQSA 166

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKL--HPTQKPEALLSRILVSSTKPGDIILDPF 231
             E  ++  +      +G     N  GEK   H    PE L  R++   +  GD ILDPF
Sbjct: 167 LKEQSKLTIEEWNQYFTGH---WNFSGEKQNKHLAMFPEELPKRLIKMFSFVGDTILDPF 223

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAF 290
            GSGTS   A+ L R+ IG E+ ++Y+ I  +++   Q +   E T    K+ E  + F
Sbjct: 224 LGSGTSSLAARNLNRNSIGYEINENYLPIIKEKLDLEQGVIFQEETYEIIKQKELDINF 282


>gi|124514229|gb|EAY55744.1| putative DNA methylase [Leptospirillum rubarum]
          Length = 263

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 6/76 (7%)

Query: 191 GSER-LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           G++R LRN      HPT KP AL+  +    T  G +ILDPF GSG++G  A      F+
Sbjct: 186 GTDRNLRNH-----HPTVKPTALMRWLCRLVTPAGGLILDPFMGSGSTGKAAVLEGFRFV 240

Query: 250 GIEMKQDYIDIATKRI 265
           GI+++++Y+ IA  RI
Sbjct: 241 GIDVEEEYVRIAEVRI 256


>gi|313145138|ref|ZP_07807331.1| adenine-specific DNA methylase [Helicobacter cinaedi CCUG 18818]
 gi|313130169|gb|EFR47786.1| adenine-specific DNA methylase [Helicobacter cinaedi CCUG 18818]
          Length = 256

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           R+K+  K H    P+ L  R++   +  GDI+LDPF G+GTS   A  L R FIG E+  
Sbjct: 9   RSKNALK-HGATFPQKLSDRVISLYSTKGDIVLDPFLGTGTSARSALSLERDFIGFELNM 67

Query: 256 DYIDIA 261
           ++ ++A
Sbjct: 68  EFYEVA 73


>gi|237750645|ref|ZP_04581125.1| adenine-specific DNA methylase [Helicobacter bilis ATCC 43879]
 gi|229373735|gb|EEO24126.1| adenine-specific DNA methylase [Helicobacter bilis ATCC 43879]
          Length = 279

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           R+K+  K H    P+ L  R++   +  GDI+LDPF G+GTS   A  L R FIG E+  
Sbjct: 32  RSKNALK-HGATFPQKLSDRVISLYSTKGDIVLDPFLGTGTSARSALSLERDFIGFELNM 90

Query: 256 DYIDIA 261
           ++ ++A
Sbjct: 91  EFYEVA 96


>gi|302338349|ref|YP_003803555.1| DNA methylase N-4/N-6 domain protein [Spirochaeta smaragdinae DSM
           11293]
 gi|301635534|gb|ADK80961.1| DNA methylase N-4/N-6 domain protein [Spirochaeta smaragdinae DSM
           11293]
          Length = 352

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 106/271 (39%), Gaps = 35/271 (12%)

Query: 32  LEKLPAKSVDLIFADPPYNL----QLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
           +  + A+++ L+   PPY +     L   L  PD   +    ++ + + +FEA  +    
Sbjct: 15  MRTIEAETIALVVTSPPYPMISMWDLLFALQNPD---IKVALENGNGYKAFEAMHSILDE 71

Query: 88  WLLACRRVLKPNGTLWV--------IGSYHNIF----RIGTMLQNLNFWILNDIVWRKSN 135
               C RVL P G L +        IG++  +F    RI +  + L F  L  ++WRK  
Sbjct: 72  VWRECSRVLMPGGFLCINIGDATRKIGAHFRLFTNHARIISSCEALGFHSLPPLLWRKQT 131

Query: 136 PMPN-FRGRRFQNA-------HETLIWASPSPKAKGYTFNYDALKAANEDV---QMRSDW 184
             P  F G     A       HE ++      K     F+ D            + R+ W
Sbjct: 132 NSPTKFMGSGMLPAGAYVTLEHEYILVFR---KGGNRRFSEDGRIIRKRSALFWEERNSW 188

Query: 185 LIPI--CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
              +    G  +  ++ G +      P  L  R++   +   D +LDPF G+GT  A A 
Sbjct: 189 FSDLWDFKGIRQPLSQKGCRSRSAAFPFELAFRLINMFSIQNDTVLDPFLGTGTVTAAAI 248

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
              R+ +G+E+      +  + I +    GN
Sbjct: 249 ASARNSVGVEIDSGLCGLIKETITAATEAGN 279


>gi|17228785|ref|NP_485333.1| PvuII DNA methyltransferase [Nostoc sp. PCC 7120]
 gi|17130637|dbj|BAB73247.1| PvuII DNA methyltransferase [Nostoc sp. PCC 7120]
          Length = 200

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           G K HP + P+      +   T  GD++LDPF GS T+G VA+  +R +I +E+ QDY+
Sbjct: 133 GVKPHPARFPQGFAEFFIKFLTDEGDLVLDPFAGSNTTGFVAETWQRRWIAVEINQDYV 191


>gi|315106921|gb|EFT78897.1| DNA (cytosine-5-)-methyltransferase [Propionibacterium acnes
           HL030PA1]
          Length = 663

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 6/84 (7%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK-- 263
           T KPE LL RI+   + PGDI+LD F GSGT+ AVA+K+ R ++  E+ +      T+  
Sbjct: 395 TPKPERLLERIIHIGSNPGDIVLDVFAGSGTTAAVAQKMGRRWVTCELLESTFTTFTRPR 454

Query: 264 --RIASVQPLGNIELTVLTGKRTE 285
             ++ + Q  G I  T   GKR +
Sbjct: 455 LEKVLNDQDPGGITRT--KGKRVD 476


>gi|189036170|gb|ACD75435.1| AMDV4_6 [uncultured virus]
          Length = 219

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           KP  ++   L  STK GDI+ DPF GSG++    K++ R+++G E+ ++  +    RI  
Sbjct: 149 KPVEIIDTFLRQSTKEGDIVFDPFMGSGSTAIACKRIGRNYLGFEIDKERFETTNIRIER 208

Query: 268 VQPLGNIEL 276
                ++E+
Sbjct: 209 THVFDDMEV 217


>gi|139473507|ref|YP_001128223.1| phage DNA methylase [Streptococcus pyogenes str. Manfredo]
 gi|134271754|emb|CAM29987.1| phage DNA methylase [Streptococcus pyogenes str. Manfredo]
          Length = 254

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 41/66 (62%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +HPTQKP  +L R++   T P D+++DP  GSG++   A ++ R+  G E+K+D+   A 
Sbjct: 183 IHPTQKPIPVLKRLIEIFTDPDDVVIDPVAGSGSTIRAAIEMNRNAYGFEIKKDFYKRAK 242

Query: 263 KRIASV 268
           + + S 
Sbjct: 243 EEMLST 248


>gi|295100748|emb|CBK98293.1| DNA modification methylase [Faecalibacterium prausnitzii L2-6]
          Length = 244

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 37/67 (55%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +++HPTQKP AL S I     KPG +ILD   GSG+S   A      F G E+ Q+Y  +
Sbjct: 158 KRIHPTQKPVALYSWIFQKYAKPGQMILDTHVGSGSSRIAAYDAGLYFTGFEISQEYFLL 217

Query: 261 ATKRIAS 267
             +R  +
Sbjct: 218 QKERYKA 224


>gi|198276338|ref|ZP_03208869.1| hypothetical protein BACPLE_02533 [Bacteroides plebeius DSM 17135]
 gi|198270780|gb|EDY95050.1| hypothetical protein BACPLE_02533 [Bacteroides plebeius DSM 17135]
          Length = 254

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 101/268 (37%), Gaps = 59/268 (22%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           + K + + V+  LP  S+DL+  DPP+ +                    WDK        
Sbjct: 12  LYKADCLEVMPFLPESSIDLVLCDPPFGI----------------TASQWDKII------ 49

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGS--YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
            F   W    RRV K N    + GS  + ++ R G  L+   +    D VW KS    NF
Sbjct: 50  PFPEMW-KEIRRVRKENAPTVLFGSEPFSSLLRCGN-LEEFKY----DWVWEKSK-ASNF 102

Query: 141 RGRRFQ--NAHETLIWASPSPKAKGYTFNYDALKAAN---EDVQMRSDWLIPICSGSERL 195
              + Q   AHE +     S   KG T  Y  ++         +  S+W       +   
Sbjct: 103 LLAKKQPLKAHELI-----SVFGKGRTPYYPIMEEGEPYGNRTKRGSNWTGIGKVPNPTF 157

Query: 196 RNK------------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           RN+                  +G+ +H  QKP ALL  ++ + TK GD +LD   GS ++
Sbjct: 158 RNENRGTRYPRSVIYFKTAESEGKTIHVNQKPIALLQYLIRTYTKEGDTVLDFASGSMST 217

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRI 265
                   R  I IE  + +     KR+
Sbjct: 218 AIACIYTHRKCICIEKDETHFSQGEKRV 245


>gi|19908853|gb|AAM03023.1|AF472611_4 M.BcnIA [Brevibacillus centrosporus]
          Length = 294

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 46/79 (58%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           R+   +K+HP   P +L  + +   T  G++++DPF GSGT+   A+   R+ +G ++K+
Sbjct: 49  RDIRDKKVHPAVYPISLAKKCIELFTHQGELVIDPFVGSGTTLVAAQDSNRNAVGFDLKE 108

Query: 256 DYIDIATKRIASVQPLGNI 274
           +YI +   R+   + L N+
Sbjct: 109 EYISLCQIRLEENRNLLNV 127


>gi|19746425|ref|NP_607561.1| hypothetical protein spyM18_1488 [Streptococcus pyogenes MGAS8232]
 gi|19748626|gb|AAL98060.1| hypothetical phage protein [Streptococcus pyogenes MGAS8232]
          Length = 251

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 41/66 (62%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +HPTQKP  +L R++   T P D+++DP  GSG++   A ++ R+  G E+K+D+   A 
Sbjct: 180 IHPTQKPIPVLKRLIEIFTDPDDVVIDPVAGSGSTIRAAIEMNRNAYGFEIKKDFYKRAK 239

Query: 263 KRIASV 268
           + + S 
Sbjct: 240 EEMLST 245


>gi|167760205|ref|ZP_02432332.1| hypothetical protein CLOSCI_02578 [Clostridium scindens ATCC 35704]
 gi|167662088|gb|EDS06218.1| hypothetical protein CLOSCI_02578 [Clostridium scindens ATCC 35704]
          Length = 250

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/259 (21%), Positives = 101/259 (38%), Gaps = 31/259 (11%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           + + ++  +P   V LI  DPPY +       R  H ++D      D+   +E +     
Sbjct: 2   DCMELMAHIPDNFVSLILTDPPYGIAYQNHFARQPHEILDG-----DQGIDYERF----- 51

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN--PMPNFRGRR 144
           AW     R+L+ N   +    +         L+   F + N +V  K     + + +G  
Sbjct: 52  AW--ESYRILRDNSHAYFFTRFDCYSFHYDCLRKAGFTVKNCLVVEKGTLGGIGDLKG-S 108

Query: 145 FQNAHETLIWAS------------PSPKAKGYTFNYDALKAANEDVQMRSDWL---IPIC 189
           + N  E +I+               + K +G  F+     +     +  + W     P  
Sbjct: 109 YANNSEWIIFCQKGRRLFQQTQLLENRKKEGTQFHKGREPSKKYKTRFPACWFGEEYPKA 168

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           + +   + K G   HPT K    LS ++  S+   +++ D F G+G++   A    R ++
Sbjct: 169 TYNATWQKKHG-IYHPTVKNVEFLSWLIQISSTRKELVFDGFMGTGSTALAALANGRDYL 227

Query: 250 GIEMKQDYIDIATKRIASV 268
           G E+ + Y  I  KRI  V
Sbjct: 228 GAEINEAYFKITQKRIKEV 246


>gi|330908667|gb|EGH37181.1| DNA modification methylase [Escherichia coli AA86]
          Length = 350

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 41/65 (63%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  +G+E++ D  +   K
Sbjct: 283 HPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALGRRALGVELESDRFNQTVK 342

Query: 264 RIASV 268
            ++ +
Sbjct: 343 EVSEL 347



 Score = 43.9 bits (102), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 19/113 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           +I  + +  ++ LP  S+DLI  DPPY  ++ NG                WD ++   E 
Sbjct: 12  LINADCLHFIQSLPDDSIDLIVTDPPYFKVKPNG----------------WDNQWKGDED 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K
Sbjct: 56  YLKWLDHCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAK 107


>gi|218439657|ref|YP_002377986.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
 gi|218172385|gb|ACK71118.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
          Length = 438

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 2/117 (1%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +PT+K   +L RI+ +S+   D++LD F GSGT+ AVA++L R +I I+     I     
Sbjct: 311 YPTEKNSEMLRRIISASSNAEDLVLDAFAGSGTTVAVAEELGRQWIAIDNSLLAIKTMIH 370

Query: 264 RIA-SVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           R+A   + +G+   +  T  + E  +  N ++  GL   G+I    + NIS T+  +
Sbjct: 371 RLAMGTEVMGDFVKSNETKFKQECLININRVLHSGLDLYGEIAPELE-NISDTMIEE 426



 Score = 39.3 bits (90), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 23/157 (14%)

Query: 20  KDKIIKGNSISVLEKL-----PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           K+K+I G+++ VL  L      A  V LI+ DPPY    + +  + +H+  D +  +   
Sbjct: 55  KNKLIYGDNLRVLRTLLNDVNIAGKVGLIYIDPPYATGASFESRQQNHAYYDLMEGA--- 111

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL----NFWILNDIV 130
                 Y  F R  L+  R +L   G+++V       F I  ++  +    NF   N I 
Sbjct: 112 -----EYIEFLRQRLILLRELLSDEGSIYVHLDEKMAFPIKIIMDEIFGSKNF--RNWIT 164

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
            +K NP  N+  R++ N  + +++ +   K   Y +N
Sbjct: 165 RKKCNP-KNYTRRQYGNISDYILFYT---KTDNYIWN 197


>gi|85717646|ref|ZP_01048585.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
           Nb-311A]
 gi|85695538|gb|EAQ33457.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
           Nb-311A]
          Length = 454

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 42/66 (63%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           D  K HPT KP AL++  +  +T+  DI+LD F GSGTS   A+++ R    +E++  ++
Sbjct: 350 DDLKSHPTVKPVALVADAIKDATRRRDIVLDTFCGSGTSILAAERVGRRAYALELEPRFV 409

Query: 259 DIATKR 264
           D+A +R
Sbjct: 410 DLAIRR 415


>gi|325529766|gb|EGD06617.1| DNA methylase [Burkholderia sp. TJI49]
          Length = 234

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 31/46 (67%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           GD++LDPF GSGT+G  A +  R F GIE++  Y +IA +RI   Q
Sbjct: 168 GDMVLDPFMGSGTTGVAAIRAGRKFTGIEIEPKYFEIACRRIEDAQ 213


>gi|304389846|ref|ZP_07371805.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304327022|gb|EFL94261.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 368

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 14/130 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +I+G++  VLEK P  SV LI  DPPY            HS   A   +   F   E + 
Sbjct: 35  VIQGDAAEVLEKFPDDSVSLILTDPPY------------HSTKKANIANDRAFREDEDFL 82

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           A+   + +  +R+L+P+GT++V  S     R+  M     F  +  I W K N  P + G
Sbjct: 83  AWMETFAVQWKRILRPSGTVYVFCSSAMSARLEIMFSKY-FRPIGHITWSKPND-PGYDG 140

Query: 143 RRFQNAHETL 152
            + +   E L
Sbjct: 141 WKGKMKKEAL 150



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 38/62 (61%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP ALL  ++ +S+   D++LD F GSG++   A  L R  I +E+++ +++   K
Sbjct: 278 HPAEKPSALLEHMIKASSYEDDVVLDCFAGSGSTAVAAVGLGRKAIVVELEEKWVERTIK 337

Query: 264 RI 265
            +
Sbjct: 338 DL 339


>gi|254442327|ref|ZP_05055803.1| DNA methylase [Verrucomicrobiae bacterium DG1235]
 gi|198256635|gb|EDY80943.1| DNA methylase [Verrucomicrobiae bacterium DG1235]
          Length = 330

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 102/290 (35%), Gaps = 72/290 (24%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+++G+S  +L+  P + V L F   PY             S+VD  T S  +F S + Y
Sbjct: 49  KLLQGDSFELLDLFPPECVQLHFTSIPYG------------SIVD-YTGSGLEFGSEKTY 95

Query: 82  DAFT---RAWLLACRRVLKPNGTLWV------------------------------IGSY 108
             F      +L A  R+ K  G + +                              +G  
Sbjct: 96  QKFLDRLELFLAASFRLCKQGGCVVLNARGLSSGSGCGPVGSKTFRGRSKIAAKRGVGRQ 155

Query: 109 HNI---FR----------IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
            N    FR          IG +   + F    D +W K+  +P     R    HE LI  
Sbjct: 156 SNFAEGFRRKDFIDLPGDIGRLGSKVGFTWRGDDIWEKTRCLPESVKDRHARVHENLILL 215

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
           +     KG  + +D  +      +M    L        RL        HP      L   
Sbjct: 216 T-----KGPLYKFDRSRLRQLGSKMDQSVL--------RLPTSTANYGHPATFSPILAEH 262

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
            + ++T  GD++LD F G G++   A K  R  I +E+  D+   A  R+
Sbjct: 263 YIYAATDEGDVVLDAFGGVGSTALAALKHGRHSITMELSHDFFGKALDRL 312


>gi|325107567|ref|YP_004268635.1| DNA methylase N-4/N-6 domain protein [Planctomyces brasiliensis DSM
           5305]
 gi|324967835|gb|ADY58613.1| DNA methylase N-4/N-6 domain protein [Planctomyces brasiliensis DSM
           5305]
          Length = 427

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 46/83 (55%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           + LH  QKP   +   L+S + PGD+I DP  GSG++ AV ++  R F+G ++ +D + +
Sbjct: 345 QDLHEWQKPLVDVEHWLLSFSDPGDLICDPCAGSGSTAAVCRRHDRCFVGGDIDRDAVRL 404

Query: 261 ATKRIASVQPLGNIELTVLTGKR 283
           A  R+    P+ +  +  L   R
Sbjct: 405 AQTRLKEETPVCDTPVLSLGRAR 427


>gi|301321463|gb|ADK70106.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 493

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 16/153 (10%)

Query: 5   NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKS--VDLIFADPPYNLQLNGQLYRPDH 62
           N + INEN         KI   +S  ++E+    S  V+ I  DPPYN+  +       H
Sbjct: 329 NEIYINENI--------KIYNADSYKIVEQFINNSTKVNHIITDPPYNISQSNNF----H 376

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
           +L  A     + F  ++ YD    +W+    ++L  NG++ +  SY  I  I   L++  
Sbjct: 377 TLRSANRQGLN-FGKWD-YDFDLISWIKPYSKLLDKNGSMIIFCSYKYISFIIEELESNM 434

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
             I + I W K+NPMP    RR+    E  IWA
Sbjct: 435 LEIKDVIKWVKTNPMPRNVNRRYVQDTEYAIWA 467


>gi|225869634|ref|YP_002745581.1| phage DNA methylase [Streptococcus equi subsp. equi 4047]
 gi|225699038|emb|CAW92152.1| phage DNA methylase [Streptococcus equi subsp. equi 4047]
          Length = 388

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 95/238 (39%), Gaps = 29/238 (12%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           N   V + +  +  DL+  DPPYN+   G+         DA+T   D   S  A+  F  
Sbjct: 167 NQSDVKKLMGGELADLLITDPPYNVAYQGKTK-------DALTIQNDNMDS-NAFRQFLG 218

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
               A   V+KP    ++  +    +       ++ + +   ++W K N M    GR  Q
Sbjct: 219 EAFKAADSVIKPGAVFYIWHADSEGYNFRGACLDVGWTVRQCLIWNK-NAM--VLGR--Q 273

Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
           + H    W    P   G+      L A++       D+  P        RN D    HPT
Sbjct: 274 DYH----WKH-EPCLYGWKDGASHLWASDRKQTTVIDFDKP-------QRNGD----HPT 317

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            KP  L    + ++TK  DI+LD F GSGT+    +   R    +E    Y+D+  KR
Sbjct: 318 MKPVGLFDYQIKNNTKGHDIVLDLFGGSGTTLIACESNGRCARLMECDPKYVDVIIKR 375


>gi|298253810|ref|ZP_06977399.1| DNA methylase N-4/N-6 domain-containing protein [Gardnerella
           vaginalis 5-1]
 gi|297532146|gb|EFH71119.1| DNA methylase N-4/N-6 domain-containing protein [Gardnerella
           vaginalis 5-1]
          Length = 422

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 110/259 (42%), Gaps = 41/259 (15%)

Query: 20  KDKIIKGNSISVLEK----LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           K +II G++   LE     L    V+L+  DPPYN+   G   +  +  ++      DKF
Sbjct: 178 KHRIICGDATK-LETYKTLLENTKVNLVVTDPPYNVNYEGAAGKIKNDNMEN-----DKF 231

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
             F  +++F         + +  + +++V  +           Q+  F++    +W+K +
Sbjct: 232 YQF-LFNSFVNM-----EQAMADDASIYVFHADTEGLNFRKAFQDAGFYLSGCCIWKKPS 285

Query: 136 PMPNFRGRR-FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
            +    GR  +Q  HE  ++                  A  ++  +   W        + 
Sbjct: 286 LV---LGRSPYQWQHEPCLYGWKKKGKH-------KWYAGRKETSV---WEF-----EKP 327

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            +N D    HPT KP ALL+  + +S+    ++LDPF GSG++    ++  R    IE+ 
Sbjct: 328 KKNAD----HPTMKPIALLAYPIKNSSMTNSLVLDPFAGSGSTLIACEQTGRICYAIELD 383

Query: 255 QDYIDIATKRIASVQPLGN 273
           + Y D+  KR   ++ +GN
Sbjct: 384 EKYCDVIVKRY--IEQVGN 400


>gi|86149055|ref|ZP_01067287.1| type II dna modification enzyme [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|85840413|gb|EAQ57670.1| type II dna modification enzyme [Campylobacter jejuni subsp. jejuni
           CF93-6]
          Length = 822

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 39/67 (58%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+  T KPE LL RI    +    ++LD F GSGT+ A A KL+R ++G+EM + +  + 
Sbjct: 625 KIFDTPKPEKLLKRICDIGSNQNSLVLDFFVGSGTTIATAHKLKRKWLGVEMGEHFYKVI 684

Query: 262 TKRIASV 268
             R+  V
Sbjct: 685 IPRMKKV 691


>gi|309781003|ref|ZP_07675742.1| prophage LambdaMc01, DNA methyltransferase [Ralstonia sp.
           5_7_47FAA]
 gi|330824600|ref|YP_004387903.1| DNA methylase N-4/N-6 domain-containing protein [Alicycliphilus
           denitrificans K601]
 gi|308920306|gb|EFP65964.1| prophage LambdaMc01, DNA methyltransferase [Ralstonia sp.
           5_7_47FAA]
 gi|329309972|gb|AEB84387.1| DNA methylase N-4/N-6 domain protein [Alicycliphilus denitrificans
           K601]
          Length = 471

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 7/114 (6%)

Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           R + K G+ + HP   P AL   ++ + T  GDI+ +PF GSGT+   A++  R    +E
Sbjct: 364 RHKGKIGQDIDHPAVFPVALPEFVIEAYTDAGDIVFEPFGGSGTTMLAAERTGRICCSVE 423

Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILT 306
           +   Y+D+A KR     P   I +T++   ++  +VA    VER      +++ 
Sbjct: 424 IAPQYVDVAIKRFQQNHP--GIPVTLIATGQSFEQVA----VERATTPDAEVVA 471


>gi|261416218|ref|YP_003249901.1| DNA methylase N-4/N-6 domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261372674|gb|ACX75419.1| DNA methylase N-4/N-6 domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302326303|gb|ADL25504.1| putative type III restriction-modification system, Mod subunit
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 548

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           KPE L+S ++ + T+ GD++LD F GSGT+ AVA K+ R +IG+E+          R+  
Sbjct: 325 KPEMLISTLIDAVTEKGDLVLDSFLGSGTTAAVAHKMGRRWIGVELGDHCYSHCISRLQK 384

Query: 268 V 268
           V
Sbjct: 385 V 385


>gi|157156068|ref|YP_001462540.1| DNA methylase [Escherichia coli E24377A]
 gi|157078098|gb|ABV17806.1| DNA methylase [Escherichia coli E24377A]
          Length = 348

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 38/53 (71%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           HP +KP  +L +I+ +S++PGD+++D F GSG++   A  L R  IG+E++++
Sbjct: 283 HPCEKPADMLRQIITASSRPGDLVVDFFMGSGSTIKAAMTLGRRAIGVELEKE 335



 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 23/116 (19%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  ++ LP  SVDLI  DPPY                    + WD  + ++  
Sbjct: 11  ELINADCLEFIQTLPENSVDLIVTDPPY---------------FKVKPEGWD--NQWKGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           D + + WL  C     RVLKP G+L++   +     I  M++   F +LN I+W K
Sbjct: 54  DDYLK-WLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRQ-RFNVLNHIIWAK 107


>gi|288801506|ref|ZP_06406958.1| DNA (cytosine-5-)-methyltransferase domain protein [Prevotella sp.
           oral taxon 299 str. F0039]
 gi|288331587|gb|EFC70073.1| DNA (cytosine-5-)-methyltransferase domain protein [Prevotella sp.
           oral taxon 299 str. F0039]
          Length = 648

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 40/66 (60%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           + TQKPEALL RI+ +S+  G ++ D F GSG + AVA +L R FI  ++  + I+    
Sbjct: 314 YSTQKPEALLERIIKASSNEGMLVADFFGGSGVTAAVANRLERKFIHCDIGINSIETTRD 373

Query: 264 RIASVQ 269
           R+   +
Sbjct: 374 RLCKAE 379


>gi|218960801|ref|YP_001740576.1| putative Site-specific DNA-methyltransferase
           (cytosine-N(4)-specific) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729458|emb|CAO80369.1| putative Site-specific DNA-methyltransferase
           (cytosine-N(4)-specific) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 300

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 44/70 (62%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           R+   + +HP   P +L  +++   +  G++++DPF GSGT+   A+ L R+ +G ++K+
Sbjct: 52  RDIRDKNIHPATFPISLAKKVISLFSHEGELVVDPFVGSGTTLVSAQDLNRNCVGFDLKK 111

Query: 256 DYIDIATKRI 265
           +YI++   R+
Sbjct: 112 EYIELCHNRL 121


>gi|328948065|ref|YP_004365402.1| DNA methylase N-4/N-6 domain protein [Treponema succinifaciens DSM
           2489]
 gi|328448389|gb|AEB14105.1| DNA methylase N-4/N-6 domain protein [Treponema succinifaciens DSM
           2489]
          Length = 671

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 81/360 (22%), Positives = 138/360 (38%), Gaps = 106/360 (29%)

Query: 23  IIKGNSISVLEKLPAKS--VDLIFADPPY--------------NLQLNGQLYRPDHSLV- 65
           +I+G  +S    L  K   VDL++ DPP+              N +L   L + +  L  
Sbjct: 64  VIRGECVSACAYLKEKGILVDLVYIDPPFASGADYSKTVYIRQNPKLAKALKQAEEELEI 123

Query: 66  --------DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
                       D W+K    E Y  +    L A + V+    +++V   YH    +  +
Sbjct: 124 EDLKSFEEKMYGDVWNK----EKYLNWMYENLCAIKSVMSETASIYVHLDYHIGHYVKIL 179

Query: 118 LQNL----NFWILNDIVWRKSNPMPN--FRGRR------------------FQNAHETLI 153
           +  +    NF   ++I+W+++    +  F G                    FQ+  E  I
Sbjct: 180 MDEIFGEDNF--RSEIIWKRATAHSDSGFFGNNYDMIYFYTKSDSAIFNTIFQDYDEKYI 237

Query: 154 ------------WASPSPKAKG-----YTFNYDA-----------LKAANEDVQM----- 180
                       W S +P AKG     Y + YD            LK  +E+ ++     
Sbjct: 238 ARFKYKDPDGRLWDSGNPTAKGLQGGGYDYEYDGYRTLWRYPYETLKKMDEEGRLYRTKN 297

Query: 181 ---RSDWLIPICSGS---------ERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDII 227
              R+   +    G            + ++  E++ + TQKPEALL RI+ +S+    ++
Sbjct: 298 GGIRTKVYLDELKGMPCQALWTDINAVNSQADERIDYATQKPEALLERIIKASSDENMLV 357

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL-----GNIELTVLTGK 282
            D F GSG + AVA KL R FI  ++  + I     R+ + +       G++  +VL  K
Sbjct: 358 ADFFGGSGVTAAVANKLNRRFIHCDVGINSIQTVRDRLIAQKETPNHVRGDVNFSVLEIK 417


>gi|120601920|ref|YP_966320.1| nuclease [Desulfovibrio vulgaris DP4]
 gi|120562149|gb|ABM27893.1| ParB domain protein nuclease [Desulfovibrio vulgaris DP4]
          Length = 684

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 39/69 (56%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           + +D E +H TQKP   + R + +++ PG  + +PF GSGT+   A+   R    +E+  
Sbjct: 600 KGQDAETIHGTQKPVECMKRPMENNSSPGQAVYEPFSGSGTTIMAAELTGRCCYAMELNP 659

Query: 256 DYIDIATKR 264
            Y+D+A  R
Sbjct: 660 AYVDVAVTR 668


>gi|53714093|ref|YP_100085.1| putative site-specific DNA-methyltransferase [Bacteroides fragilis
           YCH46]
 gi|224026988|ref|ZP_03645354.1| hypothetical protein BACCOPRO_03747 [Bacteroides coprophilus DSM
           18228]
 gi|253567381|ref|ZP_04844830.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|255009155|ref|ZP_05281281.1| putative site-specific DNA-methyltransferase [Bacteroides fragilis
           3_1_12]
 gi|256840369|ref|ZP_05545877.1| DNA methylase [Parabacteroides sp. D13]
 gi|265763626|ref|ZP_06092194.1| DNA methylase [Bacteroides sp. 2_1_16]
 gi|293371328|ref|ZP_06617765.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CMC 3f]
 gi|294645298|ref|ZP_06723014.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CC 2a]
 gi|294808760|ref|ZP_06767493.1| DNA (cytosine-5-)-methyltransferase [Bacteroides xylanisolvens SD
           CC 1b]
 gi|313146904|ref|ZP_07809097.1| DNA methylase [Bacteroides fragilis 3_1_12]
 gi|52216958|dbj|BAD49551.1| putative site-specific DNA-methyltransferase [Bacteroides fragilis
           YCH46]
 gi|224020224|gb|EEF78222.1| hypothetical protein BACCOPRO_03747 [Bacteroides coprophilus DSM
           18228]
 gi|251943950|gb|EES84478.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|256737641|gb|EEU50967.1| DNA methylase [Parabacteroides sp. D13]
 gi|263256234|gb|EEZ27580.1| DNA methylase [Bacteroides sp. 2_1_16]
 gi|292633688|gb|EFF52243.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CMC 3f]
 gi|292639377|gb|EFF57679.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CC 2a]
 gi|294444057|gb|EFG12791.1| DNA (cytosine-5-)-methyltransferase [Bacteroides xylanisolvens SD
           CC 1b]
 gi|313135671|gb|EFR53031.1| DNA methylase [Bacteroides fragilis 3_1_12]
          Length = 256

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 104/262 (39%), Gaps = 59/262 (22%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           +FE    + K + + V+  LP  S+DL+  DPP+ +                    WDK 
Sbjct: 5   VFEKDITLYKADCLEVMPLLPESSIDLVLCDPPFGI----------------TASQWDKI 48

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS--YHNIFRIGTMLQNLNFWILNDIVWRK 133
                   F++ W    RRV K N    + GS  + ++ R G + +    W     VW K
Sbjct: 49  I------PFSKMW-EEIRRVRKDNAPTALFGSEPFSSLLRCGNLAEFKYDW-----VWEK 96

Query: 134 SNPMPNFRGRRFQ--NAHETLIWASPSPKAKGYTFNYDALKAAN--EDVQMR-SDW--LI 186
           S    NF   + Q   AHE +     S    G T  Y  ++     E+   R S+W  + 
Sbjct: 97  SK-ASNFLLAKKQPLKAHELI-----SIFCNGRTPYYPIMEEGEPYENRTKRGSNWTGVN 150

Query: 187 PICSGSERLRNK----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
            + + + R  NK                +G+ +H  QKP ALL  ++ + TK GD +LD 
Sbjct: 151 KVPNPTFRNENKGTRYPRSVKYFKTAESEGKTIHVNQKPVALLKYLIKTYTKEGDTVLDF 210

Query: 231 FFGSGTSGAVAKKLRRSFIGIE 252
             GS ++        R  I IE
Sbjct: 211 ASGSMSTAIACIHTNRKCICIE 232


>gi|297627292|ref|YP_003689055.1| DNA methylase ( site-specific DNA-methyltransferase
           adenine-specific, type III restriction-modification
           system) [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296923057|emb|CBL57641.1| DNA methylase ( site-specific DNA-methyltransferase
           adenine-specific, Putative type III
           restriction-modification system) [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 666

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 1/64 (1%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK-R 264
           T KPE LL R++   + PGDI+LD F GSGT+ AVA+K+ R ++  E+ +      T+ R
Sbjct: 398 TPKPERLLERVIHIGSDPGDIVLDVFAGSGTTAAVAQKMGRRWLTCELLESTFSTFTRPR 457

Query: 265 IASV 268
           +A V
Sbjct: 458 LAKV 461


>gi|119715324|ref|YP_922289.1| DNA methylase N-4/N-6 domain-containing protein [Nocardioides sp.
           JS614]
 gi|119535985|gb|ABL80602.1| DNA methylase N-4/N-6 domain protein [Nocardioides sp. JS614]
          Length = 540

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           + +G E +R   G+ +  T KPE LL R+L   + PGD++LD F GSGT+ AVA K+ R 
Sbjct: 310 VRNGKEEVRALVGD-VFATPKPERLLERVLHIGSDPGDVVLDCFAGSGTTAAVAHKMGRR 368

Query: 248 FIGIEM 253
           +I  E+
Sbjct: 369 WITAEV 374


>gi|311741950|ref|ZP_07715760.1| DNA methylase N-4/N-6 [Aeromicrobium marinum DSM 15272]
 gi|311314443|gb|EFQ84350.1| DNA methylase N-4/N-6 [Aeromicrobium marinum DSM 15272]
          Length = 434

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 93/237 (39%), Gaps = 58/237 (24%)

Query: 35  LPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
           +P  +V L+  DPPY+   +   +YR                + F               
Sbjct: 234 IPPGAVSLVLTDPPYSGADVQAGIYR--------------DLAEFAG------------- 266

Query: 94  RVLKPNGTLWVIGSYHNIF--RIGTMLQN--LNFWILNDIVWRKSNPMPNFRGRRFQNAH 149
           RVL P G  W++     +F  ++ T L    L +W    IV+   +P+   R R   +A+
Sbjct: 267 RVLAPGG--WLVAYSPTMFLPQVLTDLSTSGLTYWWQYVIVF-PQHPV-QQRTRALASAY 322

Query: 150 ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
            +++            F  D L  A                     R KD    HP Q+ 
Sbjct: 323 RSVVVFRQPGDTSLPAFTVDVLPGAG--------------------RAKDTS--HPWQQA 360

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
                 ++ + T+PGD ++DPF G+G+ G  A  L R FIG ++   ++D+A  R+A
Sbjct: 361 AGETRPLIEALTEPGDFVVDPFCGTGSFGLDATGLGRRFIGADIDAGHVDLARSRLA 417


>gi|160700711|ref|YP_001552391.1| gp62 [Mycobacterium phage Giles]
 gi|159136661|gb|ABW88457.1| gp62 [Mycobacterium phage Giles]
          Length = 220

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 94/233 (40%), Gaps = 47/233 (20%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHS--LVDAVTDSWDKFSSFEAYDAF--TRAWLLACRRV 95
            D +  DPPY +        P  S  ++++ TD+  + ++ + + AF   +A +    ++
Sbjct: 26  ADALITDPPYGIAYRSGRPNPKGSPRVIESDTDTAARDAALDMWAAFGGAQAAVFGSWKI 85

Query: 96  LKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
            +P GT       H +                 +VW K+        + F  +HE +   
Sbjct: 86  PRPAGT-------HTV-----------------LVWSKNTSGMGDLAQPFGPSHEEIYLL 121

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
               K  G+     ++ A  E  Q  ++ +                  HPT KP  L+  
Sbjct: 122 GRWSKPDGFK-RRGSVIATTEHPQRTAELVA-----------------HPTPKPVGLM-E 162

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +LVS+T  G  I DPF G G +   A+ L R  IG+E+ + Y ++   R++ +
Sbjct: 163 VLVSATPDGASIADPFAGGGATLLAARNLGRKAIGVEIDERYCEVIANRLSQM 215


>gi|56416259|ref|YP_153334.1| DNA methyltransferase SptAIM [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197365182|ref|YP_002144819.1| DNA methyltransferase SptAIM [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|11992068|gb|AAG42425.1|AF306456_2 DNA methyltransferase SptAIM [Salmonella enterica subsp. enterica
           serovar Paratyphi A]
 gi|22135356|gb|AAM93161.1|AF508974_1 DNA methyltransferase SbaIM [Salmonella enterica]
 gi|56130516|gb|AAV80022.1| DNA methyltransferase SptAIM; protects DNA against PvuII
           endonuclease [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197096659|emb|CAR62274.1| DNA methyltransferase SptAIM; protects DNA against PvuII
           endonuclease [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 331

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 126/321 (39%), Gaps = 79/321 (24%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
            +S+ +LE +P  S++L+   PP+ LQ   +    D                 +  D F 
Sbjct: 20  ADSLEMLESMPDNSLNLVMTSPPFALQRKKEYGNHDQE---------------QYIDWFL 64

Query: 86  RAWLLACRRVLKPNGTLWV-----------IGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
           +   L  ++ LK +G+  V           + S +N   +  M+  + F +  D  W   
Sbjct: 65  KFGELVFKK-LKDDGSFVVDFGGAYMKGVPVRSVYNFRVLIRMIDEVGFHLAEDFYWFNP 123

Query: 135 NPMP------NFRGRRFQNAHETLIWASPS--PKA---KGYTFNYDALKAANEDV----- 178
           + +P      N R  R +++  T+ W S +  PK+   K      D +K   ED      
Sbjct: 124 SKLPSPIEWVNKRKLRVKDSVNTIWWFSKTEWPKSDITKVLVPYSDRMKKLIEDPNKFYS 183

Query: 179 -QMRSD--------------------WLIP-------ICSGSERLRNKDGEKLHPTQKPE 210
            +MR                        IP         SG +++    G K HP + P 
Sbjct: 184 PKMRPSGHDISSSFGKDNGGAIPPNLLQIPNSESNGGYLSGCKKI----GVKGHPARFPS 239

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI----A 266
            L    +   T+PGD+++D F GS T+G+ A++L+R ++  E+  +Y+  +  R      
Sbjct: 240 KLPEFFINMLTEPGDLVVDIFGGSNTTGSAAEQLKRKWLSFELSPEYVAASVFRFTDKNT 299

Query: 267 SVQPLGNIELTVLTGKRTEPR 287
           S   L  +  T+L G   + R
Sbjct: 300 SQDILQEMYDTILNGNTLDLR 320


>gi|76801822|ref|YP_326830.1| modification methylase [Natronomonas pharaonis DSM 2160]
 gi|76557687|emb|CAI49270.1| modification methylase [Natronomonas pharaonis DSM 2160]
          Length = 535

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 28/156 (17%)

Query: 124 WILNDIV-WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
           W+L DIV W K   +P     +F+N  E ++  S   K   + F+ D ++ A  D     
Sbjct: 163 WVLQDIVIWDKVRALPYSGTGKFRNVFEYILCFS---KQNDFHFDLDKIRIA--DPAEFK 217

Query: 183 DWLIPICSGSERLRNK-------------------DGEKLHPTQKPEALLSRILVSSTKP 223
           DW I      ER   +                   D    HP   P  L+ RI+  +T+P
Sbjct: 218 DWWIDY---PERYHPRGMVPDNIWEMVTPTQGGWSDMTIDHPAPFPRELVERIVHLTTEP 274

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
            D++ DPF G+GT    ++ + R  +G E+ +++++
Sbjct: 275 DDVVFDPFGGTGTVLGQSEAMGRWPLGFELSEEFVE 310


>gi|331006812|ref|ZP_08330073.1| Type III restriction-modification system methylation subunit [gamma
           proteobacterium IMCC1989]
 gi|330419380|gb|EGG93785.1| Type III restriction-modification system methylation subunit [gamma
           proteobacterium IMCC1989]
          Length = 298

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 38/63 (60%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T KPE L+ R+L  ++  GD+ILD F GS ++ AVA K+ R +IGIE+ +        R+
Sbjct: 91  TPKPERLMQRVLHIASNEGDLILDSFLGSASTVAVAHKMNRRYIGIELGEHAKTHCQPRL 150

Query: 266 ASV 268
             V
Sbjct: 151 QKV 153


>gi|66046061|ref|YP_235902.1| DNA methylase N-4/N-6 [Pseudomonas syringae pv. syringae B728a]
 gi|63256768|gb|AAY37864.1| DNA methylase N-4/N-6 [Pseudomonas syringae pv. syringae B728a]
          Length = 373

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 80/378 (21%), Positives = 132/378 (34%), Gaps = 138/378 (36%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           +I+ G+ I ++  LP +SV      PPY    +  + GQ+          + ++  +F +
Sbjct: 6   QILVGDCIDMMRTLPDESVHTCVTSPPYYGLRDYGVEGQI---------GLEETPAEFIA 56

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWV------IGSY----------------------- 108
               D F        RRVL+ +GT+WV       GS+                       
Sbjct: 57  -RLVDVFREV-----RRVLRADGTIWVNMGDSYAGSWGSQGRPQGDGQMSGRSVTSARQI 110

Query: 109 --HNIFRIGT-----------------------MLQNLNFWILNDIVWRKSNPMPNFRGR 143
             H  F+ GT                        LQN  +++  DI+W K NPMP     
Sbjct: 111 NEHPSFKSGTGVRGREMSMKPKDLMGMPWRLAFALQNDGWYLRQDIIWNKPNPMPESVRD 170

Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDA-LKAANEDVQMRSDWLIPICSGSERL------- 195
           R   +HE +   S   K+K Y F+  A L+  + +   R    +    GSER        
Sbjct: 171 RCTKSHEYIFLLS---KSKKYYFDQTAILEPCSPNTHARLSQDVQAQIGSERANGGAKSN 227

Query: 196 ---------------------------RNKDGEKLH------PTQK-------------- 208
                                      R KD E ++      PT++              
Sbjct: 228 GNMKATTRKSNGVGWGHGTDADDRQRGRVKDNESMNSALAIMPTERNKRSVWTVATHSFK 287

Query: 209 -------PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
                  P  L+   +++    G ++LDPF G+GT+  V+ +  R  +  E+  +Y  +A
Sbjct: 288 GAHFATFPPDLIRPCILAGAPRGGVVLDPFGGAGTTSLVSMQEGRRSVICELNPEYAALA 347

Query: 262 TKRIASVQPLGNIELTVL 279
             RI +    G  ++ V 
Sbjct: 348 RARIDAAWLDGAAQMDVF 365


>gi|15790524|ref|NP_280348.1| CTAG modification methylase [Halobacterium sp. NRC-1]
 gi|169236262|ref|YP_001689462.1| site-specific DNA-methyltransferase [Halobacterium salinarum R1]
 gi|10581030|gb|AAG19828.1| CTAG modification methylase [Halobacterium sp. NRC-1]
 gi|167727328|emb|CAP14114.1| site-specific DNA-methyltransferase [Halobacterium salinarum R1]
          Length = 348

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 108/259 (41%), Gaps = 22/259 (8%)

Query: 35  LPAKSVDLIFADPPYNL-QLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
           L A +VDL+   PPY + ++   ++      + A  D+     + +   A         +
Sbjct: 18  LAADAVDLVVTSPPYPMIEMWDAVFTDLDPEIGAALDAGAGERAHDRMHAVLADAWREVK 77

Query: 94  RVLKPNGTLWV-IGS----------YHNIFRIGTMLQNLNFWILNDIVWRK-SNPMPNFR 141
           RVL+P G   V +G           Y N  R+     +L F  L  ++WRK +N    F 
Sbjct: 78  RVLRPGGIAVVNVGDATRSVDRFRVYDNHARVTNAFADLGFDPLPGVLWRKPTNSAAKFM 137

Query: 142 GRRF--QNAHETL----IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI---CSGS 192
           G      NA+ TL    +    + + +G+    D    A    + R+DW   +    +G+
Sbjct: 138 GSGMVPPNAYVTLEHEHLLVFRNGERRGFEPGADRRYEAAYFWEERNDWFSDVWTDLNGA 197

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
            +   + G +      P AL  R++   +  GD +LDPF+G+GT+   A    R+ +G++
Sbjct: 198 RQDLAEPGLRERSAAFPFALPYRLINMYSVYGDTVLDPFWGTGTTSVAAAVAGRNSVGVD 257

Query: 253 MKQDYIDIATKRIASVQPL 271
              + +     RI +   L
Sbjct: 258 ADPEVVAAFADRITATPEL 276


>gi|85717732|ref|ZP_01048664.1| prophage LambdaW4, DNA methylase [Nitrobacter sp. Nb-311A]
 gi|85695448|gb|EAQ33374.1| prophage LambdaW4, DNA methylase [Nitrobacter sp. Nb-311A]
          Length = 193

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 196 RNKDGE-KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           + +DG    HPT KP AL++  L   +K G+ ++DPF GSG++   A+   R  +G E+ 
Sbjct: 6   KERDGLLAAHPTPKPVALIADALRDVSKRGEYVVDPFLGSGSTLMAAEATGRICVGNELD 65

Query: 255 QDYIDIATKR 264
             Y+D+A +R
Sbjct: 66  SAYVDVAIRR 75


>gi|57233564|ref|YP_180818.1| DNA methylase [Dehalococcoides ethenogenes 195]
 gi|57224012|gb|AAW39069.1| DNA methylase [Dehalococcoides ethenogenes 195]
          Length = 411

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 102/242 (42%), Gaps = 38/242 (15%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
           K  + +VL  L  +  +L+  DPPYN+   G   +  +          D  ++ +A+  F
Sbjct: 176 KAETFAVL--LDDRKANLVITDPPYNVNYEGSAGKIKN----------DNMAN-DAFYNF 222

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
             A       V+  + +++V  S            +  F++    +W+K + +    GR 
Sbjct: 223 LLAAFQNTEAVMADDASIYVFHSDTEGLNFRRAFSDAGFYLSGCCIWKKQSLV---LGRS 279

Query: 145 -FQNAHETLIWA-SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
            +Q  HE +++    S K + Y+   +                  I    +  +N D   
Sbjct: 280 PYQWQHEPVLYGWKKSGKHQWYSGRKETT----------------IWEFDKPKKNGD--- 320

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPT KP  LL+  +++S+    ++LDPF GSG++    ++  RS   IE+ + + D+  
Sbjct: 321 -HPTMKPIPLLAYPIMNSSMTNTLVLDPFGGSGSTLMACEQADRSCATIELDEKFCDVIV 379

Query: 263 KR 264
           KR
Sbjct: 380 KR 381


>gi|219850185|ref|YP_002464618.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
           aggregans DSM 9485]
 gi|219544444|gb|ACL26182.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aggregans DSM
           9485]
          Length = 345

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 116/300 (38%), Gaps = 67/300 (22%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G+S+ +L++LP   VDL+   PP+ L         D S                 Y  + 
Sbjct: 28  GDSLDLLKRLPDDCVDLVVTSPPFALLRQKAYGNTDQS----------------EYVEWL 71

Query: 86  RAWLLACRRVLKPNGT--LWVIGSYHNIFRIGTMLQ---------NLNFWILNDIVWRKS 134
             +    RRVL+  G+  L + G+Y     + ++ Q          + F++  +  W   
Sbjct: 72  CRFGAEVRRVLRETGSFVLDLGGAYQRGVPVRSLYQYRVLLKMCDEVGFYLAEEFFWYNP 131

Query: 135 NPMP------NFRGRRFQNAHETLIWASPS--PKA-------------KGYTFNYDAL-- 171
             +P      N R  R +++  T+ W S S  PKA             K    N DA   
Sbjct: 132 AKLPSPIEWVNKRKIRVKDSVNTVWWFSKSEWPKADVRQVLAPYSERMKTLLKNPDAFYK 191

Query: 172 ---KAANEDVQ----------MRSDWL-IPICSGSE---RLRNKDGEKLHPTQKPEALLS 214
              + +  D+           + S+ L IP    +    RL    G + HP + P AL  
Sbjct: 192 PKNRPSGHDISKGFGSDNGGAIPSNLLQIPNTESNSSYLRLSKLVGIEAHPARFPAALPE 251

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
             +   T  GD++LD F GS T+G VA++  R +I +E+   Y+  +  R     P   +
Sbjct: 252 FFIKLLTTEGDLVLDIFAGSNTTGKVAEQFGRRWIAMEIDAGYVAGSALRFMEHLPQSEV 311


>gi|189345611|ref|YP_001942140.1| DNA methylase N-4/N-6 domain protein [Chlorobium limicola DSM 245]
 gi|189339758|gb|ACD89161.1| DNA methylase N-4/N-6 domain protein [Chlorobium limicola DSM 245]
          Length = 416

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 107/266 (40%), Gaps = 54/266 (20%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF-SSFEAY-DAFTRAWLLAC 92
           LP  SV L+   PPY              L D  T++   F  S+E+Y +     W   C
Sbjct: 4   LPDSSVHLVITSPPY------------WQLKDYGTENQIGFHDSYESYINNLNLVWS-EC 50

Query: 93  RRVLKPNGTLWV-IGS------YHNIFR-------IGTMLQNLNFWILNDIVWRKSNPMP 138
            RVL P   L + IG       Y+  ++       I    + + F  +  ++W+K     
Sbjct: 51  ERVLHPGCRLCINIGDQFARSVYYGRYKVIPIRTEIIRFCETIGFDYMGAVIWQKVTTTN 110

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNY----------DALKAANEDVQ---MRSDWL 185
              G        +++ + P P+      +Y          DA K A E  +   M ++  
Sbjct: 111 TTGG-------ASIMGSFPYPRNGILKLDYEFILLFKKPGDAPKPAKEQKERSAMSTEEW 163

Query: 186 IPICSGSERLR--NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
               SG        +DG   H    PE L  R++      G+ +LDPF GSGT+   AK 
Sbjct: 164 NTCFSGHWNFAGAKQDG---HIAVFPEELPHRLIRMFAFSGETVLDPFMGSGTTSLAAKN 220

Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQ 269
           L R+ +G E+  ++I IA +++ + Q
Sbjct: 221 LDRNSVGYEINPEFIGIAKEKLRANQ 246


>gi|313143166|ref|ZP_07805359.1| DNA methyltransferase [Helicobacter cinaedi CCUG 18818]
 gi|313128197|gb|EFR45814.1| DNA methyltransferase [Helicobacter cinaedi CCUG 18818]
          Length = 196

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 16/162 (9%)

Query: 116 TMLQNLNFWILNDIVWRKSN--------PMPNFRGRRFQNAHE--TLIWASPSPKAKGYT 165
           ++L++   ++L+  +W ++N          P  R    QN  E  T+      P+     
Sbjct: 26  SILESTPLFLLDLYIWNRTNTTKKLMFGSYPYPRNFYAQNTSEFITIYVKDGKPQNTPQE 85

Query: 166 FNYDALKAANEDVQM-RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
               +  +  E VQ  +  W IPI + ++    K     H    PE +  R++   +  G
Sbjct: 86  LKEQSKLSQKEWVQFTKQIWDIPIPNKADSAFGK-----HAAIMPEIIPYRLIKLYSFIG 140

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           DI+LDPF GSGT+  VAK+L R+FIG E+   Y  +  +++ 
Sbjct: 141 DIVLDPFAGSGTTLKVAKELGRNFIGYEIYPHYKSVIEEKLG 182


>gi|285019155|ref|YP_003376866.1| adn methyltransferase [Xanthomonas albilineans GPE PC73]
 gi|283474373|emb|CBA16874.1| putative adn methyltransferase protein [Xanthomonas albilineans]
          Length = 432

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 38/62 (61%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           LHPT KP  L+ R + +S+K  DI+LDPF GSG++    +K  R    IE+   Y+D+  
Sbjct: 341 LHPTMKPVELVERAVRNSSKTKDIVLDPFGGSGSTLIACEKSGRRARVIELDPKYVDVIV 400

Query: 263 KR 264
           +R
Sbjct: 401 RR 402


>gi|262377930|ref|ZP_06071137.1| DNA methylase [Acinetobacter lwoffii SH145]
 gi|262307142|gb|EEY88298.1| DNA methylase [Acinetobacter lwoffii SH145]
          Length = 304

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 102/273 (37%), Gaps = 53/273 (19%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQL--YRPDHSLVDAVTDSWDKFSS 77
           + +II G+ + +L+ LP  SVDLI   PPY  Q        +P+  +             
Sbjct: 6   ESQIINGDCLEMLKLLPDNSVDLIITSPPYADQRKSTYGGVKPEQYV------------- 52

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLW-------VIGSYHN-IFRIGTMLQNLNFWILNDI 129
            E +    +  L    RVLK +G+         V G  H  +  +   L+   +    + 
Sbjct: 53  -EWFLPIAQQLL----RVLKQSGSFVLNIKEKVVNGERHTYVLELILALKKQGWLWTEEY 107

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT----------------------FN 167
           VW K N  P     RF++  E  +  + + K   Y                         
Sbjct: 108 VWHKKNSFPGKWPNRFRDGWERCLHFNKTKKFNMYQETVMVPMGDWKKTRMKKLSKTDMQ 167

Query: 168 YDALKAANEDVQMRSDWL---IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
            D  K  +   +  S+W+   +               + H    P+ L +  +   +K G
Sbjct: 168 RDESKVGSGFGKNISNWIDRDMAYPDNVLHFATVCNNRNHSAAFPDELPAWFINLFSKEG 227

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           DIILDPF GSGTS  VA  L R  IGIE+ + Y
Sbjct: 228 DIILDPFSGSGTSVRVATNLGRVGIGIEILETY 260


>gi|50843079|ref|YP_056306.1| putative type III restriction-modification system
           [Propionibacterium acnes KPA171202]
 gi|50840681|gb|AAT83348.1| putative type III restriction-modification system
           [Propionibacterium acnes KPA171202]
          Length = 663

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 34/48 (70%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           T KPE LL RI+   + PGDI+LD F GSGT+ AVA+K+ R ++  E+
Sbjct: 395 TPKPERLLERIIHIGSNPGDIVLDVFAGSGTTAAVAQKMGRRWVTCEL 442


>gi|323159624|gb|EFZ45604.1| DNA methylase family protein [Escherichia coli E128010]
          Length = 352

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 39/62 (62%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD+I D F GSG++   A  L R  IG+E++ +  +   +
Sbjct: 283 HPCEKPAEMLQQIISASSRPGDLIADFFMGSGSTVKAALALGRRAIGVELETERFEQTVR 342

Query: 264 RI 265
            +
Sbjct: 343 EV 344



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 36/166 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  ++ LP  SVDLI  DPPY                    + WD  + ++  
Sbjct: 11  ELINADCLEFIQTLPENSVDLIVTDPPY---------------FKVKPEGWD--NQWKGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           D + + WL  C     RVLKP G+L++   +     I  M++   F +LN I+W K  P 
Sbjct: 54  DDYLK-WLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAK--PS 109

Query: 138 PNFRG------RRFQNAHETLIWASP-----SPKAKGYTFNYDALK 172
             + G      R +  A E +++A        PK  GY     ALK
Sbjct: 110 GRWNGCNKESLRAYFPATERILFAEHYQGPYRPKDAGYAAKGSALK 155


>gi|313895572|ref|ZP_07829128.1| DNA (cytosine-5-)-methyltransferase [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975698|gb|EFR41157.1| DNA (cytosine-5-)-methyltransferase [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 421

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/256 (20%), Positives = 108/256 (42%), Gaps = 47/256 (18%)

Query: 20  KDKIIKGNSI--SVLEKL-PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K ++I G+S      E+L  ++ V+L+  DPPY + L     +  +          D  +
Sbjct: 169 KHRVICGDSTLPGTYERLLGSEKVNLVCTDPPYFVALESSSGKIKN----------DDLN 218

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             +AY+ F ++  +A    +  + +++V  +           ++  F +   +VW+K   
Sbjct: 219 DKDAYE-FLKSAFIAFHSAMATDASIYVFYATAKARIFHDAYEDAGFKVGAGLVWKKDRL 277

Query: 137 MPNFRGRRFQNAHETLIWA-SPSPKAKGY-------TFNYDALKAANEDVQMRSDWLIPI 188
           +      ++   HE +IW      + + Y        F +D +K + +D           
Sbjct: 278 VLTRTDWKY--IHEPIIWGWRKDGRHRWYGDQKQTTVFAFDRIKDSKKDG---------- 325

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
           C              HP+ KP  L++ ++   T+   I+LD F GS ++    ++L R  
Sbjct: 326 CG-------------HPSSKPVPLIAYLVKQCTQTNGIVLDGFLGSASTLIACEQLNRIC 372

Query: 249 IGIEMKQDYIDIATKR 264
            G+E++  ++D+A +R
Sbjct: 373 YGVELEPKFVDVAVER 388


>gi|215484232|ref|YP_002326459.1| Modification methylase SmaI [Acinetobacter baumannii AB307-0294]
 gi|213989133|gb|ACJ59432.1| Modification methylase SmaI [Acinetobacter baumannii AB307-0294]
          Length = 348

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 85/218 (38%), Gaps = 65/218 (29%)

Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
           ++   LQ   +++  DI+W K NPMP     R   AHE +   S   K++ Y F++ A+K
Sbjct: 128 KVAFALQADGWYLRQDIIWHKPNPMPESITDRCTKAHEYIFLFS---KSRRYFFDHVAIK 184

Query: 173 -----------AANEDVQMRSDWLIPICSGSERL----RNKDGEKLHPTQKPEA------ 211
                      + N D Q  S   +   +G  +      ++D  K H +++         
Sbjct: 185 EPVAESSIKRLSQNLDQQHGSTRAVMKHNGPMKAVYSRSSRDSFKRHNSKRAAVIPNQAN 244

Query: 212 -------------LLSR----ILVSSTKP------------------------GDIILDP 230
                        LL+R    +   STKP                         D++ DP
Sbjct: 245 GTHRSERLESEYDLLTRNKRSVWQVSTKPYKGAHFATFPMDLIEPCVLAGSRVNDVVFDP 304

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           F GSGT+ AVA    R ++G E+   Y ++  +R+  V
Sbjct: 305 FMGSGTTAAVALMHNRQYLGCELNPQYYELQQERLEKV 342


>gi|291543314|emb|CBL16423.1| DNA modification methylase [Ruminococcus sp. 18P13]
          Length = 167

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 43/68 (63%)

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           KD  K+HP+QKP ++L R++   T  GD+++DP   SG++   A++L R   G E+ +D+
Sbjct: 95  KDIPKIHPSQKPISVLKRLIEIFTDEGDVVIDPCACSGSTLRAARELGRHSYGFEVSKDF 154

Query: 258 IDIATKRI 265
              A K++
Sbjct: 155 YTKACKQM 162


>gi|172041475|ref|YP_001801189.1| putative DNA restriction-modification system, DNA methylase
           [Corynebacterium urealyticum DSM 7109]
 gi|171852779|emb|CAQ05755.1| putative DNA restriction-modification system, DNA methylase
           [Corynebacterium urealyticum DSM 7109]
          Length = 664

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 34/48 (70%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           T KPE LL RI+   + PGDI+LD F GSGT+ AVA+K+ R ++  E+
Sbjct: 396 TPKPERLLERIIHIGSNPGDIVLDVFAGSGTTAAVAQKMGRRWVTCEL 443


>gi|315453689|ref|YP_004073959.1| Modification methylase BamHI [Helicobacter felis ATCC 49179]
 gi|315132741|emb|CBY83369.1| Modification methylase BamHI [Helicobacter felis ATCC 49179]
          Length = 107

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 33/46 (71%)

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           ST+ G+++LDPF G+GT+   AK+L+R FIG E    Y  I+T+++
Sbjct: 2   STEEGEVVLDPFLGTGTTALAAKRLQRHFIGFEKDAQYCQISTEKL 47


>gi|304436350|ref|ZP_07396326.1| methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370619|gb|EFM24268.1| methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 657

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 34/53 (64%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           G KL   +KPE L+ +I   ST PGDI+LD   GSGT+ AVA K+   +IG E
Sbjct: 465 GVKLKNGKKPERLIKQIFDISTDPGDIVLDYHLGSGTTCAVAHKMGLQYIGCE 517


>gi|206890953|ref|YP_002248361.1| modification methylase MjaI [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206742891|gb|ACI21948.1| modification methylase MjaI [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 446

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 197 NKDGEKL--HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           N  GEK   H    PE L  R++   +  G+ +LDPF GSGT+  VA+KL R+ IG E+ 
Sbjct: 186 NFSGEKQDKHLAMFPEELPKRLIKMFSFVGETVLDPFLGSGTTSLVARKLNRNSIGYEIN 245

Query: 255 QDYIDIATKRIASVQ 269
           ++++ I  +++   Q
Sbjct: 246 ENFLSIIKEKLGITQ 260


>gi|302035483|ref|YP_003795805.1| site-specific DNA-methyltransferase N-4/N-6 (phage related)
           [Candidatus Nitrospira defluvii]
 gi|300603547|emb|CBK39877.1| Site-specific DNA-methyltransferase N-4/N-6 (phage related)
           [Candidatus Nitrospira defluvii]
          Length = 469

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 3/102 (2%)

Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           R + K G+ + HP   P AL   ++ + T  GD++ +PF GSGT+   A++  R    +E
Sbjct: 364 RHKGKIGQDIDHPAVFPVALPEFVIEAYTDTGDLVFEPFGGSGTTMLAAQRTGRVCRTVE 423

Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLV 294
           +  +Y+D+A KR     P   + +T+L   ++   VA + LV
Sbjct: 424 IAPEYVDVAIKRFQQNHP--GVPVTLLATGQSFDDVADDRLV 463


>gi|119511905|ref|ZP_01631004.1| DNA methylase N-4/N-6 [Nodularia spumigena CCY9414]
 gi|119463473|gb|EAW44411.1| DNA methylase N-4/N-6 [Nodularia spumigena CCY9414]
          Length = 301

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 2/79 (2%)

Query: 190 SGSERLR--NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           S S  LR    +G K HP + P       +   T  GD++LDPF GS T+G VA+  +R 
Sbjct: 222 SNSAYLRRCKAEGMKPHPARFPSGFAEFFIKFLTDEGDMVLDPFAGSNTTGFVAQTWQRR 281

Query: 248 FIGIEMKQDYIDIATKRIA 266
           +I  E+ +DY+  +  R A
Sbjct: 282 WISFELNEDYVKGSRYRFA 300


>gi|38234465|ref|NP_940232.1| putative DNA methylase [Corynebacterium diphtheriae NCTC 13129]
 gi|38200728|emb|CAE50429.1| Putative DNA methylase [Corynebacterium diphtheriae]
          Length = 613

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 34/48 (70%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           T KPE LL RI+   + PGDI+LD F GSGT+ AVA+K+ R ++  E+
Sbjct: 345 TPKPERLLERIIHIGSNPGDIVLDVFAGSGTTAAVAQKMGRRWVTCEL 392


>gi|188535906|ref|YP_001909392.1| DNA recognition and methylase subunit Mod [Erwinia tasmaniensis
           Et1/99]
 gi|188027010|emb|CAO94796.1| DNA recognition and methylase subunit Mod (type III restriction and
           modification system), similar to LlaFI [Erwinia
           tasmaniensis Et1/99]
          Length = 663

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           R++ G +L   +KPE LL  I+   +   D+ILD   GS T+ AVA K+ R +IGIE + 
Sbjct: 458 RHEGGVELRSGKKPEFLLKTIINHFSNQNDLILDFHLGSATTCAVAHKMGRRYIGIE-QM 516

Query: 256 DYI-DIATKRIASV 268
           DYI DI   R+ +V
Sbjct: 517 DYIKDICIPRMVNV 530


>gi|34762179|ref|ZP_00143186.1| Chromosome partitioning protein parB [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27888140|gb|EAA25199.1| Chromosome partitioning protein parB [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 438

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 124/283 (43%), Gaps = 54/283 (19%)

Query: 20  KDKIIKGNSISV--LEKLPA-KSVDLIFADPPYNLQL---NGQLYRPDHS--------LV 65
           K K++ G+S ++  ++KL A +++DL+  DPPYN+     NG   + D+         L+
Sbjct: 161 KHKLMCGDSTNLEDVKKLVANETMDLMVTDPPYNVNYEATNGNKIKNDNMSSENFYRFLL 220

Query: 66  DAVTDSWDKFSSFEAYDAF-TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
           D   +S++   +  AY  F   +   A R  L+  G           F+I   L     W
Sbjct: 221 DFYKNSFEVMRAGAAYYIFHADSETKAFRGALEEAG-----------FKISQCL----IW 265

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
           + N  V  + +   N+R       HE  ++      A  +  ++       +D++   ++
Sbjct: 266 VKNQFVLSRQDY--NWR-------HEPCLYGWKEGAAHYFIKDFTQDTVIEKDLKAIENY 316

Query: 185 ----LIPICSGSERLRNKDG---------EKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
               LI I    + LR ++            +HPT KP  L++R++ +S+K    ILD F
Sbjct: 317 SKKELINILK--QMLREQESIIRENKPLVNDVHPTMKPIKLIARLIHNSSKKDWNILDLF 374

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
            GSG++   A++L R    +E    Y D+  KR  S+  L  I
Sbjct: 375 GGSGSTLIAAEQLNRKAFLMEYDPKYADVIVKRYRSLGKLDII 417


>gi|323965397|gb|EGB60853.1| DNA methylase [Escherichia coli M863]
 gi|327250326|gb|EGE62045.1| DNA methylase family protein [Escherichia coli STEC_7v]
          Length = 352

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 40/65 (61%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   +  L R  IG+E++ +  +   K
Sbjct: 283 HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKASMALGRRAIGVELETERFEQTVK 342

Query: 264 RIASV 268
            +  +
Sbjct: 343 EVQDL 347



 Score = 44.3 bits (103), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 19/113 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           +I  + +  ++ LP  S+DLI  DPPY  ++ NG                WD ++   E 
Sbjct: 12  LINADCLHFIQSLPDDSIDLIVTDPPYFKVKPNG----------------WDNQWKGDED 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K
Sbjct: 56  YLKWLDHCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAK 107


>gi|3599413|gb|AAC62718.1| site-specific DNA methyltransferase [Cenarchaeum symbiosum]
          Length = 368

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 33/45 (73%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           PE L+SRI+  +TK GD +LDPF G GT+G V+  L+R F GI++
Sbjct: 286 PEDLVSRIVKFATKEGDYVLDPFAGRGTTGIVSACLKRGFTGIDL 330


>gi|82544405|ref|YP_408352.1| DNA adenine methyltransferase encoded by prophage [Shigella boydii
           Sb227]
 gi|81245816|gb|ABB66524.1| putative DNA adenine methyltransferase encoded by prophage
           [Shigella boydii Sb227]
 gi|320184646|gb|EFW59442.1| putative DNA methylase [Shigella flexneri CDC 796-83]
 gi|332094403|gb|EGI99452.1| modification methylase DpnIIB domain protein [Shigella boydii
           3594-74]
          Length = 194

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 39/62 (62%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD+I D F GSG++   A  L R  IG+E++ +  +   +
Sbjct: 125 HPCEKPAEMLQQIISASSRPGDLIADFFMGSGSTVKAALALGRRAIGVELETERFEQTVR 184

Query: 264 RI 265
            +
Sbjct: 185 EV 186


>gi|308186460|ref|YP_003930591.1| hypothetical protein Pvag_0949 [Pantoea vagans C9-1]
 gi|308056970|gb|ADO09142.1| hypothetical protein Pvag_0949 [Pantoea vagans C9-1]
          Length = 346

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 38/53 (71%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A KL R  IG+E++++
Sbjct: 280 HPCEKPADMLEQIINASSRPGDVVADFFMGSGSTIKAAIKLGRFAIGVELEEE 332



 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 23/118 (19%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++   + + VL+ +P  SVDLI  DPPY                    D WD  + ++  
Sbjct: 10  ELFNADCLRVLKTMPDDSVDLIVTDPPY---------------FKVKPDGWD--NQWKGD 52

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
           + + R WL  C     RVLKPNG++++   +     I  M++   F ILN I+W K +
Sbjct: 53  EDYLR-WLDCCLADFWRVLKPNGSIYLFSGHRLASDIEIMMRT-RFNILNHIIWAKPD 108


>gi|159033046|gb|ABW87807.1| SpcM [Streptomyces spectabilis]
          Length = 267

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 106/260 (40%), Gaps = 62/260 (23%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW--DKFSSFEAYDA 83
           G+S+++LE +P  SV  +   PP+     G     D     A +  W    F  FE    
Sbjct: 24  GDSLALLEGVPDGSVRAVVCSPPFE----GPQLIADEDRAGACSSDWLMPFFGQFE---- 75

Query: 84  FTRAWLLACRRVLKPNGT-------LWV----------IGSYHNIFRIGTMLQNLNFWIL 126
                     RVL+P+G        LW+           G+ H + + G  L   +F+  
Sbjct: 76  ----------RVLRPDGCVAFELGGLWLSDAPGKAVQHAGAVHALAKAGWRLVQ-DFYYY 124

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD--ALKAANEDVQMRSDW 184
           N  +    NP P    R   +   T IW      A+ +  +YD  AL+       +R + 
Sbjct: 125 NPQLL---NPEPEGAARAPDSV--TPIWV----MARTHDVHYDVSALRHPARAPFVRGNL 175

Query: 185 LIPICSG-SERLRNKD--GEKLHP------TQKPEALLSRILVSSTKPGDIILDPFFGSG 235
           L    SG  +R   K      LHP      T  PE  +  +    T+PGD++LDPF GSG
Sbjct: 176 LEFDTSGVYDRAYEKTLAETSLHPYVDRWPTVVPELFVELL----TRPGDLVLDPFAGSG 231

Query: 236 TSGAVAKKLRRSFIGIEMKQ 255
            +   A++L R ++G E+ +
Sbjct: 232 ATCFAAERLGRRWLGFELDR 251


>gi|237719964|ref|ZP_04550445.1| gp10 [Bacteroides sp. 2_2_4]
 gi|229450516|gb|EEO56307.1| gp10 [Bacteroides sp. 2_2_4]
          Length = 256

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 104/262 (39%), Gaps = 59/262 (22%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           +FE    + K + + V+  LP  S+DL+  DPP+ +                    WDK 
Sbjct: 5   VFEKDITLYKADCLEVMPLLPESSIDLVLCDPPFGI----------------TASQWDKI 48

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS--YHNIFRIGTMLQNLNFWILNDIVWRK 133
                   F++ W    RRV K N    + GS  + ++ R G + +    W     VW K
Sbjct: 49  I------PFSKMW-EEIRRVRKDNAPTALFGSEPFSSLLRCGNLAEFKYDW-----VWEK 96

Query: 134 SNPMPNFRGRRFQ--NAHETLIWASPSPKAKGYTFNYDALKAAN--EDVQMR-SDW--LI 186
           S    NF   + Q   AHE +     S    G T  Y  ++     E+   R S+W  + 
Sbjct: 97  SK-ASNFLLAKKQPLKAHELI-----SIFCNGRTPYYPIMEEGEPYENRTKRGSNWTGVN 150

Query: 187 PICSGSERLRNK----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
            + + + R  NK                +G+ +H  QKP ALL  ++ + TK GD +LD 
Sbjct: 151 KVPNPTFRNENKGTRYPRSVKYFKTAESEGKTIHVNQKPIALLKYLIKTYTKEGDTVLDF 210

Query: 231 FFGSGTSGAVAKKLRRSFIGIE 252
             GS ++        R  I IE
Sbjct: 211 ASGSMSTAIACIHTNRKCICIE 232


>gi|254169291|ref|ZP_04876123.1| DNA methylase domain protein [Aciduliprofundum boonei T469]
 gi|289596730|ref|YP_003483426.1| DNA methylase N-4/N-6 domain protein [Aciduliprofundum boonei T469]
 gi|197621768|gb|EDY34351.1| DNA methylase domain protein [Aciduliprofundum boonei T469]
 gi|289534517|gb|ADD08864.1| DNA methylase N-4/N-6 domain protein [Aciduliprofundum boonei T469]
          Length = 849

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 114/257 (44%), Gaps = 24/257 (9%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K KII G+S  VLE    K  +++   PPY    N + Y    +L + + D ++     +
Sbjct: 591 KMKIIVGDSYKVLELFKNKITNMV-TSPPY---YNAREYSKWDNLFNYLNDIYNII--LK 644

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT------MLQNLNFWILNDIVWRK 133
           A+DA  +  +         +    ++ S     RI        + +   F +L+DI+W K
Sbjct: 645 AHDALIKGGVFFYNIGDIFDNENIIVKSKMGEKRIPLGAYTILIFEKAGFELLDDIIWYK 704

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKG-YTFNYDALKAANED---VQMRSDWL--IP 187
             P  N   R   +   T  +  P+   +  + F  +     N+D   ++++S+ +   P
Sbjct: 705 GEPQSN---RHKNDGMYTPYYQRPTNCYEHMFIFKKEGDVIINKDKDEIKIKSNIIKFAP 761

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           +    +   N+ G   H    P+ +    + + T  GDI+LDPF GSGT+  VA    R 
Sbjct: 762 VVKIGKGGENRYG---HTAPFPKMIPLLSISTFTNQGDIVLDPFSGSGTTPIVASINGRK 818

Query: 248 FIGIEMKQDYIDIATKR 264
            IGIE+ ++Y  ++ K+
Sbjct: 819 AIGIEINKEYALLSIKK 835


>gi|225018791|ref|ZP_03707983.1| hypothetical protein CLOSTMETH_02741 [Clostridium methylpentosum
           DSM 5476]
 gi|224948519|gb|EEG29728.1| hypothetical protein CLOSTMETH_02741 [Clostridium methylpentosum
           DSM 5476]
          Length = 264

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 105/282 (37%), Gaps = 47/282 (16%)

Query: 5   NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL 64
           +S A+ +N  ++      +   + I+ L  LP  SVD++  DPPY    N          
Sbjct: 3   DSPALGQNVPNLNPEPSGLYLMDGIAGLRSLPEHSVDMLLTDPPYGTTRN---------- 52

Query: 65  VDAVTDSWD-KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
                  WD      E ++A         R  +KP+G +           +G    NL+ 
Sbjct: 53  ------YWDVPLPLPELWEA--------VRWAVKPSGAVLFFAQCPYDKVLGA--SNLSM 96

Query: 124 WILNDIVWRKSNPMPNFRGRR--FQNAHETLIWASPSPKAKGYTFNYDALK-----AANE 176
            +  + VW KS        RR   +     L++    P    Y   ++  K     A+  
Sbjct: 97  -LRYEWVWYKSRCTGFLNARRAPLKKTENILVFYRRLPL---YNPQFEQGKPYKKIASQR 152

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKL---------HPTQKPEALLSRILVSSTKPGDII 227
           D        +   SGSE  R   G  L         HPTQKP  L   ++ + T PG+++
Sbjct: 153 DQSPNYGKFVRSGSGSEDGRRFPGNLLSFQTVAHTVHPTQKPVELCEYLIKTYTAPGEVV 212

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            D   GSGT+   A    R FI  E    +   AT+RI   +
Sbjct: 213 ADICAGSGTTAIAALNTGREFICFETAPAFYGPATERITQAR 254


>gi|57505513|ref|ZP_00371440.1| adenine specific DNA methyltransferase (hpaim) [Campylobacter
           upsaliensis RM3195]
 gi|57016060|gb|EAL52847.1| adenine specific DNA methyltransferase (hpaim) [Campylobacter
           upsaliensis RM3195]
          Length = 272

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 96/246 (39%), Gaps = 37/246 (15%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLAC-- 92
           L   S DLI   PPYN+ +            ++  DS    +S+E+Y  FT+ W+  C  
Sbjct: 35  LSKNSCDLIITSPPYNVGIE----------YNSNEDS----NSYESYLEFTQKWIENCYF 80

Query: 93  ------RRVL-----KPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                 R  L     K  G    +G+      + T+ + + +   + I+W + N      
Sbjct: 81  WAKDGARFCLNIPLDKNKGGQQSVGA-----DLTTLAKQIGWKYHSTIIWNEGNISRRTA 135

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS--DWLIPICSGSERLRNKD 199
              + +A    + A        Y   +        D+       W   + S +   + + 
Sbjct: 136 WGSWLSASAPYVIAPVELIVVLYKGAWKKKHKGESDISKEEFMAWTNGLWSFNGESKKRI 195

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G   HP   P  L  R +   +  GD++ DPF GSGT+   +    R FIGIE+ + Y +
Sbjct: 196 G---HPAPFPRELPKRCIKLFSYVGDVVFDPFCGSGTTMIESYLNNRQFIGIELDRQYCE 252

Query: 260 IATKRI 265
           ++ KR 
Sbjct: 253 LSKKRF 258


>gi|322368971|ref|ZP_08043538.1| DNA methylase N-4/N-6 domain-containing protein [Haladaptatus
           paucihalophilus DX253]
 gi|320551702|gb|EFW93349.1| DNA methylase N-4/N-6 domain-containing protein [Haladaptatus
           paucihalophilus DX253]
          Length = 143

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 36/49 (73%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           HPTQKPE  L +I+ +++   D++LD F GSGT+ AVA++  R+++G E
Sbjct: 85  HPTQKPEEHLRKIVWATSDKDDLVLDSFGGSGTTYAVAEQFGRNWVGTE 133


>gi|313618487|gb|EFR90489.1| DNA methylase [Listeria innocua FSL S4-378]
          Length = 411

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 93/230 (40%), Gaps = 38/230 (16%)

Query: 38  KSVDLIFADPPYNLQLNGQL--YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRV 95
           K  +L   DPPYN+   G     + DH   D        F  F   DAF     +    V
Sbjct: 187 KKANLCVTDPPYNVNYEGTAGKIKNDHMGNDV-------FYQF-LLDAF-----INIEEV 233

Query: 96  LKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNAHETLIW 154
           L  + +++V  +    F       +  F++    +W+K + +    GR  +Q  HE +++
Sbjct: 234 LADDASIYVFHADTEGFNFRKAFSDAGFYLSGCCIWKKDSLV---LGRSPYQWQHEPVLF 290

Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
                K KG    Y   K               I    +  RN D    HPT KP  LL+
Sbjct: 291 GW---KKKGKHQWYTGRKETT------------IWEFDKPKRNGD----HPTMKPIPLLA 331

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
             +++S+    I+LDPF GSG++    ++  R     E+ + + D+  KR
Sbjct: 332 YPILNSSMTNTIVLDPFGGSGSTLIACEQSERICYTAELDEKFCDVIIKR 381


>gi|304436375|ref|ZP_07396351.1| DNA (cytosine-5-)-methyltransferase [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304370644|gb|EFM24293.1| DNA (cytosine-5-)-methyltransferase [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 421

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 58/282 (20%), Positives = 117/282 (41%), Gaps = 50/282 (17%)

Query: 20  KDKIIKGNSI--SVLEKL-PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K ++I G+S      E+L   + V+L+  DPPY + L     +  +          D  +
Sbjct: 169 KHRVICGDSTLPETYERLLGGEKVNLVCTDPPYFVALESSSGKIKN----------DDLN 218

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             +AY+ F ++   A   V+  + +++V  +           ++  F +   +VW+K   
Sbjct: 219 DKDAYE-FLKSAFTAFHSVMAADASIYVFYATAKARIFHDAYEDAGFKVGAGLVWKKDRL 277

Query: 137 MPNFRGRRFQNAHETLIWA-SPSPKAKGY-------TFNYDALKAANEDVQMRSDWLIPI 188
           +      ++   HE +IW      + + Y        F +D +K + +D           
Sbjct: 278 VLTRTDWKY--IHEPIIWGWRKDGRHRWYGDQKQTTVFAFDRIKDSKKDG---------- 325

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
           C              HP+ KP  L++ ++   T+   ++LD F GS ++    ++L R  
Sbjct: 326 CG-------------HPSSKPVPLIAYLVKQCTQTNGVVLDGFLGSASTLIACEQLGRIC 372

Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAF 290
            G+E++  ++D+A +R    +  GN E   L  +R   R+ +
Sbjct: 373 YGVELEPKFVDVAVERYIQSKD-GNAEDVFL--ERDGERIPY 411


>gi|293433587|ref|ZP_06662015.1| DNA methylase [Escherichia coli B088]
 gi|291324406|gb|EFE63828.1| DNA methylase [Escherichia coli B088]
          Length = 352

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 40/65 (61%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  IG+E++ +  +   +
Sbjct: 283 HPCEKPAEMLHQIISASSRPGDLVADFFMGSGSTIKAAMSLGRRAIGVELETERFEQTVR 342

Query: 264 RIASV 268
            +  +
Sbjct: 343 EVQDL 347



 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 25/117 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I  + +  ++ LP  SVDLI  DPPY  ++ NG                WD  + ++ 
Sbjct: 11  ELINADCLEFIQTLPENSVDLIVTDPPYFKVKPNG----------------WD--NQWKG 52

Query: 81  YDAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
            D + + WL  C     RVLKP G+L++   +     I  M++   F +LN I+W K
Sbjct: 53  DDDYLK-WLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAK 107


>gi|42561467|ref|NP_975918.1| adenine-specific DNA-methyltransferase [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|42492966|emb|CAE77560.1| Adenine-specific DNA-methyltransferase [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
          Length = 247

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 68/158 (43%), Gaps = 26/158 (16%)

Query: 5   NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKS--VDLIFADPPYNLQLNGQLYRPDH 62
           N + INEN         KI   +S  ++E+    S  V+ I  DPPYN+  +       H
Sbjct: 83  NEIYINENI--------KIYNADSYKIVEQFINNSTKVNHIITDPPYNISQSNNF----H 130

Query: 63  SLVDAVTD-----SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
           +L  A         WD       YD    +W+    ++L  NG++ +  SY  I  I   
Sbjct: 131 TLRSANRQGLNFGKWD-------YDFDLISWIKPYSKLLDKNGSMIIFCSYKYISFIIEE 183

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
           L++    I + I W K+NPMP    RR+    E  IWA
Sbjct: 184 LESNMLEIKDVIKWVKTNPMPRNVNRRYVQDTEYAIWA 221


>gi|13542244|ref|NP_111932.1| adenine-specific DNA methylase [Thermoplasma volcanium GSS1]
 gi|14325677|dbj|BAB60580.1| TVG1487993 [Thermoplasma volcanium GSS1]
          Length = 316

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 50/84 (59%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           R+   + +HP   P +L  +++   +  G++++DPF GSGT+   A+   R+ +G ++++
Sbjct: 74  RDIRDKTVHPATFPISLAKQVIELFSHEGELVVDPFVGSGTTLVAARDSNRNAVGFDLQE 133

Query: 256 DYIDIATKRIASVQPLGNIELTVL 279
            YI +  +R+++ + +GN +   +
Sbjct: 134 KYIKLCAERLSTQRIVGNAQQVAI 157


>gi|298373714|ref|ZP_06983703.1| DNA (cytosine-5-)-methyltransferase domain protein [Bacteroidetes
           oral taxon 274 str. F0058]
 gi|298274766|gb|EFI16318.1| DNA (cytosine-5-)-methyltransferase domain protein [Bacteroidetes
           oral taxon 274 str. F0058]
          Length = 628

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 39/62 (62%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           + TQKPEALL RI+ +S+  G +I D F GSG +  VA KL R FI  ++  + I+ A  
Sbjct: 296 YATQKPEALLERIIKASSNEGMLIADFFGGSGVTATVAHKLGRRFIHCDIGINSIETARD 355

Query: 264 RI 265
           R+
Sbjct: 356 RL 357


>gi|307307475|ref|ZP_07587209.1| DNA methylase N-4/N-6 domain protein [Shewanella baltica BA175]
 gi|306910150|gb|EFN40584.1| DNA methylase N-4/N-6 domain protein [Shewanella baltica BA175]
          Length = 356

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 24/146 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+S+ +L K+P  S+ LI  DPPY+      +Y       D +      F+  + Y 
Sbjct: 28  LAHGDSLELLRKIPDNSISLILTDPPYHATKKKNIYG------DTL------FAQDQHYL 75

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            +   + +  RRVLK NG+L+         R+  +L ++ F IL+ +VW K N  P F G
Sbjct: 76  EWMNEYAIEWRRVLKQNGSLFCYCDSSMSARL-EVLFSVEFNILSHVVWTKPNE-PGFDG 133

Query: 143 ----------RRFQNAHETLIWASPS 158
                     R++    E +I+A P+
Sbjct: 134 WKGKMKKESLRQWYGHSERIIFAEPA 159



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 45/76 (59%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L   + + +  GDI+LD F GSG++   A  L R  + IE+++ +++  ++
Sbjct: 268 HPAEKPLDMLKHAIEACSHEGDIVLDCFAGSGSTAVAALSLGRRSVSIEIEEPWVEGISE 327

Query: 264 RIASVQPLGNIELTVL 279
           R+ +++ L   +L  L
Sbjct: 328 RLKAIEKLDEEDLANL 343


>gi|124005746|ref|ZP_01690585.1| chromosome partitioning protein [Microscilla marina ATCC 23134]
 gi|123988814|gb|EAY28420.1| chromosome partitioning protein [Microscilla marina ATCC 23134]
          Length = 494

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 1/67 (1%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IAT 262
           HPT KP  +++  L+ +T  GDI+LD F GSGT+   A++ RR   G+E +  Y+  I T
Sbjct: 402 HPTPKPVRMIADALLDTTNEGDIVLDCFLGSGTTLMAAERTRRICYGVEYEPGYMQGILT 461

Query: 263 KRIASVQ 269
           + I   Q
Sbjct: 462 RFIHHCQ 468


>gi|328954500|ref|YP_004371834.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
           11109]
 gi|328454824|gb|AEB10653.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
           11109]
          Length = 302

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 112/280 (40%), Gaps = 63/280 (22%)

Query: 22  KIIKGNS--ISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           ++I G++  +S LE    +S+ L+   PPY NL+                 ++ D+   F
Sbjct: 7   RLINGDARDLSFLED---ESIHLVVTSPPYWNLK--------------HYNENPDQLGHF 49

Query: 79  EAYDAFTRAWLLACR---RVLKPNGTL-WVIGSY---------HNIF----RIGTMLQNL 121
           + Y+ F        R   RV  P G L  V+G           H +F     I    + +
Sbjct: 50  KNYETFLNELEKVWRQVFRVFVPGGRLVCVVGDVCVARRAFGRHLVFPLHADICVTCRKI 109

Query: 122 NFWILNDIVWRK----SNPMPN---FRGRRFQ-------NAHETLIWASPSPKAKGYTFN 167
            F  LN I+W K    S  + N   F G+ ++       +    L+   P    K   + 
Sbjct: 110 GFDNLNPIIWHKIANASYEVANGSKFLGKPYEPNAIIKNDMEFILMQRKPGGYRKPSDYQ 169

Query: 168 YDALKAANEDVQ--MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
            +  K + E      +  W IP  S           + HP   P  L +R++   +   D
Sbjct: 170 RNESKISKEKFNQWFKQIWHIPGAS----------TRHHPAPFPLELATRLIRMFSFVND 219

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
            +LDPF GSGT+   A + +R+ IGIE+  DY  +A K +
Sbjct: 220 TVLDPFCGSGTTMIAAMRTKRNSIGIEVDPDYCKLAAKYL 259


>gi|317501632|ref|ZP_07959824.1| site-specific DNA-methyltransferase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316896975|gb|EFV19054.1| site-specific DNA-methyltransferase [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 668

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 39/64 (60%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           + TQKPEALL+RI+ SS+    I+ D F GSG + AVA KL R FI  ++  + +     
Sbjct: 343 YSTQKPEALLNRIITSSSNENMIVADFFGGSGVTAAVANKLARKFIHCDIGLNSVQTTRD 402

Query: 264 RIAS 267
           R+ +
Sbjct: 403 RLVA 406


>gi|300937239|ref|ZP_07152086.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 21-1]
 gi|300457695|gb|EFK21188.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 21-1]
          Length = 349

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 36/51 (70%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           HP +KP  +L +I+ +S++PGD++ D F GSG++  VA  L R  IG+E++
Sbjct: 283 HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKVALALGRRAIGVELE 333



 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 70/166 (42%), Gaps = 36/166 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  +  LP  SVDLI  DPPY                    + WD  + ++  
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPY---------------FKVKPEGWD--NQWKGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           D + + WL  C     RVLKP G+L++   +     I  M++   F +LN I+W K  P 
Sbjct: 54  DDYLK-WLDQCLAQFWRVLKPVGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAK--PS 109

Query: 138 PNFRG------RRFQNAHETLIWASP-----SPKAKGYTFNYDALK 172
             + G      R +  A E +++A        PK  GY     ALK
Sbjct: 110 GRWNGCNKESLRAYFPATERILFAEHYQGPYRPKDAGYAAKGSALK 155


>gi|291562208|emb|CBL41024.1| DNA modification methylase [butyrate-producing bacterium SS3/4]
          Length = 259

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 108/281 (38%), Gaps = 75/281 (26%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSF 78
           K+ +   + I  L  LP  SVD++  DPPY    N                 WD      
Sbjct: 13  KEGLFLMDGIEGLRSLPKHSVDMLLTDPPYGTTRN----------------YWDVPLPLP 56

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLW---------VIGS-------YHNIF--RIGTMLQN 120
           E ++A   A        +KPNG +          V+G+       Y  I+    GT   N
Sbjct: 57  ELWEAVKWA--------VKPNGAVLFFAQCPFDKVLGASNLAMLRYEWIWYKERGTGFLN 108

Query: 121 LNFWIL----NDIVWRKSNPM--PNFR-GRRFQNAHETLIWASPSPKAKGYTFNYDALK- 172
            N   L    N +V+ K +P+  P F  G+ +   H             G + NY   + 
Sbjct: 109 ANRAPLKKSENILVFYKKSPVYNPQFTYGKPYARVHSR----------SGTSSNYGKFER 158

Query: 173 ---AANEDVQMRSDWL-IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
               +N+  +   + L +P  SG           +HPTQKP  L   ++ + T PG+++ 
Sbjct: 159 QGSESNDGRRYPGNVLFVPTVSGG----------IHPTQKPVELCEYLIRTYTHPGELVA 208

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           D   GSGT+   A    R F+  E    +   A++RI + Q
Sbjct: 209 DICVGSGTTAIAAINTERRFVCFETAPSFYAAASERIRAAQ 249


>gi|163741620|ref|ZP_02149011.1| DNA methyltransferase [Phaeobacter gallaeciensis 2.10]
 gi|161385354|gb|EDQ09732.1| DNA methyltransferase [Phaeobacter gallaeciensis 2.10]
          Length = 400

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 40/66 (60%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G   H    P+ L    + ++  P  ++LDPF G+GTS  VA+KL R  IGI++  +YI+
Sbjct: 332 GRSGHYAAFPQDLCDVPIRATCPPSGVVLDPFVGTGTSLVVARKLGRHGIGIDLSDEYIN 391

Query: 260 IATKRI 265
           +A +R+
Sbjct: 392 LARQRL 397



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 24/167 (14%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +I+ +++  L  +P+  +D     PPY  Q   +                 +  +   Y 
Sbjct: 74  LIQSDALDALRGMPSNIIDCAITSPPYWQQRAYE------------AGGIGEEQTVGEYL 121

Query: 83  AFTRAWLLACRRVLKPNGTLWV--IGSYHNIFRIGT-------MLQNLNFWILNDIVWRK 133
              RA      R+LKP G+LW+    +YH     G        ++++  + I ND++W K
Sbjct: 122 TDLRAVFQQVHRLLKPTGSLWINIDDTYHQRSMQGIPWRLVLGLVEDCGWLIRNDVIWSK 181

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           +    N    RF + HE L       K++ Y  ++DA++ A +  ++
Sbjct: 182 TGGSLNRSSNRFSHRHEHLFHLV---KSEDYYHDHDAIRLAAKPARL 225


>gi|332884368|gb|EGK04635.1| hypothetical protein HMPREF9456_03411 [Dysgonomonas mossii DSM
           22836]
          Length = 265

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 36/195 (18%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           ++K  KG+ I +++ LP +SVD+I  DPPY    N +L R                  F+
Sbjct: 5   RNKSYKGDCIELMKYLPDESVDVICTDPPYLYLKNQKLDR-----------------HFD 47

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
             + F +      +RVLK +G + + G   + +R  T+L +L F    +I+W KS     
Sbjct: 48  ETEYFNQV-----KRVLKKDGFIILFGRGTSFYRWNTILADLGFAFKEEIIWDKSYCSSP 102

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
                    HET+   S   K  G T N    K     ++M+   +  IC   +RLR+  
Sbjct: 103 LMA--MSRVHETV---SIHTKGNG-TIN----KVKVPYLEMKGHDIPSICQDIKRLRS-- 150

Query: 200 GEKLHPTQKPEALLS 214
              L+ T+  +A+L+
Sbjct: 151 --VLNNTKSFDAVLA 163


>gi|168181366|ref|ZP_02616030.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum Bf]
 gi|168184214|ref|ZP_02618878.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum Bf]
 gi|182672690|gb|EDT84651.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum Bf]
 gi|182675431|gb|EDT87392.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum Bf]
          Length = 268

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 44/73 (60%)

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           +R   K+  K+HPTQKP ALL +++   T  GD+++DP  G G++     +L RS  G E
Sbjct: 182 KRDSKKEYPKVHPTQKPIALLKQLIEIFTDEGDVVIDPVAGGGSTLRACMELNRSSYGFE 241

Query: 253 MKQDYIDIATKRI 265
           + +++   A +++
Sbjct: 242 VSKEFYKKAQEQM 254


>gi|167462734|ref|ZP_02327823.1| hypothetical protein Plarl_09255 [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322382813|ref|ZP_08056656.1| adenine-specific DNA methylase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321153196|gb|EFX45643.1| adenine-specific DNA methylase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 247

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 58/268 (21%), Positives = 113/268 (42%), Gaps = 40/268 (14%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++II  +   +  ++P  SVD+I  D PY                +   + WD     + 
Sbjct: 6   NQIIHADCFDIFPEIPDGSVDMILCDLPY----------------ETTQNEWDVGLPLDL 49

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                  W    +R++K NG   ++ +    F     + N+N  +  + +W K+NP    
Sbjct: 50  ------LWS-HYKRIIKQNGA--ILLTAQPPFDKVLGMSNINM-LRYEWIWVKNNPTGFL 99

Query: 141 RGRRFQ-NAHETLI-----WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
              +    +HE ++       + +P+        +  K  + D     +  + I  G + 
Sbjct: 100 NANKMPLKSHENILVFYRRLPTYNPQKTQGHPPVNHYKKLSSDGSNYGNTKVGIEGGGQT 159

Query: 195 LR--------NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            R         +D ++ HPTQKP AL   ++ + T  G +++D   G  T+   A K +R
Sbjct: 160 DRFPTDVLYFQRDQKRFHPTQKPVALFEYLIKTYTNEGALVVDNCAGVATTAVAAIKNKR 219

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNI 274
           +FI IE ++ ++ I  +R+ +VQ + N+
Sbjct: 220 NFIAIEKEEKWVKIGKQRLQNVQLVMNL 247


>gi|325982147|ref|YP_004294549.1| DNA methylase N-4/N-6 domain-containing protein [Nitrosomonas sp.
           AL212]
 gi|325531666|gb|ADZ26387.1| DNA methylase N-4/N-6 domain protein [Nitrosomonas sp. AL212]
          Length = 565

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 36/50 (72%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           T KPE+LL RI+  +T   D++LD F GSGT+GAVA K+ R +I +E+ +
Sbjct: 321 TPKPESLLRRIIHLATNSNDLVLDSFAGSGTTGAVAHKMGRRWIMVELGE 370



 Score = 36.2 bits (82), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 65/151 (43%), Gaps = 25/151 (16%)

Query: 19  WKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + +++I G+++  L+ L A+    V  IF DPPYN                +    +D  
Sbjct: 45  FDNRLIFGDNLLALKALEAEFAGKVKCIFIDPPYN--------------TGSAFTHYDDG 90

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN----LNFWILNDIVW 131
                + +  R  L   RR+L  +GTLW+    +    +  +       +NF  + ++VW
Sbjct: 91  VEHSIWLSLMRDRLEIIRRLLSEDGTLWITIDDNEAHYLKVLCDEVFGRVNF--VANVVW 148

Query: 132 RKSNPMPNFRGRRFQNAHE-TLIWASPSPKA 161
           +K+   P        ++H+  L++A   PKA
Sbjct: 149 QKAY-GPRSNAHLISDSHDHILVFAKDKPKA 178


>gi|237750705|ref|ZP_04581185.1| adenine specific DNA methyltransferase [Helicobacter bilis ATCC
           43879]
 gi|229373795|gb|EEO24186.1| adenine specific DNA methyltransferase [Helicobacter bilis ATCC
           43879]
          Length = 270

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 106/264 (40%), Gaps = 29/264 (10%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
            N+ F +K+  +  ++      L   S+DLI   PPYN+ +            ++  DS 
Sbjct: 6   HNTSFSYKNTTLFNHTCLDKTILQENSLDLIITSPPYNVGIE----------YNSNEDS- 54

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI---------GSYHNIFRIGTMLQNLNF 123
              +S+E+Y  F++ W+  C    K +G  + +         GS      + T+ + + +
Sbjct: 55  ---NSYESYLEFSQKWIENCYFWAK-DGARFCLNIPLDKNKGGSQSVGADLTTLAKQIGW 110

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS- 182
              + I+W + N         + +A    + A        Y   +        D+     
Sbjct: 111 KYHSTIIWNEGNISRRTAWGSWLSASAPYVIAPVELILVLYKGAWKKKYKGESDISKEEF 170

Query: 183 -DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
             W   + S +   + + G   HP   P  L  R +   +  GD++ DPF GSGT+   +
Sbjct: 171 MAWTNGLWSFNGESKKRIG---HPAPFPRELPKRCIKLFSYVGDVVFDPFCGSGTTMIES 227

Query: 242 KKLRRSFIGIEMKQDYIDIATKRI 265
               R FIGIE+ + Y +++ KR 
Sbjct: 228 YLNNRQFIGIELDKAYCELSKKRF 251


>gi|53711930|ref|YP_097922.1| DNA methyltransferase [Bacteroides fragilis YCH46]
 gi|52214795|dbj|BAD47388.1| DNA methyltransferase [Bacteroides fragilis YCH46]
          Length = 339

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 40/66 (60%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +    L++  +   T   D++LDPF GS T+G  A+KL+R +I  E+K+DYI+ A  
Sbjct: 258 HPARMNGGLINFFINFLTDEDDLVLDPFSGSNTTGYCAEKLKRKWISFEIKEDYIEQAIL 317

Query: 264 RIASVQ 269
           R +  +
Sbjct: 318 RFSEQE 323


>gi|317049517|ref|YP_004117165.1| DNA methylase N-4/N-6 domain-containing protein [Pantoea sp. At-9b]
 gi|316951134|gb|ADU70609.1| DNA methylase N-4/N-6 domain protein [Pantoea sp. At-9b]
          Length = 391

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 87/200 (43%), Gaps = 30/200 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++ G+++ VL +LP+ S+D I   PPY      + Y  ++  +    D  D         
Sbjct: 62  LMCGDALDVLAQLPSDSIDFIMTSPPY---WGKREY--ENGGIGLEVDPMD--------- 107

Query: 83  AFTRAWLLAC---RRVLKPNGTLWV-IGSYHN-------IFRIGTMLQNLNFWIL-NDIV 130
            F R     C   +RVLKP G+ W+ +G  +         +R+   L +   WIL N ++
Sbjct: 108 -FVRNLAEICLQIKRVLKPTGSFWLNLGDTYKDKALLGLPWRVAFELTDNQGWILRNSVI 166

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W K     +    R  N HE +       K KGY +N DA++    D ++ +  ++   +
Sbjct: 167 WNKLKGGMDNSADRLGNVHENIFHF--VKKNKGYYYNADAIRTKPRDAKVVNGSVVS-AT 223

Query: 191 GSERLRNKDGEKLHPTQKPE 210
           G   +R K   +L  T  P+
Sbjct: 224 GVSGVRYKRQIELSTTLTPQ 243



 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 213 LSRILVSSTKPGD-IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           L RI + +T P + I LDPF G+G++   A +L R  +GI++ + Y+ + T+R 
Sbjct: 334 LCRIPILATCPENGIALDPFSGTGSTLIAAYELGRKSVGIDISERYLKLTTERF 387


>gi|313631431|gb|EFR98768.1| DNA methylase [Listeria seeligeri FSL N1-067]
          Length = 203

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 93/215 (43%), Gaps = 31/215 (14%)

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVI--GSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           E +D F      + ++V+  +  ++V    SY   F     L N+   + +  +W K+ P
Sbjct: 4   EQFDMFLAKVFQSYQKVMAGHAAIYVFHPSSYQIEFENSMKLANIQ--VRSQCIWIKNYP 61

Query: 137 MPNFRGRRFQNAHETLIWAS---PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
              +   R+Q  HE + +A     SP   G             D +  + W      G E
Sbjct: 62  SFGWSQYRWQ--HEPVFYAHLKGESPFWYG-------------DRKQTTTWRDHSYLGEE 106

Query: 194 R------LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                   R+ +   +HPTQKP  LL+  + +S+K GD I D F GSG++   A++L R 
Sbjct: 107 ASTIWEIARDSNNTYIHPTQKPLDLLAIPMRNSSKKGDTIADFFGGSGSTLLTAEQLGRI 166

Query: 248 FIGIEMKQDYIDIATKRIAS---VQPLGNIELTVL 279
              +E+   + D   +R  +   ++P+   +LT +
Sbjct: 167 CYTMELDPKFCDAIKQRFEAYTGIKPVLMQQLTTI 201


>gi|195182280|emb|CAP72353.1| DNA methylase [Escherichia coli]
 gi|195182288|emb|CAP74071.1| DNA methylase [Escherichia coli]
          Length = 83

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 35/51 (68%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  IG+E++
Sbjct: 14  HPCEKPAEMLRQIITTSSRPGDLVADFFMGSGSTVKAAMALGRRAIGVELE 64


>gi|256840184|ref|ZP_05545692.1| adenine-specific DNA methylase [Parabacteroides sp. D13]
 gi|256737456|gb|EEU50782.1| adenine-specific DNA methylase [Parabacteroides sp. D13]
          Length = 674

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 9/95 (9%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE--------MK 254
           ++ TQKPE LL RI+ +S+  GD++ D F GSGT+ AVA++L R +I  +        M+
Sbjct: 333 VYATQKPEKLLERIIKASSDEGDLVCDFFGGSGTTAAVAERLGRRWITTDIGKPATLVMR 392

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
           + +ID   K     Q +G+ +       +   R+ 
Sbjct: 393 KRFIDQEVKPFL-YQAIGDYQKEAFQNNKQYKRIG 426



 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 82/177 (46%), Gaps = 37/177 (20%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKS-----------VDLIFADPPYN-- 50
           KN   IN+      EW +++I G+++ V++ L A             VDLI+ DPP++  
Sbjct: 55  KNEQVINK------EWMNRLIYGDNLLVMQALLAGDETTGLPSLRGKVDLIYIDPPFDSK 108

Query: 51  ------LQLNGQLYRPDHSLVD--AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL 102
                 + L G       ++++  A +D+W   +   +Y       L+  R +L   G++
Sbjct: 109 ADYRTKINLPGVDIEQKPTVIEQFAYSDTWQDGTV--SYLKMLYPRLVLMRELLSEKGSI 166

Query: 103 -----WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
                W IG+Y  +  +  +L   NF   N+I+W+ +    + + +++  +H+T+ +
Sbjct: 167 YVHIDWHIGAYLKVI-MDDVLGKENF--KNEIIWKSAVGDTSNKNKKYIKSHDTIFF 220


>gi|29566484|ref|NP_818050.1| gp77 [Mycobacterium phage Che9d]
 gi|29425209|gb|AAN07995.1| gp77 [Mycobacterium phage Che9d]
          Length = 217

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 2/62 (3%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPT KP  L+  I+ ++  P  ++ DPF GSG++   A+ L R  IG+E+++ Y ++  K
Sbjct: 147 HPTPKPIGLMETIIAAA--PDGVVADPFAGSGSTLVAARNLGRKAIGVELEEKYCELIAK 204

Query: 264 RI 265
           R+
Sbjct: 205 RL 206


>gi|255523619|ref|ZP_05390586.1| DNA methylase N-4/N-6 domain protein [Clostridium carboxidivorans
           P7]
 gi|255512674|gb|EET88947.1| DNA methylase N-4/N-6 domain protein [Clostridium carboxidivorans
           P7]
          Length = 307

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 83/187 (44%), Gaps = 16/187 (8%)

Query: 77  SFEAYDAFTRAW--LLACRRVLKPNGTLWVI------GSYHNIFRIGTMLQNLNFWILND 128
           SF  YD F           RVLKP   L  I       ++  ++ I    +       + 
Sbjct: 104 SFSDYDCFRYNIDDFKEKARVLKPGCFLVEIIPSENENNFEYLYEIKKYAKECGLIYYSK 163

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR-SDWLIP 187
           + W+K N + N  GR+ +N+ + +I++    KA+    +        E+  M   + ++P
Sbjct: 164 VTWKKGNFVSN-TGRKAKNSQDVMIFSKG--KARAMRMDQKKTLKTGENCYMSGCNGMLP 220

Query: 188 ICSGSERL-RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                  + +NK   ++H ++ P +L  +IL   T  G+++LD F GSG  G  A   +R
Sbjct: 221 TMFDVPPVSKNK---RIHQSELPTSLCEQILEFVTYEGEVVLDSFAGSGAVGEAALNKKR 277

Query: 247 SFIGIEM 253
           + I IE+
Sbjct: 278 NCILIEL 284


>gi|296535574|ref|ZP_06897755.1| prophage LambdaMc01 [Roseomonas cervicalis ATCC 49957]
 gi|296264090|gb|EFH10534.1| prophage LambdaMc01 [Roseomonas cervicalis ATCC 49957]
          Length = 111

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 40/69 (57%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           R +D   +H TQKP A + R + +S+  G  + +PF GSGT+   A+   R+   +E+  
Sbjct: 10  RGQDAATIHGTQKPVACMRRPIENSSSAGQAVYEPFCGSGTTLIAAEMTGRACHALELDP 69

Query: 256 DYIDIATKR 264
            Y+D+A +R
Sbjct: 70  AYVDVAVQR 78


>gi|118576380|ref|YP_876123.1| DNA modification methylase [Cenarchaeum symbiosum A]
 gi|3599390|gb|AAC62696.1| site-specific DNA methyltransferase [Cenarchaeum symbiosum]
 gi|118194901|gb|ABK77819.1| DNA modification methylase [Cenarchaeum symbiosum A]
          Length = 358

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 37/57 (64%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           PE L+SRI+  +T+ GD +LDPF G GT+G V+  L+R F GI++    +D   + +
Sbjct: 280 PEDLVSRIVKFATREGDYVLDPFAGRGTTGIVSACLKRGFTGIDLYPANVDRTRRNV 336


>gi|319957548|ref|YP_004168811.1| DNA methylase n-4/n-6 domain protein [Nitratifractor salsuginis DSM
           16511]
 gi|319419952|gb|ADV47062.1| DNA methylase N-4/N-6 domain protein [Nitratifractor salsuginis DSM
           16511]
          Length = 263

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 6/97 (6%)

Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
           D L   N   +M  +W+        R   K+  K+HPTQKP  LL+ ++   T  GD ++
Sbjct: 167 DKLPKFNNRGRMIYNWM------EWRRDGKEIPKIHPTQKPVNLLAHLVQLFTDEGDTVI 220

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           DP  GSG++     +L R+  G E+ +D   +AT+++
Sbjct: 221 DPVAGSGSTLRACFELNRNGYGFEVSRDMYRLATEKM 257


>gi|119508956|ref|ZP_01628108.1| putative type II DNA modification enzyme (methyltransferase)
           [Nodularia spumigena CCY9414]
 gi|119466485|gb|EAW47370.1| putative type II DNA modification enzyme (methyltransferase)
           [Nodularia spumigena CCY9414]
          Length = 437

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 41/63 (65%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +PT+K    + RI+++S+ PGD++LD F GSGT+ AVA++L R +I I+     I    +
Sbjct: 309 YPTEKNLDFIKRIILASSNPGDLVLDAFAGSGTTVAVAEELGRKWIAIDNSSLAITTIVQ 368

Query: 264 RIA 266
           R+ 
Sbjct: 369 RLV 371


>gi|8346570|emb|CAB93763.1| hypothetical protein [Enterobacteria phage phiP27]
          Length = 312

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 39/65 (60%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  IG+E++    +   +
Sbjct: 243 HPCEKPAEMLRQIITTSSRPGDLVADFFMGSGSTVKAAMALGRRAIGVELETGRFEQTVR 302

Query: 264 RIASV 268
            +  +
Sbjct: 303 EVQDL 307


>gi|193064388|ref|ZP_03045470.1| DNA methylase N-4/N-6 domain protein [Escherichia coli E22]
 gi|192929050|gb|EDV82662.1| DNA methylase N-4/N-6 domain protein [Escherichia coli E22]
          Length = 124

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 41/65 (63%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  +G+E++ +  +   K
Sbjct: 57  HPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALGRRALGVELESERFNQTVK 116

Query: 264 RIASV 268
            ++ +
Sbjct: 117 EVSEL 121


>gi|163785231|ref|ZP_02179904.1| type II restriction-modification system methylation subunit
           [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879499|gb|EDP73330.1| type II restriction-modification system methylation subunit
           [Hydrogenivirga sp. 128-5-R1-1]
          Length = 306

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 39/62 (62%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           H    PE L  RI+   +  G+ +LDPF GSGT+  VA +L R+ +G E+ ++++D+  K
Sbjct: 121 HQAMFPEELPKRIIKMFSFVGETVLDPFLGSGTTAKVAVELGRNAVGYEVNENFLDVIIK 180

Query: 264 RI 265
           +I
Sbjct: 181 KI 182


>gi|18249888|ref|NP_543076.1| putative DNA methylase [Enterobacteria phage phiP27]
 gi|18152355|emb|CAC83542.1| putative DNA methylase [Enterobacteria phage phiP27]
          Length = 352

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 38/62 (61%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  IG+E++    +   +
Sbjct: 283 HPCEKPAEMLRQIITTSSRPGDLVADFFMGSGSTVKAAMALGRRAIGVELETGRFEQTVR 342

Query: 264 RI 265
            +
Sbjct: 343 EV 344



 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 23/116 (19%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  ++ LP  SVDLI  DPPY                    + WD  + ++  
Sbjct: 11  ELINADCLEFIQTLPENSVDLIVTDPPY---------------FKVKPEGWD--NQWKGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           D + + WL  C     RVLKP G+L++   +     I  M++   F +LN I+W K
Sbjct: 54  DDYLK-WLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAK 107


>gi|256848295|ref|ZP_05553738.1| LOW QUALITY PROTEIN: DNA methylase [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714893|gb|EEU29871.1| LOW QUALITY PROTEIN: DNA methylase [Lactobacillus coleohominis
           101-4-CHN]
          Length = 521

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 9/116 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQ---MRSDWLIPICSG---SERLRNKDGEKLHPTQKPEALL 213
           K KG +F    +K    D Q    +S W  P  +G   +  L+   G+K+    K E ++
Sbjct: 281 KPKGDSFEV-YVKERESDYQGEKAKSLWEKPEYTGQNATHTLKTLFGKKVFTYPKSEFVM 339

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRIASV 268
             ++   T P D+++D F GS T+ AVA K+ R FIGIE + DYI+ I+  R+  V
Sbjct: 340 RDLIQVCTNPNDLVIDFFMGSATTPAVAMKMHRRFIGIE-QMDYINTISVPRLQKV 394


>gi|325953907|ref|YP_004237567.1| DNA methylase N-4/N-6 domain protein [Weeksella virosa DSM 16922]
 gi|323436525|gb|ADX66989.1| DNA methylase N-4/N-6 domain protein [Weeksella virosa DSM 16922]
          Length = 337

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 32/175 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+   ++  ++ KLP++S+D+I  DPPY    N +L R        V D    FS     
Sbjct: 3   KLYNCDNAELMAKLPSESIDVICTDPPYLYLKNQKLER--------VFDEQKFFSE---- 50

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                     C+R+L   G + + G   + +R  T+L +L F    +I+W KS+      
Sbjct: 51  ----------CKRLLTKKGFIVLFGRGESFYRWNTILADLGFTFKEEIIWNKSHCTSPL- 99

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
             R    HET+   S   K KG T N    K     ++M+S  L  I +  +RL+
Sbjct: 100 -MRLSRVHETI---SIFTKGKG-TIN----KVKVPYLEMKSHDLDSIITDIKRLK 145



 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 5/74 (6%)

Query: 203 LHPTQKPEALLSRILV-----SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           +HPTQKP  LL R+L      +  K   ++LDPF GS ++      +    I  E+ ++Y
Sbjct: 258 IHPTQKPVRLLERLLALVIPQNKDKEDIVVLDPFGGSFSTMEAVYNMGMKGISCEIDEEY 317

Query: 258 IDIATKRIASVQPL 271
            +    RI ++QP+
Sbjct: 318 FENGKNRIENLQPI 331


>gi|260577043|ref|ZP_05845022.1| ParB domain protein nuclease [Rhodobacter sp. SW2]
 gi|259020713|gb|EEW24030.1| ParB domain protein nuclease [Rhodobacter sp. SW2]
          Length = 443

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 195 LRNKDG---EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           +R+K G      HP   P AL+  +L + + PGD+I +PF GSGT    A++  R    +
Sbjct: 356 MRHKGGLGAAGSHPAVFPVALVEAVLTAFSDPGDLIYEPFCGSGTQIIAAERAGRLCFAM 415

Query: 252 EMKQDYIDIATKR 264
           EM   Y D+A +R
Sbjct: 416 EMDPVYCDVAVRR 428


>gi|254884129|ref|ZP_05256839.1| gp10 [Bacteroides sp. 4_3_47FAA]
 gi|255013645|ref|ZP_05285771.1| putative site-specific DNA-methyltransferase [Bacteroides sp.
           2_1_7]
 gi|254836922|gb|EET17231.1| gp10 [Bacteroides sp. 4_3_47FAA]
          Length = 256

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 105/268 (39%), Gaps = 59/268 (22%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           + K + + V+  LP  S+DL+  DPP+ +                    WDK        
Sbjct: 12  LYKADCLEVMPLLPESSIDLVLCDPPFGI----------------TASQWDKII------ 49

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGS--YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
            F++ W    RRV K N    + GS  + ++ R G + +    W     VW KS    NF
Sbjct: 50  PFSKMWE-EIRRVRKDNAPTALFGSEPFSSLLRCGNLAEFKYDW-----VWEKSK-ASNF 102

Query: 141 RGRRFQ--NAHETLIWASPSPKAKGYTFNYDALKAAN--EDVQMR-SDW--LIPICSGSE 193
              + Q   AHE +     S    G T  Y  ++     E+   R S+W  +  + + + 
Sbjct: 103 LLAKKQPLKAHELI-----SIFCNGRTPYYPIMEEGEPYENRTKRGSNWTGVNKVPNPTF 157

Query: 194 RLRNK----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           R  NK                +G+ +H  QKP ALL  ++ + TK GD +LD   GS ++
Sbjct: 158 RNENKGTRYPRSVKYFKTAESEGKTIHVNQKPVALLKYLIKTYTKEGDTVLDFASGSMST 217

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRI 265
                   R  I IE    +     +RI
Sbjct: 218 AIACIHTNRKCICIEKDDMHFSRGEERI 245


>gi|10954486|ref|NP_039775.1| DNA modification methylase [Methanothermobacter thermautotrophicus]
 gi|266584|sp|P29568|MTHZ_METTF RecName: Full=Modification methylase MthZI; Short=M.MthZI; AltName:
           Full=N-4 cytosine-specific methyltransferase MthZI
 gi|44647|emb|CAA48447.1| ZIM [Methanothermobacter thermautotrophicus]
 gi|44659|emb|CAA47651.1| mthZIM [Methanothermobacter thermautotrophicus]
          Length = 355

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 111/270 (41%), Gaps = 30/270 (11%)

Query: 32  LEKLPAKSVDLIFADPPYNL-QLNGQLYRP-DHSLVDAVTDSWDKFSSFE-AYDAFTRAW 88
           + +L  KS++L+   PPY + ++  +L+   +  + + + D  D   S+   ++   + W
Sbjct: 15  MNELKDKSINLVVTSPPYPMVEIWDRLFSELNPKIEETLIDEEDGLRSYNLMHEELEKVW 74

Query: 89  LLACRRVLKPNGTLWV-IGS-----------YHNIFRIGTMLQNLNFWILNDIVWRK-SN 135
                RV  P G + + IG            Y N  R      +  + +L  I+WRK SN
Sbjct: 75  H-EVDRVTAPGGVVIINIGDATRKIGKKFQLYPNHVRTIDFFFDRGYQVLPFIIWRKQSN 133

Query: 136 PMPNFRGR-------RFQNAHE-TLIWASPSPK----AKGYTFNYDALKAANEDVQMRSD 183
               F G           + HE  LI+    P+     +      ++     E  Q  SD
Sbjct: 134 KPTKFMGSGMLPPNAYVTHEHEYILIFRKEGPRQFKTEEERKLRRESAYFWEERNQWFSD 193

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
               +   S+RL +K+  K      P  L  R++   +  GD +LDPF G+GT+   A  
Sbjct: 194 VWTDLTGVSQRLNHKNLRK-RAAAYPFELAYRLINMYSIMGDWVLDPFLGTGTTMIAAAC 252

Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
             R+ IG E+  ++ D+   RI     L N
Sbjct: 253 AGRNSIGYELDHNFKDLIESRINETLKLSN 282


>gi|315168838|gb|EFU12855.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX1341]
          Length = 398

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 94/230 (40%), Gaps = 29/230 (12%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           +  +  DL+  DPPYN+   G+          A+    D  ++ E Y +F R+   +   
Sbjct: 185 MDGEKADLLITDPPYNVNYEGKTEA-------ALKIKNDNKTASEFY-SFLRSAFSSTYD 236

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
            LK   + +V  +   +      L +  F +  +++W K++ +   +   +Q  HE  ++
Sbjct: 237 NLKEGASFYVWYASSEVINFVNSLVDSQFMVKQELIWLKNSFVLGRQDYHWQ--HEPCLY 294

Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
                K  G    Y   K          D+  PI +           K HPT KP  L  
Sbjct: 295 GW---KKDGSHRWYGDRKQTT-----VLDFDKPIAN-----------KEHPTMKPIPLFD 335

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
             + +S+K GD ILD F GSGT+    ++  R    +E+   Y+D+   R
Sbjct: 336 YQIKNSSKKGDKILDIFGGSGTTMIACEQNDRQAYLMELDPKYVDVIINR 385


>gi|313667116|gb|ADR73007.1| M.BsiWI [Bacillus sp. NEBM184]
          Length = 353

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 40/63 (63%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           H    PE L    ++++  P  I+LDPF G+GT+  VAK+  R  IGIE+ ++Y+++A +
Sbjct: 288 HFAPYPEDLCKIPILATCPPDGIVLDPFAGTGTTNKVAKQNGRKSIGIEISEEYLEVAEE 347

Query: 264 RIA 266
           R +
Sbjct: 348 RCS 350



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 44/167 (26%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK-------FSSF 78
           G+++ VL+++P  S+D     PPY                      W K           
Sbjct: 28  GDALQVLKEIPDDSIDFCMTSPPY----------------------WQKRKYSGGGIGLE 65

Query: 79  EAYDAFTRAWLLACR---RVLKPNGTLWV-IG-SYHNI------FRIGTMLQNLNFWIL- 126
           + Y  F +  LL C+   RVLKP G+ W+ +G SY +       +R+   L +   WIL 
Sbjct: 66  KDYRDFIKNLLLICKEIYRVLKPTGSFWLNLGDSYKDKKLLGIPWRVAIALMDEQNWILR 125

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
           ND++W K     +    +  NAHE +       K K Y ++ DA+++
Sbjct: 126 NDVIWNKVKGGMDNSKDKLGNAHEHIFHFV---KNKKYYYDVDAIRS 169


>gi|224372986|ref|YP_002607358.1| DNA methylase [Nautilia profundicola AmH]
 gi|223590019|gb|ACM93755.1| DNA methylase [Nautilia profundicola AmH]
          Length = 352

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 111/265 (41%), Gaps = 36/265 (13%)

Query: 38  KSVDLIFADPPYNL--QLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRV 95
           +S+D I   PPY +    +   ++ +  + +       + +    ++   + W   C RV
Sbjct: 20  ESIDFILTSPPYPMIEMWDETFFKLNQEIKNQFNKKNYRLAYELMHNELNKTWK-ECYRV 78

Query: 96  LKPNGTLWV-IGS-----------YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN-FRG 142
           LKP G + + IG            + N  +I   +QNL    L  I+WRK++  PN F G
Sbjct: 79  LKPGGIIAINIGDATRTLNKNFQLFTNHVKIIEYMQNLGMQSLPPIIWRKTSNKPNKFMG 138

Query: 143 RRF--QNA-----HETLIWASPSPKAKGYTFNYDALKAANEDV---QMRSDWLIPICSGS 192
                 NA     HE ++      K K   FN + +    +     + R+ W   I    
Sbjct: 139 SGMLPVNAYVTLEHEYILIFRKGEKRK---FNKNEIIRRRKSAFFWEERNKWFSDIWKDI 195

Query: 193 ERLRNKDGEKLHPTQK------PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
               N+  +K + T +      P  L  R++   +   D + DPF G+GT+   +  L R
Sbjct: 196 VG-ENQTIDKYYKTNRDRNAAFPLELSLRLIHMFSIYEDTVFDPFLGTGTTTIASAVLGR 254

Query: 247 SFIGIEMKQDYIDIATKRIASVQPL 271
           + IG E+   + ++  +RI +++ +
Sbjct: 255 NSIGYEIDTSFKNLIKERINNIKTI 279


>gi|313895718|ref|ZP_07829274.1| DNA (cytosine-5-)-methyltransferase [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975844|gb|EFR41303.1| DNA (cytosine-5-)-methyltransferase [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 421

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 58/282 (20%), Positives = 116/282 (41%), Gaps = 50/282 (17%)

Query: 20  KDKIIKGNSI--SVLEKL-PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K ++I G+S      E+L   + V+L+  DPPY + L     +  +          D  +
Sbjct: 169 KHRVICGDSTLPETYERLLGGEKVNLVCTDPPYFVALESSSGKIKN----------DDLN 218

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             +AY+ F ++   A    +  + +++V  +           ++  F +   +VW+K   
Sbjct: 219 DKDAYE-FLKSAFTAFHSAMATDASIYVFYATAKARIFHDAYEDAGFKVGAGLVWKKDRL 277

Query: 137 MPNFRGRRFQNAHETLIWA-SPSPKAKGY-------TFNYDALKAANEDVQMRSDWLIPI 188
           +       ++  HE +IW      + + Y        F +D +K + +D           
Sbjct: 278 V--LTRTDWKYIHEPIIWGWRKDGRHRWYGDQKQTTVFAFDRIKDSKKDG---------- 325

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
           C              HP+ KP  L++ ++   T+   I+LD F GS ++    ++L R  
Sbjct: 326 CG-------------HPSSKPVPLIAYLIKQCTQTNGIVLDGFLGSASTLIACEQLNRIC 372

Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAF 290
            G+E++  ++D+A +R    +  GN E   L  +R   R+ +
Sbjct: 373 YGVELEPKFVDVAVERYIQSKD-GNAEDVFL--ERDGERIPY 411


>gi|313898088|ref|ZP_07831627.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. HGF2]
 gi|312957116|gb|EFR38745.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. HGF2]
          Length = 416

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 96/229 (41%), Gaps = 36/229 (15%)

Query: 38  KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK 97
           K  +L+  DPPYN+   G   +  +  ++      D F  F   DA+TR +       + 
Sbjct: 187 KKANLVVTDPPYNVNYEGSAGKIKNDNMEN-----DAFYQF-LLDAYTRMY-----ESMA 235

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNAHETLIWA- 155
            + +++V  +            +  F++    +W+K + +    GR  +Q  HE  ++  
Sbjct: 236 DDASIYVFHADTEGLNFRRAFADAGFYLSGCCIWKKQSLV---LGRSPYQWMHEPCLFGW 292

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
             S K + YT   +                  I    +  +N D    HPT KP  LL+ 
Sbjct: 293 KKSGKHQWYTGRKETT----------------IWEFDKPKKNGD----HPTMKPIPLLAY 332

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            +++S+    ++LDPF GSG++    ++  R    IE+ + + D+  KR
Sbjct: 333 PIMNSSMTNSLVLDPFGGSGSTLIACEQTGRICYTIELDEKFCDVIVKR 381


>gi|283786281|ref|YP_003366146.1| prophage DNA adenine methylase [Citrobacter rodentium ICC168]
 gi|282949735|emb|CBG89354.1| putative prophage DNA adenine methylase [Citrobacter rodentium
           ICC168]
          Length = 350

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 41/65 (63%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  IG+E++ +  +   +
Sbjct: 283 HPCEKPADMLKQIISASSRPGDVVADFFMGSGSTLKAAIDLGRKAIGVELETERFNQTVE 342

Query: 264 RIASV 268
            I ++
Sbjct: 343 EIRAL 347



 Score = 43.9 bits (102), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 38/167 (22%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I  + +  +  LP  S+DLI  DPPY  ++ NG                WD  + ++ 
Sbjct: 11  ELINADCLHYIATLPDNSIDLIVTDPPYFKVKPNG----------------WD--NQWKG 52

Query: 81  YDAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            + + R WL  C     RVLKP G+L++   +     I  ++++  F ILN I+W K  P
Sbjct: 53  DEDYLR-WLDRCLAEFWRVLKPAGSLYLFCGHRLAADIEILMRD-RFSILNHIIWAK--P 108

Query: 137 MPNFRG------RRFQNAHETLIWASP-----SPKAKGYTFNYDALK 172
              + G      R +  A E +++A        PK  GY      LK
Sbjct: 109 SGRWNGCNKESLRAYFPATERVLFAEHYQGPCKPKDDGYAAKCGELK 155


>gi|328954607|ref|YP_004371941.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
           11109]
 gi|328454931|gb|AEB10760.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
           11109]
          Length = 309

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 106/272 (38%), Gaps = 67/272 (24%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +++ II G+S + +  +P  S+ L+   PPYN                 VT  +D++ S 
Sbjct: 50  YENSIILGSSEN-MTLIPDNSLHLMITSPPYN-----------------VTKEYDQYLSL 91

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR---------IGTMLQNLNFWILNDI 129
           + Y    +       RVL   G   V  +  N+ R         +  ++  + F +  +I
Sbjct: 92  KEYLQLLQRVFSETYRVLTNGGRACV--NIANLGRQPYLPLSDFVSAIMLEIGFQMRGEI 149

Query: 130 VWRK--------------SNPMPNFRGRRFQNAHE-TLIWASPS-----PKAKGYTFNYD 169
           +W K              S   P  R     + HE  L++A  S     P+ +  T + +
Sbjct: 150 IWNKGAGAGVSMAWGSWRSASAPVLR-----DVHEYILVFAKGSFRRKKPRGRENTISKE 204

Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
                        +W   I + +     K G   HP   P  L  R++   T   D+ILD
Sbjct: 205 QFM----------EWTKSIWTMNPESAKKVG---HPAPFPIELPYRLIQLYTFTEDVILD 251

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           PF GSGT+   A K  R +IG E   +Y+ +A
Sbjct: 252 PFMGSGTTAIAALKAGRKYIGYENNPEYVKLA 283


>gi|261879519|ref|ZP_06005946.1| DNA (cytosine-5-)-methyltransferase [Prevotella bergensis DSM
           17361]
 gi|270333836|gb|EFA44622.1| DNA (cytosine-5-)-methyltransferase [Prevotella bergensis DSM
           17361]
          Length = 350

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 115/265 (43%), Gaps = 39/265 (14%)

Query: 32  LEKLPAKSVDLIFADPPYNL--QLNGQLYRPDHSLVDAVTDSWDKFSSFEA-YDAFTRAW 88
           + ++  KSVDL+   PPY +    +  L + + ++++ + +  +K  +FE  +    + W
Sbjct: 1   MMQIEDKSVDLVVTSPPYPMIEMWDEILGKQNPNILECLENEPEK--AFEMMHQELDKVW 58

Query: 89  LLACRRVLKPNGTLWV-IGS-----------YHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             + R V+KP G L + IG            Y+N  RI     +  F  L +I+WRK   
Sbjct: 59  KESFR-VIKPGGFLCINIGDATRTINGKFALYNNHSRITKACIDFGFVGLPNIIWRKQTN 117

Query: 137 MPN-FRGRRFQ--NAHETLI--WASPSPKAKGYTFNYDALKAANEDV---------QMRS 182
            PN F G       A+ TL   W     K     F     K+ANE +         + R+
Sbjct: 118 APNKFMGSGMLPCGAYVTLEHEWILIFRKGDKRIF-----KSANEKLARMKSSFFWEERN 172

Query: 183 DWLIPI--CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
            W   +    G+++   K   +      P  +  R++   ++ GD+ILDPF G+GT+   
Sbjct: 173 VWFSDVWDIKGTKQNLQKSKTRERSAAFPFEIPYRLINMFSQKGDMILDPFLGTGTTMQA 232

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRI 265
           A    R+  G E+  ++  I  + I
Sbjct: 233 AIVCGRNSCGYEIDANFEQIIREGI 257


>gi|323186686|gb|EFZ72011.1| DNA methylase family protein [Escherichia coli RN587/1]
          Length = 191

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 39/62 (62%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  IG+E++ +  +   +
Sbjct: 125 HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAALALGRRAIGVELETERFEQTVR 184

Query: 264 RI 265
            +
Sbjct: 185 EV 186


>gi|317008913|gb|ADU79493.1| type II DNA modification [Helicobacter pylori India7]
          Length = 252

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 96/246 (39%), Gaps = 28/246 (11%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
           SVLE       DL    PPYNL +  Q                D F +++ Y  + + WL
Sbjct: 18  SVLETFEKGFYDLCVTSPPYNLSIEYQ--------------GSDDFRAYDDYLNWCKNWL 63

Query: 90  LACRRVLKPNGTLWV----IGSYHNIFRIG---TMLQNLNFW-ILNDIVWRKSN-PMPNF 140
             C    K    L +      + H    +G   T++     W   N I+W +SN      
Sbjct: 64  KNCYFWGKEQARLCLNVPLDTNKHGKQSLGADITIVAKECGWKYQNTIIWNESNISRRTA 123

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G   Q +    I    +P      F  +  K   +   M  +  +   +G      +  
Sbjct: 124 WGSWLQASAPYAI----APVELIVVFYKNEYKRKKQTSTMSKEEFLLYTNGLWNFSGESK 179

Query: 201 EKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E++++Y +
Sbjct: 180 KRLKHPAPFPRELPRRCIQLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEIEKEYCE 239

Query: 260 IATKRI 265
           ++ KRI
Sbjct: 240 LSKKRI 245


>gi|295087509|emb|CBK69032.1| DNA modification methylase [Bacteroides xylanisolvens XB1A]
          Length = 322

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 3/83 (3%)

Query: 184 WLIPICSGSERLRNKDGEK-LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           W  P  +GSERL  K+G K +H  QKP   +  I+ SS++  D+I +PF G  +    A 
Sbjct: 238 WREPPLNGSERL--KEGNKAIHFNQKPLKFMELIINSSSEEHDVIWEPFGGLFSGILAAN 295

Query: 243 KLRRSFIGIEMKQDYIDIATKRI 265
           KL R   G E+ +D  D A +R+
Sbjct: 296 KLNRMAYGAEINKDVFDYAKQRL 318


>gi|19549035|ref|NP_599080.1| hypothetical protein SfVp48 [Enterobacteria phage SfV]
 gi|19483779|gb|AAL89450.1| unknown [Enterobacteria phage SfV]
          Length = 350

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 41/65 (63%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  +G+E++ +  +   K
Sbjct: 283 HPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALGRQALGVELESERFNQMVK 342

Query: 264 RIASV 268
            ++ +
Sbjct: 343 EVSEL 347



 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 19/113 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           +I  + +  ++ LP  S+DLI  DPPY  ++ NG                WD ++   E 
Sbjct: 12  LINADCLHFIQSLPDDSIDLIVTDPPYFKVKPNG----------------WDNQWKGDED 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K
Sbjct: 56  YLKWLDHCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAK 107


>gi|291622001|emb|CAX65034.1| gp53 protein [Vibrio phage VP58.5]
          Length = 163

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 63/140 (45%), Gaps = 23/140 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY- 81
           +   +   +L+ LP  SVDLI  DPPY        +R      DA  + WD  + F A+ 
Sbjct: 14  VFNADCSQLLKTLPDNSVDLIATDPPY--------FRVKQ---DAWDNQWDDEAEFLAWL 62

Query: 82  -DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
            D     W     RVLKP+G+L++  S     R   ++    F +LN IVWRK N +   
Sbjct: 63  DDILFDLW-----RVLKPSGSLYLFCSDRLAARTEVLIAE-RFNVLNHIVWRKENGVHKR 116

Query: 141 RG----RRFQNAHETLIWAS 156
                 RRF    E +I+A 
Sbjct: 117 HRKEGLRRFCPQTERIIFAE 136


>gi|125974233|ref|YP_001038143.1| DNA methylase N-4/N-6 [Clostridium thermocellum ATCC 27405]
 gi|125714458|gb|ABN52950.1| DNA methylase N-4/N-6 [Clostridium thermocellum ATCC 27405]
          Length = 411

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 106/247 (42%), Gaps = 36/247 (14%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           +  K  +L+  DPPYN+    +  +  +   D + D  ++F +F  Y AFT  +      
Sbjct: 183 MDGKKANLVVTDPPYNVAYEAKAGKIQN---DNLKD--EEFYNF-LYKAFTNMY-----D 231

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNAHETLI 153
            ++ + +++V  +           + + F++    +W K + +    GR  +Q  HE ++
Sbjct: 232 AMEKDASIYVFHADTEGLNFRKAFKAVGFYLSGVCIWAKQSLV---LGRSPYQWKHEPVL 288

Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL 213
           +     K +G    Y   K +             I S     +N     LHPT KP AL 
Sbjct: 289 FGW---KKEGRHNWYSDRKQST------------IWSFDRPSKNA----LHPTMKPVALC 329

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           +  + +S+    I+LDPF GSG++    ++  R    IE+ + Y D+  KR   ++ +G 
Sbjct: 330 AYPIQNSSMSNCIVLDPFGGSGSTLIACEQTNRICYTIELDEKYADVIVKRY--IEQVGT 387

Query: 274 IELTVLT 280
            E   L 
Sbjct: 388 DEEVFLV 394


>gi|191173171|ref|ZP_03034703.1| DNA methylase [Escherichia coli F11]
 gi|300992750|ref|ZP_07180027.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 200-1]
 gi|190906556|gb|EDV66163.1| DNA methylase [Escherichia coli F11]
 gi|300305246|gb|EFJ59766.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 200-1]
 gi|324010839|gb|EGB80058.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 60-1]
          Length = 350

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 41/65 (63%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  +G+E++ +  +   K
Sbjct: 283 HPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALGRRALGVELESERFNQTVK 342

Query: 264 RIASV 268
            ++ +
Sbjct: 343 EVSEL 347



 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 19/113 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           +I  + +  ++ LP  S+DLI  DPPY  ++ NG                WD ++   E 
Sbjct: 12  LINADCLHFIQSLPDDSIDLIVTDPPYFKVKPNG----------------WDNQWKGDEN 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K
Sbjct: 56  YLKWLDHCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAK 107


>gi|320159453|ref|YP_004172677.1| putative N-4 cytosine-specific methyltransferase [Anaerolinea
           thermophila UNI-1]
 gi|319993306|dbj|BAJ62077.1| putative N-4 cytosine-specific methyltransferase [Anaerolinea
           thermophila UNI-1]
          Length = 278

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 116/271 (42%), Gaps = 47/271 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+I G+S+++ E +P +SV L+   PPY                +A  D    +SS++ Y
Sbjct: 6   KLIIGSSVNMPE-IPDESVHLVVTSPPY---------------FNAPFDYKGLYSSYQNY 49

Query: 82  DAFTRAWLLACRRVLKPNGTLWVI--------GSYHNIFRIGT-MLQNLNFWILNDIVWR 132
               +       RVL  NG ++V+        G    I    T +  +  F   + I+W+
Sbjct: 50  LEMLKQVAREAYRVLA-NGRIFVLNIDDMLVDGEKFPIVADATRIFLDAGFRYRDRIIWK 108

Query: 133 KSNPMPNFR-----GRRFQNAHETLIWASPSPKA-----KGYTFNY-----DALKAANED 177
           K  P    R     G   QN +    +     ++     KG  F+Y     D  +A+  +
Sbjct: 109 K--PEGYLRISRRSGVLLQNPYPMYFYPDNLLESIIIFQKG-RFDYKSVPQDVREASKIN 165

Query: 178 VQ--MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
           ++    + W + +      L N   EK      PE L  R +   +  G+ +LDPF GSG
Sbjct: 166 IKEFQENKWYMTLWEMVNVLPNSPLEK-DIAAFPEELPYRCIQLFSYVGETVLDPFCGSG 224

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           T+  VA++L R+ IGIE+ +  I I T ++ 
Sbjct: 225 TTMKVARQLGRNSIGIEINEALIPIITTKVG 255


>gi|299145512|ref|ZP_07038580.1| DNA (cytosine-5-)-methyltransferase [Bacteroides sp. 3_1_23]
 gi|298516003|gb|EFI39884.1| DNA (cytosine-5-)-methyltransferase [Bacteroides sp. 3_1_23]
          Length = 271

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 48/94 (51%), Gaps = 12/94 (12%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ--- 255
           +GE  HPTQKP  L   ++ + + PGDIILD   GSG+    A    RSFIGIE  +   
Sbjct: 157 EGEVYHPTQKPVELGRYLIRTFSNPGDIILDNACGSGSFLLSAILENRSFIGIEKNEDVL 216

Query: 256 -------DYIDIATKRIASVQPLGNIELTVLTGK 282
                  DYI I   RI+  + L   E+T  T K
Sbjct: 217 LHRIQPTDYIKICMDRIS--ETLKREEVTPATRK 248


>gi|189499041|ref|YP_001958511.1| DNA methylase N-4/N-6 domain-containing protein [Chlorobium
           phaeobacteroides BS1]
 gi|189494482|gb|ACE03030.1| DNA methylase N-4/N-6 domain protein [Chlorobium phaeobacteroides
           BS1]
          Length = 441

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 39/67 (58%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           H    PE L  R++      GD +LDPF GSGT+   A+ L R+ +G E+  ++++I+ +
Sbjct: 206 HIAMFPEELPRRLIKMFAFEGDTVLDPFMGSGTTNLAARNLGRNSVGYEINSEFVEISKQ 265

Query: 264 RIASVQP 270
           ++   QP
Sbjct: 266 KLGVNQP 272


>gi|227501385|ref|ZP_03931434.1| possible site-specific DNA-methyltransferase
           (cytosine-N(4)-specific) [Anaerococcus tetradius ATCC
           35098]
 gi|227216424|gb|EEI81846.1| possible site-specific DNA-methyltransferase
           (cytosine-N(4)-specific) [Anaerococcus tetradius ATCC
           35098]
          Length = 126

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 35/57 (61%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           P  L+   + +      +ILDPF GSGT G VA ++ R +IGI++ +DY  IA +RI
Sbjct: 65  PPKLVELCIKAGCPKKGLILDPFMGSGTVGMVAIRMDREYIGIDINKDYCQIAKERI 121


>gi|323161362|gb|EFZ47269.1| DNA methylase family protein [Escherichia coli E128010]
          Length = 350

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 41/65 (63%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  +G+E++ +  +   K
Sbjct: 283 HPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALGRRALGVELESERFNQTVK 342

Query: 264 RIASV 268
            ++ +
Sbjct: 343 EVSEL 347



 Score = 43.9 bits (102), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 19/113 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           +I  + +  ++ LP  S+DLI  DPPY  ++ NG                WD ++   E 
Sbjct: 12  LINADCLHFIQSLPDDSIDLIVTDPPYFKVKPNG----------------WDNQWKGDED 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K
Sbjct: 56  YLKWLDHCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAK 107


>gi|323977145|gb|EGB72232.1| DNA methylase [Escherichia coli TW10509]
          Length = 349

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 39/65 (60%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  IG+E++    +   +
Sbjct: 283 HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALGRRAIGVELETGRFEQTVR 342

Query: 264 RIASV 268
            +  +
Sbjct: 343 EVQDL 347



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 23/116 (19%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  ++ LP  SVDLI  DPPY                    +SWD  + +E  
Sbjct: 11  ELINADCLEFIQTLPENSVDLIVTDPPY---------------FKVKPESWD--NQWEGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           D + + WL  C     RVLKP G+L++    H +     ++    F +LN I+W K
Sbjct: 54  DDYLK-WLDQCLAQFWRVLKPAGSLYLFCG-HRLASDTEIMMRERFNVLNHIIWAK 107


>gi|323972445|gb|EGB67652.1| DNA methylase [Escherichia coli TA007]
          Length = 350

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 41/65 (63%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  +G+E++ +  +   K
Sbjct: 283 HPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALGRRALGVELESERFNQTVK 342

Query: 264 RIASV 268
            ++ +
Sbjct: 343 EVSEL 347



 Score = 43.5 bits (101), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 19/113 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           +I  + +  ++ LP  S+DLI  DPPY  ++ NG                WD ++   E 
Sbjct: 12  LINSDCLHFIQSLPDDSIDLIVTDPPYFKVKPNG----------------WDNQWKGDED 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K
Sbjct: 56  YLKWLDHCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAK 107


>gi|297379485|gb|ADI34372.1| Modification methylase [Helicobacter pylori v225d]
          Length = 252

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 96/247 (38%), Gaps = 28/247 (11%)

Query: 29  ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
           +SVLE       DL    PPYNL +  Q                D F +++ Y  + + W
Sbjct: 17  VSVLETFEKGFYDLCITSPPYNLSIEYQ--------------GSDDFRAYDDYLNWCKNW 62

Query: 89  LLACRRVLKPNGTLWV----IGSYHNIFRIGT----MLQNLNFWILNDIVWRKSN-PMPN 139
           L  C    K    L +      + H    +G     + +   +   N I+W +SN     
Sbjct: 63  LKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNESNISRCT 122

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
             G   Q +    I    +P      F  +  K   +   +  +  +   +G      + 
Sbjct: 123 AWGSWLQASAPYAI----APVELIVVFYKNEYKRQKQTSTISKEEFLLYTNGLWSFSGES 178

Query: 200 GEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E++++Y 
Sbjct: 179 KKRLKHPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEIEKEYC 238

Query: 259 DIATKRI 265
           +++ KRI
Sbjct: 239 ELSKKRI 245


>gi|227501379|ref|ZP_03931428.1| possible site-specific DNA-methyltransferase
           (cytosine-N(4)-specific) [Anaerococcus tetradius ATCC
           35098]
 gi|227216433|gb|EEI81850.1| possible site-specific DNA-methyltransferase
           (cytosine-N(4)-specific) [Anaerococcus tetradius ATCC
           35098]
          Length = 126

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 35/57 (61%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           P  L+   + +      +ILDPF GSGT G VA ++ R +IGI++ +DY  IA +RI
Sbjct: 65  PPKLVELCIKAGCPKKGLILDPFMGSGTVGMVAIRMDREYIGIDINKDYCQIAKERI 121


>gi|119355923|ref|YP_910567.1| DNA methylase N-4/N-6 domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119353272|gb|ABL64143.1| DNA methylase N-4/N-6 domain protein [Chlorobium phaeobacteroides
           DSM 266]
          Length = 429

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 105/266 (39%), Gaps = 54/266 (20%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF-SSFEAY-DAFTRAWLLAC 92
           LP  SV LI   PPY              L D  T++   F  S+E+Y +     W   C
Sbjct: 4   LPDSSVHLIITSPPY------------WQLKDYGTENQIGFHDSYESYINNLNLVWS-EC 50

Query: 93  RRVLKPNGTLWV-IGS------YHNIFR-------IGTMLQNLNFWILNDIVWRKSNPMP 138
            RVL P   L + IG       Y+  ++       I    + + F  +  ++W+K     
Sbjct: 51  ERVLHPGCRLCINIGDQFARSVYYGRYKVIPIRTEIIRFCETIGFDYMGAVIWQKVTTTN 110

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL-------------KAANEDVQMRSDWL 185
              G        +++ + P P+      +Y+ +             K   E   M ++  
Sbjct: 111 TTGG-------ASIMGSFPYPRNGILKLDYEFILLFKKQGDAPKPSKELKERSAMTTEEW 163

Query: 186 IPICSGSERLR--NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
               SG        +DG   H    PE L  R++      G+ +LDPF GSGT+   AK 
Sbjct: 164 NTCFSGHWNFAGAKQDG---HIAVFPEDLPHRLIRMFAFVGETVLDPFMGSGTTSLAAKN 220

Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQ 269
           L R+ +G E+  ++I IA +++ S Q
Sbjct: 221 LDRNSVGYEINPEFIGIAREKLNSNQ 246


>gi|323187745|gb|EFZ73046.1| DNA methylase family protein [Escherichia coli RN587/1]
          Length = 349

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 35/51 (68%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  IG+E++
Sbjct: 283 HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALGRRAIGVELE 333



 Score = 45.4 bits (106), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 23/116 (19%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  +  LP  SVDLI  DPPY                    + WD  + ++  
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPY---------------FKVKPEGWD--NQWKGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           D + + WL  C     RVLKP G+L++   +     I  M++   F +LN I+W K
Sbjct: 54  DDYLK-WLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAK 107


>gi|303239110|ref|ZP_07325640.1| DNA methylase N-4/N-6 domain protein [Acetivibrio cellulolyticus
           CD2]
 gi|302593448|gb|EFL63166.1| DNA methylase N-4/N-6 domain protein [Acetivibrio cellulolyticus
           CD2]
          Length = 419

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 104/251 (41%), Gaps = 36/251 (14%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K +++ G+S     VL  +  K  +    DPPYN+   G       +  DA+    D+  
Sbjct: 167 KHRLMCGDSTILQDVLTLMDGKKANTCVTDPPYNVDYTG-------ATKDALKIKNDRLE 219

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             + Y+ F  +       VL   G ++V  +           ++  F + N  +W K + 
Sbjct: 220 DGKFYE-FLLSAFKNVFEVLDNGGGIYVFHADTEGLNFRKAFKDAGFHLANVCIWVKQSM 278

Query: 137 MPNFRGRR-FQNAHETLIWA-SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           +    GR  +Q  HE +++   P+   K Y+           D +  + W     S +  
Sbjct: 279 V---LGRSDYQWQHEPVLYGWKPTGSHKWYS-----------DRKQTTIWNFDRPSKNVE 324

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                    HPT KP  L++  + +S+    I+LDPF GSG++   +++L R    +E+ 
Sbjct: 325 ---------HPTMKPVNLVAYPIKNSSLSNCIVLDPFGGSGSTLIASEQLGRICNTMELD 375

Query: 255 QDYIDIATKRI 265
           + Y D+  KR 
Sbjct: 376 EKYCDVIVKRF 386


>gi|257389071|ref|YP_003178844.1| DNA methylase N-4/N-6 domain protein [Halomicrobium mukohataei DSM
           12286]
 gi|257171378|gb|ACV49137.1| DNA methylase N-4/N-6 domain protein [Halomicrobium mukohataei DSM
           12286]
          Length = 352

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 109/257 (42%), Gaps = 27/257 (10%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNL-QLNGQLYRP-DHSLVDAVTDSWDK 74
            E   +++ G++  +   LP  SVDL+   PPY + ++   ++   D ++ DA+ D  D 
Sbjct: 1   METTHRVVTGDAREL--ALPDDSVDLVVTSPPYPMIEMWDDIFAALDPAVEDALADE-DG 57

Query: 75  FSSFE-AYDAFTRAWLLACRRVLKPNGTLWV--------IG----SYHNIFRIGTMLQNL 121
             +F+  +D     W    R VL+P G   +        IG    S+ N   I T L + 
Sbjct: 58  ERAFQLMHDVLDTVWAEVVR-VLRPGGIACINVGDATRSIGDGFRSFSNHAEITTRLTDR 116

Query: 122 NFWILNDIVWRK-SNPMPNFRGRRF--QNAHETL----IWASPSPKAKGYTFNYDALKAA 174
               L DI+WRK SN    F G      NA+ TL    +    + + + +    D    +
Sbjct: 117 GLRALPDILWRKPSNRATKFMGSGMLPPNAYPTLEHEHVLVFRNGQRRTFPPGDDDRYES 176

Query: 175 NEDVQMRSDWLIPICS-GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
               + R+ W   +     ER   +DG +      P  L  R++   +  GD +LDPF G
Sbjct: 177 AYFWEERNVWFSDLWELTGERQAVEDGLRERSGAFPLELPYRLVSMFSTYGDTVLDPFLG 236

Query: 234 SGTSGAVAKKLRRSFIG 250
           +GT+   A    R  +G
Sbjct: 237 TGTTTMAALVAGRDSVG 253


>gi|291546457|emb|CBL19565.1| DNA modification methylase [Ruminococcus sp. SR1/5]
          Length = 548

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 39/70 (55%)

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           +D    HPTQKP  L +R +++S+ PGDIILD F GSG +   A+   R    +E+   Y
Sbjct: 430 RDTATFHPTQKPVELATRAILNSSDPGDIILDLFGGSGFTLIGAEMTERQARLVELSPTY 489

Query: 258 IDIATKRIAS 267
            D   +R  S
Sbjct: 490 CDGIIRRYVS 499


>gi|260588283|ref|ZP_05854196.1| DNA (cytosine-5-)-methyltransferase [Blautia hansenii DSM 20583]
 gi|260541421|gb|EEX21990.1| DNA (cytosine-5-)-methyltransferase [Blautia hansenii DSM 20583]
          Length = 259

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 109/281 (38%), Gaps = 75/281 (26%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSF 78
           K+ +   + I  L  LP  SVD++  DPPY    N                 WD      
Sbjct: 13  KEGLFLMDGIEGLRSLPKHSVDMLLTDPPYGTTRN----------------YWDVPLPLP 56

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLW---------VIGS-------YHNIF--RIGTMLQN 120
           E ++A   A        +KPNG +          V+G+       Y  I+    GT   N
Sbjct: 57  ELWEAVKWA--------VKPNGAVLFFAQCPFDKVLGASNLAMLRYEWIWYKERGTGFLN 108

Query: 121 LNFWIL----NDIVWRKSNPM--PNFR-GRRFQNAHETLIWASPSPKAKGYTFNYDALK- 172
            N   L    N +V+ + +P+  P F  G+ +   H             G + NY   + 
Sbjct: 109 ANRAPLKKSENILVFYQKSPVYNPQFTYGKPYTRVHSR----------SGTSSNYGKFER 158

Query: 173 ---AANEDVQMRSDWL-IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
               +N+  +   + L +P  SG           +HPTQKP  L   ++ + T+PG+++ 
Sbjct: 159 QGSESNDGRRYPGNVLFVPTVSGG----------IHPTQKPVELCEYLIRTYTRPGELVA 208

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           D   GSGT+   A    R F+  E    +   A++RI + Q
Sbjct: 209 DICAGSGTTAIAAINTERRFVCFETAPSFYAAASERIRAAQ 249


>gi|194430409|ref|ZP_03062894.1| DNA methylase [Escherichia coli B171]
 gi|194411547|gb|EDX27884.1| DNA methylase [Escherichia coli B171]
          Length = 349

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 39/65 (60%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  IG+E++    +   +
Sbjct: 283 HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALGRRAIGVELETGRFEQTVR 342

Query: 264 RIASV 268
            +  +
Sbjct: 343 EVQDL 347



 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 23/116 (19%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  ++ LP  SVDLI  DPPY                    + WD  + +E  
Sbjct: 11  ELINADCLEFIQTLPENSVDLIVTDPPY---------------FKVKPEGWD--NQWEGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           D + + WL  C     RVLKP G+L++    H +     ++    F +LN I+W K
Sbjct: 54  DDYLK-WLDQCLAQFWRVLKPAGSLYLFCG-HRLASDTEIMMRERFNVLNHIIWAK 107


>gi|124008729|ref|ZP_01693419.1| chromosome partitioning protein, putative [Microscilla marina ATCC
           23134]
 gi|123985805|gb|EAY25678.1| chromosome partitioning protein, putative [Microscilla marina ATCC
           23134]
          Length = 495

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IAT 262
           HPT KP  +++  L+ +T  GDI LD F GSGT+   A++ RR   GIE +  Y+  I T
Sbjct: 403 HPTPKPVRMIADALLDTTNEGDIALDCFLGSGTTLMAAERTRRICYGIEYEPGYMQGILT 462

Query: 263 KRIASVQ 269
           + I   Q
Sbjct: 463 RFIHHCQ 469


>gi|324117943|gb|EGC11842.1| DNA methylase [Escherichia coli E1167]
          Length = 350

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 39/62 (62%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  +G+E++ +  +   K
Sbjct: 283 HPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALGRRALGVELESERFNQTVK 342

Query: 264 RI 265
            I
Sbjct: 343 EI 344



 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 19/113 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           +I  + +  ++ LP  S+DLI  DPPY  ++ NG                WD ++   E 
Sbjct: 12  LINADCLHFIQSLPDDSIDLIVTDPPYFKVKPNG----------------WDNQWKGDED 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K
Sbjct: 56  YLKWLDHCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAK 107


>gi|9634640|ref|NP_038314.1| ORF13 [Streptococcus phage 7201]
 gi|7248470|gb|AAF43506.1|AF145054_14 ORF13 [Streptococcus phage 7201]
          Length = 250

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 40/66 (60%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +HPTQKP  +L R++   T P D+++DP  GSG++   A ++ R+  G E+K+++   A 
Sbjct: 179 IHPTQKPIPVLKRLIELFTDPEDVVIDPVAGSGSTIRAAVEMNRNAYGFEIKKEFYKKAQ 238

Query: 263 KRIASV 268
             + S 
Sbjct: 239 SEMLST 244


>gi|194426854|ref|ZP_03059407.1| DNA methylase [Escherichia coli B171]
 gi|194415190|gb|EDX31459.1| DNA methylase [Escherichia coli B171]
          Length = 350

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 41/65 (63%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  +G+E++ +  +   K
Sbjct: 283 HPCEKPADMLRQIINASSRPGDMVADFFMGSGSTIKAAMALGRRALGVELESERFNQTVK 342

Query: 264 RIASV 268
            ++ +
Sbjct: 343 EVSEL 347



 Score = 43.9 bits (102), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 19/113 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           +I  + +  ++ LP  S+DLI  DPPY  ++ NG                WD ++   E 
Sbjct: 12  LINADCLHFIQSLPDDSIDLIVTDPPYFKVKPNG----------------WDNQWKGDED 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K
Sbjct: 56  YLKWLDHCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAK 107


>gi|260576703|ref|ZP_05844689.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sp. SW2]
 gi|259021070|gb|EEW24380.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sp. SW2]
          Length = 454

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 195 LRNKDG---EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           +R+K G      HP   P AL+  +L + + PGD+I +PF GSGT    A++  R    +
Sbjct: 356 MRHKGGLGAAGSHPAVFPVALVEAVLTAFSDPGDLIFEPFCGSGTQIVAAERAGRRCFAM 415

Query: 252 EMKQDYIDIATKR 264
           E+   Y D+A +R
Sbjct: 416 ELDPVYCDVAVRR 428


>gi|320527418|ref|ZP_08028599.1| DNA (cytosine-5-)-methyltransferase [Solobacterium moorei F0204]
 gi|320132131|gb|EFW24680.1| DNA (cytosine-5-)-methyltransferase [Solobacterium moorei F0204]
          Length = 541

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 37/60 (61%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           PEALL  IL   +  GD +LD F GSG++ AVA K+ R +IG+E+ +    +   RI +V
Sbjct: 342 PEALLKMILEYFSNEGDWVLDSFLGSGSTMAVAHKMNRKWIGVELGEHTYSLCKTRIDNV 401


>gi|152981981|ref|YP_001354390.1| DNA modification methylase [Janthinobacterium sp. Marseille]
 gi|151282058|gb|ABR90468.1| DNA modification methylase [Janthinobacterium sp. Marseille]
          Length = 473

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 3/87 (3%)

Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           R + K G+ + HP   P AL   IL + +  GDI+ +PF GSGT+   A++  R    +E
Sbjct: 364 RHKGKIGQDIDHPAVFPVALPEFILDAYSDSGDIVFEPFGGSGTTMLAAERTGRRCRAVE 423

Query: 253 MKQDYIDIATKRIASVQPLGNIELTVL 279
           +  +Y+D+A KR    Q   ++ +T+L
Sbjct: 424 IAPEYVDVAVKRFQ--QNFPDVPVTLL 448


>gi|315612387|ref|ZP_07887300.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sanguinis ATCC
           49296]
 gi|315315368|gb|EFU63407.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sanguinis ATCC
           49296]
          Length = 224

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 104/256 (40%), Gaps = 48/256 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY-----NLQLNGQLYRP-DHSLVDAVTDSWDKF 75
           K + G+ + ++++ P    DL   DPPY       +  G+   P   S +   T  W + 
Sbjct: 3   KFLNGDCMDIMKQYPDDYFDLAIVDPPYFSGPEKRKFYGRKISPIGVSRLYGETSEW-QI 61

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            + + +D   R         +  N  +W +  +   F  G             IVW K N
Sbjct: 62  PNKDYFDELFR---------VSKNQIIWGVNYFDYSFGPGR------------IVWDKVN 100

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
              +F       +   + + S     + + + ++ +      +Q +S     I  G  + 
Sbjct: 101 GQSSF-------SDCEIAYCSLHDSTRLFRYMWNGM------MQGKS-----ISEGHIQQ 142

Query: 196 RNK--DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
            NK  +  ++HPTQKP  L   +L +  K GD ILD   GS +S    ++L   ++G E+
Sbjct: 143 GNKALNEVRIHPTQKPANLYLWLLRNYAKEGDKILDTHVGSASSLIACQELGFEYVGCEL 202

Query: 254 KQDYIDIATKRIASVQ 269
             D  +IA +R+ + +
Sbjct: 203 DGDIFNIAKQRLDAYE 218


>gi|300902573|ref|ZP_07120550.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 84-1]
 gi|301301981|ref|ZP_07208114.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 124-1]
 gi|300405386|gb|EFJ88924.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 84-1]
 gi|300842533|gb|EFK70293.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 124-1]
 gi|315253749|gb|EFU33717.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 85-1]
          Length = 349

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 35/51 (68%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  IG+E++
Sbjct: 283 HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALGRRAIGVELE 333



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 70/166 (42%), Gaps = 36/166 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  +  LP  SVDLI  DPPY                    + WD  + ++  
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPY---------------FKVKPEGWD--NQWKGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           D + + WL  C     RVLKP G+L++   +     I  M++   F +LN I+W K  P 
Sbjct: 54  DDYLK-WLDQCLAQFWRVLKPAGSLYLFCGHRRASDIEIMMRE-RFSVLNHIIWAK--PS 109

Query: 138 PNFRG------RRFQNAHETLIWASP-----SPKAKGYTFNYDALK 172
             + G      R +  A E +++A        PK  GY     ALK
Sbjct: 110 GRWNGCNKESLRAYFPATERILFAEHYQGPYRPKDAGYAAKGSALK 155


>gi|255103333|ref|ZP_05332310.1| putative site-specific DNA-methyltransferase [Clostridium difficile
           QCD-63q42]
 gi|255652441|ref|ZP_05399343.1| putative site-specific DNA-methyltransferase [Clostridium difficile
           QCD-37x79]
          Length = 269

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 42/69 (60%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +HPT+KP  LL  ++++ +  GD+ILD   G  ++G  A +  R FIGIE+ ++  +   
Sbjct: 182 IHPTEKPVPLLKDLIMTYSNEGDVILDFTAGVISTGVAALETNRRFIGIELNEESFNKGV 241

Query: 263 KRIASVQPL 271
           KR+ + + L
Sbjct: 242 KRMRNTESL 250


>gi|254778966|ref|YP_003057071.1| Non-functional cytosine methyltransferase (N4 methylation of
           cytosyl residues) [Helicobacter pylori B38]
 gi|254000877|emb|CAX28813.1| Non-functional cytosine methyltransferase (N4 methylation of
           cytosyl residues) [Helicobacter pylori B38]
          Length = 252

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 96/246 (39%), Gaps = 28/246 (11%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
           SVLE       DL    PPYNL +  Q                D F +++ Y  + + WL
Sbjct: 18  SVLETFEKGFYDLCITSPPYNLSIEYQ--------------GSDDFRAYDDYLNWCKNWL 63

Query: 90  LACRRVLKPNGTLWV----IGSYHNIFRIG---TMLQNLNFW-ILNDIVWRKSN-PMPNF 140
             C    K    L +      + H    +G   T++     W   N I+W +SN      
Sbjct: 64  KNCYFWGKEQARLCLNVPLDTNKHGKQSLGADITIVAKECGWKYQNTIIWNESNISRRTA 123

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G   Q +    I    +P      F  +  K   +   M  +  +   +G      +  
Sbjct: 124 WGSWLQASAPYAI----APVELIVIFYKNEYKRKKQTSTMSKEEFLLYTNGLWSFSGESK 179

Query: 201 EKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E++++Y +
Sbjct: 180 KRLKHPAPFPRELPRRCIQLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEIEKEYCE 239

Query: 260 IATKRI 265
           ++ KRI
Sbjct: 240 LSKKRI 245


>gi|188493586|ref|ZP_03000856.1| DNA methylase [Escherichia coli 53638]
 gi|188488785|gb|EDU63888.1| DNA methylase [Escherichia coli 53638]
          Length = 350

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 39/62 (62%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  +G+E++ +  +   K
Sbjct: 283 HPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALGRRALGVELESERFNQTVK 342

Query: 264 RI 265
            I
Sbjct: 343 EI 344



 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 23/116 (19%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  ++ LP  SVDLI  DPPY                    + WD  + ++  
Sbjct: 11  ELINADCLEFIQTLPENSVDLIVTDPPY---------------FKVKPEGWD--NQWKGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           D + + WL  C     RVLKP G+L++   +     I  M++   F +LN I+W K
Sbjct: 54  DDYLK-WLDQCLTQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAK 107


>gi|320172932|gb|EFW48161.1| putative DNA methylase [Shigella dysenteriae CDC 74-1112]
 gi|332083675|gb|EGI88893.1| DNA methylase family protein [Shigella dysenteriae 155-74]
          Length = 350

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 39/62 (62%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  +G+E++ +  +   K
Sbjct: 283 HPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALGRRALGVELESERFNQTVK 342

Query: 264 RI 265
            I
Sbjct: 343 EI 344



 Score = 43.9 bits (102), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 19/113 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           +I  + +  ++ LP  S+DLI  DPPY  ++ NG                WD ++   E 
Sbjct: 12  LINADCLHFIQSLPDDSIDLIVTDPPYFKVKPNG----------------WDNQWKGDED 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K
Sbjct: 56  YLKWLDHCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAK 107


>gi|255008159|ref|ZP_05280285.1| putative site-specific DNA-methyltransferase [Bacteroides fragilis
           3_1_12]
 gi|313145876|ref|ZP_07808069.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313134643|gb|EFR52003.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 254

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 103/268 (38%), Gaps = 59/268 (22%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           + K + + V+  LP  S+DL+  DPP+ +                    WDK        
Sbjct: 12  LYKADCLEVMPFLPESSIDLVLCDPPFGI----------------TASQWDKII------ 49

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGS--YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
            F   W    RRV K N    + GS  + ++ R G  L+   +    D VW KS    NF
Sbjct: 50  PFPEMWK-EIRRVRKENAPTVLFGSEPFSSLLRCGN-LEEFKY----DWVWEKSK-ASNF 102

Query: 141 RGRRFQ--NAHETLIWASPSPKAKGYTFNYDALKAAN---EDVQMRSDW--LIPICSGSE 193
              + Q   AHE +     S   KG    Y  ++         +  S+W  +  + + + 
Sbjct: 103 LLAKKQPLKAHELI-----SVFGKGRIPYYPIMEEGEPYGNRTKRGSNWTGINNVPNPTF 157

Query: 194 RLRNK----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           R  NK                +G+ +H  QKP ALL  ++ + TK GD +LD   GS ++
Sbjct: 158 RNENKGTRYPRSVIYFKTAESEGKTIHVNQKPIALLQYLIRTYTKEGDTVLDFASGSMST 217

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRI 265
                   R  I IE  + +     KR+
Sbjct: 218 AIACIYTHRKCICIEKDETHFSQGEKRV 245


>gi|91210506|ref|YP_540492.1| putative prophage CP-933O DNA adenine methyltransferase
           [Escherichia coli UTI89]
 gi|117623488|ref|YP_852401.1| putative DNA adenine methyltransferase encoded by prophage CP-933O
           [Escherichia coli APEC O1]
 gi|187733653|ref|YP_001880053.1| DNA methylase [Shigella boydii CDC 3083-94]
 gi|218558208|ref|YP_002391121.1| DNA adenine methyltransferase ( DNA methylase) from phage origin
           [Escherichia coli S88]
 gi|237705245|ref|ZP_04535726.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|91072080|gb|ABE06961.1| putative DNA adenine methyltransferase encoded by prophage CP-933O
           [Escherichia coli UTI89]
 gi|115512612|gb|ABJ00687.1| putative DNA adenine methyltransferase encoded by prophage CP-933O
           [Escherichia coli APEC O1]
 gi|187430645|gb|ACD09919.1| DNA methylase [Shigella boydii CDC 3083-94]
 gi|218364977|emb|CAR02674.1| putative DNA adenine methyltransferase ( DNA methylase) from phage
           origin [Escherichia coli S88]
 gi|226900002|gb|EEH86261.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|294491791|gb|ADE90547.1| DNA methylase [Escherichia coli IHE3034]
 gi|307627204|gb|ADN71508.1| putative DNA adenine methyltransferase ( DNA methylase) from phage
           origin [Escherichia coli UM146]
 gi|315288675|gb|EFU48073.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 110-3]
 gi|323949606|gb|EGB45492.1| DNA methylase [Escherichia coli H252]
          Length = 349

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 35/51 (68%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  IG+E++
Sbjct: 283 HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALGRRAIGVELE 333



 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 70/166 (42%), Gaps = 36/166 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  +  LP  SVDLI  DPPY                    + WD  + ++  
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPY---------------FKVKPEGWD--NQWKGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           D + + WL  C     RVLKP G+L++   +     I  M++   F +LN I+W K  P 
Sbjct: 54  DDYLK-WLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAK--PS 109

Query: 138 PNFRG------RRFQNAHETLIWASP-----SPKAKGYTFNYDALK 172
             + G      R +  A E +++A        PK  GY     ALK
Sbjct: 110 GRWNGCNKESLRAYFPATERILFAEHYQGPYRPKDAGYAAKGSALK 155


>gi|91214055|ref|YP_544041.1| hypothetical protein UTI89_C5110 [Escherichia coli UTI89]
 gi|91075629|gb|ABE10510.1| hypothetical protein UTI89_C5110 [Escherichia coli UTI89]
          Length = 350

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 39/62 (62%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  +G+E++ +  +   K
Sbjct: 283 HPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALGRRALGVELESERFNQTVK 342

Query: 264 RI 265
            I
Sbjct: 343 EI 344



 Score = 44.3 bits (103), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 19/113 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           +I  + +  ++ LP  S+DLI  DPPY  ++ NG                WD ++   E 
Sbjct: 12  LINADCLHFIQSLPDDSIDLIVTDPPYFKVKPNG----------------WDNQWKGDED 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K
Sbjct: 56  YLKWLDHCLAQFWRVLKPAGSLYLFCGHRLASDIEVMMRE-RFNVLNHIIWAK 107


>gi|302873930|ref|YP_003842563.1| DNA methylase N-4/N-6 domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307689819|ref|ZP_07632265.1| DNA methylase N-4/N-6 domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302576787|gb|ADL50799.1| DNA methylase N-4/N-6 domain protein [Clostridium cellulovorans
           743B]
          Length = 247

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 102/265 (38%), Gaps = 58/265 (21%)

Query: 20  KDKI-IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           KDK  +K +S   L  +   S+DL+   PPYN+              D    S DK  S 
Sbjct: 9   KDKFELKVSSSENLNFILNNSLDLVITSPPYNIG------------TDYTGSSDDK--SL 54

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWV-----------IGSYHNIFRIGTMLQNLNFWILN 127
             Y+ F +     C   LK +    V           +  Y  I+   ++L+N+ F +++
Sbjct: 55  YGYETFIKNVFKECYEKLKMDAYCIVNIPENIKTKNEVWYYPKIY--SSILKNIGFSLIS 112

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
              W K +      G  F +      W              +     +  V   ++W + 
Sbjct: 113 VHPWFKLS----LDGELFTSKK----WE-------------EGKVCKDSHVHSVTEWFMI 151

Query: 188 ICSGSERLRNKDGE---------KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
               +++   K GE          LHP   P AL+  ++ +  +    +LDPF G  T+G
Sbjct: 152 FKKSNQKEEFKIGEGFTFTPYKTPLHPAAWPVALIEELIKNYCQVEGKVLDPFAGICTTG 211

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATK 263
               +  R FIG+++ +DYI I +K
Sbjct: 212 LACVRNNRCFIGVDISKDYISIGSK 236


>gi|260854632|ref|YP_003228523.1| putative DNA methylase [Escherichia coli O26:H11 str. 11368]
 gi|257753281|dbj|BAI24783.1| putative DNA methylase [Escherichia coli O26:H11 str. 11368]
 gi|323157258|gb|EFZ43378.1| DNA methylase family protein [Escherichia coli EPECa14]
          Length = 349

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 39/65 (60%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  IG+E++    +   +
Sbjct: 283 HPCEKPAEMLQQIINASSRPGDLVADFFMGSGSTVKAAMALGRCAIGVELETGRFEQTVR 342

Query: 264 RIASV 268
            +  +
Sbjct: 343 EVQDL 347



 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 23/116 (19%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  ++ LP  SVDLI  DPPY                    + WD  + +E  
Sbjct: 11  ELINADCLEFIQTLPENSVDLIVTDPPY---------------FKVKPEGWD--NQWEGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           D + + WL  C     RVLKP G+L++    H +     ++    F +LN I+W K
Sbjct: 54  DDYLK-WLDQCLAQFWRVLKPAGSLYLFCG-HRLASDTEIMMRERFNVLNHIIWAK 107


>gi|329295798|ref|ZP_08253134.1| DNA methylase, N6_N4_Mtase domain protein [Plautia stali symbiont]
          Length = 348

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 41/72 (56%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP ALL  I+ +S++ G  + D F GSG++   A +L R  IG+E++ D      K
Sbjct: 273 HPCEKPAALLEHIINASSRSGHTVADFFMGSGSAVKAAIQLGRQAIGVELETDRFIQTQK 332

Query: 264 RIASVQPLGNIE 275
            I ++ P  N E
Sbjct: 333 EIENLIPQINNE 344



 Score = 43.9 bits (102), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 17/106 (16%)

Query: 29  ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK-FSSFEAYDAFTRA 87
           +  ++ L   S+DLI  DPPY        YR         + +WD+ + +   Y A+   
Sbjct: 1   MPYIKTLSDNSIDLIVTDPPY--------YR-------VKSCAWDRQWKTTGQYLAWLND 45

Query: 88  WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           +L+  +R+LKPNG+L++  S         ML+N +  +LN I+W K
Sbjct: 46  YLVEFQRILKPNGSLYLFCSAALAADTEIMLRN-HMRVLNHIIWAK 90


>gi|194440206|ref|ZP_03072244.1| DNA methylase [Escherichia coli 101-1]
 gi|194420860|gb|EDX36909.1| DNA methylase [Escherichia coli 101-1]
          Length = 349

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 39/65 (60%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  IG+E++    +   +
Sbjct: 283 HPCEKPAEMLQQIINASSRPGDLVADFFMGSGSTVKAAMALGRCAIGVELETGRFEQTVR 342

Query: 264 RIASV 268
            +  +
Sbjct: 343 EVQDL 347



 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 23/116 (19%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  ++ LP  SVDLI  DPPY                    + WD  + +E  
Sbjct: 11  ELINADCLEFIQTLPENSVDLIVTDPPY---------------FKVKPEGWD--NQWEGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           D + + WL  C     RVLKP G+L++    H +     ++    F +LN I+W K
Sbjct: 54  DDYLK-WLDQCLAQFWRVLKPAGSLYLFCG-HRLASDTEIMMRERFNVLNHIIWAK 107


>gi|148609438|ref|YP_001272569.1| putative DNA methylase [Phage cdtI]
 gi|148524767|dbj|BAF63389.1| putative DNA methylase [Phage cdtI]
 gi|309704853|emb|CBJ04205.1| predicted methyltransferase [Escherichia coli ETEC H10407]
 gi|324020455|gb|EGB89674.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 117-3]
          Length = 350

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 39/62 (62%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  +G+E++ +  +   K
Sbjct: 283 HPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALGRRALGVELESERFNQTVK 342

Query: 264 RI 265
            I
Sbjct: 343 EI 344



 Score = 43.9 bits (102), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 19/113 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           +I  + +  ++ LP  S+DLI  DPPY  ++ NG                WD ++   E 
Sbjct: 12  LINADCLHFIQSLPDDSIDLIVTDPPYFKVKPNG----------------WDNQWKGDED 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K
Sbjct: 56  YLKWLDHCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAK 107


>gi|194430626|ref|ZP_03063079.1| DNA methylase [Escherichia coli B171]
 gi|215486360|ref|YP_002328791.1| predicted DNA methylase [Escherichia coli O127:H6 str. E2348/69]
 gi|312968768|ref|ZP_07782975.1| DNA methylase family protein [Escherichia coli 2362-75]
 gi|194411330|gb|EDX27699.1| DNA methylase [Escherichia coli B171]
 gi|215264432|emb|CAS08792.1| predicted DNA methylase [Escherichia coli O127:H6 str. E2348/69]
 gi|312286170|gb|EFR14083.1| DNA methylase family protein [Escherichia coli 2362-75]
          Length = 349

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 39/65 (60%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  IG+E++    +   +
Sbjct: 283 HPCEKPAEMLQQIINASSRPGDLVADFFMGSGSTVKAAMALGRCAIGVELETGRFEQTVR 342

Query: 264 RIASV 268
            +  +
Sbjct: 343 EVQDL 347



 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 23/116 (19%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  ++ LP  SVDLI  DPPY                    + WD  + +E  
Sbjct: 11  ELINADCLEFIQTLPENSVDLIVTDPPY---------------FKVKPEGWD--NQWEGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           D + + WL  C     RVLKP G+L++    H +     ++    F +LN I+W K
Sbjct: 54  DDYLK-WLDQCLAQFWRVLKPAGSLYLFCG-HRLASDTEIMMRERFNVLNHIIWAK 107


>gi|152982005|ref|YP_001354446.1| phage related DNA methyltransferase [Janthinobacterium sp.
           Marseille]
 gi|151282082|gb|ABR90492.1| phage related DNA methyltransferase [Janthinobacterium sp.
           Marseille]
          Length = 474

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 3/97 (3%)

Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           R + K G+ + HP   P AL    + + T+ GDI+ +PF GSGT+   A++  R    +E
Sbjct: 367 RHKGKIGQDIDHPAVFPVALPEFAIEAYTEAGDIVFEPFGGSGTTMLAAQRTGRLCRSME 426

Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
           +  +Y+D+A KR     P   + +T+L   ++  +VA
Sbjct: 427 IAPEYVDVAIKRFQQNHP--GVPVTLLATGQSFEQVA 461


>gi|153817361|ref|ZP_01970028.1| haemagglutinin associated protein [Vibrio cholerae NCTC 8457]
 gi|126512110|gb|EAZ74704.1| haemagglutinin associated protein [Vibrio cholerae NCTC 8457]
          Length = 241

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 94/234 (40%), Gaps = 33/234 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF--E 79
           KI + +++  L+ L   SVDL   DPPY      +       L ++ + S   FS F   
Sbjct: 27  KIYQMDAVDWLKTLENCSVDLFITDPPYESLEKYRQIGTTTRLKESKSSSNQWFSVFPNT 86

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            ++   R       RVLK     ++      +F    + +++ F     IVW K      
Sbjct: 87  RFEELFRE----VYRVLKKGSHFYLFCDQETMFLAKPIAESVGFKFWKPIVWDKCAIG-- 140

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
             G  ++  +E +++     +                     +D  +P     + L  K 
Sbjct: 141 -MGYHYRARYEFILFFEKGKRK-------------------LNDLSVP-----DVLEYKR 175

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
             K +PT+KP  LL  ++  S+   +I+ D FFGSG++   A  L R +IG ++
Sbjct: 176 VWKGYPTEKPVELLEVLIRQSSSENEIVADSFFGSGSTLIAANNLSRKYIGCDI 229


>gi|191169084|ref|ZP_03030846.1| DNA methylase [Escherichia coli B7A]
 gi|190900878|gb|EDV60665.1| DNA methylase [Escherichia coli B7A]
          Length = 349

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 39/65 (60%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  IG+E++    +   +
Sbjct: 283 HPCEKPAEMLQQIINASSRPGDLVADFFMGSGSTVKAAMALGRCAIGVELETGRFEQTVR 342

Query: 264 RIASV 268
            +  +
Sbjct: 343 EVQDL 347



 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 23/116 (19%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  ++ LP  SVDLI  DPPY                    + WD  + +E  
Sbjct: 11  ELINADCLEFIQTLPENSVDLIVTDPPY---------------FKVKPEGWD--NQWEGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           D + + WL  C     RVLKP G+L++    H +     ++    F +LN I+W K
Sbjct: 54  DDYLK-WLDQCLAQFWRVLKPTGSLYLFCG-HRLASDTEIMMRERFNVLNHIIWAK 107


>gi|193062677|ref|ZP_03043771.1| DNA methylase [Escherichia coli E22]
 gi|192931799|gb|EDV84399.1| DNA methylase [Escherichia coli E22]
          Length = 348

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 39/65 (60%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  IG+E+ +   +    
Sbjct: 283 HPCEKPADMLRQIIEASSRPGDLVADFFMGSGSTIKAALSLERRAIGVELDEGRFNQTVT 342

Query: 264 RIASV 268
            I ++
Sbjct: 343 EIKNI 347



 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 23/116 (19%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  ++ LP  SVDLI  DPPY                    + WD  + ++  
Sbjct: 11  ELINADCLEFIQTLPENSVDLIVTDPPY---------------FKVKPEGWD--NQWKGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           D + + WL  C     RVLKP G+L++    H +     ++    F +LN I+W K
Sbjct: 54  DDYLK-WLDQCLAQFWRVLKPAGSLYLFCG-HRLASDTEIMMRERFNVLNHIIWAK 107


>gi|147919509|ref|YP_686751.1| N-4 cytosine-specific methyltransferase [uncultured methanogenic
           archaeon RC-I]
 gi|110622147|emb|CAJ37425.1| N-4 cytosine-specific methyltransferase [uncultured methanogenic
           archaeon RC-I]
          Length = 347

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 113/275 (41%), Gaps = 29/275 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNL-QLNGQLYRPDHSLVDAVTDSWDKFSSFE- 79
           KI  GN+   ++ L A SV+L+   PPY + ++  + +      V    ++ D   ++E 
Sbjct: 6   KIYFGNARD-MKDLSAGSVNLVVTSPPYPMIEMWDRQFSASSPGVRKALEAGDGKRAYEL 64

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWV-IGS-----------YHNIFRIGTMLQNLNFWILN 127
            + A  R W     RVL P+G + + IG            Y N  RI        + +L 
Sbjct: 65  MHRALDRVWH-ETDRVLAPSGIVCINIGDATRKVSDAFRLYPNHVRITDFFVKAGYDVLP 123

Query: 128 DIVWRKSNPMPN-FRGRRF--QNAHETLI--WASPSPKAKGYTFNYDALKAANEDVQMRS 182
            I+WRK++  PN F G      NA+ TL   +     K     F  DA K   +    R 
Sbjct: 124 MIIWRKTSNKPNKFMGSGMLPPNAYVTLEHEYILIFRKGGNRQFGEDA-KVRRQSAYFRE 182

Query: 183 D---WLIPICS---GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
           +   W   + S   G  +  N  G        P  L  R++   +  GD +LDPF G+GT
Sbjct: 183 ERNAWFSDVWSDLKGVPQQLNGKGRN-RSAAYPFELPYRLIQMYSVYGDTVLDPFAGTGT 241

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           +   A    R+  G E+      I  +R+A V  L
Sbjct: 242 TMLAAMASARNSAGYEIDGTLEQIIDERVAGVMRL 276


>gi|309701411|emb|CBJ00715.1| phage DNA adenine-methylase [Escherichia coli ETEC H10407]
          Length = 349

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 39/65 (60%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  IG+E++    +   +
Sbjct: 283 HPCEKPAEMLQQIINASSRPGDLVADFFMGSGSTVKAAMALGRCAIGVELETGRFEQTVR 342

Query: 264 RIASV 268
            +  +
Sbjct: 343 EVQDL 347



 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 23/116 (19%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  ++ LP  SVDLI  DPPY                    + WD  + +E  
Sbjct: 11  ELINADCLEFIQTLPENSVDLIVTDPPY---------------FKVKPEGWD--NQWEGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           D + + WL  C     RVLKP G+L++    H +     ++    F +LN I+W K
Sbjct: 54  DDYLK-WLDQCLAQFWRVLKPAGSLYLFCG-HRLASDTEIMMRERFNVLNHIIWAK 107


>gi|284097712|ref|ZP_06385726.1| DNA methylase N-4/N-6 domain protein [Candidatus Poribacteria sp.
           WGA-A3]
 gi|283830777|gb|EFC34873.1| DNA methylase N-4/N-6 domain protein [Candidatus Poribacteria sp.
           WGA-A3]
          Length = 124

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 42/80 (52%)

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
            L  + G + H    P+AL    +   TK  D +LDPF GSGT+  VA+ L R+ +GIE+
Sbjct: 39  HLATETGNRKHSAVFPKALPEWFIKLFTKENDWVLDPFAGSGTTCQVAQTLMRNSVGIEI 98

Query: 254 KQDYIDIATKRIASVQPLGN 273
             DY  +A + I     L N
Sbjct: 99  LPDYYKLAQENIKPTPHLEN 118


>gi|157156016|ref|YP_001462382.1| DNA methylase [Escherichia coli E24377A]
 gi|157078046|gb|ABV17754.1| DNA methylase [Escherichia coli E24377A]
          Length = 349

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 39/65 (60%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  IG+E++    +   +
Sbjct: 283 HPCEKPAEMLQQIINASSRPGDLVADFFMGSGSTVKAAMALGRCAIGVELETGRFEQTVR 342

Query: 264 RIASV 268
            +  +
Sbjct: 343 EVQDL 347



 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 23/116 (19%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  ++ LP  SVDLI  DPPY                    + WD  + +E  
Sbjct: 11  ELINADCLKFIQTLPENSVDLIVTDPPY---------------FKVKPEGWD--NQWEGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           D + + WL  C     RVLKP G+L++    H +     ++    F +LN I+W K
Sbjct: 54  DDYLK-WLDQCLAQFWRVLKPAGSLYLFCG-HRLASDTEIMMRERFNVLNHIIWAK 107


>gi|323953705|gb|EGB49531.1| DNA methylase [Escherichia coli H263]
          Length = 201

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 35/51 (68%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  IG+E++
Sbjct: 135 HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALGRRAIGVELE 185


>gi|116494139|ref|YP_805873.1| adenine specific DNA methylase Mod [Lactobacillus casei ATCC 334]
 gi|116104289|gb|ABJ69431.1| Adenine specific DNA methylase Mod [Lactobacillus casei ATCC 334]
          Length = 462

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 2/79 (2%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           G+E L+     K+    KPE LL  I+   +  GD +LD   GS T+ AVA K+ R FIG
Sbjct: 259 GTEELQKLFDGKVFSFPKPENLLKTIIEIGSNAGDTVLDFHMGSATTQAVAMKMHRHFIG 318

Query: 251 IEMKQDYID-IATKRIASV 268
           IE + DYI+ ++  R+  V
Sbjct: 319 IE-QMDYINTVSVPRLQKV 336


>gi|85716950|ref|ZP_01047914.1| DNA methylase N-4/N-6 [Nitrobacter sp. Nb-311A]
 gi|85696229|gb|EAQ34123.1| DNA methylase N-4/N-6 [Nitrobacter sp. Nb-311A]
          Length = 423

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 38/67 (56%)

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           +DG   H TQKP   + R + +++ PG  I +PF GSGT+   A+   RS   IE+   Y
Sbjct: 326 EDGGHGHGTQKPVECMRRPIENNSSPGQAIYEPFSGSGTTIIAAEMTGRSCSAIELDPAY 385

Query: 258 IDIATKR 264
           +D+A  R
Sbjct: 386 VDVAVLR 392


>gi|157311255|ref|YP_001469299.1| gp66 [Mycobacterium phage Tweety]
 gi|148540884|gb|ABQ86135.1| gp66 [Mycobacterium phage Tweety]
          Length = 218

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 18/148 (12%)

Query: 130 VWRKSNPMPNF---RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW-- 184
           VW    P   F   R  +  N  + LIW        G      A   ++E++ +   W  
Sbjct: 66  VWGTERPAAVFGTWRVAKPANVQQCLIWDKRG-AGPGMGDLTTAFGTSHEEIYLIGHWAK 124

Query: 185 -------LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                  +I   S    L ++ G   HPT KP  L+  I+ ++  P  ++ DPF GSG++
Sbjct: 125 RSTRRGSVITTESSPSALTSRIG---HPTPKPIGLMETIIAAA--PEGVVADPFAGSGST 179

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRI 265
              A+ L R  I +E+++ Y +I  KR+
Sbjct: 180 LVAARNLGRKAIDVELEEKYCEIIAKRL 207


>gi|320103977|ref|YP_004179568.1| ParB domain-containing protein nuclease [Isosphaera pallida ATCC
           43644]
 gi|319751259|gb|ADV63019.1| ParB domain protein nuclease [Isosphaera pallida ATCC 43644]
          Length = 446

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 76/190 (40%), Gaps = 20/190 (10%)

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
           F S E ++    AW     RVL+     ++ G Y N      +L+    +    I+W K 
Sbjct: 248 FVSDEVFEKMLHAWFGNLARVLESGRAFYIWGGYANCANYPPVLKATGLYFSQAIIWVKE 307

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           +P+     + F   HE   +      A  +    +A+            W +   +    
Sbjct: 308 HPV--LTRKDFMGNHEWCFYGWREGAAHVFLGPNNAVDV----------WSVKKVNPQS- 354

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                   +H T+KP  L  R +  S++PG+ +LD F GSG++   A++  R    +E+ 
Sbjct: 355 -------MIHLTEKPVELAVRAIQYSSRPGENVLDLFGGSGSTLIGAEQTGRKAYLMELD 407

Query: 255 QDYIDIATKR 264
             Y D+  +R
Sbjct: 408 PLYCDVICER 417


>gi|270265278|ref|ZP_06193539.1| hypothetical protein SOD_m00100 [Serratia odorifera 4Rx13]
 gi|270040682|gb|EFA13785.1| hypothetical protein SOD_m00100 [Serratia odorifera 4Rx13]
          Length = 342

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 39/62 (62%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  ++  I+ +S++PG+++ D F GSG++   A KL R  +G+E++ D  +   +
Sbjct: 277 HPCEKPAEMMEHIISASSRPGEVVADFFMGSGSTIKAAIKLGRIGLGVELEPDRFEQTQR 336

Query: 264 RI 265
            I
Sbjct: 337 EI 338



 Score = 43.9 bits (102), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 19/114 (16%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA- 80
           ++I  ++ + ++ LP  S+DLI  DPPY                   +  WD     EA 
Sbjct: 6   RLINADTTAFIKTLPDNSIDLIATDPPY---------------FRVKSCDWDNQWENEAE 50

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVI-GSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           Y A+  A L+   RVLKPNG+L++  GS   +     +L    F +L+ IVW K
Sbjct: 51  YLAWLDALLVEFWRVLKPNGSLYMFCGS--RLASDTELLVRQRFDVLSHIVWAK 102


>gi|193071376|ref|ZP_03052292.1| DNA methylase [Escherichia coli E110019]
 gi|192955292|gb|EDV85779.1| DNA methylase [Escherichia coli E110019]
 gi|315617974|gb|EFU98567.1| DNA methylase family protein [Escherichia coli 3431]
          Length = 354

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 39/65 (60%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  IG+E++ +  +    
Sbjct: 283 HPCEKPADMLRQIIEASSRPGDLVADFFMGSGSTIKAALSLGRRAIGVELEAERFEQTVS 342

Query: 264 RIASV 268
            I  +
Sbjct: 343 EIREI 347



 Score = 44.7 bits (104), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 23/116 (19%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  ++ LP  SVDLI  DPPY                    + WD  + ++  
Sbjct: 11  ELINADCLEFIQTLPENSVDLIVTDPPY---------------FKVKPEGWD--NQWKGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           D + + WL  C     R+LKP G+L++   +     I  M++   F +LN I+W K
Sbjct: 54  DDYLK-WLDQCLAQFWRLLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAK 107


>gi|153806906|ref|ZP_01959574.1| hypothetical protein BACCAC_01182 [Bacteroides caccae ATCC 43185]
 gi|149131583|gb|EDM22789.1| hypothetical protein BACCAC_01182 [Bacteroides caccae ATCC 43185]
          Length = 254

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 39/66 (59%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+H TQKP  LL R++   T  GD+++DP  GSG++   A +L R   G E+K+ +   A
Sbjct: 181 KVHSTQKPVPLLRRLIEIFTDKGDVVIDPCAGSGSTLLAAAQLGRRAYGFEIKKKFFADA 240

Query: 262 TKRIAS 267
            K + S
Sbjct: 241 NKFVLS 246


>gi|304383947|ref|ZP_07366404.1| DNA (cytosine-5-)-methyltransferase domain protein [Prevotella
           marshii DSM 16973]
 gi|304335025|gb|EFM01298.1| DNA (cytosine-5-)-methyltransferase domain protein [Prevotella
           marshii DSM 16973]
          Length = 648

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 39/62 (62%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           + TQKPEALL RI+ +S+  G ++ D F GSG + AVA +L R FI  ++  + I+    
Sbjct: 314 YSTQKPEALLERIIKASSNEGMLVADFFGGSGVTAAVANRLGRKFIHCDIGINSIETTRD 373

Query: 264 RI 265
           R+
Sbjct: 374 RL 375


>gi|73661337|ref|YP_300118.1| DNA modification methylase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72493852|dbj|BAE17173.1| putative DNA modification methylase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 259

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 37/62 (59%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP + PE L  + ++  +K  +++ DPF G G++   +++  R F GIE++  +I +A  
Sbjct: 33  HPGKFPEELAEKFILFFSKKNEVVFDPFMGVGSTAVASEENNREFKGIELESSFISMANS 92

Query: 264 RI 265
           R+
Sbjct: 93  RL 94


>gi|323956953|gb|EGB52681.1| DNA methylase [Escherichia coli H263]
          Length = 172

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 38/62 (61%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R   G+E++ +  +   +
Sbjct: 103 HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALGRRATGVELETERFEQTVR 162

Query: 264 RI 265
            +
Sbjct: 163 EV 164


>gi|254510701|ref|ZP_05122768.1| DNA methylase [Rhodobacteraceae bacterium KLH11]
 gi|221534412|gb|EEE37400.1| DNA methylase [Rhodobacteraceae bacterium KLH11]
          Length = 386

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 36/61 (59%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           P  L+ R L +    G  +LDPF G+GT+G VA +L+     IE+  +Y DIA +RI S 
Sbjct: 308 PPELVERCLKAGCPQGGKVLDPFGGAGTTGLVADRLQMDATLIELNPEYADIAIRRIESD 367

Query: 269 Q 269
           Q
Sbjct: 368 Q 368


>gi|85860687|ref|YP_462889.1| type II restriction-modification system methylation subunit
           [Syntrophus aciditrophicus SB]
 gi|85723778|gb|ABC78721.1| type II restriction-modification system methylation subunit
           [Syntrophus aciditrophicus SB]
          Length = 361

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 37/66 (56%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           H    PE L +R++      GD +LDPF GSGT+   A+ L R+ IG E+ QD+I    +
Sbjct: 128 HIAMFPEELPARLIKMFAFVGDTVLDPFLGSGTTSMAARNLERNSIGYEINQDFIPAIRQ 187

Query: 264 RIASVQ 269
           ++   Q
Sbjct: 188 KLNVCQ 193


>gi|126444474|ref|YP_001063378.1| DNA methylase [Burkholderia pseudomallei 668]
 gi|126223965|gb|ABN87470.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei 668]
          Length = 232

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 30/45 (66%)

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           D++LDPF GSGT+G  A +  R F GIE++  Y +IA +RI   Q
Sbjct: 167 DMVLDPFMGSGTTGVAAIRAGRKFTGIEIEPKYFEIACRRIEDAQ 211


>gi|323174398|gb|EFZ60023.1| DNA methylase family protein [Escherichia coli LT-68]
          Length = 352

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 39/62 (62%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +++ +S++PGD++ D F GSG++   A  L R  IG+E++ +  +   +
Sbjct: 283 HPCEKPADMLRQMITASSRPGDLVADFFMGSGSTVKAAMALGRRAIGVELEAERFEQTAR 342

Query: 264 RI 265
            +
Sbjct: 343 DV 344



 Score = 44.3 bits (103), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 19/113 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           +I  + +  ++ LP  S+DLI  DPPY  ++ NG                WD ++   E 
Sbjct: 12  LINADCLHFIQSLPDDSIDLIVTDPPYFKVKPNG----------------WDNQWKGDED 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K
Sbjct: 56  YLKWLDHCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAK 107


>gi|149924541|ref|ZP_01912899.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Plesiocystis pacifica SIR-1]
 gi|149814594|gb|EDM74176.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Plesiocystis pacifica SIR-1]
          Length = 569

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 119/292 (40%), Gaps = 61/292 (20%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           D +I G+++  LE L      S DLI+ DPP+     G  +    SL+  V    +   +
Sbjct: 55  DALILGDNLLALEALARDRPGSADLIYIDPPFA---TGSRF----SLIRRVGSKREGDEA 107

Query: 78  FEAYDAFTRAWLLACRRVLK--------------PNGTLWVIGSYHNIFRIGTMLQNLNF 123
                AF  AW      +L+              P G+L+V    H    +G  ++ L  
Sbjct: 108 ELRLPAFDDAWEGGPAGLLRMLDPRLRLLHRLLAPTGSLYV----HVDPTVGHAVKLLLD 163

Query: 124 WILN------DIVWRKSNPMPNFR--GRRFQNAHETLIWASPSPKAKGYTFN-------- 167
            I        +IVWR    +  F+   R +   H+ + +    P+A  +TFN        
Sbjct: 164 EIFGPECFQREIVWRIGW-LSGFKTKARNWIRNHDLIFFYVKDPRA--FTFNKRYVPHPP 220

Query: 168 ----YDALKAANEDVQMRSDW----LIPICSGSERL-----RNKDGEKLH-PTQKPEALL 213
                D   +    V +   W    +    SG E L     ++   EK    TQK E+LL
Sbjct: 221 GYKRRDGKPSKAPGVAIEDVWNANAVEAELSGRESLDSIQIKSFSKEKTGWATQKNESLL 280

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
            RI+ +S+ PGD ++D F GSGT+  VA +L R F   +  +  + I   R+
Sbjct: 281 RRIIEASSNPGDRVVDVFAGSGTAAVVAAELGRRFWACDRAEAAVQIGRGRL 332


>gi|189485518|ref|YP_001956459.1| adenine/cytosine-specific DNA methylase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|170287477|dbj|BAG13998.1| adenine/cytosine-specific DNA methylase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 214

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 95/227 (41%), Gaps = 47/227 (20%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   +  +   ++  +S+DL   DPPYN++                    D F S + 
Sbjct: 5   NKIYNLDCFTFFNQVEKESIDLAIIDPPYNMK----------------KAKGDTFKSHQD 48

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           +  FT  W+ A    LK  G+L++  +  N   I   L +      N I W K + +   
Sbjct: 49  FLYFTFKWINALIPTLKETGSLYIFNTPFNCAYILQYLVDKGLIFQNWITWDKRDGLGTS 108

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKA---ANEDVQMRSD---------WLIPI 188
           +  ++ N  E++++ +   K K + FNYD ++    + E ++  S          W  P 
Sbjct: 109 KT-KYSNGQESILFFT---KNKKHIFNYDEIRVPYESTERIEHASKKGILKNGKRWF-PN 163

Query: 189 CSG----------SERLRNK-DGEKL---HPTQKPEALLSRILVSST 221
             G          SER RNK +G+ +   H   KP  L+ RI+ +S+
Sbjct: 164 DKGRLCGEVWHIVSERHRNKINGKTIKNEHVASKPLELIERIIKASS 210


>gi|15601210|ref|NP_232841.1| haemagglutinin associated protein [Vibrio cholerae O1 biovar eltor
           str. N16961]
 gi|121586498|ref|ZP_01676285.1| haemagglutinin associated protein [Vibrio cholerae 2740-80]
 gi|121726174|ref|ZP_01679472.1| haemagglutinin associated protein [Vibrio cholerae V52]
 gi|147672291|ref|YP_001215657.1| haemagglutinin associated protein [Vibrio cholerae O395]
 gi|153820932|ref|ZP_01973599.1| haemagglutinin associated protein [Vibrio cholerae B33]
 gi|227812021|ref|YP_002812031.1| DNA methylase N-4/N-6 [Vibrio cholerae M66-2]
 gi|229506370|ref|ZP_04395879.1| hemagglutinin associated protein [Vibrio cholerae BX 330286]
 gi|229509496|ref|ZP_04398978.1| hemagglutinin associated protein [Vibrio cholerae B33]
 gi|229516666|ref|ZP_04406113.1| hemagglutinin associated protein [Vibrio cholerae RC9]
 gi|229605937|ref|YP_002876641.1| hemagglutinin associated protein [Vibrio cholerae MJ-1236]
 gi|254849623|ref|ZP_05238973.1| hemagglutinin associated protein [Vibrio cholerae MO10]
 gi|297582334|ref|ZP_06944240.1| hemagglutinin associated protein [Vibrio cholerae RC385]
 gi|298499247|ref|ZP_07009053.1| DNA methylase [Vibrio cholerae MAK 757]
 gi|48357|emb|CAA45727.1| haemagglutinin associated protein [Vibrio cholerae]
 gi|9657850|gb|AAF96353.1| haemagglutinin associated protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121549323|gb|EAX59354.1| haemagglutinin associated protein [Vibrio cholerae 2740-80]
 gi|121631393|gb|EAX63765.1| haemagglutinin associated protein [Vibrio cholerae V52]
 gi|126521515|gb|EAZ78738.1| haemagglutinin associated protein [Vibrio cholerae B33]
 gi|146314674|gb|ABQ19214.1| haemagglutinin associated protein [Vibrio cholerae O395]
 gi|227011163|gb|ACP07374.1| DNA methylase N-4/N-6 [Vibrio cholerae M66-2]
 gi|227015068|gb|ACP11277.1| DNA methylase N-4/N-6 [Vibrio cholerae O395]
 gi|229346547|gb|EEO11518.1| hemagglutinin associated protein [Vibrio cholerae RC9]
 gi|229353446|gb|EEO18384.1| hemagglutinin associated protein [Vibrio cholerae B33]
 gi|229356721|gb|EEO21639.1| hemagglutinin associated protein [Vibrio cholerae BX 330286]
 gi|229372423|gb|ACQ62845.1| hemagglutinin associated protein [Vibrio cholerae MJ-1236]
 gi|254845328|gb|EET23742.1| hemagglutinin associated protein [Vibrio cholerae MO10]
 gi|297533438|gb|EFH72293.1| hemagglutinin associated protein [Vibrio cholerae RC385]
 gi|297541228|gb|EFH77279.1| DNA methylase [Vibrio cholerae MAK 757]
          Length = 230

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 94/234 (40%), Gaps = 33/234 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF--E 79
           KI + +++  L+ L   SVDL   DPPY      +       L ++ + S   FS F   
Sbjct: 16  KIYQMDAVDWLKTLENCSVDLFITDPPYESLEKYRQIGTTTRLKESKSSSNQWFSVFPNT 75

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            ++   R       RVLK     ++      +F    + +++ F     IVW K      
Sbjct: 76  RFEELFRE----VYRVLKKGSHFYLFCDQETMFLAKPIAESVGFKFWKPIVWDKCAIG-- 129

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
             G  ++  +E +++     +                     +D  +P     + L  K 
Sbjct: 130 -MGYHYRARYEFILFFEKGKRK-------------------LNDLSVP-----DVLEYKR 164

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
             K +PT+KP  LL  ++  S+   +I+ D FFGSG++   A  L R +IG ++
Sbjct: 165 VWKGYPTEKPVELLEVLIRQSSSENEIVADSFFGSGSTLIAANNLSRKYIGCDI 218


>gi|255746753|ref|ZP_05420700.1| hemagglutinin associated protein [Vibrio cholera CIRS 101]
 gi|262153440|ref|ZP_06028572.1| N6 adenine-specific DNA methyltransferase [Vibrio cholerae INDRE
           91/1]
 gi|262168142|ref|ZP_06035840.1| N6 adenine-specific DNA methyltransferase [Vibrio cholerae RC27]
 gi|255736507|gb|EET91905.1| hemagglutinin associated protein [Vibrio cholera CIRS 101]
 gi|262023385|gb|EEY42088.1| N6 adenine-specific DNA methyltransferase [Vibrio cholerae RC27]
 gi|262030797|gb|EEY49429.1| N6 adenine-specific DNA methyltransferase [Vibrio cholerae INDRE
           91/1]
          Length = 217

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 92/234 (39%), Gaps = 33/234 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF--E 79
           KI + +++  L+ L   SVDL   DPPY      +       L ++ + S   FS F   
Sbjct: 3   KIYQMDAVDWLKTLENCSVDLFITDPPYESLEKYRQIGTTTRLKESKSSSNQWFSVFPNT 62

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            ++   R       RVLK     ++      +F    + +++ F     IVW K      
Sbjct: 63  RFEELFRE----VYRVLKKGSHFYLFCDQETMFLAKPIAESVGFKFWKPIVWDKCAIGMG 118

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           +                       Y   Y+ +    +  +  +D  +P     + L  K 
Sbjct: 119 YH----------------------YRARYEFILFFEKGKRKLNDLSVP-----DVLEYKR 151

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
             K +PT+KP  LL  ++  S+   +I+ D FFGSG++   A  L R +IG ++
Sbjct: 152 VWKGYPTEKPVELLEVLIRQSSSENEIVADSFFGSGSTLIAANNLSRKYIGCDI 205


>gi|33770568|ref|NP_892105.1| DNA adenine-methylase [Yersinia phage PY54]
 gi|33636151|emb|CAD91820.1| DNA adenine-methylase [Yersinia phage PY54]
          Length = 357

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 37/53 (69%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           HP +KP  ++  I+ +ST+PGD++ D F GSG +   A++L R  +G+E++++
Sbjct: 289 HPCEKPLPMMLDIIAASTRPGDLVADFFMGSGATIKAAEQLGRRSLGVELEEE 341



 Score = 43.1 bits (100), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 17/112 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAY 81
           ++  +S+  ++ LP   +D I  DPPY        YR         ++SWD +++S   +
Sbjct: 12  LVHADSLQYIKTLPDNYIDAIITDPPY--------YR-------VKSNSWDNQWASVPDF 56

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
            A+   +     RVLKPNG+L++      +     +L    F +LN IVW K
Sbjct: 57  LAWLDEFFAEFWRVLKPNGSLYLFCG-PKLSADTEILMRDRFNVLNHIVWAK 107


>gi|261258281|ref|ZP_05950814.1| DNA methylase [Escherichia coli O157:H7 str. FRIK966]
          Length = 294

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 38/62 (61%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R   G+E++ +  +   +
Sbjct: 225 HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALGRRATGVELETERFEQTVR 284

Query: 264 RI 265
            +
Sbjct: 285 EV 286


>gi|15801505|ref|NP_287522.1| putative DNA adenine methyltransferase encoded by prophage CP-933O
           [Escherichia coli O157:H7 EDL933]
 gi|15831034|ref|NP_309807.1| DNA methylase [Escherichia coli O157:H7 str. Sakai]
 gi|195939953|ref|ZP_03085335.1| putative DNA methylase [Escherichia coli O157:H7 str. EC4024]
 gi|208810880|ref|ZP_03252713.1| DNA methylase [Escherichia coli O157:H7 str. EC4206]
 gi|208816213|ref|ZP_03257392.1| DNA methylase [Escherichia coli O157:H7 str. EC4045]
 gi|208818296|ref|ZP_03258616.1| DNA methylase [Escherichia coli O157:H7 str. EC4042]
 gi|209399852|ref|YP_002270209.1| DNA methylase [Escherichia coli O157:H7 str. EC4115]
 gi|254792748|ref|YP_003077585.1| putative DNA adenine methyltransferase encoded by prophage CP-933O
           [Escherichia coli O157:H7 str. TW14359]
 gi|261226550|ref|ZP_05940831.1| putative DNA adenine methyltransferase encoded by prophage CP-933O
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261254841|ref|ZP_05947374.1| putative DNA adenine methyltransferase encoded by prophage CP-933O
           [Escherichia coli O157:H7 str. FRIK966]
 gi|12515007|gb|AAG56134.1|AE005344_10 putative DNA adenine methyltransferase encoded by prophage CP-933O
           [Escherichia coli O157:H7 str. EDL933]
 gi|13361245|dbj|BAB35203.1| putative DNA methylase [Escherichia coli O157:H7 str. Sakai]
 gi|208724386|gb|EDZ74094.1| DNA methylase [Escherichia coli O157:H7 str. EC4206]
 gi|208732861|gb|EDZ81549.1| DNA methylase [Escherichia coli O157:H7 str. EC4045]
 gi|208738419|gb|EDZ86101.1| DNA methylase [Escherichia coli O157:H7 str. EC4042]
 gi|209161252|gb|ACI38685.1| DNA methylase [Escherichia coli O157:H7 str. EC4115]
 gi|254592148|gb|ACT71509.1| putative DNA adenine methyltransferase encoded by prophage CP-933O
           [Escherichia coli O157:H7 str. TW14359]
 gi|320189851|gb|EFW64504.1| putative DNA methylase [Escherichia coli O157:H7 str. EC1212]
 gi|326344501|gb|EGD68252.1| putative DNA methylase [Escherichia coli O157:H7 str. 1044]
          Length = 352

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 39/65 (60%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R   G+E++ +  +   +
Sbjct: 283 HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALGRRATGVELETERFEQTVR 342

Query: 264 RIASV 268
            +  +
Sbjct: 343 EVQDL 347



 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 17/113 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  +  LP  SVDLI  DPPY                    + WD +++  E 
Sbjct: 11  ELINADCLEFMRSLPENSVDLIVTDPPY---------------FKVKPEGWDNQWAGDED 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           Y  +    L    RVLKP G+L++    H +     ++    F +LN I+W K
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDTEIMMRERFNVLNHIIWAK 107


>gi|227888077|ref|ZP_04005882.1| DNA methylase [Escherichia coli 83972]
 gi|227834923|gb|EEJ45389.1| DNA methylase [Escherichia coli 83972]
 gi|307552955|gb|ADN45730.1| DNA methylase [Escherichia coli ABU 83972]
 gi|315290929|gb|EFU50294.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 153-1]
          Length = 352

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 38/62 (61%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R   G+E++ +  +   +
Sbjct: 283 HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALGRRATGVELETERFEQTVR 342

Query: 264 RI 265
            +
Sbjct: 343 EV 344



 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 70/166 (42%), Gaps = 36/166 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  +  LP  SVDLI  DPPY                    + WD  + ++  
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPY---------------FKVKPEGWD--NQWKGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           D + + WL  C     RVLKP G+L++   +     I  M++   F +LN I+W K  P 
Sbjct: 54  DDYLK-WLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAK--PS 109

Query: 138 PNFRG------RRFQNAHETLIWASP-----SPKAKGYTFNYDALK 172
             + G      R +  A E +++A        PK  GY     ALK
Sbjct: 110 GRWNGCNKESLRAYFPATERILFAEHYQGPYRPKDAGYEAKGRALK 155


>gi|22001112|gb|AAM88315.1|AF479829_4 unknown [Escherichia coli]
          Length = 352

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 38/62 (61%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R   G+E++ +  +   +
Sbjct: 283 HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALGRRATGVELETERFEQTVR 342

Query: 264 RI 265
            +
Sbjct: 343 EV 344



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 30/163 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  ++ LP  SVDLI  DPPY                    + WD +++  E 
Sbjct: 11  ELINADCLEFIQTLPENSVDLIVTDPPY---------------FKVKPEGWDNQWTGDED 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K  P   +
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAK--PSGRW 112

Query: 141 RG------RRFQNAHETLIWASP-----SPKAKGYTFNYDALK 172
            G      R +  A E +++A        PK  GY     ALK
Sbjct: 113 NGCNKESLRAYFPATERILFAEHYQGPYRPKDAGYEAKGRALK 155


>gi|317179342|dbj|BAJ57130.1| adenine specific DNA methyltransferase [Helicobacter pylori F30]
          Length = 252

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 99/249 (39%), Gaps = 34/249 (13%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
           SVLE       DL    PPYNL +  Q                + F +++ Y  + + WL
Sbjct: 18  SVLETFEKGFYDLCITSPPYNLSIEYQ--------------GSNDFRAYDDYLNWCKNWL 63

Query: 90  LACRRVLKPNGTLWV----IGSYHNIFRIGT----MLQNLNFWILNDIVWRKSNPMPNFR 141
             C    K    L +      + H    +G     + +   +   N I+W +SN      
Sbjct: 64  KNCYFWGKEQARLCLNVPLDTNKHGKQSLGADMIAIAKECGWKYQNTIIWNESNI----- 118

Query: 142 GRRFQNAHETLIWASPS----PKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
            RR   A  + + AS S    P      F  +A K   +   +  +  +   +G      
Sbjct: 119 SRR--TAWGSWLQASASYAIAPVELIVVFYKNAYKRQKQTSTISKEEFLLYTNGLWSFSG 176

Query: 198 KDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           +  ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E++++
Sbjct: 177 ESKKRLKHPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEIEKE 236

Query: 257 YIDIATKRI 265
           Y +++ KRI
Sbjct: 237 YCELSKKRI 245


>gi|260843572|ref|YP_003221350.1| putative DNA methylase [Escherichia coli O103:H2 str. 12009]
 gi|257758719|dbj|BAI30216.1| putative DNA methylase [Escherichia coli O103:H2 str. 12009]
          Length = 352

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 38/62 (61%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R   G+E++ +  +   +
Sbjct: 283 HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALGRRATGVELETERFEQTVR 342

Query: 264 RI 265
            +
Sbjct: 343 EV 344



 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 70/166 (42%), Gaps = 36/166 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +++  + +  +  LP  SVDLI  DPPY                    + WD  + ++  
Sbjct: 11  ELVNADCLEFIRSLPENSVDLIVTDPPY---------------FKVKPEGWD--NQWKGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           D + + WL  C     RVLKP G+L++   +     I  M++   F +LN I+W K  P 
Sbjct: 54  DDYLK-WLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAK--PS 109

Query: 138 PNFRG------RRFQNAHETLIWASP-----SPKAKGYTFNYDALK 172
             + G      R +  A E +++A        PK  GY     ALK
Sbjct: 110 GRWNGCNKESLRAYFPATERILFAEHYQGPYRPKDAGYEAKGRALK 155


>gi|291460777|ref|ZP_06600167.1| DNA (cytosine-5-)-methyltransferase [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291416736|gb|EFE90455.1| DNA (cytosine-5-)-methyltransferase [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 292

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 106/267 (39%), Gaps = 51/267 (19%)

Query: 39  SVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK 97
           SV LI   PPY NL+   +  R D+ L   + + + +F      D   + W   C RVL 
Sbjct: 21  SVHLILTSPPYFNLK---EYRRGDNQL--GIINDYQQFV-----DELEKVWK-ECYRVLV 69

Query: 98  PNGTL-WVIGSY---------HNIF----RIGTMLQNLNFWILNDIVWRK-------SNP 136
           P G +  V+G           H +      I    + + F  LN I+W K       +N 
Sbjct: 70  PGGRIVCVVGDVCLSRRKYGRHVVMPLHSDIAVSCRRIGFDNLNPILWHKISNAAFEANT 129

Query: 137 MPNFRGRRFQ-------NAHETLIWASPSPKAKGYTFNYDALKAANEDVQ--MRSDWLIP 187
             +  G+ ++       +    L+   P    K      +  K   ED Q      W +P
Sbjct: 130 NSSILGKPYEPNAIIKNDMEYILMERKPGGYRKPTEQQREKSKIDKEDFQSWFTQIWEMP 189

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
             S       ++G   HP   P  L +R++   +   D++LDPF GSGT+   A    RS
Sbjct: 190 GAS------TRNG---HPAPFPLELATRLVKMFSFVDDVVLDPFCGSGTTMLAAINEGRS 240

Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNI 274
            +G+E ++ Y      RI   + L +I
Sbjct: 241 AVGVEAEEYYCRYTLDRIEKEKTLFHI 267


>gi|187730991|ref|YP_001879898.1| DNA methylase [Shigella boydii CDC 3083-94]
 gi|187427983|gb|ACD07257.1| DNA methylase [Shigella boydii CDC 3083-94]
          Length = 349

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 35/51 (68%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  IG+E++
Sbjct: 283 HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAALALGRRAIGVELE 333



 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 70/166 (42%), Gaps = 36/166 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  +  LP  SVDLI  DPPY                    + WD  + ++  
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPY---------------FKVKPEGWD--NQWKGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           D + + WL  C     RVLKP G+L++   +     I  M++   F +LN I+W K  P 
Sbjct: 54  DDYLK-WLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAK--PS 109

Query: 138 PNFRG------RRFQNAHETLIWASP-----SPKAKGYTFNYDALK 172
             + G      R +  A E +++A        PK  GY     ALK
Sbjct: 110 GRWNGCNKESLRAYFPATERILFAEHYQGPYRPKDAGYEAKGRALK 155


>gi|168751107|ref|ZP_02776129.1| DNA methylase [Escherichia coli O157:H7 str. EC4113]
 gi|168783722|ref|ZP_02808729.1| DNA methylase [Escherichia coli O157:H7 str. EC4076]
 gi|195939154|ref|ZP_03084536.1| putative DNA methylase [Escherichia coli O157:H7 str. EC4024]
 gi|208811074|ref|ZP_03252907.1| DNA methylase [Escherichia coli O157:H7 str. EC4206]
 gi|208815815|ref|ZP_03256994.1| DNA methylase [Escherichia coli O157:H7 str. EC4045]
 gi|208820893|ref|ZP_03261213.1| DNA methylase [Escherichia coli O157:H7 str. EC4042]
 gi|209396181|ref|YP_002271441.1| DNA methylase [Escherichia coli O157:H7 str. EC4115]
 gi|209397302|ref|YP_002270274.1| DNA methylase [Escherichia coli O157:H7 str. EC4115]
 gi|254792813|ref|YP_003077650.1| DNA methylase [Escherichia coli O157:H7 str. TW14359]
 gi|188014746|gb|EDU52868.1| DNA methylase [Escherichia coli O157:H7 str. EC4113]
 gi|188998945|gb|EDU67931.1| DNA methylase [Escherichia coli O157:H7 str. EC4076]
 gi|208724580|gb|EDZ74288.1| DNA methylase [Escherichia coli O157:H7 str. EC4206]
 gi|208732463|gb|EDZ81151.1| DNA methylase [Escherichia coli O157:H7 str. EC4045]
 gi|208741016|gb|EDZ88698.1| DNA methylase [Escherichia coli O157:H7 str. EC4042]
 gi|209157581|gb|ACI35014.1| DNA methylase [Escherichia coli O157:H7 str. EC4115]
 gi|209158702|gb|ACI36135.1| DNA methylase [Escherichia coli O157:H7 str. EC4115]
 gi|254592213|gb|ACT71574.1| DNA methylase [Escherichia coli O157:H7 str. TW14359]
          Length = 352

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 38/62 (61%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R   G+E++ +  +   +
Sbjct: 283 HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALGRRATGVELETERFEQTVR 342

Query: 264 RI 265
            +
Sbjct: 343 EV 344



 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 68/163 (41%), Gaps = 30/163 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  +  LP  SVDLI  DPPY                    + WD +++  E 
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPY---------------FKVKPEGWDNQWTGDED 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K  P   +
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAK--PSGRW 112

Query: 141 RG------RRFQNAHETLIWASP-----SPKAKGYTFNYDALK 172
            G      R +  A E +++A        PK  GY     ALK
Sbjct: 113 NGCNKESLRAYFPATERILFAEHYQGPYRPKDAGYEAKGRALK 155


>gi|124004362|ref|ZP_01689208.1| prophage LambdaSa04, DNA methylase [Microscilla marina ATCC 23134]
 gi|123990432|gb|EAY29931.1| prophage LambdaSa04, DNA methylase [Microscilla marina ATCC 23134]
          Length = 495

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IAT 262
           HPT KP  +++  L+ +T  GDI LD F GSGT+   A++ RR   G+E +  Y+  I T
Sbjct: 403 HPTPKPVRMIADALLDTTNEGDIALDCFLGSGTTLMAAERTRRICYGVEYEPGYMQGILT 462

Query: 263 KRIASVQ 269
           + I   Q
Sbjct: 463 RFIHHCQ 469


>gi|396849|emb|CAA45447.1| unnamed protein product [Vibrio cholerae]
 gi|746236|prf||2017285G hemagglutinin
          Length = 217

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 96/236 (40%), Gaps = 37/236 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KI + +++  L+ L   SVDL   DPPY    + + YR    +V        K SS + +
Sbjct: 3   KIYQMDAVDWLKTLENCSVDLFITDPPYE---SLEKYR---QIVTTTRLKESKSSSNQWF 56

Query: 82  DAF--TRAWLL--ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
             F  TR   L     RVLK     ++      +F    + +++ F     IVW K    
Sbjct: 57  SVFPNTRFEELFREVYRVLKKGSHFYLFCDQETMFLAKPIAESVGFKFWKPIVWDKCRIG 116

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
               G  ++  +E +++     +                     +D  +P     + L  
Sbjct: 117 ---MGYHYRARYEFILFFEKGKRK-------------------LNDLSVP-----DVLEY 149

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           K   K +PT+KP  LL  ++  S+   +I+ D FFGSG +   A  L R +IG ++
Sbjct: 150 KRVWKGYPTEKPVELLEVLIRQSSSENEIVADSFFGSGATLIAANNLSRKYIGCDI 205


>gi|323179216|gb|EFZ64786.1| DNA methylase family protein [Escherichia coli 1180]
          Length = 352

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 39/65 (60%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R   G+E++ +  +   +
Sbjct: 283 HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALGRRATGVELETERFEQTVR 342

Query: 264 RIASV 268
            +  +
Sbjct: 343 EVQDL 347



 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 70/166 (42%), Gaps = 36/166 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  +  LP  SVDLI  DPPY                    + WD  + ++  
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPY---------------FKVKPEGWD--NQWKGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           D + + WL  C     RVLKP G+L++   +     I  M++   F +LN I+W K  P 
Sbjct: 54  DDYLK-WLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMREC-FSVLNHIIWAK--PS 109

Query: 138 PNFRG------RRFQNAHETLIWASP-----SPKAKGYTFNYDALK 172
             + G      R +  A E +++A        PK  GY     ALK
Sbjct: 110 GRWNGCNKESLRAYFPATERILFAEHYQGPYRPKDAGYEAKGRALK 155


>gi|312874131|ref|ZP_07734165.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF
           2052A-d]
 gi|311090201|gb|EFQ48611.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF
           2052A-d]
          Length = 570

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           PE ++ +IL   T  GD++LD F GS ++ AVA K+ R +IGIEM      +   R+ +V
Sbjct: 344 PEVMIKQILEYYTNVGDLVLDSFLGSASTIAVAHKMNRRYIGIEMGDHAYTLCKTRLDNV 403


>gi|261227063|ref|ZP_05941344.1| DNA methylase [Escherichia coli O157:H7 str. FRIK2000]
          Length = 352

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 39/65 (60%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R   G+E++ +  +   +
Sbjct: 283 HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALGRRATGVELETERFEQTVR 342

Query: 264 RIASV 268
            +  +
Sbjct: 343 EVQDL 347



 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 70/166 (42%), Gaps = 36/166 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  +  LP  SVDLI  DPPY                    + WD  + ++  
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPY---------------FKVKPEGWD--NQWKGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           D + + WL  C     RVLKP G+L++   +     I  M++   F +LN I+W K  P 
Sbjct: 54  DDYLK-WLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAK--PS 109

Query: 138 PNFRG------RRFQNAHETLIWASP-----SPKAKGYTFNYDALK 172
             + G      R +  A E +++A        PK  GY     ALK
Sbjct: 110 GRWNGCNKESLRAYFPATERILFAEHYQGPYRPKDAGYEAKGRALK 155


>gi|168803035|ref|ZP_02828042.1| DNA methylase [Escherichia coli O157:H7 str. EC508]
 gi|189375205|gb|EDU93621.1| DNA methylase [Escherichia coli O157:H7 str. EC508]
          Length = 352

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 39/65 (60%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R   G+E++ +  +   +
Sbjct: 283 HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALGRRATGVELETERFEQTVR 342

Query: 264 RIASV 268
            +  +
Sbjct: 343 EVQDL 347



 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 68/163 (41%), Gaps = 30/163 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  +  LP  SVDLI  DPPY                    + WD +++  E 
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPY---------------FKVKPEGWDNQWTGDED 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K  P   +
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAK--PSGRW 112

Query: 141 RG------RRFQNAHETLIWASP-----SPKAKGYTFNYDALK 172
            G      R +  A E +++A        PK  GY     ALK
Sbjct: 113 NGCNKESLRAYFPATERILFAEHYQGPYRPKDAGYEAKGRALK 155


>gi|172058382|ref|YP_001814842.1| DNA methylase N-4/N-6 domain-containing protein [Exiguobacterium
           sibiricum 255-15]
 gi|171990903|gb|ACB61825.1| DNA methylase N-4/N-6 domain protein [Exiguobacterium sibiricum
           255-15]
          Length = 492

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 22/154 (14%)

Query: 124 WILND-IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE------ 176
           W+  D I+W K   +P  R  + +N  E ++  +   K+  Y +  D +K  ++      
Sbjct: 116 WVHQDTIIWDKGKTLPWSRKGQMRNVFEYVLMFTKG-KSTSYKYYIDRIKTTDKLKEWWI 174

Query: 177 DVQMRS-----------DWLIPICSGSERLRNKDGEK--LHPTQKPEALLSRILVSSTKP 223
           D   R            ++ IP   GS   +   GE+   H    P  +++R+++ +T  
Sbjct: 175 DYPERYGPQGKVPDNIWEFYIP-TQGSWGSKKDFGEEEFRHACPFPPEMMARLILLATDE 233

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
            D++ DPF G+G   A A+K+ R F+G +   DY
Sbjct: 234 NDVVFDPFAGTGVLLATAEKMNRRFLGFDTNPDY 267


>gi|300724259|ref|YP_003713577.1| putative DNA methylase [Xenorhabdus nematophila ATCC 19061]
 gi|297630794|emb|CBJ91463.1| putative DNA methylase [Xenorhabdus nematophila ATCC 19061]
          Length = 345

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 36/53 (67%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           HP +KP  L++ I+ SS++ GD++ D F GSG +   A KL R  +G+E++++
Sbjct: 278 HPCEKPADLMAHIIQSSSREGDLVADFFMGSGATLKTALKLNRRVLGVELEEE 330



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 74/166 (44%), Gaps = 34/166 (20%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAY 81
           +I  +S+  ++ LP   +DLI  DPPY        +R     V A   SWD +++   AY
Sbjct: 8   LINDDSLKFIKTLPDNCIDLIATDPPY--------FR-----VKAC--SWDNQWADVTAY 52

Query: 82  DAFTRAWLLACRRVLKPNGTLWVI-GSYHNIFRIGTMLQNLNFWILNDIV-------WRK 133
            A+    L  C RVLKPNG+L++  GS   +     +L    F +LN I+       WR+
Sbjct: 53  LAWLDELLAECWRVLKPNGSLYMFCGS--RLAADTELLVRERFNVLNHIICAKPSGPWRR 110

Query: 134 SNPMPNFRGRRFQNAHETLIWASP-----SPKAKGYTFNYDALKAA 174
            N       R +  A E +I+A        PK  GY      LK +
Sbjct: 111 QN---KESLRMYFPATERIIFAEHYQGPYHPKGDGYYKQCQDLKQS 153


>gi|260867672|ref|YP_003234074.1| putative DNA methylase [Escherichia coli O111:H- str. 11128]
 gi|257764028|dbj|BAI35523.1| putative DNA methylase [Escherichia coli O111:H- str. 11128]
          Length = 352

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 39/65 (60%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R   G+E++ +  +   +
Sbjct: 283 HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALGRRATGVELETERFEQTVR 342

Query: 264 RIASV 268
            +  +
Sbjct: 343 EVQDL 347



 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 70/166 (42%), Gaps = 36/166 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  +  LP  SVDLI  DPPY                    + WD  + ++  
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPY---------------FKVKPEGWD--NQWKGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           D + + WL  C     RVLKP G+L++   +     I  M++   F +LN I+W K  P 
Sbjct: 54  DDYLK-WLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAK--PS 109

Query: 138 PNFRG------RRFQNAHETLIWASP-----SPKAKGYTFNYDALK 172
             + G      R +  A E +++A        PK  GY     ALK
Sbjct: 110 GRWNGCNKESLRAYFPATERILFAEHYQGPYRPKDAGYEAKGRALK 155


>gi|218694475|ref|YP_002402142.1| putative DNA adenine methyltransferase ( DNA methylase) from phage
           origin [Escherichia coli 55989]
 gi|218351207|emb|CAU96911.1| putative DNA adenine methyltransferase ( DNA methylase) from phage
           origin [Escherichia coli 55989]
          Length = 349

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 35/51 (68%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  IG+E++
Sbjct: 283 HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAALALGRRAIGVELE 333



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 70/166 (42%), Gaps = 36/166 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  +  LP  SVDLI  DPPY                    + WD  + ++  
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPY---------------FKVKPEGWD--NQWKGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           D + + WL  C     RVLKP G+L++   +     I  M++   F +LN I+W K  P 
Sbjct: 54  DDYLK-WLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAK--PS 109

Query: 138 PNFRG------RRFQNAHETLIWASP-----SPKAKGYTFNYDALK 172
             + G      R +  A E +++A        PK  GY     ALK
Sbjct: 110 GRWNGCNKESLRAYFPATERILFAEHYQGPYRPKDAGYAAKGSALK 155


>gi|170770051|ref|ZP_02904504.1| DNA methylase [Escherichia albertii TW07627]
 gi|256023044|ref|ZP_05436909.1| putative DNA adenine methyltransferase ( DNA methylase) from phage
           origin [Escherichia sp. 4_1_40B]
 gi|170121117|gb|EDS90048.1| DNA methylase [Escherichia albertii TW07627]
 gi|284921102|emb|CBG34167.1| phage DNA adenine-methylase [Escherichia coli 042]
          Length = 349

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 35/51 (68%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  IG+E++
Sbjct: 283 HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAALALGRRAIGVELE 333



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 70/166 (42%), Gaps = 36/166 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  +  LP  SVDLI  DPPY                    + WD  + ++  
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPY---------------FKVKPEGWD--NQWKGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           D + + WL  C     RVLKP G+L++   +     I  M++   F +LN I+W K  P 
Sbjct: 54  DDYLK-WLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAK--PS 109

Query: 138 PNFRG------RRFQNAHETLIWASP-----SPKAKGYTFNYDALK 172
             + G      R +  A E +++A        PK  GY     ALK
Sbjct: 110 GRWNGCNKESLRAYFPATERILFAEHYQGPYRPKDAGYAAKGSALK 155


>gi|160901891|ref|YP_001567472.1| DNA methylase N-4/N-6 domain-containing protein [Petrotoga mobilis
           SJ95]
 gi|160359535|gb|ABX31149.1| DNA methylase N-4/N-6 domain protein [Petrotoga mobilis SJ95]
          Length = 338

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 34/54 (62%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           HP + P  L S  +   T  GD++LDPF GS T+G  A+KL+R +I IE  ++Y
Sbjct: 249 HPARMPLELASFFIEFLTDEGDLVLDPFGGSNTTGFCAEKLKRKWISIEANEEY 302


>gi|46402138|ref|YP_006632.1| putative DNA adenine methylase [Klebsiella phage phiKO2]
 gi|40218282|gb|AAR83068.1| putative DNA adenine methylase [Klebsiella phage phiKO2]
          Length = 353

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 36/53 (67%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           HP +KP  ++  I+ +ST+PGD++ D F GSG +   A +L R  IG+E++++
Sbjct: 289 HPCEKPLQMMLDIISASTRPGDVVADFFMGSGATIKAALQLGREAIGVELEEE 341



 Score = 43.1 bits (100), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 26/131 (19%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
           +N++ IN  Q         ++  +S+  ++ LP  S+D I  DPPY        YR    
Sbjct: 2   ENTVKINSAQ---------LVHADSLEFIKTLPDNSIDAIITDPPY--------YR---- 40

Query: 64  LVDAVTDSWD-KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                 ++WD ++ S   Y A+   +     RVLKP G+L+V      +     +L    
Sbjct: 41  ---VKANAWDNQWPSVTDYLAWLDEFFAEFWRVLKPAGSLYVFCG-PKLSSDTELLLRDR 96

Query: 123 FWILNDIVWRK 133
           F +LN I+W K
Sbjct: 97  FNVLNHIIWAK 107


>gi|238024955|ref|YP_002909187.1| DNA methyltransferase [Burkholderia glumae BGR1]
 gi|237879620|gb|ACR31952.1| DNA methyltransferase [Burkholderia glumae BGR1]
          Length = 380

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 74/177 (41%), Gaps = 43/177 (24%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS------ 76
           ++ G++++VL+ LP + +D     PPY                      W K        
Sbjct: 51  LLNGDALNVLQALPDECIDCAMTSPPY----------------------WGKREYENGGI 88

Query: 77  SFEA-YDAFTR---AWLLACRRVLKPNGTLWV-IGSYHN-------IFRIGTMLQNLNFW 124
             EA Y  F R   A  L  +RVLKP G+ W+ +G  ++        +R+   L +   W
Sbjct: 89  GLEADYRDFVRDLAAIFLELKRVLKPTGSFWLNLGDTYDGKGLLGIPWRVAFELTDNQGW 148

Query: 125 IL-NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
            + N +VW K     +    R  N HE L       KAKGY +N DA+++   + ++
Sbjct: 149 TMRNSVVWNKLKGGMDNSKDRLANVHENLFHF--VKKAKGYYYNADAIRSKPREAKV 203



 Score = 44.3 bits (103), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 39/65 (60%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           H    P  L  R L+++  P  ++LDPF G+GT+   A+++    IGI++ + Y++++ +
Sbjct: 315 HFAPYPVDLCRRPLLATCPPRGVVLDPFCGTGTTLLAARQIGLKSIGIDISRQYLELSQE 374

Query: 264 RIASV 268
           R  S+
Sbjct: 375 RCNSL 379


>gi|187732924|ref|YP_001880706.1| DNA methylase [Shigella boydii CDC 3083-94]
 gi|187429916|gb|ACD09190.1| DNA methylase [Shigella boydii CDC 3083-94]
          Length = 391

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 38/62 (61%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ + ++PGD+I D F GSG++   A  L R  IG+E++ +  +   +
Sbjct: 322 HPCEKPAEMLQQIISAGSRPGDLIADFFMGSGSTVKAALALGRRAIGVELETERFEQTVR 381

Query: 264 RI 265
            +
Sbjct: 382 EV 383



 Score = 44.3 bits (103), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 36/164 (21%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           +  + +  +  LP  SVDLI  DPPY                    + WD  + ++  D 
Sbjct: 52  LPADCLEFIWSLPENSVDLIVTDPPY---------------FKVKPEGWD--NQWKGDDD 94

Query: 84  FTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           + + WL  C     RVLKP G+L++   +     I  M++   F +LN I+W K  P   
Sbjct: 95  YLK-WLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAK--PSGR 150

Query: 140 FRG------RRFQNAHETLIWASP-----SPKAKGYTFNYDALK 172
           + G      R +  A E +++A        PK  GY     ALK
Sbjct: 151 WNGCNKESLRAYFPATERILFAEHYQGPYRPKDAGYAAKGSALK 194


>gi|323962523|gb|EGB58103.1| DNA methylase [Escherichia coli H489]
          Length = 349

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 35/51 (68%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  IG+E++
Sbjct: 283 HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAALALGRRAIGVELE 333



 Score = 45.4 bits (106), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 23/116 (19%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  +  LP  SVDLI  DPPY                    + WD  + ++  
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPY---------------FKVKPEGWD--NQWKGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           D + + WL  C     RVLKP G+L++   +     I  M++   F +LN I+W K
Sbjct: 54  DDYLK-WLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAK 107


>gi|309793314|ref|ZP_07687741.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 145-7]
 gi|308122901|gb|EFO60163.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 145-7]
          Length = 349

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 35/51 (68%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  IG+E++
Sbjct: 283 HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAALALGRRAIGVELE 333



 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 70/166 (42%), Gaps = 36/166 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  +  LP  SVDLI  DPPY                    + WD  + ++  
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPY---------------FKVKPEGWD--NQWKGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           D + + WL  C     RVLKP G+L++   +     I  M++   F +LN I+W K  P 
Sbjct: 54  DDYLK-WLDQCLAQFWRVLKPVGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAK--PS 109

Query: 138 PNFRG------RRFQNAHETLIWASP-----SPKAKGYTFNYDALK 172
             + G      R +  A E +++A        PK  GY     ALK
Sbjct: 110 GRWNGCNKESLRAYFPATERILFAEHYQGPYRPKDAGYAAKGSALK 155


>gi|218688833|ref|YP_002397045.1| putative DNA adenine methyltransferase ( DNA methylase) from phage
           origin [Escherichia coli ED1a]
 gi|218426397|emb|CAR07223.1| putative DNA adenine methyltransferase ( DNA methylase) from phage
           origin [Escherichia coli ED1a]
          Length = 352

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 39/65 (60%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R   G+E++ +  +   +
Sbjct: 283 HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALGRRATGVELETERFEQTVR 342

Query: 264 RIASV 268
            +  +
Sbjct: 343 EVQDL 347



 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 69/166 (41%), Gaps = 36/166 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  +   P  SVDLI  DPPY                    + WD  + ++  
Sbjct: 11  ELINADCLEFIRSFPENSVDLIVTDPPY---------------FKVKPEGWD--NQWKGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           D + + WL  C     RVLKP G+L++   +     I  M++   F +LN I+W K  P 
Sbjct: 54  DDYLK-WLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAK--PS 109

Query: 138 PNFRG------RRFQNAHETLIWASP-----SPKAKGYTFNYDALK 172
             + G      R +  A E +++A        PK  GY     ALK
Sbjct: 110 GRWNGCNKESLRAYFPATERILFAEHYQGPYRPKDAGYEAKGRALK 155


>gi|209919268|ref|YP_002293352.1| putative phage DNA methylase [Escherichia coli SE11]
 gi|209912527|dbj|BAG77601.1| putative phage DNA methylase [Escherichia coli SE11]
          Length = 348

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S+ PGD++ D F GSG++   A  L R  IG+E +++  +    
Sbjct: 283 HPCEKPADMLRQIITASSHPGDLVADFFMGSGSTIKAALSLGRHAIGVEQEEERFNQTVS 342

Query: 264 RI 265
            I
Sbjct: 343 EI 344



 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 23/116 (19%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  ++ LP  SVDLI  DPPY                    + WD  + ++  
Sbjct: 11  ELINADCLEFIQTLPENSVDLIVTDPPY---------------FKVKPEGWD--NQWKGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           D + + WL  C     RVLKP G+L++   +     I  M++   F +LN I+W K
Sbjct: 54  DDYLK-WLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAK 107


>gi|118595064|ref|ZP_01552411.1| DNA methylase N-4/N-6 [Methylophilales bacterium HTCC2181]
 gi|118440842|gb|EAV47469.1| DNA methylase N-4/N-6 [Methylophilales bacterium HTCC2181]
          Length = 380

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 119/302 (39%), Gaps = 71/302 (23%)

Query: 22  KIIKGNSISVLEKLP-AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           KII G+S+  + K    KSV+LI   PP+ L L+ + Y  ++S               E 
Sbjct: 81  KIICGDSLKWMAKAENKKSVNLIVTSPPFGL-LSKKSYGNENS---------------EN 124

Query: 81  YDAFTRAWLLACRRVLKPNGTL-------WVIGS-----YHNIFRIGTML-QNLNFWILN 127
           Y  + R++  +  +VL  +G+L       W  G      YH  F++  ML +   F++  
Sbjct: 125 YCDWFRSFAESFNQVLADDGSLVIDIQGVWSKGIPARSLYH--FKLLQMLCEEYGFYLCQ 182

Query: 128 DIVWRKSNPMPN------FRGRRFQNAHETLIWAS--PSPKA--KGYTFNYD-------- 169
           +  W   + +P+       +  R ++A   + W S  P+PKA  K    +Y         
Sbjct: 183 EHYWWNPSKLPSPAEWVTVKRVRVKDAVNCIWWLSKTPNPKANNKKILTSYSESMLSVLS 242

Query: 170 -----------ALKAANEDVQMRSDWLIP----------ICSGSERLRNKDGEKLHPTQK 208
                        K +     +     IP           C        K G K+HP + 
Sbjct: 243 NGFYNKGTRPSGHKLSKSHFSINHGGSIPPNLIVASNAASCGPYFDYCKKYGLKIHPARF 302

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           P A+    +   T   D+ILDPF GS  +G VA+K  R +I IE   D+ +      A+ 
Sbjct: 303 PYAIPDYFIRFLTNENDLILDPFAGSSVTGFVAEKNNRKWIAIEKDIDFANGGKGHFANK 362

Query: 269 QP 270
            P
Sbjct: 363 SP 364


>gi|317505265|ref|ZP_07963195.1| DNA (cytosine-5-)-methyltransferase domain protein [Prevotella
           salivae DSM 15606]
 gi|315663609|gb|EFV03346.1| DNA (cytosine-5-)-methyltransferase domain protein [Prevotella
           salivae DSM 15606]
          Length = 668

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 39/62 (62%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           + TQKPEALL RI+ +S+  G ++ D F GSG +  VA KL R+FI  ++  + I+    
Sbjct: 334 YATQKPEALLERIIKASSNEGMLVADFFGGSGVTATVASKLGRNFIHCDIGINSIETTRD 393

Query: 264 RI 265
           R+
Sbjct: 394 RL 395


>gi|171060953|ref|YP_001793302.1| DNA methylase N-4/N-6 domain-containing protein [Leptothrix
           cholodnii SP-6]
 gi|170778398|gb|ACB36537.1| DNA methylase N-4/N-6 domain protein [Leptothrix cholodnii SP-6]
          Length = 447

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 14/115 (12%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +PT+K   ++  I+ +S+ PGD+++DPF GSG++   A  L R +IGI+     +  A K
Sbjct: 323 YPTEKNFEMMKMIVAASSNPGDLVIDPFSGSGSTVHAADVLGREWIGIDQSLLAVKTAIK 382

Query: 264 RIA-SVQPLGNI-----------ELTVLTGKRTEPRVAFNLLVERGL--IQPGQI 304
           R+     P+G+            E    T +       F+LLV+  +  + P ++
Sbjct: 383 RLTLGRNPMGDFVKGETPPDLFSEFKASTVQHETVSAEFSLLVDHEISKLHPAEV 437



 Score = 40.8 bits (94), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 75/177 (42%), Gaps = 28/177 (15%)

Query: 37  AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
            K   LI+ DPPY   L+ Q    +H+  DA++D+         Y  F R  L+    +L
Sbjct: 91  GKKATLIYLDPPYATGLDFQSRDQEHAYNDALSDA--------GYIEFIRRRLILMLELL 142

Query: 97  KPNGTLWVIGSYHNIFRIGTMLQNL----NFWILNDIVWRKSNPMPNFRGRRFQNAHETL 152
              G+++V   +  +  +  +L  +    NF    +I+ R+     NF   ++ N ++ +
Sbjct: 143 SDQGSIYVHIGHQMLGEMKLILDEVFGAKNF---RNIITRRKCSSKNFTKHQYANLNDYI 199

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
           ++ S   K+  YT+N       N D     DW   I     ++ +K   KL P   P
Sbjct: 200 LFYS---KSDSYTWNQ---PMENPD----PDW---IAKEYPKVDSKGQYKLVPVHAP 243


>gi|300689932|ref|YP_003750927.1| site-specific DNA-methyltransferase [Ralstonia solanacearum PSI07]
 gi|299076992|emb|CBJ49605.1| putative Site-specific DNA-methyltransferase [Ralstonia
           solanacearum PSI07]
          Length = 467

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           R + K G  + HP   P AL   ++ + +  GDI+ +PF GSGT+   A++  R    +E
Sbjct: 362 RHKGKIGRDIDHPAVFPVALPKFVIEAYSDAGDIVFEPFGGSGTTMLAAQRTGRQCRSVE 421

Query: 253 MKQDYIDIATKRIASVQPLGNIEL 276
           +  +Y+D+A KR     P   + L
Sbjct: 422 IAPEYVDVAIKRFQQSYPEAPVTL 445


>gi|168763633|ref|ZP_02788640.1| DNA methylase [Escherichia coli O157:H7 str. EC4501]
 gi|217329285|ref|ZP_03445365.1| DNA methylase [Escherichia coli O157:H7 str. TW14588]
 gi|189366278|gb|EDU84694.1| DNA methylase [Escherichia coli O157:H7 str. EC4501]
 gi|217317724|gb|EEC26152.1| DNA methylase [Escherichia coli O157:H7 str. TW14588]
          Length = 352

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 39/65 (60%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R   G+E++ +  +   +
Sbjct: 283 HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALGRRATGVELETERFEQTVR 342

Query: 264 RIASV 268
            +  +
Sbjct: 343 EVQDL 347



 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 70/166 (42%), Gaps = 36/166 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  +  LP  SVDLI  DPPY                    + WD  + ++  
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPY---------------FKVKPEGWD--NQWKGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           D + + WL  C     RVLKP G+L++   +     I  M++   F +LN I+W K  P 
Sbjct: 54  DDYLK-WLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAK--PS 109

Query: 138 PNFRG------RRFQNAHETLIWASP-----SPKAKGYTFNYDALK 172
             + G      R +  A E +++A        PK  GY     ALK
Sbjct: 110 GRWNGCNKESLRAYFPATERILFAEHYQGPYRPKDAGYEAKGRALK 155


>gi|289580416|ref|YP_003478882.1| DNA methylase N-4/N-6 domain protein [Natrialba magadii ATCC 43099]
 gi|289529969|gb|ADD04320.1| DNA methylase N-4/N-6 domain protein [Natrialba magadii ATCC 43099]
          Length = 330

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/270 (21%), Positives = 104/270 (38%), Gaps = 58/270 (21%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT----RA 87
           L  +P +S++L+   PPY           D    +  T   ++    E Y+AF     R 
Sbjct: 64  LSMVPEESIELVVTSPPYF----------DIKDYENGTGGENQLGDIEGYEAFNDEIDRV 113

Query: 88  WLLACRRVLKPNGTLWVI--------GSY--HNIFRIGTMLQ----NLNFWILNDIVWRK 133
           W   C   L P G + ++          Y  H +  +   +Q    ++ F  L  I+W K
Sbjct: 114 WE-QCYEKLVPGGRMCIVVGDVLRSRSDYGRHRVLPLHATIQERCTDIGFDNLAPIIWYK 172

Query: 134 -------SNPMPNFRGRRFQ-------NAHETLIWASP----SPKAKGYTFNYDALKAAN 175
                  +     F G+ ++       +    L++  P    SP       +   ++A  
Sbjct: 173 IGNSSLEAGGNARFLGKPYEPGAVIKNDIEYILLFRKPGDYRSPTVAERVLSL--IEADR 230

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
                R  W     +G       + +  HP   P  L  R++   +   D +LDPF GSG
Sbjct: 231 HQTMFRQLWTD--ITG-------EAQTDHPAPYPATLAERLIRMFSFVTDTVLDPFAGSG 281

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           ++   A +  R  I +E++++Y +IA +R+
Sbjct: 282 STAVGATRCGRDSISVELEEEYFEIAKRRV 311


>gi|190573864|ref|YP_001971709.1| putative DNA methylase [Stenotrophomonas maltophilia K279a]
 gi|190011786|emb|CAQ45406.1| putative DNA methylase [Stenotrophomonas maltophilia K279a]
          Length = 483

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           R + K G+ + HP   P AL   ++ + T  GDI+ +PF GSGT+   A++  R    +E
Sbjct: 378 RHKGKIGQDIDHPAVFPVALPEFVIEAYTDAGDIVFEPFGGSGTTMLAAERTGRICRSVE 437

Query: 253 MKQDYIDIATKRIASVQP 270
           +   Y+D+A KR     P
Sbjct: 438 IAPQYVDVAIKRFQQNHP 455


>gi|325168258|ref|YP_004277299.1| DNA methyltransferase [Acidiphilium multivorum AIU301]
 gi|325052937|dbj|BAJ83270.1| putative DNA methyltransferase [Acidiphilium multivorum AIU301]
          Length = 324

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 6/84 (7%)

Query: 187 PICS--GSERLRNKDGE-KLHPTQKPEALLSRILVSSTKP--GDIILDPFFGSGTSGAVA 241
           P C    SER   ++ E   HP+ KP++LL R LV +  P    +++DPF GSG++ A A
Sbjct: 217 PFCDVIDSERTPKREKEIAPHPSLKPQSLL-RQLVRAVLPLGKGVVVDPFMGSGSTVAAA 275

Query: 242 KKLRRSFIGIEMKQDYIDIATKRI 265
           + +    +G+E   DY ++ATK +
Sbjct: 276 EAVGYKCVGVERYDDYFEMATKAV 299


>gi|290474297|ref|YP_003467174.1| hypothetical protein XBJ1_1254 [Xenorhabdus bovienii SS-2004]
 gi|289173607|emb|CBJ80387.1| conserved hypothetical protein [Xenorhabdus bovienii SS-2004]
          Length = 345

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 36/53 (67%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           HP +KP  L++ I+ SS++ GD++ D F GSG +   A KL R  +G+E++++
Sbjct: 278 HPCEKPADLMTHIIQSSSREGDLVADFFMGSGATLKTALKLNRRVLGVELEEE 330



 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 73/165 (44%), Gaps = 32/165 (19%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAY 81
           ++  +S+  ++ LP   +DLI  DPPY        +R     V A   SWD ++    AY
Sbjct: 8   LVNDDSLKFIKTLPDNCIDLIATDPPY--------FR-----VKAC--SWDNQWEDVTAY 52

Query: 82  DAFTRAWLLACRRVLKPNGTLWVI-GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
            A+    L    RVLKPNG+L++  GS   +     +L    F +LN I+W K  P   +
Sbjct: 53  LAWLDELLAEFWRVLKPNGSLYMFCGS--RLAADTELLVRERFNVLNQIIWAK--PSGPW 108

Query: 141 RG------RRFQNAHETLIWASP-----SPKAKGYTFNYDALKAA 174
           R       R +  A E +I+A        PK  GY      LK +
Sbjct: 109 RRQNKESLRMYFPATERIIFAEHYQGPYHPKGDGYYKQCQDLKQS 153


>gi|255690831|ref|ZP_05414506.1| DNA (cytosine-5-)-methyltransferase [Bacteroides finegoldii DSM
           17565]
 gi|260623637|gb|EEX46508.1| DNA (cytosine-5-)-methyltransferase [Bacteroides finegoldii DSM
           17565]
          Length = 252

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 104/268 (38%), Gaps = 59/268 (22%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           + K + + V+  LP  S+DL+  DPP+ + ++                 WDK        
Sbjct: 12  LYKADCLEVMPFLPESSIDLVLCDPPFGITVS----------------QWDKII------ 49

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGS--YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
            F   W    RRV K N    + GS  + ++ R G + +    W     VW KS    NF
Sbjct: 50  PFPEMWK-EIRRVRKKNAPTVLFGSEPFSSLLRCGNLDEFKYDW-----VWEKSK-ASNF 102

Query: 141 RGRRFQ--NAHETLIWASPSPKAKGYTFNYDALKAAN---EDVQMRSDW--LIPICSGSE 193
              + Q   AHE +     S   +G    Y  ++         +  S+W  +  + + + 
Sbjct: 103 LLAKKQPLKAHELI-----SVFGRGEIPYYPIMEEGEPYGNRTKRGSNWTGVNNVPNPTF 157

Query: 194 RLRNK----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           R  NK                +G+ +H  QKP ALL  ++ + TK GD +LD   GS ++
Sbjct: 158 RHENKGRRYPRSVKYFKTAESEGKTIHVNQKPIALLQYLIKTYTKEGDTVLDFASGSMST 217

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRI 265
                   R  I IE  + Y     +R+
Sbjct: 218 AIACIYTNRKCICIEKDETYFSQGEERV 245


>gi|295086226|emb|CBK67749.1| DNA modification methylase [Bacteroides xylanisolvens XB1A]
          Length = 282

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 108/256 (42%), Gaps = 26/256 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNL-QLNGQLYRPDHSLVDAVTDSWDKFSSFE-A 80
           II  N+   + +L   S+D+I   PPY + ++   ++   +  +          ++FE  
Sbjct: 4   IIYFNTAQKMSQLSDNSIDMIVTSPPYPMIEMWDDIFAAQNPDIRTAFKQNKPRTAFELM 63

Query: 81  YDAFTRAWLLACRRVLKPNGTLWV-IGS-----------YHNIFRIGTMLQNLNFWILND 128
           +    + W   C RVLK    + + IG            Y+N  RI    + L F  L +
Sbjct: 64  HKELDKVWS-ECWRVLKDGSFMCINIGDATRTINSEFALYNNNTRIILACEKLGFINLPN 122

Query: 129 IVWRKSNPMPN-FRGRRFQNA-------HE-TLIWASPSPKAKGYTFNYDALKAANEDVQ 179
           I+W+K+   PN F G             HE  LI+     +    T + DA ++++   +
Sbjct: 123 ILWKKTTNAPNKFMGSGMLPCGAYVTLEHEWILIFRKGGKRVYKTTEDKDARRSSSFFWE 182

Query: 180 MRSDWLIPI--CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
            R+ W   I    G ++  +K   +      P  L  R++   ++ GD +LDPF G GT+
Sbjct: 183 ERNIWFSDIWDIKGVKQTIDKAPSRERNASYPIELPYRLINMYSQKGDTVLDPFMGLGTT 242

Query: 238 GAVAKKLRRSFIGIEM 253
              +    R+ IG E+
Sbjct: 243 VIASILSERNSIGYEI 258


>gi|326346320|gb|EGD70057.1| putative DNA methylase [Escherichia coli O157:H7 str. 1125]
          Length = 92

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 38/62 (61%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R   G+E++ +  +   +
Sbjct: 23  HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALGRRATGVELETERFEQTVR 82

Query: 264 RI 265
            +
Sbjct: 83  EV 84


>gi|237742131|ref|ZP_04572612.1| chromosome partitioning protein parB [Fusobacterium sp. 4_1_13]
 gi|229429779|gb|EEO39991.1| chromosome partitioning protein parB [Fusobacterium sp. 4_1_13]
          Length = 438

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/244 (21%), Positives = 98/244 (40%), Gaps = 32/244 (13%)

Query: 40  VDLIFADPPYNLQL---NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
           +DL+  DPPYN+     NGQ  + D+              + E +  F  A+      V+
Sbjct: 183 IDLLVTDPPYNVDYQAANGQKIKNDNM-------------NSENFYRFLLAFYKNAYEVM 229

Query: 97  KPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
           +     ++  +          L    F I   ++W K+  + + +   +++      W  
Sbjct: 230 RAGAGFYIFHADSETRAFRGALTEAGFKISQCLIWVKNQFILSRQDYNWKHEPCLYGWKE 289

Query: 157 PSPKAKGYTFNYDAL------------KAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
                    F  D +            K   E ++   +    I   ++ L+N     +H
Sbjct: 290 GVKHFFIRNFTQDTIQEIYSKTESMSKKELQETLKNILEEYTTIIRENKPLKND----IH 345

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PT KP  L+S+++ +S+K    +LD F GSG++   A++L+R    +E  + Y D+  KR
Sbjct: 346 PTMKPIRLISKLIHNSSKENWNVLDLFGGSGSTLIAAEQLKRKAFLMEFDEKYADVIVKR 405

Query: 265 IASV 268
            A +
Sbjct: 406 YAEM 409


>gi|226944536|ref|YP_002799609.1| adinene-specific DNA-methyltransferase [Azotobacter vinelandii DJ]
 gi|226719463|gb|ACO78634.1| adinene-specific DNA-methyltransferase [Azotobacter vinelandii DJ]
          Length = 677

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 127/310 (40%), Gaps = 70/310 (22%)

Query: 19  WKDKIIKGNSISVLEK---------LPA--KSVDLIFADPPYNLQLNGQLYRPDHSLVD- 66
           W++++I G+++  +           +PA    +DLI+ DPP++ + +   YR   SL   
Sbjct: 88  WRNRLIYGDNLLAMAALLAGDPPSGMPALRGGIDLIYIDPPFDSRAD---YRTRVSLPGV 144

Query: 67  ------------AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV-IG---SYHN 110
                       A  D+W   ++  +Y       L+  R +L  +G++ + IG   S++ 
Sbjct: 145 ELEQRPTVLEQFAYCDTWSDGTA--SYLEMLVPRLILMRELLSKSGSICIHIGMQVSHYV 202

Query: 111 IFRIGTMLQNLNFWILNDIVWRKSNPMPN-FRGRRFQNAHETLIWASPS----------- 158
                 +    NF    +IVW    P      G +   AHE L+W + +           
Sbjct: 203 KAVADEIFGKANF--NTEIVWSYGTPSGGRAAGNKMVKAHEYLLWYAKNYGEHFHRKEYL 260

Query: 159 -----------PKAKGYTFNY---DALKAANEDVQMRSDWLIPICS---------GSERL 195
                       +  G+   Y   +  K   E   +     +P+ +             +
Sbjct: 261 PYSEKYIEDRFTEVDGHGRRYRTREREKGCFERQYLDESKGVPLSTVWTDVKQLYAHHYI 320

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           + K+ E  + TQKPEALL R++ S+     ++ D F GSGT+ AVA++L R +I  ++ +
Sbjct: 321 KRKNEETGYDTQKPEALLERVINSACPENGLVADFFGGSGTTAAVAERLGRRWITSDLGK 380

Query: 256 DYIDIATKRI 265
               I  KR+
Sbjct: 381 PACMIMRKRL 390


>gi|163849167|ref|YP_001637211.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222527144|ref|YP_002571615.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus sp.
           Y-400-fl]
 gi|163670456|gb|ABY36822.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222451023|gb|ACM55289.1| DNA methylase N-4/N-6 domain protein [Chloroflexus sp. Y-400-fl]
          Length = 314

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 116/288 (40%), Gaps = 42/288 (14%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNL------QL------NGQLYRPDHSLVDA 67
           K  +I  +    L ++P  S+  I  DPPY +      QL      NG ++R   S    
Sbjct: 21  KSVVIHADCFEWLSEVPGDSIHAIVTDPPYGVKEYDPEQLEKRSNGNGGIWRIPPSFDGH 80

Query: 68  VTDSWDKFSSF-----EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                 +F++      E    +   W     RVL+P G +++  +      + T +    
Sbjct: 81  TRSPLPRFTALNPKERERIQHYFYEWARLALRVLRPGGHVFLASNVFLSQIVFTAIVQAG 140

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
           F     +V R    +    G R +NA E        P+  G    +   +    D    S
Sbjct: 141 FEFRGQVV-RLVRTLRG--GDRPKNAEEEFPDVCSMPR--GCYEPWGIFRKPIPDGMTVS 195

Query: 183 DWLIPICSGSERLRNKDGEKL------------------HPTQKPEALLSRILVSSTKPG 224
           + L    +G  R R +DG                     HP+ KP++ L +I+ +S   G
Sbjct: 196 ECLRLFQTGGLR-RKQDGNPFEDVIESERTPQKERAIANHPSLKPQSFLRQIVYASLPLG 254

Query: 225 D-IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           + ++LDPF GSG++ A A+ +  + IGIE  ++Y  ++ + I ++  L
Sbjct: 255 EGVVLDPFMGSGSTIAAAEAIGYAAIGIEKYREYYLMSLQSIPALSSL 302


>gi|302873673|ref|YP_003842306.1| DNA methylase N-4/N-6 domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307686603|ref|ZP_07629049.1| DNA methylase N-4/N-6 domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302576530|gb|ADL50542.1| DNA methylase N-4/N-6 domain protein [Clostridium cellulovorans
           743B]
          Length = 417

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 122/292 (41%), Gaps = 58/292 (19%)

Query: 20  KDKIIKGNS--ISVLEKL-PAKSVDLIFADPPYNLQL-----NGQLYRPDHSLVDAVTDS 71
           K ++I G+S  +S +EKL   K  +L   DPPYN+       N ++ + DH     + DS
Sbjct: 168 KHRLICGDSTKLSDVEKLMNGKKANLCVTDPPYNVNYSAGKENERVIKNDH-----MGDS 222

Query: 72  WDKFSSFEAYDAFTRAWLLACRR----VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
             KF  F          LLA  +    VL      ++  +           ++  F + N
Sbjct: 223 --KFYDF----------LLAAYKNAIVVLDDGAGAYIFHADTEGLNFRKAFKDAGFHLAN 270

Query: 128 DIVWRKSNPMPNFRGRR-FQNAHETLIWA-SPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
             +W K + +    GR  +Q  HE +++   P+ K + Y+           D +  + W 
Sbjct: 271 VCIWVKQSLV---LGRSDYQWQHEPVLYGWKPTGKHRWYS-----------DRKQTTVWN 316

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
               + S           HPT KP  L++  + +S+    II +PF GSG++    ++  
Sbjct: 317 FDRPTKSPD---------HPTMKPVPLMAYPIQNSSMTNCIIYEPFAGSGSTLIACEQTG 367

Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERG 297
           RS   +E+ + Y D+  +R   ++  GN     L   R   ++ ++ + E G
Sbjct: 368 RSCYAVELDEKYCDVIVRRY--IETAGNDSEVFLL--RDGEKIKYSDVKEEG 415


>gi|260587176|ref|ZP_05853089.1| putative prophage LambdaMc01, DNA methyltransferase [Blautia
           hansenii DSM 20583]
 gi|260542371|gb|EEX22940.1| putative prophage LambdaMc01, DNA methyltransferase [Blautia
           hansenii DSM 20583]
          Length = 445

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 107/257 (41%), Gaps = 47/257 (18%)

Query: 22  KIIKGNSISVLEK---LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD----K 74
           +++ G+S +  ++   L      ++  DPPY    +G       S     T  +D    +
Sbjct: 191 RLVCGDSTNEADRALLLDGAEPQILLMDPPY---CSGGFQESGRSTGSIGTKRYDANGKE 247

Query: 75  FSSFEAYDAF-TRAWLLACRRVLKP-NGTL-WVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
                A D+  TR +    R +LK   GT+ +    +     +  +++   F + N IVW
Sbjct: 248 IKVTIANDSLSTRGYQQLMRSILKQFTGTVVYCFTDWRMWLYLYDVMEESGFGVKNMIVW 307

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKA----KGYTFNYDALKAANEDVQMRSDWLIP 187
            K  P     G  ++  HE +++A  +  A    KGY    +A ++ NE           
Sbjct: 308 NKKTP---GMGMGWRTQHELIMFAHRTKPAWDNHKGYGNVIEATRSGNE----------- 353

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                          LHPTQKP  +L ++L  +T+  + ++D F GSGT+   A+ + + 
Sbjct: 354 ---------------LHPTQKPVEILEKLL-DNTQWAEGVMDAFGGSGTTLIAAESIGQK 397

Query: 248 FIGIEMKQDYIDIATKR 264
              +E+   ++D   KR
Sbjct: 398 SYLMELSPQFVDTIVKR 414


>gi|218703091|ref|YP_002410720.1| putative DNA adenine methyltransferase ( DNA methylase) from phage
           origin [Escherichia coli IAI39]
 gi|218373077|emb|CAR20969.1| putative DNA adenine methyltransferase ( DNA methylase) from phage
           origin [Escherichia coli IAI39]
          Length = 351

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 39/62 (62%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  +G+E++ +  +   K
Sbjct: 284 HPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALGRLALGVELESERFNQTVK 343

Query: 264 RI 265
            I
Sbjct: 344 EI 345



 Score = 43.9 bits (102), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 19/113 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           +I  + +  ++ LP  S+DLI  DPPY  ++ NG                WD ++   E 
Sbjct: 13  LINADCLHFIQSLPDDSIDLIVTDPPYFKVKPNG----------------WDNQWKGDED 56

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K
Sbjct: 57  YLKWLDHCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAK 108


>gi|315654952|ref|ZP_07907857.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii ATCC
           51333]
 gi|315490913|gb|EFU80533.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii ATCC
           51333]
          Length = 418

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 94/235 (40%), Gaps = 33/235 (14%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           +  K  +L+  DPPYN+          +S +    D  D  + ++    F  A       
Sbjct: 184 MDGKQANLVVTDPPYNVDFKS------NSGLKIAGDKQDTDTFYQ----FLLAAFTNMAA 233

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNAHETLI 153
            L   G+ +V  +           Q+  F++    +W K + +    GR  +Q  HE ++
Sbjct: 234 SLAKGGSAYVFHADTEGLNFRRAFQDAGFYLSGCCIWVKDSLV---LGRSPYQWQHEPVL 290

Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL 213
                     Y +  D   A   D +  + W       ++  +N D    HPT KP  LL
Sbjct: 291 ----------YGWKKDGSHAWYADRKQTTVWNF-----AKPRKNSD----HPTSKPLDLL 331

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +  + +ST+   I+LD F GSG++   A+   R+   +E+ + Y  +  +R A  
Sbjct: 332 AYPIRNSTQTNAIVLDTFAGSGSTLMAAEATDRTCYCMELDEKYASVIVRRYAEA 386


>gi|237750020|ref|ZP_04580500.1| type II DNA modification enzyme [Helicobacter bilis ATCC 43879]
 gi|229374431|gb|EEO24822.1| type II DNA modification enzyme [Helicobacter bilis ATCC 43879]
          Length = 893

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 190 SGSERLRNK-DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
           +G + L++  D  K+    KPE L+ +I    +    IILD F GSGTS A A+KL R +
Sbjct: 658 AGDKALKDTFDNLKVFENPKPEGLIQQIAEIGSNENSIILDFFAGSGTSVATAQKLGRKW 717

Query: 249 IGIEMKQDYIDIATKRIASV 268
           +GIEM + +  +   R+  V
Sbjct: 718 LGIEMGEHFYKVILPRLKKV 737


>gi|284054872|ref|ZP_06385082.1| adenine DNA methyltransferase [Arthrospira platensis str. Paraca]
          Length = 374

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 13/122 (10%)

Query: 159 PKAKGYTFNYDALK--AANEDVQMRSDWLIP----------ICSGSERLRNKDGEKLHPT 206
           P+ K Y F+ D L    A E  +MRS +  P              +ER++  +G+ +H  
Sbjct: 247 PEGKPY-FSVDGLHPLTAQEWGKMRSQFRCPHGFTNVWQRSALRNNERIKTPNGKAVHLN 305

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           QKP  L+  I+ +S++  D+I +PF G  ++   A  L R     E+ + Y     KR +
Sbjct: 306 QKPLDLMQLIIQASSQEQDVIWEPFGGLFSASLAANILNRKAFACEIDETYFYYGVKRFS 365

Query: 267 SV 268
            V
Sbjct: 366 QV 367


>gi|29566890|ref|NP_818455.1| gp155 [Mycobacterium phage Omega]
 gi|29425615|gb|AAN12797.1| gp155 [Mycobacterium phage Omega]
          Length = 436

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 45/114 (39%), Gaps = 19/114 (16%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G+   VL   P  SVD I  DPPY L   G+ +  D S +    + W++           
Sbjct: 9   GDCRGVLASFPDASVDAILTDPPYELGFMGKKW--DGSGIAFDVEMWEQ----------- 55

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                 C RVLKP G L   G      R+   +++  F I + I W   +  P 
Sbjct: 56  ------CLRVLKPGGHLLAFGGSRTWHRLTVAIEDAGFEIRDSIAWLYGSGFPK 103



 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 41/75 (54%), Gaps = 5/75 (6%)

Query: 197 NKDGEK-LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF--IGIEM 253
           N+DG K +H T KP  L+  +      PG +ILDPF GSGT+  V   L   F  I IE 
Sbjct: 362 NEDGAKVMHSTVKPLTLMRWLARLVCPPGGVILDPFAGSGTT--VEACLLEGFDCIAIES 419

Query: 254 KQDYIDIATKRIASV 268
           + DYI +  +RI  V
Sbjct: 420 EADYIPLIEQRIERV 434


>gi|154244393|ref|YP_001415351.1| DNA methylase N-4/N-6 domain-containing protein [Xanthobacter
           autotrophicus Py2]
 gi|154158478|gb|ABS65694.1| DNA methylase N-4/N-6 domain protein [Xanthobacter autotrophicus
           Py2]
          Length = 696

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 40/62 (64%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           + T+KPE L+ R++VSST    I+ D F GSGT+ AVA++L R +I  ++ +    I  K
Sbjct: 356 YDTRKPERLIERLIVSSTNADSIVADFFVGSGTTAAVAERLGRRWIASDLGKPACMITRK 415

Query: 264 RI 265
           R+
Sbjct: 416 RL 417


>gi|299769744|ref|YP_003731770.1| phage DNA methylase [Acinetobacter sp. DR1]
 gi|298699832|gb|ADI90397.1| phage DNA methylase [Acinetobacter sp. DR1]
          Length = 253

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 40/78 (51%)

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           S ++ ++D   +H TQKP  L   ++ S T PG+++LD   GSGT+G       R+FIGI
Sbjct: 162 SVQIFSRDFPVVHDTQKPVDLCEFLIRSYTNPGELVLDNTMGSGTTGVACVNTGRNFIGI 221

Query: 252 EMKQDYIDIATKRIASVQ 269
           E        A  RI    
Sbjct: 222 EKDIKTFQTAEDRIKEAH 239


>gi|268324637|emb|CBH38225.1| putative N6 adenine-specific DNA methyltransferase [uncultured
           archaeon]
          Length = 689

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 37/57 (64%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           +N+ G      +KPE LL+R++   T+  +I+ D + GSGT+ AVA K+ R +IGIE
Sbjct: 485 QNEGGVSFPSGKKPELLLARLISMFTQQDEIVCDFYLGSGTTAAVAHKMGRQYIGIE 541


>gi|221369906|ref|YP_002521002.1| DNA modification methylase [Rhodobacter sphaeroides KD131]
 gi|221162958|gb|ACM03929.1| DNA modification methylase [Rhodobacter sphaeroides KD131]
          Length = 458

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP   P AL+  +L + T PGD++ +PF GSGT    A++  R    +E+   Y D+A +
Sbjct: 369 HPAVFPVALVEAVLKAFTDPGDLVFEPFCGSGTQLIAAERTGRRCSAVELDPVYCDVAVR 428

Query: 264 R 264
           R
Sbjct: 429 R 429


>gi|328954069|ref|YP_004371403.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
           11109]
 gi|328454393|gb|AEB10222.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
           11109]
          Length = 423

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 123/296 (41%), Gaps = 54/296 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +II G+   + E L   +V L+   PPY  QL    Y P   +       +D   S+E Y
Sbjct: 5   RIIVGDCRRMPE-LADATVHLVVTSPPY-WQLKD--YGPKQQI------GYD--DSYEDY 52

Query: 82  DAFTRAWLLACRRVLKPNGTLWV-IG------SYHNIFRIGTM-------LQNLNFWILN 127
                     C RVL P   L V IG      +Y+  ++I  +        + + F  + 
Sbjct: 53  INHLNLVWQECWRVLHPGCRLCVNIGDQFARAAYYGRYKIMPIRTEIIKFCETMGFDYMG 112

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD---------ALKAANEDV 178
            I+W+K        G        T++ + P P+      +Y+         A   A+ +V
Sbjct: 113 AIIWQKVTTCNTSGG-------ATIMGSFPFPRNGMLKLDYEFILIFKKPGATPPASAEV 165

Query: 179 QMRS-----DWLIPICSGSERLRNKDGEKL--HPTQKPEALLSRILVSSTKPGDIILDPF 231
           + RS     +W     +  +   N  GEK   H    PE L  R++   T  G+ +LDPF
Sbjct: 166 KERSRMSQEEWK----TYFQGHWNFPGEKQSKHLAMFPEELPRRLIKMFTFVGETVLDPF 221

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ-PLGNIELTVLTGKRTEP 286
            GSGT+   A+ L R+ +G E+ ++++ I  +++      L   +  VLT ++  P
Sbjct: 222 LGSGTTSLTARNLGRNSVGYEINEEFLPIIQEKLGLQHGALFGSDEVVLTQRKKAP 277


>gi|291570624|dbj|BAI92896.1| putative DNA methyltransferase [Arthrospira platensis NIES-39]
          Length = 362

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 13/122 (10%)

Query: 159 PKAKGYTFNYDALK--AANEDVQMRSDWLIP----------ICSGSERLRNKDGEKLHPT 206
           P+ K Y F+ D L    A E  +MRS +  P              +ER++  +G+ +H  
Sbjct: 235 PEGKPY-FSVDGLHPLTAQEWGKMRSQFRCPHGFTNVWQRSALRNNERIKTPNGKAVHLN 293

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           QKP  L+  I+ +S++  D+I +PF G  ++   A  L R     E+ + Y     KR +
Sbjct: 294 QKPLDLMQLIIQASSQEQDVIWEPFGGLFSASLAANILNRKAFACEIDETYFYYGVKRFS 353

Query: 267 SV 268
            V
Sbjct: 354 QV 355


>gi|70607700|ref|YP_256570.1| modification methylase [Sulfolobus acidocaldarius DSM 639]
 gi|68568348|gb|AAY81277.1| modification methylase [Sulfolobus acidocaldarius DSM 639]
          Length = 286

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 116/287 (40%), Gaps = 57/287 (19%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+I G+S ++ E +  KS+ L+   PPY                +A  D  D F S+E Y
Sbjct: 3   KVIFGDSRNMSE-VEDKSIGLVLTSPPY---------------YNAPFDFPDLFPSYEEY 46

Query: 82  DAFTRAWLLACRRVL-------------KPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
               R       RVL             +  G L+ I +  ++ RI T   +L F     
Sbjct: 47  LNLLRDVGKELYRVLDDGRVAVFVTSDVRIEGVLYPIVA--DLIRIMT---DLGFKYQER 101

Query: 129 IVWRK---------------SNPMPNFRGRRFQNAHETLI-WASPSPKAKGYTFNYDALK 172
           I+W+K                +P P +      N +E ++ +  P    K +T N +  K
Sbjct: 102 IIWKKPEGYIRISRRSGVLIQHPYPLYYYP--DNVYEDIVVFKKP---GKFHTTNQEKSK 156

Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
                 Q +  W + +   +  L N    K      PE L +RI+   +  GD +LDPF 
Sbjct: 157 IDVNKFQ-KEKWYLNVWEITNVLPNNKYSKFT-APFPEELANRIVTLYSYVGDTVLDPFA 214

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
           G+GT+  VA+ L R+ +G E+  +  ++  +R+       N E+  +
Sbjct: 215 GTGTTLYVARILSRNAVGYEIDLELKEVIRERVGHPTLFDNHEVVFV 261


>gi|315616051|gb|EFU96675.1| DNA methylase family protein [Escherichia coli 3431]
          Length = 349

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 35/51 (68%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  IG+E++
Sbjct: 283 HPCEKPAEMLQQIIRASSRPGDLVADFFMGSGSTVKAALALGRRAIGVELE 333



 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 69/166 (41%), Gaps = 36/166 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  +  LP   VDLI  DPPY                    + WD  + ++  
Sbjct: 11  ELINADCLEFIRSLPENFVDLIVTDPPY---------------FKVKPEGWD--NQWKGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           D + + WL  C     RVLKP G+L++   +     I  M++   F +LN I+W K  P 
Sbjct: 54  DDYLK-WLDQCLAQFWRVLKPAGSLYLFCGHRRASDIEIMMRE-RFSVLNHIIWAK--PS 109

Query: 138 PNFRG------RRFQNAHETLIWASP-----SPKAKGYTFNYDALK 172
             + G      R +  A E +++A        PK  GY     ALK
Sbjct: 110 GRWNGCNKESLRAYFPATERILFAEHYQGPYRPKDAGYAAKGSALK 155


>gi|154500925|ref|ZP_02038963.1| hypothetical protein BACCAP_04610 [Bacteroides capillosus ATCC
           29799]
 gi|150270255|gb|EDM97590.1| hypothetical protein BACCAP_04610 [Bacteroides capillosus ATCC
           29799]
          Length = 264

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 35/63 (55%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +HPTQKP AL    + + T+PG++++D   GS T+   A    R FI  E    Y   AT
Sbjct: 188 VHPTQKPVALCEYFIKTYTRPGEVVVDICAGSATTAVAALNTGRRFICFETVPAYYAAAT 247

Query: 263 KRI 265
           +RI
Sbjct: 248 ERI 250


>gi|256026845|ref|ZP_05440679.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
           D11]
 gi|289764838|ref|ZP_06524216.1| chromosome partitioning protein parB [Fusobacterium sp. D11]
 gi|289716393|gb|EFD80405.1| chromosome partitioning protein parB [Fusobacterium sp. D11]
          Length = 438

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 110/262 (41%), Gaps = 39/262 (14%)

Query: 40  VDLIFADPPYNLQL---NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
           +DL+  DPPYN+     NGQ  + D+              + E +  F  A+      V+
Sbjct: 183 IDLLVTDPPYNVDYQAANGQKIKNDNM-------------NSENFYRFLLAFYKNAYEVM 229

Query: 97  KPNGTLWVI--GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
           +     ++    S    FR G +++   F I   ++W K+  + + +   +++      W
Sbjct: 230 RAGAGFYIFHADSETKAFR-GALIE-AGFKISQCLIWVKNQFILSRQDYNWKHEPCLYGW 287

Query: 155 ASPSPKAKGYTFNYDAL------------KAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
                      F  D +            K   E ++   +    I   ++ L+N     
Sbjct: 288 KEGVKHFFIRNFTQDTIQEIYSKTESMSKKELQETLKNILEEYTTIIRENKPLKND---- 343

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +HPT KP  L+S+++ +S+K    +LD F GSG++   A++L+R    +E  + Y D+  
Sbjct: 344 IHPTMKPIRLISKLIHNSSKENWNVLDLFGGSGSTLIAAEQLKRKAFLMEFDEKYADVIV 403

Query: 263 KRIASVQPLGNIELTVLTGKRT 284
           KR A    +G  ++ +L   +T
Sbjct: 404 KRYAE---MGKKDIKLLRNGKT 422


>gi|114565597|ref|YP_752751.1| DNA modification methylase-like protein [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|114336532|gb|ABI67380.1| DNA modification methylase-like protein [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 481

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           E LHP + PE L+   +   TKPGD + DP  G+G++   A +  R+ IG+E+  ++  I
Sbjct: 240 EVLHPAKFPETLVEEFIKLFTKPGDNVFDPMAGTGSTLIAALRNERNAIGVELSPEWASI 299

Query: 261 ATKRI-ASVQP 270
              R+   +QP
Sbjct: 300 GQNRLNYELQP 310


>gi|260868444|ref|YP_003234846.1| putative DNA methylase [Escherichia coli O111:H- str. 11128]
 gi|257764800|dbj|BAI36295.1| putative DNA methylase [Escherichia coli O111:H- str. 11128]
          Length = 352

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 38/62 (61%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R   G+E++ +  +   +
Sbjct: 283 HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAALALGRRATGVELETERFEQTVR 342

Query: 264 RI 265
            +
Sbjct: 343 EV 344



 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 68/163 (41%), Gaps = 30/163 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  +  LP  SVDLI  DPPY                    + WD +++  E 
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPY---------------FKVKPEGWDNQWTGDED 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K  P   +
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAK--PSGRW 112

Query: 141 RG------RRFQNAHETLIWASP-----SPKAKGYTFNYDALK 172
            G      R +  A E +++A        PK  GY     ALK
Sbjct: 113 NGCNKESLRAYFPATERILFAEHYQGPYRPKDAGYEAKGRALK 155


>gi|257088347|ref|ZP_05582708.1| DNA methylase [Enterococcus faecalis D6]
 gi|256996377|gb|EEU83679.1| DNA methylase [Enterococcus faecalis D6]
          Length = 416

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 103/242 (42%), Gaps = 36/242 (14%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           +  K  +L   DPPYN+   G   +  +  +     + + F +F  YDAF+        +
Sbjct: 186 MDGKLANLTVTDPPYNVNYEGSAGKIKNDNM-----ANEAFYTF-LYDAFS-----CMEK 234

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNAHETLI 153
            +  + +++V  +            +  F++    +W+K + +    GR  +Q  HE ++
Sbjct: 235 SMADDASIYVFHADTEGLNFRKAFVDAGFYLSGTCIWKKQSLV---LGRSPYQWQHEPVL 291

Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL 213
           +     K KG    Y   K +             I    +  +N D    HPT KP  LL
Sbjct: 292 YGW---KKKGKHQWYTGRKEST------------IWEFDKPKKNGD----HPTMKPIPLL 332

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           +  + +S+    I+LDPF GSG++    ++  R    IE+ + ++D+   R   ++ +G+
Sbjct: 333 AYPITNSSMSNCIVLDPFGGSGSTLIACEQTNRICHTIELDEKFVDVIVNRY--IEQVGS 390

Query: 274 IE 275
            E
Sbjct: 391 AE 392


>gi|213967436|ref|ZP_03395584.1| DNA-methyltransferase (DNA-modification methylase) protein
           [Pseudomonas syringae pv. tomato T1]
 gi|213927737|gb|EEB61284.1| DNA-methyltransferase (DNA-modification methylase) protein
           [Pseudomonas syringae pv. tomato T1]
          Length = 148

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 34/66 (51%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPT KP  L++ +L   T  G   LDPF GSG++G  A      FIGIE    Y+ IA  
Sbjct: 61  HPTVKPTDLMAYLLRLVTPTGGKTLDPFMGSGSTGKAAVLEGFDFIGIEQDAAYMAIAKA 120

Query: 264 RIASVQ 269
           RI    
Sbjct: 121 RIGHAH 126


>gi|260844249|ref|YP_003222027.1| putative DNA methylase [Escherichia coli O103:H2 str. 12009]
 gi|257759396|dbj|BAI30893.1| putative DNA methylase [Escherichia coli O103:H2 str. 12009]
          Length = 352

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 38/62 (61%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R   G+E++ +  +   +
Sbjct: 283 HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAALALGRRATGVELEAERFEQTVR 342

Query: 264 RI 265
            +
Sbjct: 343 EV 344



 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 23/116 (19%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  ++ LP  SVDLI  DPPY                    + WD  + ++  
Sbjct: 11  ELINADCLEFIQTLPKNSVDLIVTDPPY---------------FKVKPEGWD--NQWKGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           D + + WL  C     RVLKP G+L++   +     I  M++  +F +LN I+W K
Sbjct: 54  DDYLK-WLGQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-HFNVLNHIIWAK 107


>gi|29566483|ref|NP_818049.1| gp76 [Mycobacterium phage Che9d]
 gi|29425208|gb|AAN07994.1| gp76 [Mycobacterium phage Che9d]
          Length = 224

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 6/78 (7%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           +  GS  L  + G   HP +KP  +L R+L S++    ++ DPF GSG++   A+ L R 
Sbjct: 142 MMGGSTGLGGRTG---HPHEKPLDVLERLLDSTSG---VVADPFAGSGSTLVAARNLGRR 195

Query: 248 FIGIEMKQDYIDIATKRI 265
            IG+E+++ Y +I  +R+
Sbjct: 196 AIGVELEERYCEIIARRL 213


>gi|256617090|ref|ZP_05473936.1| DNA methylase [Enterococcus faecalis ATCC 4200]
 gi|256596617|gb|EEU15793.1| DNA methylase [Enterococcus faecalis ATCC 4200]
          Length = 416

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 103/242 (42%), Gaps = 36/242 (14%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           +  K  +L   DPPYN+   G   +  +  +     + + F +F  YDAF+        +
Sbjct: 186 MDGKLANLTVTDPPYNVNYEGSAGKIKNDNM-----ANEAFYTF-LYDAFS-----CMEK 234

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNAHETLI 153
            +  + +++V  +            +  F++    +W+K + +    GR  +Q  HE ++
Sbjct: 235 SMADDASIYVFHADTEGLNFRKAFVDAGFYLSGTCIWKKQSLV---LGRSPYQWQHEPVL 291

Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL 213
           +     K KG    Y   K +             I    +  +N D    HPT KP  LL
Sbjct: 292 YGW---KKKGKHQWYTGRKEST------------IWEFDKPKKNGD----HPTMKPIPLL 332

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           +  + +S+    I+LDPF GSG++    ++  R    IE+ + ++D+   R   ++ +G+
Sbjct: 333 AYPITNSSMSNCIVLDPFGGSGSTLIACEQTNRICHTIELDEKFVDVIVNRY--IEQVGS 390

Query: 274 IE 275
            E
Sbjct: 391 AE 392


>gi|283798251|ref|ZP_06347404.1| putative prophage LambdaMc01, DNA methyltransferase [Clostridium
           sp. M62/1]
 gi|291074032|gb|EFE11396.1| putative prophage LambdaMc01, DNA methyltransferase [Clostridium
           sp. M62/1]
          Length = 445

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 106/257 (41%), Gaps = 47/257 (18%)

Query: 22  KIIKGNSISVLEK---LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD----K 74
           +++ G+S +  ++   L      ++  DPPY    +G       S     T  +D    +
Sbjct: 191 RLVCGDSTNEADRALLLDGAEPQILLMDPPY---CSGGFQESGRSTGSIGTKRYDANGKE 247

Query: 75  FSSFEAYDAF-TRAWLLACRRVLKP-NGTL-WVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
                A D   TR +    R +LK   GT+ +    +     +  +++   F + N IVW
Sbjct: 248 IKVTIANDTLSTRGYQQLMRSILKQFTGTVVYCFTDWRMWLYLYDVMEESGFGVKNMIVW 307

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKA----KGYTFNYDALKAANEDVQMRSDWLIP 187
            K  P     G  ++  HE +++A  +  A    KGY    +A ++ NE           
Sbjct: 308 NKKTP---GMGMGWRTQHELIMFAHRTKPAWDNHKGYGNVIEATRSGNE----------- 353

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                          LHPTQKP  +L ++L  +T+  + ++D F GSGT+   A+ + + 
Sbjct: 354 ---------------LHPTQKPVEILEKLL-DNTQWAEGVMDAFGGSGTTLIAAESIGQK 397

Query: 248 FIGIEMKQDYIDIATKR 264
              +E+   ++D   KR
Sbjct: 398 SYLMELSPQFVDTIVKR 414


>gi|291164792|gb|ADD80822.1| DNA methylase [Rhodococcus phage ReqiDocB7]
          Length = 236

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/246 (20%), Positives = 104/246 (42%), Gaps = 33/246 (13%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQL--NGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           G+++ +   LP+ SV+ +  DPP+ +    N  +          + +  D   + E ++ 
Sbjct: 10  GDAVDLCAILPSGSVNCVITDPPFGIDAISNQSVTEKGKEYARKIANDSDPQVAIEVFNK 69

Query: 84  FTRAWLLACRRVLKPNGTLWVIGSYHNI---FRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
              + L         +  L++  S+H +     +   L    F   N ++W K+      
Sbjct: 70  VMDSLLPKT----SDDCDLYIFTSWHVLDHWIGVAHDLSRHGFTYKNMLIWEKNG----- 120

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
                 +  +T  W +          +Y+ +    +  ++R+D   P   G  R+     
Sbjct: 121 -----ASMGDTNSWGT----------SYEVILFLKKGKRIRTDKRRP---GVIRVGQLPA 162

Query: 201 EKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
             L HP +KP  LL  +L  S+  GD+++DPF GSG+    AK++ R+ I +E+ ++   
Sbjct: 163 NTLIHPHEKPVELLQILLRHSSSEGDLVVDPFGGSGSLVRAAKEIGRNAIAMELDENNWK 222

Query: 260 IATKRI 265
            A +++
Sbjct: 223 KAVRKL 228


>gi|257439329|ref|ZP_05615084.1| putative prophage LambdaMc01, DNA methyltransferase
           [Faecalibacterium prausnitzii A2-165]
 gi|257198204|gb|EEU96488.1| putative prophage LambdaMc01, DNA methyltransferase
           [Faecalibacterium prausnitzii A2-165]
          Length = 445

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 106/257 (41%), Gaps = 47/257 (18%)

Query: 22  KIIKGNSISVLEK---LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD----K 74
           +++ G+S +  ++   L      ++  DPPY    +G       S     T  +D    +
Sbjct: 191 RLVCGDSTNEADRALLLDGAEPQILLMDPPY---CSGGFQESGRSTGSIGTKRYDANGKE 247

Query: 75  FSSFEAYDAF-TRAWLLACRRVLKP-NGTL-WVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
                A D   TR +    R +LK   GT+ +    +     +  +++   F + N IVW
Sbjct: 248 IKVTIANDTLSTRGYQQLMRSILKQFTGTVVYCFTDWRMWLYLYDVMEESGFGVKNMIVW 307

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKA----KGYTFNYDALKAANEDVQMRSDWLIP 187
            K  P     G  ++  HE +++A  +  A    KGY    +A ++ NE           
Sbjct: 308 NKKTP---GMGMGWRTQHELIMFAHRTKPAWDNHKGYGNVIEATRSGNE----------- 353

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                          LHPTQKP  +L ++L  +T+  + ++D F GSGT+   A+ + + 
Sbjct: 354 ---------------LHPTQKPVEILEKLL-DNTQWAEGVMDAFGGSGTTLIAAESIGQK 397

Query: 248 FIGIEMKQDYIDIATKR 264
              +E+   ++D   KR
Sbjct: 398 SYLMELSPQFVDTIVKR 414


>gi|313667103|gb|ADR72998.1| M.BstEII [Geobacillus stearothermophilus]
          Length = 433

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 37/49 (75%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           +PT+K   +L +I+++S+  GDI+LD F GSGT+ AVA++ RR +I I+
Sbjct: 309 YPTEKNPNMLKQIILASSNEGDIVLDAFAGSGTTIAVAEEHRRKWIAID 357



 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 72/161 (44%), Gaps = 27/161 (16%)

Query: 18  EWKDKIIKGNSISVLEKL-----PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           ++ ++II G+++ +L  L         V LI+ DPPY    + +    +H+  D +    
Sbjct: 51  DYYNQIIFGDNLYILRTLLDNKDIVGKVRLIYIDPPYGTNSSFKSRSQEHAYDDNLIG-- 108

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML------QNLNFWIL 126
                 + Y  F R  L+  R +L  +G+++V    H  F +  ++      QN   WI 
Sbjct: 109 ------DKYLEFIRQRLILMRELLADDGSIYVHLDSHMAFPVKIIMDEVFGQQNFRNWIT 162

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
                +K NP  N+  +++ N  + +++ S   K K Y FN
Sbjct: 163 R----QKCNPK-NYTRKQYGNISDYILFYS---KTKNYVFN 195


>gi|146311899|ref|YP_001176973.1| DNA methylase N-4/N-6 domain-containing protein [Enterobacter sp.
           638]
 gi|145318775|gb|ABP60922.1| DNA methylase N-4/N-6 domain protein [Enterobacter sp. 638]
          Length = 348

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 36/53 (67%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  IG+E++ +
Sbjct: 281 HPCEKPADMLRQIINASSRPGDMVADFFMGSGSTVKAALDLGRRAIGVELEDE 333



 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 28/132 (21%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDH 62
           KN++ IN  +         +   + + VL  LPA SVDLI  DPPY  ++ NG       
Sbjct: 2   KNTVKINSAE---------LFNADCLQVLALLPADSVDLIITDPPYFKVKPNG------- 45

Query: 63  SLVDAVTDSWD-KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
                    WD ++     Y  +    L+   RVLKPNG++++    H +     +L   
Sbjct: 46  ---------WDNQWRGDVDYLEWLDKCLVEFWRVLKPNGSIYLFCG-HRLSADTELLMRN 95

Query: 122 NFWILNDIVWRK 133
            F ILN I+W K
Sbjct: 96  RFNILNHIIWAK 107


>gi|307151673|ref|YP_003887057.1| DNA methylase N-4/N-6 domain-containing protein [Cyanothece sp. PCC
           7822]
 gi|306981901|gb|ADN13782.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7822]
          Length = 285

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 108/259 (41%), Gaps = 31/259 (11%)

Query: 30  SVLEKL-PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
           S LE L   + +DLI   PPYN+ +N   Y  ++  +           S++ Y  F+  W
Sbjct: 45  STLENLFDEEFIDLIVTSPPYNVGIN---YNSNNDEL-----------SYQDYLDFSHQW 90

Query: 89  LLACRRVLKPNGTLWVI--------GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           +  C R  K      +         G+      + T+ Q + +   + IVW + N     
Sbjct: 91  MSNCYRWSKTQARFVLNIPLDKNKGGNRSVGADLTTIAQQVGWKYQSTIVWNEGNISRRT 150

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ--MRSDWLIPICSGSERLRNK 198
               + +A    + A   P      F  +  K  N   Q  ++ +  +   +G      +
Sbjct: 151 AWGSWLSASAPFVIA---PVELIVVFYKEQWKKTNGTKQSDLKKEEFMEWTNGLWTFNGE 207

Query: 199 DGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
             +++ HP   P  L  R +   +   D++ DPF GS T+   A + +R  IG+E+  DY
Sbjct: 208 SKKRIGHPAPFPRELPHRCIKLFSYVDDLVFDPFCGSATTLLEAYRNKRRGIGVELDLDY 267

Query: 258 IDIATKRIASVQPLGNIEL 276
            +IA +R+  ++ +G++ L
Sbjct: 268 CEIAKRRL--IESIGSLFL 284


>gi|323963718|gb|EGB59223.1| DNA methylase [Escherichia coli M863]
 gi|327252667|gb|EGE64321.1| DNA methylase family protein [Escherichia coli STEC_7v]
          Length = 361

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 34/51 (66%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           HP +KP  +L +I+ +S++PGD++ D F GSG +   A  L R  IG+E++
Sbjct: 283 HPCEKPADMLRQIISASSRPGDVVADFFMGSGATIKAAMGLGRRTIGVELE 333



 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 69/166 (41%), Gaps = 36/166 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  ++ L   SVDLI  DPPY                    + WD  + ++  
Sbjct: 11  ELINTDCLEFIQTLSENSVDLIVTDPPY---------------FKVKPEGWD--NQWKGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           D + + WL  C     RVLKP G+L++   +     I  M++   F +LN I+W K  P 
Sbjct: 54  DDYLK-WLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAK--PS 109

Query: 138 PNFRG------RRFQNAHETLIWASP-----SPKAKGYTFNYDALK 172
             + G      R +  A E +++A        PK  GY      LK
Sbjct: 110 GRWNGCNKESLRAYFPATERILFAEHYQGPYQPKNAGYAAKERELK 155


>gi|317123215|ref|YP_004097327.1| DNA methylase N-4/N-6 domain protein [Intrasporangium calvum DSM
           43043]
 gi|315587303|gb|ADU46600.1| DNA methylase N-4/N-6 domain protein [Intrasporangium calvum DSM
           43043]
          Length = 306

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 114/279 (40%), Gaps = 35/279 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYN----LQLNGQLYRPDHSLVDAVTDSWD---- 73
           +++  + ++ L + P KS+  +  DPPY          Q  R     V  +  ++D    
Sbjct: 10  ELVHTDCLTWLRRRPEKSIHAVVTDPPYGATEYTHEQQQKLRAGKGGVWRIPPAFDGHRR 69

Query: 74  ----KFSSFEAYDA-----FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
               +F++    D      F  AW    R  L P   + V  +      I   L      
Sbjct: 70  APLPRFTTMSRADLDYMHDFFYAWAEVLRPTLVPGAHVMVACNPLVSPYISMALTKAGLE 129

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK-----GYTFNYDALKAANEDVQ 179
              +IV      M    G R +NAHE  + A+  P+++      Y    +    A+   +
Sbjct: 130 RRGEIVRLV---MTMRGGDRPKNAHEEFVDATVMPRSQWEPWLLYREPLECRTVADNLRK 186

Query: 180 MRSDWLIPICSGS---ERLRNKDGEKL------HPTQKPEALLSRILVSSTKPGD-IILD 229
            ++  L  I       + +++    KL      HP+ KP++ L  ++ +S   G+ IILD
Sbjct: 187 YKTGALRRISDAQPFGDVIKSHPTRKLERQIANHPSLKPQSFLRAVVRASLPLGEGIILD 246

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           PF GSG++ A A+ +    IG+E   +Y ++A + I  +
Sbjct: 247 PFAGSGSTLAAAEAIGYQSIGLERDAEYFEVARQAIPQL 285


>gi|45569523|ref|NP_996592.1| adenine DNA methyltransferase [Bordetella phage BMP-1]
          Length = 200

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 84/213 (39%), Gaps = 33/213 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYN---LQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           ++I+G ++  L  +P++SVD +  DPPY+      + +   PD     + +    ++ +F
Sbjct: 7   QLIQGEALPALIAMPSESVDAVITDPPYSSGGFSRDDKAKDPDAKYTQSGSQG--RYPTF 64

Query: 79  -------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
                   +Y  +   W+  C RVLKP G       +  +  +   +Q    +    I W
Sbjct: 65  SGDSRDQRSYLTWCSLWIAECVRVLKPGGYFMAFTDWRQLPLMSDAVQAGGVFWRGLIAW 124

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
            K           F++  E ++W +     KG              VQ+  D     C  
Sbjct: 125 DKGRGARAPHKGYFRHQCEYVVWGT-----KGAA------------VQLEHDGPFDGCIQ 167

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
           +   R+   +K H T KP AL+ R LV    PG
Sbjct: 168 AVVRRD---DKHHLTGKPTALM-RELVRPVMPG 196


>gi|300825231|ref|ZP_07105318.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 119-7]
 gi|331667978|ref|ZP_08368834.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA271]
 gi|300522283|gb|EFK43352.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 119-7]
 gi|331064788|gb|EGI36691.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA271]
          Length = 361

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 34/51 (66%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           HP +KP  +L +I+ +S++PGD++ D F GSG +   A  L R  IG+E++
Sbjct: 283 HPCEKPADMLRQIISASSRPGDVVADFFMGSGATIKAAMGLGRRTIGVELE 333



 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 69/166 (41%), Gaps = 36/166 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  ++ LP  SVDLI  DPPY                    + WD  + ++  
Sbjct: 11  ELINADCLEFIQTLPENSVDLIVTDPPY---------------FKVKPEGWD--NQWKGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           D + + WL  C     RVLKP G+L++    H +     ++    F +LN I+W K  P 
Sbjct: 54  DDYLK-WLDQCLAQFWRVLKPAGSLYLFCG-HRLASDTEIMMRERFNVLNHIIWAK--PS 109

Query: 138 PNFRG------RRFQNAHETLIWASP-----SPKAKGYTFNYDALK 172
             + G      R +  A E +++A        PK  GY      LK
Sbjct: 110 GRWNGCNKESLRAYFPATERILFAEHYQGPYQPKNDGYAAKERELK 155


>gi|301027609|ref|ZP_07190931.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 196-1]
 gi|299879262|gb|EFI87473.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 196-1]
          Length = 112

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 38/62 (61%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R   G+E++ +  +   +
Sbjct: 43  HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAALALGRRATGVELETERFEQTVR 102

Query: 264 RI 265
            +
Sbjct: 103 EV 104


>gi|218960492|ref|YP_001740267.1| putative Modification methylase MjaI (N-4 cytosine-specific
           methyltransferase MjaI) (M.MjaI) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729149|emb|CAO80060.1| putative Modification methylase MjaI (N-4 cytosine-specific
           methyltransferase MjaI) (M.MjaI) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 350

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 14/167 (8%)

Query: 113 RIGTMLQNLNFWILNDIVWRKSNPM-------PNFRGRRFQNAHETLIWASPSPKAKGYT 165
           R   + + + F    DI+W+K+N +       P   G    N HE  I     P+ KG+ 
Sbjct: 181 RTIDLCEKIGFIFKRDIIWQKTNAVRAHFGTYPYPGGILINNMHE-FILEFDKPEKKGFN 239

Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE---KLHPTQKPEALLSRILVSSTK 222
                 K   E  ++  D+ + I      +    G    + H    P  L  R++ + + 
Sbjct: 240 KYGHLTKEQKEQSKLDKDFWLSIKKSDVWVMKPQGSGDNRNHIAPFPYELPFRLIKAFSY 299

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            G+ ILDPF GSG + + A  L+R+ IG E+   Y +IA + + +++
Sbjct: 300 VGETILDPFVGSGVTLSAAADLKRNGIGYEI---YPEIAYEAVKALR 343


>gi|74312383|ref|YP_310802.1| putative DNA adenine methyltransferase encoded by prophage
           [Shigella sonnei Ss046]
 gi|73855860|gb|AAZ88567.1| putative DNA adenine methyltransferase encoded by prophage
           [Shigella sonnei Ss046]
 gi|323168336|gb|EFZ54019.1| DNA methylase family protein [Shigella sonnei 53G]
          Length = 352

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 38/62 (61%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD+I D F G G++   A  L R  IG+E++ +  +   +
Sbjct: 283 HPCEKPAEMLQQIISASSRPGDLIADFFMGLGSTVKAALALGRRAIGVELETERFEQTVR 342

Query: 264 RI 265
            +
Sbjct: 343 EV 344



 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 70/166 (42%), Gaps = 36/166 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  +  LP  SVDLI  DPPY                    + WD  + ++  
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPY---------------FKVKPEGWD--NQWKGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           D + + WL  C     RVLKP G+L++   +     I  M++   F +LN I+W K  P 
Sbjct: 54  DDYLK-WLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAK--PS 109

Query: 138 PNFRG------RRFQNAHETLIWASP-----SPKAKGYTFNYDALK 172
             + G      R +  A E +++A        PK  GY     ALK
Sbjct: 110 GRWNGCNKESLRAYFPATERILFAEHYQGPYRPKDAGYAAKGSALK 155


>gi|317123336|ref|YP_004097448.1| DNA methylase N-4/N-6 domain protein [Intrasporangium calvum DSM
           43043]
 gi|315587424|gb|ADU46721.1| DNA methylase N-4/N-6 domain protein [Intrasporangium calvum DSM
           43043]
          Length = 225

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 5/78 (6%)

Query: 192 SERLRNKDG--EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           +ER    DG  E +H T   E L + ++   ++PGD++LDPF G GT+  VA +L R  +
Sbjct: 19  AERAAGADGADEDVHFT---EHLATEVIERLSEPGDLVLDPFAGFGTTLLVADRLGRRGL 75

Query: 250 GIEMKQDYIDIATKRIAS 267
           G+E+  + +D+   R+ +
Sbjct: 76  GVELLPERVDVVRARVPA 93


>gi|291296948|ref|YP_003508346.1| DNA methylase N-4/N-6 domain-containing protein [Meiothermus ruber
           DSM 1279]
 gi|290471907|gb|ADD29326.1| DNA methylase N-4/N-6 domain protein [Meiothermus ruber DSM 1279]
          Length = 313

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 112/297 (37%), Gaps = 79/297 (26%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY--RPDHSLVDAVTDSWDKFSSFEAYDA 83
           G+++ +L +L  +SV L+   PP+ LQ   ++Y  +P    VD                 
Sbjct: 4   GDALELLPQLEDQSVHLLLTSPPFALQ-RPKVYGNKPQVEYVD----------------- 45

Query: 84  FTRAWLLACRRV----LKPNGTLWV-----------IGSYHNIFRIGTMLQNLNFWILND 128
               WLL   R+    L P+G+L +           + S +N   +  +  ++ +++  D
Sbjct: 46  ----WLLEFMRIAYDKLHPSGSLVLDLGGAYEQGVPVRSLYNFRLLVRLCDDIGYFLAQD 101

Query: 129 IVWRKSNPMP------NFRGRRFQNAHETLIWASPSP----------------------- 159
             W   + +P      N R  R ++A  T+ W S +P                       
Sbjct: 102 FYWHNPSKLPSPIEWVNKRKIRAKDAVNTVWWLSKNPWPQADLSQVLTPYSERMKKLLRN 161

Query: 160 -------KAKGYTFNYDALKAANEDVQMRSDWLIPICSGS----ERLRNKDGEKLHPTQK 208
                  K +          A +    + S+ L    SGS    +R     G K HP + 
Sbjct: 162 PEKYYQPKERPSGHQISRAFAKDNGGALPSNLLSIPNSGSNDPYQRRCKALGLKPHPARF 221

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           P  L    +   TKP D++LD F GS T+G VA+ L R +I  E+   +   +  R 
Sbjct: 222 PAQLPEFFIRLLTKPNDLVLDIFAGSNTTGFVAEGLGRRWIAFELDAHFTATSALRF 278


>gi|167757963|ref|ZP_02430090.1| hypothetical protein CLOSCI_00299 [Clostridium scindens ATCC 35704]
 gi|167664395|gb|EDS08525.1| hypothetical protein CLOSCI_00299 [Clostridium scindens ATCC 35704]
          Length = 281

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 37/60 (61%)

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           KD  K+HP QK   +L +++ + T PGD+++DP  GSG +   A +L R+  G E+ + +
Sbjct: 196 KDVPKIHPAQKSVKVLKKLIETFTDPGDVVIDPCCGSGATLRAAHELGRNAFGFEIDRTF 255


>gi|295100556|emb|CBK98101.1| DNA modification methylase [Faecalibacterium prausnitzii L2-6]
          Length = 241

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 106/274 (38%), Gaps = 75/274 (27%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAYDAFT 85
           + I  L  LP  SVD++  DPPY    N                 WD      E ++A  
Sbjct: 2   DGIEGLRSLPKHSVDMLLTDPPYGTTRN----------------YWDVPLPLPELWEAVK 45

Query: 86  RAWLLACRRVLKPNGTLW---------VIGS-------YHNIF--RIGTMLQNLNFWIL- 126
            A        +KPNG +          V+G+       Y  I+    GT   N N   L 
Sbjct: 46  WA--------VKPNGAVLFFAQCPFDKVLGASNLAMLRYEWIWYKERGTGFLNANRAPLK 97

Query: 127 ---NDIVWRKSNPM--PNFR-GRRFQNAHETLIWASPSPKAKGYTFNYDALK----AANE 176
              N +V+ + +P+  P F  G+ +   H             G + NY   +     +N+
Sbjct: 98  KSENILVFYQKSPVYNPQFTYGKPYTRVHSR----------SGTSSNYGKFERQGSESND 147

Query: 177 DVQMRSDWL-IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
             +   + L +P  SG           +HPTQKP  L   ++ + T+PG+++ D   GSG
Sbjct: 148 GRRYPGNVLFVPTVSGG----------IHPTQKPVELCEYLIRTYTRPGELVADICAGSG 197

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           T+   A    R F+  E    +   A++RI + Q
Sbjct: 198 TTAIAAINTERRFVCFETAPAFYAAASERIRAAQ 231


>gi|15674743|ref|NP_268917.1| phage associated protein [Streptococcus phage 370.1]
 gi|94992071|ref|YP_600170.1| chromosome partitioning protein parB / adenine-specific
           methyltransferase [Streptococcus phage 2096.1]
 gi|13621867|gb|AAK33638.1| conserved hypothetical protein, phage associated [Streptococcus
           phage 370.1]
 gi|94545579|gb|ABF35626.1| Chromosome partitioning protein parB / Adenine-specific
           methyltransferase [Streptococcus phage 2096.1]
          Length = 388

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 98/239 (41%), Gaps = 31/239 (12%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           N   V + +  +  DL+  DPPYN+   G+    D   +   +   D F  F   +AF+ 
Sbjct: 167 NGADVKKLMNGELADLLLTDPPYNVAYEGK--TKDSLTIKNDSMDNDSFRQF-LVNAFSS 223

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-F 145
           A       V+KP    ++  +    +       ++ + +   ++W K++ +    GR+ +
Sbjct: 224 A-----NEVMKPGAVFYIWHADSEGYNFRGACFDIGWTVRQCLIWNKNSMV---LGRQDY 275

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
              HE  ++        G+      L A++       D+  P  +G           +HP
Sbjct: 276 HWKHEPCLY--------GWKDGAGHLWASDRKQTSVIDYEKPQRNG-----------VHP 316

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           T KP  L    + ++TK  DI+LD F GSGT+    +   R    +E    Y+D+  KR
Sbjct: 317 TMKPVGLFDYQIKNNTKGSDIVLDLFGGSGTTLIACESNGRHARLMEYDPKYVDVIIKR 375


>gi|307942430|ref|ZP_07657781.1| DNA methylase [Roseibium sp. TrichSKD4]
 gi|307774716|gb|EFO33926.1| DNA methylase [Roseibium sp. TrichSKD4]
          Length = 373

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 75/201 (37%), Gaps = 68/201 (33%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           G+ + +L  LP +SVD +   PPY    +  + GQ+   + +L + +             
Sbjct: 17  GDVLEMLATLPGESVDCVVTSPPYWGLRDYGVEGQIGL-EPTLAEHI------------- 62

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIF----------------------------- 112
            A   A     RRVLKP GTLW+  +Y + +                             
Sbjct: 63  -ALMVAVFEEVRRVLKPTGTLWL--NYGDCYASSPNGRSAADTKAEGNDNRTFRDKPFST 119

Query: 113 ---------------RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
                          R+   LQ   +W+ ++I+W K NPMP     R   AHE +   S 
Sbjct: 120 VQGVLKPKDLCMIPNRLAIALQEAGWWVRSEIIWAKPNPMPESIRDRPATAHEKIFLLSK 179

Query: 158 SPKAKGYTFNYDALKAANEDV 178
           S K   Y ++ +A++     V
Sbjct: 180 SAK---YFYDANAVRQGQHKV 197


>gi|109897009|ref|YP_660264.1| DNA methylase N-4/N-6 [Pseudoalteromonas atlantica T6c]
 gi|109699290|gb|ABG39210.1| DNA methylase N-4/N-6 [Pseudoalteromonas atlantica T6c]
          Length = 230

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 103/265 (38%), Gaps = 46/265 (17%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYN----LQLNGQLYRPDHSLVDAVTDSWDK-FSS 77
           + + +++  L   P +SV+LI  DP Y      +  G   R  +S  DA +++W   F +
Sbjct: 7   VHRQDAVDWLHMQPNQSVNLIVTDPAYQSLEKHRAKGTTTRLKNS--DASSNAWFAIFPN 64

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
              +D F  A+     RVL  N  ++V+        I  + + + F     I W K    
Sbjct: 65  DRFFDFFIEAY-----RVLDDNSHMYVMCDQETGLLIKPIAEQVGFKFWKFITWDKC--- 116

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
               G  ++N  E   W     K K    N                  + +C   + LR+
Sbjct: 117 AMGMGYHYRNQTE---WVMFLEKGKRKLNN------------------LGMC---DVLRH 152

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K     +PT+KP  L + ++  ST   + + D FFGSG     A  L R  IG       
Sbjct: 153 KRVRNGYPTEKPMQLYADLIEQSTNIDETVADVFFGSGAGLLAAHNLGRKAIG------- 205

Query: 258 IDIATKRIASVQPLGNIELTVLTGK 282
            DI+    A +Q    I  T++  K
Sbjct: 206 TDISDAAHAYLQQRAAITNTIINTK 230


>gi|307636957|gb|ADN79407.1| adenine specific DNA methyltransferase [Helicobacter pylori 908]
 gi|325995548|gb|ADZ50953.1| adenine specific DNA methyltransferase [Helicobacter pylori 2018]
 gi|325997144|gb|ADZ49352.1| Type II DNA modification enzyme/ methyltransferase [Helicobacter
           pylori 2017]
          Length = 252

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 95/246 (38%), Gaps = 28/246 (11%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
           SVLE       DL    PPYNL +  Q                + F +++ Y  + + WL
Sbjct: 18  SVLETFEKGFYDLCVTSPPYNLSIEYQ--------------GSNDFRAYDDYLNWCKNWL 63

Query: 90  LACRRVLKPNGTLWV----IGSYHNIFRIGT----MLQNLNFWILNDIVWRKSN-PMPNF 140
             C    K    L +      + H    +G     + +   +   N I+W +SN      
Sbjct: 64  KNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNESNISRRTA 123

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G   Q +    I    +P      F  +  K   +   M  +  +   +G      +  
Sbjct: 124 WGSWLQASAPYAI----APVELIVVFYKNEYKRKKQTSTMSKEEFLLYTNGLWNFSGESK 179

Query: 201 EKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E++++Y +
Sbjct: 180 KRLKHPAPFPRELPKRCIQLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEIEKEYCE 239

Query: 260 IATKRI 265
           ++ KRI
Sbjct: 240 LSKKRI 245


>gi|257052261|ref|YP_003130094.1| DNA methylase N-4/N-6 domain protein [Halorhabdus utahensis DSM
           12940]
 gi|256691024|gb|ACV11361.1| DNA methylase N-4/N-6 domain protein [Halorhabdus utahensis DSM
           12940]
          Length = 344

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 114/275 (41%), Gaps = 52/275 (18%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNL-QLNGQLYRP-DHSLVDAVTDSWDK 74
            E    ++ G++  +   LPA SVDL+   PPY + ++   ++   D ++ DA+ D+ D 
Sbjct: 1   METDHAVVTGDAREL--SLPADSVDLVVTSPPYPMIEMWDDIFAALDPAIGDAL-DADDG 57

Query: 75  FSSFEA-YDAFTRAWLLACRRVLKPNG-----------TLWVIGSYHNIFRIGTMLQNLN 122
             +FEA +D     W    +RVL   G           TL     Y N   I   + +  
Sbjct: 58  QRAFEAMHDVLDVVWE-QLQRVLVEGGIAAINVGDATRTLDRFRQYPNAGEITRRMVDYG 116

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNA------------HETLIWASPSPK---AKGYTFN 167
           F  L DIVWRK    P   G +F  +            HE+++     P+     G    
Sbjct: 117 FDPLPDIVWRK----PANSGAKFMGSGMVPPNAYPTLEHESILLFRNGPRRSFPPGDETR 172

Query: 168 YDALKAANEDVQMRSD-WLIPICSGSER-----LRNKDGEKLHPTQKPEALLSRILVSST 221
           Y++     E  Q  SD W +   +G+ +     LR + G    P + P  L+    V   
Sbjct: 173 YESAYFWEERNQWFSDLWEM---TGTPQGLDAGLRERSG--AFPVEIPLRLIRMFSVY-- 225

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
             GD +LDPF+G+GT+   A    R  +G E   D
Sbjct: 226 --GDTVLDPFWGTGTTTLAAMLAGRESVGYERDAD 258


>gi|108562690|ref|YP_627006.1| type II DNA modification enzyme [Helicobacter pylori HPAG1]
 gi|107836463|gb|ABF84332.1| type II DNA modification enzyme [Helicobacter pylori HPAG1]
          Length = 252

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 97/245 (39%), Gaps = 26/245 (10%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
           SVLE       DL    PPYNL +  Q                + F +++ Y  + + WL
Sbjct: 18  SVLETFEKGFYDLCVTSPPYNLSIEYQ--------------GSNDFRAYDDYLNWCKNWL 63

Query: 90  LACRRVLKPNGTLW----VIGSYHNIFRIG----TMLQNLNFWILNDIVWRKSNPMPNFR 141
             C    K    L     +  + H    +G     + +   +   N I+W +SN     R
Sbjct: 64  KNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAVAKECGWKYQNTIIWNESNIS---R 120

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
              + +  +  +  + +P      F  +  K   +   M  +  +   +G      +  +
Sbjct: 121 RTAWGSWLQASVPYAIAPVELIVVFYKNEYKRKKQTSTMSREEFLLYTNGLWNFSGESKK 180

Query: 202 KL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E++++Y ++
Sbjct: 181 RLKHPAPFPRELPRRCIQLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEIEKEYCEL 240

Query: 261 ATKRI 265
           + KRI
Sbjct: 241 SKKRI 245


>gi|134288432|ref|YP_001110595.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134133082|gb|ABO59792.1| DNA methylase N-4/N-6 domain protein [Burkholderia vietnamiensis
           G4]
          Length = 409

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           + G  +HP + P  L    L  +T+ GD  LDPF GS  +GAVA+++ R +IGI+   +Y
Sbjct: 320 EQGLPVHPARFPADLPRHFLALTTREGDTCLDPFGGSLETGAVAEEMGRHWIGIDCNLEY 379

Query: 258 I 258
           +
Sbjct: 380 L 380


>gi|331681946|ref|ZP_08382579.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H299]
 gi|294490683|gb|ADE89439.1| DNA methylase [Escherichia coli IHE3034]
 gi|331081148|gb|EGI52313.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H299]
          Length = 353

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 40/63 (63%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  +G+E++ +  +   +
Sbjct: 283 HPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALGRRALGVELETERFNQTIQ 342

Query: 264 RIA 266
            I+
Sbjct: 343 EIS 345



 Score = 43.9 bits (102), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 19/113 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           +I  + +  ++ LP  S+DLI  DPPY  ++ NG                WD ++   E 
Sbjct: 12  LINADCLHFIQSLPDDSIDLIVTDPPYFKVKPNG----------------WDNQWKGDED 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K
Sbjct: 56  YLKWLDHCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAK 107


>gi|313124724|ref|YP_004034983.1| DNA recognition and methylase subunit mod (type iii restriction and
           modification system),llafi-like protein [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312281287|gb|ADQ62006.1| DNA recognition and methylase subunit Mod (Type III restriction and
           modification system),LlaFI-like protein [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 538

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 42/73 (57%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           R++ G +    +KPEAL+  I+   +   D +LD F GSG++ A A K++R +IGIEM  
Sbjct: 326 RHEGGVEFRSGKKPEALIEMIIRYFSNKTDWVLDSFLGSGSTTATAHKMQRRWIGIEMGD 385

Query: 256 DYIDIATKRIASV 268
               +   R+ +V
Sbjct: 386 HAYTLCKTRMDNV 398


>gi|238898170|ref|YP_002923851.1| DNA methylase, N6_N4_Mtase domain protein [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229465929|gb|ACQ67703.1| DNA methylase, N6_N4_Mtase domain protein [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 360

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP ALL  I+ +S+KP   + D F GSG++   A +  R  IG+E++ D      K
Sbjct: 285 HPCEKPAALLEHIINASSKPKHTVADFFMGSGSTVKAAIQSGRQAIGVELETDRFLQTKK 344

Query: 264 RIASVQPLGNIE 275
            I ++ P  N +
Sbjct: 345 EIENLIPQINYQ 356



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 30/161 (18%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK-FSSFEAY 81
           ++ G+++  ++ LP  S+DLI  DPPY        YR         + +W++ + +   Y
Sbjct: 9   LVNGDALPYVKTLPDDSIDLILTDPPY--------YR-------VKSCAWERQWKTTGQY 53

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+   +L+  +R+LKPNG+L++  S         M +N +  +LN I+W K    P  R
Sbjct: 54  LAWLNDYLVEFQRILKPNGSLYLFCSAELAADTEIMPRN-HMRMLNHIIWAK----PYGR 108

Query: 142 G--------RRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
           G        R + ++ E +++A     A+G   N D  K A
Sbjct: 109 GTGCSKEWLRSYFSSTERILFAEQY-GAEGTAKNKDGYKCA 148


>gi|45580774|ref|NP_996640.1| adenine DNA methyltransferase [Bordetella phage BIP-1]
          Length = 258

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 84/213 (39%), Gaps = 33/213 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYN---LQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           ++I+G ++  L  +P++SVD +  DPPY+      + +   PD       + S  ++ +F
Sbjct: 7   QLIQGEALPALIAMPSESVDAVITDPPYSSGGFSRDDKAKDPDAKYTQ--SGSQGRYPTF 64

Query: 79  -------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
                   +Y  +   W+  C RVLKP G       +  +  +   +Q    +    I W
Sbjct: 65  SGDSRDQRSYLTWCSLWIAECVRVLKPGGYFMAFTDWRQLPLMSDAVQAGGVFWRGLIAW 124

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
            K           F++  E ++W +     KG              VQ+  D     C  
Sbjct: 125 DKGRGARAPHKGYFRHQCEYVVWGT-----KGAA------------VQLEHDGPFDGCIQ 167

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
           +   R+   +K H T KP AL+ R LV    PG
Sbjct: 168 AVVRRD---DKHHLTGKPTALM-RELVRPVMPG 196


>gi|262066934|ref|ZP_06026546.1| DNA (cytosine-5-)-methyltransferase [Fusobacterium periodonticum
           ATCC 33693]
 gi|291379347|gb|EFE86865.1| DNA (cytosine-5-)-methyltransferase [Fusobacterium periodonticum
           ATCC 33693]
          Length = 389

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 130/339 (38%), Gaps = 93/339 (27%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS------WDKFSSFEAYDAFTRAWLLACR 93
           VDL++ DPPYN +    ++  D+     ++ S      +    +F+ Y  F R  L+   
Sbjct: 57  VDLVYIDPPYNTK---SIFYYDNKKTSTISSSKNVDIAYKDNMNFKDYLEFIRERLILIH 113

Query: 94  RVLKPNGTLWV-----IGSY---------------HNIFRIGTMLQNLN---FWILNDIV 130
           ++L P GTL++     +G Y               ++I R+ +  +N +   +    D++
Sbjct: 114 KLLSPKGTLYLHIDIKVGHYIKIILDEIFGTNNFINDITRVKSNPKNFSRNAYGNEKDVI 173

Query: 131 WRKS------------NPM------PNF-----RGRRF-----------QNAHETLIWAS 156
           +  S            NP+       NF      GRR+           +N    + W  
Sbjct: 174 YVYSKIEKNNIFNNILNPVSKEKIEKNFSKIDKNGRRYTTVPCHAPGETKNGVTGMKWKD 233

Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL----RNKDGEKL--------- 203
             P  KG  + Y   +    D   R +W     +G  R+       +GEK+         
Sbjct: 234 IFP-PKGRHWRYSPEELEKLDKDNRIEWS---KNGVPRIIKYADEHNGEKIQDIWKDFKD 289

Query: 204 -----HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                +PTQK   +L  I+  S+    II+D F GS +   +  K  R  IGI    D  
Sbjct: 290 PQYPDYPTQKNFDMLELIIKQSSNENSIIMDCFAGSASFLEMGLKNNRFVIGI----DNS 345

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVA-FNLLVER 296
           DIA K + S Q L  IE+ +   K  E +    NL  E 
Sbjct: 346 DIAYKLLLSNQNLQKIEVIIQDKKNNEKQFKQMNLFKEE 384


>gi|197284843|ref|YP_002150715.1| phage DNA adenine-methylase [Proteus mirabilis HI4320]
 gi|194682330|emb|CAR42127.1| phage DNA adenine-methylase [Proteus mirabilis HI4320]
          Length = 340

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 40/65 (61%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           H  +KP A++  I+ SS++ GD++ D F GSG +   A KL R  +G+E++++  +   +
Sbjct: 273 HLCEKPSAMMEHIIRSSSREGDLVADFFMGSGATLKAALKLNRKVLGVELEKERFEQTEQ 332

Query: 264 RIASV 268
            I ++
Sbjct: 333 EIKAL 337



 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 17/113 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++   +++++L+ LP   +DLI  DPPY        +R      D   + WD   + EAY
Sbjct: 2   QLYNNDALAILKTLPDNYIDLIATDPPY--------FRVKSCAWD---NQWD---NVEAY 47

Query: 82  DAFTRAWLLACRRVLKPNGTLWVI-GSYHNIFRIGTMLQNLNFWILNDIVWRK 133
            ++    L+   RVLKPNG+L++  GS   +     +L    F +L+ I+W K
Sbjct: 48  LSWFDEVLVEFWRVLKPNGSLYLFCGS--KLASDTELLVRGRFNVLSHIIWAK 98


>gi|225020946|ref|ZP_03710138.1| hypothetical protein CORMATOL_00957 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946285|gb|EEG27494.1| hypothetical protein CORMATOL_00957 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 340

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 39/65 (60%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           H  QKP  L+ R + ++T PGD++ +PF G  ++   A +L R+    E  QD+  +A +
Sbjct: 271 HLNQKPLDLMERCINATTNPGDVVWEPFGGLCSASVAAVRLGRTAFSAEPNQDFYQLAYE 330

Query: 264 RIASV 268
           R++S+
Sbjct: 331 RLSSL 335


>gi|297587086|ref|ZP_06945731.1| DNA (cytosine-5-)-methyltransferase [Finegoldia magna ATCC 53516]
 gi|297575067|gb|EFH93786.1| DNA (cytosine-5-)-methyltransferase [Finegoldia magna ATCC 53516]
          Length = 416

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 3/70 (4%)

Query: 198 KDGEKL---HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           KD EK    HP+ KP  L++ ++  ST+   ++LD F GS ++    ++L R   GIE++
Sbjct: 318 KDSEKEGCGHPSSKPVPLIAYLIKQSTQTNGLVLDGFLGSASTLIACEELNRICYGIEIE 377

Query: 255 QDYIDIATKR 264
             ++D+A KR
Sbjct: 378 PKFVDVAVKR 387


>gi|217031482|ref|ZP_03436987.1| hypothetical protein HPB128_21g40 [Helicobacter pylori B128]
 gi|298736790|ref|YP_003729320.1| putative adenine-specific DNA-methyltransferase [Helicobacter
           pylori B8]
 gi|216946682|gb|EEC25278.1| hypothetical protein HPB128_21g40 [Helicobacter pylori B128]
 gi|298355984|emb|CBI66856.1| putative adenine-specific DNA-methyltransferase [Helicobacter
           pylori B8]
          Length = 252

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 95/246 (38%), Gaps = 28/246 (11%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
           SVLE       DL    PPYNL +  Q                + F +++ Y  + + WL
Sbjct: 18  SVLETFEKGFYDLCVTSPPYNLSIEYQ--------------GSNDFRAYDDYLNWCKNWL 63

Query: 90  LACRRVLKPNGTLWV----IGSYHNIFRIGT----MLQNLNFWILNDIVWRKSN-PMPNF 140
             C    K    L +      + H    +G     + +   +   N I+W +SN      
Sbjct: 64  KNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNESNISRRTA 123

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G   Q +    I    +P      F  +  K   +   M  +  +   +G      +  
Sbjct: 124 WGSWLQASTPYAI----APVELIVVFYKNEYKRKKQTSTMSKEEFLLYTNGLWNFSGESK 179

Query: 201 EKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E++++Y +
Sbjct: 180 KRLKHPAPFPRELPRRCIQLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEIEKEYCE 239

Query: 260 IATKRI 265
           ++ KRI
Sbjct: 240 LSKKRI 245


>gi|255012034|ref|ZP_05284160.1| DNA methylase N-4/N-6 domain protein [Bacteroides fragilis 3_1_12]
 gi|313149874|ref|ZP_07812067.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides
           fragilis 3_1_12]
 gi|313138641|gb|EFR56001.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides
           fragilis 3_1_12]
          Length = 447

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 104/257 (40%), Gaps = 48/257 (18%)

Query: 38  KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS-SFEAY-DAFTRAWLLACRRV 95
           +SV LI   PPY              L D  +D    F+ S+E Y +     W   C RV
Sbjct: 7   ESVQLIVTSPPY------------WQLKDYGSDKQIGFNDSYEEYINNLNLVWN-ECFRV 53

Query: 96  LKPNGTLWV-IGS------YHNIFR-------IGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           L+P   L + IG       Y++ ++       I    + + F  +  IVW+K   M    
Sbjct: 54  LEPGCRLCINIGDQFARSVYYSRYKVIPIHSEIIRFCEEVGFDYMGSIVWQKPTSMHTTG 113

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDAL-------KAANEDVQMRSDWLIPICSGSER 194
           G       E ++ + P P+      +++ +       KA     + +      I   +E 
Sbjct: 114 G-------EKIMGSFPYPRGGIVKIDFEHILLFKKIGKATPISREKKEASKFTIEEWNEY 166

Query: 195 LRNK-----DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
             +        +  H    PE L  R++   +  GD +LDPF GSGT+  VA+ L R+ I
Sbjct: 167 FSSHWTFGGARQDKHIAVFPEELPKRLIRMFSFVGDTVLDPFMGSGTTALVARNLNRNSI 226

Query: 250 GIEMKQDYIDIATKRIA 266
           G E+ ++++    +++ 
Sbjct: 227 GYEINKNFLQFYKEKVV 243


>gi|189466780|ref|ZP_03015565.1| hypothetical protein BACINT_03156 [Bacteroides intestinalis DSM
           17393]
 gi|189435044|gb|EDV04029.1| hypothetical protein BACINT_03156 [Bacteroides intestinalis DSM
           17393]
          Length = 631

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 119/304 (39%), Gaps = 70/304 (23%)

Query: 23  IIKGNSISVLEKLPAK--SVDLIFADPPY--NLQLNGQLY-RPDHSLVDAVT-------- 69
           II+G  +S    L  K  SVDL++ DPP+        ++Y R +  + +A+         
Sbjct: 65  IIRGECVSACAYLKDKGISVDLVYIDPPFASGADYAKKVYIRRNPKVAEAMRQAETELDV 124

Query: 70  ------------DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
                       D WDK    E Y  +    L+A + V+    +++V   +H    +  +
Sbjct: 125 EELKAFEEKMYGDIWDK----ERYLNWMYENLMAIKSVMSDTASIYVHLDWHIGHYVKVL 180

Query: 118 LQNL----NFWILNDIVWRKSNP-MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
           +  +    NF  +N+IVW  + P  P  +   F   H+T+ W       + Y FN   ++
Sbjct: 181 MDEVFGEDNF--VNEIVWCYNGPGSPGMQ--HFNKKHDTIFWYCKD--KQDYIFNDKDIR 234

Query: 173 AA-------------------------NEDVQMRSDWLIPICSGSERLRNKDGEKL--HP 205
                                      NE  ++  DW     +    +   DG K   + 
Sbjct: 235 MTHNAKTIDNFKKGLVGSGFISDTYDLNEKGKIPEDWWKYAVASRYPV---DGIKRVEYA 291

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T+KP  L+ RI+++S+   DI+ D F GSG     +    R FI  ++  + I     R+
Sbjct: 292 TEKPYPLIERIVLASSNSNDIVADFFGGSGVLSTASHLNNRRFIHCDIGINSIQTVRDRL 351

Query: 266 ASVQ 269
            + +
Sbjct: 352 IAAK 355


>gi|225847886|ref|YP_002728049.1| modification methylase MjaVI (N-4
           cytosine-specificmethyltransferase MjaVI) (M.MjaVI)
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643473|gb|ACN98523.1| modification methylase MjaVI (N-4
           cytosine-specificmethyltransferase MjaVI) (M.MjaVI)
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 325

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP   P  L  R +   +   D++LDPF GSGT+   A K  R  IG+E+ ++YID++ +
Sbjct: 249 HPAPFPLELPKRCIKLFSYKDDLVLDPFSGSGTTLIAAFKEERRAIGVEIDKNYIDLSVE 308

Query: 264 RIA 266
           R+ 
Sbjct: 309 RLT 311


>gi|54026003|ref|YP_120245.1| putative DNA methyltransferase [Nocardia farcinica IFM 10152]
 gi|54017511|dbj|BAD58881.1| putative DNA methyltransferase [Nocardia farcinica IFM 10152]
          Length = 221

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 14/137 (10%)

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW----------LIPI 188
            +R  R  N    L+W        G      A  +++E++ +   W          ++  
Sbjct: 80  TWRVPRPPNPKLVLVWDKTDGTGPGMGDLTCAFGSSHEEIYLWGKWPRGQHRRMGSVLRT 139

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
             G   L  K G   HPT KP  L+   L+  + P  +I DPF GSG++   A+ L R  
Sbjct: 140 AVGMSSLSRKIG---HPTPKPIGLME-TLIERSIPDGVIADPFAGSGSTLVAAQNLGRRA 195

Query: 249 IGIEMKQDYIDIATKRI 265
           +G+E+++ Y ++  +R+
Sbjct: 196 VGVELEERYCELIARRL 212


>gi|317013708|gb|ADU81144.1| putative adenine-specific DNA-methyltransferase [Helicobacter
           pylori Gambia94/24]
          Length = 252

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 95/246 (38%), Gaps = 28/246 (11%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
           SVLE       DL    PPYNL +  Q                + F +++ Y  + + WL
Sbjct: 18  SVLETFEKGFYDLCVTSPPYNLSIEYQ--------------GSNDFRAYDDYLNWCKNWL 63

Query: 90  LACRRVLKPNGTLWV----IGSYHNIFRIGT----MLQNLNFWILNDIVWRKSN-PMPNF 140
             C    K    L +      + H    +G     + +   +   N I+W +SN      
Sbjct: 64  KNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAVAKECGWKYQNTIIWNESNISRRTA 123

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G   Q +    I    +P      F  +  K   +   M  +  +   +G      +  
Sbjct: 124 WGSWLQASAPYAI----APVELIVVFYKNEYKRKKQTSTMSKEEFLLYTNGLWNFSGESK 179

Query: 201 EKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E++++Y +
Sbjct: 180 KRLKHPAPFPRELPRRCIQLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEIEKEYCE 239

Query: 260 IATKRI 265
           ++ KRI
Sbjct: 240 LSKKRI 245


>gi|311070558|ref|YP_003975481.1| putative DNA methylase [Bacillus atrophaeus 1942]
 gi|21759276|sp|O68556|MTB1_BACSU RecName: Full=Modification methylase BglI; Short=M.BglI; AltName:
           Full=BglI modification methyltransferase; AltName:
           Full=N(4)- cytosine-specific methyltransferase BglI
 gi|2952320|gb|AAC63974.1| BglI modification methyltransferase [Bacillus subtilis]
 gi|310871075|gb|ADP34550.1| putative DNA methylase [Bacillus atrophaeus 1942]
          Length = 348

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           R  W IP        +N D E   P   P+ L+  +    T+ GD +LD F GSGT+   
Sbjct: 231 RGIWYIPSVR-----KNDDHEAKFPLLLPQRLIKLL----TQKGDTVLDCFMGSGTTAVA 281

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIAS 267
           A    R+FIGIE +  YI ++ K + +
Sbjct: 282 ALSESRNFIGIEKEPKYIQLSNKNVET 308


>gi|311977223|gb|ADQ20484.1| M2.BfaI [Bacteroides fragilis]
          Length = 461

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 104/255 (40%), Gaps = 44/255 (17%)

Query: 38  KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK 97
           +SV LI   PPY  QL    Y  D  +     DS++     E  +     W   C RVL+
Sbjct: 21  ESVQLIVTSPPY-WQLKD--YGSDKQI--GFNDSYE-----EYINNLNLVWN-ECFRVLE 69

Query: 98  PNGTLWV-IGS------YHNIFR-------IGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
           P   L + IG       Y++ ++       I    + + F  +  IVW+K   M    G 
Sbjct: 70  PGCRLCINIGDQFARSVYYSRYKVIPIHSEIIRFCEEVGFDYMGSIVWQKPTSMHTTGG- 128

Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDAL-------KAANEDVQMRSDWLIPICSGSERLR 196
                 E ++ + P P+      +++ +       KA     + +      I   +E   
Sbjct: 129 ------EKIMGSFPYPRGGIVKIDFEHILLFKKIGKATPISREKKEASKFTIEEWNEYFS 182

Query: 197 NK-----DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           +        +  H    PE L  R++   +  GD +LDPF GSGT+  VA+ L R+ IG 
Sbjct: 183 SHWTFGGARQDKHIAVFPEELPKRLIRMFSFVGDTVLDPFMGSGTTALVARNLNRNSIGY 242

Query: 252 EMKQDYIDIATKRIA 266
           E+ ++++    +++ 
Sbjct: 243 EINKNFLQFYKEKVV 257


>gi|307943752|ref|ZP_07659096.1| DNA methylase [Roseibium sp. TrichSKD4]
 gi|307773382|gb|EFO32599.1| DNA methylase [Roseibium sp. TrichSKD4]
          Length = 373

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 68/209 (32%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWD 73
           E K  +  G+ + +L  LP +SVD +   PPY    +  + GQ+   + +L + +     
Sbjct: 9   EGKVALHVGDVLEMLATLPDESVDCVVTSPPYWGLRDYGVEGQIGL-EPTLAEHI----- 62

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF--------------------- 112
                    A   A     RRVLKP GTLW+  +Y + +                     
Sbjct: 63  ---------ALMVAVFEEVRRVLKPTGTLWL--NYGDCYASSPNGRSAADTKAEGNDNRT 111

Query: 113 -----------------------RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAH 149
                                  R+   LQ   +W+ ++I+W K NPMP     R   AH
Sbjct: 112 FRDKPFSTVQGVLKPKDLCMIPNRLAIALQEAGWWVRSEIIWAKPNPMPESIRDRPATAH 171

Query: 150 ETLIWASPSPKAKGYTFNYDALKAANEDV 178
           E +   S S K   Y ++ +A++     V
Sbjct: 172 EKIFLLSKSAK---YFYDANAVRQGQHKV 197


>gi|319947991|ref|ZP_08022168.1| site-specific DNA-methyltransferase (adenine-specific) [Dietzia
           cinnamea P4]
 gi|319438337|gb|EFV93280.1| site-specific DNA-methyltransferase (adenine-specific) [Dietzia
           cinnamea P4]
          Length = 392

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI-DIATKR 264
           T KPEAL+ RI+  +T+PG++++D F GSGT+   A+ L R ++ +E   D + D+   R
Sbjct: 328 TPKPEALMRRIVELATEPGELVVDLFAGSGTTAVAARALGRRWVVVERNPDTVHDVLVPR 387

Query: 265 I 265
           +
Sbjct: 388 L 388


>gi|15611318|ref|NP_222969.1| type II DNA modification (methyltransferase [Helicobacter pylori
           J99]
 gi|4154765|gb|AAD05824.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
           pylori J99]
          Length = 252

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 96/246 (39%), Gaps = 28/246 (11%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
           SVLE       DL    PPYNL +  Q                + F +++ Y  + + WL
Sbjct: 18  SVLETFEKGFYDLCVTSPPYNLSIEYQ--------------GSNDFRAYDDYLNWCKNWL 63

Query: 90  LACRRVLKPNGTLWV----IGSYHNIFRIG---TMLQNLNFW-ILNDIVWRKSN-PMPNF 140
             C    K    L +      + H    +G   T++     W   N I+W +SN      
Sbjct: 64  KNCYFWGKEQARLCLNVPLDTNKHGKQSLGADITIVAKECGWKYQNTIIWNESNISRRTA 123

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G   Q +    I    +P      F  +  K   +   M  +  +   +G      +  
Sbjct: 124 WGSWLQASAPYAI----APVELIVVFYKNEYKRKKQTSTMSREEFLLYTNGLWNFSGESK 179

Query: 201 EKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E++++Y +
Sbjct: 180 KRLKHPAPFPRELPRRCIQLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEIEKEYCE 239

Query: 260 IATKRI 265
           ++ KRI
Sbjct: 240 LSKKRI 245


>gi|328947572|ref|YP_004364909.1| DNA methylase N-4/N-6 domain protein [Treponema succinifaciens DSM
           2489]
 gi|328447896|gb|AEB13612.1| DNA methylase N-4/N-6 domain protein [Treponema succinifaciens DSM
           2489]
          Length = 377

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           D  K+HPT KP  L+  I+   TK  +I+ D F G G S   A    R  IGI++ Q+YI
Sbjct: 138 DIRKIHPTPKPPQLMKEIIEFFTKENEIVFDYFMGVGGSLLGAGLANRKAIGIDLNQNYI 197

Query: 259 D---IATKRIA 266
           D   +A K I 
Sbjct: 198 DAYKLAAKEIG 208


>gi|317127854|ref|YP_004094136.1| DNA methylase N-4/N-6 domain protein [Bacillus cellulosilyticus DSM
           2522]
 gi|315472802|gb|ADU29405.1| DNA methylase N-4/N-6 domain protein [Bacillus cellulosilyticus DSM
           2522]
          Length = 278

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 112/284 (39%), Gaps = 60/284 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD-AVTDSWDKFSSFEA 80
           K+   +S   + ++   ++DLI   PPY             +L+D +  D   K  S++ 
Sbjct: 4   KLYNKDSTVDMNEIQTGTIDLIVTSPPY------------WNLIDYSHPDQLGKGLSYKM 51

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVI------GSYHN-----IFRIGTML-----QNLNFW 124
           +    +  L  C RVLK +  + ++      G Y       I+ + + L     + ++F 
Sbjct: 52  FMKKIKKNLFECMRVLKEDAFICIVVGDVRTGEYKQNGRPRIYSLQSSLIEYFTEEMDFD 111

Query: 125 ILNDIVWRK----SNPMPNFRGRRFQNAHE----------------TLIWASPSPKAKGY 164
           +    +W K        PN  G      ++                 L++  P  +++G 
Sbjct: 112 LFQHFIWEKFGVKKGNGPNIYGSVGTGKNKDKAVGPLLYSDLIMEHILVFRKPGKRSRGS 171

Query: 165 TFNYDALKAANEDVQMRSD---WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
                + K   E++ M+ +   WL P+        +K     HP   P+ L  R+++  +
Sbjct: 172 IAERLSHK---ENILMKEELVEWLNPVWKIHSPHNSK-----HPATFPDELCKRLILLFS 223

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
              D +LDPF G+GT+   A  L R+  G E+   YIDI    I
Sbjct: 224 LKDDKVLDPFAGTGTTLINALNLGRNAYGYEINPKYIDIIKSNI 267


>gi|298483961|ref|ZP_07002131.1| DNA (cytosine-5-)-methyltransferase [Bacteroides sp. D22]
 gi|298269870|gb|EFI11461.1| DNA (cytosine-5-)-methyltransferase [Bacteroides sp. D22]
          Length = 256

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 103/262 (39%), Gaps = 59/262 (22%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           +FE    + K + + V+  L   S+DL+  DPP+ +                    WDK 
Sbjct: 5   VFEKDITLYKADCLEVMPLLSESSIDLVLCDPPFGI----------------TASQWDKI 48

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS--YHNIFRIGTMLQNLNFWILNDIVWRK 133
                   F++ W    RRV K N    + GS  + ++ R G + +    W     VW K
Sbjct: 49  I------PFSKMW-EEIRRVRKDNAPTALFGSEPFSSLLRCGNLAEFKYDW-----VWEK 96

Query: 134 SNPMPNFRGRRFQ--NAHETLIWASPSPKAKGYTFNYDALKAAN--EDVQMR-SDW--LI 186
           S    NF   + Q   AHE +     S    G T  Y  ++     E+   R S+W  + 
Sbjct: 97  SK-ASNFLLAKKQPLKAHELI-----SIFCNGRTPYYPIMEEGEPYENRTKRGSNWTGVN 150

Query: 187 PICSGSERLRNK----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
            + + + R  NK                +G+ +H  QKP ALL  ++ + TK GD +LD 
Sbjct: 151 KVPNPTFRNENKGTRYPRSVKYFKTAESEGKTIHVNQKPVALLKYLIKTYTKEGDTVLDF 210

Query: 231 FFGSGTSGAVAKKLRRSFIGIE 252
             GS ++        R  I IE
Sbjct: 211 ASGSMSTAIACIHTNRKCICIE 232


>gi|113200567|ref|YP_717729.1| putative DNA methyl transferase [Synechococcus phage syn9]
 gi|76574466|gb|ABA47031.1| putative DNA methyl transferase [Synechococcus phage syn9]
          Length = 281

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 106/298 (35%), Gaps = 95/298 (31%)

Query: 29  ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
           +  ++++ A+SVDL    PPY+   + + Y          +  WD F+ F+   A     
Sbjct: 13  VDGMQQMDAESVDLCITSPPYD---DLRTYND--------SSKWD-FNVFKDVAA----- 55

Query: 89  LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR-GRRFQN 147
                RVLKP G +                     W +ND   + S    +FR    F +
Sbjct: 56  --GLARVLKPGGII--------------------MWNVNDATVKGSETGSSFRQCLHFMD 93

Query: 148 AH-----ETLIWA------SPSPKAKGYT--FNYDAL------KAANEDVQMRSDWLIPI 188
           AH     +T+I+       +  PK+  YT  F Y  +      K  N     ++ W    
Sbjct: 94  AHGFRLHDTMIYEKTGTAFASGPKSVRYTQIFEYCFILSKGKPKTINLIQDKKNKWAGYT 153

Query: 189 CSGSERLRNKDG------------------------------------EKLHPTQKPEAL 212
             G+   R KDG                                       HP   PE L
Sbjct: 154 SFGNAVTRKKDGTFNDPGKKSNAIREWGVRTNIWKIKNSGGFGQSSKASYKHPATMPEEL 213

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
               + + +  GD+I+DPF G+GT+  +  +  R+FIG E+   Y ++   R     P
Sbjct: 214 ARGHIQTWSNKGDLIIDPFMGAGTTAQMCIEEGRNFIGFEIDPTYHEMCLDRAKESTP 271


>gi|302133240|ref|ZP_07259230.1| DNA methylase N-4/N-6 [Pseudomonas syringae pv. tomato NCPPB 1108]
          Length = 363

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 81/371 (21%), Positives = 136/371 (36%), Gaps = 133/371 (35%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           +I+ G+ I ++ KLP +SV      PPY    +  + GQ+          + ++  +F +
Sbjct: 6   QILVGDCIDMMRKLPDESVHTCVTSPPYYGLRDYGVEGQI---------GLEETPAEFIA 56

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWV------IGSY----------------------- 108
               D F        RRVL+ +GT+WV       GS+                       
Sbjct: 57  -RLVDVFRE-----VRRVLRADGTIWVNMGDSYAGSWGAHGRDDMGVGVSTISQRQVMAS 110

Query: 109 --------HNIF----------RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
                   H  +          R+   LQ+  +++  DI+W K NPMP     R   +HE
Sbjct: 111 QRKSKATTHAEYKPKDLMGMPWRLAFALQDDGWYLRQDIIWHKPNPMPESTRDRCTKSHE 170

Query: 151 TLIWASPSPKAKGYTFNYDALK---AANEDVQMRSDWLIPICSGSERLRNK--------- 198
            L   S SP+   Y ++ +A+K   A +  V+M  D  I    GS+R+  K         
Sbjct: 171 YLFLLSKSPR---YYYDQNAIKEPVALSSIVRMAQD--IEQQHGSDRVPGKSNGPMKAVR 225

Query: 199 ---DGEKLHPTQKPEALLSRILVS---------------------------------STK 222
              D  K   +++ +A+  + + +                                 +T 
Sbjct: 226 SRRDSFKREGSKREQAIPGQTVGTHRPDRDDSDYPLDVRNKRSVWSVPTVGFKGAHFATF 285

Query: 223 PGDII--------------LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           P D+I              LDPF G+GT+  V+ +  R  I  E+  +Y  +A  RI + 
Sbjct: 286 PPDLIRPCILAGAPRGGVVLDPFGGAGTTSLVSMQEGRRSIICELNPEYAALARARIDAA 345

Query: 269 QPLGNIELTVL 279
              G  ++ V 
Sbjct: 346 WLDGAAQMDVF 356


>gi|117924549|ref|YP_865166.1| nuclease [Magnetococcus sp. MC-1]
 gi|117608305|gb|ABK43760.1| ParB domain protein nuclease [Magnetococcus sp. MC-1]
          Length = 444

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 106/282 (37%), Gaps = 38/282 (13%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLY------RPDHSLVDAVTDS----WDKFS 76
           N   V+  +  +   L   DPPY +  +G  +      R   SL    +DS    WD  S
Sbjct: 185 NPDDVIRLMNGERAILFATDPPYLVDYDGTNHPGSKETRKRESLNKDWSDSYGVTWDDSS 244

Query: 77  SF-EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
              E Y+ F R    A    ++PN   +   +      +  + + +  +    I+W K  
Sbjct: 245 QGPELYEGFIRT---AIDHAIEPNAAWYCWHASKRQAMLEAVWEKMGAFQHQQIIWNKEK 301

Query: 136 PMPNFRGRRFQNAHETLIW--ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
            +       +++    + W   +  PKA G  F             + + W I   SG E
Sbjct: 302 GVLTRSKYLWKHEPCLMGWIKGNMPPKADGAEF-------------LSTVWDIQGLSGDE 348

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           R         HPT KP    +  +    + G +  +PF GSG+     +   R    +E+
Sbjct: 349 RPD-------HPTPKPLDCFAIPMRQHVERGGLCYEPFSGSGSQIMAGEMTGRRVHAMEI 401

Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
              Y+D+A KR   +Q  G I     +G ++   VA +  +E
Sbjct: 402 SPIYVDVAVKRF--IQATGKIVYLDGSGGKSFEDVAADRGIE 441


>gi|322835213|ref|YP_004215239.1| DNA methylase N-4/N-6 domain protein [Rahnella sp. Y9602]
 gi|321170414|gb|ADW76112.1| DNA methylase N-4/N-6 domain protein [Rahnella sp. Y9602]
          Length = 351

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 37/53 (69%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           HP +KP  ++  I+ +S++PGD++ D F GSG++   A KL R  +G+E++++
Sbjct: 282 HPCEKPAEMMRDIISASSRPGDVVADFFMGSGSTIKEAIKLGRFALGVELEEE 334



 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 21/114 (18%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY- 81
           II  +S+  ++ LP   +DLI  DPPY        +R      D   + W   S++ A+ 
Sbjct: 12  IICADSLQYIKTLPDDCIDLIATDPPY--------FRVKSCKWD---NQWPDESAYLAWL 60

Query: 82  -DAFTRAWLLACRRVLKPNGTLWVI-GSYHNIFRIGTMLQNLNFWILNDIVWRK 133
            + F   W     R+LKP+G+L+V  GS   +     +L    F ILN I+W K
Sbjct: 61  DEVFAEFW-----RILKPSGSLYVFCGS--RLAADTELLMRERFKILNHIIWAK 107


>gi|262039287|ref|ZP_06012604.1| nuclease [Leptotrichia goodfellowii F0264]
 gi|261746677|gb|EEY34199.1| nuclease [Leptotrichia goodfellowii F0264]
          Length = 400

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 39/65 (60%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+++HPTQKP  +L  IL   +K  D ILD F GSG++    ++  R+   IE ++ Y +
Sbjct: 322 GKRVHPTQKPIRMLGEILQDFSKENDNILDVFGGSGSTLIACEETGRNCYMIEYEEHYCN 381

Query: 260 IATKR 264
           +  KR
Sbjct: 382 VILKR 386


>gi|154500910|ref|ZP_02038948.1| hypothetical protein BACCAP_04595 [Bacteroides capillosus ATCC
           29799]
 gi|150270273|gb|EDM97607.1| hypothetical protein BACCAP_04595 [Bacteroides capillosus ATCC
           29799]
          Length = 264

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 34/63 (53%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +HPTQKP AL    + + T+PG+++ D   GS T+   A    R FI  E    Y   AT
Sbjct: 188 VHPTQKPVALCEYFIKTYTRPGEVVADICAGSATTAVAALNTGRRFICFETVPAYYAAAT 247

Query: 263 KRI 265
           +RI
Sbjct: 248 ERI 250


>gi|291535300|emb|CBL08412.1| DNA modification methylase [Roseburia intestinalis M50/1]
          Length = 264

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 36/63 (57%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +HPTQKP  L   ++ + T+PG+++ D   GSGT+   A  + R F+  E    +   AT
Sbjct: 188 VHPTQKPVELCEYLIKTYTRPGEVVADICAGSGTTAVAALNMGRRFVCFETAPAFYAPAT 247

Query: 263 KRI 265
           +RI
Sbjct: 248 ERI 250


>gi|127450|sp|P14827|MTEC_ENTCL RecName: Full=Modification methylase EcaI; Short=M.EcaI; AltName:
           Full=Adenine-specific methyltransferase EcaI
 gi|41315|emb|CAA34968.1| unnamed protein product [Enterobacter cloacae]
          Length = 452

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 2/89 (2%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +PT+K   ++  I+ +S+ PGD+++DPF GSG++   A  L+R +IGI+          K
Sbjct: 322 YPTEKNFNMMKLIVGASSNPGDLVIDPFCGSGSTLHAASLLQRKWIGIDESLFAAKTVMK 381

Query: 264 RIA-SVQPLGNIELTVLTGKRTEPRVAFN 291
           R A    P+G+   T L  K+TE  ++ N
Sbjct: 382 RFAIGRAPMGDYVNTSLN-KQTELPLSLN 409



 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 18/153 (11%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           F W D  +  N + V      K   LI+ DPPY   +       +H+  D +T++     
Sbjct: 74  FIWSDNSLALNRLMV----EGKKAKLIYLDPPYATGMGFSSRSNEHAYDDCLTEA----- 124

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKS 134
              AY  F R  L+  R +L  +GT++V   +  +  +  +L  +      +N I  RK 
Sbjct: 125 ---AYLEFMRRRLILMREILDDDGTIYVHIGHQMLGELKCLLDEIFGRERFINLITRRKC 181

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
           +   N     F N ++ ++  S   K K Y +N
Sbjct: 182 SSK-NSTKNNFANLNDYILCYS---KGKKYIWN 210


>gi|322378661|ref|ZP_08053095.1| putative type II cytosine specific methyltransferase [Helicobacter
           suis HS1]
 gi|322380031|ref|ZP_08054295.1| type II cytosine-specific methyltransferase [Helicobacter suis HS5]
 gi|321147547|gb|EFX42183.1| type II cytosine-specific methyltransferase [Helicobacter suis HS5]
 gi|321148914|gb|EFX43380.1| putative type II cytosine specific methyltransferase [Helicobacter
           suis HS1]
          Length = 391

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 107/246 (43%), Gaps = 19/246 (7%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++ G++   L K+    + L+F  PPY    N + Y    +  + +    +  +  +AY 
Sbjct: 143 LLVGDNRLTLNKIRQGQIQLVFTSPPY---YNARTYSSYKNYKEYLKQMQESLA--QAYR 197

Query: 83  AFTRAWLLACRR---VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN-PMP 138
                  +       ++K  G  +    Y   F   ++L    F+ +++I+W K    +P
Sbjct: 198 ILEEGRFIIINVSPVIVKRAGREFESIRYPIHFDFHSILVQSGFYFIDEIIWIKPEVCVP 257

Query: 139 N-----FRGRRFQNAHETLIWASPSPKAKGYTFNYDA-LKAANEDVQMRSDWLIPICSGS 192
           N      + +R  +     I  S     K   F  D  +K  N+  ++++D  +   S +
Sbjct: 258 NRIAGYLQTKRPLSYKPNCITESLLVYRKNTPFLLDRNMKRYNK--RLKNDGAVD--STN 313

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
                   +K HP   PE L++R+L   +  GD++ DPF GSGT   VA++++R  +  E
Sbjct: 314 CWFITPKSDKDHPAVFPEELVARVLRYYSFEGDVVCDPFAGSGTLARVAQRMKRIALLCE 373

Query: 253 MKQDYI 258
             ++++
Sbjct: 374 QNEEFV 379


>gi|124002990|ref|ZP_01687841.1| prophage LambdaSa04, DNA methylase [Microscilla marina ATCC 23134]
 gi|123991640|gb|EAY31048.1| prophage LambdaSa04, DNA methylase [Microscilla marina ATCC 23134]
          Length = 403

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IAT 262
           HPT KP  +++  L+ +T  GDI LD F GSGT+    ++ RR   G+E +  Y+  I T
Sbjct: 311 HPTPKPVRMIADALLDTTNEGDIALDCFLGSGTTLMATERTRRICYGVEYEPHYMQGILT 370

Query: 263 KRIASVQ 269
           + I   Q
Sbjct: 371 RFIHHCQ 377


>gi|308182437|ref|YP_003926564.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter pylori
           PeCan4]
 gi|308064622|gb|ADO06514.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter pylori
           PeCan4]
          Length = 252

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 96/247 (38%), Gaps = 28/247 (11%)

Query: 29  ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
           +SVLE       DL    PPYNL +  Q                + F +++ Y  + + W
Sbjct: 17  VSVLETFEKGFYDLCITSPPYNLSIEYQ--------------GSNDFRAYDDYLNWCKNW 62

Query: 89  LLACRRVLKPNGTLWV----IGSYHNIFRIGT----MLQNLNFWILNDIVWRKSN-PMPN 139
           L  C    K    L +      + H    +G     + +   +   N I+W +SN     
Sbjct: 63  LKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNESNISRRT 122

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
             G   Q +    I    +P      F  +  K   +   +  +  +   +G      + 
Sbjct: 123 AWGSWLQASAPYAI----APVELIVVFYKNEYKRQKQTSTISKEEFLLYTNGLWNFSGES 178

Query: 200 GEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E++++Y 
Sbjct: 179 KKRLKHPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEIEKEYC 238

Query: 259 DIATKRI 265
           +++ KRI
Sbjct: 239 ELSKKRI 245


>gi|283796833|ref|ZP_06345986.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. M62/1]
 gi|291075240|gb|EFE12604.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. M62/1]
          Length = 454

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 110/253 (43%), Gaps = 40/253 (15%)

Query: 40  VDLIFADPPYNLQ-------LNGQLYRPDHSLVDAV-TDSWDKFSSFEAYDAFTRAWLLA 91
            DL+  DPPYN+        L+  L    H  ++ +  D+ D  S +    +F  A   +
Sbjct: 196 ADLVVTDPPYNVNYGDKAEMLDEYLPAKGHRNINHIKNDNMDNQSFY----SFLLATYQS 251

Query: 92  CRRVLKPNGTLWVIG--SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNA 148
               ++    ++V    S  +IFR   +   L   +   ++W K+  +    GR+ +Q  
Sbjct: 252 AYEFMRAGAAIYVFHAESTGHIFRQAFLDAGLK--LAQCLIWEKNAFV---LGRQDYQWR 306

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANED----VQMRSDWLIPICSGSERLRNKDGEK-- 202
           HE  ++      A  +  +        ED      M+ + L+      E LR K+ ++  
Sbjct: 307 HEPCLYGWKEGAAHYFINDRTQDTVILEDDIDFSAMKKNELVAYL---EELRRKNRDQTS 363

Query: 203 -----------LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
                      +HPT KP AL+ + + +S+K G  +LD F GSG++   A++L R+   +
Sbjct: 364 VIYENKPTRNDIHPTMKPIALVGKFITNSSKSGWNVLDLFGGSGSTLMAAEQLGRTAFIM 423

Query: 252 EMKQDYIDIATKR 264
           E+ + + D+  KR
Sbjct: 424 ELDERFCDVIVKR 436


>gi|317010544|gb|ADU84291.1| type II DNA modification enzyme [Helicobacter pylori SouthAfrica7]
          Length = 252

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 95/246 (38%), Gaps = 28/246 (11%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
           SVLE       DL    PPYNL +  Q                + F +++ Y  + + WL
Sbjct: 18  SVLETFEKGFYDLCVTSPPYNLSIEYQ--------------GSNDFRAYDDYLNWCKNWL 63

Query: 90  LACRRVLKPNGTLWV----IGSYHNIFRIGT----MLQNLNFWILNDIVWRKSN-PMPNF 140
             C    K    L +      + H    +G     + +   +   N I+W +SN      
Sbjct: 64  KNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNESNISRRTA 123

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G   Q +    I    +P      F  +  K   +   M  +  +   +G      +  
Sbjct: 124 WGSWLQASAPYAI----APVELIIVFYKNEYKRKKQTSTMSREEFLLYTNGLWNFSGESK 179

Query: 201 EKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E++++Y +
Sbjct: 180 KRLKHPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEIEKEYCE 239

Query: 260 IATKRI 265
           ++ KRI
Sbjct: 240 LSKKRI 245


>gi|301029971|ref|ZP_07192957.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 196-1]
 gi|299877231|gb|EFI85442.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 196-1]
          Length = 172

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 81/216 (37%), Gaps = 53/216 (24%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY   L G   R   ++   V D W + +S E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPY---LVGFRDRSGRTIAGDVNDDWLQPASNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK N  +     ++ I R     +   F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKNALMVSFYGWNRIDRFMAAWKRAGFSVVGHLVFTKNYTSKSAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
              R + A+        +   P P   G+ ++                            
Sbjct: 108 VAYRHECAYILAKGRPALPQKPLPDVLGWKYS---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
               G + HPT+KP   L  ++ S T P  I+LDP 
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPL 171


>gi|294783251|ref|ZP_06748575.1| DNA (cytosine-5-)-methyltransferase [Fusobacterium sp. 1_1_41FAA]
 gi|294480129|gb|EFG27906.1| DNA (cytosine-5-)-methyltransferase [Fusobacterium sp. 1_1_41FAA]
          Length = 438

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/258 (21%), Positives = 111/258 (43%), Gaps = 36/258 (13%)

Query: 38  KSVDLIFADPPYNLQL---NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           +++DL+  DPPYN+     NG   + D+              S E + +F   +      
Sbjct: 182 ETMDLMVTDPPYNVNYEAKNGNKIKNDNM-------------SSENFYSFLLEFYKNSFE 228

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
           V++     ++  +          L+   F I   ++W K+  + + +   ++  HE  ++
Sbjct: 229 VMRTGAAYYIFHADSETKAFRGALEEAGFKISQCLIWVKNQFVLSRQDYNWR--HEPCLY 286

Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDW----LIPICSGSERLRNKDG---------E 201
                 A  +  ++       +D++   ++    LI I    + L+ ++           
Sbjct: 287 GWKEGAAHYFIKDFTQDTVIEKDLKSIENYSKKELINILK--QLLKEQESIIRENKPQRN 344

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
            +HPT KP  L++R++ +S+K    ILD F GSG++   A++L R    +E    Y D+ 
Sbjct: 345 DVHPTMKPIKLIARLIHNSSKKEWNILDLFGGSGSTLIAAEQLNRKSFLMEYDPKYADVI 404

Query: 262 TKRIASVQPLGNIELTVL 279
            KR    + LG +++T+L
Sbjct: 405 VKR---YRTLGKLDITLL 419


>gi|284165403|ref|YP_003403682.1| DNA methylase N-4/N-6 domain protein [Haloterrigena turkmenica DSM
           5511]
 gi|284015058|gb|ADB61009.1| DNA methylase N-4/N-6 domain protein [Haloterrigena turkmenica DSM
           5511]
          Length = 370

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 121/287 (42%), Gaps = 39/287 (13%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNL-QLNGQLY-RPDHSLVDAVTDSWDK 74
            E   ++  G+S   L  +   SV+L+   PPY + ++   L+ R D ++ DA+ ++ D 
Sbjct: 1   METTHRVFVGDSRD-LAAIDDDSVELVVTSPPYPMIEMWDDLFTRLDPAVGDAL-EAGDG 58

Query: 75  FSSFEAYDA-FTRAWLLACRRVLKPNGTLWV-IGS-----------YHNIFRIGTMLQNL 121
             +F+A  A   R W     RVL   G   + +G            Y N  R+    ++ 
Sbjct: 59  RRAFDAMHAQLDRVWD-ELERVLVDGGIACINVGDATRSVDDSFRVYANHARVLEAFESR 117

Query: 122 NFWILNDIVWRK-SNPMPNFRGRRF--QNA-----HETLIWASPSPKAKGYTFNYDALKA 173
            F  L DI+WRK +N    F G      NA     HE ++      +++ +    D    
Sbjct: 118 GFDPLPDILWRKPANSAAKFMGSGMIPPNAYVTLEHEYVLVFRKGGESRSFEPGADRRYE 177

Query: 174 ANEDVQMRSDWLIPICS---------GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
           A    + R+ W   + +           E    +D    +P + P     R++   +  G
Sbjct: 178 AAYFWEERNRWFSDVWTDVRGELQALSDEHDDLRDRSAAYPLEIP----YRLICMYSAYG 233

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           D +LDPF+G+GT+   A    R+ +G E++  ++++   R+  V  L
Sbjct: 234 DTVLDPFWGTGTTTLAAMYAGRNSVGSELESSFLEVFDDRLGDVPAL 280


>gi|197294754|ref|YP_001799295.1| Putative methylase [Candidatus Phytoplasma australiense]
 gi|171854081|emb|CAM12056.1| Putative methylase [Candidatus Phytoplasma australiense]
          Length = 191

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 45/69 (65%), Gaps = 4/69 (5%)

Query: 203 LHPTQKPEALLSRILVSS---TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           +HPTQKP+ L ++++ S+    + G++++ PF GSG+   VAKK   ++IGIE+  DY+ 
Sbjct: 124 IHPTQKPQMLTNKLIDSAIMENQKGNVLI-PFAGSGSECLVAKKKNLNYIGIEINPDYVM 182

Query: 260 IATKRIASV 268
           +  + +  +
Sbjct: 183 LINEALKKI 191


>gi|17545563|ref|NP_518965.1| hypothetical protein RSc0844 [Ralstonia solanacearum GMI1000]
 gi|17427856|emb|CAD14546.1| putative dna modification methylase protein [Ralstonia solanacearum
           GMI1000]
          Length = 441

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           R + K G  + HP   P AL   ++ + +  GDI+ +PF GSGT+   A++  R    +E
Sbjct: 336 RHKGKIGRDIDHPAVFPVALPEFVIEAYSDAGDIVFEPFGGSGTTMLAAQRTGRLCHSVE 395

Query: 253 MKQDYIDIATKRIASVQPLGNIEL 276
           +  +Y+D+A KR     P   + L
Sbjct: 396 IAPEYVDVAIKRFQQNYPEAPVTL 419


>gi|332673104|gb|AEE69921.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori 83]
          Length = 252

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 96/247 (38%), Gaps = 28/247 (11%)

Query: 29  ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
           +SVLE       DL    PPYNL +  Q                + F +++ Y  + + W
Sbjct: 17  VSVLETFEKGFYDLCITSPPYNLSIEYQ--------------GSNDFRAYDDYLNWCKNW 62

Query: 89  LLACRRVLKPNGTLWV----IGSYHNIFRIGT----MLQNLNFWILNDIVWRKSN-PMPN 139
           L  C    K    L +      + H    +G     + +   +   N I+W +SN     
Sbjct: 63  LKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADMIAIAKECGWKYQNTIIWNESNISRRT 122

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
             G   Q +    I    +P      F  +  K   +   +  +  +   +G      + 
Sbjct: 123 AWGSWLQASAPYAI----APVELIVVFYKNEYKRQKQTSTISKEEFLLYTNGLWSFSGES 178

Query: 200 GEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E++++Y 
Sbjct: 179 KKRLKHPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEIEKEYC 238

Query: 259 DIATKRI 265
           +++ KRI
Sbjct: 239 ELSKKRI 245


>gi|295681318|ref|YP_003609892.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. CCGE1002]
 gi|295441213|gb|ADG20381.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. CCGE1002]
          Length = 439

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 98/245 (40%), Gaps = 37/245 (15%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL--- 96
            DLI  DPPYN+   G+  +        +T   D   + E    F+R  L A + +    
Sbjct: 216 ADLIITDPPYNVAYVGKTDK-------RMTIQNDAMQAGE----FSRFLLTAHQTMFAAA 264

Query: 97  KPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA- 155
           K    ++V  +          L +  F +    VW K + +   +   +Q  HE +++  
Sbjct: 265 KGGAGIYVFHADTEGLAFRGALLDAGFKLAQCCVWVKQSLVLGRQDYHWQ--HEPVLYGW 322

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
            P+ K + Y            D    + W     S     RN     LHPT KP A++  
Sbjct: 323 KPTGKHRWYA-----------DRSQSTVW-----SFDRPARND----LHPTMKPVAVVEY 362

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
            + +S++ GD++LD F GSGT+    +K  R    +E+   Y D+   R  +   L    
Sbjct: 363 PIQNSSRDGDLVLDTFGGSGTTLIACEKCGRRARLLELDPVYCDVIVARWQAYTGLSATH 422

Query: 276 LTVLT 280
            T+ T
Sbjct: 423 ETIGT 427


>gi|118576338|ref|YP_876081.1| DNA modification methylase [Cenarchaeum symbiosum A]
 gi|118194859|gb|ABK77777.1| DNA modification methylase [Cenarchaeum symbiosum A]
          Length = 236

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 94/229 (41%), Gaps = 29/229 (12%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           N +++L+++P  SV   F DP Y   L+   Y  +      +    ++ S+        R
Sbjct: 36  NGLTLLDRMPDCSVQAAFFDPQYRGILDRMKYGNEGVSRGRLRSGMEQMSA-----DTVR 90

Query: 87  AWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
            +L    RVL P+GTL++ I  +H +  I   ++      ++ I W K      +R RR 
Sbjct: 91  EFLGEMGRVLVPSGTLFLWIDKFHLVDGISGWIEGTCLNAVDMITWDKQRMGMGYRTRRC 150

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
            + H  ++  SP  +AK    ++       E V+ R+                     H 
Sbjct: 151 -SEHMVVLQKSPK-RAKNVWRDHGIPDVWPEKVEGRN---------------------HT 187

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
             KP  L +R++   T     +LDP  G  +     K+  R+FIG +++
Sbjct: 188 HAKPVRLQARLIECVTTGRGAVLDPAAGGYSVLESCKRTGRNFIGCDLR 236


>gi|150391731|ref|YP_001321780.1| DNA methylase N-4/N-6 domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149951593|gb|ABR50121.1| DNA methylase N-4/N-6 domain protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 411

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 99/237 (41%), Gaps = 40/237 (16%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYR-PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
           +  K  +L+  DPPYN+   G   +  + +L D+V            +  F  A      
Sbjct: 185 MDGKLANLVVTDPPYNVNYEGSAGKIKNDNLGDSV------------FYEFLLAAFTNTE 232

Query: 94  RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNAHETL 152
             +  + +++V  +               F++    +W+K + +    GR  +Q  HE +
Sbjct: 233 AAMTQDSSIYVFHADTEGLNFRKAFAEAGFYLSGTCIWKKQSLV---LGRSPYQWQHEPV 289

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI--PICSGSERLRNKDGEKLHPTQKPE 210
           ++     K KG   N+ A      D +  + W    P  +GS           HPT KP 
Sbjct: 290 LFGW---KKKG-KHNWYA------DRKQTTIWEFEKPKKNGS-----------HPTMKPV 328

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           AL++  +++S+    I+LDPF GSG++     + +R    IE+ + + D+  +R  S
Sbjct: 329 ALVAHPILNSSLSNCIVLDPFGGSGSTLIACDQTQRICHTIELDEKFCDVIVERFIS 385


>gi|320537594|ref|ZP_08037531.1| DNA (cytosine-5-)-methyltransferase [Treponema phagedenis F0421]
 gi|320145548|gb|EFW37227.1| DNA (cytosine-5-)-methyltransferase [Treponema phagedenis F0421]
          Length = 384

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 41/67 (61%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +PT+K  +LL  ++ SS+    II D F GSGT+   A++L R +IGI+  ++ I I  +
Sbjct: 292 YPTEKNLSLLKHLIESSSNEDSIIFDFFCGSGTTLVAAQELERKWIGIDKSEEAIKITKQ 351

Query: 264 RIASVQP 270
           +++   P
Sbjct: 352 KLSQCSP 358


>gi|257486160|ref|ZP_05640201.1| DNA methylase N-4/N-6 [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331010490|gb|EGH90546.1| DNA methylase N-4/N-6 [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 360

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 79/366 (21%), Positives = 129/366 (35%), Gaps = 126/366 (34%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           +I+ G+ I V+  LP +SV      PPY    +  + GQ+          + ++  +F +
Sbjct: 6   QILLGDCIDVMRTLPDESVHTCVTSPPYYGLRDYGVEGQI---------GLEETPAEFIA 56

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWV--------------------------------- 104
               D F        RRVL+ +GT+WV                                 
Sbjct: 57  -RLVDVFRE-----VRRVLRADGTIWVNMGDSYATGGRGGGGSYMAERGDAAWKGKGSAT 110

Query: 105 ------IGSYHN-----IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
                  G  H       +R+   LQ+  +++  DI+W K NPMP     R   AHE L 
Sbjct: 111 GWRSAPAGFKHKDLMGMPWRLAFALQDDGWYLRQDIIWHKPNPMPESTRDRCTKAHEYLF 170

Query: 154 WASPSPKAKGYTFNYDALK-----------AANEDVQMRSDWLIPICSGSERL--RNKDG 200
             S   K++ Y ++ DA+K           + N D Q  SD +    +G  +     +D 
Sbjct: 171 LLS---KSRRYFYDQDAIKEPVAASSIARLSQNVDDQAGSDRVPGKTNGPMKAVRSRRDS 227

Query: 201 EKLHPTQKPEALLSRILVS---------------------------------STKPGDII 227
            K   +++ +A+  +   +                                 +T P D+I
Sbjct: 228 FKREDSKREQAIPGQAFGTHRPDRDDSDYPLDVRNKRSVWSVPTVGYKGAHFATFPPDLI 287

Query: 228 --------------LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
                         LDPF G+GT+  V+ +  R  I  E+   Y  +A  RI S    G 
Sbjct: 288 RPCILASAPRGGVVLDPFGGAGTTSLVSMQEGRRSIICELNPGYAALARARIDSAWLDGA 347

Query: 274 IELTVL 279
            ++ V 
Sbjct: 348 AQMDVF 353


>gi|163756940|ref|ZP_02164047.1| DNA methylase N-4/N-6 domain protein [Kordia algicida OT-1]
 gi|161323059|gb|EDP94401.1| DNA methylase N-4/N-6 domain protein [Kordia algicida OT-1]
          Length = 639

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           L N+ G      +KPE LL R++   T  GD +LD F GSG++   A K+ R +IG+E+
Sbjct: 401 LHNEGGVDFRKGKKPEKLLQRLIELVTDEGDTVLDIFGGSGSTFGTAHKMNRKWIGVEI 459


>gi|188527069|ref|YP_001909756.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter pylori
           Shi470]
 gi|188143309|gb|ACD47726.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter pylori
           Shi470]
          Length = 252

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 96/247 (38%), Gaps = 28/247 (11%)

Query: 29  ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
           +SVLE       DL    PPYNL +  Q                + F +++ Y  + + W
Sbjct: 17  VSVLETFEKGFYDLCITSPPYNLSVEYQ--------------GSNDFRAYDDYLNWCKNW 62

Query: 89  LLACRRVLKPNGTLWV----IGSYHNIFRIGT----MLQNLNFWILNDIVWRKSN-PMPN 139
           L  C    K    L +      + H    +G     + +   +   N I+W +SN     
Sbjct: 63  LKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNESNISRRT 122

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
             G   Q +    I    +P      F  +  K   +   +  +  +   +G      + 
Sbjct: 123 AWGSWLQASAPYAI----APVELIVVFYKNEYKRQKQTSTISKEEFLLYTNGLWNFSGES 178

Query: 200 GEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E++++Y 
Sbjct: 179 KKRLKHPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEIEKEYC 238

Query: 259 DIATKRI 265
           +++ KRI
Sbjct: 239 ELSKKRI 245


>gi|317481266|ref|ZP_07940337.1| DNA methylase [Bacteroides sp. 4_1_36]
 gi|316902599|gb|EFV24482.1| DNA methylase [Bacteroides sp. 4_1_36]
          Length = 264

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 95/268 (35%), Gaps = 59/268 (22%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           + K + + V+  LP  S+DL+  DPP+                      WDK        
Sbjct: 12  LYKADCLEVMPLLPESSIDLVLCDPPFG----------------TTASQWDKII------ 49

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGS--YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
            F   W    RRV K N    + GS  + ++ R   + +    W     VW KS    NF
Sbjct: 50  PFPEMWK-EIRRVRKENAPTALFGSEPFSSLLRYSNLDEFKYDW-----VWEKSK-ASNF 102

Query: 141 RGRRFQ--NAHETLIWASPSPKAKGYTFNYDALKAAN---EDVQMRSDWL---------- 185
              + Q   AHE +     S   KG T  Y  ++         +  S+W           
Sbjct: 103 LLAKKQPLKAHELI-----SVFCKGKTPYYPIMEEGEPYGNRTKRGSNWTGINNVPNPAF 157

Query: 186 --------IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                    P      +    +G+ +H  QKP ALL  ++ + TK GD +LD   GS ++
Sbjct: 158 RNENRGIRYPRSVKYFKTAESEGKTIHVNQKPIALLQYLIKTYTKEGDTVLDFASGSMST 217

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRI 265
                   R  I IE  + Y      R+
Sbjct: 218 AIACIYTNRKCICIEKDEKYFSQGEGRV 245


>gi|224437467|ref|ZP_03658429.1| DNA methylase N-4/N-6 domain protein [Helicobacter cinaedi CCUG
           18818]
          Length = 169

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP   P  L  R +   +  GD++ DPF GSGT+   +    R FIGIE+ ++Y +++ K
Sbjct: 94  HPAPFPRELPKRCIKLFSYVGDVVFDPFCGSGTTMIESYLNNRQFIGIELDREYCELSKK 153

Query: 264 RI 265
           R 
Sbjct: 154 RF 155


>gi|209524026|ref|ZP_03272577.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
 gi|209495401|gb|EDZ95705.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
          Length = 374

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 13/122 (10%)

Query: 159 PKAKGYTFNYDALK--AANEDVQMRSDWLIP----------ICSGSERLRNKDGEKLHPT 206
           P  K Y F+ D L    A E  +MRS +  P              +ER++  +G+ +H  
Sbjct: 247 PDGKPY-FSVDGLHPLTAEEWGKMRSQFRCPHGFTNVWQRSALRNNERIKTPNGKAVHLN 305

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           QKP  L+  I+ +S++  D+I +PF G  ++   A  L R     E+ + Y     KR +
Sbjct: 306 QKPLDLMQLIIEASSQERDVIWEPFGGLFSASLAANILNRKAFACEIDETYFYYGVKRFS 365

Query: 267 SV 268
            V
Sbjct: 366 QV 367


>gi|331090243|ref|ZP_08339131.1| hypothetical protein HMPREF1025_02714 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330402189|gb|EGG81761.1| hypothetical protein HMPREF1025_02714 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 421

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 42/68 (61%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HPT KP AL++  + +S+  G ++L+PF GSG++    ++  R   G+E+++ ++D+ 
Sbjct: 321 KDHPTMKPIALMAYPVQNSSMMGCVVLNPFLGSGSTLMACEQTGRICYGVELEEKFVDVI 380

Query: 262 TKRIASVQ 269
             R   ++
Sbjct: 381 VNRYMEMK 388


>gi|22001102|gb|AAM88306.1|AF479828_5 unknown [Escherichia coli]
          Length = 188

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 36/56 (64%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R   G+E++ +  +
Sbjct: 125 HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALGRLATGVELETERFE 180


>gi|313143920|ref|ZP_07806113.1| LOW QUALITY PROTEIN: adenine specific DNA methyltransferase
           [Helicobacter cinaedi CCUG 18818]
 gi|313128951|gb|EFR46568.1| LOW QUALITY PROTEIN: adenine specific DNA methyltransferase
           [Helicobacter cinaedi CCUG 18818]
          Length = 191

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP   P  L  R +   +  GD++ DPF GSGT+   +    R FIGIE+ ++Y +++ K
Sbjct: 116 HPAPFPRELPKRCIKLFSYVGDVVFDPFCGSGTTMIESYLNNRQFIGIELDREYCELSKK 175

Query: 264 RI 265
           R 
Sbjct: 176 RF 177


>gi|323467534|gb|ADX71220.1| DNA methyltransferase [Lactobacillus helveticus H10]
          Length = 341

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           E +R   G+  HP +KP  LL   + +S+   DI+LD F GSG++   A  L R  I +E
Sbjct: 262 ETVRQYRGK--HPAEKPIDLLENAIKASSYVNDIVLDTFSGSGSTAEAALSLGRKSISME 319

Query: 253 MKQDYIDIATKRIASVQPLGNIELTV 278
           ++  ++  +  R+ S Q    IEL V
Sbjct: 320 IEDKWVQASVDRLKSTQ----IELKV 341



 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 24/135 (17%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQL-----YRPDHSLVDAVTDSWDKFSS 77
           I++G+S+ +++K+P+ S+ LI  DPPY+      +     ++ D   +D +         
Sbjct: 29  IVEGDSLELMKKIPSHSISLILTDPPYHSTNKKNITGDTKFKKDEDFLDWM--------- 79

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
               + F + W    +R+LK NG+++   S    +++       +F IL+ I W K N  
Sbjct: 80  ----EQFAKEW----KRILKFNGSIYCFCSSQMEYQLINRFSK-DFNILSTITWTKPNK- 129

Query: 138 PNFRGRRFQNAHETL 152
           P F G R +   E L
Sbjct: 130 PGFDGWRKKMKKENL 144


>gi|300741960|ref|ZP_07071981.1| site-specific DNA-methyltransferase (adenine-specific) [Rothia
           dentocariosa M567]
 gi|300381145|gb|EFJ77707.1| site-specific DNA-methyltransferase (adenine-specific) [Rothia
           dentocariosa M567]
          Length = 675

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 40/62 (64%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           + TQKP  LL RI+ +S+  GD++ D F GSGT+ AVA++L R ++  ++ +    I  K
Sbjct: 333 YGTQKPGRLLERIIQASSDEGDLVADFFVGSGTTAAVAERLGRRWVVTDLGKPSTMIVRK 392

Query: 264 RI 265
           R+
Sbjct: 393 RL 394


>gi|207091933|ref|ZP_03239720.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 252

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 95/247 (38%), Gaps = 28/247 (11%)

Query: 29  ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
           +SVLE       DL    PPYNL +  Q                D F +++ Y  + + W
Sbjct: 17  VSVLETFEKGFYDLCITSPPYNLSIEYQ--------------GSDDFRAYDDYLNWCKNW 62

Query: 89  LLACRRVLKPNGTLWV----IGSYHNIFRIGT----MLQNLNFWILNDIVWRKSN-PMPN 139
           L  C    K    L +      + H    +G     + +   +   N I+W +SN     
Sbjct: 63  LKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNESNISRRT 122

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
             G   Q +    I    +P      F  +  K   +   +  +  +   +G      + 
Sbjct: 123 AWGSWLQASAPYAI----APVELIVVFYKNEYKRQKQTSTISKEEFLLYTNGLWSFSGES 178

Query: 200 GEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            ++L HP   P     R +   +   D I DPF GSGT+   A  L R  +G+E++++Y 
Sbjct: 179 KKRLKHPAPFPRESPKRCIQLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEIEKEYC 238

Query: 259 DIATKRI 265
           +++ KRI
Sbjct: 239 ELSKKRI 245


>gi|147677858|ref|YP_001212073.1| adenine specific DNA methylase Mod [Pelotomaculum thermopropionicum
           SI]
 gi|146273955|dbj|BAF59704.1| adenine specific DNA methylase Mod [Pelotomaculum thermopropionicum
           SI]
          Length = 697

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 38/64 (59%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           + TQKPE LL RI+ +S+  G ++ D F GSG + AVA KL R FI  ++  + I     
Sbjct: 341 YTTQKPEVLLERIIKASSNEGMLVADFFGGSGVTAAVANKLGRRFIHCDIGINSIQTTRD 400

Query: 264 RIAS 267
           R+ +
Sbjct: 401 RLIA 404


>gi|117926185|ref|YP_866802.1| nuclease [Magnetococcus sp. MC-1]
 gi|117609941|gb|ABK45396.1| ParB domain protein nuclease [Magnetococcus sp. MC-1]
          Length = 444

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 107/282 (37%), Gaps = 38/282 (13%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLY------RPDHSLVDAVTDS----WDKFS 76
           N   V+  +  +   L   DPPY +  +G  +      R   SL    +DS    WD  S
Sbjct: 185 NPDDVIRLMNGERAILFATDPPYLVDYDGTNHPGSKETRKRESLNKDWSDSYGVTWDDSS 244

Query: 77  SF-EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
              E Y+ F RA   A    ++PN   +   +      +  + + +  +    I+W K  
Sbjct: 245 QGPELYEGFIRA---AIDHAIEPNAAWYCWHASKRQAMLEAVWEKMGAFQHQQIIWNKEK 301

Query: 136 PMPNFRGRRFQNAHETLIW--ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
            +       +++    + W   +  PKA G  F             + + W I   SG E
Sbjct: 302 GVLTRSKYLWKHEPCLMGWIKGNMPPKADGAEF-------------LSTVWDIQGLSGDE 348

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           R         HPT KP    +  +    + G +  +PF GSG+     +   R    +E+
Sbjct: 349 R-------PDHPTPKPLDCFAIPMRQHVERGGLCYEPFSGSGSQIMAGEMTGRRVHAMEI 401

Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
              Y+D+A KR   ++  G +     +G ++   VA +  +E
Sbjct: 402 SPVYVDVAVKRF--IRATGKVVYLDGSGGKSFEDVAADRGIE 441


>gi|15828868|ref|NP_326228.1| type III restriction-modification system: methylase [Mycoplasma
           pulmonis UAB CTIP]
 gi|14089811|emb|CAC13570.1| TYPE III RESTRICTION-MODIFICATION SYSTEM: METHYLASE [Mycoplasma
           pulmonis]
          Length = 565

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 41/62 (66%), Gaps = 2/62 (3%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI-DIATKRIA 266
           KPE+L+  ++  +T   D++LD   GSGT+ AVA K+ R +IGIE + DYI +I  +R+ 
Sbjct: 448 KPESLIHYLVNMNTNKNDLVLDFNLGSGTTTAVAHKMGRKYIGIE-QMDYIQNITIERMK 506

Query: 267 SV 268
            V
Sbjct: 507 KV 508


>gi|332289951|ref|YP_004420803.1| DNA methylase [Gallibacterium anatis UMN179]
 gi|330432847|gb|AEC17906.1| DNA methylase [Gallibacterium anatis UMN179]
          Length = 258

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 5/97 (5%)

Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
           N D+ + S W+I       + +N       P Q P  L+ R     T+ GD +LD F GS
Sbjct: 7   NSDLNVDSLWIIDKRDKRGKHKNVYHGNFIP-QIPYQLIKR----YTEEGDTVLDLFMGS 61

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           GT+    + L R+FIG ++ Q  ID    +++S  P+
Sbjct: 62  GTTLYECENLNRNFIGFDINQSIIDYVFSQMSSATPI 98


>gi|115374287|ref|ZP_01461572.1| DNA methylase [Stigmatella aurantiaca DW4/3-1]
 gi|310818183|ref|YP_003950541.1| modification methylase [Stigmatella aurantiaca DW4/3-1]
 gi|115368708|gb|EAU67658.1| DNA methylase [Stigmatella aurantiaca DW4/3-1]
 gi|309391255|gb|ADO68714.1| Modification methylase [Stigmatella aurantiaca DW4/3-1]
          Length = 452

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 36/70 (51%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           R+   +  HPT K  AL+  +    T PG  +LD F GSG++G  A      FIG+E   
Sbjct: 364 RSGAAQNHHPTVKSIALMRWLCRLITPPGGAVLDLFAGSGSTGVAALAEGFEFIGVERDP 423

Query: 256 DYIDIATKRI 265
           DY  IA  RI
Sbjct: 424 DYAAIACARI 433


>gi|209963409|ref|YP_002296324.1| DNA methylase, putative [Rhodospirillum centenum SW]
 gi|209956875|gb|ACI97511.1| DNA methylase, putative [Rhodospirillum centenum SW]
          Length = 412

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 39/68 (57%)

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
            +D    H TQKP  ++ R +V+++  GD++ +PF GSGT+   A+ + R    +E+   
Sbjct: 320 GEDAATPHGTQKPVEVMRRPIVNNSARGDVLYEPFCGSGTTLIAAETVGRVCYALELDPT 379

Query: 257 YIDIATKR 264
           Y D+  +R
Sbjct: 380 YCDVIVRR 387


>gi|117926035|ref|YP_866652.1| nuclease [Magnetococcus sp. MC-1]
 gi|117609791|gb|ABK45246.1| ParB domain protein nuclease [Magnetococcus sp. MC-1]
          Length = 452

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 108/287 (37%), Gaps = 46/287 (16%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLY------RPDHSLVDAVTDS----WDKFS 76
           N   V+  +  +   L   DPPY +  +G  +      R   SL    +DS    WD  S
Sbjct: 189 NPEDVIRLMNGERAILFATDPPYLVDYDGTNHPGSKESRKRESLNKDWSDSYGVTWDDSS 248

Query: 77  SF-EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
              E Y+ F RA   A    ++PN   +   +      +  + + +  +    I+W K  
Sbjct: 249 QGPELYEGFIRA---AIDHAIEPNAAWYCWHASKRQAMLEAVWEKMGAFQHQQIIWNKEK 305

Query: 136 PMPNFRGRRFQNAHETL----IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
            +      ++   HE      I  +  PK  G  F             + + W I   SG
Sbjct: 306 GV--LTRSKYLWKHEPCLMGWIKGNMPPKINGAEF-------------LSTVWDIRGLSG 350

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
            ER         HPT KP    +  +    + G +  +PF GSG+     +   R    +
Sbjct: 351 EERPD-------HPTPKPLDCFAIPMRQHVERGGLCYEPFSGSGSQIMAGEMTGRRVHAM 403

Query: 252 EMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGL 298
           E+   Y+D+A KR   +Q  G I     +G ++   VA    +ERG+
Sbjct: 404 EISPVYVDVAVKRF--IQATGKIVYLDGSGGKSFEDVA----LERGI 444


>gi|320175402|gb|EFW50504.1| putative DNA methylase [Shigella dysenteriae CDC 74-1112]
          Length = 349

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 34/51 (66%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           HP +KP  +L +I+ +S++PGD + D F GSG++   A  L R  IG+E++
Sbjct: 283 HPCEKPAEMLQQIINASSRPGDQVADFFMGSGSTVKAALALGRRAIGVELE 333



 Score = 45.4 bits (106), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 23/116 (19%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  +  LP  SVDLI  DPPY                    + WD  + ++  
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPY---------------FKVKPEGWD--NQWKGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           D + + WL  C     RVLKP G+L++   +     I  M++   F +LN I+W K
Sbjct: 54  DDYLK-WLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAK 107


>gi|108756876|ref|YP_629467.1| modification methylase [Myxococcus xanthus DK 1622]
 gi|108460756|gb|ABF85941.1| modification methylase [Myxococcus xanthus DK 1622]
          Length = 423

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G   HPT K  AL+  +    T PG  +LD F GSG++G  A      FIGIE +  Y +
Sbjct: 345 GRNHHPTVKSLALMRWLCRLITPPGGTVLDLFAGSGSTGVAALAEGFDFIGIEREPAYAE 404

Query: 260 IATKRIA-SVQPL 271
           IA  R+  +++PL
Sbjct: 405 IAHARLCHAIEPL 417


>gi|317012105|gb|ADU82713.1| putative adenine-specific DNA-methyltransferase [Helicobacter
           pylori Lithuania75]
          Length = 252

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 94/246 (38%), Gaps = 28/246 (11%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
           SVLE       DL    PPYNL +  Q                + F +++ Y  + + WL
Sbjct: 18  SVLETFEKGFYDLCVTSPPYNLSIEYQ--------------GSNDFRAYDDYLNWCKNWL 63

Query: 90  LACRRVLKPNGTLWV----IGSYHNIFRIGT----MLQNLNFWILNDIVWRKSN-PMPNF 140
             C    K    L +      + H    +G     + +   +   N I+W +SN      
Sbjct: 64  KNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNESNISRRTA 123

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G   Q +    I    +P      F  +  K   +   M  +  +   +G      +  
Sbjct: 124 WGSWLQASAPYAI----APVELIVVFYKNEYKRKKQTSTMSKEEFLLYTNGLWNFSGESK 179

Query: 201 EKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           + L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E++++Y +
Sbjct: 180 KHLKHPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEIEKEYCE 239

Query: 260 IATKRI 265
           ++ KRI
Sbjct: 240 LSKKRI 245


>gi|295100461|emb|CBK98006.1| DNA modification methylase [Faecalibacterium prausnitzii L2-6]
          Length = 263

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 36/67 (53%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +HPTQKP  L    + + T+PG+++ D   GSGT+   A    R FI  E    Y   A+
Sbjct: 187 IHPTQKPVELCEYFIKTYTRPGEVVADICAGSGTTAVAALNTGRRFICFETVPAYYAAAS 246

Query: 263 KRIASVQ 269
           +RI + +
Sbjct: 247 ERIRAAR 253


>gi|330895400|gb|EGH27738.1| type III restriction-modification system methyltransferase,
           putative [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 402

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 5/81 (6%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK-QDYIDIATKR 264
           T KPE LL RI+  ++ PG++++D F GSGT+ AVA K+ R ++  E   Q  +D    R
Sbjct: 316 TPKPELLLERIIHIASNPGELVVDIFGGSGTTAAVAHKMGRRWVVAERNAQTVLDFMVPR 375

Query: 265 IASV----QPLGNIELTVLTG 281
           +  V     P G  + T  +G
Sbjct: 376 LTHVVNGTDPGGVTDTTSWSG 396



 Score = 36.2 bits (82), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 73/173 (42%), Gaps = 32/173 (18%)

Query: 26  GNSISVLEKLPAKS------VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           G+ + VLE L  ++      + L++ DPP+N Q++ + YR      D +  S        
Sbjct: 57  GDGLDVLEALRQRTSVLDGGIRLVYIDPPFNTQVDFRQYR------DTMNRS-------- 102

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPM 137
            + +  R  L+A R +L  + ++WV      + R   ++  +      +  ++W+K    
Sbjct: 103 MWLSMMRDRLIAIRPLLANDASIWVHLDDSEVHRARAVMDEVFGETAFVTSVIWQKK--- 159

Query: 138 PNFRGRR--FQNAHET-LIWASPSPKAKGYTFNY---DALKAANEDVQMRSDW 184
              R  R  F + H+T L++A   PK    T N    D     N+D   R  W
Sbjct: 160 -TTRDSRAAFSSNHDTILVYAPSGPKKWKTTRNLLVKDNAHLLNKDDDPRGPW 211


>gi|192359023|ref|YP_001984102.1| putative DNA methylase [Cellvibrio japonicus Ueda107]
 gi|190685188|gb|ACE82866.1| possible DNA methylase [Cellvibrio japonicus Ueda107]
          Length = 1004

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 41/66 (62%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K++  Q    L+ R ++ +T PGD++LDP  GSGT+  VA++  R +I I+  +  + 
Sbjct: 478 GDKIYVVQTANKLIERCVLMTTDPGDLVLDPTCGSGTTAYVAEQWGRRWITIDTSRVALA 537

Query: 260 IATKRI 265
           +A  RI
Sbjct: 538 LARARI 543


>gi|187730072|ref|YP_001880669.1| DNA methylase [Shigella boydii CDC 3083-94]
 gi|187427064|gb|ACD06338.1| DNA methylase [Shigella boydii CDC 3083-94]
          Length = 349

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 34/51 (66%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           HP +KP  +L +I+ +S++PGD + D F GSG++   A  L R  IG+E++
Sbjct: 283 HPCEKPAEMLQQIINASSRPGDQVADFFMGSGSTVKAALALGRRAIGVELE 333



 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 23/116 (19%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  +  LP  SVDLI  DPPY                    + WD  + ++  
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPY---------------FKVKPEGWD--NQWKGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           D + + WL  C     RVLKP G+L++   +     I  M++   F +LN I+W K
Sbjct: 54  DDYLK-WLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAK 107


>gi|284097643|ref|ZP_06385677.1| DNA methylase N-4/N-6 domain protein [Candidatus Poribacteria sp.
           WGA-A3]
 gi|283830846|gb|EFC34922.1| DNA methylase N-4/N-6 domain protein [Candidatus Poribacteria sp.
           WGA-A3]
          Length = 142

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 34/65 (52%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP   P  L  R +   +  GD +LDPF GSGT+   A   +R  IGIE+ +DY  +A  
Sbjct: 59  HPAPFPIELPRRCIKLFSYVGDTVLDPFMGSGTTLVAACANKRYGIGIEVDRDYCKLAKD 118

Query: 264 RIASV 268
           RI   
Sbjct: 119 RIGQA 123


>gi|254180442|ref|ZP_04887040.1| DNA methylase [Burkholderia pseudomallei 1655]
 gi|184210981|gb|EDU08024.1| DNA methylase [Burkholderia pseudomallei 1655]
          Length = 303

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 77/193 (39%), Gaps = 30/193 (15%)

Query: 84  FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
           +  AWL  CRR LKP G L     +  +  +  ++Q     +    VW K+      R  
Sbjct: 132 WCHAWLSECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLTLRGVAVWDKTLGRMRLRRG 191

Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
            F    E ++WAS     +G     D         ++      P+             K 
Sbjct: 192 GFAQQAEFVVWAS-----RGAMRGCDVYLPGVFPCRL------PL------------PKQ 228

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           H T+KP   ++R +V     G ++ D F GSGT  A A++    ++G E  Q Y  I++ 
Sbjct: 229 HVTEKPLD-IAREVVRLMPAGVVVCDLFAGSGTFLAAAREAGLHWVGSETNQAYHAISSA 287

Query: 264 RI------ASVQP 270
           R+      + VQP
Sbjct: 288 RLDATTDDSGVQP 300


>gi|126173814|ref|YP_001049963.1| DNA methylase N-4/N-6 domain-containing protein [Shewanella baltica
           OS155]
 gi|125997019|gb|ABN61094.1| DNA methylase N-4/N-6 domain protein [Shewanella baltica OS155]
          Length = 570

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 33/57 (57%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           R + G +L   +KPE  L  I+   + P DI+LD   G G++ A A KL R FIGIE
Sbjct: 465 RTEGGVELRSGKKPEKFLKVIINHFSNPEDIVLDYHLGCGSTAATALKLGRKFIGIE 521


>gi|323693302|ref|ZP_08107520.1| DNA methylase [Clostridium symbiosum WAL-14673]
 gi|323502785|gb|EGB18629.1| DNA methylase [Clostridium symbiosum WAL-14673]
          Length = 416

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 97/230 (42%), Gaps = 36/230 (15%)

Query: 37  AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
            K  +L+  DPPYN+   G   +  +   D + +S   F  F   DA+TR +       +
Sbjct: 186 GKLANLVVTDPPYNVNYEGSAGKIKN---DNMENS--AFYQF-LLDAYTRMY-----ESM 234

Query: 97  KPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNAHETLIWA 155
             + +++V  +            +  F++    +W+K + +    GR  +Q  HE  ++ 
Sbjct: 235 ADDASIYVFHADTEGLNFRRAFADAGFYLSGCCIWKKQSLV---LGRSPYQWMHEPCLFG 291

Query: 156 -SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
              S K + YT   +                  I    +  +N D    HPT KP  LL+
Sbjct: 292 WKKSGKHQWYTGRKETT----------------IWEFDKPKKNGD----HPTMKPIPLLA 331

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
             +++S+    ++LDPF GSG++    ++  R    IE+ + + D+  KR
Sbjct: 332 YPIMNSSMTNSLVLDPFGGSGSTLIACEQTGRICHTIELDEKFCDVIVKR 381


>gi|308061616|gb|ADO03504.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter pylori
           Cuz20]
          Length = 252

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 96/247 (38%), Gaps = 28/247 (11%)

Query: 29  ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
           +SVLE       DL    PPYNL +  Q                + F +++ Y  + + W
Sbjct: 17  VSVLETFEKGFYDLCVTSPPYNLSVEYQ--------------GSNDFRAYDDYLNWCKNW 62

Query: 89  LLACRRVLKPNGTLWV----IGSYHNIFRIGT----MLQNLNFWILNDIVWRKSN-PMPN 139
           L  C    K    L +      + H    +G     + +   +   N I+W +SN     
Sbjct: 63  LKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNESNISRRT 122

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
             G   Q +    I    +P      F  +  K   +   +  +  +   +G      + 
Sbjct: 123 AWGSWLQASAPYAI----APVELIVIFYKNEYKRQKQTSTISKEEFLLYTNGLWSFSGES 178

Query: 200 GEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E++++Y 
Sbjct: 179 KKRLKHPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEIEKEYC 238

Query: 259 DIATKRI 265
           +++ KRI
Sbjct: 239 ELSKKRI 245


>gi|322379314|ref|ZP_08053692.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter suis
           HS1]
 gi|322380167|ref|ZP_08054405.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter suis
           HS5]
 gi|321147406|gb|EFX42068.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter suis
           HS5]
 gi|321148259|gb|EFX42781.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter suis
           HS1]
          Length = 254

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 101/241 (41%), Gaps = 27/241 (11%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           L  +S+D I   PPYN+   G  Y       +   DS D    ++ Y  F+  +L  C  
Sbjct: 23  LEEQSLDCIITSPPYNV---GMAY-------NGSDDSQD----YQEYLDFSAHYLANCYA 68

Query: 95  VLKPNGTLWV-------IGSYHNI-FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
             K +G L +        G   ++   I ++ + + +   + I+W + N         + 
Sbjct: 69  WAKKSGRLCLNIPLDKNKGGQQSVGADIISLAKKMGWCYHSSIIWNEGNVSRRTAWGSWL 128

Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDV-QMRSDWLIPICSGSERLRNKDGEKL-H 204
           +A    + A   P      F  +  K  ++ V  +  +  I   +G      +  +++ H
Sbjct: 129 SASAPYVIA---PVELIVIFYKEVWKKQHKGVSDLSKEEFIAWTNGLWSFNGESAKRIGH 185

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           P   P  L  R +   +  GD+I DPF GSGT+   A   +R+F+GIE+   Y +++ +R
Sbjct: 186 PAPFPRELPRRCIKLFSFIGDVICDPFSGSGTTMLEAYANQRNFVGIELDPTYCELSKQR 245

Query: 265 I 265
            
Sbjct: 246 F 246


>gi|33594038|ref|NP_881682.1| putative modification methylase [Bordetella pertussis Tohama I]
 gi|33564112|emb|CAE43384.1| putative modification methylase [Bordetella pertussis Tohama I]
 gi|332383455|gb|AEE68302.1| putative modification methylase [Bordetella pertussis CS]
          Length = 983

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 41/66 (62%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           GEK++  Q   +++ R  + +T PGD++LDP  GSGT+  VA++  R +I I+  +  + 
Sbjct: 464 GEKIYVVQTSISVVQRCFLMTTDPGDLVLDPTCGSGTTAYVAEQWGRRWITIDTSRVALA 523

Query: 260 IATKRI 265
           +A  RI
Sbjct: 524 LARARI 529



 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 78/171 (45%), Gaps = 32/171 (18%)

Query: 19  WKDKIIKGNSISVLEKLPAKS-----VDLIFADPPYNLQLN-----------------GQ 56
           W++++I G+S+ V+  L  +      V  I+ DPPY ++ N                 G 
Sbjct: 161 WQNRMILGDSLQVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGNAGH 220

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
           + R +   V A  D+W       +Y  + R  L+  R +L  +G+++V     N+ R+  
Sbjct: 221 ITR-EPEQVKAFRDTWR--DGIHSYLTYLRDRLMVARDLLTESGSIFVQIGDENVHRVRA 277

Query: 117 MLQNL--NFWILNDIVWRK-SNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
           +L  +  +   ++ IV+ K S+   +F G  F    +TL+W + + KA  Y
Sbjct: 278 LLDEVFGDDNCVSTIVFAKTSSSTGDFIGPTF----DTLLWYARNKKAVKY 324


>gi|308063125|gb|ADO05012.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter pylori
           Sat464]
          Length = 252

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 96/247 (38%), Gaps = 28/247 (11%)

Query: 29  ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
           +SVL+       DL    PPYNL +  Q                + F +++ Y  + + W
Sbjct: 17  VSVLKTFEKGFYDLCITSPPYNLSIEYQ--------------GSNDFRAYDDYLNWCKNW 62

Query: 89  LLACRRVLKPNGTLWV----IGSYHNIFRIGT----MLQNLNFWILNDIVWRKSN-PMPN 139
           L  C    K    L +      + H    +G     + +   +   N I+W +SN     
Sbjct: 63  LKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNESNISRRT 122

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
             G   Q +    I    +P      F  +  K   +   +  +  +   +G      + 
Sbjct: 123 AWGSWLQASAPYAI----APVELIVVFYKNEYKCQKQTSTISKEEFLLYTNGLWSFSGES 178

Query: 200 GEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E++++Y 
Sbjct: 179 KKRLKHPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEIEKEYC 238

Query: 259 DIATKRI 265
           +++ KRI
Sbjct: 239 ELSKKRI 245


>gi|313892471|ref|ZP_07826061.1| DNA (cytosine-5-)-methyltransferase [Dialister microaerophilus UPII
           345-E]
 gi|313119153|gb|EFR42355.1| DNA (cytosine-5-)-methyltransferase [Dialister microaerophilus UPII
           345-E]
          Length = 299

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 42/68 (61%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+HPTQKP  +L +++   T   D+++DP  GSG++     +L RS  G E+++++   A
Sbjct: 214 KIHPTQKPVNILKKLIEIFTDEKDVVIDPVAGSGSTLRACMELNRSCYGFEVEKEFYRSA 273

Query: 262 TKRIASVQ 269
            +++ + +
Sbjct: 274 KEKMLNAK 281


>gi|294340230|emb|CAZ88602.1| Phage related DNA methyltransferase (cytosine-N(4)-specific)
           [Thiomonas sp. 3As]
          Length = 454

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           R + K G+ + HP   P  L   ++ + T   DI+ +PF GSG++   A++  R+   +E
Sbjct: 349 RHKGKIGQDIDHPAVFPVVLPEFVIEAFTDQADIVFEPFGGSGSTMLAAERTGRTCRAVE 408

Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLTGK 282
           +  +Y+D+A +R     P   + L V TG+
Sbjct: 409 IAPEYVDVAIRRFLQNHPQEEVTL-VATGQ 437


>gi|317181606|dbj|BAJ59390.1| adenine specific DNA methyltransferase [Helicobacter pylori F57]
          Length = 252

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 95/247 (38%), Gaps = 28/247 (11%)

Query: 29  ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
           +SVLE       DL    PPYNL +  Q                + F +++ Y  + + W
Sbjct: 17  VSVLETFEKGFYDLCITSPPYNLSIEYQ--------------GSNDFRAYDDYLNWCKNW 62

Query: 89  LLACRRVLKPNGTLWV----IGSYHNIFRIGT----MLQNLNFWILNDIVWRKSN-PMPN 139
           L  C    K    L +      + H    +G     + +   +   N I+W +SN     
Sbjct: 63  LKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNESNISRRT 122

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
             G   Q +    I    +P      F  +  K   +   +  +  +   +G      + 
Sbjct: 123 AWGSWLQASAPYAI----APVELIVVFYKNEYKRQKQTSTISKEEFLLYTNGLWSFSGES 178

Query: 200 GEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E++++Y 
Sbjct: 179 KKRLKHPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEIEKEYC 238

Query: 259 DIATKRI 265
            ++ KRI
Sbjct: 239 KLSKKRI 245


>gi|53803170|ref|YP_115058.1| prophage LambdaMc01, DNA methyltransferase [Methylococcus
           capsulatus str. Bath]
 gi|53756931|gb|AAU91222.1| prophage LambdaMc01, DNA methyltransferase [Methylococcus
           capsulatus str. Bath]
          Length = 447

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 52/97 (53%), Gaps = 3/97 (3%)

Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           R + K G+ + HP   P AL   ++ + +  G ++ +PF GSGT+   A++  R    +E
Sbjct: 342 RHKGKIGKGIDHPAVFPVALPQFVMEAYSDEGAVVFEPFGGSGTTMLAAERTGRVCRSVE 401

Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
           +  +Y+D+A KR     P  ++ +T+L   ++   VA
Sbjct: 402 IAPEYVDVAIKRFQQNHP--DVAVTLLASGQSFAEVA 436


>gi|311105221|ref|YP_003978074.1| C-5 cytosine-specific DNA methylase 1 [Achromobacter xylosoxidans
           A8]
 gi|310759910|gb|ADP15359.1| C-5 cytosine-specific DNA methylase 1 [Achromobacter xylosoxidans
           A8]
          Length = 253

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYID 259
           ++ HP QKPE L+   +  +  P  ++ DP+ GSG++G  A +    +F GIE +  Y D
Sbjct: 163 KRHHPMQKPEILMRWSIEQAGFPRRLV-DPYMGSGSTGVAAVQTGCEAFFGIESQISYFD 221

Query: 260 IATKRIASVQ 269
           IA +RI + Q
Sbjct: 222 IACRRIEAAQ 231


>gi|253828098|ref|ZP_04870983.1| adenine-specific DNA methylase [Helicobacter canadensis MIT
           98-5491]
 gi|253511504|gb|EES90163.1| adenine-specific DNA methylase [Helicobacter canadensis MIT
           98-5491]
          Length = 238

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 93/229 (40%), Gaps = 29/229 (12%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           + + +L+ L   S+DL F DP Y   L+   Y  +            +    +  ++   
Sbjct: 34  DGLELLQSLGDCSIDLCFFDPQYRGVLDKMRYGNEGERQKG------RSVLVQMSESTII 87

Query: 87  AWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
            ++    RVLK +  L + I  +H    +   L + +  I++ I W K   M    G R 
Sbjct: 88  HFIQEISRVLKSSRYLMLWIDKFHLCEGVRPWLDSTSLEIVDLITWDK---MKMGMGYRT 144

Query: 146 QNAHETLIWASPSP-KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
           +   E L+     P KAKG    ++     +E         IP          ++  K H
Sbjct: 145 RKQSEYLLIVQKKPIKAKGTWKLHNIRDVCSEK--------IP----------QNELKAH 186

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           P  KP+ L   ++ S T  GD++ DP  GS +     K+L R+FIG  +
Sbjct: 187 PHSKPKTLQKTLIESCTNIGDLVCDPAAGSFSVLECCKELGRNFIGTNL 235


>gi|331090152|ref|ZP_08339040.1| hypothetical protein HMPREF1025_02623 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330402098|gb|EGG81670.1| hypothetical protein HMPREF1025_02623 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 537

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 42/73 (57%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           R++ G +    +KPEAL+  I+   +  GD +LD F GSG++ A A K+ R ++G+E+  
Sbjct: 325 RHEGGVEFRSGKKPEALIEMIIRYFSNKGDWVLDSFLGSGSTIATAHKMGRKWVGVELGD 384

Query: 256 DYIDIATKRIASV 268
               +   R+ +V
Sbjct: 385 HAYTLCKVRMDNV 397


>gi|251795626|ref|YP_003010357.1| DNA methylase N-4/N-6 domain protein [Paenibacillus sp. JDR-2]
 gi|247543252|gb|ACT00271.1| DNA methylase N-4/N-6 domain protein [Paenibacillus sp. JDR-2]
          Length = 358

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 73/353 (20%), Positives = 118/353 (33%), Gaps = 105/353 (29%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQ-----LYRPDHSLVDAVTDSWD 73
           I+ G+  +V+  +  +        PPY    +  + G       Y P   L      +W+
Sbjct: 2   ILHGDCRTVMASMEPEQFHTCVTSPPYWGLRDYGIPGSDWPEVTYTPMAGLPQVTVPAWN 61

Query: 74  KFSSFEAY-DAFTRAWLLACR---RVLKPNGTLWV-----------------------IG 106
                E   + F    +L  R   R+L+P GTLW+                       +G
Sbjct: 62  GCLGLEPTPEMFVAHSVLVFREVWRLLRPEGTLWMNYGDSYAKSGLSGMGDPTIGERNLG 121

Query: 107 SYHNI-----------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAH 149
               I                 +R+   LQ   +++  D +W K N MP     R   AH
Sbjct: 122 GMKAIAKSIPIGLKPKDLIGIPWRVAFALQADGWYLRMDNIWNKPNCMPESVKDRPTKAH 181

Query: 150 ETLIWASPSPK--------------------------------------------AKGYT 165
           E +   S S +                                             K Y+
Sbjct: 182 EYMFLLSKSDRYYYDAEAIKEQMNDSSIARLSQDVENQQGSDRANGGSKKGMKAVGKAYS 241

Query: 166 F--NYDALKAANEDVQMRSDWLIPICSGSERLRN------KDGEKLHPTQKPEALLSRIL 217
           F  N +  K   +  Q R+D       G+   R+          + H    PE L+   +
Sbjct: 242 FARNVNEGKVPGQVKQHRTDREDVEYYGTRNKRSVWTVATAQFTEAHFATFPEKLIEPCI 301

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
           ++       +LDPF GSGT+  VA +  R    IE+ + Y++IA +R A++QP
Sbjct: 302 LAGAPVDGKVLDPFGGSGTTLKVALENNRECTIIELGEQYVEIAERRTATLQP 354


>gi|289579072|ref|YP_003477699.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter italicus
           Ab9]
 gi|289528785|gb|ADD03137.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter italicus
           Ab9]
          Length = 629

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 72/326 (22%), Positives = 135/326 (41%), Gaps = 60/326 (18%)

Query: 18  EWKDKIIKGNSISVLEKLPAKS-----------VDLIFADPPYN--------LQLNGQLY 58
           +W +++I G+++ V++ L A             +DLI+ DPP++        + L G   
Sbjct: 63  DWYNRLIYGDNLLVMQALLAGDEESGLPSLRGKIDLIYIDPPFDSKADYRTKITLPGGDI 122

Query: 59  RPDHSLVD--AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-----WVIGSYHNI 111
               S+++  A +D+W + +   +Y       L+  + +L   G +     W +G Y  I
Sbjct: 123 EQKPSVIEQFAYSDTWKEGTV--SYLKMLYPRLVLMKELLSDRGVICVHVDWHVGHYVKI 180

Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
             +  +     F  +N+IVW   N   N + +    AH+ ++  S +          D  
Sbjct: 181 L-LDEIFGKDKF--VNEIVWYYYNKYSNAK-KCLPRAHDNILVYSKNNDHIYNEIRIDRG 236

Query: 172 KAANEDVQMRSDWLIPIC---SGSERLRNKDGEK---------LHP---------TQKPE 210
           +   + V++  + ++      +G+   R  + +K         L P         TQK  
Sbjct: 237 ETVKQLVRVNVNGVLQNARDENGNLLYREVNDKKADDVFIIPQLQPASSEWMNYKTQKHH 296

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS--- 267
            LL RI+   +    I+ D F GSGT+GAVA++L R +I  ++ +    I  KR+     
Sbjct: 297 DLLERIIKIFSNEDSIVADFFAGSGTTGAVAERLGRRWIMCDIGKPACMIMRKRLIDQNA 356

Query: 268 ----VQPLGNIELTVLTGKRTEPRVA 289
                Q +G+ +  V    +   RV 
Sbjct: 357 KPFLYQSVGDYQKEVFASSKMFKRVG 382


>gi|298346373|ref|YP_003719060.1| ParB family DNA methylase [Mobiluncus curtisii ATCC 43063]
 gi|298236434|gb|ADI67566.1| ParB family DNA methylase [Mobiluncus curtisii ATCC 43063]
          Length = 418

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 110/271 (40%), Gaps = 37/271 (13%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           N   V   +  K  +L+  DPPYN+          +S +    D  D  + ++    F  
Sbjct: 176 NPADVETLMDGKQANLVVTDPPYNVDFKS------NSGLKIAGDKQDTDTFYQ----FLL 225

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-F 145
           A        L+  G+ +V  +            +  F++    +W K + +    GR  +
Sbjct: 226 AAFTNMADALEKGGSAYVFHADTEGLNFRKAFLDAGFYLSGCCIWVKDSLV---LGRSPY 282

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
           Q  HE ++          Y +  D   A   + +  + W     + ++  +N D    HP
Sbjct: 283 QWQHEPVL----------YGWKKDGSHAWYANRKQTTVW-----NFAKPRKNSD----HP 323

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T KP  LL+  + +ST+   IILD F GSG++   A+   R+   +E+ + Y  +  +R 
Sbjct: 324 TSKPLDLLAYPIRNSTQTNAIILDTFAGSGSTLMAAQATDRTCYCMELDEKYASVIVRRY 383

Query: 266 ASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
           A        +   +T +R+  + A+  LV++
Sbjct: 384 AEATG----DAAGITCERSGGQYAYLDLVKK 410


>gi|158423793|ref|YP_001525085.1| site-specific DNA-methyltransferase [Azorhizobium caulinodans ORS
           571]
 gi|158330682|dbj|BAF88167.1| site-specific DNA-methyltransferase [Azorhizobium caulinodans ORS
           571]
          Length = 315

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 94/261 (36%), Gaps = 61/261 (23%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE------ 79
           G+++ +L  L   SV  +  DPPY+            SL D    +  K+ S E      
Sbjct: 89  GDALEILPTLAPGSVGAVLCDPPYSSG--------GASLSDRSRPTSAKYQSSEHRGLYP 140

Query: 80  ----------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
                     +Y A++  WL   R +  P     V   +  +      LQ    W+   +
Sbjct: 141 EFQGDTRDQRSYLAWSTLWLSRARMLAAPGALCAVFTDWRQLPVTSDALQCAG-WVWRGV 199

Query: 130 V-WRKSNPMPNFRGR----RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
             W K+      RGR    R++   E ++W          T     LK        R+  
Sbjct: 200 APWDKTE-----RGRPQLGRYRAQAEYVVWG---------TNGARPLKGPVAPGVFRAP- 244

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
            IP              K H   KP  L+  ++     P   ILDPF GSGT G    + 
Sbjct: 245 -IPHV------------KHHIAGKPVELMEGLMSIMEGP---ILDPFMGSGTVGLACARK 288

Query: 245 RRSFIGIEMKQDYIDIATKRI 265
              +IGIE++  Y +IA  R+
Sbjct: 289 GLPYIGIEVEPAYYEIALSRL 309


>gi|208434209|ref|YP_002265875.1| typeII DNA modification enzyme [Helicobacter pylori G27]
 gi|208432138|gb|ACI27009.1| typeII DNA modification enzyme [Helicobacter pylori G27]
          Length = 261

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 95/249 (38%), Gaps = 34/249 (13%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
           SVLE       DL    PPYNL +  Q                + F +++ Y  + + WL
Sbjct: 27  SVLETFEKGFYDLCVTSPPYNLSIEYQ--------------GSNDFRAYDDYLNWCKNWL 72

Query: 90  LACRRVLKPNGTLWV--------IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             C    K    L +         G       I  + +   +   N I+W +SN      
Sbjct: 73  KNCYFWGKEQARLCLNVPLDTNKHGKQSLEADITIVAKECGWKYQNTIIWNESNI----- 127

Query: 142 GRRFQNAHETLIWASP----SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
            RR   A  + + AS     +P      F  +  K   +   M  +  +   +G      
Sbjct: 128 SRR--TAWGSWLQASAPYAIAPVELIVVFYKNEYKRQKQTSTMSREEFLLYTNGLWSFSG 185

Query: 198 KDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           +  + L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E++++
Sbjct: 186 ESKKHLKHPAPFPRELPRRCIQLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEIEKE 245

Query: 257 YIDIATKRI 265
           Y +++ KRI
Sbjct: 246 YCELSKKRI 254


>gi|163735089|ref|ZP_02142525.1| Modification methylase DpnIIB [Roseobacter litoralis Och 149]
 gi|161391547|gb|EDQ15880.1| Modification methylase DpnIIB [Roseobacter litoralis Och 149]
          Length = 390

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 38/69 (55%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           R++D   +H TQKP   + R ++++   G  I +PF GS TS   A+   R  + IE+  
Sbjct: 292 RDQDATTVHGTQKPVECMRRPMLNNASAGQAIYEPFSGSCTSIIAAESSGRLCLAIELDP 351

Query: 256 DYIDIATKR 264
            Y+D+  +R
Sbjct: 352 AYVDVTVQR 360


>gi|76803974|gb|ABA55917.1| hemagglutinin associated protein [Vibrio sp. DAT722]
          Length = 224

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 91/230 (39%), Gaps = 35/230 (15%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF---EAYDA 83
           +++  L+ L   SVDL   DPPY      +       L ++ + S   FS F      + 
Sbjct: 8   DAVDWLKTLDDSSVDLFITDPPYESLEKHRKIGTTTRLKESKSSSNQWFSIFPNTRFEEL 67

Query: 84  FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
           FT  +     RVLK     ++      +F    + + + F     IVW K        G 
Sbjct: 68  FTEIY-----RVLKKGSHFYLFCDQETMFVAKPIAEQVGFKFWKPIVWDKCAIG---MGY 119

Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
            ++  +E +++     +                     +D  IP     + L  K   + 
Sbjct: 120 HYRARYEFILFFEKGKRK-------------------LNDLSIP-----DVLEYKRVWRG 155

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           +PT+KP  LL  ++  S+   D++ D FFGSG++   A  L R ++G ++
Sbjct: 156 YPTEKPVDLLEVLIKQSSSEHDVVADSFFGSGSTLIAANNLSRKYLGCDV 205


>gi|55378613|ref|YP_136463.1| CTAG modification methylase [Haloarcula marismortui ATCC 43049]
 gi|55231338|gb|AAV46757.1| CTAG modification methylase [Haloarcula marismortui ATCC 43049]
          Length = 342

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 104/265 (39%), Gaps = 43/265 (16%)

Query: 36  PAKSVDLIFADPPYNL-QLNGQLYRPDHSLVDAVTDSWDKFSSFE-AYDAFTRAWLLACR 93
           P  SV+L+   PPY + ++   ++      +    DS D   +F   +D     W     
Sbjct: 18  PDDSVELVITSPPYPMIEMWDDIFTALDPDIGTALDSDDGDRAFTLMHDVLDAVWA-EIE 76

Query: 94  RVLKPNGTLWV-IG-----------SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           RVL P G   + +G           SY N   I   L +     L DI+WRK    P   
Sbjct: 77  RVLVPGGIACINVGDATRSLSDGFRSYPNHAEITDRLTDHGLRALPDILWRK----PTNS 132

Query: 142 GRRFQNA------------HETLIWASPSPKAK---GYTFNYDALKAANEDVQMRSD-WL 185
           G +F  +            HE ++      + +   G    Y++     E  +  SD W 
Sbjct: 133 GAKFMGSGMVPPNAYPTLEHEHILVFRNGERRRLEPGADRRYESAYFWEERNEWFSDLWE 192

Query: 186 IP--ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           +P       + LR++ G    P   P  L+S   V     GD +LDPF G+GT+   A  
Sbjct: 193 LPGETQDLDDGLRDRSG--AFPLTVPYRLISMFSVY----GDTVLDPFLGTGTTTLAAMV 246

Query: 244 LRRSFIGIEMKQDYIDIATKRIASV 268
             R+ IG++   D +    +R+A+ 
Sbjct: 247 AGRNSIGVDRDPDLLSALEERVATA 271


>gi|156741157|ref|YP_001431286.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156232485|gb|ABU57268.1| DNA methylase N-4/N-6 domain protein [Roseiflexus castenholzii DSM
           13941]
          Length = 314

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 119/307 (38%), Gaps = 80/307 (26%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD--------HSLVDAVTDSWD-- 73
           I  +    + + PA+S+  I  DPPY ++     Y PD        H  V  +  S+D  
Sbjct: 25  IHADCYEWMRQAPAESIHAIVTDPPYGVKE----YDPDQLEKRSNGHGGVWRIPPSFDGH 80

Query: 74  ---KFSSFEAYDAFTRA--------WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                  F A +   RA        W     R+L+P   +++     N+F     L  + 
Sbjct: 81  NRSPLPRFTALNPRERARIQEYFYEWARLTLRLLRPGAHVFLAS---NVF-----LSQIV 132

Query: 123 FWILNDIVWRKSNPMPNFRGR------------RFQNAHETL---------------IWA 155
           F  L D           FRG+            R +NA E                 I+ 
Sbjct: 133 FAALTDAGL-------EFRGQVIRLVRTLRGGDRPKNAEEEFPDVCSMPRGCYEPWGIFR 185

Query: 156 SPSPK-----AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-HPTQKP 209
            P PK     A   TF    L+    D     D +      SER   K+     HP+ KP
Sbjct: 186 KPVPKDMTVGACLRTFQTGGLRR-KPDGNPFEDVI-----ESERTPQKERSIANHPSLKP 239

Query: 210 EALLSRILVSSTKPGD-IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           ++ L +I+ +S   G  I+LDPF G+G++ A A+ +  + IGIE  ++Y  ++ + + ++
Sbjct: 240 QSFLRQIVYASLPLGKGIVLDPFMGAGSTLAAAEAVGYTAIGIEKNREYYAMSLRAVPAL 299

Query: 269 QPLGNIE 275
              G  E
Sbjct: 300 SLSGTKE 306


>gi|323139912|ref|ZP_08074936.1| DNA methylase N-4/N-6 domain protein [Methylocystis sp. ATCC 49242]
 gi|322394829|gb|EFX97406.1| DNA methylase N-4/N-6 domain protein [Methylocystis sp. ATCC 49242]
          Length = 237

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           W  P  +G  R R +     HPT K  A+++  +   +  GD+++DPF GSGT+   A K
Sbjct: 101 WNYPGLAGFGRDRQQQLAD-HPTVKNCAMIADAIRDVSDRGDLVIDPFSGSGTTIIGAAK 159

Query: 244 LRRSFIGIEMKQDYIDIATKR 264
             R    IE++  Y D+A +R
Sbjct: 160 TGRRACAIELEPKYTDVAIRR 180


>gi|225375476|ref|ZP_03752697.1| hypothetical protein ROSEINA2194_01101 [Roseburia inulinivorans DSM
           16841]
 gi|257439458|ref|ZP_05615213.1| DNA (cytosine-5-)-methyltransferase [Faecalibacterium prausnitzii
           A2-165]
 gi|225212673|gb|EEG95027.1| hypothetical protein ROSEINA2194_01101 [Roseburia inulinivorans DSM
           16841]
 gi|257198117|gb|EEU96401.1| DNA (cytosine-5-)-methyltransferase [Faecalibacterium prausnitzii
           A2-165]
          Length = 264

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 35/63 (55%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +HPTQKP  L   ++ + T+PG+++ D   GSGT+   A    R F+  E    +   AT
Sbjct: 188 VHPTQKPVELCEYLIRTYTRPGEVVADICAGSGTTAVAAVNTGRRFVCFETAPAFYAPAT 247

Query: 263 KRI 265
           +RI
Sbjct: 248 ERI 250


>gi|168494847|ref|ZP_02718990.1| DNA methylase [Streptococcus pneumoniae CDC3059-06]
 gi|168494889|ref|ZP_02719032.1| DNA methylase [Streptococcus pneumoniae CDC3059-06]
 gi|168494942|ref|ZP_02719085.1| DNA methylase [Streptococcus pneumoniae CDC3059-06]
 gi|168495009|ref|ZP_02719152.1| DNA methylase [Streptococcus pneumoniae CDC3059-06]
 gi|307126208|ref|YP_003878239.1| DNA methylase [Streptococcus pneumoniae 670-6B]
 gi|183575130|gb|EDT95658.1| DNA methylase [Streptococcus pneumoniae CDC3059-06]
 gi|183575191|gb|EDT95719.1| DNA methylase [Streptococcus pneumoniae CDC3059-06]
 gi|183575250|gb|EDT95778.1| DNA methylase [Streptococcus pneumoniae CDC3059-06]
 gi|183575298|gb|EDT95826.1| DNA methylase [Streptococcus pneumoniae CDC3059-06]
 gi|306483270|gb|ADM90139.1| DNA methylase [Streptococcus pneumoniae 670-6B]
          Length = 224

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/250 (21%), Positives = 100/250 (40%), Gaps = 36/250 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K + G+ + ++++ P    DL   DPPY    +G   R  +    +       +     +
Sbjct: 3   KFLNGDCMDIMKQYPDNYFDLAIVDPPY---FSGPEKRKFYGRKISPIGVSRLYGEISEW 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
               R +     RV K N  +W +  +   F  G             IVW K N   +F 
Sbjct: 60  KIPNRDYFDELFRVSK-NQIIWGVNYFDYSFGSGR------------IVWDKVNGQSSF- 105

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK--D 199
                 +   + + S     + + + ++ +      +Q +S     I  G  +  NK  +
Sbjct: 106 ------SDCEIAYCSYHDSTRLFRYMWNGM------MQGKS-----ISEGHIQQGNKALN 148

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
             ++HPTQKP  L   +L +  K GD ILD   GS +S     +L   ++G E+ +   +
Sbjct: 149 EVRIHPTQKPVNLYLWLLQTYAKEGDKILDTHVGSASSLIACGELGFDYVGCEIDKSIFN 208

Query: 260 IATKRIASVQ 269
           +A +R+ + +
Sbjct: 209 LAQQRLDAYE 218


>gi|326336473|ref|ZP_08202643.1| modification methylase HpaI [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325691346|gb|EGD33315.1| modification methylase HpaI [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 297

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 26/132 (19%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++   +++ V+  L  +S+D+I  DPPY    N +L RP                 FE +
Sbjct: 5   QLYNADNLEVMATLADESIDVICIDPPYLYLKNQKLERP-----------------FEEH 47

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
             F       C+R+L   G + + G   + +R  TML  L F    +++W K  +  P  
Sbjct: 48  KFFAE-----CKRLLTKKGFIVMFGRGTSFYRWNTMLDGLGFVFKEEVIWNKGFSTAPTL 102

Query: 141 RGRRFQNAHETL 152
             +RF   HET+
Sbjct: 103 PIQRF---HETI 111



 Score = 43.5 bits (101), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 14/106 (13%)

Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL---VSSTKPGD- 225
            LKA  E ++ RS     I    ER       +LHPTQKP  LL R+L   +   KP + 
Sbjct: 198 CLKAIKEGMRERS----IIKVNYERFN-----RLHPTQKPVRLLERLLALVIPKDKPLNE 248

Query: 226 -IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
            ++ D F GS +   V   +    I  E+ ++Y +   +RI ++QP
Sbjct: 249 IVVADFFAGSMSCMEVVYNMGMKGIATEIDKEYFEKGKQRIENLQP 294


>gi|261879520|ref|ZP_06005947.1| type II restriction-modification system methylation subunit
           [Prevotella bergensis DSM 17361]
 gi|270333837|gb|EFA44623.1| type II restriction-modification system methylation subunit
           [Prevotella bergensis DSM 17361]
          Length = 460

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 111/275 (40%), Gaps = 49/275 (17%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS-F 78
           K  II G+S + +  +P +SV LI   PPY              L D   D    F   +
Sbjct: 4   KHTIIYGDSRN-MSLIPNESVQLIVTSPPY------------WQLKDYGVDKQIGFDDLY 50

Query: 79  EAY-DAFTRAWLLACRRVLKPNGTLWV-IG------SYHNIFR-------IGTMLQNLNF 123
           E Y +     W   C R L+P   L + IG      +Y+  ++       I    + + F
Sbjct: 51  EDYINNLNLVWK-ECFRTLEPGCRLCINIGDQFARSAYYGRYKVIPIHSEIIRFCEEIGF 109

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL-------KAANE 176
             +  I+W+K   M    G       +T++ + P P+      +++ +       K+A+ 
Sbjct: 110 DYMGSIIWQKPTSMHTTGG-------DTVMGSFPYPRGGIVKIDFELILLFKKTGKSASV 162

Query: 177 DVQMRSDWLIPICSGSERLR---NKDGEKL--HPTQKPEALLSRILVSSTKPGDIILDPF 231
             +++    +     +E      N  G K   H    PE L  R++   +  GD ILDPF
Sbjct: 163 SKEIKEASKLTRQEWNEYFFSHWNFGGAKQDKHIAVFPEELPKRLIRMFSFVGDTILDPF 222

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
            GSGT+   AK   R+ IG E+ Q +     +++ 
Sbjct: 223 MGSGTTALAAKNQNRNSIGYEINQKFQKFYEEKVV 257


>gi|42559533|sp|Q9LAI2|MTB1_BACSQ RecName: Full=Modification methylase BslI; Short=M.BslI; AltName:
           Full=N(4)- cytosine-specific methyltransferase BslI
 gi|6958314|gb|AAF32529.1|AF135191_2 BslIM [Bacillus sp. NEB-606]
          Length = 912

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 108/270 (40%), Gaps = 49/270 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+I+G+S  VL+ +   +       PPY    N + Y    +L     D ++        
Sbjct: 651 KLIQGDSYEVLKSVEDNTFAAAVTSPPY---YNAREYSQWPNLYLYFNDMYN-------- 699

Query: 82  DAFTRAWLLACRRVLKPNGTLWV-----IGSYHNIFRIGTM--------------LQNLN 122
                  +  C R LKP G++++     I    NI    +M               Q   
Sbjct: 700 ------IIKECFRTLKP-GSVFLYNIADIVDNENIIVKSSMGNKRIPLGAYTIYFFQKAG 752

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA---NEDVQ 179
           F +L++I+W K  P  N   R+  +   T  +  P   A  + F +    A    ++D Q
Sbjct: 753 FELLDNIIWDKGEPQSN---RQKNDGKFTPHYQKPL-NAYEHMFIFKKTGAPLTLSDDWQ 808

Query: 180 -MRSDWLIPICSGSERLR-NKDGEKL--HPTQKPEALLSRILVSSTK-PGDIILDPFFGS 234
             R  W+  I       + N  GE +  H    PE +   +    TK   DIILDPF GS
Sbjct: 809 SKRGSWIKNIVPFQPVFKINSKGENILGHTAPFPEDIPRFVANVFTKHDNDIILDPFSGS 868

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            TS   + K  R  +GIE+  DY++++  R
Sbjct: 869 LTSAIASYKSNRIGLGIELSPDYVELSRDR 898


>gi|109947114|ref|YP_664342.1| adenine specific DNA methyltransferase [Helicobacter acinonychis
           str. Sheeba]
 gi|109714335|emb|CAJ99343.1| adenine specific DNA methyltransferase [Helicobacter acinonychis
           str. Sheeba]
          Length = 252

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 96/246 (39%), Gaps = 28/246 (11%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
           SVLE       DL    PPYNL +  Q                + F +++ Y  + + W 
Sbjct: 18  SVLETFEKGFYDLCVTSPPYNLSVEYQ--------------GSNDFRAYDDYLNWCKNWF 63

Query: 90  LACRRVLKPNGTLWV----IGSYHNIFRIG---TMLQNLNFW-ILNDIVWRKSN-PMPNF 140
             C    K    L +      + H    +G   T++     W   N I+W +SN      
Sbjct: 64  KNCYFWGKEQARLCLNVPLDTNKHGKQSLGADMTIVAKECGWKYQNTIIWNESNISRRTA 123

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G   Q +    I    +P      F  +  K   +   +  +  +   +G      +  
Sbjct: 124 WGSWLQASAPYAI----APVELIIVFYKNEYKRQKQTSTISKEEFLLYTNGLWSFSGESK 179

Query: 201 EKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           ++L HP   P  L SR +   +   D I DPF GSGT+   A  L R  +G+E++++Y +
Sbjct: 180 KRLKHPAPFPRELPSRCIKLFSFLEDTIFDPFSGSGTTLLEANALGRFSVGLEIEKEYCE 239

Query: 260 IATKRI 265
           ++ KRI
Sbjct: 240 LSKKRI 245


>gi|150390344|ref|YP_001320393.1| DNA methylase N-4/N-6 domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149950206|gb|ABR48734.1| DNA methylase N-4/N-6 domain protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 424

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 99/252 (39%), Gaps = 36/252 (14%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           +  K  +L+  DPPYN+    +          A T   D   S + Y +F  A       
Sbjct: 198 MDGKKANLVVTDPPYNVAYEAK----------AGTIKNDDMKSDDFY-SFLLAAFKNMHS 246

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNAHETLI 153
            ++ + +++V  +            +  F++    +W K + +    GR  +Q  HE ++
Sbjct: 247 SMELDASIYVFHADTEGLNFRKSFVDAGFYLSGVCIWAKQSIV---LGRSPYQWKHEPIL 303

Query: 154 WA-SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
           +      K + Y+           D +  + W     + S+         LHPT KP  L
Sbjct: 304 FGWRKDGKHRWYS-----------DRKQNTIWNFDRPTKSD---------LHPTMKPVEL 343

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
            +  + +S+    IILDPF GSG++    ++  R    IE+ + Y D+  KR        
Sbjct: 344 CAYPIQNSSMSNCIILDPFGGSGSTLMACEQTGRICYSIELDEKYTDVIVKRYIEYAGTD 403

Query: 273 NIELTVLTGKRT 284
                + +G++T
Sbjct: 404 EDVFLIRSGEKT 415


>gi|224369183|ref|YP_002603347.1| two component protein (ParB-like partition domain/site-specific DNA
           modification methylase) [Desulfobacterium autotrophicum
           HRM2]
 gi|223691900|gb|ACN15183.1| two component protein (ParB-like partition domain/site-specific DNA
           modification methylase) [Desulfobacterium autotrophicum
           HRM2]
          Length = 530

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 120/307 (39%), Gaps = 71/307 (23%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           + +LP +SV L+   PPY    NG  Y    +              ++ +    +  L  
Sbjct: 233 MAELPKESVGLVLTSPPY---FNGMEYELGFT--------------YDEHLENVKGVLAE 275

Query: 92  CRRVLKPNGTLWV----IGSYH------NIFRIGTMLQNLN-------FWILNDIVWRK- 133
             RVL   G L +    I ++       N  RI  ML   N       F + ++I+W K 
Sbjct: 276 SARVLVKGGILALNVADITNFKGKNGTDNRSRIQPMLHFYNLCLRKHGFHLQDEIIWVKD 335

Query: 134 -----SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY--DALKAANEDVQMRS---- 182
                 +   N+  +     +  +    P      Y F    D    ++E++ ++S    
Sbjct: 336 SNSFTQDDAVNYTDKTVHTQYRIVDRHEPI-----YIFKKKGDRPIPSDENIILQSRISK 390

Query: 183 -DWLIPICSG---SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
            +W +   S    S   RN+     HP   P+ L  RI+   +  GD +LDPF GSGT+ 
Sbjct: 391 EEWKVYAPSAWQISPAPRNQG----HPNAFPDELARRIIRMYSFVGDTVLDPFLGSGTTV 446

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAF--NLLVER 296
            VA++L R  +G E    Y      + A ++ LG  E+     +R EP   F    L E 
Sbjct: 447 KVARELDRDGVGYERDLRY------KAAIMRKLGVAEVE----ERQEPVSDFAARQLEEL 496

Query: 297 GLIQPGQ 303
              QPG+
Sbjct: 497 EANQPGK 503


>gi|320174956|gb|EFW50072.1| putative DNA methylase [Shigella dysenteriae CDC 74-1112]
          Length = 352

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 37/62 (59%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F  SG++   A  L R  IG+E++    +   +
Sbjct: 283 HPCEKPAEMLQQIISASSRPGDLVADFFMDSGSTVKAALALGRRAIGVELETGRFEQTVR 342

Query: 264 RI 265
            +
Sbjct: 343 EV 344



 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 70/166 (42%), Gaps = 36/166 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  +  LP  SVDLI  DPPY                    + WD  + ++  
Sbjct: 11  ELINADCLEFIWSLPENSVDLIVTDPPY---------------FKVKPEGWD--NQWKGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           D + + WL  C     RVLKP G+L++   +     I  M++   F +LN I+W K  P 
Sbjct: 54  DDYLK-WLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAK--PS 109

Query: 138 PNFRG------RRFQNAHETLIWASP-----SPKAKGYTFNYDALK 172
             + G      R +  A E +++A        PK  GY     ALK
Sbjct: 110 GRWNGCNKESLRAYFPATERILFAEHYQGPYRPKDAGYAAKGSALK 155


>gi|224419165|ref|ZP_03657171.1| adenine-specific DNA methylase [Helicobacter canadensis MIT
           98-5491]
 gi|313142671|ref|ZP_07804864.1| modification methylase HhaII [Helicobacter canadensis MIT 98-5491]
 gi|313131702|gb|EFR49319.1| modification methylase HhaII [Helicobacter canadensis MIT 98-5491]
          Length = 229

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 93/229 (40%), Gaps = 29/229 (12%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           + + +L+ L   S+DL F DP Y   L+   Y  +            +    +  ++   
Sbjct: 25  DGLELLQSLGDCSIDLCFFDPQYRGVLDKMRYGNEGERQKG------RSVLVQMSESTII 78

Query: 87  AWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
            ++    RVLK +  L + I  +H    +   L + +  I++ I W K   M    G R 
Sbjct: 79  HFIQEISRVLKSSRYLMLWIDKFHLCEGVRPWLDSTSLEIVDLITWDK---MKMGMGYRT 135

Query: 146 QNAHETLIWASPSP-KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
           +   E L+     P KAKG    ++     +E         IP          ++  K H
Sbjct: 136 RKQSEYLLIVQKKPIKAKGTWKLHNIRDVCSEK--------IP----------QNELKAH 177

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           P  KP+ L   ++ S T  GD++ DP  GS +     K+L R+FIG  +
Sbjct: 178 PHSKPKTLQKTLIESCTNIGDLVCDPAAGSFSVLECCKELGRNFIGTNL 226


>gi|163932178|ref|YP_001642368.1| putative adenine methyltransferase [Lactobacillus johnsonii
           prophage Lj771]
 gi|163562132|gb|ABY26988.1| putative adenine methyltransferase [Lactobacillus johnsonii
           prophage Lj771]
          Length = 283

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 88/227 (38%), Gaps = 24/227 (10%)

Query: 40  VDLIFADPPYNLQLNGQLY-RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKP 98
            DL+  DPPYN+  + + + R   S      D  +     E +  F           +K 
Sbjct: 65  ADLLITDPPYNVDYSSKDFGRTKMSKTRKNNDIANDKMENEQFMQFLVQAFSNASVNMKL 124

Query: 99  NGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNAHETLIWASP 157
             + ++  S     +     +     +   ++W K+N +    GR+ +Q+ HE  ++   
Sbjct: 125 GASFYIWFSDLATVQFNEAAKESGLNVKETLIWVKNNFV---LGRQDYQHKHEPCLYGWV 181

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
              +  +  +       N D   RSD                   LHPT KP  L    +
Sbjct: 182 DGGSHSWYSDRKQTTILNFDKPQRSD-------------------LHPTMKPIPLFDYQI 222

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            +S+K GDI+LD F GSGT+    ++  R+   +E    Y+D+   R
Sbjct: 223 KNSSKSGDIVLDLFGGSGTTLMACEQDGRNAYLMEFDPRYVDVIIDR 269


>gi|288941263|ref|YP_003443503.1| DNA methylase N-4/N-6 domain-containing protein [Allochromatium
           vinosum DSM 180]
 gi|288896635|gb|ADC62471.1| DNA methylase N-4/N-6 domain protein [Allochromatium vinosum DSM
           180]
          Length = 1038

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 41/68 (60%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           E ++  Q  E ++ R L+ +T PGD++LDP  GSGT+  VA+K  R +I  +  +  I +
Sbjct: 507 ELMYVVQTAERIIERCLLMTTDPGDLVLDPTCGSGTTATVAEKWGRRWITCDTSRVAITL 566

Query: 261 ATKRIASV 268
           A +R+ + 
Sbjct: 567 AKQRLMTA 574



 Score = 39.3 bits (90), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 28/125 (22%), Positives = 57/125 (45%), Gaps = 25/125 (20%)

Query: 19  WKDKIIKGNSISVLEKLPAKS-----VDLIFADPPYNLQLNGQLYRP------------- 60
           W +++I G+S+ V+  L  K      V +I+ DPPY ++  G  ++P             
Sbjct: 216 WANRLIAGDSLLVMNSLIQKESLAGRVQMIYIDPPYGIKY-GSNFQPFVGKRDVKDRNDA 274

Query: 61  ----DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
               +  ++ A  D+W+      +Y  + R  LL  R +L  +G+++V  S  N+  +  
Sbjct: 275 DLTQEPEMIKAFRDTWE--LGIHSYLTYLRDRLLLARELLHESGSVFVQISDENLHHVRE 332

Query: 117 MLQNL 121
           ++  +
Sbjct: 333 IMDEV 337


>gi|29565979|ref|NP_817550.1| gp101 [Mycobacterium phage Cjw1]
 gi|29424704|gb|AAN01715.1| gp101 [Mycobacterium phage Cjw1]
          Length = 231

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 197 NKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS--GAVAKKLRRSFIGIEM 253
           N+DG K+ H T KP AL+  ++   T PG ++LDPF GSGT+    + +K R   I IE 
Sbjct: 156 NEDGNKVAHSTVKPLALMRWLVKLVTPPGGVVLDPFAGSGTTVEACLLEKFR--CIAIEN 213

Query: 254 KQDYIDIATKRI 265
           + DYI +  +R+
Sbjct: 214 EPDYIPLIEQRL 225


>gi|308184066|ref|YP_003928199.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter pylori
           SJM180]
 gi|308059986|gb|ADO01882.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter pylori
           SJM180]
          Length = 252

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 96/247 (38%), Gaps = 28/247 (11%)

Query: 29  ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
           +SVL+       DL    PPYNL +  Q                + F +++ Y  + + W
Sbjct: 17  VSVLKTFEKGFYDLCVTSPPYNLSIEYQ--------------GSNDFRAYDDYLNWCKNW 62

Query: 89  LLACRRVLKPNGTLWV----IGSYHNIFRIG----TMLQNLNFWILNDIVWRKSN-PMPN 139
           L  C    K    L +      + H    +G     + +   +   N I+W +SN     
Sbjct: 63  LKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIVLAKECGWKYQNTIIWNESNISRRT 122

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
             G   Q +    I    +P      F  +  K   +   +  +  +   +G      + 
Sbjct: 123 AWGSWLQASAPYAI----APVELIVVFYKNEYKRQKQTSTISKEEFLLYTNGLWSFSGES 178

Query: 200 GEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E++++Y 
Sbjct: 179 KKRLKHPAPFPRELPKRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEIEKEYC 238

Query: 259 DIATKRI 265
           +++ KRI
Sbjct: 239 ELSKKRI 245


>gi|226311531|ref|YP_002771425.1| hypothetical protein BBR47_19440 [Brevibacillus brevis NBRC 100599]
 gi|226094479|dbj|BAH42921.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 431

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/251 (20%), Positives = 102/251 (40%), Gaps = 26/251 (10%)

Query: 42  LIFADPPYNLQLNGQLYRPDHSLV--DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99
           L+  DPPYN+      ++ D + +  D      +     E ++ F +A       ++ P 
Sbjct: 198 LVVTDPPYNVA-----FKSDSAELASDGRESIMNDDMPMEQFEDFLQAVFANYASIMDPK 252

Query: 100 GTLWVI--GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
             ++V    SY   F     +           +W K+    +F   +F+  HE + +A  
Sbjct: 253 AAIYVFLPSSYQREFE--NKMNEAGIVSRTQCIWVKNAFSLSFAQYKFK--HEPVFYAHL 308

Query: 158 SPKAKGYTFNYDALKAANEDV-----QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
             +A  +  +Y         +     +  + W        E  R    + +HPTQKP  L
Sbjct: 309 KGQAPAWYGDYKQTTVWKSGLPSFIEEPETVW--------EVSRGDVSKYVHPTQKPLEL 360

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
           L+  + +S+K  D++ D F GSG++    +++ R    +E+   + D+  +R   V  + 
Sbjct: 361 LAIPIGNSSKKDDVVADFFGGSGSTLMTCEQMGRICRTMELDPKFCDVIKRRYYEVTGIE 420

Query: 273 NIELTVLTGKR 283
            + LT  + ++
Sbjct: 421 PVLLTRQSARK 431


>gi|289594298|ref|YP_003482305.1| DNA methylase N-4/N-6 domain protein [Natrialba magadii ATCC 43099]
 gi|289533395|gb|ADD07743.1| DNA methylase N-4/N-6 domain protein [Natrialba magadii ATCC 43099]
          Length = 459

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 33/49 (67%), Gaps = 1/49 (2%)

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
              T PG I+LDPF G+GT+  VAK+  R FIG+++  +++ +A +RI 
Sbjct: 385 TDETNPG-IVLDPFAGAGTTCLVAKRFGRRFIGVDLNPEFVAMAQQRIG 432



 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 93/263 (35%), Gaps = 81/263 (30%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDS 71
           I EW   I +G++  VL +LP  SV  +   PPY    +  ++GQ+          + DS
Sbjct: 13  ISEWTGDIHEGDAEEVLAELPESSVHCVVTSPPYFGHRDYGVDGQI---------GLEDS 63

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV--------------------------- 104
            D+F      D  +       RRVL+ +G+ W+                           
Sbjct: 64  LDEFIE-SLVDVASE-----IRRVLRDDGSWWLNLGDSFAGSGGAGGQWGQNEHGSATRL 117

Query: 105 --IGSYHN----------------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
              G  +N                  R+   L+N  + I  D VW K N MP+    R  
Sbjct: 118 ADAGDAYNGPLNTSNIRRKSKMLVPHRVAIALENAGWIIRADAVWTKPNGMPSSAHDRLN 177

Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL-RNKDGEKLHP 205
              E +    P P    Y FN DA++  + +  +            ER  R+   ++ +P
Sbjct: 178 EKKEFVFHLVPEPH---YWFNLDAIREPHSEASL------------ERAGRHDQAKRGYP 222

Query: 206 TQKPEALLSRILVSSTK-PGDII 227
           +       SR    + K PGDI 
Sbjct: 223 SNDHSLEPSRFCHPNGKNPGDIF 245


>gi|329119560|ref|ZP_08248243.1| adenine specific DNA methylase [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464324|gb|EGF10626.1| adenine specific DNA methylase [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 552

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 37/73 (50%), Gaps = 6/73 (8%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS------FIGIEMKQ 255
           K+  T KP ALL +IL  +  P  IILD F GSGT+      L R       FIGIEM  
Sbjct: 326 KVFETPKPVALLEKILTIAASPNAIILDSFIGSGTTAHAVLNLNRKDGGNRRFIGIEMMD 385

Query: 256 DYIDIATKRIASV 268
              ++  +RI  V
Sbjct: 386 YAENVTAERIRRV 398


>gi|299067110|emb|CBJ38306.1| Putative Site-specific DNA-methyltransferase (adenine-specific)
           [Ralstonia solanacearum CMR15]
          Length = 294

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 3/74 (4%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           R  D E+ H       ++ R ++  T P DI+L PF G G+ G V+ +L R F+G+E+K+
Sbjct: 209 REHDDER-HICPLQLEVIRRGVMLWTNPDDIVLSPFMGIGSEGVVSLELGRRFVGVELKK 267

Query: 256 DYIDIATK--RIAS 267
            Y D A    R+AS
Sbjct: 268 SYYDQAAANLRLAS 281


>gi|300866569|ref|ZP_07111258.1| DNA methylase N-4/N-6 domain protein [Oscillatoria sp. PCC 6506]
 gi|300335433|emb|CBN56418.1| DNA methylase N-4/N-6 domain protein [Oscillatoria sp. PCC 6506]
          Length = 362

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 74/164 (45%), Gaps = 34/164 (20%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDAVTDSWDKFSS--F 78
           ++G + ++L++ P  S+D +   PPY    + +NG +          + D W ++     
Sbjct: 35  LQGETYALLKQFPPNSIDCVITSPPYWGHRVYINGGI---------GLEDKWQEYVKNLL 85

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWV-IG-SYHNIFRIG-------TMLQNLNFWILNDI 129
           E +D          +R++KP G+ W+ IG +Y     +G        M+   N+ + N +
Sbjct: 86  EIFD--------EVKRIIKPTGSFWLNIGDAYQQKSMVGLPWRVALAMIDQQNWILRNSV 137

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
           +W K    P+    + +N +E +       KA  Y ++ DA+++
Sbjct: 138 IWNKVKGNPDNAKDKLRNIYEHVFHFV---KADRYFYDVDAIRS 178



 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           LH +  PE L    ++++     I+LDPF G+GT+  VA +L R  IGI++  +Y+ +A 
Sbjct: 296 LHFSPYPEDLCKIPILATCPQAGIVLDPFAGTGTTNQVAFQLGRRSIGIDISGEYLTVAR 355

Query: 263 KRIA 266
           +R +
Sbjct: 356 ERCS 359


>gi|22091186|ref|NP_666000.1| M.PhiCh1-III [Natrialba phage PhiCh1]
 gi|22003507|gb|AAM88756.1|AF440695_82 putative N4-cytosine methyltransferase [Natrialba phage PhiCh1]
          Length = 448

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 33/49 (67%), Gaps = 1/49 (2%)

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
              T PG I+LDPF G+GT+  VAK+  R FIG+++  +++ +A +RI 
Sbjct: 374 TDETNPG-IVLDPFAGAGTTCLVAKRFGRRFIGVDLNPEFVAMAQQRIG 421



 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 93/263 (35%), Gaps = 81/263 (30%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDS 71
           I EW   I +G++  VL +LP  SV  +   PPY    +  ++GQ+          + DS
Sbjct: 2   ISEWTGDIHEGDAEEVLAELPESSVHCVVTSPPYFGHRDYGVDGQI---------GLEDS 52

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV--------------------------- 104
            D+F      D  +       RRVL+ +G+ W+                           
Sbjct: 53  LDEFIE-SLVDVASE-----IRRVLRDDGSWWLNLGDSFAGSGGAGGQWGQNEHGSATRL 106

Query: 105 --IGSYHN----------------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
              G  +N                  R+   L+N  + I  D VW K N MP+    R  
Sbjct: 107 ADAGDAYNGPLNTSNIRRKSKMLVPHRVAIALENAGWIIRADAVWTKPNGMPSSAHDRLN 166

Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL-RNKDGEKLHP 205
              E +    P P    Y FN DA++  + +  +            ER  R+   ++ +P
Sbjct: 167 EKKEFVFHLVPEPH---YWFNLDAIREPHSEASL------------ERAGRHDQAKRGYP 211

Query: 206 TQKPEALLSRILVSSTK-PGDII 227
           +       SR    + K PGDI 
Sbjct: 212 SNDHSLEPSRFCHPNGKNPGDIF 234


>gi|315657341|ref|ZP_07910223.1| adenine-specific DNA modification methyltransferase [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
 gi|315491813|gb|EFU81422.1| adenine-specific DNA modification methyltransferase [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
          Length = 394

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 38/68 (55%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           SG   L+      L  T KP  LL  ++ ++T PGD +LD F GSGT+G  A    R F+
Sbjct: 291 SGQRELQRLGLGGLFETPKPTKLLQVLIEAATSPGDTVLDFFAGSGTTGQAAHTAGRRFV 350

Query: 250 GIEMKQDY 257
            I++++ +
Sbjct: 351 LIQLEETF 358


>gi|300764707|ref|ZP_07074698.1| hypothetical protein LMHG_11065 [Listeria monocytogenes FSL N1-017]
 gi|300514593|gb|EFK41649.1| hypothetical protein LMHG_11065 [Listeria monocytogenes FSL N1-017]
          Length = 416

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 95/231 (41%), Gaps = 34/231 (14%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           +  K  +L   DPPYN+   G   +  +  +     + + F  F  YDAF+        +
Sbjct: 186 MDGKLANLTVTDPPYNVNYEGSAGKIKNDNM-----ANEAFYIF-LYDAFS-----CMEK 234

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNAHETLI 153
            +  + +++V  +               F++    +W+K + +    GR  +Q  HE ++
Sbjct: 235 AMADDASIYVFHADTEGLNFRRAFVEAGFYLSGTCIWKKQSLV---LGRSPYQWQHEPVL 291

Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL 213
           +     K KG    Y   K +             I    +  +N D    HPT KP  LL
Sbjct: 292 YGW---KKKGKHQWYTGRKEST------------IWEFDKPKKNGD----HPTMKPILLL 332

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           +  + +S+    I+LDPF GSG++    ++  R    IE+ + ++D+   R
Sbjct: 333 AYPITNSSMSNCIVLDPFGGSGSTLIACEQTNRICHTIELDEKFVDVIVNR 383


>gi|217033446|ref|ZP_03438876.1| hypothetical protein HP9810_1g60 [Helicobacter pylori 98-10]
 gi|216944151|gb|EEC23579.1| hypothetical protein HP9810_1g60 [Helicobacter pylori 98-10]
 gi|261837709|gb|ACX97475.1| cytosine methyltransferase [Helicobacter pylori 51]
 gi|261839119|gb|ACX98884.1| DNA modification methylase [Helicobacter pylori 52]
          Length = 252

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 95/246 (38%), Gaps = 28/246 (11%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
           SVLE       DL    PPYNL +  Q                + F +++ Y  + + WL
Sbjct: 18  SVLETFEKGFYDLCVTSPPYNLSIEYQ--------------GSNDFRAYDDYLNWCKNWL 63

Query: 90  LACRRVLKPNGTLWV----IGSYHNIFRIGT----MLQNLNFWILNDIVWRKSN-PMPNF 140
             C    K    L +      + H    +G     + +   +   N I+W +SN      
Sbjct: 64  KNCYFWGKEQARLCLNVPLDTNKHGKQSLGADMIAIAKECGWKYQNTIIWNESNISRRTA 123

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G   Q +    I    +P      F  +  K   +   +  +  +   +G      +  
Sbjct: 124 WGSWLQASAPYAI----APVELIVVFYKNEYKRQKQTSTISKEEFLLYTNGLWSFSGESK 179

Query: 201 EKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E++++Y +
Sbjct: 180 KRLKHPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEIEKEYCE 239

Query: 260 IATKRI 265
           ++ KRI
Sbjct: 240 LSKKRI 245


>gi|331085743|ref|ZP_08334826.1| hypothetical protein HMPREF0987_01129 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406666|gb|EGG86171.1| hypothetical protein HMPREF0987_01129 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 418

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 107/247 (43%), Gaps = 37/247 (14%)

Query: 22  KIIKGNSI--SVLEKL-PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +++ G+S      EKL   K  +L+  DPPYN+   G   +  +   D + D  DKF +F
Sbjct: 167 RLVCGDSTLPETYEKLMEGKKANLVVTDPPYNVNYEGSAGKIQN---DNLED--DKFYNF 221

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
             + AF         + ++ + +++V  +           +   F++    +W+K + + 
Sbjct: 222 -LFAAFVNM-----EQNMERDASIYVFHADTEGLNFRRAFKAAGFYLSGTCIWKKQSLV- 274

Query: 139 NFRGRR-FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
              GR  +Q  HE +++     K  G    Y        D +  + W        +R + 
Sbjct: 275 --LGRSPYQWQHEPILFGW---KLGGKHMWY-------SDRKQSTIW------EYDRPKK 316

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
            D   +HPT KP  L++  + +S+    I+LDPF GSG++    ++  R    IE+ + Y
Sbjct: 317 ND---MHPTMKPVELVAYPIRNSSMSNCIVLDPFGGSGSTMIACEQTGRICRTIELDEKY 373

Query: 258 IDIATKR 264
            D+   R
Sbjct: 374 ADVIVHR 380


>gi|126741181|ref|ZP_01756861.1| adenine specific DNA methylase [Roseobacter sp. SK209-2-6]
 gi|126717704|gb|EBA14426.1| adenine specific DNA methylase [Roseobacter sp. SK209-2-6]
          Length = 544

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 6/61 (9%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMK 254
           E L  T KP+ L+ RIL  +T PGDI++D F GSGT+G     +       R FI +EM 
Sbjct: 322 ETLFSTPKPKRLIRRILQIATNPGDIVMDSFAGSGTTGHAVLDMNKQDGGNRQFILVEMD 381

Query: 255 Q 255
           +
Sbjct: 382 E 382


>gi|306821022|ref|ZP_07454641.1| methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304550963|gb|EFM38935.1| methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 651

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 2/62 (3%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI-DIATKRIA 266
           KPE L+  ++  +    DI+LD   GSGT+ AVA K+ R +IG+E + DYI +I  +R+ 
Sbjct: 468 KPEFLIRELISLAADKNDIVLDFHLGSGTTCAVAHKMGRRYIGVE-QMDYIQNITVERMK 526

Query: 267 SV 268
            V
Sbjct: 527 KV 528


>gi|300692137|ref|YP_003753132.1| hypothetical protein RPSI07_2502 [Ralstonia solanacearum PSI07]
 gi|299079197|emb|CBJ51868.1| hypothethical protein [Ralstonia solanacearum PSI07]
          Length = 139

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 30/44 (68%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           LHPT KP  L  R + +S++PGD++LD F GSGT+   A+K  R
Sbjct: 60  LHPTMKPAELAERAIRNSSRPGDVVLDAFGGSGTTLIAAEKAAR 103


>gi|257075994|ref|ZP_05570355.1| MthZ [Ferroplasma acidarmanus fer1]
          Length = 345

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 115/274 (41%), Gaps = 37/274 (13%)

Query: 32  LEKLPAKSVDLIFADPPYNL-QLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD-AFTRAWL 89
           ++++ ++SVDL+   PPY + ++   ++   +  +       +   +FE  +    + W 
Sbjct: 15  MKEVKSESVDLMITSPPYPMIKMWDDMFSVQNPEIAEALREENGEKAFELMNKELDKVW- 73

Query: 90  LACRRVLKPNGTLWV-IGS-----------YHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
               RVLK  G   + IG            Y N  RI     +L F  L +I+W K    
Sbjct: 74  KEVYRVLKIGGIACINIGDATRSLGGKFQIYTNHARILNYCLSLGFHALPEILWLKETNK 133

Query: 138 PN-FRGRRF--QNAHETLIWASPSPKAKGYTFNYDALKAANEDV---------QMRSDWL 185
           P+ F G       A+ TL         KGY   +   K+A E +         + R+ W 
Sbjct: 134 PDKFMGSGMLPVGAYVTLEHEYILILRKGYKREF---KSAEEKLNRQNSAFFWEERNTWF 190

Query: 186 IPI---CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS--GAV 240
                  +G  +  N    +      P  L  R++   +  GD ILDPF G+GT+  GA+
Sbjct: 191 SDKWNDLNGVFQRLNHIKVRERSGAYPIELAYRLINMFSVQGDTILDPFLGTGTTTLGAI 250

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
           A    R+ IG E+  ++ DI  +RI +++   NI
Sbjct: 251 ASA--RNSIGYEIDGNFKDIVEERIKNIKDTSNI 282


>gi|298346155|ref|YP_003718842.1| adenine-specific DNA-methyltransferase [Mobiluncus curtisii ATCC
           43063]
 gi|298236216|gb|ADI67348.1| site-specific DNA-methyltransferase (adenine-specific) [Mobiluncus
           curtisii ATCC 43063]
          Length = 394

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 38/68 (55%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           SG   L+      L  T KP  LL  ++ ++T PGD +LD F GSGT+G  A    R F+
Sbjct: 291 SGQRELQRLGLGGLFETPKPTKLLQVLIEAATSPGDTVLDFFAGSGTTGQAAHTTGRRFV 350

Query: 250 GIEMKQDY 257
            I++++ +
Sbjct: 351 LIQLEETF 358


>gi|229582710|ref|YP_002841109.1| DNA methylase N-4/N-6 domain protein [Sulfolobus islandicus
           Y.N.15.51]
 gi|228013426|gb|ACP49187.1| DNA methylase N-4/N-6 domain protein [Sulfolobus islandicus
           Y.N.15.51]
          Length = 283

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 112/282 (39%), Gaps = 47/282 (16%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I G+S + ++++   SV L+   PPY                +A  D  D F S+  Y
Sbjct: 2   RVIFGDSRN-MKEVEDNSVGLVLTSPPY---------------YNAPFDFPDLFPSYADY 45

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGS--------YHNIFRIGTMLQNLNFWILNDIVWRK 133
            +          RVL+       + +        Y  +  +  ++Q+L F     I+W+K
Sbjct: 46  LSLLNGVGKEIFRVLEEGRVAVFVTADVRIHGELYPIVADLIKIMQSLGFKYQERIIWKK 105

Query: 134 ---------------SNPMPNFRGRRFQNAHE-TLIWASPSPKAKGYTFNYDALKAANED 177
                           +P P +      N +E  L++  P    K    N +  K     
Sbjct: 106 PEGYIRISRRSGVLIQHPYPLYYYP--DNVYEDILVFKKP---GKFIPRNKEESKIDVNK 160

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
            Q R  W + +   +  L N    K +    PE L  RI+   +  GD +LDPF G+ T+
Sbjct: 161 FQ-REKWYLSVWEITNVLPNNKYSK-YTAPFPEELARRIITLYSYVGDTVLDPFAGTSTT 218

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
             VA +L+R+ IG E+  +  DI  +RI      G  ++ ++
Sbjct: 219 LKVANELKRNAIGYEIDLELKDIILERIGVNTLFGKPQIDII 260


>gi|325981246|ref|YP_004293648.1| DNA methylase N-4/N-6 domain-containing protein [Nitrosomonas sp.
           AL212]
 gi|325530765|gb|ADZ25486.1| DNA methylase N-4/N-6 domain protein [Nitrosomonas sp. AL212]
          Length = 1039

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 42/68 (61%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K +  Q  E +++R L+ +T PGD+ILDP  GSGT+  VA+K  R +I  +  +  + +
Sbjct: 511 DKTYVVQTNEIVITRCLLMTTDPGDLILDPTCGSGTTAFVAEKWGRRWITCDTSRVAVTL 570

Query: 261 ATKRIASV 268
           A +R+ + 
Sbjct: 571 AKQRLMTA 578



 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 72/163 (44%), Gaps = 33/163 (20%)

Query: 18  EWKDKIIKGNSISVLEKLPAKS-----VDLIFADPPYNLQLNGQLYRP------------ 60
           +W +++I G+S+ V+  L  K      V +I+ DPPY ++  G  ++P            
Sbjct: 218 DWSNRLIAGDSLLVMNSLLQKEGMAGQVQMIYLDPPYGIKY-GSNFQPFVNKRDVKDRKD 276

Query: 61  -----DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
                +  ++ A  D+W+      +Y  + R  LL  + +L  +G+++V  S  N+  + 
Sbjct: 277 EDLTQEPEMIKAFRDTWE--LGIHSYLTYLRDRLLLAKELLHESGSVFVQISDENLHHVR 334

Query: 116 TMLQNL----NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
            +   +    NF  L  + +RK   MP    +  +   + L+W
Sbjct: 335 EICDEIFGKDNFISL--VCFRK-KLMP-LGAKTLEQMSDFLVW 373


>gi|225869629|ref|YP_002745576.1| phage DNA methylase [Streptococcus equi subsp. equi 4047]
 gi|225699033|emb|CAW92142.1| phage DNA methylase [Streptococcus equi subsp. equi 4047]
          Length = 224

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 96/247 (38%), Gaps = 44/247 (17%)

Query: 27  NSISVLEKLPAKSVDLIFADPPY-----NLQLNGQLYRP-DHSLVDAVTDSWDKFSSFEA 80
           + + ++ + P K  DL   DPPY       Q  G+   P     V   T  W    +   
Sbjct: 8   DCMQLMARYPDKHFDLAIVDPPYFSGPEKRQYYGRKISPIGVKRVYEQTTQW----AIPG 63

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
            D F   +     RV K N  +W +  Y   F  G             I+W K N   +F
Sbjct: 64  KDYFDELF-----RVSK-NQIIWGVNYYDYPFGSGR------------IIWDKVNGSSSF 105

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
                  +   + + S    A+ + + ++ +      +Q +S     +  G+++L  K  
Sbjct: 106 -------SDCEIAYCSLHDSARLFRYMWNGM------MQGKSIAEGHVQQGNKKLNEK-- 150

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            ++HPTQKP  L   +L    K GD ILD   GS +S    K+L   ++G E+     + 
Sbjct: 151 -RIHPTQKPVNLYIWLLQKYAKTGDKILDTHVGSASSLIACKELGFDYVGCELDTHIYNK 209

Query: 261 ATKRIAS 267
           A  R+  
Sbjct: 210 AIDRLCE 216


>gi|317177078|dbj|BAJ54867.1| adenine specific DNA methyltransferase [Helicobacter pylori F16]
          Length = 255

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 95/247 (38%), Gaps = 28/247 (11%)

Query: 29  ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
           +SVLE       DL    PPYNL +  Q                + F  ++ Y  + + W
Sbjct: 17  VSVLETFEKGFYDLCVTSPPYNLSIEYQ--------------GSNDFRVYDDYLNWCKNW 62

Query: 89  LLACRRVLKPNGTLWV----IGSYHNIFRIGT----MLQNLNFWILNDIVWRKSN-PMPN 139
           L  C    K    L +      + H    +G     + +   +   N I+W +SN     
Sbjct: 63  LKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNESNISRRT 122

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
             G   Q +    I    +P      F  +  K   +   +  +  +   +G      + 
Sbjct: 123 AWGSWLQASAPYAI----APVELIVIFYKNEYKRQKQTSTISKEEFLLYTNGLWSFSGES 178

Query: 200 GEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E++++Y 
Sbjct: 179 KKRLKHPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEIEKEYC 238

Query: 259 DIATKRI 265
           +++ KRI
Sbjct: 239 ELSKKRI 245


>gi|117924618|ref|YP_865235.1| nuclease [Magnetococcus sp. MC-1]
 gi|117925871|ref|YP_866488.1| nuclease [Magnetococcus sp. MC-1]
 gi|117608374|gb|ABK43829.1| ParB domain protein nuclease [Magnetococcus sp. MC-1]
 gi|117609627|gb|ABK45082.1| ParB domain protein nuclease [Magnetococcus sp. MC-1]
          Length = 452

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 108/287 (37%), Gaps = 46/287 (16%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLY------RPDHSLVDAVTDS----WDKFS 76
           N   V+  +  +   L   DPPY +  +G  +      R   SL    +DS    WD  S
Sbjct: 189 NPEDVIRLMNGERAILFATDPPYLVDYDGTNHPGSKESRKRESLNKDWSDSYGVTWDDSS 248

Query: 77  SF-EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
              E Y+ F R+   A    ++PN   +   +      +  + + +  +    I+W K  
Sbjct: 249 QGPELYEGFIRS---AIDHAIEPNAAWYCWHASKRQAMLEAVWEKMGAFQHQQIIWNKEK 305

Query: 136 PMPNFRGRRFQNAHETL----IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
            +      ++   HE      I  +  PK  G  F             + + W I   SG
Sbjct: 306 GV--LTRSKYLWKHEPCLMGWIKGNMPPKINGAEF-------------LSTVWDIRGLSG 350

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
            ER         HPT KP    +  +    + G +  +PF GSG+     +   R    +
Sbjct: 351 EERPD-------HPTPKPLDCFAIPMRQHVERGGLCYEPFSGSGSQIMAGEMTGRRVHAM 403

Query: 252 EMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGL 298
           E+   Y+D+A KR   +Q  G I     +G ++   VA    +ERG+
Sbjct: 404 EISPVYVDVAVKRF--IQATGKIVYLDGSGGKSFEDVA----LERGI 444


>gi|300777382|ref|ZP_07087240.1| N-6 adenine-specific DNA methylase [Chryseobacterium gleum ATCC
           35910]
 gi|300502892|gb|EFK34032.1| N-6 adenine-specific DNA methylase [Chryseobacterium gleum ATCC
           35910]
          Length = 253

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 90/253 (35%), Gaps = 60/253 (23%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I + N++ ++ + P    DL   DPPY + LN      D+         WD   + + ++
Sbjct: 4   ITRENNMELMARYPDNYFDLAIVDPPYGI-LNKTKRGGDYKFNMDEYSQWDVKPNDDYFN 62

Query: 83  AFTRAWLLACRRVL---KPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP--M 137
              R   ++  +++      G LW+   Y+  F                I+W K+ P  +
Sbjct: 63  ELLR---VSKNQIIWGGNYFGQLWLKSEYNKGF----------------IIWDKNQPETL 103

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
            NF       +   + W+S    +K + F+                              
Sbjct: 104 NNF-------SMAEMAWSSLDKPSKIFRFSV----------------------------R 128

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K+  K+HPTQKP  L   +L      GD ILD   GSGT          S    E+ + Y
Sbjct: 129 KNRNKIHPTQKPVELYEWLLKMYANQGDKILDTHLGSGTIAIACYNAGLSLTACEISETY 188

Query: 258 IDIATKRIASVQP 270
              A  +I  V P
Sbjct: 189 YLKALDKIKEVIP 201


>gi|254441811|ref|ZP_05055304.1| ParB-like nuclease domain family [Octadecabacter antarcticus 307]
 gi|198251889|gb|EDY76204.1| ParB-like nuclease domain family [Octadecabacter antarcticus 307]
          Length = 398

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 89/218 (40%), Gaps = 36/218 (16%)

Query: 42  LIFADPPYNLQLNGQL-------YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           ++F DPPYN+ + G +       +R  H     +T S         + AF    L     
Sbjct: 197 MVFTDPPYNVPIVGHVSGKGKACHREFHEASGEMTRS--------GFAAFLDEVLANTAH 248

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
             +     +V   + ++  +    Q      LN  VW K+N      G  +++ HE L++
Sbjct: 249 SCRDGAISFVCMDWRHMGELLEAGQRAFDAYLNLCVWAKTN---GGMGSLYRSQHE-LVF 304

Query: 155 ASPSPKAKGYTFNYDALKAANEDVQM----RSDWLIPICSGSERLRNKDGEKL--HPTQK 208
                KA+              +VQ+    R+   +   +G    R    E+L  HPT K
Sbjct: 305 VFRKGKAQ-----------HRNNVQLGRFGRNRTNVWTYAGVNTFREGRMEELSAHPTAK 353

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P A++   ++  TK G+++LDPF G G +   A++  R
Sbjct: 354 PVAMVKDAILDVTKRGEVVLDPFLGGGATLIAAEQSGR 391


>gi|315654735|ref|ZP_07907641.1| adenine-specific DNA modification methyltransferase [Mobiluncus
           curtisii ATCC 51333]
 gi|315491199|gb|EFU80818.1| adenine-specific DNA modification methyltransferase [Mobiluncus
           curtisii ATCC 51333]
          Length = 394

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 38/68 (55%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           SG   L+      L  T KP  LL  ++ ++T PGD +LD F GSGT+G  A    R F+
Sbjct: 291 SGQRELQRLGLGGLFETPKPTKLLQVLIEAATSPGDTVLDFFAGSGTTGQAAHTAGRRFV 350

Query: 250 GIEMKQDY 257
            I++++ +
Sbjct: 351 LIQLEEPF 358


>gi|331703800|ref|YP_004400487.1| adenine specific DNA methylase [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|328802355|emb|CBW54509.1| Adenine specific DNA methylase [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 239

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 98/231 (42%), Gaps = 32/231 (13%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           + + +L  +   ++ ++F DP Y   L+   Y  +      +  S  +  + E    F R
Sbjct: 37  DGLVILNNIKDNAIPVVFFDPQYRGVLDKLSYGNEGK--RQIKRSELQQMTEEKIIHFIR 94

Query: 87  AWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
                  RVL P G L++ +  +H    I   +++ +  I++ IVW K      +R RR 
Sbjct: 95  E----MDRVLIPTGHLFLWVDKFHLCQGISDWIKDTSLSIVDMIVWDKDKMGMGYRTRR- 149

Query: 146 QNAHETLIWASPSP-KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
               E LI     P +AK      D  +  N    +R  W           + K  +K+H
Sbjct: 150 --QCEYLIVLQKKPIRAK------DVWRLRN----IRDVW-----------KEKIVDKVH 186

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           P QKP  L   ++ + + PGD+I+D   GS +      +  R FIG ++K+
Sbjct: 187 PHQKPIELQKILIQAVSNPGDVIMDVAAGSFSVLTSCIETGRLFIGTDIKE 237


>gi|260867515|ref|YP_003233917.1| putative DNA methylase [Escherichia coli O111:H- str. 11128]
 gi|257763871|dbj|BAI35366.1| putative DNA methylase [Escherichia coli O111:H- str. 11128]
 gi|323178009|gb|EFZ63591.1| DNA methylase family protein [Escherichia coli 1180]
          Length = 352

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 37/62 (59%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +K   +L +I+ +S++PGD++ D F GSG++   A  L R   G+E++ +  +   +
Sbjct: 283 HPCEKTAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALGRRATGVELETERFEQTVR 342

Query: 264 RI 265
            +
Sbjct: 343 EV 344



 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 67/163 (41%), Gaps = 30/163 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  +  LP  SVDLI  DPPY                    + WD +++  E 
Sbjct: 11  ELINADCLEFMRSLPENSVDLIVTDPPY---------------FKVKPEGWDNQWAGDED 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++    H +     ++    F +LN I+W K  P   +
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDTEIMMRERFNVLNHIIWAK--PSGRW 112

Query: 141 RG------RRFQNAHETLIWASP-----SPKAKGYTFNYDALK 172
            G      R +  A E +++A        PK  GY     ALK
Sbjct: 113 NGCNKESLRAYFPATERILFAEHYQGPYRPKDAGYEAKGRALK 155


>gi|304390085|ref|ZP_07372039.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304326567|gb|EFL93811.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 394

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 38/68 (55%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           SG   L+      L  T KP  LL  ++ ++T PGD +LD F GSGT+G  A    R F+
Sbjct: 291 SGQRELQRLGLGGLFETPKPTKLLQVLIEAATSPGDTVLDFFAGSGTTGQAAHTAGRRFV 350

Query: 250 GIEMKQDY 257
            I++++ +
Sbjct: 351 LIQLEEPF 358


>gi|327398832|ref|YP_004339701.1| DNA methylase N-4/N-6 domain-containing protein [Hippea maritima
           DSM 10411]
 gi|327181461|gb|AEA33642.1| DNA methylase N-4/N-6 domain protein [Hippea maritima DSM 10411]
          Length = 323

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 38/66 (57%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K HP +    + +  +   T   D++LDPF GS T+G VA+ L R +I  E+K++Y++
Sbjct: 247 GIKPHPARMHPGVAAFFIEFLTDENDLVLDPFAGSNTTGYVAEMLNRRWIACELKKEYVE 306

Query: 260 IATKRI 265
            +  R 
Sbjct: 307 QSKIRF 312


>gi|186682864|ref|YP_001866060.1| DNA methylase N-4/N-6 domain-containing protein [Nostoc punctiforme
           PCC 73102]
 gi|186465316|gb|ACC81117.1| DNA methylase N-4/N-6 domain protein [Nostoc punctiforme PCC 73102]
          Length = 355

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 38/63 (60%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           KLH    PE +    ++++     ++LDPF G+GT+  VA +L RS IGI++  +YI  A
Sbjct: 288 KLHFAPYPEDICKLPILATCPQSGVVLDPFTGTGTTNLVAFQLGRSSIGIDISGEYITAA 347

Query: 262 TKR 264
            +R
Sbjct: 348 HER 350



 Score = 43.1 bits (100), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 70/163 (42%), Gaps = 30/163 (18%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQ---LNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            ++ +S ++L+  PA  +D +   PPY  Q   +NG +          + + W      E
Sbjct: 27  FLQADSYALLKLFPADCIDCVITSPPYWGQRAYINGGI---------GLEEKW------E 71

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWV-IGSYHN-------IFRIGTMLQNLNFWIL-NDIV 130
            Y           +R+LKP+G+ W+ +G  +         +R+   + +   WIL N ++
Sbjct: 72  DYINNLLGIFCEVKRILKPSGSFWLNLGDTYQRKSLIGIPWRVALAMSDKQGWILRNSVI 131

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
           W K    P+    + +N +E +       K   Y ++ DA+++
Sbjct: 132 WNKVKGAPDNAKDKLRNVYEPVFHFV---KTDRYFYDVDAIRS 171


>gi|169830638|ref|YP_001716620.1| putative RNA methylase [Candidatus Desulforudis audaxviator MP104C]
 gi|169637482|gb|ACA58988.1| putative RNA methylase [Candidatus Desulforudis audaxviator MP104C]
          Length = 258

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 204 HPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           HP   P  L  R++ +   K G ++LDPF GSG++   A +   + +G E+   YIDIA 
Sbjct: 28  HPAMFPSRLTDRLVEIFGRKGGGLVLDPFMGSGSTLYSAYRHGLASVGFELSAGYIDIAR 87

Query: 263 KRIASV 268
           +R+A++
Sbjct: 88  QRLAAL 93


>gi|121610449|ref|YP_998256.1| DNA methylase N-4/N-6 domain-containing protein [Verminephrobacter
           eiseniae EF01-2]
 gi|121555089|gb|ABM59238.1| DNA methylase N-4/N-6 domain protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 331

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 64/306 (20%), Positives = 119/306 (38%), Gaps = 73/306 (23%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD-HSLVDAVTDSWDKFSSFEAYDAF 84
            +S+ +L +LP  S++L+   PP+ LQ        D H  +D +T    +F++       
Sbjct: 24  ADSLDMLRQLPDNSINLVMTSPPFALQRQKDYGNKDQHEYIDWLT----EFATL------ 73

Query: 85  TRAWLLACRRVLKPNGTLWV-----------IGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                    + L P+G+  +           + S +N   +      + F +  +  W  
Sbjct: 74  -------VYQKLTPDGSFVLDLGGAYQKGLPVRSLYNYRVLIRFCDEIGFHLAEEFFWFN 126

Query: 134 SNPMP------NFRGRRFQNAHETLIWASPS--PKAK------------------GYTFN 167
            + +P      N R  R +++  T+ W S +  PKA                      + 
Sbjct: 127 PSKLPSPIEWVNKRKIRAKDSVNTVWWLSKTEWPKADVSKVLAEYSERMKKLIKDPEAYY 186

Query: 168 YDALKAANEDV----------QMRSDWLIPICSGSE------RLRNKDGEKLHPTQKPEA 211
             A + +  D+           + S+ L    S SE      +L  + G + HP + P  
Sbjct: 187 SPAKRPSGHDIGSSFGKDNGGSIPSNLLQ--ISNSEANSQYLKLCKEVGIQAHPARFPAK 244

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           L    +   T+P D+++D F GS T+G V +   R ++  E  Q+Y+  +  R    QP+
Sbjct: 245 LPEFFIRYLTEPNDLVVDIFGGSNTTGHVCESEGRRWLAFEQLQEYLSASVFRFMQDQPI 304

Query: 272 GNIELT 277
            +I+ T
Sbjct: 305 ESIKTT 310


>gi|194303394|ref|YP_002014419.1| gp98 [Mycobacterium phage Porky]
 gi|194150879|gb|ACF33915.1| gp98 [Mycobacterium phage Porky]
          Length = 419

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 197 NKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           N+DG K+ H T KP AL+  ++   T PG ++LDPF GSGT+       +   I IE + 
Sbjct: 344 NEDGTKVAHNTVKPLALMRWLVKLVTPPGGVVLDPFAGSGTTVEACLLEKFRCIAIENEP 403

Query: 256 DYIDIATKRI 265
           DYI +  +R+
Sbjct: 404 DYIPLIEQRL 413



 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 45/114 (39%), Gaps = 19/114 (16%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G+   +L +L   SVD I  DPPY L                ++  WD   S  A+D   
Sbjct: 11  GDCRDILAELEDASVDSIVTDPPYELGF--------------MSKKWD--GSGIAFD--V 52

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
             W   C RVLKP G L   G      R+   +++  F I + I W   +  P 
Sbjct: 53  EMWE-QCLRVLKPGGHLLAFGGSRTWHRLTVAIEDAGFEIRDSIAWLYGSGFPK 105


>gi|307151130|ref|YP_003886514.1| DNA methylase N-4/N-6 domain-containing protein [Cyanothece sp. PCC
           7822]
 gi|306981358|gb|ADN13239.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7822]
          Length = 329

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP + P  L +  +   T PGD +LDPF GS T+G  A +L R ++ I+ ++ +++ +  
Sbjct: 256 HPARMPMGLPAFFIEFLTDPGDWVLDPFAGSNTTGYAAARLNRKWLAIDAEKQFVEQSKI 315

Query: 264 RI 265
           R 
Sbjct: 316 RF 317


>gi|116750281|ref|YP_846968.1| DNA methylase N-4/N-6 domain-containing protein [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699345|gb|ABK18533.1| DNA methylase N-4/N-6 domain protein [Syntrophobacter fumaroxidans
           MPOB]
          Length = 938

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 39/65 (60%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           EK++  Q     + R L+ ST PGD++LDP  GSGT+  VA++  R +I I+  +  + +
Sbjct: 432 EKIYAVQSGIKAVQRCLLMSTDPGDLVLDPTCGSGTTAYVAEQWGRRWITIDTSRVALAL 491

Query: 261 ATKRI 265
           A  RI
Sbjct: 492 ARARI 496


>gi|51980192|ref|YP_077259.1| Cytosine methylase, similar to N4-cytosine methylase [Sulfolobus
           virus STSV1]
 gi|51890325|emb|CAH04249.1| Cytosine methylase, similar to N4-cytosine methylase [Sulfolobus
           virus STSV1]
          Length = 297

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 113/265 (42%), Gaps = 37/265 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF---- 78
           I+ G+S + ++++   SV L+   PPY    N     PD      +   +D+F       
Sbjct: 7   IVFGDSRN-MKEISDGSVHLVVTSPPY---FNAPFDYPD------LFKDYDEFLGLIRDV 56

Query: 79  --EAYDAFTRAWLLAC--RRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
             E Y        +AC   + ++ NG L+ + +  +I RI  M++   F   + I+W+K 
Sbjct: 57  ARELYRVLAEG-RIACFVTQDVRINGKLYPVTA--DILRI--MMEE-GFTYRDRIIWKKP 110

Query: 135 NPMPNFRGRR-FQNAHETLIWASPSP-------KAKG---YTFNYDALKAANEDVQM--R 181
                   R   Q  H   ++  P           KG   Y  N   L+++  D+Q   R
Sbjct: 111 EGYVRISRRSGVQLQHPYPMYFYPDNIYEEILIMQKGEYKYPKNKAELESSRIDIQEFNR 170

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
             W + +   +  L  K   +      PE +  R++   +  G+ +LDPF GS T+  VA
Sbjct: 171 EKWYLSVWEITNVLPVKGRIEEGIAAFPEEIPYRLIKLFSYVGETVLDPFMGSATTLKVA 230

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIA 266
            +LRR  +G E+  + +D+  K++ 
Sbjct: 231 VELRRKAVGYEIDLELLDVVKKKLG 255


>gi|254436061|ref|ZP_05049568.1| DNA methylase [Nitrosococcus oceani AFC27]
 gi|207089172|gb|EDZ66444.1| DNA methylase [Nitrosococcus oceani AFC27]
          Length = 256

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 96/250 (38%), Gaps = 61/250 (24%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYN--------------LQLNGQLYR-PDHSLV 65
           D+ IK + +  L +L   SV   F DP Y                QL  Q+ + P+ ++ 
Sbjct: 43  DRKIKMDGLKFLGRLVDNSVPAAFFDPQYRGVMDKLKYGNEGSRQQLRAQMKQMPEETIF 102

Query: 66  DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNLNFW 124
           D V++                       RVL P+G L++ I  +H      +        
Sbjct: 103 DFVSE---------------------IARVLCPSGHLFLWIDKFHLCEGTSSWFDGTPMK 141

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP-KAKGYTFNYDALKAANEDVQMRSD 183
            ++ I W K      +R RR     E L+ A   P +AKG   N+       E  Q    
Sbjct: 142 TVDLITWDKERIGMGYRSRR---KAEYLLVAQKKPVRAKGVWTNHSIPDVYQEKFQ---- 194

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
                         +D    HP  KP  L ++++ + T  GD+++DP  GS +  A A++
Sbjct: 195 --------------RDMSFAHP--KPIGLQAKLIDAVTNSGDVVIDPAAGSFSVLAAAQQ 238

Query: 244 LRRSFIGIEM 253
             R F+G ++
Sbjct: 239 TGRKFLGCDI 248


>gi|240143545|ref|ZP_04742146.1| prophage LambdaMc01, DNA methyltransferase [Roseburia intestinalis
           L1-82]
 gi|257204476|gb|EEV02761.1| prophage LambdaMc01, DNA methyltransferase [Roseburia intestinalis
           L1-82]
          Length = 480

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 26/148 (17%)

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
           +++   F + + IVW K  P     G  +++ HE  ++ S   KAK     +D  K    
Sbjct: 315 IIEKSGFGVRSMIVWDKETPG---MGVGWRSQHELCLFGSRG-KAK-----FDGHKGYGN 365

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
            ++         CS S       G +LHPTQKP  L+  IL  +      + DPF GSGT
Sbjct: 366 VLR---------CSRS-------GNELHPTQKPVELMEMIL-DNMDFVKTVYDPFGGSGT 408

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           + A A+K   +   +E+   Y D+  KR
Sbjct: 409 TLAAAEKTGHTAYLMELTPGYTDVIVKR 436


>gi|256395961|ref|YP_003117525.1| RNA methylase [Catenulispora acidiphila DSM 44928]
 gi|256362187|gb|ACU75684.1| putative RNA methylase [Catenulispora acidiphila DSM 44928]
          Length = 305

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 38/64 (59%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           + HP +   A+ +  + S T+PGD+++DP  G GT+   A  L R  IG+E ++ + D+A
Sbjct: 36  EAHPAKMFPAIAAHAIASYTRPGDLVVDPMCGIGTTLVEAMHLDRMAIGVEYEKRWADLA 95

Query: 262 TKRI 265
            + +
Sbjct: 96  VRNV 99


>gi|300908061|ref|ZP_07125535.1| type III restriction/modification enzyme [Lactobacillus reuteri
           SD2112]
 gi|183398031|gb|ACC62481.1| adenine specific DNA methylase Mod [Lactobacillus reuteri]
 gi|300894793|gb|EFK88141.1| type III restriction/modification enzyme [Lactobacillus reuteri
           SD2112]
          Length = 668

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 2/78 (2%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           G++RL    G +L   +KPE LL  I+   +   D ++D F GSG++ A A K+ R FI 
Sbjct: 465 GNDRLEG--GVELRNGKKPEKLLKNIIKYFSNKNDYVMDFFAGSGSTLATAMKMSRKFIA 522

Query: 251 IEMKQDYIDIATKRIASV 268
           IE   + I    KR+ +V
Sbjct: 523 IEQINEQIIKINKRLNNV 540


>gi|297585281|ref|YP_003701061.1| DNA methylase N-4/N-6 domain-containing protein [Bacillus
           selenitireducens MLS10]
 gi|297143738|gb|ADI00496.1| DNA methylase N-4/N-6 domain protein [Bacillus selenitireducens
           MLS10]
          Length = 413

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 94/229 (41%), Gaps = 34/229 (14%)

Query: 37  AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
            +  +L+  DPPYN+  + +          A +   DK    + Y    +A+    + V+
Sbjct: 185 GEEANLVVTDPPYNVNYSSK----------AGSIQNDKQEDGDFYSFLLKAYQ-NMKTVM 233

Query: 97  KPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNAHETLIWA 155
             + +++V  +    +      ++  F++    +W K + +    GR  +Q  HE +++ 
Sbjct: 234 AKDASIYVFHADTEGYNFRKAFKDAGFYLSGVCIWAKQSLV---LGRSPYQWKHEPVLFG 290

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
                     +  D       D +  + W     S S+         LHPT KP AL + 
Sbjct: 291 ----------WRQDGKHEWYGDRKQSTLWHFDRPSKSD---------LHPTMKPVALCAY 331

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            + +S+    I+LDPF GSG++    ++  R    IE+   Y D+  KR
Sbjct: 332 PIQNSSLSNCIVLDPFGGSGSTMMACEQTNRIARLIELDPKYADVIVKR 380


>gi|16802514|ref|NP_463999.1| hypothetical protein lmo0470 [Listeria monocytogenes EGD-e]
 gi|224502230|ref|ZP_03670537.1| hypothetical protein LmonFR_06869 [Listeria monocytogenes FSL
           R2-561]
 gi|16409847|emb|CAC98549.1| lmo0470 [Listeria monocytogenes EGD-e]
          Length = 209

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 36/71 (50%)

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           +K    LHPTQKP AL   ++ + T  G ++L    GSGT+        R +IG E    
Sbjct: 129 DKQKSSLHPTQKPVALFEYLIKTYTNEGGLVLYNCMGSGTTAIACLNTNRKYIGFETDVG 188

Query: 257 YIDIATKRIAS 267
           + + +  RIA+
Sbjct: 189 HYESSLSRIAN 199


>gi|77163949|ref|YP_342474.1| DNA methylase N-4/N-6 [Nitrosococcus oceani ATCC 19707]
 gi|76882263|gb|ABA56944.1| DNA methylase N-4/N-6 [Nitrosococcus oceani ATCC 19707]
          Length = 238

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 96/250 (38%), Gaps = 61/250 (24%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYN--------------LQLNGQLYR-PDHSLV 65
           D+ IK + +  L +L   SV   F DP Y                QL  Q+ + P+ ++ 
Sbjct: 25  DRKIKMDGLKFLGRLVDNSVPAAFFDPQYRGVMDKLKYGNEGSRQQLRAQMKQMPEETIF 84

Query: 66  DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNLNFW 124
           D V++                       RVL P+G L++ I  +H      +        
Sbjct: 85  DFVSE---------------------IARVLCPSGHLFLWIDKFHLCEGTSSWFDGTPMK 123

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP-KAKGYTFNYDALKAANEDVQMRSD 183
            ++ I W K      +R RR     E L+ A   P +AKG   N+       E  Q    
Sbjct: 124 TVDLITWDKERIGMGYRSRR---KAEYLLVAQKKPVRAKGVWTNHSIPDVYQEKFQ---- 176

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
                         +D    HP  KP  L ++++ + T  GD+++DP  GS +  A A++
Sbjct: 177 --------------RDMSFAHP--KPIGLQAKLIDAVTNSGDVVIDPAAGSFSVLAAAQQ 220

Query: 244 LRRSFIGIEM 253
             R F+G ++
Sbjct: 221 TGRKFLGCDI 230


>gi|197294693|ref|YP_001799234.1| Putative methylase [Candidatus Phytoplasma australiense]
 gi|171854020|emb|CAM11989.1| Putative methylase [Candidatus Phytoplasma australiense]
          Length = 182

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 44/69 (63%), Gaps = 4/69 (5%)

Query: 203 LHPTQKPEALLSRILVSS---TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           +HPTQKP+ L ++++ S+    + G+I++ PF GS +   VAKK   ++IGIE+  DY+ 
Sbjct: 115 IHPTQKPQMLTNKLIDSAIMENQKGNILI-PFAGSDSECLVAKKKNLNYIGIEINPDYVM 173

Query: 260 IATKRIASV 268
           +  + +  +
Sbjct: 174 LINEALKKI 182


>gi|116630103|ref|YP_815275.1| ParB-like nuclease domain-containing protein [Lactobacillus gasseri
           ATCC 33323]
 gi|238854138|ref|ZP_04644485.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus gasseri 202-4]
 gi|116095685|gb|ABJ60837.1| ParB-like nuclease domain and DNA modification methylase domain
           [Lactobacillus gasseri ATCC 33323]
 gi|238833214|gb|EEQ25504.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus gasseri 202-4]
          Length = 408

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/234 (21%), Positives = 92/234 (39%), Gaps = 50/234 (21%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99
           V+L+  DPPYN+    +  +  +   D      DKF  F        A      +V+  +
Sbjct: 187 VNLVLTDPPYNVDYQSKAGKIKNDHQDD-----DKFYQF------LLAAFQNMNKVMAND 235

Query: 100 GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNAHETLIWA-SP 157
            +++V  +           ++ +F++    +W+K + +    GR  +Q  HE +++    
Sbjct: 236 ASIYVFHADTEGLNFRRAFRDADFYLSGCCIWKKQSLV---LGRSPYQWQHEPVLYGWKQ 292

Query: 158 SPKAKGYT-------FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
             K + YT       + +D  K + E                           HPT KP 
Sbjct: 293 DGKHEWYTGRKESTIWEFDRPKQSKE---------------------------HPTMKPV 325

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            LL+  +++ST     +LDPF GSG++    ++  R    +E+   Y D+   R
Sbjct: 326 PLLAYPIMNSTMSNCTVLDPFGGSGSTLIACEQTNRICYMMELDPKYCDVIVNR 379


>gi|117925345|ref|YP_865962.1| nuclease [Magnetococcus sp. MC-1]
 gi|117609101|gb|ABK44556.1| ParB domain protein nuclease [Magnetococcus sp. MC-1]
          Length = 448

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 107/287 (37%), Gaps = 46/287 (16%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLY------RPDHSLVDAVTDS----WDKFS 76
           N   V+  +  +   L   DPPY +  +G  +      R   SL    +DS    WD  S
Sbjct: 189 NPDDVIRLMNGERAILFATDPPYLVDYDGTNHPGSKESRKRESLNKDWSDSYGVTWDDSS 248

Query: 77  SF-EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
              E Y+ F RA   A    ++PN   +   +      +  + + +  +    I+W K  
Sbjct: 249 QGPELYEGFIRA---AIDHAIEPNAAWYCWHASKRQAMLEAVWEKMGAFQHQQIIWNKEK 305

Query: 136 PMPNFRGRRFQNAHETL----IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
            +      ++   HE      I  +  PK  G  F             + + W I   SG
Sbjct: 306 GV--LTRSKYLWKHEPCLMGWIKGNMPPKINGAEF-------------LSTVWDIRGLSG 350

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
            ER         HPT KP    +  +    + G +  +PF GSG+     +   R    +
Sbjct: 351 EERPD-------HPTPKPLDCFAIPMRQHVERGGLCYEPFSGSGSQIMAGEMTGRRVHAM 403

Query: 252 EMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGL 298
           E+   Y+D+A KR   +Q  G I     +G ++   +A     +RG+
Sbjct: 404 EISPVYVDVAVKRF--IQATGKIVYLDGSGGKSFDEIA----AQRGI 444


>gi|315611985|ref|ZP_07886903.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sanguinis ATCC
           49296]
 gi|315315974|gb|EFU64008.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sanguinis ATCC
           49296]
          Length = 224

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 40/68 (58%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           ++HPTQKP  L   +L +  K GD ILD   GS +S    ++L   ++G E+ ++  ++A
Sbjct: 151 RIHPTQKPVNLYLWLLRNYAKEGDKILDTHVGSASSLIACQELGFDYVGCELDKNIFNLA 210

Query: 262 TKRIASVQ 269
            +R+ + +
Sbjct: 211 QQRLDAYE 218


>gi|29565978|ref|NP_817549.1| gp100 [Mycobacterium phage Cjw1]
 gi|29424703|gb|AAN01714.1| gp100 [Mycobacterium phage Cjw1]
          Length = 187

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 19/114 (16%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G+   +L +L   SVD I  DPPY L   G+ +  D S +    + W++           
Sbjct: 25  GDCRDILAELEDASVDSIVTDPPYELGFMGKKW--DGSGIAFDVEMWEQ----------- 71

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                 C RVLKP G L   G      R+   +++  F I + I W   +  P 
Sbjct: 72  ------CLRVLKPGGHLLAFGGSRTWHRLTVAIEDAGFEIRDSIAWLYGSGFPK 119


>gi|225573267|ref|ZP_03782022.1| hypothetical protein RUMHYD_01458 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039399|gb|EEG49645.1| hypothetical protein RUMHYD_01458 [Blautia hydrogenotrophica DSM
           10507]
          Length = 417

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 105/277 (37%), Gaps = 64/277 (23%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           +  K  +L+  DPPY +              D +T   D     E Y     A+      
Sbjct: 188 MDGKKANLVVTDPPYGVSFKSS---------DGLTIQNDSMKDEEFYTFLLTAFQCMAEH 238

Query: 95  VLKPNGTLWVIGS------YHNIF-RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
            L+  G+ +V  +      +   F  IG  L  +  W+ N +V  +S+         +Q 
Sbjct: 239 -LENGGSAYVFHADTEGLNFRKAFIDIGFHLAGVCIWVKNSLVLGRSD---------YQW 288

Query: 148 AHETLIWASP--------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
            HE +++           S + +   +NYD  K                       RNK+
Sbjct: 289 QHEPVLFGWKKGGKHSWYSDRRQTTIWNYDKPK-----------------------RNKN 325

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
               HPT KP  LL   + +S++   I+LD F GSG++    ++L R    +E+ + Y  
Sbjct: 326 ----HPTSKPLDLLGYPICNSSQENAIVLDTFGGSGSTLMACEQLNRICHMMELDEKYAS 381

Query: 260 IATKRIASVQPLGNIE-LTVLTGKRTEPRVAFNLLVE 295
           +  +R   V+  G+ E + V+ G    P  A    VE
Sbjct: 382 VILRRY--VEDTGDKENVYVIRGDEQIPYSALVKEVE 416


>gi|207725436|ref|YP_002255832.1| dna modification methylase protein [Ralstonia solanacearum MolK2]
 gi|206590672|emb|CAQ37634.1| dna modification methylase protein [Ralstonia solanacearum MolK2]
          Length = 467

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           R + K G+ + HP   P AL   ++ + +  GD++ +PF GSGT+   A++  R    +E
Sbjct: 362 RHKGKIGKGIDHPAVFPVALPEFVIGAYSDAGDVVFEPFGGSGTTMLAAQRTGRLCRSVE 421

Query: 253 MKQDYIDIATKRIASVQP 270
           +  +Y+D+A +R     P
Sbjct: 422 IAPEYVDVAIQRFQQNYP 439


>gi|23015918|ref|ZP_00055682.1| COG0863: DNA modification methylase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 418

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 38/68 (55%)

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           ++D   +H TQKP   + R +++++  GD + +PF GSGT+   A+   R    +E+   
Sbjct: 324 DEDEATVHGTQKPVECMRRPILNNSAEGDAVYEPFTGSGTTVIAAETTGRVCFAMELNPA 383

Query: 257 YIDIATKR 264
           Y+D+   R
Sbjct: 384 YVDVVIGR 391


>gi|300784035|ref|YP_003764326.1| adenine-specific DNA-methyltransferase [Amycolatopsis mediterranei
           U32]
 gi|299793549|gb|ADJ43924.1| putative adenine-specific DNA-methyltransferase [Amycolatopsis
           mediterranei U32]
          Length = 345

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 34/168 (20%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSW-DKFSSFEA 80
           I+ G+    L +LP  SVD +   PPY  L+  G    P     +   D+W D  ++   
Sbjct: 12  ILIGDVRQRLRELPDASVDCVITSPPYWALRDYGH---PGQIGAEPTVDAWADTIAAVCT 68

Query: 81  YDAFTRAWLLACRRVLKPNGTLWV-IG-SYHNIFRIGTMLQNL-------------NFWI 125
             A          RVL P G LW+ +G S+    R G   ++L             + W+
Sbjct: 69  ELA----------RVLTPTGALWLNLGDSFSRHEREGAAKKSLLLGPQRVALRLTASGWL 118

Query: 126 L-NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
           L N ++W K NP P+    RF  +HE L   +   +   Y F+ DA++
Sbjct: 119 LRNQVIWAKPNPTPSSVRDRFTASHELLYLLT---RQSRYFFDLDAVR 163



 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 25/41 (60%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           +LDPF G+GT    A+   R ++GIE+ + Y  +A  R+ +
Sbjct: 296 VLDPFMGAGTVALAAETYGRDWVGIELNEAYAALAEARLTA 336


>gi|167746051|ref|ZP_02418178.1| hypothetical protein ANACAC_00746 [Anaerostipes caccae DSM 14662]
 gi|167654566|gb|EDR98695.1| hypothetical protein ANACAC_00746 [Anaerostipes caccae DSM 14662]
          Length = 422

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 60/296 (20%), Positives = 122/296 (41%), Gaps = 69/296 (23%)

Query: 20  KDKIIKGNSISVLEK---LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G++ S+ +    +  K  +L+  DPPYN+              D ++   DK +
Sbjct: 170 RHRLMCGDATSIEDVDALMDGKKANLVITDPPYNVAFESS---------DGLSIKNDKMA 220

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGS------YHNIF-RIGTMLQNLNFWILNDI 129
           + + Y+    A+       L+  G+ +V  +      +   F   G  L     W+ N +
Sbjct: 221 NDKFYEFLLSAFKNMANH-LESGGSAYVFHADTEGLNFRRAFIDAGFHLSGCCIWVKNSL 279

Query: 130 VWRKSNPMPNFRGRRFQNAHETLI---------WASPSPKAKGYTFNYDALKAANEDVQM 180
           V  +S+         +Q  HE ++         W+  + +++   +N+D  K        
Sbjct: 280 VLGRSD---------YQWQHEPVLYGFLPGKHYWSKAAGRSQTTIWNFDKPK-------- 322

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
                          +NK+    HPT KP  LL+  + +S++   II+D F GSG++   
Sbjct: 323 ---------------KNKN----HPTSKPLDLLAYPVGNSSRENAIIIDTFGGSGSTLMT 363

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
            +K  R    +E+ + Y  +  +R   V+  G+ E   +   R   ++A++ LV+ 
Sbjct: 364 CEKTNRICYTMELDEKYASVILRRY--VEDTGDAENVFVI--RNGEKLAYSDLVKE 415


>gi|259502595|ref|ZP_05745497.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus antri DSM 16041]
 gi|259169410|gb|EEW53905.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus antri DSM 16041]
          Length = 408

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 106/257 (41%), Gaps = 46/257 (17%)

Query: 40  VDLIFADPPYNLQLNGQL--YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK 97
           V+L+  DPPYN+  + +    + DH        + DKF  F        A      + + 
Sbjct: 187 VNLVLTDPPYNVDYSSKAGKIKNDHQ-------ADDKFYQF------LLAAFQNMNQAIA 233

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNAHETLIWA- 155
            + +++V  +           Q+  F++    +W+K + +    GR  +Q  HE +++  
Sbjct: 234 NDASIYVFHADTEGLNFRRAFQDAGFYLSGCCIWKKQSLV---LGRSPYQWQHEPVLYGW 290

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
               K + YT   ++           + W        E  R K   K HPT KP  LL+ 
Sbjct: 291 KKDGKHEWYTGRKES-----------TIW--------EFDRPKQS-KEHPTMKPIPLLAY 330

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR-IASVQPLGNI 274
            +++ST     +LDPF GSG++    ++  R    +E+   Y D+  +R I  V    N+
Sbjct: 331 PIMNSTMSNCTVLDPFGGSGSTLIACEQTNRICYMMELDPKYCDVIVQRYIEQVGSSKNV 390

Query: 275 EL-----TVLTGKRTEP 286
            +     T+L  K  +P
Sbjct: 391 SVERNGKTILYSKVKKP 407


>gi|219849126|ref|YP_002463559.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
           aggregans DSM 9485]
 gi|219543385|gb|ACL25123.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aggregans DSM
           9485]
          Length = 356

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 31/171 (18%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           ++ G+++ VL++LP  SVD +   PPY      +  G     D+   D V    + F   
Sbjct: 27  LLLGDALFVLKELPDSSVDCVMTSPPYWGKREYENGGIGLERDYR--DYVRHVAEIF--- 81

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWV-IG-SYH--NIF----RIGTMLQNLNFWIL-NDI 129
                      L  +RVLK  G+ W+ IG SYH  N+     R+   L +   WIL N +
Sbjct: 82  -----------LELKRVLKSTGSFWLNIGDSYHRKNLLGIPWRVAFELTDHQGWILRNAV 130

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           VW K     +    R  N +E +       ++KGY +N DA+++   + ++
Sbjct: 131 VWNKVKSGMDNTTDRLGNMYEMVFHFVK--QSKGYYYNVDAIRSTPREAKI 179



 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 39/71 (54%)

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           +  G  +H    P  L    ++++  P  ++LDPF G+GT+   A  L R  +GI++ + 
Sbjct: 284 DTQGRNVHFAPYPVDLCRIPILATCPPEGVVLDPFCGTGTTLYAALNLGRKSVGIDISRK 343

Query: 257 YIDIATKRIAS 267
           Y++I  +R A+
Sbjct: 344 YLEIVQERCAT 354


>gi|78189355|ref|YP_379693.1| putative type II DNA modification enzyme (methyltransferase)
           [Chlorobium chlorochromatii CaD3]
 gi|78171554|gb|ABB28650.1| putative type II DNA modification enzyme (methyltransferase)
           [Chlorobium chlorochromatii CaD3]
          Length = 351

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 39/67 (58%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           ++PT+K   LL  I+ +S+ P  I+LD F GSGT+   A  L+R +IGI+     I+   
Sbjct: 262 IYPTEKNSDLLDLIITTSSNPNSIVLDCFCGSGTTLKSAHFLQRQWIGIDQSPHAIEATI 321

Query: 263 KRIASVQ 269
            + + ++
Sbjct: 322 NKFSDIK 328


>gi|218441078|ref|YP_002379407.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
 gi|218173806|gb|ACK72539.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
          Length = 379

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+H    P  L    + ++  P  I+LDPF G GT+  VA  L+R  IGI++ + Y+++A
Sbjct: 312 KIHFAPYPLDLCKIPISATCPPNGIVLDPFAGIGTTMVVAHLLKRKSIGIDICRHYLELA 371

Query: 262 TKR 264
            KR
Sbjct: 372 QKR 374


>gi|255012035|ref|ZP_05284161.1| MthZ [Bacteroides fragilis 3_1_12]
 gi|313149875|ref|ZP_07812068.1| DNA methylase [Bacteroides fragilis 3_1_12]
 gi|311977222|gb|ADQ20483.1| M1.BfaI [Bacteroides fragilis]
 gi|313138642|gb|EFR56002.1| DNA methylase [Bacteroides fragilis 3_1_12]
          Length = 364

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 105/255 (41%), Gaps = 25/255 (9%)

Query: 39  SVDLIFADPPYNL-QLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK 97
           ++DL+   PPY + ++  ++    +  +    +S  + +    +    + W   C RVLK
Sbjct: 22  TIDLVVTSPPYPMIEMWDEIMAKQNPEITDNLESNPEMAFELMHRELDKVWK-ECFRVLK 80

Query: 98  PNGTLWV-IGS-----------YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN-FRGRR 144
             G L V IG            Y+N  RI      + F  L +I+WRK   +PN F G  
Sbjct: 81  VGGFLCVNIGDATRTINDNFTLYNNHSRISKACIEIGFVGLPNIIWRKQTNVPNKFMGSG 140

Query: 145 FQ--NAHETLIWASPSPKAKGYTFNYDALKAANEDV------QMRSDWLIPI--CSGSER 194
                A+ TL         KG    Y    A    +      + R+ W   +    G+++
Sbjct: 141 MLPCGAYVTLEHEWILIFRKGSKREYKKADAKLNRMKSSFFWEERNVWFSDVWEIKGTKQ 200

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
              K   +      P  +  R++   ++ GD ++DPF G+GT+   A  L R+  G E+ 
Sbjct: 201 KIQKKTSRERSAAYPFEVPYRLINMFSQKGDTVMDPFLGTGTTTQAAMLLGRNSCGYEID 260

Query: 255 QDYIDIATKRIASVQ 269
            ++  I  + I S++
Sbjct: 261 PNFETIIRESIDSLK 275


>gi|327398568|ref|YP_004339437.1| DNA methylase N-4/N-6 domain-containing protein [Hippea maritima
           DSM 10411]
 gi|327181197|gb|AEA33378.1| DNA methylase N-4/N-6 domain protein [Hippea maritima DSM 10411]
          Length = 380

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 41/71 (57%)

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
           ++++  TK GD +LDP  GSGT+    ++L R+ IGIE+  D ++ A K I       N+
Sbjct: 166 QLMLRYTKKGDWVLDPLVGSGTTLIECRRLGRNGIGIEINPDVVEKAKKLIEKEPNRFNV 225

Query: 275 ELTVLTGKRTE 285
              ++TG  T+
Sbjct: 226 TTDIITGDSTQ 236


>gi|117926107|ref|YP_866724.1| nuclease [Magnetococcus sp. MC-1]
 gi|117609863|gb|ABK45318.1| ParB domain protein nuclease [Magnetococcus sp. MC-1]
          Length = 448

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 97/263 (36%), Gaps = 42/263 (15%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLY------RPDHSLVDAVTDS----WDKFS 76
           N   V+  +  +   L   DPPY +  +G  +      R   SL    +DS    WD  S
Sbjct: 189 NPDDVIRLMNGERAILFATDPPYLVDYDGTNHPGSKESRKRESLNKDWSDSYGVTWDDSS 248

Query: 77  SF-EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
              E Y+ F RA   A    ++PN   +   +      +  + + +  +    I+W K  
Sbjct: 249 QGPELYEGFIRA---AIDHAIEPNAAWYCWHASKRQAMLEAVWEKMGAFQHQQIIWNKEK 305

Query: 136 PMPNFRGRRFQNAHETL----IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
            +      ++   HE      I  +  PK  G  F             + + W I   SG
Sbjct: 306 GV--LTRSKYLWKHEPCLMGWIKGNMPPKINGAEF-------------LSTVWDIRGLSG 350

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
            ER         HPT KP    +  +    + G +  +PF GSG+     +   R    +
Sbjct: 351 EERPD-------HPTPKPLDCFAIPMRQHVERGGLCYEPFSGSGSQIMAGEMTGRRVHAM 403

Query: 252 EMKQDYIDIATKRIASVQPLGNI 274
           E+   Y+D+A KR   +Q  G I
Sbjct: 404 EISPVYVDVAVKRF--IQATGKI 424


>gi|270055226|gb|ACZ58719.1| methyltransferase [Staphylococcus aureus]
          Length = 600

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 7/95 (7%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           +S+ +LEK     +DLI+ DPPYN+   GQ    D    D   D  D +     + +F +
Sbjct: 115 HSLYLLEKTHTNKIDLIYIDPPYNM---GQ---KDFKYNDDYVDKDDNYYH-SKWLSFMK 167

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
           + LL  +++L  +G L V   YH  F++  +L  +
Sbjct: 168 SRLLMAKKLLTEDGILAVSIDYHEGFQLKLLLDEI 202


>gi|161504452|ref|YP_001571564.1| hypothetical protein SARI_02565 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865799|gb|ABX22422.1| hypothetical protein SARI_02565 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 652

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 25/120 (20%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYR 59
           + N+LA+N+N +++F      + G+++ VL  L    A +VD+I+ DPPYN   +G +Y 
Sbjct: 95  EHNTLAVNKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY- 147

Query: 60  PDH------SLVD---------AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
           PDH      +L D         A   S    S+  A+ +F    L   R++LK  G +++
Sbjct: 148 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 207


>gi|270055448|gb|ACZ58941.1| Type III restriction-modification system methylation subunit
           [Staphylococcus aureus]
          Length = 586

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 7/95 (7%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           +S+ +LEK     +DLI+ DPPYN+   GQ    D    D   D  D +     + +F +
Sbjct: 101 HSLYLLEKTHTNKIDLIYIDPPYNM---GQ---KDFKYNDDYVDKDDNYYH-SKWLSFMK 153

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
           + LL  +++L  +G L V   YH  F++  +L  +
Sbjct: 154 SRLLMAKKLLTEDGILAVSIDYHEGFQLKLLLDEI 188


>gi|300772254|ref|ZP_07082124.1| DNA (cytosine-5-)-methyltransferase [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300760557|gb|EFK57383.1| DNA (cytosine-5-)-methyltransferase [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 216

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 31/65 (47%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K+HP QKP AL   +L    KPG  I+D  FGSG+               E+ Q+Y   
Sbjct: 142 DKIHPHQKPVALYKWLLDKYAKPGYKIIDTHFGSGSIAIACHDYGYELTACELDQEYYQS 201

Query: 261 ATKRI 265
           A  RI
Sbjct: 202 AIDRI 206


>gi|227530252|ref|ZP_03960301.1| ParB family nuclease domain and DNA-modification methylase domain
           protein [Lactobacillus vaginalis ATCC 49540]
 gi|227349825|gb|EEJ40116.1| ParB family nuclease domain and DNA-modification methylase domain
           protein [Lactobacillus vaginalis ATCC 49540]
          Length = 417

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 95/229 (41%), Gaps = 40/229 (17%)

Query: 40  VDLIFADPPYNLQLNGQL--YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK 97
           V+L+  DPPYN+  + +    + DH        + DKF  F        A      + + 
Sbjct: 187 VNLVLTDPPYNVDYSSKAGKIKNDHQ-------ADDKFYQF------LLAAFQNMNQAMA 233

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNAHETLIWA- 155
            + +++V  +           Q+  F++    +W+K + +    GR  +Q  HE +++  
Sbjct: 234 NDASIYVFHADTEGLNFRRAFQDAGFYLSGCCIWKKQSLV---LGRSPYQWQHEPVLYGW 290

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
               K + YT   ++           + W        E  R K   K HPT KP  LL+ 
Sbjct: 291 KKDGKHEWYTGRKES-----------TIW--------EFDRPKQS-KEHPTMKPIPLLAY 330

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            +++ST     +LDPF GSG++    ++  R    +E+   Y D+  +R
Sbjct: 331 PIMNSTMSNCTVLDPFGGSGSTLIACEQTNRICYMMELDPKYCDVIVQR 379


>gi|328948541|ref|YP_004365878.1| DNA methylase N-4/N-6 domain protein [Treponema succinifaciens DSM
           2489]
 gi|328448865|gb|AEB14581.1| DNA methylase N-4/N-6 domain protein [Treponema succinifaciens DSM
           2489]
          Length = 396

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 42/64 (65%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           ++PT+K   LL  I+ +S+ P  +++D F GSGT+   A++L R++IGI+  +  I++  
Sbjct: 291 VYPTEKNLDLLKLIVQTSSNPESLVMDFFCGSGTTLIAAQELGRNWIGIDKSEKAIEVTR 350

Query: 263 KRIA 266
           K+I 
Sbjct: 351 KKIT 354


>gi|46200906|ref|ZP_00207895.1| COG0863: DNA modification methylase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 422

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 38/68 (55%)

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           ++D   +H TQKP   + R +++++  GD + +PF GSGT+   A+   R  + +E+   
Sbjct: 325 DEDEATVHGTQKPVECMRRPILNNSAEGDAVYEPFAGSGTTVIAAETTGRICVAMELNPA 384

Query: 257 YIDIATKR 264
           Y D+   R
Sbjct: 385 YADVIVGR 392


>gi|315453087|ref|YP_004073357.1| adenine specific DNA methyltransferase [Helicobacter felis ATCC
           49179]
 gi|315132139|emb|CBY82767.1| adenine specific DNA methyltransferase [Helicobacter felis ATCC
           49179]
          Length = 255

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 34/65 (52%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP   P  L  R +   +  GD I DPF GSGT+   A   +R+FIGIE+   Y  ++ +
Sbjct: 187 HPAPFPRELPRRCIKLFSFVGDTICDPFSGSGTTMIEAHLNQRAFIGIELDPTYCALSYE 246

Query: 264 RIASV 268
           R   V
Sbjct: 247 RFLKV 251


>gi|300853548|ref|YP_003778532.1| putative methylase [Clostridium ljungdahlii DSM 13528]
 gi|300433663|gb|ADK13430.1| predicted methylase with a ParB-like nuclease domain [Clostridium
           ljungdahlii DSM 13528]
          Length = 414

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 101/249 (40%), Gaps = 34/249 (13%)

Query: 20  KDKIIKGNSI--SVLEKL-PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K ++I G+S   S +EKL   K  +L   DPPYN+  N    + +  ++    DS D  S
Sbjct: 168 KHRLICGDSTKTSDVEKLMNGKKANLCVTDPPYNV--NYSAGKENERVIK--NDSMDDKS 223

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E    F  +       VL      ++  +           +   F + +  VW K + 
Sbjct: 224 FHE----FLLSAFKNIYSVLDDGAGAYIFHADTEGLNFRKAFKEAGFHLSSVCVWVKQSL 279

Query: 137 MPNFRGRRFQNAHETLIWA-SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           +      +FQ  HE +++   P+ K + Y+           D +  + W     S S   
Sbjct: 280 VLGRSDYQFQ--HEPVLYGWKPTGKHRWYS-----------DRKQTTVWNFDRPSKSPD- 325

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                   HPT KP  L++  + +S+    I+ +PF GSG++    ++  R    IE+ +
Sbjct: 326 --------HPTMKPVPLIAYPIKNSSMTNCIVFEPFAGSGSTLIACEQTDRICYAIELDE 377

Query: 256 DYIDIATKR 264
            Y D+  KR
Sbjct: 378 KYCDVIVKR 386


>gi|210134461|ref|YP_002300900.1| type II R-M system methyltransferase [Helicobacter pylori P12]
 gi|210132429|gb|ACJ07420.1| type II R-M system methyltransferase [Helicobacter pylori P12]
          Length = 252

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 94/246 (38%), Gaps = 28/246 (11%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
           SVLE       DL    PPYNL +  Q                + F +++ Y  + + WL
Sbjct: 18  SVLETFEKGFYDLCVTSPPYNLSIEYQ--------------GSNDFRAYDDYLNWCKNWL 63

Query: 90  LACRRVLKPNGTLWV----IGSYHNIFRIGT----MLQNLNFWILNDIVWRKSN-PMPNF 140
             C    K    L +      + H    +G     + +   +   N I+W +SN      
Sbjct: 64  KNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAVAKECGWKYQNTIIWNESNISRRTA 123

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G   Q +    I    +P      F  +  K   +   +  +  +   +G      +  
Sbjct: 124 WGSWLQASTPYAI----APVELIVVFYKNEYKRQKQTSTISKEEFLLYTNGLWSFSGESK 179

Query: 201 EKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           + L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E++++Y +
Sbjct: 180 KCLKHPAPFPRELPRRCIQLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEIEKEYCE 239

Query: 260 IATKRI 265
           ++ KRI
Sbjct: 240 LSKKRI 245


>gi|317180068|dbj|BAJ57854.1| adenine specific DNA methyltransferase [Helicobacter pylori F32]
          Length = 252

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 95/246 (38%), Gaps = 28/246 (11%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
           SVL+       DL    PPYNL +  Q                + F +++ Y  + + WL
Sbjct: 18  SVLKTFEKGFYDLCITSPPYNLSIEYQ--------------GSNDFRAYDDYLNWCKNWL 63

Query: 90  LACRRVLKPNGTLWV----IGSYHNIFRIGT----MLQNLNFWILNDIVWRKSN-PMPNF 140
             C    K    L +      + H    +G     + +   +   N I+W +SN      
Sbjct: 64  KNCYFWGKEQARLCLNVPLDTNKHGKQSLGADMIAIAKECGWKYQNTIIWNESNISRRTA 123

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G   Q +    I    +P      F  +  K   +   +  +  +   +G      +  
Sbjct: 124 WGSWLQASAPYAI----APVELIVVFYKNEYKRQKQTSTISKEEFLLYTNGLWSFSGESK 179

Query: 201 EKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E++++Y +
Sbjct: 180 KRLKHPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEIEKEYCE 239

Query: 260 IATKRI 265
           ++ KRI
Sbjct: 240 LSKKRI 245


>gi|169830412|ref|YP_001716394.1| DNA methylase N-4/N-6 domain-containing protein [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169637256|gb|ACA58762.1| DNA methylase N-4/N-6 domain protein [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 896

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 40/64 (62%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K++  Q  + ++ R ++ +T PGD++LDP  GSGT+  VA++  R +I I+  +  + +A
Sbjct: 423 KIYVVQTDDKIVQRCILMATDPGDLVLDPTCGSGTTAYVAEQWGRRWITIDTSRVALALA 482

Query: 262 TKRI 265
             RI
Sbjct: 483 RARI 486



 Score = 37.0 bits (84), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 27/126 (21%)

Query: 19  WKDKIIKGNSISVLEKLPAKS-----VDLIFADPPYNLQLNGQLY--------------- 58
           W +++I G+S+ V+  L  +      V  I+ DPPY ++ N                   
Sbjct: 130 WSNRMILGDSLQVMASLAEREGLRGKVQCIYIDPPYGIKFNSNFQWSTTSRDVKDGNVEH 189

Query: 59  ---RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
               P+   V A  D+W       +Y  + R  L   R +L  +G+++V     N+ R+ 
Sbjct: 190 ITREPEQ--VKAFRDTWR--DGIHSYLTYLRDRLTVARDLLADSGSIFVQIGDENVHRVR 245

Query: 116 TMLQNL 121
            ++  +
Sbjct: 246 ALMDEV 251


>gi|258592788|emb|CBE69097.1| putative DNA methylase [NC10 bacterium 'Dutch sediment']
          Length = 940

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 40/65 (61%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           E+++  Q    ++ R ++ +T PGD++LDP  GSGT+  VA++  R +I I+  +  + +
Sbjct: 434 ERIYVVQTAAEVIKRCILMTTDPGDLVLDPTCGSGTTAYVAEQWGRRWITIDTSRVALAL 493

Query: 261 ATKRI 265
           A  RI
Sbjct: 494 ARARI 498



 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 32/161 (19%)

Query: 19  WKDKIIKGNSISVLEKLPAKS-----VDLIFADPPYNLQLNGQLY-----------RPDH 62
           W +++I G+S+ V+  L  +      V  IF DPPY ++ N               + DH
Sbjct: 142 WSNRMILGDSLQVMASLAEREGLRGKVQCIFFDPPYGIKFNSNFQWSTTSRDVKDGKADH 201

Query: 63  -----SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
                  V A  D+W       +Y  + R  L   R +L  +G+++V     N+ R+  +
Sbjct: 202 ITREPEQVKAFRDTWR--DGIHSYLTYLRDRLAVARDLLTDSGSIFVQIGDENVHRVRAV 259

Query: 118 LQNL----NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
           +  +    NF +L  I ++K+     F      N  + ++W
Sbjct: 260 MDEVFGEKNFVVL--ISFQKTG---GFESEFLSNTVDYVLW 295


>gi|187251367|ref|YP_001875849.1| DNA modification methylase [Elusimicrobium minutum Pei191]
 gi|186971527|gb|ACC98512.1| DNA modification methylase [Elusimicrobium minutum Pei191]
          Length = 396

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 56/269 (20%), Positives = 102/269 (37%), Gaps = 51/269 (18%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSI--SVLEKLPAKSVDLIFADPPYNLQLNGQLYR 59
           S  N+ A+ +  N     K +++ G+S      + + AK  D IF DPPY +        
Sbjct: 144 SIDNAPAVTKTGNVWLLGKHRLLCGDSTKKESFDAISAKEADFIFTDPPYGI-------- 195

Query: 60  PDHSLVDAVTDSWDKFSSF--EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
            D +   A+  S  K+     +   A  RA+    + +   +  +W    + +   +   
Sbjct: 196 -DIAKSGAIGSSGKKYKPIIGDNDTATARAFYELAKELNLKDMLIWGANYFADFLPVSRR 254

Query: 118 LQNLNFWILNDIVWRKSNPMP--NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
                 W+    VW K   M   NF       A   + W       + ++  +       
Sbjct: 255 ------WL----VWNKRGEMDSNNF-------ADGEIAWVRSDGNLRIFSHVWSGYTREG 297

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
                         S  E L+ +    +HPTQKP  +   I     +P +++ D F GSG
Sbjct: 298 --------------SHKEELKTR----IHPTQKPVGVCIDIF-KELEPFEVVFDAFMGSG 338

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           ++    +K+++  +GIE+   Y D+  +R
Sbjct: 339 STLIACEKMKKVCLGIEIDPKYCDLIIER 367


>gi|297519367|ref|ZP_06937753.1| putative methyltransferase [Escherichia coli OP50]
          Length = 66

 Score = 47.0 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/32 (62%), Positives = 27/32 (84%)

Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLN 54
          II G++++ L+KLP +SVDLIFADPPYN+  N
Sbjct: 17 IIHGDALAELKKLPTESVDLIFADPPYNIGKN 48


>gi|57242413|ref|ZP_00370351.1| type II DNA modification methyltransferase [Campylobacter
           upsaliensis RM3195]
 gi|57016698|gb|EAL53481.1| type II DNA modification methyltransferase [Campylobacter
           upsaliensis RM3195]
          Length = 268

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           H  QKP  L + ++   TK G ++LDP  G G S   A    R  +GIE+ Q +IDI  K
Sbjct: 46  HGGQKPPQLCADLIQIFTKKGQLVLDPLCGVGGSLLGAALCDREALGIEINQQWIDIY-K 104

Query: 264 RIASVQPLGNIELTVLTG 281
           ++A ++ L   E +VL G
Sbjct: 105 QVARLENLK--EFSVLLG 120


>gi|330947577|gb|EGH48133.1| Csp231I DNA methyltransferase [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 127

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 28/114 (24%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQ-----------LYRPD------------- 61
           G+ + V+  LPA SV ++  DPPY ++  G+            YR               
Sbjct: 9   GDCLYVMRSLPANSVHIVVTDPPYGIRFMGKSWDGQDIEDRAAYRASMPSHVEACGPNGG 68

Query: 62  HSLVDAVTDSWD-KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG---SYHNI 111
           H  + A    +D   +   A+ AFT  W   C RVLKP G L       +YH++
Sbjct: 69  HRSIAAEAGKYDLTPAGMRAFQAFTLDWATECLRVLKPGGHLLSFAAARTYHHM 122


>gi|167757886|ref|ZP_02430013.1| hypothetical protein CLOSCI_00217 [Clostridium scindens ATCC 35704]
 gi|167664540|gb|EDS08670.1| hypothetical protein CLOSCI_00217 [Clostridium scindens ATCC 35704]
          Length = 417

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 104/277 (37%), Gaps = 64/277 (23%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           +  K  +LI  DPPY +              D +T   D     E Y     A+      
Sbjct: 188 MDGKKANLIVTDPPYGVSFKSS---------DGLTIQNDSMKDEEFYTFLLTAFQCMAEH 238

Query: 95  VLKPNGTLWVIGS------YHNIF-RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
            L+  G+ +V  +      +   F   G  L  +  W+ N +V  +S+         +Q 
Sbjct: 239 -LENGGSAYVFHADTEGLNFRKAFIDAGFHLAGVCIWVKNSLVLGRSD---------YQW 288

Query: 148 AHETLIWASP--------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
            HE +++           S + +   +NYD  K                       RNK+
Sbjct: 289 QHEPVLFGWKKGGKHSWYSDRRQTTIWNYDKPK-----------------------RNKN 325

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
               HPT KP  LL   + +S++   IILD F GSG++    ++L R    +E+ + Y  
Sbjct: 326 ----HPTSKPLDLLGYPICNSSQENAIILDTFGGSGSTLMACEQLNRICHMMELDEKYAS 381

Query: 260 IATKRIASVQPLGNIE-LTVLTGKRTEPRVAFNLLVE 295
           +  +R   V+  G+ E + V+ G    P  A    VE
Sbjct: 382 VILRRY--VEDTGDKENVYVIRGDEQIPYSALVKEVE 416


>gi|308273683|emb|CBX30285.1| hypothetical protein N47_D30940 [uncultured Desulfobacterium sp.]
          Length = 429

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 200 GEKL--HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           GEK   H    PE L  R++       + +LDPF GSGT+   AK L R  IG E+ + Y
Sbjct: 188 GEKQNKHLAMFPEELPKRLIRMFCFEQETVLDPFSGSGTTSLAAKNLNRHSIGYEINESY 247

Query: 258 IDIATKRIASVQ 269
           + +  K++ + Q
Sbjct: 248 LPVIKKKLGTEQ 259


>gi|91204435|emb|CAJ70935.1| hypothetical protein kustb0190 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 128

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 37/58 (63%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           +L RI+ +S+   DI+ D F GSGT+ AVA+KL R +IG ++ +  I    KR+  VQ
Sbjct: 1   MLERIIKASSNENDIVADFFCGSGTTPAVAEKLGRKWIGADLGKFAIHTTRKRMIGVQ 58


>gi|119717929|ref|YP_924894.1| site-specific DNA-methyltransferase (adenine-specific)
           [Nocardioides sp. JS614]
 gi|119538590|gb|ABL83207.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nocardioides sp. JS614]
          Length = 392

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 95/229 (41%), Gaps = 37/229 (16%)

Query: 23  IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            ++G+++ VL ++P    + VDL++ DPPYN   N   Y              D F    
Sbjct: 8   FVEGDNLDVLPRVPELVGRPVDLVYIDPPYNTG-NDFAYH-------------DDFRCHA 53

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML------QNLNFWILNDIVWRK 133
           A+    R  L A R VL   G ++V    H +  +  ++      QNL   ++ ++    
Sbjct: 54  AWVEMMRPRLTAAREVLAETGAIFVSIDDHEVAHLRLLMDEVYGEQNLLAQVVVNL---- 109

Query: 134 SNPMPNFRGRRFQNAHE-TLIWASPSPKAKGYTFNYDALKAAN---EDVQMRSDWLIPIC 189
            NP     GR F  +HE  L++A  + +       ++ +  ++   E    R    +P+ 
Sbjct: 110 -NPKGRQLGRGFATSHEYLLVYARDARRTVLDAATHETVDPSDFPLESADGRRYRQLPLR 168

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKP--GDIILDPFFGSGT 236
           + +++        LH T   +    R+   +T P  G + + P FG GT
Sbjct: 169 NTNKKFNPVTARTLHFTVWGDPQTGRV---ATVPFEGAVEIGPVFGDGT 214


>gi|315586257|gb|ADU40638.1| adenine specific DNA methyltransferase [Helicobacter pylori 35A]
          Length = 422

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 98/249 (39%), Gaps = 34/249 (13%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
           SVLE       DL    PPYNL +  Q                + F +++ Y  + + WL
Sbjct: 188 SVLETFEKGFYDLCITSPPYNLSIEYQ--------------GSNDFIAYDDYLNWCKNWL 233

Query: 90  LACRRVLKPNGTLWV----IGSYHNIFRIGT----MLQNLNFWILNDIVWRKSNPMPNFR 141
             C    K    L +      + H    +G     + +   +   N I+W +SN      
Sbjct: 234 KNCYFWGKEQARLCLNVPLDTNKHGKQSLGADMIAIAKECGWKYQNTIIWNESNI----- 288

Query: 142 GRRFQNAHETLIWASP----SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
            RR   A  + + AS     +P      F  +  K   +   +  +  +   +G      
Sbjct: 289 SRR--TAWGSWLQASAPYAIAPVELIVVFYKNEYKRQKQTSTISKEEFLLYTNGLWSFSG 346

Query: 198 KDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           +  ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E++++
Sbjct: 347 ESKKRLKHPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEIEKE 406

Query: 257 YIDIATKRI 265
           Y +++ KRI
Sbjct: 407 YCELSKKRI 415


>gi|147921746|ref|YP_684432.1| putative type III restriction-modification system, methylation
           subunit [uncultured methanogenic archaeon RC-I]
 gi|110619828|emb|CAJ35106.1| putative type III restriction-modification system, methylation
           subunit [uncultured methanogenic archaeon RC-I]
          Length = 834

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 40/67 (59%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           +L+  Q    ++ R L+ +T PGDI+LDP  GSGT+  VA++  R +I  +  +  I +A
Sbjct: 413 RLYVVQTSHKVIERCLLMATDPGDIVLDPTCGSGTTAYVAEQWGRRWITCDTSRVAITLA 472

Query: 262 TKRIASV 268
            +R+ + 
Sbjct: 473 KQRLMTA 479



 Score = 40.0 bits (92), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 31/142 (21%)

Query: 19  WKDKIIKGNSISVLEKLPAKS-----VDLIFADPPYNLQLNGQLYRP------------- 60
           W +++I G+S+ V+  L  K      V +I+ DPPY ++  G  ++P             
Sbjct: 120 WSNRLIAGDSLLVMNSLLEKEGMAGKVQMIYFDPPYGIKY-GSNFQPFVNKRDVKDGKDE 178

Query: 61  ----DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
               +  +V A  D+W+      +Y  + R  LL  + +L  +G+++V  S  N+  +  
Sbjct: 179 DLTSEPEMVKAFRDTWE--LGIHSYLTYLRDRLLLAKELLSDSGSIFVQISDENLHHVRE 236

Query: 117 MLQNL----NFWILNDIVWRKS 134
           +L  +    NF  +N I ++K+
Sbjct: 237 ILDEIFGYNNF--INIITFQKT 256


>gi|260576699|ref|ZP_05844685.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sp. SW2]
 gi|259021066|gb|EEW24376.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sp. SW2]
          Length = 974

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 39/65 (60%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           EK +  Q    ++ R ++ +T PGD++LDP  GSGT+  VA++  R +I I+  +  + +
Sbjct: 429 EKTYVVQSSSKIVERCMLMTTDPGDLVLDPTCGSGTTAYVAEQWGRRWITIDTSRVAVAL 488

Query: 261 ATKRI 265
           A  R+
Sbjct: 489 ARSRL 493



 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 27/126 (21%)

Query: 19  WKDKIIKGNSISVLEKLPAKS-----VDLIFADPPYNLQLNGQLY--------------- 58
           W +++I G+S+SV+  L  +      V  I+ DPPY ++ N                   
Sbjct: 130 WSNRMISGDSLSVMASLAEREGLRGQVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGDKTH 189

Query: 59  ---RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
               P+   V A  D+W       +Y  + R  L   R +L  +G+++V     N+ R+ 
Sbjct: 190 VTREPEQ--VRAFRDTWK--DGIHSYLTYLRDRLTVARDLLSDSGSIFVQIGDENVHRVR 245

Query: 116 TMLQNL 121
            ++  +
Sbjct: 246 ALMDEV 251


>gi|226313135|ref|YP_002773029.1| hypothetical protein BBR47_35480 [Brevibacillus brevis NBRC 100599]
 gi|226096083|dbj|BAH44525.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 432

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 93/234 (39%), Gaps = 27/234 (11%)

Query: 42  LIFADPPYNLQLNGQLYRPDHS--LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99
           L+  DPPYN+      ++ D S    D      +     E ++ F          ++   
Sbjct: 198 LVVTDPPYNVA-----FKSDSSELAADGRASIMNDDMPMEQFEEFLGYTFQNYSDLMDDK 252

Query: 100 GTLWVI--GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
             ++V    SY   F   T +      +    VW K+     F   +F+  HE + +A  
Sbjct: 253 AAIYVFHPSSYQREFE--TKMNEAGIVVRTQCVWVKNAATFGFAQYKFK--HEPVFYAHL 308

Query: 158 SPKAKGY------TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
             +A  +      T  + +     E  +  S W        E  R    + +HPTQKP  
Sbjct: 309 KGQAPAWYGDRKQTTVWRSGGLLGEQQEPNSVW--------EVSRGDVSKYVHPTQKPLE 360

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           LL+  + +S++  DI++D F GSG++    +++ R    +E+   + D+  +R 
Sbjct: 361 LLAIPISNSSQKNDIVVDLFGGSGSTLMTCEQMGRICRTMELDPKFCDVIKRRF 414


>gi|317134067|ref|YP_004089978.1| DNA methylase N-4/N-6 domain protein [Ruminococcus albus 7]
 gi|315450529|gb|ADU24092.1| DNA methylase N-4/N-6 domain protein [Ruminococcus albus 7]
          Length = 317

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 78/174 (44%), Gaps = 9/174 (5%)

Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
           +Y  +++I  M +   F     + W K   + N  GR+ +N  + +I++    ++     
Sbjct: 148 NYEYLYQIKKMAEAAGFQYYAKVPWTKGTFVGN-TGRKAKNQEDMMIFSLGKARSMRPDA 206

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
             D      +     ++ ++P     +    K   ++H  +KP  L+ +IL   T  G+I
Sbjct: 207 KKDKADPTVKHYMSGANGMLPTNFNVQPPDKK--SRIHQAEKPMGLVEQILDYLTFEGEI 264

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
           +LD F GSG  G      +R  + IE  ++ I    K+I  +Q LG  + +V++
Sbjct: 265 VLDQFAGSGVVGEACINKKRGCVLIEKSKECI----KKI--IQRLGLSDCSVIS 312


>gi|218441101|ref|YP_002379430.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
 gi|218173829|gb|ACK72562.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
          Length = 267

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 96/242 (39%), Gaps = 38/242 (15%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99
           +DLI   PPYN+ +N               +S D   S++ Y  F+  W+  C R  K  
Sbjct: 38  IDLIVTSPPYNVGIN--------------YNSSDDEISYQDYLEFSGQWMSNCYRWSKTQ 83

Query: 100 GTLWV-------------IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
               +             +G+  ++ RI    Q + +   + IVW + N         + 
Sbjct: 84  ARFALNIPLDKNKGGNRSVGA--DLTRIA---QEVGWKYQSTIVWNEGNISRRTAWGSWL 138

Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQ--MRSDWLIPICSGSERLRNKDGEKL- 203
           +A    + A   P      F  D  K  N   Q  ++ +  +   +G      +  +++ 
Sbjct: 139 SASAPFVIA---PVELIVIFYKDQWKKTNGTKQSDIKREEFLEWTNGLWTFNGESKKRIG 195

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP   P  L  R +   +   D + DPF GSGT+   A + +R  IG+E+  +Y +IA  
Sbjct: 196 HPAPFPRELPYRCIKLFSYVDDWVFDPFCGSGTTLLEAYRNKRKGIGVELDLNYCEIAKT 255

Query: 264 RI 265
           R+
Sbjct: 256 RL 257


>gi|318065865|ref|YP_004123900.1| gp78 [Mycobacterium phage Wee]
 gi|315420948|gb|ADU15949.1| gp78 [Mycobacterium phage Wee]
          Length = 557

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 10/125 (8%)

Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPI------CSGSER--LRNKDGEKL-HPTQ 207
           P   A G+ +   A  A  +D    S    P+        G+ER    N+DG K+ H T 
Sbjct: 426 PRTGANGHGWGMTATGAEYDDEGGASR-FFPVFRYEAKAPGAERPSYVNEDGAKVAHNTV 484

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           KP  L+  ++   T P  ++LDPF GSGT+        +  I IE + DY+ +   R++ 
Sbjct: 485 KPLDLMRWLVRLVTPPNGVVLDPFAGSGTTAEACIHEHKRCITIEREADYLPLIVARLSK 544

Query: 268 VQPLG 272
              +G
Sbjct: 545 PIEVG 549



 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 25/58 (43%)

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +  + R W   C RVLKP G L   G      R+   +++  F + + I W   +  P
Sbjct: 204 FQDWCRLWAAECLRVLKPGGHLLAFGGTRTWHRLAAAIEDAGFELRDSIAWLYGSGFP 261


>gi|322513973|ref|ZP_08067048.1| modification methylase EcaI [Actinobacillus ureae ATCC 25976]
 gi|322120199|gb|EFX92157.1| modification methylase EcaI [Actinobacillus ureae ATCC 25976]
          Length = 375

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 38/62 (61%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +PT+K   +L  I+ SS+ P D+++D F GSGT+   A +L R++IG++   + I    K
Sbjct: 264 YPTEKNFDMLKLIIASSSNPNDLVMDCFSGSGTTLGAAFELNRNWIGMDNSLESIKAIFK 323

Query: 264 RI 265
           R 
Sbjct: 324 RF 325


>gi|291303704|ref|YP_003514982.1| DNA methylase N-4/N-6 domain-containing protein [Stackebrandtia
           nassauensis DSM 44728]
 gi|290572924|gb|ADD45889.1| DNA methylase N-4/N-6 domain protein [Stackebrandtia nassauensis
           DSM 44728]
          Length = 333

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 107/295 (36%), Gaps = 80/295 (27%)

Query: 38  KSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
           +SVDLI   PPY    +    G+ Y  D  +    T +    +  +A    TR WL    
Sbjct: 18  ESVDLIVTSPPYYGLRSYTNGGRHY--DGQIGAEPTPA----AYIDALIEATRDWL---- 67

Query: 94  RVLKPNGTLWV-------------------IGSYH----------NIFRIGTML------ 118
           RVLKP G+LWV                    G  H          + +   T+L      
Sbjct: 68  RVLKPVGSLWVNLGDAYVGGGRGGNLGGHLTGGSHTKTASTPHGTSKYPAKTLLGLPWRY 127

Query: 119 -----QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK-----------AK 162
                 +L   +  +++W K N MP     R + +HET +      +           A 
Sbjct: 128 AIRCLDDLGLILRAEVIWSKPNAMPESMTDRVRRSHETWLHFVQHQRYFAAIDGIREPAS 187

Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE-KLHPTQKPEAL--------- 212
            Y+    A + A    + R   ++  C+   RL     E    P   P  L         
Sbjct: 188 NYSRPNGAGRQARGGQKPRK--MLDTCNPLGRLPGSVWEIATQPLHIPAELNITHHAAFP 245

Query: 213 ---LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
                R++++   P   +LDPF G+GT+  VA  L R+ I ++   DY  +A  R
Sbjct: 246 LEWPRRLIIAWCPPSGTVLDPFGGTGTTALVADVLGRTGISVDASADYCRLARWR 300


>gi|300933470|ref|ZP_07148726.1| ParB family DNA methylase [Corynebacterium resistens DSM 45100]
          Length = 416

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 97/250 (38%), Gaps = 47/250 (18%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           N   V   +  KS +L+  DPPYN+              D +T   D   +   Y+ F  
Sbjct: 176 NPDDVQTLMGGKSANLVLTDPPYNVAFESS---------DGLTIRNDAMKADSFYE-FLL 225

Query: 87  AWLLACRRVLKPNGTLWVIGS------YHNIF-RIGTMLQNLNFWILNDIVWRKSNPMPN 139
           A       VL   G+ +V  +      +   F   G  L     W+ N +V  +S     
Sbjct: 226 AAFTNMAGVLDKGGSAYVFHADTEGLNFRKAFIDAGFKLSGCCIWVKNSLVLGRSP---- 281

Query: 140 FRGRRFQNAHETLIWA-SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
                +Q  HE +++      K K +            D +  + W     + ++  +N 
Sbjct: 282 -----YQWQHEPVLYGWKQGAKHKWFA-----------DRKQTTIW-----NFAKPRKNS 320

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           D    HPT KP  LL+  + +ST+   IILD F GSG++   A++  R    +E+ + Y 
Sbjct: 321 D----HPTSKPLDLLAYPIRNSTQANAIILDTFAGSGSTLMAAEETDRIAYCMELDEKYA 376

Query: 259 DIATKRIASV 268
            +  +R A  
Sbjct: 377 SVILRRYADA 386


>gi|297526129|ref|YP_003668153.1| DNA methylase N-4/N-6 domain protein [Staphylothermus hellenicus
           DSM 12710]
 gi|297255045|gb|ADI31254.1| DNA methylase N-4/N-6 domain protein [Staphylothermus hellenicus
           DSM 12710]
          Length = 339

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 110/263 (41%), Gaps = 49/263 (18%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           L  +P++SV L+   PPY +    + Y+P    +  + D ++KF      +   + W   
Sbjct: 69  LSFIPSESVHLVVNSPPYWIV---KKYKPIPGQLGVIKD-YNKF-----LEELGKVWR-E 118

Query: 92  CRRVLKPNGTLWVI----------GSYHNIFRIGTML----QNLNFWILNDIVWRK---- 133
             RVL P G L ++             H +  + + +     ++ F  L  I+W K    
Sbjct: 119 VYRVLVPGGRLIIVVGDVLLPRRKYGRHRVIPLHSDIIKQCTSIGFEYLAPIIWFKIGNV 178

Query: 134 SNPMPN---FRGRRFQ-------NAHETLIWASPSPKAKGY-TFNYDALKAANEDVQMRS 182
           S  +P    F G+ +        +    L++  P     GY + +   +K +    ++  
Sbjct: 179 SREVPGRSGFLGKPYMPNAVIKNDIEYILMFRKP-----GYRSVSRVRMKLSVIPEKLFK 233

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           +W   I     RL   +  K HP   P  L  R++   +   D +LDPF G+GT+   A 
Sbjct: 234 EWFTQIW----RLLG-ESTKHHPAPFPLELAERLIRMYSYVYDTVLDPFMGTGTTLLAAA 288

Query: 243 KLRRSFIGIEMKQDYIDIATKRI 265
           +  R+ IG+E+  +Y+  A  R+
Sbjct: 289 RTGRNSIGVEIDPEYVKYAYNRL 311


>gi|260579071|ref|ZP_05846970.1| DNA (cytosine-5-)-methyltransferase [Corynebacterium jeikeium ATCC
           43734]
 gi|258602822|gb|EEW16100.1| DNA (cytosine-5-)-methyltransferase [Corynebacterium jeikeium ATCC
           43734]
          Length = 416

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 97/244 (39%), Gaps = 35/244 (14%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           N+  V   +  KS +L+  DPPYN+              D +T   D   +   Y+ F  
Sbjct: 176 NADDVAVLMDGKSANLVLTDPPYNVAFESS---------DGLTIKNDAMKADSFYE-FLL 225

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-F 145
           A       VL   G+ +V  +            +  F +    +W K + +    GR  +
Sbjct: 226 AAFTNMAGVLDKGGSAYVFHADTEGLNFRKAFIDAGFKLSGCCIWVKDSLV---LGRSPY 282

Query: 146 QNAHETLIWA-SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
           Q  HE +++      K K +            D +  + W     + ++  +N D    H
Sbjct: 283 QWQHEPVLYGWKQGAKHKWFA-----------DRKQTTIW-----NFAKPRKNSD----H 322

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PT KP  LL+  + +ST+   IILD F GSG++   A++  R    +E+ + Y  +  +R
Sbjct: 323 PTSKPLDLLAYPIRNSTQANAIILDTFAGSGSTLMAAEQTDRIAYLMELDEKYASVILRR 382

Query: 265 IASV 268
            A  
Sbjct: 383 YAEA 386


>gi|323484105|ref|ZP_08089475.1| hypothetical protein HMPREF9474_01226 [Clostridium symbiosum
           WAL-14163]
 gi|323402547|gb|EGA94875.1| hypothetical protein HMPREF9474_01226 [Clostridium symbiosum
           WAL-14163]
          Length = 418

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 51/231 (22%), Positives = 98/231 (42%), Gaps = 34/231 (14%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           +  +  +L+  DPPYN+   G      +   D + D   KF  F  + AF         +
Sbjct: 183 MDGQKANLVVTDPPYNVNYEGTAGNIQN---DHMEDG--KFYQF-LFAAFVNM-----EQ 231

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNAHETLI 153
            ++P+ +++V  +            +  F++    +W+K + +    GR  +Q  HE ++
Sbjct: 232 SMEPDASIYVFHADTEGLNFRKAFHDAGFYLSGCCIWKKQSLV---LGRSPYQWQHEPVL 288

Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL 213
           +       KG   N+ + +      +  + W        E  R K   K HPT KP  L+
Sbjct: 289 FGW----KKGGKHNWYSNR------KQTTIW--------EFDRPKQS-KDHPTMKPVGLV 329

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           +  + +S     I+LDPF GSG++    ++  R     E+ + ++D+  +R
Sbjct: 330 AYPIQNSCMSNCIVLDPFGGSGSTLIACEQTSRICYMAELDEKFVDVIVQR 380


>gi|300114273|ref|YP_003760848.1| DNA methylase N-4/N-6 domain-containing protein [Nitrosococcus
           watsonii C-113]
 gi|299540210|gb|ADJ28527.1| DNA methylase N-4/N-6 domain protein [Nitrosococcus watsonii C-113]
          Length = 1013

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 38/63 (60%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           ++  Q  E +  R L+ ST PGD++LDP  GSGT+  VA++  R +I I+  +  + +A 
Sbjct: 395 IYVVQTNEKIPQRCLLMSTDPGDLVLDPTCGSGTTAYVAEQWGRRWITIDTSRVALALAR 454

Query: 263 KRI 265
            RI
Sbjct: 455 SRI 457



 Score = 42.7 bits (99), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 70/161 (43%), Gaps = 32/161 (19%)

Query: 19  WKDKIIKGNSISVLEKLPAKS-----VDLIFADPPYNLQLNG----------------QL 57
           W +++I G+S+ V+  L  +      V  I+ DPPY ++ N                 Q 
Sbjct: 134 WSNRMILGDSLQVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGNVQH 193

Query: 58  YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
              +   V A  D+W       +Y  + R  L   R +L  +G+++V     N+ R+  +
Sbjct: 194 ITREPEQVKAFRDTWR--DGIHSYLTYLRDRLTVARDLLTDSGSIFVQIGDENVHRVRAL 251

Query: 118 LQ----NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
           +     ++NF  +++IV++K+   P   G    N  + ++W
Sbjct: 252 MDEVFGDVNF--VSEIVFQKTGSQP---GSIIGNISDYILW 287


>gi|83309462|ref|YP_419726.1| modification methylase DpnIIB [Magnetospirillum magneticum AMB-1]
 gi|82944303|dbj|BAE49167.1| Modification methylase DpnIIB [Magnetospirillum magneticum AMB-1]
          Length = 423

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 37/68 (54%)

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           ++D   +H TQKP   + R +++++  GD + +PF GSGT+   A+   R    +E+   
Sbjct: 326 DEDEATVHGTQKPVECMRRPILNNSAEGDSVYEPFAGSGTTVIAAETTGRVCFALELNPA 385

Query: 257 YIDIATKR 264
           Y D+   R
Sbjct: 386 YADVTVGR 393


>gi|240142079|ref|YP_002966589.1| putative DNA methylase N-4/N-6 [Methylobacterium extorquens AM1]
 gi|240012023|gb|ACS43248.1| putative DNA methylase N-4/N-6 [Methylobacterium extorquens AM1]
          Length = 440

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 35/68 (51%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G  +HP + PEAL  R++  +T  G  + DP  GS T+G VA +L R FI  E    Y +
Sbjct: 362 GVPIHPARFPEALPRRVIQLTTDVGQTVYDPMAGSNTTGKVALELGRRFISSEPMLAYAE 421

Query: 260 IATKRIAS 267
            +     S
Sbjct: 422 ASAMHFDS 429


>gi|196229823|ref|ZP_03128687.1| DNA methylase N-4/N-6 domain protein [Chthoniobacter flavus
           Ellin428]
 gi|196226149|gb|EDY20655.1| DNA methylase N-4/N-6 domain protein [Chthoniobacter flavus
           Ellin428]
          Length = 1058

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           +IPI    E L+    E L+  Q    +L R ++  T PGD+++DP  GSGT+  VA++ 
Sbjct: 453 VIPITDHWESLQ-IGTELLYVVQTSSTILQRCMLMCTDPGDLVVDPTCGSGTTALVAEQW 511

Query: 245 RRSFIGIEMKQDYIDIATKRI 265
            R +I I+  +  + IA +R+
Sbjct: 512 GRRWITIDSSRVALAIARQRL 532



 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 22/124 (17%)

Query: 18  EWKDKIIKGNSISVLEKLP-----AKSVDLIFADPPYNLQLNG---------QLYRPDHS 63
           +W +++I G+S+ V+  L      A  V +I+ DPPY ++ +           +   D  
Sbjct: 185 DWSNRLILGDSLQVMTSLSRREALAGQVQMIYLDPPYGIKFSSNWQNEVGKRDVKEKDED 244

Query: 64  L------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
           L      + A  D+W       +Y  + +  LL  R +L   G+++V  S  N+ R+  +
Sbjct: 245 LSREPEMIRAYRDTW--TLGVHSYLTYLKQRLLLARELLTDTGSIFVQISDENLHRVRAV 302

Query: 118 LQNL 121
           +  +
Sbjct: 303 MDEV 306


>gi|146749645|gb|ABQ44382.1| ParB-like nuclease domain and DNA-modification methylase domain
           protein [Lactobacillus reuteri]
          Length = 402

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 90/231 (38%), Gaps = 34/231 (14%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           L    V+L+  DPPYN+    +  +  +   D      DKF  F        A       
Sbjct: 182 LSDNKVNLVLTDPPYNVDYQSKAGKIKNDHQDN-----DKFYKF------LLAAFQNMNT 230

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNAHETLI 153
            +  + +++V  +           Q+  F++    +W+K + +    GR  +Q  HE ++
Sbjct: 231 AMANDASIYVFHADTEGLNFRRAFQDAGFYLSGCCIWKKQSLV---LGRSPYQWQHEPVL 287

Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL 213
                     Y + +D         +  + W        E  R K   K HPT KP  LL
Sbjct: 288 ----------YGWKHDGKHEWYTGRKESTIW--------EFDRPKQS-KEHPTMKPIPLL 328

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           +  +++ST     +LDPF GSG++    ++  R    +E+   Y D+   R
Sbjct: 329 AYPIMNSTMSNCTVLDPFGGSGSTLIACEQTNRICYMMELDPKYCDVIVNR 379


>gi|109946809|ref|YP_664037.1| type IIS restriction enzyme M1 protein fragment 1 [Helicobacter
           acinonychis str. Sheeba]
 gi|109714030|emb|CAJ99038.1| type IIS restriction enzyme M1 protein fragment 1 [Helicobacter
           acinonychis str. Sheeba]
          Length = 90

 Score = 46.6 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 16/90 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   +  + L+KL  KSVDL   DPPYNL++                 SWD F + E 
Sbjct: 2   NKIYIEDVFAFLDKLEDKSVDLAIIDPPYNLKIA----------------SWDSFKNDEE 45

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
           +  F+ AW+      +K  G+ ++  +  N
Sbjct: 46  FLTFSYAWIDKMLPKIKDTGSFYIFNTPFN 75


>gi|153869627|ref|ZP_01999177.1| DNA modification methyltransferase [Beggiatoa sp. PS]
 gi|152073910|gb|EDN70826.1| DNA modification methyltransferase [Beggiatoa sp. PS]
          Length = 183

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           LL RI+  +T  GD +LDPF GSGT+   A  L R  IG+++ +  I +  +R+
Sbjct: 2   LLERIIHLTTDRGDTVLDPFCGSGTTLVAANLLERHAIGMDISEQAIALTQERL 55


>gi|325972192|ref|YP_004248383.1| DNA methylase N-4/N-6 domain protein [Spirochaeta sp. Buddy]
 gi|324027430|gb|ADY14189.1| DNA methylase N-4/N-6 domain protein [Spirochaeta sp. Buddy]
          Length = 932

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 40/65 (61%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +KL+  Q    ++ R ++ +T PGD++LDP  GSGT+  VA++  R +I I+  +  + +
Sbjct: 426 DKLYVVQTGTNVIQRCILMTTDPGDLVLDPTCGSGTTAYVAEQWGRRWITIDTSRVALAL 485

Query: 261 ATKRI 265
           A  RI
Sbjct: 486 ARGRI 490



 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 23/138 (16%)

Query: 5   NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKS-----VDLIFADPPYNLQLNG---- 55
           N  A  E       W +++I G+S+ V+  L  +      V  I+ DPPY ++ N     
Sbjct: 116 NEAAKTEFYQHDAHWSNRMILGDSLYVMASLAEREGLRGKVQCIYIDPPYGIKFNSNFQW 175

Query: 56  ------------QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW 103
                       Q    +   V A  D+W       +Y  F R  L   R +L  +G+++
Sbjct: 176 STTSREVRDGNIQHITRESEQVKAFRDTWR--YGVHSYLTFLRERLTISRELLSDSGSIF 233

Query: 104 VIGSYHNIFRIGTMLQNL 121
           +     N+ RI  ++  +
Sbjct: 234 IQIGEENVHRIRVLMDEI 251


>gi|258514663|ref|YP_003190885.1| adenine-specific DNA methylase [Desulfotomaculum acetoxidans DSM
           771]
 gi|257778368|gb|ACV62262.1| adenine-specific DNA methylase [Desulfotomaculum acetoxidans DSM
           771]
          Length = 540

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 35/62 (56%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           +KP  L++  +   T PGD++LDPF GSG +   A KL+R   G+++      IAT  I 
Sbjct: 27  RKPHNLVNAYIKHFTGPGDLVLDPFMGSGVTVIEALKLKRRVCGVDINPVAHFIATNTIV 86

Query: 267 SV 268
            V
Sbjct: 87  PV 88


>gi|207109898|ref|ZP_03244060.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
          pylori HPKX_438_CA4C1]
          Length = 53

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/39 (48%), Positives = 27/39 (69%)

Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR 59
          + II+G+ +  L+  P +SVD IFADPPY +Q  G+L R
Sbjct: 9  NTIIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKR 47


>gi|254414217|ref|ZP_05027984.1| DNA methylase [Microcoleus chthonoplastes PCC 7420]
 gi|196178892|gb|EDX73889.1| DNA methylase [Microcoleus chthonoplastes PCC 7420]
          Length = 326

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 126/322 (39%), Gaps = 57/322 (17%)

Query: 5   NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL----------- 53
           +SLA N N  +I      I+  +    L ++P  S+  +  DPPY ++            
Sbjct: 2   HSLAFNYNSETI--GGSFILYADCFDWLAQIPENSIHGVVTDPPYGVKEYDIEQIKKRSN 59

Query: 54  -NGQLYRPDHSLVDAVTDSWDKFSSFEAYD-----AFTRAWLLACRRVLKPNGTLWVIGS 107
             G ++R   S          +F++    +      F   W     RVL+P G ++V  +
Sbjct: 60  GKGGIWRIPPSYDGHQRSPLPRFTALTQKERTTLKCFFIEWSKLVVRVLRPGGHVFVASN 119

Query: 108 YHNIFRIGTMLQNLNFWILND--IVWRKS--NPMPNFRG-RRFQNAHETLIWASPSPKAK 162
                     L  L F  L +  + +R      +   RG  R +NA +     S  P+  
Sbjct: 120 --------AFLSQLVFSALVEGGLEFRGELIRLVRTLRGGDRPKNAEQEFPHVSSMPR-- 169

Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL------------------H 204
           G    +  L+         SD L    +G  R R  DG                     H
Sbjct: 170 GCYEPWGILRKPIPSGMKVSDCLREFQTGGLR-RTPDGNPFNDVIFSERTPRQEREIANH 228

Query: 205 PTQKPEALLSRILVSSTKPGD-IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           P+ KP++ L +++ +    G+ I++DPF GSG++ A A+ +    IGIE   +Y  ++  
Sbjct: 229 PSLKPQSFLRQLVHAVLPLGEGILIDPFMGSGSTVAAAEAVGVCCIGIERYTEYYQMS-- 286

Query: 264 RIASVQPLGNIELTVLTGKRTE 285
           RIA  Q L  + ++    K TE
Sbjct: 287 RIAIPQ-LAALNVSPHLQKSTE 307


>gi|15644891|ref|NP_207061.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter pylori
           26695]
 gi|2313355|gb|AAD07329.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter pylori
           26695]
          Length = 252

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 95/247 (38%), Gaps = 28/247 (11%)

Query: 29  ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
           +SVLE       DL     PYNL +  Q                D F +++ Y  + + W
Sbjct: 17  VSVLETFEKGFYDLCITSLPYNLSIEYQ--------------GSDDFRAYDDYLNWCKNW 62

Query: 89  LLACRRVLKPNGTLWV----IGSYHNIFRIGT----MLQNLNFWILNDIVWRKSN-PMPN 139
           L  C    K    L +      + H    +G     + +   +   N I+W +SN     
Sbjct: 63  LKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNESNISRRT 122

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
             G   Q +    I    +P      F  +  K   +   +  +  +   +G      + 
Sbjct: 123 AWGSWLQASAPYAI----APVELIVVFYKNEYKRQKQTSTISKEEFLLYTNGLWNFSGES 178

Query: 200 GEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G++++++Y 
Sbjct: 179 KKRLKHPAPFPRELPRRCIQLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLKIEKEYC 238

Query: 259 DIATKRI 265
           +++ KRI
Sbjct: 239 ELSKKRI 245


>gi|154151876|ref|YP_001405494.1| DNA methylase N-4/N-6 domain-containing protein [Candidatus
           Methanoregula boonei 6A8]
 gi|154000428|gb|ABS56851.1| DNA methylase N-4/N-6 domain protein [Methanoregula boonei 6A8]
          Length = 334

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 36/62 (58%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP   P  L +R++   +  GD +LDPF G+GT+   A    R+ IGIE+   Y++ A +
Sbjct: 246 HPAPYPVELSTRLIRMFSFVGDTVLDPFVGTGTTMLSAAATGRNSIGIEIDPRYLEYAYQ 305

Query: 264 RI 265
           R+
Sbjct: 306 RL 307


>gi|227544628|ref|ZP_03974677.1| ParB family nuclease domain and DNA-modification methylase domain
           protein [Lactobacillus reuteri CF48-3A]
 gi|300909456|ref|ZP_07126917.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus reuteri SD2112]
 gi|227185394|gb|EEI65465.1| ParB family nuclease domain and DNA-modification methylase domain
           protein [Lactobacillus reuteri CF48-3A]
 gi|300893321|gb|EFK86680.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus reuteri SD2112]
          Length = 408

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 90/231 (38%), Gaps = 34/231 (14%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           L    V+L+  DPPYN+    +  +  +   D      DKF  F        A       
Sbjct: 182 LSDNKVNLVLTDPPYNVDYQSKAGKIKNDHQDN-----DKFYKF------LLAAFQNMNT 230

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNAHETLI 153
            +  + +++V  +           Q+  F++    +W+K + +    GR  +Q  HE ++
Sbjct: 231 AMANDASIYVFHADTEGLNFRRAFQDAGFYLSGCCIWKKQSLV---LGRSPYQWQHEPVL 287

Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL 213
                     Y + +D         +  + W        E  R K   K HPT KP  LL
Sbjct: 288 ----------YGWKHDGKHEWYTGRKESTIW--------EFDRPKQS-KEHPTMKPIPLL 328

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           +  +++ST     +LDPF GSG++    ++  R    +E+   Y D+   R
Sbjct: 329 AYPIMNSTMSNCTVLDPFGGSGSTLIACEQTNRICYMMELDPKYCDVIVNR 379


>gi|167908523|ref|ZP_02495728.1| phage-encoded modification methylase [Burkholderia pseudomallei
           NCTC 13177]
          Length = 112

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 12/86 (13%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYN---LQLNGQLYRPDHSLVDAVTDSWDKFSSFE---- 79
           +++++   LP  S+D++F DPPY+   L  + +   P    +++ T +   ++ FE    
Sbjct: 2   DALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSTKYINSGTKT--VYTDFESDNM 59

Query: 80  ---AYDAFTRAWLLACRRVLKPNGTL 102
              A+  +  AWL  CRR LKP G L
Sbjct: 60  DQRAWAFWCHAWLSECRRALKPGGLL 85


>gi|149914819|ref|ZP_01903349.1| DNA methylase N-4/N-6 [Roseobacter sp. AzwK-3b]
 gi|149811612|gb|EDM71447.1| DNA methylase N-4/N-6 [Roseobacter sp. AzwK-3b]
          Length = 975

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 40/68 (58%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K++  Q    ++ R L+ +T PGD++LDP  GSGT+  VA++  R +I I+  +  + +A
Sbjct: 420 KVYVVQTSTKIIERCLLMTTDPGDLVLDPTCGSGTTAYVAEQWGRRWITIDTSRVALALA 479

Query: 262 TKRIASVQ 269
             RI   +
Sbjct: 480 RARIMGAK 487


>gi|256847824|ref|ZP_05553269.1| DNA methylase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715513|gb|EEU30489.1| DNA methylase [Lactobacillus coleohominis 101-4-CHN]
          Length = 408

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 93/228 (40%), Gaps = 38/228 (16%)

Query: 40  VDLIFADPPYNLQLNGQL--YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK 97
           V+L+  DPPYN+  + +    + DH        + DKF  F        A      + + 
Sbjct: 187 VNLVLTDPPYNVDYSSKAGKIKNDHQ-------ADDKFYQF------LLAAFQNMNQAMA 233

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNAHETLIWAS 156
            + +++V  +           Q+  F++    +W+K + +    GR  +Q  HE +++  
Sbjct: 234 NDASIYVFHADTEGLNFRRAFQDAGFYLSGCCIWKKQSLV---LGRSPYQWQHEPVLYGW 290

Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
              K  G    Y   K +       + W        E  R K   K HPT KP  LL+  
Sbjct: 291 ---KKDGKHEWYTGRKES-------TIW--------EFDRPKQS-KEHPTMKPIPLLAYP 331

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           +++ST     +LDPF GSG++    ++  R    +E+   Y D+   R
Sbjct: 332 IMNSTMSNCTVLDPFGGSGSTLIACEQTNRICYMMELDPKYCDVIVNR 379


>gi|209963408|ref|YP_002296323.1| DNA methylase, putative [Rhodospirillum centenum SW]
 gi|209956874|gb|ACI97510.1| DNA methylase, putative [Rhodospirillum centenum SW]
          Length = 461

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 37/71 (52%)

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           R + +  E  HP   P AL   IL +    GD++ +PF GSGT+    ++  R    +++
Sbjct: 358 RHKARGIEVEHPAVFPVALPELILNAYADAGDVVYEPFSGSGTTLIAGERTGRRVCAVDL 417

Query: 254 KQDYIDIATKR 264
              Y+D+A +R
Sbjct: 418 APAYVDVAVRR 428


>gi|319792670|ref|YP_004154310.1| DNA methylase n-4/n-6 domain protein [Variovorax paradoxus EPS]
 gi|315595133|gb|ADU36199.1| DNA methylase N-4/N-6 domain protein [Variovorax paradoxus EPS]
          Length = 388

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 30/45 (66%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           P  L+   +++    G  +LD FFGSGT+G VA+ L R+FIGIE+
Sbjct: 322 PRKLIEPCILAGCPVGGTVLDIFFGSGTTGEVAQALGRNFIGIEL 366



 Score = 42.7 bits (99), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
           +R+   LQ+  +W+  D++W K NPMP     R   AHE +   +   K++ Y ++++A+
Sbjct: 142 WRLAFALQDAGWWLRQDVIWHKPNPMPESIRDRCTKAHEYIFLLA---KSERYYYDFEAM 198

Query: 172 K 172
           +
Sbjct: 199 Q 199


>gi|224369435|ref|YP_002603599.1| MthZ [Desulfobacterium autotrophicum HRM2]
 gi|223692152|gb|ACN15435.1| MthZ [Desulfobacterium autotrophicum HRM2]
          Length = 360

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 109/275 (39%), Gaps = 45/275 (16%)

Query: 37  AKSVDLIFADPPYNL-QLNGQLYRPDHSLVDAVTDSWDKFSSFEA-YDAFTRAWLLACRR 94
           + SV+L+   PPY + ++   L+   ++ + A         +FE  +    + W     R
Sbjct: 21  SNSVNLVVTSPPYPMVEMWDDLFCSQNADIKAALSQGKGMQAFEMMHRKLDQVWQ-ETYR 79

Query: 95  VLKP---------NGTLWVIGS---YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN-FR 141
           +L P         + T  V G    Y N  RI T + NL F  +  I+WRK    PN F 
Sbjct: 80  ILAPGSFACINIGDATRTVDGVFQLYPNHARILTAMVNLGFSPMPLILWRKQTNAPNKFM 139

Query: 142 GRRFQNA-------HETLIWASPSPKAKGYTFNYDALKAANEDVQMR------------- 181
           G     A       HE ++      K +         K+A E    R             
Sbjct: 140 GSGMLPAGAYVTLEHEYVLILRKGDKRQ--------FKSAGEKENRRQSALFWEERNQWF 191

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
           SD    +    ++L +K   K      P +L  R++   +   DI++DPF G GT+   A
Sbjct: 192 SDVWFDLKGTVQKLEDKAVRK-RSGSFPFSLPYRLINMFSVKQDIVVDPFLGLGTTTLAA 250

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
               R+ +G E+   + +  ++RI   +PL N E+
Sbjct: 251 MAAGRNSLGFEVDPGFWEPISQRIERSKPLLNQEI 285


>gi|170079551|ref|YP_001736185.1| DNA methylase [Synechococcus sp. PCC 7002]
 gi|169887220|gb|ACB00930.1| DNA methylase [Synechococcus sp. PCC 7002]
          Length = 937

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 41/69 (59%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           EK++  Q    +  R ++ +T PGD++LDP  GSGT+  VA++  R +I I+  +  + +
Sbjct: 428 EKIYVVQGNPKITERCILMATDPGDLVLDPTCGSGTTAYVAEEWGRRWITIDTSRVALAL 487

Query: 261 ATKRIASVQ 269
           A  R+ S +
Sbjct: 488 ARTRLMSAK 496


>gi|83591581|ref|YP_425333.1| DNA methylase N-4/N-6 [Rhodospirillum rubrum ATCC 11170]
 gi|83574495|gb|ABC21046.1| DNA methylase N-4/N-6 [Rhodospirillum rubrum ATCC 11170]
          Length = 939

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 40/64 (62%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K++  Q P  ++ R ++ ++ PGD++LDP  GSG++  VA++  R +I I+  +  + +A
Sbjct: 432 KVYVVQTPTTVIQRCILMASDPGDLVLDPTCGSGSTAFVAEQWGRRWITIDTSRVSLALA 491

Query: 262 TKRI 265
             RI
Sbjct: 492 RARI 495



 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 64/161 (39%), Gaps = 24/161 (14%)

Query: 19  WKDKIIKGNSISVLEKLPAKS-----VDLIFADPPYNLQLNGQLY-----------RPDH 62
           W +++I G+S+SV+  L  +      V  I+ DPPY ++ N                 DH
Sbjct: 128 WTNRMILGDSLSVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGNKDH 187

Query: 63  -----SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
                  V A  D+W        Y ++ R  L   R +L  +G+++V     N+ R+  M
Sbjct: 188 ITREPEQVRAFRDTWR--DGIHTYLSYLRDRLTVARDLLTDSGSIFVQIGDENVHRV-RM 244

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
           L +  F   N I    +       G    N  + ++W S S
Sbjct: 245 LMDEVFGDENFISQISTKTSGGSTGEYISNVVDFILWYSKS 285


>gi|313813458|gb|EFS51172.1| DNA (cytosine-5-)-methyltransferase [Propionibacterium acnes
           HL025PA1]
 gi|315106866|gb|EFT78842.1| DNA (cytosine-5-)-methyltransferase [Propionibacterium acnes
           HL030PA1]
          Length = 416

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 92/236 (38%), Gaps = 35/236 (14%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           +  K  +L+  DPPYN+              D ++   DK S+ +A+  F  A       
Sbjct: 184 MDGKKANLVLTDPPYNVAFESS---------DGLSIKNDKMSA-DAFYEFLLAAFTQMAG 233

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNAHETLI 153
           V +   + +V  +           Q+  F +    +W K + +    GR  +Q  HE ++
Sbjct: 234 VCEKGASAYVFHADTEGLNFRRAFQDAGFKLSGCCIWVKDSLV---LGRSPYQWQHEPVL 290

Query: 154 WA-SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
           +    + K   Y            D +  + W        +  RN D    HPT KP  L
Sbjct: 291 YGWVKTGKHTWYA-----------DRKQTTVWRF-----DKPRRNAD----HPTSKPLDL 330

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           L+  + +ST+   I+LD F GSG++    +   R    +E+ + Y  +  +R A  
Sbjct: 331 LAYPIGNSTQANAIVLDTFAGSGSTLMACEATNRIAYCMELDEKYASVILRRYADA 386


>gi|268318070|ref|YP_003291789.1| DNA methylase N-4/N-6 domain-containing protein [Rhodothermus
           marinus DSM 4252]
 gi|262335604|gb|ACY49401.1| DNA methylase N-4/N-6 domain protein [Rhodothermus marinus DSM
           4252]
          Length = 396

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 96/262 (36%), Gaps = 58/262 (22%)

Query: 38  KSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
           KS+DLI   PPY    +  + GQ+     SL + + D +             R W   C 
Sbjct: 7   KSIDLIVTSPPYWHIKDYGVPGQI-GYGQSLHEYLKDLY-------------RVW-KECY 51

Query: 94  RVLKPNGTLWV-----------IGSYHNI---FRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           RVLKP   L V            G Y  I          + + F  +  I+W+K   M  
Sbjct: 52  RVLKPGRRLCVNIGDQFARSIIYGRYKIIPLHAEFIAQCEEIGFDYMGAIIWQKKTTMNT 111

Query: 140 FRGRRFQNAHE-------------TLIWASPSPKAKGYTFNYDALKAANEDVQ--MRSDW 184
             G     ++               LI+  P    K      +  K + E+ +      W
Sbjct: 112 TGGANVMGSYPYPPNGMIEIDYEFILIFKKPGKSDKVAQTLKEKSKLSKEEWKEYFLGHW 171

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
                 G+ ++        H    P+ L  R++   +   D +LDPF GSGT+  VA  L
Sbjct: 172 YF---GGARQIE-------HEAMFPDELPKRLIKMFSFVDDTVLDPFLGSGTTVKVALNL 221

Query: 245 RRSFIGIEMKQDYIDIATKRIA 266
            R+ +G E+   ++ I  ++I 
Sbjct: 222 GRNAVGYEINDKFVSIMKEKIG 243


>gi|256028672|ref|ZP_05442506.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
           D11]
          Length = 251

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 33/60 (55%)

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K G   HP + P  L S  +   T  GD++LDPF GS T+G  A+K  R +I IE   +Y
Sbjct: 163 KRGLVPHPARMPLELASFFINFLTDEGDLVLDPFGGSNTTGFCAEKQNRKWISIEANIEY 222


>gi|206576064|ref|YP_002237618.1| DNA methylase [Klebsiella pneumoniae 342]
 gi|206565122|gb|ACI06898.1| DNA methylase [Klebsiella pneumoniae 342]
          Length = 297

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 21/111 (18%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D +  G+ + VL  +   S D I  DPPY ++  G+              +WD       
Sbjct: 3   DILTHGDCLDVLRSMLGNSADSIVTDPPYGIKFMGK--------------TWD------- 41

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           YD  ++A    C RVLKP G L          R+   +++  F I + IV+
Sbjct: 42  YDVPSQAIWEECLRVLKPGGHLLSFAGSRTQHRMAARIEDAGFEIRDMIVF 92


>gi|288957068|ref|YP_003447409.1| DNA methylase N-4/N-6 [Azospirillum sp. B510]
 gi|288909376|dbj|BAI70865.1| DNA methylase N-4/N-6 [Azospirillum sp. B510]
          Length = 911

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K++  Q   A+  R ++ +T PGD++LDP  GSGT+  VA++  R +I I+  +  + +A
Sbjct: 405 KVYVVQTSPAVAQRCILMTTDPGDLVLDPTCGSGTTAYVAEQWGRRWITIDTSRVALALA 464

Query: 262 TKRI 265
             RI
Sbjct: 465 RARI 468



 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 29/141 (20%)

Query: 19  WKDKIIKGNSISVLEKLPAKS-----VDLIFADPPYNLQLNGQLY-----------RPDH 62
           W ++++ G+S++V+  L  +      V  I+ DPPY ++ N                 DH
Sbjct: 133 WTNRMVLGDSLAVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGNRDH 192

Query: 63  -----SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
                  V A  D+W       +Y  + R  L   R +L  +G+++V     NI R+  +
Sbjct: 193 ITRESEQVRAFRDTWR--DGIHSYLTYLRDRLTVARDLLTDSGSIFVQIGDANIHRVRAL 250

Query: 118 LQNL----NFWILNDIVWRKS 134
           L  +    NF  +++I ++K+
Sbjct: 251 LDEIFGEENF--ISEITFQKT 269


>gi|116331534|ref|YP_801252.1| DNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116125223|gb|ABJ76494.1| DNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 360

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 106/258 (41%), Gaps = 25/258 (9%)

Query: 35  LPAKSVDLIFADPPYNL-QLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
           L ++SVDL+   PPY + ++  +L+      +     +    S    +    + W  + R
Sbjct: 19  LKSESVDLVLTSPPYPMIEMWDELFFGFSKEIQENFPTDPNLSYERIHIELDKVWKESFR 78

Query: 94  RVLKPNGTLWV-IGS-----------YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN-F 140
            VLK  G L + IG            Y N  RI     ++ F  L  I+WRK    PN F
Sbjct: 79  -VLKNGGFLVINIGDATRNTSAGFQIYMNHARILQGCNSIGFQSLPGILWRKQTNSPNKF 137

Query: 141 RGRRFQNA-------HETLIWASPSPKAKGYTFNYDALKAANEDV-QMRSDWLIPI--CS 190
            G     A       HE ++    S K K  T      +A +    + R+ W   +    
Sbjct: 138 MGSGMLPAGAYVTLEHEHILIFRKSNKRKFVTKAEQFARAQSAFFWEERNLWFTDLWDFK 197

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           G ++  N    +      P  L +RI++  +  GD++LDPF+G+GT+   A    R+ IG
Sbjct: 198 GKKQSLNPLTGRDRSAAYPLELANRIILMYSLKGDVVLDPFWGTGTTTLAAIGNCRNSIG 257

Query: 251 IEMKQDYIDIATKRIASV 268
            ++         + ++S+
Sbjct: 258 FDLNPGLFQTHFENLSSL 275


>gi|134299056|ref|YP_001112552.1| DNA methylase N-4/N-6 domain-containing protein [Desulfotomaculum
           reducens MI-1]
 gi|134051756|gb|ABO49727.1| DNA methylase N-4/N-6 domain protein [Desulfotomaculum reducens
           MI-1]
          Length = 330

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           KD + + P Q    +++R +   + PGD++  PF G G+ G  A  + R F+GIE+K+ Y
Sbjct: 250 KDEKHICPLQL--DVIARGVELWSNPGDVVFSPFMGIGSEGYQAVLMGRRFVGIELKESY 307

Query: 258 IDIATKRI-ASVQPLGNIE 275
             IA   +  +V  L  I+
Sbjct: 308 FKIAANNLKMAVDELNEID 326


>gi|21674545|ref|NP_662610.1| DNA methylase, putative [Chlorobium tepidum TLS]
 gi|21647740|gb|AAM72952.1| DNA methylase, putative [Chlorobium tepidum TLS]
          Length = 1122

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 40/68 (58%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +KL+  Q    +L R L+ +T PGD++ DP  GSGT+  VA++  R +I  +  +  + +
Sbjct: 399 DKLYAVQTSVKILQRCLLMTTDPGDLVFDPTCGSGTTAYVAEQWGRRWITCDTSRVALTL 458

Query: 261 ATKRIASV 268
           A +R+ + 
Sbjct: 459 ARQRLMTA 466



 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 73/164 (44%), Gaps = 34/164 (20%)

Query: 19  WKDKIIKGNSISVLEKLPAKS-----VDLIFADPPYNLQLNGQLYRP-----------DH 62
           W +++I G+S+ V+  L  K      V +I+ DPPY ++  G  ++P           D 
Sbjct: 138 WSNRLIAGDSLLVMNSLLEKEGMAGKVQMIYIDPPYGIKY-GSNFQPFVNKRDVKDGKDE 196

Query: 63  SL------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
            L      + A  D+W+      +Y  + R  LL  R +L  +G+++V  S  N+  +  
Sbjct: 197 DLTAEPEQIRAFRDTWE--LGIHSYLTYLRDRLLLARELLTESGSIFVQISDENVHHVRE 254

Query: 117 MLQNL----NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
           ++  +    NF  +  I  +K +P P+   +      + LIW S
Sbjct: 255 LMDEVFGARNFQRV--ITIKKRSPQPD---KFLSGVADYLIWFS 293


>gi|255021942|ref|ZP_05293950.1| DNA methylase [Acidithiobacillus caldus ATCC 51756]
 gi|254968578|gb|EET26132.1| DNA methylase [Acidithiobacillus caldus ATCC 51756]
          Length = 481

 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 85/225 (37%), Gaps = 27/225 (12%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW----- 72
           E +  I  G+ + VL  LP    D +  DPPY+L    Q  R   +      D +     
Sbjct: 19  ESRYAIRVGDLLDVLPTLPENHFDGVLCDPPYHLT---QKSRGGSTRKANEDDPYGRHGV 75

Query: 73  --DKFSSFEAYD----AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
             D+    E +D    AF      A  RV+KP G L   G      R+    ++  F + 
Sbjct: 76  GTDRGFMGETWDGGDIAFRPETWRAVMRVMKPGGYLMAFGGSRTFHRLAVAFEDAGFVLA 135

Query: 127 NDIVWRKSNPMP-NFRGRRFQNAH----ETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
           + ++W   N  P N    +  + H      ++     P  K      +A  AA+     R
Sbjct: 136 DTLMWLYGNGFPKNLDLSKAMDRHFGMQRPVVGKRKHPTLKNSDLVEEAANAAHGKNFWR 195

Query: 182 SDWLIPICSGSERLR-NKDGEKLHPTQKPEALLSRILVSSTKPGD 225
            +W + +   ++  R N  G  L P  +P  LL R      KPG+
Sbjct: 196 REWDVTLPGHADSARWNGYGTALKPAYEP-ILLCR------KPGE 233


>gi|18202054|sp|O52513|MTS1_STRFI RecName: Full=Modification methylase SfiI; Short=M.SfiI; AltName:
           Full=N-4 cytosine-specific methyltransferase SfiI
 gi|2761010|gb|AAB95366.1| SfiI methyltransferase [Streptomyces fimbriatus]
          Length = 421

 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 73/182 (40%), Gaps = 51/182 (28%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFSSF--E 79
           G+S+  L KLP +S++ +   PPY    + + + QL      L D V D  ++      E
Sbjct: 34  GDSLDCLAKLPDESINTVVTSPPYWAVRDYEHDEQL-----GLEDEVDDYVERLVKIFRE 88

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWV-IG-SYHN-----------------------IFRI 114
            Y            RVL  +G+ W+ IG SY N                        FR+
Sbjct: 89  VY------------RVLATDGSAWLNIGDSYFNKQITVGGKPPRTGWKRNKQLSLVPFRV 136

Query: 115 GTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
              LQ+  +WI N  VW K N MP     R     E +   +   K++ Y FN D ++  
Sbjct: 137 ALALQDDGWWIRNVAVWHKPNAMPASVRDRLTVTWEPVFLLT---KSERYYFNLDEIRVP 193

Query: 175 NE 176
           ++
Sbjct: 194 HQ 195



 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 23/31 (74%)

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           LDPF GSGT+G V ++L   F+G+++ + Y+
Sbjct: 373 LDPFMGSGTTGRVVRELGGRFVGVDVNEHYM 403


>gi|189346973|ref|YP_001943502.1| DNA methylase N-4/N-6 domain protein [Chlorobium limicola DSM 245]
 gi|189341120|gb|ACD90523.1| DNA methylase N-4/N-6 domain protein [Chlorobium limicola DSM 245]
          Length = 906

 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 40/65 (61%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K++  Q    ++ R ++ +T PGD+++DP  GSGT+  VA++  R +I I+  +  + +
Sbjct: 401 DKIYVVQTHRKVIDRCILMATDPGDLVIDPTCGSGTTAYVAEQWGRRWITIDTSRVALAL 460

Query: 261 ATKRI 265
           A  RI
Sbjct: 461 ARARI 465



 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 23/124 (18%)

Query: 19  WKDKIIKGNSISVLEKLPAKS-----VDLIFADPPYNLQLNGQLY-----------RPDH 62
           W +++I G+S+ V+  L  +      V  I+ DPPY ++ N                 DH
Sbjct: 131 WANRMILGDSLQVMASLAEREGLRGKVQCIYIDPPYGIKFNSNFQWSTTSRDVKDGNTDH 190

Query: 63  -----SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
                  V A  D+W       +Y  + R  L   R +L  +G+++V     N+ R+  +
Sbjct: 191 ITREPEQVKAFRDTWR--DGIHSYLTYLRDRLTVARDLLTESGSIFVQIGDENVHRVRAL 248

Query: 118 LQNL 121
           +  +
Sbjct: 249 MDEV 252


>gi|116327802|ref|YP_797522.1| DNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116120546|gb|ABJ78589.1| DNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis L550]
          Length = 360

 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 106/258 (41%), Gaps = 25/258 (9%)

Query: 35  LPAKSVDLIFADPPYNL-QLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
           L ++SVDL+   PPY + ++  +L+      +     +    S    +    + W  + R
Sbjct: 19  LKSESVDLVLTSPPYPMIEMWDELFFGFSKEIQENFPTDPNLSYERIHIELDKVWKESFR 78

Query: 94  RVLKPNGTLWV-IGS-----------YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN-F 140
            VLK  G L + IG            Y N  RI     ++ F  L  I+WRK    PN F
Sbjct: 79  -VLKNGGFLVINIGDATRNTSAGFQIYMNHARILQGCNSIGFQSLPGILWRKQTNSPNKF 137

Query: 141 RGRRFQNA-------HETLIWASPSPKAKGYTFNYDALKAANEDV-QMRSDWLIPI--CS 190
            G     A       HE ++    S K K  T      +A +    + R+ W   +    
Sbjct: 138 MGSGMLPAGAYVTLEHEHILIFRKSNKRKFVTKAEQFARAQSAFFWEERNLWFTDLWDFK 197

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           G ++  N    +      P  L +RI++  +  GD++LDPF+G+GT+   A    R+ IG
Sbjct: 198 GKKQSLNPLTGRDRSAAYPLELANRIILMYSLKGDVVLDPFWGTGTTTLAAIGNCRNSIG 257

Query: 251 IEMKQDYIDIATKRIASV 268
            ++         + ++S+
Sbjct: 258 FDLNPGLFQTHFENLSSL 275


>gi|323956991|gb|EGB52718.1| DNA methylase [Escherichia coli H263]
          Length = 250

 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 70/166 (42%), Gaps = 36/166 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  +  LP  SVDLI  DPPY                    + WD  + ++  
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPY---------------FKVKPEGWD--NQWKGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           D + + WL  C     RVLKP G+L++   +     I  M++   F +LN I+W K  P 
Sbjct: 54  DDYLK-WLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAK--PS 109

Query: 138 PNFRG------RRFQNAHETLIWASP-----SPKAKGYTFNYDALK 172
             + G      R +  A E +++A        PK  GY     ALK
Sbjct: 110 GRWNGCNKESLRAYFPATERILFAEHYQGPYRPKDAGYEAKGRALK 155


>gi|304316272|ref|YP_003851417.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777774|gb|ADL68333.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 432

 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 33/63 (52%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HP   P  L  R +   +  G I+L+PF GSGT+   A++  R    +E+   Y D+A
Sbjct: 356 KEHPAMFPVELPWRCIKMHSDKGGIVLEPFSGSGTTIIAAEQTERKCYAMELSPVYCDLA 415

Query: 262 TKR 264
            KR
Sbjct: 416 VKR 418


>gi|299067592|emb|CBJ38796.1| putative Site-specific DNA-methyltransferase [Ralstonia
           solanacearum CMR15]
          Length = 466

 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           R + K G+ + HP   P AL   ++ + +   D++ +PF GSGT+   A++  R    +E
Sbjct: 361 RHKGKIGKGIDHPAVFPVALPEFVIEAYSDASDVVFEPFGGSGTTMLAAQRTGRLCRSVE 420

Query: 253 MKQDYIDIATKRI 265
           +  +Y+D+A KR 
Sbjct: 421 VAPEYVDVAIKRF 433


>gi|294787786|ref|ZP_06753030.1| DNA (cytosine-5-)-methyltransferase [Simonsiella muelleri ATCC
           29453]
 gi|294484079|gb|EFG31762.1| DNA (cytosine-5-)-methyltransferase [Simonsiella muelleri ATCC
           29453]
          Length = 348

 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 20/149 (13%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA------YDAFTRAWLLACR 93
           +DLI+ DPPYN Q   Q++      +  ++ +    +++E       Y  F R  L+  R
Sbjct: 40  IDLIYIDPPYNTQ---QIFTISDERISTISRTNHGITAYEDNRSMANYLEFMRERLILMR 96

Query: 94  RVLKPNGTLWV-----IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
            +L   G+++V     +G Y  I  +  +    NF   NDI   KSNP  NF  R F N 
Sbjct: 97  ELLSSCGSIYVHIDSKVGHYLKII-MDEVFGADNF--KNDIARIKSNP-KNFSRRAFGNE 152

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANED 177
            + +++ + +  AK   FN   +   +ED
Sbjct: 153 KDMVLFYAKN--AKKNIFNNITIPLTDED 179



 Score = 41.2 bits (95), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 32/50 (64%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           ++PT+K   +L  I+  S+ P  I+LD F GSG++   A  L+R +IGI+
Sbjct: 276 IYPTEKNAEMLQMIIGQSSNPDSIVLDCFAGSGSTLWAAHCLQRRWIGID 325


>gi|254293997|ref|YP_003060020.1| Site-specific DNA-methyltransferase (adenine-specific) [Hirschia
           baltica ATCC 49814]
 gi|254042528|gb|ACT59323.1| Site-specific DNA-methyltransferase (adenine-specific) [Hirschia
           baltica ATCC 49814]
          Length = 546

 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 7/75 (9%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMK 254
           +++  T KP  L+ R+L   + P D+ILD F GSGT+G     L       R FI +EM 
Sbjct: 323 DEIFATPKPSTLIQRLLEIGSNPDDLILDSFAGSGTTGHAVLDLNKQDGGNRKFILVEMD 382

Query: 255 QDYI-DIATKRIASV 268
           Q    D+  +R+  V
Sbjct: 383 QKIAPDVTAERLKRV 397


>gi|284048425|ref|YP_003398764.1| DNA methylase N-4/N-6 domain protein [Acidaminococcus fermentans
           DSM 20731]
 gi|283952646|gb|ADB47449.1| DNA methylase N-4/N-6 domain protein [Acidaminococcus fermentans
           DSM 20731]
          Length = 416

 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 37/61 (60%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP+ KP  +L+ ++  S++   ++LD F GS ++     +L R   G+E++  ++D+A K
Sbjct: 327 HPSSKPVPMLAYLIKLSSQINGVVLDGFLGSASTLMACDQLGRICYGVELEPKFVDVAVK 386

Query: 264 R 264
           R
Sbjct: 387 R 387


>gi|256003546|ref|ZP_05428536.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum DSM
           2360]
 gi|255992570|gb|EEU02662.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum DSM
           2360]
 gi|316941389|gb|ADU75423.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum DSM
           1313]
          Length = 432

 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 33/63 (52%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HP   P  L  R +   +  G I+L+PF GSGT+   A++  R    +E+   Y D+A
Sbjct: 356 KEHPAMFPVELPWRCIKMHSDKGGIVLEPFSGSGTTIIAAEQTERKCYAMELSPVYCDLA 415

Query: 262 TKR 264
            KR
Sbjct: 416 VKR 418


>gi|170694682|ref|ZP_02885833.1| DNA methylase N-4/N-6 domain protein [Burkholderia graminis C4D1M]
 gi|170140313|gb|EDT08490.1| DNA methylase N-4/N-6 domain protein [Burkholderia graminis C4D1M]
          Length = 661

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
            ++ ++N  G K  P  KP +L+  +L  +T PGDI+LD F GSGT+G    +L
Sbjct: 420 ATDEVKNILGSKAFPYPKPISLIKGLLAQATTPGDIVLDFFAGSGTTGQAVLEL 473



 Score = 37.0 bits (84), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 81/196 (41%), Gaps = 22/196 (11%)

Query: 23  IIKGN---SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           II+G+   S+ +L    A  + +I+ DPPYN      +Y  +   V A  D W      E
Sbjct: 76  IIEGDNFDSLRLLRATHAGKIRVIYIDPPYNTGNKDWVY--NDKFVGA-NDRWRHSQWLE 132

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMP 138
               F    L   R +L  +G + V  +  N  R+  ++  +        +VWR  +   
Sbjct: 133 ----FLYQRLTLARDLLTSDGVILVSINDENRSRLELLMDEVFPRRRAGSLVWRTKD-TG 187

Query: 139 NFRGRRFQNAHE-TLIWASPSPKAKGYTFNYDAL---KAANEDVQMRSDWLIPICSGSER 194
           N   +RF + HE  L++A+      G+ FN  A    K  N D   R DW     + ++ 
Sbjct: 188 NDLSQRFSHVHEHVLVYAN-----AGFKFNGRATSKHKFRNPDKDSRGDWSPQPLTANKT 242

Query: 195 LRNKDGEKLHPTQKPE 210
           L  +     +P Q PE
Sbjct: 243 LVERPN-TYYPIQNPE 257


>gi|125974145|ref|YP_001038055.1| DNA methylase N-4/N-6 [Clostridium thermocellum ATCC 27405]
 gi|125714370|gb|ABN52862.1| DNA methylase N-4/N-6 [Clostridium thermocellum ATCC 27405]
          Length = 432

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 33/63 (52%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HP   P  L  R +   +  G I+L+PF GSGT+   A++  R    +E+   Y D+A
Sbjct: 356 KEHPAMFPVELPWRCIKMHSDKGGIVLEPFSGSGTTIIAAEQTERKCYAMELSPVYCDLA 415

Query: 262 TKR 264
            KR
Sbjct: 416 VKR 418


>gi|331028047|ref|YP_004421762.1| DNA methylase [Synechococcus phage S-CBS3]
 gi|294805660|gb|ADF42498.1| DNA methylase [Synechococcus phage S-CBS3]
          Length = 754

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           N+D   + P Q    ++ R +   + PGD++L PF G G+ G VA +  R F+G E+K  
Sbjct: 674 NEDERHICPLQLD--VIRRGMQLWSNPGDVVLSPFAGIGSEGFVALEQGRKFVGFELKPS 731

Query: 257 YIDIATKRI 265
           Y   A K +
Sbjct: 732 YFGCAVKNL 740


>gi|297571107|ref|YP_003696881.1| DNA methylase N-4/N-6 domain protein [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931454|gb|ADH92262.1| DNA methylase N-4/N-6 domain protein [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 416

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 102/252 (40%), Gaps = 38/252 (15%)

Query: 20  KDKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G++ S   V   +  K  +L+  DPPYN+           S +    D  D+  
Sbjct: 167 RHRLVCGDATSQTDVEALMDGKRANLVLTDPPYNVAFESG------SGLSIKNDKMDR-- 218

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E +  F  +       V +   + +V  +           Q+  F++    +W K + 
Sbjct: 219 --EKFYNFLLSAFTNMAAVCEKGASAYVFHADTEGLNFRRAFQDAGFYLSGCCIWVKDSL 276

Query: 137 MPNFRGRR-FQNAHETLIWA-SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           +    GR  +Q  HE +++    + K + Y            D +  + W     + ++ 
Sbjct: 277 V---LGRSPYQWQHEPVLYGWVKTGKHRWYA-----------DRKQTTIW-----NFAKP 317

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            RN D    HPT KP  LL+  L +ST+   I+LD F GSG++    +   R    +E+ 
Sbjct: 318 RRNAD----HPTSKPLDLLAYPLQNSTQANAIVLDTFAGSGSTLMACETTDRICHAMELD 373

Query: 255 QDYIDIATKRIA 266
           + Y  +  +R A
Sbjct: 374 EKYASVILRRYA 385


>gi|118575846|ref|YP_875589.1| adenine specific DNA methylase [Cenarchaeum symbiosum A]
 gi|118194367|gb|ABK77285.1| adenine specific DNA methylase [Cenarchaeum symbiosum A]
          Length = 786

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
           Q+ + WL     G E        K +  Q     + R ++ +T PGD++ DP  GSGT+ 
Sbjct: 349 QLNNMWLDTTSGGFE-------GKTYVVQTTAKTIRRFMLMTTDPGDLVFDPTCGSGTTA 401

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            V+++  R +I ++ ++  I +A +RI +
Sbjct: 402 YVSEEYGRRWITVDTQRVAITLAKRRIMA 430



 Score = 40.8 bits (94), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 25/125 (20%)

Query: 19  WKDKIIKGNSISVLEKL-----PAKSVDLIFADPPYNLQLNGQLYRP-----------DH 62
           W +++I G+S+ V+  L      A +V +I+ DPPY ++  G  ++P           D 
Sbjct: 71  WSNRLIGGDSLLVMNSLLRKERMADTVQMIYIDPPYGIKY-GSNFQPFVSKKEVKDGSDK 129

Query: 63  SL------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
            L      + A  D+WD      +Y ++ R  L+  R +LK +G++ V  S  N+  +  
Sbjct: 130 DLAYTPETIHAFKDTWD--LEIHSYISYLRDRLVLSRELLKVSGSIGVQISDENMHYVRM 187

Query: 117 MLQNL 121
           ++  +
Sbjct: 188 LMDEV 192


>gi|332983336|ref|YP_004464777.1| DNA methylase N-4/N-6 domain-containing protein [Mahella
           australiensis 50-1 BON]
 gi|332701014|gb|AEE97955.1| DNA methylase N-4/N-6 domain protein [Mahella australiensis 50-1
           BON]
          Length = 432

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 33/63 (52%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HP   P  L  R +   +  G I+L+PF GSGT+   A++  R    +E+   Y D+A
Sbjct: 356 KEHPAMFPVELPWRCIKMHSDKGGIVLEPFSGSGTTIIAAEQTERKCYAMELSPVYCDLA 415

Query: 262 TKR 264
            KR
Sbjct: 416 VKR 418


>gi|167630912|ref|YP_001681411.1| DNA methylase [Heliobacterium modesticaldum Ice1]
 gi|167593652|gb|ABZ85400.1| DNA methylase [Heliobacterium modesticaldum Ice1]
          Length = 432

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 33/63 (52%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HP   P  L  R +   +  G I+L+PF GSGT+   A++  R    +E+   Y D+A
Sbjct: 356 KEHPAMFPVELPWRCIKMHSDKGGIVLEPFSGSGTTIIAAEQTERKCYAMELSPVYCDLA 415

Query: 262 TKR 264
            KR
Sbjct: 416 VKR 418


>gi|300933375|ref|ZP_07148631.1| ParB family DNA methylase [Corynebacterium resistens DSM 45100]
          Length = 416

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 94/236 (39%), Gaps = 35/236 (14%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           +  KS +L+  DPPYN+              D +T   D+  +   Y+ F  A       
Sbjct: 184 MDGKSANLVLTDPPYNVAFESS---------DGLTIKNDEMKADSFYE-FLLAAFTNMAG 233

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNAHETLI 153
           VL   G+ +V  +            +  F +    +W K + +    GR  +Q  HE ++
Sbjct: 234 VLDKGGSAYVFHADTEGLNFRKAFIDAGFKLSGCCIWVKDSLV---LGRSPYQWQHEPVL 290

Query: 154 WA-SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
           +      K K +            D +  + W     + ++  +N D    HPT KP  L
Sbjct: 291 YGWKQGAKHKWFA-----------DRKQTTIW-----NFAKPRKNSD----HPTSKPLDL 330

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           L+  + +ST+   IILD F GSG++   A++  R    +E+   Y  +  +R A  
Sbjct: 331 LAYPIRNSTQANAIILDTFAGSGSTLMAAEQTDRIAYLMELDDKYASVILRRYAEA 386


>gi|325678020|ref|ZP_08157659.1| DNA (cytosine-5-)-methyltransferase [Ruminococcus albus 8]
 gi|324110300|gb|EGC04477.1| DNA (cytosine-5-)-methyltransferase [Ruminococcus albus 8]
          Length = 179

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           +LH  +KP  L+ ++L   T  G+++LD F GSG  G    K RR  + IE  +++I   
Sbjct: 102 RLHQAEKPVGLVEQLLEYLTFEGEMVLDQFAGSGVVGEACIKKRRGCVLIEKSKEFISKI 161

Query: 262 TKRI 265
            KR+
Sbjct: 162 IKRL 165


>gi|163784951|ref|ZP_02179703.1| putative DNA modification methylase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879778|gb|EDP73530.1| putative DNA modification methylase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 280

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           EKLHP       ++R++   TK GD +LDPF G G++        R   GIE+ + + +I
Sbjct: 48  EKLHPAPFSYLDVARLIKFFTKKGDRVLDPFLGVGSTIKACLDTDREGYGIELSEKWCEI 107

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAF 290
             KR+         E  ++ G   E +  F
Sbjct: 108 TKKRLKEESNFIIDEQHLICGDSREIKKYF 137


>gi|119356767|ref|YP_911411.1| DNA methylase N-4/N-6 domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354116|gb|ABL64987.1| DNA methylase N-4/N-6 domain protein [Chlorobium phaeobacteroides
           DSM 266]
          Length = 884

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 40/69 (57%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
            EK +  Q    ++ R ++ +T PGD++LDP  GSGT+  VA++  R +I I+  +  ++
Sbjct: 430 AEKNYIVQTYSKVIHRCILMTTDPGDLVLDPTCGSGTTAYVAEQWGRRWITIDTSRIALN 489

Query: 260 IATKRIASV 268
           IA  R  + 
Sbjct: 490 IAKTRFMTA 498



 Score = 37.4 bits (85), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 23/124 (18%)

Query: 19  WKDKIIKGNSISVLEKL-----PAKSVDLIFADPPYNLQLNG--QLYRPDHSLVD----- 66
           W +++I+G+S  V+  L      A  V  I+ DPPY ++ N   Q+   D ++ D     
Sbjct: 137 WTNRLIQGDSHLVMASLLEREGMAGQVQTIYIDPPYGIKYNSNWQMKLNDRNVKDGSDEH 196

Query: 67  ---------AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
                    A  D+W+      +Y ++ R  +L  R +L  +G+ +V  S  N+  +  +
Sbjct: 197 LTGEPEMIKAFRDTWE--LGIHSYLSYLRDRMLIARELLTESGSCFVQISDENVHLVRCL 254

Query: 118 LQNL 121
           +  +
Sbjct: 255 MDEV 258


>gi|5578898|emb|CAB51247.1| ORF3; hypothetical protein [Neisseria meningitidis]
          Length = 171

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 34/79 (43%)

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K+  K HPTQKP  L   +L    K GD ILD   GSGT        +      E+  DY
Sbjct: 84  KNRNKTHPTQKPVELYQWLLKMYAKQGDKILDTHLGSGTLAIACCIAQFDLTACEINSDY 143

Query: 258 IDIATKRIASVQPLGNIEL 276
              + ++I +  P   I  
Sbjct: 144 YQQSIEKIKNNLPEARISF 162


>gi|323141495|ref|ZP_08076383.1| DNA (cytosine-5-)-methyltransferase [Phascolarctobacterium sp. YIT
           12067]
 gi|322414011|gb|EFY04842.1| DNA (cytosine-5-)-methyltransferase [Phascolarctobacterium sp. YIT
           12067]
          Length = 670

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 45/95 (47%), Gaps = 9/95 (9%)

Query: 182 SDWLIPICSGSERLRNKDGEK-LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           +D L     GS  L +  GEK + P  KP  L+  I+   TK  DIILD F GS T+   
Sbjct: 384 TDKLYYTNRGSNELTSALGEKGVFPYPKPVKLIEDIISRVTKENDIILDSFAGSATTAHA 443

Query: 241 AKKL------RRSFIGIEMKQDYID-IATKRIASV 268
              +       R FI IEM  DY D I  +R+  V
Sbjct: 444 VLNMNKADGGNRKFICIEM-MDYADTITAERVKRV 477


>gi|294629192|ref|ZP_06707752.1| DNA (cytosine-5-)-methyltransferase [Streptomyces sp. e14]
 gi|292832525|gb|EFF90874.1| DNA (cytosine-5-)-methyltransferase [Streptomyces sp. e14]
          Length = 369

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP + P  L +  +   T PGD+++D F GS T+G  A+ L R+++  E+   Y  ++  
Sbjct: 253 HPARFPIKLPTFFIKMLTDPGDVVVDFFGGSNTTGRAAEDLGRNWLSFELDPAYAALSAV 312

Query: 264 RIASVQPLGNIELTV 278
           R    Q L  IE  V
Sbjct: 313 RFMEGQDLKAIERAV 327



 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 60/157 (38%), Gaps = 33/157 (21%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           + G+S+ +L +LPA SVDL    PP+ L         D                 E Y A
Sbjct: 23  LTGDSLELLGELPANSVDLFMTSPPFPLLRKKAYGNKDQ----------------EEYVA 66

Query: 84  FTRAWLLACRRVLKPNGTLWV-----------IGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           +   +    +  LKP G+L +           + S H    +   + +L +++  +  W 
Sbjct: 67  WLVKFAKLAKDALKPTGSLVIDIGGAYQQGEPVRSLHQFRALLAFVDDLGYFLAEEFYWY 126

Query: 133 KSNPMP------NFRGRRFQNAHETLIWASPSPKAKG 163
               +P      N R  R ++A  T+ W S + + K 
Sbjct: 127 NPAKLPSPIEWVNKRKYRAKDAVNTVWWLSKTERPKA 163


>gi|300115200|ref|YP_003761775.1| adenine-specific DNA-methyltransferase [Nitrosococcus watsonii
           C-113]
 gi|299541137|gb|ADJ29454.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nitrosococcus watsonii C-113]
          Length = 238

 Score = 45.4 bits (106), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 95/250 (38%), Gaps = 61/250 (24%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYN--------------LQLNGQLYR-PDHSLV 65
           D+ IK + +  L +L   SV   F DP Y                QL  Q+ + P+ ++ 
Sbjct: 25  DQKIKMDGLKFLGRLVDNSVPAAFFDPQYRGVMDKLKYGNEGSRQQLRAQMKQMPEETIF 84

Query: 66  DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNLNFW 124
           D V++                       RVL P+G L++ I  +H      +        
Sbjct: 85  DFVSE---------------------IARVLCPSGHLFLWIDKFHLCEGTSSWFDGTPMK 123

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP-KAKGYTFNYDALKAANEDVQMRSD 183
            ++ I W K      +R RR     E L+ A   P +AKG   N+       E  Q    
Sbjct: 124 TVDLITWDKERIGMGYRSRR---KAEYLLVAQKKPVRAKGVWTNHSIPDVYQERFQRNMS 180

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           +                   HP  KP  L ++++ + T  GD+++DP  GS +  A A++
Sbjct: 181 FA------------------HP--KPIGLQAKLIDAVTNSGDVVIDPAAGSFSVLAAAQQ 220

Query: 244 LRRSFIGIEM 253
             R F+G ++
Sbjct: 221 TGRKFLGCDI 230


>gi|313667098|gb|ADR72994.1| M1.BsrI [Geobacillus stearothermophilus]
          Length = 416

 Score = 45.4 bits (106), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 42/83 (50%)

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           KD  K H    P  L  R++   ++ GD+I DPF G GT+   A ++ R+ IGIE+   +
Sbjct: 123 KDYHKEHGAVFPLKLAERLIKMYSREGDLIFDPFSGIGTTIKAALEMNRNGIGIELNPKF 182

Query: 258 IDIATKRIASVQPLGNIELTVLT 280
            ++  + +   +    I+L   T
Sbjct: 183 YELTKQILLDPKETPIIDLCTFT 205


>gi|313678462|ref|YP_004056202.1| type III restriction-modification system, Mod subunit [Mycoplasma
           bovis PG45]
 gi|312950447|gb|ADR25042.1| type III restriction-modification system, Mod subunit [Mycoplasma
           bovis PG45]
          Length = 352

 Score = 45.4 bits (106), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 145/348 (41%), Gaps = 41/348 (11%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNL-QLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           K  I+  +++ +   +  +SVDL+   PPY + ++  +++  + + +    D    F   
Sbjct: 4   KHTILNIDALKMNSHIDDESVDLVITSPPYPMIKMWDEIFEINENEIKTEADVNSAF--L 61

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWV-IG-SYHNI---FRI-GTMLQNLNFWI------L 126
           +A       W     + +KP G + + IG +  N+   FR+     Q +NF+I      L
Sbjct: 62  KATQFLNNIWE-KVDKSIKPGGIVCINIGDATRNLGGNFRLFSNSGQVINFFIKKGYLQL 120

Query: 127 NDIVWRKSNPMPN-FRGRRFQNA-------HE-TLIWASPSPK-----AKGYTF-NYDAL 171
             I+WRK    PN F G     A       HE  LI+     K     AK  +  N  A 
Sbjct: 121 PSIIWRKQTNAPNKFMGSGMLPAGAYATLEHEWILIFRKGITKREFKNAKDKSLRNESAF 180

Query: 172 KAANEDVQMRSDWLIPICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
                +V     W          ++N +D    +P + P  L+S   V +    DI+ DP
Sbjct: 181 FWEERNVWFSDLWDFKGIKQKNDIKNSRDRTAAYPIELPYRLISMFSVKN----DIVFDP 236

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAF 290
           F G+GT+   +  L+R+ IG+E+ +   +   + +       +++L      +   R++ 
Sbjct: 237 FLGTGTTTLASMLLQRNSIGVEIDKSLCNHFKEYLVK----NDVKLVDNFNDKISKRISS 292

Query: 291 NLLVERGLIQPGQILTNAQGNISATV-CADGTLISGTELGSIHRVGAK 337
           +    +  +  G++L +    +   V  +    IS  ++ SI+++  K
Sbjct: 293 HTEFVKKRVNEGKLLKHYNSILGTEVMTSQEKFISFNKVSSINKIDDK 340


>gi|218673725|ref|ZP_03523394.1| DNA modification methylase M.SthI [Rhizobium etli GR56]
          Length = 282

 Score = 45.4 bits (106), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 89/237 (37%), Gaps = 72/237 (30%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           +++S + +LP   +D I   PPY  Q +          VD  T   D   + +AY    R
Sbjct: 19  DALSGVRRLPDNFIDCIVTSPPYYWQRD--------YGVDGHTGQED---TIDAYVEALR 67

Query: 87  AWLLACRRVLKPNGTLWVI--GSYHN---------------------------------- 110
           +      RVLKP+GT +V+   +Y++                                  
Sbjct: 68  SVFSEALRVLKPSGTAFVVLGDTYYSGKGQPRGGDPKQTWRGVARQKYRAVDRPGFGVPK 127

Query: 111 ------IFRIGTMLQNLNFWILNDIVWRKSNPM--PNFRGRRFQNAHETLIWASPSPKAK 162
                  +R+   LQN  + + + ++WRK+ P+  P+ R R +       I      K  
Sbjct: 128 KSLLGVPWRVALALQNSGWVLRSCVIWRKTKPLAEPSVRDRPWTTTETIFILT----KTG 183

Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVS 219
            Y F+   L A  EDV     W IP  +  +R R       H    PEAL+ R L +
Sbjct: 184 RYYFDRGGL-AGQEDV-----WDIPARNALKRYR-------HAAPFPEALVERCLAA 227


>gi|194337258|ref|YP_002019052.1| DNA methylase N-4/N-6 domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309735|gb|ACF44435.1| DNA methylase N-4/N-6 domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 571

 Score = 45.4 bits (106), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 36/68 (52%), Gaps = 7/68 (10%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS------FIGIEMKQDYI-DI 260
           KP  LL  +   +T   D+ILD F GSGTSG    KL +S      FI IEMK+    DI
Sbjct: 363 KPTTLLEELFSFTTSGDDLILDSFAGSGTSGHAVLKLNKSDGQNRRFILIEMKEKIARDI 422

Query: 261 ATKRIASV 268
             +RI  V
Sbjct: 423 TAERIRRV 430


>gi|256384315|gb|ACU78885.1| GANTC--recognizing Type II restriction modification system (MmyCIV)
           adenine DNA methylase subunit [Mycoplasma mycoides
           subsp. capri str. GM12]
 gi|256385148|gb|ACU79717.1| GANTC--recognizing Type II restriction modification system (MmyCIV)
           adenine DNA methylase subunit [Mycoplasma mycoides
           subsp. capri str. GM12]
 gi|296455587|gb|ADH21822.1| GANTC--recognizing Type II restriction modification system (MmyCIV)
           adenine DNA methylase subunit [synthetic Mycoplasma
           mycoides JCVI-syn1.0]
          Length = 239

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 96/237 (40%), Gaps = 44/237 (18%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           + + +L  +   ++ ++F DP Y   L+   Y  +      +  S  +  + E    F R
Sbjct: 37  DGLVILNNIKDNAIPVVFFDPQYRGVLDKLSYGNEGK--RQIKRSELQQMTEEKIVHFIR 94

Query: 87  AWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
                  RVL P G L++ +  +H    I   +++ +  I++ IVW K      +R RR 
Sbjct: 95  E----MDRVLIPTGHLFLWVDKFHLCQGISDWIKDTSLSIVDMIVWDKEKMGMGYRTRR- 149

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN-------K 198
               E LI     P                  ++ ++ W         RLRN       K
Sbjct: 150 --QCEYLIVLQKKP------------------IRAKNVW---------RLRNIRDVWKEK 180

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
              K+HP QKP  L   ++ + + PGD+I+D   GS +      +  R FIG ++K+
Sbjct: 181 IVGKVHPHQKPIELQKILIQAVSNPGDVIMDVAAGSFSVLTSCIETGRLFIGTDIKE 237


>gi|21230526|ref|NP_636443.1| DNA methylase [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|21112097|gb|AAM40367.1| possible DNA methylase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
          Length = 972

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 1/81 (1%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           ++PI    E L+   G  ++  Q   +++ R L+ ++ PGD++LDP  GSGT+  VA++ 
Sbjct: 438 VLPIADRWESLQIGTG-LIYVVQTATSVVERCLLMASDPGDLVLDPTCGSGTTAYVAEQW 496

Query: 245 RRSFIGIEMKQDYIDIATKRI 265
            R ++ I+  +  + +A  RI
Sbjct: 497 GRRWVTIDTSRVALALARARI 517



 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 25/125 (20%)

Query: 19  WKDKIIKGNSISVLEKLPAKS-----VDLIFADPPYNLQLN-----------------GQ 56
           W++++I G+S+ V+  L  +      V  I+ DPPY ++ N                 G 
Sbjct: 162 WQNRMILGDSLQVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGNTGH 221

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
           + R +   V A  D+W       +Y  + R  L+  R +L  +G+++V     N+ R+  
Sbjct: 222 ITR-EPEQVKAFRDTWR--DGIHSYLTYLRDRLMVARDLLTESGSIFVQIGDENVHRVRA 278

Query: 117 MLQNL 121
           +L  +
Sbjct: 279 VLDEV 283


>gi|168261225|ref|ZP_02683198.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|205349940|gb|EDZ36571.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 652

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 27/157 (17%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L    A +VD+I+ DPPYN   +G +Y 
Sbjct: 95  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY- 147

Query: 60  PDH------SLVD---------AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
           PDH      +L D         A   S    S+  A+ +F    L   R++LK  G +++
Sbjct: 148 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 207

Query: 105 IGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMPN 139
               +    +  M+  +      + +++W++   + N
Sbjct: 208 SIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISN 244


>gi|167621143|ref|ZP_02389774.1| putative modification methylase [Burkholderia thailandensis Bt4]
          Length = 963

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 39/64 (60%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           KL+  Q    ++ R ++ ++ PGD++LDP  GSGT+  V+++  R +I I+  +  + +A
Sbjct: 445 KLYVVQTATTVIERCILMASDPGDLVLDPTCGSGTTAYVSEQHARRWITIDTSRVALALA 504

Query: 262 TKRI 265
             RI
Sbjct: 505 RARI 508



 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 27/126 (21%)

Query: 19  WKDKIIKGNSISVLEKLPAKS-----VDLIFADPPYNLQLNGQLY--------------- 58
           W++++I G+S+ V+  L  +      V  I+ DPPY ++ N                   
Sbjct: 161 WQNRMILGDSLQVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGNTAH 220

Query: 59  ---RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
               P+   V A  D+W       +Y  + R  ++  R +L  +G+++V     N+ R+ 
Sbjct: 221 ITREPEQ--VKAFRDTWR--DGIHSYLTYLRDRVIVFRDLLNESGSVFVQIGVENVHRVR 276

Query: 116 TMLQNL 121
            +L  +
Sbjct: 277 AVLDEV 282


>gi|121611088|ref|YP_998895.1| DNA methylase N-4/N-6 domain-containing protein [Verminephrobacter
           eiseniae EF01-2]
 gi|121555728|gb|ABM59877.1| DNA methylase N-4/N-6 domain protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 972

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 39/65 (60%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +KL+  Q    ++ R ++ +T PGD++LDP  GSGT+   A++  R +I I+  +  + +
Sbjct: 462 DKLYVVQTNPKVIERCILMTTDPGDLVLDPTCGSGTTAYAAEQWGRRWITIDTSRVALAL 521

Query: 261 ATKRI 265
           A  RI
Sbjct: 522 ARARI 526



 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 23/124 (18%)

Query: 19  WKDKIIKGNSISVLEKLPAKS-----VDLIFADPPYNLQL----------------NGQL 57
           W +++I G+S+ V+  L  +      V  I+ DPPY ++                 N Q 
Sbjct: 164 WANRMILGDSLQVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGNAQH 223

Query: 58  YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
              +   V A  D+W       +Y  + R  L   R +L  +G+++V     N+ R+ T+
Sbjct: 224 ITREPEQVKAFRDTWR--DGIHSYLTYLRDRLTVARDLLTESGSIFVQIGEENVHRVRTV 281

Query: 118 LQNL 121
           L  +
Sbjct: 282 LDEV 285


>gi|62178968|ref|YP_215385.1| DNA methylase; restriction system [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|224582195|ref|YP_002635993.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|62126601|gb|AAX64304.1| DNA methylase; restriction system [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|224466722|gb|ACN44552.1| Type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|322713424|gb|EFZ04995.1| DNA methylase; restriction system [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 652

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 27/157 (17%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L    A +VD+I+ DPPYN   +G +Y 
Sbjct: 95  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY- 147

Query: 60  PDH------SLVD---------AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
           PDH      +L D         A   S    S+  A+ +F    L   R++LK  G +++
Sbjct: 148 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 207

Query: 105 IGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMPN 139
               +    +  M+  +      + +++W++   + N
Sbjct: 208 SIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISN 244


>gi|329943977|ref|ZP_08292246.1| conserved domain protein [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328531410|gb|EGF58252.1| conserved domain protein [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 99

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 4/41 (9%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
           RN D    HPT KP  L++RIL +S  PGD++LD F GSG+
Sbjct: 29  RNPD----HPTMKPVELITRILTNSFPPGDLVLDLFGGSGS 65


>gi|322614638|gb|EFY11567.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322620157|gb|EFY17029.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322623451|gb|EFY20290.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322629251|gb|EFY26030.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322631971|gb|EFY28725.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
 gi|322637291|gb|EFY33993.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322642176|gb|EFY38785.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 531954]
 gi|322653364|gb|EFY49697.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322660487|gb|EFY56723.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322664639|gb|EFY60832.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322669308|gb|EFY65458.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322670854|gb|EFY66987.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322678908|gb|EFY74963.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|322681936|gb|EFY77961.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322688062|gb|EFY84028.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323194417|gb|EFZ79612.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323197047|gb|EFZ82189.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323203372|gb|EFZ88397.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
 gi|323206883|gb|EFZ91836.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323210347|gb|EFZ95239.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
 gi|323214589|gb|EFZ99340.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323223146|gb|EGA07489.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323224883|gb|EGA09146.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323230087|gb|EGA14207.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323233825|gb|EGA17914.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323238481|gb|EGA22539.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323244169|gb|EGA28178.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323246329|gb|EGA30312.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323251955|gb|EGA35818.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323257952|gb|EGA41631.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323261577|gb|EGA45155.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323265035|gb|EGA48534.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323272598|gb|EGA56005.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
          Length = 652

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 27/157 (17%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L    A +VD+I+ DPPYN   +G +Y 
Sbjct: 95  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY- 147

Query: 60  PDH------SLVD---------AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
           PDH      +L D         A   S    S+  A+ +F    L   R++LK  G +++
Sbjct: 148 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 207

Query: 105 IGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMPN 139
               +    +  M+  +      + +++W++   + N
Sbjct: 208 SIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISN 244


>gi|167560981|ref|ZP_02353897.1| putative modification methylase [Burkholderia oklahomensis EO147]
          Length = 963

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 39/64 (60%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           KL+  Q    ++ R ++ ++ PGD++LDP  GSGT+  V+++  R +I I+  +  + +A
Sbjct: 445 KLYVVQTATTVIERCILMASDPGDLVLDPTCGSGTTAYVSEQHARRWITIDTSRVALALA 504

Query: 262 TKRI 265
             RI
Sbjct: 505 RARI 508



 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 27/126 (21%)

Query: 19  WKDKIIKGNSISVLEKLPAKS-----VDLIFADPPYNLQLNGQLY--------------- 58
           W++++I G+S+ V+  L  +      V  I+ DPPY ++ N                   
Sbjct: 161 WQNRMILGDSLQVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGNTAH 220

Query: 59  ---RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
               P+   V A  D+W       +Y  + R  ++  R +L  +G+++V     N+ R+ 
Sbjct: 221 ITREPEQ--VKAFRDTWR--DGIHSYLTYLRDRVIVFRDLLNESGSVFVQIGVENVHRVR 276

Query: 116 TMLQNL 121
            +L  +
Sbjct: 277 AVLDEV 282


>gi|317132770|ref|YP_004092084.1| ParB domain protein nuclease [Ethanoligenens harbinense YUAN-3]
 gi|315470749|gb|ADU27353.1| ParB domain protein nuclease [Ethanoligenens harbinense YUAN-3]
          Length = 420

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP+ KP  L++ ++  ST    ++LD F GS ++     ++ R   G+E++  Y+D+A  
Sbjct: 325 HPSSKPVPLIAYLIEQSTATNGLVLDGFLGSASTLIACDQIGRICYGVELEPKYVDVAVV 384

Query: 264 R 264
           R
Sbjct: 385 R 385


>gi|281418289|ref|ZP_06249309.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum
           JW20]
 gi|281409691|gb|EFB39949.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum
           JW20]
          Length = 432

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 33/63 (52%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HP   P  L  R +   +  G I+L+PF GSGT+   A++  R    +E+   Y D+A
Sbjct: 356 KEHPAMFPVELPWRCIKMHSDNGGIVLEPFSGSGTTIIAAEQTERKCYAMELSPVYCDLA 415

Query: 262 TKR 264
            KR
Sbjct: 416 VKR 418


>gi|169834647|ref|YP_001693301.1| DNA methylase [Clostridium botulinum B1 str. Okra]
 gi|169123195|gb|ACA47030.1| DNA methylase [Clostridium botulinum B1 str. Okra]
          Length = 254

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 102/260 (39%), Gaps = 48/260 (18%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           GN + +++K+  KS+D++ +D P+ +                  + WDK   FE      
Sbjct: 10  GNCLEIMKKIDDKSIDMVLSDLPFGM----------------TNNEWDKAIPFEP----- 48

Query: 86  RAWLLACRRVLKPNGTLWVIGS-------------YHNIFRIGTMLQNLNFWILNDIVWR 132
             W     R+ K N ++ ++ +             Y+    I    +  NF   N +  R
Sbjct: 49  -MW-QEINRIAKDNASIALMAAGVFTSELVVSNKKYYRYSWIWKPKEKSNFLNANRMPLR 106

Query: 133 KSNPMPNF-RGRRFQNAHETLIWASPSPKAKGYTF---NYDALKAANEDVQMRSDW---L 185
           +   +P F +     N  +T     P  K K +T    NY   K   E       +   +
Sbjct: 107 QHIDIPIFYKNLPVYNPQKTY-GHKPVKKYKQHTTAGANYGKTKIGMEGGGQTDRYPTTI 165

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           I I   + +++    +++HPTQKP  L   ++ + T    I LD   GS           
Sbjct: 166 IDIPYNTIKIK----DRIHPTQKPIELYEYLIKTYTNEEGIALDFTAGSCVLAEACINTN 221

Query: 246 RSFIGIEMKQDYIDIATKRI 265
           R++I IE ++ Y + A +RI
Sbjct: 222 RNYICIEKEKKYCNKAKERI 241


>gi|16763737|ref|NP_459352.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|167992192|ref|ZP_02573290.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|197265322|ref|ZP_03165396.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|198243123|ref|YP_002214310.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|20141750|sp|P40814|T3MO_SALTY RecName: Full=Type III restriction-modification system StyLTI
           enzyme mod; Short=M.StyLTI; AltName: Full=StyLTI
           methyltransferase
 gi|16418858|gb|AAL19311.1| DNA methylase; restriction system [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|197243577|gb|EDY26197.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197937639|gb|ACH74972.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205329535|gb|EDZ16299.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261245640|emb|CBG23436.1| type III restriction-modification system enzyme (StyLTI)
           modification methylase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267992052|gb|ACY86937.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301156969|emb|CBW16452.1| type III restriction-modification system enzyme (StyLTI)
           modification methylase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312911388|dbj|BAJ35362.1| type III restriction-modification system StyLTI enzyme Mod
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
 gi|321225075|gb|EFX50136.1| Type III restriction-modification system methylation subunit
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|323128670|gb|ADX16100.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|326622056|gb|EGE28401.1| DNA methylase [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
 gi|332987305|gb|AEF06288.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 652

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 27/157 (17%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L    A +VD+I+ DPPYN   +G +Y 
Sbjct: 95  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY- 147

Query: 60  PDH------SLVD---------AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
           PDH      +L D         A   S    S+  A+ +F    L   R++LK  G +++
Sbjct: 148 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 207

Query: 105 IGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMPN 139
               +    +  M+  +      + +++W++   + N
Sbjct: 208 SIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISN 244


>gi|200389670|ref|ZP_03216281.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199602115|gb|EDZ00661.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 652

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 27/157 (17%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L    A +VD+I+ DPPYN   +G +Y 
Sbjct: 95  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY- 147

Query: 60  PDH------SLVD---------AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
           PDH      +L D         A   S    S+  A+ +F    L   R++LK  G +++
Sbjct: 148 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 207

Query: 105 IGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMPN 139
               +    +  M+  +      + +++W++   + N
Sbjct: 208 SIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISN 244


>gi|168237461|ref|ZP_02662519.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194735291|ref|YP_002113386.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194710793|gb|ACF90014.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197289591|gb|EDY28954.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
          Length = 652

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 27/157 (17%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L    A +VD+I+ DPPYN   +G +Y 
Sbjct: 95  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY- 147

Query: 60  PDH------SLVD---------AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
           PDH      +L D         A   S    S+  A+ +F    L   R++LK  G +++
Sbjct: 148 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 207

Query: 105 IGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMPN 139
               +    +  M+  +      + +++W++   + N
Sbjct: 208 SIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISN 244


>gi|194443439|ref|YP_002039595.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194402102|gb|ACF62324.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 652

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 27/157 (17%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L    A +VD+I+ DPPYN   +G +Y 
Sbjct: 95  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY- 147

Query: 60  PDH------SLVD---------AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
           PDH      +L D         A   S    S+  A+ +F    L   R++LK  G +++
Sbjct: 148 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 207

Query: 105 IGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMPN 139
               +    +  M+  +      + +++W++   + N
Sbjct: 208 SIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISN 244


>gi|204927143|ref|ZP_03218345.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204323808|gb|EDZ09003.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 652

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 27/157 (17%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L    A +VD+I+ DPPYN   +G +Y 
Sbjct: 95  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY- 147

Query: 60  PDH------SLVD---------AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
           PDH      +L D         A   S    S+  A+ +F    L   R++LK  G +++
Sbjct: 148 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 207

Query: 105 IGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMPN 139
               +    +  M+  +      + +++W++   + N
Sbjct: 208 SIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISN 244


>gi|16759336|ref|NP_454953.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
 gi|29142892|ref|NP_806234.1| Type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|197250580|ref|YP_002145337.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|213162991|ref|ZP_03348701.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E00-7866]
 gi|213417458|ref|ZP_03350600.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
 gi|213425167|ref|ZP_03357917.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E02-1180]
 gi|289826835|ref|ZP_06545745.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-3139]
 gi|25347390|pir||AD0546 site-specific DNA-methyltransferase (adenine-specific) (EC
           2.1.1.72) - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 gi|16501627|emb|CAD08812.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29138524|gb|AAO70094.1| Type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|197214283|gb|ACH51680.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
          Length = 652

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 27/157 (17%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L    A +VD+I+ DPPYN   +G +Y 
Sbjct: 95  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY- 147

Query: 60  PDH------SLVD---------AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
           PDH      +L D         A   S    S+  A+ +F    L   R++LK  G +++
Sbjct: 148 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 207

Query: 105 IGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMPN 139
               +    +  M+  +      + +++W++   + N
Sbjct: 208 SIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISN 244


>gi|168240164|ref|ZP_02665096.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194451308|ref|YP_002044388.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194409612|gb|ACF69831.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|205340405|gb|EDZ27169.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 652

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 27/157 (17%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L    A +VD+I+ DPPYN   +G +Y 
Sbjct: 95  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY- 147

Query: 60  PDH------SLVD---------AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
           PDH      +L D         A   S    S+  A+ +F    L   R++LK  G +++
Sbjct: 148 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 207

Query: 105 IGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMPN 139
               +    +  M+  +      + +++W++   + N
Sbjct: 208 SIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISN 244


>gi|291439977|ref|ZP_06579367.1| DNA methylase N-4/N-6 [Streptomyces ghanaensis ATCC 14672]
 gi|291342872|gb|EFE69828.1| DNA methylase N-4/N-6 [Streptomyces ghanaensis ATCC 14672]
          Length = 944

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 40/66 (60%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
            +K++  Q    ++ R ++ +T PGD++LDP  GSGT+  VA++  R +I I+  +  I 
Sbjct: 472 ADKIYVVQTNTKVIERCMLMATDPGDLVLDPTCGSGTTAYVAEQWGRRWITIDTSRVAIA 531

Query: 260 IATKRI 265
           +A  R+
Sbjct: 532 LARHRL 537


>gi|168819047|ref|ZP_02831047.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205344195|gb|EDZ30959.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320084629|emb|CBY94420.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 652

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 27/157 (17%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L    A +VD+I+ DPPYN   +G +Y 
Sbjct: 95  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY- 147

Query: 60  PDH------SLVD---------AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
           PDH      +L D         A   S    S+  A+ +F    L   R++LK  G +++
Sbjct: 148 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 207

Query: 105 IGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMPN 139
               +    +  M+  +      + +++W++   + N
Sbjct: 208 SIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISN 244


>gi|161615469|ref|YP_001589434.1| hypothetical protein SPAB_03240 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167551843|ref|ZP_02345596.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|161364833|gb|ABX68601.1| hypothetical protein SPAB_03240 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|205323458|gb|EDZ11297.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
          Length = 652

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 27/157 (17%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L    A +VD+I+ DPPYN   +G +Y 
Sbjct: 95  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY- 147

Query: 60  PDH------SLVD---------AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
           PDH      +L D         A   S    S+  A+ +F    L   R++LK  G +++
Sbjct: 148 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 207

Query: 105 IGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMPN 139
               +    +  M+  +      + +++W++   + N
Sbjct: 208 SIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISN 244


>gi|168232316|ref|ZP_02657374.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194469113|ref|ZP_03075097.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194455477|gb|EDX44316.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|205333351|gb|EDZ20115.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 652

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 27/157 (17%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L    A +VD+I+ DPPYN   +G +Y 
Sbjct: 95  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY- 147

Query: 60  PDH------SLVD---------AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
           PDH      +L D         A   S    S+  A+ +F    L   R++LK  G +++
Sbjct: 148 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 207

Query: 105 IGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMPN 139
               +    +  M+  +      + +++W++   + N
Sbjct: 208 SIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISN 244


>gi|238911510|ref|ZP_04655347.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Tennessee
           str. CDC07-0191]
          Length = 652

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 27/157 (17%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L    A +VD+I+ DPPYN   +G +Y 
Sbjct: 95  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY- 147

Query: 60  PDH------SLVD---------AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
           PDH      +L D         A   S    S+  A+ +F    L   R++LK  G +++
Sbjct: 148 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 207

Query: 105 IGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMPN 139
               +    +  M+  +      + +++W++   + N
Sbjct: 208 SIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISN 244


>gi|207855839|ref|YP_002242490.1| type III restriction-modification system enzyme modification
           methylase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|206707642|emb|CAR31926.1| type III restriction-modification system enzyme (StyLTI)
           modification methylase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 652

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 27/157 (17%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L    A +VD+I+ DPPYN   +G +Y 
Sbjct: 95  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY- 147

Query: 60  PDH------SLVD---------AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
           PDH      +L D         A   S    S+  A+ +F    L   R++LK  G +++
Sbjct: 148 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 207

Query: 105 IGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMPN 139
               +    +  M+  +      + +++W++   + N
Sbjct: 208 SIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISN 244


>gi|168465433|ref|ZP_02699315.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|195631678|gb|EDX50198.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
          Length = 652

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 27/157 (17%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L    A +VD+I+ DPPYN   +G +Y 
Sbjct: 95  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY- 147

Query: 60  PDH------SLVD---------AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
           PDH      +L D         A   S    S+  A+ +F    L   R++LK  G +++
Sbjct: 148 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 207

Query: 105 IGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMPN 139
               +    +  M+  +      + +++W++   + N
Sbjct: 208 SIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISN 244


>gi|320162134|ref|YP_004175359.1| hypothetical protein ANT_27330 [Anaerolinea thermophila UNI-1]
 gi|319995988|dbj|BAJ64759.1| hypothetical protein ANT_27330 [Anaerolinea thermophila UNI-1]
          Length = 263

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 54/124 (43%), Gaps = 32/124 (25%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           E  ++I  G+S+ VL+K+P  S+DLIF  PPYN  L  +     H         WD +  
Sbjct: 145 EMTNQIFCGDSLEVLKKIPDNSIDLIFTSPPYNFGLEYERQDDAH--------KWDLY-- 194

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWV---------IGSYHNIFRIGTMLQNLNFWILND 128
           FE       A    C RVLK  G + V         I S+H I          NF+I   
Sbjct: 195 FEK----LFAIFDECIRVLKFGGRIAVNIQPLFSDYIPSHHLI---------SNFFISRR 241

Query: 129 IVWR 132
           ++W+
Sbjct: 242 MIWK 245


>gi|56414486|ref|YP_151561.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197363407|ref|YP_002143044.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|56128743|gb|AAV78249.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197094884|emb|CAR60419.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
          Length = 652

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 27/157 (17%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L    A +VD+I+ DPPYN   +G +Y 
Sbjct: 95  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY- 147

Query: 60  PDH------SLVD---------AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
           PDH      +L D         A   S    S+  A+ +F    L   R++LK  G +++
Sbjct: 148 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 207

Query: 105 IGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMPN 139
               +    +  M+  +      + +++W++   + N
Sbjct: 208 SIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISN 244


>gi|17225524|gb|AAL37453.1|AF328916_3 type II DNA modification enzyme [Helicobacter pylori]
          Length = 343

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 32/49 (65%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           +PT+K   LL  I+ +S+  G I+LD F GSGT+   A  L+R FIGI+
Sbjct: 263 YPTEKNAQLLDLIIKTSSNKGSIVLDCFCGSGTTLKSAFLLQRKFIGID 311


>gi|169835025|ref|YP_001715839.1| DNA methylase [Clostridium botulinum A3 str. Loch Maree]
 gi|169409132|gb|ACA57542.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 254

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 59/260 (22%), Positives = 102/260 (39%), Gaps = 48/260 (18%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           GN + +++K+  KS+D++ +D P+ +  N                 WDK   FE      
Sbjct: 10  GNCLEIMKKIDDKSIDMVLSDLPFGMTNN----------------EWDKAIPFEP----- 48

Query: 86  RAWLLACRRVLKPNGTLWVIGS-------------YHNIFRIGTMLQNLNFWILNDIVWR 132
             W     R+ K N ++ ++ +             Y+    I    +  NF   N +  R
Sbjct: 49  -MWQ-EINRIAKDNASIALMAAGVFTSELVVSNKKYYRYSWIWKPKEKSNFLNANRMPLR 106

Query: 133 KSNPMPNF-RGRRFQNAHETLIWASPSPKAKGYTF---NYDALKAANEDVQMRSDW---L 185
           +   +P F +     N  +T     P  K K +T    NY   K   E       +   +
Sbjct: 107 QHIDIPIFYKNLPVYNPQKTY-GHKPVKKYKQHTTAGANYGKTKIGMEGGGQTDRYPTTV 165

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           I I   + +++    +++HPTQKP  L   ++ + T    I LD   GS           
Sbjct: 166 IDIPYNTIKIK----DRIHPTQKPIELYEYLIKTYTNEEGIALDFTAGSCVLAEACINTN 221

Query: 246 RSFIGIEMKQDYIDIATKRI 265
           R++I IE ++ Y + A +RI
Sbjct: 222 RNYICIEKEKKYCNKAKERI 241


>gi|258654745|ref|YP_003203901.1| DNA methylase N-4/N-6 domain-containing protein [Nakamurella
           multipartita DSM 44233]
 gi|258557970|gb|ACV80912.1| DNA methylase N-4/N-6 domain protein [Nakamurella multipartita DSM
           44233]
          Length = 352

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 38/171 (22%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           +++ G++++ L  L   S+D++   PPY    +    GQ+    H       D W     
Sbjct: 9   RLLIGDALTELRTLADASIDMVLTSPPYFRLRDYGQGGQIGLEPH------VDDW----- 57

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWV-IG-SYHNIFRIGTMLQNL-------------N 122
            +      R      RRVL+P G+LW+ +G +Y    R G   ++L             +
Sbjct: 58  VQRLLPVMR----ELRRVLRPTGSLWLNLGDTYATHLREGAERKSLLLGPERLALAMAAD 113

Query: 123 FWIL-NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
            WIL N IVW K+NP P     R     E +   +  P+A    F+ DA++
Sbjct: 114 GWILRNKIVWAKTNPRPTSVPDRLACTWEPVYLFAAGPRA---FFDIDAIR 161



 Score = 44.7 bits (104), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 31/44 (70%), Gaps = 1/44 (2%)

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           +PG ++LDPF G+GT+   A++L R ++GIE+  DY  +  +R+
Sbjct: 290 EPG-VVLDPFLGAGTTALAAERLGRDWVGIELNPDYAALTIERL 332


>gi|15676625|ref|NP_273769.1| N-6 adenine-specific DNA methylase [Neisseria meningitidis MC58]
 gi|7225954|gb|AAF41140.1| N-6 adenine-specific DNA methylase [Neisseria meningitidis MC58]
 gi|308388917|gb|ADO31237.1| N-6 adenine-specific DNA methylase HgaI [Neisseria meningitidis
           alpha710]
 gi|325127849|gb|EGC50756.1| hypothetical protein NMXN1568_1412 [Neisseria meningitidis N1568]
 gi|325129890|gb|EGC52693.1| putative DNA methylase [Neisseria meningitidis OX99.30304]
 gi|325133758|gb|EGC56414.1| putative DNA methylase [Neisseria meningitidis M13399]
 gi|325136049|gb|EGC58659.1| putative DNA methylase [Neisseria meningitidis M0579]
 gi|325140117|gb|EGC62646.1| putative DNA methylase [Neisseria meningitidis CU385]
 gi|325144069|gb|EGC66377.1| putative DNA methylase [Neisseria meningitidis M01-240013]
 gi|325200588|gb|ADY96043.1| putative DNA methylase [Neisseria meningitidis H44/76]
 gi|325202476|gb|ADY97930.1| putative DNA methylase [Neisseria meningitidis M01-240149]
 gi|325206430|gb|ADZ01883.1| putative DNA methylase [Neisseria meningitidis M04-240196]
 gi|325207772|gb|ADZ03224.1| putative DNA methylase [Neisseria meningitidis NZ-05/33]
          Length = 216

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 90/255 (35%), Gaps = 60/255 (23%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           +++ ++ + P K  DL   DPPY + LN      D+         WD     + Y  F  
Sbjct: 8   DNMILMSRYPDKYFDLAIVDPPYGI-LNKTKRGGDYKFNMNEYSQWD-IKPDQTY--FNE 63

Query: 87  AWLLACRRVL---KPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP--MPNFR 141
            + ++  +++      G LW+   Y+  F                I+W K+ P  + NF 
Sbjct: 64  LFRVSKNQIIWGGNYFGELWLRSEYNKGF----------------IIWDKNQPETLNNF- 106

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
                 +   + W+S    +K + F+                              K+  
Sbjct: 107 ------SMAEMAWSSFDRPSKIFRFSV----------------------------RKNRN 132

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HPTQKP  L   +L    K GD ILD   GSGT        +      E+  DY   +
Sbjct: 133 KTHPTQKPVELYQWLLKMYAKQGDKILDTHLGSGTLAIACCIAQFDLTACEINSDYYQQS 192

Query: 262 TKRIASVQPLGNIEL 276
            ++I +  P   I  
Sbjct: 193 IEKIKNNLPEARISF 207


>gi|167585152|ref|ZP_02377540.1| putative modification methylase [Burkholderia ubonensis Bu]
          Length = 963

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 38/65 (58%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           EK +  Q     + R L+ +T PGD++LDP  GSGT+  VA++  R +I I+  +  + +
Sbjct: 443 EKTYVVQSGIKAVQRCLLMTTDPGDLVLDPTCGSGTTAYVAEQWGRRWITIDTSRVALAL 502

Query: 261 ATKRI 265
           A  RI
Sbjct: 503 ARARI 507



 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 25/125 (20%)

Query: 19  WKDKIIKGNSISVLEKLPAKS-----VDLIFADPPYNLQLN-----------------GQ 56
           W++++I G+S+ V+  L  +      V  I+ DPPY ++ N                 G 
Sbjct: 142 WQNRMILGDSLQVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGNAGH 201

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
           + R +   V A  D+W       +Y  + R  L+  R +L  +G+++V     N+ R+  
Sbjct: 202 ITR-EPEQVKAFRDTWR--DGIHSYLTYLRDRLMVARDLLTESGSIFVQIGDENVHRVRA 258

Query: 117 MLQNL 121
           +L  +
Sbjct: 259 VLDEV 263


>gi|190890137|ref|YP_001976679.1| DNA methylase [Rhizobium etli CIAT 652]
 gi|190695416|gb|ACE89501.1| putative DNA methylase protein [Rhizobium etli CIAT 652]
          Length = 230

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 35/63 (55%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           P AL+S +L   TKPGD++ DPF G GT+  V ++  R   GIE  +   +   +RI + 
Sbjct: 41  PGALVSALLDRFTKPGDVVFDPFVGLGTTFFVCEQRGRLPYGIEADRQRYEWVRERITAK 100

Query: 269 QPL 271
             L
Sbjct: 101 HHL 103


>gi|170290286|ref|YP_001737102.1| DNA methylase N-4/N-6 domain-containing protein [Candidatus
           Korarchaeum cryptofilum OPF8]
 gi|170174366|gb|ACB07419.1| DNA methylase N-4/N-6 domain protein [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 565

 Score = 45.1 bits (105), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           P  L+   +     P  ++LDPF GSGT G VA +L R  I IE+  ++ D+  KR
Sbjct: 493 PTKLVETAMRMGCPPRGVVLDPFAGSGTVGEVAMRLNRKAILIELTPEFADLIRKR 548



 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 64/161 (39%), Gaps = 19/161 (11%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W  K+I G+   VL +LP   +D +   PPY +Q +     PD    +   + + K  + 
Sbjct: 17  WVPKLILGDVREVLPRLPDNFIDCVITSPPYWMQRD--YGHPDQIGREGTPEEYVKTIA- 73

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR--------IGTMLQNLNFWILNDIV 130
              D F        R  LK   T+++   Y  +          I   ++   F + N I+
Sbjct: 74  ---DIFE-----LIRPKLKRTATIFLNVGYKYLNERLILIPEMIALEMERRGFLLRNKII 125

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
           W K N MP     R  N +E +++       + Y FN + +
Sbjct: 126 WWKPNAMPTPARNRLNNVYEPVLFFIRDDGKEVYYFNLEEI 166


>gi|307564728|ref|ZP_07627256.1| DNA (cytosine-5-)-methyltransferase [Prevotella amnii CRIS 21A-A]
 gi|307346450|gb|EFN91759.1| DNA (cytosine-5-)-methyltransferase [Prevotella amnii CRIS 21A-A]
          Length = 338

 Score = 45.1 bits (105), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 34/53 (64%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++PTQK E LL  I+ +S+    I+LD F GSGT+   A +L R +IGI+  +
Sbjct: 261 IYPTQKNEDLLHFIIKASSSINSIVLDCFAGSGTTLKAANRLGRKWIGIDQSE 313


>gi|325914237|ref|ZP_08176587.1| adenine specific DNA methylase Mod [Xanthomonas vesicatoria ATCC
           35937]
 gi|325539492|gb|EGD11138.1| adenine specific DNA methylase Mod [Xanthomonas vesicatoria ATCC
           35937]
          Length = 978

 Score = 45.1 bits (105), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           +GS    N D  K++  Q    ++ R ++ +T PGD++LDP  GSGT+  V+++  R +I
Sbjct: 449 TGSAGFSNSD-PKIYVVQTDSLVVQRCILMTTDPGDLVLDPTCGSGTTATVSEQWGRRWI 507

Query: 250 GIEMKQDYIDIATKRI 265
             +  +  + +A  RI
Sbjct: 508 TTDTSRVALALARARI 523



 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 29/141 (20%)

Query: 19  WKDKIIKGNSISVLEKLPAKS-----VDLIFADPPYNLQLNGQLY-----------RPDH 62
           W+++ I G+S+ V+  L  +      V  I+ DPPY ++ N                 DH
Sbjct: 161 WQNRFILGDSLQVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGNADH 220

Query: 63  -----SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
                  V A  D+W       +Y  + R  L+  R +L  +G+++V     N+ R+  +
Sbjct: 221 ITREPEQVKAFRDTWR--DGIHSYLTYLRDRLMVARDLLTESGSIFVQIGGENLHRVRAV 278

Query: 118 LQNL----NFWILNDIVWRKS 134
           +  +    NF    +I++RK+
Sbjct: 279 MDEVFGEQNF--CAEIIFRKT 297


>gi|169841892|ref|ZP_02875001.1| hypothetical protein cdivTM_32335 [candidate division TM7
           single-cell isolate TM7a]
          Length = 35

 Score = 45.1 bits (105), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 25/34 (73%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
           W IP+C+G+ERL++ +G KLH TQKPE    ++ 
Sbjct: 2   WNIPVCNGNERLKDTNGNKLHSTQKPENYCIKLF 35


>gi|308064279|gb|ADO06166.1| type III R-M system modification enzyme [Helicobacter pylori
           Sat464]
          Length = 656

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 191 GSERLRNK-DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
           G+  +RN  +GEK+    KP  L+SR++  ST  GDIILD F GSGT+ 
Sbjct: 392 GANEVRNIFNGEKIFSYPKPTKLISRLIELSTNEGDIILDFFAGSGTTA 440


>gi|217034286|ref|ZP_03439703.1| hypothetical protein HP9810_885g17 [Helicobacter pylori 98-10]
 gi|216943258|gb|EEC22723.1| hypothetical protein HP9810_885g17 [Helicobacter pylori 98-10]
          Length = 461

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 191 GSERLRNK-DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           G+  +RN  +GEK+    KP  L+SR++  ST  GDIILD F GSGT+     +  +S
Sbjct: 392 GANEVRNIFNGEKIFSYPKPTKLISRLIELSTNEGDIILDFFAGSGTTAHAVLESNKS 449


>gi|325662079|ref|ZP_08150698.1| hypothetical protein HMPREF0490_01436 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471742|gb|EGC74961.1| hypothetical protein HMPREF0490_01436 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 420

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 60/286 (20%), Positives = 113/286 (39%), Gaps = 70/286 (24%)

Query: 20  KDKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G++ S   V   +  K  +LI  DPPYN+              D ++   DK  
Sbjct: 171 RHRLMCGDATSAEDVAALMDGKKANLIVTDPPYNVAFESS---------DGLSIKNDKME 221

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGS------YHNIF-RIGTMLQNLNFWILNDI 129
           + + Y+ F  A        L+  G  +V  +      +   F   G  L     W+ N +
Sbjct: 222 NSKFYE-FLLAAFKNMADNLEKGGAAYVFHADTEGLNFRKAFIDAGFHLSGCCIWVKNSL 280

Query: 130 VWRKSNPMPNFRGRRFQNAHETLI----------WASPSPKAKGYTFNYDALKAANEDVQ 179
           V  +S+         +Q  HE ++          W+  + +++   +N+D  K       
Sbjct: 281 VLGRSD---------YQWQHEPVLYGFLQNGKHYWSKNAGRSQTTIWNFDKPK------- 324

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
                           +NK+    HPT KP  LL+  + +S++   I++D F GSG++  
Sbjct: 325 ----------------KNKN----HPTSKPLDLLAYPIGNSSQENAIVIDTFGGSGSTLM 364

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE--LTVLTGKR 283
             ++  R    +EM + Y  +  +R   V+  G+ E    +  GK+
Sbjct: 365 TCEQTNRICHTMEMDEKYASVILRRY--VEDTGDAENVFVIRDGKK 408


>gi|237720903|ref|ZP_04551384.1| LOW QUALITY PROTEIN: modification methylase [Bacteroides sp. 2_2_4]
 gi|229449738|gb|EEO55529.1| LOW QUALITY PROTEIN: modification methylase [Bacteroides sp. 2_2_4]
          Length = 165

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 5/77 (6%)

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
           C+  ER     G  +H  QKP  L + IL  + K GD I D   GSG+S   A  L   F
Sbjct: 71  CTIGER-----GGNIHRCQKPVKLYAEILRKNAKEGDKIFDSHLGSGSSRIAAYGLGFDF 125

Query: 249 IGIEMKQDYIDIATKRI 265
              E+ ++Y +   +R 
Sbjct: 126 YATEIDEEYFEAQEERF 142


>gi|325564022|gb|ADZ31409.1| M.SpeI [Sphaerotilus natans]
          Length = 78

 Score = 44.7 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 4/59 (6%)

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
           +I+LDPF GSGT+   AK+L  +++GIE+   Y  IA +R+     +   E + LTG++
Sbjct: 13  NIVLDPFAGSGTTLVAAKQLGLTYLGIEINPTYAAIAKQRLG----IDKAEPSSLTGQQ 67


>gi|316983709|gb|EFV62690.1| DNA methylase family protein [Neisseria meningitidis H44/76]
          Length = 207

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 34/79 (43%)

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K+  K HPTQKP  L   +L    K GD ILD   GSGT        +      E+  DY
Sbjct: 120 KNRNKTHPTQKPVELYQWLLKMYAKQGDKILDTHLGSGTLAIACCIAQFDLTACEINSDY 179

Query: 258 IDIATKRIASVQPLGNIEL 276
              + ++I +  P   I  
Sbjct: 180 YQQSIEKIKNNLPEARISF 198


>gi|148257835|ref|YP_001242420.1| adenine-specific DNA-methyltransferase [Bradyrhizobium sp. BTAi1]
 gi|146410008|gb|ABQ38514.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Bradyrhizobium sp. BTAi1]
          Length = 396

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           R++ G + HPT KP  ++  ++   + PG  +LDPF GSGT+G  A    R  I +E+ +
Sbjct: 291 RDRAGSR-HPTVKPLDVMQWLVRLVSMPGQTVLDPFAGSGTTGEAALAEGRRSILVELDK 349

Query: 256 DYIDIATKRI 265
            + D    R+
Sbjct: 350 QFQDDIADRM 359


>gi|2735920|gb|AAC46044.1| Tsp45I methyltransferase [Thermus sp. YS45]
          Length = 413

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 38/62 (61%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +PT+K   +L  I+ + +  GD++LDPF GSGT+   +  L+R  IGI+   + +   T+
Sbjct: 335 YPTEKNLDMLKLIVQTGSNEGDLVLDPFAGSGTTLIASPLLKRRSIGIDASWEAVKAFTR 394

Query: 264 RI 265
           R+
Sbjct: 395 RV 396


>gi|57234145|ref|YP_181807.1| DNA methylase [Dehalococcoides ethenogenes 195]
 gi|57224593|gb|AAW39650.1| DNA methylase [Dehalococcoides ethenogenes 195]
          Length = 421

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 59/273 (21%), Positives = 102/273 (37%), Gaps = 64/273 (23%)

Query: 20  KDKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G++ S   V + +  K  +LI  DPPY +              D +T   D   
Sbjct: 168 RHRLMCGDATSPEDVEKLMDGKKANLILTDPPYGVSFKAS---------DGLTIQNDSLK 218

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI-FR-----IGTMLQNLNFWILNDIV 130
             E Y     A+      + K             + FR      G  L  +  W+ N +V
Sbjct: 219 GEEFYKFLLAAFKNMADHLEKGGAAYCFHADTEGLTFRKAFIDAGFHLAGVCIWVKNSLV 278

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWA------SP--SPKAKGYTFNYDALKAANEDVQMRS 182
             +S+         +Q  HE +++        P  S + +   +NYD  K          
Sbjct: 279 LGRSD---------YQWQHEPVLYGFLQNGKHPWYSDRKQTTIWNYDKPK---------- 319

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
                        RNKD    HPT KP  LL   + +S++   +++D F GSG++    +
Sbjct: 320 -------------RNKD----HPTSKPLDLLGYPIKNSSQENSVVIDTFGGSGSTLMACE 362

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           +L R    +E+   Y  +  +R   V+  G+ E
Sbjct: 363 QLNRICCMMELDPKYASVILRRY--VEDTGDTE 393


>gi|50843057|ref|YP_056284.1| ParB family DNA methylase [Propionibacterium acnes KPA171202]
 gi|50840659|gb|AAT83326.1| DNA methylase (ParB family) [Propionibacterium acnes KPA171202]
          Length = 416

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 91/236 (38%), Gaps = 35/236 (14%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           +  K  +L+  DPPYN+              D ++   DK S+   Y+ F  A       
Sbjct: 184 MDGKKANLVLTDPPYNVAFESS---------DGLSIKNDKMSADGFYE-FLLAAFTQMAG 233

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNAHETLI 153
           V +   + +V  +           Q+  F +    +W K + +    GR  +Q  HE ++
Sbjct: 234 VCEKGASAYVFHADTEGLNFRRAFQDAGFKLSGCCIWVKDSLV---LGRSPYQWQHEPVL 290

Query: 154 WA-SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
           +    + K   Y            D +  + W        +  RN D    HPT KP  L
Sbjct: 291 YGWVKTGKHTWYA-----------DRKQTTVWRF-----DKPRRNAD----HPTSKPLDL 330

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           L+  + +ST+   I+LD F GSG++    +   R    +E+ + Y  +  +R A  
Sbjct: 331 LAYPIGNSTQANAIVLDTFAGSGSTLMACEATNRIAYCMELDEKYASVILRRYADA 386


>gi|126011082|ref|YP_001039907.1| putative N-6 adenine-specific DNA methylase [Streptococcus phage
           phi3396]
 gi|124389351|gb|ABN10793.1| putative N-6 adenine-specific DNA methylase [Streptococcus phage
           phi3396]
          Length = 224

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 36/64 (56%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           ++HPTQKP  L   +L +  K GD ILD   GS +S    ++L   ++G E+      +A
Sbjct: 151 RIHPTQKPVNLYLWLLQNYAKDGDKILDTHVGSASSLIACEELGFDYVGCELDSGIYTLA 210

Query: 262 TKRI 265
           ++R+
Sbjct: 211 SERL 214


>gi|213580225|ref|ZP_03362051.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
          Length = 282

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 27/157 (17%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L    A +VD+I+ DPPYN   +G +Y 
Sbjct: 47  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY- 99

Query: 60  PDH------SLVD---------AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
           PDH      +L D         A   S    S+  A+ +F    L   R++LK  G +++
Sbjct: 100 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 159

Query: 105 IGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMPN 139
               +    +  M+  +      + +++W++   + N
Sbjct: 160 SIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISN 196


>gi|213619415|ref|ZP_03373241.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-2068]
          Length = 339

 Score = 44.7 bits (104), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 25/120 (20%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L    A +VD+I+ DPPYN   +G +Y 
Sbjct: 2   EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY- 54

Query: 60  PDH------SLVD---------AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
           PDH      +L D         A   S    S+  A+ +F    L   R++LK  G +++
Sbjct: 55  PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 114


>gi|91200064|emb|CAJ73107.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 266

 Score = 44.7 bits (104), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 38/66 (57%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           LR ++  + +    P  ++  +L   T+PGD+++DP  G+GT+  VAK+L R  +G ++ 
Sbjct: 21  LREQEHAQNYKGATPSYIIWNLLQRYTRPGDVVIDPMCGAGTTLDVAKELNREALGFDLN 80

Query: 255 QDYIDI 260
               DI
Sbjct: 81  PTRKDI 86


>gi|219849326|ref|YP_002463759.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
           aggregans DSM 9485]
 gi|219543585|gb|ACL25323.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aggregans DSM
           9485]
          Length = 368

 Score = 44.7 bits (104), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 33/50 (66%)

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
           T+PG+ +LDPF GSGT+   A++L R  +G+E++   ++     +A+ QP
Sbjct: 162 TRPGEWVLDPFAGSGTTLIEARRLGRHAVGLELQATMVEHTRALLAAEQP 211


>gi|188997625|ref|YP_001931876.1| DNA methylase N-4/N-6 domain protein [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932692|gb|ACD67322.1| DNA methylase N-4/N-6 domain protein [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 524

 Score = 44.7 bits (104), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 11/99 (11%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP--EALLSRILVSST---- 221
           YD     N+  +   +W +     SE  R K   ++HP +      L+   L S T    
Sbjct: 59  YDKTYKINQQKEENINWSLSFAEYSEAERTKHVHRIHPYKGKFIPQLVEYFLDSHTDSFK 118

Query: 222 -----KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                K GDI+LDPF GSGT+   A +L    +G+++ Q
Sbjct: 119 KEVYFKAGDIVLDPFCGSGTTLVQANELGIHAVGVDISQ 157


>gi|163784466|ref|ZP_02179340.1| type II DNA modification methyltransferase M.TdeIII [Hydrogenivirga
           sp. 128-5-R1-1]
 gi|159880263|gb|EDP73893.1| type II DNA modification methyltransferase M.TdeIII [Hydrogenivirga
           sp. 128-5-R1-1]
          Length = 241

 Score = 44.7 bits (104), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKP--EALLSRILVSSTKPGDIILDPFFGSGT 236
           ++  DW IP     ER R K   +LHP +      L+   L    K GDI+LDPF GSGT
Sbjct: 82  ELSFDW-IP-----ERERTKHVHRLHPYKGKFIPQLVEYFLKRYFKEGDIVLDPFVGSGT 135

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278
           +   A ++    IGI++ +    I   + A+V  LG ++  +
Sbjct: 136 TLIQANEMNIHSIGIDISEFNTIITEVKFANVN-LGELQRKI 176


>gi|291556505|emb|CBL33622.1| DNA modification methylase [Eubacterium siraeum V10Sc8a]
          Length = 412

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 52/269 (19%), Positives = 97/269 (36%), Gaps = 71/269 (26%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           +     +L+  DPPYN+   G   +  +          D  +  + Y+ F  A       
Sbjct: 185 MDGTKANLVITDPPYNVNYEGSAGKIKN----------DNMAGEKFYE-FLLAAFKNMES 233

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM----------------- 137
           V+  + +++V  +            +  F++    +W+K + +                 
Sbjct: 234 VMAADASIYVFHADTEGLNFRRAFADAGFYLSGCCIWKKQSLVLGRSPYQWQHEPVLYGW 293

Query: 138 -PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
             N R + +    ET IW    PK                                    
Sbjct: 294 KKNGRHQWYTGRKETTIWEFDKPK------------------------------------ 317

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
            K+GE  HPT KP  LL+  + +S+    ++LDPF GSG++    ++  R    IE+ + 
Sbjct: 318 -KNGE--HPTMKPIPLLAYPIGNSSMANSVVLDPFGGSGSTLIACEQTDRICRTIELDEK 374

Query: 257 YIDIATKRIASVQPLGNIE-LTVLTGKRT 284
           + D+   R   ++  G+ + ++VL   RT
Sbjct: 375 FCDVIVNRY--IEQAGSADSVSVLRDGRT 401


>gi|310642922|ref|YP_003947680.1| adenine methyltransferase, putative [Paenibacillus polymyxa SC2]
 gi|309247872|gb|ADO57439.1| Adenine methyltransferase, putative [Paenibacillus polymyxa SC2]
          Length = 410

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 87/213 (40%), Gaps = 22/213 (10%)

Query: 42  LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
           L+  DPPYN+ +     R      D  +   +     E +  F  A       V++P   
Sbjct: 201 LVVTDPPYNVAVESVSER---LAADGRSSIMNDNMPAEDFAGFLYAVFSNYAVVMQPTAA 257

Query: 102 LWVI--GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA---S 156
           ++V    SYH  F     +   +  +    VW K+     F   +++  HE + +A    
Sbjct: 258 IYVFHPSSYHREFE--DAMNAASIVVRTQCVWVKN--AATFGWAQYRYKHEPVFYAHLKG 313

Query: 157 PSPKAKGYTFNYDALKAA--NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
            +P   G        KA    ED    + W        E  R    + +HPTQKP  LL+
Sbjct: 314 KAPAWYGDRTQTTVWKAGLPVEDPLPETVW--------EVSRGDVNKYVHPTQKPLDLLA 365

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
             + +S++ GD ++D F GSG++    +++ R+
Sbjct: 366 IPIRNSSQRGDEVVDFFGGSGSTLMTCEQMDRT 398


>gi|229125143|ref|ZP_04254294.1| hypothetical protein bcere0016_54070 [Bacillus cereus 95/8201]
 gi|228658310|gb|EEL13999.1| hypothetical protein bcere0016_54070 [Bacillus cereus 95/8201]
          Length = 181

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 79/186 (42%), Gaps = 21/186 (11%)

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           E++  F     +    V +P   ++V  +          L++  + +   I+W K++ + 
Sbjct: 4   ESFYEFLLTAYINMLEVSRPGAAIYVCHADSEGINFRKGLKDAGWLLKQCIIWAKNSFVI 63

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
                 +Q  HE ++          Y +   A    N D +  + W        + LRN 
Sbjct: 64  GRSDYHWQ--HEPIL----------YGWKPGAAHTWNSDRKQTTVWEF-----DKPLRNG 106

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +    HPT KP  + ++ + +S+  G+++ +PF GSG++   A++L R    +E    Y 
Sbjct: 107 E----HPTMKPVGIPAKGIQNSSFKGNLVFEPFGGSGSTLIAAEQLNRICYIMEYDPKYC 162

Query: 259 DIATKR 264
           D+  KR
Sbjct: 163 DVIIKR 168


>gi|322433745|ref|YP_004215957.1| DNA methylase N-4/N-6 domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321161472|gb|ADW67177.1| DNA methylase N-4/N-6 domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 935

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 46/85 (54%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +KL+  Q     + R ++ +T PGD++LDP  GSG++  VA++  R +I ++  +  + +
Sbjct: 431 DKLYVVQTGTKTIQRCILMTTDPGDLVLDPTCGSGSTAYVAEQWGRRWITVDTSRVALAL 490

Query: 261 ATKRIASVQPLGNIELTVLTGKRTE 285
           A  R+   +    +    + G+R +
Sbjct: 491 ARARVMGARYAYYLLTDSIEGRRKD 515



 Score = 40.0 bits (92), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 25/125 (20%)

Query: 19  WKDKIIKGNSISVLEKLPAKS-----VDLIFADPPYNLQLN-----------------GQ 56
           W +++I G+S+ V+  L  +      V  I+ DPPY ++ N                 G 
Sbjct: 143 WSNRMILGDSLQVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGNVGH 202

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
           + R +   V A  D+W       +Y ++ R  L+A R +L  +G+++V     N  R+  
Sbjct: 203 ITR-EPEQVKAFRDTWR--DGIHSYLSYLRDRLVAARDMLTDSGSIFVQIGDENSHRVRA 259

Query: 117 MLQNL 121
           +L  +
Sbjct: 260 LLDEV 264


>gi|83310259|ref|YP_420523.1| modification methylase DpnIIB [Magnetospirillum magneticum AMB-1]
 gi|82945100|dbj|BAE49964.1| Modification methylase DpnIIB [Magnetospirillum magneticum AMB-1]
          Length = 422

 Score = 44.3 bits (103), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 37/68 (54%)

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           ++D   +H TQKP   + R +++++  G+ + +PF GSGT+   A+   R    +E+   
Sbjct: 325 DEDEATVHGTQKPVECMRRPILNNSAEGEAVYEPFAGSGTTVIAAETTGRICFAMELNPA 384

Query: 257 YIDIATKR 264
           Y D+   R
Sbjct: 385 YADVIVGR 392


>gi|289579736|ref|YP_003478202.1| DNA methylase N-4/N-6 domain protein [Natrialba magadii ATCC 43099]
 gi|289529289|gb|ADD03640.1| DNA methylase N-4/N-6 domain protein [Natrialba magadii ATCC 43099]
          Length = 360

 Score = 44.3 bits (103), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 119/291 (40%), Gaps = 39/291 (13%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNL-QLNGQLYRP-DHSLVDAVTDSWDK 74
            E   ++  G+S   L  +   +V+L+   PPY + ++   L+   D ++ DA+ +S   
Sbjct: 1   METTHRVFVGDSRD-LAAVGDDTVELVVTSPPYPMIEMWDDLFTELDPAIGDAL-ESGAG 58

Query: 75  FSSFEAYDA-FTRAWLLACRRVLKPNG---------TLWVIGSYH---NIFRIGTMLQNL 121
             +FEA  A   R W     RVL   G         T  V GS+    N  R+    ++ 
Sbjct: 59  RRAFEAMHAQLDRVWD-EVERVLVDGGIACINVGDATRSVDGSFRVFSNHARVLEAFESR 117

Query: 122 NFWILNDIVWRK-SNPMPNFRGRRF--QNA-----HETLIWASPSPKAKGYTFNYDALKA 173
            F  L D++WRK +N    F G      NA     HE ++      +++ +    D    
Sbjct: 118 GFDPLPDVLWRKPTNSAAKFMGSGTLPPNAYVTLEHEYVLLFRNGGESRSFEPGADRRYE 177

Query: 174 ANEDVQMRSDWLIPICS-------------GSERLRNKDGEKLHPTQKPEALLSRILVSS 220
           A    + R++W   + +              +ER       +      P  +  R++   
Sbjct: 178 AAYFWEERNNWFSDVWTDVKGELQHLEQPDNTERSGQDTDLRDRSAAYPFEIPYRLITMY 237

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           +  GD +LDPF+G+GT+   A    R  IG E++  + D+  +R+  V  L
Sbjct: 238 SAYGDTVLDPFWGTGTTTLAAMCAGRHSIGQELETGFRDVFDERVERVPSL 288


>gi|218295753|ref|ZP_03496549.1| Site-specific DNA-methyltransferase (adenine-specific) [Thermus
           aquaticus Y51MC23]
 gi|218243912|gb|EED10439.1| Site-specific DNA-methyltransferase (adenine-specific) [Thermus
           aquaticus Y51MC23]
          Length = 530

 Score = 44.3 bits (103), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 38/74 (51%), Gaps = 9/74 (12%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKP--GDIILDPFFGSGTSGAVAKKL------RRSFIG 250
           +GE   PT KP  LL RIL  +T P  GDI+LD F GSGT+G    K        R FI 
Sbjct: 325 EGEDF-PTPKPTRLLQRILQIATNPHDGDIVLDSFAGSGTTGHAVLKQNAADGGNRRFIL 383

Query: 251 IEMKQDYIDIATKR 264
           +E+        T+R
Sbjct: 384 VELDPHIARSITRR 397


>gi|302343032|ref|YP_003807561.1| DNA methylase N-4/N-6 domain protein [Desulfarculus baarsii DSM
           2075]
 gi|301639645|gb|ADK84967.1| DNA methylase N-4/N-6 domain protein [Desulfarculus baarsii DSM
           2075]
          Length = 938

 Score = 44.3 bits (103), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 39/64 (60%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K++  Q    ++ R ++ +T PGD++LDP  GSGT+  VA++  R +I I+  +  + +A
Sbjct: 432 KVYVVQTNIKVIQRCILMATDPGDLVLDPTCGSGTTAYVAEQWGRRWITIDTSRVALALA 491

Query: 262 TKRI 265
             RI
Sbjct: 492 RARI 495



 Score = 40.8 bits (94), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 23/125 (18%)

Query: 18  EWKDKIIKGNSISVLEKLPAKS-----VDLIFADPPYNLQLNGQLY-----------RPD 61
           +W +++I G+S+ V+  L  +      V  I+ DPPY ++ N               + +
Sbjct: 130 KWSNRLILGDSLQVMASLAEREGLRGQVQCIYLDPPYGIKFNSNFQWSTTSRTVTDGKAE 189

Query: 62  H-----SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
           H       V A  D+W       +Y  + R  L A R +L  +G+++V     N+ R+  
Sbjct: 190 HITREPEQVKAFRDTWR--DGIHSYLTYLRDRLTAARDLLAESGSIFVQIGDQNVHRVRA 247

Query: 117 MLQNL 121
           ++  +
Sbjct: 248 LMDEV 252


>gi|14325741|dbj|BAB60644.1| DNA adenine modification methylase [Thermoplasma volcanium GSS1]
          Length = 703

 Score = 44.3 bits (103), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 37/62 (59%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           + T+K E LL  IL  S+    +I D F GSGT+GAVA+KL R +I  ++ +    I  K
Sbjct: 366 YQTEKNEDLLDLILEHSSSSNSVIADFFAGSGTTGAVAEKLGRKWIMCDLGKPACMITRK 425

Query: 264 RI 265
           R+
Sbjct: 426 RL 427


>gi|13542307|ref|NP_111995.1| adenine specific DNA methylase [Thermoplasma volcanium GSS1]
          Length = 681

 Score = 44.3 bits (103), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 37/62 (59%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           + T+K E LL  IL  S+    +I D F GSGT+GAVA+KL R +I  ++ +    I  K
Sbjct: 344 YQTEKNEDLLDLILEHSSSSNSVIADFFAGSGTTGAVAEKLGRKWIMCDLGKPACMITRK 403

Query: 264 RI 265
           R+
Sbjct: 404 RL 405


>gi|330892363|gb|EGH25024.1| site-specific DNA-methyltransferase (adenine-specific) [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 358

 Score = 44.3 bits (103), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 3/87 (3%)

Query: 199 DGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQD 256
           DGE    T KP  L+ R++ VS    GDI+LD F GSGT+GA      +S FI +++ ++
Sbjct: 118 DGEVPFDTVKPTELIKRMMKVSGVNEGDIVLDFFAGSGTTGAAVFDTEQSRFILVQLPEE 177

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKR 283
            ID +     + + LG  +++ +T +R
Sbjct: 178 -IDESKPHGITARKLGLSKISDVTKER 203


>gi|94311602|ref|YP_584812.1| DNA methylase N-4/N-6 [Cupriavidus metallidurans CH34]
 gi|93355454|gb|ABF09543.1| putative DNA methylase N-4/N-6 [Cupriavidus metallidurans CH34]
          Length = 388

 Score = 44.3 bits (103), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 76/184 (41%), Gaps = 38/184 (20%)

Query: 35  LPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
           +P  SVDLI   PPY    +   +GQ+                + S+  AY A     + 
Sbjct: 31  VPDASVDLIVTSPPYWKKRDYGFDGQI---------------GQESTPAAYVANMIECMR 75

Query: 91  ACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNL------NFWIL-NDIVWRKSNPMPNFRG 142
             RRVLKP+G++++ +G  +    +  +   L      + W++ N I+W K + MP    
Sbjct: 76  EWRRVLKPSGSIFLNVGDSYMARTLAGVPGRLEAAAIDDGWLVRNRIIWAKESGMPEPAK 135

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD-WLIPICSGSERLRNKDGE 201
            R  N HE +I    S K   Y ++      AN +     D W IP       LR   G+
Sbjct: 136 NRLANRHEYIIHFVSSAK---YFYDLAGYAEANGNGANPGDVWNIP-------LRRNMGD 185

Query: 202 KLHP 205
            L P
Sbjct: 186 HLAP 189


>gi|85720925|gb|ABC75875.1| M2.BtsI [Geobacillus thermoglucosidasius]
          Length = 393

 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
           T+PGD ILDP+ GSGT+   A  L R  IGI++    + IA    A V P+   +L  L 
Sbjct: 54  TQPGDTILDPYMGSGTTLVEAVLLNRFSIGIDLNPLAVLIAQ---AKVTPIEREKLDFLI 110

Query: 281 GKRTEPRVAFNLLVERGLIQP 301
              T+   + +L  E  +  P
Sbjct: 111 TTFTDLCESLDLYFEPSIFNP 131


>gi|300193|gb|AAB26533.1| StyLT1 restriction-modification system methylase subunit, StyLT1
           Mod [Salmonella typhimurium, Peptide, 651 aa]
          Length = 651

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 27/157 (17%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L    + +VD+I+ DPPYN   +G +Y 
Sbjct: 94  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYSDTVDMIYIDPPYNTGSDGFVY- 146

Query: 60  PDH------SLVD---------AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
           PDH      +L D         A   S    S+  A+ +F    L   R++LK  G +++
Sbjct: 147 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 206

Query: 105 IGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMPN 139
               +    +  M+  +      + +++W++   + N
Sbjct: 207 SIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISN 243


>gi|32455951|ref|NP_862409.1| putative DNA modification methyltransferase [Micrococcus sp. 28]
 gi|18025397|gb|AAK62505.1| putative DNA modification methyltransferase [Micrococcus sp. 28]
          Length = 398

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 12/94 (12%)

Query: 184 WLIPICSGSERL------------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
           W  P    SER+            R       H  QKP  L+ R++ ++T PGD++ +PF
Sbjct: 271 WNRPALHDSERMKGSLRRSAPRVYRPTKASTTHLNQKPLELMERLVHATTDPGDVVWEPF 330

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
            G  T    A    R     EM   + ++A +R+
Sbjct: 331 GGLATGSVAAVATGRDAYVAEMDPFFAELAGERL 364


>gi|323186687|gb|EFZ72012.1| hypothetical protein ECRN5871_5079 [Escherichia coli RN587/1]
          Length = 147

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 17/114 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  +  LP  SVDLI  DPPY                    + WD +++  E 
Sbjct: 11  ELINADCLEFMRSLPENSVDLIVTDPPY---------------FKVKPEGWDNQWAGDED 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
           Y  +    L    RVLKP G+L++    H +     ++    F +LN I+W K+
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDTEIMMRERFNVLNHIIWAKA 108


>gi|296531888|ref|ZP_06894691.1| DNA (cytosine-5-)-methyltransferase [Roseomonas cervicalis ATCC
           49957]
 gi|296267754|gb|EFH13576.1| DNA (cytosine-5-)-methyltransferase [Roseomonas cervicalis ATCC
           49957]
          Length = 488

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%)

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           R + +  E  HP   P AL   ++ + T   D++ +PF GSGT+    ++  R    IE+
Sbjct: 384 RHKGRGIETEHPAVFPVALPEFLMRAYTDECDVVFEPFGGSGTTILAGQRTGRRVRAIEL 443

Query: 254 KQDYIDIATKRIASVQP 270
              Y+D+A  R   + P
Sbjct: 444 APAYVDLAIARWRMLHP 460


>gi|218461660|ref|ZP_03501751.1| putative DNA methylase protein [Rhizobium etli Kim 5]
          Length = 213

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 34/63 (53%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           P AL+S +L   TKPGD + DPF G GT+  V ++  R   GIE  +   +   +RI + 
Sbjct: 29  PGALVSALLDRFTKPGDAVFDPFVGFGTTFFVCEQRGRLPYGIEADRQRYEWVRERITAK 88

Query: 269 QPL 271
             L
Sbjct: 89  HHL 91


>gi|331090171|ref|ZP_08339059.1| hypothetical protein HMPREF1025_02642 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330402117|gb|EGG81689.1| hypothetical protein HMPREF1025_02642 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 412

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 49/234 (20%), Positives = 93/234 (39%), Gaps = 50/234 (21%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99
            +L+  DPPYN+   G   +  +          D  +  + Y+ F  A       V+  +
Sbjct: 190 ANLVITDPPYNVNYEGSAGKIKN----------DNMAGEKFYE-FLLAAFKNMESVMAAD 238

Query: 100 GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNAHETLIWA-SP 157
            +++V  +            +  F++    +W+K + +    GR  +Q  HE +++    
Sbjct: 239 ASIYVFHADTEGLNFRRAFADAGFYLSGCCIWKKQSLV---LGRSPYQWQHEPVLYGWKK 295

Query: 158 SPKAKGYT-------FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
           + K + YT       + +D  K                         K+GE  HPT KP 
Sbjct: 296 NGKHQWYTGRKETTIWEFDKPK-------------------------KNGE--HPTMKPI 328

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            LL+  + +S+    ++LDPF GSG++    ++  R    IE+ + + D+   R
Sbjct: 329 PLLAYPIGNSSMANSVVLDPFGGSGSTLIACEQTDRICRTIELDEKFCDVIVNR 382


>gi|313652048|ref|YP_004046726.1| DNA methylase N-4/N-6 domain protein [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940799|gb|ADR19990.1| DNA methylase N-4/N-6 domain protein [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 288

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 50/234 (21%), Positives = 90/234 (38%), Gaps = 24/234 (10%)

Query: 41  DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG 100
           DLI   PPYN+ +    ++ +               S+E Y  F+ AWL  C +  K   
Sbjct: 62  DLIVTSPPYNVDIKYNTHKDN--------------ISYEEYLQFSEAWLSNCYKWSKKQA 107

Query: 101 TLWV-------IGSYHNIFRIGTML-QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL 152
            L +        G   ++    T+L Q + +   + I+W + N         + +A    
Sbjct: 108 RLCLNIPLDKNKGGQRSVGADLTILAQKVGWKYHSTIIWNEGNISRRTAWGSWLSASAPY 167

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEA 211
           + A        Y   +   +       +  D  +   +G      +  +++ HP   P  
Sbjct: 168 VIAPVELIVILYKEEWKKTQGTRIS-DISKDEFMQWTNGLWTFNGESKKRIGHPAPFPLE 226

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           L  R +   +   DI+ DPF GSGT+   A    R  IG+E+   Y +++ +R+
Sbjct: 227 LPYRCIKLFSFVQDIVFDPFAGSGTTLIAANNTNRYSIGLEIDSSYCELSKQRV 280


>gi|317153366|ref|YP_004121414.1| DNA methylase N-4/N-6 domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316943617|gb|ADU62668.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 934

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 9/138 (6%)

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIW-ASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
           L D  +RK    PN       N  +   + A P+P    +   ++ALK    D    S  
Sbjct: 44  LQDPEFRKIEGFPNGSDEDILNLSDPPYYTACPNPWIGHFIAEWEALKPKKPD--NYSYH 101

Query: 185 LIPICSGSERLRNKDGEKLHP--TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
             P  +     +     K HP  T+ P   + R ++  TKPGDI+ D F G+G +G  A+
Sbjct: 102 REPFAADVSEGKYDPIYKYHPYPTKVPHKAIMRYILHYTKPGDIVFDGFCGTGMTGVAAQ 161

Query: 243 KL--RRSFI--GIEMKQD 256
               R + I  G ++KQD
Sbjct: 162 MCGDRDAVISLGYQVKQD 179


>gi|296136461|ref|YP_003643703.1| Site-specific DNA-methyltransferase (adenine-specific) [Thiomonas
           intermedia K12]
 gi|295796583|gb|ADG31373.1| Site-specific DNA-methyltransferase (adenine-specific) [Thiomonas
           intermedia K12]
          Length = 1138

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 5/96 (5%)

Query: 177 DVQMRSDWLIPICSGSERLRNKDGE-KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
           D Q+    ++    G + L N  G     P  KP  L+ R +  +T+P D ++D F GSG
Sbjct: 855 DTQVSKSVVLDYTDGEKELTNLTGSPNSFPNPKPTTLIGRFIEQTTEPKDWVMDFFAGSG 914

Query: 236 TSGAVAKKLR--RSFIGIEMKQDYIDIATK-RIASV 268
           T G     L   R F+  EM   Y D  TK RIA +
Sbjct: 915 TCGHAVLALEQPRRFVLTEMG-GYWDTVTKPRIARL 949


>gi|329849606|ref|ZP_08264452.1| DNA methylase family protein [Asticcacaulis biprosthecum C19]
 gi|328841517|gb|EGF91087.1| DNA methylase family protein [Asticcacaulis biprosthecum C19]
          Length = 959

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 38/64 (59%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           +L+  Q    ++ R ++ +T PGD++LDP  GSGT+   A++  R +I I+  +  I +A
Sbjct: 420 RLYVVQTATKVVQRCILMTTDPGDLVLDPTCGSGTTAYAAEQWGRRWITIDTSRVAIALA 479

Query: 262 TKRI 265
             R+
Sbjct: 480 RSRL 483



 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 23/124 (18%)

Query: 19  WKDKIIKGNSISVLEKLPAKS-----VDLIFADPPYNLQLNGQLY-----------RPDH 62
           W +++I G+S+SV+  L  +      V  I+ DPPY ++ N                 DH
Sbjct: 131 WANRMISGDSLSVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGAKDH 190

Query: 63  -----SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
                  V A  D+W       +Y  + R  L+  R +L  +G+++V     N+ R+ ++
Sbjct: 191 ITREPEQVRAFRDTWK--DGIHSYLTYLRDRLVVARDLLHESGSIFVQIGDENVHRVRSL 248

Query: 118 LQNL 121
           +  +
Sbjct: 249 MDEV 252


>gi|222036042|emb|CAP78787.1| Type III restriction-modification system StyLTI enzyme mod (EC
           21172) [Escherichia coli LF82]
 gi|312948924|gb|ADR29751.1| hypothetical protein NRG857_21720 [Escherichia coli O83:H1 str. NRG
           857C]
 gi|324005145|gb|EGB74364.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 57-2]
          Length = 672

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 93/210 (44%), Gaps = 33/210 (15%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD-----H 62
           EN+NS    ++ +IKG+++ VL+ +    A+ V +I+ DPPYN   +G  Y  D      
Sbjct: 91  ENKNS----QNLLIKGDNLEVLKHMVNAYAEKVKMIYIDPPYNTGKDGFAYNDDRKFTPE 146

Query: 63  SLVDAVTDSWDKF-----------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
            L D      D+            SS  A+  F    L   R +L+ +G +++    + +
Sbjct: 147 QLSDLAGIDLDEAKRILEFTTNGSSSHSAWLTFIYPRLYIARELLREDGVIFISIDENEL 206

Query: 112 FRIGTMLQNL----NFWILNDIVWRKSNPMPNFRGRRFQNAHE-TLIWASPSPKAKGYTF 166
            ++ T+   +    NF  + +IVW K  P  N +G    N HE  L +A  +  +K +  
Sbjct: 207 NQLKTICDEIFGEANF--IENIVWNKRIP-KNDKG--IGNIHEYILAYAKNNEISKEFLM 261

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLR 196
             D +    + ++      +P+    ++L+
Sbjct: 262 RKDGIDDVYQFIEKLKKEKVPLDKAEQQLK 291


>gi|172035872|ref|YP_001802373.1| putative DNA-methyltransferase [Cyanothece sp. ATCC 51142]
 gi|171697326|gb|ACB50307.1| putative DNA-methyltransferase [Cyanothece sp. ATCC 51142]
          Length = 91

 Score = 43.9 bits (102), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 25/88 (28%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNL------QLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +G+ + ++    + S+DLIFADPP+NL      ++N QL   D               
Sbjct: 1   MYQGDCLDLMFHTASDSIDLIFADPPFNLSKIYPSKINDQLMDRD--------------- 45

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWV 104
               Y ++   WL  C R+LKP G+L++
Sbjct: 46  ----YLSWCETWLKDCIRILKPGGSLFL 69


>gi|86153960|ref|ZP_01072162.1| DNA adenine modification methylase [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|85842498|gb|EAQ59711.1| DNA adenine modification methylase [Campylobacter jejuni subsp.
           jejuni HB93-13]
          Length = 265

 Score = 43.9 bits (102), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
           D+   S WLI     S + RN       P Q P  L+ R     TK  D+I+DPF GSGT
Sbjct: 15  DINTDSLWLIASRDKSGKHRNIYHGNFIP-QIPNQLIRR----YTKKDDLIIDPFLGSGT 69

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIA 261
           +    +KL R  IG ++ +  ++  
Sbjct: 70  TLYECEKLNRKCIGFDINESILEFV 94


>gi|53805208|ref|YP_113069.1| DNA methyltransferase [Methylococcus capsulatus str. Bath]
 gi|53758969|gb|AAU93260.1| DNA methyltransferase [Methylococcus capsulatus str. Bath]
          Length = 1192

 Score = 43.9 bits (102), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 35/54 (64%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           ++ R L+ +T PGD++LDP  GSGT+  VA+K  R +I  +  +  + +A +R+
Sbjct: 370 VIERCLLMTTDPGDLVLDPTCGSGTTAFVAEKWGRRWITCDTSRVAVTLAKQRL 423



 Score = 39.7 bits (91), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 25/126 (19%)

Query: 18  EWKDKIIKGNSISVLEKLPAKS-----VDLIFADPPYNLQLNGQLYRP------------ 60
           +W +++I G+S+ V+  L  K      V +I+ DPPY ++  G  ++P            
Sbjct: 55  DWANRLIAGDSLLVMNSLIQKESMAGQVQMIYIDPPYGIKY-GSNFQPFVNKRDVKDRRD 113

Query: 61  -----DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
                +  ++ A  D+W+      +Y  + R  LL  R +L  +G+++V  S  N+  + 
Sbjct: 114 EDLTQEPEMIKAFRDTWEL--GIHSYLTYLRDRLLLARELLSESGSVFVQISDENLHHVR 171

Query: 116 TMLQNL 121
            ++  +
Sbjct: 172 EVMDEI 177


>gi|306817921|ref|ZP_07451659.1| type III restriction-modification system methylation subunit
           [Mobiluncus mulieris ATCC 35239]
 gi|304649264|gb|EFM46551.1| type III restriction-modification system methylation subunit
           [Mobiluncus mulieris ATCC 35239]
          Length = 475

 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T KP  LL+ +L +++ PGD++LD F GSG+ G  A    R FI +++ + +  +   R 
Sbjct: 387 TPKPVDLLAVLLEAASAPGDLVLDFFAGSGSFGVAAADGLRRFILVQLPEPFSPLHEAR- 445

Query: 266 ASVQPLGNIELTVLTGKR 283
              + LG   +  LT +R
Sbjct: 446 --ARDLGFDTIADLTAER 461


>gi|186681524|ref|YP_001864720.1| hypothetical protein Npun_F1051 [Nostoc punctiforme PCC 73102]
 gi|186463976|gb|ACC79777.1| conserved hypothetical protein [Nostoc punctiforme PCC 73102]
          Length = 498

 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           +KP   L+ ++ + TK GDI+LDPF GSG     A   +R FIGI++    I+++   I 
Sbjct: 41  KKPIEPLAFLIENLTKKGDIVLDPFLGSGLVAREAAIRQRRFIGIDINPIAIELSNLLIG 100

Query: 267 SVQP 270
              P
Sbjct: 101 LPSP 104


>gi|328545669|ref|YP_004305778.1| ParB domain protein nuclease [polymorphum gilvum SL003B-26A1]
 gi|326415409|gb|ADZ72472.1| ParB domain protein nuclease [Polymorphum gilvum SL003B-26A1]
          Length = 492

 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPT KP  + +  +   T PG+I  +PF GSG+     ++  R   G+E+ + + D+   
Sbjct: 396 HPTSKPVRVFTLPMELHTVPGEICYEPFSGSGSQIIAGERTGRRVYGLELSETFCDVIVN 455

Query: 264 R 264
           R
Sbjct: 456 R 456


>gi|28199526|ref|NP_779840.1| DNA modification methylase [Xylella fastidiosa Temecula1]
 gi|28057641|gb|AAO29489.1| DNA modification methylase [Xylella fastidiosa Temecula1]
 gi|307578535|gb|ADN62504.1| DNA modification methylase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 174

 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 86/198 (43%), Gaps = 36/198 (18%)

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI-GTMLQN-----LNFWILNDIVWR 132
           + Y  + R  L    R+L+ +G ++    Y++ +R+   +LQ+       F +   I+W+
Sbjct: 4   DEYVRWQRDCLTEMMRLLRNDGAIF----YNHKWRVQAGLLQDRTDIVTGFPVRQIIIWQ 59

Query: 133 KSNPMPNFRGRRFQNAHETL-IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
           ++  + NF    F   +E + + A P        F       A  DV     W IP    
Sbjct: 60  RNGGI-NFNSGYFLPTYEVIYLIAKPD-------FKLKPKANAIGDV-----WTIP---- 102

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
                 ++ +  HP   P  L  R + S     + +LDPF GSGT    A+ L   ++GI
Sbjct: 103 ------QESKNPHPAPFPVELAQRCIESVG--AEPVLDPFMGSGTIAVAAEILGYDWVGI 154

Query: 252 EMKQDYIDIATKRIASVQ 269
           E    Y++++  R+ S++
Sbjct: 155 EKSPKYVEMSLDRLKSLK 172


>gi|72536117|gb|AAZ73166.1| PstII restriction-modification enzyme Mod subunit [Providencia
           stuartii]
          Length = 561

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 16/81 (19%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA------KKLRRSFIGIEMKQDYID-- 259
           KP  L+S ++ + T   DIILD F GSGT+G         K   R FI IE+K++ +D  
Sbjct: 329 KPVNLISYLIEAFTGENDIILDSFAGSGTTGHAVLQLNKNKSTNRKFILIELKKETVDSV 388

Query: 260 --------IATKRIASVQPLG 272
                   I   + A+++P G
Sbjct: 389 IIPRLQAVIKGHKAAAIEPHG 409


>gi|307701299|ref|ZP_07638320.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
 gi|307613460|gb|EFN92708.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
          Length = 454

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T KP  LL+ +L +++ PGD++LD F GSG+ G  A    R FI +++ + +  +   R 
Sbjct: 366 TPKPVDLLAVLLEAASAPGDLVLDFFAGSGSFGVAAADGLRRFILVQLPEPFSPLHEAR- 424

Query: 266 ASVQPLGNIELTVLTGKR 283
              + LG   +  LT +R
Sbjct: 425 --ARDLGFDTIADLTAER 440


>gi|327400150|ref|YP_004340989.1| DNA methylase N-4/N-6 domain-containing protein [Archaeoglobus
           veneficus SNP6]
 gi|327315658|gb|AEA46274.1| DNA methylase N-4/N-6 domain protein [Archaeoglobus veneficus SNP6]
          Length = 316

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 40/70 (57%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           PE +  R++   +  GD +LDPF G+GT+  VA +L R+ IG E+ ++ + +   +I   
Sbjct: 233 PEEIPYRLIRMFSIIGDTVLDPFVGTGTTMKVAMQLNRNSIGYEIDKNLLPVIKDKIGVS 292

Query: 269 QPLGNIELTV 278
           Q   +++  V
Sbjct: 293 QSRLDMDFRV 302


>gi|326346321|gb|EGD70058.1| putative DNA methylase [Escherichia coli O157:H7 str. 1125]
          Length = 240

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 17/113 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  +  LP  SVDLI  DPPY                    + WD +++  E 
Sbjct: 11  ELINADCLEFMRSLPENSVDLIVTDPPY---------------FKVKPEGWDNQWAGDED 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           Y  +    L    RVLKP G+L++    H +     ++    F +LN I+W K
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDTEIMMRERFNVLNHIIWAK 107


>gi|302876781|ref|YP_003845414.1| DNA methylase N-4/N-6 domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307687462|ref|ZP_07629908.1| DNA methylase N-4/N-6 domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302579638|gb|ADL53650.1| DNA methylase N-4/N-6 domain protein [Clostridium cellulovorans
           743B]
          Length = 418

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 53/257 (20%), Positives = 103/257 (40%), Gaps = 52/257 (20%)

Query: 20  KDKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G++ S   V   +  K  +LI +DPPY +              D +T   D   
Sbjct: 168 RHRLMCGDATSEEDVATLMDGKKANLIVSDPPYGVSFQSS---------DGLTIQNDSIK 218

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E Y+   +A+       L+  G  ++  +           Q+  F +    +W K++ 
Sbjct: 219 GEEFYNFLLQAFKNMAAH-LEKGGAAYIFHADTEGLNFRRAFQDAGFHLAGCCIWVKNSL 277

Query: 137 MPNFRGRR-FQNAHETLIWA------SP--SPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
           +    GR  +Q  HE +++        P  S +++   +N+D  K               
Sbjct: 278 V---LGRSDYQWQHEPVLYGFLQNGKHPWYSDRSQTTIWNFDKPK--------------- 319

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                   RNK+    HPT KP  LL+  + +S++   I++D F GSG++    ++  R 
Sbjct: 320 --------RNKN----HPTSKPLDLLAYPIGNSSQANGIVVDTFGGSGSTLMACEQTNRI 367

Query: 248 FIGIEMKQDYIDIATKR 264
              +E+ + Y  +  +R
Sbjct: 368 CHTMELDEKYASVILRR 384


>gi|220915067|ref|YP_002490375.1| DNA methylase N-4/N-6 domain protein [Methylobacterium nodulans ORS
           2060]
 gi|219952818|gb|ACL63208.1| DNA methylase N-4/N-6 domain protein [Methylobacterium nodulans ORS
           2060]
          Length = 311

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 1/78 (1%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           R+ + EK H    P  L  R++   T P + +  PF G G+ G  +    R FIG E+KQ
Sbjct: 223 RDAEAEK-HLCPMPLDLTERLVRQYTNPDETVYSPFMGIGSEGYQSLLQGRRFIGTELKQ 281

Query: 256 DYIDIATKRIASVQPLGN 273
            Y   A + +   +  G 
Sbjct: 282 SYYTQAVRYLTEAEQRGT 299


>gi|167856572|ref|ZP_02479277.1| hypothetical protein HPS_06689 [Haemophilus parasuis 29755]
 gi|167852303|gb|EDS23612.1| hypothetical protein HPS_06689 [Haemophilus parasuis 29755]
          Length = 589

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 52/132 (39%), Gaps = 17/132 (12%)

Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWL-----------IPICSGSERLRNKDGEK 202
           W  P    +    N + +  A+E  Q RS +L           I    GS+    K+   
Sbjct: 321 WRYPLVTMEKMLKNNEIIFGADEVTQPRSKYLLKENLYENTPSILAFGGSDDKFQKEIGI 380

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQD 256
                KP    + +L S  KP  I+LD F GSGT+      L       R FIGIEM   
Sbjct: 381 HFENPKPNEFSTELLSSFLKPNSIVLDSFMGSGTTAHAVLNLNAKDGGNRQFIGIEMMDY 440

Query: 257 YIDIATKRIASV 268
             +I  +RI  V
Sbjct: 441 AENITAERIRRV 452


>gi|283778062|ref|YP_003368817.1| Site-specific DNA-methyltransferase (adenine- specific) [Pirellula
           staleyi DSM 6068]
 gi|283436515|gb|ADB14957.1| Site-specific DNA-methyltransferase (adenine- specific) [Pirellula
           staleyi DSM 6068]
          Length = 590

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 8/78 (10%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL-------RRSFIGI 251
           +G K+ P  K   +L+R++   T P DIILD F GSGT+     ++        R FI +
Sbjct: 374 EGRKVFPNPKDHEVLARLIRYVTGPNDIILDSFGGSGTTAHAVLQINRDTEGSERRFILV 433

Query: 252 EMKQDY-IDIATKRIASV 268
           EM  +  ++I  +RI  V
Sbjct: 434 EMLPEVAVEITAERIRRV 451


>gi|227874635|ref|ZP_03992798.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Mobiluncus mulieris ATCC 35243]
 gi|227844844|gb|EEJ54990.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Mobiluncus mulieris ATCC 35243]
          Length = 458

 Score = 43.5 bits (101), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T KP  LL+ +L +++ PGD++LD F GSG+ G  A    R FI +++ + +  +   R 
Sbjct: 370 TPKPVDLLAVLLEAASAPGDLVLDFFAGSGSFGVAAADGLRRFILVQLPEPFSPLHEAR- 428

Query: 266 ASVQPLGNIELTVLTGKR 283
              + LG   +  LT +R
Sbjct: 429 --ARDLGFDTIADLTAER 444


>gi|269977564|ref|ZP_06184531.1| DNA methylase [Mobiluncus mulieris 28-1]
 gi|269934167|gb|EEZ90734.1| DNA methylase [Mobiluncus mulieris 28-1]
          Length = 454

 Score = 43.5 bits (101), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T KP  LL+ +L +++ PGD++LD F GSG+ G  A    R FI +++ + +  +   R 
Sbjct: 366 TPKPVDLLAVLLEAASAPGDLVLDFFAGSGSFGVAAADGLRRFILVQLPEPFSPLHEAR- 424

Query: 266 ASVQPLGNIELTVLTGKR 283
              + LG   +  LT +R
Sbjct: 425 --ARDLGFDTIADLTAER 440


>gi|134297344|ref|YP_001121079.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134140501|gb|ABO56244.1| DNA methylase N-4/N-6 domain protein [Burkholderia vietnamiensis
           G4]
          Length = 447

 Score = 43.5 bits (101), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           R + K G+ + HP   P  L   ++ + T  G+++ +PF GSGT+   A++  R    +E
Sbjct: 337 RHKGKIGKDIDHPAVFPVTLPVEVIEAYTDEGEVVFEPFGGSGTTLMAAQRTGRIGRAVE 396

Query: 253 MKQDYIDIATKRI 265
           +  +Y+D+A  R 
Sbjct: 397 IAPEYVDVALLRF 409


>gi|227875052|ref|ZP_03993197.1| ParB family DNA methylase [Mobiluncus mulieris ATCC 35243]
 gi|306817339|ref|ZP_07451084.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris ATCC
           35239]
 gi|227844330|gb|EEJ54494.1| ParB family DNA methylase [Mobiluncus mulieris ATCC 35243]
 gi|304649780|gb|EFM47060.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris ATCC
           35239]
          Length = 411

 Score = 43.5 bits (101), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           RN D    HPT KP  LL+  + +ST+   I+LD F GSG++   A+   R    +E+ +
Sbjct: 313 RNAD----HPTSKPLDLLAYPIGNSTQANAIVLDTFAGSGSTLMAAEATDRICYCMELDE 368

Query: 256 DYIDIATKRIA 266
            Y  +  +R A
Sbjct: 369 KYASVILRRYA 379


>gi|121596365|ref|YP_988261.1| DNA methylase N-4/N-6 domain-containing protein [Acidovorax sp.
           JS42]
 gi|120608445|gb|ABM44185.1| DNA methylase N-4/N-6 domain protein [Acidovorax sp. JS42]
          Length = 1103

 Score = 43.5 bits (101), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 39/68 (57%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K +  Q     + R ++ +T PGD++LDP  GSGT+  VA+K  R +I  +  +  I +
Sbjct: 581 KKAYVVQTHPLAVERCMLMTTDPGDLVLDPTCGSGTTAYVAEKWGRRWITCDTSRVAITL 640

Query: 261 ATKRIASV 268
           A +R+ + 
Sbjct: 641 AKQRLMTA 648



 Score = 39.7 bits (91), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 41/192 (21%), Positives = 81/192 (42%), Gaps = 35/192 (18%)

Query: 19  WKDKIIKGNSISVLEKLPAKS-----VDLIFADPPYNLQLNGQLYRP------------- 60
           W ++++ G+S+ V+  L  K      V +I+ DPPY ++  G  ++P             
Sbjct: 289 WANRLVAGDSLLVMNSLLQKEGMAGQVQMIYIDPPYGIKY-GSNFQPFVGKRDVKDRADA 347

Query: 61  ----DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
               +  ++ A  D+W+      +Y  + R  LL  R +L  +G+++V  S  N+  +  
Sbjct: 348 DLTQEPEMIKAFRDTWEL--GIHSYLTYLRDRLLLARELLSDSGSVFVQISDENLHHVRE 405

Query: 117 MLQNL----NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
           ++  +    NF  L  I ++K+            + ++ L+W + +     Y   Y   K
Sbjct: 406 LMDEVFGSDNF--LGLIAYKKTTSAATL---GLASVYDMLVWYARNKTQTKYRQLY-LEK 459

Query: 173 AANEDVQMRSDW 184
            A ED   +  W
Sbjct: 460 IAGEDGGTQYTW 471


>gi|317501088|ref|ZP_07959294.1| DNA methylase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316897475|gb|EFV19540.1| DNA methylase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 421

 Score = 43.5 bits (101), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 102/273 (37%), Gaps = 64/273 (23%)

Query: 20  KDKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G++ S   V + +  K  +L+  DPPY +              D +T   D   
Sbjct: 168 RHRVMCGDATSPEDVEKLMNGKKANLVLTDPPYGVSFKAS---------DGLTIQNDSLK 218

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI-FR-----IGTMLQNLNFWILNDIV 130
             E Y     A+      + K             + FR      G  L  +  W+ N +V
Sbjct: 219 GEEFYKFLLAAFKNMADHLEKGGAAYCFHADTEGLTFRKAFIDAGFHLAGVCIWVKNSLV 278

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWA------SP--SPKAKGYTFNYDALKAANEDVQMRS 182
             +S+         +Q  HE +++        P  S + +   +NYD  K          
Sbjct: 279 LGRSD---------YQWQHEPVLYGFLQNGKHPWYSDRKQTTIWNYDKPK---------- 319

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
                        RNKD    HPT KP  LL   + +S++   +++D F GSG++    +
Sbjct: 320 -------------RNKD----HPTSKPLDLLGYPIQNSSQENSVVIDTFGGSGSTLMACE 362

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           +L R    +E+   Y  +  +R   V+  G+ E
Sbjct: 363 QLNRVCYMMELDPKYASVILRRY--VEDTGDDE 393


>gi|213692226|ref|YP_002322812.1| DNA methylase N-4/N-6 domain protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523687|gb|ACJ52434.1| DNA methylase N-4/N-6 domain protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320458352|dbj|BAJ68973.1| putative phage DNA methylase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 372

 Score = 43.5 bits (101), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 34/64 (53%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           LHPT KP  L+  ++   T P  ++L+PF GSG +    +      +  EM  DY+ +  
Sbjct: 301 LHPTVKPLELMRWLVRLVTPPDGLVLEPFAGSGATLEACRIEDVRCVAAEMDSDYVRLIA 360

Query: 263 KRIA 266
           +R+A
Sbjct: 361 RRMA 364


>gi|304390296|ref|ZP_07372249.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304326052|gb|EFL93297.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 416

 Score = 43.5 bits (101), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           RN D    HPT KP  LL+  + +ST+   I+LD F GSG++   A+   R    +E+ +
Sbjct: 318 RNAD----HPTSKPLDLLAYPIGNSTQANAIVLDTFAGSGSTLMAAEATDRICYCMELDE 373

Query: 256 DYIDIATKRIA 266
            Y  +  +R A
Sbjct: 374 KYASVILRRYA 384


>gi|300710254|ref|YP_003736068.1| modification methylase [Halalkalicoccus jeotgali B3]
 gi|299123937|gb|ADJ14276.1| modification methylase [Halalkalicoccus jeotgali B3]
          Length = 343

 Score = 43.5 bits (101), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 103/269 (38%), Gaps = 48/269 (17%)

Query: 35  LPAKSVDLIFADPPYNL---------------------QLNGQLYRPDHSLVDAVTDSWD 73
           LP +SVDL+   PPY +                         + +   H+++DAV   WD
Sbjct: 17  LPDESVDLVVTSPPYPMIEMWDDVFAGLDPGIEEMLAAGEGERAFESMHAILDAV---WD 73

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLW-VIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           +       +   R   +AC  V     T+     +Y N  RI    ++  F  L  I+WR
Sbjct: 74  EL------ERVLREGAIACINVGDATRTVENTFQTYPNHVRITEAFRDRGFVSLPGILWR 127

Query: 133 K-SNPMPNFRGRRF--QNAHET------LIWASPSPK--AKGYTFNYDALKAANEDVQMR 181
           K +N    F G      NA+ T      LI+    P+         Y++     E  +  
Sbjct: 128 KPTNSTAKFMGSGMVPTNAYPTLEHEHVLIFRKGGPRRFEPHLESRYESAYFWEERNRWF 187

Query: 182 SDWLIPICSGSERLRNKDGEK--LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
           SD    I    +RL  +  E+    P + P  L++   +      D + DPF+G+GT+  
Sbjct: 188 SDLWSDIKGVDQRLDGEARERSGAFPFELPYRLINMFSIHE----DTVCDPFWGTGTTTL 243

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            A    R  +G E+    ++    R+A +
Sbjct: 244 AAMVAGRESVGHELDPGLVEAFDGRLADL 272


>gi|84685896|ref|ZP_01013792.1| DNA methylase, putative [Maritimibacter alkaliphilus HTCC2654]
 gi|84665989|gb|EAQ12463.1| DNA methylase, putative [Rhodobacterales bacterium HTCC2654]
          Length = 1059

 Score = 43.5 bits (101), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 40/68 (58%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K +  +  E ++ R L+ +T PGD++LDP  G GT+  V++K  R +I  +  +  I +
Sbjct: 548 DKSYVVETSERVIERCLLMTTDPGDLVLDPTCGGGTTAFVSEKWGRRWITCDTSRVAITL 607

Query: 261 ATKRIASV 268
           A +R+ + 
Sbjct: 608 AKQRLMTA 615



 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 67/146 (45%), Gaps = 32/146 (21%)

Query: 19  WKDKIIKGNSISVLEKLPAKS-----VDLIFADPPYNLQLNGQLYRP------------- 60
           W ++++ G+S+ V+  L  K      V +I+ DPPY ++  G  ++P             
Sbjct: 257 WSNRLVAGDSLLVMNSLLTKESMGGKVQMIYIDPPYGIKY-GSNFQPFTNKKPNQTNDKE 315

Query: 61  -----DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
                +  ++ A  D+W+  +   +Y  + R  L+  R +L P G+++V  S  N+  + 
Sbjct: 316 EDLTAEPEMIRAFRDTWELGA--HSYLTYLRDRLVLSRELLDPTGSVFVQISDENLHSVR 373

Query: 116 TMLQNL----NFWILNDIVWRKSNPM 137
            ++  +    NF  +N I +R   P+
Sbjct: 374 ALMDEVFGAENF--MNIIAYRTKIPL 397


>gi|163846563|ref|YP_001634607.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222524354|ref|YP_002568825.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus sp.
           Y-400-fl]
 gi|163667852|gb|ABY34218.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222448233|gb|ACM52499.1| DNA methylase N-4/N-6 domain protein [Chloroflexus sp. Y-400-fl]
          Length = 368

 Score = 43.5 bits (101), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 5/79 (6%)

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
           +D+   S WLI    GS   R        P Q P   + R     T+PG+ +LDPF GSG
Sbjct: 122 DDILTDSLWLIERRDGSGVHRADYWGNFVP-QIPHQFIRRY----TRPGEWVLDPFAGSG 176

Query: 236 TSGAVAKKLRRSFIGIEMK 254
           T+   A++L R+ IG+E++
Sbjct: 177 TTLIEARRLGRNAIGVELQ 195


>gi|332829798|gb|EGK02440.1| hypothetical protein HMPREF9455_01397 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 473

 Score = 43.5 bits (101), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 117/280 (41%), Gaps = 50/280 (17%)

Query: 22  KIIKGNS--ISVLEKLPA-KSVDLIFADPPYNL---QLNGQLYRPDHSLVDAVTD-SWDK 74
           ++I G+S  ++V+ +L A +   ++F DPPYNL   Q +G       +    V + S ++
Sbjct: 175 RLICGDSTDVNVIGRLMAGQYAHMVFTDPPYNLAPEQFSGFGKNEAQTFAMGVGEMSEEQ 234

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           F+ F       + +L+  R  +K  G++ +V   + ++  I    +  + +  N IVW K
Sbjct: 235 FTEF-----LKKCFLVLIRHSVK--GSIHYVCMDWKHVLEIRAAGKVYSEY-KNMIVWNK 286

Query: 134 SNP-MPNFRGRR------FQN----------------------AHETLIWASPSPKAKGY 164
           +N  M +F   +      FQN                      AH  LI+   + + +  
Sbjct: 287 TNGGMGSFYRSKHELIFMFQNNQDLPEEILDARITDIEQTGYEAHHELIFVFKNGRER-- 344

Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
             N +            + W  P  S   +  +    K HPT KP  L++  ++  +  G
Sbjct: 345 --NVNNFMLGQTGRYRTNVWDYPGASSFNKTADV-STKDHPTPKPVKLVADAIMDCSLIG 401

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            IILD F GSGT+   A +  R     ++   Y D+  +R
Sbjct: 402 HIILDIFSGSGTTIIAADQTERVAYVADLGPGYCDLNVRR 441


>gi|284048552|ref|YP_003398891.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Acidaminococcus fermentans DSM 20731]
 gi|283952773|gb|ADB47576.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Acidaminococcus fermentans DSM 20731]
          Length = 640

 Score = 43.1 bits (100), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA------VAKKLRRSFIGIEM 253
           G+K+  T KP  LL RI+  +T    I+LD F GSGT+        +     R FI +EM
Sbjct: 376 GKKVFDTPKPTRLLKRIIQIATNKDSIVLDAFAGSGTTAHSVLETNLEDNGNRKFILVEM 435

Query: 254 KQDYIDIATKRIASV 268
                DI  +R+  V
Sbjct: 436 MDYANDITAQRVKKV 450


>gi|331090073|ref|ZP_08338962.1| DNA methylase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330402535|gb|EGG82104.1| DNA methylase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 233

 Score = 43.1 bits (100), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 53/250 (21%), Positives = 89/250 (35%), Gaps = 45/250 (18%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLY---RPDHSLVDA----VTDSWDKFSSFE 79
           N +  + + P K  D+   DPPY    N + Y       +L+      + D+WD     E
Sbjct: 10  NCMDGMREFPDKFFDIAVVDPPYFAGPNKRRYYGRSESTTLIKCREYDIIDTWD-VPGME 68

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            +D   R         +  +  +W    +   F  G             IVW K      
Sbjct: 69  YFDELIR---------VSRHQIVWGCNYFDYHFGSGR------------IVWDKCRSNMT 107

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           F       +   + + S     K + + +D +        +   W   I  G+++     
Sbjct: 108 F-------SDAEIAYCSLHDTVKTFRYMWDGMMQGK---SVDEGW---IQKGNKKTNE-- 152

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
             ++HPTQKP  L   I     KPG  +LD   GS +S     +    ++G E+ +    
Sbjct: 153 -HRIHPTQKPIDLYRWIAREYIKPGWNVLDTHTGSASSLIAYHEAGIRYVGFEINEKMYQ 211

Query: 260 IATKRIASVQ 269
            A KR+  V+
Sbjct: 212 KARKRLKEVE 221


>gi|332884375|gb|EGK04641.1| hypothetical protein HMPREF9456_03410 [Dysgonomonas mossii DSM
           22836]
          Length = 266

 Score = 43.1 bits (100), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 6/89 (6%)

Query: 203 LHPTQKPEALLSRIL-----VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           +HPTQKP  L+ R+L     +   KP  ++LD F GS ++           I  E+  +Y
Sbjct: 135 IHPTQKPPRLIERLLALVCKIEPNKPKPLVLDTFRGSASTDIACMNFGVDCISFEIDDEY 194

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEP 286
            D   +R  S   L  + L  +  K   P
Sbjct: 195 FDEGEER-KSEHNLEQVPLMFINNKLYRP 222


>gi|255020318|ref|ZP_05292386.1| ParB domain protein nuclease [Acidithiobacillus caldus ATCC 51756]
 gi|254970238|gb|EET27732.1| ParB domain protein nuclease [Acidithiobacillus caldus ATCC 51756]
          Length = 510

 Score = 43.1 bits (100), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 35/68 (51%)

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           +K+ E  HP   P  L   ++ + T  GD++ +PF GSGT+    +   R     E+  +
Sbjct: 377 DKEREIDHPAVFPIGLPQFVMEAYTNEGDVVFEPFSGSGTTILAGEACGRRVRASELAPE 436

Query: 257 YIDIATKR 264
           Y+D+A  R
Sbjct: 437 YVDVAVIR 444


>gi|237756542|ref|ZP_04585068.1| DNA methylase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691301|gb|EEP60383.1| DNA methylase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 241

 Score = 43.1 bits (100), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 35/69 (50%)

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           N + ++ H   + E     I      PG  ILDPF G GT+  V+ K   SFIGI++ ++
Sbjct: 162 NNNDKRFHKWGQSEEGFDIIFEKFVFPGQTILDPFVGGGTTAVVSLKRGCSFIGIDVDEN 221

Query: 257 YIDIATKRI 265
            I    +R+
Sbjct: 222 CIKKTEERV 230


>gi|307354431|ref|YP_003895482.1| DNA methylase N-4/N-6 domain-containing protein [Methanoplanus
           petrolearius DSM 11571]
 gi|307157664|gb|ADN37044.1| DNA methylase N-4/N-6 domain protein [Methanoplanus petrolearius
           DSM 11571]
          Length = 419

 Score = 43.1 bits (100), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 74/204 (36%), Gaps = 71/204 (34%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKF 75
           K  +I  + I  L+KLP +SV  +   PPY    +  + GQ+   +              
Sbjct: 2   KHTLINADVIKGLQKLPVQSVHTVVTSPPYWSLRDYGIEGQIGLEE-------------- 47

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF----------------------- 112
            + EA+           RRVL+ +GTLW+  +Y + +                       
Sbjct: 48  -TPEAHIQKIVEVFREVRRVLRDDGTLWL--NYGDCYTSGNKTGHGSKIGWKQQTNRGSD 104

Query: 113 ------------------------RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
                                   RI   LQ   +++  DIVW K NPMP     R   +
Sbjct: 105 GLRDAPRLPMPAGLKNKDLVGMPWRIALALQEDGWYLRCDIVWNKPNPMPESVNDRPTRS 164

Query: 149 HETLIWASPSPKAKGYTFNYDALK 172
           HE +   + SP+   Y ++ +A++
Sbjct: 165 HEYIFLMTKSPQ---YFYDAEAIR 185



 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 2/56 (3%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL--GNIELTVLT 280
           +LDPF GSGT   +A++  RS I IE+   Y+++  +R+ + + L  G  ++ ++T
Sbjct: 364 VLDPFGGSGTVADIAREQNRSSILIEINPSYVEMQKQRLRADEQLDTGICQIEIIT 419


>gi|302866307|ref|YP_003834944.1| DNA methylase N-4/N-6 domain-containing protein [Micromonospora
           aurantiaca ATCC 27029]
 gi|302569166|gb|ADL45368.1| DNA methylase N-4/N-6 domain protein [Micromonospora aurantiaca
           ATCC 27029]
          Length = 332

 Score = 43.1 bits (100), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +   A+ +  + + T+PGD++LDP  G GT+   A    R  IG+E +  + DIA  
Sbjct: 66  HPARMLPAIAAHAVTAYTQPGDLVLDPMCGIGTTLVEAIHSGRDAIGVEYESRWSDIADA 125

Query: 264 RI 265
            I
Sbjct: 126 NI 127


>gi|124485590|ref|YP_001030206.1| hypothetical protein Mlab_0768 [Methanocorpusculum labreanum Z]
 gi|124363131|gb|ABN06939.1| DNA methylase N-4/N-6 domain protein [Methanocorpusculum labreanum
           Z]
          Length = 262

 Score = 43.1 bits (100), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 104/269 (38%), Gaps = 49/269 (18%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           + +  +  L    VD+I   PPYN+   G+ Y            ++D       Y  + R
Sbjct: 2   DCVEGMSTLTPGMVDVIVTSPPYNI---GKAYT-----------TYDDTIPRNTYLKWMR 47

Query: 87  AWLLACRRVLKPNGTLW--VIGSYHNIF---RIGTMLQNLNFWILNDIVWRKSNPMPN-- 139
                  RVL  +G+ +  + GS  + +    +    +   F + N I W KS  +P+  
Sbjct: 48  TVAEESYRVLSDHGSFYLNIGGSLKDPWIPIDVAQAFREQGFVLQNMIHWIKSIALPDEG 107

Query: 140 --------FRGRRFQN-AHETLIWASPSPK------AKGYTF----NYDALKAANEDVQM 180
                      +R+ N  HE +   + +        A G  +    N +       D++ 
Sbjct: 108 VAAGHYKPINSKRYHNDCHEFIFHFTKNGTVQIDRLATGVPYQDKSNVNRWGGEKRDLRD 167

Query: 181 RSD-WLIPICSGSERLRNKDGEKLHPTQKPEAL-LSRILVSSTKPGDIILDPFFGSGTSG 238
           R + W IP     E +R     + HP   P  L +  I         +++DPF G G + 
Sbjct: 168 RGNTWFIPY----ETIRES---RPHPATFPIQLPVMCIKDHGLDKCRLVMDPFMGIGNTA 220

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
             A +L   FIG E+ + Y  +A +R+++
Sbjct: 221 IAAIRLGVPFIGFEIDEGYRKVANERVSA 249


>gi|294339785|emb|CAZ88147.1| putative N6 adenine-specific DNA methyltransferase [Thiomonas sp.
           3As]
          Length = 923

 Score = 43.1 bits (100), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 39/65 (60%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +KL+  Q    ++ R ++  T PGD++LDP  GSGT+  VA++  R +I  +  +  + +
Sbjct: 467 DKLYVVQTLPLVIQRCMLMCTDPGDLVLDPTCGSGTTAYVAEQWGRRWITCDTSRVPLAL 526

Query: 261 ATKRI 265
           A +R+
Sbjct: 527 ARQRL 531



 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 27/125 (21%), Positives = 56/125 (44%), Gaps = 25/125 (20%)

Query: 19  WKDKIIKGNSISVLEKL-----PAKSVDLIFADPPYNLQLNGQLYRP------------- 60
           W++++I G+S+ V+  L         V +++ DPPY ++  G  ++P             
Sbjct: 173 WQNRMILGDSLQVMNSLLEFEGLGGQVQMVYMDPPYGVKF-GSNFQPFVRKRDVTHGGDS 231

Query: 61  ----DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
               +  +V A  D+W+      +Y  + R  L   + +L  +G+++V  S  NI  +  
Sbjct: 232 DMTREPEMVKAYRDTWEL--GLHSYLTYLRDRLTLAKELLHESGSVFVQISEENIHHVRE 289

Query: 117 MLQNL 121
           +L  +
Sbjct: 290 LLDEV 294


>gi|197286959|ref|YP_002152831.1| DNA modification methyltransferase [Proteus mirabilis HI4320]
 gi|194684446|emb|CAR46179.1| DNA modification methyltransferase [Proteus mirabilis HI4320]
          Length = 511

 Score = 43.1 bits (100), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 203 LHP--TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           +HP   +KP  +   ++   + PGD+++DPF GSGTS   A KL R  IG ++
Sbjct: 25  IHPYWARKPINITELLVEKLSNPGDLVVDPFMGSGTSLIAALKLNRRTIGSDL 77


>gi|157149549|ref|YP_001451567.1| putative DNA methylase [Escherichia coli E24377A]
 gi|157076716|gb|ABV16425.1| putative DNA methylase [Escherichia coli E24377A]
          Length = 261

 Score = 43.1 bits (100), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 16/130 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPY---LVGFRDRQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNF 140
                       RVLK +  +     ++ + R  +  +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAHE 150
            G R + A++
Sbjct: 108 VGYRHECAYK 117


>gi|217032844|ref|ZP_03438323.1| hypothetical protein HPB128_165g3 [Helicobacter pylori B128]
 gi|298737009|ref|YP_003729539.1| DNA methyltransferase [Helicobacter pylori B8]
 gi|216945427|gb|EEC24091.1| hypothetical protein HPB128_165g3 [Helicobacter pylori B128]
 gi|298356203|emb|CBI67075.1| DNA methyltransferase [Helicobacter pylori B8]
          Length = 141

 Score = 43.1 bits (100), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 31/49 (63%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           +PT+K   LL  I+ +S+    I+LD F GSGT+   A  L+R FIGI+
Sbjct: 61  YPTEKNAQLLDLIIKTSSNKDSIVLDCFCGSGTTLKSAFLLQRKFIGID 109


>gi|256617065|ref|ZP_05473911.1| predicted protein [Enterococcus faecalis ATCC 4200]
 gi|257088372|ref|ZP_05582733.1| predicted protein [Enterococcus faecalis D6]
 gi|256596592|gb|EEU15768.1| predicted protein [Enterococcus faecalis ATCC 4200]
 gi|256996402|gb|EEU83704.1| predicted protein [Enterococcus faecalis D6]
          Length = 795

 Score = 43.1 bits (100), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 29/47 (61%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           +K   LL R++++ T    IILDPF GSG +   ++  +R F GIE+
Sbjct: 38  RKSPELLERVILALTGSDSIILDPFLGSGMTLIASQNAQRKFFGIEL 84


>gi|120436806|ref|YP_862492.1| phage DNA modification methylase [Gramella forsetii KT0803]
 gi|117578956|emb|CAL67425.1| phage DNA modification methylase [Gramella forsetii KT0803]
          Length = 260

 Score = 43.1 bits (100), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 30/65 (46%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K+HPTQKP  L   +L+    PGD I+D   GSG+       L       E  + Y   
Sbjct: 184 KKIHPTQKPVKLYEYLLMKFGNPGDKIIDTHLGSGSHSIACHNLGFHLDACEKDEQYYKD 243

Query: 261 ATKRI 265
           +  R+
Sbjct: 244 SLNRL 248


>gi|296531909|ref|ZP_06894712.1| DNA methylase N-4/N-6 [Roseomonas cervicalis ATCC 49957]
 gi|296267775|gb|EFH13597.1| DNA methylase N-4/N-6 [Roseomonas cervicalis ATCC 49957]
          Length = 599

 Score = 42.7 bits (99), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 39/65 (60%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K++  Q    ++ R ++ +T PGD++LDP  GSGT+  VA++  R +I  +  +  + +
Sbjct: 84  DKVYVVQTATKIIQRCMLMTTDPGDLVLDPTCGSGTTAFVAEQWGRRWITTDTSRVALAL 143

Query: 261 ATKRI 265
           A  R+
Sbjct: 144 ARTRL 148


>gi|161525446|ref|YP_001580458.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           multivorans ATCC 17616]
 gi|160342875|gb|ABX15961.1| DNA methylase N-4/N-6 domain protein [Burkholderia multivorans ATCC
           17616]
          Length = 403

 Score = 42.7 bits (99), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           R R + G+ + HP   P  L    + + +   +I+ +PF GSGT+    +   R    IE
Sbjct: 297 RQRGRIGDGIDHPAVFPLGLPKFFIEAYSDEAEIVFEPFSGSGTTLLAGQLTGRKVRAIE 356

Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLTGK 282
           +  +Y+D+A +R     P G   +  +TG+
Sbjct: 357 LAPEYVDVALRRWLQHHP-GTAPVLAVTGQ 385


>gi|109946647|ref|YP_663875.1| type III restriction-modification system methylation subunit
           fragment 1 [Helicobacter acinonychis str. Sheeba]
 gi|109713868|emb|CAJ98876.1| type III restriction-modification system methylation subunit
           fragment 1 [Helicobacter acinonychis str. Sheeba]
          Length = 463

 Score = 42.7 bits (99), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 191 GSERLRNK-DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           G+  +RN  +GEK+    KP  L++R++  ST  GDIILD F GSGT+     +  +S
Sbjct: 392 GANEVRNIFNGEKIFSYPKPLKLINRLIELSTNEGDIILDFFAGSGTTAHAVLESNKS 449


>gi|110005015|emb|CAK99346.1| hypothetical n-6 adenine specific dna methyltransferase c-terminal
           truncated protein [Spiroplasma citri]
          Length = 162

 Score = 42.7 bits (99), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 29/166 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY--------NLQLN-GQLYRPDHSLVDAVTDSW 72
           K+I G+++  ++ L   SVDLI  DPPY        N Q+N  ++ +  +  ++A+ D+ 
Sbjct: 8   KLINGDALEFIKTLENDSVDLILTDPPYLYNLSKRENEQINENRISKSINKYINALYDN- 66

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTL-W-----VIGSYHNIFRIGTMLQNLNFWIL 126
           +  +SF     +   +L    R+ K    L W     +I  Y +  R   ML +      
Sbjct: 67  NLHNSF-----YINTYLDEFYRISKTKFMLIWMNRQQIIIDYLDWVRKKDMLYDF----- 116

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
             I+W K+NPMP      +Q+    +I  S   +   Y  +Y++ K
Sbjct: 117 --ILWNKTNPMPT-NNHIYQDKEYCMIIYSKKHRIPNYKNDYESKK 159


>gi|323970431|gb|EGB65693.1| DNA methylase [Escherichia coli TA007]
          Length = 551

 Score = 42.7 bits (99), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 95/210 (45%), Gaps = 33/210 (15%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLV-D 66
           EN+NS    ++ +IKG+++ VL+ +    ++ V +I+ DPPYN   +G  Y  D     +
Sbjct: 97  ENKNS----QNLLIKGDNLEVLKHMVNAYSEKVKMIYIDPPYNTGKDGFAYNDDRKFTPE 152

Query: 67  AVTD---------------SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
            ++D               + +  SS  A+  F    L   R +L+ +G +++    + +
Sbjct: 153 QLSDLAGIDLDEAKRILEFTTNGSSSHSAWLTFIYPRLYIARELLREDGVIFISIDENEL 212

Query: 112 FRIGTMLQNL----NFWILNDIVWRKSNPMPNFRGRRFQNAHE-TLIWASPSPKAKGYTF 166
            ++ T+   +    NF  + +IVW K  P  N +G    N HE  L +A  +  +K +  
Sbjct: 213 NQLKTICDEIFGEANF--IENIVWNKRIP-KNDKG--IGNIHEYILAYAKNNEISKEFLM 267

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLR 196
             D +    + ++      +P+    ++L+
Sbjct: 268 RKDGIDDVYQFIEKLKKEKVPLDKAEQQLK 297


>gi|304317320|ref|YP_003852465.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778822|gb|ADL69381.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 266

 Score = 42.7 bits (99), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           I++  +K  DI+LDP  GSGT+   AK L R  IG ++  D IDI TKR
Sbjct: 41  IILRYSKENDIVLDPMVGSGTTLVEAKLLNRRGIGFDINPDAIDI-TKR 88


>gi|308271376|emb|CBX27984.1| hypothetical protein N47_G33080 [uncultured Desulfobacterium sp.]
          Length = 1093

 Score = 42.7 bits (99), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 39/65 (60%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K +  +    ++ R ++ +T PGD++LDP  GSGT+  VA++  R +I I+  +  + +
Sbjct: 429 KKRYVVETSTKVIERCIIMTTDPGDLVLDPTCGSGTTVYVAEQWGRRWITIDTSRVALAL 488

Query: 261 ATKRI 265
           A  RI
Sbjct: 489 ARARI 493



 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 23/124 (18%)

Query: 19  WKDKIIKGNSISVLEKLPAKS-----VDLIFADPPYNLQLNGQLY-----------RPDH 62
           W +++I G+S+ V+  L  +      V  I+ DPPY ++ N                 DH
Sbjct: 132 WSNRMILGDSLQVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGNVDH 191

Query: 63  -----SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
                  V A  D+W       +Y  + R  L   R +L  +G+++V     N+ R+  +
Sbjct: 192 ITREPEQVKAFRDTWR--DGIHSYLTYLRDRLTVARDLLTESGSIFVQIGDENVHRVRAL 249

Query: 118 LQNL 121
           +  +
Sbjct: 250 MDEV 253


>gi|153873450|ref|ZP_02002029.1| DNA methylase N-4/N-6 [Beggiatoa sp. PS]
 gi|152070084|gb|EDN67971.1| DNA methylase N-4/N-6 [Beggiatoa sp. PS]
          Length = 686

 Score = 42.7 bits (99), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 36/58 (62%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           ++ R L+ +T PGD++LDP  GSGT+  VA++  R +I  +  +  + +A  R+ + +
Sbjct: 207 VIQRCLLMTTDPGDLVLDPTCGSGTTAYVAEQWGRRWITCDTSRVALSLARTRLMTAK 264


>gi|159897657|ref|YP_001543904.1| DNA methylase N-4/N-6 domain-containing protein [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890696|gb|ABX03776.1| DNA methylase N-4/N-6 domain protein [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 251

 Score = 42.7 bits (99), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 28/42 (66%)

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
           +ER++   G+ +H  QKP  L+ RI+ +S+ P D+I +PF G
Sbjct: 204 AERIKTPQGKVIHLNQKPLDLMERIIAASSDPDDVIWEPFGG 245


>gi|208435386|ref|YP_002267052.1| type III R-M system modification enzyme [Helicobacter pylori G27]
 gi|208433315|gb|ACI28186.1| type III R-M system modification enzyme [Helicobacter pylori G27]
          Length = 461

 Score = 42.7 bits (99), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 191 GSERLRNK-DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           G+  +RN  +GEK+    KP  L++R++  ST  GDIILD F GSGT+     +  +S
Sbjct: 392 GANEVRNIFNGEKIFSYPKPLKLINRLIELSTNEGDIILDFFAGSGTTAHAVLESNKS 449


>gi|158318454|ref|YP_001510962.1| putative RNA methylase [Frankia sp. EAN1pec]
 gi|158113859|gb|ABW16056.1| putative RNA methylase [Frankia sp. EAN1pec]
          Length = 292

 Score = 42.7 bits (99), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 4/88 (4%)

Query: 193 ERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           +RL     E L HP +   AL   I+ + T+PGD+++DP  G GT+   A  L R  +G+
Sbjct: 23  QRLNRYTPESLAHPARMLPALARHIITTFTEPGDLVVDPMCGIGTTLVEAAHLGRRALGV 82

Query: 252 EMKQDYIDI--ATKRIASVQ-PLGNIEL 276
           E +  +  I  A   +A  Q   G I+L
Sbjct: 83  EYEPRWAGIGRANAALAHTQGATGTIQL 110


>gi|319760132|ref|YP_004124071.1| DNA methylase N-4/N-6 domain protein [Alicycliphilus denitrificans
           BC]
 gi|317119738|gb|ADV02226.1| DNA methylase N-4/N-6 domain protein [Alicycliphilus denitrificans
           BC]
          Length = 642

 Score = 42.7 bits (99), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 63/143 (44%), Gaps = 26/143 (18%)

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
           L NL+FWI   I            GR  +  H    W    P+++        +   NED
Sbjct: 351 LPNLDFWIGKPIA----------PGRPSRKEH----WTD-KPESERLAPLSSWIAGVNED 395

Query: 178 VQMRSDWLIPICS-----GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
           V    D L+ + S      ++ ++   G K     KP +L+  +L  +++P DI+LD F 
Sbjct: 396 VGEDDDDLMMLRSPRGGIATDEVKQILGSKAFQHPKPVSLIKGLLEQASRPDDIVLDFFA 455

Query: 233 GSGTSGAVAKKL------RRSFI 249
           GSGT+G V  +L      +R FI
Sbjct: 456 GSGTTGQVVLELNAQDRGKRRFI 478


>gi|1498743|gb|AAC44855.1| aatII methylase [Acetobacter aceti]
          Length = 331

 Score = 42.7 bits (99), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 204 HPTQKPEALLSRILVSSTKPG-DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           HP+ KP+  L +++ ++   G  II DPF GSG++ A A+ +    IG +    Y  I T
Sbjct: 259 HPSLKPQRFLRQVVRAALPLGIGIIYDPFAGSGSTLAAAEAVGYRAIGTDRDAQYFGIGT 318

Query: 263 KRIASVQPL 271
           K  +S+  L
Sbjct: 319 KAFSSLSTL 327


>gi|225155635|ref|ZP_03724124.1| DNA methylase N-4/N-6 domain protein [Opitutaceae bacterium TAV2]
 gi|224803608|gb|EEG21842.1| DNA methylase N-4/N-6 domain protein [Opitutaceae bacterium TAV2]
          Length = 315

 Score = 42.7 bits (99), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           +  G +  R  D E+ H       ++ R +   T PG+++LDPF G G++  V+ +  R 
Sbjct: 215 VLDGWKSARETDEER-HVCPLQLEVIRRCVKLYTNPGELVLDPFMGIGSTAYVSVEQGRR 273

Query: 248 FIGIEMKQDYIDIATKRI 265
            +G E+K+ Y +++ + +
Sbjct: 274 AVGFELKESYHNLSIRNL 291


>gi|265753968|ref|ZP_06089323.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Bacteroides
           sp. 3_1_33FAA]
 gi|263235682|gb|EEZ21206.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Bacteroides
           sp. 3_1_33FAA]
          Length = 158

 Score = 42.7 bits (99), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 34/67 (50%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+ +H  QKP ALL  ++ + TK GD +LD   GS ++        R  I IE  + Y 
Sbjct: 85  EGKTIHVNQKPIALLEYLIKTYTKEGDTVLDFASGSMSTAIACIYTNRKCICIEKDETYF 144

Query: 259 DIATKRI 265
               KR+
Sbjct: 145 SQGEKRV 151


>gi|240147216|ref|ZP_04745817.1| DNA (cytosine-5-)-methyltransferase [Roseburia intestinalis L1-82]
 gi|257200622|gb|EEU98906.1| DNA (cytosine-5-)-methyltransferase [Roseburia intestinalis L1-82]
          Length = 251

 Score = 42.7 bits (99), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 68/163 (41%), Gaps = 40/163 (24%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPD--HSLVDAVTDSWDK 74
           D II  +++  L +LP++SV+     PPY    +  L+ Q+ + D     +D + + + +
Sbjct: 4   DVIINRDALYALRELPSESVNCCVTSPPYYGLRDYGLDAQIGQEDTPEQYIDRLVEVFRE 63

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLW--VIGSYHNI-FRIGTMLQNL---------- 121
                             RRVLK +GT W  +  +Y     + G   ++L          
Sbjct: 64  L-----------------RRVLKDDGTFWLNIADTYCGTGMKAGCKQKDLIGIPWLLAFA 106

Query: 122 ----NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
                +++ +DI+W K NPMP     R    +E +   + S K
Sbjct: 107 LRSDGWYLRSDIIWLKENPMPESCRDRPSRCYEHIFLLTKSKK 149


>gi|17225519|gb|AAL37449.1|AF328915_3 type II DNA modification enzyme [Helicobacter pylori]
          Length = 343

 Score = 42.7 bits (99), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 31/49 (63%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           +PT+K   LL  I+ +S+    I+LD F GSGT+   A  L+R FIGI+
Sbjct: 263 YPTEKNAQLLDLIIKTSSNKNSIVLDCFCGSGTTLKSAFLLQRKFIGID 311


>gi|222529643|ref|YP_002573525.1| adenine-specific DNA methylase [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456490|gb|ACM60752.1| adenine-specific DNA methylase [Caldicellulosiruptor bescii DSM
           6725]
          Length = 416

 Score = 42.7 bits (99), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 4/76 (5%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +P   P  L   ++ S TK  DI+LDPF GSGT    A K  R+ IG+++    I I+  
Sbjct: 32  YPAMMPAPLAEFLIQSFTKKNDIVLDPFCGSGTVLYEALKNGRNAIGVDINPLAILISNV 91

Query: 264 RIASVQPLGNIELTVL 279
           +I     +G IEL+ L
Sbjct: 92  KIN----IGKIELSKL 103


>gi|323181044|gb|EFZ66580.1| DNA modification methylase-like protein [Escherichia coli 1180]
          Length = 123

 Score = 42.7 bits (99), Expect = 0.098,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 17/117 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY   L G   R   ++   V D W + +S E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPY---LVGFRDRSGRTIAGDVNDDWLQPASNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW--RKSNP 136
                       RVLK +  +     +H I R         F +   +V+  R  NP
Sbjct: 60  ------------RVLKKDALMVSFYGWHRIDRFMAAWIRAGFSVAGHLVFIDRNLNP 104


>gi|316997321|dbj|BAJ52769.1| type II DNA modification enzyme [Campylobacter lari]
          Length = 672

 Score = 42.7 bits (99), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           K+  T KPE LL RI    +    ++LD F GSGT+ A A KL+R ++
Sbjct: 625 KIFDTPKPEKLLKRICDIGSNQNSLVLDFFVGSGTTIATAHKLKRKWL 672


>gi|255020805|ref|ZP_05292861.1| DNA methylase, putative [Acidithiobacillus caldus ATCC 51756]
 gi|254969596|gb|EET27102.1| DNA methylase, putative [Acidithiobacillus caldus ATCC 51756]
          Length = 970

 Score = 42.7 bits (99), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 38/63 (60%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           L+  Q    ++ R ++  T PGD++LDP  GSGT+  VA++  R +I I+  +  + +A 
Sbjct: 547 LYVVQTNPTVVQRCMLMCTDPGDLVLDPTCGSGTTAYVAEQWGRRWITIDTSRVPLALAR 606

Query: 263 KRI 265
           +R+
Sbjct: 607 QRL 609


>gi|261837517|gb|ACX97283.1| adenine methyltransferase [Helicobacter pylori 51]
          Length = 343

 Score = 42.7 bits (99), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 31/49 (63%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           +PT+K   LL  I+ +S+    I+LD F GSGT+   A  L+R FIGI+
Sbjct: 263 YPTEKNAQLLDLIIKTSSNKDSIVLDCFCGSGTTLKSAFLLQRKFIGID 311


>gi|17225550|gb|AAL37471.1|AF328924_4 type II DNA modification enzyme [Helicobacter pylori]
          Length = 343

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 31/49 (63%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           +PT+K   LL  I+ +S+    I+LD F GSGT+   A  L+R FIGI+
Sbjct: 263 YPTEKNAQLLDLIIKTSSNKDSIVLDCFCGSGTTLKSAFLLQRKFIGID 311


>gi|308061353|gb|ADO03241.1| type II DNA modification enzyme [Helicobacter pylori Cuz20]
          Length = 346

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 31/49 (63%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           +PT+K   LL  I+ +S+    I+LD F GSGT+   A  L+R FIGI+
Sbjct: 266 YPTEKNAQLLDLIIKTSSNKDSIVLDCFCGSGTTLKSAFLLQRKFIGID 314


>gi|218883796|ref|YP_002428178.1| DNA adenine modification methylase [Desulfurococcus kamchatkensis
           1221n]
 gi|218765412|gb|ACL10811.1| DNA adenine modification methylase [Desulfurococcus kamchatkensis
           1221n]
          Length = 317

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 213 LSRILVSS-TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           ++R+L+   + PGDI+LDP  GSGT+   AK L R+ IG+++  + + +   R+
Sbjct: 74  VARLLIERYSNPGDIVLDPMIGSGTTCIEAKLLGRNCIGVDISYEAVILTLHRL 127


>gi|237755447|ref|ZP_04584071.1| modification methylase MjaII [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237692379|gb|EEP61363.1| modification methylase MjaII [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 152

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 17/115 (14%)

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           R R++ N  E L+      + K Y   YD     N+  +   +W +     SE  R K  
Sbjct: 38  RIRKYGNNGEVLV---SLKELKEY---YDKTYKINQQKEENINWSLSFAEYSEAERTKHV 91

Query: 201 EKLHPTQKP--EALLSRILVSST---------KPGDIILDPFFGSGTSGAVAKKL 244
            ++HP +      L+   L S T         K GDI+LDPF GSGT+   A +L
Sbjct: 92  HRIHPYKGKFIPQLVEYFLDSHTDSFKKEVYFKAGDIVLDPFCGSGTTLVQANEL 146


>gi|167589701|ref|ZP_02382089.1| DNA methylase N-4/N-6 domain protein [Burkholderia ubonensis Bu]
          Length = 294

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 204 HPTQKPEALLSRILVSSTKPGD-IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           HP+ KP+A + +I+ +    G  ++LDPF G+G++ A A  +     G+E+  ++  +AT
Sbjct: 216 HPSLKPQAFMRQIVRAVLPLGQGVVLDPFMGAGSTLAAANAIGYESCGVEVDSEFFALAT 275

Query: 263 KRIASVQPL 271
             +  +  L
Sbjct: 276 NAVPQLAAL 284


>gi|313125852|ref|YP_004036122.1| DNA modification methylase [Halogeometricum borinquense DSM 11551]
 gi|312292217|gb|ADQ66677.1| DNA modification methylase [Halogeometricum borinquense DSM 11551]
          Length = 372

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 115/307 (37%), Gaps = 54/307 (17%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNL-QLNGQLYRPDHSLVDAVTDSWDKF 75
            E + +++ G++   +  +   +V+L+   PPY + ++   L+              D  
Sbjct: 1   MESRHRVVVGDA-RTMSDIADDAVELVVTSPPYPMVEMWDDLFSELTDEAGPALRDGDGE 59

Query: 76  SSFEA-YDAFTRAWLLACRRVLKPNGTLWV--------IGS----YHNIFRIGTMLQNLN 122
           ++FEA + A    W     RVL P G   +        +G     Y N  R+      L 
Sbjct: 60  AAFEAMHSALDDVWA-EISRVLVPGGIACINVGDATRTVGDSFRVYPNHARVTDAFVELG 118

Query: 123 FWILNDIVWRK-SNPMPNFRGRRF--QNA-----HETLIWASPSPKAK----GYTFNYDA 170
           F  L D++WRK +N    F G      NA     HE ++       ++    G T  Y++
Sbjct: 119 FEPLPDVLWRKPTNSAAKFMGSGMIPPNAYVTLEHEYVLVFRNGTDSRAFDPGETRRYES 178

Query: 171 LKAANEDVQMRSD-WLIPICSGSE---RLR----NKDGE------------------KLH 204
                E     SD W     +G E   R R    + DGE                  +  
Sbjct: 179 AYFWEERNAWFSDVWTDVAGTGQEVAARTRAHTGSGDGEIADGGNVYDLDAESGDELRER 238

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
               P  +  R++   +  GD +LDPFFG+GT+   A    R  +G E++  ++D    R
Sbjct: 239 TAAFPFEIPYRLVNMYSVYGDTVLDPFFGTGTTSLAAMVAGRDSVGYELEDAFVDAFDAR 298

Query: 265 IASVQPL 271
                 L
Sbjct: 299 ATGAPTL 305


>gi|108562473|ref|YP_626789.1| type II DNA modification enzyme [Helicobacter pylori HPAG1]
 gi|107836246|gb|ABF84115.1| type II DNA modification enzyme [Helicobacter pylori HPAG1]
          Length = 343

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 31/49 (63%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           +PT+K   LL  I+ +S+    I+LD F GSGT+   A  L+R FIGI+
Sbjct: 263 YPTEKNAQLLDLIIKTSSNKDSIVLDCFCGSGTTLKSAFLLQRKFIGID 311


>gi|330465467|ref|YP_004403210.1| DNA methylase N-4/N-6 domain-containing protein [Verrucosispora
           maris AB-18-032]
 gi|328808438|gb|AEB42610.1| DNA methylase N-4/N-6 domain-containing protein [Verrucosispora
           maris AB-18-032]
          Length = 331

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 4/113 (3%)

Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK--DGEKLHPTQKPEAL 212
           ASP    +G   +YD    A+ D    S W     +G  + R +       HP +   A+
Sbjct: 20  ASPGNDYQGRHHDYDDRHRADPD--GLSVWTTAQTTGPVQRRGRYVPESVKHPARMLPAI 77

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
            +  + + T+PGD++LDP  G GT+   A    R   GIE +  + +IA   I
Sbjct: 78  AAHAIDAYTQPGDLVLDPMCGIGTTLVEAVHAGRDAFGIEYEPQWSNIADANI 130


>gi|295091780|emb|CBK77887.1| DNA modification methylase [Clostridium cf. saccharolyticum K10]
          Length = 303

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 33/67 (49%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +HPTQKP  L   ++ + T  G+++ D   GSGT+   A    R FI  E    +   A 
Sbjct: 227 IHPTQKPVELCEYLIQTYTNEGEVVADICAGSGTTAVAALNTGRRFICFENAPVFYGPAV 286

Query: 263 KRIASVQ 269
           +RI   +
Sbjct: 287 ERIEQAR 293


>gi|17225498|gb|AAL37434.1|AF328909_3 type II DNA modification enzyme [Helicobacter pylori]
          Length = 343

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 31/49 (63%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           +PT+K   LL  I+ +S+    I+LD F GSGT+   A  L+R FIGI+
Sbjct: 263 YPTEKNAQLLDLIIKTSSNKDSIVLDCFCGSGTTLKSAFLLQRKFIGID 311


>gi|239931605|ref|ZP_04688558.1| DNA methylase [Streptomyces ghanaensis ATCC 14672]
          Length = 468

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 35/54 (64%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           ++ R ++ +T PGD++LDP  GSGT+  VA++  R +I I+  +  I +A  R+
Sbjct: 8   VIERCMLMATDPGDLVLDPTCGSGTTAYVAEQWGRRWITIDTSRVAIALARHRL 61


>gi|209522912|ref|ZP_03271469.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
 gi|209496499|gb|EDZ96797.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
          Length = 886

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 74/162 (45%), Gaps = 34/162 (20%)

Query: 19  WKDKIIKGNSISVLEKLP-----AKSVDLIFADPPYNLQLNGQLYRP------------- 60
           W +++I G+S+  +  L      A  V +I+ DPPY ++  G  ++P             
Sbjct: 165 WVNRMILGDSLITMNSLVQYEGMAGKVQMIYMDPPYGVKF-GSNFQPFVKKRDVKHNEDE 223

Query: 61  ----DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
               +  +V A  D+W+      +Y ++ R  LL  R +L  +G+++V  S  N+  +  
Sbjct: 224 HFTREPEMVKAYRDTWE--LGLHSYLSYLRDRLLLARELLTESGSVFVQISDENVHHVRE 281

Query: 117 MLQNL----NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
           ++  +    NF+    I ++ S+P+     +R  +  + L+W
Sbjct: 282 LMDEVFGAENFFSF--ISYKTSSPL---GAKRLPSVCDYLLW 318



 Score = 39.7 bits (91), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 35/54 (64%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           ++ R L+ +T PGDI+LD   GSGT+  VA++  R +I  ++ +  + +A +R+
Sbjct: 466 IIERCLLMTTDPGDIVLDITCGSGTTAYVAEQWGRRWITCDVSRVPLALARQRL 519


>gi|186472281|ref|YP_001859623.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           phymatum STM815]
 gi|184194613|gb|ACC72577.1| DNA methylase N-4/N-6 domain protein [Burkholderia phymatum STM815]
          Length = 374

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 3/64 (4%)

Query: 204 HPTQKPEALLSRILVSSTKPGD--IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           HP+ KP+A + R +V +  P +  I+LDPF G+G++ A A  +     G+E+ +++  +A
Sbjct: 298 HPSLKPQAFM-RQIVRAVLPLEEGIVLDPFMGAGSTLAAANAVGYQSCGVELDEEFFALA 356

Query: 262 TKRI 265
            K +
Sbjct: 357 AKAV 360


>gi|17225502|gb|AAL37437.1|AF328910_2 type II DNA modification enzyme [Helicobacter pylori]
          Length = 343

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 31/49 (63%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           +PT+K   LL  I+ +S+    I+LD F GSGT+   A  L+R FIGI+
Sbjct: 263 YPTEKNAQLLDLIIKTSSNKDSIVLDCFCGSGTTLKSAFLLQRKFIGID 311


>gi|113474753|ref|YP_720814.1| hypothetical protein Tery_0950 [Trichodesmium erythraeum IMS101]
 gi|110165801|gb|ABG50341.1| hypothetical protein Tery_0950 [Trichodesmium erythraeum IMS101]
          Length = 501

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 32/55 (58%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           +KP   LS ++ S T   DIILDPF GSG     +   +R FIGI++    +++A
Sbjct: 42  KKPIECLSFLIESLTTENDIILDPFLGSGLVARESISRKRRFIGIDINPISVELA 96


>gi|304439187|ref|ZP_07399105.1| DNA (cytosine-5-)-methyltransferase [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304372319|gb|EFM25907.1| DNA (cytosine-5-)-methyltransferase [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 340

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 184 WLIPICSGSERLRNKDGEK-LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           W  P  +G+ER++   G K  H  QKP  ++  ++ +S++  D+I +PF G  ++   A 
Sbjct: 258 WDRPPLNGTERIKIPSGSKSAHLNQKPLDIMQLLIEASSEFKDVIWEPFGGLFSASLAAT 317

Query: 243 KLRRSFIGIEMKQDYIDIATKRI 265
            L R   G E+   Y  +  +R 
Sbjct: 318 NLNRIAYGAEIDPMYYKVGIERF 340


>gi|333011769|gb|EGK31175.1| DNA methylase domain protein [Shigella flexneri K-227]
          Length = 141

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 15/113 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPY---LVGFRDRQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
                       RVLK +  +     ++ + R  +  +N  F ++  +V+ K+
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKN 100


>gi|15611116|ref|NP_222767.1| putative type II DNA modification enzyme (methyltransferase)
           [Helicobacter pylori J99]
 gi|4154550|gb|AAD05627.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
           [Helicobacter pylori J99]
          Length = 343

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 31/49 (63%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           +PT+K   LL  I+ +S+    I+LD F GSGT+   A  L+R FIGI+
Sbjct: 263 YPTEKNAQLLDLIIKTSSNKDSIVLDCFCGSGTTLKSAFLLQRKFIGID 311


>gi|17225506|gb|AAL37440.1|AF328911_2 type II DNA modification enzyme [Helicobacter pylori]
          Length = 343

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 31/49 (63%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           +PT+K   LL  I+ +S+    I+LD F GSGT+   A  L+R FIGI+
Sbjct: 263 YPTEKNAQLLDLIIKTSSNKDSIVLDCFCGSGTTLKSAFLLQRKFIGID 311


>gi|206603420|gb|EDZ39900.1| putative type III restriction-modification system, methylation
           subunit [Leptospirillum sp. Group II '5-way CG']
          Length = 856

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 39/69 (56%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G  ++  Q    ++ R L+ ++ PGD++ DP  GSGT+  VA++  R +I  +  +  + 
Sbjct: 417 GASIYVVQTSTKVIERCLLMTSDPGDLVFDPTCGSGTTAYVAEQWGRRWITCDTSRVALT 476

Query: 260 IATKRIASV 268
           +A +R+ + 
Sbjct: 477 LAKQRLMTA 485



 Score = 39.7 bits (91), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 25/125 (20%)

Query: 19  WKDKIIKGNSISVLEKLPAKS-----VDLIFADPPYNLQLNGQLYRP-----------DH 62
           W +++I G+S+ V+  L  K      V +I+ DPPY ++  G  ++P           D 
Sbjct: 123 WSNRLIAGDSLLVMNSLLEKEGMAGKVQMIYIDPPYGIRY-GSNFQPFVNKRDVKDGKDE 181

Query: 63  SL------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
            L      + A  D+W+      +Y  F R  LL  R +L  +G+ +V  S  N+  +  
Sbjct: 182 DLNQEPETLKAFRDTWE--VGIHSYLTFLRDRLLLARELLHESGSCFVQISDENVHHVRE 239

Query: 117 MLQNL 121
           ++  +
Sbjct: 240 LMDEV 244


>gi|322691068|ref|YP_004220638.1| phage DNA methylase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320455924|dbj|BAJ66546.1| putative phage DNA methylase [Bifidobacterium longum subsp. longum
           JCM 1217]
          Length = 407

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPT KP  L+  ++   T P  ++L+PF GSG +    +      +  EM  DY+ +  +
Sbjct: 337 HPTVKPLELMRWLVRLVTPPDGLVLEPFAGSGATLEACRVENMRCVAAEMDSDYVRLIAR 396

Query: 264 RIA 266
           R+A
Sbjct: 397 RMA 399


>gi|320353483|ref|YP_004194822.1| adenine-specific DNA-methyltransferase [Desulfobulbus propionicus
           DSM 2032]
 gi|320121985|gb|ADW17531.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfobulbus propionicus DSM 2032]
          Length = 529

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 34/69 (49%), Gaps = 6/69 (8%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYID 259
           T KP  L+ RIL  +T    IILD F GSGT+G     L       R+FI IEM      
Sbjct: 330 TPKPTRLIDRILHIATDKDAIILDSFAGSGTTGHAVLNLNRQDGGNRTFILIEMMDYAET 389

Query: 260 IATKRIASV 268
           I  +RI  V
Sbjct: 390 ITAERIKRV 398


>gi|317013475|gb|ADU80911.1| putative type II DNA modification enzyme (methyltransferase)
           [Helicobacter pylori Gambia94/24]
          Length = 343

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 31/49 (63%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           +PT+K   LL  I+ +S+    I+LD F GSGT+   A  L+R FIGI+
Sbjct: 263 YPTEKNAQLLDLIIKTSSNKDSIVLDCFCGSGTTLKSAFLLQRKFIGID 311


>gi|154499070|ref|ZP_02037448.1| hypothetical protein BACCAP_03062 [Bacteroides capillosus ATCC
           29799]
 gi|150271910|gb|EDM99136.1| hypothetical protein BACCAP_03062 [Bacteroides capillosus ATCC
           29799]
          Length = 529

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 8/76 (10%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEM 253
           G+    T KP  L+ RIL  ++ P  IILD F GSGT+      +       R FI +EM
Sbjct: 323 GDMPFDTPKPSRLIERILQIASDPDSIILDSFAGSGTTAHAVLNMNKADGGNRKFILVEM 382

Query: 254 KQDYID-IATKRIASV 268
             DY D I  +R+  V
Sbjct: 383 -MDYADSITAERVKRV 397


>gi|28198738|ref|NP_779052.1| methyltransferase, type III restriction-modification system
           [Xylella fastidiosa Temecula1]
 gi|182681431|ref|YP_001829591.1| site-specific DNA-methyltransferase (adenine-specific) [Xylella
           fastidiosa M23]
 gi|28056829|gb|AAO28701.1| methyltransferase, type III restriction-modification system
           [Xylella fastidiosa Temecula1]
 gi|182631541|gb|ACB92317.1| Site-specific DNA-methyltransferase (adenine-specific) [Xylella
           fastidiosa M23]
 gi|307579882|gb|ADN63851.1| site-specific DNA-methyltransferase (adenine-specific) [Xylella
           fastidiosa subsp. fastidiosa GB514]
          Length = 542

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T KP  L+ RIL  ++ PGD +LD F GSGT G    KL     G    + +I I+    
Sbjct: 337 TPKPVQLMERILRIASNPGDTVLDFFAGSGTFGQAVAKLNAEDGG---HRKFILISNTEA 393

Query: 266 ASVQPLGNI 274
              QP  N+
Sbjct: 394 TQAQPDKNL 402


>gi|182682259|ref|YP_001830419.1| DNA methylase N-4/N-6 domain-containing protein [Xylella fastidiosa
           M23]
 gi|182632369|gb|ACB93145.1| DNA methylase N-4/N-6 domain protein [Xylella fastidiosa M23]
          Length = 158

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP   P  L  R + S     + +LDPF GSGT    A+ L   ++GIE    Y++++  
Sbjct: 93  HPAPFPVELAQRCIESVG--AEPVLDPFMGSGTIAVAAEILGYDWVGIEKSPKYVEMSLD 150

Query: 264 RIASVQ 269
           R+ S++
Sbjct: 151 RLKSLK 156


>gi|71899324|ref|ZP_00681485.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
 gi|71730950|gb|EAO33020.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
          Length = 196

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 36/183 (19%)

Query: 94  RVLKPNGTLWVIGSYHNIFRI-GTMLQN-----LNFWILNDIVWRKSNPMPNFRGRRFQN 147
           R+L+ +G ++    Y++ +R+   +LQ+       F +   I+W+++  + NF    F  
Sbjct: 41  RLLRNDGAIF----YNHKWRVQAGLLQDRTDIVTGFPVRQIIIWQRNGGI-NFNSGYFLP 95

Query: 148 AHETL-IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
            +E + + A P        F       A  DV     W IP          ++ +  HP 
Sbjct: 96  TYEVIYLIAKPD-------FKLKPKANAIGDV-----WTIP----------QESKNPHPA 133

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
             P  L  R + S     + +LDPF GSGT    A+ L   ++GIE    Y++++  R+ 
Sbjct: 134 PFPVELAQRCIESVG--AEPVLDPFMGSGTIAVAAEILGYDWVGIEKSPKYVEMSLDRLK 191

Query: 267 SVQ 269
           S++
Sbjct: 192 SLK 194


>gi|332531557|ref|ZP_08407454.1| DNA methylase N-4/N-6 domain-containing protein [Hylemonella
           gracilis ATCC 19624]
 gi|332038920|gb|EGI75349.1| DNA methylase N-4/N-6 domain-containing protein [Hylemonella
           gracilis ATCC 19624]
          Length = 990

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 39/64 (60%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           +++  Q  E ++ R L+ +T PGD++LD   GSGT+  VA++  R +I I+  +  + +A
Sbjct: 450 QIYVVQTNERVVQRCLLLATDPGDLVLDITCGSGTTAYVAEQWGRRWITIDTSRVALALA 509

Query: 262 TKRI 265
             RI
Sbjct: 510 RARI 513



 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 29/143 (20%)

Query: 5   NSLAINENQNSIFE----WKDKIIKGNSISVLEKLPAKS-----VDLIFADPPYNLQLN- 54
           N L  NE +   ++    W +++I G+S++V+  L  +      V  I+ DPPY ++ N 
Sbjct: 119 NGLPSNEAKTEFYQHDAHWANRMILGDSLAVMASLAEREGLRGKVQCIYFDPPYGIKFNS 178

Query: 55  ----------------GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKP 98
                           G + R +   V A  D+W       +Y  + R  L   R +L  
Sbjct: 179 NFQWSTTSRDVKDGNAGHITR-EPEQVKAFRDTWR--DGIHSYLTYLRDRLTVARDLLTD 235

Query: 99  NGTLWVIGSYHNIFRIGTMLQNL 121
           +G+++V     N+ R+  ++  +
Sbjct: 236 SGSIFVQIGDENVHRVRAVMDEV 258


>gi|74318294|ref|YP_316034.1| adenine specific DNA methylase [Thiobacillus denitrificans ATCC
           25259]
 gi|74057789|gb|AAZ98229.1| adenine specific DNA methylase [Thiobacillus denitrificans ATCC
           25259]
          Length = 559

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 6/69 (8%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYID 259
           T KP AL+ R++  +    DI+LD F GSGT+G    KL       R F+ IE +     
Sbjct: 348 TPKPSALIERVIQIAASSSDIVLDSFAGSGTTGHAVMKLNAQDSGARRFVMIETESYADT 407

Query: 260 IATKRIASV 268
           +  +RI  V
Sbjct: 408 LTAERIRRV 416


>gi|158313294|ref|YP_001505802.1| putative RNA methylase [Frankia sp. EAN1pec]
 gi|158108699|gb|ABW10896.1| putative RNA methylase [Frankia sp. EAN1pec]
          Length = 463

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 9/81 (11%)

Query: 188 ICSGSERLRNKD----GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           I S SERL          K HP    +AL+       ++PGD++LDPF GSGT  A A +
Sbjct: 39  ISSDSERLLVHSLFRFPAKFHPPVA-QALIRNF----SEPGDLVLDPFCGSGTLLAEAAR 93

Query: 244 LRRSFIGIEMKQDYIDIATKR 264
           +RR  IG ++    + +++ +
Sbjct: 94  MRRRSIGTDVDPVAVSVSSAK 114


>gi|312877586|ref|ZP_07737545.1| adenine-specific DNA methylase [Caldicellulosiruptor lactoaceticus
           6A]
 gi|311795661|gb|EFR12031.1| adenine-specific DNA methylase [Caldicellulosiruptor lactoaceticus
           6A]
          Length = 416

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 4/76 (5%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +P   P  L   ++ S TK  DI+LDPF GSGT    A K  R+ IG+++    I I+  
Sbjct: 32  YPAMMPAPLAEFLIQSFTKRNDIVLDPFCGSGTVLYEALKNGRNAIGVDINPLAILISNV 91

Query: 264 RIASVQPLGNIELTVL 279
           +I     +G IEL+ L
Sbjct: 92  KIN----IGKIELSKL 103


>gi|21673736|ref|NP_661801.1| type III restriction system methylase [Chlorobium tepidum TLS]
 gi|21646860|gb|AAM72143.1| type III restriction system methylase [Chlorobium tepidum TLS]
          Length = 669

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 67/153 (43%), Gaps = 27/153 (17%)

Query: 23  IIKGNSISVL---EKLPAKSVDLIFADPPYNLQLNGQLYRPDH---------SLVDAVTD 70
           +I+G+++ VL   +K  A  + LI+ DPPYN         PD           L   V  
Sbjct: 101 MIEGDNLEVLKLLQKSYAGKIKLIYIDPPYN--TGKDFVYPDDFKDNIRNYLELTGQVEG 158

Query: 71  SWDKFSSFEAYDAFTRAW-------LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
                S+ EA   F   W       L   R++L P G + V    H +  +  +L++L F
Sbjct: 159 GRKISSNTEASGRFHTDWLNMMYPRLKIARQLLSPTGVIAVHIDEHELEALVIVLRDL-F 217

Query: 124 WILNDI---VWRKSNPMPNFRGRRFQNAHETLI 153
              N++   +W K NP  + RG  +Q  HE+L+
Sbjct: 218 GEENELGVTIWDKRNPKGDSRGIAYQ--HESLV 248


>gi|213855633|ref|ZP_03383873.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Typhi str.
           M223]
          Length = 171

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 10/63 (15%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L    A +VD+I+ DPPYN   +G +Y 
Sbjct: 95  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY- 147

Query: 60  PDH 62
           PDH
Sbjct: 148 PDH 150


>gi|113477117|ref|YP_723178.1| ParB-like nuclease [Trichodesmium erythraeum IMS101]
 gi|110168165|gb|ABG52705.1| ParB-like nuclease [Trichodesmium erythraeum IMS101]
          Length = 419

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 25/41 (60%)

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           ++  E  HP +KP   L   +   TKPGD I+DPF GSGT+
Sbjct: 375 DETNETSHPGRKPLDFLVTWIEKLTKPGDFIIDPFLGSGTT 415


>gi|17225510|gb|AAL37443.1|AF328912_2 type II DNA modification enzyme [Helicobacter pylori]
          Length = 315

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 31/49 (63%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           +PT+K   LL  I+ +S+    I+LD F GSGT+   A  L+R FIGI+
Sbjct: 235 YPTEKNAQLLDLIIKTSSNKDSIVLDCFCGSGTTLKSAFLLQRKFIGID 283


>gi|304389868|ref|ZP_07371827.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315656924|ref|ZP_07909811.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|304327044|gb|EFL94283.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315492879|gb|EFU82483.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 411

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           RN D    HPT KP  LL+  + +ST+   I+LD F GSG++    +   R    +E+ +
Sbjct: 313 RNAD----HPTSKPLDLLAYPIGNSTQANAIVLDTFAGSGSTLMACEATDRICYCMELDE 368

Query: 256 DYIDIATKRIA 266
            Y  +  +R A
Sbjct: 369 KYASVILRRYA 379


>gi|224418017|ref|ZP_03656023.1| adenine-specific DNA methylase [Helicobacter canadensis MIT
           98-5491]
 gi|253827350|ref|ZP_04870235.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313141558|ref|ZP_07803751.1| type II dna modification enzyme [Helicobacter canadensis MIT
           98-5491]
 gi|253510756|gb|EES89415.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313130589|gb|EFR48206.1| type II dna modification enzyme [Helicobacter canadensis MIT
           98-5491]
          Length = 859

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 4/59 (6%)

Query: 214 SRILVSST----KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           S+I VS T      G+I+LD F GSGT+ A A KL R ++G+EM + +  +   R+  V
Sbjct: 671 SKIDVSLTLNTISNGNIVLDFFAGSGTTLATAHKLGRKWLGVEMGEHFYQVVIPRMKKV 729


>gi|332884123|gb|EGK04393.1| hypothetical protein HMPREF9456_03417 [Dysgonomonas mossii DSM
           22836]
          Length = 229

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 203 LHPTQKPEALLSRIL-----VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           +HPTQKP  L+ R+L     +   KP  ++LD F GS ++      L    I  E+  +Y
Sbjct: 147 IHPTQKPPRLIERLLALVCKIEPNKPKPLVLDTFRGSASTDIACMNLGVDCISFEIDDEY 206

Query: 258 IDIATKR 264
            +   +R
Sbjct: 207 FEKGEER 213


>gi|282163636|ref|YP_003356021.1| putative DNA methylase [Methanocella paludicola SANAE]
 gi|282155950|dbj|BAI61038.1| putative DNA methylase [Methanocella paludicola SANAE]
          Length = 351

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 31/62 (50%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP      ++   ++  TK G  ++DPF G G++    K+  R   G E+ + Y DI  K
Sbjct: 128 HPATYSPTMIEDFILFFTKEGMKVIDPFAGIGSTLVACKRTNRIGYGTELNKKYYDIILK 187

Query: 264 RI 265
           R+
Sbjct: 188 RV 189


>gi|254169106|ref|ZP_04875943.1| hypothetical protein ABOONEI_48 [Aciduliprofundum boonei T469]
 gi|197621945|gb|EDY34523.1| hypothetical protein ABOONEI_48 [Aciduliprofundum boonei T469]
          Length = 273

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 13/121 (10%)

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI----LVSSTKPGDIILDPF 231
           +++   S WL P         ++D   +H  +     + +I    ++  TK G+ +LD F
Sbjct: 31  DEIITDSLWLFP---------SRDNSGMHTPKYHGNFIPQIPRQAMLRFTKRGEWVLDTF 81

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFN 291
            G GT+   AK+L R+ IGIE+ ++  ++A + I   +   N+   ++ G  T+  +  +
Sbjct: 82  AGLGTTLIEAKRLGRNAIGIEIDENTANMAKELIEQEENPYNVYTDIIIGDSTKEEIYED 141

Query: 292 L 292
           L
Sbjct: 142 L 142


>gi|257059386|ref|YP_003137274.1| methyltransferase [Cyanothece sp. PCC 8802]
 gi|256589552|gb|ACV00439.1| methyltransferase [Cyanothece sp. PCC 8802]
          Length = 179

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 9/58 (15%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           QKN   +  N  S      KII+G+ I+VL+ L  +S D I+ DPPY    N QLY+P
Sbjct: 77  QKNWKQVANNNQSF-----KIIRGDVINVLKTLAGQSFDRIYFDPPY----NSQLYQP 125


>gi|329765952|ref|ZP_08257515.1| DNA modification methylase [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329137583|gb|EGG41856.1| DNA modification methylase [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 465

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 192 SERLRNKDGEKLHPT--QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           SE+ R K   +LHP   +    L+   L    K  D+ILDPF GSGT+ AV  +L    I
Sbjct: 94  SEKERTKHIHRLHPYLGKFIPQLVEYYLQKYFKVEDLILDPFMGSGTTLAVCSELGMKSI 153

Query: 250 GIEMKQ 255
           GI++ +
Sbjct: 154 GIDISE 159


>gi|300867534|ref|ZP_07112184.1| putative type III restriction-modification system, methylation
           subunit [Oscillatoria sp. PCC 6506]
 gi|300334422|emb|CBN57354.1| putative type III restriction-modification system, methylation
           subunit [Oscillatoria sp. PCC 6506]
          Length = 872

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 40/67 (59%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           +++  Q  +  + R ++ +TKPGD++LD   GSGT+  VA++  R +I  +  +  I +A
Sbjct: 419 RIYVVQTNQTAIQRCILMTTKPGDLVLDITCGSGTTAYVAEQWGRRWITCDTSRVAITLA 478

Query: 262 TKRIASV 268
            +R+ + 
Sbjct: 479 KQRLMTA 485



 Score = 39.3 bits (90), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 27/125 (21%), Positives = 56/125 (44%), Gaps = 25/125 (20%)

Query: 19  WKDKIIKGNSISVLEKLPAKS-----VDLIFADPPYNLQLNGQLYRP------------- 60
           W ++++ G+S+ V+  L  K      V +I+ DPPY ++  G  ++P             
Sbjct: 123 WSNRLVAGDSLLVMNSLLEKEGMAGQVQMIYFDPPYGIKY-GSNFQPFVNKRDVKDGKDE 181

Query: 61  ----DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
               +  ++ A  D+W+      +Y  + R  LL  R +L   G+++V  S  N+  +  
Sbjct: 182 DLTQEPEMIKAFRDTWE--LGIHSYLTYLRDRLLLARELLSETGSIFVQISDENLHHVRE 239

Query: 117 MLQNL 121
           ++  +
Sbjct: 240 LMDEV 244


>gi|15669175|ref|NP_247980.1| type II R/M system modification methyltransferase
           [Methanocaldococcus jannaschii DSM 2661]
 gi|2500155|sp|Q58392|MTM1_METJA RecName: Full=Modification methylase MjaI; Short=M.MjaI; AltName:
           Full=N-4 cytosine-specific methyltransferase MjaI
 gi|1591647|gb|AAB98988.1| modification methylase, type II R/M system 1 [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 303

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 7/159 (4%)

Query: 118 LQNLNFWILNDIVWRKSNPMPN-FRGRRF--QNAHETLIWASPSPKAKGYTFNY---DAL 171
            + + F  L  I+W+K +  PN F G  F   NA+ TL         KG    +   D L
Sbjct: 130 FEKIGFVTLPYILWKKPSNKPNAFLGSGFLPPNAYVTLDVEYILIFRKGKPRKFKPKDPL 189

Query: 172 KAANEDVQMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
           + A+   +   D W   I       +     +      PE +  R++   +  GD +LDP
Sbjct: 190 RYASAYTKEERDRWFSQIWEIVGDKQTHPKIERRTASFPEEIPRRLIRMFSIIGDTVLDP 249

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           F G+GT+   A +L+R+ IG E+ +    I  ++I   Q
Sbjct: 250 FLGTGTTVKAAIELKRNSIGYEIDKSLKPIIEEKIGIKQ 288


>gi|315506723|ref|YP_004085610.1| DNA methylase n-4/n-6 domain protein [Micromonospora sp. L5]
 gi|315413342|gb|ADU11459.1| DNA methylase N-4/N-6 domain protein [Micromonospora sp. L5]
          Length = 280

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +      +  + + ++PGD++ DP  G GT+   A  L R  +GI+++  Y  IA  
Sbjct: 33  HPAKMLPHAAAHAIATYSRPGDLVFDPMCGVGTTLVEAMHLGRHGLGIDIEPRYTAIAEA 92

Query: 264 RIA 266
            IA
Sbjct: 93  NIA 95


>gi|290962585|ref|YP_003493767.1| hypothetical protein SCAB_82901 [Streptomyces scabiei 87.22]
 gi|260652111|emb|CBG75243.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 386

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 25/78 (32%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           LE  PA SVDL+  +PP++                         S     DA  R     
Sbjct: 302 LEDFPAGSVDLVLNNPPFH-------------------------SHQATTDATARRMFTG 336

Query: 92  CRRVLKPNGTLWVIGSYH 109
            RR L+P G LWV+G+ H
Sbjct: 337 ARRALRPGGELWVVGNRH 354


>gi|134098872|ref|YP_001104533.1| hypothetical protein SACE_2307 [Saccharopolyspora erythraea NRRL
           2338]
 gi|291005770|ref|ZP_06563743.1| hypothetical protein SeryN2_14718 [Saccharopolyspora erythraea NRRL
           2338]
 gi|133911495|emb|CAM01608.1| hypothetical protein SACE_2307 [Saccharopolyspora erythraea NRRL
           2338]
          Length = 323

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 33/69 (47%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +   A+    +   T+PGD++LDP  G GT+   A    R  +G+E +  +  IA  
Sbjct: 42  HPAKMLPAIARHAITHYTQPGDLVLDPMCGIGTTLVEAIHTGRHALGVEYEPHWAHIARD 101

Query: 264 RIASVQPLG 272
            IA     G
Sbjct: 102 NIALAHAAG 110


>gi|301307372|ref|ZP_07213377.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 124-1]
 gi|300837456|gb|EFK65216.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 124-1]
 gi|315253198|gb|EFU33166.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 85-1]
          Length = 182

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 15/113 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P   +D I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNGIDFILTDPPY---LVGFRDRQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKN 100


>gi|312111959|ref|YP_003990275.1| DNA methylase N-4/N-6 domain protein [Geobacillus sp. Y4.1MC1]
 gi|311217060|gb|ADP75664.1| DNA methylase N-4/N-6 domain protein [Geobacillus sp. Y4.1MC1]
          Length = 595

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 26/38 (68%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
           +PT+    +++  + S TKPGD++LD F GSGT+G  A
Sbjct: 27  YPTKISPEVIAVFIASHTKPGDVVLDTFGGSGTTGLAA 64


>gi|315654977|ref|ZP_07907882.1| adenine specific DNA methylase [Mobiluncus curtisii ATCC 51333]
 gi|315490938|gb|EFU80558.1| adenine specific DNA methylase [Mobiluncus curtisii ATCC 51333]
          Length = 644

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 11/78 (14%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIE 252
           DG     T KP  L+ R+L  ++ P  I+LD F GSGT+      L       R FI +E
Sbjct: 376 DGAVAFDTPKPTRLIERVLKVASSPHSIVLDSFAGSGTTAHAVLSLNKKDGGNRQFILVE 435

Query: 253 MKQDYIDIAT----KRIA 266
           +  DY D  T    KR+A
Sbjct: 436 LG-DYADSVTAERVKRVA 452


>gi|309792609|ref|ZP_07687070.1| putative RNA methylase [Oscillochloris trichoides DG6]
 gi|308225331|gb|EFO79098.1| putative RNA methylase [Oscillochloris trichoides DG6]
          Length = 283

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 37/68 (54%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           +LHP+ KP  L++ ++   TK G  +LDPF G G +        RS IG+++ + Y    
Sbjct: 52  RLHPSPKPPQLMAELVRFFTKRGGHVLDPFAGVGGTLIACSLEGRSAIGVDLSEVYAACY 111

Query: 262 TKRIASVQ 269
            +  A+++
Sbjct: 112 AEVCATLE 119


>gi|296448055|ref|ZP_06889959.1| DNA methylase N-4/N-6 domain protein [Methylosinus trichosporium
           OB3b]
 gi|296254455|gb|EFH01578.1| DNA methylase N-4/N-6 domain protein [Methylosinus trichosporium
           OB3b]
          Length = 70

 Score = 41.6 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 32/50 (64%)

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           +T PGD++LDP  GSGTS  VA++  R +I I+  +  + +A  R+ S +
Sbjct: 2   TTDPGDLVLDPTCGSGTSAHVAEQWGRRWITIDTSRVALALARTRLMSAR 51


>gi|126465494|ref|YP_001040603.1| DNA methylase N-4/N-6 domain-containing protein [Staphylothermus
           marinus F1]
 gi|126014317|gb|ABN69695.1| DNA methylase N-4/N-6 domain protein [Staphylothermus marinus F1]
          Length = 342

 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           P Q   AL+ +     T PGD +LDP  GSGT+   AK L R+ IG+++  + + +   R
Sbjct: 88  PPQMARALIQKY----TMPGDTVLDPMIGSGTTCIEAKLLGRNCIGVDINYNALMLTLHR 143

Query: 265 I 265
           +
Sbjct: 144 L 144


>gi|159896647|ref|YP_001542894.1| DNA methylase N-4/N-6 domain-containing protein [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159889686|gb|ABX02766.1| DNA methylase N-4/N-6 domain protein [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 353

 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 21/98 (21%)

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPT--------QKPEALLSRILVSSTKPGDII 227
           +D+   S W+I           +DG  +H          Q P  L+ R     TK GD +
Sbjct: 107 DDINTDSLWMID---------RRDGSGVHSAGYWGNFVPQIPNQLMRRY----TKQGDWV 153

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           +D F GSGT+   A++L R+ +G+E++   ++ A + +
Sbjct: 154 IDTFAGSGTTLIEAQRLGRNVLGVELQPHMVEYANQAV 191


>gi|325965444|ref|YP_004243349.1| DNA modification methylase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323471531|gb|ADX75215.1| DNA modification methylase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 611

 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 3/107 (2%)

Query: 187 PICSGSERLRNKDGEKLH--PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           PI + +   +     ++H  PT+ P   +   +++S++P  ++LDPF GSG +G  A   
Sbjct: 30  PIPTDTSSSKGSSAYQVHTYPTKVPPGAIEPFILASSEPDSVVLDPFCGSGMTGLAALNT 89

Query: 245 RRSFIGIEMKQDYIDIATKRIASVQP-LGNIELTVLTGKRTEPRVAF 290
            R  +  ++    + +A      V P +    +T LT   T   VA 
Sbjct: 90  GRRALLSDLAPGAVHLAHNHSHPVPPTVIAAAMTSLTTAMTPTEVAL 136


>gi|156741279|ref|YP_001431408.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156232607|gb|ABU57390.1| DNA methylase N-4/N-6 domain protein [Roseiflexus castenholzii DSM
           13941]
          Length = 356

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 184 WLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           W  P     ER+R     K  H  QKP  L+  I+ SS+  GD+I +PF G  T+G VA 
Sbjct: 272 WNHPPLHNRERVRFPGSSKYAHLNQKPVNLMELIIESSSNLGDVIWEPFGGLCTAGLVAY 331

Query: 243 KLRRSFIGIEMKQDYID 259
              R+    E+     D
Sbjct: 332 LTSRTAYCAEIDDHIYD 348


>gi|172036680|ref|YP_001803181.1| hypothetical protein cce_1765 [Cyanothece sp. ATCC 51142]
 gi|171698134|gb|ACB51115.1| hypothetical protein cce_1765 [Cyanothece sp. ATCC 51142]
          Length = 560

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           H    PE + S +L S     +IILDPF GS T+G VA K     I IE+ + Y D+A
Sbjct: 487 HTAPFPEKVPS-LLFSLITKDEIILDPFTGSMTTGRVALKYGIKSINIELHKHYCDLA 543


>gi|284048452|ref|YP_003398791.1| DNA methylase N-4/N-6 domain protein [Acidaminococcus fermentans
           DSM 20731]
 gi|283952673|gb|ADB47476.1| DNA methylase N-4/N-6 domain protein [Acidaminococcus fermentans
           DSM 20731]
          Length = 855

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 40/68 (58%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K++  Q P  +  R ++ ++ P D++LD   GSGT+  VA++  R +I  +  +  I++
Sbjct: 438 DKMYVVQTPNEIPKRCILMTSDPDDLVLDITCGSGTTAYVAEQWGRRWITCDTSRVAIEL 497

Query: 261 ATKRIASV 268
           A +R+ + 
Sbjct: 498 AKERLMTA 505


>gi|290559536|gb|EFD92865.1| Methyltransferase type 11 [Candidatus Parvarchaeum acidophilus
           ARMAN-5]
          Length = 297

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 32/50 (64%)

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           +++  T P DI+LDP  GSGT+    K L R+ IG+++ ++ I IA  R+
Sbjct: 79  LILEYTNPEDIVLDPMNGSGTTLIECKLLGRNGIGVDINEEAIMIALDRL 128


>gi|332974814|gb|EGK11729.1| type III restriction-modification system methyltransferase
           [Psychrobacter sp. 1501(2011)]
          Length = 629

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 20/101 (19%)

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEK----------LHPTQKPEALLSRILVSS 220
           LK ANE  Q   ++      GS    N+DG K          L    KP  L+S ++  +
Sbjct: 355 LKDANEQGQAAVNFFNHTEFGS----NQDGSKELASLFGDAGLFSNPKPTKLISSLIKIA 410

Query: 221 TKPGDIILDPFFGSGTSGA------VAKKLRRSFIGIEMKQ 255
           TK  D+ILD F GSGT+        +   +RR FI I++ +
Sbjct: 411 TKEDDLILDFFAGSGTTADSTLQMNIEDSMRRKFILIQLDE 451


>gi|126668728|ref|ZP_01739678.1| putative site-specific DNA-methyltransferase [Marinobacter sp.
           ELB17]
 gi|126626828|gb|EAZ97475.1| putative site-specific DNA-methyltransferase [Marinobacter sp.
           ELB17]
          Length = 406

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 41/79 (51%)

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  S  ++   + G   H    P +L + ++   T+PGD+++DPF GS T+G  A++  R
Sbjct: 312 PAQSRYKKAARELGIAPHGAPFPLSLATFLIRFLTEPGDLVIDPFAGSLTTGDAAQREGR 371

Query: 247 SFIGIEMKQDYIDIATKRI 265
            ++ IE   +Y+     R 
Sbjct: 372 RWLMIECMWEYLRAGATRF 390


>gi|120537207|ref|YP_957264.1| DNA methylase N-4/N-6 domain-containing protein [Marinobacter
           aquaeolei VT8]
 gi|120327042|gb|ABM21349.1| DNA methylase N-4/N-6 domain protein [Marinobacter aquaeolei VT8]
          Length = 635

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 14/167 (8%)

Query: 23  IIKGN---SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           II+G+   S+ +L       + +I+ DPPYN      +Y  DH L     D W      E
Sbjct: 74  IIEGDNFDSLRLLRSTHRGRIRVIYIDPPYNTGSKDWVYN-DHYL--KKDDRWKHSKWLE 130

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI-LNDIVWRKSNPMP 138
               F    L   R +L P+G + V  +  N  R+  ++  +   + L  +VWR      
Sbjct: 131 ----FMYQRLSIARDLLTPDGVIMVSINDENRSRLELLMDEVMPGMRLGSMVWRTRQGSN 186

Query: 139 NFRGRRFQNAHE-TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
             +G    + HE  LI+ +P  + +GY  +++    +N D   R DW
Sbjct: 187 ADQGCFMSSDHEHILIYGNPGFQFRGYEKSFEMY--SNPDNDPRGDW 231



 Score = 40.4 bits (93), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 32/54 (59%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           G+  + N  G ++    KP  L+ ++L  +T+PGDI+LD F GSGT+     +L
Sbjct: 396 GATGVANIFGSRVFNYAKPATLIRQLLDQATRPGDIVLDFFAGSGTTAQAVLEL 449


>gi|192289131|ref|YP_001989736.1| DNA methylase N-4/N-6 domain protein [Rhodopseudomonas palustris
           TIE-1]
 gi|192282880|gb|ACE99260.1| DNA methylase N-4/N-6 domain protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 238

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 95/248 (38%), Gaps = 40/248 (16%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE------ 79
           G+++ ++  L    V  +  DPPY+    G +     S  +       K+  F+      
Sbjct: 16  GDALEIMPTL--GPVGDVLTDPPYSS--GGNVRDLAKSTNEKYLTGPAKYPEFQGDTRDQ 71

Query: 80  -AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV-WRKSNPM 137
            ++ A++  W+   R + +P   L     +  +      +Q    W+   IV W K+   
Sbjct: 72  RSFLAWSTLWMGRARALTRPGAMLVCFSDWRQLPVTSDAVQCAG-WVWRGIVPWDKTEGS 130

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
              +GR ++   E  +W +                 A   V        P+  G  R+ +
Sbjct: 131 RPQKGR-YRVQAEYALWGT---------------NGARPPVG-------PVAPGVFRM-S 166

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
               K H   KP  L+  ++     P   ILDPF GSGT G    +    ++GIE+ + Y
Sbjct: 167 VPRIKHHVAGKPVDLMLGLMGVLDGP---ILDPFMGSGTVGIACLQRGLPYVGIEVDETY 223

Query: 258 IDIATKRI 265
            +IA  R+
Sbjct: 224 FEIACGRL 231


>gi|224538181|ref|ZP_03678720.1| hypothetical protein BACCELL_03072 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520203|gb|EEF89308.1| hypothetical protein BACCELL_03072 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 327

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 31/57 (54%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           K HP + P  L    +   T   D+++D F GS T+G V   L R ++G E+ ++Y+
Sbjct: 228 KSHPARFPTKLPEFFVNMLTDENDLVVDIFAGSCTTGEVCDNLHRRWLGFELDRNYV 284


>gi|312173964|emb|CBX82218.1| K07319 putative adenine-specific DNA-methyltransferase [Erwinia
           amylovora ATCC BAA-2158]
          Length = 210

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 21/117 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSFEA 80
           +++  +S+  ++ LP  S+DLI  DPPY        YR    + D   D  WD  + + A
Sbjct: 11  ELVNADSLVYIKTLPDNSIDLIATDPPY--------YR----VKDCAWDRQWDTVTDYLA 58

Query: 81  Y-DAFTRAWLLACRRVLKPNGTLWVI-GSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
           + D F    L    RVLKPNG+L++  GS   +     +L      +L+ + W K N
Sbjct: 59  WLDEF----LAEFWRVLKPNGSLYLFCGS--KLAADTEILVRQRMQVLSAVTWAKPN 109


>gi|261414483|ref|YP_003248166.1| DNA methylase N-4/N-6 domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261370939|gb|ACX73684.1| DNA methylase N-4/N-6 domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302327525|gb|ADL26726.1| putative type II DNA modification methyltransferase [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 292

 Score = 41.2 bits (95), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 204 HPTQKPEALLSRILVSSTKPGD-IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           HP+ KP++ L +I+ ++   G+ I+LDPF GSG++ A A  L    IG+E   ++ 
Sbjct: 216 HPSIKPQSFLRQIVRAALPLGEGIVLDPFSGSGSTLAAADYLGYDSIGVEKDTEFF 271


>gi|312622142|ref|YP_004023755.1| DNA methylase N-4/N-6 domain-containing protein
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202609|gb|ADQ45936.1| DNA methylase N-4/N-6 domain protein [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 416

 Score = 41.2 bits (95), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 4/76 (5%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +P   P  L   ++ S T+  DI+LDPF GSGT    A K  R+ IG+++    I I+  
Sbjct: 32  YPAMMPAPLAEFLIQSFTRRNDIVLDPFCGSGTVLYEALKNGRNAIGVDINPLAILISNV 91

Query: 264 RIASVQPLGNIELTVL 279
           +I     +G IEL+ L
Sbjct: 92  KIN----IGKIELSKL 103


>gi|218960644|ref|YP_001740419.1| Modification methylase MjaII (N-4 cytosine-specific
           methyltransferase MjaII) (M.MjaII) [Candidatus
           Cloacamonas acidaminovorans]
 gi|167729301|emb|CAO80212.1| Modification methylase MjaII (N-4 cytosine-specific
           methyltransferase MjaII) (M.MjaII) [Candidatus
           Cloacamonas acidaminovorans]
          Length = 529

 Score = 41.2 bits (95), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 14/112 (12%)

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKP--EALLSRILVSST---------KPGDIILDPF 231
           +W++     +E    K   +LHP +      L+   L + T          PGDI+LDPF
Sbjct: 80  NWVLAFDKYTEAETTKHVHRLHPYKGKFIPQLVEYFLDTHTDNFKQEVFFHPGDIVLDPF 139

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA--SVQPLGNIELTVLTG 281
            GSGT+   A +L  + IGI++    + I++ +I    +Q L   EL  LT 
Sbjct: 140 VGSGTTLVQANELGINAIGIDVSAFNVLISSTKIMGYDLQSLS-FELNKLTN 190


>gi|37527336|ref|NP_930680.1| hypothetical protein plu3462 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36786770|emb|CAE15836.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 157

 Score = 41.2 bits (95), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 19/113 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY- 81
           +I  +S+  ++ LP   +DLI  DPPY        +R      D     W+  +++ A+ 
Sbjct: 12  LINDDSLRFIKTLPDNCIDLIATDPPY--------FRVKECGWDR---QWEDVTAYLAWL 60

Query: 82  -DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
            +  T  W     RVLKPNG+L++      +     +L    F +LN I+W K
Sbjct: 61  DEVLTEFW-----RVLKPNGSLYIFCG-SRLASDTEILVRERFNVLNHIIWAK 107


>gi|218884519|ref|YP_002428901.1| SufBD protein [Desulfurococcus kamchatkensis 1221n]
 gi|218766135|gb|ACL11534.1| SufBD protein [Desulfurococcus kamchatkensis 1221n]
          Length = 257

 Score = 41.2 bits (95), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 30/45 (66%)

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T+PGD++LDP  GSGT+   AK L R+ I +++  + + +A  R+
Sbjct: 3   TRPGDVVLDPMVGSGTTLIEAKLLGRNSIDVDINYNAVMLALHRL 47


>gi|300825607|ref|ZP_07105655.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 119-7]
 gi|300521952|gb|EFK43021.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 119-7]
          Length = 195

 Score = 41.2 bits (95), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 69/166 (41%), Gaps = 36/166 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  ++ L   SVDLI  DPPY                    + WD  + ++  
Sbjct: 11  ELINTDCLEFIQTLSENSVDLIVTDPPY---------------FKVKPEGWD--NQWKGD 53

Query: 82  DAFTRAWLLACR----RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           D + + WL  C     RVLKP G+L++   +     I  M++   F +LN I+W K  P 
Sbjct: 54  DDYLK-WLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAK--PS 109

Query: 138 PNFRG------RRFQNAHETLIWASP-----SPKAKGYTFNYDALK 172
             + G      R +  A E +++A        PK  GY      LK
Sbjct: 110 GRWNGCNKESLRAYFPATERILFAEHYQGPYQPKNDGYAAKERELK 155


>gi|220930422|ref|YP_002507331.1| DNA methylase N-4/N-6 domain protein [Clostridium cellulolyticum
           H10]
 gi|220000750|gb|ACL77351.1| DNA methylase N-4/N-6 domain protein [Clostridium cellulolyticum
           H10]
          Length = 325

 Score = 41.2 bits (95), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           ++D   + P Q    ++ R L   T P DI+L PF G G+    A ++ R  +GIE+K+ 
Sbjct: 248 DRDERHICPLQL--DVIERALQLWTNPNDIVLSPFAGIGSEVYKAVQMGRRAVGIELKES 305

Query: 257 YIDIATKRIASVQP 270
           Y   A     S++P
Sbjct: 306 YYTQAVINCRSLEP 319


>gi|309379190|emb|CBX22147.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 677

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 26/154 (16%)

Query: 23  IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA------------ 67
           +I G+++ VL+ L      SV +I+ DPPYN  L+G +Y+ D     A            
Sbjct: 149 LICGDNLEVLKHLKNAYTNSVKMIYIDPPYNTGLDGFVYQDDRKFTPAELARLANIDEEE 208

Query: 68  ---VTDSWDKFS-SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-- 121
              + D  DK S S  A+  F    L   R +L+ +G +++    +   ++  +   +  
Sbjct: 209 AARILDFTDKGSNSHSAWLTFMYPRLYVARELLREDGVIFISIDDNEAAQLKLLCDEVFG 268

Query: 122 --NFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
             NF  +  I+W K    P    + F   H+ LI
Sbjct: 269 EGNF--VEQIIWEKKF-SPQNDAKYFSENHDYLI 299



 Score = 36.6 bits (83), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 191 GSERLRNK-DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
            S+ LR   DG+    T KP  L+ + L  +T P D+ILD F GSGT+     +L
Sbjct: 424 ASQELRKLFDGDSYFDTPKPIRLIVQTLRLTTNPDDLILDFFAGSGTTAHAVMQL 478


>gi|297526226|ref|YP_003668250.1| putative RNA methylase [Staphylothermus hellenicus DSM 12710]
 gi|297255142|gb|ADI31351.1| putative RNA methylase [Staphylothermus hellenicus DSM 12710]
          Length = 338

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 34/57 (59%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           P  +   ++++ T PG+ +LDP  GSGT+   AK L R+ IG+++  + + +   R+
Sbjct: 85  PPQMARALILAYTMPGETVLDPMIGSGTTCIEAKLLGRNCIGVDINYNAVILTLHRL 141


>gi|326381662|ref|ZP_08203356.1| hypothetical protein SCNU_01905 [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199909|gb|EGD57089.1| hypothetical protein SCNU_01905 [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 698

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 14/131 (10%)

Query: 243 KLRRSFIGIEMKQDYIDIATKR----IASVQPLGNIELTVLTGKRTEPR--VAFNLLVER 296
           +L  S  G E  ++ ID  T+     + +V P+ +     +   +++P+  V    L++ 
Sbjct: 562 RLIESTSGAEWDEEMIDQRTESMIDTLLTVWPVPDGHTGTVLDPQSKPQEWVELKHLIDA 621

Query: 297 GLIQPGQILTNAQGNISAT---VCADGTL-ISGTELGSIHRVGAKVSGSETCNGWNFWYF 352
           GL+ PG+++     +++ T   V A GTL + G E  +    G  V    T NGW+FW  
Sbjct: 622 GLLAPGEVVQPVSQDLAGTRAIVTAHGTLALDGREFSTPSGAGHHVRKRAT-NGWHFWVL 680

Query: 353 E---KLGELHS 360
           +   KL +L +
Sbjct: 681 DDGRKLNDLRA 691


>gi|302668809|ref|YP_003832634.1| DNA modification methylase [Butyrivibrio proteoclasticus B316]
 gi|302397149|gb|ADL36052.1| DNA modification methylase [Butyrivibrio proteoclasticus B316]
          Length = 309

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 18/171 (10%)

Query: 94  RVLKPNGTLWVI------GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
           RVLK    L  I       +Y  ++ +  M +   F     + W+K   + N  GR+ +N
Sbjct: 118 RVLKDGSFLVEIIPAESATNYEYLYELKQMAKRAGFEYYACVPWKKGTFVSN-TGRKAKN 176

Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANED-----VQMRSDWLIPICSGSERLRNKDGEK 202
             + +I++    K K      D  +  + +         ++ ++P     + +  KD  +
Sbjct: 177 TEDIMIFS----KGKARALRPDKQRGLDPNGNPTRFMSGANGMLPTMFDVQAVPRKD--Q 230

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           +  ++KP  L  ++L   TK  +++LD F GSG  G      +R  I IE+
Sbjct: 231 IAQSEKPVPLFEQLLDYLTKENELVLDQFAGSGALGEACLNKKRKSILIEL 281


>gi|110633553|ref|YP_673761.1| DNA methylase N-4/N-6 [Mesorhizobium sp. BNC1]
 gi|110284537|gb|ABG62596.1| DNA methylase N-4/N-6 [Chelativorans sp. BNC1]
          Length = 306

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 36/79 (45%)

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           ++   D ++ H    P  +  R L   +  GD++  PF G G+ G V+ +  R FIG E+
Sbjct: 217 KVARSDKDEKHLCPMPLNITRRALRMWSNRGDVVYSPFMGIGSEGVVSIEEGRKFIGTEL 276

Query: 254 KQDYIDIATKRIASVQPLG 272
              Y   A K +   +  G
Sbjct: 277 NPAYFRQAIKNLIDAEASG 295


>gi|315638959|ref|ZP_07894130.1| type II DNA modification methylase EcaI [Campylobacter upsaliensis
           JV21]
 gi|315480988|gb|EFU71621.1| type II DNA modification methylase EcaI [Campylobacter upsaliensis
           JV21]
          Length = 368

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 10/127 (7%)

Query: 39  SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKP 98
           S+DLI+ DPP+      +L     +  D+     DKF S E+Y  F    L+  R+++  
Sbjct: 54  SIDLIYIDPPFGTNNIFKLGSTMSAEKDSKIAYKDKF-SLESYLEFLYCRLVWIRKLMSE 112

Query: 99  NGTLWV-----IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
            G+L++     +G Y  I     +    NF  +NDI   K NP  NF+ + + N  + ++
Sbjct: 113 KGSLYLHIDSKMGHYVKIL-CDEVFGRENF--INDITRIKCNP-KNFKRKAYGNIKDMIL 168

Query: 154 WASPSPK 160
           + + S +
Sbjct: 169 FYAKSSQ 175



 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 27/49 (55%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           +PT+K  A+L RI+  S+     ++D F G G     A  L R FIGI+
Sbjct: 286 YPTEKNRAMLRRIIAMSSNEDSRVMDCFCGGGGFLQEALNLGRKFIGID 334


>gi|315295556|gb|EFU54880.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 16-3]
          Length = 159

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 15/113 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P   +D I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNGIDFILTDPPY---LVGFRDRQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKN 100


>gi|289595716|ref|YP_003482412.1| DNA methylase N-4/N-6 domain protein [Aciduliprofundum boonei T469]
 gi|289533503|gb|ADD07850.1| DNA methylase N-4/N-6 domain protein [Aciduliprofundum boonei T469]
          Length = 257

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 13/121 (10%)

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI----LVSSTKPGDIILDPF 231
           +++   S WL P         ++D   +H  +     + +I    ++  TK G+ +LD F
Sbjct: 15  DEIITDSLWLFP---------SRDNSGMHTPKYHGNFIPQIPRQAMLRFTKRGEWVLDTF 65

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFN 291
            G GT+   AK+L R+ IGIE+ ++  ++A + I   +   N+   ++ G  T+     +
Sbjct: 66  AGLGTTLIEAKRLGRNAIGIEIDENTANMARELIEQEENPYNVYTDIIIGDSTKEETYED 125

Query: 292 L 292
           L
Sbjct: 126 L 126


>gi|188574834|ref|YP_001911763.1| methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188519286|gb|ACD57231.1| methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 543

 Score = 40.8 bits (94), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 24/39 (61%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           T KP  L+ RIL  ++KPGD +LD F GSGT      KL
Sbjct: 337 TPKPVQLMERILRIASKPGDTVLDFFAGSGTFAQAVAKL 375


>gi|58583834|ref|YP_202850.1| methyltransferase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84625637|ref|YP_453009.1| methyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|58428428|gb|AAW77465.1| methyltransferase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84369577|dbj|BAE70735.1| methyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 543

 Score = 40.8 bits (94), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 24/39 (61%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           T KP  L+ RIL  ++KPGD +LD F GSGT      KL
Sbjct: 337 TPKPVQLMERILRIASKPGDTVLDFFAGSGTFAQAVAKL 375


>gi|324015253|gb|EGB84472.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 60-1]
          Length = 148

 Score = 40.8 bits (94), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 15/109 (13%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           GN I V+ ++P  ++D I  DPPY   L G   R   ++    TD W + +  E Y    
Sbjct: 2   GNCIDVMARIPDNAIDFILTDPPY---LVGFRDRQGRTIAGDKTDEWLQPACNEMY---- 54

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
                   RVLK +  +     ++ + R  +  +N  F ++  +V+ K+
Sbjct: 55  --------RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKN 95


>gi|307566477|ref|ZP_07628909.1| DNA (cytosine-5-)-methyltransferase [Prevotella amnii CRIS 21A-A]
 gi|307344821|gb|EFN90226.1| DNA (cytosine-5-)-methyltransferase [Prevotella amnii CRIS 21A-A]
          Length = 565

 Score = 40.8 bits (94), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 38/74 (51%), Gaps = 17/74 (22%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIE-------------MKQDY--IDIATKRIASV 268
           GD ILDPF GSGT+   A +L  + IGI+             M+ DY  +D   KRI SV
Sbjct: 168 GDNILDPFAGSGTTLVQANELNMNAIGIDISEFNTLINNCKLMRYDYDNLDYEIKRITSV 227

Query: 269 QPLGNIELTVLTGK 282
             L NIE+   T K
Sbjct: 228 --LKNIEIHDNTNK 239


>gi|289669890|ref|ZP_06490965.1| methyltransferase [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 543

 Score = 40.8 bits (94), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 24/39 (61%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           T KP  L+ RIL  ++KPGD +LD F GSGT      KL
Sbjct: 337 TPKPVQLMERILRIASKPGDTVLDFFAGSGTFAQAVAKL 375


>gi|257868440|ref|ZP_05648093.1| predicted protein [Enterococcus gallinarum EG2]
 gi|257802604|gb|EEV31426.1| predicted protein [Enterococcus gallinarum EG2]
          Length = 216

 Score = 40.8 bits (94), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 50/136 (36%), Gaps = 38/136 (27%)

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
           VWR+ N             HE ++  S SPK   Y  NY             S W+  I 
Sbjct: 27  VWRRRNH-SELNEENISVEHEYILCYSKSPK---YNVNYKF-----------STWIDTIS 71

Query: 190 SGSER---------------------LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
           + SER                     L NK+    +P  KP  LL  +     + GD IL
Sbjct: 72  TNSEREDEFYELESMYQNEARKYINDLFNKEVVTNYP--KPVTLLEEVFSIFLRDGDKIL 129

Query: 229 DPFFGSGTSGAVAKKL 244
           D F GSGT+G    KL
Sbjct: 130 DIFGGSGTTGEACMKL 145


>gi|297161974|gb|ADI11686.1| putative RNA methylase [Streptomyces bingchenggensis BCW-1]
          Length = 317

 Score = 40.8 bits (94), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 35/67 (52%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G   HP +   A+ +  + + T+PGD++LDP  G GT+   A  L R   G E +  + +
Sbjct: 26  GSADHPAKMLPAIAAHAIRTYTQPGDLVLDPMCGIGTTLVEAVHLGRHAFGTEYEPKWAN 85

Query: 260 IATKRIA 266
           +A   +A
Sbjct: 86  MARTNLA 92


>gi|78356786|ref|YP_388235.1| adenine specific DNA methylase Mod-like [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78219191|gb|ABB38540.1| Adenine specific DNA methylase Mod-like protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 445

 Score = 40.8 bits (94), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 6/71 (8%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS------GAVAKKL 244
           G + + N  G+ +  T KP ALL R++   +K  DIILD F GS  +      G V +K 
Sbjct: 191 GKKEVLNIFGDNVFDTPKPTALLQRLIALVSKEEDIILDFFSGSCATAHAVMKGNVYEKT 250

Query: 245 RRSFIGIEMKQ 255
           +R FI +++ +
Sbjct: 251 KRKFIMVQLPE 261


>gi|15838562|ref|NP_299250.1| methyltransferase [Xylella fastidiosa 9a5c]
 gi|9107074|gb|AAF84770.1|AE004016_4 methyltransferase [Xylella fastidiosa 9a5c]
          Length = 534

 Score = 40.8 bits (94), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           DGEK+  T KP +L+ RIL  +T     +LD F GSGT+     KL     G    + +I
Sbjct: 322 DGEKMFNTPKPVSLIERILSVATDKEAWVLDFFAGSGTTAHAVAKLNAEDGG---HRRFI 378

Query: 259 DIATKRIASVQPLGNI 274
            I+       QP  N+
Sbjct: 379 LISNTEATQAQPDKNL 394


>gi|323650434|gb|ADX97291.1| M.EcoNI [Escherichia coli]
          Length = 731

 Score = 40.8 bits (94), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 200 GEKLHPTQKP-EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           GE ++    P    +  IL+   + G ++LDP+ GS T+G  A     + IG+E  +DY 
Sbjct: 663 GENIYGHSAPFSKKIPNILLEKMEKGSLVLDPYSGSMTTGRAALDFGINSIGMEFHEDYC 722

Query: 259 DIATKRI 265
            ++ K I
Sbjct: 723 HLSPKEI 729


>gi|296109108|ref|YP_003616057.1| DNA methylase N-4/N-6 domain protein [Methanocaldococcus infernus
           ME]
 gi|295433922|gb|ADG13093.1| DNA methylase N-4/N-6 domain protein [Methanocaldococcus infernus
           ME]
          Length = 305

 Score = 40.8 bits (94), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 33/50 (66%)

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           +++  +K G+ +LDPF GSGT+   AK L R+ IG+++ +D + +   R+
Sbjct: 79  LILRYSKEGETVLDPFVGSGTTLIEAKLLFRNAIGVDINRDAVMLTLDRL 128


>gi|325266724|ref|ZP_08133400.1| hypothetical protein HMPREF9098_1127 [Kingella denitrificans ATCC
           33394]
 gi|324981833|gb|EGC17469.1| hypothetical protein HMPREF9098_1127 [Kingella denitrificans ATCC
           33394]
          Length = 880

 Score = 40.8 bits (94), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 33/53 (62%), Gaps = 2/53 (3%)

Query: 203 LHP--TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
            HP  T+ P  ++ +++   T+PG+I+LD F G+G +G  A++  R  + +++
Sbjct: 111 FHPYHTKVPPEVIKKLIEHYTRPGEIVLDAFSGTGMTGVAARECGRHGVTVDL 163



 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 12/97 (12%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY---------NLQLNGQLYRPDHSLVDAVTDSWD 73
           I+   S + L ++P  S+D I+ DPP+         NL L G L        +AV +   
Sbjct: 435 IVSAQSATNLNQIPDASIDYIYTDPPFGANIIYSEMNLILEGWLRVLSSEKPEAVINE-A 493

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
           K  +F+ Y    R+      RVLKP    W+   +HN
Sbjct: 494 KNKAFDDYGLLMRSVFREYYRVLKPG--RWITVEFHN 528


>gi|163783066|ref|ZP_02178061.1| hypothetical protein HG1285_00785 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881746|gb|EDP75255.1| hypothetical protein HG1285_00785 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 150

 Score = 40.8 bits (94), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 30/41 (73%), Gaps = 5/41 (12%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           K ++I+G+S+ VLE+L  +  ++IFADPPYN     +LY+P
Sbjct: 72  KGRVIRGDSLKVLEQLKVQP-EVIFADPPYNF----ELYKP 107


>gi|218515000|ref|ZP_03511840.1| putative DNA methylase protein [Rhizobium etli 8C-3]
          Length = 76

 Score = 40.8 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 27/44 (61%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           P AL+S +L   TKPGD + DPF G GT+  V ++  R   GIE
Sbjct: 29  PGALVSALLDRFTKPGDAVFDPFVGLGTTFFVCEQRGRLPYGIE 72


>gi|254168572|ref|ZP_04875415.1| hypothetical protein ABOONEI_1264 [Aciduliprofundum boonei T469]
 gi|197622406|gb|EDY34978.1| hypothetical protein ABOONEI_1264 [Aciduliprofundum boonei T469]
          Length = 273

 Score = 40.8 bits (94), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 13/114 (11%)

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI----LVSSTKPGDIILDPF 231
           +++   S WL P         ++D   +H  +     + +I    ++  TK G+ +LD F
Sbjct: 31  DEIITDSLWLFP---------SRDNSGMHTPKYHGNFIPQIPRQAMLRFTKRGEWVLDTF 81

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
            G GT+   AK+L R+ IGIE+ ++  ++A + I   +   N+   ++ G  T+
Sbjct: 82  AGLGTTLIEAKRLGRNAIGIEIDENTANMARELIEQEENPYNVYTDIIIGDSTK 135


>gi|332715663|ref|YP_004443129.1| type III restriction-modification system StyLTI enzyme mod
           [Agrobacterium sp. H13-3]
 gi|325062348|gb|ADY66038.1| type III restriction-modification system StyLTI enzyme mod
           [Agrobacterium sp. H13-3]
          Length = 896

 Score = 40.8 bits (94), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 38/64 (59%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K +  Q  + ++ R L  ++ PGD++LD   GSGT+  VA++L R +I  +  +  I +A
Sbjct: 469 KSYVVQTSDEVVRRCLTMTSDPGDLVLDITCGSGTTAFVAEQLGRRWITCDTSRVPIALA 528

Query: 262 TKRI 265
            +R+
Sbjct: 529 RQRL 532


>gi|258646417|ref|ZP_05733886.1| DNA (cytosine-5-)-methyltransferase [Dialister invisus DSM 15470]
 gi|260403820|gb|EEW97367.1| DNA (cytosine-5-)-methyltransferase [Dialister invisus DSM 15470]
          Length = 324

 Score = 40.8 bits (94), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           KD   + P Q    L++R L   T P DI+LDPF   G+   VA ++ R  +G E+K+ Y
Sbjct: 248 KDERHICPLQL--DLIARCLELWTNPNDIVLDPFASIGSVPIVALQMGRRTMGFELKESY 305

Query: 258 IDIAT 262
              A 
Sbjct: 306 FKQAV 310


>gi|170730167|ref|YP_001775600.1| methyltransferase [Xylella fastidiosa M12]
 gi|167964960|gb|ACA11970.1| methyltransferase [Xylella fastidiosa M12]
          Length = 526

 Score = 40.8 bits (94), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           DGEK+  T KP +L+ RIL  +T     +LD F GSGT+     KL     G    + +I
Sbjct: 314 DGEKMFNTPKPVSLIERILSVTTDKEAWVLDFFAGSGTTAHAVAKLNAEDGG---HRRFI 370

Query: 259 DIATKRIASVQPLGNI 274
            I+       QP  N+
Sbjct: 371 LISNTEATQAQPDKNL 386


>gi|71897935|ref|ZP_00680140.1| Site-specific DNA-methyltransferase (adenine-specific) [Xylella
           fastidiosa Ann-1]
 gi|71732179|gb|EAO34234.1| Site-specific DNA-methyltransferase (adenine-specific) [Xylella
           fastidiosa Ann-1]
          Length = 534

 Score = 40.8 bits (94), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           DGEK+  T KP +L+ RIL  +T     +LD F GSGT+     KL     G    + +I
Sbjct: 322 DGEKMFNTPKPVSLIERILSVATDKEAWVLDFFAGSGTTAHAVAKLNAEDGG---HRRFI 378

Query: 259 DIATKRIASVQPLGNI 274
            I+       QP  N+
Sbjct: 379 LISNTEATQAQPDKNL 394


>gi|218661293|ref|ZP_03517223.1| putative DNA methylase protein [Rhizobium etli IE4771]
          Length = 202

 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 33/63 (52%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           P AL+S +L   TK GD + DPF G GT+  V ++  R   GIE  +   +   +RI + 
Sbjct: 13  PGALVSALLDRFTKQGDAVFDPFVGLGTTFFVCEQRGRLPYGIEADRQRYEWVRERITAK 72

Query: 269 QPL 271
             L
Sbjct: 73  HHL 75


>gi|21229692|ref|NP_635609.1| methyltransferase [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66766569|ref|YP_241331.1| methyltransferase [Xanthomonas campestris pv. campestris str. 8004]
 gi|21111176|gb|AAM39533.1| methyltransferase [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66571901|gb|AAY47311.1| methyltransferase [Xanthomonas campestris pv. campestris str. 8004]
          Length = 543

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 24/39 (61%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           T KP  L+ RIL  ++KPGD +LD F GSGT      KL
Sbjct: 337 TPKPIQLMERILSIASKPGDTVLDFFAGSGTFAQAVAKL 375


>gi|207110299|ref|ZP_03244461.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
           pylori HPKX_438_CA4C1]
          Length = 114

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 2/106 (1%)

Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL 305
           R FIGIE    YI  A KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L
Sbjct: 1   RYFIGIEKDSFYIKEAAKRLNNTRDKSDF-ITNLELETKPPKIPMSLLISKQLLKIGDFL 59

Query: 306 TNAQGNISATVCADGTLISGTEL-GSIHRVGAKVSGSETCNGWNFW 350
            +        V  +G +        SIH++ AK     T    NF+
Sbjct: 60  YSPNKEKICQVLENGQVRDNENYETSIHKMSAKYLNKTTIMAGNFF 105


>gi|261400646|ref|ZP_05986771.1| type III restriction-modification system EcoP15I, modification
           subunit [Neisseria lactamica ATCC 23970]
 gi|269209553|gb|EEZ76008.1| type III restriction-modification system EcoP15I, modification
           subunit [Neisseria lactamica ATCC 23970]
          Length = 568

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 85/202 (42%), Gaps = 44/202 (21%)

Query: 23  IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA------------ 67
           +I+G+++ VL+ L    A SV +I+ DPPYN   +G +Y+ D                  
Sbjct: 40  LIRGDNLEVLKHLKNAYANSVKMIYIDPPYNTGSDGFVYQDDRKFTPEELARLANIDEDE 99

Query: 68  ---VTDSWDKFS-SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
              + D  DK S S  A+  F    L   R +LK +G +++    +   ++         
Sbjct: 100 AARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVIFISIDDNEAAQLK-------- 151

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWA---SPSPKAKGYTFNYDALKAANEDVQM 180
            +L D V+ + N +            E +IW    SP   AK ++ N+D L    +++  
Sbjct: 152 -LLCDEVFGEGNFV------------EQIIWEKKFSPQNDAKYFSENHDYLICYAKNITE 198

Query: 181 RSDWLIPICSGSE-RLRNKDGE 201
               L+P   G+  R +N D +
Sbjct: 199 LEIKLLPRTEGTNARYKNIDND 220


>gi|317501178|ref|ZP_07959383.1| DNA methylase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316897354|gb|EFV19420.1| DNA methylase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 222

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 52/245 (21%), Positives = 88/245 (35%), Gaps = 45/245 (18%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLY--RPDHSLVDA-----VTDSWDKFSSFEAYDAF 84
           + + P K  D+   DPPY    N + Y  R + + +       + D+WD     E +D  
Sbjct: 4   MREFPDKFFDIAVVDPPYFAGPNKRRYYGRSESTTLIKRREYDIIDTWD-VPGMEYFDEL 62

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
            R         +  +  +W    +   F  G             IVW K      F    
Sbjct: 63  IR---------VSRHQIVWGCNYFDYHFGSGR------------IVWDKCRSNMTF---- 97

Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
              +   + + S     K + + +D +        +   W   I  G+++       ++H
Sbjct: 98  ---SDAEIAYCSLHDTVKTFRYMWDGMMQGK---SVDEGW---IQKGNKKTNE---HRIH 145

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PTQKP  L   I     KPG  +LD   GS +S     +    ++G E+ +     A KR
Sbjct: 146 PTQKPIDLYRWIAREYIKPGWNVLDTHTGSASSLIAYHEAGIRYVGFEINEKMYQKARKR 205

Query: 265 IASVQ 269
           +  V+
Sbjct: 206 LKEVE 210


>gi|156740418|ref|YP_001430547.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156231746|gb|ABU56529.1| DNA methylase N-4/N-6 domain protein [Roseiflexus castenholzii DSM
           13941]
          Length = 1028

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 14/129 (10%)

Query: 150 ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL--IPICSGSERL-RNKDGEKLHPT 206
           + L  + P+ + K   F    LK      ++ S W+  +P+ + + RL  N  G+++   
Sbjct: 685 KVLFPSDPTKRPKLKVF----LKERERATRLFSSWMEEVPLNAKATRLLDNILGQRVLLY 740

Query: 207 QKPEALLSRILVSS-TKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYID 259
            KP  L+  +   +     D++LD F GSGT+G     L      RR FI +EM Q +  
Sbjct: 741 PKPVELIESLARQTLMNEADVVLDYFAGSGTTGHAVINLNRKDGGRRKFILVEMAQYFDT 800

Query: 260 IATKRIASV 268
           +   RI  V
Sbjct: 801 VLLPRIKKV 809


>gi|240013868|ref|ZP_04720781.1| putative type III restriction-modification system methyltransferase
           [Neisseria gonorrhoeae DGI18]
          Length = 656

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 19/101 (18%)

Query: 23  IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA------------ 67
           +I+G+++ VL+ L    A SV +I+ DPPYN   +G +Y+ D     A            
Sbjct: 98  LIRGDNLEVLKHLKNAYANSVKMIYIDPPYNTGSDGFVYQDDRKFTPAELALLANIDEDE 157

Query: 68  ---VTDSWDKFS-SFEAYDAFTRAWLLACRRVLKPNGTLWV 104
              + D  DK S S  A+  F    L   R +LK +G +++
Sbjct: 158 AARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVIFI 198


>gi|218246340|ref|YP_002371711.1| methyltransferase [Cyanothece sp. PCC 8801]
 gi|218166818|gb|ACK65555.1| methyltransferase [Cyanothece sp. PCC 8801]
          Length = 179

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 4/51 (7%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           N  Q +  E   ++I+G+ I+VL+ L  +S D I+ DPPY    N QLY+P
Sbjct: 79  NWQQVATSEQTFQVIRGDVINVLKTLAGQSFDRIYFDPPY----NSQLYQP 125


>gi|45658071|ref|YP_002157.1| DNA methyltransferase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|45601312|gb|AAS70794.1| DNA methyltransferase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 364

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 36/61 (59%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           P  L +RI++  +  GDI+LDPF G+GT+   A    R+ IG +++   + +  + + S+
Sbjct: 217 PLELANRIILMYSLKGDIVLDPFLGTGTTTLAAIGNCRNSIGFDLEPGLLKVQLENLHSI 276

Query: 269 Q 269
           +
Sbjct: 277 K 277


>gi|24214246|ref|NP_711727.1| DNA methyltransferase [Leptospira interrogans serovar Lai str.
           56601]
 gi|24195157|gb|AAN48745.1| DNA methyltransferase [Leptospira interrogans serovar Lai str.
           56601]
          Length = 364

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 36/61 (59%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           P  L +RI++  +  GDI+LDPF G+GT+   A    R+ IG +++   + +  + + S+
Sbjct: 217 PLELANRIILMYSLKGDIVLDPFLGTGTTTLAAIGNCRNSIGFDLEPGLLKVQLENLHSI 276

Query: 269 Q 269
           +
Sbjct: 277 K 277


>gi|324010283|gb|EGB79502.1| hypothetical protein HMPREF9533_05738 [Escherichia coli MS 60-1]
          Length = 63

 Score = 40.4 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 28/44 (63%)

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           I+LDPF GSG++   A +  R +IGIE+ + Y     +R+ +VQ
Sbjct: 2   IVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLTAVQ 45


>gi|71559071|ref|YP_271798.1| putative adenine-specific DNA methylase [Salmonella enterica]
 gi|68166370|gb|AAY88131.1| putative adenine-specific DNA methylase [Salmonella enterica]
          Length = 157

 Score = 40.4 bits (93), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 15/113 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I GN + ++   P ++VD I  DPPY   L G   R   S+    TD W + +  + Y
Sbjct: 3   RLILGNCVDIMSGFPERAVDFILTDPPY---LVGFRDRSGRSIAGDRTDEWLQPACNQMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
                       RVLK +  L     ++ + R     ++  F ++  +V+ K+
Sbjct: 60  ------------RVLKKDALLVSFYGWNRVDRFMAAWKSAGFSVVGHLVFTKN 100


>gi|156743531|ref|YP_001433660.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156234859|gb|ABU59642.1| DNA methylase N-4/N-6 domain protein [Roseiflexus castenholzii DSM
           13941]
          Length = 372

 Score = 40.4 bits (93), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 29/39 (74%)

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           ++++  T+ GD++LDPF GSGT+   A++L R  IG+E+
Sbjct: 160 QLMLRYTRRGDLVLDPFAGSGTTLIEAQRLGRLAIGVEL 198


>gi|163785315|ref|ZP_02179963.1| DNA methylase N-4/N-6 domain protein [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159879418|gb|EDP73274.1| DNA methylase N-4/N-6 domain protein [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 386

 Score = 40.4 bits (93), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 6/67 (8%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYIDIA 261
           KP  L+ ++L  S+ P  +ILD F GSGT+     KL       R FI IEM   +  + 
Sbjct: 119 KPIELIEKVLRISSNPNSLILDFFAGSGTTAHAVMKLNNEDRGDRKFILIEMADYFETVI 178

Query: 262 TKRIASV 268
             RI  V
Sbjct: 179 IPRIKKV 185


>gi|194098944|ref|YP_002002009.1| Putative type III restriction-modification system methyltransferase
           [Neisseria gonorrhoeae NCCP11945]
 gi|239999224|ref|ZP_04719148.1| putative type III restriction-modification system methyltransferase
           [Neisseria gonorrhoeae 35/02]
 gi|240016311|ref|ZP_04722851.1| putative type III restriction-modification system methyltransferase
           [Neisseria gonorrhoeae FA6140]
 gi|240113199|ref|ZP_04727689.1| putative type III restriction-modification system methyltransferase
           [Neisseria gonorrhoeae MS11]
 gi|240115959|ref|ZP_04730021.1| putative type III restriction-modification system methyltransferase
           [Neisseria gonorrhoeae PID18]
 gi|240123804|ref|ZP_04736760.1| putative type III restriction-modification system methyltransferase
           [Neisseria gonorrhoeae PID332]
 gi|254493988|ref|ZP_05107159.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|260440228|ref|ZP_05794044.1| putative type III restriction-modification system methyltransferase
           [Neisseria gonorrhoeae DGI2]
 gi|268599279|ref|ZP_06133446.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268601624|ref|ZP_06135791.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268682428|ref|ZP_06149290.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|193934234|gb|ACF30058.1| Putative type III restriction-modification system methyltransferase
           [Neisseria gonorrhoeae NCCP11945]
 gi|226513028|gb|EEH62373.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268583410|gb|EEZ48086.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268585755|gb|EEZ50431.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268622712|gb|EEZ55112.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
          Length = 598

 Score = 40.4 bits (93), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 19/101 (18%)

Query: 23  IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA------------ 67
           +I+G+++ VL+ L    A SV +I+ DPPYN   +G +Y+ D     A            
Sbjct: 40  LIRGDNLEVLKHLKNAYANSVKMIYIDPPYNTGSDGFVYQDDRKFTPAELALLANIDEDE 99

Query: 68  ---VTDSWDKFS-SFEAYDAFTRAWLLACRRVLKPNGTLWV 104
              + D  DK S S  A+  F    L   R +LK +G +++
Sbjct: 100 AARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVIFI 140


>gi|125973034|ref|YP_001036944.1| DNA methylase N-4/N-6 [Clostridium thermocellum ATCC 27405]
 gi|125713259|gb|ABN51751.1| DNA methylase N-4/N-6 [Clostridium thermocellum ATCC 27405]
          Length = 371

 Score = 40.4 bits (93), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 32/62 (51%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           H    PE L+S ++   + PGD + D   G GT+   A  L R FIG ++ ++ +    +
Sbjct: 302 HEWGAPEELISELIERFSNPGDTVADWTVGGGTTAVCAVLLGRKFIGSDVDENAVKTTLR 361

Query: 264 RI 265
           R+
Sbjct: 362 RV 363


>gi|268595048|ref|ZP_06129215.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|291043524|ref|ZP_06569240.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|268548437|gb|EEZ43855.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|291011987|gb|EFE03976.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
          Length = 631

 Score = 40.4 bits (93), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 19/101 (18%)

Query: 23  IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA------------ 67
           +I+G+++ VL+ L    A SV +I+ DPPYN   +G +Y+ D     A            
Sbjct: 73  LIRGDNLEVLKHLKNAYANSVKMIYIDPPYNTGSDGFVYQDDRKFTPAELALLANIDEDE 132

Query: 68  ---VTDSWDKFS-SFEAYDAFTRAWLLACRRVLKPNGTLWV 104
              + D  DK S S  A+  F    L   R +LK +G +++
Sbjct: 133 AARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVIFI 173


>gi|308389379|gb|ADO31699.1| putative type III restriction-modification [Neisseria meningitidis
           alpha710]
          Length = 598

 Score = 40.4 bits (93), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 19/101 (18%)

Query: 23  IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA------------ 67
           +I+G+++ VL+ L    A SV +I+ DPPYN   +G +Y+ D     A            
Sbjct: 40  LIRGDNLEVLKHLKNAYANSVKMIYIDPPYNTGSDGFVYQDDRKFTPAELALLANIDEDE 99

Query: 68  ---VTDSWDKFS-SFEAYDAFTRAWLLACRRVLKPNGTLWV 104
              + D  DK S S  A+  F    L   R +LK +G +++
Sbjct: 100 AARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVIFI 140


>gi|206891175|ref|YP_002248577.1| DNA methylase domain protein [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206743113|gb|ACI22170.1| DNA methylase domain protein [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 389

 Score = 40.4 bits (93), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G   +P   P  ++  +L   T+PGD++LDP  GSGT+  V ++  R  I  ++     +
Sbjct: 165 GNNKYPGVTPAFIIYNLLKRYTEPGDLVLDPMAGSGTTFDVCREEGRRCIAFDISPTRSE 224

Query: 260 IATKRIASVQPLGN 273
           I      S+ PL N
Sbjct: 225 IIQNDARSI-PLDN 237


>gi|260583113|ref|ZP_05850894.1| conserved hypothetical protein [Haemophilus influenzae NT127]
 gi|260093825|gb|EEW77732.1| conserved hypothetical protein [Haemophilus influenzae NT127]
          Length = 452

 Score = 40.4 bits (93), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 210 EALLSRILVSSTKP-GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           + +L  IL S   P G  ILDPF G    G VA KL R++IG++++ + I+   K+
Sbjct: 222 DPVLCEILYSWFSPKGCQILDPFAGGSVRGIVASKLNRNYIGVDLRAEQIEANLKQ 277


>gi|148827547|ref|YP_001292300.1| hypothetical protein CGSHiGG_04860 [Haemophilus influenzae PittGG]
 gi|319775724|ref|YP_004138212.1| hypothetical protein HICON_10670 [Haemophilus influenzae F3047]
 gi|319896738|ref|YP_004134931.1| hypothetical protein HIBPF03950 [Haemophilus influenzae F3031]
 gi|148718789|gb|ABQ99916.1| hypothetical protein CGSHiGG_04860 [Haemophilus influenzae PittGG]
 gi|317432240|emb|CBY80592.1| conserved hypothetical protein [Haemophilus influenzae F3031]
 gi|317450315|emb|CBY86531.1| conserved hypothetical protein [Haemophilus influenzae F3047]
          Length = 451

 Score = 40.4 bits (93), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 210 EALLSRILVSSTKP-GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           + +L  IL S   P G  ILDPF G    G VA KL R++IG++++ + I+   K+
Sbjct: 221 DPVLCEILYSWFSPKGCQILDPFAGGSVRGIVASKLNRNYIGVDLRAEQIEANLKQ 276


>gi|240121438|ref|ZP_04734400.1| putative type III restriction-modification system methyltransferase
           [Neisseria gonorrhoeae PID24-1]
          Length = 671

 Score = 40.4 bits (93), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 19/101 (18%)

Query: 23  IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA------------ 67
           +I+G+++ VL+ L    A SV +I+ DPPYN   +G +Y+ D     A            
Sbjct: 113 LIRGDNLEVLKHLKNAYANSVKMIYIDPPYNTGSDGFVYQDDRKFTPAELALLANIDEDE 172

Query: 68  ---VTDSWDKFS-SFEAYDAFTRAWLLACRRVLKPNGTLWV 104
              + D  DK S S  A+  F    L   R +LK +G +++
Sbjct: 173 AARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVIFI 213


>gi|71901477|ref|ZP_00683565.1| DNA methylase [Xylella fastidiosa Ann-1]
 gi|71728777|gb|EAO30920.1| DNA methylase [Xylella fastidiosa Ann-1]
          Length = 100

 Score = 40.4 bits (93), Expect = 0.50,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 14/91 (15%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD----------HSLVDAVTDSWD- 73
           +G+++ +L  + + SVD +  DPPY    +G +   D          ++    V   +D 
Sbjct: 13  EGDALRLLCDIDSASVDAVITDPPY---CSGAMRMADRFKPTKRKYINNGTKHVAPDFDC 69

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
            F     + A++  WL  CRRV +P G L+V
Sbjct: 70  DFRDHRGFLAWSSQWLSECRRVTRPGGVLYV 100


>gi|317164509|gb|ADV08050.1| putative type III restriction-modification system methyltransferase
           [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 677

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 19/101 (18%)

Query: 23  IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA------------ 67
           +I+G+++ VL+ L    A SV +I+ DPPYN   +G +Y+ D     A            
Sbjct: 119 LIRGDNLEVLKHLKNAYANSVKMIYIDPPYNTGSDGFVYQDDRKFTPAELALLANIDEDE 178

Query: 68  ---VTDSWDKFS-SFEAYDAFTRAWLLACRRVLKPNGTLWV 104
              + D  DK S S  A+  F    L   R +LK +G +++
Sbjct: 179 AARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVIFI 219


>gi|147677458|ref|YP_001211673.1| hypothetical protein PTH_1123 [Pelotomaculum thermopropionicum SI]
 gi|146273555|dbj|BAF59304.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 413

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 2/98 (2%)

Query: 193 ERLRNKDGEKLHPT--QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           ER R K   +LHP   +    L+   L    KPG  +LDPF GSGT+   A +L  + IG
Sbjct: 49  ERERTKHVHRLHPYLGKFIPQLVEIFLRKYFKPGQTVLDPFCGSGTTLVQANELGINSIG 108

Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
            ++    + +   + A   P+   +      KRTE  V
Sbjct: 109 CDISAFNVLLCRAKTAEYDPVKAQKEIQDILKRTEAEV 146


>gi|295101251|emb|CBK98796.1| Adenine specific DNA methylase Mod [Faecalibacterium prausnitzii
           L2-6]
          Length = 529

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 8/76 (10%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEM 253
           GE    T KP  L+ RIL  ++    IILD F GSGT+      +       R FI +EM
Sbjct: 323 GEMPFDTPKPYHLIERILQIASDSDSIILDSFAGSGTTAHAVLNMNKADGGHRKFILVEM 382

Query: 254 KQDYID-IATKRIASV 268
             DY D I  +R+  V
Sbjct: 383 -MDYADSITAERVKRV 397


>gi|293398839|ref|ZP_06643004.1| type III restriction enzyme [Neisseria gonorrhoeae F62]
 gi|291610253|gb|EFF39363.1| type III restriction enzyme [Neisseria gonorrhoeae F62]
          Length = 682

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 19/101 (18%)

Query: 23  IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA------------ 67
           +I+G+++ VL+ L    A SV +I+ DPPYN   +G +Y+ D     A            
Sbjct: 124 LIRGDNLEVLKHLKNAYANSVKMIYIDPPYNTGSDGFVYQDDRKFTPAELALLANIDEDE 183

Query: 68  ---VTDSWDKFS-SFEAYDAFTRAWLLACRRVLKPNGTLWV 104
              + D  DK S S  A+  F    L   R +LK +G +++
Sbjct: 184 AARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVIFI 224


>gi|268596572|ref|ZP_06130739.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268603965|ref|ZP_06138132.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268684586|ref|ZP_06151448.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268550360|gb|EEZ45379.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268588096|gb|EEZ52772.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268624870|gb|EEZ57270.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
          Length = 686

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 19/101 (18%)

Query: 23  IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA------------ 67
           +I+G+++ VL+ L    A SV +I+ DPPYN   +G +Y+ D     A            
Sbjct: 128 LIRGDNLEVLKHLKNAYANSVKMIYIDPPYNTGSDGFVYQDDRKFTPAELALLANIDEDE 187

Query: 68  ---VTDSWDKFS-SFEAYDAFTRAWLLACRRVLKPNGTLWV 104
              + D  DK S S  A+  F    L   R +LK +G +++
Sbjct: 188 AARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVIFI 228


>gi|68249879|ref|YP_248991.1| hypothetical protein NTHI1522 [Haemophilus influenzae 86-028NP]
 gi|68058078|gb|AAX88331.1| hypothetical protein NTHI1522 [Haemophilus influenzae 86-028NP]
          Length = 319

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 210 EALLSRILVSSTKP-GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           + +L  IL S   P G  ILDPF G    G VA KL R++IG++++ + I+   K+
Sbjct: 222 DPVLCEILYSWFSPKGCQILDPFAGGSVRGIVASKLNRNYIGVDLRAEQIEANLKQ 277


>gi|59800979|ref|YP_207691.1| putative type III restriction-modification system methyltransferase
           [Neisseria gonorrhoeae FA 1090]
 gi|240080430|ref|ZP_04724973.1| putative type III restriction-modification system methyltransferase
           [Neisseria gonorrhoeae FA19]
 gi|240118256|ref|ZP_04732318.1| putative type III restriction-modification system methyltransferase
           [Neisseria gonorrhoeae PID1]
 gi|240125994|ref|ZP_04738880.1| putative type III restriction-modification system methyltransferase
           [Neisseria gonorrhoeae SK-92-679]
 gi|59717874|gb|AAW89279.1| putative type III restriction-modification system methyltransferase
           [Neisseria gonorrhoeae FA 1090]
          Length = 687

 Score = 40.0 bits (92), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 19/101 (18%)

Query: 23  IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA------------ 67
           +I+G+++ VL+ L    A SV +I+ DPPYN   +G +Y+ D     A            
Sbjct: 129 LIRGDNLEVLKHLKNAYANSVKMIYIDPPYNTGSDGFVYQDDRKFTPAELALLANIDEDE 188

Query: 68  ---VTDSWDKFS-SFEAYDAFTRAWLLACRRVLKPNGTLWV 104
              + D  DK S S  A+  F    L   R +LK +G +++
Sbjct: 189 AARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVIFI 229


>gi|85717371|ref|ZP_01048322.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
           Nb-311A]
 gi|85717503|ref|ZP_01048450.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
           Nb-311A]
 gi|85717707|ref|ZP_01048642.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
           Nb-311A]
 gi|85695482|gb|EAQ33405.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
           Nb-311A]
 gi|85695698|gb|EAQ33609.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
           Nb-311A]
 gi|85695782|gb|EAQ33689.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
           Nb-311A]
          Length = 432

 Score = 40.0 bits (92), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 94/235 (40%), Gaps = 10/235 (4%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
           +V   +  +   ++F DPPYN++++G +             +  + S  E +  F +A  
Sbjct: 182 TVAALMGTEQAQMVFTDPPYNVRIDGNVGGLGSIRHREFAMASGEMSEPE-FTGFLKASF 240

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAH 149
               R        ++   + ++  +      +   + N IVW K N      G  +++ H
Sbjct: 241 GNLTRHSIDGSIHYICMDWRHMAEMLNAGDGIYTELKNLIVWAKDN---GGMGTFYRSRH 297

Query: 150 ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
           E LI+A  +    G   +++  +         + W     +  +  R  D   LHPT KP
Sbjct: 298 E-LIFAFKN----GTAPHHNHFELGQHGRHRTNVWEYRGVNTMKAGR-LDELALHPTVKP 351

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            A+++  +   +  G I+LD F GSG++   A K  R     E    Y D   +R
Sbjct: 352 VAMIADAIKDVSSRGGIVLDLFAGSGSTLIAAHKTGRRAYVCEYDPIYCDRIIQR 406


>gi|268610664|ref|ZP_06144391.1| DNA methylase [Ruminococcus flavefaciens FD-1]
          Length = 419

 Score = 40.0 bits (92), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPT KP  LL   + +ST+   +++D F GSG++    +++ R    +E+ + Y  +  +
Sbjct: 325 HPTSKPLDLLGYPIGNSTQENAMVIDTFGGSGSTLMACEQMNRICYMMELDEKYASVILR 384

Query: 264 RIASVQPLGNIE 275
           R   V+  G+ E
Sbjct: 385 RY--VEDTGDAE 394


>gi|145629815|ref|ZP_01785609.1| hypothetical protein CGSHi22121_00882 [Haemophilus influenzae
           22.1-21]
 gi|144977961|gb|EDJ87749.1| hypothetical protein CGSHi22121_00882 [Haemophilus influenzae
           22.1-21]
          Length = 376

 Score = 40.0 bits (92), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 210 EALLSRILVSSTKP-GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           + +L  IL S   P G  ILDPF G    G VA KL R++IG++++ + I+   K+
Sbjct: 222 DPVLCEILYSWFSPKGCQILDPFAGGSVRGIVASKLNRNYIGVDLRAEQIEANLKQ 277


>gi|327253801|gb|EGE65430.1| DNA methylase [Escherichia coli STEC_7v]
          Length = 162

 Score = 40.0 bits (92), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 23/116 (19%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  + +  ++ LP  SVDLI  DPPY                    + WD  + ++  
Sbjct: 11  ELINADFLEFIQTLPENSVDLIVTDPPY---------------FKVKPEGWD--NQWKGD 53

Query: 82  DAFTRAWLLACRR----VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           D + + WL  C      VLKP G+L++   +     I  M++   F +LN I+W K
Sbjct: 54  DDYLK-WLDQCLAQFWWVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAK 107


>gi|295111386|emb|CBL28136.1| Adenine specific DNA methylase Mod [Synergistetes bacterium SGP1]
          Length = 574

 Score = 40.0 bits (92), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 6/76 (7%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIE 252
           DG     T KP  L+  +L  +  P  IILD F GSGT+      +      RR FI +E
Sbjct: 369 DGRATFDTPKPRRLVEFVLKIAGDPDSIILDSFAGSGTTAHAVLNMNKADGGRRRFILVE 428

Query: 253 MKQDYIDIATKRIASV 268
           M      I  +R+  V
Sbjct: 429 MMDYAESITAERVRRV 444


>gi|83589722|ref|YP_429731.1| hypothetical protein Moth_0871 [Moorella thermoacetica ATCC 39073]
 gi|83572636|gb|ABC19188.1| conserved hypothetical protein [Moorella thermoacetica ATCC 39073]
          Length = 281

 Score = 40.0 bits (92), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 33/59 (55%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           K H   KP  +++ I+   TK G+++LDPF G G +   A    R+ +G E+   ++DI
Sbjct: 39  KKHGAMKPPEVMAEIIRFFTKKGELVLDPFAGVGGTLLGAALAGRASLGFELDPRWVDI 97


>gi|126656565|ref|ZP_01727826.1| hypothetical protein CY0110_22717 [Cyanothece sp. CCY0110]
 gi|126622251|gb|EAZ92958.1| hypothetical protein CY0110_22717 [Cyanothece sp. CCY0110]
          Length = 182

 Score = 40.0 bits (92), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)

Query: 9   INENQNSIF--EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV 65
           INEN   I   E + K+IKG+ + VL+ L  K  DLI+ DPPY       LY+P   L+
Sbjct: 76  INENWQKIANDEQEFKVIKGDILKVLKTLNMKKFDLIYFDPPY----QSGLYQPVLELI 130


>gi|330892394|gb|EGH25055.1| DNA methylase N-4/N-6 domain-containing protein [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 628

 Score = 40.0 bits (92), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 79/195 (40%), Gaps = 20/195 (10%)

Query: 23  IIKGN---SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           II+G+   S+ +L+   A  + +I  DPPYN      +Y  D+   D   D W      E
Sbjct: 75  IIEGDNFDSLRLLKATHAGKIHVILIDPPYNTGNKDWVYNDDYVKKD---DRWRHSKWLE 131

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF--WILNDIVWRKSNPM 137
               F    +   R +L P+G + V  +  N  R+  ML +  F    L   VW K+   
Sbjct: 132 ----FMYQRMTLARDLLTPDGVILVCINDENRARL-EMLMDEVFPGRRLGAFVW-KTRSG 185

Query: 138 PNFRGRRFQNAHE-TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI-PICSGSERL 195
            N    RF   HE  L++  P  K  G T ++   K  N D   R  W    +  G  R+
Sbjct: 186 SNDEQARFSVDHEYVLVYGLPDFKFNGETKDFSQYK--NPDKDPRGPWKTGDLGKGHTRI 243

Query: 196 RNKDGEKLHPTQKPE 210
              +    +P Q P+
Sbjct: 244 ERPNA--YYPIQNPK 256


>gi|167855189|ref|ZP_02477959.1| putative DNA modification methylase [Haemophilus parasuis 29755]
 gi|167853642|gb|EDS24886.1| putative DNA modification methylase [Haemophilus parasuis 29755]
          Length = 289

 Score = 40.0 bits (92), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           +KD  K HP       + +++   TK    +LDPF GSGT+      L R  IG ++  D
Sbjct: 44  DKDAMK-HPAPYLIKDIEKLIKLFTKQKMTVLDPFCGSGTTLLSCLNLGRKGIGFDLNND 102

Query: 257 YIDIATKRIASVQ 269
           Y ++A  RI  ++
Sbjct: 103 YRELALSRIKKIK 115


>gi|307317586|ref|ZP_07597025.1| DNA methylase N-4/N-6 domain protein [Sinorhizobium meliloti AK83]
 gi|306896744|gb|EFN27491.1| DNA methylase N-4/N-6 domain protein [Sinorhizobium meliloti AK83]
          Length = 270

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 7/47 (14%)

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           PG +ILDPF G    G VA KL RS++G       ID++ ++IA+ Q
Sbjct: 49  PGGLILDPFSGGSVRGIVASKLGRSYLG-------IDLSARQIAANQ 88


>gi|153806916|ref|ZP_01959584.1| hypothetical protein BACCAC_01192 [Bacteroides caccae ATCC 43185]
 gi|149131593|gb|EDM22799.1| hypothetical protein BACCAC_01192 [Bacteroides caccae ATCC 43185]
          Length = 250

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 85/234 (36%), Gaps = 37/234 (15%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           + +  L+K P    DL   DPPY +  +    +P+          + K S +   D  +R
Sbjct: 10  DRMDFLKKFPDNFFDLFIDDPPYGIGADNPSIKPNTVKQSNGNILYVKQSVYPKSDWDSR 69

Query: 87  A----WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
                +    +RV + N  +W +  ++  F  G             IVW K N   +   
Sbjct: 70  VPPPEYFDEVKRVSR-NQIIWGVNYFNYDFTGGR------------IVWDKLNGDTDQYD 116

Query: 143 RRF----QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
                   N    L++       +G     D  KA              I  G+++L  K
Sbjct: 117 CEIAYCSMNNRTDLVYCMWRGMIQGTYCGKDLSKAI-------------IQQGNKKLNEK 163

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
              ++HP QKP  L + +L     PG  I D   GS +S   A KLR  + G E
Sbjct: 164 ---RIHPCQKPVILYAWLLNQYANPGYKIGDAHMGSQSSRIAAYKLRFDYWGCE 214


>gi|210135686|ref|YP_002302125.1| type III R-M system methyltransferase [Helicobacter pylori P12]
 gi|210133654|gb|ACJ08645.1| type III R-M system methyltransferase [Helicobacter pylori P12]
          Length = 680

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
           +G++ + +   +K+    KP  L+SR++  ST  GDIILD F GSGT+ 
Sbjct: 416 NGTKEVNDLFNQKIFNNPKPLKLISRLIELSTNEGDIILDFFAGSGTTA 464


>gi|156741917|ref|YP_001432046.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156233245|gb|ABU58028.1| DNA methylase N-4/N-6 domain protein [Roseiflexus castenholzii DSM
           13941]
          Length = 375

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 4/73 (5%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           Q P  ++ R     TK GD +LD F GSGT+    ++L R+ IG+E++   ++ A + I+
Sbjct: 159 QIPYQMMRRY----TKKGDWVLDTFAGSGTTLIEGQRLGRNTIGVELQPQMVEHARRLIS 214

Query: 267 SVQPLGNIELTVL 279
           S     N+ + V+
Sbjct: 215 SEPNRYNVVIDVI 227


>gi|257074528|ref|YP_003162925.1| phage DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257048749|gb|ACV37934.1| phage DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 225

 Score = 39.7 bits (91), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 42/71 (59%), Gaps = 8/71 (11%)

Query: 4   KNSLAINENQNSIFEWKDK------IIKGNSISVLEKLPAKSVDLIFADPPY--NLQLNG 55
           + ++ I+ +++ I  W  +      ++ G++++ LE+    S +L+++DPPY    + NG
Sbjct: 42  RRNIGIDADRSVIERWHRERPTPCELVHGDAVAFLERFTFSSGELVYSDPPYLAETRRNG 101

Query: 56  QLYRPDHSLVD 66
           ++YR ++S  D
Sbjct: 102 KIYRHEYSDRD 112


>gi|291288948|ref|YP_003517451.1| hypothetical protein pKF94_036 [Klebsiella pneumoniae]
 gi|290792080|gb|ADD63406.1| hypothetical protein pKF94-036 [Klebsiella pneumoniae]
          Length = 62

 Score = 39.7 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
          + I GN I V+   P ++VDLI  DPPY   L G   R    +   VTD W
Sbjct: 3  RFILGNCIDVMRGFPDRAVDLIVTDPPY---LVGFKDRQGRQIAGDVTDEW 50


>gi|254672454|emb|CBA05865.1| Adenine specific DNA methylase Mod [Neisseria meningitidis
           alpha275]
          Length = 563

 Score = 39.7 bits (91), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 19/101 (18%)

Query: 23  IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA------------ 67
           +I+G+++ VL+ L      SV +I+ DPPYN   +G +Y+ D     A            
Sbjct: 40  LIRGDNLEVLKHLKNAYTNSVKMIYIDPPYNTGSDGFVYQDDRKFTPAELACLANIDEDE 99

Query: 68  ---VTDSWDKFS-SFEAYDAFTRAWLLACRRVLKPNGTLWV 104
              + D  DK S S  A+  F    L   R +LK +G +++
Sbjct: 100 AARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVIFI 140


>gi|172039169|ref|YP_001805670.1| CHP95-containing protein [Cyanothece sp. ATCC 51142]
 gi|171700623|gb|ACB53604.1| CHP95-containing protein [Cyanothece sp. ATCC 51142]
          Length = 182

 Score = 39.7 bits (91), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 4/44 (9%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV 65
           ++IKG+S+ VL+ L  K  DLI+ DPPY      +LY+P   L+
Sbjct: 91  QVIKGDSLKVLKTLDRKKFDLIYFDPPY----QSRLYQPVLELI 130


>gi|78045442|ref|YP_361692.1| putative site-specific DNA-methyltransferase [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|78033946|emb|CAJ19945.1| putative site-specific DNA-methyltransferase [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 407

 Score = 39.7 bits (91), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 36/73 (49%)

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           + G   H    P AL  +++   ++P D++ DPF G  T+G  A++  R +I  E+  D+
Sbjct: 331 EQGLAPHGAPMPLALADKLVRFLSRPDDLVADPFGGRLTTGKAAEQNGRRWICTELIADH 390

Query: 258 IDIATKRIASVQP 270
           +  A  R     P
Sbjct: 391 LHSALPRFPQAVP 403


>gi|223039764|ref|ZP_03610049.1| DNA methylase [Campylobacter rectus RM3267]
 gi|222878956|gb|EEF14052.1| DNA methylase [Campylobacter rectus RM3267]
          Length = 311

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           ++D + + P Q    ++ R L   +  GD++  PF G G+    + K+ R  IGIE+K  
Sbjct: 232 DEDEKHICPLQLD--VIERALQLWSNEGDVVFTPFLGIGSEVYQSLKMNRKGIGIELKNS 289

Query: 257 YIDIATK 263
           Y ++A K
Sbjct: 290 YFNVAAK 296


>gi|13540955|ref|NP_110643.1| adenine specific DNA methylase [Thermoplasma volcanium GSS1]
 gi|14324340|dbj|BAB59268.1| modification methylase [Thermoplasma volcanium GSS1]
          Length = 337

 Score = 39.7 bits (91), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 91/193 (47%), Gaps = 39/193 (20%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEK---------LPAK--SVDLIFADPPYNLQLNGQLYR 59
           EN N   E+ +++I G+++  ++          LP+    +DLI+ DPP++ + N   YR
Sbjct: 69  ENNN---EFLNRLIYGDNLLAMQAFLAGDPETGLPSMRGKIDLIYIDPPFDSKAN---YR 122

Query: 60  PDHSL----VDAVTDSWDKFSSFEAYDAFTRAW-------LLACRRVLKPNGTLWVIGSY 108
               L    V+ +    ++F+  + +   T+++       L+  + +L   G+++V   +
Sbjct: 123 TKIHLPTADVEQMPSVIEQFAYSDTWKDGTKSYLEMIVPRLVLMKELLSEKGSIYVHIDW 182

Query: 109 HNIFRIGTMLQNL----NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
           H    +  ++  +    NF  +N+IVW+K+N  P  + + F   H+ L     +P+   +
Sbjct: 183 HVGHYVKVIMDEIFGRENF--VNEIVWKKTNS-PKAQSKGFGTQHDVLYIYRKTPQ---F 236

Query: 165 TFNYDALKAANED 177
            FN    K  +ED
Sbjct: 237 IFN-QIKKEPDED 248


>gi|197248763|ref|YP_002149430.1| DNA methylase [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197212466|gb|ACH49863.1| DNA methylase [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
          Length = 322

 Score = 39.7 bits (91), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 35/66 (53%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K HP +  + +++  +   T   D+I DPF GS T+G  A+  +R ++ IE  + Y +
Sbjct: 247 GIKPHPARMNKGIVNFFIDFLTDENDLIFDPFGGSNTTGFCAELKKRRWLAIEADEKYAE 306

Query: 260 IATKRI 265
            +  R 
Sbjct: 307 QSKVRF 312


>gi|292654957|ref|YP_003534854.1| CTAG modification methylase [Haloferax volcanii DS2]
 gi|291370416|gb|ADE02643.1| CTAG modification methylase [Haloferax volcanii DS2]
          Length = 364

 Score = 39.7 bits (91), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 100/250 (40%), Gaps = 31/250 (12%)

Query: 35  LPAKSVDLIFADPPYNL-QLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
           L  +SV+L+   PPY + ++   L+      VDA  D+ D  ++FEA      A      
Sbjct: 17  LADESVNLVVTSPPYPMIEMWDDLFSARDDAVDAALDAGDGDAAFEAMHEQLDAVWDEVA 76

Query: 94  RVLKPNGTLWV-IGS-----------YHNIFRIGTMLQNLNFWILNDIVWRK-SNPMPNF 140
           RVL P G   V +G            Y N  R+ T L       L D VWRK +N +  F
Sbjct: 77  RVLAPGGVACVNVGDATRSLDGSFRQYPNHARVLTALGERGLTPLPDAVWRKPTNRLTKF 136

Query: 141 RGRRF--QNAHETLIW--------ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI-- 188
            G      NA+ TL            P     G    Y++     E    R+ W   +  
Sbjct: 137 MGSGTLPTNAYVTLEHEYVLVVRKGDPRSFPPGDDRRYESAFFWEE----RNRWFSDLWE 192

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
            SG+++ R   G +      P  L  R++   +  GD + DPF G+GT+   A    R  
Sbjct: 193 FSGTDQ-RLDSGARERSAAFPVELPLRLIRMYSVYGDTVFDPFVGTGTTTLAAMLAGRDS 251

Query: 249 IGIEMKQDYI 258
           +G ++  D +
Sbjct: 252 VGYDLDADLV 261


>gi|325130370|gb|EGC53136.1| putative type III restriction-modification system methyltransferase
           [Neisseria meningitidis OX99.30304]
          Length = 666

 Score = 39.7 bits (91), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 26/154 (16%)

Query: 23  IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA------------ 67
           +I+G+++ VL+ L      SV +I+ DPPYN   +G +Y+ D     A            
Sbjct: 139 LIRGDNLEVLKHLKNAYTNSVKMIYIDPPYNTGSDGFVYQDDRKFTPAELACLANIDEDE 198

Query: 68  ---VTDSWDKFS-SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-- 121
              + D  DK S S  A+  F    L   R +LK +G +++    +   ++  +   +  
Sbjct: 199 AARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVIFISIDDNEAAQLKLLCDEVFG 258

Query: 122 --NFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
             NF  + +++W+K    P    + F N H+ ++
Sbjct: 259 EGNF--VANVIWQKKY-SPQNDAKWFSNMHDYIL 289


>gi|308062782|gb|ADO04670.1| type III R-M system modification enzyme [Helicobacter pylori Cuz20]
          Length = 445

 Score = 39.7 bits (91), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 25/40 (62%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
           D  K+    KP  L+SR++  ST  GDIILD F GSGT+ 
Sbjct: 385 DNLKIFSYPKPTKLISRLIELSTNEGDIILDFFAGSGTTA 424


>gi|296314113|ref|ZP_06864054.1| type III restriction-modification system EcoP15I, modification
           subunit [Neisseria polysaccharea ATCC 43768]
 gi|296839263|gb|EFH23201.1| type III restriction-modification system EcoP15I, modification
           subunit [Neisseria polysaccharea ATCC 43768]
          Length = 566

 Score = 39.7 bits (91), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 19/101 (18%)

Query: 23  IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA------------ 67
           +I+G+++ VL+ L      SV +I+ DPPYN   +G +Y+ D     A            
Sbjct: 40  LIRGDNLEVLKHLKNAYTNSVKMIYIDPPYNTGSDGFVYQDDRKFTPAELARLANIDEDE 99

Query: 68  ---VTDSWDKFS-SFEAYDAFTRAWLLACRRVLKPNGTLWV 104
              + D  DK S S  A+  F    L   R +LK +G +++
Sbjct: 100 AARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVIFI 140


>gi|169832321|ref|YP_001718303.1| DNA methylase N-4/N-6 domain-containing protein [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169639165|gb|ACA60671.1| DNA methylase N-4/N-6 domain protein [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 371

 Score = 39.7 bits (91), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 17/67 (25%), Positives = 39/67 (58%)

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
           ++++  TK G++++DPF GSGT+    ++L R  +G+E+    +  A + + + +   N+
Sbjct: 159 QLMLRYTKKGELVVDPFLGSGTTLIECRRLGRHGLGVELNPKTLHKARELVEAEENRHNV 218

Query: 275 ELTVLTG 281
              ++ G
Sbjct: 219 ITRLIVG 225


>gi|207094033|ref|ZP_03241820.1| putative type III restriction enzyme M protein [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 37

 Score = 39.7 bits (91), Expect = 0.82,   Method: Composition-based stats.
 Identities = 18/34 (52%), Positives = 25/34 (73%)

Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           +ST   D++LD F  SGT+ AVA K++R +IGIE
Sbjct: 4   NSTNENDLVLDFFARSGTTCAVAHKMKRHYIGIE 37


>gi|57505937|ref|ZP_00371861.1| site-specific DNA-methyltransferase, putative [Campylobacter
           upsaliensis RM3195]
 gi|57015737|gb|EAL52527.1| site-specific DNA-methyltransferase, putative [Campylobacter
           upsaliensis RM3195]
          Length = 277

 Score = 39.7 bits (91), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 6/85 (7%)

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
           S W    C+      +KD  + HP       + +++   TK   ++LD F GSGT+   A
Sbjct: 26  SFWFSEKCAA-----DKDALR-HPAPFLIKDIEKLISLFTKEKMVVLDIFCGSGTTLLSA 79

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIA 266
             L+R  IG ++  +Y+D+A +R  
Sbjct: 80  YNLKRQGIGFDLNLEYLDLARERFV 104


>gi|313897109|ref|ZP_07830654.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. HGF2]
 gi|312958037|gb|EFR39660.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. HGF2]
          Length = 298

 Score = 39.7 bits (91), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           ++ R +   T  GD +  PF G G+    + K+ R  +GIE+K+ Y + A K
Sbjct: 226 VIERCIELWTNQGDTVFTPFLGIGSEAYQSIKMHRKAVGIELKESYFEQAVK 277


>gi|34451623|gb|AAQ72369.1| BseRI methylase fusion protein [Bacillus sp. R]
          Length = 1309

 Score = 39.7 bits (91), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
           +PT+     ++  + S TKPGD++LD F GSGT+G  A
Sbjct: 43  YPTKISPESIAVFIASHTKPGDVVLDTFGGSGTTGIAA 80


>gi|78044466|ref|YP_361025.1| putative DNA methylase [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996581|gb|ABB15480.1| putative DNA methylase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 329

 Score = 39.7 bits (91), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 31/48 (64%)

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           I++  +K G+++LD F GSGT+   AK L+R  IG+++  + + +  K
Sbjct: 130 IILRYSKEGEVVLDQFVGSGTTLVEAKLLKRKGIGVDINPEAVSLTLK 177


>gi|269122884|ref|YP_003305461.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Streptobacillus moniliformis DSM 12112]
 gi|268314210|gb|ACZ00584.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Streptobacillus moniliformis DSM 12112]
          Length = 369

 Score = 39.3 bits (90), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 20/151 (13%)

Query: 39  SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS---SFEAYDAFTRAWLLACRRV 95
           SVDL++ DPP+N   +        S + +  +    +S   +   Y  F R  L+  +++
Sbjct: 56  SVDLVYIDPPFNTNSDFYYNEDKTSTISSSKNDSLAYSDKMNLNEYLEFIRKRLILIKKL 115

Query: 96  LKPNGTLWVIGSYHNIFRIGTMLQNL--------NFWILNDIVWRKSNPMPNFRGRRFQN 147
           L   GT++    +H   ++G  ++ +        NF  +NDI   KSNP  NF+ + F N
Sbjct: 116 LSDRGTIY----FHIDCKVGPYIKLILDEIFGIKNF--VNDISRVKSNP-KNFKRKAFGN 168

Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDV 178
             + +     S K +   FN   +  + E++
Sbjct: 169 EKDVIYIY--SKKNQNNIFNNVTIALSEEEI 197


>gi|206599599|ref|YP_002242038.1| gp55 [Mycobacterium phage Brujita]
 gi|206282748|gb|ACI06269.1| gp55 [Mycobacterium phage Brujita]
 gi|302858490|gb|ADL71237.1| gp55 [Mycobacterium phage island3]
          Length = 216

 Score = 39.3 bits (90), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 27/43 (62%)

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           PG  + DPF GSG++   A+ + R  IG+E ++ Y +I  +R+
Sbjct: 163 PGGAVADPFAGSGSTLLAARNVGRKAIGVEYEERYCEIIARRL 205


>gi|15669639|ref|NP_248452.1| type II R/M system modification methyltransferase
           [Methanocaldococcus jannaschii DSM 2661]
 gi|12229861|sp|Q58843|MTM2_METJA RecName: Full=Modification methylase MjaII; Short=M.MjaII; AltName:
           Full=N-4 cytosine-specific methyltransferase MjaII
 gi|1592093|gb|AAB99457.1| modification methylase, type II R/M system [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 530

 Score = 39.3 bits (90), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 4/116 (3%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP--EALLSRILVSSTKPGD 225
           ++  K   E +  + DW +     SE+ R K    +HP +      L+   L      GD
Sbjct: 72  FEKRKEWEEKLGFKLDWDLAFDLLSEKERTKHVHGIHPYKGKFIPQLVEYFLKRHFNVGD 131

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA--SVQPLGNIELTVL 279
           II+DPF GSGT+     ++  + IGI++      IA  ++    +Q L  I L +L
Sbjct: 132 IIIDPFMGSGTTLVQCMEMGINSIGIDISPFNCLIAEVKLQKYDIQKLKKILLDML 187


>gi|207093010|ref|ZP_03240797.1| type II adenine methyltransferase [Helicobacter pylori
          HPKX_438_AG0C1]
          Length = 92

 Score = 39.3 bits (90), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 5/85 (5%)

Query: 16 IFEWKDKII---KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
          IF+ +D++    +G+   VL +      DLIFADPPY L  +G L      +V      W
Sbjct: 10 IFKSQDQLFTLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDW 67

Query: 73 DKFSSFEAYDAFTRAWLLACRRVLK 97
          DK +     D F   W+   ++ LK
Sbjct: 68 DKENGINGIDEFNYQWINNAKKALK 92


>gi|126348302|emb|CAJ90023.1| putative ribosomal RNA small subunit methyltransferase
           [Streptomyces ambofaciens ATCC 23877]
          Length = 383

 Score = 39.3 bits (90), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 25/78 (32%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           LE +P  SVDL+  +PP++                         S     DA  R     
Sbjct: 300 LEGVPDGSVDLVLNNPPFH-------------------------SHQATTDATARRMFAG 334

Query: 92  CRRVLKPNGTLWVIGSYH 109
            RR L+P G LWV+G+ H
Sbjct: 335 ARRALRPGGELWVVGNRH 352


>gi|121634979|ref|YP_975224.1| pseudogene (putative type III restriction-modification system
           modification protein) [Neisseria meningitidis FAM18]
 gi|120866685|emb|CAM10437.1| pseudogene (putative type III restriction-modification system
           modification protein) [Neisseria meningitidis FAM18]
          Length = 658

 Score = 39.3 bits (90), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 19/101 (18%)

Query: 23  IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA------------ 67
           +I+G+++ VL+ L      SV +I+ DPPYN   +G +Y+ D     A            
Sbjct: 135 LIRGDNLEVLKHLKNAYTNSVKMIYIDPPYNTGSDGFVYQDDRKFTPAELACLANIDEDE 194

Query: 68  ---VTDSWDKFS-SFEAYDAFTRAWLLACRRVLKPNGTLWV 104
              + D  DK S S  A+  F    L   R +LK +G +++
Sbjct: 195 AARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVIFI 235


>gi|209547699|ref|YP_002279616.1| DNA methylase protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209533455|gb|ACI53390.1| putative DNA methylase protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 217

 Score = 39.3 bits (90), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 32/63 (50%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           P AL+S +L   TK GD + DPF G GT+  V ++  R   G E  +   +   +RI + 
Sbjct: 29  PGALVSALLDRFTKSGDAVFDPFVGLGTTFFVCEQRGRIPYGTEADRQRYEWVKQRITTK 88

Query: 269 QPL 271
             L
Sbjct: 89  HHL 91


>gi|296491995|ref|YP_003662464.1| putative DNA methyltransferase [Xenorhabdus nematophila ATCC 19061]
 gi|289176884|emb|CBJ93055.1| putative DNA methyltransferase [Xenorhabdus nematophila ATCC 19061]
          Length = 434

 Score = 39.3 bits (90), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 34/65 (52%)

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           R+  + G   HP   P  +    +   T+ GD+I+DPF GS  SG  A++  R +I  ++
Sbjct: 340 RIAKELGLPPHPAMFPTDIPEMAIRFLTEEGDLIVDPFSGSNKSGLAAERNNRRWIACDI 399

Query: 254 KQDYI 258
             +YI
Sbjct: 400 ILEYI 404


>gi|256819717|ref|YP_003140996.1| DNA methylase N-4/N-6 domain-containing protein [Capnocytophaga
           ochracea DSM 7271]
 gi|256581300|gb|ACU92435.1| DNA methylase N-4/N-6 domain protein [Capnocytophaga ochracea DSM
           7271]
          Length = 753

 Score = 39.3 bits (90), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 10/120 (8%)

Query: 154 WASPS-PKAKGYTFNYDALKAANEDVQMRSDWL----IPICSGSERLRNKDGEKLHPTQK 208
           WASP+    KG   + D L    ED ++ + W       + +G +   +   EK H    
Sbjct: 629 WASPTWNVEKG---DIDHLHEVMEDYKVNT-WFDIKRTDVLNGKKEATDLGDEK-HIAPL 683

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
             +++ R +   +  G+ +  PF G G+    A  L R  IGIE+K  Y + A K I  V
Sbjct: 684 QLSVIKRCVQMWSNKGETVFTPFLGIGSEIYEAVTLERYGIGIELKDKYFETAVKNINMV 743


>gi|224438797|ref|ZP_03659652.1| putative methyltransferase cytosine (N4) specific (C1-like) protein
           [Helicobacter cinaedi CCUG 18818]
 gi|313145139|ref|ZP_07807332.1| DNA methyltransferase C1 [Helicobacter cinaedi CCUG 18818]
 gi|313130170|gb|EFR47787.1| DNA methyltransferase C1 [Helicobacter cinaedi CCUG 18818]
          Length = 359

 Score = 39.3 bits (90), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 25/33 (75%)

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           +K GDI+LDPF GSGT+   ++ L+R+ IG ++
Sbjct: 35  SKQGDIVLDPFCGSGTTLLASRILKRNAIGFDI 67


>gi|85717470|ref|ZP_01048418.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
           Nb-311A]
 gi|85695716|gb|EAQ33626.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
           Nb-311A]
          Length = 432

 Score = 39.3 bits (90), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 102/242 (42%), Gaps = 24/242 (9%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
           +V   +  +   ++F DPPYN++++G +       + ++       +S E  +     +L
Sbjct: 182 TVAALMGPEQAQMVFTDPPYNVRIDGNV-----GGLGSIRHREFAMASGEMSEPEFTGFL 236

Query: 90  LACRRVLKPNGTLWVIGSYHNIF----RIGTMLQ---NLNFWILNDIVWRKSNPMPNFRG 142
            A    L  +    + GS H I      +  ML+    +   + N IVW K N      G
Sbjct: 237 KASFGNLTRHS---IDGSIHYICMDWRHMAEMLKAGDGIYTELKNLIVWAKDN---GGMG 290

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
             +++ HE LI+A  +  A  +  N+  L    +  + R++        + +    D   
Sbjct: 291 TFYRSRHE-LIFAFKNGTAPHH--NHFEL---GQHGRYRTNVWEYRGVNTMKAGRLDELA 344

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           LHPT KP A+++  +   +  G I+LD F GSG++   A K  R     E    Y D   
Sbjct: 345 LHPTVKPVAMIADAIKDVSSRGGIVLDLFGGSGSTLIAAHKTGRRACICEYDPIYCDRII 404

Query: 263 KR 264
           +R
Sbjct: 405 QR 406


>gi|237750644|ref|ZP_04581124.1| DNA methyltransferase C1 [Helicobacter bilis ATCC 43879]
 gi|229373734|gb|EEO24125.1| DNA methyltransferase C1 [Helicobacter bilis ATCC 43879]
          Length = 359

 Score = 39.3 bits (90), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 25/33 (75%)

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           +K GDI+LDPF GSGT+   ++ L+R+ IG ++
Sbjct: 35  SKQGDIVLDPFCGSGTTLLASRILKRNAIGFDI 67


>gi|325208226|gb|ADZ03678.1| type III restriction-modification system enzyme mod [Neisseria
           meningitidis NZ-05/33]
          Length = 667

 Score = 39.3 bits (90), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 19/101 (18%)

Query: 23  IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA------------ 67
           +I+G+++ VL+ L      SV +I+ DPPYN   +G +Y+ D     A            
Sbjct: 144 LIRGDNLEVLKHLKNAYTNSVKMIYIDPPYNTGSDGFVYQDDRKFTPAELACLANIDEDE 203

Query: 68  ---VTDSWDKFS-SFEAYDAFTRAWLLACRRVLKPNGTLWV 104
              + D  DK S S  A+  F    L   R +LK +G +++
Sbjct: 204 AARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVIFI 244


>gi|261416885|ref|YP_003250568.1| Site-specific DNA-methyltransferase (adenine-specific) [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261373341|gb|ACX76086.1| Site-specific DNA-methyltransferase (adenine-specific) [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302327028|gb|ADL26229.1| putative type III restriction-modification system, Mod subunit
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 520

 Score = 39.3 bits (90), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 8/85 (9%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------ 244
             E+L+   G+ +  T K   L+  +LV +T    IILD F GSGT+      L      
Sbjct: 305 AKEQLKRTLGKNVFDTPKSIKLIEMLLVLATDKSSIILDSFAGSGTTAHAVLNLNKQDGG 364

Query: 245 RRSFIGIEMKQDYID-IATKRIASV 268
            R FI +EM +DY + I  +R+  V
Sbjct: 365 NRKFILVEM-EDYAETITAERVRRV 388


>gi|294676500|ref|YP_003577115.1| cytosine-N(4)-specific DNA-methyltransferase [Rhodobacter
           capsulatus SB 1003]
 gi|294475320|gb|ADE84708.1| site-specific DNA-methyltransferase (cytosine-N(4)-specific)
           [Rhodobacter capsulatus SB 1003]
          Length = 324

 Score = 39.3 bits (90), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 23/36 (63%)

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           PG  +LDPF G    G VA +L R ++GIE++ + +
Sbjct: 102 PGGTVLDPFAGGSVRGIVAARLGRPYVGIELRAEQV 137


>gi|124267569|ref|YP_001021573.1| DNA modification methylase-like protein [Methylibium petroleiphilum
           PM1]
 gi|124260344|gb|ABM95338.1| DNA modification methylase-like protein [Methylibium petroleiphilum
           PM1]
          Length = 307

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 33/66 (50%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP   P  +  R+    +  G+ +LDPF G+GT+   A  L R  I ++   DY +I  K
Sbjct: 38  HPAVFPLEIPHRLTKLFSFYGETVLDPFAGTGTTARAAIPLGRRAICVDQNADYTEIIKK 97

Query: 264 RIASVQ 269
             A ++
Sbjct: 98  DCAKLR 103


>gi|261414674|ref|YP_003248357.1| Site-specific DNA-methyltransferase (adenine-specific) [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261371130|gb|ACX73875.1| Site-specific DNA-methyltransferase (adenine-specific) [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 592

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 8/68 (11%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYID-I 260
           KP +L+  IL  +T    IILD F GSGT+      L       R FI +EM +DY D I
Sbjct: 337 KPISLIEEILEIATDKSSIILDSFAGSGTTAHAVLNLNKQDGGNRKFILVEM-EDYADKI 395

Query: 261 ATKRIASV 268
             +R+  V
Sbjct: 396 TAERVRRV 403


>gi|160943496|ref|ZP_02090729.1| hypothetical protein FAEPRAM212_00987 [Faecalibacterium prausnitzii
           M21/2]
 gi|257437675|ref|ZP_05613430.1| adenine specific DNA methylase [Faecalibacterium prausnitzii
           A2-165]
 gi|158445175|gb|EDP22178.1| hypothetical protein FAEPRAM212_00987 [Faecalibacterium prausnitzii
           M21/2]
 gi|257199982|gb|EEU98266.1| adenine specific DNA methylase [Faecalibacterium prausnitzii
           A2-165]
          Length = 587

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 10/89 (11%)

Query: 189 CSGSERLRN--KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL-- 244
            +G++ L+N   +  K     K  AL+  ++ + TK  DIILD F GSGT+      +  
Sbjct: 368 VNGTQTLKNIFPESPKTFDYPKSVALIESVVQAITKDADIILDSFAGSGTTAHAVLNMNK 427

Query: 245 ----RRSFIGIEMKQDYID-IATKRIASV 268
                R FI +EM  DY D I  +R+  V
Sbjct: 428 ADGGHRKFILVEM-MDYADSITAERVKRV 455


>gi|169351042|ref|ZP_02867980.1| hypothetical protein CLOSPI_01820 [Clostridium spiroforme DSM 1552]
 gi|169292104|gb|EDS74237.1| hypothetical protein CLOSPI_01820 [Clostridium spiroforme DSM 1552]
          Length = 379

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
           K  +I++D + G GT G VA K  +  IG+E+ QD I  A    A +  +GNI   
Sbjct: 230 KGDEIVIDAYCGIGTIGMVAAKKAKEVIGVELNQDAIKDANNN-ARMNKIGNIRFV 284


>gi|239616522|ref|YP_002939844.1| DNA methylase N-4/N-6 [Kosmotoga olearia TBF 19.5.1]
 gi|239505353|gb|ACR78840.1| DNA methylase N-4/N-6 [Kosmotoga olearia TBF 19.5.1]
          Length = 89

 Score = 39.3 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 12/75 (16%)

Query: 23 IIKGNSISVL-EKLPAKSVDLIFADPPYNLQ------LNGQLYRPDHSLVDAVTDSWDKF 75
          I KG+ I V+ E +  +++DLI+ADPPYNL       +N +   P + + +   D+WD  
Sbjct: 6  IYKGDCIKVMREHIKDENIDLIYADPPYNLSGKSLNLINNKTGGPFYKM-NEDWDTWD-- 62

Query: 76 SSFEAYDAFTRAWLL 90
            +  Y  FT  W +
Sbjct: 63 --YNEYVEFTENWFV 75


>gi|189218340|ref|YP_001938982.1| DNA modification methylase [Methylacidiphilum infernorum V4]
 gi|189185198|gb|ACD82383.1| DNA modification methylase [Methylacidiphilum infernorum V4]
          Length = 964

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 12/97 (12%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY--NLQLNGQLYRPD-------HSLVDAVTDSWD 73
            +   S + L ++P  SVD IF DPP+  N+  + Q Y  +       + + +A+T+   
Sbjct: 520 FVSTQSATQLFQIPDNSVDFIFTDPPFGGNINYSEQNYLAEWWLRVFTNKINEAITNPAQ 579

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
           K   FE     TR +     RVLKP    W++  +HN
Sbjct: 580 KKGLFEYQQIMTRCF-CEYYRVLKPGR--WMVMVFHN 613


>gi|296243018|ref|YP_003650505.1| putative RNA methylase [Thermosphaera aggregans DSM 11486]
 gi|296095602|gb|ADG91553.1| putative RNA methylase [Thermosphaera aggregans DSM 11486]
          Length = 311

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           P Q P AL+    +  T  GD++LDP  GSGT+   A  L R+ IG+++    + +   R
Sbjct: 73  PPQIPRALI----LKYTSEGDVVLDPMVGSGTTCIEAVLLGRNCIGVDLNYHAVMLTHHR 128

Query: 265 I 265
           +
Sbjct: 129 L 129


>gi|317178225|dbj|BAJ56014.1| Type III DNA modification enzyme [Helicobacter pylori F16]
          Length = 678

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 30/49 (61%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
           +G++ L +   +K+    KP  L+SR++  ST   DIILD F GSGT+ 
Sbjct: 413 NGTKELNDLFNQKVFNNPKPTKLISRLIELSTNESDIILDFFAGSGTTA 461


>gi|257075872|ref|ZP_05570233.1| DNA methylase N-4/N-6 [Ferroplasma acidarmanus fer1]
          Length = 286

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 27/38 (71%)

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           I++  +K  D+ILDPF GSGT+   AK L+R  IG+++
Sbjct: 81  IILRYSKENDLILDPFSGSGTTLIEAKLLKRHGIGMDI 118


>gi|254671412|emb|CBA08903.1| Adenine specific DNA methylase Mod [Neisseria meningitidis
           alpha153]
          Length = 487

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 19/101 (18%)

Query: 23  IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA------------ 67
           +I+G+++ VL+ L      SV +I+ DPPYN   +G +Y+ D     A            
Sbjct: 40  LIRGDNLEVLKHLKNAYTNSVKMIYIDPPYNTGSDGFVYQDDRKFTPAELALLANIDEDE 99

Query: 68  ---VTDSWDKFS-SFEAYDAFTRAWLLACRRVLKPNGTLWV 104
              + D  DK S S  A+  F    L   R +LK +G +++
Sbjct: 100 AARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVIFI 140


>gi|297565032|ref|YP_003684004.1| adenine-specific DNA-methyltransferase [Meiothermus silvanus DSM
           9946]
 gi|296849481|gb|ADH62496.1| Site-specific DNA-methyltransferase (adenine-specific) [Meiothermus
           silvanus DSM 9946]
          Length = 629

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 63/159 (39%), Gaps = 33/159 (20%)

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW-----ASPSPKAKGYTFNYDALKA--- 173
             W     VWR S      R R  QN  E  +W      + +P+ K Y      + A   
Sbjct: 313 EIWPSRTAVWRYS------RERHEQNVREGRVWWGLNQENETPRYKRYLSEVAGVVADTW 366

Query: 174 -ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKP--GDIILDP 230
             + DV    +      S    L  +D +    T KP  LL R+L  ST+P  GDI+LD 
Sbjct: 367 WEHTDVGHTDEAKKEFKS----LFGEDADAFD-TPKPVRLLKRLLQLSTEPDAGDIVLDF 421

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           F GSGT G            +EM Q+  D   +R   VQ
Sbjct: 422 FAGSGTLGQAV---------LEMNQE--DGGNRRFVLVQ 449


>gi|241589847|ref|YP_002979872.1| DNA methylase N-4/N-6 domain protein [Ralstonia pickettii 12D]
 gi|240868559|gb|ACS66218.1| DNA methylase N-4/N-6 domain protein [Ralstonia pickettii 12D]
          Length = 412

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 11/77 (14%)

Query: 189 CSGSERLRNKDGE---KLH----PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
           C+ +   R +  E    LH    PT+ PE  +  +    T+PGD+++DPF G+G +   A
Sbjct: 314 CADTRAYRRRAAELGLPLHGAMMPTRIPEFFIKFL----TEPGDLVVDPFGGTGKTALAA 369

Query: 242 KKLRRSFIGIEMKQDYI 258
           ++L R +   E    YI
Sbjct: 370 ERLGRRWAMAEKMLQYI 386


>gi|327188048|gb|EGE55276.1| DNA methylase N-4/N-6 domain-containing protein [Rhizobium etli
           CNPAF512]
          Length = 1045

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 30/132 (22%), Positives = 60/132 (45%), Gaps = 27/132 (20%)

Query: 19  WKDKIIKGNSISVLEKLPAKS-----VDLIFADPPYNLQLNGQLYRP------------- 60
           W ++++ G+S+ V+  L AK      V +I+ DPPY ++  G  ++P             
Sbjct: 274 WSNRLVAGDSLLVMNSLLAKESMRGKVQMIYIDPPYGIKY-GSNFQPFTNKRKLSDSDKD 332

Query: 61  -----DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
                +  ++ A  D+W+      +Y  + R  L+  R +L  +G ++V  S  N+  + 
Sbjct: 333 EDLNQEPEMIKAFRDTWE--LGIHSYLTYLRDRLILARELLNDSGAVFVQISDENVHLVR 390

Query: 116 TMLQNLNFWILN 127
            +L  + F + N
Sbjct: 391 GVLDEI-FGVTN 401



 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 34/57 (59%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           ++ R ++ +T PGD++LD   GSGT+   A+K  R +I  +  +  I +A +R+ + 
Sbjct: 545 IVERCILMTTDPGDLVLDITCGSGTTAFTAEKWGRRWITCDTSRIAITLAKQRLMTA 601


>gi|223038997|ref|ZP_03609288.1| DNA methylase N-4/N-6 domain protein [Campylobacter rectus RM3267]
 gi|222879636|gb|EEF14726.1| DNA methylase N-4/N-6 domain protein [Campylobacter rectus RM3267]
          Length = 260

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 5/79 (6%)

Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
           N D+   S W I     S + +N       P Q P  LL R     TK G+ + +PF GS
Sbjct: 13  NCDINTDSLWFIAERDKSGKHKNIYHGNFIP-QIPNQLLRRY----TKRGEFVFEPFMGS 67

Query: 235 GTSGAVAKKLRRSFIGIEM 253
           GT+    + L R +IG ++
Sbjct: 68  GTTLFECENLDRKYIGFDI 86


>gi|258624188|ref|ZP_05719138.1| DNA methylase [Vibrio mimicus VM603]
 gi|258583619|gb|EEW08418.1| DNA methylase [Vibrio mimicus VM603]
          Length = 414

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 34/65 (52%)

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           R+  + G   HP   P  +    +   T+ GD+++DPF GS  SG  A++  R +I  ++
Sbjct: 322 RMARELGLPPHPAMFPTDIPEMAIRFLTEEGDLVVDPFSGSNKSGLAAERNNRRWIACDI 381

Query: 254 KQDYI 258
             +YI
Sbjct: 382 ILEYI 386


>gi|218960512|ref|YP_001740287.1| DNA adenine modification methylase [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729169|emb|CAO80080.1| DNA adenine modification methylase [Candidatus Cloacamonas
           acidaminovorans]
          Length = 382

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 32/51 (62%)

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           ++++  TK  D +LD F GSGT+   +K+L R+ IGIE+  +  + A K I
Sbjct: 169 QMMLRYTKKDDWVLDTFLGSGTTLIESKRLGRNGIGIELNAEVANKAEKLI 219


>gi|161526058|ref|YP_001581070.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Burkholderia multivorans ATCC 17616]
 gi|189349227|ref|YP_001944855.1| HemK protein [Burkholderia multivorans ATCC 17616]
 gi|160343487|gb|ABX16573.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Burkholderia multivorans ATCC 17616]
 gi|189333249|dbj|BAG42319.1| HemK protein [Burkholderia multivorans ATCC 17616]
          Length = 280

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 9/90 (10%)

Query: 36  PAKSVDLIFADPPYNLQLNGQLYRPDHSLV--DAVTDSWDKFSSFEAYDAFTRAWLLACR 93
           PA + D I ++PPY  Q +  L + D       A+TD  D  S+        R  +   R
Sbjct: 176 PALAFDAIVSNPPYIAQHDPHLSQGDLRFEPRGALTDDADGLSAI-------RTIVAGAR 228

Query: 94  RVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
             LKP GTLW+   Y     +  +L +  F
Sbjct: 229 AHLKPGGTLWIEHGYDQAEAVRALLASHGF 258


>gi|324007550|gb|EGB76769.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 57-2]
          Length = 415

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 34/65 (52%)

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           R+  + G   HP   P  +    +   T+ GD+++DPF GS  SG  A++  R +I  ++
Sbjct: 323 RIARELGLPPHPAMFPTDIPEMAIRFLTEEGDLVVDPFSGSNKSGLAAERNNRRWIACDI 382

Query: 254 KQDYI 258
             +YI
Sbjct: 383 ILEYI 387


>gi|125974022|ref|YP_001037932.1| DNA methylase N-4/N-6 [Clostridium thermocellum ATCC 27405]
 gi|281418176|ref|ZP_06249196.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum
           JW20]
 gi|125714247|gb|ABN52739.1| DNA methylase N-4/N-6 [Clostridium thermocellum ATCC 27405]
 gi|281409578|gb|EFB39836.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum
           JW20]
          Length = 329

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA-SVQPLGNI 274
           +++  +K G+ +LD F GSGT+   AK L+R  IG+++  + +++  + I    +  G  
Sbjct: 130 VILRYSKEGETVLDQFVGSGTTLVEAKLLKRKGIGVDINPEAVNLTCRNINFEKEDCGET 189

Query: 275 ELTV 278
           E+ V
Sbjct: 190 EVHV 193


>gi|313900238|ref|ZP_07833734.1| conserved hypothetical protein [Clostridium sp. HGF2]
 gi|312954947|gb|EFR36619.1| conserved hypothetical protein [Clostridium sp. HGF2]
          Length = 238

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 32/50 (64%)

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           +++  T+  D++LD F GSGT+   AK L R+ IGI++ +  ++I   R+
Sbjct: 39  LILKYTEQKDLVLDCFVGSGTTLIEAKLLDRNAIGIDINKKALEITRNRL 88


>gi|221201721|ref|ZP_03574759.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Burkholderia multivorans CGD2M]
 gi|221207204|ref|ZP_03580214.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Burkholderia multivorans CGD2]
 gi|221172792|gb|EEE05229.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Burkholderia multivorans CGD2]
 gi|221178537|gb|EEE10946.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Burkholderia multivorans CGD2M]
          Length = 280

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 9/90 (10%)

Query: 36  PAKSVDLIFADPPYNLQLNGQLYRPDHSLV--DAVTDSWDKFSSFEAYDAFTRAWLLACR 93
           PA + D I ++PPY  Q +  L + D       A+TD  D  S+        R  +   R
Sbjct: 176 PALAFDAIVSNPPYIAQHDPHLSQGDLRFEPRGALTDDADGLSAI-------RTIVAGAR 228

Query: 94  RVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
             LKP GTLW+   Y     +  +L +  F
Sbjct: 229 AHLKPGGTLWIEHGYDQAEAVRALLASHGF 258


>gi|205374887|ref|ZP_03227679.1| DNA methylase N-4/N-6 domain-containing protein [Bacillus
           coahuilensis m4-4]
          Length = 151

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 5/98 (5%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++KG+ + VL+ +     DLI  DPPY +  NG++ +  +  +D   + WD     +   
Sbjct: 5   LLKGDCLQVLKDIDNNIADLIIVDPPYGVLTNGKVVKKGNYEIDDYFE-WDMLEDLQ--- 60

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
            FT  W        K +  +++  S     R+G  + N
Sbjct: 61  QFTTEWFEKLYNKAKEDSFIYIFWS-QKYMRMGYEIFN 97


>gi|227485749|ref|ZP_03916065.1| DNA methylase [Anaerococcus lactolyticus ATCC 51172]
 gi|227236304|gb|EEI86319.1| DNA methylase [Anaerococcus lactolyticus ATCC 51172]
          Length = 248

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 3/64 (4%)

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI---ASVQPLG 272
           I++  ++ GD++LD F G GT+   AK L R+ IG+++    ++   ++I    + +PLG
Sbjct: 47  IILRYSEEGDLVLDQFAGGGTTLVEAKLLNRNIIGLDVNDVALNRCKEKIDFNLTDRPLG 106

Query: 273 NIEL 276
            ++L
Sbjct: 107 KVKL 110


>gi|42541077|gb|AAS19435.1| M.RsaI methyltransferase [Rhodobacter sphaeroides]
          Length = 409

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 4/45 (8%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
            Q PE  + R+    TKPGD++ DPF G GT+   A  + R   G
Sbjct: 70  AQLPEFFIGRL----TKPGDVVFDPFMGRGTTPVQAALMERQAFG 110


>gi|309796420|ref|ZP_07690828.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 145-7]
 gi|308119925|gb|EFO57187.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 145-7]
          Length = 415

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 34/65 (52%)

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           R+  + G   HP   P  +    +   T+ GD+++DPF GS  SG  A++  R +I  ++
Sbjct: 323 RIARELGLPPHPAMFPTDIPEMAIRFLTEEGDLVVDPFSGSNKSGLAAERNNRRWIACDI 382

Query: 254 KQDYI 258
             +YI
Sbjct: 383 ILEYI 387


>gi|134044472|ref|YP_001101743.1| DNA methylase [Yersinia ruckeri]
 gi|133904835|gb|ABO40852.1| DNA methylase [Yersinia ruckeri]
          Length = 414

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 34/65 (52%)

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           R+  + G   HP   P  +    +   T+ GD+++DPF GS  SG  A++  R +I  ++
Sbjct: 322 RIARELGLPPHPAMFPTDIPEMAIRFLTEEGDLVVDPFSGSNKSGLAAERNNRRWIACDI 381

Query: 254 KQDYI 258
             +YI
Sbjct: 382 ILEYI 386


>gi|209883964|ref|YP_002287821.1| ParB domain protein nuclease [Oligotropha carboxidovorans OM5]
 gi|209872160|gb|ACI91956.1| ParB domain protein nuclease [Oligotropha carboxidovorans OM5]
          Length = 455

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 7/85 (8%)

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
           + S WL+P  +  ER         HPT KP       +      G +  +PF GSG+   
Sbjct: 325 LPSTWLLPSFAKDER-------PDHPTPKPLDAFGIPMRQHVTRGGLCYEPFCGSGSQIM 377

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKR 264
             +   R    +E+   Y+D+A +R
Sbjct: 378 AGEANDRRVYAMEISPAYVDVAIER 402


>gi|298246346|ref|ZP_06970152.1| DNA methylase N-4/N-6 domain protein [Ktedonobacter racemifer DSM
           44963]
 gi|297553827|gb|EFH87692.1| DNA methylase N-4/N-6 domain protein [Ktedonobacter racemifer DSM
           44963]
          Length = 277

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS--GAVAKKLRRSFIGIEMKQDYID 259
           K H   KP  L+ +++   TKPG  +LDPF G G +  GA      R  +GIE+   +++
Sbjct: 42  KAHGANKPPQLMRQLIEFFTKPGARVLDPFAGVGGTLIGASICAKPREALGIEINPRWVE 101

Query: 260 IATKRIASVQ 269
           I  + +   Q
Sbjct: 102 IYQRVLEENQ 111


>gi|256004638|ref|ZP_05429615.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum DSM
           2360]
 gi|255991373|gb|EEU01478.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum DSM
           2360]
 gi|316941270|gb|ADU75304.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum DSM
           1313]
          Length = 329

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA-SVQPLGNI 274
           +++  +K G+ +LD F GSGT+   AK L+R  IG+++  + +++  + I    +  G  
Sbjct: 130 VILRYSKEGETVLDQFVGSGTTLVEAKLLKRKGIGVDINPEAVNLTCRNINFEKEDCGET 189

Query: 275 ELTV 278
           E+ V
Sbjct: 190 EVHV 193


>gi|239932791|ref|ZP_04689744.1| hypothetical protein SghaA1_31498 [Streptomyces ghanaensis ATCC
           14672]
          Length = 380

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 25/78 (32%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           L  +PA SVDL+  +PP++                A TD+        A+  FT A    
Sbjct: 294 LAGVPAGSVDLVLNNPPFHSH-------------QATTDA-------TAWRMFTGA---- 329

Query: 92  CRRVLKPNGTLWVIGSYH 109
            RR L+P G LWVIG+ H
Sbjct: 330 -RRALRPGGELWVIGNRH 346


>gi|126724447|ref|ZP_01740290.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Rhodobacterales bacterium HTCC2150]
 gi|126705611|gb|EBA04701.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Rhodobacterales bacterium HTCC2150]
          Length = 662

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 6/51 (11%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS------FIGIEMKQD 256
           LL R +   TK  DI+LD FFGSGT G    ++ R       FIGI++ ++
Sbjct: 429 LLKRCIYYGTKKDDIVLDFFFGSGTLGQALFEVERENPRGRKFIGIQLPEE 479


>gi|51892572|ref|YP_075263.1| hypothetical protein STH1434 [Symbiobacterium thermophilum IAM
           14863]
 gi|51856261|dbj|BAD40419.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 297

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 10/97 (10%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           H  QKP  L + ++ + TK G+ +LDPF G G +   A    R  +G+E+   +I I  +
Sbjct: 62  HGGQKPPELCADLIRTFTKSGERVLDPFMGVGGTLIGATISGRRAVGVEINPRWIAI-YR 120

Query: 264 RIASVQPLGNIEL------TVLTGKRTEPRVAFNLLV 294
            + S++ L   E       TVL G   E   +F+L++
Sbjct: 121 EVCSLEGLPEQEAVCGDSRTVLAGFEPE---SFDLVL 154


>gi|320458356|dbj|BAJ68977.1| hypothetical phage protein [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 392

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 29/56 (51%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           LHPT KP  L+  ++   T P  ++L+PF GSG +    +      +  EM  DY+
Sbjct: 296 LHPTVKPLELMRWLVRLVTPPDGLVLEPFAGSGATLEACRIEDVRCVAAEMDSDYV 351


>gi|7465375|pir||B64710 site-specific DNA-methyltransferase (EC 2.1.1.-) HP1522 -
           Helicobacter pylori (strain 26695)
          Length = 627

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 25/42 (59%)

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
           N   E +    KP  L++R++  ST  GDIILD F GSGT+ 
Sbjct: 385 NSSDESIFSNPKPTKLINRLIELSTNEGDIILDFFAGSGTTA 426


>gi|291441144|ref|ZP_06580534.1| ribosomal RNA small subunit methyltransferase [Streptomyces
           ghanaensis ATCC 14672]
 gi|291344039|gb|EFE70995.1| ribosomal RNA small subunit methyltransferase [Streptomyces
           ghanaensis ATCC 14672]
          Length = 384

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 25/78 (32%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           L  +PA SVDL+  +PP++                A TD+        A+  FT A    
Sbjct: 298 LAGVPAGSVDLVLNNPPFHSH-------------QATTDA-------TAWRMFTGA---- 333

Query: 92  CRRVLKPNGTLWVIGSYH 109
            RR L+P G LWVIG+ H
Sbjct: 334 -RRALRPGGELWVIGNRH 350


>gi|323704525|ref|ZP_08116103.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535987|gb|EGB25760.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 854

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           + T+ P   + R ++  TKPGDI+ D F G+G +G  A+
Sbjct: 83  YHTKVPHKAIMRYILHYTKPGDIVFDGFCGTGMTGVAAQ 121


>gi|110003969|emb|CAK98309.1| hypothetical protein n-6 adenine-specific dna methylases signature
           ps00092 [Spiroplasma citri]
          Length = 195

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 18/161 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY--------NLQLN-GQLYRPDHSLVDAVTDSW 72
           K+I G++++ ++ L    VDLI  DPPY        N Q+N   + +  +  ++A+ D+ 
Sbjct: 8   KLINGDALTFIKSLENDIVDLILTDPPYLYNLPKRKNEQINKNNISKSINKYINAIYDN- 66

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           +  +SF+        + ++  + +      W I  Y +      M  N +F+      W 
Sbjct: 67  NLHNSFDINTYLDEFYRISKTKFMLIWMNRWQIKDYLDWVYKNNM--NFDFYF-----WE 119

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
           K+NPMP       Q+    +I  S   +   Y  NY+  K 
Sbjct: 120 KTNPMPT-NNFILQDKEYCMIIYSKKHQIPNYQNNYENKKT 159


>gi|118576278|ref|YP_876021.1| DNA modification methylase [Cenarchaeum symbiosum A]
 gi|118194799|gb|ABK77717.1| DNA modification methylase [Cenarchaeum symbiosum A]
          Length = 288

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 33/65 (50%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           ++P QKP  L+ + +   T   D ILDPF GSGT+   + K  R     E  +   ++A 
Sbjct: 185 MYPEQKPLQLIEKSIKHFTDINDSILDPFGGSGTTMLASMKTGRKSTTFEWDECVYNMAK 244

Query: 263 KRIAS 267
            R+ +
Sbjct: 245 CRVGN 249


>gi|167037340|ref|YP_001664918.1| DNA methylase N-4/N-6 domain-containing protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115756|ref|YP_004185915.1| DNA methylase N-4/N-6 domain-containing protein [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|166856174|gb|ABY94582.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928847|gb|ADV79532.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 845

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           + T+ P   + R ++  TKPGDI+ D F G+G +G  A+
Sbjct: 83  YHTKVPHKAIMRYILHYTKPGDIVFDGFCGTGMTGVAAQ 121


>gi|313668401|ref|YP_004048685.1| type III restriction-modification system modification protein
           [Neisseria lactamica ST-640]
 gi|313005863|emb|CBN87319.1| putative type III restriction-modification system modification
           protein [Neisseria lactamica 020-06]
          Length = 568

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 84/202 (41%), Gaps = 44/202 (21%)

Query: 23  IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA------------ 67
           +I G+++ VL+ L      SV +I+ DPPYN   +G +Y+ D     A            
Sbjct: 40  LICGDNLEVLKHLKNAYTNSVKMIYIDPPYNTGSDGFVYQDDRKFTPAELARLANIDEDE 99

Query: 68  ---VTDSWDKFS-SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
              + D  DK S S  A+  F    L   R +L+ +G +++    +   ++         
Sbjct: 100 AARILDFTDKGSNSHSAWLTFMYPRLYVARELLREDGVIFISIDDNEAAQLK-------- 151

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWA---SPSPKAKGYTFNYDALKAANEDVQM 180
            +L D V+ + N +            E +IW    SP   AK ++ N+D L    +++  
Sbjct: 152 -LLCDEVFGEGNFV------------EQIIWEKKFSPQNDAKYFSENHDYLICYAKNITE 198

Query: 181 RSDWLIPICSGSE-RLRNKDGE 201
               L+P   G+  R +N D +
Sbjct: 199 LEIKLLPRTEGTNARYKNIDND 220



 Score = 37.4 bits (85), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 190 SGSERLRNK-DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
             S+ LR   DG+    T KP  L+ + L  +T P D+ILD F GSGT+     +L
Sbjct: 314 EASQELRKLFDGDSYFDTPKPIRLIVQTLRLTTNPDDLILDFFAGSGTTAHAVMQL 369


>gi|28211344|ref|NP_782288.1| hypothetical protein CTC01690 [Clostridium tetani E88]
 gi|28203784|gb|AAO36225.1| hypothetical protein CTC_01690 [Clostridium tetani E88]
          Length = 111

 Score = 38.5 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 4/73 (5%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
           I ++   I +  DKI++ NSI+++EK+  K  D+ ++DP    ++N  LY     LVD  
Sbjct: 32  IIKDAEEIIQIIDKILEDNSITLVEKIEQKMRDVRYSDP----EMNANLYILHRKLVDGK 87

Query: 69  TDSWDKFSSFEAY 81
            +  D  + F  Y
Sbjct: 88  INHKDADNLFHLY 100


>gi|289578544|ref|YP_003477171.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter italicus
           Ab9]
 gi|289528257|gb|ADD02609.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter italicus
           Ab9]
          Length = 853

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           + T+ P   + R ++  TKPGDI+ D F G+G +G  A+
Sbjct: 83  YHTKVPHKAIMRYILHYTKPGDIVFDGFCGTGMTGVAAQ 121


>gi|167585031|ref|ZP_02377419.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia ubonensis Bu]
          Length = 672

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 69/162 (42%), Gaps = 34/162 (20%)

Query: 19  WKDK---IIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQLYRPD-------HSLV 65
           W D    +I+G+++ V   L K  A  V L++ DPPYN         PD       H L 
Sbjct: 98  WDDTRHLVIEGDNLDVMKLLHKSYAGKVKLVYIDPPYN--TGSDFVYPDDFSDSLRHYL- 154

Query: 66  DAVTDSWD----KFSSFEAYDAFTRAW-------LLACRRVLKPNGTLWVIGSYHNIFRI 114
            AVT   D    + ++ EA   F   W       L     +L   G + V    H +  +
Sbjct: 155 -AVTGQTDGGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSDAGLIAVHIDEHEVHAL 213

Query: 115 GTMLQNLNFWILNDI---VWRKSNPMPNFRGRRFQNAHETLI 153
             ML+ + F   N++   VW K NP  + RG  +Q  HE+L+
Sbjct: 214 VLMLREI-FGEENELGVAVWDKRNPKGDARGVAYQ--HESLV 252


>gi|319944299|ref|ZP_08018573.1| type III restriction-modification system StyLTI enzyme mod
           [Lautropia mirabilis ATCC 51599]
 gi|319742260|gb|EFV94673.1| type III restriction-modification system StyLTI enzyme mod
           [Lautropia mirabilis ATCC 51599]
          Length = 536

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 14/122 (11%)

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH- 204
           ++  E LI+     K K   +        N+ V  ++ W       ++  R +  E LH 
Sbjct: 261 RHVAEGLIYWGKDGKGKVPAYKRYKHSLRNDGVVPQTLWPHEFAGHTDGSRKELREVLHD 320

Query: 205 -------PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGI 251
                   T KP  L+ R+L  +T    +ILD F GSGT+G    K       +R FI +
Sbjct: 321 IPSVSDFATPKPSLLIQRVLQIATDKDSLILDSFAGSGTTGHAVLKQNAEDGGKRRFILV 380

Query: 252 EM 253
           EM
Sbjct: 381 EM 382


>gi|257453506|ref|ZP_05618796.1| hypothetical protein ENHAE0001_1558 [Enhydrobacter aerosaccus SK60]
 gi|257448964|gb|EEV23917.1| hypothetical protein ENHAE0001_1558 [Enhydrobacter aerosaccus SK60]
          Length = 542

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 6/68 (8%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYIDI 260
           +KP  L+S++L  S+    IILD F GSGT+      +       R FI IE++    DI
Sbjct: 343 KKPVRLISQLLNMSSNRDSIILDSFAGSGTTAHAVLNINKQDGGNRKFILIELEDYANDI 402

Query: 261 ATKRIASV 268
             +R+  V
Sbjct: 403 TAERVKRV 410


>gi|317010107|gb|ADU80687.1| adenine-specific DNA-methyltransferase [Helicobacter pylori India7]
          Length = 486

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 25/38 (65%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
           +K+    KP  L++R++  ST  GDIILD F GSGT+ 
Sbjct: 427 QKIFNNPKPTKLINRLIELSTNEGDIILDFFAGSGTTA 464


>gi|218261571|ref|ZP_03476331.1| hypothetical protein PRABACTJOHN_01999 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223950|gb|EEC96600.1| hypothetical protein PRABACTJOHN_01999 [Parabacteroides johnsonii
           DSM 18315]
          Length = 911

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 25/42 (59%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           T+ P   + R ++  T+PGDII D F G+G +G  A+   +S
Sbjct: 138 TKVPHPAIMRYILHYTQPGDIIFDGFCGTGMTGVAAQACAKS 179


>gi|148655107|ref|YP_001275312.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus sp.
           RS-1]
 gi|148567217|gb|ABQ89362.1| DNA methylase N-4/N-6 domain protein [Roseiflexus sp. RS-1]
          Length = 372

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 4/47 (8%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           Q P  L+ R     T+ GD+++DPF GSGT+    ++L R  IG+E+
Sbjct: 156 QIPYQLMRRY----TRRGDLVIDPFAGSGTTLIEGRRLGRHTIGVEL 198


>gi|326389941|ref|ZP_08211504.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325994001|gb|EGD52430.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 853

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           + T+ P   + R ++  TKPGDI+ D F G+G +G  A+
Sbjct: 83  YHTKVPHKAIMRYILHYTKPGDIVFDGFCGTGMTGVAAQ 121


>gi|302391685|ref|YP_003827505.1| DNA methylase N-4/N-6 domain protein [Acetohalobium arabaticum DSM
           5501]
 gi|302203762|gb|ADL12440.1| DNA methylase N-4/N-6 domain protein [Acetohalobium arabaticum DSM
           5501]
          Length = 369

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 26/45 (57%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           P    ++++ + ++ GD ILDPF G GTS      L R  +GIE+
Sbjct: 29  PLEFAAKVITNHSEKGDWILDPFLGRGTSVYAGSILERKGLGIEI 73


>gi|260913426|ref|ZP_05919905.1| type III restriction-modification system EcoP15I [Pasteurella
           dagmatis ATCC 43325]
 gi|260632500|gb|EEX50672.1| type III restriction-modification system EcoP15I [Pasteurella
           dagmatis ATCC 43325]
          Length = 621

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 23/113 (20%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSL--- 64
           +NQ+S    ++ +IKG+++ VL+ L    A  V +I+ DPPYN   +G +Y+ D      
Sbjct: 89  QNQHS----QNLLIKGDNLEVLKHLKNAYANKVKMIYIDPPYNTGSDGFVYQDDRKFTPE 144

Query: 65  ---------VDAVTDSWD----KFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
                    +D      D    K +S  A+  F    L   R +LK +G +++
Sbjct: 145 QLAKLANMPIDEAKRVLDFTAKKSNSHSAWLTFMYPRLYIARELLKEDGVIFI 197


>gi|218672851|ref|ZP_03522520.1| DNA methylase N-4/N-6 domain-containing protein [Rhizobium etli
           GR56]
          Length = 724

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/132 (22%), Positives = 60/132 (45%), Gaps = 27/132 (20%)

Query: 19  WKDKIIKGNSISVLEKLPAKS-----VDLIFADPPYNLQLNGQLYRP------------- 60
           W ++++ G+S+ V+  L AK      V +I+ DPPY ++  G  ++P             
Sbjct: 162 WSNRLVAGDSLLVMNSLLAKESMRGKVQMIYIDPPYGIKY-GSNFQPFTNKRKLSDSDKD 220

Query: 61  -----DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
                +  ++ A  D+W+      +Y  + R  L+  R +L  +G ++V  S  N+  + 
Sbjct: 221 EDLNQEPEMIKAFRDTWE--LGIHSYLTYLRDRLILARELLNDSGAVFVQISDENVHLVR 278

Query: 116 TMLQNLNFWILN 127
            +L  + F + N
Sbjct: 279 GVLDEI-FGVTN 289



 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 34/57 (59%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           ++ R ++ +T PGD++LD   GSGT+   A+K  R +I  +  +  I +A +R+ + 
Sbjct: 433 IVERCILMTTDPGDLVLDITCGSGTTAFTAEKWGRRWITCDTSRIAITLAKQRLMTA 489


>gi|320193607|gb|EFW68242.1| modification methylase, putative [Escherichia coli WV_060327]
          Length = 923

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 10/77 (12%)

Query: 200 GEKLHP------TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           G  +HP       Q P  L+SR+    +  G+ +LDPF GSGT+   A KL R  I I+ 
Sbjct: 52  GHDIHPYPAKFIPQLPHGLISRL----SGRGETVLDPFGGSGTTALEAVKLGRKAISIDA 107

Query: 254 KQDYIDIATKRIASVQP 270
                 I   + A ++P
Sbjct: 108 NPLSALIGRVKTARLEP 124


>gi|167565743|ref|ZP_02358659.1| site-specific DNA methyltransferase [Burkholderia oklahomensis
           EO147]
          Length = 143

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K H T+KP  + +R +V     G ++ D F GSGT  A A++  R +IG E    Y  IA
Sbjct: 69  KQHVTEKPLDI-AREVVRLVPVGGVVCDLFAGSGTFLAAAREAGRHWIGCETNAAYHAIA 127

Query: 262 TKRI 265
           + R+
Sbjct: 128 SARL 131


>gi|147920406|ref|YP_685819.1| putative RNA methyltransferase [uncultured methanogenic archaeon
           RC-I]
 gi|110621215|emb|CAJ36493.1| putative RNA methyltransferase [uncultured methanogenic archaeon
           RC-I]
          Length = 350

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 177 DVQMRSDWL-IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
           DV+  S +L + +   + R R ++ + L    K     + +L+S  +P DI LDPF GSG
Sbjct: 158 DVEGGSAFLHVKLTPATFRYRGQEKQFLSAALKASVAHAMVLISMPRPDDIFLDPFCGSG 217

Query: 236 TSGAV-AKKLRRSFIGIEMKQDYIDIATKRI 265
           T  A  A    ++ IG ++  + ++IA + +
Sbjct: 218 TILAERASCEAKAIIGSDISPERLEIARQNL 248


>gi|240147217|ref|ZP_04745818.1| modification methylase XcyI [Roseburia intestinalis L1-82]
 gi|257200594|gb|EEU98878.1| modification methylase XcyI [Roseburia intestinalis L1-82]
          Length = 38

 Score = 38.5 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 22/34 (64%)

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           GSGT+G  AK L R +IGIE+  +Y  +A  RI 
Sbjct: 1   GSGTTGLAAKSLDRRYIGIELNAEYCALAGARIG 34


>gi|284097306|ref|ZP_06385442.1| type III restriction-modification system methyltransferase
           [Candidatus Poribacteria sp. WGA-A3]
 gi|283831180|gb|EFC35154.1| type III restriction-modification system methyltransferase
           [Candidatus Poribacteria sp. WGA-A3]
          Length = 545

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYID 259
           T KP  LL+RI+  ST    IILD F GSGT+      L       R FI  E  +DY D
Sbjct: 330 TTKPVELLTRIIRLSTDKDSIILDSFAGSGTTAHAVLALNKEDGGNRKFILAEC-EDYAD 388

Query: 260 -IATKRIASV 268
            I  +R+  V
Sbjct: 389 TITAERVRRV 398


>gi|110004831|emb|CAK99164.1| hypothetical n-6 adenine-specific dna methyltransferase
          c-terminal truncated protein [Spiroplasma citri]
          Length = 163

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 14/24 (58%), Positives = 20/24 (83%)

Query: 26 GNSISVLEKLPAKSVDLIFADPPY 49
          G+S+ +L+K+P KS+DLI  DPPY
Sbjct: 11 GDSLEILKKIPDKSIDLILTDPPY 34


>gi|256752456|ref|ZP_05493314.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256748658|gb|EEU61704.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 849

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           + T+ P   + R ++  TKPGDI+ D F G+G +G  A+
Sbjct: 83  YHTKVPHKAIMRYILHYTKPGDIVFDGFCGTGMTGVAAQ 121


>gi|307943607|ref|ZP_07658951.1| DNA methylase N-4/N-6 domain-containing protein [Roseibium sp.
           TrichSKD4]
 gi|307773237|gb|EFO32454.1| DNA methylase N-4/N-6 domain-containing protein [Roseibium sp.
           TrichSKD4]
          Length = 961

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 30/49 (61%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           +P + P  +  +++ + + PGD++ DPF GSGT+   A +L R  + ++
Sbjct: 88  YPAKFPPQIPGQLIAALSFPGDLVFDPFGGSGTTAVEAVRLGRRTVSLD 136


>gi|257793073|ref|YP_003186471.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257479765|gb|ACV60082.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 571

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 11/102 (10%)

Query: 177 DVQMRSDWLI--PICSGSERLRNKDGEK-LHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
           D +  S+W +      GS+ L++  GE  +    KP  L+  IL  ++    IILD F G
Sbjct: 326 DQESASEWTVYGTTTRGSQTLQDIFGETGIFNNPKPVELVKHILRLASDKSSIILDSFAG 385

Query: 234 SGTSGAVAKKL------RRSFIGIEMKQDYID-IATKRIASV 268
           SGT+      +       R FI +EM +DY D I  +R+  V
Sbjct: 386 SGTTAHAVLSMNKEDGGNRKFILVEM-EDYADRITAERVRRV 426


>gi|254003154|ref|YP_003052620.1| DNA methylase N-4/N-6 domain protein [Methylovorus sp. SIP3-4]
 gi|253987237|gb|ACT52093.1| DNA methylase N-4/N-6 domain protein [Methylovorus sp. SIP3-4]
          Length = 413

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 37/73 (50%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G   H    P +L S ++   ++P D+++DPF GS ++   A++L R ++  E   +Y+ 
Sbjct: 336 GLPAHGAAMPLSLASFLIEFLSRPDDLVVDPFGGSFSTAKAAEQLGRRWLSTECMIEYVL 395

Query: 260 IATKRIASVQPLG 272
            A+ R       G
Sbjct: 396 GASVRFKEFDGFG 408


>gi|261365259|ref|ZP_05978142.1| type III restriction-modification system StyLTI enzyme mod
           [Neisseria mucosa ATCC 25996]
 gi|288566347|gb|EFC87907.1| type III restriction-modification system StyLTI enzyme mod
           [Neisseria mucosa ATCC 25996]
          Length = 655

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYID 259
           T KP  LL ++L   + P D+ILD F GSGT+     +L       R FI +++ ++  +
Sbjct: 424 TPKPTTLLLQMLKIGSNPNDLILDFFSGSGTTAHAVMQLNAEDGGSRRFICVQLPEETDE 483

Query: 260 IATKRIASVQPLGNI 274
            +  R A    +  I
Sbjct: 484 KSEARKAGFNTIAEI 498


>gi|270118178|ref|YP_003329506.1| methyltransferase, type III restriction-modification system,
           truncated [Lactococcus lactis]
 gi|76574870|gb|ABA47341.1| methyltransferase, type III restriction-modification system,
           truncated [Lactococcus lactis]
          Length = 183

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 7/78 (8%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           +S+ +LEK     +D+I+ DPPYN      +Y  D    D      D+F     + +F  
Sbjct: 101 HSLHLLEKTHLGKIDIIYIDPPYNTGNKDFVYNDDFVGKD------DEFKH-SKWLSFME 153

Query: 87  AWLLACRRVLKPNGTLWV 104
             L+  +++L PNG ++V
Sbjct: 154 RRLIIAKKLLSPNGVIFV 171


>gi|206900883|ref|YP_002251611.1| putative DNA methylase [Dictyoglomus thermophilum H-6-12]
 gi|206739986|gb|ACI19044.1| putative DNA methylase [Dictyoglomus thermophilum H-6-12]
          Length = 311

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA-SVQPL 271
           +++  T  GD +LD   GSGT+   AK L R+ IG+++  D + +A  R+  S  PL
Sbjct: 85  LILKYTAKGDWVLDQMMGSGTTLVEAKLLERNAIGVDINLDAVMVALDRLNFSYNPL 141


>gi|312792858|ref|YP_004025781.1| DNA methylase N-4/N-6 domain-containing protein
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179998|gb|ADQ40168.1| DNA methylase N-4/N-6 domain protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 860

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 23/38 (60%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
           + T+ P   + R ++  TKPGDI+ D F GSG +G  A
Sbjct: 83  YHTKVPYKAIMRYILHYTKPGDIVFDGFCGSGMTGVAA 120


>gi|295099932|emb|CBK89021.1| RNA methyltransferase, RsmD family [Eubacterium cylindroides T2-87]
          Length = 182

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 4/60 (6%)

Query: 1   MSQKNSLAIN---ENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQL 57
           M +K+ +A+N   EN  S+ E   +II G+  SV+ +L  ++ DL++ DPPY  + N +L
Sbjct: 69  MVEKDRMALNVICENVKSLQEKNCEIISGSIFSVMNRLK-EAYDLVYIDPPYKEEKNVEL 127


>gi|289432020|ref|YP_003461893.1| DNA methylase N-4/N-6 domain protein [Dehalococcoides sp. GT]
 gi|288945740|gb|ADC73437.1| DNA methylase N-4/N-6 domain protein [Dehalococcoides sp. GT]
          Length = 797

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 17/96 (17%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF---- 78
           II   S   L  +P+ S+D +F DPPY+ ++        +  ++ V ++W  F       
Sbjct: 376 IISTQSAGDLSAIPSNSIDYVFTDPPYSDKM-------PYGALNTVWEAWLGFERLWLAE 428

Query: 79  ----EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
               + ++A  RA +    RVLKP    W+   YH+
Sbjct: 429 EVIGDRWEAGIRAAMKEVFRVLKPGH--WISLCYHD 462



 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 23/33 (69%)

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           T  GD+ILDPF GSG +  VA  L R+ IGI++
Sbjct: 94  TSTGDLILDPFCGSGATLIVAATLGRNSIGIDL 126


>gi|317055783|ref|YP_004104250.1| adenine-specific DNA-methyltransferase [Ruminococcus albus 7]
 gi|315448052|gb|ADU21616.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Ruminococcus albus 7]
          Length = 683

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           DG  +  T KP  LL RI+  +T   D++LD F GSGT+     K+  S  G
Sbjct: 450 DGTTVFDTPKPVRLLDRIITIATNTEDVVLDFFSGSGTTAESLLKMNMSDSG 501


>gi|157826175|ref|YP_001493895.1| DNA modification methylase-like protein [Rickettsia akari str.
           Hartford]
 gi|157800133|gb|ABV75387.1| DNA modification methylase-like protein [Rickettsia akari str.
           Hartford]
          Length = 44

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           HP   P AL+ RI+ S+     I+LDPF GS T+   A+KL
Sbjct: 5   HPRPFPNALIKRIISSTN--AKIVLDPFIGSVTTAIAAQKL 43


>gi|308185292|ref|YP_003929425.1| type III R-M system modification enzyme [Helicobacter pylori
           SJM180]
 gi|308061212|gb|ADO03108.1| type III R-M system modification enzyme [Helicobacter pylori
           SJM180]
          Length = 459

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 20/171 (11%)

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +A D+ T  ++ +   +++ NG  ++ G      R    LQ +N  + ++  WR S    
Sbjct: 275 QALDSNTLGYVKSLDYIIEINGKKYIAGGLTEYQR----LQKVNGRLADNFRWRWSKAKF 330

Query: 139 NF-RGRRFQNAHETLIWASPSPKAK-----GYTFNY-----DALKAANEDVQMRSDWLIP 187
           +F     F       I+     KAK      Y   Y     + L     D +  +D    
Sbjct: 331 DFGLANGFVEVKNNRIYTKTYTKAKISDSKPYKIEYFNRTKNILSVDFIDHKYSNDM--- 387

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
              G ++L N+    +    KP  L+S ++  +T+ GDIILD F GSGT+ 
Sbjct: 388 ATKGLQKLFNE--RNIFDYSKPVELISFLIDQTTEKGDIILDFFAGSGTTA 436


>gi|120536948|ref|YP_957006.1| DNA methylase N-4/N-6 domain-containing protein [Marinobacter
           aquaeolei VT8]
 gi|120326782|gb|ABM21091.1| DNA methylase N-4/N-6 domain protein [Marinobacter aquaeolei VT8]
          Length = 657

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           L NKD     P  KP +L+  +L  + +P DI LD F GSGT+G    +L
Sbjct: 426 LNNKD----FPYPKPPSLMRELLRQAMRPDDIALDFFAGSGTTGQAVLEL 471


>gi|104774131|ref|YP_619111.1| Type III restriction-modification system methyltransferase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
 gi|103423212|emb|CAI98032.1| Type III restriction-modification system methyltransferase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 624

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 47/85 (55%), Gaps = 9/85 (10%)

Query: 181 RSDWLIPI---CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           +S WL  +     G++++ +  G+   P  KP +L+  +++ +T+   II+D F GS T+
Sbjct: 367 QSTWLSDVGMNIEGTKQMYDLFGKSFFPYTKPMSLIKSLILQATEKDSIIVDFFSGSATT 426

Query: 238 GAVAKKL------RRSFIGIEMKQD 256
              A +L      +R +I ++++++
Sbjct: 427 AQAAMQLNAEDGGKRKYILVQLQEE 451


>gi|107024141|ref|YP_622468.1| HemK family modification methylase [Burkholderia cenocepacia AU
           1054]
 gi|116688533|ref|YP_834156.1| HemK family modification methylase [Burkholderia cenocepacia
           HI2424]
 gi|105894330|gb|ABF77495.1| [protein release factor]-glutamine N5-methyltransferase
           [Burkholderia cenocepacia AU 1054]
 gi|116646622|gb|ABK07263.1| [protein release factor]-glutamine N5-methyltransferase
           [Burkholderia cenocepacia HI2424]
          Length = 280

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 9/90 (10%)

Query: 36  PAKSVDLIFADPPYNLQLNGQLYRPDHSLV--DAVTDSWDKFSSFEAYDAFTRAWLLACR 93
           PA   D I ++PPY  Q +  L + D       A+TD  D  S+  A  A   A+L    
Sbjct: 176 PALGFDAIVSNPPYIAQHDPHLAQGDLRFEPRGALTDDADGLSAIRAIVAGAGAYL---- 231

Query: 94  RVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
              KP GTLW+   Y     +  +L +  F
Sbjct: 232 ---KPGGTLWIEHGYDQAEAVRAILASHGF 258


>gi|188591462|ref|YP_001796061.1| putative DNA methyltransferase, Modification methylase [Cupriavidus
           taiwanensis]
 gi|170938857|emb|CAP63858.1| putative DNA methyltransferase, Modification methylase [Cupriavidus
           taiwanensis LMG 19424]
          Length = 414

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           + PT  P+   +R L   ++PGD+++DPF G+  +G  A++L R +I  E    Y+  A 
Sbjct: 337 MQPTDIPD-FFTRFL---SRPGDLVVDPFGGTIRTGLAAERLGRRWIATEWILQYVRGAA 392

Query: 263 K 263
           +
Sbjct: 393 E 393


>gi|118575798|ref|YP_875541.1| adenine specific DNA methylase [Cenarchaeum symbiosum A]
 gi|118194319|gb|ABK77237.1| adenine specific DNA methylase [Cenarchaeum symbiosum A]
          Length = 585

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           ++KP  ++   +   ++PG+I+LDPF GSG S   +  L R  IGI++
Sbjct: 72  SKKPFNVVRSYIKEYSRPGEIVLDPFCGSGISNTESLVLGRRTIGIDI 119


>gi|75675011|ref|YP_317432.1| hypothetical protein Nwi_0815 [Nitrobacter winogradskyi Nb-255]
 gi|74419881|gb|ABA04080.1| hypothetical protein Nwi_0815 [Nitrobacter winogradskyi Nb-255]
          Length = 308

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA-SVQP 270
           G  +LDPF G    G VA +L R ++GIE++ + ++    ++  +V+P
Sbjct: 95  GGTVLDPFAGGSVRGIVASRLGRRYVGIELRHEQVEANRAQVTIAVEP 142


>gi|288819197|ref|YP_003433545.1| DNA methylase [Hydrogenobacter thermophilus TK-6]
 gi|288788597|dbj|BAI70344.1| DNA methylase [Hydrogenobacter thermophilus TK-6]
 gi|308752779|gb|ADO46262.1| DNA methylase N-4/N-6 domain protein [Hydrogenobacter thermophilus
           TK-6]
          Length = 293

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           +++  T  GD +LD   GSGT+   AK L R+ IG+++  D + +A  R+
Sbjct: 77  LILKYTNKGDWVLDQMMGSGTTLVEAKLLERNAIGVDINLDAVMVALDRL 126


>gi|170731402|ref|YP_001763349.1| site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia cenocepacia MC0-3]
 gi|169814644|gb|ACA89227.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia cenocepacia MC0-3]
          Length = 668

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 30/160 (18%)

Query: 19  WKDK---IIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQLYRPD-------HSL- 64
           W D    +I+G+++ V   L K  A  V L++ DPPYN         PD       H L 
Sbjct: 94  WDDTRHLVIEGDNLDVMKLLHKSYAGKVKLVYIDPPYN--TGSDFVYPDDFSDSIRHYLA 151

Query: 65  VDAVTDSWDKFSS-FEAYDAFTRAW-------LLACRRVLKPNGTLWVIGSYHNIFRIGT 116
           +   TD+  K S+  EA   F   W       L     +L   G + V    H +  +  
Sbjct: 152 MTGQTDAGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSDEGLIAVHIDEHEVHALVL 211

Query: 117 MLQNLNFWILNDI---VWRKSNPMPNFRGRRFQNAHETLI 153
           ML+ + F   N++   VW K NP  + RG  +Q  HE+L+
Sbjct: 212 MLREI-FGEENELGVAVWDKRNPKGDARGVAYQ--HESLV 248


>gi|325283867|ref|YP_004256408.1| DNA methylase N-4/N-6 domain-containing protein [Deinococcus
           proteolyticus MRP]
 gi|324315676|gb|ADY26791.1| DNA methylase N-4/N-6 domain protein [Deinococcus proteolyticus
           MRP]
          Length = 613

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 16/152 (10%)

Query: 23  IIKGNSISVLEKLPA--KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-------SWD 73
           +I+G+++ V+  L      VDLI ADPPYN    G  +R +    D   D       + D
Sbjct: 40  LIEGDNLQVMASLYRYRGQVDLIIADPPYN---TGNDFRYNDRWNDDPNDPDPGQLVTSD 96

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV--- 130
             +    +  F    L   + +L+P G   V      +FR+G ML +  F   N +    
Sbjct: 97  DGARHTKWMRFMAPRLEMMKAMLRPGGVCAVCIDERELFRLG-MLMDDTFGESNRLAIIN 155

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
           W+KS    N            L++A    KAK
Sbjct: 156 WQKSYSAKNDSAHVSTATEYVLVYARVREKAK 187


>gi|52425081|ref|YP_088218.1| hypothetical protein MS1026 [Mannheimia succiniciproducens MBEL55E]
 gi|52307133|gb|AAU37633.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 649

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 19/101 (18%)

Query: 23  IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDH--------SLVDAVTDS 71
           +I+G+++ VL+ L      SV +I+ DPPYN   +G +Y+ D         +L +   D 
Sbjct: 97  LIQGDNLEVLKHLKNAYRNSVKMIYIDPPYNTGSDGFVYQDDRKFTPEQLATLANITPDE 156

Query: 72  WDKFSSF--------EAYDAFTRAWLLACRRVLKPNGTLWV 104
            ++  +F         A+  F    L   R +LK +G +++
Sbjct: 157 AERILNFTDKGSNSHSAWLTFMYPRLYVARELLKEDGVIFI 197


>gi|163846442|ref|YP_001634486.1| putative RNA methylase [Chloroflexus aurantiacus J-10-fl]
 gi|222524216|ref|YP_002568687.1| putative RNA methylase [Chloroflexus sp. Y-400-fl]
 gi|163667731|gb|ABY34097.1| putative RNA methylase [Chloroflexus aurantiacus J-10-fl]
 gi|222448095|gb|ACM52361.1| putative RNA methylase [Chloroflexus sp. Y-400-fl]
          Length = 280

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 35/68 (51%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           + HP+ KP  L++ ++   T+    +LDPF G G +   +    R+ +GI++  +Y  I 
Sbjct: 45  RQHPSPKPPQLMAELIRFFTRQHGHVLDPFAGVGGTLIASSLEGRTAVGIDLSAEYATIY 104

Query: 262 TKRIASVQ 269
               A +Q
Sbjct: 105 QAVCAELQ 112


>gi|172059095|ref|YP_001806747.1| site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia ambifaria MC40-6]
 gi|171991612|gb|ACB62531.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia ambifaria MC40-6]
          Length = 668

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 69/162 (42%), Gaps = 34/162 (20%)

Query: 19  WKDK---IIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQLYRPD-------HSLV 65
           W D    +I+G+++ V   L K  A  V L++ DPPYN         PD       H L 
Sbjct: 94  WDDTRHLVIEGDNLDVMKLLHKSYAGKVKLVYIDPPYN--TGSDFVYPDDFSDSIRHYL- 150

Query: 66  DAVTDSWD----KFSSFEAYDAFTRAW-------LLACRRVLKPNGTLWVIGSYHNIFRI 114
            A+T   D    + ++ EA   F   W       L     +L   G + V    H +  +
Sbjct: 151 -AMTGQTDGGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSDEGLIAVHIDEHEVHAL 209

Query: 115 GTMLQNLNFWILNDI---VWRKSNPMPNFRGRRFQNAHETLI 153
             ML+ + F   N++   VW K NP  + RG  +Q  HE+L+
Sbjct: 210 VLMLREI-FGEENELGVAVWDKRNPKGDARGVAYQ--HESLV 248


>gi|333011538|gb|EGK30951.1| DNA methylase [Shigella flexneri K-227]
 gi|333011652|gb|EGK31061.1| DNA methylase [Shigella flexneri K-227]
          Length = 156

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
          + + GN I V+ ++P  ++D I  DPPY   L G   R   ++    TD W + +  E Y
Sbjct: 3  RFVLGNCIDVMARIPDNAIDFILTDPPY---LVGFRDRQGRTIAGDKTDEWLQPACNEMY 59

Query: 82 DAFTRAWLL 90
              +  L+
Sbjct: 60 RVLKKDALM 68


>gi|170698060|ref|ZP_02889141.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia ambifaria IOP40-10]
 gi|170137021|gb|EDT05268.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia ambifaria IOP40-10]
          Length = 668

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 69/162 (42%), Gaps = 34/162 (20%)

Query: 19  WKDK---IIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQLYRPD-------HSLV 65
           W D    +I+G+++ V   L K  A  V L++ DPPYN         PD       H L 
Sbjct: 94  WDDTRHLVIEGDNLDVMKLLHKSYAGKVKLVYIDPPYN--TGSDFVYPDDFSDSIRHYL- 150

Query: 66  DAVTDSWD----KFSSFEAYDAFTRAW-------LLACRRVLKPNGTLWVIGSYHNIFRI 114
            A+T   D    + ++ EA   F   W       L     +L   G + V    H +  +
Sbjct: 151 -AMTGQTDGGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSDEGLIAVHIDEHEVHAL 209

Query: 115 GTMLQNLNFWILNDI---VWRKSNPMPNFRGRRFQNAHETLI 153
             ML+ + F   N++   VW K NP  + RG  +Q  HE+L+
Sbjct: 210 VLMLREI-FGEENELGVAVWDKRNPKGDARGVAYQ--HESLV 248


>gi|19552128|ref|NP_600130.1| adenine specific DNA methylase Mod [Corynebacterium glutamicum ATCC
           13032]
 gi|62389793|ref|YP_225195.1| restriction-modification system: methylase [Corynebacterium
           glutamicum ATCC 13032]
 gi|41325128|emb|CAF19609.1| PUTATIVE RESTRICTION-MODIFICATION SYSTEM: METHYLASE
           [Corynebacterium glutamicum ATCC 13032]
          Length = 385

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 7/95 (7%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           +++ +L      S+D I+ DPPYN       Y  D+   D      D +     + AF  
Sbjct: 149 HALEMLTYTHRHSIDAIYIDPPYNTGARDWKYDNDYVASD------DDY-RHSKWLAFME 201

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
             L  CR +++ + TL      H + R+G +L  L
Sbjct: 202 RRLKICRELMRSDATLVATIDEHEVNRLGVLLDQL 236


>gi|296159514|ref|ZP_06842338.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. Ch1-1]
 gi|295890222|gb|EFG70016.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. Ch1-1]
          Length = 673

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 39/147 (26%)

Query: 40  VDLIFADPPYNLQLNGQLYR-----------PDHSLVDAVTDS-----WDKFSSFEAYDA 83
           VDLI  DPPYN    G+ +R           PD   + A  D      W KF +      
Sbjct: 118 VDLIITDPPYN---TGEDFRYNDKWDKDPNDPDLGELVAKDDGSRHSKWLKFMT------ 168

Query: 84  FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-----NFWILNDIVWRKSNPMP 138
             R W++  R +LKP G + +   +  ++R+G ++  +        I+N   W+K+    
Sbjct: 169 -PRVWMM--REMLKPGGVIAICIDHRELYRLGMLMDEIFGEDNRLAIIN---WQKTYAPK 222

Query: 139 NFRGRRFQNAHET---LIWASPSPKAK 162
           N  G+R   +  T   L++A    +AK
Sbjct: 223 NNVGKRSHVSTSTEYVLVYAKSIDQAK 249


>gi|33323516|gb|AAQ07486.1|AF503408_10 Mod [Enterobacteria phage P7]
          Length = 646

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 23/113 (20%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDH----- 62
           EN+NS    ++ +IKG+++ VL+ +    A+ V++I+ DPPYN   +G +Y  D      
Sbjct: 89  ENKNS----QNLLIKGDNLEVLKHMVNAYAEKVNMIYIDPPYNTGKDGFVYNDDRKFTPE 144

Query: 63  ---SLVDAVTDSWDKF--------SSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
               L     D  ++         SS  A+  F    L   R +LK +G +++
Sbjct: 145 QLSELAGIELDEANRILEFTTKGSSSHSAWLTFIYPRLYIARELLKEDGVIFI 197


>gi|325926088|ref|ZP_08187449.1| DNA modification methylase [Xanthomonas perforans 91-118]
 gi|325927475|ref|ZP_08188718.1| DNA modification methylase [Xanthomonas perforans 91-118]
 gi|325542154|gb|EGD13653.1| DNA modification methylase [Xanthomonas perforans 91-118]
 gi|325543433|gb|EGD14855.1| DNA modification methylase [Xanthomonas perforans 91-118]
          Length = 99

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 13/87 (14%)

Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRP------DHSLVDAVTD 70
          K+++++G+++++L  L A S D +  DPPY    L    +   P      D    D V D
Sbjct: 2  KNQLLQGDALTILPTLEANSFDALITDPPYASGGLTAAARARPPSTKYCRDGGHADFVGD 61

Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLK 97
            D+ S  +    +   WL  C RVLK
Sbjct: 62 ERDQRSHLK----WMHLWLSECARVLK 84


>gi|325107710|ref|YP_004268778.1| DNA methylase N-4/N-6 domain protein [Planctomyces brasiliensis DSM
           5305]
 gi|324967978|gb|ADY58756.1| DNA methylase N-4/N-6 domain protein [Planctomyces brasiliensis DSM
           5305]
          Length = 950

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 23/37 (62%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           T+ P   + R L+  T PGDI+LD F G+G +G  A+
Sbjct: 144 TKVPHKAIMRYLLHYTMPGDIVLDGFCGTGMTGVAAQ 180


>gi|257885935|ref|ZP_05665588.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
 gi|257821791|gb|EEV48921.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
          Length = 906

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 4/75 (5%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID---- 259
           + T+ P   +   L+  TKPGDI+ D F G+G +G  +  +      +E+K D  D    
Sbjct: 117 YHTKVPYKAIMSYLLHYTKPGDIVYDAFSGTGMTGVASSLMNNKEELLEIKPDITDNDIG 176

Query: 260 IATKRIASVQPLGNI 274
           +    ++ + P+G++
Sbjct: 177 VRHAFLSDLAPVGSV 191


>gi|15644888|ref|NP_207058.1| adenine specific DNA methyltransferase (mod) [Helicobacter pylori
           26695]
 gi|2313354|gb|AAD07328.1| adenine specific DNA methyltransferase (mod) [Helicobacter pylori
           26695]
          Length = 384

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 183 DWLIPICSGSERLRNKDGEKL-----HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           D  + +     R   KD EKL       T KP AL+  +L+ ST    IILD F GSGT+
Sbjct: 259 DNCLSVLDFYSRQGTKDLEKLGLKGLFKTPKPVALIKYLLLCSTPKDSIILDFFAGSGTT 318

Query: 238 GAVAKKLRRSF 248
                ++ R +
Sbjct: 319 AQAVIEVNRDY 329


>gi|135252|sp|P08763|T3MO_BPP1 RecName: Full=Type III restriction-modification system EcoPI enzyme
           mod; Short=M.EcoPI; AltName: Full=EcoPI
           methyltransferase
 gi|15139|emb|CAA29614.1| unnamed protein product [Enterobacteria phage P1]
          Length = 646

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 23/113 (20%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDH----- 62
           EN+NS    ++ +IKG+++ VL+ +    A+ V++I+ DPPYN   +G +Y  D      
Sbjct: 89  ENKNS----QNLLIKGDNLEVLKHMVNAYAEKVNMIYIDPPYNTGKDGFVYNDDRKFTPE 144

Query: 63  ---SLVDAVTDSWDKF--------SSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
               L     D  ++         SS  A+  F    L   R +LK +G +++
Sbjct: 145 QLSELAGIELDEANRILEFTTKGSSSHSAWLTFIYPRLYIARELLKEDGVIFI 197


>gi|37518398|emb|CAD58550.1| hypothetical protein [Yersinia enterocolitica]
          Length = 647

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 6/53 (11%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIE 252
           T KP  L+++I+    +P  I+LDPF GSGT+G    +L       R FI IE
Sbjct: 415 TVKPLKLMTKIIQLWCRPDGIVLDPFAGSGTTGHAVLELNKEADTNRRFILIE 467



 Score = 36.6 bits (83), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 16/92 (17%)

Query: 40  VDLIFADPPYNLQLNGQLYR---------PDHSLVDAV-TDSWDKFSSFEAYDAFTRAWL 89
           +DL+  DPPYN    G+ +R          D  L D V  D   K S +  +    R W+
Sbjct: 90  IDLVLTDPPYN---TGEDFRYNDKWDKDPNDPDLGDVVPKDDGSKHSKWLRF-MTPRIWM 145

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
           +  R +LKP G + +   +  +FR+G ++  +
Sbjct: 146 M--REMLKPGGVMAICIDHRELFRLGMLMDEI 175


>gi|115350076|ref|YP_771915.1| adenine-specific DNA-methyltransferase [Burkholderia ambifaria
           AMMD]
 gi|115280064|gb|ABI85581.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia ambifaria AMMD]
          Length = 672

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 69/162 (42%), Gaps = 34/162 (20%)

Query: 19  WKDK---IIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQLYRPD-------HSLV 65
           W D    +I+G+++ V   L K  A  V L++ DPPYN         PD       H L 
Sbjct: 98  WDDTRHLVIEGDNLDVMKLLHKSYAGKVKLVYIDPPYN--TGSDFVYPDDFSDSIRHYL- 154

Query: 66  DAVTDSWD----KFSSFEAYDAFTRAW-------LLACRRVLKPNGTLWVIGSYHNIFRI 114
            A+T   D    + ++ EA   F   W       L     +L   G + V    H +  +
Sbjct: 155 -AMTGQTDGGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSDEGLIAVHIDEHEVHAL 213

Query: 115 GTMLQNLNFWILNDI---VWRKSNPMPNFRGRRFQNAHETLI 153
             ML+ + F   N++   VW K NP  + RG  +Q  HE+L+
Sbjct: 214 VLMLREI-FGEENELGVAVWDKRNPKGDARGVAYQ--HESLV 252


>gi|306823148|ref|ZP_07456524.1| DNA (cytosine-5-)-methyltransferase [Bifidobacterium dentium ATCC
           27679]
 gi|309801507|ref|ZP_07695632.1| DNA (cytosine-5-)-methyltransferase [Bifidobacterium dentium
           JCVIHMP022]
 gi|304553780|gb|EFM41691.1| DNA (cytosine-5-)-methyltransferase [Bifidobacterium dentium ATCC
           27679]
 gi|308221819|gb|EFO78106.1| DNA (cytosine-5-)-methyltransferase [Bifidobacterium dentium
           JCVIHMP022]
          Length = 294

 Score = 37.7 bits (86), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           +ERL  +D ++ H      + + R +   +  G+++ DPF G G++   A KL R  + I
Sbjct: 207 NERLGREDTDERHICPLQLSFIERCIRLWSNKGELVFDPFGGIGSTVYEAIKLGRRGLSI 266

Query: 252 EMKQDYIDIATKRIASVQPLGNIE 275
           E+K  Y        ASV+ + N+E
Sbjct: 267 ELKPSYWK------ASVELMRNLE 284


>gi|54303973|emb|CAG24072.1| restriction endonuclease EcoP15I, modification subunit [Escherichia
           coli]
          Length = 644

 Score = 37.7 bits (86), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 27/146 (18%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDH----- 62
           EN+NS    +  +IKG+++ VL+ +    A+ V +I+ DPPYN   +G +Y  D      
Sbjct: 89  ENKNS----QHLLIKGDNLEVLKHMVNAYAEKVKMIYIDPPYNTGKDGFVYNDDRKFTPE 144

Query: 63  ---SLVDAVTDSWDKF--------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
               L     D   +         SS  A+  F    L   R +++ +GT++ I   HN 
Sbjct: 145 QLSELAGIDLDEAKRILEFTTKGSSSHSAWLTFIYPRLYIARELMREDGTIF-ISIDHNE 203

Query: 112 FRIGTMLQNLNFWILN---DIVWRKS 134
           F    ++ +  F   N   D+VW+ +
Sbjct: 204 FSQLKLVCDEIFGEQNHVGDLVWKNA 229


>gi|303232411|ref|ZP_07319103.1| DNA (cytosine-5-)-methyltransferase [Atopobium vaginae PB189-T1-4]
 gi|302481495|gb|EFL44563.1| DNA (cytosine-5-)-methyltransferase [Atopobium vaginae PB189-T1-4]
          Length = 576

 Score = 37.7 bits (86), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 7/78 (8%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           +S+ +LEK  A  +D+I+ DPPYN      +Y       DA  D  D +S    + +F  
Sbjct: 93  HSLKLLEKTHAGKIDVIYIDPPYNTGNKDFIYD------DAFIDKTDGYSH-SKWLSFMS 145

Query: 87  AWLLACRRVLKPNGTLWV 104
             L   +R+L  +G +++
Sbjct: 146 ERLEIAKRLLSDDGVIFI 163


>gi|241759017|ref|ZP_04757129.1| type III restriction-modification system EcoP15I enzyme mod
           [Neisseria flavescens SK114]
 gi|241320838|gb|EER57071.1| type III restriction-modification system EcoP15I enzyme mod
           [Neisseria flavescens SK114]
          Length = 644

 Score = 37.7 bits (86), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 7/92 (7%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLR--- 245
           + S+ L +  G+ +    KP +L+ R+L ++S K   IILD F GSGT+     +L    
Sbjct: 395 AASKELESMIGKGIFTFPKPPSLIKRMLKIASNKKDSIILDFFTGSGTTAHAVMQLNAED 454

Query: 246 ---RSFIGIEMKQDYIDIATKRIASVQPLGNI 274
              R FI +++ ++  + +  R A    +  I
Sbjct: 455 GGSRRFICVQLPEETDEKSEARKAGFDTIAEI 486


>gi|261840194|gb|ACX99959.1| adenine specific DNA methylase [Helicobacter pylori 52]
          Length = 482

 Score = 37.7 bits (86), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 30/49 (61%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
           +G++ + +   +K+    KP  L+SR++  ST   DIILD F GSGT+ 
Sbjct: 413 NGTKEVNDLFNQKVFNNPKPTKLISRLIELSTNENDIILDFFAGSGTTA 461


>gi|145631556|ref|ZP_01787323.1| putative type III restriction-modification system methyltransferase
           [Haemophilus influenzae R3021]
 gi|144982825|gb|EDJ90347.1| putative type III restriction-modification system methyltransferase
           [Haemophilus influenzae R3021]
          Length = 628

 Score = 37.7 bits (86), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 22/112 (19%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD-----H 62
           ENQNS    ++ +I+G+++ VL+ L       + +I+ DPPYN   +G +Y+ D      
Sbjct: 92  ENQNS----ENILIQGDNLEVLKHLKHAYKNQIKMIYIDPPYNTASDGFVYQDDRKFTPQ 147

Query: 63  SLVDAVTD----------SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
            LV+   D          +  K +S  A+  F    L   R +L+ +G +++
Sbjct: 148 QLVELGMDLEEAERVLEFTAKKSNSHSAWLTFMYPRLYIARELLRDDGVIFI 199


>gi|135253|sp|P12364|T3MO_ECOLX RecName: Full=Type III restriction-modification system EcoP15I
           enzyme mod; Short=M.EcoP15I; AltName: Full=EcoP15I
           methyltransferase
 gi|42237|emb|CAA29616.1| unnamed protein product [Escherichia coli]
          Length = 645

 Score = 37.7 bits (86), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 27/146 (18%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDH----- 62
           EN+NS    +  +IKG+++ VL+ +    A+ V +I+ DPPYN   +G +Y  D      
Sbjct: 89  ENKNS----QHLLIKGDNLEVLKHMVNAYAEKVKMIYIDPPYNTGKDGFVYNDDRKFTPE 144

Query: 63  ---SLVDAVTDSWDKF--------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
               L     D   +         SS  A+  F    L   R +++ +GT++ I   HN 
Sbjct: 145 QLSELAGIDLDQAKRILEFTTKGSSSHSAWLTFIYPRLYIARELMREDGTIF-ISIDHNE 203

Query: 112 FRIGTMLQNLNFWILN---DIVWRKS 134
           F    ++ +  F   N   D+VW+ +
Sbjct: 204 FSQLKLVCDEIFGEQNHVGDLVWKNA 229


>gi|145639457|ref|ZP_01795062.1| putative type III restriction-modification system methyltransferase
           [Haemophilus influenzae PittII]
 gi|145271504|gb|EDK11416.1| putative type III restriction-modification system methyltransferase
           [Haemophilus influenzae PittII]
 gi|309751703|gb|ADO81687.1| Probable Type III restriction-modification system enzyme Res
           [Haemophilus influenzae R2866]
          Length = 548

 Score = 37.7 bits (86), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 22/112 (19%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD-----H 62
           ENQNS    ++ +I+G+++ VL+ L       + +I+ DPPYN   +G +Y+ D      
Sbjct: 12  ENQNS----ENVLIQGDNLEVLKHLKHAYKNQIKMIYIDPPYNTGSDGFVYQDDRKFTPQ 67

Query: 63  SLVDAVTD----------SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
            LV+   D          +  K +S  A+  F    L   R +L+ +G +++
Sbjct: 68  QLVELGMDLEEAERVLEFTAKKSNSHSAWLTFMYPRLYIARELLRDDGVIFI 119


>gi|320101128|ref|YP_004176720.1| DNA methylase N-4/N-6 domain-containing protein [Desulfurococcus
           mucosus DSM 2162]
 gi|319753480|gb|ADV65238.1| DNA methylase N-4/N-6 domain protein [Desulfurococcus mucosus DSM
           2162]
          Length = 319

 Score = 37.7 bits (86), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 32/57 (56%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           P  +   +++  T+PG+I+LDP  GSGT+   A  L R  I +++  + + +   R+
Sbjct: 71  PPQMARALILGYTEPGEIVLDPMAGSGTTCIEAVLLGRKCIAVDINYNAVMLTHHRL 127


>gi|319897862|ref|YP_004136059.1| type iii restriction-modification system methyltransferase
           [Haemophilus influenzae F3031]
 gi|317433368|emb|CBY81748.1| putative type III restriction-modification system methyltransferase
           [Haemophilus influenzae F3031]
          Length = 626

 Score = 37.7 bits (86), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 22/112 (19%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD-----H 62
           ENQNS    ++ +I+G+++ VL+ L       + +I+ DPPYN   +G +Y+ D      
Sbjct: 92  ENQNS----ENVLIQGDNLEVLKHLKHAYKNQIKMIYIDPPYNTGSDGFVYQDDRKFTPQ 147

Query: 63  SLVDAVTD----------SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
            LV+   D          +  K +S  A+  F    L   R +L+ +G +++
Sbjct: 148 QLVELGMDLEEAERVLEFTAKKSNSHSAWLTFMYPRLYIARELLRDDGVIFI 199


>gi|293476569|ref|ZP_06664977.1| N4/N6-methyltransferase [Escherichia coli B088]
 gi|291321022|gb|EFE60464.1| N4/N6-methyltransferase [Escherichia coli B088]
          Length = 644

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 59/146 (40%), Gaps = 23/146 (15%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLNGQLYRPDHSLV 65
           I++N + +F      I G++   L  L  K    +D +  DPPYN   +G LY+      
Sbjct: 65  IDDNVDGVF------INGDNYQALNLLKKKYNSVIDCVHIDPPYNTDTSGFLYK------ 112

Query: 66  DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
               +S+   S     D    + LL  + +L  NG  +     +   R+  + + L    
Sbjct: 113 ----NSFKHSSWLSMMD----SRLLFVKNLLSENGVFFCHIDENEYERLYLINKQLGLID 164

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHET 151
              I+W K NPM    G   Q+ + T
Sbjct: 165 AGTIIWDKRNPMNGGSGIAIQHEYTT 190


>gi|188997491|ref|YP_001931742.1| DNA methylase N-4/N-6 domain protein [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932558|gb|ACD67188.1| DNA methylase N-4/N-6 domain protein [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 385

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 26/45 (57%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           P  ++  ++   T PGD++ DP  GSGT+  V K+ RR  +  ++
Sbjct: 172 PAFIIYNLIYRYTYPGDLVCDPMAGSGTTIDVCKEERRRVVAFDI 216


>gi|209884695|ref|YP_002288552.1| DNA methylase N-4/N-6 domain protein [Oligotropha carboxidovorans
           OM5]
 gi|209872891|gb|ACI92687.1| DNA methylase N-4/N-6 domain protein [Oligotropha carboxidovorans
           OM5]
          Length = 856

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 31/64 (48%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L++  G +LH       ++ R +   T PG+ + DPF G  T    A  L+R  IG+E+ 
Sbjct: 763 LQHAKGRELHLCPLQFDIVDRAITQYTMPGETVFDPFGGLMTVPYRAIALKRRGIGVELS 822

Query: 255 QDYI 258
             Y 
Sbjct: 823 PSYF 826


>gi|308178020|ref|YP_003917426.1| site-specific DNA-methyltransferase (adenine specific)
           [Arthrobacter arilaitensis Re117]
 gi|307745483|emb|CBT76455.1| putative site-specific DNA-methyltransferase (adenine specific)
           [Arthrobacter arilaitensis Re117]
          Length = 296

 Score = 37.4 bits (85), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 7/95 (7%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           +++ +L      S+D I+ DPPYN       Y  D+   D      D +     + AF  
Sbjct: 60  HALEMLTYTHRHSIDAIYIDPPYNTGARDWKYDNDYVASD------DDYRH-SKWLAFME 112

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
             L  CR +++ + TL      H + R+G +L  L
Sbjct: 113 RRLKICRELMRSDATLVATIDEHEVNRLGVLLDQL 147


>gi|21323668|dbj|BAB98295.1| Adenine specific DNA methylase Mod [Corynebacterium glutamicum ATCC
           13032]
          Length = 280

 Score = 37.4 bits (85), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 7/95 (7%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           +++ +L      S+D I+ DPPYN       Y  D+   D      D +     + AF  
Sbjct: 44  HALEMLTYTHRHSIDAIYIDPPYNTGARDWKYDNDYVASD------DDYRH-SKWLAFME 96

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
             L  CR +++ + TL      H + R+G +L  L
Sbjct: 97  RRLKICRELMRSDATLVATIDEHEVNRLGVLLDQL 131


>gi|313668659|ref|YP_004048943.1| type iii restriction-modification system methyltransferase
           [Neisseria lactamica ST-640]
 gi|313006121|emb|CBN87582.1| putative type iii restriction-modification system methyltransferase
           [Neisseria lactamica 020-06]
          Length = 634

 Score = 37.4 bits (85), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 7/92 (7%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLR--- 245
           + S+ L +  G+ +    KP +L+ R+L ++S K   IILD F GSGT+     +L    
Sbjct: 385 AASKELESMIGKGIFTFPKPPSLIKRMLKIASNKKDSIILDFFSGSGTTAHAVMQLNAED 444

Query: 246 ---RSFIGIEMKQDYIDIATKRIASVQPLGNI 274
              R FI +++ ++  + +  R A    +  I
Sbjct: 445 GGSRRFICVQLPEETDEKSEARKAGFNTIAEI 476


>gi|309379437|emb|CBX22004.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 537

 Score = 37.4 bits (85), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 7/92 (7%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLR--- 245
           + S+ L +  G+ +    KP +L+ R+L ++S K   IILD F GSGT+     +L    
Sbjct: 288 AASKELESMIGKGIFTFPKPPSLIKRMLKIASNKKDSIILDFFSGSGTTAHAVMQLNAED 347

Query: 246 ---RSFIGIEMKQDYIDIATKRIASVQPLGNI 274
              R FI +++ ++  + +  R A    +  I
Sbjct: 348 GGSRRFICVQLPEETDEKSEARKAGFDTIAEI 379


>gi|269214310|ref|ZP_05986314.2| type III restriction-modification system methyltransferase
           [Neisseria lactamica ATCC 23970]
 gi|269210190|gb|EEZ76645.1| type III restriction-modification system methyltransferase
           [Neisseria lactamica ATCC 23970]
          Length = 658

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 7/92 (7%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLR--- 245
           + S+ L +  G+ +    KP +L+ R+L ++S K   IILD F GSGT+     +L    
Sbjct: 409 AASKELESMIGKGIFTFPKPPSLIKRMLKIASNKKDSIILDFFSGSGTTAHAVMQLNAED 468

Query: 246 ---RSFIGIEMKQDYIDIATKRIASVQPLGNI 274
              R FI +++ ++  + +  R A    +  I
Sbjct: 469 GGSRRFICVQLPEETDEKSEARKAGFDTIAEI 500


>gi|261403293|ref|YP_003247517.1| DNA methylase N-4/N-6 domain protein [Methanocaldococcus vulcanius
           M7]
 gi|261370286|gb|ACX73035.1| DNA methylase N-4/N-6 domain protein [Methanocaldococcus vulcanius
           M7]
          Length = 530

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 4/120 (3%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP--EALLSRILVSSTKPGD 225
           ++  K   E +  + +W +     SE+ R K    +HP +      L    L      GD
Sbjct: 72  FEKRKEWEEKLGFKLNWDLAFDLLSEKERTKHVHGIHPYKGKFIPQLTEYFLKRHFNVGD 131

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA--SVQPLGNIELTVLTGKR 283
           I++DPF GSGT+     ++  + IGI++      IA  ++    +Q L  I L +L   R
Sbjct: 132 IVIDPFMGSGTTLVQCMEMGINSIGIDISPFNCLIAEVKLQKYDIQKLKKILLDMLNKTR 191


>gi|119384800|ref|YP_915856.1| nuclease [Paracoccus denitrificans PD1222]
 gi|119374567|gb|ABL70160.1| ParB domain protein nuclease [Paracoccus denitrificans PD1222]
          Length = 463

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 49/248 (19%), Positives = 88/248 (35%), Gaps = 27/248 (10%)

Query: 22  KIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRP-DHSLVDAVTDSWDKFS- 76
           +++ G+S S   V   +  +   L   DPPY +  +G  +   +     +   +WD  S 
Sbjct: 182 RLLCGDSTSHDDVRRLMNGERAVLFATDPPYLVDYDGSNHPTRNKDWSTSYGTTWDDSSQ 241

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E YD F  A   A    +  N   +   +      +    +    ++   I+W K   
Sbjct: 242 GAELYDGFIAA---ALAEAITENAAWYCWHASRRQAMLEACWEKAGAFVHQQIIWVKDRG 298

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +       +++    + W  P+   K              D  + S W +P  +  ER  
Sbjct: 299 VLTRSHYLWKHEPCLMGWRRPNRPPK------------VADQTLPSTWEMPSFARDER-- 344

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                  HPT KP       +      G +  +PF GSG+     +   R    +E+   
Sbjct: 345 -----PDHPTPKPLDAFGIPMRQHVARGGLCYEPFCGSGSQIMAGEVNGRRVFAMEISPA 399

Query: 257 YIDIATKR 264
           Y+D+A +R
Sbjct: 400 YVDVAVER 407


>gi|163797174|ref|ZP_02191128.1| ParB domain protein nuclease [alpha proteobacterium BAL199]
 gi|159177469|gb|EDP62023.1| ParB domain protein nuclease [alpha proteobacterium BAL199]
          Length = 439

 Score = 37.4 bits (85), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 7/88 (7%)

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
           D  + S W +P  +  ER         HPT KP       +      G +  +PF GSG+
Sbjct: 322 DETLASTWELPSFAKDER-------PDHPTPKPLDAFGIPMRQHVARGGLCYEPFSGSGS 374

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKR 264
                +   R    +E+   Y+D+A +R
Sbjct: 375 QIMAGEANGRRVFAMEISPAYVDVAVER 402


>gi|37525858|ref|NP_929202.1| hypothetical protein plu1935 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36785287|emb|CAE14228.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 695

 Score = 37.4 bits (85), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           G ++LDPF GSGT+   A KL  S IG ++      + T+ +ASV
Sbjct: 70  GKVVLDPFMGSGTTLGEAAKLGASIIGCDVNPVSTFLVTQAMASV 114


>gi|325973677|ref|YP_004250741.1| DNA methylase N-4/N-6 domain-containing protein [Mycoplasma suis
           str. Illinois]
 gi|323652279|gb|ADX98361.1| DNA methylase N-4/N-6 domain-containing protein [Mycoplasma suis
           str. Illinois]
          Length = 245

 Score = 37.4 bits (85), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV--QPLGN 273
           IL+  +  GD++LD F G GT+   AK L R+ IG+++ ++ +    ++ +     P G 
Sbjct: 43  ILLRYSSEGDLVLDQFAGGGTTLVEAKLLNRNIIGVDVNEESLKRCKEKTSFEFNGPQGQ 102

Query: 274 IELT 277
           +E+ 
Sbjct: 103 VEIV 106


>gi|145629607|ref|ZP_01785404.1| putative type III restriction-modification system methyltransferase
           [Haemophilus influenzae 22.1-21]
 gi|144978118|gb|EDJ87891.1| putative type III restriction-modification system methyltransferase
           [Haemophilus influenzae 22.1-21]
          Length = 351

 Score = 37.4 bits (85), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 22/112 (19%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD-----H 62
           ENQNS    ++ +I+G+++ VL+ L       + +I+ DPPYN   +G +Y+ D      
Sbjct: 92  ENQNS----ENVLIQGDNLEVLKHLKHAYKNQIKMIYIDPPYNTGSDGFVYQDDRKFTPQ 147

Query: 63  SLVDAVTD----------SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
            LV+   D          +  K +S  A+  F    L   R +L+ +G +++
Sbjct: 148 QLVELGMDLEEAERVLEFTAKKSNSHSAWLTFMYPRLYIARELLRDDGVIFI 199


>gi|171316876|ref|ZP_02906085.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia ambifaria MEX-5]
 gi|171097957|gb|EDT42775.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia ambifaria MEX-5]
          Length = 668

 Score = 37.4 bits (85), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 69/162 (42%), Gaps = 34/162 (20%)

Query: 19  WKDK---IIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQLYRPD-------HSLV 65
           W D    +I+G+++ V   L K  A  V L++ DPPYN         PD       H L 
Sbjct: 94  WDDTRHLLIEGDNLDVMKLLHKSYAGKVKLVYIDPPYN--TGSDFVYPDDFSDSIRHYL- 150

Query: 66  DAVTDSWD----KFSSFEAYDAFTRAW-------LLACRRVLKPNGTLWVIGSYHNIFRI 114
            A+T   D    + ++ EA   F   W       L     +L   G + V    H +  +
Sbjct: 151 -AMTGQTDGGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSDEGLIAVHIDEHEVHAL 209

Query: 115 GTMLQNLNFWILNDI---VWRKSNPMPNFRGRRFQNAHETLI 153
             ML+ + F   N++   VW K NP  + RG  +Q  HE+L+
Sbjct: 210 VLMLREI-FGEENELGVAVWDKRNPKGDARGVAYQ--HESLV 248


>gi|221214549|ref|ZP_03587519.1| type III DNA modification methyltransferase [Burkholderia
           multivorans CGD1]
 gi|221165439|gb|EED97915.1| type III DNA modification methyltransferase [Burkholderia
           multivorans CGD1]
          Length = 672

 Score = 37.4 bits (85), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 28/159 (17%)

Query: 19  WKDK---IIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS--------L 64
           W D    +I+G+++ V   L K  A  V L++ DPPYN   N  +Y  D S        +
Sbjct: 98  WDDTRHLMIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTG-NDFVYADDFSDSIRHYLAM 156

Query: 65  VDAVTDSWDKFSSFEAYDAFTRAW-------LLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
                    + ++ EA   F   W       L     +L   G + V    H +  +  M
Sbjct: 157 TGQTEGGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSEEGLIVVHIDEHEVHALVLM 216

Query: 118 LQNLNFWILNDI---VWRKSNPMPNFRGRRFQNAHETLI 153
           L+ + F   N++   VW K NP  + RG  +Q  HE+L+
Sbjct: 217 LREI-FGEENELGVAVWDKRNPKGDARGIAYQ--HESLV 252


>gi|124008287|ref|ZP_01692983.1| site-specific DNA-methyltransferase [Microscilla marina ATCC 23134]
 gi|123986236|gb|EAY26065.1| site-specific DNA-methyltransferase [Microscilla marina ATCC 23134]
          Length = 678

 Score = 37.4 bits (85), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 74/188 (39%), Gaps = 24/188 (12%)

Query: 23  IIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK----- 74
            I+G+++ VL+ L       + +I+ DPPYN    G  +  +    D ++   DK     
Sbjct: 92  FIQGDNLEVLKTLQKSYLGKIKMIYIDPPYN---TGNDFVYEDDFRDNLSHYIDKAGKNL 148

Query: 75  FSSFEAYDAFTRAWL-------LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL----NF 123
            S+ +    F   WL          + +LK +G ++V    H +  +  ++  +    NF
Sbjct: 149 HSNKKDSGRFHATWLNFMYPRLKIAKSLLKDDGAIFVSIDDHEVHNLRALMNEIFGEENF 208

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
             +  ++W++     N       + HE L+  S S   K    + D  K  N D   R  
Sbjct: 209 MGI--LLWKRRQNADNRNQSNVSSDHEYLLLYSKSENTKFLGKSIDLSKYKNPDNDPRGP 266

Query: 184 WLIPICSG 191
           W     SG
Sbjct: 267 WASIDLSG 274


>gi|298735507|ref|YP_003728028.1| adenine-specific DNA-methyltransferase [Helicobacter pylori B8]
 gi|298354692|emb|CBI65564.1| site-specific DNA-methyltransferase (adenine-specific)
           [Helicobacter pylori B8]
          Length = 486

 Score = 37.4 bits (85), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 24/38 (63%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
           +K+    KP  L+SR++  ST   DIILD F GSGT+ 
Sbjct: 427 QKIFNNPKPTKLISRLIELSTNESDIILDFFAGSGTTA 464


>gi|149194672|ref|ZP_01871767.1| hypothetical protein CMTB2_04807 [Caminibacter mediatlanticus TB-2]
 gi|149135095|gb|EDM23576.1| hypothetical protein CMTB2_04807 [Caminibacter mediatlanticus TB-2]
          Length = 683

 Score = 37.4 bits (85), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 19/101 (18%)

Query: 23  IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLV-------------- 65
           +IKG+++ VL+ L       + +I+ DPPYN + N  +Y+ D                  
Sbjct: 92  LIKGDNLEVLKHLVNAYENEIKMIYIDPPYNTENNDFVYQDDRKFTPEELSKLAGIDIEK 151

Query: 66  -DAVTDSWD-KFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
              + D  D K +S  A+  F    L   RR+L+ +G +++
Sbjct: 152 AKRILDFLDSKSNSHSAWLTFMYPRLYIARRLLRKDGVIFI 192


>gi|121610646|ref|YP_998453.1| DNA modification methylase-like protein [Verminephrobacter
          eiseniae EF01-2]
 gi|121555286|gb|ABM59435.1| DNA modification methylase-like protein [Verminephrobacter
          eiseniae EF01-2]
          Length = 131

 Score = 37.4 bits (85), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
          +I+ GN ++VL  LP ++VD +  DPPY +       R    + +   DSW
Sbjct: 3  RIVLGNCLTVLPTLPDRAVDFVLTDPPYLVDYQD---REGRRIANDTDDSW 50


>gi|330836523|ref|YP_004411164.1| DNA methylase N-4/N-6 domain-containing protein [Spirochaeta
           coccoides DSM 17374]
 gi|329748426|gb|AEC01782.1| DNA methylase N-4/N-6 domain protein [Spirochaeta coccoides DSM
           17374]
          Length = 245

 Score = 37.4 bits (85), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP-LGNI 274
           IL+  +  GD +LD F G GT+   AK L R+ IGI++  D ++    +I    P  G +
Sbjct: 46  ILLRYSGEGDWVLDQFVGGGTTLVEAKLLNRNIIGIDVNPDALNRCKAKIDFECPNAGTV 105

Query: 275 EL 276
           +L
Sbjct: 106 KL 107


>gi|221207705|ref|ZP_03580713.1| type III DNA modification methyltransferase [Burkholderia
           multivorans CGD2]
 gi|221172551|gb|EEE04990.1| type III DNA modification methyltransferase [Burkholderia
           multivorans CGD2]
          Length = 668

 Score = 37.4 bits (85), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 28/159 (17%)

Query: 19  WKDK---IIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS--------L 64
           W D    +I+G+++ V   L K  A  V L++ DPPYN   N  +Y  D S        +
Sbjct: 94  WDDTRHLMIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTG-NDFVYADDFSDSIRHYLAM 152

Query: 65  VDAVTDSWDKFSSFEAYDAFTRAW-------LLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
                    + ++ EA   F   W       L     +L   G + V    H +  +  M
Sbjct: 153 TGQTEGGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSEEGLIVVHIDEHEVHALVLM 212

Query: 118 LQNLNFWILNDI---VWRKSNPMPNFRGRRFQNAHETLI 153
           L+ + F   N++   VW K NP  + RG  +Q  HE+L+
Sbjct: 213 LREI-FGEENELGVAVWDKRNPKGDARGIAYQ--HESLV 248


>gi|308182750|ref|YP_003926877.1| modification methylase MjaII [Helicobacter pylori PeCan4]
 gi|308064935|gb|ADO06827.1| modification methylase MjaII [Helicobacter pylori PeCan4]
          Length = 522

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 24/32 (75%)

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           K GDI+LD F GSGT+ AVA +L  + +G+E+
Sbjct: 124 KKGDIVLDLFCGSGTTLAVANELGLNAVGLEL 155


>gi|239831821|ref|ZP_04680150.1| Protein-L-isoaspartate O-methyltransferase [Ochrobactrum
           intermedium LMG 3301]
 gi|239824088|gb|EEQ95656.1| Protein-L-isoaspartate O-methyltransferase [Ochrobactrum
           intermedium LMG 3301]
          Length = 222

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 3/90 (3%)

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           ++L   +G++     +P      + ++S K  D++LD   G+G S A+  KL  S IG+E
Sbjct: 53  DQLLESEGKQPRYLMEPSPFAKLVQLASIKNTDVVLDVGCGTGYSAAILSKLAGSVIGLE 112

Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLTGK 282
                   AT R+A    LG   + +++G+
Sbjct: 113 SDSVLSAAATARLAE---LGYDNVVIVSGE 139


>gi|295091228|emb|CBK77335.1| Adenine specific DNA methylase Mod [Clostridium cf. saccharolyticum
           K10]
          Length = 657

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 16/73 (21%)

Query: 199 DGEKLHPTQ----------KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL---- 244
           D  K H TQ          KP +LL  ++  STK GD ILD F GS T+     +L    
Sbjct: 408 DNSKKHLTQLFDSNVFDYSKPTSLLKALVQYSTKEGDTILDFFSGSATTAHAVMQLNAED 467

Query: 245 --RRSFIGIEMKQ 255
              R FI +++ +
Sbjct: 468 VGHRKFIMVQLPE 480


>gi|157158703|ref|YP_001465832.1| N4/N6-methyltransferase family protein [Escherichia coli E24377A]
 gi|157080733|gb|ABV20441.1| N4/N6-methyltransferase family protein [Escherichia coli E24377A]
          Length = 1040

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 59/146 (40%), Gaps = 23/146 (15%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLNGQLYRPDHSLV 65
           I++N + +F      I G++   L  L  K    +D +  DPPYN   +G LY+      
Sbjct: 461 IDDNVDGVF------INGDNYQALNLLKKKYNSVIDCVHIDPPYNTDTSGFLYK------ 508

Query: 66  DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
               +S+   S     D    + LL  + +L  NG  +     +   R+  + + L    
Sbjct: 509 ----NSFKHSSWLSMMD----SRLLFVKNLLSENGVFFCHIDENEYERLYLINKQLGLID 560

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHET 151
              I+W K NPM    G   Q+ + T
Sbjct: 561 AGTIIWDKRNPMNGGSGIAIQHEYTT 586


>gi|325990121|ref|YP_004249820.1| DNA methylase [Mycoplasma suis KI3806]
 gi|323575206|emb|CBZ40871.1| DNA methylase [Mycoplasma suis]
          Length = 253

 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV--QPLGN 273
           IL+  +  GD++LD F G GT+   AK L R+ IG+++ ++ +    ++ +     P G 
Sbjct: 51  ILLRYSSEGDLVLDQFAGGGTTLVEAKLLNRNIIGVDVNEESLKRCREKTSFEFNGPKGQ 110

Query: 274 IELT 277
           +E+ 
Sbjct: 111 VEIV 114


>gi|189348934|ref|YP_001944562.1| adenine-specific DNA methyltransferase [Burkholderia multivorans
           ATCC 17616]
 gi|189332956|dbj|BAG42026.1| adenine-specific DNA methyltransferase [Burkholderia multivorans
           ATCC 17616]
          Length = 668

 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 28/159 (17%)

Query: 19  WKDK---IIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS--------L 64
           W D    +I+G+++ V   L K  A  V L++ DPPYN   N  +Y  D S        +
Sbjct: 94  WDDTRHLMIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTG-NDFVYADDFSDSIRHYLAM 152

Query: 65  VDAVTDSWDKFSSFEAYDAFTRAW-------LLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
                    + ++ EA   F   W       L     +L   G + V    H +  +  M
Sbjct: 153 TGQTEGGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSEEGLIVVHIDEHEVHALVLM 212

Query: 118 LQNLNFWILNDI---VWRKSNPMPNFRGRRFQNAHETLI 153
           L+ + F   N++   VW K NP  + RG  +Q  HE+L+
Sbjct: 213 LREI-FGEENELGVAVWDKRNPKGDARGIAYQ--HESLV 248


>gi|241889993|ref|ZP_04777291.1| modification methylase RsrI [Gemella haemolysans ATCC 10379]
 gi|329767391|ref|ZP_08258916.1| hypothetical protein HMPREF0428_00613 [Gemella haemolysans M341]
 gi|241863615|gb|EER67999.1| modification methylase RsrI [Gemella haemolysans ATCC 10379]
 gi|328836080|gb|EGF85771.1| hypothetical protein HMPREF0428_00613 [Gemella haemolysans M341]
          Length = 84

 Score = 37.0 bits (84), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 2/37 (5%)

Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ--LNGQ 56
          +II G  I  L KL + +VDLI  DPPYN+   +NG+
Sbjct: 3  EIINGECIEELRKLDSSTVDLIITDPPYNIANFMNGR 39


>gi|328545380|ref|YP_004305489.1| ParB domain protein nuclease [polymorphum gilvum SL003B-26A1]
 gi|326415122|gb|ADZ72185.1| ParB domain protein nuclease [Polymorphum gilvum SL003B-26A1]
          Length = 454

 Score = 37.0 bits (84), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 29/67 (43%)

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           KD    HPT KP       +      G +  +PF GSG+     +   R    +E+   Y
Sbjct: 339 KDDRPDHPTPKPLDAFGIPMRQHVARGGLCYEPFSGSGSQIMAGEANGRRVFAMEISPAY 398

Query: 258 IDIATKR 264
           +D+A +R
Sbjct: 399 VDVAVER 405


>gi|12232628|sp|P70986|MTB1_BACST RecName: Full=Modification methylase BsoBI; Short=M.BsoBI; AltName:
           Full=N(4)- cytosine-specific methyltransferase BsoBI
 gi|2113827|emb|CAA66933.1| BsoBI methylase [Geobacillus stearothermophilus]
          Length = 509

 Score = 37.0 bits (84), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 17/30 (56%), Positives = 21/30 (70%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           GD ILDPF GSGT+   AK L  + IGI++
Sbjct: 101 GDTILDPFLGSGTTSLTAKMLGINSIGIDI 130


>gi|91791191|ref|YP_552141.1| DNA methylase N-4/N-6 [Polaromonas sp. JS666]
 gi|91701072|gb|ABE47243.1| DNA methylase N-4/N-6 [Polaromonas sp. JS666]
          Length = 355

 Score = 37.0 bits (84), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 3/80 (3%)

Query: 189 CSGSERLR---NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           C   + +R   N++G   H    P AL   ++   ++ G +++DPF G  T+   A+   
Sbjct: 262 CRSQDEVRKFVNREGLPNHGATFPLALAKFLVEYLSEAGQLVVDPFSGWFTTALAAELTG 321

Query: 246 RSFIGIEMKQDYIDIATKRI 265
           R +IG E    YI+ A +R 
Sbjct: 322 RRWIGCEKMLQYIEGARRRF 341


>gi|158423142|ref|YP_001524434.1| hypothetical protein AZC_1518 [Azorhizobium caulinodans ORS 571]
 gi|158330031|dbj|BAF87516.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571]
          Length = 284

 Score = 37.0 bits (84), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 10/116 (8%)

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
           P   L D   D    +S F   +A   AWL+  RR+L+P G  W+  + H+   +  M  
Sbjct: 147 PSLPLPDNSVDIVSAYSVFTHIEALETAWLMELRRILRPGGVAWI--TVHSELTLQDMTT 204

Query: 120 NLNFW---ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
           +   W   + +     K +   NF G R       L W S    A    +  D LK
Sbjct: 205 DWPLWNPTMSHPEAATKLDAQRNFVGDRM-----VLRWHSDRSYASNVFYKLDYLK 255


>gi|298290021|ref|YP_003691960.1| DNA methylase N-4/N-6 domain protein [Starkeya novella DSM 506]
 gi|296926532|gb|ADH87341.1| DNA methylase N-4/N-6 domain protein [Starkeya novella DSM 506]
          Length = 499

 Score = 37.0 bits (84), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPT KP  L+  ++   T  G  +LDPF G+GT+G  A +   + + IE    Y     +
Sbjct: 396 HPTVKPVDLMQWLVRLVTAKGGTVLDPFAGTGTTGEAAWREGCNAVLIERNPPYQADIRR 455

Query: 264 RIA 266
           R+A
Sbjct: 456 RMA 458


>gi|283853715|ref|ZP_06370944.1| phage DNA methylase [Desulfovibrio sp. FW1012B]
 gi|283570893|gb|EFC18924.1| phage DNA methylase [Desulfovibrio sp. FW1012B]
          Length = 190

 Score = 37.0 bits (84), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 2/49 (4%)

Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYN--LQLNGQLYRPDHSLVDAV 68
          K+I  ++IS L+KL   S  +I+ADPPY+   +   ++Y+ D+SL D +
Sbjct: 32 KLINDDAISALQKLKLDSETVIYADPPYHPLTRRRRKVYKHDYSLNDHI 80


>gi|260774789|ref|ZP_05883691.1| site-specific DNA-methyltransferase (adenine-specific) [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260609214|gb|EEX35369.1| site-specific DNA-methyltransferase (adenine-specific) [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 592

 Score = 37.0 bits (84), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 9/84 (10%)

Query: 194 RLRNKDGEKLHPTQKPEALLSRIL--VSSTKPGDIILDPFFGSGTSGAVAKKL------R 245
            L N  GEK  P  K + ++S ++  V+      +ILD F GSGT+     KL       
Sbjct: 355 ELMNIFGEKPFPNPKDKDVISSLIKYVTGYDKNCLILDSFAGSGTTAHAVLKLNHQDNGN 414

Query: 246 RSFIGIEMKQDYID-IATKRIASV 268
           R+FI IEM     + +  KRI SV
Sbjct: 415 RNFITIEMDDSVANHVTIKRIKSV 438


>gi|167751319|ref|ZP_02423446.1| hypothetical protein EUBSIR_02305 [Eubacterium siraeum DSM 15702]
 gi|167655826|gb|EDR99955.1| hypothetical protein EUBSIR_02305 [Eubacterium siraeum DSM 15702]
          Length = 249

 Score = 37.0 bits (84), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 4/52 (7%)

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           I++  ++ GD++LD F G GT+   AK L R  IGI++     D+A +R + 
Sbjct: 49  IILRYSQEGDLVLDQFAGGGTTLVEAKLLNRDIIGIDIN----DVALERCSE 96


>gi|308183573|ref|YP_003927700.1| putative RNA methylase [Helicobacter pylori PeCan4]
 gi|308065758|gb|ADO07650.1| putative RNA methylase [Helicobacter pylori PeCan4]
          Length = 379

 Score = 37.0 bits (84), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 30/62 (48%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HP+ KP  L+  I+   TK  +++ D F G G +   +    R  IG ++   Y DI 
Sbjct: 143 KEHPSPKPPQLMRDIISFFTKENELVFDYFAGVGGTLLGSSLCNRKAIGFDLSDRYKDIY 202

Query: 262 TK 263
            K
Sbjct: 203 MK 204


>gi|58865225|emb|CAI52508.1| DNA-methyltransferase [Geobacillus stearothermophilus]
          Length = 381

 Score = 37.0 bits (84), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 30/58 (51%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           K+HP+ KP  L   I+   TK  + +LD F G G +   A    R  IGI++   YI+
Sbjct: 143 KVHPSPKPPQLTKEIISFFTKENEWVLDYFMGVGGTLLGASLCNRRAIGIDLNGFYIE 200


>gi|161506656|ref|YP_001576604.1| DNA methylase [Lactobacillus helveticus DPC 4571]
 gi|160347645|gb|ABX26319.1| DNA methylase [Lactobacillus helveticus DPC 4571]
          Length = 608

 Score = 37.0 bits (84), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 8/90 (8%)

Query: 190 SGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA------VAK 242
           SG +RL +  G K    T KP  L+ R++ ++TK  D+I+D F GS T+        +  
Sbjct: 365 SGKKRLNDLLGNKHGFDTVKPVPLIQRLIAATTKDNDLIMDFFAGSSTTAEAVLQQNLKD 424

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
              R +I +++  D  +      +SV  LG
Sbjct: 425 NFNRKYILVQL-NDKQESVNSSFSSVTELG 453


>gi|291294974|ref|YP_003506372.1| Site-specific DNA-methyltransferase (adenine-specific) [Meiothermus
           ruber DSM 1279]
 gi|290469933|gb|ADD27352.1| Site-specific DNA-methyltransferase (adenine-specific) [Meiothermus
           ruber DSM 1279]
          Length = 629

 Score = 37.0 bits (84), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 13/66 (19%)

Query: 206 TQKPEALLSRILVSSTKP--GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           T KP  LL R+L  +T+P  GDI+LD F GSGT G            +EM Q+  D   +
Sbjct: 395 TPKPVRLLKRLLQLATEPDAGDIVLDFFAGSGTLGQAV---------LEMNQE--DGGDR 443

Query: 264 RIASVQ 269
           R   VQ
Sbjct: 444 RFVLVQ 449


>gi|221201789|ref|ZP_03574826.1| type III DNA modification methyltransferase [Burkholderia
           multivorans CGD2M]
 gi|221178209|gb|EEE10619.1| type III DNA modification methyltransferase [Burkholderia
           multivorans CGD2M]
          Length = 840

 Score = 37.0 bits (84), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 28/159 (17%)

Query: 19  WKDK---IIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS--------L 64
           W D    +I+G+++ V   L K  A  V L++ DPPYN   N  +Y  D S        +
Sbjct: 266 WDDTRHLMIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTG-NDFVYADDFSDSIRHYLAM 324

Query: 65  VDAVTDSWDKFSSFEAYDAFTRAW-------LLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
                    + ++ EA   F   W       L     +L   G + V    H +  +  M
Sbjct: 325 TGQTEGGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSEEGLIVVHIDEHEVHALVLM 384

Query: 118 LQNLNFWILNDI---VWRKSNPMPNFRGRRFQNAHETLI 153
           L+ + F   N++   VW K NP  + RG  +Q  HE+L+
Sbjct: 385 LREI-FGEENELGVAVWDKRNPKGDARGIAYQ--HESLV 420


>gi|161523209|ref|YP_001578221.1| adenine-specific DNA-methyltransferase [Burkholderia multivorans
           ATCC 17616]
 gi|160340638|gb|ABX13724.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia multivorans ATCC 17616]
          Length = 688

 Score = 37.0 bits (84), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 28/159 (17%)

Query: 19  WKDK---IIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS--------L 64
           W D    +I+G+++ V   L K  A  V L++ DPPYN   N  +Y  D S        +
Sbjct: 114 WDDTRHLMIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTG-NDFVYADDFSDSIRHYLAM 172

Query: 65  VDAVTDSWDKFSSFEAYDAFTRAW-------LLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
                    + ++ EA   F   W       L     +L   G + V    H +  +  M
Sbjct: 173 TGQTEGGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSEEGLIVVHIDEHEVHALVLM 232

Query: 118 LQNLNFWILNDI---VWRKSNPMPNFRGRRFQNAHETLI 153
           L+ + F   N++   VW K NP  + RG  +Q  HE+L+
Sbjct: 233 LREI-FGEENELGVAVWDKRNPKGDARGIAYQ--HESLV 268


>gi|148264781|ref|YP_001231487.1| DNA methylase N-4/N-6 domain-containing protein [Geobacter
           uraniireducens Rf4]
 gi|146398281|gb|ABQ26914.1| DNA methylase N-4/N-6 domain protein [Geobacter uraniireducens Rf4]
          Length = 609

 Score = 37.0 bits (84), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 6/69 (8%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSG----AVAKKL--RRSFIGIEMKQDYID 259
           T KP  LLSRIL  +T    IILD F GSGT+     A  +K    R F+ IE ++    
Sbjct: 335 TPKPTRLLSRILEIATDENSIILDSFAGSGTTAHAVLAANQKDGGNRRFMLIECEEYADT 394

Query: 260 IATKRIASV 268
           +  +R+  V
Sbjct: 395 LTAERVRRV 403


>gi|78064690|ref|YP_367459.1| site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia sp. 383]
 gi|77965435|gb|ABB06815.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia sp. 383]
          Length = 672

 Score = 36.6 bits (83), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 65/160 (40%), Gaps = 30/160 (18%)

Query: 19  WKDK---IIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQLYRPDH---------S 63
           W D    +I+G+++ V   L K  A  V L++ DPPYN         PD          +
Sbjct: 98  WDDTRHLVIEGDNLDVMKLLHKSYAGKVKLVYIDPPYN--TGSDFVYPDDFSDSIRHYLA 155

Query: 64  LVDAVTDSWDKFSSFEAYDAFTRAW-------LLACRRVLKPNGTLWVIGSYHNIFRIGT 116
           +         + ++ EA   F   W       L     +L   G + V    H +  +  
Sbjct: 156 MTGQTQGGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSDEGLIAVHIDEHEVHALVL 215

Query: 117 MLQNLNFWILNDI---VWRKSNPMPNFRGRRFQNAHETLI 153
           ML+ + F   N++   VW K NP  + RG  +Q  HE+L+
Sbjct: 216 MLREI-FGEENELGVAVWDKRNPKGDARGVAYQ--HESLV 252


>gi|332674241|gb|AEE71058.1| DNA (cytosine-5-)-methyltransferase domain protein [Helicobacter
           pylori 83]
          Length = 379

 Score = 36.6 bits (83), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 32/67 (47%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HP+ KP  L+  I+   TK  +++ D F G G +   +    R  IG ++   Y DI 
Sbjct: 143 KEHPSPKPPQLMRDIISFFTKENELVFDYFAGVGGTLLGSSLCNRKAIGFDLSDRYKDIY 202

Query: 262 TKRIASV 268
            K   S+
Sbjct: 203 MKANKSL 209


>gi|163796619|ref|ZP_02190578.1| ParB domain protein nuclease [alpha proteobacterium BAL199]
 gi|159178179|gb|EDP62724.1| ParB domain protein nuclease [alpha proteobacterium BAL199]
          Length = 437

 Score = 36.6 bits (83), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 7/88 (7%)

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
           D  + S W +P  +  ER         HPT KP       +      G +  +PF GSG+
Sbjct: 322 DETLASTWELPSFAKDER-------PDHPTPKPLDAFGIPMRQHVARGGLCYEPFSGSGS 374

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKR 264
                +   R    +E+   Y+D+A +R
Sbjct: 375 QIMAGEANGRRVYAMEISPAYVDVAIER 402


>gi|296536606|ref|ZP_06898684.1| DNA methylase N-4/N-6 [Roseomonas cervicalis ATCC 49957]
 gi|296263065|gb|EFH09612.1| DNA methylase N-4/N-6 [Roseomonas cervicalis ATCC 49957]
          Length = 630

 Score = 36.6 bits (83), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 2/39 (5%)

Query: 204 HPTQ-KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
           +PT+  PEA+ +  L   TKPGD +LD F GSGT+G  A
Sbjct: 57  YPTKISPEAI-ALFLAVHTKPGDTVLDTFGGSGTTGLAA 94


>gi|254448305|ref|ZP_05061767.1| adenine specific DNA methylase Mod [gamma proteobacterium HTCC5015]
 gi|198262172|gb|EDY86455.1| adenine specific DNA methylase Mod [gamma proteobacterium HTCC5015]
          Length = 706

 Score = 36.6 bits (83), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 11/138 (7%)

Query: 23  IIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +I G +   LE L       VD I+ DPPYN       Y  D+          +      
Sbjct: 142 VINGENFHALEALTYTHRGKVDAIYIDPPYNSGAKDWKYNNDYV-------EKEDLYRHS 194

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF-RIGTMLQNLNFWILNDIVWRKSNPMP 138
            + AF    L   + +L PN ++ ++      + R+G +L+ L      D+V    NP  
Sbjct: 195 KWLAFMERRLKVAKELLNPNNSILIVAIDDKEYARLGLLLEQLFPEARIDMVTTVINPRG 254

Query: 139 NFRGRRFQNAHETLIWAS 156
            +R  +F  + + + + +
Sbjct: 255 KYRAGQFARSEDYIYFVA 272


>gi|156743960|ref|YP_001434089.1| putative RNA methylase [Roseiflexus castenholzii DSM 13941]
 gi|156235288|gb|ABU60071.1| putative RNA methylase [Roseiflexus castenholzii DSM 13941]
          Length = 483

 Score = 36.6 bits (83), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 34/64 (53%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           P + P  L  + + + T PG+ +LDP  GSGT+   A  L R  IG ++    + +A  +
Sbjct: 52  PAKFPPQLPRKFIQALTLPGETVLDPMMGSGTTVLEAFLLGRRGIGFDIDPLAVMLAKAK 111

Query: 265 IASV 268
           ++ +
Sbjct: 112 VSPI 115


>gi|289675319|ref|ZP_06496209.1| DNA methylase N-4/N-6 [Pseudomonas syringae pv. syringae FF5]
          Length = 127

 Score = 36.6 bits (83), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 36/71 (50%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           P  L+   +++    G ++LDPF G+GT+  V+ +  R  I  E+  +Y  +A  RI + 
Sbjct: 50  PPDLIRPCILAGAPRGGVVLDPFGGAGTTSLVSMQEGRRSIICELNPEYAALARARIDAA 109

Query: 269 QPLGNIELTVL 279
              G  ++ V 
Sbjct: 110 WLDGAAQMDVF 120


>gi|10639461|emb|CAC11463.1| probable type II DNA modification enzyme (methyltransferase)
           [Thermoplasma acidophilum]
          Length = 323

 Score = 36.6 bits (83), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 28/39 (71%)

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           ++++  TK  + ++DPF GSGT+   AKKL R+ IGIE+
Sbjct: 113 QMMMRYTKRNEWVIDPFSGSGTTLIEAKKLGRNAIGIEI 151


>gi|291531628|emb|CBK97213.1| DNA methylase [Eubacterium siraeum 70/3]
          Length = 249

 Score = 36.6 bits (83), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 4/49 (8%)

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           I++  ++ GD++LD F G GT+   AK L R  IGI++     D+A +R
Sbjct: 49  IILRYSQEGDLVLDQFAGGGTTLVEAKLLNRDIIGIDIN----DVALER 93


>gi|296840789|ref|ZP_06899359.1| type III restriction-modification system StyLTI enzyme mod
           [Neisseria polysaccharea ATCC 43768]
 gi|296839951|gb|EFH23889.1| type III restriction-modification system StyLTI enzyme mod
           [Neisseria polysaccharea ATCC 43768]
          Length = 447

 Score = 36.6 bits (83), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 7/92 (7%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKL---- 244
           + S+ L +  G+ +    KP +L+ R+L ++S K   IILD F GSGT+     +L    
Sbjct: 198 AASKELESMIGKGIFTFPKPPSLIKRMLKIASNKKDSIILDFFTGSGTTAHAVMQLNAED 257

Query: 245 --RRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
              R +I +++ ++  + +  R A    +  I
Sbjct: 258 GGNRRYICVQLPEETDEKSEARKAGFDTIAEI 289


>gi|254246629|ref|ZP_04939950.1| Adenine specific DNA methylase Mod [Burkholderia cenocepacia PC184]
 gi|124871405|gb|EAY63121.1| Adenine specific DNA methylase Mod [Burkholderia cenocepacia PC184]
          Length = 672

 Score = 36.6 bits (83), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 69/160 (43%), Gaps = 30/160 (18%)

Query: 19  WKDK---IIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQLYRPD-------HSL- 64
           W D    +I+G+++ V   L K  A  V L++ DPPYN         PD       H L 
Sbjct: 98  WDDTRHLVIEGDNLDVMKLLHKSYAGKVKLVYIDPPYN--TGSDFVYPDDFSDSIRHYLA 155

Query: 65  VDAVTDSWDKFSS-FEAYDAFTRAW-------LLACRRVLKPNGTLWVIGSYHNIFRIGT 116
           +   T++  K S+  EA   F   W       L     +L   G + V    H +  +  
Sbjct: 156 MTGQTEAGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSDEGLIAVHIDEHEVHALVL 215

Query: 117 MLQNLNFWILNDI---VWRKSNPMPNFRGRRFQNAHETLI 153
           ML+ + F   N++   VW K NP  + RG  +Q  HE+L+
Sbjct: 216 MLREI-FGEENELGVAVWDKRNPKGDARGVAYQ--HESLV 252


>gi|300742633|ref|ZP_07072654.1| adenine specific DNA methylase Mod [Rothia dentocariosa M567]
 gi|300381818|gb|EFJ78380.1| adenine specific DNA methylase Mod [Rothia dentocariosa M567]
          Length = 653

 Score = 36.6 bits (83), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 6/73 (8%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIE 252
           DG     T KP  L+ RIL  +T    ++LD F GSGT+      L       R FI +E
Sbjct: 376 DGRVAFDTPKPTRLIERILAVATDENSLVLDSFAGSGTTAHALLNLNKADGGNRRFILVE 435

Query: 253 MKQDYIDIATKRI 265
           +      +  +R+
Sbjct: 436 LGDYAGSVTAERV 448


>gi|206561831|ref|YP_002232596.1| type III restriction-modification system methylase [Burkholderia
           cenocepacia J2315]
 gi|198037873|emb|CAR53817.1| type III restriction-modification system methylase [Burkholderia
           cenocepacia J2315]
          Length = 668

 Score = 36.6 bits (83), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 69/160 (43%), Gaps = 30/160 (18%)

Query: 19  WKDK---IIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQLYRPD-------HSL- 64
           W D    +I+G+++ V   L K  A  V L++ DPPYN         PD       H L 
Sbjct: 94  WDDTRHLVIEGDNLDVMKLLHKSYAGKVKLVYIDPPYN--TGSDFVYPDDFSDSIRHYLA 151

Query: 65  VDAVTDSWDKFSS-FEAYDAFTRAW-------LLACRRVLKPNGTLWVIGSYHNIFRIGT 116
           +   T++  K S+  EA   F   W       L     +L   G + V    H +  +  
Sbjct: 152 MTGQTEAGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSDEGLIAVHIDEHEVHALVL 211

Query: 117 MLQNLNFWILNDI---VWRKSNPMPNFRGRRFQNAHETLI 153
           ML+ + F   N++   VW K NP  + RG  +Q  HE+L+
Sbjct: 212 MLREI-FGEENELGVAVWDKRNPKGDARGVAYQ--HESLV 248


>gi|107021604|ref|YP_619931.1| site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia cenocepacia AU 1054]
 gi|116688052|ref|YP_833675.1| site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia cenocepacia HI2424]
 gi|105891793|gb|ABF74958.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia cenocepacia AU 1054]
 gi|116646141|gb|ABK06782.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia cenocepacia HI2424]
          Length = 672

 Score = 36.6 bits (83), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 69/160 (43%), Gaps = 30/160 (18%)

Query: 19  WKDK---IIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQLYRPD-------HSL- 64
           W D    +I+G+++ V   L K  A  V L++ DPPYN         PD       H L 
Sbjct: 98  WDDTRHLVIEGDNLDVMKLLHKSYAGKVKLVYIDPPYN--TGSDFVYPDDFSDSIRHYLA 155

Query: 65  VDAVTDSWDKFSS-FEAYDAFTRAW-------LLACRRVLKPNGTLWVIGSYHNIFRIGT 116
           +   T++  K S+  EA   F   W       L     +L   G + V    H +  +  
Sbjct: 156 MTGQTEAGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSDEGLIAVHIDEHEVHALVL 215

Query: 117 MLQNLNFWILNDI---VWRKSNPMPNFRGRRFQNAHETLI 153
           ML+ + F   N++   VW K NP  + RG  +Q  HE+L+
Sbjct: 216 MLREI-FGEENELGVAVWDKRNPKGDARGVAYQ--HESLV 252


>gi|148927601|ref|ZP_01811069.1| DNA methylase N-4/N-6 domain protein [candidate division TM7
           genomosp. GTL1]
 gi|147887050|gb|EDK72550.1| DNA methylase N-4/N-6 domain protein [candidate division TM7
           genomosp. GTL1]
          Length = 165

 Score = 36.6 bits (83), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           KP  +L   +   TK  D++++PF GSG++   + KL+R    +E    Y ++A KR   
Sbjct: 96  KPIEILVPYIKVLTKRDDLVVEPFCGSGSTLIASTKLKRRCYIMEKSPVYAEVALKRWEK 155

Query: 268 VQPLGNIELT 277
           +  L   +LT
Sbjct: 156 LTGLKREKLT 165


>gi|16082511|ref|NP_393798.1| adenine-specific DNA methylase [Thermoplasma acidophilum DSM 1728]
          Length = 346

 Score = 36.6 bits (83), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 28/39 (71%)

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           ++++  TK  + ++DPF GSGT+   AKKL R+ IGIE+
Sbjct: 136 QMMMRYTKRNEWVIDPFSGSGTTLIEAKKLGRNAIGIEI 174


>gi|315920289|ref|ZP_07916529.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694164|gb|EFS30999.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 467

 Score = 36.6 bits (83), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 49  YNLQLNGQLYRPDHS----LVDAVTDSWDKFSS---FEAYDAFTRAWLLACRR-VLKPNG 100
           Y+LQ NGQL RP+ S      DAV + W+ F      + YD+   A   +  + VL    
Sbjct: 229 YSLQSNGQLKRPEDSKRMEYFDAVIEEWEAFEKKGYHDFYDSGYEALFKSYSQGVLNNKE 288

Query: 101 TLWVIGSYHN 110
           +LW I  YH+
Sbjct: 289 SLWEIAFYHS 298


>gi|284929200|ref|YP_003421722.1| RNA methyltransferase, RsmD family [cyanobacterium UCYN-A]
 gi|284809644|gb|ADB95341.1| RNA methyltransferase, RsmD family [cyanobacterium UCYN-A]
          Length = 181

 Score = 36.2 bits (82), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV 65
           K+IKG+++ +L  L  +  D I+ DPPY       LY+P   L+
Sbjct: 91  KVIKGDALRILNSLEEQQFDFIYFDPPY----RSNLYQPTLELI 130


>gi|299148176|ref|ZP_07041238.1| putative outer membrane protein, probably involved in nutrient
           binding [Bacteroides sp. 3_1_23]
 gi|298512937|gb|EFI36824.1| putative outer membrane protein, probably involved in nutrient
           binding [Bacteroides sp. 3_1_23]
          Length = 564

 Score = 36.2 bits (82), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 49  YNLQLNGQLYRPDHS----LVDAVTDSWDKFSS---FEAYDAFTRAWLLACRR-VLKPNG 100
           Y+LQ NGQL RP+ S      DAV + W+ F      + YD    A   +  + VL    
Sbjct: 229 YSLQSNGQLKRPEDSKRMEYFDAVIEEWEAFEKKGYHDFYDGGYEALFKSYSQGVLNNKE 288

Query: 101 TLWVIGSYHN 110
           +LW I  YH+
Sbjct: 289 SLWEIAFYHS 298


>gi|134294161|ref|YP_001117896.1| adenine-specific DNA-methyltransferase [Burkholderia vietnamiensis
           G4]
 gi|134137318|gb|ABO53061.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia vietnamiensis G4]
          Length = 672

 Score = 36.2 bits (82), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 71/161 (44%), Gaps = 32/161 (19%)

Query: 19  WKDK---IIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQLYRPD------HSLVD 66
           W D    +I+G+++ V   L K  A  V L++ DPPYN   +  +Y  D      H L  
Sbjct: 98  WDDTRHLVIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTG-SDFVYADDFSDSIRHYL-- 154

Query: 67  AVTDSWD----KFSSFEAYDAFTRAW-------LLACRRVLKPNGTLWVIGSYHNIFRIG 115
           A+T   D    + ++ EA   F   W       L     +L   G + V    H +  + 
Sbjct: 155 AMTGQTDAGVKRNTNTEANGRFHTDWLNMMYPRLKLAHALLSDEGLIAVHIDEHEVHALV 214

Query: 116 TMLQNLNFWILNDI---VWRKSNPMPNFRGRRFQNAHETLI 153
            ML+ + F   N++   VW K NP  + RG  +Q  HE+L+
Sbjct: 215 LMLREI-FGEENELGVAVWDKRNPKGDARGIAYQ--HESLV 252


>gi|325525531|gb|EGD03327.1| type III DNA modification methyltransferase [Burkholderia sp.
           TJI49]
          Length = 668

 Score = 36.2 bits (82), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 65/160 (40%), Gaps = 30/160 (18%)

Query: 19  WKDK---IIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQLYRPDH---------S 63
           W D    +I+G+++ V   L K  A  V L++ DPPYN         PD          +
Sbjct: 94  WDDTRHLVIEGDNLDVMKLLHKSYAGKVKLVYIDPPYN--TGSDFVYPDDFSDSIRHYLA 151

Query: 64  LVDAVTDSWDKFSSFEAYDAFTRAW-------LLACRRVLKPNGTLWVIGSYHNIFRIGT 116
           +         + ++ EA   F   W       L     +L   G + V    H +  +  
Sbjct: 152 MTGQTEGGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSDEGLIVVHIDEHEVHALVL 211

Query: 117 MLQNLNFWILNDI---VWRKSNPMPNFRGRRFQNAHETLI 153
           ML+ + F   N++   VW K NP  + RG  +Q  HE+L+
Sbjct: 212 MLREI-FGEENELGVAVWDKRNPKGDARGIAYQ--HESLV 248


>gi|330942085|gb|EGH44750.1| site-specific DNA methyltransferase [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 262

 Score = 36.2 bits (82), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 22/38 (57%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
           HPT KP  L+  +L   T  G   LDPF GSG++G  A
Sbjct: 223 HPTVKPTDLMGYLLRLVTPLGGKTLDPFMGSGSTGKAA 260


>gi|238809749|dbj|BAH69539.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 402

 Score = 36.2 bits (82), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           + P + P   + +     TK  D ++D F G GT+   ++KL R F+G ++      ++ 
Sbjct: 46  MFPVELPLYFIKKY----TKENDTVMDNFSGRGTTAYASRKLNRKFVGNDLNPYAFVLSK 101

Query: 263 KRIASVQPLGNIE 275
            ++ ++  +  IE
Sbjct: 102 SKLINISNIEKIE 114


>gi|259502624|ref|ZP_05745526.1| type III restriction-modification system StyLTI enzyme mod
           [Lactobacillus antri DSM 16041]
 gi|259169439|gb|EEW53934.1| type III restriction-modification system StyLTI enzyme mod
           [Lactobacillus antri DSM 16041]
          Length = 649

 Score = 36.2 bits (82), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 17/102 (16%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLY-----RPDHSLVD--AVT 69
           K+    G+++ VL  L    A  +D+I+ DPPYN   +G +Y       D  L D   +T
Sbjct: 98  KNLFFTGDNLEVLRHLQTSYANKIDVIYIDPPYNTGSDGFVYPDSFEYSDDQLKDMFGIT 157

Query: 70  D-------SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
           D       S    +S  A+  F    L+  +R+L   GT+++
Sbjct: 158 DEQVERMKSIQGKASHSAWLTFMYPRLVLAKRILSDQGTIFI 199


>gi|217031872|ref|ZP_03437375.1| hypothetical protein HPB128_199g80 [Helicobacter pylori B128]
 gi|216946524|gb|EEC25126.1| hypothetical protein HPB128_199g80 [Helicobacter pylori B128]
          Length = 78

 Score = 36.2 bits (82), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 24/37 (64%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           +K+    KP  L+SR++  ST   DIILD F GSGT+
Sbjct: 20  QKIFNNPKPTKLISRLIELSTNESDIILDFFAGSGTT 56


>gi|118498062|ref|YP_899112.1| adenine specific DNA methylase [Francisella tularensis subsp.
           novicida U112]
 gi|194323287|ref|ZP_03057071.1| DNA methylase domain protein [Francisella tularensis subsp.
           novicida FTE]
 gi|118423968|gb|ABK90358.1| adenine specific DNA methylase [Francisella novicida U112]
 gi|194322651|gb|EDX20131.1| DNA methylase domain protein [Francisella tularensis subsp.
           novicida FTE]
          Length = 660

 Score = 36.2 bits (82), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 30/55 (54%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           + +  L+ + G+K+    KP  LL  +++      D+ILD F GSGT+G    +L
Sbjct: 401 TATNYLKKEFGKKIFDNPKPLPLLKDLIILGLNSNDVILDFFAGSGTTGDAVMQL 455


>gi|325578404|ref|ZP_08148539.1| type III restriction-modification system methyltransferase
           [Haemophilus parainfluenzae ATCC 33392]
 gi|325160140|gb|EGC72269.1| type III restriction-modification system methyltransferase
           [Haemophilus parainfluenzae ATCC 33392]
          Length = 613

 Score = 36.2 bits (82), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 7/62 (11%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPG--DIILDPFFGSGTSGAVAKKL-----RRSFIGI 251
           DG  +    KP  LL RIL  ST+    DIILD F GSGT+     +L      R FI +
Sbjct: 369 DGTAVFSNPKPIGLLQRILSLSTEKNSNDIILDFFSGSGTTAHAIMELNKDGGNRKFIVV 428

Query: 252 EM 253
           ++
Sbjct: 429 QL 430


>gi|13541273|ref|NP_110961.1| adenine-specific DNA methylase [Thermoplasma volcanium GSS1]
 gi|14324657|dbj|BAB59584.1| DNA adenine modification methylase [Thermoplasma volcanium GSS1]
          Length = 347

 Score = 36.2 bits (82), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 4/50 (8%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           Q P  L+ R     ++  + +LDPF GSGT+   AKKL R+ +GIE+ ++
Sbjct: 133 QIPRQLILRF----SRKDEWVLDPFSGSGTTLIEAKKLGRNSLGIEINEE 178


>gi|163797425|ref|ZP_02191377.1| ParB domain protein nuclease [alpha proteobacterium BAL199]
 gi|159177344|gb|EDP61901.1| ParB domain protein nuclease [alpha proteobacterium BAL199]
          Length = 437

 Score = 36.2 bits (82), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 29/67 (43%)

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           KD    HPT KP       +      G +  +PF GSG+     +   R    +E+   Y
Sbjct: 336 KDDRPDHPTPKPLDAFGIPMRQHVARGGLCYEPFSGSGSQIMAGEANGRRVYAMEISPAY 395

Query: 258 IDIATKR 264
           +D+A +R
Sbjct: 396 VDVAIER 402


>gi|324111107|gb|EGC05093.1| DNA methylase [Escherichia fergusonii B253]
          Length = 652

 Score = 36.2 bits (82), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 23/113 (20%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDH----- 62
           EN+NS    +  +IKG+++ VL+ +    A+ V +I+ DPPYN   +G +Y  D      
Sbjct: 96  ENKNS----QHLLIKGDNLEVLKHMVNAYAEKVKMIYIDPPYNTGKDGFVYNDDRKFTPE 151

Query: 63  ---SLVDAVTDSWDKF--------SSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
               L     D   +         SS  A+  F    L   R +++ +GT+++
Sbjct: 152 QLSELAGIDLDEAKRILEFTTKGSSSHSAWLTFIYPRLYIARELMREDGTIFI 204


>gi|239625145|ref|ZP_04668176.1| RNA methyltransferase [Clostridiales bacterium 1_7_47_FAA]
 gi|239519375|gb|EEQ59241.1| RNA methyltransferase [Clostridiales bacterium 1_7_47FAA]
          Length = 554

 Score = 36.2 bits (82), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           +C    R+ +K   +++P Q  E L  + L ++  K  ++++D + G GT G +A +   
Sbjct: 372 LCGCKFRISSKSFYQINPVQ-TEVLYGKALELAGLKGQEVVIDAYCGIGTIGIIASRQAG 430

Query: 247 SFIGIEMKQDYIDIAT 262
             IG+E+ QD +  A 
Sbjct: 431 QVIGVELNQDAVKDAV 446


>gi|320161782|ref|YP_004175007.1| putative DNA methyltransferase [Anaerolinea thermophila UNI-1]
 gi|319995636|dbj|BAJ64407.1| putative DNA methyltransferase [Anaerolinea thermophila UNI-1]
          Length = 997

 Score = 36.2 bits (82), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 7/87 (8%)

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKP-GDIILDPFFGSGTSGAVAKKL--- 244
             G+  L+++    +    KP +L+SRI+   T      +LD F GSGT+G     L   
Sbjct: 708 ADGTRLLQDQFNSIVFTNPKPVSLISRIVQLGTHDINQTVLDFFAGSGTTGHAVINLNRE 767

Query: 245 ---RRSFIGIEMKQDYIDIATKRIASV 268
              RR FI +EM   +  +   RI  V
Sbjct: 768 DGRRRKFILVEMAHYFDTVLLPRIKKV 794


>gi|319776841|ref|YP_004136492.1| type ii r/m system DNA methylase [Mycoplasma fermentans M64]
 gi|319776968|ref|YP_004136619.1| type ii r/m system DNA methylase [Mycoplasma fermentans M64]
 gi|319777200|ref|YP_004136851.1| type ii r/m system DNA methylase [Mycoplasma fermentans M64]
 gi|318037916|gb|ADV34115.1| Type II R/M system DNA methylase [Mycoplasma fermentans M64]
 gi|318038043|gb|ADV34242.1| Type II R/M system DNA methylase [Mycoplasma fermentans M64]
 gi|318038275|gb|ADV34474.1| Type II R/M system DNA methylase [Mycoplasma fermentans M64]
          Length = 396

 Score = 36.2 bits (82), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           + P + P   + +     TK  D ++D F G GT+   ++KL R F+G ++      ++ 
Sbjct: 40  MFPVELPLYFIKKY----TKENDTVMDNFSGRGTTAYASRKLNRKFVGNDLNPYAFVLSK 95

Query: 263 KRIASVQPLGNIE 275
            ++ ++  +  IE
Sbjct: 96  SKLINISNIEKIE 108


>gi|255608747|ref|XP_002538950.1| conserved hypothetical protein [Ricinus communis]
 gi|223509626|gb|EEF23433.1| conserved hypothetical protein [Ricinus communis]
          Length = 298

 Score = 36.2 bits (82), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 23/130 (17%)

Query: 19  WKDKIIKGNSISVLEKLPAK---SVDLIFADPPYN--------LQLNGQLYRPDHSLVDA 67
           W++KI  G+++ V+  L  +    VDLI+ DPP++        + L G+    + +  + 
Sbjct: 175 WRNKIFWGDNLQVMSHLLKELRGKVDLIYIDPPFDSKADYKKSVSLKGRAAESNRASFEE 234

Query: 68  --VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL---- 121
              TD W+     + Y  F    LL  R +L PNG++++   Y     +  ML  +    
Sbjct: 235 KQYTDIWNN----DEYLQFMFERLLLLRELLSPNGSIYLHCDYRKSHHLKLMLDEILGPE 290

Query: 122 NFWILNDIVW 131
           NF  +N+++W
Sbjct: 291 NF--VNEVIW 298


>gi|206600139|ref|YP_002241644.1| gp60 [Mycobacterium phage Pacc40]
 gi|206287227|gb|ACI12571.1| gp60 [Mycobacterium phage Pacc40]
          Length = 1341

 Score = 36.2 bits (82), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 30/56 (53%)

Query: 212  LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            ++ R++   + PG+++ DPF G GT    A KL R   G+E+   Y   A K + +
Sbjct: 1269 IVDRLITRFSNPGELVFDPFGGLGTVPLRALKLGRRGRGVELNPGYYFDAVKYLQA 1324


>gi|163756649|ref|ZP_02163760.1| hypothetical protein KAOT1_00260 [Kordia algicida OT-1]
 gi|161323324|gb|EDP94662.1| hypothetical protein KAOT1_00260 [Kordia algicida OT-1]
          Length = 662

 Score = 36.2 bits (82), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 23/113 (20%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
           EN+NS    ++ +IKG+++ VL+ L     + V +I+ DPPYN   +G +Y  D      
Sbjct: 89  ENKNS----ENLLIKGDNLEVLKHLSNAYYEKVKMIYIDPPYNTGSDGFVYADDRKFTSE 144

Query: 68  ---------------VTD-SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
                          + D +  K +S  A+  F    L   +++LK +G ++V
Sbjct: 145 ELQELAGVNEERAKRILDFTQSKSNSHSAWLTFMYPRLYIAKQLLKEDGVIFV 197


>gi|167038170|ref|YP_001665748.1| putative RNA methylase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|167039121|ref|YP_001662106.1| putative RNA methylase [Thermoanaerobacter sp. X514]
 gi|256750918|ref|ZP_05491802.1| putative RNA methylase [Thermoanaerobacter ethanolicus CCSD1]
 gi|300913289|ref|ZP_07130606.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter sp. X561]
 gi|307723697|ref|YP_003903448.1| DNA methylase N-4/N-6 domain-containing protein [Thermoanaerobacter
           sp. X513]
 gi|320116579|ref|YP_004186738.1| DNA methylase N-4/N-6 domain-containing protein [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|166853361|gb|ABY91770.1| putative RNA methylase [Thermoanaerobacter sp. X514]
 gi|166857004|gb|ABY95412.1| putative RNA methylase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256750253|gb|EEU63273.1| putative RNA methylase [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889974|gb|EFK85119.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter sp. X561]
 gi|307580758|gb|ADN54157.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter sp. X513]
 gi|319929670|gb|ADV80355.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 259

 Score = 36.2 bits (82), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           +++  ++ GD +LDP  GSGT+    K L R  IG ++  D +++ TKR
Sbjct: 41  VILRYSQEGDFVLDPMVGSGTTLIETKILNRRGIGFDINPDSVEL-TKR 88


>gi|119383720|ref|YP_914776.1| DNA methylase N-4/N-6 domain-containing protein [Paracoccus
           denitrificans PD1222]
 gi|119373487|gb|ABL69080.1| DNA methylase N-4/N-6 domain protein [Paracoccus denitrificans
           PD1222]
          Length = 883

 Score = 35.8 bits (81), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 31/60 (51%)

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           + G ++H       ++ R +   T+PG+ + DPF G  T    A KL R  IG+E+ + Y
Sbjct: 786 RKGNEMHLCPLQYDIVDRAIAQYTEPGEWVYDPFGGLMTVPFRAIKLGRKGIGVELNKGY 845


Searching..................................................done


Results from round 2




>gi|254780466|ref|YP_003064879.1| putative modification methylase [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040143|gb|ACT56939.1| putative modification methylase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 375

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 375/375 (100%), Positives = 375/375 (100%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP
Sbjct: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN
Sbjct: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM
Sbjct: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV
Sbjct: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ
Sbjct: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
           PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS
Sbjct: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360

Query: 361 INTLRILVRKELYNC 375
           INTLRILVRKELYNC
Sbjct: 361 INTLRILVRKELYNC 375


>gi|315122079|ref|YP_004062568.1| putative modification methylase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495481|gb|ADR52080.1| putative modification methylase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 380

 Score =  531 bits (1367), Expect = e-149,   Method: Composition-based stats.
 Identities = 324/375 (86%), Positives = 351/375 (93%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           M++K+ L I++N+NSI  WKDKIIKGNSISVLEKLPAKSVDL+FADPPYNLQLNG+L+RP
Sbjct: 1   MNKKSRLVIDQNKNSILSWKDKIIKGNSISVLEKLPAKSVDLVFADPPYNLQLNGKLHRP 60

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           D+SLV+AVTDSWDKFSSFEAYDAFTRAWLLAC+RVLKP+GTLWVIGSYHNIFRIG MLQN
Sbjct: 61  DNSLVNAVTDSWDKFSSFEAYDAFTRAWLLACQRVLKPSGTLWVIGSYHNIFRIGAMLQN 120

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK+KGYTFNYDALKAANEDVQM
Sbjct: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKSKGYTFNYDALKAANEDVQM 180

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           RSDWL PICSG+ERLRNKDGEKLH TQKPE+LLSRIL SSTKPGD +LDPFFGSGT+GAV
Sbjct: 181 RSDWLFPICSGAERLRNKDGEKLHATQKPESLLSRILTSSTKPGDFVLDPFFGSGTTGAV 240

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           AKKL RSF+GIEM+QDYIDIATKRI SV+PLGNIELTVLTGK+ EPRVAFNLLVERG+IQ
Sbjct: 241 AKKLGRSFLGIEMEQDYIDIATKRIESVKPLGNIELTVLTGKKAEPRVAFNLLVERGIIQ 300

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
            GQ+LTNAQ NISA V  DGTL+SG E GSIHRVGAKVSG ETCNGWNFWYFEK G+LHS
Sbjct: 301 AGQVLTNAQRNISAIVRVDGTLVSGVESGSIHRVGAKVSGLETCNGWNFWYFEKYGKLHS 360

Query: 361 INTLRILVRKELYNC 375
           I+TLR LVRKELY  
Sbjct: 361 IDTLRSLVRKELYAI 375


>gi|227821131|ref|YP_002825101.1| modification methylase SmeIP [Sinorhizobium fredii NGR234]
 gi|227340130|gb|ACP24348.1| modification methylase SmeIP [Sinorhizobium fredii NGR234]
          Length = 376

 Score =  507 bits (1307), Expect = e-142,   Method: Composition-based stats.
 Identities = 257/373 (68%), Positives = 307/373 (82%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           MS   SLA          W D IIKG+ ++ L  LP  SVD++FADPPYNLQL G L+RP
Sbjct: 1   MSSVVSLAEISRAARPLSWLDSIIKGDCVAALNALPDNSVDVVFADPPYNLQLGGMLHRP 60

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           D SLVDAV D WD+F+SFEAYDAFTRAWLLACRRVLKP GTLWVIGSYHNIFR+G +LQ+
Sbjct: 61  DQSLVDAVDDEWDQFASFEAYDAFTRAWLLACRRVLKPTGTLWVIGSYHNIFRVGAILQD 120

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           L+FWILNDI+WRK+NPMPNF+GRRFQNAHETLIWA+P+ KAKGYTFNY+A+KAAN+DVQM
Sbjct: 121 LHFWILNDIIWRKTNPMPNFKGRRFQNAHETLIWATPNAKAKGYTFNYEAMKAANDDVQM 180

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           RSDWL PICSG ERL+  DG+K+HPTQKPEALL+RIL++STKPGD++LDPFFGSGT+GAV
Sbjct: 181 RSDWLFPICSGGERLKGDDGKKVHPTQKPEALLARILMASTKPGDVVLDPFFGSGTTGAV 240

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           AK+L R F+GIE +QDYID A +RIA+V+PLG   L+V+TGK+ EPRVAFN L+E GLI+
Sbjct: 241 AKRLGRHFVGIEREQDYIDAAAERIAAVEPLGKATLSVMTGKKAEPRVAFNTLIESGLIK 300

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
           PG +LT+A+   SA V ADGTL SG E GSIHR+GAKV G + CNGW FW+FE  G L  
Sbjct: 301 PGTVLTDAKRRYSAIVRADGTLASGGEAGSIHRLGAKVQGLDACNGWTFWHFEAGGTLKP 360

Query: 361 INTLRILVRKELY 373
           I+ LR ++R +L 
Sbjct: 361 IDELRSVIRNDLA 373


>gi|150395765|ref|YP_001326232.1| DNA methylase N-4/N-6 domain-containing protein [Sinorhizobium
           medicae WSM419]
 gi|150027280|gb|ABR59397.1| DNA methylase N-4/N-6 domain protein [Sinorhizobium medicae WSM419]
          Length = 398

 Score =  505 bits (1300), Expect = e-141,   Method: Composition-based stats.
 Identities = 256/373 (68%), Positives = 307/373 (82%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           MS   SLA          W D IIKG+ ++ L  LP  SVD++FADPPYNLQL G L+RP
Sbjct: 23  MSSVVSLAEISRAARPLNWLDSIIKGDCVAALNALPDNSVDVVFADPPYNLQLGGTLHRP 82

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           D SLVDAV D WD+F+SFEAYDAFTRAWLLACRRVLKP GTLWVIGSYHNIFR+G +LQ+
Sbjct: 83  DQSLVDAVDDDWDQFASFEAYDAFTRAWLLACRRVLKPTGTLWVIGSYHNIFRVGAILQD 142

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           L+FW+LNDI+WRK+NPMPNF+GRRFQNAHETLIWA+P+ KAKGYTFNY+A+KAAN+DVQM
Sbjct: 143 LHFWVLNDIIWRKTNPMPNFKGRRFQNAHETLIWATPNAKAKGYTFNYEAMKAANDDVQM 202

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           RSDWL PICSGSERL+  DG+K+HPTQKPEALL+RIL++STKPGD++LDPFFGSGT+GAV
Sbjct: 203 RSDWLFPICSGSERLKGDDGKKVHPTQKPEALLARILMASTKPGDVVLDPFFGSGTTGAV 262

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           AK+L R F+GIE +QDYID A +RIA+V+PLG   L+V+TGK+ EPRVAFN L+E GLI+
Sbjct: 263 AKRLGRHFVGIEREQDYIDAAAERIAAVEPLGKATLSVMTGKKAEPRVAFNTLIESGLIK 322

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
           PG +LT+A+   SA V ADGTL SG E GSIHR+GAKV G + CNGW FW+FE    L  
Sbjct: 323 PGTVLTDAKRRYSAIVRADGTLASGGEAGSIHRLGAKVQGLDACNGWTFWHFEDGSVLKP 382

Query: 361 INTLRILVRKELY 373
           I+ LR ++R +L 
Sbjct: 383 IDELRSVIRNDLA 395


>gi|15964679|ref|NP_385032.1| adenine DNA methyltransferase protein [Sinorhizobium meliloti 1021]
 gi|307304257|ref|ZP_07584009.1| DNA methylase N-4/N-6 domain protein [Sinorhizobium meliloti
           BL225C]
 gi|307320562|ref|ZP_07599977.1| DNA methylase N-4/N-6 domain protein [Sinorhizobium meliloti AK83]
 gi|7387561|sp|O30569|MTS1_RHIME RecName: Full=Modification methylase SmeI; Short=M.SmeI; AltName:
           Full=Adenine-specific methyltransferase SmeIP; AltName:
           Full=M.CcrMI ortholog; AltName: Full=Modification
           methylase SmeIP; Short=M.SmeIP
 gi|15073857|emb|CAC45498.1| Adenine DNA methyltransferase [Sinorhizobium meliloti 1021]
 gi|306893838|gb|EFN24609.1| DNA methylase N-4/N-6 domain protein [Sinorhizobium meliloti AK83]
 gi|306902725|gb|EFN33318.1| DNA methylase N-4/N-6 domain protein [Sinorhizobium meliloti
           BL225C]
          Length = 376

 Score =  505 bits (1300), Expect = e-141,   Method: Composition-based stats.
 Identities = 257/373 (68%), Positives = 308/373 (82%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           MS   SLA          W D IIKG+ ++ L  LP  SVD++FADPPYNLQL G L+RP
Sbjct: 1   MSSVVSLAEISRAARPLNWLDSIIKGDCVAALNALPDHSVDVVFADPPYNLQLGGTLHRP 60

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           D SLVDAV D WD+F+SFEAYDAFTRAWLLACRRVLKP GTLWVIGSYHNIFR+G +LQ+
Sbjct: 61  DQSLVDAVDDDWDQFASFEAYDAFTRAWLLACRRVLKPTGTLWVIGSYHNIFRVGAILQD 120

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           L+FW+LNDI+WRK+NPMPNF+GRRFQNAHETLIWA+P+ KAKGYTFNY+A+KAAN+DVQM
Sbjct: 121 LHFWVLNDIIWRKTNPMPNFKGRRFQNAHETLIWATPNAKAKGYTFNYEAMKAANDDVQM 180

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           RSDWL PICSGSERL+  DG+K+HPTQKPEALL+RIL++STKPGD++LDPFFGSGT+GAV
Sbjct: 181 RSDWLFPICSGSERLKGDDGKKVHPTQKPEALLARILMASTKPGDVVLDPFFGSGTTGAV 240

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           AK+L R F+GIE +QDYID A +RIA+V+PLG   L+V+TGK+ EPRVAFN LVE GLI+
Sbjct: 241 AKRLGRHFVGIEREQDYIDAAAERIAAVEPLGKATLSVMTGKKAEPRVAFNTLVESGLIK 300

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
           PG +LT+A+   SA V ADGTL SG E GSIHR+GAKV G + CNGW FW+FE+   L  
Sbjct: 301 PGTVLTDAKRRYSAIVRADGTLASGGEAGSIHRLGAKVQGLDACNGWTFWHFEEGSVLKP 360

Query: 361 INTLRILVRKELY 373
           I+ LR ++R +L 
Sbjct: 361 IDELRSVIRNDLA 373


>gi|218510491|ref|ZP_03508369.1| site-specific DNA-methyltransferase (adenine-specific) protein
           [Rhizobium etli Brasil 5]
 gi|327191944|gb|EGE58926.1| site-specific DNA-methyltransferase (adenine-specific) protein
           [Rhizobium etli CNPAF512]
          Length = 380

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 254/359 (70%), Positives = 305/359 (84%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
             W D IIKG+ +S LE LP  SVD+IFADPPYNLQL G L+RPD SLVDAV D WD+F+
Sbjct: 21  ESWIDTIIKGDCVSALEALPTHSVDVIFADPPYNLQLGGTLHRPDQSLVDAVDDEWDQFA 80

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           SFEAYDAFTRAWLLACRRVLKP G++WVIGSYHNIFR+G  LQ+LNFWILNDI+WRK+NP
Sbjct: 81  SFEAYDAFTRAWLLACRRVLKPTGSIWVIGSYHNIFRVGATLQDLNFWILNDIIWRKTNP 140

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           MPNF+GRRFQNAHET+IWASP+ KAKGYTFNYDA+KAAN+DVQMRSDWL PIC+G+ERL+
Sbjct: 141 MPNFKGRRFQNAHETMIWASPNAKAKGYTFNYDAMKAANDDVQMRSDWLFPICNGNERLK 200

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
            +DG+K+HPTQKPEALL+R++++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +QD
Sbjct: 201 GEDGKKVHPTQKPEALLARVIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQD 260

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATV 316
           YID A+ RIA+V+PLG  ELTV+TGK+ E RVAFN+LVE GLI+PGQ+LT+A+   SA V
Sbjct: 261 YIDAASARIAAVEPLGKAELTVMTGKKAEVRVAFNVLVESGLIKPGQVLTDAKRRYSAIV 320

Query: 317 CADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYNC 375
            ADGT+ SG E GSIHR+GAKV G + CNGW FW+FE    L  I+ LR ++R +L   
Sbjct: 321 RADGTVASGGEAGSIHRLGAKVQGLDACNGWTFWHFEDGQSLRPIDDLRSVIRSDLAKV 379


>gi|190890705|ref|YP_001977247.1| site-specific DNA-methyltransferase (adenine-specific) protein
           [Rhizobium etli CIAT 652]
 gi|190695984|gb|ACE90069.1| site-specific DNA-methyltransferase (adenine-specific) protein
           [Rhizobium etli CIAT 652]
          Length = 380

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 254/359 (70%), Positives = 305/359 (84%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
             W D IIKG+ +S LE LP  SVD+IFADPPYNLQL G L+RPD SLVDAV D WD+F+
Sbjct: 21  ESWIDTIIKGDCVSALEALPTHSVDVIFADPPYNLQLGGTLHRPDQSLVDAVDDEWDQFA 80

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           SFEAYDAFTRAWLLACRRVLKP G++WVIGSYHNIFR+G  LQ+LNFWILNDI+WRK+NP
Sbjct: 81  SFEAYDAFTRAWLLACRRVLKPTGSIWVIGSYHNIFRVGATLQDLNFWILNDIIWRKTNP 140

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           MPNF+GRRFQNAHET+IWASP+ KAKGYTFNYDA+KAAN+DVQMRSDWL PIC+G+ERL+
Sbjct: 141 MPNFKGRRFQNAHETMIWASPNAKAKGYTFNYDAMKAANDDVQMRSDWLFPICNGNERLK 200

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
            +DG+K+HPTQKPEALL+R++++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +QD
Sbjct: 201 GEDGKKVHPTQKPEALLARVIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQD 260

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATV 316
           YID A+ RIA+V+PLG  ELTV+TGK+ E RVAFN+LVE GLI+PGQ+LT+A+   SA V
Sbjct: 261 YIDAASARIAAVEPLGKAELTVMTGKKAEVRVAFNVLVESGLIKPGQVLTDAKRRYSAIV 320

Query: 317 CADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYNC 375
            ADGT+ SG E GSIHR+GAKV G + CNGW FW+FE    L  I+ LR ++R +L   
Sbjct: 321 RADGTVASGGEAGSIHRLGAKVQGLDACNGWTFWHFEDGQSLRPIDDLRSVIRSDLAKV 379


>gi|325292178|ref|YP_004278042.1| adenine DNA methyltransferase [Agrobacterium sp. H13-3]
 gi|325060031|gb|ADY63722.1| adenine DNA methyltransferase [Agrobacterium sp. H13-3]
          Length = 380

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 259/355 (72%), Positives = 307/355 (86%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           WKD IIKG+ ++ L+ LP++SVD IFADPPYNLQL G L+RPD SLVDAV D WD+FSSF
Sbjct: 24  WKDSIIKGDCVAALDALPSQSVDAIFADPPYNLQLGGTLHRPDQSLVDAVDDEWDQFSSF 83

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           EAYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+G+MLQNL+FWILNDIVWRK+NPMP
Sbjct: 84  EAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGSMLQNLDFWILNDIVWRKTNPMP 143

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NF+GRRFQNAHET+IWAS  PKAKGYTFNY+ALKA+N+DVQMRSDWL PICSG ERL+  
Sbjct: 144 NFKGRRFQNAHETMIWASRDPKAKGYTFNYEALKASNDDVQMRSDWLFPICSGHERLKGD 203

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           DG+K+HPTQKPEALL+RI+++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +QDYI
Sbjct: 204 DGKKVHPTQKPEALLARIIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQDYI 263

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D A+ RIA+V+PLG  ELTV+TGKR EPRVAFN LVE GL++PGQ+LT+A+   SA + A
Sbjct: 264 DAASARIAAVEPLGKAELTVMTGKRAEPRVAFNTLVESGLVRPGQVLTDAKRRYSAIIRA 323

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           DGT+ SG   GSIHR+GAKV G + CNGW FW+FE   +L  I+ LR ++R EL 
Sbjct: 324 DGTIASGGTAGSIHRLGAKVQGLDACNGWTFWHFEDGDQLKPIDDLRTIIRSELA 378


>gi|86356641|ref|YP_468533.1| site-specific DNA-methyltransferase (adenine-specific) protein
           [Rhizobium etli CFN 42]
 gi|86280743|gb|ABC89806.1| site-specific DNA-methyltransferase (adenine-specific) protein
           [Rhizobium etli CFN 42]
          Length = 380

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 254/360 (70%), Positives = 305/360 (84%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
              W D IIKG+ +S LE LP  SVD+IFADPPYNLQL G L+RPD SLVDAV D WD+F
Sbjct: 20  TDSWVDTIIKGDCVSALEALPTHSVDVIFADPPYNLQLGGTLHRPDQSLVDAVDDEWDQF 79

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
           +SFEAYDAFTRAWLLACRRVLKP G++WVIGSYHNIFR+G  LQ+LNFWILNDI+WRK+N
Sbjct: 80  ASFEAYDAFTRAWLLACRRVLKPTGSIWVIGSYHNIFRVGATLQDLNFWILNDIIWRKTN 139

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           PMPNF+GRRFQNAHET+IWASP+ KAKGYTFNYDA+KAAN+DVQMRSDWL PIC+G+ERL
Sbjct: 140 PMPNFKGRRFQNAHETMIWASPNAKAKGYTFNYDAMKAANDDVQMRSDWLFPICNGNERL 199

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           + +DG+K+HPTQKPEALL+R++++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +Q
Sbjct: 200 KGEDGKKVHPTQKPEALLARVIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQ 259

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
           DYID A+ RIA+V+PLG  ELTV+TGK+ E RVAFN+LVE GLI+PGQ+LT+A+   SA 
Sbjct: 260 DYIDAASARIAAVEPLGKAELTVMTGKKAEVRVAFNVLVESGLIKPGQVLTDAKRRYSAI 319

Query: 316 VCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYNC 375
           V ADGT+ SG E GSIHR+GAKV G + CNGW FW+FE    L  I+ LR ++R +L   
Sbjct: 320 VRADGTVASGGEAGSIHRLGAKVQGLDACNGWTFWHFEDGQSLRPIDDLRSVIRSDLAKV 379


>gi|222147821|ref|YP_002548778.1| cell cycle regulated site-specific DNA-methyltransferase protein
           [Agrobacterium vitis S4]
 gi|221734809|gb|ACM35772.1| cell cycle regulated site-specific DNA-methyltransferase protein
           [Agrobacterium vitis S4]
          Length = 377

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 254/372 (68%), Positives = 311/372 (83%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           M+    LA     N  F W + IIKG+ ++ LE LP +SVD IFADPPYNLQL G L+RP
Sbjct: 1   MASVFPLADLRRSNDPFAWMNSIIKGDCVAALEALPDQSVDAIFADPPYNLQLGGMLHRP 60

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           D S+VDAV D+WD+F+SFEAYDAFTRAWLLACRRVLKP+GT+WVIGSYHNIFR+G  LQ+
Sbjct: 61  DQSVVDAVDDAWDQFASFEAYDAFTRAWLLACRRVLKPHGTIWVIGSYHNIFRVGATLQD 120

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           LNFWILNDIVWRK+NPMPNF+GRRFQNAHET+IWAS   KAK YTFNYDALKA+N+DVQM
Sbjct: 121 LNFWILNDIVWRKTNPMPNFKGRRFQNAHETMIWASRDAKAKSYTFNYDALKASNDDVQM 180

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           RSDWL PICSG ERL+ +DG+K+HPTQKPEALL+R++++STKPGD++LDPFFGSGT+GAV
Sbjct: 181 RSDWLFPICSGGERLKGEDGKKIHPTQKPEALLARVILASTKPGDVVLDPFFGSGTTGAV 240

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           AK+L R+F+GIE +QDYID A+ RI +V+ LG +ELTVLTGK++EPRVAFN L++ GL+Q
Sbjct: 241 AKRLGRNFVGIEREQDYIDAASARIDAVEALGKVELTVLTGKKSEPRVAFNTLLDSGLLQ 300

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
           PGQ+L+  +   SA + ADGTL+SGT+ GSIHRVGAKV G + CNGW FW++E  G+L  
Sbjct: 301 PGQVLSCEKRRHSAIIRADGTLVSGTQAGSIHRVGAKVRGLDACNGWTFWHYEDAGKLKP 360

Query: 361 INTLRILVRKEL 372
           I+ LR LVR  +
Sbjct: 361 IDDLRSLVRASM 372


>gi|241203450|ref|YP_002974546.1| DNA methylase N-4/N-6 domain protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857340|gb|ACS55007.1| DNA methylase N-4/N-6 domain protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 379

 Score =  501 bits (1290), Expect = e-140,   Method: Composition-based stats.
 Identities = 257/356 (72%), Positives = 305/356 (85%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            W D IIKG+ +S LE LP+ SVD+IFADPPYNLQL G L+RPD SLVDAV D WD+F+S
Sbjct: 22  SWVDTIIKGDCVSALEALPSHSVDIIFADPPYNLQLGGTLHRPDQSLVDAVDDEWDQFAS 81

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           FEAYDAFTRAWLLACRRVLKP G++WVIGSYHNIFR+G  LQ+LNFWILNDI+WRK+NPM
Sbjct: 82  FEAYDAFTRAWLLACRRVLKPTGSIWVIGSYHNIFRVGATLQDLNFWILNDIIWRKTNPM 141

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PNF+GRRFQNAHET+IWASPS KAKGYTFNYDALKAAN+DVQMRSDWL PIC+GSERL+ 
Sbjct: 142 PNFKGRRFQNAHETMIWASPSAKAKGYTFNYDALKAANDDVQMRSDWLFPICNGSERLKG 201

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           +DG+K HPTQKPEALL+R++++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +QDY
Sbjct: 202 EDGKKAHPTQKPEALLARVIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQDY 261

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
           ID A+ RIA+V+PLG  ELTV+TGK+ E RVAFN+LVE GLI+PGQ+LT+A+   SA V 
Sbjct: 262 IDAASARIAAVEPLGKAELTVMTGKKAEVRVAFNVLVESGLIKPGQVLTDARRRYSAIVR 321

Query: 318 ADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           ADGT+ SG E GSIHR+GAKV G + CNGW FW+FE    L  I+ LR ++R +L 
Sbjct: 322 ADGTVASGGEAGSIHRLGAKVQGLDACNGWTFWHFEDGQSLRPIDDLRSVIRSDLA 377


>gi|116250848|ref|YP_766686.1| modification methylase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255496|emb|CAK06572.1| putative modification methylase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 380

 Score =  501 bits (1289), Expect = e-140,   Method: Composition-based stats.
 Identities = 257/356 (72%), Positives = 305/356 (85%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            W D IIKG+ +S LE LP+ SVD+IFADPPYNLQL G L+RPD SLVDAV D WD+F+S
Sbjct: 22  SWVDTIIKGDCVSALEALPSHSVDIIFADPPYNLQLGGTLHRPDQSLVDAVDDDWDQFAS 81

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           FEAYDAFTRAWLLACRRVLKP G++WVIGSYHNIFR+G  LQ+LNFWILNDI+WRK+NPM
Sbjct: 82  FEAYDAFTRAWLLACRRVLKPTGSIWVIGSYHNIFRVGATLQDLNFWILNDIIWRKTNPM 141

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PNF+GRRFQNAHET+IWASPS KAKGYTFNYDALKAAN+DVQMRSDWL PIC+GSERL+ 
Sbjct: 142 PNFKGRRFQNAHETMIWASPSAKAKGYTFNYDALKAANDDVQMRSDWLFPICNGSERLKG 201

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           +DG+K HPTQKPEALL+R++++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +QDY
Sbjct: 202 EDGKKAHPTQKPEALLARVIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQDY 261

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
           ID A+ RIA+V+PLG  ELTV+TGK+ E RVAFN+LVE GLI+PGQ+LT+A+   SA V 
Sbjct: 262 IDAASARIAAVEPLGKAELTVMTGKKAEVRVAFNVLVESGLIKPGQVLTDARRRYSAIVR 321

Query: 318 ADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           ADGT+ SG E GSIHR+GAKV G + CNGW FW+FE    L  I+ LR ++R +L 
Sbjct: 322 ADGTVASGGEAGSIHRLGAKVQGLDACNGWTFWHFEDGQSLRPIDDLRSVIRSDLA 377


>gi|209548255|ref|YP_002280172.1| DNA methylase N-4/N-6 [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209534011|gb|ACI53946.1| DNA methylase N-4/N-6 domain protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 380

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 253/358 (70%), Positives = 305/358 (85%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            W D IIKG+ +S LE LP  SVD+IFADPPYNLQL G L+RPD SLVDAV D WD+F+S
Sbjct: 22  SWVDTIIKGDCVSALEALPTHSVDVIFADPPYNLQLGGTLHRPDQSLVDAVDDEWDQFAS 81

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           FEAYDAFTRAWLLACRRVLKP G++WVIGSYHNIFR+G  LQ+LNFWILNDI+WRK+NPM
Sbjct: 82  FEAYDAFTRAWLLACRRVLKPTGSIWVIGSYHNIFRVGATLQDLNFWILNDIIWRKTNPM 141

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PNF+GRRFQNAHET+IWASP+ KAKGYTFNYDA+KAAN+DVQMRSDWL PIC+G+ERL+ 
Sbjct: 142 PNFKGRRFQNAHETMIWASPNAKAKGYTFNYDAMKAANDDVQMRSDWLFPICNGNERLKG 201

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           +DG+K+HPTQKPEALL+R++++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +QDY
Sbjct: 202 EDGKKVHPTQKPEALLARVIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQDY 261

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
           ID A+ RIA+V+PLG  ELTV+TGK+ E RVAFN+LVE GLI+PGQ+LT+A+   SA V 
Sbjct: 262 IDAASARIAAVEPLGKAELTVMTGKKAEVRVAFNVLVESGLIKPGQVLTDAKRRYSAIVR 321

Query: 318 ADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYNC 375
           ADGT+ SG + GSIHR+GAKV G + CNGW FW+FE    L  I+ LR ++R +L   
Sbjct: 322 ADGTVASGGDAGSIHRLGAKVQGLDACNGWTFWHFEDGQSLRPIDDLRSVIRSDLAKV 379


>gi|159184467|ref|NP_353817.2| cell cycle regulated site-specific DNA-methyltransferase protein
           [Agrobacterium tumefaciens str. C58]
 gi|159139778|gb|AAK86602.2| cell cycle regulated site-specific DNA-methyltransferase protein
           [Agrobacterium tumefaciens str. C58]
          Length = 381

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 255/355 (71%), Positives = 303/355 (85%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           WKD IIKG+ ++ L+ LP++SVD IFADPPYNLQL G L+RPD SLVDAV D WD+F+SF
Sbjct: 24  WKDSIIKGDCVAALDALPSQSVDAIFADPPYNLQLGGTLHRPDQSLVDAVDDEWDQFASF 83

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+G MLQNL+FWILNDIVWRK+NPMP
Sbjct: 84  DAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGAMLQNLDFWILNDIVWRKTNPMP 143

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NF+GRRFQNAHET+IWAS  PKAK YTFNYDALKA+N+DVQMRSDWL PICSG ERL+  
Sbjct: 144 NFKGRRFQNAHETMIWASRDPKAKSYTFNYDALKASNDDVQMRSDWLFPICSGHERLKGD 203

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           DG+K+HPTQKPEALL+RI+++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +QDYI
Sbjct: 204 DGKKVHPTQKPEALLARIIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQDYI 263

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D A+ RI +V+PLG  ELTV+TGK+ EPRVAFN LVE GL++PGQ+LT+A+   SA + A
Sbjct: 264 DAASARITAVEPLGKAELTVMTGKKAEPRVAFNTLVESGLVRPGQVLTDARRRYSAIIRA 323

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           DGTL SG   GSIHR+GAKV G + CNGW FW+FE    L  I+ LR ++R E+ 
Sbjct: 324 DGTLASGGTAGSIHRLGAKVQGLDACNGWTFWHFEDGDALKPIDDLRTIIRSEMA 378


>gi|14091014|gb|AAK53552.1|AF327563_1 cell cycle-regulated methyltransferase CcrM [Agrobacterium
           tumefaciens]
          Length = 381

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 254/355 (71%), Positives = 302/355 (85%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           WKD IIKG+ ++ L+ LP++SVD IFADPPYNLQL G L+RPD SLVDAV D WD+F+SF
Sbjct: 24  WKDSIIKGDCVAALDALPSQSVDAIFADPPYNLQLGGTLHRPDQSLVDAVDDEWDQFASF 83

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+G MLQNL+FWILNDIVWRK+NPMP
Sbjct: 84  DAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGAMLQNLDFWILNDIVWRKTNPMP 143

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NF+GRRFQNAHET+IWAS  PKAK YTFNYDALKA+N+DVQMRSDWL PICSG ERL+  
Sbjct: 144 NFKGRRFQNAHETMIWASRDPKAKSYTFNYDALKASNDDVQMRSDWLFPICSGHERLKGD 203

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           DG+K+HPTQKPEALL+RI+++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +QDYI
Sbjct: 204 DGKKVHPTQKPEALLARIIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQDYI 263

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D A+ RI +V+PLG  ELTV+TGK+ EPRVAFN LVE G ++PGQ+LT+A+   SA + A
Sbjct: 264 DAASARITAVEPLGKAELTVMTGKKAEPRVAFNTLVESGFVRPGQVLTDARRRYSAIIRA 323

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           DGTL SG   GSIHR+GAKV G + CNGW FW+FE    L  I+ LR ++R E+ 
Sbjct: 324 DGTLASGGTAGSIHRLGAKVQGLDACNGWTFWHFEDGDALKPIDDLRTIIRSEMA 378


>gi|222085157|ref|YP_002543687.1| cell cycle regulated site-specific DNA-methyltransferase protein
           [Agrobacterium radiobacter K84]
 gi|221722605|gb|ACM25761.1| cell cycle regulated site-specific DNA-methyltransferase protein
           [Agrobacterium radiobacter K84]
          Length = 376

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 254/372 (68%), Positives = 307/372 (82%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           M+    LA      +   W D IIKG+ ++ LE LP  SVD+IFADPPYNLQL G L+RP
Sbjct: 1   MASVFPLADLRTSATPGSWVDTIIKGDCVAALEALPTHSVDVIFADPPYNLQLGGTLHRP 60

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           D SLVDAV D WD+F+SFEAYDAFTRAWLLACRRVLKP GT+WVIGSYHNIFR+G  +Q+
Sbjct: 61  DQSLVDAVDDEWDQFASFEAYDAFTRAWLLACRRVLKPTGTIWVIGSYHNIFRVGATMQD 120

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           LNFWILNDIVWRK+NPMPNF+GRRFQNAHET+IWASP+ K KGYTFNYDA+KAAN+DVQM
Sbjct: 121 LNFWILNDIVWRKTNPMPNFKGRRFQNAHETMIWASPNAKTKGYTFNYDAMKAANDDVQM 180

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           RSDWL PIC+G ERL+  DG+K+HPTQKPEALL+R++++S+KPGDIILDPFFGSGT+GAV
Sbjct: 181 RSDWLFPICNGGERLKGDDGKKVHPTQKPEALLARVIMASSKPGDIILDPFFGSGTTGAV 240

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           AK+L R F+GIE +QDYID A+ RIASV+PLG  ELTV+TGK+ E RVAFN+LVE GLI+
Sbjct: 241 AKRLGRHFVGIEREQDYIDAASARIASVEPLGKAELTVMTGKKAEARVAFNVLVESGLIK 300

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
           PGQ+LT+A+   SA V ADGT+ +G E GSIHR+GAKV G + CNGW FW+F+    L  
Sbjct: 301 PGQVLTDARRRHSAIVRADGTVAAGGEAGSIHRLGAKVQGLDACNGWTFWHFDDGQSLRP 360

Query: 361 INTLRILVRKEL 372
           I+ LR ++R ++
Sbjct: 361 IDELRAIIRNDM 372


>gi|218682477|ref|ZP_03530078.1| site-specific DNA-methyltransferase (adenine-specific) protein
           [Rhizobium etli CIAT 894]
          Length = 380

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 251/359 (69%), Positives = 302/359 (84%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
             W D IIKG+ +S LE LP  SVD+IFADPPYNLQL G L+RPD SLVDAV D WD+F+
Sbjct: 21  DSWVDTIIKGDCVSALEALPNHSVDVIFADPPYNLQLGGSLHRPDQSLVDAVDDEWDQFA 80

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           S EAYDAFTRAWLLACRRVLKP G++WVIGSYHNIFR+G  LQ+LNFWILNDI+WRK+NP
Sbjct: 81  SLEAYDAFTRAWLLACRRVLKPTGSIWVIGSYHNIFRVGATLQDLNFWILNDIIWRKTNP 140

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           MPNF+GRRFQNAHET+IWASP+ KAKGYTFNYDA+KAAN+DVQMRSDWL PIC+G+ERL+
Sbjct: 141 MPNFKGRRFQNAHETMIWASPNAKAKGYTFNYDAMKAANDDVQMRSDWLFPICNGNERLK 200

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
            +DG+K+HPTQKPEALL+R++++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +QD
Sbjct: 201 GEDGKKVHPTQKPEALLARVIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQD 260

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATV 316
           YID A+ RIA+V+PLG  ELTV+TGK+ E RVAFN+LVE GLI+ GQ+LT+ +   SA V
Sbjct: 261 YIDAASARIAAVEPLGKAELTVMTGKKAEVRVAFNVLVESGLIKAGQVLTDVRRRYSAIV 320

Query: 317 CADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYNC 375
            ADGT+ SG E GSIHR+GAKV G + CNGW FW+FE    L  I+ LR ++R +L   
Sbjct: 321 RADGTVASGGEAGSIHRLGAKVQGLDACNGWTFWHFEDGQSLRPIDDLRSVIRSDLAKV 379


>gi|2305232|gb|AAB71350.1| adenine DNA methyltransferase [Sinorhizobium meliloti]
          Length = 376

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 251/373 (67%), Positives = 302/373 (80%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           MS   SLA          W D IIKG+ ++ L  LP  SVD++FADPPYNLQL G L+RP
Sbjct: 1   MSSVVSLAEISRAARPLNWLDSIIKGDCVAALNALPDHSVDVVFADPPYNLQLGGTLHRP 60

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           D SLVDAV D WD+F+SFEAYDAFTRAWLLACRRVLKP GTLWVIGSYHNIFR+G +LQ+
Sbjct: 61  DQSLVDAVDDDWDQFASFEAYDAFTRAWLLACRRVLKPTGTLWVIGSYHNIFRVGAILQD 120

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           L+FW+LNDI+WRK+ P    +GRRFQNAHETLIWA+ + KAKGYTFNY+A+KAAN+DVQM
Sbjct: 121 LHFWVLNDIIWRKTQPDAELQGRRFQNAHETLIWATANAKAKGYTFNYEAMKAANDDVQM 180

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           RSDWL PICSGSERL+  DG+K+HPTQKPEALL+RIL++STKPGD++LDPFFGSGT+GAV
Sbjct: 181 RSDWLFPICSGSERLKGDDGKKVHPTQKPEALLARILMASTKPGDVVLDPFFGSGTTGAV 240

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           AK+L R F+GIE +QDYID A +RIA+V+PLG   L+V+TGK+ EPRVAFN LVE GLI+
Sbjct: 241 AKRLGRHFVGIEREQDYIDAAAERIAAVEPLGKATLSVMTGKKAEPRVAFNTLVESGLIK 300

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
           PG +LT+A+   SA V ADGTL SG E GSIHR+GAKV G + CNGW FW+FE+   L  
Sbjct: 301 PGTVLTDAKRRYSAIVRADGTLASGGEAGSIHRLGAKVQGLDACNGWTFWHFEEGSVLKP 360

Query: 361 INTLRILVRKELY 373
           I+ LR ++R +L 
Sbjct: 361 IDELRSVIRNDLA 373


>gi|237814961|ref|ZP_04593959.1| Modification methylase HinfI [Brucella abortus str. 2308 A]
 gi|237789798|gb|EEP64008.1| Modification methylase HinfI [Brucella abortus str. 2308 A]
          Length = 403

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 243/355 (68%), Positives = 299/355 (84%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE+LP  SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 45  WLDSIIKGDCVSALERLPDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 104

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 105 QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 164

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHETLIWAS   K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 165 NFRGRRFQNAHETLIWASREQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 224

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 225 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 284

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RI +V+PLG  ELTV+TGKR EPRVAF  ++E GL++PG +L + +   +A V A
Sbjct: 285 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRA 344

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           DGTL +  E GSIHR+GA+V G + CNGW FW+FE+ G L  I+ LR ++R+++ 
Sbjct: 345 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQMA 399


>gi|225626998|ref|ZP_03785037.1| Modification methylase HinfI [Brucella ceti str. Cudo]
 gi|225618655|gb|EEH15698.1| Modification methylase HinfI [Brucella ceti str. Cudo]
          Length = 403

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 243/355 (68%), Positives = 299/355 (84%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE+LP  SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 45  WLDSIIKGDCVSALERLPDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 104

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 105 QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 164

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHETLIWAS   K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 165 NFRGRRFQNAHETLIWASRDQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 224

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 225 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 284

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RI +V+PLG  ELTV+TGKR EPRVAF  ++E GL++PG +L + +   +A V A
Sbjct: 285 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRA 344

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           DGTL +  E GSIHR+GA+V G + CNGW FW+FE+ G L  I+ LR ++R+++ 
Sbjct: 345 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQMA 399


>gi|62289472|ref|YP_221265.1| modification methylase BabI [Brucella abortus bv. 1 str. 9-941]
 gi|82699397|ref|YP_413971.1| cytosine-N4-specific DNA-methyltransferase [Brucella melitensis
           biovar Abortus 2308]
 gi|254688783|ref|ZP_05152037.1| cytosine-N4-specific DNA-methyltransferase [Brucella abortus bv. 6
           str. 870]
 gi|254693266|ref|ZP_05155094.1| cytosine-N4-specific DNA-methyltransferase [Brucella abortus bv. 3
           str. Tulya]
 gi|254696912|ref|ZP_05158740.1| cytosine-N4-specific DNA-methyltransferase [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254729815|ref|ZP_05188393.1| cytosine-N4-specific DNA-methyltransferase [Brucella abortus bv. 4
           str. 292]
 gi|256257029|ref|ZP_05462565.1| cytosine-N4-specific DNA-methyltransferase [Brucella abortus bv. 9
           str. C68]
 gi|260545776|ref|ZP_05821517.1| modification methylase BabI [Brucella abortus NCTC 8038]
 gi|88913544|sp|Q2YMK2|MTB1_BRUA2 RecName: Full=Modification methylase BabI; Short=M.BabI; AltName:
           Full=Adenine-specific methyltransferase BabI; AltName:
           Full=DNA methyltransferase CcrM; AltName: Full=M.CcrMI
           ortholog
 gi|90109766|sp|P0C116|MTB1_BRUAB RecName: Full=Modification methylase BabI; Short=M.BabI; AltName:
           Full=Adenine-specific methyltransferase BabI; AltName:
           Full=DNA methyltransferase CcrM; AltName: Full=M.CcrMI
           ortholog
 gi|2305234|gb|AAB71351.1| adenine DNA methyltransferase [Brucella abortus]
 gi|62195604|gb|AAX73904.1| BabI, modification methylase BabI [Brucella abortus bv. 1 str.
           9-941]
 gi|82615498|emb|CAJ10472.1| SAM (and some other nucleotide) binding motif:Site-specific
           DNA-methyltransferase (cytosine-N4-specific):N-6
           Adenine-specific [Brucella melitensis biovar Abortus
           2308]
 gi|260097183|gb|EEW81058.1| modification methylase BabI [Brucella abortus NCTC 8038]
          Length = 377

 Score =  491 bits (1264), Expect = e-137,   Method: Composition-based stats.
 Identities = 243/355 (68%), Positives = 299/355 (84%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE+LP  SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 19  WLDSIIKGDCVSALERLPDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 78

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 79  QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 138

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHETLIWAS   K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 139 NFRGRRFQNAHETLIWASREQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 198

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 199 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 258

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RI +V+PLG  ELTV+TGKR EPRVAF  ++E GL++PG +L + +   +A V A
Sbjct: 259 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRA 318

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           DGTL +  E GSIHR+GA+V G + CNGW FW+FE+ G L  I+ LR ++R+++ 
Sbjct: 319 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQMA 373


>gi|189023721|ref|YP_001934489.1| Adenine-specific methyltransferase [Brucella abortus S19]
 gi|260754270|ref|ZP_05866618.1| DNA methylase N-4/N-6 domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260757489|ref|ZP_05869837.1| DNA methylase N-4/N-6 domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260761313|ref|ZP_05873656.1| DNA methylase N-4/N-6 domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260883294|ref|ZP_05894908.1| modification methylase BabI [Brucella abortus bv. 9 str. C68]
 gi|261213516|ref|ZP_05927797.1| DNA methylase N-4/N-6 domain-containing protein [Brucella abortus
           bv. 3 str. Tulya]
 gi|297247885|ref|ZP_06931603.1| adenine-specific DNA-methyltransferase [Brucella abortus bv. 5 str.
           B3196]
 gi|223635297|sp|B2S9Y5|MTB1_BRUA1 RecName: Full=Modification methylase BabI; Short=M.BabI; AltName:
           Full=Adenine-specific methyltransferase BabI; AltName:
           Full=DNA methyltransferase CcrM; AltName: Full=M.CcrMI
           ortholog
 gi|189019293|gb|ACD72015.1| Adenine-specific methyltransferase [Brucella abortus S19]
 gi|260667807|gb|EEX54747.1| DNA methylase N-4/N-6 domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260671745|gb|EEX58566.1| DNA methylase N-4/N-6 domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260674378|gb|EEX61199.1| DNA methylase N-4/N-6 domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260872822|gb|EEX79891.1| modification methylase BabI [Brucella abortus bv. 9 str. C68]
 gi|260915123|gb|EEX81984.1| DNA methylase N-4/N-6 domain-containing protein [Brucella abortus
           bv. 3 str. Tulya]
 gi|297175054|gb|EFH34401.1| adenine-specific DNA-methyltransferase [Brucella abortus bv. 5 str.
           B3196]
          Length = 386

 Score =  491 bits (1264), Expect = e-137,   Method: Composition-based stats.
 Identities = 243/355 (68%), Positives = 299/355 (84%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE+LP  SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 28  WLDSIIKGDCVSALERLPDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 87

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 88  QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 147

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHETLIWAS   K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 148 NFRGRRFQNAHETLIWASREQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 207

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 208 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 267

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RI +V+PLG  ELTV+TGKR EPRVAF  ++E GL++PG +L + +   +A V A
Sbjct: 268 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRA 327

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           DGTL +  E GSIHR+GA+V G + CNGW FW+FE+ G L  I+ LR ++R+++ 
Sbjct: 328 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQMA 382


>gi|239831358|ref|ZP_04679687.1| Modification methylase HinfI [Ochrobactrum intermedium LMG 3301]
 gi|239823625|gb|EEQ95193.1| Modification methylase HinfI [Ochrobactrum intermedium LMG 3301]
          Length = 443

 Score =  491 bits (1264), Expect = e-137,   Method: Composition-based stats.
 Identities = 239/355 (67%), Positives = 299/355 (84%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ ++ LE+LP  SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 85  WLDSIIKGDCVAALERLPDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 144

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWL+ACRRVLKPNGT+WVIGSYHNIFR+G+ LQ+L FW+LNDI+WRK+NPMP
Sbjct: 145 QAYDAFTRAWLMACRRVLKPNGTIWVIGSYHNIFRVGSQLQDLGFWLLNDIIWRKTNPMP 204

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHETLIWAS   K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 205 NFRGRRFQNAHETLIWASRDQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 264

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 265 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQSYI 324

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RI +V+PLG  ELTV+TGKR EPRVAF  ++E GL++PG +L++ +   +A V A
Sbjct: 325 DAATARIDAVEPLGKAELTVMTGKRAEPRVAFTSVIEAGLLRPGTVLSDERRRFAAIVRA 384

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           DGTL +  E GSIHR+GAKV G + CNGW FW++E+ G L  I+ LR ++R ++ 
Sbjct: 385 DGTLAANGEAGSIHRMGAKVQGFDACNGWTFWHYEENGTLKPIDALRKVIRDQMA 439


>gi|23501392|ref|NP_697519.1| modification methylase BabI [Brucella suis 1330]
 gi|161618464|ref|YP_001592351.1| modification methylase HinfI [Brucella canis ATCC 23365]
 gi|163842773|ref|YP_001627177.1| modification methylase HinfI [Brucella suis ATCC 23445]
 gi|254701294|ref|ZP_05163122.1| modification methylase HinfI [Brucella suis bv. 5 str. 513]
 gi|254703839|ref|ZP_05165667.1| modification methylase HinfI [Brucella suis bv. 3 str. 686]
 gi|254707782|ref|ZP_05169610.1| modification methylase HinfI [Brucella pinnipedialis M163/99/10]
 gi|254709634|ref|ZP_05171445.1| modification methylase HinfI [Brucella pinnipedialis B2/94]
 gi|254712950|ref|ZP_05174761.1| modification methylase HinfI [Brucella ceti M644/93/1]
 gi|254716696|ref|ZP_05178507.1| modification methylase HinfI [Brucella ceti M13/05/1]
 gi|254718664|ref|ZP_05180475.1| modification methylase HinfI [Brucella sp. 83/13]
 gi|256031127|ref|ZP_05444741.1| modification methylase HinfI [Brucella pinnipedialis M292/94/1]
 gi|256159203|ref|ZP_05457014.1| modification methylase HinfI [Brucella ceti M490/95/1]
 gi|256254530|ref|ZP_05460066.1| modification methylase HinfI [Brucella ceti B1/94]
 gi|256368944|ref|YP_003106450.1| modification methylase BabI [Brucella microti CCM 4915]
 gi|260168258|ref|ZP_05755069.1| modification methylase BabI [Brucella sp. F5/99]
 gi|260566907|ref|ZP_05837377.1| modification methylase BabI [Brucella suis bv. 4 str. 40]
 gi|261218502|ref|ZP_05932783.1| modification methylase BabI [Brucella ceti M13/05/1]
 gi|261221708|ref|ZP_05935989.1| modification methylase BabI [Brucella ceti B1/94]
 gi|261315268|ref|ZP_05954465.1| modification methylase BabI [Brucella pinnipedialis M163/99/10]
 gi|261317167|ref|ZP_05956364.1| modification methylase BabI [Brucella pinnipedialis B2/94]
 gi|261320648|ref|ZP_05959845.1| modification methylase BabI [Brucella ceti M644/93/1]
 gi|261751836|ref|ZP_05995545.1| modification methylase BabI [Brucella suis bv. 5 str. 513]
 gi|261754491|ref|ZP_05998200.1| modification methylase BabI [Brucella suis bv. 3 str. 686]
 gi|261757722|ref|ZP_06001431.1| modification methylase BabI [Brucella sp. F5/99]
 gi|265983646|ref|ZP_06096381.1| modification methylase BabI [Brucella sp. 83/13]
 gi|265988205|ref|ZP_06100762.1| modification methylase BabI [Brucella pinnipedialis M292/94/1]
 gi|265997671|ref|ZP_06110228.1| modification methylase BabI [Brucella ceti M490/95/1]
 gi|294851866|ref|ZP_06792539.1| modification methylase BabI [Brucella sp. NVSL 07-0026]
 gi|306837787|ref|ZP_07470651.1| modification methylase BabI [Brucella sp. NF 2653]
 gi|306845119|ref|ZP_07477699.1| modification methylase BabI [Brucella sp. BO1]
 gi|81847171|sp|Q8G242|MTB1_BRUSU RecName: Full=Modification methylase BabI; Short=M.BabI; AltName:
           Full=Adenine-specific methyltransferase BabI; AltName:
           Full=DNA methyltransferase CcrM; AltName: Full=M.CcrMI
           ortholog
 gi|223635299|sp|B0CKH7|MTB1_BRUSI RecName: Full=Modification methylase BabI; Short=M.BabI; AltName:
           Full=Adenine-specific methyltransferase BabI; AltName:
           Full=DNA methyltransferase CcrM; AltName: Full=M.CcrMI
           ortholog
 gi|223635316|sp|A9M916|MTB1_BRUC2 RecName: Full=Modification methylase BabI; Short=M.BabI; AltName:
           Full=Adenine-specific methyltransferase BabI; AltName:
           Full=DNA methyltransferase CcrM; AltName: Full=M.CcrMI
           ortholog
 gi|23347288|gb|AAN29434.1| modification methylase BabI [Brucella suis 1330]
 gi|161335275|gb|ABX61580.1| Modification methylase HinfI [Brucella canis ATCC 23365]
 gi|163673496|gb|ABY37607.1| Modification methylase HinfI [Brucella suis ATCC 23445]
 gi|255999102|gb|ACU47501.1| modification methylase BabI [Brucella microti CCM 4915]
 gi|260156425|gb|EEW91505.1| modification methylase BabI [Brucella suis bv. 4 str. 40]
 gi|260920292|gb|EEX86945.1| modification methylase BabI [Brucella ceti B1/94]
 gi|260923591|gb|EEX90159.1| modification methylase BabI [Brucella ceti M13/05/1]
 gi|261293338|gb|EEX96834.1| modification methylase BabI [Brucella ceti M644/93/1]
 gi|261296390|gb|EEX99886.1| modification methylase BabI [Brucella pinnipedialis B2/94]
 gi|261304294|gb|EEY07791.1| modification methylase BabI [Brucella pinnipedialis M163/99/10]
 gi|261737706|gb|EEY25702.1| modification methylase BabI [Brucella sp. F5/99]
 gi|261741589|gb|EEY29515.1| modification methylase BabI [Brucella suis bv. 5 str. 513]
 gi|261744244|gb|EEY32170.1| modification methylase BabI [Brucella suis bv. 3 str. 686]
 gi|262552139|gb|EEZ08129.1| modification methylase BabI [Brucella ceti M490/95/1]
 gi|264660402|gb|EEZ30663.1| modification methylase BabI [Brucella pinnipedialis M292/94/1]
 gi|264662238|gb|EEZ32499.1| modification methylase BabI [Brucella sp. 83/13]
 gi|294820455|gb|EFG37454.1| modification methylase BabI [Brucella sp. NVSL 07-0026]
 gi|306274534|gb|EFM56329.1| modification methylase BabI [Brucella sp. BO1]
 gi|306407128|gb|EFM63343.1| modification methylase BabI [Brucella sp. NF 2653]
          Length = 377

 Score =  491 bits (1263), Expect = e-137,   Method: Composition-based stats.
 Identities = 243/355 (68%), Positives = 299/355 (84%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE+LP  SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 19  WLDSIIKGDCVSALERLPDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 78

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 79  QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 138

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHETLIWAS   K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 139 NFRGRRFQNAHETLIWASRDQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 198

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 199 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 258

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RI +V+PLG  ELTV+TGKR EPRVAF  ++E GL++PG +L + +   +A V A
Sbjct: 259 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRA 318

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           DGTL +  E GSIHR+GA+V G + CNGW FW+FE+ G L  I+ LR ++R+++ 
Sbjct: 319 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQMA 373


>gi|148560742|ref|YP_001258505.1| modification methylase BabI [Brucella ovis ATCC 25840]
 gi|223635317|sp|A5VP58|MTB1_BRUO2 RecName: Full=Modification methylase BabI; Short=M.BabI; AltName:
           Full=Adenine-specific methyltransferase BabI; AltName:
           Full=DNA methyltransferase CcrM; AltName: Full=M.CcrMI
           ortholog
 gi|148371999|gb|ABQ61978.1| modification methylase BabI [Brucella ovis ATCC 25840]
          Length = 386

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 243/355 (68%), Positives = 299/355 (84%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE+LP  SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 28  WLDSIIKGDCVSALERLPDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 87

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 88  QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 147

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHETLIWAS   K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 148 NFRGRRFQNAHETLIWASRDQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 207

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 208 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 267

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RI +V+PLG  ELTV+TGKR EPRVAF  ++E GL++PG +L + +   +A V A
Sbjct: 268 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRA 327

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           DGTL +  E GSIHR+GA+V G + CNGW FW+FE+ G L  I+ LR ++R+++ 
Sbjct: 328 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQMA 382


>gi|153007950|ref|YP_001369165.1| DNA methylase N-4/N-6 domain-containing protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|223635322|sp|A6WWI2|MTB1_OCHA4 RecName: Full=Modification methylase BabI; Short=M.BabI; AltName:
           Full=Adenine-specific methyltransferase BabI; AltName:
           Full=DNA methyltransferase CcrM; AltName: Full=M.CcrMI
           ortholog
 gi|151559838|gb|ABS13336.1| DNA methylase N-4/N-6 domain protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 377

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 238/355 (67%), Positives = 298/355 (83%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ ++ LE+LP  SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 19  WLDSIIKGDCVAALERLPDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 78

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWL+ACRRVLKPNGT+WVIGSYHNIFR+G+ LQ+L FW+LND++WRK+NPMP
Sbjct: 79  QAYDAFTRAWLMACRRVLKPNGTIWVIGSYHNIFRVGSQLQDLGFWLLNDVIWRKTNPMP 138

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHETLIWAS   K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 139 NFRGRRFQNAHETLIWASRDQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 198

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 199 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQSYI 258

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RI +V+PLG  ELTV+TGKR EPRVAF  ++E GL++PG +L + +   +A V A
Sbjct: 259 DAATARIDAVEPLGKAELTVMTGKRAEPRVAFTSVLEAGLLRPGTVLCDERRRFAAIVRA 318

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           DGTL +  E GSIHR+GAKV G + CNGW FW++E+ G L  I+ LR ++R ++ 
Sbjct: 319 DGTLAANGEAGSIHRIGAKVQGFDACNGWTFWHYEENGALKPIDALRKVIRDQMA 373


>gi|114707681|ref|ZP_01440576.1| adenine DNA methyltransferase [Fulvimarina pelagi HTCC2506]
 gi|114536925|gb|EAU40054.1| adenine DNA methyltransferase [Fulvimarina pelagi HTCC2506]
          Length = 378

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 233/373 (62%), Positives = 296/373 (79%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           M +   + ++       +W+++I++G+ ++ +E+LPA+SVD+IFADPPYNLQL G L RP
Sbjct: 1   MKRSGPVLVHSQPFPEIDWRNQILQGHCVTEMERLPAESVDVIFADPPYNLQLGGDLMRP 60

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           DHS VDAV D+WD+F SF+AYDAFTRAWLLA RRVLKPNGTLWVIGSYHNIFR+G  LQ+
Sbjct: 61  DHSKVDAVDDAWDQFESFQAYDAFTRAWLLAARRVLKPNGTLWVIGSYHNIFRVGASLQD 120

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           L +WILNDIVWRK+NPMPNFRG+RFQNAHETLIWAS   KAK YTFNY+ALKA+N+DVQM
Sbjct: 121 LGYWILNDIVWRKTNPMPNFRGKRFQNAHETLIWASRDAKAKSYTFNYEALKASNDDVQM 180

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           RSDWL PICSG ERL+N+DG K HPTQKPEALL+RIL++STKPGD++LDPFFG+GT+GAV
Sbjct: 181 RSDWLFPICSGGERLKNEDGAKAHPTQKPEALLARILLASTKPGDVVLDPFFGTGTTGAV 240

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           AK+L R F+GIE +++Y+ IA +RIA V+PL + +L +  GKR EPRV F  LVE GL+ 
Sbjct: 241 AKRLGRDFVGIEREEEYVKIAQQRIADVEPLDDDDLKMAAGKRAEPRVPFASLVEAGLVT 300

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
           PG  LT+++    A V ADGT+  G +  SIHR+GA+V G + CNGW FW+ ++   L  
Sbjct: 301 PGTELTDSKRRYRARVRADGTIAVGDDAASIHRIGARVQGLDACNGWTFWHVKEGKNLTP 360

Query: 361 INTLRILVRKELY 373
           I+ LR L R+ + 
Sbjct: 361 IDELRQLARQRMA 373


>gi|17987727|ref|NP_540361.1| adenine-specific methyltransferase [Brucella melitensis bv. 1 str.
           16M]
 gi|81851486|sp|Q8YFS6|MTB1_BRUME RecName: Full=Modification methylase BabI; Short=M.BabI; AltName:
           Full=Adenine-specific methyltransferase BabI; AltName:
           Full=DNA methyltransferase CcrM; AltName: Full=M.CcrMI
           ortholog
 gi|17983446|gb|AAL52625.1| adenine-specific methyltransferase [Brucella melitensis bv. 1 str.
           16M]
          Length = 403

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 242/355 (68%), Positives = 298/355 (83%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE+L   SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 45  WLDSIIKGDCVSALERLSDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 104

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 105 QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 164

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHETLIWAS   K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 165 NFRGRRFQNAHETLIWASRDQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 224

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 225 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 284

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RI +V+PLG  ELTV+TGKR EPRVAF  ++E GL++PG +L + +   +A V A
Sbjct: 285 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRA 344

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           DGTL +  E GSIHR+GA+V G + CNGW FW+FE+ G L  I+ LR ++R+++ 
Sbjct: 345 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQMA 399


>gi|256060624|ref|ZP_05450790.1| modification methylase BabI [Brucella neotomae 5K33]
 gi|261324621|ref|ZP_05963818.1| modification methylase BabI [Brucella neotomae 5K33]
 gi|261300601|gb|EEY04098.1| modification methylase BabI [Brucella neotomae 5K33]
          Length = 377

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 243/355 (68%), Positives = 299/355 (84%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE+LP  SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 19  WLDSIIKGDCVSALERLPDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 78

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 79  QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 138

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHETLIWAS   K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 139 NFRGRRFQNAHETLIWASRDQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 198

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 199 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 258

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RI +V+PLG  ELTV+TGKR EPRVAF  ++E GL++PG +L + +   +A V A
Sbjct: 259 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGIVLCDERRRFAAIVRA 318

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           DGTL +  E GSIHR+GA+V G + CNGW FW+FE+ G L  I+ LR ++R+++ 
Sbjct: 319 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQMA 373


>gi|240850100|ref|YP_002971493.1| adenine DNA methyltransferase [Bartonella grahamii as4aup]
 gi|240267223|gb|ACS50811.1| adenine DNA methyltransferase [Bartonella grahamii as4aup]
          Length = 378

 Score =  488 bits (1257), Expect = e-136,   Method: Composition-based stats.
 Identities = 245/361 (67%), Positives = 299/361 (82%)

Query: 12  NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
              S   W++KI KG+ +SVLEKLP  SVD+IFADPPYNLQL+G LYRPDHSLVDAV D+
Sbjct: 12  RTPSQMPWRNKIFKGDCVSVLEKLPKHSVDMIFADPPYNLQLDGALYRPDHSLVDAVDDA 71

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           WD+F SF AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR+GT LQ+L FW+LNDI+W
Sbjct: 72  WDQFESFAAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRVGTALQDLGFWMLNDIIW 131

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
           RK+NPMPNFRGRRFQNAHETLIWA    K K YTFNYDALKAANED+QMRSDWL P+C+G
Sbjct: 132 RKNNPMPNFRGRRFQNAHETLIWAVRDQKDKKYTFNYDALKAANEDLQMRSDWLFPLCTG 191

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           +ERL++  G KLHPTQKP+ALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK L R F+GI
Sbjct: 192 AERLKDDSGRKLHPTQKPQALLARIIMASSKPGDVILDPFFGSGTTGAVAKLLGRDFVGI 251

Query: 252 EMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
           E +QDYID A +RIA+V+PL   EL +L  K+ EPRVAFN L+E GL+ PG++L + +  
Sbjct: 252 EREQDYIDAACERIAAVKPLAQPELAILDRKKAEPRVAFNSLLEAGLLYPGEVLYDRKKQ 311

Query: 312 ISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           +SA V ADGT++ G E GSIH +G K   S++CNGW FWY+E+ G L SI+ LR+++R +
Sbjct: 312 VSAIVRADGTIMHGGEAGSIHAMGRKAQDSQSCNGWTFWYYEENGRLKSIDHLRMIIRSQ 371

Query: 372 L 372
           +
Sbjct: 372 M 372


>gi|163867893|ref|YP_001609097.1| adenine DNA methyltransferase protein CcrM [Bartonella tribocorum
           CIP 105476]
 gi|161017544|emb|CAK01102.1| adenine DNA methyltransferase protein CcrM [Bartonella tribocorum
           CIP 105476]
          Length = 378

 Score =  488 bits (1256), Expect = e-136,   Method: Composition-based stats.
 Identities = 243/361 (67%), Positives = 298/361 (82%)

Query: 12  NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
              S   W++KI KG+ ++VLEKLP  SVD+IFADPPYNLQL G LYRPDHSLVDAV D+
Sbjct: 12  RTPSQMPWRNKIFKGDCVAVLEKLPKHSVDMIFADPPYNLQLEGALYRPDHSLVDAVDDA 71

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           WD+F SF AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDI+W
Sbjct: 72  WDQFESFAAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTALQDLGFWMLNDIIW 131

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
           RK+NPMPNFRGRRFQNAHETLIWA    K K YTFNYDALKAANED+QMRSDWL P+C+G
Sbjct: 132 RKNNPMPNFRGRRFQNAHETLIWAVRDQKDKKYTFNYDALKAANEDLQMRSDWLFPLCTG 191

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           +ERL++  G KLHPTQKP+ALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK L R F+GI
Sbjct: 192 AERLKDDSGRKLHPTQKPQALLARIIMASSKPGDVILDPFFGSGTTGAVAKLLGRDFVGI 251

Query: 252 EMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
           E +QDYID A +RIA+V+PL   EL +L  K+ EPRVAFN L+E GL+ PG++L + +  
Sbjct: 252 EREQDYIDAACERIAAVKPLAQPELAILDRKKAEPRVAFNSLLEAGLLYPGEVLYDRKKQ 311

Query: 312 ISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           +SA V ADGT++ G E GSIH +G K   S++CNGW FWY+E+ G L SI+ LR+++R +
Sbjct: 312 VSAIVRADGTIMHGGEAGSIHAMGRKAQDSQSCNGWTFWYYEENGRLKSIDHLRMIIRSQ 371

Query: 372 L 372
           +
Sbjct: 372 M 372


>gi|225852027|ref|YP_002732260.1| modification methylase HinfI [Brucella melitensis ATCC 23457]
 gi|256044204|ref|ZP_05447111.1| adenine-specific methyltransferase [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256113019|ref|ZP_05453916.1| adenine-specific methyltransferase [Brucella melitensis bv. 3 str.
           Ether]
 gi|256264469|ref|ZP_05467001.1| modification methylase BabI [Brucella melitensis bv. 2 str. 63/9]
 gi|260563563|ref|ZP_05834049.1| modification methylase BabI [Brucella melitensis bv. 1 str. 16M]
 gi|265990620|ref|ZP_06103177.1| modification methylase BabI [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994452|ref|ZP_06107009.1| modification methylase BabI [Brucella melitensis bv. 3 str. Ether]
 gi|225640392|gb|ACO00306.1| Modification methylase HinfI [Brucella melitensis ATCC 23457]
 gi|260153579|gb|EEW88671.1| modification methylase BabI [Brucella melitensis bv. 1 str. 16M]
 gi|262765565|gb|EEZ11354.1| modification methylase BabI [Brucella melitensis bv. 3 str. Ether]
 gi|263001404|gb|EEZ13979.1| modification methylase BabI [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094800|gb|EEZ18538.1| modification methylase BabI [Brucella melitensis bv. 2 str. 63/9]
          Length = 377

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 242/355 (68%), Positives = 298/355 (83%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE+L   SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 19  WLDSIIKGDCVSALERLSDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 78

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 79  QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 138

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHETLIWAS   K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 139 NFRGRRFQNAHETLIWASRDQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 198

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 199 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 258

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RI +V+PLG  ELTV+TGKR EPRVAF  ++E GL++PG +L + +   +A V A
Sbjct: 259 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRA 318

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           DGTL +  E GSIHR+GA+V G + CNGW FW+FE+ G L  I+ LR ++R+++ 
Sbjct: 319 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQMA 373


>gi|163760352|ref|ZP_02167434.1| modification methylase BabI [Hoeflea phototrophica DFL-43]
 gi|162282303|gb|EDQ32592.1| modification methylase BabI [Hoeflea phototrophica DFL-43]
          Length = 377

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 238/374 (63%), Positives = 299/374 (79%), Gaps = 1/374 (0%)

Query: 1   MSQKNSLA-INENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR 59
           M++  S A +   + +   W D IIKG+ ++ LE LP  SVD+IFADPPYNLQL G L R
Sbjct: 1   MARSVSFAKVPTVKAAPQSWLDTIIKGDCVAALEALPENSVDVIFADPPYNLQLGGDLAR 60

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
           PD S+VDAV D WD+F SF AYDAFTRAWL+ACRRVLKPNGT+WVIGSYHNIFR+G+ LQ
Sbjct: 61  PDQSVVDAVNDHWDQFESFAAYDAFTRAWLMACRRVLKPNGTIWVIGSYHNIFRVGSQLQ 120

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
           ++ FW+LNDIVWRK+NPMPNFRGRRFQNAHET+IWAS    AK YTFNY+A+KA+N+DVQ
Sbjct: 121 DIGFWLLNDIVWRKTNPMPNFRGRRFQNAHETMIWASRDQNAKSYTFNYEAMKASNDDVQ 180

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
           MRSDWL PIC+G+ERL+  DG+K+HPTQKPEALL+R+L++S+KPGD++LDPFFGSGT+GA
Sbjct: 181 MRSDWLFPICTGAERLKGDDGKKVHPTQKPEALLARVLMASSKPGDVVLDPFFGSGTTGA 240

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLI 299
           VA++L R F+GIE +QDYID A  RI +V+PLG  ELTV+TGKR EPRVAFN+L+E G +
Sbjct: 241 VARRLGRHFVGIEREQDYIDAARARIDAVEPLGKNELTVMTGKRAEPRVAFNVLIEAGHV 300

Query: 300 QPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELH 359
           +PG +L +A+    A V ADGTL++  + GSIH+VGA V G + CNGW FW+ E    L 
Sbjct: 301 KPGDVLHDAKRKHQAIVRADGTLVANGQAGSIHKVGAHVQGFDACNGWTFWHLETSDGLT 360

Query: 360 SINTLRILVRKELY 373
            I+  R ++RKE+ 
Sbjct: 361 VIDEFRSVIRKEMA 374


>gi|326408521|gb|ADZ65586.1| modification methylase HinfI [Brucella melitensis M28]
 gi|326538238|gb|ADZ86453.1| modification methylase HinfI [Brucella melitensis M5-90]
          Length = 368

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 242/355 (68%), Positives = 298/355 (83%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D IIKG+ +S LE+L   SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 10  WLDSIIKGDCVSALERLSDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 69

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 70  QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 129

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHETLIWAS   K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 130 NFRGRRFQNAHETLIWASRDQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 189

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 190 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 249

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RI +V+PLG  ELTV+TGKR EPRVAF  ++E GL++PG +L + +   +A V A
Sbjct: 250 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRA 309

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           DGTL +  E GSIHR+GA+V G + CNGW FW+FE+ G L  I+ LR ++R+++ 
Sbjct: 310 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQMA 364


>gi|49475250|ref|YP_033291.1| adenine DNA methyltransferase protein [Bartonella henselae str.
           Houston-1]
 gi|49238055|emb|CAF27262.1| Adenine DNA methyltransferase protein [Bartonella henselae str.
           Houston-1]
          Length = 378

 Score =  485 bits (1248), Expect = e-135,   Method: Composition-based stats.
 Identities = 243/356 (68%), Positives = 296/356 (83%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
             W++KI+KG+ ++VLEKLP  SVD+IFADPPYNLQL G LYRPDHSLVDAV D+WD+F 
Sbjct: 17  MSWRNKILKGDCVAVLEKLPKHSVDMIFADPPYNLQLEGALYRPDHSLVDAVDDAWDQFE 76

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           +F AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR+GT LQ+L FWILNDI+WRK+NP
Sbjct: 77  NFAAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRVGTALQDLGFWILNDIIWRKNNP 136

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           MPNFRGRRFQNAHETLIWA    K K YTFNYDALKAANED+QMRSDWL P+C+G+ERL+
Sbjct: 137 MPNFRGRRFQNAHETLIWAVRDQKDKKYTFNYDALKAANEDIQMRSDWLFPLCTGAERLK 196

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           ++ G KLHPTQKP+ LL+RI+++S+KPGDIILDPFFGSGT+GAVAK L R F+GIE +Q 
Sbjct: 197 DEAGRKLHPTQKPQPLLARIIIASSKPGDIILDPFFGSGTTGAVAKLLGRDFVGIEREQQ 256

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATV 316
           YID A +RIA ++PL   EL +L  K+ EPRVAFN L+E GLI PG++L + +  +SA V
Sbjct: 257 YIDAAYERIAKIKPLNEPELAILDRKKAEPRVAFNSLLEAGLICPGEVLYDRKKQVSAIV 316

Query: 317 CADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
            ADGTL+ G E GSIH +G K    ++CNGW FWY+E+ G+L SIN LR+++R ++
Sbjct: 317 RADGTLMYGGEAGSIHAMGRKAQDLQSCNGWTFWYYEEDGQLKSINELRMVIRSQM 372


>gi|197104043|ref|YP_002129420.1| modification methylase [Phenylobacterium zucineum HLK1]
 gi|196477463|gb|ACG76991.1| modification methylase [Phenylobacterium zucineum HLK1]
          Length = 359

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 214/352 (60%), Positives = 268/352 (76%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D II+G+ +  L+KLP +SVDL+FADPPYNLQL G L RPD+S VDAV D WD+F SFEA
Sbjct: 6   DTIIEGDCLEALKKLPDRSVDLVFADPPYNLQLGGDLLRPDNSKVDAVDDHWDQFESFEA 65

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YDAFTRAWL  CRRVLK +G +WVIGSYHNIFR+G  +Q+L FWILNDIVWRKSNPMPNF
Sbjct: 66  YDAFTRAWLKECRRVLKDDGAIWVIGSYHNIFRVGVAVQDLGFWILNDIVWRKSNPMPNF 125

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWAS S   + YTFNYDA+K AN+++QMRSDW +P+C+G ERL++  G
Sbjct: 126 KGTRFTNAHETLIWASKSRGGRRYTFNYDAMKMANDELQMRSDWTLPLCTGDERLKDGSG 185

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K HPTQKPEALL R++++STKPGD+ILDPFFG+GT+GAVA++L R F+GIE + +Y  +
Sbjct: 186 AKAHPTQKPEALLHRVILASTKPGDVILDPFFGTGTTGAVARRLGRKFVGIEREAEYAAL 245

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KRIA V P    E+ V   KR EPRV F  ++E GL++PG +L   +G  +A V ADG
Sbjct: 246 ARKRIAQVTPATADEMAVTGSKRAEPRVPFGTILEAGLLRPGDVLYCPKGRNAARVRADG 305

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           +L+ G   GSIH+VGA V  +  CNGW +W+F+    L  I+ LR  VR +L
Sbjct: 306 SLVVGEVSGSIHKVGALVQSAPACNGWTYWHFKSDKGLAPIDVLRAKVRSQL 357


>gi|260432296|ref|ZP_05786267.1| modification methylase CcrMI [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260416124|gb|EEX09383.1| modification methylase CcrMI [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 367

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 214/368 (58%), Positives = 272/368 (73%), Gaps = 1/368 (0%)

Query: 7   LAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           +   + + +     + I+ G+ I V+  LP  SVDLIFADPPYNLQL GQL+RPD+S VD
Sbjct: 1   MTKTQTKGAAALPLNTILSGDCIEVMNSLPEASVDLIFADPPYNLQLKGQLHRPDNSQVD 60

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
           AV D WD+FSSF AYD FTRAWL A  R+LKPNG +WVIGSYHNIFR+G+ LQ+  +WIL
Sbjct: 61  AVDDHWDQFSSFAAYDKFTRAWLKAAHRLLKPNGAIWVIGSYHNIFRVGSALQDAGYWIL 120

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           ND++WRKSNPMPNFRG+RF NAHET+IWAS    AK YTFNY+ALKA NE VQMRSDW++
Sbjct: 121 NDVIWRKSNPMPNFRGKRFTNAHETMIWASKREGAK-YTFNYEALKALNEGVQMRSDWVL 179

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           PIC+G ERL++++G+K HPTQKPE+LL R+L+ ST PGD++LDPFFG+GT+GAVAK L R
Sbjct: 180 PICTGHERLKDENGDKAHPTQKPESLLHRVLIGSTNPGDVVLDPFFGTGTTGAVAKMLGR 239

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILT 306
            FIGIE ++ Y  +A KRIA V+      L V   KR EPRV F  LVERG+++PG+ L 
Sbjct: 240 EFIGIEREESYRKVAEKRIAKVRKFDRDALEVSASKRAEPRVPFGQLVERGMLRPGEELY 299

Query: 307 NAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRI 366
           +      A V ADGTL+     GSIH+VGA +  + +CNGW +W F++ G+   I+ LR 
Sbjct: 300 SMNRRHKAKVRADGTLVGDNIKGSIHQVGAHLENAPSCNGWTYWCFKREGKTVPIDVLRQ 359

Query: 367 LVRKELYN 374
            +R EL+N
Sbjct: 360 QIRAELHN 367


>gi|319898539|ref|YP_004158632.1| adenine DNA methyltransferase protein CcrM [Bartonella clarridgeiae
           73]
 gi|319402503|emb|CBI76046.1| adenine DNA methyltransferase protein CcrM [Bartonella clarridgeiae
           73]
          Length = 386

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 237/360 (65%), Positives = 297/360 (82%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
            +S  +W++KI KG+ ++VLEKLP  SVD+IFADPPYNLQL G LYRPDHS V+AV D+W
Sbjct: 21  TSSQTQWRNKIFKGDCVAVLEKLPKHSVDMIFADPPYNLQLEGVLYRPDHSRVNAVDDAW 80

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           D+F SF AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDI+WR
Sbjct: 81  DQFESFSAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTALQDLGFWMLNDIIWR 140

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K+NPMPNFRGRRFQNAHETLIWA    K K YTFNY+ALKAANED QMRSDWL P+C+G+
Sbjct: 141 KNNPMPNFRGRRFQNAHETLIWAVRDQKDKKYTFNYNALKAANEDRQMRSDWLFPLCTGA 200

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           ERL++K G KLHPTQKP++LL+RI+++S+KPGD+ILDPFFGSGT+GAVAK   R F+GIE
Sbjct: 201 ERLKDKVGRKLHPTQKPQSLLARIIIASSKPGDVILDPFFGSGTTGAVAKLFGRDFVGIE 260

Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNI 312
            +Q YID A +RIA+++PL   EL +L  K+TEPRVAF+ L++ GL+ PG +L + +  I
Sbjct: 261 REQHYIDAACERIAAIKPLAESELEILKTKKTEPRVAFSSLLDLGLLYPGSVLYDKKKEI 320

Query: 313 SATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           SA V ADGT++ G E GSIH +G K   S++CNGW FWY+E+ G L SI+ LR+++R ++
Sbjct: 321 SAIVRADGTIMYGGEAGSIHMIGRKAQASQSCNGWTFWYYEENGLLKSIDDLRMMIRSQM 380


>gi|254465616|ref|ZP_05079027.1| modification methylase SmeIP [Rhodobacterales bacterium Y4I]
 gi|206686524|gb|EDZ47006.1| modification methylase SmeIP [Rhodobacterales bacterium Y4I]
          Length = 367

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 213/354 (60%), Positives = 268/354 (75%), Gaps = 1/354 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + II G+ I  +  LPA SVDLIFADPPYNLQL GQL+RPD+S VDAV D WD+FSSF A
Sbjct: 15  NTIIGGDCIEAMNSLPANSVDLIFADPPYNLQLKGQLHRPDNSKVDAVDDHWDQFSSFAA 74

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL A RRVLKPNG++WVIGSYHNIFR+G +LQ+  +W+LND++WRKSNPMPNF
Sbjct: 75  YDQFTREWLKAARRVLKPNGSIWVIGSYHNIFRVGALLQDEGYWVLNDVIWRKSNPMPNF 134

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+RF NAHET+IWAS S  AK YTFNY+ALKA NE +QMRSDW++PIC+G ER+++++G
Sbjct: 135 RGKRFTNAHETMIWASKSEGAK-YTFNYEALKALNEGIQMRSDWVLPICTGHERIKDENG 193

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPE+LL RILV +T PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  +
Sbjct: 194 DKAHPTQKPESLLHRILVGATNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREEAYRKV 253

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KRI +V+      L V   KR  PRV F  LVERG+++PG+ L +      A V ADG
Sbjct: 254 AEKRIKAVRKFDREALEVSASKRAAPRVPFGQLVERGMLRPGEELYSMNRRHKAKVRADG 313

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           TLI     GSIH+VGA +  + +CNGW +W F++ G+   I+ LR  +R E+ N
Sbjct: 314 TLIGDNIKGSIHQVGAHLENAPSCNGWTYWCFKRDGKTVPIDVLRQQIRAEMQN 367


>gi|254512453|ref|ZP_05124520.1| modification methylase SmeIP [Rhodobacteraceae bacterium KLH11]
 gi|221536164|gb|EEE39152.1| modification methylase SmeIP [Rhodobacteraceae bacterium KLH11]
          Length = 367

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 214/354 (60%), Positives = 267/354 (75%), Gaps = 1/354 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I+ G+ I  +  LP  SVDLIFADPPYNLQL GQL+RPD+S VDAV D WD+FSSF A
Sbjct: 15  NTILSGDCIEAMNSLPEASVDLIFADPPYNLQLKGQLHRPDNSQVDAVDDHWDQFSSFGA 74

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTRAWL A  R+LKPNG +WVIGSYHNIFR+G+ LQ+  +WILND+VWRKSNPMPNF
Sbjct: 75  YDQFTRAWLKAAHRLLKPNGAIWVIGSYHNIFRVGSALQDAGYWILNDVVWRKSNPMPNF 134

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+RF NAHET+IWAS    AK YTFNY+ALKA NE VQMRSDW++PIC+G ERL++++G
Sbjct: 135 RGKRFTNAHETMIWASKREGAK-YTFNYEALKALNEGVQMRSDWVLPICTGHERLKDENG 193

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPE+LL R+L+ ST PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  +
Sbjct: 194 DKAHPTQKPESLLHRVLIGSTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREESYRKV 253

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KRIA V+      L V   KR EPRV F  LVERG+++PG+ L +      A V ADG
Sbjct: 254 AEKRIAKVRKFDREALEVSASKRAEPRVPFGQLVERGMLRPGEELYSMNKRHKAKVRADG 313

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           TL+     GSIH+VGA +  + +CNGW +W F++ G+   I+ LR  +R EL+N
Sbjct: 314 TLVGDNVKGSIHQVGAHLENAPSCNGWTYWCFKREGKTVPIDVLRQQIRAELHN 367


>gi|49474012|ref|YP_032054.1| adenine DNA methyltransferase protein [Bartonella quintana str.
           Toulouse]
 gi|49239515|emb|CAF25872.1| Adenine DNA methyltransferase protein [Bartonella quintana str.
           Toulouse]
          Length = 378

 Score =  481 bits (1238), Expect = e-134,   Method: Composition-based stats.
 Identities = 242/361 (67%), Positives = 297/361 (82%)

Query: 12  NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
             +S   W++KI+KG+ ++VLEKLP  SVD+IFADPPYNLQL+G LYRPDHSLVDAV D+
Sbjct: 12  RTSSQTSWRNKILKGDCVAVLEKLPKHSVDVIFADPPYNLQLDGALYRPDHSLVDAVDDA 71

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           WD+F SF AYDAFTRAWLLACRRVLKP+GTLWVIGSYHNIFR+GT LQ+L FW+LNDI+W
Sbjct: 72  WDQFESFAAYDAFTRAWLLACRRVLKPHGTLWVIGSYHNIFRVGTALQDLGFWMLNDIIW 131

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
           RK+NPMPNFRGRRFQNAHETLIWA    K K YTFNYDALKA NEDVQMRSDWL P+C+G
Sbjct: 132 RKNNPMPNFRGRRFQNAHETLIWAVRDQKDKKYTFNYDALKAGNEDVQMRSDWLFPLCTG 191

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           +ERL+++ G KLHPTQKP+ LL+RI+++S+KPGDIILDPFFGSGT+GAVAK L R F+GI
Sbjct: 192 AERLKDEAGRKLHPTQKPQTLLTRIIMASSKPGDIILDPFFGSGTTGAVAKLLGRDFVGI 251

Query: 252 EMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
           E +Q YID A +RIA+V+PL   EL +L  K+ EPRVAFN L+E GL+ PG++L + +  
Sbjct: 252 EREQQYIDAAYERIAAVEPLNKPELAILDRKKAEPRVAFNSLLEAGLLCPGEVLYDRKKR 311

Query: 312 ISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           +SA V ADGTL+   E GSIH +G K   S++CNGW FWY+E+ G L SI+ LR+++R  
Sbjct: 312 VSAIVRADGTLMYSGEAGSIHAMGRKAQDSQSCNGWTFWYYEENGRLKSIDGLRMIIRSR 371

Query: 372 L 372
           +
Sbjct: 372 M 372


>gi|310817213|ref|YP_003965177.1| modification methylase [Ketogulonicigenium vulgare Y25]
 gi|308755948|gb|ADO43877.1| modification methylase [Ketogulonicigenium vulgare Y25]
          Length = 367

 Score =  481 bits (1237), Expect = e-134,   Method: Composition-based stats.
 Identities = 216/352 (61%), Positives = 272/352 (77%), Gaps = 1/352 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D II G+ I  +  LP  S+DLIFADPPYNLQL G+L+RPD+S VDAV D WD+F SF A
Sbjct: 15  DSIIAGDCIDAMRALPDASIDLIFADPPYNLQLKGELHRPDNSRVDAVDDHWDQFDSFAA 74

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YDAF+RAWL   RR+LKPNG +WVIGSYHNIFR+G  LQN  +W+LND++WRKSNPMPNF
Sbjct: 75  YDAFSRAWLAEARRLLKPNGAIWVIGSYHNIFRLGAELQNQGYWLLNDVIWRKSNPMPNF 134

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+R  NAHETLIWA+ S  AK  TFNY+ALKA NE VQMRSDW++PIC+G ERL+  DG
Sbjct: 135 RGKRLTNAHETLIWAAKSENAKP-TFNYEALKALNEGVQMRSDWVLPICTGHERLKGDDG 193

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K HPTQKPE+LL R+L+ +T PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  +
Sbjct: 194 AKAHPTQKPESLLHRVLIGTTNPGDVVLDPFFGTGTTGAVAKMLGRHFIGIEREESYRKV 253

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           AT+R+A V+PL    L V T KR EPRVAF LLVERG+++PG+ L +  G  SA V ADG
Sbjct: 254 ATRRLAKVRPLSAEALAVTTSKRAEPRVAFGLLVERGMLRPGEELQSLNGRHSAKVRADG 313

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           TL++    GSIH+VGA++ G+ +CNGW +W+F++ G+   I+ LR  +R E+
Sbjct: 314 TLVATDHTGSIHQVGARLEGAPSCNGWTYWHFKRDGQNVPIDALRQQIRDEM 365


>gi|89070018|ref|ZP_01157349.1| modification methylase [Oceanicola granulosus HTCC2516]
 gi|89044355|gb|EAR50493.1| modification methylase [Oceanicola granulosus HTCC2516]
          Length = 368

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 206/353 (58%), Positives = 266/353 (75%), Gaps = 1/353 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I+ G+ I  +  LP  S+DLIFADPPYNLQL G L+RPD+S VDAV D+WD+F++FE 
Sbjct: 15  NTILSGDCIEAMRTLPDASIDLIFADPPYNLQLKGDLHRPDNSRVDAVDDAWDRFATFET 74

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YDAFTRAWL   RR+LKP G +WVIGSYHN+FR+G  LQN  +WILND+VWRKSNPMPNF
Sbjct: 75  YDAFTRAWLAEARRLLKPTGAIWVIGSYHNVFRLGAELQNQGYWILNDVVWRKSNPMPNF 134

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+R  NAHETLIWAS S  +K YTFNY+ALKA NE  QMRSDW++PIC+G ERL++ +G
Sbjct: 135 RGKRLTNAHETLIWASKSEGSK-YTFNYEALKALNEGTQMRSDWVLPICTGHERLKDANG 193

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPE+LL R+L+ +T PGD++LDPFFG+GT+GAVAK L R +IGIE +  Y ++
Sbjct: 194 DKAHPTQKPESLLHRVLLGTTNPGDVVLDPFFGTGTTGAVAKMLGRDWIGIEREAAYREV 253

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  R+  ++      L V T KR EPRV F  LVERG+++PG++LT+  G  SA V ADG
Sbjct: 254 AEARLKRIRKYDRDALAVTTSKRAEPRVPFGQLVERGMLRPGEVLTSLNGQKSAKVRADG 313

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           TL++    GSIH+VGA + G+ +CNGW +W F + G+   I+ LR  +R E+ 
Sbjct: 314 TLVADDVKGSIHQVGAHLEGAPSCNGWTYWCFRRDGKTVPIDLLRQQIRAEMA 366


>gi|319406873|emb|CBI80508.1| adenine DNA methyltransferase protein CcrM [Bartonella sp. 1-1C]
          Length = 378

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 238/360 (66%), Positives = 299/360 (83%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
            +S  +W++KI KG+ ++VLEKLP  SVD+IFADPPYNLQL G LYRPD+S VDAV D+W
Sbjct: 13  TSSQTQWRNKIFKGDCVAVLEKLPKHSVDVIFADPPYNLQLEGVLYRPDYSRVDAVDDAW 72

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           D+F SF AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDI+WR
Sbjct: 73  DQFESFAAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTALQDLGFWMLNDIIWR 132

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K+NPMPNFRGRRFQNAHETLIWA    K K YTFNYDALKAANED QMRSDWL P+C+G+
Sbjct: 133 KNNPMPNFRGRRFQNAHETLIWAVRDQKDKKYTFNYDALKAANEDRQMRSDWLFPLCTGA 192

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           ERL++K G KLHPTQKP++LL+RI+++S+KPGD+ILDPFFGSGT+GAVAK L R+F+GIE
Sbjct: 193 ERLKDKIGRKLHPTQKPQSLLARIIMASSKPGDVILDPFFGSGTTGAVAKLLGRNFVGIE 252

Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNI 312
            +Q YID A++RIA+V+PL   EL +L  K+ EPR+AF+ L++ GL+ PG IL + +  +
Sbjct: 253 REQHYIDAASERIAAVKPLAKSELEILKTKKAEPRIAFSSLLDAGLLYPGSILYDKKKEV 312

Query: 313 SATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           SA V ADGT++   E GSIH +G K   S++CNGW FWY+E+ G L SI++LR++VR ++
Sbjct: 313 SALVRADGTIMYDGEAGSIHMIGRKAQASQSCNGWTFWYYEENGLLKSIDSLRMMVRSQM 372


>gi|56698274|ref|YP_168647.1| modification methylase [Ruegeria pomeroyi DSS-3]
 gi|56680011|gb|AAV96677.1| modification methylase [Ruegeria pomeroyi DSS-3]
          Length = 367

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 217/354 (61%), Positives = 269/354 (75%), Gaps = 1/354 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I+ G+ I V+  +P  SVDLIFADPPYNLQL GQL+RPD+S VDAV D WD+FSSF A
Sbjct: 15  NTIVSGDCIDVMNAMPEASVDLIFADPPYNLQLKGQLHRPDNSQVDAVDDHWDQFSSFAA 74

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTRAWL A RR+LKPNG +WVIGSYHNIFR+G+ LQ+  +WILND+VWRKSNPMPNF
Sbjct: 75  YDQFTRAWLKAARRLLKPNGAIWVIGSYHNIFRVGSALQDAGYWILNDVVWRKSNPMPNF 134

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+RF NAHET+IWAS S   K YTFNY+ALKA NE VQMRSDW++PIC+G ER+++++G
Sbjct: 135 RGKRFTNAHETMIWASKSEGGK-YTFNYEALKALNEGVQMRSDWVMPICTGHERIKDENG 193

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPEALL R+LVSST PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  +
Sbjct: 194 DKAHPTQKPEALLHRVLVSSTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREEAYRKV 253

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KRIA V+      L V   KR EPR+ F  LVERG+++PG+ L +      A V ADG
Sbjct: 254 AEKRIAKVRKFDREALEVSASKRAEPRIPFGQLVERGMLRPGEELYSMNQRHKAKVRADG 313

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           TLI     GSIH+VGA +  + +CNGW +W F++ G+   I+ LR  +R EL N
Sbjct: 314 TLIGQNIKGSIHQVGAHLENAPSCNGWTYWCFKRDGKTVPIDVLRQQIRAELEN 367


>gi|319784679|ref|YP_004144155.1| DNA methylase N-4/N-6 domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170567|gb|ADV14105.1| DNA methylase N-4/N-6 domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 377

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 235/356 (66%), Positives = 292/356 (82%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           EW D I+KG+ ++ L++LP KS+D+IFADPPYNLQL+G L+RPD S VDAV D WD+F S
Sbjct: 18  EWLDTILKGDCVAALDRLPEKSIDVIFADPPYNLQLDGDLHRPDQSKVDAVDDDWDQFES 77

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           FEAYDAFTRAWLLA RRVLKPNGT+WVIGSYHNIFR+G  +Q+L FWILND+VWRK+NPM
Sbjct: 78  FEAYDAFTRAWLLAARRVLKPNGTIWVIGSYHNIFRVGAKMQDLGFWILNDVVWRKTNPM 137

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PNFRGRRFQNAHET+IWA+   K KGYTFNY+A+KA+N+D+QMRSDWL PIC+G ERL+N
Sbjct: 138 PNFRGRRFQNAHETMIWATRDQKGKGYTFNYEAMKASNDDIQMRSDWLFPICTGGERLKN 197

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
            +G+KLHPTQKPEALL+RI+++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +Q Y
Sbjct: 198 DNGDKLHPTQKPEALLARIMMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQAY 257

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
           ID A +RI +V+PL   +LTVLTGKR EPRVAF  L++ GL+ PG  L +A+   +A V 
Sbjct: 258 IDAANERIDAVRPLDGADLTVLTGKRAEPRVAFVSLIDTGLMMPGATLYDAKKRWAAKVR 317

Query: 318 ADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           ADGT+  G   GSIH+VGA+V G + CNGW FW++E+ G L  I+ LR + R  + 
Sbjct: 318 ADGTVAIGDSAGSIHKVGAEVQGLDACNGWTFWHYERSGGLTPIDELRRIARLGME 373


>gi|99082489|ref|YP_614643.1| DNA methylase N-4/N-6 [Ruegeria sp. TM1040]
 gi|99038769|gb|ABF65381.1| DNA methylase N-4/N-6 [Ruegeria sp. TM1040]
          Length = 389

 Score =  478 bits (1231), Expect = e-133,   Method: Composition-based stats.
 Identities = 214/353 (60%), Positives = 265/353 (75%), Gaps = 1/353 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I+ G+ I  +  LP+ S+D+IFADPPYNLQL GQL+RPD+S VDAV D WD+FSSF  
Sbjct: 37  NTILDGDCIERMASLPSNSIDMIFADPPYNLQLKGQLHRPDNSKVDAVDDEWDQFSSFGV 96

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTRAWL   RR+LKPNG LWVIGSYHNIFR+GT LQ+  FWILND+VWRKSNPMPNF
Sbjct: 97  YDQFTRAWLKEARRILKPNGALWVIGSYHNIFRVGTALQDEGFWILNDVVWRKSNPMPNF 156

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+R+ NAHET+IWAS S  AK YTFNY+ALKA NE +QMRSDW++PIC+G ERL++ +G
Sbjct: 157 RGKRYTNAHETMIWASKSEGAK-YTFNYEALKALNEGIQMRSDWVMPICTGHERLKDANG 215

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPEALL RILV ST PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  +
Sbjct: 216 DKAHPTQKPEALLHRILVGSTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREEAYRKV 275

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A +RI +V+      L V   KR EPRV F  LVERG+++PG+ L +      A V ADG
Sbjct: 276 AEERIKNVRKFDREALQVSASKRAEPRVPFGQLVERGMLRPGEELYSMNRRHKAKVRADG 335

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           TLI     GSIH+VGA +  + +CNGW +W F+K G+   I+ LR  +R E+ 
Sbjct: 336 TLIGDNIKGSIHQVGAHLENAPSCNGWTYWCFKKDGKTVPIDVLRQQIRAEMQ 388


>gi|319408230|emb|CBI81883.1| adenine DNA methyltransferase protein CcrM [Bartonella
           schoenbuchensis R1]
          Length = 378

 Score =  478 bits (1230), Expect = e-133,   Method: Composition-based stats.
 Identities = 239/355 (67%), Positives = 294/355 (82%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           +W +KI+KG+ +++LEKLP  SVD+IFADPPYNLQL   LYRPD+S VDAV D+WD+F +
Sbjct: 18  QWCNKILKGDCVAMLEKLPKHSVDMIFADPPYNLQLENTLYRPDYSRVDAVNDAWDQFEN 77

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           F AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR+GT LQ+L FW+LNDI+WRK+NPM
Sbjct: 78  FAAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRVGTALQDLGFWLLNDIIWRKNNPM 137

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PNFRGRRFQNAHETLIWA    K K YTFNY ALKAANEDVQMRSDWL P+C+G+ERL++
Sbjct: 138 PNFRGRRFQNAHETLIWAVRDQKDKKYTFNYKALKAANEDVQMRSDWLFPLCTGAERLKD 197

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           + G KLHPTQKP+ LL+RI+++S+KPGDIILDPFFGSGT+GAVAK L R+F+GIE +Q Y
Sbjct: 198 EIGRKLHPTQKPQTLLARIIMASSKPGDIILDPFFGSGTTGAVAKLLGRNFVGIEREQSY 257

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
           ID A +RIA V+PL   ELTVL  K+ EPRVAF  L+E GL+ PG IL + +  +SA V 
Sbjct: 258 IDAAHERIAMVKPLAESELTVLANKKAEPRVAFTNLLEAGLLHPGMILYDRKKRVSAIVK 317

Query: 318 ADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           ADGT++ G E GSIH +G K   S++CNGW FWY+E+ G+L SI+ LR+++R ++
Sbjct: 318 ADGTIMYGGEAGSIHMMGRKAQASQSCNGWTFWYYEEDGQLKSIDDLRMVIRSQM 372


>gi|260460279|ref|ZP_05808531.1| DNA methylase N-4/N-6 domain protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259033924|gb|EEW35183.1| DNA methylase N-4/N-6 domain protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 377

 Score =  478 bits (1230), Expect = e-133,   Method: Composition-based stats.
 Identities = 236/356 (66%), Positives = 293/356 (82%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           EW D I+KG+ ++ L++LP KS+D+IFADPPYNLQL+G L+RPD S VDAV D WD+F S
Sbjct: 18  EWLDTILKGDCVAALDRLPEKSIDVIFADPPYNLQLDGDLHRPDQSKVDAVDDDWDRFES 77

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           FEAYDAFTRAWLLA RRVLKPNGT+WVIGSYHNIFR+G  +Q+L FWILND+VWRK+NPM
Sbjct: 78  FEAYDAFTRAWLLAARRVLKPNGTIWVIGSYHNIFRVGAKMQDLGFWILNDVVWRKTNPM 137

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PNFRGRRFQNAHET+IWAS   K KGYTFNY+ALKA+N+D+QMRSDWL PIC+G ERL+N
Sbjct: 138 PNFRGRRFQNAHETMIWASRDQKGKGYTFNYEALKASNDDIQMRSDWLFPICTGGERLKN 197

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
            +G+KLHPTQKPEALL+RI+++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +Q Y
Sbjct: 198 DNGDKLHPTQKPEALLARIMMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQAY 257

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
           ID A +RI +V+PL + +LTVLTGKR EPRVAF  L++ GL+ PG  L +A+   +A V 
Sbjct: 258 IDAANERIDAVRPLEDADLTVLTGKRAEPRVAFVSLIDTGLMVPGATLYDAKKRWAAKVR 317

Query: 318 ADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           ADGT+  G   GSIH++GA+V G + CNGW FW++E+ G L  I+ LR + R  + 
Sbjct: 318 ADGTVAIGDSAGSIHKIGAEVQGLDACNGWTFWHYERSGGLTPIDELRRIARLGME 373


>gi|86136900|ref|ZP_01055478.1| modification methylase [Roseobacter sp. MED193]
 gi|85826224|gb|EAQ46421.1| modification methylase [Roseobacter sp. MED193]
          Length = 389

 Score =  477 bits (1229), Expect = e-133,   Method: Composition-based stats.
 Identities = 215/373 (57%), Positives = 267/373 (71%), Gaps = 1/373 (0%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
            +   +     + +     + II G+ I V+  LP   +DLIFADPPYNLQL  QL+RPD
Sbjct: 18  FEAEQMTKTMTKGAAALPLNTIIDGDCIDVMAGLPDNCIDLIFADPPYNLQLKNQLHRPD 77

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
           +S VDAV D WD+FSSF AYD FT  WL   RR+LKPNG +WVIGSYHNIFR+GT +Q+ 
Sbjct: 78  NSKVDAVDDHWDQFSSFAAYDDFTSRWLHQARRILKPNGAIWVIGSYHNIFRVGTAMQDE 137

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
            FWILND+VWRKSNPMPNFRG+R+ NAHET+IWAS S   K YTFNY+ALKA NE +QMR
Sbjct: 138 GFWILNDVVWRKSNPMPNFRGKRYTNAHETMIWASKSEGGK-YTFNYEALKALNEGIQMR 196

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
           SDW++PIC+G ERL+N+DGEK HPTQKPE+LL RILV ST PGD++LDPFFG+GT+GAVA
Sbjct: 197 SDWVLPICTGHERLKNEDGEKAHPTQKPESLLHRILVGSTNPGDVVLDPFFGTGTTGAVA 256

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP 301
           K L R FIGIE ++ Y  +A +RI SV+      L V T KR EPRV F  LVERG+++P
Sbjct: 257 KMLGREFIGIEQEESYRKVAAERIKSVRKFDREALQVSTSKRAEPRVPFGQLVERGMLRP 316

Query: 302 GQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSI 361
           G  L +      A V ADGTLI     GSIH+VGA +  + +CNGW +W F++ G+   I
Sbjct: 317 GDELYSMNQRHKAKVRADGTLIGDNVKGSIHQVGAHLENAPSCNGWTYWCFKRDGQTVPI 376

Query: 362 NTLRILVRKELYN 374
           + LR  +R E+ N
Sbjct: 377 DVLRQQIRAEMQN 389


>gi|83855283|ref|ZP_00948813.1| modification methylase [Sulfitobacter sp. NAS-14.1]
 gi|83941806|ref|ZP_00954268.1| modification methylase [Sulfitobacter sp. EE-36]
 gi|83843126|gb|EAP82293.1| modification methylase [Sulfitobacter sp. NAS-14.1]
 gi|83847626|gb|EAP85501.1| modification methylase [Sulfitobacter sp. EE-36]
          Length = 366

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 215/354 (60%), Positives = 265/354 (74%), Gaps = 1/354 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + II G+ I  +  LPA+SVDLIFADPPYNLQL G L+RPD+S VDAV D+WD+FSSF  
Sbjct: 14  NTIISGDCIEAMNALPAESVDLIFADPPYNLQLRGDLHRPDNSKVDAVDDAWDQFSSFAV 73

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL A RR+LKPNG +WVIGSYHNIFR+G  LQ+  FWILND+VWRKSNPMPNF
Sbjct: 74  YDKFTREWLKAARRLLKPNGAIWVIGSYHNIFRVGAALQDAGFWILNDVVWRKSNPMPNF 133

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+RF NAHET+IWA     +K YTFNY+ALKA NE +QMRSDW++PIC+G ERL+++ G
Sbjct: 134 RGKRFTNAHETMIWAGKDENSK-YTFNYEALKALNEGIQMRSDWVLPICTGHERLKDEMG 192

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPE+LL RILV ST PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  +
Sbjct: 193 DKAHPTQKPESLLHRILVGSTNPGDVVLDPFFGTGTTGAVAKMLGRDFIGIEREEAYRKV 252

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KRI SV+      L   T KR EPRV F  LVERG+++PG+ L +  G  SA V ADG
Sbjct: 253 AEKRIKSVRKFDKEALQTTTSKRAEPRVPFGQLVERGMLRPGEELYSLNGRYSAKVRADG 312

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           TL+     GSIH+VGA    + +CNGW +W ++K G+   I+ LR  +R E+ N
Sbjct: 313 TLVGNEVKGSIHQVGAAYEKAPSCNGWTYWCYKKDGKRVPIDILRQQIRAEMAN 366


>gi|83945340|ref|ZP_00957688.1| modification methylase [Oceanicaulis alexandrii HTCC2633]
 gi|83851174|gb|EAP89031.1| modification methylase [Oceanicaulis alexandrii HTCC2633]
          Length = 364

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 210/353 (59%), Positives = 265/353 (75%), Gaps = 1/353 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I++G+   V++ LP +SVDLIFADPPYNLQL G L+RPD+S VDAV + WD+   F+A
Sbjct: 12  DVILEGDCAEVMKTLPDESVDLIFADPPYNLQLGGDLHRPDNSKVDAVDNDWDQIGDFDA 71

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD F+ AWL   RRVLKPNG LW IGSYHNIFR+G  LQ++ FWILND++WRKSNPMPNF
Sbjct: 72  YDLFSCAWLEEARRVLKPNGALWTIGSYHNIFRVGAFLQDMGFWILNDVIWRKSNPMPNF 131

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWAS +  AK  TFNY A+KA N+ VQMRSDW +PIC+G ERL+NKDG
Sbjct: 132 KGTRFTNAHETLIWASKTKDAKP-TFNYAAMKALNDGVQMRSDWTLPICAGGERLKNKDG 190

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPE+LL R+L++++ PGD++LDPFFG+GT+GAVAKKL R +IGIE    Y D+
Sbjct: 191 KKAHPTQKPESLLHRVLLATSNPGDVVLDPFFGTGTTGAVAKKLGRHYIGIEADPGYADV 250

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KRIA++ P     L V   KR  PR+ F  LVE GL++PG  L  AQG  +A V ADG
Sbjct: 251 ARKRIAAINPTSEDLLQVTQSKRALPRIPFGSLVEAGLLKPGDTLYCAQGRRTAQVRADG 310

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           T+I+G + GSIH++GA V G+ +CNGW FW+  + G L  I+ LR  +R E+ 
Sbjct: 311 TVIAGGQAGSIHQMGAHVQGAPSCNGWTFWHVRQGGALAPIDVLRARIRAEMQ 363


>gi|259417500|ref|ZP_05741419.1| modification methylase CcrMI [Silicibacter sp. TrichCH4B]
 gi|259346406|gb|EEW58220.1| modification methylase CcrMI [Silicibacter sp. TrichCH4B]
          Length = 385

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 213/353 (60%), Positives = 265/353 (75%), Gaps = 1/353 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I+ G+ I  +  LP+ S+D+IFADPPYNLQL GQL+RPD+S VDAV D WD+FSSF  
Sbjct: 33  NTILDGDCIERMASLPSNSIDMIFADPPYNLQLKGQLHRPDNSRVDAVDDEWDQFSSFGV 92

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTRAWL   RR+LKPNG LWVIGSYHNIFR+G+ LQ+  FWILND+VWRKSNPMPNF
Sbjct: 93  YDQFTRAWLKEARRILKPNGALWVIGSYHNIFRVGSALQDEGFWILNDVVWRKSNPMPNF 152

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+R+ NAHET+IWAS S  AK YTFNY+ALKA NE +QMRSDW++PIC+G ERL++ +G
Sbjct: 153 RGKRYTNAHETMIWASKSEGAK-YTFNYEALKALNEGIQMRSDWVMPICTGHERLKDANG 211

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPEALL RILV ST PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  +
Sbjct: 212 DKAHPTQKPEALLHRILVGSTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREESYRKV 271

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A +RI +V+      L V   KR EPRV F  LVERG+++PG+ L +      A V ADG
Sbjct: 272 AEERIKNVRKFDREALQVSASKRAEPRVPFGQLVERGMLRPGEELYSMNRRHKAKVRADG 331

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           TLI     GSIH+VGA +  + +CNGW +W F+K G+   I+ LR  +R E+ 
Sbjct: 332 TLIGDNIKGSIHQVGAHLENAPSCNGWTYWCFKKDGKTVPIDVLRQQIRAEMQ 384


>gi|304393522|ref|ZP_07375450.1| modification methylase BabI [Ahrensia sp. R2A130]
 gi|303294529|gb|EFL88901.1| modification methylase BabI [Ahrensia sp. R2A130]
          Length = 416

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 225/355 (63%), Positives = 281/355 (79%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           +  D II+G+ ++ + +LPA SVD+IFADPPYNLQL G+L RPD S VDA  D WD+F +
Sbjct: 58  DHLDSIIQGDCVAAMSRLPANSVDVIFADPPYNLQLGGELSRPDQSTVDACDDHWDQFDT 117

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           F AYDAF+RAWL A RRVLKPNGT+WVIGSYHNIFR+GTMLQ++ FWILNDIVWRK+NPM
Sbjct: 118 FAAYDAFSRAWLTAARRVLKPNGTIWVIGSYHNIFRVGTMLQDMQFWILNDIVWRKTNPM 177

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PNFRGRRF NAHET+IWASP PK KGYTFNYDALK AN+DVQMRSDW+ PIC+G ERL+ 
Sbjct: 178 PNFRGRRFTNAHETMIWASPDPKGKGYTFNYDALKMANDDVQMRSDWVFPICTGGERLKG 237

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           +DG+K+HPTQKPEALL R+L+SSTKPGD++LDPFFG+GT+GAVAK+L R FIGIE + DY
Sbjct: 238 EDGKKVHPTQKPEALLHRVLMSSTKPGDVVLDPFFGTGTTGAVAKRLGRHFIGIERETDY 297

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
           I+ A  RI +++P    +LTV TGKR  PRV F  ++E GL+  G +LT+++    A + 
Sbjct: 298 IEAARARIDAIEPGQAAQLTVTTGKRALPRVPFGAIIENGLLSAGDVLTDSKRRWKAMIR 357

Query: 318 ADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           ADG+LI   E  SIH+ GA+V G + CNGW FW+ E+ G+L  I+ LR + R  +
Sbjct: 358 ADGSLIESGEAASIHKTGARVQGLDACNGWTFWHVEREGKLVCIDDLRAIYRDAM 412


>gi|146276124|ref|YP_001166283.1| DNA methylase N-4/N-6 domain-containing protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145554365|gb|ABP68978.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 372

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 208/353 (58%), Positives = 266/353 (75%), Gaps = 1/353 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I+ G+ I V+  LP  SVDLIFADPPYNLQL G L+RPD+S VDAV D WD+FSSF +
Sbjct: 16  NQILAGDCIEVMRSLPECSVDLIFADPPYNLQLRGDLHRPDNSRVDAVDDHWDQFSSFAS 75

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL A RR+LKPNG +WVIGSYHNIFR+G  LQ+  FWILND+VWRKSNPMPNF
Sbjct: 76  YDQFTREWLAAARRLLKPNGAIWVIGSYHNIFRVGAALQDQGFWILNDVVWRKSNPMPNF 135

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G+R  NAHETLIWAS    +K YTFNY+ALKA NE +QMRSDW+IPIC+G ERL+++ G
Sbjct: 136 KGKRLTNAHETLIWASKQEASK-YTFNYEALKALNEGIQMRSDWVIPICTGHERLKDEHG 194

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPEALL R++V++T PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  +
Sbjct: 195 DKAHPTQKPEALLHRVMVATTNPGDVVLDPFFGTGTTGAVAKMLGRDFIGIEREEGYRKV 254

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A +R++ V+      L V   KR EPRV F  LVERG+++PG+ L +      A V ADG
Sbjct: 255 AAERLSRVRRFDASALEVSGSKRAEPRVPFGQLVERGMLRPGEELYSMNNRHKAKVRADG 314

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           TLI     GSIH+VGA + G+ +CNGW +W +++ G++  I+ LR  +R E+ 
Sbjct: 315 TLIGNDVKGSIHQVGAALEGAPSCNGWTYWCYKREGKMIPIDILRQQIRAEME 367


>gi|121602378|ref|YP_988732.1| modification methylase CcrMI [Bartonella bacilliformis KC583]
 gi|120614555|gb|ABM45156.1| modification methylase CcrMI [Bartonella bacilliformis KC583]
          Length = 378

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 239/361 (66%), Positives = 298/361 (82%)

Query: 12  NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
           N  S   W ++I KG+ ++VLEKLP  SVD+IFADPPYNLQL G LYRPDHSLVDAV D+
Sbjct: 12  NSPSQIPWCNQIFKGDCVAVLEKLPKHSVDMIFADPPYNLQLEGVLYRPDHSLVDAVDDA 71

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           WD+F SF AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR+GT LQ+L FW+LNDI+W
Sbjct: 72  WDQFESFAAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRVGTTLQDLGFWVLNDIIW 131

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
           RK+NPMPNFRGRRFQNAHETLIWA    K K YTFNYD+LKAAN+DVQMRSDWL P+C+G
Sbjct: 132 RKNNPMPNFRGRRFQNAHETLIWAVRDQKDKKYTFNYDSLKAANDDVQMRSDWLFPLCTG 191

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           +ERL+++ G+KLHPTQKP+ALL+RI+++++K GD+ILDPFFGSGT+GAVAK L R+F+GI
Sbjct: 192 AERLKDEAGDKLHPTQKPQALLARIIMAASKSGDVILDPFFGSGTTGAVAKLLGRNFVGI 251

Query: 252 EMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
           E +Q YID A +RIA+V+PL   EL ++ GK+ EPRVAF  L+E GL+ PG +L + +  
Sbjct: 252 EREQRYIDAAHERIAAVKPLAKSELEIIKGKKAEPRVAFINLLEAGLLCPGSVLYDKKKR 311

Query: 312 ISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           +SA V ADGT++   E GSIH +G KV  S++CNGW FWY+E  G+L SI+ LR+++R +
Sbjct: 312 VSAIVRADGTIMCDNEAGSIHAIGRKVQVSQSCNGWTFWYYEDNGKLKSIDDLRMVIRSQ 371

Query: 372 L 372
           +
Sbjct: 372 I 372


>gi|254476528|ref|ZP_05089914.1| modification methylase SmeIP [Ruegeria sp. R11]
 gi|214030771|gb|EEB71606.1| modification methylase SmeIP [Ruegeria sp. R11]
          Length = 374

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 214/354 (60%), Positives = 265/354 (74%), Gaps = 1/354 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I+ G+ I V+  LP+ SVD+IFADPPYNLQL GQL+RPD+S VDAV D WD+FSSF  
Sbjct: 22  NAILDGDCIEVMAGLPSNSVDMIFADPPYNLQLKGQLHRPDNSKVDAVDDHWDQFSSFGV 81

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL   RR+LKPNG++WVIGSYHNIFR+GT +Q+  FWILND++WRKSNPMPNF
Sbjct: 82  YDKFTRDWLKEARRILKPNGSIWVIGSYHNIFRVGTAMQDEGFWILNDVIWRKSNPMPNF 141

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+RF NAHET+IWAS S  AK YTFNY+ALKA NE +QMRSDW++PIC+G ERL++  G
Sbjct: 142 RGKRFTNAHETMIWASKSEGAK-YTFNYEALKALNEGLQMRSDWVLPICTGHERLKDDAG 200

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K HPTQKPE+LL RIL+ ST PGD++LDPFFG+GT+GAVAK L R FIGIE +  Y ++
Sbjct: 201 NKAHPTQKPESLLHRILLGSTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREATYREV 260

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KRI SV+      L V   KR EPRV F  LVERG+++PG+ L +      A V ADG
Sbjct: 261 AEKRIKSVRKFDREALQVSASKRAEPRVPFGQLVERGMLRPGEELYSMNRRHKAKVRADG 320

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           TLI     GSIH+VGA +  + +CNGW +W F++ G+   I+ LR  +R EL N
Sbjct: 321 TLIGDNIKGSIHQVGAHLENAPSCNGWTYWCFKRDGKTVPIDVLRQQIRAELQN 374


>gi|77462007|ref|YP_351511.1| site-specific DNA-methyltransferase [Rhodobacter sphaeroides 2.4.1]
 gi|126460897|ref|YP_001042011.1| DNA methylase N-4/N-6 domain-containing protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|221640958|ref|YP_002527220.1| DNA methylase N-4/N-6 domain-containing protein [Rhodobacter
           sphaeroides KD131]
 gi|332559934|ref|ZP_08414256.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sphaeroides WS8N]
 gi|77386425|gb|ABA77610.1| Site-specific DNA-methyltransferase [Rhodobacter sphaeroides 2.4.1]
 gi|126102561|gb|ABN75239.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|221161739|gb|ACM02719.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sphaeroides
           KD131]
 gi|332277646|gb|EGJ22961.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sphaeroides WS8N]
          Length = 372

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 209/354 (59%), Positives = 265/354 (74%), Gaps = 1/354 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I+ G+ I  +  LP  SVDLIFADPPYNLQL G L+RPD+S VDAV D WD+FSSF  
Sbjct: 16  NQILAGDCIETMRSLPECSVDLIFADPPYNLQLRGDLHRPDNSRVDAVDDHWDQFSSFSV 75

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL A RR+LKPNG +WVIGSYHNIFR+G  LQ+  FWILND+VWRKSNPMPNF
Sbjct: 76  YDQFTREWLAAARRLLKPNGAIWVIGSYHNIFRVGAALQDQGFWILNDVVWRKSNPMPNF 135

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G+R  NAHETLIWAS    +K YTFNY+ALKA NE VQMRSDW+IPIC+G ERL+++ G
Sbjct: 136 KGKRLTNAHETLIWASKQEASK-YTFNYEALKALNEGVQMRSDWVIPICTGHERLKDEQG 194

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPEALL R++V++T PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  I
Sbjct: 195 DKAHPTQKPEALLHRVMVATTNPGDVVLDPFFGTGTTGAVAKMLGRDFIGIEREESYRRI 254

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A +R++ V+      L V   KR EPRV F  LVERG+++PG+ L +      A V ADG
Sbjct: 255 AAERLSRVRRYDASALEVSGSKRAEPRVPFGQLVERGMLRPGEELYSMNNRHKAKVRADG 314

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           TLI     GSIH+VGA + G+ +CNGW +W +++ G++  I+ LR  +R E+ +
Sbjct: 315 TLIGNDVKGSIHQVGAALEGAPSCNGWTYWCYKREGKMIPIDILRQQIRAEMED 368


>gi|298294362|ref|YP_003696301.1| DNA methylase N-4/N-6 domain protein [Starkeya novella DSM 506]
 gi|296930873|gb|ADH91682.1| DNA methylase N-4/N-6 domain protein [Starkeya novella DSM 506]
          Length = 395

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 229/358 (63%), Positives = 281/358 (78%), Gaps = 5/358 (1%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I++G+ ++ L KLPA+SVD++FADPPYNLQL G+L RPD S VDAV D+WDKF SF+A
Sbjct: 34  DTILRGDCVAELSKLPARSVDMVFADPPYNLQLQGELKRPDDSRVDAVDDAWDKFESFQA 93

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YDAFTRAWLLA RRVLKP GTLWVIGSYHNIFR+G +LQ+L+FWILNDIVWRK+NPMPNF
Sbjct: 94  YDAFTRAWLLAVRRVLKPTGTLWVIGSYHNIFRVGALLQDLDFWILNDIVWRKTNPMPNF 153

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RGRRF NAHETLIWA+  P AKGYTFNY+ALKAANEDVQMRSDWL PICSG ERL+++DG
Sbjct: 154 RGRRFTNAHETLIWAAREPGAKGYTFNYEALKAANEDVQMRSDWLFPICSGGERLKDEDG 213

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            KLHPTQKPEALL+R+++S++KPGD++LDPF GSGT+ AVA++L R F+GIE    Y D 
Sbjct: 214 RKLHPTQKPEALLARVILSASKPGDVVLDPFLGSGTTAAVARRLGRHFVGIERDPTYADA 273

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  RI +V+PL ++ L +    R  PRVAFN L+ERGL+ PG +LT+A+    A V ADG
Sbjct: 274 AQARIDAVEPLPDLALALAPTAREAPRVAFNSLIERGLLAPGTLLTDAKARTRALVRADG 333

Query: 321 TLISG-----TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           TL         ++GSIHR GA   G + CNGW +W+ E    L  I+TLR ++R E+ 
Sbjct: 334 TLSLETAPGLGQIGSIHRAGALAQGLDACNGWTYWHVETREGLKPIDTLRAVMRSEMA 391


>gi|319405302|emb|CBI78916.1| adenine DNA methyltransferase protein CcrM [Bartonella sp. AR 15-3]
          Length = 378

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 240/360 (66%), Positives = 295/360 (81%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
            +S  +W++KI KG+ ++VLEKLP  SVD+IFADPPYNLQL G LYRPD+S VDAV D+W
Sbjct: 13  TSSQTQWRNKIFKGDCVAVLEKLPKHSVDVIFADPPYNLQLEGVLYRPDYSRVDAVDDAW 72

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           D+F SF AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDI+WR
Sbjct: 73  DQFESFSAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTALQDLGFWMLNDIIWR 132

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K+NPMPNFRGRRFQNAHETLIWA    K K YTFNYDALKAANED QMRSDWL P+C+G+
Sbjct: 133 KNNPMPNFRGRRFQNAHETLIWAVRDQKDKKYTFNYDALKAANEDRQMRSDWLFPLCTGA 192

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           ERL++K G KLHPTQKP++LL+RI+++S+KPGD+ILDPFFGSGT+GAVAK L R F+GIE
Sbjct: 193 ERLKDKVGRKLHPTQKPQSLLARIIMASSKPGDVILDPFFGSGTTGAVAKLLGRDFVGIE 252

Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNI 312
            +Q YID A +RIA V+PL   EL +L  KRTEPRVAF+ L++  L+ PG IL + +  I
Sbjct: 253 REQHYIDAACERIAVVKPLAKSELEILKTKRTEPRVAFSSLLDARLLYPGSILYDKKKEI 312

Query: 313 SATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           SA V ADGT++   E GSIH +G K   S++CNGW FWY+E+ G L SI+ LR+++R ++
Sbjct: 313 SAIVRADGTIMYDGEAGSIHMIGRKAQASQSCNGWTFWYYEENGLLKSIDDLRMMIRSQM 372


>gi|126734212|ref|ZP_01749959.1| modification methylase [Roseobacter sp. CCS2]
 gi|126717078|gb|EBA13942.1| modification methylase [Roseobacter sp. CCS2]
          Length = 369

 Score =  475 bits (1222), Expect = e-132,   Method: Composition-based stats.
 Identities = 215/353 (60%), Positives = 269/353 (76%), Gaps = 1/353 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I+ G+ I V+  LPA SVDLIFADPPYNLQL G L+RPD+S VDAV D+WD+F SF+ 
Sbjct: 16  NTIVDGDCIDVMNSLPAGSVDLIFADPPYNLQLKGDLHRPDNSKVDAVDDAWDQFDSFKV 75

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL A RR+LKPNG +WVIGSYHN+FR+G  LQN  FWILND+VWRKSNPMPNF
Sbjct: 76  YDKFTREWLAAARRLLKPNGAIWVIGSYHNVFRMGAELQNQGFWILNDVVWRKSNPMPNF 135

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+R  NAHETLIWAS    +K YTFNY+ALKA NE VQMRSDW++PIC+G ERL+N+ G
Sbjct: 136 RGKRLTNAHETLIWASKEEASK-YTFNYEALKALNEGVQMRSDWVLPICTGHERLKNEAG 194

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKP++LL R+LV++T PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  +
Sbjct: 195 DKAHPTQKPQSLLHRVLVATTNPGDVVLDPFFGTGTTGAVAKMLGRDFIGIEREESYRKV 254

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KRI + +   N  L V T KR EPRVAF +LVERG+++PG+ L +  G   A V ADG
Sbjct: 255 AEKRIKNTRKFDNEALQVSTSKRAEPRVAFGVLVERGMLRPGEELWSMNGRHKAKVRADG 314

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           TLI     GSIH+VGA + G+ +CNGW +W F++ G+   I+ LR  +R E+ 
Sbjct: 315 TLIGDDIKGSIHQVGAHLEGAPSCNGWTYWQFKRDGQKVPIDLLRQQIRSEMA 367


>gi|13476248|ref|NP_107818.1| adenine DNA methyltransferase [Mesorhizobium loti MAFF303099]
 gi|14027009|dbj|BAB53963.1| adenine DNA methyltransferase [Mesorhizobium loti MAFF303099]
          Length = 377

 Score =  475 bits (1222), Expect = e-132,   Method: Composition-based stats.
 Identities = 235/356 (66%), Positives = 292/356 (82%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           EW D I+KG+ ++ L++LP KSVD+IFADPPYNLQL+G L+RPD S VDAV D WD+F +
Sbjct: 18  EWLDTILKGDCVAALDRLPEKSVDVIFADPPYNLQLDGDLHRPDQSKVDAVDDHWDQFEN 77

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           FEAYDAFTRAWLLA RRVLKPNGT+WVIGSYHNIFR+G  +Q+L FWILND+VWRK+NPM
Sbjct: 78  FEAYDAFTRAWLLAARRVLKPNGTIWVIGSYHNIFRVGAKMQDLGFWILNDVVWRKTNPM 137

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PNFRGRRFQNAHET+IWAS   K KGYTFNY+ALKA+N+D+QMRSDWL PIC+G ERL+N
Sbjct: 138 PNFRGRRFQNAHETMIWASRDQKGKGYTFNYEALKASNDDIQMRSDWLFPICTGGERLKN 197

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
            +G+KLHPTQKPEALL+RI+++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +Q Y
Sbjct: 198 DNGDKLHPTQKPEALLARIMMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQAY 257

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
           ID A +RI +V+PL + +LTVLTGKR EPRVAF  L++ GL+ PG  L +A+   +  V 
Sbjct: 258 IDAANERIDAVRPLEDADLTVLTGKRAEPRVAFVSLIDTGLMTPGVTLYDAKKRWAVKVR 317

Query: 318 ADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           ADGT+  G   GSIH++GA+V G + CNGW FW++E+ G L  I+ LR + R  + 
Sbjct: 318 ADGTVAIGDSAGSIHKIGAEVQGLDACNGWTFWHYERSGGLTPIDELRRIARLGME 373


>gi|319403861|emb|CBI77447.1| adenine DNA methyltransferase protein CcrM [Bartonella rochalimae
           ATCC BAA-1498]
          Length = 378

 Score =  474 bits (1221), Expect = e-132,   Method: Composition-based stats.
 Identities = 235/360 (65%), Positives = 296/360 (82%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
            +S  +W++KI KG+ ++VLEKLP  SVD+IFADPPYNLQL   LYRPD+S VDAV D+W
Sbjct: 13  TSSQTQWRNKIFKGDCVAVLEKLPKHSVDVIFADPPYNLQLESVLYRPDYSRVDAVDDAW 72

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           D+F SF AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDI+WR
Sbjct: 73  DQFESFAAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTALQDLGFWMLNDIIWR 132

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K+NPMPNFRGRRFQNAHETLIWA    K K Y FNYDALKAANED QMRSDWL P+C+G+
Sbjct: 133 KNNPMPNFRGRRFQNAHETLIWAVRDQKDKKYIFNYDALKAANEDRQMRSDWLFPLCTGA 192

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           ERL++K G KLHPTQKP++LL+RI+++S+KPGD+ILDPFFGSGT+GAVAK L R F+GIE
Sbjct: 193 ERLKDKIGRKLHPTQKPQSLLARIIMASSKPGDVILDPFFGSGTTGAVAKLLGRDFVGIE 252

Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNI 312
            +Q YID A++RIA+V+PL   EL +L  K+ EPR+AF+ L++ GL+ PG IL + +  +
Sbjct: 253 REQHYIDAASERIAAVKPLAKSELEILKTKKAEPRIAFSSLLDAGLLYPGSILYDKKKEV 312

Query: 313 SATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           SA V ADGT++   E GSIH +G K   S++CNGW FWY+E+ G L SI++LR+++R ++
Sbjct: 313 SALVRADGTIMYDGEAGSIHMIGRKAQASQSCNGWTFWYYEENGLLKSIDSLRMMIRSQM 372


>gi|126738667|ref|ZP_01754372.1| modification methylase [Roseobacter sp. SK209-2-6]
 gi|126720466|gb|EBA17172.1| modification methylase [Roseobacter sp. SK209-2-6]
          Length = 368

 Score =  474 bits (1221), Expect = e-132,   Method: Composition-based stats.
 Identities = 212/354 (59%), Positives = 263/354 (74%), Gaps = 1/354 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I+ G+ I V+  LP  SVDLIFADPPYNLQL  QL+RPD+S VDAV D WD+FSSF A
Sbjct: 16  NTILDGDCIEVMSGLPDNSVDLIFADPPYNLQLKNQLHRPDNSKVDAVDDHWDQFSSFAA 75

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FT  WL   RR+LKPNG +WVIGSYHNIFR+GT +Q+  FWILND+VWRKSNPMPNF
Sbjct: 76  YDDFTSRWLHQARRILKPNGAIWVIGSYHNIFRVGTAMQDEGFWILNDVVWRKSNPMPNF 135

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+R+ NAHET+IWAS S   K YTFNY+ALKA NE +QMRSDW++PIC+G ERL++++G
Sbjct: 136 RGKRYTNAHETMIWASKSEGGK-YTFNYEALKALNEGIQMRSDWVLPICTGHERLKDENG 194

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPE+LL RILV ST PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  +
Sbjct: 195 DKAHPTQKPESLLHRILVGSTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEQEESYRKV 254

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  RI +V+      L V T KR  PRV F  LVERG+++PG+ L +      A V ADG
Sbjct: 255 AAARIKAVRKFDREALQVSTSKRAAPRVPFGQLVERGMLRPGEELYSMNRRHKAKVRADG 314

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           TLI     GSIH+VGA +  + +CNGW +W F+K G+   I+ LR  +R E+ N
Sbjct: 315 TLIGDNCKGSIHQVGAHLENAPSCNGWTYWCFKKDGKTVPIDVLRQQIRAEMQN 368


>gi|149912479|ref|ZP_01901013.1| Site-specific DNA-methyltransferase [Roseobacter sp. AzwK-3b]
 gi|149812885|gb|EDM72711.1| Site-specific DNA-methyltransferase [Roseobacter sp. AzwK-3b]
          Length = 371

 Score =  474 bits (1221), Expect = e-132,   Method: Composition-based stats.
 Identities = 210/354 (59%), Positives = 265/354 (74%), Gaps = 1/354 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I+ G+ I V+  LP  S+DLIFADPPYNLQL G L+RPD+S VDAV D+WD+F+SFE 
Sbjct: 16  NTILDGDCIEVMNSLPEGSIDLIFADPPYNLQLRGDLHRPDNSAVDAVDDAWDQFASFEV 75

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FT  WL A RR+LKPNG +WVIGSYHNIFR+G  LQN  FWILND+VWRKSNPMPNF
Sbjct: 76  YDCFTNDWLNAARRLLKPNGAIWVIGSYHNIFRVGAALQNAGFWILNDVVWRKSNPMPNF 135

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+R  NAHET+IWAS    AK YTFNY+ALK+ N+ VQMRSDW++PIC+G ERL+++ G
Sbjct: 136 RGKRLTNAHETMIWASKQEGAK-YTFNYEALKSLNDGVQMRSDWVLPICTGHERLKDEHG 194

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPE+LL R+LV ST PGD++LDPFFG+GT+GAVAK L R +IGIE +  Y  +
Sbjct: 195 DKAHPTQKPESLLHRVLVGSTNPGDVVLDPFFGTGTTGAVAKMLGRDYIGIEREAAYRKV 254

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KR+A ++      L V T KR EPRV F  LVERG+++PG+ L +  G   A V ADG
Sbjct: 255 AEKRLAGIRKFDRAALEVSTSKRAEPRVPFGQLVERGMLRPGEELLSMNGRHKAKVRADG 314

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           TLI     GSIH+VGA + G+ +CNGW +W F++ G+   I+ LR  +R E+ +
Sbjct: 315 TLIGDDVKGSIHQVGAALEGAPSCNGWTYWCFKRDGKTVPIDILRQQIRAEMAD 368


>gi|254461867|ref|ZP_05075283.1| modification methylase SmeIP [Rhodobacterales bacterium HTCC2083]
 gi|206678456|gb|EDZ42943.1| modification methylase SmeIP [Rhodobacteraceae bacterium HTCC2083]
          Length = 371

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 212/354 (59%), Positives = 266/354 (75%), Gaps = 1/354 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I  G+ I V+  LP  S+DLIFADPPYNLQL G L+RPD+S VDAV D WD+FSSF A
Sbjct: 16  NTIQSGDCIEVMNSLPENSIDLIFADPPYNLQLKGDLHRPDNSRVDAVDDHWDQFSSFAA 75

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FT+ WL A RR+LKPNG +WVIGSYHNIFR+G+ LQN  +WILND+VWRKSNPMPNF
Sbjct: 76  YDKFTQDWLKAARRLLKPNGAIWVIGSYHNIFRVGSALQNEGYWILNDVVWRKSNPMPNF 135

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+RF NAHET+IWAS S  AK YTFNY+ALK+ NE +QMRSDW++PIC+G ERL+++ G
Sbjct: 136 RGKRFTNAHETMIWASKSEGAK-YTFNYEALKSLNEGIQMRSDWVLPICTGHERLKDEAG 194

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           EK HPTQKPE+LL R+L+ ST PGD++LDPFFG+GT+GAVAK L R +IGIE +  Y  +
Sbjct: 195 EKAHPTQKPESLLHRVLIGSTNPGDVVLDPFFGTGTTGAVAKMLGREYIGIEREAAYRKV 254

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KRI +V+      L V T KR EPRV F  LVERG+++PG+ L +      A V ADG
Sbjct: 255 AEKRIKAVRKFDREALRVSTSKRAEPRVPFGQLVERGMLRPGENLYSMNNRHKAKVRADG 314

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           TLI     GSIH+VGA + G+ +CNGW +W F++ G+   I+ LR  +R E+ +
Sbjct: 315 TLIGDDVKGSIHQVGAALEGAPSCNGWTYWSFKRDGKTVPIDVLRQQIRSEMAD 368


>gi|328544989|ref|YP_004305098.1| adenine dna methyltransferase protein [polymorphum gilvum
           SL003B-26A1]
 gi|326414731|gb|ADZ71794.1| Adenine dna methyltransferase protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 379

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 221/354 (62%), Positives = 281/354 (79%), Gaps = 1/354 (0%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W + I+KG+ ++ LEKLP++SVDL+FADPPYNLQL G L+RPD S VDA  D+WD+F SF
Sbjct: 25  WLNTILKGDCVAALEKLPSRSVDLVFADPPYNLQLGGDLHRPDQSRVDACDDAWDQFDSF 84

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           EAYDAFTRAWLLA RRVLK +G++WVIGSYHNIFR+G +LQ+L FWILND+VW KSNPMP
Sbjct: 85  EAYDAFTRAWLLAVRRVLKKDGSIWVIGSYHNIFRVGAILQDLGFWILNDVVWVKSNPMP 144

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRG+R  NAHET+IWA+PS  A+ YTFNYDALKA N+D+QMRSDW +P+C+G+ERL++ 
Sbjct: 145 NFRGKRLTNAHETMIWAAPSKDAR-YTFNYDALKAFNDDLQMRSDWHLPLCTGAERLKDG 203

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            G+K+HPTQKPEALL R+L +S+KP DI+LDPFFG+GT+GAVA+KL R+F+G+E +Q YI
Sbjct: 204 GGQKVHPTQKPEALLYRVLTASSKPDDIVLDPFFGTGTTGAVARKLGRNFVGVEREQAYI 263

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D AT RIA+V+P     L +  GKR EPR+ F  L+E GL+QPG  LT ++G   A V A
Sbjct: 264 DAATARIAAVEPASGACLDMQKGKRAEPRIPFGSLLEAGLLQPGATLTCSKGRHKAIVRA 323

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           DG+L S    GSIH+VGA V G++ CNGW FW+ E+ G    I+ LR ++R  L
Sbjct: 324 DGSLASADHTGSIHKVGALVQGADACNGWTFWHIEEDGTRAPIDALRQIIRSRL 377


>gi|159042580|ref|YP_001531374.1| adenine-specific methyltransferase [Dinoroseobacter shibae DFL 12]
 gi|157910340|gb|ABV91773.1| adenine-specific methyltransferase [Dinoroseobacter shibae DFL 12]
          Length = 368

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 208/352 (59%), Positives = 272/352 (77%), Gaps = 2/352 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I+ G+ I V+  LP  SVDLIFADPPYNLQL G L+RPD+S VDAV D+WD+F+SF++
Sbjct: 16  NEILAGDCIEVMNSLPEASVDLIFADPPYNLQLKGDLHRPDNSKVDAVDDAWDRFASFDS 75

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD F+  WL A RR+LKPNG +WVIGSYHNIFR+G  LQN  +WILND+VWRKSNPMPNF
Sbjct: 76  YDRFSADWLAAARRLLKPNGAIWVIGSYHNIFRVGAALQNTGYWILNDVVWRKSNPMPNF 135

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+R  NAHETLIWAS S  AK YTFNY+ALK  NE +QMRSDW++PIC+G ERL+++ G
Sbjct: 136 RGKRLTNAHETLIWASKSEGAK-YTFNYEALKQLNEGIQMRSDWVLPICTGHERLKDEAG 194

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPE+LL R++V++T PGD++LDPFFG+GT+GAVAKKL R FIGIE ++ Y  +
Sbjct: 195 DKAHPTQKPESLLHRVIVATTNPGDVVLDPFFGTGTTGAVAKKLGRDFIGIEREEAYRKV 254

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  R+A V+      L V   KR+EPRV F  LVERG+++PG++LT+  G + A V ADG
Sbjct: 255 AEARLADVRKYDRESLAVTQSKRSEPRVPFGQLVERGMLRPGEVLTSPGGKV-AKVRADG 313

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           TL++    GSIH+VGA +  + +CNGW +W+F++ G+   I+ LR  +R E+
Sbjct: 314 TLVADQVAGSIHQVGAALEHAPSCNGWTYWHFKRDGKSVPIDLLRQQIRAEM 365


>gi|163739876|ref|ZP_02147283.1| DNA methylase N-4/N-6 [Phaeobacter gallaeciensis BS107]
 gi|163743379|ref|ZP_02150759.1| modification methylase [Phaeobacter gallaeciensis 2.10]
 gi|161383373|gb|EDQ07762.1| modification methylase [Phaeobacter gallaeciensis 2.10]
 gi|161386910|gb|EDQ11272.1| DNA methylase N-4/N-6 [Phaeobacter gallaeciensis BS107]
          Length = 367

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 216/354 (61%), Positives = 264/354 (74%), Gaps = 1/354 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I+ G+ I V+  LP+ SVDLIFADPPYNLQL GQL+RPD+S VDAV D WD+FSSF  
Sbjct: 15  NAILDGDCIEVMSGLPSNSVDLIFADPPYNLQLKGQLHRPDNSKVDAVDDHWDQFSSFGV 74

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL   RR+LKPNG++WVIGSYHNIFR+GT +Q+  FWILND++WRKSNPMPNF
Sbjct: 75  YDKFTRDWLKQARRILKPNGSIWVIGSYHNIFRVGTAVQDEGFWILNDVIWRKSNPMPNF 134

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+R+ NAHET+IWAS S  AK YTFNY+ALKA NE +QMRSDW++PIC+G ERL++  G
Sbjct: 135 RGKRYTNAHETMIWASKSEGAK-YTFNYEALKALNEGLQMRSDWVMPICTGHERLKDDAG 193

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K HPTQKPEALL RILV ST PGD++LDPFFG+GT+GAVAK L R FIGIE +  Y ++
Sbjct: 194 NKAHPTQKPEALLHRILVGSTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREAAYREV 253

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KRI SV+      L V   KR EPRV F  LVERG+++PG  L +      A V ADG
Sbjct: 254 AEKRIKSVRKFDREALQVSASKRAEPRVPFGQLVERGMLRPGDELYSMNRRHKAKVRADG 313

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           TLI     GSIH+VGA +  + +CNGW +W F++ G+   I+ LR  +R EL N
Sbjct: 314 TLIGDNIKGSIHQVGAHLENAPSCNGWTYWCFKRDGKTVPIDVLRQQIRAELQN 367


>gi|254485663|ref|ZP_05098868.1| modification methylase SmeIP [Roseobacter sp. GAI101]
 gi|214042532|gb|EEB83170.1| modification methylase SmeIP [Roseobacter sp. GAI101]
          Length = 366

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 212/354 (59%), Positives = 262/354 (74%), Gaps = 1/354 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I+ G+ I  +  +P  SVDLIFADPPYNLQL G L+RPD+S VDAV D+WD+F+SF  
Sbjct: 14  NTILAGDCIEAMNAMPEGSVDLIFADPPYNLQLKGDLHRPDNSKVDAVDDAWDQFASFAV 73

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL A RR+LKPNG +WVIGSYHNIFR+G  LQ+  FWILND+VWRKSNPMPNF
Sbjct: 74  YDKFTREWLKAARRLLKPNGAIWVIGSYHNIFRVGAALQDQGFWILNDVVWRKSNPMPNF 133

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+RF NAHET+IWA     +K YTFNY+ALKA NE +QMRSDW++PIC+G ERL++  G
Sbjct: 134 RGKRFTNAHETMIWAGKDENSK-YTFNYEALKALNEGIQMRSDWVLPICTGHERLKDDAG 192

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPE+LL RILV ST PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  +
Sbjct: 193 DKAHPTQKPESLLHRILVGSTNPGDVVLDPFFGTGTTGAVAKMLGRDFIGIEREEAYRKV 252

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KRI SV+      L   T KR EPRV F  LVERG+++PG+ L +  G  SA V ADG
Sbjct: 253 AEKRIKSVRKFDKEALQTTTSKRAEPRVPFGQLVERGMLRPGEELYSLNGRYSAKVRADG 312

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           TLI     GSIH+VGA    + +CNGW +W ++K G+   I+ LR  +R E+ N
Sbjct: 313 TLIGNEVKGSIHQVGAAYEKAPSCNGWTYWCYKKDGKRVPIDILRQQIRAEMAN 366


>gi|163745411|ref|ZP_02152771.1| modification methylase [Oceanibulbus indolifex HEL-45]
 gi|161382229|gb|EDQ06638.1| modification methylase [Oceanibulbus indolifex HEL-45]
          Length = 366

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 216/354 (61%), Positives = 266/354 (75%), Gaps = 1/354 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I+ G+ I  +  LPA+SVDLIFADPPYNLQL G L+RPD+S VDAV D WD+F+SF+A
Sbjct: 14  NTIVAGDCIEAMNALPAESVDLIFADPPYNLQLRGDLHRPDNSKVDAVDDEWDQFASFKA 73

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTRAWL A RR+LKP+G +WVIGSYHNIFR+G  LQ+  FWILND+VWRKSNPMPNF
Sbjct: 74  YDDFTRAWLKAARRLLKPDGAIWVIGSYHNIFRVGAALQDQGFWILNDVVWRKSNPMPNF 133

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+RF NAHET+IWA  S  +K YTFNY+ALKA NE +QMRSDW++PIC+G ERL++  G
Sbjct: 134 RGKRFTNAHETMIWAGKSENSK-YTFNYEALKALNEGIQMRSDWVLPICTGHERLKDDAG 192

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPE+LL RILV ST PGD+ILDPFFG+GT+GAVAK L R FIGIE +  Y  +
Sbjct: 193 DKAHPTQKPESLLHRILVGSTNPGDVILDPFFGTGTTGAVAKMLGRDFIGIEREAAYRKV 252

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KRI+ V+   N  L   T KR EPRV F  LVERG+++PG+ L +  G   A V ADG
Sbjct: 253 AEKRISMVRKFDNEALQTTTSKRAEPRVPFGQLVERGMLRPGENLYSMNGRHKAKVRADG 312

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           TLI     GSIH+VGA    + +CNGW +W ++K G+   I+ LR  +R E+ N
Sbjct: 313 TLIGSDVKGSIHQVGAAYEKAPSCNGWTYWCYKKDGKNVPIDILRQQIRAEMAN 366


>gi|255262501|ref|ZP_05341843.1| modification methylase CcrMI [Thalassiobium sp. R2A62]
 gi|255104836|gb|EET47510.1| modification methylase CcrMI [Thalassiobium sp. R2A62]
          Length = 369

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 211/352 (59%), Positives = 267/352 (75%), Gaps = 1/352 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I+ G+ I  +  LPA SVDLIFADPPYNLQL G L+RPD+S VDAV + WD+FSSF+ 
Sbjct: 16  NTILDGDCIERMNSLPAGSVDLIFADPPYNLQLRGDLHRPDNSKVDAVDNDWDQFSSFDV 75

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FT+AWL A RR+LKPNG +W IGSYHN+FR+G  LQN  FWILND+VWRKSNPMPNF
Sbjct: 76  YDKFTKAWLKAARRLLKPNGAIWCIGSYHNVFRMGAELQNQGFWILNDVVWRKSNPMPNF 135

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+RF NAHETLIWAS S  AK YTFNY+ALKA NE +QMRSDW++PIC+G ERL++ +G
Sbjct: 136 RGKRFTNAHETLIWASKSEGAK-YTFNYEALKALNEGIQMRSDWVLPICTGHERLKDDNG 194

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPE+LL R+L+++T PGD++LDPFFG+GT+GAVAK L R FIGIE +  Y ++
Sbjct: 195 DKAHPTQKPESLLHRVLLATTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREVAYREV 254

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KRIA ++      L V   KR EPRV F  LVERG+++PG+ L +      A V ADG
Sbjct: 255 AEKRIAKIRKFDKEALQVSQSKRAEPRVPFGQLVERGMLRPGEELYSINKRHKAKVRADG 314

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           TLI     GSIH+VGA + G+ +CNGW +W+++K G+   I+ LR  +R E+
Sbjct: 315 TLIGDDVKGSIHQVGAHLEGAPSCNGWTYWHYKKEGKKVPIDLLRQQIRAEM 366


>gi|163733085|ref|ZP_02140529.1| modification methylase [Roseobacter litoralis Och 149]
 gi|161393620|gb|EDQ17945.1| modification methylase [Roseobacter litoralis Och 149]
          Length = 366

 Score =  471 bits (1212), Expect = e-131,   Method: Composition-based stats.
 Identities = 213/368 (57%), Positives = 274/368 (74%), Gaps = 2/368 (0%)

Query: 7   LAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           + + + +++     + II G+ I V+  LP  SVDLIFADPPYNLQL G L+RPD+S VD
Sbjct: 1   MMMTKTKSAAALPLNTIIDGDCIEVMNGLPEASVDLIFADPPYNLQLKGDLHRPDNSRVD 60

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
           AV D WD+F+SF+ YD FT+AWL A RR+LKP+G +WVIGSYHNIFR+G  LQN  +WIL
Sbjct: 61  AVDDEWDQFASFKVYDDFTKAWLKAARRILKPDGAIWVIGSYHNIFRVGAELQNQGYWIL 120

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           ND+VWRKSNPMPNFRG+RF NAHET+IWA     +K YTFNY+ALKA NE +QMRSDW++
Sbjct: 121 NDVVWRKSNPMPNFRGKRFTNAHETMIWAGRDESSK-YTFNYEALKALNEGIQMRSDWVL 179

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           PIC+G ERL++++G+K HPTQKPE+LL R+LV +T PGD+ILDPFFG+GT+GAVAK L R
Sbjct: 180 PICTGHERLKDENGDKAHPTQKPESLLHRVLVGATNPGDVILDPFFGTGTTGAVAKMLGR 239

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILT 306
            FIGIE +  Y  +A KRIA V+      L V   KR EPRV F  LVERG+++PG+ L 
Sbjct: 240 DFIGIEREAAYRKVAEKRIAKVRKFDREALQVSVSKRAEPRVPFGQLVERGMLRPGEALY 299

Query: 307 NAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRI 366
           + +G + A V ADGTLI     GSIH+VGA + G+ +CNGW +W F++ G+   I+ LR 
Sbjct: 300 SPRGQV-AKVRADGTLIGNDVKGSIHQVGAHLEGAPSCNGWTYWTFKQDGKKVPIDVLRQ 358

Query: 367 LVRKELYN 374
            +R E+ N
Sbjct: 359 QIRSEMTN 366


>gi|329888142|ref|ZP_08266740.1| modification methylase CcrMI [Brevundimonas diminuta ATCC 11568]
 gi|328846698|gb|EGF96260.1| modification methylase CcrMI [Brevundimonas diminuta ATCC 11568]
          Length = 356

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 209/354 (59%), Positives = 262/354 (74%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            D I++G+ I VL+ LP KSVD++FADPPYNLQL G L RPD+S VDAV D WDKF SF 
Sbjct: 3   TDVILRGDCIEVLKGLPDKSVDMVFADPPYNLQLGGDLLRPDNSKVDAVDDDWDKFDSFA 62

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYDAFTRAWL  CRRVLK  G+LWVIGSYHNIFR+G  +Q+L FW+LNDI+WRKSNPMPN
Sbjct: 63  AYDAFTRAWLGECRRVLKDEGSLWVIGSYHNIFRLGAAMQDLGFWVLNDIIWRKSNPMPN 122

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           F+G RF NAHETLIWA+ S + K YTFNYDALKA NED QMRSDW + +C+G ERL++++
Sbjct: 123 FKGTRFTNAHETLIWAAKSREQKRYTFNYDALKAFNEDTQMRSDWTLALCTGGERLKDEN 182

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKPEALL R+L+S+++ GD++LDPFFG+GT+GA AK+L R FIGIE  + Y  
Sbjct: 183 GDKAHPTQKPEALLHRVLLSASRVGDVVLDPFFGTGTTGAAAKRLGRRFIGIERDETYAK 242

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A KRI +V P    +L V   K+ EP+V F  LVE GL+ PG  L   +G   A V AD
Sbjct: 243 LAEKRIKAVIPAAPEDLVVTGSKKAEPKVPFGALVEAGLLAPGDKLYCPKGEREARVRAD 302

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           G+L+SG   GSIH++GA +  +  CNGW +W F+    L  I+ LR  +R  + 
Sbjct: 303 GSLVSGALTGSIHKLGALLENAPACNGWTYWRFKTDTGLRPIDALRAEIRAGMQ 356


>gi|16124633|ref|NP_419197.1| modification methylase CcrMI [Caulobacter crescentus CB15]
 gi|221233321|ref|YP_002515757.1| adenine-specific methyltransferase ccrM [Caulobacter crescentus
           NA1000]
 gi|239977504|sp|B8GZ33|MTC1_CAUCN RecName: Full=Modification methylase CcrMI; Short=M.CcrMI; AltName:
           Full=Adenine-specific methyltransferase CcrMI
 gi|239977505|sp|P0CAW2|MTC1_CAUCR RecName: Full=Modification methylase CcrMI; Short=M.CcrMI; AltName:
           Full=Adenine-specific methyltransferase CcrMI
 gi|13421535|gb|AAK22365.1| modification methylase CcrMI [Caulobacter crescentus CB15]
 gi|220962493|gb|ACL93849.1| adenine-specific methyltransferase ccrM [Caulobacter crescentus
           NA1000]
          Length = 358

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 213/352 (60%), Positives = 258/352 (73%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G+ I  +  LP KSVDLIFADPPYNLQL G L RPD+S VDAV D WD+F SF AY
Sbjct: 7   TIIHGDCIEQMNALPEKSVDLIFADPPYNLQLGGDLLRPDNSKVDAVDDHWDQFESFAAY 66

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTR WL A RRVLK +G +WVIGSYHNIFR+G  +Q+L FWILNDIVWRKSNPMPNF+
Sbjct: 67  DKFTREWLKAARRVLKDDGAIWVIGSYHNIFRVGVAVQDLGFWILNDIVWRKSNPMPNFK 126

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G RF NAHETLIWAS S  AK YTFNYDALK AN++VQMRSDW IP+C+G ER++  DG+
Sbjct: 127 GTRFANAHETLIWASKSQNAKRYTFNYDALKMANDEVQMRSDWTIPLCTGEERIKGADGQ 186

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HPTQKPEALL R+++S+TKPGD+ILDPFFG GT+GA AK+L R FIGIE + +Y++ A
Sbjct: 187 KAHPTQKPEALLYRVILSTTKPGDVILDPFFGVGTTGAAAKRLGRKFIGIEREAEYLEHA 246

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
             RIA V P+   +L V+  KR EPRV F  +VE GL+ PG  L  ++G   A V  DG+
Sbjct: 247 KARIAKVVPIAPEDLDVMGSKRAEPRVPFGTIVEAGLLSPGDTLYCSKGTHVAKVRPDGS 306

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           +  G   GSIH++GA V  +  CNGW +W+F+    L  I+ LR  VR  + 
Sbjct: 307 ITVGDLSGSIHKIGALVQSAPACNGWTYWHFKTDAGLAPIDVLRAQVRAGMN 358


>gi|294675758|ref|YP_003576373.1| adenine-specific DNA-methyltransferase [Rhodobacter capsulatus SB
           1003]
 gi|294474578|gb|ADE83966.1| site-specific DNA-methyltransferase (adenine-specific) [Rhodobacter
           capsulatus SB 1003]
          Length = 367

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 207/353 (58%), Positives = 266/353 (75%), Gaps = 1/353 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I+ G+ I V+ +LP  SVDLIFADPPYNLQL G L+RPD+S VDAV D+WD+F SF+ 
Sbjct: 16  NEILAGDCIDVMNRLPEASVDLIFADPPYNLQLRGDLHRPDNSKVDAVDDAWDQFGSFDH 75

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL A +R+LKPNG +WVIGSYHN+FR+G  LQN  FWILND+VWRKSNPMPNF
Sbjct: 76  YDTFTRDWLAAAKRILKPNGAIWVIGSYHNVFRLGAELQNQGFWILNDVVWRKSNPMPNF 135

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+R  NAHETLIWAS S  AK YTFNY+ALKA NE +QMRSDW++PIC+G+ERL++  G
Sbjct: 136 RGKRLTNAHETLIWASKSEGAK-YTFNYEALKALNEGIQMRSDWVLPICTGNERLKDDAG 194

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPE+LL RI++ +T  GD++LDPFFG+GT+GAVAK L R FIGIE ++ Y + 
Sbjct: 195 DKAHPTQKPESLLHRIILGTTNAGDVVLDPFFGTGTTGAVAKMLGRDFIGIEREEAYREA 254

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KRI  V+      L +   KR EPRV F  LVERG+++PG+ L +      A V ADG
Sbjct: 255 ARKRIDKVRKFDREALEITGSKRAEPRVPFGQLVERGMLRPGEELYSIGNRFKAKVRADG 314

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           TL+     GSIH+VGA + G+ +CNGW +W+F++ G++  I+ LR  +R E+ 
Sbjct: 315 TLVGNDVKGSIHQVGAHLEGAPSCNGWTYWHFKRDGKMVPIDLLRQQIRAEMN 367


>gi|118590772|ref|ZP_01548173.1| adenine dna methyltransferase protein [Stappia aggregata IAM 12614]
 gi|118436748|gb|EAV43388.1| adenine dna methyltransferase protein [Stappia aggregata IAM 12614]
          Length = 379

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 219/368 (59%), Positives = 278/368 (75%), Gaps = 1/368 (0%)

Query: 6   SLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV 65
           +  ++    +   W + I+KG+ ++ LEKLP++SVDL+FADPPYNLQL G L+RPD S V
Sbjct: 12  APRLSNEPEAGASWLNTILKGDCVAALEKLPSRSVDLVFADPPYNLQLGGDLHRPDQSKV 71

Query: 66  DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
           DA  D WD+F SFEAYDAFTRAWLLA RRV+K +G+L+VIGSYHNIFR+G +LQ+L FWI
Sbjct: 72  DACDDHWDQFESFEAYDAFTRAWLLAVRRVMKADGSLYVIGSYHNIFRVGAILQDLGFWI 131

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
           +NDIVW KSNPMPNFRG+RF NAHET+IWA  S  AK  TFNYDALK  NED+QMRSDW 
Sbjct: 132 MNDIVWLKSNPMPNFRGKRFTNAHETMIWAVKSKDAKP-TFNYDALKTFNEDLQMRSDWH 190

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P+C+G+ERL+ KDG+K+HPTQKPEALL R+L +S+KPGD++LDPFFG+GT+GAVAKKL 
Sbjct: 191 LPLCTGAERLKGKDGQKVHPTQKPEALLYRVLTASSKPGDVVLDPFFGTGTTGAVAKKLG 250

Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL 305
           R ++G+E +QDYID AT RI +++P     L +  GKR   R+ F  L+E GL+QPG  L
Sbjct: 251 RHYVGVEREQDYIDAATARIEAIEPGDAASLEMQQGKRALKRIPFGTLLESGLLQPGTEL 310

Query: 306 TNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLR 365
           +  +G   A V ADG+L SG   GSIH+VGA V G E CNGW FW+  + G+   I+ LR
Sbjct: 311 SCPKGKHLAIVRADGSLKSGDHTGSIHKVGALVQGQEACNGWTFWHINEGGKTSPIDDLR 370

Query: 366 ILVRKELY 373
             +R  L 
Sbjct: 371 KEIRSRLQ 378


>gi|85705986|ref|ZP_01037082.1| modification methylase [Roseovarius sp. 217]
 gi|85669574|gb|EAQ24439.1| modification methylase [Roseovarius sp. 217]
          Length = 371

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 209/353 (59%), Positives = 271/353 (76%), Gaps = 1/353 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + II G+ I V+  LP  SVDLIFADPPYNLQL G L+RPD+S VDAV D+WD+F+SF A
Sbjct: 16  NTIIAGDCIEVMNSLPEASVDLIFADPPYNLQLKGDLHRPDNSQVDAVDDAWDQFASFAA 75

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FT  WL A RR+LKP+G +WVIGSYHNIFR+G  LQ+  +WILND++WRKSNPMPNF
Sbjct: 76  YDKFTHDWLKAARRLLKPHGAIWVIGSYHNIFRVGAALQDAGYWILNDVIWRKSNPMPNF 135

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+R  NAHET+IWAS S  AK YTFNY+ALK+ N+ VQMRSDW++P+C+G ERL++  G
Sbjct: 136 RGKRLTNAHETMIWASKSEGAK-YTFNYEALKSLNDGVQMRSDWVLPLCTGHERLKDDKG 194

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPE+LL R+LV ST PGD+ILDPFFG+GT+GAVAK L R +IGIE +  Y  +
Sbjct: 195 DKAHPTQKPESLLHRVLVGSTNPGDVILDPFFGTGTTGAVAKMLGRDYIGIEREAAYRVV 254

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KR+AS++      L V T KR EPRV F  L+ERG+++PG++LT+  G  +A V ADG
Sbjct: 255 AEKRLASIRKFDRDALQVSTSKRAEPRVPFGQLIERGMLRPGEMLTSMNGKCAAKVRADG 314

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           TL++ +  GSIH+VGA + G+ +CNGW +W F++ G++  I+ LR  +R E+ 
Sbjct: 315 TLVADSIKGSIHQVGAHLEGAPSCNGWTYWCFKREGKVVPIDVLRQQIRSEME 367


>gi|119384833|ref|YP_915889.1| DNA methylase N-4/N-6 domain-containing protein [Paracoccus
           denitrificans PD1222]
 gi|119374600|gb|ABL70193.1| DNA methylase N-4/N-6 domain protein [Paracoccus denitrificans
           PD1222]
          Length = 376

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 209/353 (59%), Positives = 264/353 (74%), Gaps = 1/353 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I+ G+ I ++  LP  SVDLIFADPPYNLQL G+L+RPD+S VDAV D WD+FS F A
Sbjct: 18  NQILAGDCIEIMNALPEASVDLIFADPPYNLQLKGELHRPDNSRVDAVDDHWDQFSGFAA 77

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL A RR+LKP+G +WVIGSYHNIFR+G  LQN  FWILND+VWRK+NPMPNF
Sbjct: 78  YDRFTRDWLAAARRILKPDGAIWVIGSYHNIFRVGAELQNQGFWILNDVVWRKANPMPNF 137

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+R  NAHET+IWAS S  AK YTFNY+ALK+ NE VQMRSDW++PIC+G ERL++  G
Sbjct: 138 RGKRLTNAHETMIWASKSEGAK-YTFNYEALKSLNEGVQMRSDWVLPICTGGERLKDAGG 196

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K HPTQKPEALL RILV ST PGD++LDPFFG+GT+GAVAK L R FIGIE +  Y ++
Sbjct: 197 AKAHPTQKPEALLHRILVGSTNPGDVVLDPFFGTGTTGAVAKMLGRDFIGIEREAAYREV 256

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KRIA ++   +  +  +  KR EPRV F  +VERG+++PG+ L +      A V ADG
Sbjct: 257 AEKRIARIRKFDSEAIATIKPKRAEPRVPFGQVVERGMLRPGEELYSLNNRHKAKVRADG 316

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           +LI     GSIH+VGA + G+ +CNGW +W+F + G +  I+ LR  +R E+ 
Sbjct: 317 SLIGNDVKGSIHQVGAALEGAPSCNGWTYWHFRREGRMVPIDILRQQIRAEME 369


>gi|110677702|ref|YP_680709.1| modification methylase [Roseobacter denitrificans OCh 114]
 gi|109453818|gb|ABG30023.1| modification methylase [Roseobacter denitrificans OCh 114]
          Length = 364

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 214/353 (60%), Positives = 268/353 (75%), Gaps = 2/353 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + II G+ I V+  LP  SVDLIFADPPYNLQL G L+RPD+S VDAV D WD+FSSF+A
Sbjct: 13  NTIIDGDCIEVMNGLPEASVDLIFADPPYNLQLKGDLHRPDNSRVDAVDDEWDQFSSFKA 72

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FT+AWL A RR+LKP+G +WVIGSYHNIFR+G  LQN  +WILND+VWRKSNPMPNF
Sbjct: 73  YDNFTKAWLKAARRILKPDGAIWVIGSYHNIFRVGAELQNQGYWILNDVVWRKSNPMPNF 132

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+RF NAHET+IWA     +K YTFNY+ALKA NE +QMRSDW++PIC+G ERL++++G
Sbjct: 133 RGKRFTNAHETMIWAGRDESSK-YTFNYEALKALNEGIQMRSDWVLPICTGHERLKDENG 191

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPE+LL R+LV +T PGD+ILDPFFG+GT+GAVAK L R FIGIE +  Y  +
Sbjct: 192 DKAHPTQKPESLLHRVLVGATNPGDVILDPFFGTGTTGAVAKMLGRDFIGIEREAAYRKV 251

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KRIA V+      L V   KR EPRV F  LVERG+++PG+ L + +G + A V ADG
Sbjct: 252 AEKRIAKVRKFDREALQVSVSKRAEPRVPFGQLVERGMLRPGEALYSPRGQV-AKVRADG 310

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           TLI     GSIH+VGA + G+ +CNGW +W F++ G+   I+ LR  +R E+ 
Sbjct: 311 TLIGNDVKGSIHQVGAHLEGAPSCNGWTYWTFKQDGKKIPIDVLRQQIRSEMS 363


>gi|167648322|ref|YP_001685985.1| DNA methylase N-4/N-6 domain-containing protein [Caulobacter sp.
           K31]
 gi|167350752|gb|ABZ73487.1| DNA methylase N-4/N-6 domain protein [Caulobacter sp. K31]
          Length = 358

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 214/352 (60%), Positives = 262/352 (74%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II+G+ I  +  LP KSVDLIFADPPYNLQL G L RPD+S VDAV D WD+F SF AY
Sbjct: 7   TIIQGDCIEAMNALPEKSVDLIFADPPYNLQLGGDLLRPDNSKVDAVDDHWDQFESFAAY 66

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTR WL A RRVLK +G +WVIGSYHNIFR+G  +Q+L FWILND++WRKSNPMPNF+
Sbjct: 67  DKFTREWLKAARRVLKDDGAIWVIGSYHNIFRVGVAVQDLGFWILNDVIWRKSNPMPNFK 126

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G RF NAHETLIWAS S  AK YTFNYDALK AN++VQMRSDW +P+C+G ER++  DG 
Sbjct: 127 GTRFANAHETLIWASKSQGAKRYTFNYDALKMANDEVQMRSDWTLPLCTGEERIKGADGN 186

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HPTQKPEALL R+++S+TKPGD+ILDPFFG GT+GA AK+L R F+GIE + DYI+ A
Sbjct: 187 KAHPTQKPEALLYRVILSTTKPGDVILDPFFGVGTTGAAAKRLGRRFVGIERESDYIEHA 246

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
             RIA V P+   +L V+  KR+EPRV F  +VE GL+ PG  L  A+G+ +A V ADG+
Sbjct: 247 KARIAKVVPIAPGDLDVMGSKRSEPRVPFGNIVEAGLLNPGDTLYCAKGSHAAKVRADGS 306

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           +  G   GSIH+VGA V  +  CNGW +W+F+    L  I+ LR  VR  + 
Sbjct: 307 ITVGDLSGSIHKVGALVQSAPACNGWTYWHFKTDKGLAPIDVLRSQVRAGMN 358


>gi|149202923|ref|ZP_01879894.1| modification methylase [Roseovarius sp. TM1035]
 gi|149143469|gb|EDM31505.1| modification methylase [Roseovarius sp. TM1035]
          Length = 370

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 206/353 (58%), Positives = 272/353 (77%), Gaps = 2/353 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + II G+ I V+  LP  SVDLIFADPPYNLQL G L+RPD+S VDAV D+WD+F+SF A
Sbjct: 16  NTIIAGDCIEVMNSLPEASVDLIFADPPYNLQLKGDLHRPDNSQVDAVDDAWDQFASFAA 75

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FT+ WL A RR+LKP+G +WVIGSYHNIFR+G  LQ+  +WILND++WRKSNPMPNF
Sbjct: 76  YDKFTQDWLKAARRLLKPHGAIWVIGSYHNIFRVGAALQDAGYWILNDVIWRKSNPMPNF 135

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+R  NAHET+IWAS S  AK YTFNY+ALK+ N+ VQMRSDW++P+C+G ERL++ +G
Sbjct: 136 RGKRLTNAHETMIWASKSEGAK-YTFNYEALKSLNDGVQMRSDWVLPLCTGHERLKDDNG 194

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPE+LL R+LV ST PGD++LDPFFG+GT+GAVAK L R +IGIE +  Y  +
Sbjct: 195 DKAHPTQKPESLLHRVLVGSTNPGDVVLDPFFGTGTTGAVAKMLGRDYIGIEREAAYRSV 254

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KR+A+++      L V T KR EPRV F  L+ERG+++PG++LT+  G  +A V ADG
Sbjct: 255 AEKRLANIRKFDRDALQVSTSKRAEPRVPFGQLIERGMLRPGEVLTSINGK-AAKVRADG 313

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           TL++    GSIH++GA + G+ +CNGW +W F++ G++  I+ LR  +R E+ 
Sbjct: 314 TLVADGINGSIHQIGAHLEGAPSCNGWTYWCFKREGKVVPIDVLRQQIRSEME 366


>gi|126728137|ref|ZP_01743953.1| modification methylase [Sagittula stellata E-37]
 gi|126711102|gb|EBA10152.1| modification methylase [Sagittula stellata E-37]
          Length = 365

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 209/352 (59%), Positives = 273/352 (77%), Gaps = 2/352 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I+ G+ I V+  LP  SVDLIFADPPYNLQL G+L+RPD+S VDAV D WD+FS+F A
Sbjct: 16  NQILDGDCIQVMNSLPEASVDLIFADPPYNLQLKGELHRPDNSRVDAVDDHWDQFSNFAA 75

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YDAFT+ WL A RR+LKP+G +WVIGSYHNIFR+G  LQ+  FWILND++WRK+NPMPNF
Sbjct: 76  YDAFTQDWLRAARRLLKPDGAIWVIGSYHNIFRVGAALQDAGFWILNDVIWRKANPMPNF 135

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+RF NAHET+IWAS S  AK YTFNY+ALK+ NE +QMRSDW++PIC+G ERL++ +G
Sbjct: 136 RGKRFTNAHETMIWASKSEGAK-YTFNYEALKSLNEGIQMRSDWVLPICNGGERLKDANG 194

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKP++LL R++V ST PGD++LDPFFG+GT+GAVAK L R +IGIE +  Y ++
Sbjct: 195 DKAHPTQKPQSLLHRVIVGSTNPGDVVLDPFFGTGTTGAVAKMLGRDWIGIEREAAYREV 254

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KR+  V+      L V T KR EPRV F  LVERG+++PG++L N +G + A V ADG
Sbjct: 255 ALKRLGDVRAFDKGALEVSTSKRAEPRVPFGQLVERGMLRPGEMLINGRGQM-AKVRADG 313

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           TL+     GSIH+VGAK+ G+ +CNGW +W+F + G+   I+ LR  +R E+
Sbjct: 314 TLVGDGVTGSIHQVGAKLEGAPSCNGWTYWHFRRDGKTVPIDVLRQQIRSEM 365


>gi|84687972|ref|ZP_01015836.1| modification methylase [Maritimibacter alkaliphilus HTCC2654]
 gi|84664004|gb|EAQ10504.1| modification methylase [Rhodobacterales bacterium HTCC2654]
          Length = 364

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 218/352 (61%), Positives = 270/352 (76%), Gaps = 2/352 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I+ G+ I V+  LP  SVDLIFADPPYNLQL G L+RPD+S VDAV D WD+F+SF+ 
Sbjct: 14  NQILPGDCIEVMNSLPEGSVDLIFADPPYNLQLKGDLHRPDNSKVDAVDDEWDQFASFKV 73

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL A RR+LKPNG +WVIGSYHN+FR+G  LQN  FWILND+VWRKSNPMPNF
Sbjct: 74  YDDFTREWLAAARRLLKPNGAIWVIGSYHNVFRMGAELQNQGFWILNDVVWRKSNPMPNF 133

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+R  NAHETLIWA  S  +K  TFNY+ALK+ NE VQMRSDW+IPIC+G ERL++ +G
Sbjct: 134 RGKRLTNAHETLIWAQKSEDSKA-TFNYEALKSLNEGVQMRSDWVIPICNGGERLKDDNG 192

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           EK HPTQKPEALL R+LV +T PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y  +
Sbjct: 193 EKAHPTQKPEALLHRVLVGTTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREEAYRKV 252

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KRI+ ++      LTV T KR EPRVAF  LVERG+++PG+ L   +G I A V ADG
Sbjct: 253 AEKRISKIRKFDKEALTVSTSKRAEPRVAFGQLVERGMLRPGETLIGPRGQI-AKVRADG 311

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           TLISG   GSIH+VGA +  + +CNGW +W F++ G+  SI+ LR  +R E+
Sbjct: 312 TLISGEARGSIHQVGAALESAPSCNGWTYWAFKRDGKTVSIDVLRQQIRAEM 363


>gi|154251158|ref|YP_001411982.1| DNA methylase N-4/N-6 domain-containing protein [Parvibaculum
           lavamentivorans DS-1]
 gi|154155108|gb|ABS62325.1| DNA methylase N-4/N-6 domain protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 367

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 209/350 (59%), Positives = 265/350 (75%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+G+ I  +  LP KSVDLIFADPPYNLQL G L RPD S VDAV D WDKF+SF+ YD
Sbjct: 15  IIQGDCIEAMNALPEKSVDLIFADPPYNLQLGGGLTRPDQSKVDAVDDDWDKFASFQVYD 74

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FTR W+ A RRVLK  G +WVIGSYHNIFR+G  LQ+L FW++ND+VWRKSNPMPNFRG
Sbjct: 75  EFTRNWMNAARRVLKDTGAIWVIGSYHNIFRVGATLQDLGFWMMNDVVWRKSNPMPNFRG 134

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
            RF NAHETLIWA+ S   K YTFNYDA+KA N+D+QMRSDWL+PIC+G ERL++ DG+K
Sbjct: 135 TRFTNAHETLIWATKSADQKKYTFNYDAMKALNDDLQMRSDWLLPICTGGERLKDGDGDK 194

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPEALL R+L+++T  GD +LDPFFG+GT+GAVAKKL R+F+GIE ++ YI +A 
Sbjct: 195 AHPTQKPEALLHRVLLATTNAGDTVLDPFFGTGTTGAVAKKLGRNFVGIEREERYIKVAR 254

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           +RI  ++     +L V T K+ E R+ F  L+ERGL++PG +LT+     +A V ADG++
Sbjct: 255 ERIRLIKTGAPEDLKVTTSKKAEVRIPFGTLIERGLLEPGAVLTDPAKRHAARVRADGSI 314

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           +     GSIH++GA V G + CNGW FW+F+  G+L  I+ LR  VR E+
Sbjct: 315 VCRDATGSIHKIGAHVQGLDACNGWTFWHFKTDGKLKPIDILRQKVRAEM 364


>gi|84515025|ref|ZP_01002388.1| modification methylase [Loktanella vestfoldensis SKA53]
 gi|84511184|gb|EAQ07638.1| modification methylase [Loktanella vestfoldensis SKA53]
          Length = 385

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 213/353 (60%), Positives = 269/353 (76%), Gaps = 1/353 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + II G+ I+V+  LPA SVDLIFADPPYNLQL G L+RP++S VDAV D+WD+F SF A
Sbjct: 32  NTIIDGDCIAVMNSLPAGSVDLIFADPPYNLQLKGDLHRPNNSKVDAVDDAWDQFDSFAA 91

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FT+AWL A RR+LKPNG +WVIGSYHN+FR+G  LQN  FWILND+VWRKSNPMPNF
Sbjct: 92  YDRFTKAWLAAARRLLKPNGAIWVIGSYHNVFRMGAELQNQGFWILNDVVWRKSNPMPNF 151

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+R  NAHETLIWAS    +K YTFNY+ALK+ NE VQMRSDW++PIC+G ERL++  G
Sbjct: 152 RGKRLTNAHETLIWASKEEASK-YTFNYEALKSLNEGVQMRSDWVLPICTGHERLKDDQG 210

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKP++LL R++V +T PGD+ILDPFFG+GT+GAVAK L R FIGIE +  Y  +
Sbjct: 211 DKAHPTQKPQSLLHRVIVGTTNPGDVILDPFFGTGTTGAVAKMLGRDFIGIEREAAYRKV 270

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KRIA+ +      L V + KR+EPRVAF +LVERG+++PG+ L +  G   A V ADG
Sbjct: 271 AEKRIANTRKFDTEALEVSSSKRSEPRVAFGVLVERGMLRPGEELWSMNGRHKAKVRADG 330

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           TLI     GSIH+VGA + G+ +CNGW +W F++ G+   I+ LR  +R E+ 
Sbjct: 331 TLIGDDIKGSIHQVGAHLEGAPSCNGWTYWQFKRDGQKVPIDLLRQQIRSEME 383


>gi|114764187|ref|ZP_01443425.1| modification methylase [Pelagibaca bermudensis HTCC2601]
 gi|114543339|gb|EAU46355.1| modification methylase [Roseovarius sp. HTCC2601]
          Length = 367

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 211/353 (59%), Positives = 270/353 (76%), Gaps = 2/353 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I+ G+ I ++  LPA+SVDLIFADPPYNLQL G L+RPD+S VDAV D WD+F+SFE 
Sbjct: 13  NTILAGDCIEMMNSLPAESVDLIFADPPYNLQLRGDLHRPDNSRVDAVDDHWDQFASFEV 72

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL A +R+LKPNG +WVIGSYHNIFR+G  LQ+  +WILND++WRKSNPMPNF
Sbjct: 73  YDRFTREWLAAAKRLLKPNGAIWVIGSYHNIFRVGAALQDAGYWILNDVIWRKSNPMPNF 132

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+RF NAHET+IWAS    AK YTFNY+ALKA NE +QMRSDW++PIC+G ERL++ +G
Sbjct: 133 RGKRFTNAHETMIWASKGEGAK-YTFNYEALKALNEGIQMRSDWVLPICNGGERLKDANG 191

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKP +LL R+LV ST PGD++LDPFFG+GT+GAVAK L R +IGIE +  Y ++
Sbjct: 192 DKAHPTQKPASLLHRVLVGSTNPGDVVLDPFFGTGTTGAVAKMLGRDWIGIEREAAYREV 251

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A +RIA V+      L V   KR EPRV F  LVERGL++PG++L +A G + A V ADG
Sbjct: 252 AERRIADVRAYDRSSLEVTRAKRAEPRVPFGQLVERGLLRPGEMLVSANGKV-AKVRADG 310

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           TL+     GSIH+VGA + G+ +CNGW +W+F K G++  I+ LR  +R E+ 
Sbjct: 311 TLVGDDVKGSIHQVGAHLEGAPSCNGWTYWHFRKDGKVVPIDVLRQQIRAEMA 363


>gi|254417828|ref|ZP_05031552.1| DNA methylase domain protein [Brevundimonas sp. BAL3]
 gi|196184005|gb|EDX78981.1| DNA methylase domain protein [Brevundimonas sp. BAL3]
          Length = 369

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 211/354 (59%), Positives = 263/354 (74%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           KD I +G+ I+VL+ LP  SVD++FADPPYNLQL G L RPD+S VDAV D WDKF SF 
Sbjct: 16  KDVIHRGDCIAVLKSLPDASVDMVFADPPYNLQLGGDLLRPDNSKVDAVDDDWDKFDSFA 75

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YD FTRAWL  CRRVLKP G++WVIGSYHN+FR+G  +Q+L FW+LNDI+WRKSNPMPN
Sbjct: 76  EYDTFTRAWLTECRRVLKPEGSIWVIGSYHNVFRLGAAIQDLGFWVLNDIIWRKSNPMPN 135

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           F+G RF NAHETLIWA+ S + K YTFNYDALKA NED QMRSDW   +C+G ER+++ D
Sbjct: 136 FKGTRFTNAHETLIWAARSREQKRYTFNYDALKAFNEDTQMRSDWTFALCTGEERIKDAD 195

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKPEALL R+L+S+T+PGD++LDPFFG+GT+GA AK+L R +IGIE  + Y +
Sbjct: 196 GKKAHPTQKPEALLHRVLLSATRPGDVVLDPFFGTGTTGAAAKRLGRHYIGIERDETYAE 255

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A  RIASV P    +L V+  KR EP+V F  LVE GL+ PG  L   +G   A V AD
Sbjct: 256 VAETRIASVIPANPEDLMVMGSKRAEPKVPFGALVEAGLLHPGDRLYCPKGEREARVRAD 315

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           G+L+SG+  GSIH++GA    +  CNGW +W F+    L SI+ LR  VR  + 
Sbjct: 316 GSLVSGSLTGSIHKLGALFENAPACNGWTYWRFKTDQGLKSIDALRAEVRAGMQ 369


>gi|83950882|ref|ZP_00959615.1| modification methylase [Roseovarius nubinhibens ISM]
 gi|83838781|gb|EAP78077.1| modification methylase [Roseovarius nubinhibens ISM]
          Length = 371

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 208/354 (58%), Positives = 262/354 (74%), Gaps = 1/354 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I+ G+ I V+  LP  SVDLIFADPPYNLQL G+L+RPD+S VDAV D+WD+FSSF A
Sbjct: 16  NTILSGDCIEVMNSLPEASVDLIFADPPYNLQLKGELHRPDNSQVDAVDDAWDQFSSFAA 75

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FT  WL A RR+LKPNG +WVIGSYHNIFR+G  LQN  FWILND+VWRKSNPMPNF
Sbjct: 76  YDKFTTEWLRAARRLLKPNGAIWVIGSYHNIFRVGASLQNEGFWILNDVVWRKSNPMPNF 135

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+R  NAHET+IWAS     K YTFNY+ALK+ NE +QMRSDW++PIC+G ERL++ +G
Sbjct: 136 RGKRLTNAHETMIWASKEEGGK-YTFNYEALKSLNEGIQMRSDWVLPICTGHERLKDANG 194

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPE+LL RILV ST PGD++LDPFFG+GT+GAVAK L R +IGIE +  Y ++
Sbjct: 195 DKAHPTQKPESLLHRILVGSTNPGDVVLDPFFGTGTTGAVAKMLGRDYIGIEREAAYREV 254

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KR+A V+      L V   KR EPRV F  L+ERG+++PG+ L +      A V ADG
Sbjct: 255 AEKRLAKVRKYDREALQVSQSKRAEPRVPFGQLIERGMLRPGENLYSMNLRHKAKVRADG 314

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           TLI     GSIH+VGA + G+ +CNGW +W  ++ G+   I+  R  +R E+ +
Sbjct: 315 TLIGDDIKGSIHQVGAALEGAPSCNGWTYWCIKRDGKQVPIDVFRQQIRAEMAD 368


>gi|260574051|ref|ZP_05842056.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sp. SW2]
 gi|259023517|gb|EEW26808.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sp. SW2]
          Length = 375

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 206/353 (58%), Positives = 266/353 (75%), Gaps = 1/353 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I++G+ I+ +  LPA S+DLIFADPPYNLQL G L+RPD+SLVDAV D WD+FSSF A
Sbjct: 16  NQILEGDCIAAMNGLPAASIDLIFADPPYNLQLKGDLHRPDNSLVDAVDDHWDQFSSFAA 75

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FT  WL A RR+LKPNG +WVIGSYHNIFR+G  LQ+  FW+LND+VWRKSNPMPNF
Sbjct: 76  YDKFTHDWLAAARRLLKPNGAIWVIGSYHNIFRVGAALQDQGFWLLNDVVWRKSNPMPNF 135

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+R  NAHETLIWAS    +K YTFNY+ALKA N+ VQMRSDW++PIC+G ERL++  G
Sbjct: 136 RGKRLTNAHETLIWASKEEASK-YTFNYEALKALNDGVQMRSDWVLPICTGHERLKDAAG 194

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPE+LL RIL+++T PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y   
Sbjct: 195 DKAHPTQKPESLLHRILLATTNPGDVVLDPFFGTGTTGAVAKMLGRDFIGIEREEIYRQA 254

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           AT+R++ V+      L     KR EPRV F  +VERG+++PG+ L +        V ADG
Sbjct: 255 ATERLSRVRRFDATGLETTGSKRAEPRVPFGQVVERGMLRPGEELFSLGNRFKVKVRADG 314

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           TLI     GSIH+VGA + G+ +CNGW +W+F++ G++  I+ LR  +R E+ 
Sbjct: 315 TLIGNDVKGSIHQVGAALEGAPSCNGWTYWHFKRDGKMVPIDILRQQIRAEME 367


>gi|115526424|ref|YP_783335.1| DNA methylase N-4/N-6 domain-containing protein [Rhodopseudomonas
           palustris BisA53]
 gi|115520371|gb|ABJ08355.1| DNA adenine methylase CcrM [Rhodopseudomonas palustris BisA53]
          Length = 379

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 216/362 (59%), Positives = 270/362 (74%)

Query: 12  NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
           N  S      +I+ G+ ++ + KLP  SVDL+FADPPYNLQL G L RPD S VDAV D 
Sbjct: 16  NFESSSPSDSRIVIGDCVAEMSKLPKASVDLVFADPPYNLQLKGDLKRPDESHVDAVNDD 75

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           WDKFSSF AYD FTRAWLL+CRR++KP+ T+WVIGSYHNIFR+G ++Q+L FW+LNDIVW
Sbjct: 76  WDKFSSFAAYDDFTRAWLLSCRRIMKPSATIWVIGSYHNIFRVGAIMQDLGFWVLNDIVW 135

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
           RKSNPMPNFRGRRF NAHET+IWA+    AKGYTFNY+ALKAANEDVQ RSDWLIP+C+G
Sbjct: 136 RKSNPMPNFRGRRFTNAHETMIWAARDENAKGYTFNYEALKAANEDVQARSDWLIPLCTG 195

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
            ERL+  DG+K+HPTQKPE LL+R+L+SS+KPGD+++DPF G+GT+GAVAK+L R +IG 
Sbjct: 196 DERLKGADGKKVHPTQKPEGLLARVLLSSSKPGDLVIDPFNGTGTTGAVAKRLGRRYIGF 255

Query: 252 EMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
           E  +DY   A  RI +++PL    L      R+ PRVAF  LVERG+I PG  L +++  
Sbjct: 256 ERDKDYAKAARARIDAIEPLPEATLAPFVTARSAPRVAFAELVERGMILPGTKLVDSKKR 315

Query: 312 ISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
             A V ADG ++ G ++GSIHR+GA   GSE CNGW FW+ E    L  I+ LR  +R  
Sbjct: 316 HGALVRADGAIMLGDKVGSIHRIGAVAQGSEACNGWTFWHVETKKGLKLIDELRAEIRSG 375

Query: 372 LY 373
           + 
Sbjct: 376 MA 377


>gi|260425326|ref|ZP_05779306.1| modification methylase CcrMI [Citreicella sp. SE45]
 gi|260423266|gb|EEX16516.1| modification methylase CcrMI [Citreicella sp. SE45]
          Length = 370

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 211/353 (59%), Positives = 270/353 (76%), Gaps = 2/353 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I+ G+ I ++  LP +SVDLIFADPPYNLQL G+L+RPD+S VDAV D WD+F+SF A
Sbjct: 16  NTILDGDCIEMMNSLPEESVDLIFADPPYNLQLKGELHRPDNSRVDAVDDHWDQFASFAA 75

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL A RRVLKPNG +WVIGSYHNIFR+G  LQ+  +WILND+VWRKSNPMPNF
Sbjct: 76  YDQFTREWLAAARRVLKPNGAIWVIGSYHNIFRVGAALQDAGYWILNDVVWRKSNPMPNF 135

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+RF NAHET+IWAS S  AK YTFNY+ALKA NE +QMRSDW++PIC+G ERL++ +G
Sbjct: 136 RGKRFTNAHETMIWASKSDAAK-YTFNYEALKALNEGIQMRSDWVLPICNGGERLKDANG 194

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKP +LL R+LV ST PGD++LDPFFG+GT+GAVAK L R +IGIE +  Y ++
Sbjct: 195 DKAHPTQKPMSLLHRVLVGSTNPGDVVLDPFFGTGTTGAVAKMLGRDWIGIEREAAYREV 254

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           AT+RIA ++      L V   KR EPR+ F  LVERG+++PG++L +  G + A V ADG
Sbjct: 255 ATRRIADIRAFDRSALEVTRAKRAEPRIPFGQLVERGMLRPGEMLVSPSGKV-AKVRADG 313

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           TL+     GSIH+VGA + G+ +CNGW +W+F K G+   I+ LR  +R E+ 
Sbjct: 314 TLVGDDVKGSIHQVGAHLEGAPSCNGWTYWHFRKDGKHVPIDVLRQQIRAEMA 366


>gi|110633120|ref|YP_673328.1| DNA adenine methylase CcrM [Mesorhizobium sp. BNC1]
 gi|110284104|gb|ABG62163.1| DNA adenine methylase CcrM [Chelativorans sp. BNC1]
          Length = 372

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 234/355 (65%), Positives = 288/355 (81%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           +W D I+KG+ ++ LE+LP KSVD+IFADPPYNLQL G L+RPD SLVDAV D WD+F S
Sbjct: 18  DWLDDILKGDCVAALERLPEKSVDVIFADPPYNLQLEGALHRPDQSLVDAVDDEWDQFES 77

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           F AYDAFTRAWLLA RRVLKPNGT+WVIGSYHNIFR+G ++Q+L FWILNDIVWRK+NPM
Sbjct: 78  FAAYDAFTRAWLLAARRVLKPNGTVWVIGSYHNIFRVGAIMQDLGFWILNDIVWRKTNPM 137

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PNFRGRRFQNAHET+IWAS    AKGYTFNY+A+KAAN+D+QMRSDWL PIC+G ERL++
Sbjct: 138 PNFRGRRFQNAHETMIWASRDRNAKGYTFNYEAMKAANDDLQMRSDWLFPICTGKERLKD 197

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
            DG K+HPTQKPEALL+R+L+SSTKPGD++LDPFFGSGT+GAVAK+L R F+GIE   DY
Sbjct: 198 ADGNKVHPTQKPEALLARVLLSSTKPGDVVLDPFFGSGTTGAVAKRLGRHFVGIERDPDY 257

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
           I  A +RIA+V+PL    L  +  KR EPR+AF  L++ GL++PG  L +++   +A V 
Sbjct: 258 IAAARERIAAVEPLDQAALAPMAAKREEPRIAFASLLDSGLVKPGMQLYDSKRRWAAHVR 317

Query: 318 ADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           ADGTL  G E GSIHR+GA+V G + CNGW FW++E+ G L  I+ LR + R+ L
Sbjct: 318 ADGTLAVGPETGSIHRLGARVQGLDACNGWTFWHYEEKGALKPIDELRQVARRGL 372


>gi|154245121|ref|YP_001416079.1| DNA methylase N-4/N-6 domain-containing protein [Xanthobacter
           autotrophicus Py2]
 gi|154159206|gb|ABS66422.1| DNA methylase N-4/N-6 domain protein [Xanthobacter autotrophicus
           Py2]
          Length = 389

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 235/354 (66%), Positives = 280/354 (79%), Gaps = 3/354 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+I+ G+SI ++  LPA SVDL+FADPPYNLQL G+L RPD SLVDAV D WD+F SF  
Sbjct: 32  DQILLGDSIQMMAGLPAGSVDLVFADPPYNLQLGGELKRPDESLVDAVDDDWDRFDSFAT 91

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YDAFTRAWLLA RR LKPNGTL+VIGSYHNIFR+G M+Q+L FWILNDIVWRK+NPMPNF
Sbjct: 92  YDAFTRAWLLAARRALKPNGTLFVIGSYHNIFRVGAMMQDLGFWILNDIVWRKANPMPNF 151

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RGRRF NAHETLIWA+ S  AK YTFNY+ALKA NEDVQ+RSDWL P+C+G ERL++  G
Sbjct: 152 RGRRFTNAHETLIWAARSADAK-YTFNYEALKAGNEDVQVRSDWLFPLCTGQERLKDGAG 210

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +KLHPTQKPEALL+R+L+S+TKPGD++LDPFFGSGT+GAVAK+LRRSFIGIE ++ Y   
Sbjct: 211 KKLHPTQKPEALLARVLLSATKPGDVVLDPFFGSGTTGAVAKRLRRSFIGIEREEAYAQA 270

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  RI +V+PL    L      R  PRVAF++LVERGL+ PG  LT+A+G   A V ADG
Sbjct: 271 ARARIDAVEPLPEDALVAPPSAREAPRVAFSVLVERGLVTPGAELTDAKGRFRAVVRADG 330

Query: 321 T--LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           T  L  G  +GSIHRVGA   G+E CNGW FW+ E+ G  H I+TLR  +R E+
Sbjct: 331 TLALAGGQNVGSIHRVGALAQGAEACNGWTFWHVEEQGRRHPIDTLRARLRAEM 384


>gi|315498149|ref|YP_004086953.1| DNA methylase n-4/n-6 domain protein [Asticcacaulis excentricus CB
           48]
 gi|315416161|gb|ADU12802.1| DNA methylase N-4/N-6 domain protein [Asticcacaulis excentricus CB
           48]
          Length = 371

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 202/351 (57%), Positives = 260/351 (74%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I  G  + +L+ LP KSVDL+FADPPYNLQL G L+RPD+S VDAV D WD+F+SFEA
Sbjct: 19  DTIHVGECVDILKSLPDKSVDLVFADPPYNLQLGGDLHRPDNSKVDAVDDEWDQFASFEA 78

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR W+  C+RVLK +G +WVIGSYHN+FR+G  LQ+L FW++ND++WRK+NPMPNF
Sbjct: 79  YDRFTREWMRECQRVLKDDGAIWVIGSYHNVFRLGVALQDLGFWVMNDVIWRKANPMPNF 138

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWA+ +   K YTFNYDALKA NED QMRSDW IP+C+G ERL+++DG
Sbjct: 139 KGTRFTNAHETLIWATKAKGQKRYTFNYDALKAFNEDTQMRSDWAIPLCTGEERLKDEDG 198

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K+HPTQKPE+LL R+L++ +KPG ++LDPFFG+GT+GA AK+L R FIGIE  + Y   
Sbjct: 199 NKVHPTQKPESLLYRVLLACSKPGHVVLDPFFGTGTTGAAAKRLGRHFIGIERDETYAKH 258

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A +RIA VQ     +L  +  K+ EPRV F  LVE GL+QPG  L   +G  +A V ADG
Sbjct: 259 ARERIARVQRANESDLATMGSKKAEPRVPFGALVEAGLLQPGDTLYCPKGQRTARVRADG 318

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           +L+ G   GSIH+VGA +  + +CNGW FW F+       I+ LR  +R++
Sbjct: 319 SLVHGELTGSIHKVGAMLEQAPSCNGWTFWRFKTDAGFKPIDDLRARIRQQ 369


>gi|254471927|ref|ZP_05085328.1| modification methylase SmeIP [Pseudovibrio sp. JE062]
 gi|211959129|gb|EEA94328.1| modification methylase SmeIP [Pseudovibrio sp. JE062]
          Length = 365

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 215/364 (59%), Positives = 277/364 (76%), Gaps = 1/364 (0%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
           +  + ++  EW D IIKG+ +  L KLP  SVD++FADPPYNLQL G L+RPDHS VDA 
Sbjct: 1   MTPHTSTKPEWLDTIIKGDCVEALNKLPDNSVDVVFADPPYNLQLGGDLHRPDHSKVDAC 60

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
            D WD+FSSF+AYD FTRAWL A RRVLKPNG++WVIGSYHNIFR+G ++Q+L FWI ND
Sbjct: 61  DDHWDQFSSFKAYDEFTRAWLTAVRRVLKPNGSIWVIGSYHNIFRVGAVMQDLGFWINND 120

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
           +VW K+NPMPNFRG+RF NAHETLIWA PS ++K  TFNYDA+K  N+D+QMRSDW++PI
Sbjct: 121 VVWLKTNPMPNFRGKRFTNAHETLIWACPSQESKP-TFNYDAMKTFNDDLQMRSDWVLPI 179

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
           C+G ERL++ +G+K+HPTQKPE+LL R+L+S++  GD+ILDPFFG+GT+GAVAKKL R F
Sbjct: 180 CTGHERLKDDNGDKVHPTQKPESLLYRVLLSTSNQGDVILDPFFGTGTTGAVAKKLGRHF 239

Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNA 308
           +G E +  YI  A++RI  V P  +  L +  GKR  PRV F  L+E GL+ PG  LT+A
Sbjct: 240 VGCEREDAYIKAASERIDRVTPANDDFLAMTQGKRALPRVPFGNLLETGLLTPGAELTDA 299

Query: 309 QGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
           +G   ATV ADG+LI G   GSIH+VGA V G + CNGW FW+ ++   L  ++ LR +V
Sbjct: 300 RGRFKATVRADGSLICGEHSGSIHKVGALVQGQQACNGWTFWHVKRGKALEPVDALRQVV 359

Query: 369 RKEL 372
           R ++
Sbjct: 360 RSQM 363


>gi|295687797|ref|YP_003591490.1| DNA methylase N-4/N-6 domain-containing protein [Caulobacter segnis
           ATCC 21756]
 gi|295429700|gb|ADG08872.1| DNA methylase N-4/N-6 domain protein [Caulobacter segnis ATCC
           21756]
          Length = 358

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 214/352 (60%), Positives = 258/352 (73%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G+ I  +  LP KSVDLIFADPPYNLQL G L RPD+S VDAV D WD+F SF AY
Sbjct: 7   TIILGDCIEQMNALPEKSVDLIFADPPYNLQLGGDLLRPDNSKVDAVDDHWDQFESFAAY 66

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTR WL A RRVLK +G +WVIGSYHNIFR+G  +Q+L FWILNDIVWRKSNPMPNF+
Sbjct: 67  DKFTREWLKAARRVLKDDGAIWVIGSYHNIFRVGVAVQDLGFWILNDIVWRKSNPMPNFK 126

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G RF NAHETLIWAS S  AK YTFNYDALK AN++VQMRSDW IP+C+G ER++  DG+
Sbjct: 127 GTRFANAHETLIWASKSQNAKRYTFNYDALKMANDEVQMRSDWTIPLCTGEERIKGADGQ 186

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HPTQKPEALL R+++S+TKPGD+ILDPFFG GT+GA AK+L R FIGIE + +Y+  A
Sbjct: 187 KAHPTQKPEALLYRVILSTTKPGDVILDPFFGVGTTGAAAKRLGRKFIGIEREAEYLGHA 246

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
            +RIA V P+   +L V+  KR EPRV F  +VE GL+ PG  L  A+G   A V  DG+
Sbjct: 247 KERIAKVVPINPHDLEVMGSKRAEPRVPFGTIVEAGLLSPGDTLYCAKGERVAKVRPDGS 306

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           +  G   GSIH++GA V  +  CNGW +W+F+    L  I+ LR  VR  + 
Sbjct: 307 ITVGDLSGSIHKIGALVQSAPACNGWTYWHFKTDAGLAPIDVLRAQVRAGMN 358


>gi|254436719|ref|ZP_05050213.1| DNA methylase domain protein [Octadecabacter antarcticus 307]
 gi|198252165|gb|EDY76479.1| DNA methylase domain protein [Octadecabacter antarcticus 307]
          Length = 373

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 204/352 (57%), Positives = 262/352 (74%), Gaps = 1/352 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I+ G+ I V+  LP  SVDLIFADPPYNLQL G L+RPD+S VDAV + WD+F+SF+ 
Sbjct: 20  NTILDGDCIEVMNSLPEGSVDLIFADPPYNLQLKGDLHRPDNSKVDAVDNDWDQFASFKV 79

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FT AWL A RR+LK +G +WVIGSYHN+FR+GT LQN  FWILND+VWRKSNPMPNF
Sbjct: 80  YDDFTHAWLKAARRILKKDGAIWVIGSYHNVFRMGTELQNQGFWILNDVVWRKSNPMPNF 139

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+R  NAHETLIWAS S  +K  TFNY+ALKA NE +QMRSDW++PIC+G ERL+N  G
Sbjct: 140 RGKRLTNAHETLIWASKSETSKP-TFNYEALKALNEGIQMRSDWVLPICTGHERLKNDQG 198

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPE+LL R+L+ +T PGD++LDPFFG+GT+GAVAK L R +IGIE + +Y  +
Sbjct: 199 DKAHPTQKPESLLHRVLLGTTNPGDVVLDPFFGTGTTGAVAKMLGRDYIGIEREAEYRAV 258

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A +R+A ++   +  L V   KR EPRV F  +VERG+++PG+ L +  G   A V ADG
Sbjct: 259 AARRLAKIRKFDSEALEVTQSKRAEPRVPFGQVVERGMLRPGEELWSMNGRHKAKVRADG 318

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           TLI     GSIH+VGA    + +CNGW +W+F + G+   I+ LR  +R E+
Sbjct: 319 TLIGADAKGSIHQVGAACENAPSCNGWTYWHFRRDGKKVPIDLLRQQIRSEM 370


>gi|39934101|ref|NP_946377.1| DNA methylase N-4/N-6 [Rhodopseudomonas palustris CGA009]
 gi|192289628|ref|YP_001990233.1| DNA methylase N-4/N-6 domain protein [Rhodopseudomonas palustris
           TIE-1]
 gi|39647949|emb|CAE26469.1| possible adenine DNA methyltransferase [Rhodopseudomonas palustris
           CGA009]
 gi|192283377|gb|ACE99757.1| DNA methylase N-4/N-6 domain protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 376

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 222/351 (63%), Positives = 275/351 (78%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +II G+ I+ +EKLP KSVDL+FADPPYNLQL G L RPD S VDAV D WDKF+SF AY
Sbjct: 24  RIIVGDCIAEMEKLPPKSVDLVFADPPYNLQLKGALKRPDESEVDAVDDDWDKFASFAAY 83

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTRAWLLA RR++KP+ TLWVIGSYHNIFR+GT++Q+L FW+LNDIVWRKSNPMPNFR
Sbjct: 84  DNFTRAWLLAARRIMKPSATLWVIGSYHNIFRVGTIMQDLGFWVLNDIVWRKSNPMPNFR 143

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           GRRF NAHET+IWA+    AKGYTFNYDALKAANEDVQ RSDWLIP+C+G ERL+ KDG+
Sbjct: 144 GRRFTNAHETMIWAARDENAKGYTFNYDALKAANEDVQARSDWLIPLCTGDERLKGKDGK 203

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+HPTQKPE LL+R+L+SS+KPGD+++DPF G+GT+GAVAK+LRR++IGIE  + Y + A
Sbjct: 204 KVHPTQKPEQLLARVLLSSSKPGDLVVDPFNGTGTTGAVAKRLRRNYIGIERDKTYAEAA 263

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
             RI S++PL +  L      R  PRVAF+ L+ERG+I PG  L +++    A V ADG 
Sbjct: 264 RARIDSIEPLPDDTLKPFLTARDAPRVAFSELIERGMISPGARLVDSKKRHGALVRADGA 323

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           ++ G ++GSIHR+GA   GSE CNGW FW+ E    L  I+ LR  +R  +
Sbjct: 324 IMLGDKVGSIHRIGAVAQGSEACNGWTFWHVETSKGLRLIDELRAEIRSTM 374


>gi|393012|gb|AAA18913.1| adenine methyltransferase [Caulobacter crescentus CB15]
          Length = 358

 Score =  465 bits (1196), Expect = e-129,   Method: Composition-based stats.
 Identities = 212/352 (60%), Positives = 257/352 (73%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G+ I  +  LP KSVDLIFADPPYNLQL G L RPD+S VDAV D WD+F SF AY
Sbjct: 7   TIIHGDCIEQMNALPEKSVDLIFADPPYNLQLGGDLLRPDNSKVDAVDDHWDQFESFAAY 66

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTR WL A RRVLK +G +WVIGSYHNIFR+G  +Q+L FWILNDIVWRKSNPMPNF+
Sbjct: 67  DKFTREWLKAARRVLKDDGAIWVIGSYHNIFRVGVAVQDLGFWILNDIVWRKSNPMPNFK 126

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G RF NAHETLIWAS S  AK YTFNYDALK AN++VQMRSDW IP+C+G ER++  DG+
Sbjct: 127 GTRFANAHETLIWASKSQNAKRYTFNYDALKMANDEVQMRSDWTIPLCTGEERIKGADGQ 186

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HPTQKPEALL R+++S+TKPGD+ILDPFFG GT+GA AK+L R FIGIE + + ++ A
Sbjct: 187 KAHPTQKPEALLYRVILSTTKPGDVILDPFFGVGTTGAAAKRLGRKFIGIEREAEDLEHA 246

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
             RIA V P+   +L V+  KR EPRV F  +VE GL+ PG  L  ++G   A V  DG+
Sbjct: 247 KARIAKVVPIAPEDLDVMGSKRAEPRVPFGTIVEAGLLSPGDTLYCSKGTHVAKVRPDGS 306

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           +  G   GSIH++GA V  +  CNGW +W+F+    L  I+ LR  VR  + 
Sbjct: 307 ITVGDLSGSIHKIGALVQSAPACNGWTYWHFKTDAGLAPIDVLRAQVRAGMN 358


>gi|323135965|ref|ZP_08071048.1| DNA methylase N-4/N-6 domain protein [Methylocystis sp. ATCC 49242]
 gi|322399056|gb|EFY01575.1| DNA methylase N-4/N-6 domain protein [Methylocystis sp. ATCC 49242]
          Length = 392

 Score =  464 bits (1194), Expect = e-129,   Method: Composition-based stats.
 Identities = 207/361 (57%), Positives = 263/361 (72%), Gaps = 1/361 (0%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
                  ++ I++G+ + ++  LP +SVDL+FADPPYNLQL  +L RPD SLVDAV D W
Sbjct: 27  PPRAMSARNAILQGDCVELMRGLPHESVDLVFADPPYNLQLASKLTRPDQSLVDAVDDDW 86

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           DKF+ F  YDAFTR WL A RRV+KP+ T++VIGSYHNIFR+G ++Q+L FWILNDIVWR
Sbjct: 87  DKFADFATYDAFTRDWLSAARRVMKPSATIFVIGSYHNIFRVGAIMQDLGFWILNDIVWR 146

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K+NPMPNFRGRRF NAHET+IWA+    AK YTFNY+ALKA NED QMRSDWL+PIC+G+
Sbjct: 147 KNNPMPNFRGRRFTNAHETMIWAARDASAKSYTFNYEALKAGNEDCQMRSDWLLPICTGA 206

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           ERL++ +G K HPTQKPE LL+R+++S++  GD++LDPFFGSGT+GAVAK+LRR F+G+E
Sbjct: 207 ERLKDAEGRKAHPTQKPETLLARVILSASNAGDLVLDPFFGSGTTGAVAKRLRRDFLGLE 266

Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNI 312
               Y   A  RIA ++PL    ++V   KR EPR+AF  LVE GLI PG  LT+ +   
Sbjct: 267 RDPVYAKAANARIAEIEPLPEHAVSVAPSKRAEPRIAFASLVESGLIAPGARLTDLKKRH 326

Query: 313 SATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELH-SINTLRILVRKE 371
            A V ADGTL     +GSIH+ GA   G   CNGW FW++EK   L   I+ LR  +R  
Sbjct: 327 VAMVRADGTLSLSGFIGSIHKTGALAQGLPACNGWTFWHYEKADGLVAPIDELRAQMRDH 386

Query: 372 L 372
           +
Sbjct: 387 M 387


>gi|87199857|ref|YP_497114.1| DNA methylase N-4/N-6 [Novosphingobium aromaticivorans DSM 12444]
 gi|87135538|gb|ABD26280.1| DNA methylase N-4/N-6 [Novosphingobium aromaticivorans DSM 12444]
          Length = 380

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 208/348 (59%), Positives = 269/348 (77%), Gaps = 2/348 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I++G+ I+ + KLP  S+D+IFADPPYNLQL G L RPD S VDAVT+ WDKFSSF A
Sbjct: 29  NQILRGDCIAEMRKLPDASIDMIFADPPYNLQLGGDLARPDGSHVDAVTNDWDKFSSFAA 88

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL+  RR+LKP+G++WVIGSYHNIFR+G +LQ+L FWILNDI+WRK+NPMPNF
Sbjct: 89  YDKFTREWLVEARRLLKPDGSIWVIGSYHNIFRVGALLQDLGFWILNDIIWRKANPMPNF 148

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWAS S K+K YTFNY A+K  N+++QMRSDW++PICSG ERL  ++G
Sbjct: 149 KGTRFTNAHETLIWASKSEKSK-YTFNYRAMKTLNDELQMRSDWVLPICSGPERL-RRNG 206

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K HPTQKPEALL R+++++T  GD++LDPFFG+GT+GAVAK+L R++IG E + DYI++
Sbjct: 207 TKAHPTQKPEALLYRVMLATTNKGDVVLDPFFGTGTTGAVAKRLGRNWIGCEREDDYIEV 266

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A +RI    PL    LT +  KR+ P+VAF  LVE G + PG  LT  +G  +A V ADG
Sbjct: 267 ANERIELALPLDESALTTMQSKRSAPKVAFGALVESGYLAPGTRLTAKKGRFNAVVRADG 326

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
           +L S  E+GSIH +GAK+ G+ +CNGW FW+ E  GE+  I+ LR L 
Sbjct: 327 SLQSEAEIGSIHGLGAKLQGAPSCNGWTFWHVEHEGEVKPIDALRQLY 374


>gi|254450082|ref|ZP_05063519.1| modification methylase [Octadecabacter antarcticus 238]
 gi|198264488|gb|EDY88758.1| modification methylase [Octadecabacter antarcticus 238]
          Length = 373

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 207/352 (58%), Positives = 263/352 (74%), Gaps = 1/352 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + II G+ I V+  LP  SVDLIFADPPYNLQL G L+RPD+S VDAV + WD+F SF+ 
Sbjct: 20  NSIIDGDCIEVMNSLPEGSVDLIFADPPYNLQLKGDLHRPDNSKVDAVDNDWDQFESFKV 79

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FT AWL A RR+LKP+G +WVIGSYHN+FR+GT LQN  FWILND+VWRKSNPMPNF
Sbjct: 80  YDDFTHAWLKAARRILKPDGAIWVIGSYHNVFRMGTELQNQGFWILNDVVWRKSNPMPNF 139

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+R  NAHETLIWAS + K+K  TFNY+ALKA NE +QMRSDW++PIC+G ERL+N  G
Sbjct: 140 RGKRLTNAHETLIWASKAEKSKP-TFNYEALKALNEGIQMRSDWVLPICTGHERLKNDQG 198

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPE+LL R+L+ +T PGD++LDPFFG+GT+GAVAK L R +IGIE + +Y  +
Sbjct: 199 DKAHPTQKPESLLHRVLLGTTNPGDVVLDPFFGTGTTGAVAKMLGRDYIGIEREAEYRAV 258

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KR+A ++   +  L V   KR EPRV F  +VERG+++PG+ L +  G   A V ADG
Sbjct: 259 AEKRLAKIRKFDSEALEVTQSKRAEPRVPFGQVVERGMLRPGEELWSMNGRHKAKVRADG 318

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           TLI     GSIH+VGA    + +CNGW +W+F + G+   I+ LR  +R E+
Sbjct: 319 TLIGADAKGSIHQVGAACEKAPSCNGWTYWHFRRDGKTVPIDLLRQQIRSEM 370


>gi|163796460|ref|ZP_02190420.1| DNA methylase N-4/N-6 [alpha proteobacterium BAL199]
 gi|159178310|gb|EDP62854.1| DNA methylase N-4/N-6 [alpha proteobacterium BAL199]
          Length = 370

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 204/349 (58%), Positives = 265/349 (75%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I+ G+ I  L  LP +SVDLIFADPPYNLQL G+L RP+++ VD V D+WD+F  FEAY
Sbjct: 11  RILTGDCIEELRSLPDRSVDLIFADPPYNLQLGGELLRPNNTRVDGVDDAWDRFGGFEAY 70

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F RAWL  CRRVLK  GTLWVIGSYHNIFR+G ++Q+L FW+LND++WRK+NPMPNFR
Sbjct: 71  DKFCRAWLGECRRVLKDTGTLWVIGSYHNIFRVGAIVQDLGFWMLNDVIWRKANPMPNFR 130

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G+RF NAHETLIWA+ S  ++ YTFNYDA+KA N+D QMRSDW +P+C+G+ERL+ +DG 
Sbjct: 131 GKRFTNAHETLIWAARSEDSRRYTFNYDAMKALNDDQQMRSDWFLPLCTGAERLKAEDGS 190

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HPTQKPE+LL+R+L+++++PGDI+LDPFFG+GT+GAVAK+L R +IGIE    Y  IA
Sbjct: 191 KAHPTQKPESLLARVLLAASRPGDIVLDPFFGTGTTGAVAKRLGRRWIGIERDPGYAAIA 250

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
           +KRIA V+ + +     L  +R +PRV F  LVE GLI+PG++L +++    A V ADG 
Sbjct: 251 SKRIAEVEAVDDPMALALANRREQPRVPFGRLVEEGLIRPGEVLFDSRRRWFAKVRADGH 310

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRK 370
           LIS +  GSIH VGA V G+  CNGW FW+ E+ G    I+  R  +R 
Sbjct: 311 LISESHKGSIHSVGAAVQGAPACNGWTFWHAERKGMPLPIDVFRQQIRA 359


>gi|83594540|ref|YP_428292.1| DNA methylase N-4/N-6 [Rhodospirillum rubrum ATCC 11170]
 gi|83577454|gb|ABC24005.1| DNA methylase N-4/N-6 [Rhodospirillum rubrum ATCC 11170]
          Length = 367

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 202/360 (56%), Positives = 269/360 (74%), Gaps = 5/360 (1%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            ++I +G+SI V+  LP+ S+D+IFADPPYN+ L G+L RPD+S VD V D WD+F S  
Sbjct: 7   TNRIYQGDSIEVMRSLPSASIDMIFADPPYNMMLGGELLRPDNSRVDGVDDEWDRFESQR 66

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AY  FTR+WL   RR+LK NGT+WVIGSYHNI+R+G  LQ+L FW LND+VWRK+NPMPN
Sbjct: 67  AYAEFTRSWLREARRLLKDNGTIWVIGSYHNIYRVGAELQDLGFWTLNDVVWRKANPMPN 126

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           F+G RF NAHETL+W + S +A+ YTFNY+A+K+ NE +QMRSDW +P+C+G ERL+ +D
Sbjct: 127 FKGTRFTNAHETLLWCAKSAEAR-YTFNYEAMKSLNEGLQMRSDWTLPLCNGKERLKAED 185

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K+HPTQKPE+LL R+++SST PGDIILDPFFG+GT+GAVAK L R +IG+E  + YI 
Sbjct: 186 GKKVHPTQKPESLLYRVILSSTHPGDIILDPFFGTGTTGAVAKLLGRQWIGLERDEAYIA 245

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A +RIA V+P+ ++ L +   K++EPR+ F  +VERGL+ PG +L ++Q   +A V AD
Sbjct: 246 AARQRIAQVEPIKDLRLLITPSKKSEPRIPFGTVVERGLLAPGSLLCDSQRRWTAKVRAD 305

Query: 320 GTLI----SGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYNC 375
           GTL+     G   GSIH+VGA V G+  CNGW FW+ ++ G    I+ LR  VR EL  C
Sbjct: 306 GTLVATSSHGDHRGSIHQVGAAVQGAPACNGWTFWHIDRPGGAVPIDVLRQQVRAELEAC 365


>gi|307941627|ref|ZP_07656982.1| modification methylase SmeI [Roseibium sp. TrichSKD4]
 gi|307775235|gb|EFO34441.1| modification methylase SmeI [Roseibium sp. TrichSKD4]
          Length = 372

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 211/365 (57%), Positives = 276/365 (75%), Gaps = 1/365 (0%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           ++  N    W + I +G+ +S LE+LP+KSVDL+FADPPYNLQL G L RPD S VDA  
Sbjct: 9   SQGSNPEPSWLNTIHRGDCVSALERLPSKSVDLVFADPPYNLQLGGDLMRPDDSKVDACD 68

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
           D WD+F+SFEAYDAFTRAWLLA RRV+KP+G+L+VIGSYHNIFR+G +LQ+L FWI+NDI
Sbjct: 69  DHWDQFASFEAYDAFTRAWLLAVRRVMKPDGSLYVIGSYHNIFRVGAILQDLGFWIMNDI 128

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
           +W KSNPMPNFRG+RF NAHET+IWA+ S  AK  TFNYDALK  N+D+QMRSDW +P+C
Sbjct: 129 IWLKSNPMPNFRGKRFTNAHETIIWATKSKDAKP-TFNYDALKTFNDDLQMRSDWQLPLC 187

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           +G ERL+++ G+K+HPTQKPEALL R+L +S+ PGD++LDPFFG+GT+GAVAKKL R+++
Sbjct: 188 TGGERLKDEAGQKVHPTQKPEALLYRVLTASSTPGDVVLDPFFGTGTTGAVAKKLGRNYV 247

Query: 250 GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQ 309
           G+E ++DYI  A  R+A++ P     L +  GKR E R+ F  L+E GL++PG  L+ A+
Sbjct: 248 GVEREEDYIRHAEARLAAITPGDAETLEMQKGKRAEKRIPFGSLLETGLMKPGTELSCAK 307

Query: 310 GNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVR 369
           G   A V ADG+L  G   GSIH+VGA V G ++CNGW FW+         I++LR  +R
Sbjct: 308 GQHLAVVRADGSLKCGNHTGSIHKVGALVQGQQSCNGWTFWHVGSGKTRTPIDSLRQDLR 367

Query: 370 KELYN 374
             L +
Sbjct: 368 SRLQS 372


>gi|316932563|ref|YP_004107545.1| DNA methylase N-4/N-6 domain-containing protein [Rhodopseudomonas
           palustris DX-1]
 gi|315600277|gb|ADU42812.1| DNA methylase N-4/N-6 domain protein [Rhodopseudomonas palustris
           DX-1]
          Length = 376

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 222/371 (59%), Positives = 281/371 (75%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
           S+  + A        +E + +II G+ I+ +EKLPAKSVDL+FADPPYNLQL G L RPD
Sbjct: 4   SRSGASARAPRTQFEYEPESQIIVGDCIAEMEKLPAKSVDLVFADPPYNLQLKGALKRPD 63

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
            S VDAV D WDKF+SF AYD FTRAWLLA RR++KP+ TLWVIGSYHNIFR+G ++Q+L
Sbjct: 64  ESEVDAVDDDWDKFASFAAYDNFTRAWLLAARRIMKPSATLWVIGSYHNIFRVGAIMQDL 123

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
            FW+LNDIVWRKSNPMPNFRGRRF NAHET+IWA+    AKGYTFNYDALKAANEDVQ R
Sbjct: 124 GFWLLNDIVWRKSNPMPNFRGRRFTNAHETMIWAARDENAKGYTFNYDALKAANEDVQAR 183

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
           SDWLIP+C+G ERL+ KDG+K+HPTQKPE LL+R+L+SS++PGD+++DPF G+GT+GAVA
Sbjct: 184 SDWLIPLCTGEERLKGKDGKKVHPTQKPEQLLARVLLSSSRPGDLVVDPFNGTGTTGAVA 243

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP 301
           K+LRR++IG E  + Y + A  RI +++PL +  L      R  PRVAF+ L+ERG+I P
Sbjct: 244 KRLRRNYIGFERDRTYAEAARARIDAIEPLPDDTLKPFLTARDAPRVAFSELIERGMISP 303

Query: 302 GQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSI 361
           G  L +++    A V ADG ++ G ++GSIHR+GA   GSE CNGW FW+ E    L  I
Sbjct: 304 GARLVDSKKRHGALVRADGAIMLGDKVGSIHRIGAMAQGSEACNGWTFWHVETSKGLRLI 363

Query: 362 NTLRILVRKEL 372
           + LR  +R  +
Sbjct: 364 DELRTEIRNTM 374


>gi|329850291|ref|ZP_08265136.1| modification methylase CcrMI [Asticcacaulis biprosthecum C19]
 gi|328840606|gb|EGF90177.1| modification methylase CcrMI [Asticcacaulis biprosthecum C19]
          Length = 374

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 201/353 (56%), Positives = 258/353 (73%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I  G  I VL+ LP  SVDL+FADPPYNLQL G L RPD+S VDAV D WD+F+SFE 
Sbjct: 22  DTIHIGECIEVLKSLPDASVDLVFADPPYNLQLGGDLLRPDNSKVDAVDDEWDQFASFEV 81

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR W+  CRRVLK +G +WVIGSYHNIFR+G  +Q+L FW++ND++WRK+NPMPNF
Sbjct: 82  YDKFTREWMRECRRVLKDDGAMWVIGSYHNIFRLGVAMQDLGFWVMNDVIWRKANPMPNF 141

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWA+ +   K YTFNYDALKA NED QMRSDWLI +C+G ERL++++G
Sbjct: 142 KGTRFTNAHETLIWATKAKGQKRYTFNYDALKAFNEDTQMRSDWLISLCTGDERLKDENG 201

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K HPTQKPE+LL R+L++ +KPG ++LDPFFG+GT+GA AK+L R FIGIE  + Y   
Sbjct: 202 NKAHPTQKPESLLYRVLLACSKPGQVVLDPFFGTGTTGAAAKRLGRHFIGIERDETYARH 261

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A +RIA V P     L V+  K+ EPR+ F  LVE GL+QPG +L   +G+ +A + ADG
Sbjct: 262 ARERIAKVIPTTAENLNVVGSKKAEPRIPFGSLVEAGLLQPGDMLYTPKGDKTAKIRADG 321

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           +L+ G   GSIH++GA +  S  CNGW +W F+    L  I+ LR  +R ++ 
Sbjct: 322 SLVYGDLSGSIHKMGAMMEQSPACNGWTYWRFKTDAGLKPIDDLRARIRGDMN 374


>gi|209886095|ref|YP_002289952.1| modification methylase CcrMI [Oligotropha carboxidovorans OM5]
 gi|209874291|gb|ACI94087.1| modification methylase CcrMI [Oligotropha carboxidovorans OM5]
          Length = 374

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 224/371 (60%), Positives = 278/371 (74%), Gaps = 1/371 (0%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           MS++ + A     N       +I+ G+ ++ + KLPA SVDL+FADPPYNLQL G+L RP
Sbjct: 1   MSRRGASAKAPRTNFETSPSARIVIGDCVAEMTKLPANSVDLVFADPPYNLQLKGELKRP 60

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           D S VDAV D WDKFSSF AYD FTRAWLLACRR++KP  T+WVIGSYHNIFR+G ++Q+
Sbjct: 61  DESHVDAVNDDWDKFSSFAAYDDFTRAWLLACRRIMKPTATIWVIGSYHNIFRVGAIMQD 120

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           L FWILNDIVWRKSNPMPNFRGRRF NAHET+IWA+     K YTFNYDALKAANEDVQ 
Sbjct: 121 LGFWILNDIVWRKSNPMPNFRGRRFTNAHETMIWAARDEATK-YTFNYDALKAANEDVQA 179

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           RSDWLIP+C+G ERL+ KDG K+HPTQKPE LL+R+L+SS+KPGD+++DPF G+GT+GAV
Sbjct: 180 RSDWLIPLCTGEERLKGKDGRKIHPTQKPEGLLARVLLSSSKPGDLVIDPFNGTGTTGAV 239

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           AK+L RS+IG E  + Y + A KRIA+V+PL    L      R  PRV F  L+ERG+I 
Sbjct: 240 AKRLGRSYIGFERDRTYAEAAEKRIAAVEPLPQATLAPFMTAREAPRVPFAELIERGMIS 299

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
           PG  L +++   +A V ADG ++ G ++GSIHR+GA   GSE CNGW+FW+ E    L  
Sbjct: 300 PGAKLVDSKKKHAALVRADGAIMLGDKVGSIHRMGALAQGSEACNGWSFWHVETKKGLRL 359

Query: 361 INTLRILVRKE 371
           I+ LR  VR+E
Sbjct: 360 IDELRAEVRRE 370


>gi|89052883|ref|YP_508334.1| DNA methylase N-4/N-6 [Jannaschia sp. CCS1]
 gi|88862432|gb|ABD53309.1| DNA methylase N-4/N-6 [Jannaschia sp. CCS1]
          Length = 367

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 212/368 (57%), Positives = 276/368 (75%), Gaps = 3/368 (0%)

Query: 7   LAINENQNSIFEW-KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV 65
           + IN  + +      + I+ G+ I V+  LP  SVDLIFADPPYNLQL G L+RP++SLV
Sbjct: 1   MTINTKEKAAQALPLNTILAGDCIDVMNALPEASVDLIFADPPYNLQLKGDLHRPNNSLV 60

Query: 66  DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
           DAV + WD+F SF+AYDAFT+AWL A +R+LKP G +WVIGSYHNIFR+G  LQ   +WI
Sbjct: 61  DAVDNDWDQFDSFKAYDAFTKAWLAAAKRLLKPGGAIWVIGSYHNIFRVGAELQTQGYWI 120

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
           LND+VWRKSNPMPNFRG+RF NAHET+IWAS    AK YTFNY+ALK  NE +QMRSDW+
Sbjct: 121 LNDVVWRKSNPMPNFRGKRFTNAHETMIWASKDEGAK-YTFNYEALKELNEGIQMRSDWV 179

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +PIC+GSERL++  G+K HPTQKPE+LL R+LV ST PGD++LDPFFG+GT+GAVAK L 
Sbjct: 180 LPICNGSERLKDDKGDKAHPTQKPESLLHRVLVGSTNPGDVVLDPFFGTGTTGAVAKALG 239

Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL 305
           R +IGIE ++ Y  +A KR++ V+      + V T KR EPRV F  LVERG+++PG++L
Sbjct: 240 RDYIGIEREEAYRVVAEKRLSRVRKFDKTSIAVTTPKRAEPRVPFGQLVERGMLRPGEML 299

Query: 306 TNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLR 365
            + +G   A V ADGTLI+    GSIH+VGA++ G+ +CNGW +W F++ G+  SI+ LR
Sbjct: 300 FSPRGQ-QAKVRADGTLIADDVKGSIHKVGAELEGAPSCNGWTYWNFKRDGKNVSIDVLR 358

Query: 366 ILVRKELY 373
             +R E+ 
Sbjct: 359 QQIRAEMA 366


>gi|254293434|ref|YP_003059457.1| DNA methylase N-4/N-6 domain protein [Hirschia baltica ATCC 49814]
 gi|254041965|gb|ACT58760.1| DNA methylase N-4/N-6 domain protein [Hirschia baltica ATCC 49814]
          Length = 363

 Score =  461 bits (1187), Expect = e-128,   Method: Composition-based stats.
 Identities = 208/353 (58%), Positives = 267/353 (75%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           KD I+ G+ I ++  LP KSVDL+FADPPYNLQL G L RPD+S VDAV + WD+F+SFE
Sbjct: 8   KDHILIGDCIELMNSLPEKSVDLVFADPPYNLQLGGDLVRPDNSKVDAVDNEWDQFASFE 67

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YD FT+ WL A RRVLK +G +WVIGSYHNIFR+G+ LQ+L FWILND++W KSNPMPN
Sbjct: 68  TYDNFTKDWLTAARRVLKDDGAIWVIGSYHNIFRVGSQLQDLGFWILNDVIWNKSNPMPN 127

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           F+G RF NAHETLIWA+ S + K YTFNYDALK AN+DVQMRSDW IPICSG ERL+N +
Sbjct: 128 FKGTRFTNAHETLIWATKSKEQKKYTFNYDALKTANDDVQMRSDWTIPICSGGERLKNDE 187

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKPEALL R+++++TK GD +LDPFFG+GT+GAVAK L R FIG+E ++DY  
Sbjct: 188 GKKAHPTQKPEALLHRVIMATTKQGDTVLDPFFGTGTTGAVAKMLGRHFIGLEREEDYAA 247

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A  RI +V+ + +++L V   KR+ PRV F  L+ERG ++PG  L   +    A V AD
Sbjct: 248 VAQARIDNVRKVDDVDLQVTQPKRSAPRVPFGALIERGFLRPGDRLYCPKQQHIARVRAD 307

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           G+L +G + GSIHR+GA+V  + +CNGW FW+++    L  I+ LR   R E+
Sbjct: 308 GSLANGDDTGSIHRLGAQVQNAPSCNGWTFWHYKSDQGLAPIDLLRRKFRTEM 360


>gi|326387696|ref|ZP_08209302.1| DNA methylase N-4/N-6 [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207742|gb|EGD58553.1| DNA methylase N-4/N-6 [Novosphingobium nitrogenifigens DSM 19370]
          Length = 388

 Score =  461 bits (1186), Expect = e-128,   Method: Composition-based stats.
 Identities = 204/348 (58%), Positives = 270/348 (77%), Gaps = 1/348 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I++G+ I  +  LP  S+D+IFADPPYNLQL G L RPD S VDAVT+ WDKF SF A
Sbjct: 36  NQILRGDCIEQMRALPTASIDMIFADPPYNLQLGGDLARPDGSHVDAVTNDWDKFDSFAA 95

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YDAFTR WL   RR+LKP+G++WVIGSYHNIFR+G +LQ++ FWILNDIVWRK+NPMPNF
Sbjct: 96  YDAFTREWLAEARRLLKPDGSIWVIGSYHNIFRVGAILQDMGFWILNDIVWRKANPMPNF 155

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWAS S K+K YTFNY A+K  N+++QMRSDW++PICSG ERLRNK G
Sbjct: 156 KGTRFTNAHETLIWASRSEKSK-YTFNYRAMKTLNDELQMRSDWVLPICSGQERLRNKRG 214

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K HPTQKPE+LL R+++++T PGD++LDPFFG+GT+GAVAK+L R +IG E ++ YI++
Sbjct: 215 AKAHPTQKPESLLYRVMLATTNPGDVVLDPFFGTGTTGAVAKRLGRHWIGCEREEGYIEV 274

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A +RI    PL    L  +  ++++PRVAF  LVE G I+PG +L++ +G    TV ADG
Sbjct: 275 AEERIEMALPLDETALKTMQSRKSQPRVAFGQLVESGWIRPGAVLSDRKGRYCVTVRADG 334

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
           ++++G + GSIH +GAK+ G+ +CNGW FW+ E  G++  I+ LR L 
Sbjct: 335 SIMAGDDSGSIHGIGAKLQGAPSCNGWTFWHIEHEGQVKQIDALRQLY 382


>gi|144899369|emb|CAM76233.1| DNA methylase N-4/N-6 [Magnetospirillum gryphiswaldense MSR-1]
          Length = 357

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 215/354 (60%), Positives = 273/354 (77%), Gaps = 3/354 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I++G+ I+ +E LPAKSVDL+FADPPYNLQL G+L RP++S VD V D WD+F SF  
Sbjct: 6   DTILQGDCIAQMEALPAKSVDLVFADPPYNLQLGGELLRPNNSRVDGVDDDWDRFDSFRD 65

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL A RRVLK +G LWVIGSYHNIFR+G  LQ+L FW+LNDIVWRKSNPMPNF
Sbjct: 66  YDDFTRRWLAAARRVLKDDGALWVIGSYHNIFRVGASLQDLGFWMLNDIVWRKSNPMPNF 125

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG RF NAHETLIW + S +++ YTFNY+A+KA N+D+QMRSDW IP+C+GSERL+N DG
Sbjct: 126 RGTRFTNAHETLIWCAKSAESR-YTFNYEAMKALNDDLQMRSDWTIPLCTGSERLKN-DG 183

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K+HPTQKPE LL R+L+++TKPGD++LDPFFG+GT+GAVAKKL+R FIG E   DYI  
Sbjct: 184 TKVHPTQKPEMLLYRVLMATTKPGDVVLDPFFGTGTTGAVAKKLKRHFIGCERDPDYIKA 243

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILT-NAQGNISATVCAD 319
           A +RI+ V+P+  + L     K++EPRV F  +VERGL++ G +L  N + +++A V AD
Sbjct: 244 AQERISKVRPVSELSLLSTPSKKSEPRVPFGTVVERGLLEVGTVLYGNGKDSLTAKVRAD 303

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           GTLIS    GSIH+VGA V  +  CNGW FW+ ++  EL  I+ LR  +R EL+
Sbjct: 304 GTLISADHRGSIHKVGALVQNAPACNGWTFWHLKQGDELVPIDVLRQKIRAELH 357


>gi|84502791|ref|ZP_01000904.1| modification methylase [Oceanicola batsensis HTCC2597]
 gi|84388774|gb|EAQ01644.1| modification methylase [Oceanicola batsensis HTCC2597]
          Length = 363

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 212/353 (60%), Positives = 266/353 (75%), Gaps = 2/353 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I+ G+ I  +  LP  SVDLIFADPPYNLQL GQL+RPD+S VDAV D WD+F SF A
Sbjct: 13  NTILAGDCIEQMNALPEASVDLIFADPPYNLQLKGQLHRPDNSEVDAVDDHWDQFDSFAA 72

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL A RR+LKP+G +WVIGSYHNIFR+G  LQ+  +WILND+VWRKSNPMPNF
Sbjct: 73  YDRFTRDWLAAARRLLKPDGAIWVIGSYHNIFRVGAALQDAGYWILNDVVWRKSNPMPNF 132

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG+RF NAHET+IWAS S  AK YTFNY+ALK+ NE +QMRSDW++PIC+G ERL++  G
Sbjct: 133 RGKRFTNAHETMIWASKSEGAK-YTFNYEALKSLNEGIQMRSDWVLPICNGGERLKDAKG 191

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPEALL R+LV ST PGD++LDPFFG+GT+GAVAK L R +IGIE ++ Y  +
Sbjct: 192 DKAHPTQKPEALLHRVLVGSTNPGDVVLDPFFGTGTTGAVAKMLGREYIGIEREEAYRKV 251

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  RI+ V+      L V T KR EPRV F  LVERG+++PG+ L N +G  +A V ADG
Sbjct: 252 AEARISKVRKFDRDALIVSTSKRAEPRVPFGQLVERGMLRPGETLVNTRGQ-AARVRADG 310

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           TL +    GSIH+VGA + G+ +CNGW +W+F K G+   I+ +R  +R E+ 
Sbjct: 311 TLATDGFNGSIHQVGAHIEGAPSCNGWTYWHFLKDGKTIPIDLMRQQIRAEMN 363


>gi|302383800|ref|YP_003819623.1| DNA methylase N-4/N-6 domain protein [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194428|gb|ADL02000.1| DNA methylase N-4/N-6 domain protein [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 359

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 205/354 (57%), Positives = 258/354 (72%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            D I +G+ + +L  LP +SVD++FADPPYNLQL G L RPD+S VDAV D WDKF SF 
Sbjct: 6   TDIIHRGDCLEILRGLPDRSVDMVFADPPYNLQLGGDLLRPDNSKVDAVDDDWDKFDSFA 65

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYDAF R WL  CRRVLK  G+LWVIGSYHNIFR+GT +Q++ +W+LNDIVWRK+NPMPN
Sbjct: 66  AYDAFCRDWLKECRRVLKDEGSLWVIGSYHNIFRLGTAIQDIGYWVLNDIVWRKTNPMPN 125

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           F+G RF NAHETLIWA+ S + K YTFNYDALKA NED QMRSDW   +C+G ER++ +D
Sbjct: 126 FKGTRFTNAHETLIWAAKSREQKRYTFNYDALKAFNEDTQMRSDWTFALCTGEERIKGED 185

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKPEALL R+++++T+PGD+ILDPFFG+GT+GA AK+L R +IGIE   +Y +
Sbjct: 186 GKKAHPTQKPEALLHRVILAATRPGDVILDPFFGTGTTGAAAKRLGRHYIGIERDPEYAN 245

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A KRI +V P    +L V   KR E +V F  LVE GL+ PG +L   +G   A V AD
Sbjct: 246 VAEKRIKAVLPARPEDLIVTGSKRAEVKVPFGALVEAGLLSPGDVLYCPKGEREARVRAD 305

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           G+L+SG   GSIH++GA    +  CNGW +W F     L SI+ LR  VR  + 
Sbjct: 306 GSLVSGAMSGSIHKLGALFENAPACNGWTYWRFRTDTGLRSIDALRAEVRAGMQ 359


>gi|114570743|ref|YP_757423.1| DNA methylase N-4/N-6 domain-containing protein [Maricaulis maris
           MCS10]
 gi|114341205|gb|ABI66485.1| DNA methylase N-4/N-6 domain protein [Maricaulis maris MCS10]
          Length = 359

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 197/354 (55%), Positives = 263/354 (74%), Gaps = 1/354 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+I++G  + V++ LP +SVDL+FADPPYNLQL G L+RPD+S V AV + WD+   F+ 
Sbjct: 7   DQILEGECVEVMKSLPDESVDLVFADPPYNLQLGGDLHRPDNSKVSAVDNDWDQIGGFDE 66

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FT  W+   RRVLKPNG +WVIGSYHNIFR+G +LQ+  FW+LNDI+WRKSNPMPNF
Sbjct: 67  YDLFTWNWMEEARRVLKPNGAIWVIGSYHNIFRVGGILQDAGFWVLNDIIWRKSNPMPNF 126

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWA+ +  A+  TFNY A+KA N+ VQMRSDW +PIC+G ERL+++DG
Sbjct: 127 KGTRFTNAHETLIWAAKTKDARP-TFNYAAMKALNDGVQMRSDWTLPICTGGERLKDEDG 185

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPE+LL R+L+S+T PGD++LDPFFG+GT+GA AK+L R +IGIE    Y+D+
Sbjct: 186 KKAHPTQKPESLLHRVLLSTTNPGDVVLDPFFGTGTTGAAAKRLGRHYIGIERDTAYLDV 245

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KR+A++    +  L V   KR +PR+ F  LVERG+++PG  L   +G  +A V ADG
Sbjct: 246 ARKRLAAITRGASDTLDVTQSKRAQPRIPFGALVERGMLKPGDTLYCPKGRNTARVRADG 305

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           TLI+GT  GSIH+VGA++  + +CNGW +W+      L  I+ +R  +R  L N
Sbjct: 306 TLIAGTSAGSIHQVGAQLQSAPSCNGWTYWHIRTKQGLAPIDVMRAEIRATLEN 359


>gi|158422077|ref|YP_001523369.1| putative adenine DNA methyltransferase [Azorhizobium caulinodans
           ORS 571]
 gi|158328966|dbj|BAF86451.1| putative adenine DNA methyltransferase [Azorhizobium caulinodans
           ORS 571]
          Length = 395

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 216/357 (60%), Positives = 272/357 (76%), Gaps = 4/357 (1%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            D+I+ G+ +  L  LP  SVD++FADPPYNLQL G+L RPD S VDAV D+WD+F SFE
Sbjct: 33  TDRILIGDCVEQLASLPPHSVDMVFADPPYNLQLQGELKRPDDSRVDAVDDAWDQFESFE 92

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYDAFTRAWLLA +RV+KPN T+WVIGSYHNIFR+G ++Q+L FWILND+VWRKSNPMPN
Sbjct: 93  AYDAFTRAWLLAVKRVMKPNATIWVIGSYHNIFRVGALMQDLGFWILNDVVWRKSNPMPN 152

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRGRRF NAHET+IWA+  P AKGY FNY+ALK  NEDVQ+RSDWL+PIC+G ERL++  
Sbjct: 153 FRGRRFTNAHETMIWAARDPGAKGYQFNYEALKGGNEDVQVRSDWLLPICTGGERLKDAQ 212

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G KLHPTQKPEALL+R+++S++KPGD++LDPF GSGTS AVAK+LRR F+G+E  + Y  
Sbjct: 213 GRKLHPTQKPEALLARVMLSASKPGDVVLDPFLGSGTSAAVAKRLRRHFVGVERDETYAA 272

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A  RI +++PL    L      R  PRVAF+ LV+ GL+ PG  LT+A+G++ A V AD
Sbjct: 273 AAAARIDAIEPLPEAALVAPPSAREAPRVAFSALVDSGLVTPGLELTDAKGHVRAVVRAD 332

Query: 320 GTLISGT----ELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           GT+         +GSIHR+GA   G+E CNGW FW+ E+ G  H I+ LR  +R E+
Sbjct: 333 GTIALVNAATLAVGSIHRMGALAQGAEACNGWTFWHVEQEGRRHPIDVLRARLRAEM 389


>gi|294012714|ref|YP_003546174.1| putative adenine-specific DNA-methyltransferase [Sphingobium
           japonicum UT26S]
 gi|292676044|dbj|BAI97562.1| putative adenine-specific DNA-methyltransferase [Sphingobium
           japonicum UT26S]
          Length = 371

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 201/348 (57%), Positives = 264/348 (75%), Gaps = 2/348 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D++++G+ I+ + KLP   +D+IFADPPYNLQL G L+RP+   VDAV + WDKF +  +
Sbjct: 20  DRLLRGDCIAEMAKLPDACIDMIFADPPYNLQLGGDLFRPEGGRVDAVDNDWDKFDTLGS 79

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FT+AWL   RR+LKPNGT+WVIGSYHNIFR+GT LQ+  FWILNDIVWRKSNPMPNF
Sbjct: 80  YDRFTKAWLREARRILKPNGTIWVIGSYHNIFRVGTALQDEGFWILNDIVWRKSNPMPNF 139

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWAS    AK YTFNY A+K  N+++QMRSDW++PIC G ERL  ++G
Sbjct: 140 KGTRFTNAHETLIWASQGEDAK-YTFNYKAMKTLNDELQMRSDWVLPICGGQERL-KRNG 197

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K HPTQKPEALL R+L++ T+PGD++LDPFFG+GT+GAVAK+L R +IGIE ++DYI++
Sbjct: 198 TKAHPTQKPEALLYRVLLACTRPGDVVLDPFFGTGTTGAVAKRLGRRWIGIEREEDYIEV 257

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A +RI +  PL    LT++   + +P+VAF  LVE G +QPG +LT+++    A V ADG
Sbjct: 258 ALERIEAALPLDESALTIMQSAKAQPKVAFGTLVETGYLQPGAVLTDSKRRWQAVVRADG 317

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
           +L  GT+ GSIH++GA + G+ +CNGW FW+ E  G L  I+ LR   
Sbjct: 318 SLSVGTDTGSIHKMGATLQGAPSCNGWTFWHCEVEGVLKPIDALRQTY 365


>gi|306842226|ref|ZP_07474890.1| Modification methylase HinfI [Brucella sp. BO2]
 gi|306287668|gb|EFM59112.1| Modification methylase HinfI [Brucella sp. BO2]
          Length = 338

 Score =  454 bits (1169), Expect = e-126,   Method: Composition-based stats.
 Identities = 230/333 (69%), Positives = 283/333 (84%)

Query: 41  DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG 100
           D+IFADPPYNLQL G L+RPD S+V AV D WD+F SF+AYDAFTRAWLLACRRVLKPNG
Sbjct: 2   DVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESFQAYDAFTRAWLLACRRVLKPNG 61

Query: 101 TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
           T+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMPNFRGRRFQNAHETLIWAS   K
Sbjct: 62  TIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMPNFRGRRFQNAHETLIWASRDQK 121

Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
            KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL++++G+K+HPTQKPEALL+RI+++S
Sbjct: 122 GKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDENGDKVHPTQKPEALLARIMMAS 181

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
           +KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YID AT RI +V+PLG  ELTV+T
Sbjct: 182 SKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYIDAATARINAVEPLGKAELTVMT 241

Query: 281 GKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSG 340
           GKR EPRVAF  ++E GL++PG +L + +   +A V ADGTL +  E GSIHR+GA+V G
Sbjct: 242 GKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRADGTLTANGEAGSIHRIGARVQG 301

Query: 341 SETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
            + CNGW FW+FE+ G L  I+ LR ++R+++ 
Sbjct: 302 FDACNGWTFWHFEENGVLKPIDALRKIIREQMA 334


>gi|85714254|ref|ZP_01045242.1| DNA methylase N-4/N-6 [Nitrobacter sp. Nb-311A]
 gi|85698701|gb|EAQ36570.1| DNA methylase N-4/N-6 [Nitrobacter sp. Nb-311A]
          Length = 376

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 220/352 (62%), Positives = 271/352 (76%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +II G+ ++ + KLPA S DLIFADPPYNLQL G+L RPD S VDAV   WDKFSSF AY
Sbjct: 23  RIIIGDCVAGMSKLPAGSADLIFADPPYNLQLKGELKRPDESHVDAVNSEWDKFSSFSAY 82

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTRAWLLACRRV+KP+ T+WVIGSYHNIFR+G M+Q+L FW+LNDIVWRK+NPMPNFR
Sbjct: 83  DDFTRAWLLACRRVMKPSATIWVIGSYHNIFRVGAMMQDLGFWVLNDIVWRKTNPMPNFR 142

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           GRRF NAHET+IWA+    AKGYTFNY+ALKAANEDVQ RSDWLIP+C+G+ERL+ KDG 
Sbjct: 143 GRRFTNAHETMIWAARDENAKGYTFNYEALKAANEDVQARSDWLIPLCTGNERLKGKDGR 202

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+HPTQKPE LL+R+L+SS+KPGD+++DPF G+GT+GAVAK+L RS+IG E  Q Y   A
Sbjct: 203 KIHPTQKPEGLLARVLLSSSKPGDLVIDPFNGTGTTGAVAKRLGRSYIGFERDQAYAAAA 262

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
            KRIA+V+PL    L      R  PRVAF+ L+ERG+I PG  L +A+    A V ADG 
Sbjct: 263 EKRIAAVEPLPEATLAPFMTAREAPRVAFSELIERGMISPGAKLVDAKKRHGALVRADGA 322

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           ++ G ++GSIHR+GA   G+  CNGW FW+ E    L  I+ LR  +R ++ 
Sbjct: 323 IMLGDKVGSIHRIGAVAQGASACNGWTFWHIETSKGLRLIDELRAEIRSQMA 374


>gi|94497422|ref|ZP_01303992.1| DNA methylase N-4/N-6 [Sphingomonas sp. SKA58]
 gi|94423053|gb|EAT08084.1| DNA methylase N-4/N-6 [Sphingomonas sp. SKA58]
          Length = 391

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 201/348 (57%), Positives = 264/348 (75%), Gaps = 2/348 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D +++G+ I+ +  LP K +D+IFADPPYNLQL G L+RP+ S VDAV + WDKF +  +
Sbjct: 40  DTLLRGDCIAQMAALPDKCIDMIFADPPYNLQLGGDLFRPEGSRVDAVDNDWDKFDTLGS 99

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FT+AWL   RR+LKPNGT+WVIGSYHNIFR+G+ LQ+  FWILNDI+WRK+NPMPNF
Sbjct: 100 YDRFTKAWLREARRILKPNGTIWVIGSYHNIFRVGSALQDEGFWILNDIIWRKANPMPNF 159

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWAS    AK YTFNY A+K  N+++QMRSDW++PIC G ERL  ++G
Sbjct: 160 KGTRFTNAHETLIWASQGEDAK-YTFNYKAMKTLNDELQMRSDWVLPICGGQERL-KRNG 217

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K HPTQKPE+LL R+L+S TKPGD++LDPFFG+GT+GAVAK+L R +IGIE ++DYI++
Sbjct: 218 TKAHPTQKPESLLYRVLLSCTKPGDVVLDPFFGTGTTGAVAKRLGRRWIGIEREEDYIEV 277

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A +RIA   PL    LT++   R++P+VAF  LVE G ++PG ILT+ +    A V ADG
Sbjct: 278 ALERIADALPLDESALTIMQSARSQPKVAFGTLVETGYLKPGAILTDTKRRWQAQVRADG 337

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
           +L  G + GSIH++GA + G+ +CNGW FW++E  G L  I+ LR   
Sbjct: 338 SLAVGADSGSIHKMGATLQGAPSCNGWTFWHYEAEGGLKPIDALRQTY 385


>gi|92118691|ref|YP_578420.1| DNA methylase N-4/N-6 [Nitrobacter hamburgensis X14]
 gi|91801585|gb|ABE63960.1| DNA methylase N-4/N-6 [Nitrobacter hamburgensis X14]
          Length = 376

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 215/352 (61%), Positives = 271/352 (76%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +II G+ ++ + KLP+ S DL+FADPPYNLQL G L RPD S VDAV D WDKFSSF AY
Sbjct: 23  RIIVGDCVAAMSKLPSGSADLVFADPPYNLQLKGDLKRPDESHVDAVNDDWDKFSSFAAY 82

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTRAWLLACRRV+KP  T+WVIGSYHNIFR+G ++Q+L FW+LNDIVWRK+NPMPNFR
Sbjct: 83  DDFTRAWLLACRRVMKPTATIWVIGSYHNIFRVGAIMQDLGFWVLNDIVWRKTNPMPNFR 142

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           GRRF NAHET+IWA+    AKGYTFNY+ALKA+NEDVQ RSDWLIP+C+G+ERL++KDG 
Sbjct: 143 GRRFTNAHETMIWAARDENAKGYTFNYEALKASNEDVQARSDWLIPLCTGNERLKDKDGR 202

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+HPTQKPE LL+R+L+SS++PGD+I+DPF G+GT+GAVAK+L R++IG E  Q Y   A
Sbjct: 203 KVHPTQKPEGLLARVLLSSSRPGDLIIDPFNGTGTTGAVAKRLGRNYIGFERDQTYAAAA 262

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
            KRIA+++PL    +      R  PRVAF+ L+ERG+I PG  L +A+    A V ADG 
Sbjct: 263 EKRIAAIEPLPEATIAPFMTAREAPRVAFSELIERGMISPGAKLVDAKKRHGALVRADGA 322

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           ++ G ++GSIHR+GA   G+  CNGW FW+ E    L  I+ LR  +R E+ 
Sbjct: 323 IMLGDKVGSIHRIGAVAQGAGACNGWTFWHIETSKGLRLIDELRAEIRSEMA 374


>gi|209966434|ref|YP_002299349.1| modification methylase, putative [Rhodospirillum centenum SW]
 gi|209959900|gb|ACJ00537.1| modification methylase, putative [Rhodospirillum centenum SW]
          Length = 366

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 204/357 (57%), Positives = 271/357 (75%), Gaps = 5/357 (1%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I+ G+ I ++ ++PA SVD++FADPPYNLQL+G+L RP+HS VD V + WD+FS    
Sbjct: 11  NRILVGDCIQLMSQMPAGSVDMVFADPPYNLQLSGELLRPNHSRVDGVDEEWDRFSDLPT 70

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL A R  LK +GTLWVIGSYHNIFR+G++LQ+L FWILNDIVWRKSNPMPNF
Sbjct: 71  YDRFTRDWLGAARHALKDDGTLWVIGSYHNIFRVGSILQDLGFWILNDIVWRKSNPMPNF 130

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +GRRF NAHETLIW + S +AK Y F Y+A+K  NE++QMRSDW +P+C+G+ERLR +DG
Sbjct: 131 KGRRFTNAHETLIWVAKSREAK-YYFAYEAMKNLNEELQMRSDWTLPLCTGAERLRGEDG 189

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPEALL R+L+++T+P D++LDPFFG+GT+GAVAK+LRR +IGIE + +Y  +
Sbjct: 190 QKAHPTQKPEALLYRVLLAATRPDDLVLDPFFGTGTTGAVAKQLRRRWIGIEREHEYARL 249

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  RIA+V+ L   EL  +  +RT+PRV F  LVERGL++PG  L + +  + A V ADG
Sbjct: 250 ANARIAAVEELAEPELVDVPARRTQPRVPFGHLVERGLLKPGTNLFDQRRRVIAKVRADG 309

Query: 321 TLIS----GTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           TL++    G   GSIH+VGA V G   CNGW +W+F++   L  I+ LR  V  E++
Sbjct: 310 TLVAQNHLGQHSGSIHKVGAAVQGLPACNGWTYWHFQEGKSLAPIDVLRQKVIAEMH 366


>gi|114798609|ref|YP_760602.1| modification methylase CcrM [Hyphomonas neptunium ATCC 15444]
 gi|114738783|gb|ABI76908.1| modification methylase CcrM [Hyphomonas neptunium ATCC 15444]
          Length = 360

 Score =  451 bits (1161), Expect = e-125,   Method: Composition-based stats.
 Identities = 192/354 (54%), Positives = 253/354 (71%), Gaps = 2/354 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           ++ II+G+ I VL ++P KSVDL+FADPPYNLQL G L RPD S+VD V D WDKF+SF+
Sbjct: 5   RNTIIQGDCIEVLSRIPDKSVDLVFADPPYNLQLGGGLTRPDQSVVDGVDDEWDKFASFD 64

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YD FT  WL  CRRVLK +G +WVIGSYHNIFR+GT+LQ+  FWI ND++W KSNPMPN
Sbjct: 65  DYDLFTHQWLEECRRVLKDDGAIWVIGSYHNIFRVGTVLQDQGFWIQNDVIWLKSNPMPN 124

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           F+G RFQNAHETLIWA  S  ++  TFNYDALK  NED QMRSDW IP+C+G ERL+++ 
Sbjct: 125 FKGTRFQNAHETLIWAGKSKDSR-VTFNYDALKTFNEDKQMRSDWTIPLCTGGERLKDEA 183

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K HPTQKPE+LL R+L++++ P D++LDPF G+GT+ A A++L R FIGIE ++ Y  
Sbjct: 184 GRKAHPTQKPESLLHRVLLATSNPRDLVLDPFSGTGTTAAAARRLGRDFIGIEREEGYAR 243

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           ++  RI ++ PL    L     K++  RV F  L+E G ++PG  L +AQ    A +  D
Sbjct: 244 LSRARINAITPLEGEVLETERSKKSLARVPFGALIETGWLKPGDRLFSAQRRHQARIRVD 303

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGE-LHSINTLRILVRKEL 372
           G+L +G   GSIHR+GA+V  +  CNGW +W++E     L  I+ LR   R+E+
Sbjct: 304 GSLTTGAITGSIHRLGAQVQQAPACNGWTYWHYETDKRDLAPIDLLRRRYREEM 357


>gi|86748198|ref|YP_484694.1| DNA methylase N-4/N-6 [Rhodopseudomonas palustris HaA2]
 gi|86571226|gb|ABD05783.1| DNA adenine methylase CcrM [Rhodopseudomonas palustris HaA2]
          Length = 377

 Score =  451 bits (1161), Expect = e-125,   Method: Composition-based stats.
 Identities = 219/353 (62%), Positives = 273/353 (77%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++II G+ ++ + KLPAKSVDL+FADPPYNLQL G L RPD S VDAV D WDKFSSF A
Sbjct: 23  NRIIVGDCVAEMSKLPAKSVDLVFADPPYNLQLKGALKRPDESQVDAVDDDWDKFSSFAA 82

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTRAWLLA RR++KP+ T+WVIGSYHNIFR+G ++Q+L FW+LNDIVWRK+NPMPNF
Sbjct: 83  YDDFTRAWLLAARRIMKPSATIWVIGSYHNIFRVGAIMQDLGFWVLNDIVWRKTNPMPNF 142

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RGRRF NAHET+IWA+    AKGYTFNYDALKA+NEDVQ RSDWLIP+C+G ERL+ KDG
Sbjct: 143 RGRRFTNAHETMIWAARDENAKGYTFNYDALKASNEDVQARSDWLIPLCTGDERLKGKDG 202

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K+HPTQKPE LL+R+L+SS+KPGD+++DPF G+GT+GAVAK+LRR++IG E  + Y D 
Sbjct: 203 KKVHPTQKPEGLLARVLLSSSKPGDLVIDPFNGTGTTGAVAKRLRRNYIGFERDRTYADA 262

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  RI +V+PL    L      R  PRVAF+ L+ERG+I PG  L +++    A V ADG
Sbjct: 263 ARARIDAVEPLPEDTLKPFLTARDAPRVAFSELIERGMISPGAKLVDSKKRHGALVRADG 322

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
            ++ G ++GSIHR+GA   GSE CNGW FW+ E    L  I+ LR  VR  + 
Sbjct: 323 AIMLGDKVGSIHRIGAMAQGSEACNGWTFWHVETTKGLRLIDELRAEVRSAMA 375


>gi|90425838|ref|YP_534208.1| DNA methylase N-4/N-6 [Rhodopseudomonas palustris BisB18]
 gi|90107852|gb|ABD89889.1| DNA methylase N-4/N-6 [Rhodopseudomonas palustris BisB18]
          Length = 377

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 215/352 (61%), Positives = 270/352 (76%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I+ G+ ++ + K+ A SVDL+FADPPYNLQL G L RPD S VDAVTD WDKF SF AY
Sbjct: 24  QIVIGDCVAEMSKMAAGSVDLVFADPPYNLQLKGDLKRPDESHVDAVTDDWDKFDSFAAY 83

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTRAWLLACRR++KP  TLWVIGSYHNIFR+GT++Q+L FW+LNDIVWRK+NPMPNFR
Sbjct: 84  DNFTRAWLLACRRIMKPTATLWVIGSYHNIFRVGTIMQDLGFWVLNDIVWRKTNPMPNFR 143

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           GRRF NAHET+IWA+    +KGYTFNY+ALKAANEDVQ RSDWLIP+C+G ERL+  DG+
Sbjct: 144 GRRFTNAHETMIWAARDENSKGYTFNYEALKAANEDVQARSDWLIPLCTGEERLKGADGK 203

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+HPTQKPE LL+R+L+SS+KPGD++LDPF G+GT+GAVAK+L R +IG E   DY   A
Sbjct: 204 KIHPTQKPEGLLARVLLSSSKPGDLVLDPFNGTGTTGAVAKRLGRHYIGFERDHDYAAAA 263

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
             RI +++PL +  L      R+ PRVAF+ L+ERG+I PG  L +++    A V ADG 
Sbjct: 264 RARIDAIEPLPDATLAPFMTARSAPRVAFSELIERGIISPGTKLVDSKKRHGALVRADGA 323

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           ++ G ++GSIHR+GA   GSE CNGW FW+ E    L  I+ LR  +R E+ 
Sbjct: 324 IMLGDKVGSIHRMGAVAQGSEACNGWTFWHVETHKGLRLIDELRAEIRSEMA 375


>gi|307294524|ref|ZP_07574366.1| DNA methylase N-4/N-6 domain protein [Sphingobium chlorophenolicum
           L-1]
 gi|306878998|gb|EFN10216.1| DNA methylase N-4/N-6 domain protein [Sphingobium chlorophenolicum
           L-1]
          Length = 379

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 200/349 (57%), Positives = 261/349 (74%), Gaps = 2/349 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            D +++G+ I+ + KLP   +D+IFADPPYNLQL G L+RP+   VDAV + WDKF +  
Sbjct: 27  TDCLLRGDCIAEMAKLPDACIDMIFADPPYNLQLGGDLFRPEGGRVDAVDNDWDKFDTLG 86

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           +YD FT+AWL   RR+LKPNG++WVIGSYHNIFR+GT LQ+  FWILNDI+WRKSNPMPN
Sbjct: 87  SYDRFTKAWLREARRILKPNGSIWVIGSYHNIFRVGTALQDEGFWILNDIIWRKSNPMPN 146

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           F+G RF NAHETLIWAS    AK YTFNY A+K  N+++QMRSDW++PIC G ERL  ++
Sbjct: 147 FKGTRFTNAHETLIWASQGEDAK-YTFNYKAMKTLNDELQMRSDWVLPICGGQERL-KRN 204

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K HPTQKPEALL R++++ TKPGD++LDPFFG+GT+GAVAK+L R +IGIE + DYI+
Sbjct: 205 GTKAHPTQKPEALLYRVMLACTKPGDVVLDPFFGTGTTGAVAKRLGRKWIGIEREDDYIE 264

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A +RI +  PL    LT++   R +P+VAF  LVE G +QPG +LT+A+    A V AD
Sbjct: 265 VALERIEAALPLDESALTIMQTARQQPKVAFGTLVETGYLQPGAVLTDAKRRWQAVVRAD 324

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
           G+L  G + GSIH++GA + G+ +CNGW FW+ E  G L  I+ LR   
Sbjct: 325 GSLSVGKDTGSIHKMGATLQGAPSCNGWTFWHCEIDGALKPIDALRQTY 373


>gi|27377620|ref|NP_769149.1| adenine DNA methyltransferase [Bradyrhizobium japonicum USDA 110]
 gi|27350765|dbj|BAC47774.1| adenine DNA methyltransferase [Bradyrhizobium japonicum USDA 110]
          Length = 376

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 214/353 (60%), Positives = 268/353 (75%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            +II G+ ++ + KL A SVDL+FADPPYNLQL G L RPD S VDAV D WDKF SF A
Sbjct: 22  HRIILGDCVAEMSKLQAGSVDLVFADPPYNLQLKGDLKRPDESHVDAVNDDWDKFDSFSA 81

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTRAWLLA RR +KP+ T+WVIGSYHNIFR+G ++Q+L FW+LNDIVWRK+NPMPNF
Sbjct: 82  YDDFTRAWLLAARRAMKPSATIWVIGSYHNIFRVGAIMQDLGFWLLNDIVWRKTNPMPNF 141

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RGRRF NAHET+IWA+   KAKGYTFNY+ALKAANEDVQ RSDWLIP+C+G ERL+  DG
Sbjct: 142 RGRRFTNAHETMIWAARDEKAKGYTFNYEALKAANEDVQARSDWLIPLCTGEERLKGADG 201

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K+HPTQKPE LL+R+L+SS+KPGD+++DPF G+GT+GAVAK+L RS+IG E  + Y   
Sbjct: 202 KKVHPTQKPEGLLARVLLSSSKPGDLVIDPFNGTGTTGAVAKRLGRSYIGFERDKTYAKA 261

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  RIA+V+PL    L      R  PRVAF+ L+ERG+I PG  L +A+  + A V ADG
Sbjct: 262 AEARIAAVEPLPEASLAPFMTAREAPRVAFSELIERGMIMPGTKLFDAKKKLGALVRADG 321

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
            ++ G ++GSIHR+GA   G++ CNGW FW+ E    L  I+ LR  +R  + 
Sbjct: 322 AIMFGDKVGSIHRIGAVAQGAQACNGWTFWHVETKKGLKLIDELRAEIRSGMA 374


>gi|126724760|ref|ZP_01740603.1| Site-specific DNA-methyltransferase [Rhodobacterales bacterium
           HTCC2150]
 gi|126705924|gb|EBA05014.1| Site-specific DNA-methyltransferase [Rhodobacterales bacterium
           HTCC2150]
          Length = 345

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 204/343 (59%), Positives = 261/343 (76%), Gaps = 1/343 (0%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           +  LP  SVDLIFADPPYNLQL G L+RPD+S VDAV D WD+F SF  YD F+ AWL A
Sbjct: 1   MNALPENSVDLIFADPPYNLQLKGDLHRPDNSKVDAVDDHWDQFDSFRVYDEFSNAWLKA 60

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
            +R+LKP+G +WVIGSYHNIFR+GT +QN  FW+LND++WRKSNPMPNFRG+RF NAHET
Sbjct: 61  AQRILKPDGAIWVIGSYHNIFRVGTAMQNAGFWMLNDVIWRKSNPMPNFRGKRFTNAHET 120

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           LIWAS + K+K  TFNY+ALKA NE +QMRSDW++P+C+G ERL+N+DG+K HPTQKPE+
Sbjct: 121 LIWASKTEKSKP-TFNYEALKALNEGIQMRSDWVLPLCTGHERLKNEDGDKAHPTQKPES 179

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           LL R+LV++T PGD++LDPFFG+GT+GAVAKKL R FIGIE +++Y  +AT R+  V+  
Sbjct: 180 LLHRVLVATTNPGDVVLDPFFGTGTTGAVAKKLGRDFIGIEREEEYRKVATARLRDVRKY 239

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSI 331
               L V   KR EPRV F  +VERG++ PG+ L +  G   A V ADGTLI     GSI
Sbjct: 240 DRSSLEVTQSKRAEPRVPFGQIVERGMLNPGENLFSLNGRHKAKVRADGTLIGDDVKGSI 299

Query: 332 HRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           H+VGA + G+ +CNGW +W ++  G++  I+ LR  VR E+ +
Sbjct: 300 HQVGAALEGAPSCNGWTYWGYKSEGKMVPIDLLRQQVRAEMSD 342


>gi|23016143|ref|ZP_00055902.1| COG0863: DNA modification methylase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 358

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 204/355 (57%), Positives = 266/355 (74%), Gaps = 4/355 (1%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I+ G+ I+++  LPA SVDL+FADPPYNLQL G+L RP++S V+ V + WD+FS F A
Sbjct: 6   NTILSGDCIAMMNSLPAGSVDLVFADPPYNLQLGGELLRPNNSKVEGVDEDWDRFSDFAA 65

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YDAFTR WL A RRVLK +G LWVIGSYHNIFR+G +LQ+L FW+LNDIVWRK+NPMPNF
Sbjct: 66  YDAFTREWLKAARRVLKDDGGLWVIGSYHNIFRVGAILQDLGFWMLNDIVWRKTNPMPNF 125

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHET+IW + S  ++ YTFNYD++K+ N+D+QMRSDW +P+C+G+ERL  K G
Sbjct: 126 KGTRFTNAHETMIWCAKSSDSR-YTFNYDSMKSLNDDLQMRSDWTLPLCTGAERL-RKAG 183

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K HPTQKPE+LL R++++STKPGD++LDPFFG+GT+GAVAKKL R+FIG E   DYI  
Sbjct: 184 RKTHPTQKPESLLYRVIMASTKPGDVVLDPFFGTGTTGAVAKKLGRNFIGCERDPDYIAA 243

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN-ISATVCAD 319
           A +RIA V  + +  L +   KR EPR+ F  ++ERGL+ PG +L     +   A V AD
Sbjct: 244 AKERIAKVIQVADPSLLMTPSKRAEPRIPFGTVLERGLLTPGDLLFGGTRHDKVAKVRAD 303

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGE-LHSINTLRILVRKELY 373
           GTLI+    GSIH+VGA V G+  CNGW +W+F+  GE    I+ LR  +R EL+
Sbjct: 304 GTLITDDHRGSIHKVGALVQGAPACNGWTYWHFQASGEDYLPIDVLRQKIRAELH 358


>gi|220921468|ref|YP_002496769.1| DNA methylase N-4/N-6 domain-containing protein [Methylobacterium
           nodulans ORS 2060]
 gi|219946074|gb|ACL56466.1| DNA methylase N-4/N-6 domain protein [Methylobacterium nodulans ORS
           2060]
          Length = 368

 Score =  449 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 214/353 (60%), Positives = 265/353 (75%), Gaps = 2/353 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN-GQLYRPDHSLVDAVTDSWDKFSSFE 79
           D++I G+ I+ L+ LP  SVDL+FADPPYNLQL    L RPD S VDAV D WD+F+SFE
Sbjct: 13  DEVIHGDCIAALDALPPSSVDLVFADPPYNLQLGPASLLRPDQSAVDAVDDDWDQFASFE 72

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYDAFTR WL ACRRV+KPN TLWVIGSYHNIFR+G+ LQ+L FWILNDIVWRK+NPMPN
Sbjct: 73  AYDAFTRQWLQACRRVMKPNATLWVIGSYHNIFRVGSALQDLGFWILNDIVWRKANPMPN 132

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+RF NAHETLIWAS S + KGYTF+Y+ALK  N+D+QMRSDW +P+C+G ERL+  D
Sbjct: 133 FRGKRFTNAHETLIWASRSAQ-KGYTFHYEALKGGNDDLQMRSDWFLPLCTGEERLKGAD 191

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G KLHPTQKPEAL++R ++S++ PGD++LDPFFG+GT+GA AK+L R FIGIE +  Y+ 
Sbjct: 192 GRKLHPTQKPEALVARTILSASNPGDVVLDPFFGTGTTGAAAKRLGRRFIGIEREPAYVQ 251

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A +RIA+V+PL    L     KR EPRV F  L+E GLI+ G  LT+ +    A V  D
Sbjct: 252 AARERIAAVEPLSTAALLTAPTKRAEPRVPFLSLLEAGLIRAGSQLTDERRRFKALVRPD 311

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           GT+ +G   GSIH++GA V G   CNGW FW+ E+ G L  I+  R  +R  L
Sbjct: 312 GTISAGPACGSIHKIGALVQGLPACNGWTFWHAERGGRLVPIDAFRAEIRAGL 364


>gi|217977761|ref|YP_002361908.1| DNA methylase N-4/N-6 domain protein [Methylocella silvestris BL2]
 gi|217503137|gb|ACK50546.1| DNA methylase N-4/N-6 domain protein [Methylocella silvestris BL2]
          Length = 379

 Score =  449 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 208/352 (59%), Positives = 259/352 (73%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I+ G+ +  L +LPA SVD +FADPPYNLQL   L RPD SLVDAV D WDKF SF  
Sbjct: 23  NEILIGDCLEQLARLPAASVDAVFADPPYNLQLESTLSRPDQSLVDAVNDDWDKFDSFSH 82

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD+F+R+WL A RRV+KP  TL+VIGSYHNIFR+G+ LQ+  FWILNDIVWRK+NPMPNF
Sbjct: 83  YDSFSRSWLKAVRRVMKPEATLFVIGSYHNIFRVGSTLQDEGFWILNDIVWRKANPMPNF 142

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RGRRF NAHETLIWA+    AK Y FNY+ LKA NED Q+RSDWL PIC+G+ERL+  DG
Sbjct: 143 RGRRFTNAHETLIWAAKDSAAKNYRFNYELLKAGNEDCQLRSDWLFPICTGAERLKGSDG 202

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K HPTQKPEALL+RIL+++T PGD++LDPFFGSGT+GA AK+L R F+GIE  + Y   
Sbjct: 203 RKTHPTQKPEALLARILIAATNPGDVVLDPFFGSGTTGAAAKRLGRHFVGIERDKTYAAA 262

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  RI +V+ L    + +   KRTEPRVAF+ +VE GLI PG  L + +    ATV ADG
Sbjct: 263 ARARIDAVETLPEAAIALTPSKRTEPRVAFSAIVEAGLIAPGDSLVDDKQRHRATVRADG 322

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
            +  G  +GSIH++GA   G   CNGW +W+F + G+L  I+ LR + R +L
Sbjct: 323 AITLGPVVGSIHKIGALAQGLPACNGWTYWHFAQGGKLQPIDALRTVARGKL 374


>gi|75676787|ref|YP_319208.1| DNA methylase N-4/N-6 [Nitrobacter winogradskyi Nb-255]
 gi|74421657|gb|ABA05856.1| DNA adenine methylase CcrM [Nitrobacter winogradskyi Nb-255]
          Length = 376

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 215/353 (60%), Positives = 271/353 (76%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +II G+ ++ + KL A S DLIFADPPYNLQL G L RPD S VDAV   WDKFSSF AY
Sbjct: 23  RIIIGDCVAGMSKLQAGSADLIFADPPYNLQLKGDLKRPDESHVDAVNSDWDKFSSFSAY 82

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTRAWLLACRRV+KP+ T+WVIGSYHNIFR+G ++Q+L FW+LNDIVWRK+NPMPNFR
Sbjct: 83  DEFTRAWLLACRRVMKPSATIWVIGSYHNIFRVGAIMQDLGFWVLNDIVWRKTNPMPNFR 142

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           GRRF NAHET+IWA+    AKGYTFNY+ALKAANEDVQ RSDWLIP+C+G+ERL+++DG 
Sbjct: 143 GRRFTNAHETMIWAARDENAKGYTFNYEALKAANEDVQARSDWLIPLCTGNERLKDEDGR 202

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+HPTQKPE LL+R+L+SS+KPGD+++DPF G+GT+GAVAK+L R++IG E  + Y   A
Sbjct: 203 KVHPTQKPEGLLARVLLSSSKPGDLVIDPFNGTGTTGAVAKRLGRNYIGFERDRTYAAAA 262

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
            KRIA+V+PL    L      R  PRVAF+ L+ERG+I PG  L +A+    A V ADG 
Sbjct: 263 EKRIAAVEPLPEATLAPFMTAREAPRVAFSELIERGMISPGAKLVDAKKRHGALVRADGA 322

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           ++ G ++GSIHR+GA   G+  CNGW FW+ E    L  I+ LR  +R ++ +
Sbjct: 323 IMLGDKVGSIHRIGAVAQGAGACNGWTFWHIETSKGLKLIDELRAEIRSQMAS 375


>gi|254504291|ref|ZP_05116442.1| DNA methylase domain protein [Labrenzia alexandrii DFL-11]
 gi|222440362|gb|EEE47041.1| DNA methylase domain protein [Labrenzia alexandrii DFL-11]
          Length = 346

 Score =  447 bits (1151), Expect = e-124,   Method: Composition-based stats.
 Identities = 214/345 (62%), Positives = 272/345 (78%), Gaps = 1/345 (0%)

Query: 29  ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
           ++ LEKLP++SVDL+FADPPYNLQL G L+RPD S VDA  D WD+F SFEAYDAFTRAW
Sbjct: 1   MAALEKLPSRSVDLVFADPPYNLQLGGDLHRPDQSKVDACDDHWDQFESFEAYDAFTRAW 60

Query: 89  LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
           LLA RRV+K +G+L+VIGSYHNIFR+G +LQ+L FWI+NDIVW KSNPMPNFRG+RF NA
Sbjct: 61  LLAARRVMKTDGSLYVIGSYHNIFRVGAILQDLGFWIMNDIVWLKSNPMPNFRGKRFTNA 120

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
           HET+IWA+ S  AK  TFNYDALK  NED+QMRSDW +P+C+G+ERL+ KDG+K+HPTQK
Sbjct: 121 HETMIWATKSKDAKP-TFNYDALKTFNEDLQMRSDWHLPLCTGAERLKGKDGQKVHPTQK 179

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           PEALL R+L +S+KPGD++LDPFFG+GT+GAVA+KL R+++G+E +QDYID AT RIA++
Sbjct: 180 PEALLYRVLTASSKPGDVVLDPFFGTGTTGAVARKLGRNYVGVEREQDYIDAATARIAAI 239

Query: 269 QPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTEL 328
           QP     L +  GKR + R+ F  L+E G+++PG  LT ++G   A V ADG+L SG   
Sbjct: 240 QPGDEKALEMQQGKRAQKRIPFGTLLENGVLEPGTELTCSKGKHLAIVRADGSLKSGDHT 299

Query: 329 GSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           GSIH+VGA V G E CNGW FW+ ++  +   I+ LR  +R  L 
Sbjct: 300 GSIHKVGALVQGQEACNGWTFWHTKEGSKKSPIDELRKEIRSRLQ 344


>gi|91975680|ref|YP_568339.1| DNA methylase N-4/N-6 [Rhodopseudomonas palustris BisB5]
 gi|91682136|gb|ABE38438.1| DNA adenine methylase CcrM [Rhodopseudomonas palustris BisB5]
          Length = 377

 Score =  447 bits (1151), Expect = e-124,   Method: Composition-based stats.
 Identities = 218/363 (60%), Positives = 279/363 (76%), Gaps = 2/363 (0%)

Query: 13  QNSIFEW--KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
             + FE+  +++II G+ ++ + KLPA+SVDL+FADPPYNLQL G+L RPD S VDAV +
Sbjct: 13  PRTQFEYLPENRIIVGDCVAEMSKLPARSVDLVFADPPYNLQLKGELKRPDESHVDAVDN 72

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
            WDKFSSF AYD FTRAWLLA RR++KP+ T+WVIGSYHNIFR+G ++Q+L FW+LNDIV
Sbjct: 73  DWDKFSSFAAYDDFTRAWLLAARRIMKPSATIWVIGSYHNIFRVGAIMQDLGFWLLNDIV 132

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           WRK+NPMPNFRGRRF NAHET+IWA+    AKGYTFNYDALKAANEDVQ RSDWLIP+C+
Sbjct: 133 WRKTNPMPNFRGRRFTNAHETMIWAARDENAKGYTFNYDALKAANEDVQARSDWLIPLCT 192

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           G ERL+  DG+K+HPTQKPE LL+R+L+SS+KPGD+++DPF G+GT+GAVAK+LRR++IG
Sbjct: 193 GEERLKGSDGKKVHPTQKPEGLLARVLLSSSKPGDLVIDPFNGTGTTGAVAKRLRRNYIG 252

Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQG 310
            E  +DY   A  RIA+++PL    L      R+ PRVAF  L+ERG+I PG  L +++ 
Sbjct: 253 FERDRDYATAAEARIAAIEPLPEATLAPFMTARSAPRVAFAELIERGIISPGTKLVDSKK 312

Query: 311 NISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRK 370
              A V ADG ++ G ++GSIHR+GA   GSE CNGW FW+ E    L  I+ LR  +R 
Sbjct: 313 RHGALVRADGAIMLGDKVGSIHRIGAVAQGSEACNGWTFWHVETSKGLRLIDELRAEIRS 372

Query: 371 ELY 373
            + 
Sbjct: 373 AMA 375


>gi|83313087|ref|YP_423351.1| modification methylase CcrMI [Magnetospirillum magneticum AMB-1]
 gi|82947928|dbj|BAE52792.1| Modification methylase CcrmI [Magnetospirillum magneticum AMB-1]
          Length = 358

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 206/355 (58%), Positives = 264/355 (74%), Gaps = 4/355 (1%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I+ G+ I+++  LPA SVDLIFADPPYNLQL G+L RP++S V+ V + WD+FS F A
Sbjct: 6   NTILSGDCIAMMNSLPAGSVDLIFADPPYNLQLGGELLRPNNSKVEGVDEEWDRFSDFAA 65

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD+FTR WL A RRVLK +G LWVIGSYHNIFR+G++LQ+L FW+LNDIVWRKSNPMPNF
Sbjct: 66  YDSFTRDWLKAARRVLKDDGGLWVIGSYHNIFRVGSILQDLGFWMLNDIVWRKSNPMPNF 125

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHET+IW + S  ++ YTFNYD +KA N+D+QMRSDW +P+C+G ERLRN  G
Sbjct: 126 KGTRFTNAHETMIWCAKSSDSR-YTFNYDTMKALNDDLQMRSDWTLPLCTGGERLRNA-G 183

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K HPTQKPE+LL R++++STKPGD++LDPFFG+GT+GAVAKKL R+FIG E   +YI  
Sbjct: 184 RKTHPTQKPESLLYRVIMASTKPGDVVLDPFFGTGTTGAVAKKLGRNFIGCERDPEYIAA 243

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN-ISATVCAD 319
           A  RIA V P+ +  L +   KR EPRV F  ++ERGL+  G +L     +   A V AD
Sbjct: 244 AKDRIAKVIPVADPSLLLTPSKRAEPRVPFGTVLERGLLTAGDLLFGGTRHDKVAKVRAD 303

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGE-LHSINTLRILVRKELY 373
           GTLI+    GSIH+VGA V G+  CNGW +W+F+   E    I+ LR  +R EL+
Sbjct: 304 GTLITDDHRGSIHKVGALVQGAPACNGWTYWHFQASSEDFLPIDVLRQKIRAELH 358


>gi|182677743|ref|YP_001831889.1| DNA methylase N-4/N-6 domain-containing protein [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182633626|gb|ACB94400.1| DNA methylase N-4/N-6 domain protein [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 395

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 218/370 (58%), Positives = 276/370 (74%), Gaps = 2/370 (0%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           +S  N   ++  +N +    D+I+ G+ +  L +LPA+SVDL+FADPPYNLQL G++ RP
Sbjct: 22  ISTANRPCLSPVENPLP--LDQILLGDCVEKLNRLPAESVDLVFADPPYNLQLEGKILRP 79

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           D S VDAV D+WDKF SF  YD FT  WL A RRV+K + TL+VIGSYHNIFR+GT+LQ+
Sbjct: 80  DQSQVDAVDDAWDKFDSFADYDRFTHEWLAAVRRVMKRHATLFVIGSYHNIFRVGTILQD 139

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
             FWILNDI+WRKSNPMPNFRGRRF NAHET+IWA+ S   K YTF+YDALKA NED Q+
Sbjct: 140 QGFWILNDIIWRKSNPMPNFRGRRFTNAHETMIWAAKSADVKNYTFHYDALKAGNEDHQV 199

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           RSDWL+PICSG ERL+N+ G K HPTQKPE LLSRIL+++T PGD++LDPFFG+GT+GAV
Sbjct: 200 RSDWLLPICSGGERLKNEAGRKTHPTQKPENLLSRILLATTNPGDVVLDPFFGTGTTGAV 259

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           AKKL RSFIGIE +  Y   A  RIA++ PL +  +     KRTEPR+ F  L+E GL+ 
Sbjct: 260 AKKLGRSFIGIEREAGYAAAAKARIAAIDPLPSEAIASFPNKRTEPRIPFMTLIESGLLA 319

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
            G+ LT+ +G   A V ADGTL  G  +GSIH++GA V G   CNGW FW+F++ G+ H 
Sbjct: 320 AGETLTDEKGRHEAVVRADGTLAVGPIIGSIHKIGALVQGLPACNGWTFWHFQRDGQKHP 379

Query: 361 INTLRILVRK 370
           ++ LRI +R+
Sbjct: 380 LDRLRIQLRE 389


>gi|148557470|ref|YP_001265052.1| DNA methylase N-4/N-6 domain-containing protein [Sphingomonas
           wittichii RW1]
 gi|148502660|gb|ABQ70914.1| DNA methylase N-4/N-6 domain protein [Sphingomonas wittichii RW1]
          Length = 382

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 206/353 (58%), Positives = 265/353 (75%), Gaps = 2/353 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I++G+ I  +  LP + VD+IFADPPYNLQL G L+RPD S VDAV D WDKF +F A
Sbjct: 29  NEILRGDCIETMRALPDRCVDMIFADPPYNLQLGGDLHRPDGSQVDAVDDDWDKFDTFAA 88

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL    R+LK +GT+WVIGSYHNIFR+GT LQ+  FW+LNDIVWRK+NPMPNF
Sbjct: 89  YDRFTRDWLREAHRILKDDGTIWVIGSYHNIFRVGTALQDQGFWVLNDIVWRKANPMPNF 148

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIW S + KAK YTFNY  +KA N+DVQMRSDW +PICSG ERL++ DG
Sbjct: 149 KGTRFTNAHETLIWCSKAEKAK-YTFNYRTMKALNDDVQMRSDWTLPICSGGERLKDDDG 207

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K HPTQKPE+LL R++++ T+PGD++LDPFFG+GT+GAVA++L R +IGIE +  YI +
Sbjct: 208 HKAHPTQKPESLLYRVMLACTEPGDLVLDPFFGTGTTGAVARRLGRRWIGIEREDKYIKV 267

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           AT+RIA+  PL    +  +  K+  PR+AF LLVE GLI PG ++T+A+   SATV ADG
Sbjct: 268 ATQRIAATLPLDESAMMSIPEKKAMPRIAFGLLVEGGLIPPGSVVTDARRRWSATVRADG 327

Query: 321 TLISG-TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
            L SG   +GSIHR+GA++  + +CNGW+FW+ E    L  I+ +R     EL
Sbjct: 328 MLASGCGAIGSIHRLGAQLQKAPSCNGWSFWHIETAQGLEPIDAVRQRHLAEL 380


>gi|258542065|ref|YP_003187498.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-01]
 gi|256633143|dbj|BAH99118.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-01]
 gi|256636200|dbj|BAI02169.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-03]
 gi|256639255|dbj|BAI05217.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-07]
 gi|256642309|dbj|BAI08264.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-22]
 gi|256645364|dbj|BAI11312.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-26]
 gi|256648419|dbj|BAI14360.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-32]
 gi|256651472|dbj|BAI17406.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654463|dbj|BAI20390.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-12]
          Length = 367

 Score =  445 bits (1145), Expect = e-123,   Method: Composition-based stats.
 Identities = 200/347 (57%), Positives = 261/347 (75%), Gaps = 1/347 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+I++G  +  +  LP+ SVD +FADPPYNLQL G+L RPD +LVD V D WDKFS  E 
Sbjct: 14  DQILRGECVETMRSLPSGSVDCVFADPPYNLQLRGELRRPDDTLVDGVDDDWDKFSDLEE 73

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTRAWL   RRVL  +GT+WVIGSYHNI+RIG +LQ+L FWILNDIVWRKSNPMPNF
Sbjct: 74  YDRFTRAWLAEARRVLHKDGTIWVIGSYHNIYRIGAILQDLGFWILNDIVWRKSNPMPNF 133

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RGRRF NAHETLIWA+    ++ Y FNY A+KA N+DVQMRSDW +P+C+G+ERLRN+ G
Sbjct: 134 RGRRFTNAHETLIWAARGQDSR-YRFNYQAMKALNDDVQMRSDWYLPLCTGNERLRNEHG 192

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            KLHPTQKPE+LL R+L++ST   D+ILDPF G+GT+ A+A++LRR FIGIE   DY++ 
Sbjct: 193 LKLHPTQKPESLLHRVLLASTTVNDVILDPFSGTGTTAAMARRLRRHFIGIERHPDYVEA 252

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  R+A+  PL    +     KR  PR+ F  LVE+G+I  G ++ + +  + ATV  DG
Sbjct: 253 AMARVAAETPLEADAVQTTQDKREAPRIPFGSLVEQGVIAAGTVVCDKKRRVHATVSPDG 312

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRIL 367
           TL++GT+ GSIH++GA+++ + +CNGW FW+FE+ GEL  ++ LR  
Sbjct: 313 TLVNGTKRGSIHKLGAQLTNAPSCNGWTFWHFERAGELLQLDVLRQE 359


>gi|90420098|ref|ZP_01228006.1| DNA modification methylase BabI [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335432|gb|EAS49182.1| DNA modification methylase BabI [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 379

 Score =  444 bits (1143), Expect = e-123,   Method: Composition-based stats.
 Identities = 228/355 (64%), Positives = 280/355 (78%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W D+I KG+ +S +  LP  SVD+IFADPPYNLQL G L+RPD S VDAV D WD+F SF
Sbjct: 21  WLDRIHKGHCVSQMAALPENSVDVIFADPPYNLQLGGDLHRPDQSKVDAVDDHWDQFESF 80

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AYDAFTRAWLLA RRVLKPNGT+WVIGSYHNIFR+G M+Q+L FW+LND+VWRK+NPMP
Sbjct: 81  QAYDAFTRAWLLAARRVLKPNGTIWVIGSYHNIFRVGAMMQDLGFWMLNDVVWRKTNPMP 140

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           NFRGRRFQNAHET+IWAS    AKGYTFNYDA+K+AN+DVQMRSDWL PICSG ERL++ 
Sbjct: 141 NFRGRRFQNAHETMIWASRDANAKGYTFNYDAMKSANDDVQMRSDWLFPICSGGERLKDA 200

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G K HPTQKPEALL+R+L+SSTKPGD++LDPFFG+GT+GAVAK+L R ++GIE +  YI
Sbjct: 201 EGRKTHPTQKPEALLARVLLSSTKPGDVVLDPFFGTGTTGAVAKRLGRHYVGIEREDVYI 260

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + A  RIA+V+ L    L V  GKR EPR+ F  L+E GL+QPG  LT+A+   +A V A
Sbjct: 261 EAAEARIAAVEALDPTVLKVSAGKRAEPRIPFASLLEAGLVQPGTELTDAKRRWTARVRA 320

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           DGT+  G +  SIHR+GAKV G + CNGW FW+ +    L  I+TLR  +R ++ 
Sbjct: 321 DGTIAIGEDAASIHRIGAKVQGLDACNGWTFWHIDSKKGLTPIDTLRQTMRDQMA 375


>gi|296116693|ref|ZP_06835303.1| DNA methylase N-4/N-6 domain protein [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295976905|gb|EFG83673.1| DNA methylase N-4/N-6 domain protein [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 364

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 200/351 (56%), Positives = 263/351 (74%), Gaps = 1/351 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+I++G+ + +++ LPA S+D +FADPPYNLQL G+L RPD S+VD V D WDKF+  +A
Sbjct: 7   DQILRGDCVEMMQTLPAGSIDCVFADPPYNLQLRGELRRPDDSIVDGVDDDWDKFADLQA 66

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTRAWL   RRVL+ +GT+WVIGSYHNIFRIG +LQ+L FWILND++WRKSNPMPNF
Sbjct: 67  YDRFTRAWLSEARRVLRKDGTIWVIGSYHNIFRIGAILQDLGFWILNDVIWRKSNPMPNF 126

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RGRRF NAHETLIWA+  P ++ Y FNY A+KA N+DVQMRSDW +P+C+G ERLRN+ G
Sbjct: 127 RGRRFTNAHETLIWAARGPDSR-YRFNYQAMKALNDDVQMRSDWYLPLCTGGERLRNEHG 185

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            KLHPTQKPE+LL R+L++ST   D++LDPF G+GT+ A+A++LRR FIGIE   DY + 
Sbjct: 186 LKLHPTQKPESLLHRVLIASTNVDDVVLDPFTGTGTTPAMARRLRRRFIGIERHPDYAEA 245

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  R    +P+    +     +R  PR+ F  LVER ++ PG +L + Q  +SATV  DG
Sbjct: 246 AIGRARREKPVPLDSVLTTPARRECPRIPFGTLVERAILPPGTVLMDRQKRVSATVAPDG 305

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           TLISG   GSIH++GA ++ + +CNGW FW+FE+ G L  ++ LR  +R E
Sbjct: 306 TLISGGHRGSIHKLGATLTNAPSCNGWTFWHFERAGVLQPLDILRNELRAE 356


>gi|329114180|ref|ZP_08242942.1| Modification methylase SmeI [Acetobacter pomorum DM001]
 gi|326696256|gb|EGE47935.1| Modification methylase SmeI [Acetobacter pomorum DM001]
          Length = 367

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 201/347 (57%), Positives = 261/347 (75%), Gaps = 1/347 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+I++G  +  +  LP+ SVD +FADPPYNLQL G+L RPD +LVD V D WDKFS  E 
Sbjct: 14  DQILRGECVETMRSLPSGSVDCVFADPPYNLQLRGELRRPDDTLVDGVDDDWDKFSDLEE 73

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTRAWL   RRVL  +GT+WVIGSYHNI+RIG +LQ+L FWILNDIVWRKSNPMPNF
Sbjct: 74  YDRFTRAWLAEARRVLHKDGTIWVIGSYHNIYRIGAILQDLGFWILNDIVWRKSNPMPNF 133

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RGRRF NAHETLIWA+    ++ Y FNY A+KA N+DVQMRSDW +P+C+G+ERLRN+ G
Sbjct: 134 RGRRFTNAHETLIWAARGQDSR-YRFNYQAMKALNDDVQMRSDWYLPLCTGNERLRNEHG 192

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            KLHPTQKPE+LL R+L++ST   D+ILDPF G+GT+ A+A++LRR FIGIE   DY++ 
Sbjct: 193 LKLHPTQKPESLLHRVLLASTTVNDVILDPFSGTGTTAAMARRLRRHFIGIERHPDYVEA 252

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  R+A+  PL    +     KR  PR+ F  LVE+G+I  G ++ + +  + ATV  DG
Sbjct: 253 AMARVAAETPLEADAVQTTQDKREAPRIPFGSLVEQGVIAAGTVVCDKKRRVHATVSPDG 312

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRIL 367
           TL++GT+ GSIH++GA+++ + +CNGW FWYFE+ GEL  ++ LR  
Sbjct: 313 TLVNGTKRGSIHKLGAQLTNAPSCNGWTFWYFERAGELLQLDVLRQE 359


>gi|85707872|ref|ZP_01038938.1| Site-specific DNA-methyltransferase [Erythrobacter sp. NAP1]
 gi|85689406|gb|EAQ29409.1| Site-specific DNA-methyltransferase [Erythrobacter sp. NAP1]
          Length = 379

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 200/348 (57%), Positives = 255/348 (73%), Gaps = 2/348 (0%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I+ G+ I  +  LP  SVD +FADPPYNLQL G L RPD S VDAVTD WD+F SF AY
Sbjct: 29  QILDGDCIEAMRSLPDNSVDCVFADPPYNLQLGGDLNRPDGSEVDAVTDHWDQFDSFRAY 88

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTR WL   RRVLKP+G+LWVIGSYHNIFR G +LQ+L FWILNDIVWRK+NPMPNF+
Sbjct: 89  DDFTREWLTEARRVLKPDGSLWVIGSYHNIFRCGAILQDLGFWILNDIVWRKTNPMPNFK 148

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G RF NAHETLIWAS   KA+ Y FNY A+K  N+++QMRSDW++PICSG ERL  ++G+
Sbjct: 149 GTRFTNAHETLIWASQGEKAR-YHFNYRAMKTLNDELQMRSDWVLPICSGGERL-KENGK 206

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HPTQKPEALL R+L+++T+ GD++LDPFFG+GT+GAVAK+L R +IG E ++ Y  +A
Sbjct: 207 KAHPTQKPEALLYRVLLATTEKGDVVLDPFFGTGTTGAVAKRLGREWIGCEREEFYRGVA 266

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
            KRI    PL    LT +  K+  PRVAF  +VE GLI PG  + + +    ATV ADG+
Sbjct: 267 MKRIEKELPLDESALTTMQSKKAAPRVAFGAVVENGLIPPGTQVFDKKRRWVATVRADGS 326

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVR 369
           L    ++GSIH +G ++  + +CNGW FW++E  GE+  ++  R L R
Sbjct: 327 LDCDGKVGSIHGLGKELQEAPSCNGWTFWHYENGGEIKPVDAARELYR 374


>gi|299134661|ref|ZP_07027853.1| DNA methylase N-4/N-6 domain protein [Afipia sp. 1NLS2]
 gi|298590471|gb|EFI50674.1| DNA methylase N-4/N-6 domain protein [Afipia sp. 1NLS2]
          Length = 376

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 220/372 (59%), Positives = 279/372 (75%), Gaps = 1/372 (0%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
           S++ + A     N       +I+ G+ ++ + KLPA SVDL+FADPPYNLQL G+L RPD
Sbjct: 4   SRRGASAKAPRTNFETSPSSRIVIGDCVAEMTKLPASSVDLVFADPPYNLQLKGELKRPD 63

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
            S VDAV + WDKFSSF AYD FTRAWLLA RR +KP+ T+WVIGSYHNIFR+G ++Q+L
Sbjct: 64  ESHVDAVNNDWDKFSSFAAYDDFTRAWLLAARRAMKPSATIWVIGSYHNIFRVGAIMQDL 123

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
            FWILNDIVWRK+NPMPNFRGRRF NAHET+IWA+     K YTFNYDALKAANEDVQ R
Sbjct: 124 GFWILNDIVWRKTNPMPNFRGRRFTNAHETMIWAARDESTK-YTFNYDALKAANEDVQAR 182

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
           SDWLIP+C+G ERL+ KDG+K+HPTQKPE LL+R+L+SS+KPGD+++DPF G+GT+GAVA
Sbjct: 183 SDWLIPLCTGDERLKGKDGKKVHPTQKPEGLLARVLLSSSKPGDLVIDPFNGTGTTGAVA 242

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP 301
           K+L RS+IG E  + Y   A KRIA+V+PL    L      R  PRVAF+ L+ERG+I P
Sbjct: 243 KRLGRSYIGFERDKTYAAAAEKRIAAVEPLPEATLAPFLTARDAPRVAFSELIERGMISP 302

Query: 302 GQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSI 361
           G  L +++   +A V ADG ++ G ++GSIHR+GA   GSE CNGW+FW+ E    L  I
Sbjct: 303 GAKLVDSKKKHAALVRADGAIMLGDKVGSIHRMGAVAQGSEACNGWSFWHVETKKGLRLI 362

Query: 362 NTLRILVRKELY 373
           + LR  +R+E+ 
Sbjct: 363 DELRAEIRREMQ 374


>gi|114769696|ref|ZP_01447306.1| Site-specific DNA-methyltransferase [alpha proteobacterium
           HTCC2255]
 gi|114549401|gb|EAU52283.1| Site-specific DNA-methyltransferase [alpha proteobacterium
           HTCC2255]
          Length = 368

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 214/362 (59%), Positives = 270/362 (74%), Gaps = 1/362 (0%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
           + + SI    + II G+ + V+  LP  S+DLIFADPPYNLQL G L+RPD+S VDAV D
Sbjct: 6   KKEGSIKLPLNNIIDGDCVEVMNSLPENSIDLIFADPPYNLQLKGDLHRPDNSKVDAVDD 65

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
            WD+F SF  YD F+R WL A RRVLKPNG LWVIGSYHNIFR+GT LQ+  FWILND++
Sbjct: 66  HWDQFDSFAIYDKFSRNWLKAARRVLKPNGALWVIGSYHNIFRVGTALQDAGFWILNDVI 125

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           WRKSNPMPNFRG R  NAHET+IWA  + K+K  TFNY+ALKA N+ VQMRSDW +PIC+
Sbjct: 126 WRKSNPMPNFRGVRLTNAHETMIWAGKTEKSKP-TFNYEALKALNDGVQMRSDWHLPICN 184

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           G+ERL+N  G+K HPTQKPE+LL R++V ST  GD+ILDPFFGSGT+GAVAKKL R+FIG
Sbjct: 185 GNERLKNDAGDKAHPTQKPESLLHRVIVGSTNEGDVILDPFFGSGTTGAVAKKLGRNFIG 244

Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQG 310
           IE +++Y  +A KRI +++      L V T KR EPRV F  +VERG+++PG  L +  G
Sbjct: 245 IEREEEYRKVAKKRIKAIKKYDVESLKVSTSKRAEPRVPFGQVVERGMLKPGDQLYSLNG 304

Query: 311 NISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRK 370
             SA + ADGTL++  + GSIH+VGA + G+ +CNGW +W F+K GE   I+ LR  +R 
Sbjct: 305 RHSAKIHADGTLVAHDQRGSIHQVGAALEGAPSCNGWTYWCFKKRGEAIPIDMLRKKIRA 364

Query: 371 EL 372
           E+
Sbjct: 365 EM 366


>gi|296284401|ref|ZP_06862399.1| modification methylase [Citromicrobium bathyomarinum JL354]
          Length = 383

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 200/347 (57%), Positives = 255/347 (73%), Gaps = 1/347 (0%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I+ G+ +  + +LP  SVDL+FADPPYNLQL G L RPD S VDAVTD WD+F SF+ Y
Sbjct: 32  QILDGDCVEAMRRLPDNSVDLVFADPPYNLQLGGDLNRPDGSHVDAVTDHWDQFDSFKVY 91

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F++AWL  CRRVLKP+G LWVIGSYHNI+R+G  LQ+L FWILNDIVWRK+NPMPNFR
Sbjct: 92  DDFSKAWLAECRRVLKPDGALWVIGSYHNIYRLGATLQDLGFWILNDIVWRKTNPMPNFR 151

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G RF NAHETLIWAS   KA+ Y FNY A+K  N+++QMRSDW  PICSG ERL++  G 
Sbjct: 152 GTRFTNAHETLIWASQGEKAR-YHFNYRAMKTLNDELQMRSDWTFPICSGGERLKDDAGH 210

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HPTQKPEALL R+L+++T+ GD++LDPFFG+GT+GA+AK+L R +IG E ++ Y  +A
Sbjct: 211 KAHPTQKPEALLYRVLLATTEWGDVVLDPFFGTGTTGAIAKRLGREWIGCEREESYRKVA 270

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
             RI    PL    LT +  KRT PRVAF  LVE G ++PG  + + Q   +ATV ADG+
Sbjct: 271 RARIEKELPLDESALTTMQSKRTAPRVAFGTLVEAGFVKPGTQVFDKQRRWTATVRADGS 330

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
           L+     GSIH+VG  + G+ +CNGW FW+FE  G + +++  R L 
Sbjct: 331 LVHEKLNGSIHQVGKDLQGAPSCNGWTFWHFEDEGAVKALDAARQLY 377


>gi|85373286|ref|YP_457348.1| modification methylase [Erythrobacter litoralis HTCC2594]
 gi|84786369|gb|ABC62551.1| modification methylase [Erythrobacter litoralis HTCC2594]
          Length = 380

 Score =  441 bits (1135), Expect = e-122,   Method: Composition-based stats.
 Identities = 195/347 (56%), Positives = 252/347 (72%), Gaps = 2/347 (0%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I+ G+ +  +  LP  SVDL+FADPPYNLQL G L RPD S VDAVTD WD+F SF  Y
Sbjct: 30  QILSGDCVEAMRSLPDASVDLVFADPPYNLQLGGDLNRPDGSHVDAVTDHWDQFDSFAIY 89

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTR WL   +R+LKP+G LWVIGSYHNI+R+G +LQ+L FWILNDIVWRK+NPMPNFR
Sbjct: 90  DQFTREWLTEAKRILKPDGALWVIGSYHNIYRVGAILQDLGFWILNDIVWRKTNPMPNFR 149

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G RF NAHETL+WAS   KAK Y FNY A+K  N+++QMRSDW+IPIC+G+ERL  ++G 
Sbjct: 150 GTRFTNAHETLLWASQGEKAK-YHFNYTAMKTLNDELQMRSDWVIPICNGAERL-KENGT 207

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HPTQKPEALL R+L+++T+ GD+++DPFFG+GT+GAVAK+L R +IG E +  Y  +A
Sbjct: 208 KAHPTQKPEALLYRVLLATTEKGDVVVDPFFGTGTTGAVAKRLGREWIGCEREDVYRGVA 267

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
            KRI    PL    L V+  KR  P+VAF  LVE G ++PG  + + +    ATV ADG+
Sbjct: 268 MKRIEKELPLDESALKVMQSKRAAPKVAFGALVEAGFLKPGTEVFDTKRRWVATVRADGS 327

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
           L  G + GSIH +G ++ G+ +CNGW FW++E  G    ++  R L 
Sbjct: 328 LECGKQTGSIHGLGKELQGAPSCNGWTFWHYEDEGVAKPLDAARQLY 374


>gi|148253825|ref|YP_001238410.1| DNA adenine methylase CcrM [Bradyrhizobium sp. BTAi1]
 gi|146405998|gb|ABQ34504.1| DNA adenine methylase CcrM [Bradyrhizobium sp. BTAi1]
          Length = 344

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 212/342 (61%), Positives = 264/342 (77%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           + KLP  SVDL+FADPPYNLQL G+L RPD S VDAV D WDKFSSF AYD FTRAWLLA
Sbjct: 1   MSKLPGASVDLVFADPPYNLQLKGELKRPDESQVDAVDDDWDKFSSFAAYDDFTRAWLLA 60

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
            RR++KP+ T+WVIGSYHNIFR+G ++Q+L FWILNDIVWRKSNPMPNFRGRRF NAHET
Sbjct: 61  ARRLMKPSATIWVIGSYHNIFRVGAIMQDLGFWILNDIVWRKSNPMPNFRGRRFTNAHET 120

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           +IWA+   KAKGYTFNY+ALKA+NEDVQ RSDWLIP+C+G ERL++ DG+K+HPTQKPE 
Sbjct: 121 MIWAARDEKAKGYTFNYEALKASNEDVQARSDWLIPLCTGEERLKDADGKKVHPTQKPEG 180

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           LL+R+L+SS+KPGD+++DPF G+GT+GAVAK+L R +IG E  + Y + A +RIA+V+PL
Sbjct: 181 LLARVLLSSSKPGDLVIDPFNGTGTTGAVAKRLGRRYIGFERDKTYAEAAERRIAAVEPL 240

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSI 331
               L      R  PRVAF+ L+ERG+I PG  L +++    A V ADG ++ G ++GSI
Sbjct: 241 PEATLVPFMTAREAPRVAFSELIERGMISPGTKLVDSKRRHGALVRADGAIMLGDKVGSI 300

Query: 332 HRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           HR+GA   G   CNGW FW+ E    L  I+ LR  +R E+ 
Sbjct: 301 HRIGAVAQGLPACNGWTFWHVETTRGLKLIDELRAEIRAEMS 342


>gi|149185912|ref|ZP_01864227.1| modification methylase [Erythrobacter sp. SD-21]
 gi|148830473|gb|EDL48909.1| modification methylase [Erythrobacter sp. SD-21]
          Length = 380

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 197/347 (56%), Positives = 256/347 (73%), Gaps = 2/347 (0%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I+ G+ +  + ++P+ S+DL+FADPPYNLQL G L RPD S VDAVTD WDKF +F AY
Sbjct: 30  QILDGDCVEAMRQIPSASIDLVFADPPYNLQLGGDLNRPDGSHVDAVTDDWDKFDTFSAY 89

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTR WL+  +R+LKP+G LWVIGSYHNI+R+G +LQ+L FWILNDIVWRKSNPMPNFR
Sbjct: 90  DTFTRDWLIEAKRILKPDGALWVIGSYHNIYRVGAILQDLGFWILNDIVWRKSNPMPNFR 149

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G RF NAHETL+W S   KAK Y FNY A+K  N+++QMRSDW++PIC+G+ERL  + G 
Sbjct: 150 GTRFTNAHETLLWCSQGEKAK-YHFNYRAMKTLNDELQMRSDWVLPICNGAERL-KEGGH 207

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+HPTQKPEALL R+L+S+T+ GD++LDPFFG+GT+GAVAK+L R +IG E +  Y + A
Sbjct: 208 KVHPTQKPEALLYRVLLSTTERGDVVLDPFFGTGTTGAVAKRLGREWIGCEREGVYRNAA 267

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
            KRI    PL    LT +   R+ P+VAF  LVE G I PG  L + +   +ATV ADG+
Sbjct: 268 LKRIEKELPLDESALTTMQAGRSAPKVAFGALVENGYIAPGTKLFDKKRRWTATVRADGS 327

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
           L    + GSIH +G ++ G+ +CNGW FW++E  GE+  I+  R L 
Sbjct: 328 LACEKQTGSIHGLGKELQGAPSCNGWTFWHYENGGEVKPIDAARQLY 374


>gi|146339056|ref|YP_001204104.1| adenine DNA methyltransferase [Bradyrhizobium sp. ORS278]
 gi|146191862|emb|CAL75867.1| adenine DNA methyltransferase [Bradyrhizobium sp. ORS278]
          Length = 344

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 213/342 (62%), Positives = 264/342 (77%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           + KLP  SVDL+FADPPYNLQL G+L RPD S VDAV D WDKFSSF AYD FTRAWLLA
Sbjct: 1   MSKLPGASVDLVFADPPYNLQLKGELKRPDESQVDAVDDDWDKFSSFTAYDDFTRAWLLA 60

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
            RRV+KP+ T+WVIGSYHNIFR+G ++Q+L FWILNDIVWRKSNPMPNFRGRRF NAHET
Sbjct: 61  ARRVMKPSATIWVIGSYHNIFRVGAIMQDLGFWILNDIVWRKSNPMPNFRGRRFTNAHET 120

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           +IWA+   KAKGYTFNY+ALKA+NEDVQ RSDWLIP+C+G ERL++ DG+K+HPTQKPE 
Sbjct: 121 MIWAARDEKAKGYTFNYEALKASNEDVQARSDWLIPLCTGEERLKDGDGKKVHPTQKPEG 180

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           LL+R+L+SS+K GD+++DPF G+GT+GAVAK+L R +IG E  + Y + A +RIA+V+PL
Sbjct: 181 LLARVLLSSSKQGDLVIDPFNGTGTTGAVAKRLGRRYIGFERDKAYAEAAERRIAAVEPL 240

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSI 331
               L      R  PRVAF+ L+ERG+I PG  L +++    A V ADG ++ G ++GSI
Sbjct: 241 PAETLAPFMTAREAPRVAFSELIERGMIAPGAKLVDSKRRYGALVRADGAIMLGDKVGSI 300

Query: 332 HRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           HR+GA   G   CNGW FW+ E  G L  I+ LR  +R E+ 
Sbjct: 301 HRIGAVAQGLPACNGWTFWHVETKGGLRLIDELRAEIRSEMN 342


>gi|300024384|ref|YP_003756995.1| DNA methylase N-4/N-6 domain protein [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526205|gb|ADJ24674.1| DNA methylase N-4/N-6 domain protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 375

 Score =  438 bits (1126), Expect = e-121,   Method: Composition-based stats.
 Identities = 200/350 (57%), Positives = 259/350 (74%), Gaps = 1/350 (0%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I+ G+ I+ L+K+   SVDL+FADPPYNLQL G L RP+++ VD V D+WDKF  F  Y
Sbjct: 14  RILVGDCINELKKIATASVDLVFADPPYNLQLAGDLLRPNNTKVDGVDDAWDKFQDFAEY 73

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D+F RAWL  CRRVLKP+G +WVIGSYHNIFR+G  +Q+L FWI ND++WRK NPMPNFR
Sbjct: 74  DSFCRAWLKECRRVLKPDGAIWVIGSYHNIFRLGVAIQDLGFWIQNDVIWRKVNPMPNFR 133

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G+RF NAHET+IWA    K++  TFNY++LKA+N+D+QMRSDWL PICSG ERL++  G 
Sbjct: 134 GKRFTNAHETMIWAGRDRKSR-VTFNYESLKASNDDLQMRSDWLFPICSGPERLKDDGGR 192

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HPTQKPEALL RI+++STKPGD +LDPFFG+GT+GAVAK+L R FIGIE   DY   A
Sbjct: 193 KAHPTQKPEALLHRIMIASTKPGDTVLDPFFGTGTTGAVAKRLGRKFIGIERDTDYARAA 252

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
            +RIA V+PL    +  +  KR+EPR+ F  ++E G+++PGQ L   +  + A V ADGT
Sbjct: 253 DERIAKVRPLDLDAIEAIPSKRSEPRIPFGQILELGILEPGQKLFGPRREVRAEVRADGT 312

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           L    +  SIHR+GA V G   CNGW +W+FE  G+L  I+ LR   +++
Sbjct: 313 LACAGQQASIHRLGAMVQGKAACNGWTYWHFEAEGKLRPIDVLRGEAKRQ 362


>gi|294085234|ref|YP_003551994.1| DNA methylase N-4/N-6 [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664809|gb|ADE39910.1| DNA methylase N-4/N-6 [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 363

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 196/356 (55%), Positives = 265/356 (74%), Gaps = 3/356 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K+ +++G+ +  L+ L   SVDL+FADPPYNLQL+  L RPD S V +V DSWD+F SF 
Sbjct: 3   KNIVLQGDCVETLKTLAKNSVDLVFADPPYNLQLSELLVRPDQSSVVSVDDSWDQFDSFA 62

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FT AW+   RRVLKPNG +WVIGSYHNIFR+G ++Q+L FW+LND++WRK+NPMPN
Sbjct: 63  AYDEFTLAWMREVRRVLKPNGAIWVIGSYHNIFRVGKIMQDLGFWVLNDVIWRKTNPMPN 122

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRGRRF NAHET+IWA+ S KAK +TFNY+A+KA N+DVQMRSDW +P+C+G ERL  ++
Sbjct: 123 FRGRRFTNAHETMIWAAKSQKAK-HTFNYEAMKALNDDVQMRSDWELPLCTGHERL-KEN 180

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G++ HPTQKPE+LL+R++++STK  D+ILDPFFG+GT+GAVA++L R+FIGIE   DY+ 
Sbjct: 181 GKRAHPTQKPESLLARVILASTKRDDVILDPFFGTGTTGAVARRLNRNFIGIEQNPDYVK 240

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A  RI  V P+ + +L     KR  P++ F  L+ERG++QPG  L +A+   SA V AD
Sbjct: 241 LARDRIDQVTPIASPDLLASEQKRALPKIPFGTLIERGILQPGDRLFDAKKRFSAQVRAD 300

Query: 320 GTLI-SGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           G+L+    E GSIH +GA++    +CNGW FW+ E+ G+   I+  R  +R    N
Sbjct: 301 GSLVTDSKESGSIHSLGAQLQSLPSCNGWIFWHVERDGKPVLIDRFREDIRASNQN 356


>gi|114328523|ref|YP_745680.1| adenine-specific methyltransferase [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316697|gb|ABI62757.1| adenine-specific methyltransferase [Granulibacter bethesdensis
           CGDNIH1]
          Length = 385

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 204/353 (57%), Positives = 265/353 (75%), Gaps = 2/353 (0%)

Query: 14  NSIFEW-KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           N++ E   D+++ G+ + V++ LP  SVD IFADPPYNLQL G+L RPD S+VD V D W
Sbjct: 11  NTVSELPIDQVLLGDCVQVMQMLPTGSVDCIFADPPYNLQLRGELRRPDESIVDGVDDDW 70

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           D+F+ + AYDAF+RAWL  CRR+L+ +GT+WVIG+YHNIFR+GT+LQ+L FWILND+VWR
Sbjct: 71  DRFTDYAAYDAFSRAWLTECRRLLRKDGTIWVIGAYHNIFRLGTILQDLGFWILNDVVWR 130

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K+NPMPNFRGRRF NAHETLIWA+    ++ + FNY A+K  N+DVQMRSDW +P+C+GS
Sbjct: 131 KANPMPNFRGRRFTNAHETLIWAARGQDSR-HRFNYQAMKTLNDDVQMRSDWFLPLCTGS 189

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           ER+RN  G KLHPTQKPE+LL R+L+SST PGD++LDPF G+GTS AVAK+L+RSFIGIE
Sbjct: 190 ERMRNDHGLKLHPTQKPESLLYRVLLSSTVPGDVVLDPFLGTGTSAAVAKRLQRSFIGIE 249

Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNI 312
               Y + A  R+ SV+P     L ++  +R + RV F  LVE+GL+  G IL +    +
Sbjct: 250 RHPAYAEAAIGRLRSVEPAPLDNLNIMPSRREQKRVPFGSLVEQGLLPMGSILMDRLRRV 309

Query: 313 SATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLR 365
           SA V ADG++ SG   GSIH+VGA V  + +CNGW FW+FE  GE   I+ LR
Sbjct: 310 SALVQADGSIASGAHRGSIHQVGAAVQNAPSCNGWTFWFFELRGEWVPIDVLR 362


>gi|296536588|ref|ZP_06898668.1| site-specific DNA-methyltransferase (adenine-specific) [Roseomonas
           cervicalis ATCC 49957]
 gi|296263084|gb|EFH09629.1| site-specific DNA-methyltransferase (adenine-specific) [Roseomonas
           cervicalis ATCC 49957]
          Length = 363

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 199/349 (57%), Positives = 255/349 (73%), Gaps = 2/349 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I++G+ I +L  LP  SV  IFADPPYNLQL G+L RPD S+VD V D+WD+FS    
Sbjct: 10  DCILEGDCIEMLRALPPASVHAIFADPPYNLQLKGELRRPDESVVDGVDDAWDRFSDLAT 69

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD+FTRAWL   RRVL+ +GT+WVIGSYHN+FR+G  LQ+L+FWILND++WRK+NPMPNF
Sbjct: 70  YDSFTRAWLTEARRVLRKDGTIWVIGSYHNVFRLGVALQDLDFWILNDVIWRKANPMPNF 129

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RGRRF NAHETLIWAS   +++ Y FNY A+K+ N+DVQMRSDW IP+C+GSERLR++ G
Sbjct: 130 RGRRFTNAHETLIWASRGQESR-YKFNYTAMKSLNDDVQMRSDWFIPLCTGSERLRDEKG 188

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K+HPTQKPEALL R+++S T PGD++LDPF GSGT+ AVA++L R +IGIE    Y   
Sbjct: 189 QKVHPTQKPEALLHRVILSCTSPGDVVLDPFLGSGTTAAVARRLGRRYIGIERDPTYAAA 248

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  RI +V+PL    + V   KR +PR+ F  LVERGL+ PG  L +      A V ADG
Sbjct: 249 ARARIQAVEPLSESAMLVTPTKREQPRIPFGALVERGLVPPGARLVDRHRRFVAEVGADG 308

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFE-KLGELHSINTLRILV 368
           +L  G   GSIH+VGA V  + +CNGW FW+ E + G L  ++ LR  +
Sbjct: 309 SLRCGKAQGSIHQVGAAVQEAPSCNGWLFWHVERRDGTLRLLDELRAEL 357


>gi|103486455|ref|YP_616016.1| DNA methylase N-4/N-6 [Sphingopyxis alaskensis RB2256]
 gi|98976532|gb|ABF52683.1| DNA methylase N-4/N-6 [Sphingopyxis alaskensis RB2256]
          Length = 379

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 203/347 (58%), Positives = 250/347 (72%), Gaps = 3/347 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I++G+ ++++  LPA SVD+IFADPPYNLQL G L RPD S VDAV D WDKF S   
Sbjct: 27  DSILQGDCVAMMRGLPAASVDMIFADPPYNLQLGGDLLRPDGSQVDAVDDDWDKFDSLAT 86

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FT AWL   RR+LKP G++WVIGSYHNIFR+G  LQ+  +WILNDIVWRK+NPMPNF
Sbjct: 87  YDRFTHAWLKEARRILKPGGSIWVIGSYHNIFRVGAALQDQGYWILNDIVWRKANPMPNF 146

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWAS   KA+ YTFNY A+K  N+++QMRSDWLIPIC G ERL  K G
Sbjct: 147 KGTRFTNAHETLIWASMGEKAR-YTFNYRAMKTLNDELQMRSDWLIPICGGPERL-KKGG 204

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K+HPTQKPEALL RIL++ + PGD+ILDPFFG+GT+GAVAK+L R +IGIE + DYI  
Sbjct: 205 HKVHPTQKPEALLYRILLACSNPGDVILDPFFGTGTTGAVAKRLGRHYIGIEREDDYIAA 264

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A +RI    PL    +  +   +   RVAF  LVE GLI PG +LT+A+    A V  DG
Sbjct: 265 AKERIELALPLDESAVKTMMAPKAATRVAFGTLVECGLIAPGTVLTDAKRRWKAKVRVDG 324

Query: 321 TLISGTEL-GSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRI 366
           +L    +  GSIH+VGA V G+ +CNGW FW+ +   EL  I+ +R 
Sbjct: 325 SLDCEGQAPGSIHKVGAGVQGAPSCNGWTFWHVDTGQELRVIDAVRQ 371


>gi|58038819|ref|YP_190783.1| adenine DNA methyltransferase [Gluconobacter oxydans 621H]
 gi|58001233|gb|AAW60127.1| Adenine DNA methyltransferase [Gluconobacter oxydans 621H]
          Length = 361

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 194/350 (55%), Positives = 257/350 (73%), Gaps = 1/350 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+I++G  I  ++ LP  SVD IFADPPYNLQL G+L RPD ++VD V D WDKF+ +  
Sbjct: 8   DQILRGECIETMKTLPDGSVDCIFADPPYNLQLRGELRRPDETVVDGVDDDWDKFADYAT 67

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL   RR+L  +GT+WVIGSYHN+FR+G ++Q+L FWILNDIVWRKSNPMPNF
Sbjct: 68  YDNFTREWLSEARRILHKDGTIWVIGSYHNVFRLGAIMQDLGFWILNDIVWRKSNPMPNF 127

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RGRRF NAHETLIWA+  P++K Y FNY A+KA N+D+QMRSDW +P+C+G+ERL+N+ G
Sbjct: 128 RGRRFTNAHETLIWAARGPQSK-YRFNYQAMKALNDDLQMRSDWYLPLCTGNERLKNEHG 186

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            KLHPTQKPE+LL R+LV+ST   D++LDPF GSGT+ A+AK+L R +I IE   DY+  
Sbjct: 187 LKLHPTQKPESLLHRVLVASTNANDVVLDPFCGSGTTPAMAKRLGRHYIAIERHPDYVKA 246

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A +R+A  + L + +L     KR  PR+ F   VE G++  G +L + Q  + ATV  DG
Sbjct: 247 ARERVAREERLTSEQLATTPAKREMPRIPFGSFVETGVLPAGTLLYDRQKRLKATVTPDG 306

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRK 370
           TL+SG + GSIH++GA ++ + +CNGW FWYFE+ G+   I+ LR   + 
Sbjct: 307 TLVSGNQRGSIHKLGAMLTNAPSCNGWTFWYFERDGQYVQIDVLRQESQA 356


>gi|260752543|ref|YP_003225436.1| DNA methylase N-4/N-6 domain protein [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|283856387|ref|YP_162740.2| DNA methylase N-4/N-6 domain-containing protein [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|163881967|gb|ABY48039.1| cell cycle regulating DNA methyltransferase [Zymomonas mobilis
           subsp. mobilis]
 gi|258551906|gb|ACV74852.1| DNA methylase N-4/N-6 domain protein [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|283775386|gb|AAV89629.2| DNA methylase N-4/N-6 domain protein [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 382

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 203/372 (54%), Positives = 266/372 (71%), Gaps = 2/372 (0%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           MS+++     E  +S     + I+ GN I +L+ LP  SVDLIFADPPYNLQL+G+L+RP
Sbjct: 10  MSEEDIGGDTELSDSPTLPLNSILAGNCIEILKTLPDNSVDLIFADPPYNLQLSGELFRP 69

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           + S VDAV ++WDKF +F AYD FTR WL    RVLK +GT+WVIGSYHNIFR+GT LQ+
Sbjct: 70  EGSRVDAVNNAWDKFDTFAAYDHFTRLWLKEAHRVLKEDGTIWVIGSYHNIFRVGTALQD 129

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
             FWILNDI+WRKSNPMPNF+GRRF NAHETLIWAS S K++ Y FNY +LK  N+D+QM
Sbjct: 130 QGFWILNDIIWRKSNPMPNFKGRRFTNAHETLIWASKSDKSR-YVFNYASLKTFNDDLQM 188

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           RSDWL+PICSG+ERL+ ++G+K+HPTQKPEALL RI+++S++P D+ILDPFFG+GT+G +
Sbjct: 189 RSDWLLPICSGNERLKGENGQKIHPTQKPEALLYRIILASSRPDDVILDPFFGTGTTGVI 248

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           A+ LRR +IGIE    YI  A  RI   +      +   + KR +PRV F  L+E G I+
Sbjct: 249 ARHLRRHWIGIEQDPTYIKAAQARIDKAEVFDEALMGQASNKRKQPRVTFGCLMENGFIR 308

Query: 301 PGQILTNAQGNISATVCADGTLIS-GTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELH 359
           PG IL +++    A V  DG L S     GSIH++GA++  + +CNGW FW+FE+   L 
Sbjct: 309 PGHILYDSRRRFKAVVNVDGALQSADGRSGSIHKLGAQLQQAVSCNGWIFWHFEENNILL 368

Query: 360 SINTLRILVRKE 371
            ++ LR     E
Sbjct: 369 PLDILRQRYLAE 380


>gi|332188931|ref|ZP_08390632.1| DNA methylase family protein [Sphingomonas sp. S17]
 gi|332011042|gb|EGI53146.1| DNA methylase family protein [Sphingomonas sp. S17]
          Length = 379

 Score =  432 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 209/347 (60%), Positives = 259/347 (74%), Gaps = 3/347 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+I+ G+ I+ L  LP KSVD++FADPPYNLQL G+L+RPD S VDAVTD+WDKF +F A
Sbjct: 27  DQILMGDCIAALRSLPDKSVDMVFADPPYNLQLGGELFRPDGSHVDAVTDAWDKFDTFAA 86

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YDAFTRAWL  C RVLK NG+LWVIGSYHNIFR+GT +Q+L FWILNDI+WRKSNPMPNF
Sbjct: 87  YDAFTRAWLAECYRVLKDNGSLWVIGSYHNIFRVGTAVQDLGFWILNDIIWRKSNPMPNF 146

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWAS   KAK YTFNY ++K  N+++QMRSDW  PIC G ERL  KDG
Sbjct: 147 KGTRFTNAHETLIWASKGEKAK-YTFNYRSMKTLNDEIQMRSDWEFPICGGQERL-KKDG 204

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K+HPTQKPEALL RIL++ T+PGD+I DPFFG+GT+GAVAK+L R +IGIE +  Y   
Sbjct: 205 HKVHPTQKPEALLYRILLACTRPGDVIADPFFGTGTTGAVAKRLGRRWIGIEREPTYCAA 264

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A +RI +  PL    L  +   + +P+VAF  LVE G + PG  L +A+    ATV ADG
Sbjct: 265 AIERIEAALPLDESALATMQSPKAQPKVAFGTLVETGYLAPGMPLMDAKRKWRATVRADG 324

Query: 321 TLISG-TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRI 366
           +L+S   + GSIHR+G+ +    TCNGW FW++E  G L  I+ +R 
Sbjct: 325 SLLSDCGQAGSIHRLGSLLQNRPTCNGWTFWHYELEGALKPIDAMRQ 371


>gi|148292196|dbj|BAF62911.1| putative adenine DNA methyltransferase [uncultured bacterium]
          Length = 358

 Score =  431 bits (1109), Expect = e-119,   Method: Composition-based stats.
 Identities = 209/354 (59%), Positives = 264/354 (74%), Gaps = 2/354 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           KD II GN +  L  LP  SVDL+FADPPYNLQL+G L RPD S+VDAV D WDKF SF 
Sbjct: 3   KDVIICGNCVDQLAGLPDNSVDLVFADPPYNLQLSGNLTRPDQSVVDAVDDDWDKFDSFA 62

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD  + AWL  CRRVLK +G LWVIGSYHNIFR+G +LQ+L +WILND+VWRKSNPMPN
Sbjct: 63  AYDQLSEAWLRECRRVLKDDGALWVIGSYHNIFRLGRLLQDLGYWILNDVVWRKSNPMPN 122

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRGRRF NAHETLIWA+ S  +K YTFNYDA+KA NE VQMRSDW +PIC+G+ERL+++ 
Sbjct: 123 FRGRRFTNAHETLIWAAKSEASK-YTFNYDAMKALNEGVQMRSDWYMPICTGAERLKDQA 181

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K HPTQKPE LL+R+++SSTK GD ILDPFFG+GT+GAVA++L R +IGIE  +DY  
Sbjct: 182 GQKAHPTQKPENLLARVILSSTKRGDTILDPFFGTGTTGAVARRLGRHYIGIEQNEDYAK 241

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A +RIA+VQP+ +  +     KR +PRV F  LVE G +  G  L +   ++ A VCAD
Sbjct: 242 LAAERIAAVQPIVDDVILSTPEKRAQPRVPFGALVEGGWLAAGDTLFDKTKSVRARVCAD 301

Query: 320 GTLISG-TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           G+L++   + GSIH +GA +    +CNGW +W+  + G+  SI+ LR   RK +
Sbjct: 302 GSLVTDKAQKGSIHGLGATLQNQPSCNGWQYWHVTRDGKDVSIDLLRAEYRKSM 355


>gi|330993888|ref|ZP_08317820.1| Modification methylase SmeI [Gluconacetobacter sp. SXCC-1]
 gi|329759156|gb|EGG75668.1| Modification methylase SmeI [Gluconacetobacter sp. SXCC-1]
          Length = 362

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 203/355 (57%), Positives = 265/355 (74%), Gaps = 1/355 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D++++G+ + +++ LPA S+D +FADPPYNLQL G+L RPD S+VD V D WDKF+  +A
Sbjct: 7   DQVLRGDCVEMMKTLPAASIDCVFADPPYNLQLKGELRRPDDSIVDGVDDDWDKFTDLQA 66

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YDAFTRAWL   RRVL+ +GT+WVIGSYHNIFRIG +LQ+L FWILND++WRKSNPMPNF
Sbjct: 67  YDAFTRAWLTEARRVLRKDGTIWVIGSYHNIFRIGAILQDLGFWILNDVIWRKSNPMPNF 126

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RGRRF NAHETLIWA+    ++ Y FNY A+KA N+DVQMRSDW +P+C+G ERLRN+ G
Sbjct: 127 RGRRFTNAHETLIWAARGADSR-YRFNYQAMKALNDDVQMRSDWYLPLCTGGERLRNEHG 185

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            KLHPTQKPE+LL R+LV+ST   D++LDPF G+GT+ A+A++LRR FIGIE   DY + 
Sbjct: 186 LKLHPTQKPESLLHRVLVASTNVDDVVLDPFTGTGTTTAMARRLRRRFIGIERHPDYAEA 245

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  R    +PL    +     +R  PRV F LLVERG++  G +L + Q  + ATV  DG
Sbjct: 246 AIGRARREKPLPLDSVQTTPARRESPRVPFGLLVERGMVPAGTVLMDRQKRVRATVSPDG 305

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYNC 375
           TL+SG   GSIH++GA+++ + +CNGW FWYFE+ GEL  ++ LR  +R E    
Sbjct: 306 TLVSGRHRGSIHKMGAQLTNAPSCNGWTFWYFEREGELVQLDVLRGDIRAEQAAV 360


>gi|241761782|ref|ZP_04759868.1| DNA methylase N-4/N-6 domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241373696|gb|EER63256.1| DNA methylase N-4/N-6 domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 382

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 202/372 (54%), Positives = 265/372 (71%), Gaps = 2/372 (0%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           MS+++     E  +S     + I+ GN I +L+ LP  SVDLIFADPPYNLQL+G+L+RP
Sbjct: 10  MSEEDIGGDTELSDSPTLPLNSILAGNCIEILKTLPDNSVDLIFADPPYNLQLSGELFRP 69

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           + S VDAV ++WDKF +F AYD FT  WL    RVLK +GT+WVIGSYHNIFR+GT LQ+
Sbjct: 70  EGSRVDAVNNAWDKFDTFAAYDHFTCLWLKEAHRVLKEDGTIWVIGSYHNIFRVGTALQD 129

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
             FWILNDI+WRKSNPMPNF+GRRF NAHETLIWAS S K++ Y FNY +LK  N+D+QM
Sbjct: 130 QGFWILNDIIWRKSNPMPNFKGRRFTNAHETLIWASKSDKSR-YVFNYASLKTFNDDLQM 188

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           RSDWL+PICSG+ERL+ ++G+K+HPTQKPEALL RI+++S++P D+ILDPFFG+GT+G +
Sbjct: 189 RSDWLLPICSGNERLKGENGQKIHPTQKPEALLYRIILASSRPDDVILDPFFGTGTTGVI 248

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           A+ LRR +IGIE    YI  A  RI   +      +   + KR +PRV F  L+E G I+
Sbjct: 249 ARHLRRHWIGIEQDPTYIKAAQARIDKAEVFDEALMGQASNKRKQPRVTFGCLMENGFIR 308

Query: 301 PGQILTNAQGNISATVCADGTLIS-GTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELH 359
           PG IL +++    A V  DG L S     GSIH++GA++  + +CNGW FW+FE+   L 
Sbjct: 309 PGHILYDSRRRFKAVVNVDGALQSADGRSGSIHKLGAQLQQAVSCNGWIFWHFEENNILL 368

Query: 360 SINTLRILVRKE 371
            ++ LR     E
Sbjct: 369 PLDILRQRYLAE 380


>gi|312113930|ref|YP_004011526.1| DNA methylase N-4/N-6 domain protein [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219059|gb|ADP70427.1| DNA methylase N-4/N-6 domain protein [Rhodomicrobium vannielii ATCC
           17100]
          Length = 373

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 205/351 (58%), Positives = 270/351 (76%), Gaps = 2/351 (0%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I++G+ + +L ++P+ SVDL+FADPPYNLQL G+L RP+++ VD V  +WD+F+ F  YD
Sbjct: 18  ILQGDCLDILRRMPSASVDLVFADPPYNLQLGGELLRPNNTRVDGVDHAWDRFADFATYD 77

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F+RAWL  CRRVLKPNG LWVIG+YHNIFR+GT LQ+L FW++ND++W K+NPMPNF+G
Sbjct: 78  RFSRAWLSECRRVLKPNGALWVIGTYHNIFRLGTALQDLGFWMMNDVIWLKTNPMPNFKG 137

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
            RF NAHETLIWA+   KA+  TFNYD++KA N+D+QMRSDWLIPICSG ERLR+  G K
Sbjct: 138 TRFTNAHETLIWAARDEKARP-TFNYDSMKAFNDDLQMRSDWLIPICSGPERLRDDGGRK 196

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPEALL+R+L+++TKPGD++LDPFFG+GT+GAVAK LRR FIGIE   DY+  A+
Sbjct: 197 AHPTQKPEALLARVLMATTKPGDLVLDPFFGTGTTGAVAKLLRRRFIGIERDPDYVAAAS 256

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
            RIA+++P       ++T KR EPRV F +++ERG+++PG +L +A+  I A V AD +L
Sbjct: 257 ARIAAIEPCDAKAAALITSKRAEPRVPFGMVLERGMLRPGDVLFDAKAEIRAQVMADASL 316

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEK-LGELHSINTLRILVRKEL 372
           +     GSIH VGAK  G   CNGW FW+FE+    L  I+ LR+ VRK +
Sbjct: 317 MWNGTRGSIHSVGAKAQGRGACNGWTFWHFEQPKDGLAPIDLLRMEVRKTM 367


>gi|148654551|ref|YP_001274756.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus sp.
           RS-1]
 gi|148566661|gb|ABQ88806.1| DNA methylase N-4/N-6 domain protein [Roseiflexus sp. RS-1]
          Length = 373

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 196/353 (55%), Positives = 256/353 (72%), Gaps = 3/353 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++II+G+ + VL+  PAKSVDLIFADPPYNLQL  QL RP+ ++VD V D WD+F++   
Sbjct: 18  NEIIQGDCVEVLKTFPAKSVDLIFADPPYNLQLRNQLLRPNQTVVDGVDDEWDQFANVAE 77

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YDAFTR WL ACRRVLK +GT+WVIGSYHNIFRIGT++ +L +WILND++W K+NPMPNF
Sbjct: 78  YDAFTRNWLSACRRVLKDDGTIWVIGSYHNIFRIGTIMMDLGYWILNDVIWYKTNPMPNF 137

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG RFQNA ETLIWA  S + K YTFNY A+K  N++ QM++ W IP+C+G ER+   +G
Sbjct: 138 RGTRFQNATETLIWAKKSVEQKKYTFNYHAMKHLNDEKQMQNVWHIPLCTGPERI-KLNG 196

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K+H TQKPEALL R++++S+ PGD++LDPFFGSGT+GAVAKKL+R++IGIE++  YIDI
Sbjct: 197 KKVHSTQKPEALLYRVILASSNPGDVVLDPFFGSGTTGAVAKKLKRNYIGIELEPAYIDI 256

Query: 261 ATKRIASVQ-PLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           A KRI ++   L +    V   KRT PRV+F  L+E   I  GQ + +    + ATV AD
Sbjct: 257 ARKRIDTLPMSLLDETELVTPSKRTVPRVSFGQLIESHYITVGQKVFSKDRKVVATVKAD 316

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFE-KLGELHSINTLRILVRKE 371
             L+ G   GSIHR+ A        NGW +WY E + G + SI+ LR   R E
Sbjct: 317 SHLLWGNVTGSIHRIAALAQNKPAFNGWEYWYCEDQEGNVISIDALRERYRIE 369


>gi|170747153|ref|YP_001753413.1| DNA methylase N-4/N-6 domain-containing protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653675|gb|ACB22730.1| DNA methylase N-4/N-6 domain protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 368

 Score =  428 bits (1100), Expect = e-118,   Method: Composition-based stats.
 Identities = 212/355 (59%), Positives = 271/355 (76%), Gaps = 1/355 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL-NGQLYRPDHSLVDAVTDSWDKFSSFE 79
           D+++ G+ I+ +  LPA SVD +FADPPYNLQL +  L RPD S VDAV D WDKF++FE
Sbjct: 13  DQVLVGDCIAAMNALPASSVDCVFADPPYNLQLGDAGLLRPDQSRVDAVDDDWDKFATFE 72

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FTR WL ACRRV+KPN TLWVIGSYHNIFR+G+ LQ+L +WILNDIVWRK+NPMPN
Sbjct: 73  AYDTFTRDWLSACRRVMKPNATLWVIGSYHNIFRVGSALQDLGYWILNDIVWRKANPMPN 132

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+RF NAHETLIWAS S  +KGYTF+Y+ALK  NED+QMRSDW IP+C+G ERL++ +
Sbjct: 133 FRGKRFTNAHETLIWASRSADSKGYTFHYEALKGGNEDLQMRSDWFIPLCTGEERLKDAE 192

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K+HPTQKPEALL+R L+++T PGD++LDPFFG+GT+GAVAK+L R FIGIE +  Y +
Sbjct: 193 GRKVHPTQKPEALLARTLLAATNPGDVVLDPFFGTGTTGAVAKRLGRRFIGIEREATYAE 252

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A +RIA+V+ L    L V   KR EPRV F  ++E G I+PG+ +T+ +    ATV  D
Sbjct: 253 AARERIAAVETLSRAALMVAPTKRAEPRVPFLSVIEAGHIRPGETVTDERRRFRATVRPD 312

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           G L +G  +GSIH++GA V G   CNGW FW+ E+ G+   I+T R  +R+ + N
Sbjct: 313 GQLDNGLVIGSIHKIGALVQGLPACNGWTFWHVERGGKPVVIDTFRAGLRQAMAN 367


>gi|288962308|ref|YP_003452603.1| adenine-specific DNA-methyltransferase [Azospirillum sp. B510]
 gi|288914574|dbj|BAI76059.1| adenine-specific DNA-methyltransferase [Azospirillum sp. B510]
          Length = 360

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 203/357 (56%), Positives = 267/357 (74%), Gaps = 5/357 (1%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I+ G+ I+++  LP  SVDL+FADPPYNLQL G+L RP+H+ V  V D WDKF  FEA
Sbjct: 5   NRILVGDCIALMNDLPPASVDLVFADPPYNLQLGGELLRPNHTRVAGVDDEWDKFDDFEA 64

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR W+ A RR+LKP G+LWVIGSYHNIFR+G  LQNL FWILNDIVWRK+NPMPNF
Sbjct: 65  YDRFTRDWMTAARRILKPEGSLWVIGSYHNIFRVGATLQNLGFWILNDIVWRKTNPMPNF 124

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG RF NAHET+IWA+    A+ Y FNYDA+K  NED+QMRSDWL+PICSG ERLR+++G
Sbjct: 125 RGTRFANAHETMIWAALDKDAR-YRFNYDAMKNLNEDLQMRSDWLLPICSGGERLRDEEG 183

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K HPTQKPE+LL R+++SS++PGD++LDPFFG+GT+GAVAK+L R +IG+E    Y+  
Sbjct: 184 KKTHPTQKPESLLYRVILSSSRPGDVVLDPFFGTGTTGAVAKRLGRKWIGLERDDTYVKA 243

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  RI +V+   +  +     KR+ PR+ F  +VERGL++PG  L + +  ++A V ADG
Sbjct: 244 AQARIDAVEEAPDTAILDTPPKRSAPRIPFGWVVERGLLRPGSTLFDQRRRVAARVRADG 303

Query: 321 TLIS----GTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           TLI     G   GSIH+VGA ++G   CNGW FW++E+  +L  I+ LR  +R E++
Sbjct: 304 TLIGSGPRGDHRGSIHQVGAAMAGLPACNGWTFWHYEEGEDLRPIDVLRERIRSEMH 360


>gi|296444555|ref|ZP_06886519.1| DNA methylase N-4/N-6 domain protein [Methylosinus trichosporium
           OB3b]
 gi|296257823|gb|EFH04886.1| DNA methylase N-4/N-6 domain protein [Methylosinus trichosporium
           OB3b]
          Length = 390

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 201/347 (57%), Positives = 259/347 (74%), Gaps = 1/347 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           ++ ++ G+++ ++  LPA+SVDL+FADPPYNLQL   L RPD S VDAV D WDKF+ F 
Sbjct: 32  RNSVLLGDNVPLMAGLPAESVDLVFADPPYNLQLANALTRPDQSRVDAVDDDWDKFADFS 91

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD+FTR WL A RRV+KPN T++VIGSYHNIFR+G M+Q+L FWILNDIVWRK+NPMPN
Sbjct: 92  AYDSFTRDWLAAARRVMKPNATIFVIGSYHNIFRVGAMMQDLGFWILNDIVWRKTNPMPN 151

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRGRRF NAHETLIWA+     + YTF+Y+ALKA NED QMRSDWL+PIC+G ERL++  
Sbjct: 152 FRGRRFTNAHETLIWAARDSSCRSYTFHYEALKAGNEDCQMRSDWLLPICTGGERLKDAA 211

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K HPTQKPEALL+R++++++ PGD++LDPFFGSGT+GAVAK+L R ++G+E    Y  
Sbjct: 212 GRKTHPTQKPEALLARVMLAASNPGDLVLDPFFGSGTTGAVAKRLGRDYLGLERDPAYAA 271

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A +RIA+++PL +  +     KR+ PR+AF  LVE GL+  G +LT+  G   A V  D
Sbjct: 272 AARERIAAIEPLPDEAIAAAPTKRSAPRIAFASLVESGLVAAGAMLTDLHGRHRAMVRPD 331

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGE-LHSINTLR 365
           G L  G  +GSIH++GA   G   CNGW FW+FE  G  L  I+ LR
Sbjct: 332 GALALGQIVGSIHKIGALAQGLPACNGWTFWHFESGGGALAPIDDLR 378


>gi|170739049|ref|YP_001767704.1| DNA methylase N-4/N-6 domain-containing protein [Methylobacterium
           sp. 4-46]
 gi|168193323|gb|ACA15270.1| DNA methylase N-4/N-6 domain protein [Methylobacterium sp. 4-46]
          Length = 396

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 217/354 (61%), Positives = 266/354 (75%), Gaps = 2/354 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL-NGQLYRPDHSLVDAVTDSWDKFSSFE 79
           D++I+G+ ++ L+ LP  SVDL+FADPPYNLQL    L RPD S VDAV D WD+F+SFE
Sbjct: 41  DEVIQGDCLAALDALPPSSVDLVFADPPYNLQLGEAALLRPDQSAVDAVDDDWDQFASFE 100

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYDAFTR WL ACRRV+KPN TLWVIGSYHNIFR+G+ LQ+L FWILNDIVWRK+NPMPN
Sbjct: 101 AYDAFTRQWLQACRRVMKPNATLWVIGSYHNIFRVGSALQDLGFWILNDIVWRKANPMPN 160

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+RF NAHETLIWAS S + KGYTF+Y++LK  N+D+QMRSDW +P+C+G ERL+ +D
Sbjct: 161 FRGKRFTNAHETLIWASRSAQ-KGYTFHYESLKGGNDDLQMRSDWFLPLCTGEERLKGED 219

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G KLHPTQKPEALL+R ++S++ PGD++LDPFFG+GT+GAVAK+L R FIGIE +  Y  
Sbjct: 220 GRKLHPTQKPEALLARTILSASNPGDVVLDPFFGTGTTGAVAKRLGRRFIGIERESAYAA 279

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A  RIA+V+PL    L     KR EPRV F  L+E GLI PG  LT+ +    A V  D
Sbjct: 280 AARARIAAVEPLSTAALLTAPAKRAEPRVPFLNLIEAGLIAPGSQLTDERRRFRALVRPD 339

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           GTL  G   GSIH++GA V G   CNGW FW+ E+ G L  I+ LR  +R  L 
Sbjct: 340 GTLSVGPACGSIHKIGALVQGLPACNGWTFWHTERGGRLVVIDALRAQIRAGLE 393


>gi|91762760|ref|ZP_01264725.1| site-specific DNA methyltransferase [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91718562|gb|EAS85212.1| site-specific DNA methyltransferase [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 356

 Score =  425 bits (1092), Expect = e-117,   Method: Composition-based stats.
 Identities = 190/351 (54%), Positives = 254/351 (72%), Gaps = 2/351 (0%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +K+KII G+S+  L+K+P+++ DL+FADPPYNLQL   L RPD S V AV D WD+F S
Sbjct: 4   NFKNKIINGDSLEELKKIPSETFDLVFADPPYNLQLKNSLTRPDRSKVSAVNDKWDQFES 63

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           F+ YD FT AWL  CRR+LK +G +WVIGSYHNIFR+GT +QNL FWILND++W K+NPM
Sbjct: 64  FKKYDDFTVAWLSECRRILKKDGAIWVIGSYHNIFRVGTAIQNLGFWILNDVIWNKNNPM 123

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PNFRG RF NAHETLIWAS S K+K YTFNY +LK  N+D+QMRS+W +PIC+G+ERL  
Sbjct: 124 PNFRGTRFTNAHETLIWASKSEKSK-YTFNYQSLKCLNDDLQMRSNWNLPICNGAERL-K 181

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K+G+K+H TQKPE+LL R+L++S+   D+ILDPF GSGT+  VAKKL R + GIE ++ Y
Sbjct: 182 KNGKKVHSTQKPESLLHRVLLASSNKDDLILDPFLGSGTTATVAKKLGRKYYGIEKEKTY 241

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
              A +R+ + +PL +  L  L   R++PR+ F  LVE G+I+PG  + + +  I A + 
Sbjct: 242 FKAAEERLKNTKPLEDNFLDTLKNNRSKPRIPFGSLVELGIIKPGTSIFDQKKKIVAKIM 301

Query: 318 ADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
           ADG++      GSIH+V A + GSE+CNGW +W+    G    I+ LR  +
Sbjct: 302 ADGSIKHNQAEGSIHKVAATILGSESCNGWTYWHCTVNGVSVPIDNLRQRL 352


>gi|240139930|ref|YP_002964407.1| site-specific DNA-methyltransferase (adenine-specific)
           [Methylobacterium extorquens AM1]
 gi|240009904|gb|ACS41130.1| site-specific DNA-methyltransferase (adenine-specific)
           [Methylobacterium extorquens AM1]
          Length = 398

 Score =  424 bits (1091), Expect = e-117,   Method: Composition-based stats.
 Identities = 216/352 (61%), Positives = 270/352 (76%), Gaps = 2/352 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL-NGQLYRPDHSLVDAVTDSWDKFSSFE 79
           D+I+ G+ I+ +++LPA+SVD +FADPPYNLQL    L RPD S+VDAV D WDKFSSF 
Sbjct: 45  DEILIGDCIAAMDRLPAESVDCVFADPPYNLQLGEAGLTRPDQSVVDAVDDDWDKFSSFS 104

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FTRAWL A RRV+KPNGTLWVIGSYHNIFR+G+ LQ+L +WILNDIVWRK+NPMPN
Sbjct: 105 AYDDFTRAWLKAARRVMKPNGTLWVIGSYHNIFRVGSALQDLGYWILNDIVWRKANPMPN 164

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+RF NAHETLIWAS SP+AK YTF+YDALKA NED+QMRSDW IP+C+G ERL+++ 
Sbjct: 165 FRGKRFTNAHETLIWASRSPQAK-YTFHYDALKAGNEDLQMRSDWFIPLCTGEERLKDEA 223

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K+HPTQKPEALL+R L+++T PGD++LDPFFG+GT+GAVAK+L R FIG E    Y  
Sbjct: 224 GRKVHPTQKPEALLARTLLAATNPGDVVLDPFFGTGTTGAVAKRLGRHFIGCERDPTYAT 283

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A  RI S++ L    L + T KR+EPR+ F  +VE G ++PG+ LT+ +    ATV  D
Sbjct: 284 AARARIDSIETLSAASLALATPKRSEPRIPFLSVVEAGHVRPGETLTDERRRFRATVRPD 343

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           G L  G  +GSIH+VGA V G   CNGW FW+ E+ G+L  I+  R  +R +
Sbjct: 344 GQLSVGPAMGSIHKVGALVQGLPACNGWTFWHAERGGKLVCIDDFRTEMRGQ 395


>gi|163852596|ref|YP_001640639.1| DNA methylase N-4/N-6 domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|163664201|gb|ABY31568.1| DNA methylase N-4/N-6 domain protein [Methylobacterium extorquens
           PA1]
          Length = 398

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 215/352 (61%), Positives = 268/352 (76%), Gaps = 2/352 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL-NGQLYRPDHSLVDAVTDSWDKFSSFE 79
           D+I+ G+ I+ +++LPA+SVD +FADPPYNLQL    L RPD S+VDAV D WDKFSSF 
Sbjct: 45  DEILIGDCIAAMDRLPAESVDCVFADPPYNLQLGEAGLTRPDQSVVDAVDDDWDKFSSFS 104

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FTRAWL A RRV+KPN TLWVIGSYHNIFR+G+ LQ+L +WILNDIVWRK+NPMPN
Sbjct: 105 AYDDFTRAWLKAARRVMKPNATLWVIGSYHNIFRVGSALQDLGYWILNDIVWRKANPMPN 164

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+RF NAHETLIWAS SP+AK YTF+YDALKA NED+QMRSDW IP+C+G ERL+++ 
Sbjct: 165 FRGKRFTNAHETLIWASRSPQAK-YTFHYDALKAGNEDLQMRSDWFIPLCTGEERLKDEA 223

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K+HPTQKPEALL+R L+++T PGD++LDPFFG+GT+GAVAK+L R FIG E    Y  
Sbjct: 224 GRKVHPTQKPEALLARTLLAATNPGDVVLDPFFGTGTTGAVAKRLGRHFIGCERDPTYAT 283

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A  RI S++ L    L + T KR EPR+ F  +VE G ++PG+ LT+ +    ATV  D
Sbjct: 284 AARARIDSIETLSAASLALATPKRAEPRIPFLSVVEAGHVRPGETLTDERRRFRATVRPD 343

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           G L  G  +GSIH+VGA V G   CNGW FW+ E+ G+L  I+  R  +R +
Sbjct: 344 GQLSVGPAMGSIHKVGALVQGLPACNGWTFWHAERGGKLVCIDDFRTEMRGQ 395


>gi|304319996|ref|YP_003853639.1| modification methylase [Parvularcula bermudensis HTCC2503]
 gi|303298899|gb|ADM08498.1| modification methylase [Parvularcula bermudensis HTCC2503]
          Length = 344

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 194/343 (56%), Positives = 254/343 (74%), Gaps = 2/343 (0%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           ++ +P  SVDLIFADPPYNLQL   L RPD S VD V D+WD+F SF AYDAF RAWL  
Sbjct: 1   MKMIPDGSVDLIFADPPYNLQLGDGLTRPDQSTVDGVNDAWDQFGSFAAYDAFCRAWLSE 60

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
            RR+LKP+G +WVIG+YHNIFR+G+++Q+L +WI ND+VW K+NPMPNFRG R QNAHET
Sbjct: 61  ARRLLKPDGAIWVIGTYHNIFRLGSIIQDLEYWIQNDVVWVKTNPMPNFRGTRLQNAHET 120

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           LIWA+   +++  TFNY +LK AN+D+QMRSDW  P+C+G ERL+N  G+KLHPTQKPEA
Sbjct: 121 LIWAARGKESRP-TFNYHSLKTANDDLQMRSDWTFPLCTGQERLKN-GGKKLHPTQKPEA 178

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           LL RIL+ +T PGD++LDPFFG+GT+GAVAK+L R +IGIE +  YID A +RIA+++P 
Sbjct: 179 LLHRILLGTTNPGDLVLDPFFGTGTTGAVAKRLGRHYIGIEREAAYIDAAAERIAAIEPE 238

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSI 331
               +T +   R E R+ F  LVE GL+ PG +L  A+    A V ADG+L +    GSI
Sbjct: 239 AAEMVTPMPSPRREARIPFGRLVEDGLLSPGTVLYCAKRRYRAKVKADGSLATPGATGSI 298

Query: 332 HRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
           H++GA +  + +CNGW FW+ E+ G L  I+TLR  VR ++ +
Sbjct: 299 HKIGAHLQNAPSCNGWTFWHVERQGRLLPIDTLRQTVRAQMAS 341


>gi|254456346|ref|ZP_05069775.1| site-specific DNA methyltransferase [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083348|gb|EDZ60774.1| site-specific DNA methyltransferase [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 356

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 192/351 (54%), Positives = 259/351 (73%), Gaps = 2/351 (0%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           ++K+KII G+S+  L+K+P+++ DL+FADPPYNLQL  +L RPD S V AV D WD+F +
Sbjct: 4   DFKNKIINGDSLEELKKIPSETFDLVFADPPYNLQLKNKLTRPDRSKVSAVDDKWDQFEN 63

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           F+ YD FT AWL  C+R+LK NG +WVIGSYHNIFR+GT +QNL FWILND++W K+NPM
Sbjct: 64  FKKYDEFTYAWLTECKRILKKNGAIWVIGSYHNIFRVGTTIQNLGFWILNDVIWNKNNPM 123

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PNFRG RF NAHETLIWAS S K+K YTFNY +LK  N+D+QMRS+W +PIC+G+ERL  
Sbjct: 124 PNFRGTRFTNAHETLIWASKSEKSK-YTFNYQSLKCLNDDLQMRSNWNLPICNGTERL-K 181

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K+G+K+H TQKPEALL RIL++S+   D+ILDPF GSGT+  VAKKL R+F GIE ++ Y
Sbjct: 182 KNGKKVHSTQKPEALLHRILLASSNKDDMILDPFLGSGTTATVAKKLGRNFYGIEKEKTY 241

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
              A KRI + +P  +  L  L   R++PR+ F  LVE G+I+PG  + + +  I+A + 
Sbjct: 242 FKAAEKRIKNAKPFEDNFLDTLKNNRSKPRIPFGSLVELGIIKPGTNIFDNKKKITARIM 301

Query: 318 ADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
           ADG++      GSIH+V A + G+E+CNGW +W+ +  G  + I+ LR  +
Sbjct: 302 ADGSIKHNQAEGSIHKVAATILGAESCNGWTYWHCDINGRTYPIDYLRQRL 352


>gi|71082817|ref|YP_265536.1| site-specific DNA methyltransferase [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71061930|gb|AAZ20933.1| site-specific DNA methyltransferase [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 356

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 191/351 (54%), Positives = 255/351 (72%), Gaps = 2/351 (0%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +K+KII G+S+  L+K+P+++ DL+FADPPYNLQL   L RPD S V+AV D WD F S
Sbjct: 4   NFKNKIINGDSLEELKKIPSETFDLVFADPPYNLQLKNSLTRPDRSKVNAVNDKWDHFES 63

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           F+ YD FT AWL  C+R+LK +G +WVIGSYHNIFR+GT +QNL FWILND++W K+NPM
Sbjct: 64  FKKYDEFTVAWLSECKRILKKDGAIWVIGSYHNIFRVGTAIQNLGFWILNDVIWNKNNPM 123

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PNFRG RF NAHETLIWAS S K+K YTFNY +LK  N+D+QMRSDW +PIC+G+ERL  
Sbjct: 124 PNFRGTRFTNAHETLIWASKSEKSK-YTFNYQSLKCLNDDLQMRSDWNLPICNGAERL-K 181

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K+G+K+H TQKPE+LL R+L++S+  GD+ILDPF GSGT+  VAKKL R + GIE ++ Y
Sbjct: 182 KNGKKVHSTQKPESLLHRVLLASSNKGDMILDPFLGSGTTATVAKKLGRKYYGIEKEKVY 241

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
              A +R+ + +PL +  L  L   R++PR+ F  LVE G+I+PG  + + +  I A + 
Sbjct: 242 FKAAEERLKNTKPLEDNFLDTLKNNRSKPRIPFGSLVELGIIKPGTSIFDQKKKIVAKIM 301

Query: 318 ADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
           ADG++      GSIH+V A + GSE+CNGW +W+    G    I+ LR  +
Sbjct: 302 ADGSIKHNQAEGSIHKVAATILGSESCNGWTYWHCTVNGVSVPIDNLRQRL 352


>gi|254562354|ref|YP_003069449.1| site-specific DNA-methyltransferase [Methylobacterium extorquens
           DM4]
 gi|254269632|emb|CAX25603.1| site-specific DNA-methyltransferase (adenine-specific)
           [Methylobacterium extorquens DM4]
          Length = 398

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 214/352 (60%), Positives = 267/352 (75%), Gaps = 2/352 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL-NGQLYRPDHSLVDAVTDSWDKFSSFE 79
           D+I+ G+ I+ +++LPA+SVD +FADPPYNLQL    L RPD S+VDAV D WDKFSSF 
Sbjct: 45  DEILIGDCIAAMDRLPAESVDCVFADPPYNLQLGEAGLTRPDQSVVDAVDDDWDKFSSFS 104

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FTRAWL A RRV+KPN TLWVIGSYHNIFR+G+ LQ+L +WILNDIVWRK+NPMPN
Sbjct: 105 AYDDFTRAWLKAARRVMKPNATLWVIGSYHNIFRVGSALQDLGYWILNDIVWRKANPMPN 164

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+RF NAHETLIWAS SP+AK YTF+YDALKA NED+QMRSDW IP+C+G ERL+++ 
Sbjct: 165 FRGKRFTNAHETLIWASRSPQAK-YTFHYDALKAGNEDLQMRSDWFIPLCTGEERLKDEA 223

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K+HPTQKPEALL+R L+++T PGD++LDPFFG+GT+GAVAK+L R FIG E    Y  
Sbjct: 224 GRKVHPTQKPEALLARTLLAATNPGDVVLDPFFGTGTTGAVAKRLGRHFIGCERDPTYAT 283

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A  RI S++ L    L +   KR EPR+ F  +VE G ++PG+ LT+ +    ATV  D
Sbjct: 284 AARARIDSIETLSAASLALAMPKRAEPRIPFLSVVEAGHVRPGETLTDERRRFRATVRPD 343

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           G L  G  +GSIH+VGA V G   CNGW FW+ E+ G+L  I+  R  +R +
Sbjct: 344 GQLSVGPAMGSIHKVGALVQGLPACNGWTFWHAERGGKLVCIDDFRTEMRGQ 395


>gi|156741987|ref|YP_001432116.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156233315|gb|ABU58098.1| DNA methylase N-4/N-6 domain protein [Roseiflexus castenholzii DSM
           13941]
          Length = 370

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 184/351 (52%), Positives = 244/351 (69%), Gaps = 3/351 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + II+G+ I VL+  P +SVDLIFADPPYNLQL   L RPD ++VD V D+WD+F   + 
Sbjct: 14  NAIIQGDCIQVLQMFPEQSVDLIFADPPYNLQLRHALLRPDQTVVDGVDDAWDRFEDVQE 73

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YDAFTRAWL ACRRVLK +GT+WVIG+YHNIFR+G ++ +L +WILND++W K+NPMPNF
Sbjct: 74  YDAFTRAWLGACRRVLKDDGTIWVIGTYHNIFRVGAIMMDLGYWILNDVIWHKTNPMPNF 133

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG RFQNA ETLIWA  S   K YTFNY A+K  NE+ QM++ W +P+C+G+ER+   +G
Sbjct: 134 RGVRFQNATETLIWAKKSADQKKYTFNYHAMKHLNEEKQMQNVWHLPLCTGAERV-KING 192

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K H TQKPEALL R+++SS+ PGD++LDPFFGSGT+G VA++L+R +IGIE+   Y++I
Sbjct: 193 KKAHSTQKPEALLYRVILSSSNPGDLVLDPFFGSGTTGVVARRLKRHYIGIELDPAYVEI 252

Query: 261 ATKRIASVQ-PLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           A  RI      + +  +     KR  PRV F  LVE   ++ GQ L ++  N+ A V AD
Sbjct: 253 ARTRIEKTPVSVCDDAMLATRSKRDMPRVGFGQLVEAQYLRVGQNLYSSDRNVVAIVRAD 312

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKL-GELHSINTLRILVR 369
             L  G    SIHR+ A        NGW +W++E   G L SI++LR   R
Sbjct: 313 SQLQWGNITSSIHRIAALAQHKPAFNGWEYWHYEDQAGRLVSIDSLREQYR 363


>gi|218531437|ref|YP_002422253.1| DNA methylase N-4/N-6 domain protein [Methylobacterium
           chloromethanicum CM4]
 gi|218523740|gb|ACK84325.1| DNA methylase N-4/N-6 domain protein [Methylobacterium
           chloromethanicum CM4]
          Length = 398

 Score =  422 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 214/352 (60%), Positives = 268/352 (76%), Gaps = 2/352 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL-NGQLYRPDHSLVDAVTDSWDKFSSFE 79
           D+I+ G+ I+ +++LPA+SVD +FADPPYNLQL    L RPD S+VDAV D WDKFSSF 
Sbjct: 45  DEILIGDCIAAMDRLPAESVDCVFADPPYNLQLGEAGLTRPDQSVVDAVDDDWDKFSSFS 104

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FTRAWL A RRV+KPN TLWVIGSYHNIFR+G+ LQ+L +WILNDIVWRK+NPMPN
Sbjct: 105 AYDDFTRAWLKAARRVMKPNATLWVIGSYHNIFRVGSALQDLGYWILNDIVWRKANPMPN 164

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+RF NAHETLIWAS SP+AK YTF+YDALKA NED+QMRSDW IP+C+G ERL+++ 
Sbjct: 165 FRGKRFTNAHETLIWASRSPQAK-YTFHYDALKAGNEDLQMRSDWFIPLCTGEERLKDEA 223

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K+HPTQKPEALL+R L+++T PGD++LDPFFG+GT+GAVAK+L R FIG E    Y  
Sbjct: 224 GRKVHPTQKPEALLARTLLAATNPGDVVLDPFFGTGTTGAVAKRLGRHFIGCERDPTYAT 283

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A  RI  ++ L    L + T KR+EPR+ F  +VE G ++PG+ LT+ +    ATV  D
Sbjct: 284 AARARIDGIETLSAASLALATPKRSEPRIPFLSVVEAGHVRPGETLTDERRRFRATVRPD 343

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           G L  G  +GSIH+VGA V G   CNGW FW+ E+ G+L  I+  R  +R +
Sbjct: 344 GQLSVGPAMGSIHKVGALVQGLPACNGWTFWHAERSGKLVCIDDFRTEMRGQ 395


>gi|162149132|ref|YP_001603593.1| DNA methylase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209545124|ref|YP_002277353.1| DNA methylase N-4/N-6 domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787709|emb|CAP57305.1| putative DNA methylase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532801|gb|ACI52738.1| DNA methylase N-4/N-6 domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 370

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 197/347 (56%), Positives = 257/347 (74%), Gaps = 1/347 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+I++G+ + +++ LP  S+D IFADPPYNLQL G+L RPD S+VD V D WDKFS    
Sbjct: 12  DQILRGDCVELMQTLPTGSIDCIFADPPYNLQLRGELRRPDDSVVDGVDDDWDKFSDLAE 71

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTRAWL   RR+L+ +GT+WVIGSYHNIFRIG +LQ+L FWILND++WRKSNPMPNF
Sbjct: 72  YDRFTRAWLGEARRLLRKDGTIWVIGSYHNIFRIGAILQDLGFWILNDVIWRKSNPMPNF 131

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RGRRF NAHETLIWA+    ++ Y FNY A+KA N+DVQMRSDW +P+C+G ERLRN  G
Sbjct: 132 RGRRFTNAHETLIWAARGADSR-YRFNYQAMKALNDDVQMRSDWYLPLCTGGERLRNSHG 190

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            KLHPTQKPE+LL R+LV+ST   DI+LDPF G+GT+ A+A++LRR FIGIE   DY + 
Sbjct: 191 LKLHPTQKPESLLHRVLVASTNVDDIVLDPFAGTGTTTAMARRLRRRFIGIERHPDYAEA 250

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A  R    +P+    +     KR  PRV F  LVERGL+  G ++ +    +SATV  DG
Sbjct: 251 AIGRARRERPVPLDSVLTTPAKRETPRVPFGSLVERGLLPVGTVMYDRHQRVSATVAPDG 310

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRIL 367
           TL+SGT+ GSIH++GA ++ + +CNGW FW+ ++ G++  ++TLR  
Sbjct: 311 TLVSGTQRGSIHKLGALLTNAPSCNGWTFWHLQRDGQMIPLDTLRNE 357


>gi|148260450|ref|YP_001234577.1| DNA methylase N-4/N-6 domain-containing protein [Acidiphilium
           cryptum JF-5]
 gi|146402131|gb|ABQ30658.1| DNA methylase N-4/N-6 domain protein [Acidiphilium cryptum JF-5]
          Length = 360

 Score =  418 bits (1074), Expect = e-115,   Method: Composition-based stats.
 Identities = 186/349 (53%), Positives = 256/349 (73%), Gaps = 1/349 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+++ G+++ ++  LP  S+D +FADPPYNLQL G+L RPD S+VD V D WDKF+ F A
Sbjct: 12  DQLLLGDAVEMMRMLPDASIDCVFADPPYNLQLRGELRRPDDSVVDGVDDDWDKFTDFAA 71

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD F+RAWL   RR++  + T+WVIGSYHNIFR+G ++Q+L FWILND++WRK+NPMPNF
Sbjct: 72  YDEFSRAWLSEARRLMHKDATIWVIGSYHNIFRLGAIMQDLGFWILNDVIWRKTNPMPNF 131

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RGRRF NAHETLIWA+  PK++ Y FNY A+K+ N+D QMRSDW IP+C+G ERLRN+ G
Sbjct: 132 RGRRFTNAHETLIWAAREPKSR-YRFNYQAMKSLNDDTQMRSDWTIPLCTGGERLRNQHG 190

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            KLHPTQKPEALL R+++++T P D++LDPF G+ T+  VAK+L R FIGIE    Y++ 
Sbjct: 191 LKLHPTQKPEALLHRVILAATNPDDVVLDPFSGTATTATVAKRLNRHFIGIERHPAYVEA 250

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
              R+  ++         +  +R  PR+AF +LVERGL+ PG +L +    +SATV AD 
Sbjct: 251 GWARLREMRAAPAHLTRPMPSRREAPRIAFGVLVERGLVPPGTLLHDRLRRVSATVAADA 310

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVR 369
           ++I+G   GSIH+VGA V  + +CNGW FW+ E+ G L +++ +R  +R
Sbjct: 311 SIIAGAHRGSIHQVGAAVQNAASCNGWTFWHIEREGRLVALDHVRETLR 359


>gi|326403643|ref|YP_004283725.1| hypothetical protein ACMV_14960 [Acidiphilium multivorum AIU301]
 gi|325050505|dbj|BAJ80843.1| hypothetical protein ACMV_14960 [Acidiphilium multivorum AIU301]
          Length = 358

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 186/349 (53%), Positives = 256/349 (73%), Gaps = 1/349 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+++ G+++ ++  LP  S+D +FADPPYNLQL G+L RPD S+VD V D WDKF+ F A
Sbjct: 10  DQLLLGDAVEMMRMLPDASIDCVFADPPYNLQLRGELRRPDDSVVDGVDDDWDKFTDFAA 69

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD F+RAWL   RR++  + T+WVIGSYHNIFR+G ++Q+L FWILND++WRK+NPMPNF
Sbjct: 70  YDEFSRAWLSEARRLMHKDATIWVIGSYHNIFRLGAIMQDLGFWILNDVIWRKTNPMPNF 129

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RGRRF NAHETLIWA+  PK++ Y FNY A+K+ N+D QMRSDW IP+C+G ERLRN+ G
Sbjct: 130 RGRRFTNAHETLIWAAREPKSR-YRFNYQAMKSLNDDTQMRSDWTIPLCTGGERLRNQHG 188

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            KLHPTQKPEALL R+++++T P D++LDPF G+ T+  VAK+L R FIGIE    Y++ 
Sbjct: 189 LKLHPTQKPEALLHRVILAATNPDDVVLDPFSGTATTATVAKRLNRHFIGIERHPAYVEA 248

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
              R+  ++         +  +R  PR+AF +LVERGL+ PG +L +    +SATV AD 
Sbjct: 249 GWARLREMRAAPAHLTRPMPSRREAPRIAFGVLVERGLVPPGTLLHDRLRRVSATVAADA 308

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVR 369
           ++I+G   GSIH+VGA V  + +CNGW FW+ E+ G L +++ +R  +R
Sbjct: 309 SIIAGAHRGSIHQVGAAVQNAASCNGWTFWHIEREGRLVALDHVRETLR 357


>gi|188582617|ref|YP_001926062.1| DNA methylase N-4/N-6 domain protein [Methylobacterium populi
           BJ001]
 gi|179346115|gb|ACB81527.1| DNA methylase N-4/N-6 domain protein [Methylobacterium populi
           BJ001]
          Length = 370

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 212/351 (60%), Positives = 265/351 (75%), Gaps = 2/351 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL-NGQLYRPDHSLVDAVTDSWDKFSSFE 79
           D+I+ G+ I+ +++LPA+SVD +FADPPYNLQL    L RPD S+VDAV D WDKFSSF 
Sbjct: 17  DEILIGDCIAAMDRLPAESVDCVFADPPYNLQLGEAGLTRPDQSVVDAVDDDWDKFSSFA 76

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FTRAWL A RRV+KPN TLWVIGSYHNIFR+G+ LQ+L +WILNDIVWRK+NPMPN
Sbjct: 77  AYDDFTRAWLKAARRVMKPNATLWVIGSYHNIFRVGSALQDLGYWILNDIVWRKANPMPN 136

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG+RF NAHETLIWAS SP+AK YTF+YDALKA NED+QMRSDW IP+C+G ERL+++ 
Sbjct: 137 FRGKRFTNAHETLIWASRSPQAK-YTFHYDALKAGNEDLQMRSDWFIPLCTGEERLKDEA 195

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K+HPTQKPEALL+R L+++T PGD++LDPFFG+GT+GAVA++L R FIG E    Y  
Sbjct: 196 GRKVHPTQKPEALLARTLLAATNPGDVVLDPFFGTGTTGAVARRLGRHFIGCERDPTYAA 255

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A  RI  ++ L    L + T KR EPR+ F  +VE G ++ G+ LT+ +    ATV  D
Sbjct: 256 AARTRIDGIETLSAASLALATPKRAEPRIPFLSVVEAGHVRAGETLTDERRRFRATVRPD 315

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRK 370
           G L  G  +GSIH+VGA V G   CNGW FW+ E+ G+L  I+  R  +R 
Sbjct: 316 GQLSVGPAMGSIHKVGALVQGLPACNGWTFWHAERGGKLICIDDYRSEMRA 366


>gi|16082180|ref|NP_394624.1| adenine specific DNA methyltransferase [Thermoplasma acidophilum
           DSM 1728]
 gi|10640479|emb|CAC12293.1| probable adenine specific DNA methyltransferase [Thermoplasma
           acidophilum]
          Length = 381

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 187/353 (52%), Positives = 250/353 (70%), Gaps = 3/353 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + +I G+SI +++++P  SVDLIFADPPYNLQL  +LYRP+ + V+ V++ WDKF SF+ 
Sbjct: 25  NNVISGDSIEIMKQIPDNSVDLIFADPPYNLQLENELYRPNETKVNGVSEDWDKFRSFQD 84

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FT  WL  C+R+LK +GT+WVIG+YHNIFR+G ++Q+L FWILNDIVW K+NPMPNF
Sbjct: 85  YDDFTLNWLSQCKRILKESGTIWVIGTYHNIFRVGKIMQDLGFWILNDIVWIKTNPMPNF 144

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           +G RF NAHETLIWAS   ++K YTFNY  +KA N+D+QMRSDW IPIC G ER+   +G
Sbjct: 145 KGTRFNNAHETLIWASKDKESK-YTFNYKTMKAYNDDLQMRSDWYIPICQGDERI-KING 202

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +KLHPTQKPEALL RI+ +++KPGDI+LDPF G+GT+  VAKKL RSFIGIE +  Y+D 
Sbjct: 203 QKLHPTQKPEALLYRIITATSKPGDIVLDPFAGTGTTLVVAKKLGRSFIGIEKEPLYVDA 262

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
             +R+ +       +L     +    RV F  L+E G ++ G+ L +  G   A V A+G
Sbjct: 263 CRERLKNTASYQQ-KLLDYPLEIRPKRVPFGSLIENGYVKAGEYLYSPDGEARALVLANG 321

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
           TL    + GSIH++ A +      NGW FWY ++ G+L SIN LR  + K+ Y
Sbjct: 322 TLSYEDKYGSIHKISAMILNKPANNGWAFWYVKRDGKLVSINDLRQKLLKDQY 374


>gi|262276831|ref|ZP_06054624.1| modification methylase CcrMI (Adenine-specificmethyltransferase
           CcrMI) (M.CcrMI) [alpha proteobacterium HIMB114]
 gi|262223934|gb|EEY74393.1| modification methylase CcrMI (Adenine-specificmethyltransferase
           CcrMI) (M.CcrMI) [alpha proteobacterium HIMB114]
          Length = 353

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 181/351 (51%), Positives = 252/351 (71%), Gaps = 2/351 (0%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++   + +  L+++ ++SVDLIFADPPYNLQL  +L+RPD S V AV D WDKF SF+ Y
Sbjct: 5   ELYNLDCLGKLKEIESESVDLIFADPPYNLQLKNKLFRPDASKVSAVNDYWDKFDSFKTY 64

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FT +WL  C+R+LK NG++WVIGSYHNIFR+G ++Q+ ++WILND++W K NPMPNF+
Sbjct: 65  DDFTNSWLKECKRILKKNGSIWVIGSYHNIFRVGKLIQDNSYWILNDVIWNKRNPMPNFK 124

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G R  NAHETLIWA+ S K+K YTFNY ++K  NED Q+RSDW IPIC+GSER+ +K+ +
Sbjct: 125 GTRLTNAHETLIWAAKSEKSK-YTFNYHSMKTFNEDKQLRSDWDIPICNGSERITSKN-K 182

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+H TQKPEALL R+L+ ++   DI+LDPF G+GT+GAVAKKL R+FIGIE  + Y   A
Sbjct: 183 KIHSTQKPEALLYRVLLCASNKNDIVLDPFMGTGTTGAVAKKLGRNFIGIEKDKKYFKAA 242

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
            +RI  ++ +       +T K+ E R+ F  LVE G+++PG  L + +    A V +DG+
Sbjct: 243 EQRIKRIKEIDENFNIPMTNKKKEKRIPFGYLVETGIVEPGLNLFDLKKRYKAKVMSDGS 302

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           +      GSIH+VGA++ G  +CNGW++W+F   G+L  I+ LR  +R  L
Sbjct: 303 IYCNKIQGSIHKVGAEIQGMPSCNGWSYWHFNIEGKLEPIDYLRKKIRSSL 353


>gi|309792788|ref|ZP_07687231.1| DNA methylase N-4/N-6 domain-containing protein [Oscillochloris
           trichoides DG6]
 gi|308225152|gb|EFO78937.1| DNA methylase N-4/N-6 domain-containing protein [Oscillochloris
           trichoides DG6]
          Length = 357

 Score =  408 bits (1048), Expect = e-112,   Method: Composition-based stats.
 Identities = 190/354 (53%), Positives = 253/354 (71%), Gaps = 3/354 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + I+ G+ I +L  LP K VDLIFADPPYNLQL  +L RP+ ++VDAVTD+WD+F+ F 
Sbjct: 1   MNHILHGSCIDLLPSLPEKCVDLIFADPPYNLQLQNELIRPNQTVVDAVTDTWDQFADFA 60

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FT  WL ACRRVLK +GT+WVIGSYHNIFR+G ++ +L +WILND++W K+NPMPN
Sbjct: 61  AYDHFTEQWLSACRRVLKDDGTIWVIGSYHNIFRVGKIMMDLGYWILNDVIWHKTNPMPN 120

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           FRG RFQNA ET+IWA  S + K YTF+Y A+K  N+D QM++ W IP+C+G+ER+   D
Sbjct: 121 FRGTRFQNATETMIWAKKSREQKKYTFHYQAMKNFNDDKQMQNVWYIPLCTGAERI-KID 179

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K H TQKPEALL R+LV+S+ PGD++LDPFFGSGT+GAVAK+L+R++IGIE   +Y++
Sbjct: 180 GKKAHSTQKPEALLYRVLVASSNPGDMVLDPFFGSGTTGAVAKRLQRNYIGIERSAEYVE 239

Query: 260 IATKRIASVQPLGNIELTVLT-GKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           IA +RIA++         +LT  KR  PR++F  L+E   I  GQ + +    ++A V A
Sbjct: 240 IARQRIAAISATCLEHGELLTRSKRNAPRISFGQLLEAQYISVGQPIFSQDRAVTAIVKA 299

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEK-LGELHSINTLRILVRKE 371
           D  LI   + GSIH++ A V      NGW +WY+E   G L SI+ LR   R E
Sbjct: 300 DAQLICNDQTGSIHKIAASVQNRAAANGWEYWYYEDAAGNLVSIDELRERYRHE 353


>gi|159899562|ref|YP_001545809.1| DNA methylase N-4/N-6 domain-containing protein [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159892601|gb|ABX05681.1| DNA methylase N-4/N-6 domain protein [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 375

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 200/355 (56%), Positives = 254/355 (71%), Gaps = 7/355 (1%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+I+ G+   VL  LP  SVDLIFADPPYNLQL G L RP+ + VDAV D WD F  F A
Sbjct: 9   DQILLGDCRDVLPLLPPASVDLIFADPPYNLQLRGDLLRPNMTHVDAVDDDWDSFRDFAA 68

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YDAFTRAWL AC+RVLK NGT+WVIGSYHNI+R+GT+LQ+L FWILNDIVW K NPMPNF
Sbjct: 69  YDAFTRAWLQACQRVLKDNGTMWVIGSYHNIYRVGTILQDLGFWILNDIVWIKRNPMPNF 128

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG R  NAHETLIW +  P  K YTFNY AL+  N+D QMRSDW  P+C+G+ERL   +G
Sbjct: 129 RGVRLTNAHETLIWCAKLPGQK-YTFNYHALRHLNDDKQMRSDWEFPLCTGNERL-RING 186

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K+H TQKPEALL R+L++S+  GD++LDPFFG+GT+GAVAK+L R +IGIE    Y++ 
Sbjct: 187 NKVHSTQKPEALLYRVLLASSNVGDVVLDPFFGTGTTGAVAKRLARHYIGIERDPSYVEA 246

Query: 261 ATKRIASVQPLGNIE--LTVLTGKRTEPRVAFNLLVERGLIQPGQIL-TNAQGNISATVC 317
           A  RIA+++   + +    + + KR  PR+ F  L+E GL+Q GQ L  N   N+ AT+ 
Sbjct: 247 ARGRIAAIESPSSTDALQALPSNKRRIPRIPFGNLLEHGLLQAGQQLWFNRDPNLVATLL 306

Query: 318 ADGTL-ISGTELGSIHRVGAKVSGSETCNGWNFWYFE-KLGELHSINTLRILVRK 370
           AD +L +S    GSIH++G  ++G  +CNGW  W+F+   G L SI+ LR  VR+
Sbjct: 307 ADASLRMSDGTRGSIHKLGTILTGQPSCNGWEHWFFQASDGTLTSIDVLRQEVRR 361


>gi|49420962|gb|AAT65821.1| M.EsaWC2I [uncultured bacterium]
          Length = 366

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 192/357 (53%), Positives = 252/357 (70%), Gaps = 6/357 (1%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++II+G+ I  L   P KS+DLIFADPPYNLQL  +L+RP+ + VDAV D WDKF S +A
Sbjct: 6   NQIIEGDCIETLSTFPEKSIDLIFADPPYNLQLQNELHRPNMTKVDAVDDQWDKFESLQA 65

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL AC+RVLKP GT+WVIG+YHNIFR+G ++Q+L FWILND++W K+NPMPNF
Sbjct: 66  YDEFTRRWLTACKRVLKPTGTIWVIGTYHNIFRVGAIMQDLGFWILNDVIWIKTNPMPNF 125

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL-IPICSGSERLRNKD 199
           RG RF NAHETLIWAS    A  YTFN+ A+K  N+D QMRSDW  + + +GSER+++  
Sbjct: 126 RGVRFTNAHETLIWASTGKGA-TYTFNHQAMKGLNDDKQMRSDWWLLSLATGSERVKDDH 184

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           GEK H TQKPEALL R+++SS+ PGD++LDPFFGSGT+G VAK+L R++IG+E ++ YI+
Sbjct: 185 GEKAHSTQKPEALLYRVILSSSNPGDVVLDPFFGSGTTGVVAKRLHRNWIGVEREKKYIE 244

Query: 260 IATKRIASVQP--LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQ-GNISATV 316
           IA KRI +VQP     +   V +  +T PRV F+ LVE G +QPGQ L   +  N  A +
Sbjct: 245 IARKRIDAVQPEVFNPVVFDVRSKAKTAPRVEFSTLVEHGYVQPGQTLFFRKDTNKVAFI 304

Query: 317 CADGTLISGTEL-GSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
             D  L +G    GSIH+ G+    +  CNGW  W+ +  G   S+  LR   R ++
Sbjct: 305 KPDARLRTGDGFEGSIHQAGSYYMNNAPCNGWEHWFVQVNGHFISLGDLREQFRMDM 361


>gi|320161362|ref|YP_004174586.1| putative modification methylase [Anaerolinea thermophila UNI-1]
 gi|319995215|dbj|BAJ63986.1| putative modification methylase [Anaerolinea thermophila UNI-1]
          Length = 368

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 196/350 (56%), Positives = 254/350 (72%), Gaps = 6/350 (1%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I++G+   +L  LP +S+DLIFADPPYNLQL   LYRPD S VDAV DSWD+F+SF  
Sbjct: 11  NQILQGDCRQILPSLPDQSIDLIFADPPYNLQLQQDLYRPDRSRVDAVNDSWDQFTSFAE 70

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD F+R+WL  CRRVLK +G +WVIG+YHNIFR+GT+LQ+L FWILND+VW KSNPMPNF
Sbjct: 71  YDEFSRSWLTECRRVLKDDGAIWVIGTYHNIFRLGTILQDLGFWILNDVVWIKSNPMPNF 130

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG RF NAHETLIWA  S +A  YTFN+ A+KA NED+QMRSDW IPICSG+ER+    G
Sbjct: 131 RGVRFTNAHETLIWAVKSRRAN-YTFNHHAMKALNEDLQMRSDWYIPICSGTERI-RIHG 188

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +K+H TQKPEALL RI++++T+PGD+ILDPFFG+GT+GAVA++L R++IGIE +  YI++
Sbjct: 189 KKVHSTQKPEALLYRIILATTRPGDVILDPFFGTGTTGAVARRLGRNWIGIEKEPRYIEL 248

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL-TNAQGNISATVCAD 319
           A +RI  ++P    +   L  +  + R+ F  LVE+ L+QPGQIL  +    I A V +D
Sbjct: 249 ARQRIEQIEPYPQ-QALALPVRSRKSRLPFGRLVEQNLVQPGQILFFDRNPEIRAVVLSD 307

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYF-EKLGELHSINTLRILV 368
           G L      GSIH    K+ G  T NGW  W+F ++ G    I+ LR   
Sbjct: 308 GHLSVNGWKGSIHMTAEKICGHPT-NGWERWFFLDEQGIFQPISILRQKY 356


>gi|156742203|ref|YP_001432332.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156233531|gb|ABU58314.1| DNA methylase N-4/N-6 domain protein [Roseiflexus castenholzii DSM
           13941]
          Length = 369

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 192/361 (53%), Positives = 256/361 (70%), Gaps = 8/361 (2%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++II+G+ + +L  LP  S+DLIFADPPY+LQL  +L+RP+ + VDAV D WDKF S +A
Sbjct: 6   NQIIEGDCVEILNTLPETSIDLIFADPPYHLQLQNELHRPNMTKVDAVDDDWDKFESMQA 65

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL AC+RVLKP GT+WVIG+YHNIFR+G M+Q+L FWILND++W K NPMPNF
Sbjct: 66  YDEFTRTWLTACKRVLKPTGTIWVIGTYHNIFRVGAMMQDLGFWILNDVIWIKLNPMPNF 125

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL-IPICSGSERLRNKD 199
           RG RF NAHETLIWAS    A  YTFNY A+K  N++ QMRSDW  +P+ +GSER++N+ 
Sbjct: 126 RGVRFTNAHETLIWASTGKDA-TYTFNYYAMKGLNDEKQMRSDWWLLPLATGSERVKNEH 184

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K H TQKPEALL R+++SS+ PGD++LDPFFGSGT+G VAK+L R++IGIE ++ Y+ 
Sbjct: 185 GDKAHSTQKPEALLYRVILSSSNPGDVVLDPFFGSGTTGVVAKRLHRNWIGIEKEKRYVQ 244

Query: 260 IATKRIASVQP--LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL-TNAQGNISATV 316
           IA KRI ++QP         V +  ++ P+V F++LVE G +QPGQ L         AT+
Sbjct: 245 IAQKRIDAMQPEMFDAATFDVKSKAKSAPKVEFSVLVEHGYVQPGQRLFFGKDKTKVATI 304

Query: 317 CADGTLISGTEL-GSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVR--KELY 373
             D  L +     GSIH+ G+    +  CNGW  W+ E  G++ S++ +R   R  K LY
Sbjct: 305 KPDARLRTADGFEGSIHQAGSHYMNNAPCNGWEHWFIEVDGQMISLDEVREKFRVDKGLY 364

Query: 374 N 374
           N
Sbjct: 365 N 365


>gi|260495302|ref|ZP_05815429.1| DNA methylase [Fusobacterium sp. 3_1_33]
 gi|260197080|gb|EEW94600.1| DNA methylase [Fusobacterium sp. 3_1_33]
          Length = 357

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 177/354 (50%), Positives = 247/354 (69%), Gaps = 2/354 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI KG+SI VL+K+P++SVD IFADPPY +Q  G+L R D +  + V D WDKF +F+ 
Sbjct: 4   NKIFKGDSIEVLKKIPSESVDFIFADPPYYMQTEGELLRTDGTKFNGVEDEWDKFENFQD 63

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD F++ WL  CRRVLK NGT+ VIGS+ NI+RIG ++Q+L +WILNDI+W+K+NP+PNF
Sbjct: 64  YDNFSKKWLGECRRVLKKNGTIAVIGSFQNIYRIGNIMQDLGYWILNDIIWKKTNPVPNF 123

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G+RF N+HET++W S   K+K  TFNY  +K  N D Q +S W IP+C+G+ERL++++G
Sbjct: 124 SGKRFCNSHETILWCSKDKKSKI-TFNYKTMKYLNGDKQEKSVWEIPLCTGNERLKDEEG 182

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            KLH TQKPE LL +IL+S TKP DI+LDPFFG+GT+GAVA +  R++IGIE ++ YI  
Sbjct: 183 NKLHSTQKPEKLLYKILISMTKPNDIVLDPFFGTGTTGAVAVETGRNYIGIEREEKYIKA 242

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KRIAS     N+ +T L  +   P+V    LVE+G ++  Q+L N+ G    TV ++G
Sbjct: 243 AEKRIASKIYQKNM-ITELLLEVKPPKVPLKKLVEKGYLKENQVLYNSLGEAKVTVLSNG 301

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
            +  G E  SIH++ AK+      NGW+++Y    G+L  +N LR    KE+ N
Sbjct: 302 DVFDGNEKLSIHKMSAKILNKTNNNGWDYFYVMNNGKLIPLNDLRYQYDKEVNN 355


>gi|219850190|ref|YP_002464623.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
           aggregans DSM 9485]
 gi|219544449|gb|ACL26187.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aggregans DSM
           9485]
          Length = 369

 Score =  391 bits (1005), Expect = e-107,   Method: Composition-based stats.
 Identities = 192/361 (53%), Positives = 255/361 (70%), Gaps = 8/361 (2%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +++I+G+ + +L  LP  S+DLIFADPPY+LQL  +LYRP+ + VDAV D WDKF S +A
Sbjct: 6   NQVIEGDCVEILNTLPETSIDLIFADPPYHLQLQNELYRPNMTKVDAVDDDWDKFESMQA 65

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD FTR WL AC+RVLKP GT+WVIG+YHNIFR+G ++Q+L FWILND++W K NPMPNF
Sbjct: 66  YDEFTRTWLTACKRVLKPTGTIWVIGTYHNIFRVGAIMQDLGFWILNDVIWIKLNPMPNF 125

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL-IPICSGSERLRNKD 199
           RG RF NAHETLIWAS    A  YTFNY A+K  N++ QMRSDW  +P+ +GSER++N++
Sbjct: 126 RGVRFTNAHETLIWASTGKDA-TYTFNYYAMKGLNDEKQMRSDWWLLPLATGSERVKNEN 184

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K H TQKPEALL R+++SS+ PGD++LDPFFGSGT+G VAK+L R++IGIE ++ YI 
Sbjct: 185 GDKAHSTQKPEALLYRVILSSSNPGDVVLDPFFGSGTTGVVAKRLHRNWIGIEKEKKYIQ 244

Query: 260 IATKRIASVQP--LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL-TNAQGNISATV 316
           IA KRI +VQP         V +  ++ P+V F++LVE G +QPGQ L         AT+
Sbjct: 245 IAQKRIDAVQPEMFDAATFDVKSKAKSAPKVEFSVLVEHGYVQPGQRLFFGKDKTKVATI 304

Query: 317 CADGTLISGTEL-GSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVR--KELY 373
             D  L +     GSIH+ G+    +  CNGW  W+ E  G++  +  +R   R  K LY
Sbjct: 305 KPDSRLRTADGFEGSIHQAGSHYMNNAPCNGWEHWFIEVDGQMIGLGEVREKFRVDKGLY 364

Query: 374 N 374
           N
Sbjct: 365 N 365


>gi|256027628|ref|ZP_05441462.1| adenine specific DNA methyltransferase (HINFIM) [Fusobacterium sp.
           D11]
 gi|289765586|ref|ZP_06524964.1| methylase [Fusobacterium sp. D11]
 gi|289717141|gb|EFD81153.1| methylase [Fusobacterium sp. D11]
          Length = 357

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 177/354 (50%), Positives = 246/354 (69%), Gaps = 2/354 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI KG+SI VL+K+P++SVD IFADPPY +Q  G+L R D +  + V D WDKF +F+ 
Sbjct: 4   NKIFKGDSIEVLKKIPSESVDFIFADPPYYMQTEGELLRTDGTKFNGVEDEWDKFENFQD 63

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD F++ WL  CRRVLK NGT+ VIGS+ NI+RIG ++Q+L +WILNDI+W+K+NP+PNF
Sbjct: 64  YDNFSKKWLGECRRVLKKNGTIAVIGSFQNIYRIGNIMQDLGYWILNDIIWKKTNPVPNF 123

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G+RF N+HET++W S   K+K  TFNY  +K  N D Q +S W IP+C+G+ERL++++G
Sbjct: 124 SGKRFCNSHETILWCSKDKKSKI-TFNYKTMKYLNGDKQEKSVWEIPLCTGNERLKDEEG 182

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            KLH TQKPE LL +IL+S TKP DI+LDPFFG+GT GAVA +  R++IGIE ++ YI  
Sbjct: 183 NKLHSTQKPEKLLYKILISMTKPNDIVLDPFFGTGTIGAVAVETGRNYIGIEREEKYIKA 242

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KRIAS     N+ +T L  +   P+V    LVE+G ++  Q+L N+ G    TV ++G
Sbjct: 243 AEKRIASKIYQKNM-ITELLLEVKPPKVPLKKLVEKGYLKENQVLYNSLGEAKVTVLSNG 301

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
            +  G E  SIH++ AK+      NGW+++Y    G+L  +N LR    KE+ N
Sbjct: 302 DVFDGNEKLSIHKMSAKILNKTNNNGWDYFYVMNNGKLIPLNDLRYQYDKEVNN 355


>gi|237743216|ref|ZP_04573697.1| modification methylase HinfI [Fusobacterium sp. 7_1]
 gi|229433512|gb|EEO43724.1| modification methylase HinfI [Fusobacterium sp. 7_1]
          Length = 357

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 176/354 (49%), Positives = 244/354 (68%), Gaps = 2/354 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI KG+SI VL+K+P++SVD IFADPPY +Q  G+L R D +  + V D WDKF +F+ 
Sbjct: 4   NKIFKGDSIEVLKKIPSESVDFIFADPPYYMQTEGELLRIDGTKFNGVEDEWDKFENFQD 63

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD F++ WL  CRRVLK NGT+ VIGS+ NI+RIG ++Q+L +WILNDI+W+K+NP+PNF
Sbjct: 64  YDNFSKKWLGECRRVLKKNGTIAVIGSFQNIYRIGNIMQDLGYWILNDIIWKKTNPVPNF 123

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G+RF N+HET++W S   K+K  TFNY  +K  N D Q +S W IP+C+G+ERL++++G
Sbjct: 124 SGKRFCNSHETILWCSKDKKSKI-TFNYKTMKYLNGDKQEKSVWEIPLCTGNERLKDEEG 182

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            KLH TQKPE LL +IL+S TKP DI+LDPFFG+GT+GAVA +  R++IGIE ++ YI  
Sbjct: 183 NKLHSTQKPEKLLYKILISMTKPNDIVLDPFFGTGTTGAVAVETGRNYIGIEREEKYIKA 242

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A KRIAS     N+ +T L  +   P+V    LVE+G ++  Q L N+ G     V ++G
Sbjct: 243 AEKRIASKIYQKNM-ITELLLEVKPPKVPLKKLVEKGYLKENQALYNSLGEAKVKVLSNG 301

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
            +  G E  SIH++ AK+      NGW+++Y    G+L  +N LR    KE  N
Sbjct: 302 DVFDGNEKLSIHKMSAKILNKTNNNGWDYFYVMNNGKLIPLNDLRYQYAKEFNN 355


>gi|127456|sp|P20590|MTH1_HAEIN RecName: Full=Modification methylase HinfI; Short=M.HinfI; AltName:
           Full=Adenine-specific methyltransferase HinfI
 gi|148945|gb|AAA24986.1| methylase [Haemophilus influenzae]
          Length = 359

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 157/356 (44%), Positives = 239/356 (67%), Gaps = 2/356 (0%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           + +I ++ + I+KG+ I  L+ +P +S+DLIFADPPY +Q  G+L R +      V D W
Sbjct: 3   KENINDFLNTILKGDCIEKLKTIPNESIDLIFADPPYFMQTEGKLLRTNGDEFSGVDDEW 62

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           DKF+ F  YD+F   WL  C+R+LK  G++WVIGS+ NI+RIG ++QNL+FWILND++W 
Sbjct: 63  DKFNDFVEYDSFCELWLKECKRILKSTGSIWVIGSFQNIYRIGYIMQNLDFWILNDVIWN 122

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K+NP+PNF G RF NAHET++W S   K K +TFNY  +K  N++ Q RS W + +C+G 
Sbjct: 123 KTNPVPNFGGTRFCNAHETMLWCSKCKKNK-FTFNYKTMKHLNQEKQERSVWSLSLCTGK 181

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           ER+++++G+K H TQKPE+LL ++++SS+KP D++LDPFFG+GT+GAVAK L R++IGIE
Sbjct: 182 ERIKDEEGKKAHSTQKPESLLYKVILSSSKPNDVVLDPFFGTGTTGAVAKALGRNYIGIE 241

Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNI 312
            +Q YID+A KR+  ++P  N ++ +L+ +   P+V    L+E   ++ GQ L +   N 
Sbjct: 242 REQKYIDVAEKRLREIKPNPN-DIELLSLEIKPPKVPMKTLIEADFLRVGQTLFDKNENA 300

Query: 313 SATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
              V  DG +    E  SIH++ AK       NGW+++Y  +     ++++LR   
Sbjct: 301 ICIVTQDGNVKDNEETLSIHKMSAKYLNKTNNNGWDYFYLFRNNNFITLDSLRYEY 356


>gi|255603684|ref|XP_002538097.1| Modification methylase CcrMI, putative [Ricinus communis]
 gi|223513836|gb|EEF24286.1| Modification methylase CcrMI, putative [Ricinus communis]
          Length = 311

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 188/294 (63%), Positives = 226/294 (76%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II+G+ I  +  LP KSVDLIFADPPYNLQL G L RPD+S VDAV D WD+F SF AY
Sbjct: 7   TIIQGDCIEAMNALPEKSVDLIFADPPYNLQLGGDLLRPDNSKVDAVDDHWDQFESFAAY 66

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D FTR WL A RRVLK +G +WVIGSYHNIFR+G  +Q+L FWILND++WRK+NPMPNF+
Sbjct: 67  DKFTREWLKAARRVLKDDGAIWVIGSYHNIFRVGVAVQDLGFWILNDVIWRKTNPMPNFK 126

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G RF NAHETLIWAS S  AK YTFNYDALK AN++VQMRSDW IP+C+G ER++  DG+
Sbjct: 127 GTRFANAHETLIWASKSQNAKRYTFNYDALKMANDEVQMRSDWTIPLCTGEERIKGADGQ 186

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HPTQKPEALL R+++S+TKPGD+ILDPFFG GT+GA AK+L R FIGIE + +YI+ A
Sbjct: 187 KAHPTQKPEALLYRVILSTTKPGDVILDPFFGVGTTGAAAKRLGRKFIGIEREAEYIEHA 246

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
             RIA V P+   +L +   KR EPRV F  +VE GL+ PG  L  A+G  +A 
Sbjct: 247 RTRIAQVTPIAPQDLEMTGSKRAEPRVPFGAIVENGLLHPGDTLYCAKGAHAAK 300


>gi|315453389|ref|YP_004073659.1| adenine specific DNA methylase [Helicobacter felis ATCC 49179]
 gi|315132441|emb|CBY83069.1| adenine specific DNA methylase [Helicobacter felis ATCC 49179]
          Length = 351

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 167/350 (47%), Positives = 231/350 (66%), Gaps = 3/350 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           DKI++GN + +L  LP++SVDLI ADPPY +Q  G L R +  +   V  +WD+F S +A
Sbjct: 3   DKILQGNCLELLPTLPSESVDLIIADPPYFMQTQGDLLRDNGEVFMGVRAAWDQFESLQA 62

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD+F  AWL  CRRVLK +G++WV+GS+ NI+R+G ++QNL FWILNDI+W K NP+PNF
Sbjct: 63  YDSFCLAWLSECRRVLKAHGSIWVMGSFQNIYRLGYLMQNLGFWILNDIIWAKPNPVPNF 122

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           RG RF NAHE+L+W +    A+ YTFNY  +KA N + Q RS W I IC G+ERL+  D 
Sbjct: 123 RGSRFCNAHESLLWCAKDKSAR-YTFNYKTMKALNHNKQERSIWHISICMGAERLKGADR 181

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +KLHPTQKP+ALL +I++SS+KPGD+ILDPFFG+GT+GA+AKK +R F+GIE    ++  
Sbjct: 182 KKLHPTQKPQALLEKIILSSSKPGDLILDPFFGTGTTGAIAKKFKRHFLGIEQDPLFVQE 241

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           ATKRIA++ PL N      + +   P+V+   L + G +Q  Q   + + N    +  D 
Sbjct: 242 ATKRIANITPLSN-PFIEASLEIKPPKVSLKQLCKAGFLQEKQKFYDKEQNYICYLLED- 299

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRK 370
            L    E  SIH++ AK    +  NGW ++Y    GE  S++ LR     
Sbjct: 300 RLHDHQEHLSIHQMAAKHLHKKNHNGWTYFYVFWQGEFVSVDLLRYAYNA 349


>gi|322379181|ref|ZP_08053573.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter suis
           HS1]
 gi|322379987|ref|ZP_08054255.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter suis
           HS5]
 gi|321147576|gb|EFX42208.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter suis
           HS5]
 gi|321148383|gb|EFX42891.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter suis
           HS1]
          Length = 357

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 155/351 (44%), Positives = 233/351 (66%), Gaps = 3/351 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I++GN + +L+ LP++SVD IFADPPY +Q  G+L R   +  + V ++WD+F  F  
Sbjct: 5   NTILQGNCLDILKDLPSQSVDFIFADPPYFMQTQGELLRVGGARFEGVQETWDQFKDFAH 64

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD F+  WL  CRR+LK  G++ VIGS+ NI+R+G ++QNL FWI+NDI+W K+NP+PNF
Sbjct: 65  YDDFSCLWLAQCRRLLKNRGSICVIGSFQNIYRLGYLMQNLGFWIINDIIWHKTNPVPNF 124

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G R  NAHE ++W +   KA  +TFNY  LK+ N++ Q +S W IP+C+GSERL+N++G
Sbjct: 125 TGSRLCNAHEIILWCAKDKKA-SFTFNYKTLKSLNQNKQEKSVWFIPLCTGSERLKNQEG 183

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            KLHPTQKPE LL ++++ +TKP D+ILDPFFG+GT+GA+AKKL RSF+GIE  + YI  
Sbjct: 184 NKLHPTQKPEQLLEKLILMATKPHDLILDPFFGTGTTGAMAKKLGRSFLGIEKNEIYIKA 243

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A +RI  +  +    +  L  ++  P+V+  +L++ G ++ G  L +        V ADG
Sbjct: 244 AQRRIEQIT-ISQDAMAYLELEKKPPKVSMKVLIDTGYLKIGDKLYSPDYQEKCQVLADG 302

Query: 321 TLIS-GTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRK 370
            +     ++ SIH++ AK+      NGW+++Y +   +  S+N LR    K
Sbjct: 303 KVCDASGQVLSIHKMSAKILNKINHNGWDYFYIKDGMQFISLNQLRYCYHK 353


>gi|237745127|ref|ZP_04575608.1| modification methylase HinfI [Fusobacterium sp. 7_1]
 gi|229432356|gb|EEO42568.1| modification methylase HinfI [Fusobacterium sp. 7_1]
          Length = 370

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 169/356 (47%), Positives = 245/356 (68%), Gaps = 2/356 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           I ++ + II+G++I  L++LP +S+D IFADPPY +Q  G+L R D +    V D WDKF
Sbjct: 3   INKFINTIIEGDTIKNLKRLPDESIDFIFADPPYYMQTEGELLRVDGTKFKGVEDKWDKF 62

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
             F+ YD FT+ WL  C+RVLK + T+ VIGS+ NI+R+G ++Q+L +WILNDI+W+K+N
Sbjct: 63  KDFKDYDDFTKKWLKECKRVLKKDATIAVIGSFQNIYRVGNIMQDLGYWILNDIIWKKTN 122

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+RF N+HET++W S + K+K  TFNY  +K  N + Q +S W I +C+G+ERL
Sbjct: 123 PVPNFSGKRFCNSHETILWCSKNKKSKI-TFNYKTMKYLNNEKQEKSIWEISLCTGNERL 181

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++K+G KLH +QKPE LL ++L+S+TKP DIILDPFFG+GT+GAVAK++ R++IGIE ++
Sbjct: 182 KDKNGNKLHSSQKPEKLLYKLLISATKPKDIILDPFFGTGTTGAVAKEIGRNYIGIEKEK 241

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            Y++ A KRIAS +      +T LT +   P+V    L+E+G +Q  Q L N+ G     
Sbjct: 242 VYVEAAEKRIAS-KNYQRSLITELTLEEKPPKVPVKKLLEKGYLQKNQELYNSLGEKKGI 300

Query: 316 VCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           V  DG +  G E  SIH++ AK+      NGW+++Y  + G L S+N LR    KE
Sbjct: 301 VLEDGNIFDGIETLSIHKMSAKLLNKTNNNGWDYFYIIEKGNLISLNDLRYRYDKE 356


>gi|294785907|ref|ZP_06751195.1| modification methylase CcrM [Fusobacterium sp. 3_1_27]
 gi|294487621|gb|EFG34983.1| modification methylase CcrM [Fusobacterium sp. 3_1_27]
          Length = 370

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 168/356 (47%), Positives = 245/356 (68%), Gaps = 2/356 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           I ++ + II+G++I  L++LP +S+D IFADPPY +Q  G+L R D +    V D WDKF
Sbjct: 3   INKFINTIIEGDTIKNLKRLPDESIDFIFADPPYYMQTEGELLRVDGTKFKGVEDKWDKF 62

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
             F+ YD FT+ WL  C+RVLK + T+ VIGS+ NI+R+G ++Q+L +WILNDI+W+K+N
Sbjct: 63  KDFKDYDNFTKKWLKECKRVLKKDATIAVIGSFQNIYRVGNIMQDLGYWILNDIIWKKTN 122

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+RF N+HET++W S + K+K  TFNY  +K  N + Q +S W I +C+G+ERL
Sbjct: 123 PVPNFSGKRFCNSHETILWCSKNKKSKI-TFNYKTMKYLNNEKQEKSIWEISLCTGNERL 181

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++++G KLH +QKPE LL ++L+S+TKP DIILDPFFG+GT+GAVAK++ R++IGIE ++
Sbjct: 182 KDENGNKLHSSQKPEKLLYKLLISATKPKDIILDPFFGTGTTGAVAKEIGRNYIGIEKEK 241

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            Y++ A KRIAS +      +T LT +   P+V    L+E+G +Q  Q L N+ G     
Sbjct: 242 VYVEAAEKRIAS-KNYQRSLITELTLEEKPPKVPVKKLLEKGYLQKNQELYNSLGERKGI 300

Query: 316 VCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           V  DG +  G E  SIH++ AK+      NGW+++Y  + G L S+N LR    KE
Sbjct: 301 VLEDGKIFDGIETLSIHKMSAKLLNKANNNGWDYFYIIEKGNLISLNDLRYRYDKE 356


>gi|237741481|ref|ZP_04571962.1| modification methylase HinfI [Fusobacterium sp. 4_1_13]
 gi|260497889|ref|ZP_05816008.1| DNA methylase [Fusobacterium sp. 3_1_33]
 gi|229429129|gb|EEO39341.1| modification methylase HinfI [Fusobacterium sp. 4_1_13]
 gi|260196555|gb|EEW94083.1| DNA methylase [Fusobacterium sp. 3_1_33]
          Length = 370

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 169/356 (47%), Positives = 246/356 (69%), Gaps = 2/356 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           I ++ + II+G++I  L++LP +S+D IFADPPY +Q  G+L R D +    V D WDKF
Sbjct: 3   INKFINTIIEGDTIKNLKRLPDESIDFIFADPPYYMQTEGELLRVDGTKFKGVEDKWDKF 62

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
             F+ YD FT+ WL  C+RVLK + T+ VIGS+ NI+RIG ++Q+L +WILNDI+W+K+N
Sbjct: 63  KDFKDYDDFTKKWLKECKRVLKKDATIAVIGSFQNIYRIGNIMQDLGYWILNDIIWKKTN 122

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+RF N+HET++W S + K+K  TFNY  +K  N + Q +S W I +C+G+ERL
Sbjct: 123 PVPNFSGKRFCNSHETILWCSKNKKSKI-TFNYKTMKYLNNEKQEKSIWEISLCTGNERL 181

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++++G KLH +QKPE LL ++L+S+TKP DIILDPFFG+GT+GAVAK++ R++IGIE ++
Sbjct: 182 KDENGNKLHSSQKPEKLLYKLLISATKPKDIILDPFFGTGTTGAVAKEIGRNYIGIEKEK 241

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            Y++ A KRIAS +      +T LT +   P+V    L+E+G +Q  Q L N+ G     
Sbjct: 242 VYVEAAEKRIAS-KNYQRSLVTELTLEEKPPKVPVKKLLEKGYLQKNQELYNSLGERKGI 300

Query: 316 VCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           V  DG +  G E+ SIH++ AK+      NGW+++Y  + G L S+N LR    KE
Sbjct: 301 VLEDGNIFDGIEILSIHKMSAKLLNKANNNGWDYFYIIEKGNLISLNDLRYRYNKE 356


>gi|296126404|ref|YP_003633656.1| DNA methylase N-4/N-6 domain protein [Brachyspira murdochii DSM
           12563]
 gi|296018220|gb|ADG71457.1| DNA methylase N-4/N-6 domain protein [Brachyspira murdochii DSM
           12563]
          Length = 360

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 166/353 (47%), Positives = 235/353 (66%), Gaps = 2/353 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           I + K+ IIKG+++  L+K+P  S+DLIFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   IDDIKNTIIKGDALEELKKIPDDSIDLIFADPPYYMQTEGELLRTNGTKFSGVDDEWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            +FE YD F+  WL  CRRVLK  G++WVIGS+ NIFRIG ++Q+L FWILNDI+W K+N
Sbjct: 64  KNFEDYDNFSINWLKECRRVLKITGSIWVIGSFQNIFRIGKIMQDLGFWILNDIIWSKTN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G RF NAHETLIW   +   K YTFNY  +K  N D Q +S W I +C+G+ERL
Sbjct: 124 PVPNFGGTRFCNAHETLIWCGKNKNTK-YTFNYKTMKHLNNDKQDKSIWNISLCTGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++KDG K+H TQKPE LL ++++SS+KP DI+LDPFFG+GT+GAVAK+L R++IGIE + 
Sbjct: 183 KDKDGNKVHSTQKPEELLFKVILSSSKPNDIVLDPFFGTGTTGAVAKRLSRNYIGIERED 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A  RI +   +   +L  L  +   P+V    L+E+G ++  Q+L + +G+    
Sbjct: 243 KYIYYAKDRIKNT-NVEMTDLINLDYEVKPPKVPIKNLIEKGYLKVNQVLYSKKGDEVCK 301

Query: 316 VCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
           +  +G + +     SIH++ AK+      NGWN++Y     +  SI+ LR + 
Sbjct: 302 LNENGNVENELGNFSIHQMSAKLQNLSKYNGWNYFYIYYKDKFISIDELRYIY 354


>gi|317014745|gb|ADU82181.1| type II DNA modification (methyltransferase) [Helicobacter pylori
           Gambia94/24]
          Length = 359

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 165/357 (46%), Positives = 225/357 (63%), Gaps = 3/357 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P KSVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPNKSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SFE YD F   WL  C+R+LK NG++ VIGS+ NIFRIG  LQNL FWILNDIVW KSN
Sbjct: 64  GSFEEYDTFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIVWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +K  TFNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNSK-VTFNYKTMKYLNNDKQEKSVWQIPICMGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L ++       
Sbjct: 243 FYIKEAIKRLNNARDKSDF-ITNLDLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301

Query: 316 VCADGTLISG-TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +++
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQRD 358


>gi|108563725|ref|YP_628041.1| adenine specific DNA methyltransferase [Helicobacter pylori HPAG1]
 gi|107837498|gb|ABF85367.1| adenine specific DNA methyltransferase [Helicobacter pylori HPAG1]
          Length = 359

 Score =  367 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 166/358 (46%), Positives = 225/358 (62%), Gaps = 3/358 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P KSVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPNKSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SFE YDAF   WL  C+R+LK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  GSFEEYDAFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +K  +FNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNSK-VSFNYKTMKYLNNDKQEKSVWQIPICMGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+ S +   +  +T L  +   P++  +LL+ + L++ G  L +        
Sbjct: 243 FYIKEAAKRLNSARDKSDF-ITNLELETKPPKIPMSLLISKQLLKIGDFLYSPNKEKICQ 301

Query: 316 VCADGTLISG-TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +K+ 
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNRTNHNGWKFFYAYYQNQFLLLDELRYICQKDF 359


>gi|261838917|gb|ACX98682.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
           pylori 52]
          Length = 359

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 164/358 (45%), Positives = 225/358 (62%), Gaps = 3/358 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPDRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SF+ YD F   WL  C+R+LK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  DSFKEYDTFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +K  +FNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNSK-VSFNYKTMKYLNNDKQEKSVWQIPICIGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+ + +   +  +T L  +   P+V  +LL+ + L++ G  L ++       
Sbjct: 243 FYIKEAAKRLNNTRDKSDF-ITNLGLETKPPKVPMSLLISKQLLKIGDFLYSSNKEKICQ 301

Query: 316 VCADGTLISG-TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +KE 
Sbjct: 302 VLENGQVRDNENHETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKEF 359


>gi|317013139|gb|ADU83747.1| adenine specific DNA methyltransferase [Helicobacter pylori
           Lithuania75]
          Length = 359

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 163/358 (45%), Positives = 224/358 (62%), Gaps = 3/358 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SFE YD F   WL  C+R+LK NG++ VIGS+HNIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  GSFEEYDTFCLGWLKECQRILKDNGSICVIGSFHNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +K  TFNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNSK-VTFNYKTMKYLNNDKQEKSVWQIPICMGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPE LL +I++S+TKP DI+LDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDAQGKKVHSTQKPEVLLKKIILSATKPKDIVLDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+   +   +  +T L  +   P++  +LL+ + L++ G  L ++       
Sbjct: 243 FYIKEAAKRLNDTRDKSDF-ITNLELETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301

Query: 316 VCADGTLISG-TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +K+ 
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKDF 359


>gi|307638026|gb|ADN80476.1| adenine specific DNA methyltransferase [Helicobacter pylori 908]
 gi|325996628|gb|ADZ52033.1| adenine specific DNA methyltransferase [Helicobacter pylori 2018]
 gi|325998218|gb|ADZ50426.1| adenine specific DNA methyltransferase [Helicobacter pylori 2017]
          Length = 359

 Score =  366 bits (939), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 166/357 (46%), Positives = 225/357 (63%), Gaps = 3/357 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P KSVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNAIIEGDCLEKLKDFPNKSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SFE YD F   WL  C+R+LK NG++ VIGS+ NIFRIG  LQNL FWILNDIVW KSN
Sbjct: 64  GSFEEYDTFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIVWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +K  TFNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNSK-VTFNYKTMKYLNNDKQEKSVWQIPICMGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+ S +   +  +T L  +   P++  +LL+ + L++ G  L ++       
Sbjct: 243 FYIKEAAKRLNSARDKSDF-ITNLELETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301

Query: 316 VCADGTLISG-TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +++
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQRD 358


>gi|15612336|ref|NP_223989.1| type II DNA modification (methyltransferase [Helicobacter pylori
           J99]
 gi|4155885|gb|AAD06856.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
           pylori J99]
          Length = 359

 Score =  366 bits (939), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 166/357 (46%), Positives = 225/357 (63%), Gaps = 3/357 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P KSVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPNKSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SFE YD F   WL  C+R+LK NG++ VIGS+ NIFRIG  LQNL FWILNDIVW KSN
Sbjct: 64  GSFEEYDTFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIVWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +K  TFNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNSK-VTFNYKTMKYLNNDKQEKSVWQIPICMGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDVQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMDRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+ S +   +  +T L  +   P++  +LL+ + L++ G  L ++       
Sbjct: 243 FYIKEAAKRLNSTRDKSDF-ITNLELETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301

Query: 316 VCADGTLISG-TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +++
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQRD 358


>gi|332672842|gb|AEE69659.1| modification methylase BabI [Helicobacter pylori 83]
          Length = 359

 Score =  366 bits (939), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 164/358 (45%), Positives = 225/358 (62%), Gaps = 3/358 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPDRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SF+ YD F   WL  C+RVLK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  GSFKEYDTFCLGWLKECQRVLKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +K  +FNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNSK-VSFNYKTMKYLNNDKQEKSVWQIPICIGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L ++       
Sbjct: 243 FYIKEAAKRLNNTRDKSDF-ITNLDLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301

Query: 316 VCADGTLISG-TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +KE 
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKEF 359


>gi|283953787|ref|ZP_06371318.1| hypothetical protein C414_000010156 [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794828|gb|EFC33566.1| hypothetical protein C414_000010156 [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 359

 Score =  365 bits (938), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 162/349 (46%), Positives = 226/349 (64%), Gaps = 2/349 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           KD I +GN + +L+ +P KS+DLIFADPPY +Q  G+L R +  +   V D WDKF S +
Sbjct: 3   KDIIFQGNCLEILKTIPDKSIDLIFADPPYFMQTQGELLRTNGEVFSGVNDDWDKFESLK 62

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD F + WL  CRR+LK + ++WVIGS+ NIFR+G ++Q+L FWILNDI+W K NP+PN
Sbjct: 63  AYDDFCKIWLSECRRILKDDASIWVIGSFQNIFRLGYIMQDLGFWILNDIIWNKPNPVPN 122

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           F+G RF N+HETLIW S    +K YTFNY  +K  N + Q +S W I IC G+ERL+  D
Sbjct: 123 FKGTRFCNSHETLIWCSKHKNSK-YTFNYKTMKFLNNNKQEKSIWNIGICIGNERLKGID 181

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K+H TQKPE LL +I++SSTK GD+ILDPFFG+GT+GA+AKKL R +IGIE ++ Y+ 
Sbjct: 182 GKKIHSTQKPEILLEKIILSSTKKGDLILDPFFGTGTTGAIAKKLGRYYIGIEQEKFYVK 241

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           IA  RI  +  + N E+T    +   P+V+   L+  G +   +   +   N    +   
Sbjct: 242 IAESRIRQINIIDN-EITRNELETKPPKVSLEELLNAGFLSENEKFYDKNKNYICYLVNG 300

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
             +    E+ SIH++ AK    E  NGW+++Y  K     SI++LR   
Sbjct: 301 NKVSDENEILSIHKMAAKYLNKENHNGWSYFYIFKNENFISIDSLRYEY 349


>gi|308064128|gb|ADO06015.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
           pylori Sat464]
          Length = 359

 Score =  365 bits (938), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 164/358 (45%), Positives = 225/358 (62%), Gaps = 3/358 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPDRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SF+ YD F   WL  C+RVLK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  GSFKEYDTFCLGWLKECQRVLKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +K  +FNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNSK-VSFNYKTMKYLNNDKQEKSVWQIPICIGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L ++       
Sbjct: 243 FYIKEAAKRLNNTRDKSDF-ITNLVLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301

Query: 316 VCADGTLISG-TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +KE 
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKEF 359


>gi|217034428|ref|ZP_03439841.1| hypothetical protein HP9810_11g10 [Helicobacter pylori 98-10]
 gi|216943098|gb|EEC22572.1| hypothetical protein HP9810_11g10 [Helicobacter pylori 98-10]
          Length = 359

 Score =  365 bits (938), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 164/358 (45%), Positives = 225/358 (62%), Gaps = 3/358 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPDRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SF+ YD F   WL  C+RVLK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  GSFKEYDTFCLGWLKECQRVLKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +K  +FNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNSK-VSFNYKTMKYLNNDKQEKSVWQIPICIGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDTQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L ++       
Sbjct: 243 FYIKEAAKRLNNTRDKSDF-ITNLDLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301

Query: 316 VCADGTLISG-TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +KE 
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKEF 359


>gi|207091630|ref|ZP_03239417.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
           pylori HPKX_438_AG0C1]
          Length = 359

 Score =  365 bits (937), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 162/358 (45%), Positives = 224/358 (62%), Gaps = 3/358 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SF+ YD F   WL  C+R+LK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  GSFKEYDTFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +K  TFNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNSK-VTFNYKTMKYLNNDKQEKSVWQIPICMGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S+TKP DI+LDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSTTKPKDIVLDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L +        
Sbjct: 243 FYIKEAAKRLNNTRDKSDF-ITNLELETKPPKIPMSLLISKQLLKIGDFLYSPNKEKICQ 301

Query: 316 VCADGTLISG-TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +K+ 
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKDF 359


>gi|208435249|ref|YP_002266915.1| adenine specific DNA methyltransferase [Helicobacter pylori G27]
 gi|208433178|gb|ACI28049.1| adenine specific DNA methyltransferase [Helicobacter pylori G27]
          Length = 359

 Score =  365 bits (937), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 165/358 (46%), Positives = 226/358 (63%), Gaps = 3/358 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P KSVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPNKSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SF+ YD F   WL  C+R+LK NG++ VIGS+HNIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  GSFKEYDTFCLGWLKECQRILKDNGSICVIGSFHNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +K  TFNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNSK-VTFNYKTMKYLNNDKQEKSVWQIPICMGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPE LL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDAQGKKVHSTQKPEVLLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  ATKR+ + +   +  +T L  +   P++  +LL+ + L++ G  L ++       
Sbjct: 243 FYIKEATKRLNNTRDKSDF-ITNLDLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301

Query: 316 VCADGTLISG-TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +K+ 
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNRTNHNGWKFFYAYYQNQFLLLDELRYICQKDF 359


>gi|254779898|ref|YP_003058004.1| Type II m6A methylase [Helicobacter pylori B38]
 gi|254001810|emb|CAX30048.1| Type II m6A methylase [Helicobacter pylori B38]
          Length = 359

 Score =  365 bits (936), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 162/358 (45%), Positives = 225/358 (62%), Gaps = 3/358 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P +SVD +FADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPNRSVDFVFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SF+ YD F   WL  C+R+LK NG++ VIGS+HNIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  GSFKEYDTFCLGWLKECQRILKDNGSICVIGSFHNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +K  TFNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNSK-VTFNYKTMKYLNNDKQEKSVWQIPICMGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S+TKP DI+LDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDARGKKVHSTQKPEALLKKIILSATKPKDIVLDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L +        
Sbjct: 243 FYIKEAAKRLNNTRDKSDF-ITNLELETKPPKIPMSLLISKQLLKIGDFLYSPNKEKICQ 301

Query: 316 VCADGTLISG-TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +K+ 
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKDF 359


>gi|261837505|gb|ACX97271.1| type II m6A methylase [Helicobacter pylori 51]
          Length = 359

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 163/358 (45%), Positives = 224/358 (62%), Gaps = 3/358 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPDRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SF+ YD F   WL  C+R+LK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  GSFKEYDTFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +K  +FNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNSK-VSFNYKTMKYLNNDKQEKSVWQIPICIGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S TKP DIILDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSVTKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L ++       
Sbjct: 243 FYIKEAAKRLNNTRDKSDF-ITNLDLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301

Query: 316 VCADGTLISG-TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +KE 
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKEF 359


>gi|297380534|gb|ADI35421.1| Modification methylase [Helicobacter pylori v225d]
          Length = 359

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 164/358 (45%), Positives = 225/358 (62%), Gaps = 3/358 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SF+ YD F   WL  C+RVLK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  GSFKEYDTFCLGWLKECQRVLKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +K  +FNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNSK-VSFNYKTMKYLNNDKQEKSVWQIPICIGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L ++       
Sbjct: 243 FYIKEAEKRLNNTRDKSDF-ITNLDLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301

Query: 316 VCADGTLISG-TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +KE 
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKEF 359


>gi|188528141|ref|YP_001910828.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
           pylori Shi470]
 gi|188144381|gb|ACD48798.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
           pylori Shi470]
          Length = 359

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 164/358 (45%), Positives = 225/358 (62%), Gaps = 3/358 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SF+ YD F   WL  C+RVLK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  GSFKEYDTFCLGWLKECQRVLKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +K  +FNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNSK-VSFNYKTMKYLNNDKQEKSVWQIPICIGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L ++       
Sbjct: 243 FYIKEAAKRLNNTRDKSDF-ITNLVLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301

Query: 316 VCADGTLISG-TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +KE 
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKEF 359


>gi|15645965|ref|NP_208144.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
           pylori 26695]
 gi|2314521|gb|AAD08395.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
           pylori 26695]
          Length = 359

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 163/357 (45%), Positives = 224/357 (62%), Gaps = 3/357 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDYWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SF+ YDAF   WL  C+R+LK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  GSFKEYDAFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +K   FNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNSK-VAFNYKTMKYLNNDKQEKSVWQIPICMGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L +        
Sbjct: 243 FYIKEAAKRLNNTRDKSDF-ITNLDLETKPPKIPMSLLISKQLLKIGDFLYSPNKEKICQ 301

Query: 316 VCADGTLISG-TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +K+
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKD 358


>gi|308062636|gb|ADO04524.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
           pylori Cuz20]
          Length = 359

 Score =  363 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 163/358 (45%), Positives = 224/358 (62%), Gaps = 3/358 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SF+ YD F   WL  C+RVLK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  GSFKEYDTFCLGWLKECQRVLKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +K  +FNY  +K  N   Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNSK-VSFNYKTMKYLNNGKQEKSVWQIPICIGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L ++       
Sbjct: 243 FYIKEAAKRLNNTRDKSDF-ITNLVLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301

Query: 316 VCADGTLISG-TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +KE 
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKEF 359


>gi|317179845|dbj|BAJ57631.1| adenine specific DNA methyltransferase [Helicobacter pylori F32]
          Length = 359

 Score =  363 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 162/358 (45%), Positives = 224/358 (62%), Gaps = 3/358 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SF+ YD F   WL  C+R+LK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  GSFKEYDTFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +K  +FNY  +K  N   Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNSK-VSFNYKTMKYLNNGKQEKSVWQIPICIGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRHFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L ++       
Sbjct: 243 FYIKEAAKRLNNTRDKSDF-ITNLDLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301

Query: 316 VCADGTLISG-TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +KE 
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKCLNKANHNGWKFFYAYYQNQFLLLDELRYICQKEF 359


>gi|308183462|ref|YP_003927589.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
           pylori PeCan4]
 gi|308065647|gb|ADO07539.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
           pylori PeCan4]
          Length = 359

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 163/357 (45%), Positives = 225/357 (63%), Gaps = 3/357 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SF+ YD F   WL  C+RVLK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  GSFKEYDTFCLGWLKECQRVLKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +K  +FNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNSK-VSFNYKTMKYLNNDKQEKSVWQIPICIGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+ S +   +  +T L  +   P++  +LL+ + L++ G  L ++       
Sbjct: 243 FYIKEAAKRLNSTRDKSDF-ITNLELETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301

Query: 316 VCADGTLISG-TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +++
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQRD 358


>gi|315453204|ref|YP_004073474.1| Adenine specific DNA methyltransferase [Helicobacter felis ATCC
           49179]
 gi|315132256|emb|CBY82884.1| Adenine specific DNA methyltransferase [Helicobacter felis ATCC
           49179]
          Length = 356

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 162/353 (45%), Positives = 234/353 (66%), Gaps = 3/353 (0%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           ++ I++G+  ++L+ L + SVD IFADPPY +Q +G+L R   +    V + WDKF  F 
Sbjct: 2   QNTILQGDCAALLKTLSSSSVDFIFADPPYFMQTSGELLRVGGTKFAGVAEEWDKFKDFA 61

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YD+F  AWL  C+RVLK NG++ VIGS+ NI+R+G ++Q+L FW++NDI+W KSNP+PN
Sbjct: 62  HYDSFCEAWLTECKRVLKTNGSICVIGSFQNIYRLGALMQDLGFWVINDIIWAKSNPVPN 121

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           F G R  NAHETL+W +   KA  +TFNY  LKA N D Q +S W IP+C G+ERL++K 
Sbjct: 122 FNGSRLCNAHETLLWCAKDKKA-SFTFNYKTLKALNGDKQEKSIWEIPLCVGAERLKDKQ 180

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G KLHPTQKPE LL ++L+ +T+PGD++LDPFFG+GT+GAVAK+L R+F+GIE   +YI 
Sbjct: 181 GHKLHPTQKPEKLLEKLLLMATRPGDLVLDPFFGTGTTGAVAKRLGRNFLGIEQDSNYIQ 240

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A  RI +  P+     + L  ++  P+V    LV+ G +Q GQ+L +  G     V   
Sbjct: 241 AALARIKNT-PIKMNAFSRLECEKKPPKVPMKTLVDLGYLQVGQVLCSPSGVEQCQVLQS 299

Query: 320 GTLIS-GTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
           G +      + SIH++ AK+      NGW+++Y +  G+L ++N LR L  K+
Sbjct: 300 GQVQDSSGAVLSIHKMSAKILKKINHNGWDYFYTKHEGQLTALNDLRYLYDKD 352


>gi|317176855|dbj|BAJ54644.1| adenine specific DNA methyltransferase [Helicobacter pylori F16]
          Length = 359

 Score =  362 bits (930), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 163/358 (45%), Positives = 225/358 (62%), Gaps = 3/358 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SF+ YD F   WL  C+R+LK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  GSFKEYDTFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +K  +FNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNSK-VSFNYKTMKYLNNDKQEKSVWQIPICIGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L ++       
Sbjct: 243 FYIKEAAKRLNNTRDKSDF-ITNLDLETKPPKIPMSLLISKQLLKIGDFLYSSSKEKICQ 301

Query: 316 VCADGTLISG-TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +KE 
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKEF 359


>gi|317181339|dbj|BAJ59123.1| adenine specific DNA methyltransferase [Helicobacter pylori F57]
          Length = 359

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 162/358 (45%), Positives = 224/358 (62%), Gaps = 3/358 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SF+ YD F   WL  C+R+LK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  GSFKEYDTFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +K  +FNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNSK-VSFNYKTMKYLNNDKQEKSVWQIPICIGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI    KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L ++       
Sbjct: 243 FYIKEVAKRLNNTRDKSDF-ITNLELETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301

Query: 316 VCADGTLISG-TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +KE 
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKEF 359


>gi|315586043|gb|ADU40424.1| site-specific DNA-methyltransferase (adenine-specific)
           [Helicobacter pylori 35A]
          Length = 359

 Score =  360 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 161/358 (44%), Positives = 224/358 (62%), Gaps = 3/358 (0%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P +SVD IFADPPY +Q   +L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPDRSVDFIFADPPYFMQTERELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SF+ YD F   WL  C+R+LK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  GSFKEYDTFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+PNF G+R  NAHETLIW +    +K  +FNY  +K  N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNSK-VSFNYKTMKYLNNDKQEKSVWQIPICIGNERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE   
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L ++       
Sbjct: 243 FYIKEAAKRLNNTRDKSDF-ITNLDLEAKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301

Query: 316 VCADGTLISG-TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
           V  +G +        SIH++ AK       NGW F+Y     +   ++ LR + +K+ 
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKDF 359


>gi|330813680|ref|YP_004357919.1| modification methylase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486775|gb|AEA81180.1| modification methylase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 350

 Score =  346 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 179/299 (59%), Positives = 233/299 (77%), Gaps = 2/299 (0%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           +NS   +K+KI++GNSI +L+K+P ++ DL+FADPPYNLQL+  L RPD+S VDAV D W
Sbjct: 2   KNSKNPYKNKILQGNSIEILKKIPDETFDLVFADPPYNLQLDKSLERPDNSKVDAVDDQW 61

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           D+FSSF+AYD FT  WL  CRRVLK NGT+WVIGSYHNIFR+G  +Q+LNFWILND+VW 
Sbjct: 62  DQFSSFKAYDLFTNQWLRECRRVLKKNGTIWVIGSYHNIFRVGKEIQDLNFWILNDVVWN 121

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K NPMPNF+G RF NAHETLIWA+   K+K YTFNY++LK  N+D Q+RSDW + ICSG+
Sbjct: 122 KRNPMPNFKGTRFTNAHETLIWAAKEQKSK-YTFNYNSLKCFNDDKQLRSDWELAICSGN 180

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           ER   K+G K H TQKPEALL R+++S+T   D+ILDPFFG+GT+GAVAKKL R+F+GIE
Sbjct: 181 ER-CKKNGTKAHSTQKPEALLYRVILSTTNKDDLILDPFFGTGTTGAVAKKLGRNFLGIE 239

Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
            ++ YI++A KRI  ++P+ +  L  +  KR E R+ F +LVE G+I+PG  L + + N
Sbjct: 240 KEKKYIEVAKKRIDKIRPIEDEYLKTIQKKRNEKRIPFGMLVESGIIEPGISLYDNKKN 298


>gi|313678807|ref|YP_004056547.1| site-specific DNA-methyltransferase (adenine-specific) [Mycoplasma
           bovis PG45]
 gi|312950107|gb|ADR24702.1| site-specific DNA-methyltransferase (adenine-specific) [Mycoplasma
           bovis PG45]
          Length = 374

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 146/368 (39%), Positives = 211/368 (57%), Gaps = 17/368 (4%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + II  + I  L++LP  S+DLIFADPPY ++ +  L R + +  + V D WDKF S E
Sbjct: 6   TNIIINADCIDALKQLPDNSIDLIFADPPYWMRTSNTLLRVEGTKFNGVEDEWDKFESNE 65

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y  FT+ WL  C RVLK NG+ WVIG    I+ IG ++Q L FWI+ND++W K+NP PN
Sbjct: 66  DYAKFTKNWLSECYRVLKKNGSFWVIGGMQCIYTIGGIMQELGFWIINDVIWHKTNPTPN 125

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS---------DWLIPICS 190
           F+G R QN+HETLIWA+ +  +K YTFNY   K  N +V   +          W I + +
Sbjct: 126 FKGTRLQNSHETLIWATKNQSSK-YTFNYKTAKELNINVADYNKGNRKQLGSVWSISVVN 184

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           G+ERL++ +G KLH TQKPE LL +I+  S+K  DI+LDPF G+ T+G VAK+  R +I 
Sbjct: 185 GNERLKDNEGIKLHSTQKPEELLYKIINISSKINDIVLDPFAGTMTTGKVAKQTGRKYIM 244

Query: 251 IEMKQDYIDIATKRIASV-QPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQ 309
           IE  + Y    T RI    + +G+IEL     K    +V    ++E   +  G+      
Sbjct: 245 IEQDEKYCHYGTNRIEKTKEKIGDIELATFDIK--PLKVGLKDMIENSFLHIGEQFYLKN 302

Query: 310 -GNISATVCADGTLI-SGTELGSIHRVGAKVSGSETC--NGWNFWYFEKLGELHSINTLR 365
             + +  + +DG L     +   IH   A++S  +    NG+++WY  +  +L SIN +R
Sbjct: 303 INHKNVYLNSDGKLTDDNGQTLDIHSGAAQLSNKKAHRVNGFDYWYVIRENKLVSINEIR 362

Query: 366 ILVRKELY 373
            L R+ L 
Sbjct: 363 ELYREHLS 370


>gi|183508442|ref|ZP_02689152.2| DNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|182675852|gb|EDT87757.1| DNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697]
          Length = 363

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 152/360 (42%), Positives = 216/360 (60%), Gaps = 7/360 (1%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN--GQLYRPDHSLVDAVTDSWDK 74
             +K+KI+ G +  ++++LP K+ D  F DPPY LQ N   +LYR + +  +   D WDK
Sbjct: 1   MNYKNKILVGETTLIMKELPEKTFDFCFTDPPYFLQTNENKKLYRVEGTKYEGTNDEWDK 60

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
           F S E+Y  FT+ WL    R+LK +GT+ VI     I+ IG +L+ L FWI+NDI+W+KS
Sbjct: 61  FDSIESYKKFTKCWLSEVMRLLKDDGTICVISGMQTIYEIGNILKELGFWIINDIIWQKS 120

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           NP PNF G R  N+HETLIWA  S  +K YTFNY   K  N   QM S W   +CSG+ER
Sbjct: 121 NPTPNFMGSRLNNSHETLIWAKKSKNSK-YTFNYKTGKYLNNGKQMGSVWNFSVCSGNER 179

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L++++G KLH TQKPE+LL RI+   TK GD++LDPF G+ T+ AVAKK  R+F  IE  
Sbjct: 180 LKDENGLKLHNTQKPESLLYRIITLFTKKGDLVLDPFGGTMTTAAVAKKTGRNFTMIEKD 239

Query: 255 QDYIDIATKRIASVQ-PLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNIS 313
           + Y+     RI ++   +G +E +    K    RV+   ++  G  + G+   N+ G  +
Sbjct: 240 EKYVKYGLARINNISAKIGVVENSFFDQK--PIRVSMFEMISDGYFKLGEYFINSNGEKA 297

Query: 314 ATVCADGTLISGTELGSIHRVGAKVSGSE-TCNGWNFWYFEKLGELHSINTLRILVRKEL 372
               A+G L    E+ S+H V AK+ G E   N +N+ + E+ GE+ SIN +R   R+ L
Sbjct: 298 KLAKANGWLEYQGEINSMHEVAAKMIGRERRVNAFNYLFVERDGEIISINKIRENYRQHL 357


>gi|38906136|gb|AAR27819.1| adenine DNA methyltransferase [Staphylococcus sp. L1]
          Length = 350

 Score =  325 bits (832), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 159/349 (45%), Positives = 224/349 (64%), Gaps = 5/349 (1%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV-TDSWDKFS 76
            + + I++G+ I  L+ + + S+DLIFADPPYN+Q+ G+L R + S  + V  +SWDKF 
Sbjct: 4   NYINSILQGDCIEKLKLIESNSIDLIFADPPYNMQIQGELTRVNGSSFNGVSNESWDKFD 63

Query: 77  SFEAYDAFTRAWLLACRRVLK-PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
           S +AY  F R WL+ C+R+LK  N ++W+IGSY NI  IG +LQ L FW++NDI+W+KSN
Sbjct: 64  SIKAYKDFCRKWLIECQRILKSKNSSIWIIGSYQNIHIIGDLLQELGFWLINDIIWKKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P PNFRG +F NA ETL+WA+PS K K YTFNY  +K  N   QM S W IP+ SGSERL
Sbjct: 124 PTPNFRGTKFTNAQETLLWATPSKKTK-YTFNYKTMKNINNGKQMTSIWKIPVASGSERL 182

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++ +G KLH TQKPE LL  I++SSTK GD ILDPF G+GT+  ++KKL R++IGIE  +
Sbjct: 183 KDVEGNKLHQTQKPEKLLYNIIISSTKKGDTILDPFLGTGTTATISKKLGRNYIGIEQDK 242

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            YI  A +RI +   + +  +  +  K+   RV F  LVE G I   + +        A 
Sbjct: 243 KYIHYAEQRIKNQVVIDDDYVNAVFDKKL-IRVPFKKLVEEGFIDKNEYIYFNNTEEYAV 301

Query: 316 VCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTL 364
           +  D  L+   +  SIH +   + G E  NGWN+WY ++  +++   +L
Sbjct: 302 ISDDKELLYNGK-HSIHSLAGILKGLERANGWNYWYVKRNNKIYFYRSL 349


>gi|291320655|ref|YP_003515920.1| modification methylase [Mycoplasma agalactiae]
 gi|290752991|emb|CBH40967.1| Modification methylase [Mycoplasma agalactiae]
          Length = 374

 Score =  324 bits (830), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 142/368 (38%), Positives = 211/368 (57%), Gaps = 17/368 (4%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + II  + I  L+K+P  S+DLIFADPPY ++ +  L+R + +  + V D WDKF S +
Sbjct: 6   TNVIINADCIEALKKIPDNSIDLIFADPPYWMRTSKTLFRVEGTKFNGVEDEWDKFDSND 65

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y  FT+ WL  C RVLKPNG+ WVIG    I+ IG ++Q+L FWI+ND++W K+NP PN
Sbjct: 66  DYVQFTKKWLSECHRVLKPNGSFWVIGGMQCIYTIGGLMQDLGFWIINDVIWHKTNPTPN 125

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS---------DWLIPICS 190
           F+G R QN+HETLIWA+ + K+K YTFNY   K  N +V   +          W I + +
Sbjct: 126 FKGTRLQNSHETLIWATKNQKSK-YTFNYKTAKELNINVADYNKGNRKQLGSVWSISVVN 184

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           GSERL++ +G KLH TQKPE LL +I+  ++K  DI+LDPF G+ T+G +AK+  R +I 
Sbjct: 185 GSERLKDNEGLKLHSTQKPEELLYKIININSKINDIVLDPFAGTMTTGKIAKQTGRKYIM 244

Query: 251 IEMKQDYIDIATKRIASV-QPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQ 309
           IE  + Y      RI    + +G+IEL     K    +V    ++    +  G+      
Sbjct: 245 IEQDEKYCHYGANRIEKTKEKIGDIELATFDIK--PLKVDLKDMINDNFLHLGEQFYLKN 302

Query: 310 -GNISATVCADGTLISGT-ELGSIHRVGAKVSGSET--CNGWNFWYFEKLGELHSINTLR 365
             + +  + +DG L     E+  IH   A +   +    NG+N+W+  +   + SI+ +R
Sbjct: 303 INHKNVYLNSDGKLTDDNEEVHDIHSKAALLLNKKASRVNGFNYWHVMRDNRIVSIDEIR 362

Query: 366 ILVRKELY 373
            L R+ L 
Sbjct: 363 NLYREYLS 370


>gi|257456468|ref|ZP_05621664.1| DNA methylase [Treponema vincentii ATCC 35580]
 gi|257446128|gb|EEV21175.1| DNA methylase [Treponema vincentii ATCC 35580]
          Length = 372

 Score =  323 bits (827), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 148/367 (40%), Positives = 210/367 (57%), Gaps = 21/367 (5%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
            II GN I  L+K+ A S++LIFADPPY ++++G L R + +  D   D WD +F S + 
Sbjct: 5   TIINGNCIEELKKIEANSINLIFADPPYWMRVSGVLKRVEGTDYDGCADEWDNQFESLDD 64

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  FTR WL  C RVL PNG++WVIG    I+ IG  +Q + +W++NDI+W K+NP PNF
Sbjct: 65  YIEFTRNWLKECYRVLSPNGSMWVIGGMQCIYSIGNAMQEIGYWLINDIIWYKTNPTPNF 124

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD------------WLIPI 188
            G R  N+HETLIWA+ S KAK YTF+Y   K  N D  + SD            W  P+
Sbjct: 125 MGTRLNNSHETLIWATKSQKAK-YTFHYKTAKELNTDTVLVSDYEKGIRKQMGSIWRFPV 183

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
           CSG+ER+++  G+KLH TQKP ALL RI+   +  GD +LDPF G+ T+GA A +  R+F
Sbjct: 184 CSGNERIKDDAGKKLHSTQKPFALLYRIVAICSNIGDTVLDPFGGTFTTGAAAIQCGRNF 243

Query: 249 IGIEMKQDYIDIATKRIASVQPL-GNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTN 307
           IGI+  + Y     KR++  + + GNIE      K    +V F  L++   + P +    
Sbjct: 244 IGIDASELYCKYGEKRLSETKEMIGNIEKATFDIK--PIKVDFIDLIKNNFLLPDEKFFL 301

Query: 308 AQGNISATVCADGT--LISGTELGSIHRVGAKVSGSET--CNGWNFWYFEKLGELHSINT 363
              +  A + +DG   L S   +  IH+  A +   +    NG++FWY E+  +  SI  
Sbjct: 302 KNSDSFAILKSDGKIELPSKNIVTDIHKGAAILGNKKAARVNGFDFWYVERNNKRKSIKD 361

Query: 364 LRILVRK 370
           +R   RK
Sbjct: 362 IREDYRK 368


>gi|294155798|ref|YP_003560182.1| adenine-specific DNA modification methyltransferase [Mycoplasma
           crocodyli MP145]
 gi|291599976|gb|ADE19472.1| adenine-specific DNA modification methyltransferase [Mycoplasma
           crocodyli MP145]
          Length = 375

 Score =  322 bits (825), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 155/372 (41%), Positives = 221/372 (59%), Gaps = 18/372 (4%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            E K+ +I  +SI  ++ L   S+DLIFADPPY ++  G L R + +  D   D WDKF+
Sbjct: 1   MELKNILINDDSIEYMKSLDENSIDLIFADPPYWMRTTGTLKRVEGTNFDGCNDEWDKFN 60

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           S + Y  FT+ WL+ C+R+LK +G+++VIG    I+ IG ++Q L+FW++NDI+W KSNP
Sbjct: 61  SLKDYKEFTKKWLIECKRILKKDGSIFVIGGMQCIYTIGAIMQELDFWLINDIIWHKSNP 120

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN------------EDVQMRSDW 184
            PNF+G R  N+HET+IWA+ S K+K  TFNY   K  N            E  QM S W
Sbjct: 121 TPNFKGTRLNNSHETIIWAAKSIKSK-VTFNYKTAKELNNENIEISKFTKGERKQMGSVW 179

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
             PICSG ERL++++  KLH TQKPEALL RI+  S+K GD ILDPF G+ T+GA+AKK+
Sbjct: 180 KFPICSGLERLKDEEYNKLHSTQKPEALLYRIIAISSKIGDTILDPFAGTMTTGAMAKKM 239

Query: 245 RRSFIGIEMKQDYIDIATKRIASVQPL-GNIELTVLTGKRTEPRVAFNLLVERGLIQPGQ 303
            R+ I IE    Y     KR+   + L G+IE ++   K T  +V F  L+ +  ++ G 
Sbjct: 240 GRNCIMIEKDLKYFTHGKKRVDFTKMLIGDIEKSIFDNKPT--KVHFKDLISKNYLKVGD 297

Query: 304 ILTNAQGNISATVCADGTLISGTELGSIHRVGAKV--SGSETCNGWNFWYFEKLGELHSI 361
             TN   +  AT+  DG L    E+  IH   AK     ++  NG+++WY  +   L  +
Sbjct: 298 KFTNLSNDDYATLRDDGKLYYNNEVLDIHTCAAKFANKNADRINGFDYWYVVRNNHLVFL 357

Query: 362 NTLRILVRKELY 373
           N +R   RK++ 
Sbjct: 358 NDIREKARKDIE 369


>gi|148377930|ref|YP_001256806.1| modification methylase [Mycoplasma agalactiae PG2]
 gi|148291976|emb|CAL59368.1| Modification methylase [Mycoplasma agalactiae PG2]
          Length = 376

 Score =  321 bits (824), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 143/368 (38%), Positives = 210/368 (57%), Gaps = 17/368 (4%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + II  + I  L+ LP  S+DLIFADPPY ++ +  L+R + +  + V D WDKF S +
Sbjct: 6   TNVIINADCIEALKVLPDNSIDLIFADPPYWMRTSKTLFRVEGTKFNGVEDEWDKFDSND 65

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y  FT+ WL  C RVLKPNG+ WVIG    I+ IG ++Q+L FWI+ND++W K+NP PN
Sbjct: 66  DYVQFTKKWLSECHRVLKPNGSFWVIGGMQCIYTIGGLMQDLGFWIINDVIWHKTNPTPN 125

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS---------DWLIPICS 190
           F+G R QN+HETLIWA+ + K+K YTFNY   K  N +V   +          W I + +
Sbjct: 126 FKGTRLQNSHETLIWATKNQKSK-YTFNYKTAKELNINVADYNKGSRNQLGSVWSISVVN 184

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           GSERL++ +G KLH TQKPE LL +I+  S+K  DI+LDPF G+ T+G +AK+  R +I 
Sbjct: 185 GSERLKDNEGLKLHSTQKPEELLYKIINISSKINDIVLDPFAGTMTTGKIAKQTGRKYIM 244

Query: 251 IEMKQDYIDIATKRIASV-QPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQ 309
           IE  + Y      RI    + +G+IEL V   K    +V    ++    +  G+      
Sbjct: 245 IEQDEKYCHYGANRIEKTKEKIGDIELAVFDIK--PLKVGLKDMINDNFLHLGEQFYLKN 302

Query: 310 -GNISATVCADGTLI-SGTELGSIHRVGAKVSGSET--CNGWNFWYFEKLGELHSINTLR 365
             + +  + +DG L     E+  IH   A +   +    NG+++W   +   + SI+ +R
Sbjct: 303 INHKNVYLNSDGKLTDDNGEVHDIHSKAALLLNKKASRVNGFDYWNVMRDNRIVSIDEIR 362

Query: 366 ILVRKELY 373
            L R+ L 
Sbjct: 363 NLYREYLS 370


>gi|83682424|emb|CAJ31338.1| hypothetical protein [Helicobacter pylori]
          Length = 315

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 147/316 (46%), Positives = 198/316 (62%), Gaps = 3/316 (0%)

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
           L R + +    V D WDKF SFE YD F   WL  C+R+LK NG++ VIGS+ NIFRIG 
Sbjct: 1   LKRFEGTKFQGVEDHWDKFGSFEEYDTFCLGWLKECQRILKDNGSICVIGSFQNIFRIGF 60

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
            LQNL FWILNDIVW KSNP+PNF G+R  NAHETLIW +    +K  TFNY  +K  N 
Sbjct: 61  HLQNLGFWILNDIVWHKSNPVPNFAGKRLCNAHETLIWCAKHKNSK-VTFNYKTMKYLNN 119

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
           D Q +S W IPIC G+ERL++  G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT
Sbjct: 120 DKQEKSVWQIPICMGNERLKDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGT 179

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
           +GAVAK + R FIGIE    YI  A KR+ S +   +  +T L  +   P++  +LL+ +
Sbjct: 180 TGAVAKSMNRYFIGIEKDSFYIKEAAKRLNSARDKSDF-ITNLDLETKPPKIPMSLLISK 238

Query: 297 GLIQPGQILTNAQGNISATVCADGTLISG-TELGSIHRVGAKVSGSETCNGWNFWYFEKL 355
            L++ G  L ++       V  +G +        SIH++ AK       NGW F+Y    
Sbjct: 239 QLLKIGDFLYSSNKERICQVLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQ 298

Query: 356 GELHSINTLRILVRKE 371
            +   ++ LR + +++
Sbjct: 299 NQFLLLDELRYICQRD 314


>gi|218661107|ref|ZP_03517037.1| site-specific DNA-methyltransferase (adenine-specific) protein
           [Rhizobium etli IE4771]
          Length = 252

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 171/224 (76%), Positives = 206/224 (91%)

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
           PD SLVDAV D WD+F+SFEAYDAFTRAWLLACRRVLKP G++WVIGSYHNIFR+G  LQ
Sbjct: 29  PDQSLVDAVDDEWDQFASFEAYDAFTRAWLLACRRVLKPTGSIWVIGSYHNIFRVGATLQ 88

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
           +LNFWILNDI+WRK+NPMPNF+GRRFQNAHET+IWASP+ KAKGYTFNYDA+KAAN+DVQ
Sbjct: 89  DLNFWILNDIIWRKTNPMPNFKGRRFQNAHETMIWASPNAKAKGYTFNYDAMKAANDDVQ 148

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
           MRSDWL PIC+G+ERL+ +DG+K+HPTQKPEALL+R++++STKPGDI+LDPFFGSGT+GA
Sbjct: 149 MRSDWLFPICNGNERLKGEDGKKVHPTQKPEALLARVIMASTKPGDIVLDPFFGSGTTGA 208

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
           VAK+L   F+G+E +QDYID A+  IA+V+PLG  ELTV+TGK+
Sbjct: 209 VAKRLGCKFVGMEREQDYIDAASASIAAVEPLGKAELTVMTGKK 252


>gi|160940911|ref|ZP_02088251.1| hypothetical protein CLOBOL_05803 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436155|gb|EDP13922.1| hypothetical protein CLOBOL_05803 [Clostridium bolteae ATCC
           BAA-613]
          Length = 265

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 108/248 (43%), Positives = 154/248 (62%), Gaps = 6/248 (2%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+  G+ + +L K+  +SVD+IFADPPY L  NG +      +V     SWD+   F+  
Sbjct: 19  KLYLGDCLELLRKMKPESVDMIFADPPYFLSNNG-ITCQGGRMVSVNKASWDEGGDFKEN 77

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            AF R W+  CRRVLKP GT+W+ G+ HNI+ IG  LQ   + I+N+I W+K+NP PN  
Sbjct: 78  HAFNRRWIRMCRRVLKPGGTIWISGTLHNIYSIGMALQQERYKIINNITWKKTNPPPNLA 137

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R F ++ ET++WA    K   + FNY+ +K  N   QM+  W   +   SE+   +   
Sbjct: 138 CRCFTHSTETILWARKDEKKARHLFNYEQMKQMNGGKQMKDVWEGNLTRPSEKWAGR--- 194

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKPE LL RI+++STK GD++LDPF GSGT+G V+ K  R FIGI+  ++Y+DIA
Sbjct: 195 --HPTQKPEYLLERIILASTKKGDVVLDPFCGSGTTGVVSGKYGRQFIGIDNNEEYLDIA 252

Query: 262 TKRIASVQ 269
            +R+  +Q
Sbjct: 253 KRRLDQIQ 260


>gi|295399896|ref|ZP_06809877.1| DNA methylase N-4/N-6 domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312111585|ref|YP_003989901.1| DNA methylase N-4/N-6 domain protein [Geobacillus sp. Y4.1MC1]
 gi|294978299|gb|EFG53896.1| DNA methylase N-4/N-6 domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311216686|gb|ADP75290.1| DNA methylase N-4/N-6 domain protein [Geobacillus sp. Y4.1MC1]
          Length = 267

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 112/260 (43%), Positives = 155/260 (59%), Gaps = 9/260 (3%)

Query: 12  NQNSIFEWKDKI--IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
               IF ++D +  I GN I  L +L   SVD+IFADPPY L  +G +      +V    
Sbjct: 9   KDEEIFYYQDNLLLINGNCIDWLNRLEKNSVDMIFADPPYFLS-SGGITCHSGKMVSVDK 67

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
             WDK S+     +F + WL AC+RVLK  GT+W+ G+ HNI+ IG  L  L + ILN+I
Sbjct: 68  GEWDKPSTLNEIHSFNKEWLYACKRVLKDGGTIWISGTLHNIYSIGFALNELEYKILNNI 127

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
            W K N  PN   R F ++ ET++WA    K   Y FNY+ +K  N   QMR  W IP  
Sbjct: 128 TWYKKNASPNLSCRYFTHSTETILWARKGKKTSHY-FNYNLMKEMNGGKQMRDVWEIPTT 186

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
             SE+   +     HPTQKP  LL RI+++STK  DI+LDPF GSGT+G VAKKL R +I
Sbjct: 187 KKSEKAHGR-----HPTQKPIELLERIILASTKINDIVLDPFNGSGTTGVVAKKLNRRYI 241

Query: 250 GIEMKQDYIDIATKRIASVQ 269
           GI+++++Y+++  KR+ + +
Sbjct: 242 GIDIEKEYLELTIKRLEATE 261


>gi|13542231|ref|NP_111919.1| adenine-specific DNA methylase [Thermoplasma volcanium GSS1]
          Length = 278

 Score =  245 bits (626), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 111/268 (41%), Positives = 164/268 (61%), Gaps = 2/268 (0%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR- 59
           M  + S  IN  + +  E KD ++ G+S+ ++ ++     DLIF DPPY LQ+  +  + 
Sbjct: 1   MPIEKSSRINGGKMNREEVKDSVLLGDSLEIMRRIDDCIYDLIFLDPPYYLQMTPKRLKR 60

Query: 60  -PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
             + S+   V + WD F SFEAYD+F  + L   +R++    T+W IG+YHNIFRIG ++
Sbjct: 61  WNNRSVPQTVREYWDAFPSFEAYDSFISSVLKEAKRLMSDTSTIWAIGTYHNIFRIGKIM 120

Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
           Q++ FWILND+VW K+NPMPN+ G RF N+ ETLIWA+   + K YT+N +  K      
Sbjct: 121 QDMGFWILNDVVWIKTNPMPNWLGVRFTNSTETLIWATKGKEQKNYTYNRNLAKEFGLGK 180

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
              + W++    G+ER+R+++ + +HP QKP  L+ RI++SSTK GD+ILDPF G GT+G
Sbjct: 181 TANNVWVMKTSRGNERVRDENRKSVHPAQKPLELMKRIILSSTKEGDLILDPFAGVGTTG 240

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIA 266
             A  L R+F  IE    Y      R +
Sbjct: 241 VAASMLGRNFTLIEKDPVYYRAMLSRFS 268


>gi|241888632|ref|ZP_04775939.1| DNA methylase [Gemella haemolysans ATCC 10379]
 gi|241864655|gb|EER69030.1| DNA methylase [Gemella haemolysans ATCC 10379]
          Length = 258

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 110/243 (45%), Positives = 156/243 (64%), Gaps = 6/243 (2%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G++  V+EK+ ++S+D+IFADPPY L  +G        +V      WDK SSFE    F 
Sbjct: 15  GDTFEVIEKIKSESIDMIFADPPYFLSNDG-FSNSGGKVVSVNKGDWDKISSFEEKHNFN 73

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
           R W+   +RVLKPNGT+W+ G+ HNI+ +G  L+   F ILN+I W+K+NP PN   R F
Sbjct: 74  REWIRKAKRVLKPNGTIWISGTLHNIYSVGMALEQEGFKILNNITWQKTNPAPNLSCRYF 133

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
            ++ ET++WA  + K   + +NYD +K  N   QM+  W  P+   SE+   K     HP
Sbjct: 134 THSTETILWARKADKYARHYYNYDLMKEINNGKQMKDVWTGPLTKISEKWAGK-----HP 188

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           TQKPE LL RI+++ST+ GD +LDPF GSGT+G VAK+L R F GI+ K++Y+DIA +R+
Sbjct: 189 TQKPEYLLERIILASTEEGDYVLDPFVGSGTTGVVAKRLGRKFAGIDFKEEYLDIAKRRL 248

Query: 266 ASV 268
            +V
Sbjct: 249 EAV 251


>gi|309801799|ref|ZP_07695917.1| DNA (cytosine-5-)-methyltransferase [Bifidobacterium dentium
           JCVIHMP022]
 gi|308221553|gb|EFO77847.1| DNA (cytosine-5-)-methyltransferase [Bifidobacterium dentium
           JCVIHMP022]
          Length = 261

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 102/246 (41%), Positives = 153/246 (62%), Gaps = 6/246 (2%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++  G++ S+L K+  +SVD+IFADPPY L  NG +      +V      WDK +SFEA 
Sbjct: 19  ELFLGDTFSLLPKMQPESVDMIFADPPYFLS-NGGISCHSGRMVSVDKGDWDKGASFEAK 77

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F R W+  C+ VL PNGT+W+ G+ HNI+ +G  L+   F I+N+I W+K+NP PN  
Sbjct: 78  HEFNRNWIRLCKTVLAPNGTIWISGTLHNIYSVGVALEQEGFKIINNITWQKTNPPPNLA 137

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R F ++ ET++WA  + +   + FNY  +K  N   QM+  W   +    E++  K   
Sbjct: 138 CRCFTHSTETVLWAQRNDRCSKHFFNYALMKEMNGGKQMKDVWTGSLTPKREKIEGK--- 194

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP  LL RI++SST+PGD++LDPF GS T+G  A+KL R +IGI+ + +YI+++
Sbjct: 195 --HPTQKPLYLLERIILSSTEPGDLVLDPFCGSSTTGVAAQKLGRKYIGIDNEPEYIELS 252

Query: 262 TKRIAS 267
            +R+  
Sbjct: 253 KRRLQK 258


>gi|19347659|gb|AAL86021.1| BsmIMA [Geobacillus stearothermophilus]
          Length = 275

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 104/269 (38%), Positives = 151/269 (56%), Gaps = 18/269 (6%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + EW + I     I  ++KLP  S+DL+ ADPPYNL   G+    +   +  +  +W+K 
Sbjct: 2   LSEWINTIQNTECIQSMKKLPDNSIDLVIADPPYNLSKGGKWKWDNSKKLVGMGGNWNKV 61

Query: 76  S------SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
                  +FE Y  FT +WLL  +R+LKP G+LW+ G+YHN+  I  + Q L   I+N+I
Sbjct: 62  MENWDDMTFEEYWEFTESWLLEVKRILKPTGSLWIFGTYHNMGIINVVCQKLGIEIINEI 121

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY--------DALKAANEDVQMR 181
           +W K N  PN  GRRF  +HET++W     K + Y FNY              +   QMR
Sbjct: 122 IWYKRNAFPNLSGRRFTASHETILWCHVGQKKREYYFNYEYVKNASFPEDMLKSPGKQMR 181

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
           + W IP    + + +++     HPTQKP  LL RI+++++K GDI L PF G G+    A
Sbjct: 182 TVWDIP----NNKQKDELKFGKHPTQKPLRLLHRIILATSKEGDICLAPFSGVGSECVAA 237

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQP 270
           K+L R+FIG E+ ++Y DI+ KRI S Q 
Sbjct: 238 KELGRNFIGFEINKEYYDISLKRIESTQK 266


>gi|307705510|ref|ZP_07642364.1| modification methylase DpnIIB [Streptococcus mitis SK597]
 gi|307620968|gb|EFO00051.1| modification methylase DpnIIB [Streptococcus mitis SK597]
          Length = 253

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 111/252 (44%), Positives = 157/252 (62%), Gaps = 8/252 (3%)

Query: 20  KDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           KDK  ++  ++  +L K+  +S+D+IFADPPY L  NG +      +V      WDK SS
Sbjct: 8   KDKMILVHADTFKLLSKMKPESMDMIFADPPYFLS-NGGISNSGGQVVSVDKGDWDKISS 66

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           FE    F R W+   + VLKPNGT+W+ GS HNI+ +G  L+   F ILN+I W+K+NP 
Sbjct: 67  FEEKHEFNRKWIRLAKEVLKPNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKTNPA 126

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PN   R F ++ ET++WA  + K   + +NYD +K  N+  QM+  W   +   +E+   
Sbjct: 127 PNLSCRYFTHSTETILWARKNDKKARHYYNYDLMKELNDGKQMKDVWTGALTKKAEKWAG 186

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K     HPTQKPE LL RI+++STK GD ILDPF GSGT+G VAK+L R FIGI+ +++Y
Sbjct: 187 K-----HPTQKPEYLLERIILASTKEGDYILDPFVGSGTTGVVAKRLGRRFIGIDAEKEY 241

Query: 258 IDIATKRIASVQ 269
           + IA KR+   +
Sbjct: 242 LKIARKRLEYTE 253


>gi|289167373|ref|YP_003445642.1| DNA adenine methyltransferase, (adenine-specific methyltransferase
           DpnIIB) [Streptococcus mitis B6]
 gi|322377535|ref|ZP_08052026.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sp. M334]
 gi|288906940|emb|CBJ21774.1| DNA adenine methyltransferase, (adenine-specific methyltransferase
           DpnIIB) [Streptococcus mitis B6]
 gi|321281735|gb|EFX58744.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sp. M334]
          Length = 263

 Score =  239 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 111/249 (44%), Positives = 156/249 (62%), Gaps = 8/249 (3%)

Query: 20  KDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           KDK  ++  ++  +L K+  +S+D+IFADPPY L  NG +      +V      WDK SS
Sbjct: 20  KDKMILVHADTFKLLSKMKPESMDMIFADPPYFLS-NGGISNSGGQVVSVDKGDWDKISS 78

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           FE    F R W+   + VLKPNGT+W+ GS HNI+ +G  L+   F ILN+I W+K+NP 
Sbjct: 79  FEEKHEFNRKWIRLAKEVLKPNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKTNPA 138

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PN   R F ++ ET++WA  + K   + +NYD +K  N+  QM+  W   +   +E+   
Sbjct: 139 PNLSCRYFTHSTETILWARKNDKKARHYYNYDLMKELNDGKQMKDVWTGALTKKAEKWAG 198

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K     HPTQKPE LL RI+++STK GD ILDPF GSGT+G VAK+L R FIGI+ +++Y
Sbjct: 199 K-----HPTQKPEYLLERIILASTKEGDYILDPFVGSGTTGVVAKRLGRRFIGIDAEKEY 253

Query: 258 IDIATKRIA 266
           + IA KR+ 
Sbjct: 254 LKIAKKRLE 262


>gi|14327902|ref|NP_116732.1| LlaDCHIB [Lactococcus lactis]
 gi|1709051|sp|P50178|MTL22_LACLC RecName: Full=Modification methylase LlaDCHIB; Short=M.LlaDCHI B;
           Short=M.LlaDCHIB; AltName: Full=Adenine-specific
           methyltransferase LlaDCHIB; AltName: Full=M.LlaII B
 gi|794257|gb|AAB06312.1| LlaDCHIB [Lactococcus lactis]
          Length = 269

 Score =  238 bits (608), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 110/245 (44%), Positives = 153/245 (62%), Gaps = 6/245 (2%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++  +S  +LEK+  +S+D+IFADPPY L  NG +      +V      WDK SSFE   
Sbjct: 25  LVHADSFKLLEKIKPESMDMIFADPPYFLS-NGGMSNSGGQIVSVDKGDWDKISSFEEKH 83

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R W+   R VLKPNGT+WV GS HNI+ +G  L+   F ILN+I W+K+NP PN   
Sbjct: 84  DFNRRWIRLARLVLKPNGTIWVSGSLHNIYSVGMALEQEGFKILNNITWQKTNPAPNLSC 143

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ ET++WA  + K   + +NY+ +K  N+  QM+  W   +   SE+   K    
Sbjct: 144 RYFTHSTETILWARKNDKKSRHYYNYELMKEFNDGKQMKDVWTGSLTKKSEKWAGK---- 199

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE +L RI+++STK  D ILDPF GSGT+G VAK+L R FIGI+ +++Y+ IA 
Sbjct: 200 -HPTQKPEYILERIILASTKENDYILDPFVGSGTTGVVAKRLGRKFIGIDSEKEYLKIAK 258

Query: 263 KRIAS 267
           KR+  
Sbjct: 259 KRLNK 263


>gi|148998713|ref|ZP_01826151.1| putative adenine-specific DNA methylase [Streptococcus pneumoniae
           SP11-BS70]
 gi|149006496|ref|ZP_01830195.1| putative adenine-specific DNA methylase [Streptococcus pneumoniae
           SP18-BS74]
 gi|168491835|ref|ZP_02715978.1| DNA methylase [Streptococcus pneumoniae CDC0288-04]
 gi|168574962|ref|ZP_02720925.1| DNA methylase [Streptococcus pneumoniae MLV-016]
 gi|169832858|ref|YP_001695216.1| DNA methylase [Streptococcus pneumoniae Hungary19A-6]
 gi|194398425|ref|YP_002038438.1| DNA adenine methyltransferase DpnII [Streptococcus pneumoniae G54]
 gi|225857437|ref|YP_002738948.1| DNA methylase [Streptococcus pneumoniae P1031]
 gi|225859611|ref|YP_002741121.1| DNA methylase [Streptococcus pneumoniae 70585]
 gi|307068464|ref|YP_003877430.1| DNA modification methylase [Streptococcus pneumoniae AP200]
 gi|307128045|ref|YP_003880076.1| DNA methylase [Streptococcus pneumoniae 670-6B]
 gi|147755407|gb|EDK62456.1| putative adenine-specific DNA methylase [Streptococcus pneumoniae
           SP11-BS70]
 gi|147761794|gb|EDK68757.1| putative adenine-specific DNA methylase [Streptococcus pneumoniae
           SP18-BS74]
 gi|168995360|gb|ACA35972.1| DNA methylase [Streptococcus pneumoniae Hungary19A-6]
 gi|183573905|gb|EDT94433.1| DNA methylase [Streptococcus pneumoniae CDC0288-04]
 gi|183578786|gb|EDT99314.1| DNA methylase [Streptococcus pneumoniae MLV-016]
 gi|194358092|gb|ACF56540.1| DNA adenine methyltransferase DpnII [Streptococcus pneumoniae G54]
 gi|225720270|gb|ACO16124.1| DNA methylase [Streptococcus pneumoniae 70585]
 gi|225724476|gb|ACO20328.1| DNA methylase [Streptococcus pneumoniae P1031]
 gi|301794813|emb|CBW37269.1| DNA methylase [Streptococcus pneumoniae INV104]
 gi|306410001|gb|ADM85428.1| DNA modification methylase [Streptococcus pneumoniae AP200]
 gi|306485107|gb|ADM91976.1| DNA methylase [Streptococcus pneumoniae 670-6B]
 gi|332073000|gb|EGI83481.1| DNA methylase family protein [Streptococcus pneumoniae GA17545]
 gi|332201259|gb|EGJ15330.1| DNA methylase family protein [Streptococcus pneumoniae GA47901]
          Length = 256

 Score =  238 bits (608), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 110/250 (44%), Positives = 155/250 (62%), Gaps = 8/250 (3%)

Query: 20  KDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           K+K  ++  ++   L K+  +S+D+IFADPPY L  NG +      +V      WDK SS
Sbjct: 8   KNKMILVHSDTFKFLSKMKPESMDMIFADPPYFLS-NGGISNSGGQVVSVDKGDWDKISS 66

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           FE    F R W+   + VLKPNGT+W+ GS HNI+ +G  L+   F ILN+I W+K+NP 
Sbjct: 67  FEEKHEFNRKWIRLAKEVLKPNGTVWISGSLHNIYSVGMALEQEGFKILNNITWQKTNPA 126

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PN   R F ++ ET++WA  + K   + +NYD +K  N+  QM+  W   +    E+   
Sbjct: 127 PNLSCRYFTHSTETILWARKNDKKARHYYNYDLMKELNDGKQMKDVWTGSLTKKVEKWAG 186

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K     HPTQKPE LL RI+++STK GD ILDPF GSGT+G VAK+L R FIGI+ +++Y
Sbjct: 187 K-----HPTQKPEYLLERIILASTKEGDYILDPFVGSGTTGVVAKRLGRRFIGIDAEKEY 241

Query: 258 IDIATKRIAS 267
           + IA KR+ +
Sbjct: 242 LKIARKRLEA 251


>gi|296126987|ref|YP_003634239.1| DNA methylase N-4/N-6 domain protein [Brachyspira murdochii DSM
           12563]
 gi|296018803|gb|ADG72040.1| DNA methylase N-4/N-6 domain protein [Brachyspira murdochii DSM
           12563]
          Length = 259

 Score =  238 bits (608), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 109/254 (42%), Positives = 156/254 (61%), Gaps = 14/254 (5%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           IIKG+ + VL+ +   S+D+IFADPPYNL  NG +      +V      WD+   FE   
Sbjct: 5   IIKGDCLEVLDTIEENSIDMIFADPPYNLSNNG-ITCHAGKMVSVNKGEWDRSLGFEEDT 63

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           AF  AW+  CRRVLK  GT+W+ G+ H+I++ G +L+ L F+ILNDIVW K N  PN   
Sbjct: 64  AFHEAWISKCRRVLKDEGTIWISGTNHSIYKCGYILEKLGFYILNDIVWYKPNAAPNLSC 123

Query: 143 RRFQNAHETLIWASPSPKAKGYT-------FNYDALKAANEDVQMRSDWLIPICSGSERL 195
           + F ++HET++WA  +  AK Y         +++  K  ++  QMRS W I   S SE++
Sbjct: 124 KVFTHSHETILWAKKNKNAKHYYNYDLMKNMDFEDDKLKSKGKQMRSVWSISAPSKSEKI 183

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMK 254
             K     HPTQKP  LL+RI+++STK  D ILDPF GSGT+ A  K +  R++IGIE+ 
Sbjct: 184 HGK-----HPTQKPLKLLTRIILASTKENDTILDPFNGSGTTAAACKIIGNRNYIGIEID 238

Query: 255 QDYIDIATKRIASV 268
           ++YI++  KR+  +
Sbjct: 239 ENYIELTNKRLNDI 252


>gi|322372954|ref|ZP_08047490.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sp. C150]
 gi|321277996|gb|EFX55065.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sp. C150]
          Length = 270

 Score =  238 bits (608), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 108/252 (42%), Positives = 155/252 (61%), Gaps = 8/252 (3%)

Query: 17  FEWKDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           + +KDK  ++  ++   L+K+  +S+D+IFADPPY L  NG        +V      WDK
Sbjct: 5   YYYKDKAILVHADTFEFLKKIKPESMDMIFADPPYFLS-NGGFSNSGGKVVSVNKGDWDK 63

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
             + E    F R W+   ++VLKPNGT+WV GS+HNI+ +G  L+   F ILN+I W+K+
Sbjct: 64  IDTLEEKHDFNRNWIRLAKKVLKPNGTIWVSGSFHNIYSVGMALEQEGFKILNNITWQKT 123

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           NP PN   R F ++ ET++WA  + K   + +NY+ +K  N   QM+  W   +   +E+
Sbjct: 124 NPAPNLSCRYFTHSTETVLWARKNDKKAKHYYNYELMKELNGGKQMKDVWTGALTKKAEK 183

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
              K     HPTQKPE LL RI+++STKP D ILDPF GSGT+G VAK+L R FIGI+ +
Sbjct: 184 WAGK-----HPTQKPEYLLERIILASTKPNDYILDPFVGSGTTGVVAKRLGRYFIGIDSE 238

Query: 255 QDYIDIATKRIA 266
           +DY+ IA  R+ 
Sbjct: 239 KDYLKIAQARLE 250


>gi|290580993|ref|YP_003485385.1| putative adenine-specific DNA methylase [Streptococcus mutans
           NN2025]
 gi|254997892|dbj|BAH88493.1| putative adenine-specific DNA methylase [Streptococcus mutans
           NN2025]
          Length = 257

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 109/254 (42%), Positives = 158/254 (62%), Gaps = 8/254 (3%)

Query: 17  FEWKDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           + +K+K  ++  ++   LEK+ ++S+D+IFADPPY L  NG        ++      WDK
Sbjct: 5   YYYKNKTILVHADTFQFLEKMKSESIDMIFADPPYFLS-NGGFSNSGGQVISVDKGDWDK 63

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            +S E    F R W+   ++VLK NGT+W+ GS HNI+ +G  L+   F ILN+I W+K+
Sbjct: 64  AASLEEKHEFNRRWIRLAKKVLKSNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKT 123

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           NP+PN   R F ++ ET++WA  + K   + +NYD +K  N+  QM+  W   +   SE+
Sbjct: 124 NPVPNLSCRYFTHSTETILWARKNDKKSKHYYNYDLMKKINDGKQMKDVWTGSLTKKSEK 183

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
              K     HPTQKPE LL RI+++STK GD ILDPF GSGT+G VAKKL R FIGI+ +
Sbjct: 184 WAGK-----HPTQKPEYLLERIILASTKKGDYILDPFVGSGTTGVVAKKLGRRFIGIDSE 238

Query: 255 QDYIDIATKRIASV 268
           ++Y+ IA  R+  V
Sbjct: 239 REYLRIARTRLERV 252


>gi|269976527|ref|ZP_06183512.1| DNA methylase [Mobiluncus mulieris 28-1]
 gi|269935328|gb|EEZ91877.1| DNA methylase [Mobiluncus mulieris 28-1]
          Length = 277

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 102/247 (41%), Positives = 150/247 (60%), Gaps = 6/247 (2%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I  G++  +L ++   SVD+IFADPPY L  NG +       V     +WD+    E  
Sbjct: 23  RIFLGDAFEILARIAQSSVDMIFADPPYFLS-NGGISCSGGRQVSVNKGAWDRGMGTEEK 81

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F R W+  C+RVLK +G++WV G++HNI+ +G  L+   F ILN+I W+K NP PN  
Sbjct: 82  HGFNRRWVRQCKRVLKRDGSIWVSGTFHNIYSLGFALEQEGFKILNNITWQKLNPPPNLA 141

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R F ++ ET+IWA  + +   + F+Y  +K  N   QM+  W   +   SE++  K   
Sbjct: 142 CRCFTHSTETVIWARKNERKARHFFDYPLMKTLNGGKQMKDVWAGTLTPKSEKICGK--- 198

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKPE LL RI+++ST+ GD++LDPF GSGT+  VAK+L R  IGI+  ++Y++IA
Sbjct: 199 --HPTQKPEYLLERIILASTREGDLVLDPFVGSGTTAVVAKRLGRYSIGIDSVEEYLEIA 256

Query: 262 TKRIASV 268
            KR+A  
Sbjct: 257 GKRLAQT 263


>gi|115375188|ref|ZP_01462455.1| DNA methylase [Stigmatella aurantiaca DW4/3-1]
 gi|310823140|ref|YP_003955498.1| adenine-specific DNA methyltransferase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115367839|gb|EAU66807.1| DNA methylase [Stigmatella aurantiaca DW4/3-1]
 gi|309396212|gb|ADO73671.1| adenine-specific DNA methyltransferase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 289

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 104/263 (39%), Positives = 138/263 (52%), Gaps = 16/263 (6%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+ +G+S+ +L + P +  DL+FADPPY L  NG               +WD     E  
Sbjct: 27  KLYQGDSVELLNQFPEQQFDLVFADPPYFLS-NGGFTCKSGKRASVAKGAWDVSRGVEED 85

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             FT  WL AC+RVLKP GTLWV G+ H IF +G  +Q L F +LN + W K N  PN  
Sbjct: 86  HRFTTEWLKACQRVLKPTGTLWVSGTQHVIFNVGFAMQKLGFKLLNTVTWYKPNASPNLS 145

Query: 142 GRRFQNAHETLIWASPSPKA-KGYTFNYDALKAANEDVQMRSDWLIPI------------ 188
            R F ++ E LIWASP P     +TFNY  +K  N   QMR  W +P             
Sbjct: 146 CRYFTHSTELLIWASPKPAKTLQHTFNYARMKTENGGKQMRDVWNLPRTGEEELSADGAG 205

Query: 189 --CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
              +     R +     HPTQKP ALL RI+ +ST     +LDPF GSGT+G  A KL R
Sbjct: 206 RMWTQIAPRREEKAFGSHPTQKPVALLERIIEASTPEDATVLDPFNGSGTTGVAALKLGR 265

Query: 247 SFIGIEMKQDYIDIATKRIASVQ 269
            + GI++   Y+ +  KR+ +V+
Sbjct: 266 RYTGIDLDPTYLSLTKKRLDAVK 288


>gi|322392398|ref|ZP_08065859.1| modification methylase BabI [Streptococcus peroris ATCC 700780]
 gi|321144933|gb|EFX40333.1| modification methylase BabI [Streptococcus peroris ATCC 700780]
          Length = 265

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 111/252 (44%), Positives = 157/252 (62%), Gaps = 8/252 (3%)

Query: 20  KDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           KDK  ++  ++  +L K+  +S+D+IFADPPY L  NG +      +V      WDK SS
Sbjct: 20  KDKMILVHSDTFKLLSKMKPESMDMIFADPPYFLS-NGGISNSGGQVVSVDKGDWDKISS 78

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           FE    F R W+   + VLKPNGT+W+ GS HNI+ +G  L+   F ILN+I W+K+NP 
Sbjct: 79  FEEKHEFNRKWIRLAKEVLKPNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKTNPA 138

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PN   R F ++ ET++WA  + K   + +NYD +K  N+  QM+  W   +   +E+   
Sbjct: 139 PNLSCRYFTHSTETILWARKNDKKARHYYNYDLMKELNDGKQMKDVWTGALTKKAEKWAG 198

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K     HPTQKPE LL RI+++STK GD ILDPF GSGT+G VAK+L R FIGI+ +++Y
Sbjct: 199 K-----HPTQKPEYLLERIILASTKEGDYILDPFVGSGTTGVVAKRLGRRFIGIDAEKEY 253

Query: 258 IDIATKRIASVQ 269
           + IA KR+   +
Sbjct: 254 LKIAKKRLEYTE 265


>gi|127389|sp|P09358|MTD22_STRPN RecName: Full=Modification methylase DpnIIB; Short=M.DpnIIB;
           AltName: Full=Adenine-specific methyltransferase DpnIIB;
           AltName: Full=M.DpnII 2
 gi|6978344|gb|AAA88581.2| DNA adenine methyltransferase [Streptococcus pneumoniae]
          Length = 268

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 110/250 (44%), Positives = 155/250 (62%), Gaps = 8/250 (3%)

Query: 20  KDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           K+K  ++  ++   L K+  +S+D+IFADPPY L  NG +      +V      WDK SS
Sbjct: 20  KNKMILVHSDTFKFLSKMKPESMDMIFADPPYFLS-NGGISNSGGQVVSVDKGDWDKISS 78

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           FE    F R W+   + VLKPNGT+W+ GS HNI+ +G  L+   F ILN+I W+K+NP 
Sbjct: 79  FEEKHEFNRKWIRLAKEVLKPNGTVWISGSLHNIYSVGMALEQEGFKILNNITWQKTNPA 138

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PN   R F ++ ET++WA  + K   + +NYD +K  N+  QM+  W   +    E+   
Sbjct: 139 PNLSCRYFTHSTETILWARKNDKKARHYYNYDLMKELNDGKQMKDVWTGSLTKKVEKWAG 198

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K     HPTQKPE LL RI+++STK GD ILDPF GSGT+G VAK+L R FIGI+ +++Y
Sbjct: 199 K-----HPTQKPEYLLERIILASTKEGDYILDPFVGSGTTGVVAKRLGRRFIGIDAEKEY 253

Query: 258 IDIATKRIAS 267
           + IA KR+ +
Sbjct: 254 LKIARKRLEA 263


>gi|332199870|gb|EGJ13945.1| DNA methylase family protein [Streptococcus pneumoniae GA41317]
          Length = 256

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 110/250 (44%), Positives = 156/250 (62%), Gaps = 8/250 (3%)

Query: 20  KDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           K+K  ++  ++   L K+  +S+D+IFADPPY L  NG +      +V      WDK SS
Sbjct: 8   KNKMILVHSDTFKFLSKMKPESMDMIFADPPYFLS-NGGISNSGGQVVSVDKGDWDKISS 66

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           FE    F R W+   + VLKPNGT+W+ GS HNI+ +G +L+   F ILN+I W+K+NP 
Sbjct: 67  FEEKHEFNRKWIRLAKEVLKPNGTVWISGSLHNIYSVGMVLEQEGFKILNNITWQKTNPA 126

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PN   R F ++ ET++WA  + K   + +NYD +K  N+  QM+  W   +    E+   
Sbjct: 127 PNLSCRYFTHSTETILWARKNDKKARHYYNYDLMKELNDGKQMKDVWTGSLTKKVEKWAG 186

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K     HPTQKPE LL RI+++STK GD ILDPF GSGT+G VAK+L R FIGI+ +++Y
Sbjct: 187 K-----HPTQKPEYLLERIILASTKEGDYILDPFVGSGTTGVVAKRLGRRFIGIDAEKEY 241

Query: 258 IDIATKRIAS 267
           + IA KR+ +
Sbjct: 242 LKIARKRLEA 251


>gi|146297740|ref|YP_001181511.1| DNA methylase N-4/N-6 domain-containing protein
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145411316|gb|ABP68320.1| DNA methylase N-4/N-6 domain protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 247

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 105/257 (40%), Positives = 143/257 (55%), Gaps = 15/257 (5%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +   + ++VL+K+   S+DLIFADPPYNL     L       V      WDK    +   
Sbjct: 6   LFNDDCLNVLKKIEDNSIDLIFADPPYNLSSENALTTRAGKPVKCYKGEWDKI---DDIF 62

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   W+  C RVLK  GT+W+ G+ HN   IGT+L+ L  WI+NDI+W K N  P    
Sbjct: 63  EFNLRWIEQCVRVLKETGTIWISGTLHNHPIIGTILKQLGLWIINDIIWFKPNATPLLSR 122

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
            RF  + E +  AS +   K Y F+Y+  +  N   QMR+ W IP          +  + 
Sbjct: 123 NRFVPSTELIWVASKN---KRYYFDYEMARKLNGGKQMRNLWEIPA---------QRHKT 170

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPT+KPEALL RI++  +K GD++LDPF GSGT+G VAK L+R+FIGIE+   Y +IA 
Sbjct: 171 PHPTEKPEALLERIILIGSKEGDVVLDPFMGSGTTGVVAKLLKRNFIGIEIDPVYFEIAK 230

Query: 263 KRIASVQPLGNIELTVL 279
           KRI   +P+    L  L
Sbjct: 231 KRIEEEKPIQQTFLNFL 247


>gi|322375761|ref|ZP_08050273.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sp. C300]
 gi|321279469|gb|EFX56510.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sp. C300]
          Length = 270

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 111/249 (44%), Positives = 156/249 (62%), Gaps = 8/249 (3%)

Query: 20  KDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           KDK  ++  ++  +L K+  +S+D+IFADPPY L  NG +      +V      WDK SS
Sbjct: 20  KDKMILVHADTFKLLSKMKPESMDMIFADPPYFLS-NGGISNSGGQVVSVDKGDWDKISS 78

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           FE    F R W+   + VLKPNGT+W+ GS HNI+ +G  L+   F ILN+I W+K+NP 
Sbjct: 79  FEEKHEFNRKWIRLAKEVLKPNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKTNPA 138

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PN   R F ++ ET++WA  + K   + +NYD +K  N+  QM+  W   +   +E+   
Sbjct: 139 PNLSCRYFTHSTETILWARKNDKKARHYYNYDLMKELNDGKQMKDVWTGALTKKAEKWAG 198

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K     HPTQKPE LL RI+++STK GD ILDPF GSGT+G VAK+L R FIGI+ +++Y
Sbjct: 199 K-----HPTQKPEYLLERIILASTKEGDYILDPFVGSGTTGVVAKRLGRRFIGIDAEKEY 253

Query: 258 IDIATKRIA 266
           + IA +RI 
Sbjct: 254 LKIAKQRIE 262


>gi|24378989|ref|NP_720944.1| putative adenine-specific DNA methylase [Streptococcus mutans
           UA159]
 gi|24376880|gb|AAN58250.1|AE014896_6 putative adenine-specific DNA methylase [Streptococcus mutans
           UA159]
          Length = 269

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 110/254 (43%), Positives = 158/254 (62%), Gaps = 8/254 (3%)

Query: 17  FEWKDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           + +K+K  ++  ++   LEK+ ++S+D+IFADPPY L  NG        +V      WDK
Sbjct: 17  YYYKNKTILVHADTFQFLEKMKSESIDMIFADPPYFLS-NGGFSNSGGQVVSVDKGDWDK 75

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            +S E    F R W+   ++VLK NGT+W+ GS HNI+ +G  L+   F ILN+I W+K+
Sbjct: 76  AASLEEKHEFNRRWIRLAKKVLKSNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKT 135

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           NP+PN   R F ++ ET++WA  + K   + +NYD +K  N+  QM+  W   +   SE+
Sbjct: 136 NPVPNLSCRYFTHSTETILWARKNDKKSKHYYNYDLMKKINDGKQMKDVWTGSLTKKSEK 195

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
              K     HPTQKPE LL RI+++STK GD ILDPF GSGT+G VAKKL R FIGI+ +
Sbjct: 196 WAGK-----HPTQKPEYLLERIILASTKKGDYILDPFVGSGTTGVVAKKLGRRFIGIDSE 250

Query: 255 QDYIDIATKRIASV 268
           ++Y+ IA  R+  V
Sbjct: 251 REYLRIARTRLERV 264


>gi|14325665|dbj|BAB60568.1| DNA adenine modification methylase [Thermoplasma volcanium GSS1]
          Length = 265

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 107/252 (42%), Positives = 157/252 (62%), Gaps = 2/252 (0%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR--PDHSLVDAVTDSWDK 74
            E KD ++ G+S+ ++ ++     DLIF DPPY LQ+  +  +   + S+   V + WD 
Sbjct: 4   EEVKDSVLLGDSLEIMRRIDDCIYDLIFLDPPYYLQMTPKRLKRWNNRSVPQTVREYWDA 63

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
           F SFEAYD+F  + L   +R++    T+W IG+YHNIFRIG ++Q++ FWILND+VW K+
Sbjct: 64  FPSFEAYDSFISSVLKEAKRLMSDTSTIWAIGTYHNIFRIGKIMQDMGFWILNDVVWIKT 123

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           NPMPN+ G RF N+ ETLIWA+   + K YT+N +  K         + W++    G+ER
Sbjct: 124 NPMPNWLGVRFTNSTETLIWATKGKEQKNYTYNRNLAKEFGLGKTANNVWVMKTSRGNER 183

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           +R+++ + +HP QKP  L+ RI++SSTK GD+ILDPF G GT+G  A  L R+F  IE  
Sbjct: 184 VRDENRKSVHPAQKPLELMKRIILSSTKEGDLILDPFAGVGTTGVAASMLGRNFTLIEKD 243

Query: 255 QDYIDIATKRIA 266
             Y      R +
Sbjct: 244 PVYYRAMLSRFS 255


>gi|125718516|ref|YP_001035649.1| modification methylase DpnIIB [Streptococcus sanguinis SK36]
 gi|125498433|gb|ABN45099.1| Modification methylase DpnIIB, putative [Streptococcus sanguinis
           SK36]
          Length = 267

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 107/245 (43%), Positives = 150/245 (61%), Gaps = 6/245 (2%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++  ++   L ++  +S+D+IFADPPY L  NG       ++V      WDK S  E   
Sbjct: 25  LVHADTFDFLSQMKPESMDMIFADPPYFLS-NGGFSNSGGNIVSVDKGDWDKVSGLEEKH 83

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R WL   R +LKPNGT+W+ GS HNI+ +G  L+   F ILN+I W+KSNP PN   
Sbjct: 84  DFNRRWLRLVRPILKPNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKSNPAPNLSC 143

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ ET++WA    K   + +NYD +K  N   QM+  W+ P+   +E+   K    
Sbjct: 144 RYFTHSTETILWARKDDKKAKHYYNYDLMKDINGGKQMKDVWIGPLTKKAEKWAGK---- 199

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE LL RI+++STK  D ILDPF GSGT+G VAK+L R FIGI+ ++DY++IA 
Sbjct: 200 -HPTQKPEYLLERIILASTKENDYILDPFVGSGTTGVVAKRLGRKFIGIDAEKDYLEIAK 258

Query: 263 KRIAS 267
           +R+  
Sbjct: 259 RRLEE 263


>gi|329119746|ref|ZP_08248425.1| modification methylase DpnIIB [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464141|gb|EGF10447.1| modification methylase DpnIIB [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 269

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 98/249 (39%), Positives = 147/249 (59%), Gaps = 11/249 (4%)

Query: 23  IIKGNSISVLEKL----PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +   ++++V+ K+    P    D+IFADPPY L  NG     +  +V      WDK    
Sbjct: 27  LYHEDALTVMRKILDKHPEGCFDMIFADPPYFLSNNG-FTCQNGQMVSVNKGGWDKSQGM 85

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            A   F   WL  C  +LKPNGT+WV G+ HNI+ +G ++Q++ + ILN+I W K NP P
Sbjct: 86  AADMEFYEEWLRLCYALLKPNGTIWVCGTQHNIYLVGYLMQSVGYHILNNITWEKPNPPP 145

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           N   R F ++ ETL+WA  +  AK +TF+Y  +KA N   QM+S W +   + +E+   K
Sbjct: 146 NLSCRFFTHSTETLLWAKKNKTAK-HTFHYKVMKAQNGGKQMKSVWQLTPPNKTEKTHGK 204

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQKP ALL R +++++  GD++ DPF GSGT+GA A K  R F G E ++++ 
Sbjct: 205 -----HPTQKPLALLERCILAASNIGDLVFDPFAGSGTTGAAALKHGRRFCGCEKEEEFF 259

Query: 259 DIATKRIAS 267
           ++A KR+ +
Sbjct: 260 ELAKKRLKN 268


>gi|332362311|gb|EGJ40111.1| modification methylase BabI [Streptococcus sanguinis SK1056]
          Length = 265

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 107/245 (43%), Positives = 150/245 (61%), Gaps = 6/245 (2%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++  ++   L ++  +S+D+IFADPPY L  NG       ++V      WDK S  E   
Sbjct: 25  LVHADTFDFLSQMKPESMDMIFADPPYFLS-NGGFSNSGGNIVSVDKGDWDKVSGLEEKH 83

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R WL   R +LKPNGT+W+ GS HNI+ +G  L+   F ILN+I W+KSNP PN   
Sbjct: 84  DFNRQWLRLVRPILKPNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKSNPAPNLSC 143

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ ET++WA    K   + +NYD +K  N   QM+  W+ P+   +E+   K    
Sbjct: 144 RYFTHSTETILWARKDDKKAKHYYNYDLMKDINGGKQMKDVWIGPLTKKAEKWAGK---- 199

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE LL RI+++STK  D ILDPF GSGT+G VAK+L R FIGI+ ++DY++IA 
Sbjct: 200 -HPTQKPEYLLERIILASTKENDYILDPFVGSGTTGVVAKRLGRKFIGIDAEKDYLEIAK 258

Query: 263 KRIAS 267
           +R+  
Sbjct: 259 RRLEE 263


>gi|325696288|gb|EGD38179.1| modification methylase BabI [Streptococcus sanguinis SK160]
          Length = 265

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 108/245 (44%), Positives = 150/245 (61%), Gaps = 6/245 (2%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++  ++   L K+  +S+D+IFADPPY L  NG       ++V      WDK S  E   
Sbjct: 25  LVHADTFDFLSKMKPESMDMIFADPPYFLS-NGGFSNSGGNIVSVDKGDWDKVSGLEEKH 83

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R WL   R +LKPNGT+W+ GS HNI+ +G  L+   F ILN+I W+KSNP PN   
Sbjct: 84  DFNRRWLRLVRPILKPNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKSNPAPNLSC 143

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ ET++WA    K   + +NYD +K  N   QM+  W+ P+   +E+   K    
Sbjct: 144 RYFTHSTETILWARKDDKKAKHYYNYDLMKDINGGKQMKDVWIGPLTKKAEKWAGK---- 199

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE LL RI+++STK  D ILDPF GSGT+G VAK+L R FIGI+ ++DY++IA 
Sbjct: 200 -HPTQKPEYLLERIILASTKENDYILDPFVGSGTTGVVAKRLGRKFIGIDAEKDYLEIAK 258

Query: 263 KRIAS 267
           +R+  
Sbjct: 259 RRLEE 263


>gi|324991367|gb|EGC23300.1| modification methylase BabI [Streptococcus sanguinis SK353]
 gi|325687054|gb|EGD29077.1| modification methylase BabI [Streptococcus sanguinis SK72]
          Length = 267

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 107/245 (43%), Positives = 150/245 (61%), Gaps = 6/245 (2%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++  ++   L ++  +S+D+IFADPPY L  NG       ++V      WDK S  E   
Sbjct: 25  LVHADTFDFLSQMKPESMDMIFADPPYFLS-NGGFSNSGGNIVSVDKGDWDKVSGLEEKH 83

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R WL   R +LKPNGT+W+ GS HNI+ +G  L+   F ILN+I W+KSNP PN   
Sbjct: 84  DFNRRWLRLVRPILKPNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKSNPAPNLSC 143

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ ET++WA    K   + +NYD +K  N   QM+  W+ P+   +E+   K    
Sbjct: 144 RYFTHSTETILWARKDDKKAKHYYNYDLMKDINGGKQMKDVWIGPLTKKAEKWAGK---- 199

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE LL RI+++STK  D ILDPF GSGT+G VAK+L R FIGI+ ++DY++IA 
Sbjct: 200 -HPTQKPEYLLERIILASTKENDYILDPFVGSGTTGVVAKRLGRKFIGIDAEKDYLEIAK 258

Query: 263 KRIAS 267
           +R+  
Sbjct: 259 RRLEE 263


>gi|315655312|ref|ZP_07908212.1| modification methylase BabI [Mobiluncus curtisii ATCC 51333]
 gi|315490252|gb|EFU79877.1| modification methylase BabI [Mobiluncus curtisii ATCC 51333]
          Length = 266

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 103/246 (41%), Positives = 145/246 (58%), Gaps = 6/246 (2%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K K+I  +    LE L  +S+D+IFADPPY L  +G +       V      WDK     
Sbjct: 15  KAKLILADVFDALENLEEQSIDMIFADPPYFLSNDG-ISCSGGKQVSVNKGDWDKGLPLS 73

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
               F R W+  C+RVLK +G++W+ G++HNI+ IG+ L+   F ILN+I W+K NP PN
Sbjct: 74  EKHEFNRHWIRECKRVLKRDGSIWISGTFHNIYSIGSALEQERFKILNNITWQKLNPPPN 133

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
              R F ++ ET+IWA    K   + FNY  +K  N+  QM+  W   +   +E+   K 
Sbjct: 134 LGCRCFTHSTETVIWARKDEKKAKHKFNYGLMKELNDGKQMKDVWQGTLTPKNEKAFGK- 192

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
               HPTQKPE LL RI+++ST  GD++LDPF GSGT+  VA +L RS IGI+   +Y++
Sbjct: 193 ----HPTQKPEYLLERIILASTNEGDLVLDPFVGSGTTVVVANRLGRSGIGIDNNPEYLE 248

Query: 260 IATKRI 265
           IA KR+
Sbjct: 249 IAKKRL 254


>gi|327470495|gb|EGF15951.1| modification methylase BabI [Streptococcus sanguinis SK330]
          Length = 265

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 107/245 (43%), Positives = 150/245 (61%), Gaps = 6/245 (2%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++  ++   L ++  +S+D+IFADPPY L  NG       ++V      WDK S  E   
Sbjct: 25  LVHADTFDFLSQMKPESMDMIFADPPYFLS-NGGFSNSGGNIVSVDKGDWDKVSGLEEKH 83

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R WL   R +LKPNGT+W+ GS HNI+ +G  L+   F ILN+I W+KSNP PN   
Sbjct: 84  DFNRRWLRLVRPILKPNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKSNPAPNLSC 143

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ ET++WA    K   + +NYD +K  N   QM+  W+ P+   +E+   K    
Sbjct: 144 RYFTHSTETILWARKDDKKAKHYYNYDLMKDINGGKQMKDVWIGPLTKKAEKWAGK---- 199

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKPE LL RI+++STK  D ILDPF GSGT+G VAK+L R FIGI+ ++DY++IA 
Sbjct: 200 -HPTQKPEYLLERIILASTKENDYILDPFVGSGTTGVVAKRLGRKFIGIDAEKDYLEIAK 258

Query: 263 KRIAS 267
           +R+  
Sbjct: 259 RRLEE 263


>gi|166032271|ref|ZP_02235100.1| hypothetical protein DORFOR_01974 [Dorea formicigenerans ATCC
           27755]
 gi|166027994|gb|EDR46751.1| hypothetical protein DORFOR_01974 [Dorea formicigenerans ATCC
           27755]
          Length = 270

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 103/251 (41%), Positives = 154/251 (61%), Gaps = 10/251 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS----S 77
           ++I G+S  +L K+  +SVD+IFADPPY L  +G +      +V     SWDK S    S
Sbjct: 19  QLIVGDSFKILTKMEPESVDMIFADPPYFLSNDG-ITCQGGKMVSVNKGSWDKLSESGTS 77

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E    F R W+  C++VLKPNGT+W+ G+ HNI+ IG  L+   F I+N+I W+K+NP 
Sbjct: 78  VEEKHKFNRKWIKLCKKVLKPNGTIWISGTLHNIYSIGMALEQEGFKIINNITWQKTNPP 137

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PN   R F ++ ET++WA  + K   + F+Y  +K  N   QM+  W   +   SE+   
Sbjct: 138 PNLACRCFTHSTETILWAKKNDKKSRHFFDYQKMKEMNGGKQMKDVWTGALTKPSEKTEG 197

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K     HPTQKP+ LL +I+++ST+ G +ILDPF GSGT+G  A +  R FIGI++ ++Y
Sbjct: 198 K-----HPTQKPKYLLEKIVLASTEEGQVILDPFCGSGTTGVEAVRFGRKFIGIDVSEEY 252

Query: 258 IDIATKRIASV 268
           ++I+ +R+  V
Sbjct: 253 LEISKRRLEKV 263


>gi|298346767|ref|YP_003719454.1| adenine-specific DNA-methyltransferase [Mobiluncus curtisii ATCC
           43063]
 gi|298236828|gb|ADI67960.1| site-specific DNA-methyltransferase (adenine-specific) [Mobiluncus
           curtisii ATCC 43063]
          Length = 274

 Score =  236 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 100/252 (39%), Positives = 143/252 (56%), Gaps = 6/252 (2%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+I  +    L+ +  +SVD+IFADPPY L  +G +       V      WDK       
Sbjct: 17  KLILADVFDALKNIEEQSVDMIFADPPYFLSNDG-ISCSGGKQVSVNKGDWDKGLPLSEK 75

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F R W+  C+RVLK +G++W+ G++HNI+ IG  L+   F ILN+I W+K NP PN  
Sbjct: 76  HEFNRHWIRECKRVLKLDGSIWISGTFHNIYSIGFALEQERFKILNNITWQKLNPPPNLG 135

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R F ++ ET+IWA        + FNY  +K  N+  QM+  W   +   +E+   K   
Sbjct: 136 CRCFTHSTETVIWARKDENKAKHKFNYGLMKELNDGKQMKDVWQGTLTPKNEKAFGK--- 192

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKPE LL RI+++ST  GD++LDPF GSGT+  VA +L RS IGI+   +Y++IA
Sbjct: 193 --HPTQKPEYLLERIILASTNEGDLVLDPFVGSGTTVVVANRLGRSGIGIDNNTEYLEIA 250

Query: 262 TKRIASVQPLGN 273
            KR+  +     
Sbjct: 251 KKRLLGLTSTPE 262


>gi|238917688|ref|YP_002931205.1| site-specific DNA-methyltransferase (adenine-specific) [Eubacterium
           eligens ATCC 27750]
 gi|238873048|gb|ACR72758.1| site-specific DNA-methyltransferase (adenine-specific) [Eubacterium
           eligens ATCC 27750]
          Length = 267

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 103/251 (41%), Positives = 153/251 (60%), Gaps = 10/251 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS----S 77
           +++ G+S  +L K+  +SVD+IFADPPY L  +G +      +V     SWDK S     
Sbjct: 19  QLVLGDSFKILTKMKPESVDMIFADPPYFLSNDG-ITCQGGKMVSVNKGSWDKLSESGTG 77

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E    F R W+  CR+VLKPNGT+W+ G+ HNI+ IG  L+   F I+N+I W+K+NP 
Sbjct: 78  VEEKHKFNRKWIKLCRKVLKPNGTIWISGTLHNIYSIGMALEQEGFKIINNITWQKTNPP 137

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PN   R F ++ ET++WA  + K   + F+Y  +K  N   QM+  W   +   SE+   
Sbjct: 138 PNLACRCFTHSTETILWAQKNDKKSRHFFDYQKMKEMNGGKQMKDVWTGALTKPSEKTEG 197

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K     HPTQKPE LL +I+++ST+ G +ILDPF GSGT+G  A +  R FIGI++ ++Y
Sbjct: 198 K-----HPTQKPEYLLEKIVLASTEEGQVILDPFCGSGTTGVEAVRFGRKFIGIDVSEEY 252

Query: 258 IDIATKRIASV 268
           ++I+ +R+  V
Sbjct: 253 LEISKRRLEKV 263


>gi|149917692|ref|ZP_01906188.1| DNA methylase N-4/N-6 [Plesiocystis pacifica SIR-1]
 gi|149821474|gb|EDM80874.1| DNA methylase N-4/N-6 [Plesiocystis pacifica SIR-1]
          Length = 348

 Score =  235 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 102/249 (40%), Positives = 146/249 (58%), Gaps = 7/249 (2%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            + + ++I+G+S+ +LE+LP  SVD+IFADPPY L  NG         V      WD   
Sbjct: 83  PDSRARLIQGDSLDILEQLPEGSVDVIFADPPYFLS-NGGTTCQGGKRVSVNKGKWDASL 141

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             +   AF + WL AC+RVL  NGT+WV G+ H IF +G  +Q L F +LNDIVW K NP
Sbjct: 142 GAQDNHAFNKRWLSACQRVLADNGTIWVSGTAHVIFSVGYAMQELGFKMLNDIVWEKPNP 201

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
            PN   R F ++ E ++WA+ + K+K Y ++Y  +K  N   QM++ W       SE+  
Sbjct: 202 PPNLSCRYFTHSTELVLWAAKTRKSKHY-YDYQEMKLRNGGKQMKNVWRFTAPGKSEKTH 260

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
            K     HPTQKP ALL R+L++S  P   +LDPF GSGT+G  A KL   + G+E + +
Sbjct: 261 GK-----HPTQKPLALLDRLLMASCHPDARVLDPFNGSGTTGVAAAKLGLQYTGLEREPE 315

Query: 257 YIDIATKRI 265
           Y+ ++  R+
Sbjct: 316 YLALSKARL 324


>gi|212639032|ref|YP_002315552.1| DNA modification methylase [Anoxybacillus flavithermus WK1]
 gi|212560512|gb|ACJ33567.1| DNA modification methylase [Anoxybacillus flavithermus WK1]
          Length = 263

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 107/246 (43%), Positives = 146/246 (59%), Gaps = 7/246 (2%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +I+ + +  L+ +   S+ +IFADPPY L  NG +      +V      WDK    E  D
Sbjct: 21  LIQDDCLRALQYIQPSSIHMIFADPPYFLS-NGGISCKSGKIVRVDKGEWDKERDREKID 79

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   W+ AC+RVLK +GT+W+ G++HNI  +G  L  L F ILN IVW+K++P PN   
Sbjct: 80  EFNYRWIQACKRVLKEDGTIWITGTFHNIHSVGQALHQLGFKILNSIVWQKTDPPPNMSK 139

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++HE +IWA  SPK++ Y FNY+A+   N   QM   W IP     E+        
Sbjct: 140 RMFTHSHEYIIWAKKSPKSRHY-FNYEAMVKENNGKQMTDVWTIPHVPPHEKTFGN---- 194

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKP  LL+RI+++STK  DIILDPF GSGT+G  A  L R FIG+E +  +I +  
Sbjct: 195 -HPTQKPLQLLNRIIIASTKQNDIILDPFCGSGTTGVSALCLNRKFIGMERELSFIQLTK 253

Query: 263 KRIASV 268
           +RI SV
Sbjct: 254 RRIQSV 259


>gi|223932377|ref|ZP_03624380.1| DNA methylase N-4/N-6 domain protein [Streptococcus suis 89/1591]
 gi|330831883|ref|YP_004400708.1| DNA adenine methylase M.SsuMB [Streptococcus suis ST3]
 gi|223899058|gb|EEF65416.1| DNA methylase N-4/N-6 domain protein [Streptococcus suis 89/1591]
 gi|329306106|gb|AEB80522.1| DNA adenine methylase M.SsuMB [Streptococcus suis ST3]
          Length = 259

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 109/263 (41%), Positives = 156/263 (59%), Gaps = 8/263 (3%)

Query: 14  NSIFEWKDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
           N  +  K+K  ++  ++   L K+  +S+D+IFADPPY L  NG +      +V      
Sbjct: 2   NKPYYHKNKAILVHADTFEFLNKMKPESMDMIFADPPYFLS-NGGISNSGGQVVSVDKGD 60

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           WDK  S E    F R W+   + VLKPNGT+W+ GS+HNI+ +G  L+   F ILN+I W
Sbjct: 61  WDKVDSLEEKHEFNRKWIRLAKNVLKPNGTIWISGSFHNIYSVGMALEQEGFKILNNITW 120

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
           +K+NP PN   R F ++ ET++WA    K   + +NY+ +K  N+  QM+  W+  +   
Sbjct: 121 QKTNPAPNLSCRYFTHSTETILWARKDDKKARHYYNYELMKELNDGKQMKDVWVGGLTKK 180

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           SE+   K     HPTQKPE LL RI+++ST+ GD ILDPF GSGT+G VAK+L R FIGI
Sbjct: 181 SEKWAGK-----HPTQKPEYLLERIILASTQEGDYILDPFVGSGTTGVVAKRLGRKFIGI 235

Query: 252 EMKQDYIDIATKRIASVQPLGNI 274
           + ++DY+ IA  R+       N 
Sbjct: 236 DAERDYLKIARTRLDKEDDKKNF 258


>gi|325294305|ref|YP_004280819.1| DNA methylase N-4/N-6 domain protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064753|gb|ADY72760.1| DNA methylase N-4/N-6 domain protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 291

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 112/283 (39%), Positives = 155/283 (54%), Gaps = 16/283 (5%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++   ++++VL+K+P +SVD++FADPPYNL  +G         V      WD+   FE  
Sbjct: 12  RLYLDDALNVLDKIPDESVDMVFADPPYNLSNDG-FTCHAGKRVSVNKGEWDRSQGFEKD 70

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F   W+  C+R+LKPNGT+W+ G+YH+I+  G  LQ   + I+N+I W K N  PN  
Sbjct: 71  FNFHYQWIEKCKRILKPNGTIWISGTYHSIYLCGFSLQKQGWHIINEICWYKPNASPNLS 130

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYD--------ALKAANEDVQMRSDWLIPICSGSE 193
            R F  +HETL+WA    +AK +TFNYD               + QMRS W IP     E
Sbjct: 131 CRMFTASHETLLWAKKKKEAK-HTFNYDLAKNGSWEEDLLKKPNKQMRSVWAIPTPKKWE 189

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           +   K     HPTQKPE LL RI++ +TKPGDI+LDPF GSGT+G VA +  R F+GI+ 
Sbjct: 190 KRYGK-----HPTQKPELLLKRIILLTTKPGDIVLDPFCGSGTTGVVAIRYGRRFVGIDF 244

Query: 254 KQDYI-DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            ++Y+ D+A  RI        I       +  E     N   E
Sbjct: 245 NEEYLKDLAIPRIEDELKAKQINRERFLKEEKEIEYDANNYFE 287


>gi|239616524|ref|YP_002939846.1| DNA methylase N-4/N-6 domain protein [Kosmotoga olearia TBF 19.5.1]
 gi|239505355|gb|ACR78842.1| DNA methylase N-4/N-6 domain protein [Kosmotoga olearia TBF 19.5.1]
          Length = 250

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 104/247 (42%), Positives = 134/247 (54%), Gaps = 15/247 (6%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+I G+ I  L+KL A+SVDLIFADPPYNL     L       V      WDK  +    
Sbjct: 5   KLILGDCIEELKKLEAESVDLIFADPPYNLSGENHLTVHAGKPVKLDKGEWDKIDNI--- 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F   W+  C RVLKP+GT+W+ G+ HN   IG  L+ L  WI+ND+VW K N  P   
Sbjct: 62  HEFNLNWIKECIRVLKPHGTIWISGTLHNHPSIGMALKQLGLWIINDVVWYKPNATPLLS 121

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
             RF  + E +  A     +K Y FNY+  K  N+  QMR+ W I           K   
Sbjct: 122 KNRFVPSTEIIWVAGK---SKKYYFNYELAKEMNKGKQMRNLWTIKA---------KRHI 169

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HP +KPE LL RI++  +   D ILDPF GSGT+G VAK+  R+FIGIE+ Q+Y + A
Sbjct: 170 TPHPAEKPEELLERIILIGSNEADTILDPFMGSGTTGVVAKRYNRNFIGIEINQEYFEWA 229

Query: 262 TKRIASV 268
            +RI   
Sbjct: 230 KERIEKT 236


>gi|12082202|dbj|BAB20829.1| DNA adenine methylase M.SsuMB [Streptococcus suis]
 gi|15281320|dbj|BAB63414.1| DNA adenine methylase M.Ssu11318IB [Streptococcus suis]
 gi|15281326|dbj|BAB63419.1| DNA adenine methylase M.Ssu4961IB [Streptococcus suis]
 gi|15281332|dbj|BAB63424.1| DNA adenine methylase M.Ssu8074IB [Streptococcus suis]
 gi|15281338|dbj|BAB63429.1| DNA adenine methylase M.Ssu2479IB [Streptococcus suis]
          Length = 271

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 109/263 (41%), Positives = 156/263 (59%), Gaps = 8/263 (3%)

Query: 14  NSIFEWKDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
           N  +  K+K  ++  ++   L K+  +S+D+IFADPPY L  NG +      +V      
Sbjct: 14  NKPYYHKNKAILVHADTFEFLNKMKPESMDMIFADPPYFLS-NGGISNSGGQVVSVDKGD 72

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           WDK  S E    F R W+   + VLKPNGT+W+ GS+HNI+ +G  L+   F ILN+I W
Sbjct: 73  WDKVDSLEEKHEFNRKWIRLAKNVLKPNGTIWISGSFHNIYSVGMALEQEGFKILNNITW 132

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
           +K+NP PN   R F ++ ET++WA    K   + +NY+ +K  N+  QM+  W+  +   
Sbjct: 133 QKTNPAPNLSCRYFTHSTETILWARKDDKKARHYYNYELMKELNDGKQMKDVWVGGLTKK 192

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           SE+   K     HPTQKPE LL RI+++ST+ GD ILDPF GSGT+G VAK+L R FIGI
Sbjct: 193 SEKWAGK-----HPTQKPEYLLERIILASTQEGDYILDPFVGSGTTGVVAKRLGRKFIGI 247

Query: 252 EMKQDYIDIATKRIASVQPLGNI 274
           + ++DY+ IA  R+       N 
Sbjct: 248 DAERDYLKIARTRLDKEDDKKNF 270


>gi|48290858|dbj|BAB63435.2| DNA adenine methylase M.Ssu4109IB [Streptococcus suis]
          Length = 271

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 108/256 (42%), Positives = 157/256 (61%), Gaps = 8/256 (3%)

Query: 14  NSIFEWKDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
           N  +  K+K  ++  ++   L+K+  +S+D+IFADPPY L  NG +      +V      
Sbjct: 14  NKPYYHKNKAILVHADTFEFLDKMKPESMDMIFADPPYFLS-NGGISNSGGQVVSVDKGD 72

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           WDK +S E    F R W+   + VLKPNGT+W+ GS+HNI+ +G  L+   F ILN+I W
Sbjct: 73  WDKVNSLEEKHEFNRKWIRLAKNVLKPNGTIWISGSFHNIYSVGMALEQEGFKILNNITW 132

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
           +K+NP PN   R F ++ ET++WA    K   + +NY+ +K  N+  QM+  W+  +   
Sbjct: 133 QKTNPAPNLSCRYFTHSTETILWARKDDKKARHYYNYELMKELNDGKQMKDVWVGGLTKK 192

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           SE+   K     HPTQKPE LL RI+++ST+ GD ILDPF GSGT+G VAK+L R FIGI
Sbjct: 193 SEKWAGK-----HPTQKPEYLLERIILASTREGDYILDPFVGSGTTGVVAKRLGRKFIGI 247

Query: 252 EMKQDYIDIATKRIAS 267
           + ++DY+ IA  R+  
Sbjct: 248 DAERDYLKIARTRLDK 263


>gi|325204847|gb|ADZ00301.1| Modification methylase LlaDCHIB [Neisseria meningitidis M01-240355]
          Length = 269

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 101/249 (40%), Positives = 148/249 (59%), Gaps = 11/249 (4%)

Query: 23  IIKGNSISVLEKL----PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +   NS++V+ K+    P    D+IFADPPY L  +G     +  +V     +WDK    
Sbjct: 28  LYNENSLNVMRKILEKYPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGM 86

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            A   F   WL  C  +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP P
Sbjct: 87  AADLEFYEEWLRLCYALLKPNGTIWVCGTFHNIYLIGYLMQTIGYHILNNITWEKPNPPP 146

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           N   R F ++ ET++WA  + KAK +TF+Y+ +KA N+  QM+  W  P  + +E+   K
Sbjct: 147 NLSCRFFTHSTETILWAKKNKKAK-HTFHYEMMKAQNDGKQMKCVWTFPPPNKAEKTFGK 205

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQKP  LL R ++S++  GD+I DPF GSGT+G  A K  R F G E+++D+ 
Sbjct: 206 -----HPTQKPLPLLERCILSASNIGDLIFDPFMGSGTTGVAALKHGRKFCGCELEEDFF 260

Query: 259 DIATKRIAS 267
           ++A KR+  
Sbjct: 261 ELAKKRLEK 269


>gi|291523889|emb|CBK89476.1| DNA modification methylase [Eubacterium rectale DSM 17629]
          Length = 270

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 102/252 (40%), Positives = 155/252 (61%), Gaps = 10/252 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS----S 77
           +++ G+S  +L K+  +SVD+IFADPPY L  +G +      +V     SWDK S    S
Sbjct: 19  QLVLGDSFKILTKMKPESVDMIFADPPYFLSNDG-ITCQGGKMVSVNKGSWDKLSESGTS 77

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E    F R W+  C++VLKPNGT+W+ G+ HNI+ IG  L+   F I+N+I W+K+NP 
Sbjct: 78  VEEKHKFNRKWIRLCKKVLKPNGTIWISGTLHNIYSIGMALEQEGFKIINNITWQKTNPP 137

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PN   R F ++ ET++WA  + K   + F+Y  +K  N   QM+  W   +   SE+   
Sbjct: 138 PNLACRCFTHSTETILWAKKNDKKSRHFFDYQKMKKMNGGKQMKDVWTGALTKPSEKTEG 197

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K     HPTQKPE LL +I+++ST+ G +ILDPF GSGT+G  A +  R F+GI++ ++Y
Sbjct: 198 K-----HPTQKPEYLLEKIVLASTEKGQVILDPFCGSGTTGVEAVRFGRKFVGIDVSEEY 252

Query: 258 IDIATKRIASVQ 269
           ++I+ +R+  V+
Sbjct: 253 LEISKRRLEKVK 264


>gi|325131534|gb|EGC54241.1| DNA methylase [Neisseria meningitidis M6190]
          Length = 269

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 100/249 (40%), Positives = 149/249 (59%), Gaps = 11/249 (4%)

Query: 23  IIKGNSISVLEKL----PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +   NS++V+ K+    P    D+IF+DPPY L  +G     +  +V     +WDK    
Sbjct: 28  LYNENSLNVMRKILEKYPNGCFDMIFSDPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGM 86

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            A   F   WL  C  +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP P
Sbjct: 87  AADLEFYEEWLRLCYALLKPNGTIWVCGTFHNIYLIGYLMQTIGYHILNNITWEKPNPPP 146

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           N   R F ++ ET++WA  + KAK +TF+Y+ +KA N+  QM+  W  P  + +E+   K
Sbjct: 147 NLSCRFFTHSTETILWAKKNKKAK-HTFHYEMMKAQNDGKQMKCVWTFPPPNKAEKTFGK 205

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQKP +LL R ++S++  GD+I DPF GSGT+G  A K  R F G E+++D+ 
Sbjct: 206 -----HPTQKPLSLLERCILSASNIGDLIFDPFMGSGTTGVAALKHGRKFCGCELEEDFF 260

Query: 259 DIATKRIAS 267
           ++A KR+  
Sbjct: 261 ELAKKRLEK 269


>gi|225076901|ref|ZP_03720100.1| hypothetical protein NEIFLAOT_01952 [Neisseria flavescens
           NRL30031/H210]
 gi|224951787|gb|EEG32996.1| hypothetical protein NEIFLAOT_01952 [Neisseria flavescens
           NRL30031/H210]
          Length = 271

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 101/249 (40%), Positives = 148/249 (59%), Gaps = 11/249 (4%)

Query: 23  IIKGNSISVLEKL----PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +   NS++V+ K+    P    D+IFADPPY L  +G     +  +V     +WDK    
Sbjct: 28  LYNENSLNVMRKILEKHPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGM 86

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            A   F   WL  C  +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP P
Sbjct: 87  AADLEFYEEWLRLCYALLKPNGTIWVCGTFHNIYLIGYLMQTIGYHILNNITWEKPNPPP 146

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           N   R F ++ ET++WA  + KAK +TF+Y+ +KA N+  QM+  W  P  + +E+   K
Sbjct: 147 NLSCRFFTHSTETILWAKKNKKAK-HTFHYEMMKAQNDGKQMKCVWTFPPPNKTEKTFGK 205

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQKP  LL R ++S++  GD+I DPF GSGT+G  A K  R F G E+++D+ 
Sbjct: 206 -----HPTQKPLPLLERCILSASNIGDLIFDPFMGSGTTGVAALKHDRKFCGCELEEDFF 260

Query: 259 DIATKRIAS 267
           ++A KR+  
Sbjct: 261 ELAKKRLQQ 269


>gi|296314163|ref|ZP_06864104.1| DNA (cytosine-5-)-methyltransferase [Neisseria polysaccharea ATCC
           43768]
 gi|296839202|gb|EFH23140.1| DNA (cytosine-5-)-methyltransferase [Neisseria polysaccharea ATCC
           43768]
          Length = 269

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 100/249 (40%), Positives = 146/249 (58%), Gaps = 11/249 (4%)

Query: 23  IIKGNSISVLEKL----PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +   NS++V+ K+    P    D+IFADPPY L  +G     +  +V     +WDK    
Sbjct: 28  LYNENSLNVMRKILEKHPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGM 86

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            A   F   WL  C  +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP P
Sbjct: 87  AADLEFYEEWLRLCYALLKPNGTIWVCGTFHNIYLIGYLMQTVGYHILNNITWEKPNPPP 146

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           N   R F ++ ET++WA  + KAK +TF+Y+ +KA N   QM+  W  P  + +E+   K
Sbjct: 147 NLSCRFFTHSTETILWAKKNKKAK-HTFHYEMMKAQNNGKQMKCVWTFPPPNKTEKTFGK 205

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQKP  LL R ++S++  G +I DPF GSGT+G  A K  R F G E+++D+ 
Sbjct: 206 -----HPTQKPLPLLERCILSASNIGHLIFDPFMGSGTTGVAALKHGRKFCGCELEEDFF 260

Query: 259 DIATKRIAS 267
           ++A KR+  
Sbjct: 261 ELAKKRLEK 269


>gi|121634196|ref|YP_974441.1| putative modification methylase DpnIIB [Neisseria meningitidis
           FAM18]
 gi|120865902|emb|CAM09638.1| putative Modification methylase DpnIIB [Neisseria meningitidis
           FAM18]
 gi|325139212|gb|EGC61758.1| Modification methylase LlaDCHIB [Neisseria meningitidis ES14902]
 gi|325141587|gb|EGC64053.1| Modification methylase LlaDCHIB [Neisseria meningitidis 961-5945]
 gi|325197609|gb|ADY93065.1| Modification methylase LlaDCHIB [Neisseria meningitidis G2136]
          Length = 269

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 100/249 (40%), Positives = 148/249 (59%), Gaps = 11/249 (4%)

Query: 23  IIKGNSISVLEKL----PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +   NS++V+ K+    P    D+IF+DPPY L  +G     +  +V     +WDK    
Sbjct: 28  LYNENSLNVMRKILEKYPNGCFDMIFSDPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGM 86

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            A   F   WL  C  +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP P
Sbjct: 87  AADLEFYEEWLRLCYALLKPNGTIWVCGTFHNIYLIGYLMQTIGYHILNNITWEKPNPPP 146

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           N   R F ++ ET++WA  + KAK +TF+Y+ +KA N+  QM+  W  P  + +E+   K
Sbjct: 147 NLSCRFFTHSTETILWAKKNKKAK-HTFHYEMMKAQNDGKQMKCVWTFPPPNKAEKTFGK 205

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQKP  LL R ++S++  GD+I DPF GSGT+G  A K  R F G E+++D+ 
Sbjct: 206 -----HPTQKPLPLLERCILSASNIGDLIFDPFMGSGTTGVAALKHGRKFCGCELEEDFF 260

Query: 259 DIATKRIAS 267
           ++A KR+  
Sbjct: 261 ELAKKRLEK 269


>gi|218960496|ref|YP_001740271.1| Modification methylase DpnIIB (Adenine-specific methyltransferase
           DpnIIB) (M.DpnIIB) (M.DpnII 2) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729153|emb|CAO80064.1| Modification methylase DpnIIB (Adenine-specific methyltransferase
           DpnIIB) (M.DpnIIB) (M.DpnII 2) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 269

 Score =  232 bits (592), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 106/276 (38%), Positives = 156/276 (56%), Gaps = 16/276 (5%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+  G+++ ++++L +KS+DLIFADPPYNL     L      +      SWD     +  
Sbjct: 5   KLFNGDALEIIKQLQSKSIDLIFADPPYNLSGENHLTCKSGKIAKCDKGSWD---HIDDI 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F + W+  C RVLK NGT+W+ G+ HN   IG +L+ LN WI+NDI+W K N  P  +
Sbjct: 62  DEFNKKWIEECIRVLKDNGTIWISGTLHNHPSIGVILKQLNLWIINDIIWFKPNAAPLIQ 121

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
             RF  + E +  A+    +K Y FNY+         QMR+ W +           +  +
Sbjct: 122 KNRFVPSTELIWLAAK---SKQYYFNYEMAVRLANGKQMRNLWELSA---------EKHK 169

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
            +HPT+KPE LL RI++  +K  DIILDPF GSGT+GAVAK+L R+F+GIE+ Q Y +IA
Sbjct: 170 TMHPTEKPEKLLERIVLIGSKQEDIILDPFMGSGTTGAVAKRLNRNFVGIEIDQTYYNIA 229

Query: 262 TKRIASVQPLGN-IELTVLTGKRTEPRVAFNLLVER 296
            KRI +     N ++       +T  ++ F   +E+
Sbjct: 230 QKRIENTNVETNLVQFLEKLTHKTSSQLDFYSTIEK 265


>gi|307701788|ref|ZP_07638802.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
 gi|307613046|gb|EFN92301.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
          Length = 252

 Score =  232 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 102/243 (41%), Positives = 148/243 (60%), Gaps = 6/243 (2%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G++  +L ++   SVD+IFADPPY L  NG +       V     +WDK    E    F 
Sbjct: 2   GDAFEILARIAQSSVDMIFADPPYFLS-NGGISCSGGRQVSVNKGAWDKGMGTEEKHGFN 60

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
           R W+  C+RVLK +G++WV G++HNI+ +G  L+   F ILN+I W+K NP PN   R F
Sbjct: 61  RRWVRQCKRVLKRDGSIWVSGTFHNIYSLGFALEQEGFKILNNITWQKLNPPPNLACRCF 120

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
            ++ ET+IWA  + +   + F+Y  +K  N   QM+  W   +   SE++  K     HP
Sbjct: 121 THSTETVIWARKNERKARHFFDYPLMKTLNGGKQMKDVWAGTLTPKSEKICGK-----HP 175

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           TQKPE LL RI+++ST+ GD++LDPF GSGT+  VAK+L R  IGI+  ++Y++IA KR+
Sbjct: 176 TQKPEYLLERIILASTREGDLVLDPFVGSGTTAVVAKRLGRYSIGIDSVEEYLEIAGKRL 235

Query: 266 ASV 268
           A  
Sbjct: 236 AHT 238


>gi|238022785|ref|ZP_04603211.1| hypothetical protein GCWU000324_02696 [Kingella oralis ATCC 51147]
 gi|237865988|gb|EEP67124.1| hypothetical protein GCWU000324_02696 [Kingella oralis ATCC 51147]
          Length = 262

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 104/250 (41%), Positives = 143/250 (57%), Gaps = 11/250 (4%)

Query: 21  DKIIKGNSISVLEKL----PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
             I   N++ V+ ++    P    D+IFADPPY L  NG     +  +V      WDK  
Sbjct: 19  HIIYHENALLVMRRILDKYPNGCFDMIFADPPYFLS-NGGFTCQNGQMVSVNKGDWDKSQ 77

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
              A  AF   WL  C  +LKPNG++WV G++HNI+ IG ++Q L + ILN+I W K NP
Sbjct: 78  GMAADMAFYEEWLGLCYALLKPNGSIWVCGTHHNIYLIGYLMQTLGYHILNNITWEKPNP 137

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
            PN   R F ++ ETL+WA    +AK +TF YD +KA N   QM+S W I   + SE+  
Sbjct: 138 PPNLSCRFFTHSTETLLWAKKGKRAK-HTFQYDVMKAQNGGKQMKSVWQIAPPAASEKTL 196

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
            K     HPTQKP ALL R + +++ P D I DPF GSGT+G  A K  R+F G E+  +
Sbjct: 197 GK-----HPTQKPLALLERCIQAASNPNDWIFDPFMGSGTTGVAALKHGRNFCGCEINDE 251

Query: 257 YIDIATKRIA 266
           + ++A KR+ 
Sbjct: 252 FFELAKKRLQ 261


>gi|296274511|ref|YP_003657142.1| DNA methylase N-4/N-6 domain-containing protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296098685|gb|ADG94635.1| DNA methylase N-4/N-6 domain protein [Arcobacter nitrofigilis DSM
           7299]
          Length = 263

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 112/255 (43%), Positives = 151/255 (59%), Gaps = 16/255 (6%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  GN I +L+K+   S+D+IFADPPY L  NG +   +  +V      WDK    E   
Sbjct: 16  LYYGNCIEILKKIKKDSIDMIFADPPYGLSNNG-ITCKNGKMVSVNKGEWDKSKGIEEDF 74

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   W+ AC+RVLKPNGT+W+ G+YH+I+  G  LQ   F +LN+I W K N  PN   
Sbjct: 75  KFHNQWIKACQRVLKPNGTIWISGTYHSIYACGYALQKNKFKVLNEISWFKPNAAPNLSC 134

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKA---------ANEDVQMRSDWLIPICSGSE 193
           + F  +HET+IWA      K +T+NY  +K           NED QMRS W I   S  E
Sbjct: 135 KYFTASHETIIWAIKESTQK-HTYNYKTMKHGDWHKKDIIKNEDKQMRSVWSIATPSKKE 193

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           +L  K     HPTQKP  LL RI++SST   DIILDPF GS T+G VA +  R FIGI+M
Sbjct: 194 KLFGK-----HPTQKPIKLLERIILSSTNENDIILDPFTGSSTTGVVALQNNRQFIGIDM 248

Query: 254 KQDYIDIATKRIASV 268
           +++Y++++ KRI ++
Sbjct: 249 EKEYLNLSIKRIHNI 263


>gi|210620631|ref|ZP_03292155.1| hypothetical protein CLOHIR_00098 [Clostridium hiranonis DSM 13275]
 gi|210155240|gb|EEA86246.1| hypothetical protein CLOHIR_00098 [Clostridium hiranonis DSM 13275]
          Length = 267

 Score =  229 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 108/254 (42%), Positives = 154/254 (60%), Gaps = 9/254 (3%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            + K K+I G++ S+L K+  +S+D+IFADPPY L  NG +      +V     SWD  +
Sbjct: 15  EDEKSKLILGDTFSILSKIKKESIDMIFADPPYFLSNNG-ITCSGGKMVSVNKGSWDTLN 73

Query: 77  ---SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
              S      F R W+  C+RVLKPNGT+W+ G+ HNI+ IG  L+   F I+N+I W+K
Sbjct: 74  LGNSVSEKHKFNRKWIKMCKRVLKPNGTIWISGTMHNIYSIGMALEQEGFKIINNITWQK 133

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
           +NP PN   R F ++ ET++WA  + K   + FNY+ +K  N   QM+  W   +   SE
Sbjct: 134 TNPPPNLACRCFTHSTETVLWAKKNDKKSKHLFNYNDMKEMNGGKQMKDVWTGSLTKKSE 193

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           +   K     HPTQKPE LL RI++SST+   IILDPF GSGT+G +AK+  R FIGI+ 
Sbjct: 194 KSEGK-----HPTQKPEYLLERIVISSTEENQIILDPFCGSGTTGVIAKRYGRKFIGIDN 248

Query: 254 KQDYIDIATKRIAS 267
           + +Y++I  KR+  
Sbjct: 249 EIEYLNITKKRLEK 262


>gi|326560996|gb|EGE11361.1| DNA methylase N-4/N-6 domain protein [Moraxella catarrhalis 7169]
          Length = 273

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 105/273 (38%), Positives = 156/273 (57%), Gaps = 10/273 (3%)

Query: 14  NSIFEWKDK---IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
           N  FE  D+   I +GN I ++    + S+D+IFADPPY L  +G  ++ +  +      
Sbjct: 4   NPYFEASDQTFNIYQGNCIDIMSHFQSNSIDMIFADPPYFLSNDGLTFK-NGIIQSVNKG 62

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
            WD   +  +   F+  W+   +R+LK NGT+W+ G++HNIF +G +L+  NF ILN I 
Sbjct: 63  EWDTNDNENSIYNFSHEWIAQSKRLLKDNGTIWISGTHHNIFTVGQLLKENNFKILNIIT 122

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W K NP PNF  R F  + E +IWA    K   Y F+YD +K  N D Q +  W +P   
Sbjct: 123 WEKPNPPPNFSCRYFTYSSEWIIWARKHSKIPHY-FDYDLMKKLNGDKQAKDVWRLPAVG 181

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
             E+ + K     HPTQKP  LLSRI++SST+ GD+ILDPF GSGT+G  A  L R FIG
Sbjct: 182 SWEKTQGK-----HPTQKPLGLLSRIILSSTQKGDLILDPFSGSGTTGIAATILGRQFIG 236

Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
           I+ + ++++++ +R  ++ P    E      ++
Sbjct: 237 IDKELEFLELSKRRYQAITPKSKYEFKQKIREQ 269


>gi|300870838|ref|YP_003785709.1| DNA methylase N-4/N-6 domain-containing protein [Brachyspira
           pilosicoli 95/1000]
 gi|300688537|gb|ADK31208.1| DNA methylase N-4/N-6 domain protein [Brachyspira pilosicoli
           95/1000]
          Length = 260

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 105/258 (40%), Positives = 149/258 (57%), Gaps = 14/258 (5%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            D +I GN + +L+ L   S+D+IFADPPYNL  NG         V      WD    F+
Sbjct: 1   MDTLINGNCLEILDTLEENSIDMIFADPPYNLSNNG-TTCHSGKRVSVNKGEWDISLGFD 59

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
              AF   W+  CRRVLK NGT+W+ G+ H+I++ G +L+ L F+ILNDI W K N  PN
Sbjct: 60  QDVAFHETWISKCRRVLKDNGTIWISGTNHSIYKCGFILEKLGFYILNDIAWYKPNAAPN 119

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTF-------NYDALKAANEDVQMRSDWLIPICSGS 192
                F ++HETLIWA  + KAK +         +++  K  ++  QMRS W I   + +
Sbjct: 120 LSCNVFAHSHETLIWAKKNKKAKHFYNYDLMKNLDFEKDKLKSKGKQMRSVWSISTPAKN 179

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGI 251
           E++  K     HPTQKP  LL RI+++STK  D ILDPF GSGT+      +  R++IGI
Sbjct: 180 EKIYGK-----HPTQKPIDLLIRIILASTKDNDTILDPFNGSGTTAVACAMIGNRNYIGI 234

Query: 252 EMKQDYIDIATKRIASVQ 269
           ++  +YI++  KRI  ++
Sbjct: 235 DIDNNYIELTKKRIKDIE 252


>gi|325127469|gb|EGC50398.1| adenine-specific methyltransferase LlaDCHIB [Neisseria meningitidis
           N1568]
          Length = 266

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 99/245 (40%), Positives = 145/245 (59%), Gaps = 11/245 (4%)

Query: 23  IIKGNSISVLEKL----PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +   NS++V+ K+    P    D+IFADPPY L  +G     +  +V     +WDK    
Sbjct: 28  LYNENSLNVMRKILEKYPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGM 86

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            A   F   WL  C  +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP P
Sbjct: 87  AADLEFYEEWLRLCYALLKPNGTIWVCGTFHNIYLIGYLMQTIGYHILNNITWEKPNPPP 146

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           N   R F ++ ET++WA  + KAK +TF+Y+ +KA  +  QM+  W  P  + +E+   K
Sbjct: 147 NLSCRFFTHSTETILWAKKNKKAK-HTFHYEMMKAQTDGKQMKCVWTFPPPNKAEKTFGK 205

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQKP  LL R ++S++  GD+I DPF GSGT+G  A K  R F G E+++D+ 
Sbjct: 206 -----HPTQKPLPLLERCILSASNIGDLIFDPFMGSGTTGVAALKHGRKFCGCELEEDFF 260

Query: 259 DIATK 263
           ++A K
Sbjct: 261 ELAKK 265


>gi|257456835|ref|ZP_05622019.1| DNA methylase [Treponema vincentii ATCC 35580]
 gi|257445841|gb|EEV20900.1| DNA methylase [Treponema vincentii ATCC 35580]
          Length = 304

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 110/265 (41%), Positives = 152/265 (57%), Gaps = 16/265 (6%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           +    +  + I   + + VLE+LP +S+D+IFADPPY L  +G     +  +V      W
Sbjct: 35  EPYYEDSVNTIFNIDCLEVLERLPDESIDMIFADPPYMLSNDG-FTCQNGRMVSVNKGKW 93

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           DK    E    F  AW+ ACRRVLKP GT+W+ G+YH+I++ G +LQ  NF ILNDI W 
Sbjct: 94  DKSCGLETDMQFHNAWIAACRRVLKPEGTIWISGTYHSIYQCGYLLQKNNFHILNDIAWF 153

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA--------ANEDVQMRSDW 184
           K N  PN   R F  +HETLIWA    K+K +TFNYDA+K              QMRS W
Sbjct: 154 KPNAAPNLSCRFFTASHETLIWARKDKKSK-HTFNYDAMKNGFFPEDKLKKAHSQMRSVW 212

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
            IP     E+   K     HPTQKP +LL RI+++ST    IILDPF G GT+G  +  +
Sbjct: 213 SIPTPPAGEKELGK-----HPTQKPLSLLKRIILASTNDNAIILDPFNGGGTTGIASTII 267

Query: 245 R-RSFIGIEMKQDYIDIATKRIASV 268
             R +IGIE+ ++Y ++  +++  +
Sbjct: 268 GKRYYIGIEIDKEYCELTKRKLMQI 292


>gi|153005643|ref|YP_001379968.1| DNA methylase N-4/N-6 domain-containing protein [Anaeromyxobacter
           sp. Fw109-5]
 gi|152029216|gb|ABS26984.1| DNA methylase N-4/N-6 domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 282

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 109/255 (42%), Positives = 138/255 (54%), Gaps = 9/255 (3%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +++G+ I  LE LP  SVD+ FADPPY L  NG                WD         
Sbjct: 25  LVQGDCIEALEALPPHSVDVAFADPPYMLS-NGGTTCQSGRRTSVNKGQWDASRGVVEDH 83

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           AF   WL A RRVLKP+GTLWV G+ H IF IG  +Q L + +LN I W K N  PN   
Sbjct: 84  AFQTRWLTAVRRVLKPSGTLWVSGTQHVIFSIGFAMQELGYHLLNTITWYKPNASPNLAC 143

Query: 143 RRFQNAHETLIWASPSPKAK-GYTFNYDALKAANEDVQMRSDWLIPICSGSERLR----- 196
           R F ++ E L+WASP      G+ FNY A+KA N   QMR  W IP   G + +      
Sbjct: 144 RFFTHSTEILLWASPMRTRPLGHRFNYKAMKAENGGKQMRDLWQIPAPEGDQVVWSVPTP 203

Query: 197 --NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
              +     HPTQKP ALL R+L SS   GD++LDPF GSGT+G  A K    F+G+E  
Sbjct: 204 GPREKVHGRHPTQKPLALLERVLASSAAAGDLVLDPFSGSGTTGVAAVKAGCRFLGLERD 263

Query: 255 QDYIDIATKRIASVQ 269
             Y+D+A +R+ + Q
Sbjct: 264 PAYVDLAARRMRAAQ 278


>gi|315453579|ref|YP_004073849.1| DNA methylase N-4/N-6 domain-containing protein [Helicobacter felis
           ATCC 49179]
 gi|315132631|emb|CBY83259.1| DNA methylase N-4/N-6 domain [Helicobacter felis ATCC 49179]
          Length = 266

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 105/247 (42%), Positives = 147/247 (59%), Gaps = 8/247 (3%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + K K+   +   VL  L  + VDLIFADPPY L  NG L      +V     +WDK   
Sbjct: 10  DQKFKLYHADCKEVLPHLQGQ-VDLIFADPPYFLS-NGGLSIQSGQIVSVDKGAWDKSQG 67

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E   AF   WL   +  LKP G+L++  +YHN+F +G  LQ+L F ++N I W KSNP 
Sbjct: 68  LEHMHAFNMEWLGLAKDALKPTGSLFISATYHNLFSLGLALQSLGFKLINLITWHKSNPP 127

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PNF  R   +A E ++WA  SP    + FNY+ +KA NE+ QMR  W +P  +  E+   
Sbjct: 128 PNFSCRTLVHASEQILWARKSP-KHAHIFNYEHMKALNENKQMRDVWTLPAIAPWEKKLG 186

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K     HPTQKP +LL+R++V +++   +I DPF GSG++G  A  L RSF+GIE +Q++
Sbjct: 187 K-----HPTQKPLSLLTRLIVMASQQESLICDPFSGSGSTGIAANLLGRSFVGIEREQEF 241

Query: 258 IDIATKR 264
           I++ATKR
Sbjct: 242 IELATKR 248


>gi|108763695|ref|YP_633292.1| putative adenine-specific DNA methyltransferase [Myxococcus xanthus
           DK 1622]
 gi|108467575|gb|ABF92760.1| putative adenine-specific DNA methyltransferase [Myxococcus xanthus
           DK 1622]
          Length = 294

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 103/263 (39%), Positives = 140/263 (53%), Gaps = 17/263 (6%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++ G+S+ ++ +   ++ D+IFADPPY L  NG         V      WD     E  
Sbjct: 30  TLLHGDSLELMSQFEPQTFDMIFADPPYFLS-NGGTTCKGGKRVSVAKGGWDVSRGVEED 88

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             FT  WL AC+R+LKP GTLWV G+ H IF  G  +Q L + +LN + W K N  PN  
Sbjct: 89  HKFTTEWLAACQRLLKPTGTLWVSGTQHVIFNAGFAMQKLGYKLLNTVTWFKPNASPNLA 148

Query: 142 GRRFQNAHETLIWASPSPKAK-GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            R F ++ E LIWASP    K  +TFNY  +KA N   QMR  W +P    +E   + +G
Sbjct: 149 CRYFTHSTELLIWASPKSGGKLQHTFNYARMKAENGGKQMRDAWALPPSGDAELTADGEG 208

Query: 201 EKL---------------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
                             HPTQKP ALL RIL +S  P  ++LDPF GSGTSG  A KL 
Sbjct: 209 RMWTLTVPRGGEEKAFGSHPTQKPVALLERILEASCPPDALVLDPFNGSGTSGVAALKLG 268

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
             ++GI+M + Y+ ++ KR+ + 
Sbjct: 269 HRYVGIDMDEKYLALSEKRLNAA 291


>gi|462633|sp|P34721|MT1B_MORBO RecName: Full=Modification methylase MboIB; Short=M.MboIB; AltName:
           Full=Adenine-specific methyltransferase MboIB; AltName:
           Full=M.MboI C
 gi|303630|dbj|BAA03073.1| MboI methyltransferase C [Moraxella bovis]
          Length = 273

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 106/273 (38%), Positives = 152/273 (55%), Gaps = 10/273 (3%)

Query: 14  NSIFEWKDK---IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
              FE  DK   I +GN I  +      S+D+IFADPPY L  +G  ++ +  +      
Sbjct: 4   KPYFESDDKNFNIYQGNCIDFMSHFQDNSIDMIFADPPYFLSNDGLTFK-NSIIQSVNKG 62

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
            WDK  +  +   F   W+   R++LK NGT+W+ G++HNIF +G +L+  NF ILN I 
Sbjct: 63  EWDKNDNEASIYNFNHEWIAQARQLLKDNGTIWISGTHHNIFTVGQVLKENNFKILNIIT 122

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W K NP PNF  R F  + E +IWA    K   Y FNYD +K  N D Q +  W +P   
Sbjct: 123 WEKPNPPPNFSCRYFTYSSEWIIWARKHSKIPHY-FNYDLMKKLNGDKQQKDIWRLPAVG 181

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
             E+ + K     HPTQKP  LLSRI++SST+  D+ILDPF GSGT+G     L R++IG
Sbjct: 182 SWEKTQGK-----HPTQKPLGLLSRIILSSTQKDDLILDPFSGSGTTGIAGVLLDRNYIG 236

Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
           IE + ++++++ +R   + P+   E      K+
Sbjct: 237 IEQELEFLELSKRRYHEITPVLKNEFKQKIRKQ 269


>gi|306818165|ref|ZP_07451896.1| modification methylase BabI [Mobiluncus mulieris ATCC 35239]
 gi|304649129|gb|EFM46423.1| modification methylase BabI [Mobiluncus mulieris ATCC 35239]
          Length = 323

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 97/233 (41%), Positives = 139/233 (59%), Gaps = 6/233 (2%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I  G++  +L ++   SVD+IFADPPY L  NG +       V     +WD+    E  
Sbjct: 23  RIFLGDAFEILARIAQSSVDMIFADPPYFLS-NGGISCSGGRQVSVNKGAWDRGMGTEEK 81

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F R W+  C+RVLK +G++WV G++HNI+ +G  L+   F ILN+I W+K NP PN  
Sbjct: 82  HGFNRRWVRQCKRVLKRDGSIWVSGTFHNIYSLGFALEQEGFKILNNITWQKLNPPPNLA 141

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R F ++ ET+IWA  + +   + F+Y  +K  N   QM+  W   +   SE++  K   
Sbjct: 142 CRCFTHSTETVIWARKNERKARHFFDYPLMKTLNGGKQMKDVWAGTLTPKSEKICGK--- 198

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
             HPTQKPE LL RI+++ST+ GD++LDPF GSGT+  VAK+L R  IGIE  
Sbjct: 199 --HPTQKPEYLLERIILASTREGDLVLDPFVGSGTTAVVAKRLGRYSIGIETN 249


>gi|254492921|ref|ZP_05106092.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae 1291]
 gi|268598172|ref|ZP_06132339.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae MS11]
 gi|268600516|ref|ZP_06134683.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae PID18]
 gi|268602749|ref|ZP_06136916.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae PID1]
 gi|268681298|ref|ZP_06148160.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae PID332]
 gi|291044684|ref|ZP_06570393.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae DGI2]
 gi|226511961|gb|EEH61306.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae 1291]
 gi|268582303|gb|EEZ46979.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae MS11]
 gi|268584647|gb|EEZ49323.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae PID18]
 gi|268586880|gb|EEZ51556.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae PID1]
 gi|268621582|gb|EEZ53982.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae PID332]
 gi|291011578|gb|EFE03574.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae DGI2]
          Length = 252

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 98/241 (40%), Positives = 144/241 (59%), Gaps = 11/241 (4%)

Query: 23  IIKGNSISVLEKL----PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +   NS++V+ K+    P    D+IFADPPY L  +G     +  +V     +WDK    
Sbjct: 19  LYNENSLNVMRKILEKHPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGM 77

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            A   F   WL  C  +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP P
Sbjct: 78  AADLEFYEEWLRLCYALLKPNGTIWVCGTFHNIYLIGYLMQTVGYHILNNITWEKPNPPP 137

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           N   R F ++ ET++WA  + KAK +TF+Y+ +KA N   QM+  W  P  + +E+   K
Sbjct: 138 NLSCRFFTHSTETILWAKKNKKAK-HTFHYEMMKAQNNGKQMKCVWTFPPPNKTEKTFGK 196

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQKP +LL R ++S++  GD+I DPF GSGT+G  A K  R F G E+++D++
Sbjct: 197 -----HPTQKPLSLLERCILSASNIGDLIFDPFMGSGTTGVAALKHGRRFCGCELEEDFL 251

Query: 259 D 259
           +
Sbjct: 252 N 252


>gi|218961616|ref|YP_001741391.1| Modification methylase DpnIIB (Adenine-specific methyltransferase
           DpnIIB) (M.DpnIIB) (M.DpnII 2) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730273|emb|CAO81185.1| Modification methylase DpnIIB (Adenine-specific methyltransferase
           DpnIIB) (M.DpnIIB) (M.DpnII 2) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 263

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 101/253 (39%), Positives = 144/253 (56%), Gaps = 13/253 (5%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  GN + +L++L   S+D+IFADPPY L  +G +      +V      WD    F    
Sbjct: 16  LYWGNCMEILKELEPNSIDMIFADPPYFLS-DGTITCKSGKMVSVKKGDWDLLDEFNNKS 74

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   W+  CR++LKP+GT+W+ G+YH+I++ G  LQ   F I+NDI W K N  PN   
Sbjct: 75  EFHHKWISVCRQILKPSGTIWISGTYHSIYQCGYELQKQGFRIINDICWFKPNAAPNLTR 134

Query: 143 RRFQNAHETLIWASPSPKAK-GYTF------NYDALKAANEDVQMRSDWLIPICSGSERL 195
           + F  +HET++WA   P  K  Y +      ++       +  QMRS W IP     E++
Sbjct: 135 KCFTASHETILWAIKDPLQKQKYHYELMKNTDWMGDIINKKGKQMRSVWCIPTTPAREKI 194

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
             K     HPTQKP ALL RI++SST  GD++LDPF GSGT+G VAKK  R++IGI++  
Sbjct: 195 HGK-----HPTQKPIALLERIILSSTDEGDLVLDPFNGSGTTGVVAKKYHRNYIGIDINI 249

Query: 256 DYIDIATKRIASV 268
           DY+ +  +RI   
Sbjct: 250 DYLKLTIERIKDT 262


>gi|189485748|ref|YP_001956689.1| DNA modification methylase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287707|dbj|BAG14228.1| DNA modification methylase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 310

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 113/299 (37%), Positives = 158/299 (52%), Gaps = 27/299 (9%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            +  G+ I +L+ LP  SV++IFADPPY L  NG         V      WD     E  
Sbjct: 14  TLYNGDCIEILKLLPIDSVNMIFADPPYFLS-NGSFTCHAGKRVSVKKGDWDLGGGTEKN 72

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F  AWL AC+RVLKPNGT+WV G+YH+I++ G  L+   +  LNDI+W K N  PN  
Sbjct: 73  LEFHIAWLKACKRVLKPNGTIWVSGTYHSIYQCGVALEINGYHFLNDIIWFKPNAAPNLS 132

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV--------QMRSDWLIPICSGSE 193
            R F  +HET+IW+    K++ + FNYD +K              QMRS W I     SE
Sbjct: 133 CRFFTASHETIIWSKKEKKSR-HIFNYDLMKKGQWKEDLLKKDGSQMRSVWSIGTPKPSE 191

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           ++  K     HPTQKP  LL RI+++ST+ GDIILDPF GS T+G  A    R FIGI+ 
Sbjct: 192 KIFGK-----HPTQKPLDLLKRIVLASTEAGDIILDPFTGSSTTGIAAVTNGRMFIGIDK 246

Query: 254 KQDYIDIATKRIASVQ--PLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQG 310
           ++ Y++++ KR  ++    +G  E   +     +P   F       L++P     + + 
Sbjct: 247 EKRYLELSVKRFENLNEYKIGAAETDKINCSSVQP---F-------LLEPKAKYVSRKR 295


>gi|257455789|ref|ZP_05621015.1| DNA methylase [Enhydrobacter aerosaccus SK60]
 gi|257446803|gb|EEV21820.1| DNA methylase [Enhydrobacter aerosaccus SK60]
          Length = 269

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 101/252 (40%), Positives = 149/252 (59%), Gaps = 9/252 (3%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           Q+ + ++   +++G+ + +L  +  KS+++IFADPPY L  +G L   +  +       W
Sbjct: 5   QSELQDF--TLLQGDCLHILPTIDDKSINMIFADPPYFLSNDG-LTVKNGMVQSVNKGEW 61

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           DKFS       FT  WL   +R+L  NGT+W+ G++HNIF +G +L  LNF ILN I W 
Sbjct: 62  DKFSDDNEVYIFTYDWLSQAKRMLADNGTIWMSGTHHNIFTLGRVLSQLNFKILNMITWE 121

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K NP PNF  R F  + E +IWA  +PK   Y F+Y+ +K+ N D QM+  W +P  S  
Sbjct: 122 KPNPPPNFSCRYFTYSTEWIIWARKNPKIPHY-FDYELMKSLNGDKQMKDVWRLPAVSSW 180

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           E+   K     HPTQKP  LLSRI+++STK  D++LDPF GS T+G  A    R FIG++
Sbjct: 181 EKQFGK-----HPTQKPLGLLSRIVLASTKANDLVLDPFTGSSTTGIAANLFGRKFIGVD 235

Query: 253 MKQDYIDIATKR 264
              +++ ++  R
Sbjct: 236 QDSNFLTLSKNR 247


>gi|323140475|ref|ZP_08075403.1| DNA (cytosine-5-)-methyltransferase [Phascolarctobacterium sp. YIT
           12067]
 gi|322415043|gb|EFY05834.1| DNA (cytosine-5-)-methyltransferase [Phascolarctobacterium sp. YIT
           12067]
          Length = 269

 Score =  222 bits (565), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 107/252 (42%), Positives = 149/252 (59%), Gaps = 10/252 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +++ G++  +L+KL  +SVD+IFADPPY L  NG   R    +V     +WD     E  
Sbjct: 19  QLLLGDTFELLQKLRPESVDVIFADPPYFLSNNGITCRS-GKMVSVNKAAWDMVDDKEHM 77

Query: 82  DA----FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            A    F R W+  C++VLKPNGT+W+ G++HNIF IG  L+   F I+N+I W+K+NP 
Sbjct: 78  LANKHQFNRRWINLCKKVLKPNGTIWISGTFHNIFSIGMALEEEGFRIINNITWQKTNPP 137

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PN   R F ++ ET+IWA    K   Y FNY  +K  N   QM+  W   +   SE+   
Sbjct: 138 PNLACRCFTHSTETIIWACKDDKKAKYFFNYALMKEINGGKQMKDVWTGSLTKPSEKKFG 197

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K     HPTQKPE LL RIL +ST+ G I+LDPF GSGT+G  A +   +FIGI+  ++Y
Sbjct: 198 K-----HPTQKPEYLLERILRASTQAGYIVLDPFCGSGTTGVEALRNGCNFIGIDNVEEY 252

Query: 258 IDIATKRIASVQ 269
           + +  KR+   Q
Sbjct: 253 LKLTQKRLDKEQ 264


>gi|162447937|ref|YP_001621069.1| DNA methylase [Acholeplasma laidlawii PG-8A]
 gi|161986044|gb|ABX81693.1| DNA methylase [Acholeplasma laidlawii PG-8A]
          Length = 256

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 99/257 (38%), Positives = 154/257 (59%), Gaps = 10/257 (3%)

Query: 14  NSIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
              ++ ++ K+  G+S  +L++L  KSVD+IFADPPY L  NG +      +V     +W
Sbjct: 3   KPYYDNRNAKLYLGDSFEILDELDEKSVDMIFADPPYFLSNNG-ITCQGGKMVSVNKATW 61

Query: 73  DK-FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           DK   + E    +   WL  C+R+LK  GT+W+ G+ HNI+ IG  L+   F I+N+I W
Sbjct: 62  DKTEMTIEEKIKYNTTWLNKCKRILKDTGTIWISGTLHNIYIIGVCLELEGFQIINNITW 121

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
            K+NP P+   + F ++ ET++WA          F+Y  +K+ N + QM+  W   +   
Sbjct: 122 EKTNPPPHLARKAFTHSTETVLWARKKGSKN--YFDYSLMKSLNNNKQMKDVWRFSLTKP 179

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           SE+   K     HPTQKP ALL RI+++STK GD++LDPF GSGT+G  +  L R +IGI
Sbjct: 180 SEKRLGK-----HPTQKPLALLERIILASTKEGDVVLDPFSGSGTTGVASIMLNRKYIGI 234

Query: 252 EMKQDYIDIATKRIASV 268
           + ++DY++++ KR+ S+
Sbjct: 235 DFEKDYLNLSIKRLESI 251


>gi|187251096|ref|YP_001875578.1| DNA methylase N-4/N-6 domain-containing protein [Elusimicrobium
           minutum Pei191]
 gi|186971256|gb|ACC98241.1| DNA methylase N-4/N-6 domain protein [Elusimicrobium minutum
           Pei191]
          Length = 266

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 110/260 (42%), Positives = 152/260 (58%), Gaps = 15/260 (5%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+I GNSI V++  P +S D+IFADPPY L  NG               SWDK + F++ 
Sbjct: 14  KLILGNSIDVIKSFPDESCDMIFADPPYMLS-NGGFTVQSGKRASVNKGSWDKSNGFDSD 72

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F   W+  C+R+LK NGT+W+ G+YH+I++ G  LQ  N+ ILNDI W K N  PN  
Sbjct: 73  FEFHNNWIKECKRILKKNGTIWISGTYHSIYQCGFALQKNNYHILNDIAWFKPNAAPNLS 132

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYD--------ALKAANEDVQMRSDWLIPICSGSE 193
            R F  +HETLIWA  +   K +TFNYD               ++QMRS W I     SE
Sbjct: 133 CRFFTASHETLIWARKNKIGK-HTFNYDKVKNGIWSEDFLKKPNLQMRSVWAINTPKKSE 191

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           ++  K     HPTQKP  L+ RI++SSTK  D+ILDPF GS T+G  A   +R+FIGI++
Sbjct: 192 KVFGK-----HPTQKPFDLMRRIILSSTKENDLILDPFTGSSTTGLAATYYKRNFIGIDI 246

Query: 254 KQDYIDIATKRIASVQPLGN 273
           +Q Y++++ KR   ++ +  
Sbjct: 247 EQKYLELSKKRYEQLRSMKK 266


>gi|257461260|ref|ZP_05626357.1| DNA methylase [Campylobacter gracilis RM3268]
 gi|257441288|gb|EEV16434.1| DNA methylase [Campylobacter gracilis RM3268]
          Length = 271

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 99/243 (40%), Positives = 137/243 (56%), Gaps = 8/243 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+ KG+  ++L K   +  DLIFADPPY L  +G L   +  +V      WDK    +  
Sbjct: 9   KLFKGDCFNILPKFKGE-FDLIFADPPYFLSNDG-LSIQNGQIVSVNKGEWDKSYGIDEI 66

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   WL   +  L  NG++ + G+YHNIF IG  LQ L++ ILN I W K+NP PNF 
Sbjct: 67  DKFNLEWLALAKDALANNGSVMISGTYHNIFSIGRALQKLDYKILNVITWAKTNPPPNFS 126

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R   +  E +IWA  S K K + FNY+ +K  N + QMR  W +P  +  E+   K   
Sbjct: 127 CRYLTHGSEQIIWARKSEKFK-HIFNYELMKKLNGNKQMRDVWSLPAIAPWEKACGK--- 182

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP  LL R+++ ++    ++ DPF GS T+G  A  L R F+GIE + ++IDIA
Sbjct: 183 --HPTQKPLPLLVRLILMASTQNSVVCDPFAGSATTGVAANLLGRKFVGIEKEDEFIDIA 240

Query: 262 TKR 264
            KR
Sbjct: 241 VKR 243


>gi|86159277|ref|YP_466062.1| DNA methylase N-4/N-6 [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775788|gb|ABC82625.1| DNA methylase N-4/N-6 [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 285

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 106/257 (41%), Positives = 141/257 (54%), Gaps = 12/257 (4%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +++G+ +  LE+LP  SVD+ FADPPY L  NG               SWD    F A  
Sbjct: 25  LVQGDCVEALERLPPHSVDVAFADPPYMLS-NGGSTCQGGRRTSVNKGSWDASGGFAADH 83

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           AF   WL A R+VLKP+GTLWV G+ H IF IG  +Q + F +LN + W K N  PN   
Sbjct: 84  AFQARWLQAVRKVLKPSGTLWVSGTQHVIFSIGYAMQEMGFHLLNTVTWYKPNASPNLAC 143

Query: 143 RRFQNAHETLIWASPSPKAK-GYTFNYDALKAANEDVQMRSDWLI---PICSGSERLR-- 196
           R F ++ E L+WASP       + FNY A+K AN   QMR  W I   P   G + +   
Sbjct: 144 RFFTHSTEILLWASPMKTRPLAHRFNYRAMKTANGGKQMRDLWEIADRPAPGGDQVVWSV 203

Query: 197 -----NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
                 +     HPTQKP ALL R+L +S  PGD++LDPF GSGT+G  A +    F+G+
Sbjct: 204 PTPGPREKVHGRHPTQKPLALLERVLAASAAPGDLVLDPFSGSGTTGVAALRAGCRFLGL 263

Query: 252 EMKQDYIDIATKRIASV 268
           E    Y+D+A +R+ + 
Sbjct: 264 ERDPSYVDLAARRLRAT 280


>gi|220918133|ref|YP_002493437.1| DNA methylase N-4/N-6 domain protein [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219955987|gb|ACL66371.1| DNA methylase N-4/N-6 domain protein [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 286

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 106/257 (41%), Positives = 140/257 (54%), Gaps = 12/257 (4%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +++G+ +  LE+LP  SVD+ FADPPY L  NG               SWD    F A  
Sbjct: 26  LVQGDCVEALERLPPHSVDVAFADPPYMLS-NGGSTCQGGRRTSVNKGSWDASGGFAADH 84

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           AF   WL A R+VLKP+GTLWV G+ H IF IG  +Q L F +LN + W K N  PN   
Sbjct: 85  AFQARWLQAVRKVLKPSGTLWVSGTQHVIFSIGYAMQELGFHLLNTVTWYKPNASPNLAC 144

Query: 143 RRFQNAHETLIWASPSPKAK-GYTFNYDALKAANEDVQMRSDWLI---PICSGSERLR-- 196
           R F ++ E L+WASP       + FNY A+K AN   QMR  W I   P   G + +   
Sbjct: 145 RFFTHSTEILLWASPMKARPLAHRFNYRAMKTANGGKQMRDLWEIADRPAPGGDQVVWSV 204

Query: 197 -----NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
                 +     HPTQKP ALL R+L +S  PGD++LDPF GS T+G  A +    F+G+
Sbjct: 205 PTPGPREKVHGRHPTQKPLALLERVLAASAAPGDLVLDPFSGSATTGVAALRAGCRFLGL 264

Query: 252 EMKQDYIDIATKRIASV 268
           E    Y+D+A +R+ + 
Sbjct: 265 ERDPGYVDLAARRLRAT 281


>gi|197123344|ref|YP_002135295.1| DNA methylase N-4/N-6 domain protein [Anaeromyxobacter sp. K]
 gi|196173193|gb|ACG74166.1| DNA methylase N-4/N-6 domain protein [Anaeromyxobacter sp. K]
          Length = 286

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 106/257 (41%), Positives = 140/257 (54%), Gaps = 12/257 (4%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +++G+ +  LE+LP  SVD+ FADPPY L  NG               SWD    F A  
Sbjct: 26  LVQGDCVEALERLPPHSVDVAFADPPYMLS-NGGSTCQGGRRTSVNKGSWDASGGFAADH 84

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           AF   WL A R+VLKP+GTLWV G+ H IF IG  +Q L F +LN + W K N  PN   
Sbjct: 85  AFQARWLQAVRKVLKPSGTLWVSGTQHVIFSIGYAMQELGFHLLNTVTWYKPNASPNLAC 144

Query: 143 RRFQNAHETLIWASPSPKAK-GYTFNYDALKAANEDVQMRSDWLI---PICSGSERLR-- 196
           R F ++ E L+WASP       + FNY A+K AN   QMR  W I   P   G + +   
Sbjct: 145 RFFTHSTEILLWASPMKARPLAHRFNYRAMKTANGGKQMRDLWEIADRPAPGGDQVVWSV 204

Query: 197 -----NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
                 +     HPTQKP ALL R+L +S  PGD++LDPF GS T+G  A +    F+G+
Sbjct: 205 PTPGPREKVHGRHPTQKPLALLERVLAASAAPGDLVLDPFSGSATTGVAALRAGCRFLGL 264

Query: 252 EMKQDYIDIATKRIASV 268
           E    Y+D+A +R+ + 
Sbjct: 265 ERDPGYVDLAARRLRAT 281


>gi|291460930|ref|ZP_06025961.2| DNA (cytosine-5-)-methyltransferase [Fusobacterium periodonticum
           ATCC 33693]
 gi|291379913|gb|EFE87431.1| DNA (cytosine-5-)-methyltransferase [Fusobacterium periodonticum
           ATCC 33693]
          Length = 302

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 98/264 (37%), Positives = 148/264 (56%), Gaps = 18/264 (6%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS---- 76
           + II G  IS ++KLP   +DLI ADPPYNL    +    + + +  +  +W+K      
Sbjct: 19  NTIINGECISEMKKLPDSCIDLIIADPPYNLSKGNKWKWDNSTKLKGMGGNWNKVIQEWD 78

Query: 77  --SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
             + ++Y  FT+ WL   +R+LKP G++W+ G+YHNI  I  + Q L   I+N+++W K 
Sbjct: 79  NFTLQSYILFTKEWLSESKRILKPTGSIWIFGTYHNIGIINVVCQLLEIEIINEVIWYKR 138

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV--------QMRSDWLI 186
           N  PN  GRR   +HET++W + + K + Y FNY+  K A+           QMR+ W  
Sbjct: 139 NAFPNLSGRRLTASHETILWCNKNGKKREYFFNYEFSKNADFSYDSLKSIGKQMRTVW-- 196

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            I +  E+     G+  HPTQKP  +L RI+  ++K  DIIL PF G+G+    AK   R
Sbjct: 197 DISNNKEKSELLYGK--HPTQKPIRILKRIIELTSKENDIILAPFSGAGSECVAAKITGR 254

Query: 247 SFIGIEMKQDYIDIATKRIASVQP 270
            +IGIE+   Y DIA  R+A+++ 
Sbjct: 255 KYIGIEINDFYCDIANNRLANIKK 278


>gi|328948545|ref|YP_004365882.1| DNA methylase N-4/N-6 domain protein [Treponema succinifaciens DSM
           2489]
 gi|328448869|gb|AEB14585.1| DNA methylase N-4/N-6 domain protein [Treponema succinifaciens DSM
           2489]
          Length = 292

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 101/259 (38%), Positives = 151/259 (58%), Gaps = 11/259 (4%)

Query: 14  NSIFEWKDK---IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
           +S+++  ++   +++G+ + +L +   K  D+IFADPPY L  NG +       V     
Sbjct: 3   HSLYKSLNRDFTLLQGDCVELLNQFDFK-FDMIFADPPYFLS-NGGISVQSGKQVSVNKG 60

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
            WDK   FE  + F R WL ACR  LK +GT+W+ G+YHNIF +  ML  L+F ILN + 
Sbjct: 61  GWDKSHGFEKDNEFNRKWLSACRSHLKDDGTIWISGTYHNIFSVALMLNELDFRILNCVT 120

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W K+NP PN   R F ++ E ++WA  S K   Y FNY+ +K  N   QMR  W++P  +
Sbjct: 121 WAKTNPPPNLSCRFFTHSTEFILWARKSKKVPHY-FNYELMKEINGGTQMRDLWILPAIA 179

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
             E+   K     HPTQKP  LL+RI+++STK    ILDPF GS T+G  A  L R F+G
Sbjct: 180 KWEKSCGK-----HPTQKPLPLLARIILASTKENVWILDPFTGSSTTGIAASLLNRRFLG 234

Query: 251 IEMKQDYIDIATKRIASVQ 269
           I+ + ++++++  R   ++
Sbjct: 235 IDRETEFLELSKARREEIE 253


>gi|160888276|ref|ZP_02069279.1| hypothetical protein BACUNI_00686 [Bacteroides uniformis ATCC 8492]
 gi|317480155|ref|ZP_07939265.1| DNA methylase [Bacteroides sp. 4_1_36]
 gi|156862222|gb|EDO55653.1| hypothetical protein BACUNI_00686 [Bacteroides uniformis ATCC 8492]
 gi|316903702|gb|EFV25546.1| DNA methylase [Bacteroides sp. 4_1_36]
          Length = 290

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 100/253 (39%), Positives = 146/253 (57%), Gaps = 8/253 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++ G+ I +L++   K  D+IFADPPY L  NG +      +V      WDK  + E  
Sbjct: 13  TLLHGDCIELLKQFSFK-FDMIFADPPYFLS-NGGISVQSGKMVCVDKGEWDKGGTPEYI 70

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D+F RAW+  C+  LK NGT+W+ G+YHNIF I  +L  L F ILN + W K+NP PN  
Sbjct: 71  DSFNRAWISECQNKLKENGTIWISGTYHNIFSIANILTELGFKILNVVTWAKTNPPPNIS 130

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R F ++ E +IWA  S K   Y +NY  +K  N + QM   W +P  +  E+   K   
Sbjct: 131 CRYFTHSTEFIIWARKSAKITHY-YNYSIMKQINSNKQMTDVWQLPAIARWEKSCGK--- 186

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP ++LSRI+++ST+ G  ILDPF GS T+G  A  L R F+GI+ +++Y+ ++
Sbjct: 187 --HPTQKPLSVLSRIILASTRGGAWILDPFTGSSTTGIAANLLGRRFLGIDREEEYLILS 244

Query: 262 TKRIASVQPLGNI 274
             R   ++ +   
Sbjct: 245 KNRKKEIEQIAKF 257


>gi|239998143|ref|ZP_04718067.1| putative modification methylase [Neisseria gonorrhoeae 35/02]
 gi|240015769|ref|ZP_04722309.1| putative modification methylase [Neisseria gonorrhoeae FA6140]
 gi|240079906|ref|ZP_04724449.1| putative modification methylase [Neisseria gonorrhoeae FA19]
 gi|240112113|ref|ZP_04726603.1| putative modification methylase [Neisseria gonorrhoeae MS11]
 gi|240114859|ref|ZP_04728921.1| putative modification methylase [Neisseria gonorrhoeae PID18]
 gi|240117062|ref|ZP_04731124.1| putative modification methylase [Neisseria gonorrhoeae PID1]
 gi|240122700|ref|ZP_04735656.1| putative modification methylase [Neisseria gonorrhoeae PID332]
 gi|260441326|ref|ZP_05795142.1| putative modification methylase [Neisseria gonorrhoeae DGI2]
 gi|268593992|ref|ZP_06128159.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268596046|ref|ZP_06130213.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268547381|gb|EEZ42799.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268549834|gb|EEZ44853.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|317165585|gb|ADV09126.1| putative modification methylase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 225

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 97/231 (41%), Positives = 139/231 (60%), Gaps = 7/231 (3%)

Query: 29  ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
             +LEK P    D+IFADPPY L  +G     +  +V     +WDK     A   F   W
Sbjct: 2   RKILEKHPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGMAADLEFYEEW 60

Query: 89  LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
           L  C  +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP PN   R F ++
Sbjct: 61  LRLCYALLKPNGTIWVCGTFHNIYLIGYLMQTVGYHILNNITWEKPNPPPNLSCRFFTHS 120

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
            ET++WA  + KAK +TF+Y+ +KA N   QM+  W  P  + +E+   K     HPTQK
Sbjct: 121 TETILWAKKNKKAK-HTFHYEMMKAQNNGKQMKCVWTFPPPNKTEKTFGK-----HPTQK 174

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           P +LL R ++S++  GD+I DPF GSGT+G  A K  R F G E+++D+++
Sbjct: 175 PLSLLERCILSASNIGDLIFDPFMGSGTTGVAALKHGRRFCGCELEEDFLN 225


>gi|293397789|ref|ZP_06641995.1| DNA methylase [Neisseria gonorrhoeae F62]
 gi|291611735|gb|EFF40804.1| DNA methylase [Neisseria gonorrhoeae F62]
          Length = 225

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 97/231 (41%), Positives = 138/231 (59%), Gaps = 7/231 (3%)

Query: 29  ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
             +LEK P    D+IFADPPY L  +G     +  +V     +WDK     A   F   W
Sbjct: 2   RKILEKHPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGMAADLEFYEEW 60

Query: 89  LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
           L  C  +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP PN   R F ++
Sbjct: 61  LRLCYALLKPNGTIWVCGTFHNIYLIGYLMQTVGYHILNNITWEKPNPPPNLSCRFFTHS 120

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
            ET++WA  + KAK +TF+Y+ +KA N   QM+  W  P  + +E+   K     HPTQK
Sbjct: 121 TETILWAKKNKKAK-HTFHYEMMKAQNNGKQMKCVWTFPPPNKTEKTFGK-----HPTQK 174

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           P  LL R ++S++  GD+I DPF GSGT+G  A K  R F G E+++D+++
Sbjct: 175 PLPLLERCILSASNIGDLIFDPFMGSGTTGVAALKHGRRFCGCELEEDFLN 225


>gi|294673721|ref|YP_003574337.1| DNA (cytosine-5-)-methyltransferase [Prevotella ruminicola 23]
 gi|294472635|gb|ADE82024.1| DNA (cytosine-5-)-methyltransferase [Prevotella ruminicola 23]
          Length = 414

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 107/289 (37%), Positives = 163/289 (56%), Gaps = 15/289 (5%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            +++G+ +SVL     K  D+IFADPPY L  NG +   +  +V     +WDK  S E  
Sbjct: 16  TLVEGDCVSVLNAFDFK-FDMIFADPPYFLS-NGGISVSNGKVVCVDKGAWDKAPSSEYI 73

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   WL AC+  LK NGT+W+ G++HNIF +   L  L F ILN + W K++P  N  
Sbjct: 74  DEFNHKWLSACKDKLKDNGTIWISGTHHNIFSVAEQLSELGFKILNVVTWNKTDPPDNVS 133

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R F+++ E +IWA  S KA+ + +NY+ ++  N+  QM   W +P  S  E+   K   
Sbjct: 134 HRVFKHSAEYIIWAKKSKKAQ-HRYNYELMRQLNDGKQMTDVWRMPAVSKWEKSCGK--- 189

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP +LL+RI+++STK GD +LDPF GSGT+G  A  L R ++GI++++ ++++A
Sbjct: 190 --HPTQKPLSLLARIIMASTKEGDWVLDPFNGSGTTGVAASLLGRKYLGIDIEKSFLELA 247

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQG 310
            KR   ++        +    +    V FN  ++    QP  +L    G
Sbjct: 248 AKRREELE-----NKEICQAYKEMVLVDFNGAIQAE--QPHHVLVGRIG 289


>gi|325299176|ref|YP_004259093.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides
           salanitronis DSM 18170]
 gi|324318729|gb|ADY36620.1| DNA methylase N-4/N-6 domain protein [Bacteroides salanitronis DSM
           18170]
          Length = 293

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 99/264 (37%), Positives = 141/264 (53%), Gaps = 8/264 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++KG+ I +L     K  D+IFADPPY+L  NG +      +V      WD+   +E  
Sbjct: 14  TLLKGDCIELLHSFDFK-FDMIFADPPYHLS-NGGISVQSGKMVSVNKGDWDRSKGYEED 71

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F R+W+ ACR  LK NGT+W+ G+YHNIF +   L  L F ILN I W K+NP PN  
Sbjct: 72  YLFDRSWIEACRNKLKSNGTIWISGTYHNIFSVARCLTELGFKILNCITWEKTNPPPNLS 131

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            + F ++ E ++WA    K   Y FNY+ +K  N   QMR  W +P     E+   K   
Sbjct: 132 CKYFTHSAEYILWARKEQKVPHY-FNYELMKKINGGTQMRDVWRLPAIVRWEKSCGK--- 187

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP  +LSRI+ +ST P   ILDPF GS T+G  A  L R F+GI+  ++++ ++
Sbjct: 188 --HPTQKPLCVLSRIIQASTLPSAWILDPFTGSSTTGIAANLLGRRFLGIDQNEEFLKMS 245

Query: 262 TKRIASVQPLGNIELTVLTGKRTE 285
             R   +       L +   ++  
Sbjct: 246 KARREEINDTSKRTLYLEKLQKQA 269


>gi|146297739|ref|YP_001181510.1| DNA methylase N-4/N-6 domain-containing protein
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145411315|gb|ABP68319.1| DNA methylase N-4/N-6 domain protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 270

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 93/260 (35%), Positives = 154/260 (59%), Gaps = 17/260 (6%)

Query: 21  DKIIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPD--HSLVDAVTDSWDKFSS 77
           + I+ G+ ++++++ +P++S+DLI+ADPPYNL     + + +        + + WD +  
Sbjct: 4   NTILHGDCVTIMKEHIPSESIDLIYADPPYNLSGRDLILKNNKTGGPFYKMNEEWDSW-D 62

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           ++ Y  FT  WLLA   VLK NG+L++  +YHNI  +  + + + F + N + W K+N M
Sbjct: 63  YDKYCEFTYNWLLASYSVLKSNGSLYISCTYHNIGEVIFLAKKIGFKLNNILTWVKTNAM 122

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN---------EDVQMRSDWL-IP 187
           PN   R F++  E + W    P   G+ F+Y+ +K  N         + +    D+  +P
Sbjct: 123 PNITKRTFKHTTEFVCWFVKGP---GWKFHYNEIKMLNPRKTKDGSIKQMDDFFDFFEMP 179

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           +  G ER+++ +G   HP QKPE LL  I+ +S+  GDI+LDPFFG+GT+G VA+++ R 
Sbjct: 180 LVQGKERIKSDNGRAAHPNQKPEKLLEIIITASSDEGDIVLDPFFGTGTTGVVAERMNRK 239

Query: 248 FIGIEMKQDYIDIATKRIAS 267
           +IGIE+ + YI IA KRI  
Sbjct: 240 WIGIEINETYIKIAKKRIEE 259


>gi|154148672|ref|YP_001406783.1| DNA methylase [Campylobacter hominis ATCC BAA-381]
 gi|153804681|gb|ABS51688.1| DNA methylase [Campylobacter hominis ATCC BAA-381]
          Length = 271

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 99/248 (39%), Positives = 140/248 (56%), Gaps = 8/248 (3%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            + K  +  G++  +L K  +K  DLIFADPPY L  +G L      +V     +WDK  
Sbjct: 7   DDKKFTLYNGDTFEILPKFKSK-FDLIFADPPYFLSNDG-LSIQSGRIVSVNKGNWDKSY 64

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             +  D F   WL   +  L  NG++ + G+YHNIF IG  LQ L+F ILN I W+K+NP
Sbjct: 65  GIDEIDKFNLEWLEMAKNALNDNGSVMISGTYHNIFSIGRALQKLDFKILNIITWQKTNP 124

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
            PNF  R   ++ E +IWA  S K K + FNY+ +K  N++ QM+  W  P  +  E+  
Sbjct: 125 PPNFSCRYLTHSTEQIIWARKSEKHK-HIFNYELMKKINDNKQMKDVWAFPAIAPWEKSC 183

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
            K     HPTQKP  LL R+++ ++     I DPF GS T+G  A  L R+FIGIE +++
Sbjct: 184 GK-----HPTQKPLRLLVRLILMASYENSTICDPFSGSSTTGIAANLLGRNFIGIEKEKE 238

Query: 257 YIDIATKR 264
           +IDI+  R
Sbjct: 239 FIDISLAR 246


>gi|59800480|ref|YP_207192.1| putative modification methylase [Neisseria gonorrhoeae FA 1090]
 gi|59717375|gb|AAW88780.1| putative modification methylase [Neisseria gonorrhoeae FA 1090]
          Length = 225

 Score =  212 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 96/231 (41%), Positives = 137/231 (59%), Gaps = 7/231 (3%)

Query: 29  ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
             +LEK P    D+IFADPPY L  +G     +  +V     +WDK     A   F   W
Sbjct: 2   RKILEKHPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGMAADLEFYEEW 60

Query: 89  LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
           L  C  +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP PN   R F ++
Sbjct: 61  LRLCYALLKPNGTIWVCGTFHNIYLIGYLMQTVGYHILNNITWEKPNPPPNLSCRFFTHS 120

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
            ET++WA  + KAK +TF+Y+ +KA N   QM+  W     + +E+   K     HPTQK
Sbjct: 121 TETILWAKKNKKAK-HTFHYEMMKAQNNGKQMKCVWTFAPPNKTEKTFGK-----HPTQK 174

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           P  LL R ++S++  GD+I DPF GSGT+G  A K  R F G E+++D+++
Sbjct: 175 PLPLLERCILSASNIGDLIFDPFMGSGTTGVAALKHGRRFCGCELEEDFLN 225


>gi|282878857|ref|ZP_06287624.1| DNA (cytosine-5-)-methyltransferase [Prevotella buccalis ATCC
           35310]
 gi|281299065|gb|EFA91467.1| DNA (cytosine-5-)-methyltransferase [Prevotella buccalis ATCC
           35310]
          Length = 295

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 99/248 (39%), Positives = 137/248 (55%), Gaps = 8/248 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            +I+G+ +  L K      D++FADPPY L   G  Y     +V      WDK  + E  
Sbjct: 17  TLIQGDCVETLSKFKFG-FDMVFADPPYFLSGGGISY-QSGKVVCVDKGDWDKPVTSEEL 74

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           DAF   WL A R  +K N T+W+ G++HNIF +   L  L F ILN I W K+NP PN  
Sbjct: 75  DAFNLRWLTAVREHMKDNATIWISGTHHNIFSVQQQLLKLGFKILNIITWAKTNPPPNIS 134

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R F  + E +IWA  SPK   Y FNY  +K  N D QM   W +P     E+   K   
Sbjct: 135 CRYFTFSTEFIIWARKSPKVPHY-FNYALMKKLNGDKQMTDVWQLPSIGKWEKSCGK--- 190

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP  +L+RI+ +S++P   ILDPF GSGT+G  A  L R+++G+E  +D++ ++
Sbjct: 191 --HPTQKPLGVLARIIQASSEPNSWILDPFSGSGTTGIAANLLGRNYLGLEKDKDFLLMS 248

Query: 262 TKRIASVQ 269
            KR   ++
Sbjct: 249 KKRREELE 256


>gi|288929718|ref|ZP_06423561.1| DNA (cytosine-5-)-methyltransferase [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288328819|gb|EFC67407.1| DNA (cytosine-5-)-methyltransferase [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 301

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 99/247 (40%), Positives = 138/247 (55%), Gaps = 8/247 (3%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +++GN I +L +   K  + IFADPPY L  NG +      +V      WDK    +  +
Sbjct: 15  LLQGNCIELLGQFDFK-FNTIFADPPYFLS-NGGISCQSGEVVSVNKGDWDKSHGADEDN 72

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R WL  CR  L  NGT+WV G+YHNIF +   L  L + ILN I W K+NP PN   
Sbjct: 73  LFNRRWLEVCRDKLADNGTIWVSGTYHNIFSVANCLAELGYKILNVITWAKTNPPPNISC 132

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ E +IWA  SPK   Y FNY  +K  N++ QM   W +P  +  E+   K    
Sbjct: 133 RYFTHSSEFVIWARKSPKVPHY-FNYQLMKEMNDNKQMTDVWHLPAIAPWEKTCTK---- 187

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKP  LL+RI+++ST+P D +LDPF GS T+G  A    R + GIE +  +++I+ 
Sbjct: 188 -HPTQKPLGLLTRIILASTRPNDWVLDPFAGSSTTGIAANLFGRRYFGIEQEHHFLEISK 246

Query: 263 KRIASVQ 269
            R   ++
Sbjct: 247 ARHMEIE 253


>gi|315639073|ref|ZP_07894241.1| modification methylase BabI [Campylobacter upsaliensis JV21]
 gi|315480849|gb|EFU71485.1| modification methylase BabI [Campylobacter upsaliensis JV21]
          Length = 221

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 83/206 (40%), Positives = 125/206 (60%), Gaps = 1/206 (0%)

Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK 222
            +TFNY  +K  N + Q +S W I IC G+ERL++K+G+K H TQKPEALL ++++SSTK
Sbjct: 10  KFTFNYKTMKFLNHNKQEKSIWNIGICIGNERLKDKNGKKAHSTQKPEALLEKVILSSTK 69

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
            G ++LDPFFG+GT+GAVAK+L R FIGIE  ++Y+ IA  RI  V  + + ELT    +
Sbjct: 70  NGALVLDPFFGTGTTGAVAKRLGRHFIGIEQDENYVKIAKARIEQV-CVEDNELTRNELE 128

Query: 283 RTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSE 342
              P+V+   L+  G ++  +   +   N    +  +  +    E+ SIH++ AK     
Sbjct: 129 IKPPKVSLEKLLNAGFLKENERFYDKNQNFICYLVHNNKVSDNKEILSIHKMAAKYLNKA 188

Query: 343 TCNGWNFWYFEKLGELHSINTLRILV 368
             NGW+++Y  K  +L SI+ LR   
Sbjct: 189 NHNGWSYFYILKDEKLISIDALRYAY 214


>gi|108805939|ref|YP_645876.1| DNA methylase N-4/N-6 [Rubrobacter xylanophilus DSM 9941]
 gi|108767182|gb|ABG06064.1| DNA methylase N-4/N-6 [Rubrobacter xylanophilus DSM 9941]
          Length = 266

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 94/246 (38%), Positives = 139/246 (56%), Gaps = 9/246 (3%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +   + + ++  +P   VD IFADPPY L     +      L       WD+        
Sbjct: 16  VYLADCVELMRLMPPGGVDAIFADPPYRLSGG-GVTVRGGRLAPVDKGEWDRPLGHRGNH 74

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   WL   RRVL+P G++WV G++H IF +G  LQ+L F ++N +VW K +P PN   
Sbjct: 75  EFNLRWLREARRVLRPGGSIWVSGTHHIIFSLGFALQSLGFRLINSVVWEKPDPPPNALR 134

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
             F +AHETLIWAS     +G+TFN+D L   +   Q+ S W +P    +ERL       
Sbjct: 135 TAFTHAHETLIWASKG---RGHTFNHDLLNGPDPTSQLSSVWRMPPPPSAERLHG----- 186

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKP  L+ R L++ST+ G+++ DPF GSGT+   AK+L R F+G E++++Y ++A 
Sbjct: 187 YHPTQKPLRLVRRALLASTREGELVFDPFTGSGTTAVAAKELGRFFVGAELEREYAELAG 246

Query: 263 KRIASV 268
           +RI + 
Sbjct: 247 RRIRAA 252


>gi|256820978|ref|YP_003142257.1| DNA methylase N-4/N-6 domain-containing protein [Capnocytophaga
           ochracea DSM 7271]
 gi|256582561|gb|ACU93696.1| DNA methylase N-4/N-6 domain protein [Capnocytophaga ochracea DSM
           7271]
          Length = 265

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 100/259 (38%), Positives = 147/259 (56%), Gaps = 11/259 (4%)

Query: 14  NSIFEWKDK---IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
           N  F+ +DK   ++ G+++ +L +      D++FADPPY L  NG L   +  +V     
Sbjct: 3   NLYFKSQDKSFYLLHGDTMELLPQFH-HKFDMVFADPPYFLS-NGGLTVNNGEIVSVNKG 60

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
            WDK       + F R WL   R V+K + T+W+ G+ HNIF IG +L  L F ILN I 
Sbjct: 61  DWDKSKGIVFVNDFNRQWLTLVREVMKEDATIWISGTMHNIFSIGQILTELGFKILNIIT 120

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W K+NP PNF  R F ++ E +IWA    K   Y FNY  +K  N + QM+  W  P  +
Sbjct: 121 WEKTNPPPNFSCRYFTHSTEQIIWARKEEKTPHY-FNYKLMKELNGNKQMKDVWRFPAIA 179

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
             E+   K     HPTQKP ++L+R++++STKP   ILDPF GS T+G  A  L R F+G
Sbjct: 180 PWEKTCGK-----HPTQKPLSVLTRLILASTKPNAWILDPFTGSSTTGIAANLLGRKFVG 234

Query: 251 IEMKQDYIDIATKRIASVQ 269
           I+ +QD+++++  R   ++
Sbjct: 235 IDKEQDFLELSKLRKLEIE 253


>gi|57242503|ref|ZP_00370441.1| adenine specific DNA methyltransferase (HINFIM) [Campylobacter
           upsaliensis RM3195]
 gi|57016788|gb|EAL53571.1| adenine specific DNA methyltransferase (HINFIM) [Campylobacter
           upsaliensis RM3195]
          Length = 221

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 82/206 (39%), Positives = 124/206 (60%), Gaps = 1/206 (0%)

Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK 222
            +TFNY  +K  N + Q +S W I IC G+ERL++K+G+K H TQKPEALL ++++SSTK
Sbjct: 10  KFTFNYKTMKFLNHNKQEKSIWNIGICIGNERLKDKNGKKAHSTQKPEALLEKVILSSTK 69

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
              ++LDPFFG+GT+GAVAK+L R FIGIE  ++Y+ IA  RI  V  + + ELT    +
Sbjct: 70  KDALVLDPFFGTGTTGAVAKRLGRHFIGIEQDENYVKIAKARIKQV-CVEDNELTRNELE 128

Query: 283 RTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSE 342
              P+V+   L+  G ++  +   +   N    +  +  +    E+ SIH++ AK     
Sbjct: 129 IKPPKVSLEKLLNAGFLKENERFYDKNQNFICYLVHNNKVSDNKEILSIHKMAAKYLNKA 188

Query: 343 TCNGWNFWYFEKLGELHSINTLRILV 368
             NGW+++Y  K  +L SI+ LR   
Sbjct: 189 NYNGWSYFYILKDEKLISIDALRYAY 214


>gi|313207303|ref|YP_004046480.1| DNA methylase n-4/n-6 domain protein [Riemerella anatipestifer DSM
           15868]
 gi|312446619|gb|ADQ82974.1| DNA methylase N-4/N-6 domain protein [Riemerella anatipestifer DSM
           15868]
 gi|315022082|gb|EFT35112.1| DNA methylase N-4/N-6 domain protein [Riemerella anatipestifer
           RA-YM]
 gi|325335248|gb|ADZ11522.1| DNA modification methylase [Riemerella anatipestifer RA-GD]
          Length = 299

 Score =  209 bits (531), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 99/290 (34%), Positives = 151/290 (52%), Gaps = 9/290 (3%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++ G+++ +L K      D++FADPPY L  NG L   +  +V      WDK   FE  +
Sbjct: 15  LLHGDTMELLPKFE-HKFDMVFADPPYFLSNNG-LSIQNGKIVSVNKGKWDKSEGFEFIN 72

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R WL   R  +K + T+W+ G+ HNIF +G +L  L F ILN + W K+NP PNF  
Sbjct: 73  DFNRKWLSLVREKMKGDATIWISGTMHNIFSVGQILTELGFKILNIVTWEKTNPPPNFSC 132

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F  + E +IWA  + K   Y FNY  +K  N + QM+  W +P  +  E+   K    
Sbjct: 133 RYFTYSTEQIIWARKTEKVPHY-FNYKLMKQLNGNRQMKDVWKLPAIAPWEKSCGK---- 187

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKP ++L+R++++STKP   ILDP  GS T+G  A    R F+GI+ +++++ I+ 
Sbjct: 188 -HPTQKPLSVLTRLILASTKPNAWILDPLAGSSTTGIAANLANRRFLGIDQEEEFLTISK 246

Query: 263 KRIASVQ-PLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
            R   ++ P  ++      G   + +     LVE    +    L      
Sbjct: 247 NRKLEIENPKISVTYRQKMGGFNDEKELELFLVEEPRTEYKNELKLENKR 296


>gi|153951969|ref|YP_001398881.1| DNA methylase [Campylobacter jejuni subsp. doylei 269.97]
 gi|152939415|gb|ABS44156.1| DNA methylase [Campylobacter jejuni subsp. doylei 269.97]
          Length = 282

 Score =  209 bits (531), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 99/259 (38%), Positives = 143/259 (55%), Gaps = 11/259 (4%)

Query: 14  NSIFEWKDK---IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
             IF  KD+   + + +   +L K   K  DLIFADPPY L  +G L   +  +V     
Sbjct: 6   KPIFTSKDENFILYQNDCNKLLPKFE-KQFDLIFADPPYFLSNDG-LSIQNGKIVSVNKG 63

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
            WDK +  E  D F   WL   +  L+  G++ + G+YHNIF +G +LQ L+F ILN I 
Sbjct: 64  DWDKGNDIEKIDEFNLKWLSNAKIALQDTGSILICGTYHNIFSLGRILQKLDFKILNIIT 123

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ L+  N + QMR  W     +
Sbjct: 124 WQKTNPPPNFSCRYLTHSTEQIIWARKSHKYK-HIFNYEILRFLNSNKQMRDVWTFNAIA 182

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
             E+   K     HPTQKP ALL+R+++ ++    +I DPF GS T+G  A  L R FIG
Sbjct: 183 PWEKTNGK-----HPTQKPLALLTRLILMASNEDCLICDPFSGSSTTGIGANLLNRKFIG 237

Query: 251 IEMKQDYIDIATKRIASVQ 269
            E + ++I+I+  R   ++
Sbjct: 238 FEKESEFIEISIARKKELE 256


>gi|237753354|ref|ZP_04583834.1| DNA methylase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375621|gb|EEO25712.1| DNA methylase [Helicobacter winghamensis ATCC BAA-430]
          Length = 284

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 102/247 (41%), Positives = 142/247 (57%), Gaps = 8/247 (3%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + K  + +G+  ++L ++  +S D+IFADPPY L  NG L      +V      WD+  +
Sbjct: 16  DSKFSLYQGDCNALLPQMK-ESFDVIFADPPYFLS-NGGLSIQSGKIVSVNKGEWDRGEN 73

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            +  D F   W+   +  LKP G++ + G+YHNIF +G  LQ L+F ILN I W+K+NP 
Sbjct: 74  IDEIDRFNTEWIANAKIALKPTGSIMISGTYHNIFSLGRALQKLDFKILNIITWQKTNPP 133

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  P  +  E+   
Sbjct: 134 PNFSCRYLTHSTEQIIWARKSHKHK-HIFNYEILKKLNNDKQMRDVWSFPAIAPWEKTFG 192

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K     HPTQKP ALL R+L+ ++    II DPF GS T+G  A  L R FIGIE +  +
Sbjct: 193 K-----HPTQKPLALLVRLLLMASNEDSIICDPFSGSSTTGIAANLLHRQFIGIERESSF 247

Query: 258 IDIATKR 264
           ID++ KR
Sbjct: 248 IDLSIKR 254


>gi|68480349|gb|AAY97905.1| Mva1269I methyltransferase [Kocuria varians]
          Length = 626

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 96/265 (36%), Positives = 140/265 (52%), Gaps = 19/265 (7%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS--- 76
           K++I   + I  ++ L   S+D+I ADPPYNL   G     +   +      WDK     
Sbjct: 4   KNEIYNMDCIEGMKLLKENSIDIIIADPPYNLSKGGNWSWKNEDNLKGFGGKWDKVMQNW 63

Query: 77  ---SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                  Y  FT  WL   +R+LKP G+LWV G+YHNI  I   +Q L   ++N+++W K
Sbjct: 64  DNMPISDYFTFTLKWLSEAKRILKPTGSLWVFGTYHNIGIINFAMQILEIEMINEVIWFK 123

Query: 134 SNPMPNFRGRRFQNAHETLIW-ASPSPKAKGYTFNYDALKAANED--------VQMRSDW 184
            N  PN  GRR   +HET+IW  S + K + Y FNY+  K  + D         QMR+ W
Sbjct: 124 RNSFPNLSGRRLTASHETIIWAHSGTAKDREYFFNYEMSKNHDYDSDLIKQPLKQMRTVW 183

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
            IP     E L        HPTQK E ++ R++  S K GD++L PF G+GT   VAKKL
Sbjct: 184 DIPNNKKKEELLY----GKHPTQKVEKVIDRMIRISAKEGDLLLSPFCGAGTECVVAKKL 239

Query: 245 RRSFIGIEMKQDYIDIATKRIASVQ 269
              +I  E++++Y++++  R+ + Q
Sbjct: 240 GLDYIAFELEEEYVNLSKTRLLNTQ 264


>gi|213963061|ref|ZP_03391320.1| DNA methylase [Capnocytophaga sputigena Capno]
 gi|213954402|gb|EEB65725.1| DNA methylase [Capnocytophaga sputigena Capno]
          Length = 265

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 95/258 (36%), Positives = 146/258 (56%), Gaps = 11/258 (4%)

Query: 15  SIFEWKDK---IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
             F+ +DK   ++ G+++ +L +   +  D++FADPPY L  NG L   +  +V      
Sbjct: 4   PYFKSQDKSFYLLHGDTMELLPQFH-RKFDMVFADPPYFLS-NGGLTVNNGEIVSVNKGD 61

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           WDK       + F R WL   R V+K   T+W+ G+ HNIF +G +L  L F ILN I W
Sbjct: 62  WDKSKGIAFVNDFNRQWLTLVREVMKEEATIWISGTMHNIFSVGQILTELGFKILNIITW 121

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
            K+NP PNF  R F ++ E ++WA    K   Y FNY+ +K  N + QM+  W  P  + 
Sbjct: 122 EKTNPPPNFSCRYFTHSTEHIVWARKEEKTPHY-FNYELMKELNGNKQMKDVWRFPAIAP 180

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
            E+   K     HPTQKP ++L+R++++ST+P   ILDPF GS T+G  A    R F+GI
Sbjct: 181 WEKSCGK-----HPTQKPLSVLTRLILASTQPNTWILDPFTGSSTTGIAANLQGRKFVGI 235

Query: 252 EMKQDYIDIATKRIASVQ 269
           + +Q++++++  R   +Q
Sbjct: 236 DKEQEFLELSKNRKLEIQ 253


>gi|260577363|ref|ZP_05845334.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sp. SW2]
 gi|259020436|gb|EEW23761.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sp. SW2]
          Length = 310

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 93/259 (35%), Positives = 134/259 (51%), Gaps = 20/259 (7%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD------AVTDSWDKF 75
           ++  GN I ++ +LP +SVD+I ADPPYN     +L     +L         +   WD  
Sbjct: 54  RVYHGNFIEMVSQLPDQSVDIIIADPPYNASKGNELTMQYGTLPGFGGSWRKIAQVWDDM 113

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            S   Y AFT +WL   RRVLKP G++WV G+YH+       +Q L   I+N+IVW K N
Sbjct: 114 -SLHDYLAFTLSWLTEARRVLKPTGSMWVHGTYHSAGVTNVAMQMLEVEIINEIVWYKRN 172

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA--------ANEDVQMRSDWLIP 187
             PN  GRR   +HET++WA      + Y FNY+  K          +   QMR+ W +P
Sbjct: 173 SFPNLAGRRLTASHETILWAHRGG-KRAYRFNYEHSKFGDFSDDDLKSPGKQMRTVWDLP 231

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
               + + R++     HP QKP  L  R +  S  PGD+ L PF GSG+    A++    
Sbjct: 232 ----NNKPRHEQAHGKHPAQKPVRLAKRFIELSAGPGDLCLVPFAGSGSECVAAQEAGLH 287

Query: 248 FIGIEMKQDYIDIATKRIA 266
           FIG +  + Y++IA  R++
Sbjct: 288 FIGFDTDESYVEIARARLS 306


>gi|330995399|ref|ZP_08319309.1| DNA (cytosine-5-)-methyltransferase [Paraprevotella xylaniphila YIT
           11841]
 gi|329575894|gb|EGG57418.1| DNA (cytosine-5-)-methyltransferase [Paraprevotella xylaniphila YIT
           11841]
          Length = 289

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 97/254 (38%), Positives = 133/254 (52%), Gaps = 8/254 (3%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
            G+   +L+    K  D+IFADPPY L  NG +      +V      WDK  S E   AF
Sbjct: 17  HGDCFKLLKDFDFK-FDMIFADPPYFLS-NGGISLQRGKVVCVDKGDWDKGKSQEDMLAF 74

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
              WL  CR  LK NGT+W+ G+YHNIF +   L  L + ILN + W+K+NP  N   R 
Sbjct: 75  NMEWLRLCRDKLKDNGTIWISGTYHNIFSVANCLTELGYKILNVVTWQKTNPPANISCRF 134

Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
           F  + E +IWA    +   + FNYD +K  N+  QM   W +P     E+   K     H
Sbjct: 135 FTYSTEFVIWARKM-QKIPHKFNYDLMKELNDGKQMTDVWRMPAIGRWEKTCGK-----H 188

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PTQKP  LL R++++ST  GD ILDPF GS T+G  A    R F G+E ++D+  ++  R
Sbjct: 189 PTQKPLRLLVRMILASTNQGDWILDPFSGSSTTGIAANLCGRRFAGLEQEEDFCKLSKAR 248

Query: 265 IASVQPLGNIELTV 278
              ++ L N    +
Sbjct: 249 REEIESLENYANLL 262


>gi|322378612|ref|ZP_08053050.1| type I restriction enzyme M protein (hsdM) [Helicobacter suis HS1]
 gi|322380096|ref|ZP_08054350.1| type I restriction enzyme M [Helicobacter suis HS5]
 gi|321147466|gb|EFX42112.1| type I restriction enzyme M [Helicobacter suis HS5]
 gi|321148972|gb|EFX43434.1| type I restriction enzyme M protein (hsdM) [Helicobacter suis HS1]
          Length = 274

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 99/264 (37%), Positives = 144/264 (54%), Gaps = 11/264 (4%)

Query: 9   INENQNSIF---EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV 65
           +N     IF   ++K  +   +   +L  +P +  DLIFADPPY L  NG L      +V
Sbjct: 1   MNSKPKPIFVSEDFKFTLYHNDCKEILAHMP-ECFDLIFADPPYFLSNNG-LTIESGQIV 58

Query: 66  DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
                SWD+    +   AF   WL   +  LKP+G++ +  + HN+F +G  LQ L F +
Sbjct: 59  SVNKGSWDRLEGIDQIHAFNLEWLRLAKEALKPSGSILISATQHNLFSLGLALQTLGFKL 118

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
           LN I W KSNP PNF  R   +A E ++WA  SP    + FNY+ +KA N+  QMR  W 
Sbjct: 119 LNTITWHKSNPPPNFSCRTLVHASEQILWARKSP-KHAHIFNYERMKALNQGKQMRDVWT 177

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P  +  E+   K     HPTQKP  LL R+L+ ++    +I DPF GS ++G  A  L 
Sbjct: 178 LPSIASFEKKCGK-----HPTQKPLNLLLRLLLMASNKESLIGDPFSGSSSTGIAANLLG 232

Query: 246 RSFIGIEMKQDYIDIATKRIASVQ 269
           RSF+G+E +QD+I ++ KR   ++
Sbjct: 233 RSFVGMEKEQDFIKLSIKRRQELE 256


>gi|109948003|ref|YP_665231.1| DNA methyltransferase [Helicobacter acinonychis str. Sheeba]
 gi|109715224|emb|CAK00232.1| DNA methyltransferase [Helicobacter acinonychis str. Sheeba]
          Length = 278

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 107/284 (37%), Positives = 151/284 (53%), Gaps = 13/284 (4%)

Query: 10  NENQNSIFEWKDKI---IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           N+  +S+FE  DK+    +G+   VL      + DLIFADPPY L  +G L      +V 
Sbjct: 5   NQTPHSVFESTDKLFTLYQGDCNEVLSLFE-NTFDLIFADPPYFLSNDG-LSIQSGKIVS 62

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                WDK       D F   W+ + ++ LK  G+L + G+YHN+F +G +LQ L+F IL
Sbjct: 63  VNKGDWDKEERINDIDEFNYQWINSAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKIL 122

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  
Sbjct: 123 NLITWQKTNPPPNFSCRYLTHSAEQIIWARKSHKHK-HVFNYEVLKKINSDKQMRDVWSF 181

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R
Sbjct: 182 PAIAPWEKTNGK-----HPTQKPLALLVRLLLMASNENSLIGDPFSGSSTTGIAANLLKR 236

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAF 290
            FIGIE + ++I ++  R   ++     +      K   P   F
Sbjct: 237 KFIGIEKESEFIKMSINR--KMELDARYKEIRSKIKDLNPIDPF 278


>gi|315224178|ref|ZP_07866018.1| DNA (cytosine-5-)-methyltransferase [Capnocytophaga ochracea F0287]
 gi|314945911|gb|EFS97920.1| DNA (cytosine-5-)-methyltransferase [Capnocytophaga ochracea F0287]
          Length = 265

 Score =  205 bits (523), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 96/259 (37%), Positives = 145/259 (55%), Gaps = 11/259 (4%)

Query: 15  SIFEWKDK---IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
             F+ +DK   ++ G+++ +L +   +  D++FADPPY L  NG L   +  +V      
Sbjct: 4   PYFKSQDKSFYLLHGDTMELLPQFH-RKFDMVFADPPYFLS-NGGLTVNNGEIVSVNKGD 61

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           WDK       + F R WL   R V+K   T+W+ G+ HNIF IG +L  L   ILN I W
Sbjct: 62  WDKSKGIAFVNDFNRQWLTLVREVMKEEATIWISGTMHNIFSIGQILTELGLKILNIITW 121

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
            K+NP PNF  R F ++ E +IWA    K   Y FNY+ +K  N + QM+  W  P  + 
Sbjct: 122 EKTNPPPNFSCRYFTHSTEQIIWARKEEKTPHY-FNYELMKELNGNKQMKDVWRFPAIAP 180

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
            E+   K     HPTQKP ++L+R++++STKP   ILDPF GS T+G  A    R F+GI
Sbjct: 181 WEKSCGK-----HPTQKPLSVLTRLILASTKPDAWILDPFTGSSTTGIAANLQGRKFVGI 235

Query: 252 EMKQDYIDIATKRIASVQP 270
           + ++D+++++  R   ++ 
Sbjct: 236 DREKDFLELSKLRKLEIEK 254


>gi|254457477|ref|ZP_05070905.1| DNA methylase [Campylobacterales bacterium GD 1]
 gi|207086269|gb|EDZ63553.1| DNA methylase [Campylobacterales bacterium GD 1]
          Length = 258

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 108/259 (41%), Positives = 148/259 (57%), Gaps = 17/259 (6%)

Query: 21  DKIIKGNSISVL---EKLPAKSVDLIFADPPYNLQLN--GQLYRPDHSLVDAVTDSWDKF 75
           D++   + I  L   +K+  +SV LIFADPPYNL  N               V + WDK 
Sbjct: 4   DQVYNADCIKTLNDTKKIAKESVQLIFADPPYNLSGNALKSTGSKTGGDFTMVNEDWDKM 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
              E +  FT  W+ +C+ +LKPNG++++  SYHN+      L+   F I N I W KSN
Sbjct: 64  EEQE-FITFTNEWVKSCKDILKPNGSIFIACSYHNMGESIMSLKLNGFDIKNIITWNKSN 122

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE-------DVQMRSDWLIPI 188
            MPN   R   +  E +IWA      KG+ FNYD LK  N        D QMR  W +P+
Sbjct: 123 AMPNLTRRVLTHTTEFVIWAVKG---KGWIFNYDILKELNPEKRQDGTDKQMRDIWTLPL 179

Query: 189 CSGSERLRNKDGEK-LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           C G ERLR+ DG+K LHPTQKPE LL RI++  +  GD++LDPF GSGT+  +AKK +R+
Sbjct: 180 CQGKERLRDADGKKALHPTQKPEELLKRIILGFSNEGDLVLDPFGGSGTTPFIAKKYKRN 239

Query: 248 FIGIEMKQDYIDIATKRIA 266
           +I IE ++ Y D   +R++
Sbjct: 240 YIAIEREKKYADAIRQRVS 258


>gi|317179900|dbj|BAJ57686.1| Type II restriction enzyme M protein [Helicobacter pylori F32]
          Length = 277

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 106/258 (41%), Positives = 145/258 (56%), Gaps = 11/258 (4%)

Query: 10  NENQNSIFEWKDKI---IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           NE    IF+ +D++    +G+   VL +      DLIFADPPY L  +G L      +V 
Sbjct: 7   NEIARPIFKSQDQLFTLYQGDCNEVLPQFE-NQFDLIFADPPYFLSNDG-LSIQSGKIVS 64

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                WDK  S    D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F IL
Sbjct: 65  VNKGDWDKEESVNDIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRVLQKLDFKIL 124

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  
Sbjct: 125 NLITWQKTNPPPNFSCRYLTHSAEQIIWARKSHKHK-HVFNYEVLKKINNDKQMRDVWSF 183

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E++  K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R
Sbjct: 184 PAIAPWEKVNGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKR 238

Query: 247 SFIGIEMKQDYIDIATKR 264
            FIGIE + ++I I+  R
Sbjct: 239 QFIGIEKESEFIQISMDR 256


>gi|297379313|gb|ADI34200.1| Modification methylase [Helicobacter pylori v225d]
          Length = 277

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 105/258 (40%), Positives = 144/258 (55%), Gaps = 11/258 (4%)

Query: 10  NENQNSIFEWKDKI---IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           NE    IF+ +D++    +G+   VL +      DLIFADPPY L  +G L      +V 
Sbjct: 7   NEIARPIFKSQDQLFTLYQGDCNEVLPQFE-NQFDLIFADPPYFLSNDG-LSIQSGKIVS 64

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                WDK  S    D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F IL
Sbjct: 65  VNKGDWDKEESVNDIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKIL 124

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  
Sbjct: 125 NLITWQKTNPPPNFSCRYLTHSAEQIIWARKSHKHK-HVFNYEVLKKINNDKQMRDVWSF 183

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R
Sbjct: 184 PAIAPWEKTNGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKR 238

Query: 247 SFIGIEMKQDYIDIATKR 264
            FIGIE + +++ I+  R
Sbjct: 239 QFIGIEKESEFVKISIDR 256


>gi|188526898|ref|YP_001909585.1| type II restriction enzyme M protein (hsdM) [Helicobacter pylori
           Shi470]
 gi|188143138|gb|ACD47555.1| type II restriction enzyme M protein (hsdM) [Helicobacter pylori
           Shi470]
          Length = 277

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 105/258 (40%), Positives = 143/258 (55%), Gaps = 11/258 (4%)

Query: 10  NENQNSIFEWKDKI---IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           NE    IF+ +D++    +G+   VL +      DLIFADPPY L  +G L      +V 
Sbjct: 7   NEIARPIFKSQDQLFTLYQGDCNEVLPQFE-NQFDLIFADPPYFLSNDG-LSIQSGKIVS 64

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                WDK  S    D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F IL
Sbjct: 65  VNKGDWDKEESVNDIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKIL 124

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  
Sbjct: 125 NLITWQKTNPPPNFSCRYLTHSAEQIIWARKSHKHK-HVFNYEVLKKINNDKQMRDVWSF 183

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L R
Sbjct: 184 PAIAPWEKANGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLER 238

Query: 247 SFIGIEMKQDYIDIATKR 264
            FIGIE + +++ I+  R
Sbjct: 239 QFIGIEKESEFVKISMDR 256


>gi|237749758|ref|ZP_04580238.1| DNA methylase [Helicobacter bilis ATCC 43879]
 gi|229374623|gb|EEO25014.1| DNA methylase [Helicobacter bilis ATCC 43879]
          Length = 284

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 99/247 (40%), Positives = 142/247 (57%), Gaps = 8/247 (3%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + K  + +G+  ++L ++  +S D+IFADPPY L  +G L      +V      WD+  +
Sbjct: 16  DSKFSLYQGDCNALLPQMK-ESFDVIFADPPYFLSNDG-LSIQSGKIVSVNKGEWDRGEN 73

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            +  D F   W+   +  LKP G++ + G+YHNIF +G  LQ L+F ILN I W+K+NP 
Sbjct: 74  IDEIDRFNMEWIANAKIALKPTGSIMISGTYHNIFSLGRALQKLDFKILNIITWQKTNPP 133

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  P  +  E+   
Sbjct: 134 PNFSCRYLTHSTEQIIWARKSHKYK-HIFNYEILKKLNNDKQMRDVWSFPAIAPWEKTFG 192

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K     HPTQKP ALL R+L+ ++    II DPF GS T+G  A  L R F+GIE +  +
Sbjct: 193 K-----HPTQKPLALLVRLLLMASNDDSIICDPFSGSSTTGIAANLLGRQFVGIERESSF 247

Query: 258 IDIATKR 264
           I+++ KR
Sbjct: 248 INLSIKR 254


>gi|308062955|gb|ADO04842.1| type II restriction enzyme M protein (hsdM) [Helicobacter pylori
           Sat464]
          Length = 276

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 105/258 (40%), Positives = 144/258 (55%), Gaps = 11/258 (4%)

Query: 10  NENQNSIFEWKDKI---IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           NE    IF+ +D++    +G+   VL +      DLIFADPPY L  +G L      +V 
Sbjct: 7   NEIARPIFKSQDQLFTLYQGDCNEVLPQFE-NQFDLIFADPPYFLSNDG-LSIQSGKIVS 64

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                WDK  S    D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F IL
Sbjct: 65  VNKGDWDKEESVNDIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKIL 124

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  
Sbjct: 125 NLITWQKTNPPPNFSCRYLTHSAEQIIWARKSHKHK-HVFNYEILKKINNDKQMRDVWSF 183

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R
Sbjct: 184 PAIAPWEKANGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKR 238

Query: 247 SFIGIEMKQDYIDIATKR 264
            FIGIE + +++ I+  R
Sbjct: 239 EFIGIEKESEFVKISMDR 256


>gi|160884890|ref|ZP_02065893.1| hypothetical protein BACOVA_02880 [Bacteroides ovatus ATCC 8483]
 gi|237716944|ref|ZP_04547425.1| type II restriction enzyme M protein [Bacteroides sp. D1]
 gi|262405713|ref|ZP_06082263.1| DNA methylase [Bacteroides sp. 2_1_22]
 gi|294643396|ref|ZP_06721215.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CC 2a]
 gi|294810621|ref|ZP_06769271.1| DNA (cytosine-5-)-methyltransferase [Bacteroides xylanisolvens SD
           CC 1b]
 gi|156109925|gb|EDO11670.1| hypothetical protein BACOVA_02880 [Bacteroides ovatus ATCC 8483]
 gi|229442927|gb|EEO48718.1| type II restriction enzyme M protein [Bacteroides sp. D1]
 gi|262356588|gb|EEZ05678.1| DNA methylase [Bacteroides sp. 2_1_22]
 gi|292641274|gb|EFF59473.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CC 2a]
 gi|294442163|gb|EFG10980.1| DNA (cytosine-5-)-methyltransferase [Bacteroides xylanisolvens SD
           CC 1b]
 gi|295085863|emb|CBK67386.1| DNA modification methylase [Bacteroides xylanisolvens XB1A]
          Length = 279

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 96/243 (39%), Positives = 138/243 (56%), Gaps = 8/243 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++ G+   +L +   +  D+IFADPPY L  NG +      +V      WD+    E+ 
Sbjct: 15  TLLLGDCRQLLSQFDFQ-FDMIFADPPYFLS-NGGISVQSGKIVCVDKGDWDRSFGKESI 72

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   W+  CR  LK NGT+W+ G+YHNIF +   L  L F ILN I W K+NP PN  
Sbjct: 73  DNFNYKWIADCRDKLKDNGTIWISGTYHNIFSVANQLTELGFKILNCITWVKTNPPPNIS 132

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R F  + E +IWA  +     Y +NYD +K +N + QM   W +    G E++  K   
Sbjct: 133 CRYFTYSAEYIIWARKNNNVSHY-YNYDFMKMSNANHQMTDVWNLSAIEGWEKIHGK--- 188

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP  LL+R++ +ST+PG  ILDPF GS T+G  A  L+R F+GI+++Q Y++++
Sbjct: 189 --HPTQKPINLLARVIAASTRPGAWILDPFAGSSTTGVTANLLKRRFLGIDIEQKYLELS 246

Query: 262 TKR 264
             R
Sbjct: 247 ILR 249


>gi|308061386|gb|ADO03274.1| type II restriction enzyme M protein (hsdM) [Helicobacter pylori
           Cuz20]
          Length = 276

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 105/258 (40%), Positives = 144/258 (55%), Gaps = 11/258 (4%)

Query: 10  NENQNSIFEWKDKI---IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           NE    IF+ +D++    +G+   VL +      DLIFADPPY L  +G L      +V 
Sbjct: 7   NEIARPIFKSQDQLFTLYQGDCNEVLPQFE-NQFDLIFADPPYFLSNDG-LSIQSGKIVS 64

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                WDK  S    D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F IL
Sbjct: 65  VNKGDWDKEESVNDIDGFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKIL 124

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  
Sbjct: 125 NLITWQKTNPPPNFSCRYLTHSAEQIIWARKSHKHK-HVFNYEVLKKINNDKQMRDVWSF 183

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E++  K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L R
Sbjct: 184 PAIAPWEKVNGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLER 238

Query: 247 SFIGIEMKQDYIDIATKR 264
            FIGIE + +++ I+  R
Sbjct: 239 QFIGIEKESEFVKISMDR 256


>gi|224585184|ref|YP_002638983.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224469712|gb|ACN47542.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 294

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 92/279 (32%), Positives = 145/279 (51%), Gaps = 33/279 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G++++ L+KLP++S+DLIFADPPYN+  +           D + +SWD+ S    +
Sbjct: 16  KIIHGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDEAS----F 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+    +  C RVLK +GT++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  LAWLYECIDECHRVLKKHGTMYIMNSTENMPYIDLKCRTL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDAL------KAANEDVQMRSDWLIPI------- 188
            + F + +E ++    +P  K YTFN DA+       A    +  R +   P        
Sbjct: 120 KKYFGSMYEPILMMVKNP--KSYTFNRDAILVETTTGAKRALIDYRKNPPQPYNQKKVPG 177

Query: 189 --CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
              S        D  + HPTQKP ALL RI+++S+ P D +LDPF GS T+GAVA +  R
Sbjct: 178 NVWSFPRVRYLMDEYENHPTQKPSALLKRIILASSNPSDTVLDPFAGSFTTGAVAAESGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
            FIGIE+  +Y+ +  +R++        EL  +  ++T+
Sbjct: 238 KFIGIELNNEYVKMGLRRLSVTSHYSENELAKVKKRKTQ 276


>gi|152981599|ref|YP_001354977.1| DNA modification methylase [Janthinobacterium sp. Marseille]
 gi|151281676|gb|ABR90086.1| DNA modification methylase [Janthinobacterium sp. Marseille]
          Length = 273

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 83/288 (28%), Positives = 143/288 (49%), Gaps = 33/288 (11%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           W+D+I   ++++ L ++P  ++DLI ADPPY L   G+ Y  D   +DA           
Sbjct: 4   WRDRIFCEDALAGLARIPDAAIDLIIADPPYGL---GKDYGNDSDKLDA----------- 49

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +AY ++   W+ A    LKPNG+L++  ++     +  ML+     +LN+IVW +  P  
Sbjct: 50  DAYLSWMEQWIDAALPKLKPNGSLYIFLTWRYSPEVFVMLKK-RMTMLNEIVWDRRVPSM 108

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS---------DWL---- 185
               R+F + H+T+ + +    AK Y F+ DA++   +    ++          WL    
Sbjct: 109 GGGTRKFSSVHDTIGFFAK---AKDYYFDLDAVRIPYDAETKKARSRSIFVGAKWLEMGY 165

Query: 186 --IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
               + S S   +       HPTQKP  ++ R+L +S  PG ++LDPF GSGT+ A AK+
Sbjct: 166 NPKDVWSVSRLHKEHRERADHPTQKPLEIVERMLKASCPPGGVVLDPFMGSGTTAAAAKR 225

Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFN 291
             R F+G E+  +Y ++  KR+ +++ +    +    G+   P    N
Sbjct: 226 CGRHFVGFELNAEYCEMIEKRLQALESIPASNIAPAPGQELNPAAEEN 273


>gi|33337327|gb|AAQ13331.1| HpyIIIM protein [Helicobacter pylori]
          Length = 274

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 103/261 (39%), Positives = 145/261 (55%), Gaps = 11/261 (4%)

Query: 7   LAINENQNSIFEWKDKI---IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
           + +      IF+ +D++    +G+   VL +      DLIFADPPY L  +G L      
Sbjct: 1   MEVPYLSRPIFKSQDQLFTLYQGDCNEVLPQFE-NQFDLIFADPPYFLSNDG-LSIQSGK 58

Query: 64  LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
           +V      WDK  S    D F   W+   ++ LK  G+L + G+YHN+F +G +LQ L+F
Sbjct: 59  IVSVNKGDWDKEESVNDIDEFNYQWINNAKKALKNTGSLLISGTYHNLFSLGRILQKLDF 118

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
            ILN I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  
Sbjct: 119 KILNLITWQKTNPPPNFSCRYLTHSAEQIIWARKSHKHK-HVFNYEVLKKINNDKQMRDV 177

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           W  P  +  E++  K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  
Sbjct: 178 WSFPAIAPWEKVNGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANL 232

Query: 244 LRRSFIGIEMKQDYIDIATKR 264
           L+R FIGIE + ++I I+  R
Sbjct: 233 LKRQFIGIEKESEFIQISMDR 253


>gi|134096223|ref|YP_001101298.1| putative DNA-methyltransferase [Herminiimonas arsenicoxydans]
 gi|133740126|emb|CAL63177.1| Putative DNA methylase [Herminiimonas arsenicoxydans]
          Length = 269

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 80/283 (28%), Positives = 139/283 (49%), Gaps = 33/283 (11%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           +W++++   ++++ L ++P  +VDLI ADPPY L  +               +  DK ++
Sbjct: 3   DWRNRVFCEDALAGLARIPDAAVDLIIADPPYGLGKDY-------------GNDSDKLAA 49

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            EAY  +   W+ A    LKPNG+L++  ++     +  ML+     ++N+I+W +  P 
Sbjct: 50  -EAYLQWMEQWIDAALPKLKPNGSLYIFLTWRYSPEVFVMLKK-RMTMINEIIWDRRVPS 107

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS---------DWL--- 185
                RRF + H+T+ + +    AK Y F+ DA++   + V  ++          WL   
Sbjct: 108 MGGSTRRFSSVHDTVGFFA---GAKDYYFDLDAIRVPYDAVTKKARSRSIFVGAKWLELG 164

Query: 186 ---IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
                + S S   R       HPTQKP  ++ R+L +S  P  ++LDPF GSGT+   AK
Sbjct: 165 YNPKDVWSVSRLHREHRERADHPTQKPLEIIERMLKASCPPDGVVLDPFMGSGTTAVAAK 224

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           +  R F+G E+  +Y  +  KR+A++ PL  ++         E
Sbjct: 225 RCGRHFVGFELNAEYCALIEKRLAALVPLETVDAETAGSAIVE 267


>gi|62181894|ref|YP_218311.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62129527|gb|AAX67230.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|322716384|gb|EFZ07955.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 296

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 92/279 (32%), Positives = 145/279 (51%), Gaps = 33/279 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G++++ L+KLP++S+DLIFADPPYN+  +           D + +SWD+ S    +
Sbjct: 18  KIIHGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDEAS----F 63

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+    +  C RVLK +GT++++ S  N+  I    + L F I + IVW   +      
Sbjct: 64  LAWLYECIDECHRVLKKHGTMYIMNSTENMPYIDLKCRTL-FTIKSRIVWSYDSSGVQ-A 121

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDAL------KAANEDVQMRSDWLIPI------- 188
            + F + +E ++    +P  K YTFN DA+       A    +  R +   P        
Sbjct: 122 KKYFGSMYEPILMMVKNP--KSYTFNRDAILVETTTGAKRALIDYRKNPPQPYNQKKVPG 179

Query: 189 --CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
              S        D  + HPTQKP ALL RI+++S+ P D +LDPF GS T+GAVA +  R
Sbjct: 180 NVWSFPRVRYLMDEYENHPTQKPSALLKRIILASSNPSDTVLDPFAGSFTTGAVAAESGR 239

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
            FIGIE+  +Y+ +  +R++        EL  +  ++T+
Sbjct: 240 KFIGIELNNEYVKMGLRRLSVTSHYSENELAKVKKRKTQ 278


>gi|317008767|gb|ADU79347.1| type II restriction enzyme M protein (hsdM) [Helicobacter pylori
           India7]
          Length = 277

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 105/258 (40%), Positives = 145/258 (56%), Gaps = 11/258 (4%)

Query: 10  NENQNSIFEWKDKI---IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           NE    IF+ +D++    +G+   VL +      DLIFADPPY L  +G L      +V 
Sbjct: 7   NETARPIFKSQDQLFTLYQGDCNEVLPQFE-NQFDLIFADPPYFLSNDG-LSIQSGKIVS 64

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                WDK       D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F IL
Sbjct: 65  VNKGDWDKEDGINGIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGCILQKLDFKIL 124

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N+D QMR  W  
Sbjct: 125 NLITWQKTNPPPNFSCRYLTHSAEQIIWARKSRKHK-HVFNYEVLKKINKDKQMRDVWSF 183

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E++  K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R
Sbjct: 184 PAIAPWEKVNGK-----HPTQKPLALLVRLLLMASDKNSLIGDPFSGSSTTGIAANLLKR 238

Query: 247 SFIGIEMKQDYIDIATKR 264
            FIGIE + ++I I+  R
Sbjct: 239 QFIGIEKESEFIKISINR 256


>gi|168262589|ref|ZP_02684562.1| DNA methylase [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|205348404|gb|EDZ35035.1| DNA methylase [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
          Length = 294

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 92/279 (32%), Positives = 144/279 (51%), Gaps = 33/279 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G++++ L+KLP++S+DLIFADPPYN+  +           D + +SWD+ S    +
Sbjct: 16  KIIHGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDETS----F 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+    +  C RVLK +GT++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  LAWLYECIDECHRVLKKHGTMYIMNSTENMPYIDLKCRTL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDAL------KAANEDVQMRSDWLIPI------- 188
            + F + +E ++    +P  K YTFN DA+       A    +  R +   P        
Sbjct: 120 KKYFGSMYEPILMMVKNP--KSYTFNRDAILVETTTGAKRALIDYRKNPPQPYNQKKVPG 177

Query: 189 --CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
              S        D  + HPTQKP ALL RI+++S+ P D +LDPF GS T+GAVA    R
Sbjct: 178 NVWSFPRVRYLMDEYENHPTQKPSALLKRIILASSNPSDTVLDPFAGSFTTGAVAAASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
            FIGIE+  +Y+ +  +R++        EL  +  ++T+
Sbjct: 238 KFIGIELNNEYVKMGLRRLSVTSHYSENELAKVKKRKTQ 276


>gi|317176913|dbj|BAJ54702.1| Type II restriction enzyme M protein [Helicobacter pylori F16]
          Length = 276

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 105/258 (40%), Positives = 145/258 (56%), Gaps = 11/258 (4%)

Query: 10  NENQNSIFEWKDKI---IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           NE    IF+ +D++    +G+   VL +      DLIFADPPY L  +G L   +  +V 
Sbjct: 7   NEIACPIFKSQDQLFTLYQGDCNEVLPQFE-NQFDLIFADPPYFLSNDG-LSIQNGKIVS 64

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                WDK  S    D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F IL
Sbjct: 65  VNKGDWDKEESVNDIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKIL 124

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  
Sbjct: 125 NLITWQKTNPPPNFSCRYLTHSAEQIIWARKSRKHK-HVFNYEVLKKINNDKQMRDVWSF 183

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R
Sbjct: 184 PAIAPWEKTNGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKR 238

Query: 247 SFIGIEMKQDYIDIATKR 264
            FIGIE + +++ I+  R
Sbjct: 239 QFIGIEKESEFVKISMDR 256


>gi|16762145|ref|NP_457762.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|16766681|ref|NP_462296.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29143634|ref|NP_806976.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|161616411|ref|YP_001590376.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167552904|ref|ZP_02346655.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|167993974|ref|ZP_02575067.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168233973|ref|ZP_02659031.1| DNA methylase [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|168239415|ref|ZP_02664473.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168245210|ref|ZP_02670142.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168463376|ref|ZP_02697293.1| DNA methylase [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|168822713|ref|ZP_02834713.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194442303|ref|YP_002042642.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194449918|ref|YP_002047414.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194469895|ref|ZP_03075879.1| DNA methylase [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194736425|ref|YP_002116334.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197251530|ref|YP_002148310.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197265136|ref|ZP_03165210.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|198244548|ref|YP_002217356.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200389115|ref|ZP_03215727.1| DNA methylase [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|204931162|ref|ZP_03221956.1| DNA methylase [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|207858634|ref|YP_002245285.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|213162245|ref|ZP_03347955.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213428297|ref|ZP_03361047.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213649888|ref|ZP_03379941.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213853025|ref|ZP_03382557.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|289824094|ref|ZP_06543691.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25286118|pir||AG0913 probable adenine-specific DNA-modification methylase STY3566
           [imported] - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 gi|16421947|gb|AAL22255.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16504448|emb|CAD07901.1| putative adenine-specific DNA-modification methylase [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29139269|gb|AAO70836.1| putative adenine-specific DNA-modification methylase [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|161365775|gb|ABX69543.1| hypothetical protein SPAB_04220 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194400966|gb|ACF61188.1| DNA methylase [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194408222|gb|ACF68441.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194456259|gb|EDX45098.1| DNA methylase [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194711927|gb|ACF91148.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195633408|gb|EDX51822.1| DNA methylase [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197215233|gb|ACH52630.1| DNA methylase [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197243391|gb|EDY26011.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197287877|gb|EDY27265.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197939064|gb|ACH76397.1| DNA methylase [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|199606213|gb|EDZ04758.1| DNA methylase [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|204319929|gb|EDZ05135.1| DNA methylase [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205322540|gb|EDZ10379.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205328111|gb|EDZ14875.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205332006|gb|EDZ18770.1| DNA methylase [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|205336037|gb|EDZ22801.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205340921|gb|EDZ27685.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|206710437|emb|CAR34795.1| putative adenine-specific DNA-modification methylase [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|261248549|emb|CBG26387.1| putative adenine-specific DNA-modification methylase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267995595|gb|ACY90480.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159935|emb|CBW19454.1| putative adenine-specific DNA-modification methylase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312914414|dbj|BAJ38388.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320087834|emb|CBY97598.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321225192|gb|EFX50251.1| Adenine-specific methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322614527|gb|EFY11457.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618251|gb|EFY15142.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625964|gb|EFY22778.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322626734|gb|EFY23531.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631302|gb|EFY28062.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635431|gb|EFY32145.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322643431|gb|EFY39995.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322647265|gb|EFY43763.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649729|gb|EFY46156.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322655597|gb|EFY51903.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322658373|gb|EFY54638.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322664403|gb|EFY60599.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322667377|gb|EFY63539.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674625|gb|EFY70717.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322675744|gb|EFY71817.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682380|gb|EFY78403.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322684755|gb|EFY80756.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323131748|gb|ADX19178.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323196167|gb|EFZ81327.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323196733|gb|EFZ81878.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204370|gb|EFZ89379.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323207718|gb|EFZ92665.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323209992|gb|EFZ94897.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323214293|gb|EFZ99046.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323219030|gb|EGA03536.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323225048|gb|EGA09301.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230400|gb|EGA14519.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233376|gb|EGA17470.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239413|gb|EGA23463.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323242336|gb|EGA26362.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323247310|gb|EGA31275.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250400|gb|EGA34284.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256848|gb|EGA40563.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323263868|gb|EGA47387.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323264111|gb|EGA47619.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323271630|gb|EGA55049.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326625135|gb|EGE31480.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|332990244|gb|AEF09227.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 294

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 92/279 (32%), Positives = 144/279 (51%), Gaps = 33/279 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G++++ L+KLP++S+DLIFADPPYN+  +           D + +SWD+ S    +
Sbjct: 16  KIIHGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDEAS----F 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+    +  C RVLK +GT++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  LAWLYECIDECHRVLKKHGTMYIMNSTENMPYIDLKCRTL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDAL------KAANEDVQMRSDWLIPI------- 188
            + F + +E ++    +P  K YTFN DA+       A    +  R +   P        
Sbjct: 120 KKYFGSMYEPILMMVKNP--KSYTFNRDAILVETTTGAKRALIDYRKNPPQPYNQKKVPG 177

Query: 189 --CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
              S        D  + HPTQKP ALL RI+++S+ P D +LDPF GS T+GAVA    R
Sbjct: 178 NVWSFPRVRYLMDEYENHPTQKPSALLKRIILASSNPSDTVLDPFAGSFTTGAVAAASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
            FIGIE+  +Y+ +  +R++        EL  +  ++T+
Sbjct: 238 KFIGIELNNEYVKMGLRRLSVTSHYSENELAKVKKRKTQ 276


>gi|317179480|dbj|BAJ57268.1| Type II restriction enzyme M protein [Helicobacter pylori F30]
          Length = 276

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 105/258 (40%), Positives = 144/258 (55%), Gaps = 11/258 (4%)

Query: 10  NENQNSIFEWKDKI---IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           NE    IF+ +D++    +G+   VL +      DLIFADPPY L  +G L      +V 
Sbjct: 7   NEIARPIFKSQDQLFTLYQGDCNEVLPQFE-NQFDLIFADPPYFLSNDG-LSIQSGKIVS 64

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                WDK  S    D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F IL
Sbjct: 65  VNKGDWDKEESVNDIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRVLQKLDFKIL 124

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  
Sbjct: 125 NLITWQKTNPPPNFSCRYLTHSAEQIIWARKSRKHK-HVFNYEVLKKINNDKQMRDVWSF 183

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R
Sbjct: 184 PAIAPWEKTNGK-----HPTQKPLALLVRLLLMASDGNSLIGDPFSGSSTTGIAANLLKR 238

Query: 247 SFIGIEMKQDYIDIATKR 264
            FIGIE + +++ I+  R
Sbjct: 239 QFIGIEKESEFVKISMDR 256


>gi|228473121|ref|ZP_04057878.1| DNA-methyltransferase [Capnocytophaga gingivalis ATCC 33624]
 gi|228275703|gb|EEK14480.1| DNA-methyltransferase [Capnocytophaga gingivalis ATCC 33624]
          Length = 270

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 97/258 (37%), Positives = 147/258 (56%), Gaps = 11/258 (4%)

Query: 15  SIFEWKDK---IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
             F+ +DK   ++ G+++ +L +   +  D++FADPPY L  NG L   +  +V      
Sbjct: 4   PYFKSQDKSFYLLHGDTMELLPQFH-RKFDMVFADPPYFLS-NGGLTVNNGEIVSVDKGD 61

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           WDK       + F R WL   R V+K   T+W+ G+ HNIF +G +L  L F ILN I W
Sbjct: 62  WDKSKGIAFVNDFNRQWLTLVREVMKEEATIWISGTMHNIFSVGQILTELGFKILNIITW 121

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
            K+NP PNF  R F ++ E +IWA    K   Y FNY+ +K  N + QM+  W  P  + 
Sbjct: 122 EKTNPPPNFSCRYFTHSTEQIIWARKEEKTPHY-FNYELMKQLNGNKQMKDVWRFPAIAP 180

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
            E+   K     HPTQKP ++L+R++++ST+    ILDPF GS T+G  A  L R F+GI
Sbjct: 181 WEKSCGK-----HPTQKPLSVLTRLILASTQTNAWILDPFTGSSTTGIAANLLVRKFVGI 235

Query: 252 EMKQDYIDIATKRIASVQ 269
           + +QD+++++ KR   ++
Sbjct: 236 DKEQDFLELSKKRKFEIE 253


>gi|217034170|ref|ZP_03439589.1| hypothetical protein HP9810_886g7 [Helicobacter pylori 98-10]
 gi|216943338|gb|EEC22797.1| hypothetical protein HP9810_886g7 [Helicobacter pylori 98-10]
          Length = 276

 Score =  202 bits (515), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 102/258 (39%), Positives = 144/258 (55%), Gaps = 11/258 (4%)

Query: 10  NENQNSIFEWKDKI---IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           NE    IF+ +D++    +G+   +L +      DLIFADPPY L  +G L      +V 
Sbjct: 7   NEIARPIFKSQDQLFTLYQGDCNEILPQFE-NQFDLIFADPPYFLSNDG-LSIQSGKIVS 64

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                WDK  S    D F   W+   ++ LK  G+L + G+YHN+F +G +LQ L+F IL
Sbjct: 65  VNKGDWDKEESVNDIDEFNYQWINNAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKIL 124

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N + QMR  W  
Sbjct: 125 NLITWQKTNPPPNFSCRYLTHSAEQIIWARKSRKHK-HVFNYEILKKINNNKQMRDVWSF 183

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R
Sbjct: 184 PAIAPWEKANGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKR 238

Query: 247 SFIGIEMKQDYIDIATKR 264
            FIGIE + +++ I+  R
Sbjct: 239 QFIGIEKESEFVKISMDR 256


>gi|261838963|gb|ACX98728.1| typeII adenine methyltransferase [Helicobacter pylori 52]
          Length = 277

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 104/258 (40%), Positives = 144/258 (55%), Gaps = 11/258 (4%)

Query: 10  NENQNSIFEWKDKI---IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           NE    IF+ +D++    +G+   +L +      DLIFADPPY L  +G L      +V 
Sbjct: 7   NEIARPIFKSQDQLFTLYQGDCNEILPQFE-NQFDLIFADPPYFLSNDG-LSIQSGKIVS 64

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                WDK  S    D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F IL
Sbjct: 65  VNKGDWDKEESVNDIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKIL 124

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  
Sbjct: 125 NLITWQKTNPPPNFSCRYLTHSAEQIIWARKSHKHK-HVFNYEILKKINNDKQMRDVWSF 183

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R
Sbjct: 184 PAIAPWEKANGK-----HPTQKPLALLVRLLLMASDGNSLIGDPFSGSSTTGIAANLLKR 238

Query: 247 SFIGIEMKQDYIDIATKR 264
            FIGIE + +++ I+  R
Sbjct: 239 QFIGIEKESEFVKISMDR 256


>gi|315586126|gb|ADU40507.1| site-specific DNA-methyltransferase (adenine-specific)
           [Helicobacter pylori 35A]
          Length = 276

 Score =  202 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 105/258 (40%), Positives = 144/258 (55%), Gaps = 11/258 (4%)

Query: 10  NENQNSIFEWKDKI---IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           NE  + IF+ +D++    +G+   VL +      DLIFADPPY L  +G L      +V 
Sbjct: 7   NEIAHPIFKSQDQLFTLYQGDCNEVLPQFE-NQFDLIFADPPYFLSNDG-LSIQSGKIVS 64

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                WDK  S    D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F IL
Sbjct: 65  VNKGDWDKEESVNDIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRVLQKLDFKIL 124

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QM   W  
Sbjct: 125 NLITWQKTNPPPNFSCRYLTHSAEQIIWARKSRKHK-HVFNYEVLKKINNDKQMHDVWSF 183

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R
Sbjct: 184 PAIAPWEKTNGK-----HPTQKPLALLVRLLLMASDGNSLIGDPFSGSSTTGIAANLLKR 238

Query: 247 SFIGIEMKQDYIDIATKR 264
            FIGIE + ++I I+  R
Sbjct: 239 QFIGIEKESEFIQISMNR 256


>gi|281422930|ref|ZP_06253929.1| modification methylase CcrMI [Prevotella copri DSM 18205]
 gi|281403022|gb|EFB33702.1| modification methylase CcrMI [Prevotella copri DSM 18205]
          Length = 394

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 98/247 (39%), Positives = 140/247 (56%), Gaps = 8/247 (3%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+S  +L++L  + VD+IFADPPY L  + +  +   + V    D WDK  S+E  +
Sbjct: 13  LYHGDSNIILDQLE-EKVDMIFADPPYFLSNSKKTIQFGKTKVCDKGD-WDKVRSWEEIN 70

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           +F R W+  CR++LK NGT+WV G+YHNIF +   L    F ILN IVW+K +P P   G
Sbjct: 71  SFNRIWIEKCRKLLKENGTIWVCGTYHNIFSVEQCLIEFGFKILNIIVWQKLDPPPTPYG 130

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
            R   + E ++WA  +     + F+YD LK  N   +M   W        ER   K    
Sbjct: 131 GRLNFSAEYIVWARKNTNV-PHCFHYDLLKQMNGGKEMPDVWKFARPGFWERKCGK---- 185

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKP  LL RI+ + T+   IILDPF GS T+G  A  L R FIGI+M+++Y+D   
Sbjct: 186 -HPTQKPLRLLYRIVQTCTEKEGIILDPFCGSCTTGIAANLLSRKFIGIDMERNYLDYGI 244

Query: 263 KRIASVQ 269
           +R + ++
Sbjct: 245 RRKSEIK 251


>gi|15644722|ref|NP_206892.1| type II restriction enzyme M protein (hsdM) [Helicobacter pylori
           26695]
 gi|2313175|gb|AAD07163.1| type II restriction enzyme M protein (hsdM) [Helicobacter pylori
           26695]
          Length = 277

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 105/258 (40%), Positives = 144/258 (55%), Gaps = 11/258 (4%)

Query: 10  NENQNSIFEWKDKI---IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           NE    IF+ +D++    +G+   VL +      DLIFADPPY L  +G L      +V 
Sbjct: 7   NEIARPIFKSQDQLFTLYQGDCNEVLPQFE-NQFDLIFADPPYFLSNDG-LSIQSGKIVS 64

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                WDK       D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F IL
Sbjct: 65  VNKGDWDKEDGINGIDEFNYQWINNAKKALKDTGSLLISGTYHNIFSLGCVLQKLDFKIL 124

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  
Sbjct: 125 NLITWQKTNPPPNFSCRYLTHSAEQIIWARKSRKHK-HVFNYEVLKKINNDKQMRDVWSF 183

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E++  K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R
Sbjct: 184 PAIAPWEKVNGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKR 238

Query: 247 SFIGIEMKQDYIDIATKR 264
            FIGIE + ++I I+  R
Sbjct: 239 EFIGIEKESEFIKISMDR 256


>gi|238913534|ref|ZP_04657371.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 287

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 91/277 (32%), Positives = 142/277 (51%), Gaps = 33/277 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G++++ L+KLP++S+DLIFADPPYN+  +           D + +SWD+ S    +
Sbjct: 16  KIIHGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDEAS----F 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+    +  C RVLK +GT++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  LAWLYECIDECHRVLKKHGTMYIMNSTENMPYIDLKCRTL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDAL------KAANEDVQMRSDWLIPI------- 188
            + F + +E ++    +P  K YTFN DA+       A    +  R +   P        
Sbjct: 120 KKYFGSMYEPILMMVKNP--KSYTFNRDAILVETTTGAKRALIDYRKNPPQPYNQKKVPG 177

Query: 189 --CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
              S        D  + HPTQKP ALL RI+++S+ P D +LDPF GS T+GAVA    R
Sbjct: 178 NVWSFPRVRYLMDEYENHPTQKPSALLKRIILASSNPSDTVLDPFAGSFTTGAVAAASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            FIGIE+  +Y+ +  +R++        EL  +  ++
Sbjct: 238 KFIGIELNNEYVKMGLRRLSVTSHYSENELAKVKKRK 274


>gi|298736964|ref|YP_003729494.1| putative adenine-specific DNA-methyltransferase [Helicobacter
           pylori B8]
 gi|298356158|emb|CBI67030.1| putative adenine-specific DNA-methyltransferase [Helicobacter
           pylori B8]
          Length = 304

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 103/265 (38%), Positives = 144/265 (54%), Gaps = 11/265 (4%)

Query: 3   QKNSLAINENQNSIFEWKD---KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR 59
           ++  +        IF+  D    + +G+   VL +    + DLIFADPPY L  +G L  
Sbjct: 27  KQKKMKAPCLSRPIFKSTDELFTLYQGDCNEVLPQFE-NAFDLIFADPPYFLSNDG-LSI 84

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
               +V      WDK       D F   W+   ++ LK  G+L + G+YHNIF +G +LQ
Sbjct: 85  QSGKIVSVNKGDWDKEDGVNGIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRLLQ 144

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
            L+F ILN I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D Q
Sbjct: 145 KLDFKILNLITWQKTNPPPNFSCRYLTHSAEQIIWARKSHKHK-HVFNYEVLKKINNDKQ 203

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
           MR  W  P  +  E++  K     HPTQKP ALL R+L+ ++    +I DPF GS T+G 
Sbjct: 204 MRDVWSFPAIAPWEKVNGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGI 258

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKR 264
            A  L+R FIGIE + ++I I+  R
Sbjct: 259 AANLLKRQFIGIEKESEFIKISINR 283


>gi|254778814|ref|YP_003056919.1| M.HpyAIII, type II adenine methyltransferase [Helicobacter pylori
           B38]
 gi|254000725|emb|CAX28645.1| M.HpyAIII, type II adenine methyltransferase [Helicobacter pylori
           B38]
          Length = 277

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 105/258 (40%), Positives = 146/258 (56%), Gaps = 11/258 (4%)

Query: 10  NENQNSIFEWKDKI---IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           NE    IF+ +D++    +G+   VL +    + DLIFADPPY L  +G L      +V 
Sbjct: 7   NEIARPIFKSQDQLFTLYQGDCNEVLPQFE-NAFDLIFADPPYFLSNDG-LSIQSGKIVS 64

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                WDK +     D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F IL
Sbjct: 65  VNKGDWDKENGINGIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKIL 124

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  
Sbjct: 125 NLITWQKTNPPPNFSCRYLTHSAEQIIWARKSHKHK-HVFNYEVLKKINNDKQMRDVWSF 183

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E++  K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R
Sbjct: 184 PAITPWEKVNGK-----HPTQKPLALLVRLLLMASDGNSLIGDPFSGSSTTGIAANLLKR 238

Query: 247 SFIGIEMKQDYIDIATKR 264
            FIGIE + ++I I+  R
Sbjct: 239 EFIGIEKESEFIKISMNR 256


>gi|33337325|gb|AAQ13330.1| HpyIIIM protein [Helicobacter pylori]
          Length = 276

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 104/258 (40%), Positives = 142/258 (55%), Gaps = 11/258 (4%)

Query: 10  NENQNSIFEWKDKI---IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           NE    IF  +D++    +G+   VL +      DLIFADPPY L  +G L      +V 
Sbjct: 7   NEIARPIFTSQDQLFTLYQGDCNEVLPQFE-NQFDLIFADPPYFLSNDG-LSIQSGKIVS 64

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                WDK  S    D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F IL
Sbjct: 65  VNKGDWDKEESVNGIDEFNYQWISNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKIL 124

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W+K+N  PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  
Sbjct: 125 NLITWQKTNHPPNFSCRYLTHSAEQIIWARKSRKHK-HVFNYEVLKKINNDKQMRDVWSF 183

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R
Sbjct: 184 PAIAPWEKANGK-----HPTQKPLALLVRLLLMASGENSLIGDPFSGSSTTGIAANLLKR 238

Query: 247 SFIGIEMKQDYIDIATKR 264
            FIGIE + +++ I+  R
Sbjct: 239 QFIGIEKESEFVKISMDR 256


>gi|332672934|gb|AEE69751.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori 83]
          Length = 273

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 101/255 (39%), Positives = 142/255 (55%), Gaps = 11/255 (4%)

Query: 13  QNSIFEWKDKI---IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
              IF+  D++    +G+   VL +    + DLIFADPPY L  +G L      +V    
Sbjct: 7   SRPIFKSTDRLFTLYQGDCNEVLPQFE-NAFDLIFADPPYFLSNDG-LNIQSGKIVSVNK 64

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
             WDK    +  D F   W+   ++ LK  G+L + G+YHNIF +  +LQ L+F ILN I
Sbjct: 65  GDWDKEYGIDDIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLRRLLQKLDFKILNLI 124

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
            W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  P  
Sbjct: 125 TWQKTNPPPNFSCRYLTHSAEQIIWARKSHKHK-HVFNYEVLKKINNDKQMRDVWSFPAI 183

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           +  E++  K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FI
Sbjct: 184 APWEKVNGK-----HPTQKPLALLVRLLLMASGENSLIGDPFSGSSTTGIAANLLKRQFI 238

Query: 250 GIEMKQDYIDIATKR 264
           GIE + +++ I+  R
Sbjct: 239 GIEKESEFVKISMDR 253


>gi|33337323|gb|AAQ13329.1| HpyIIIM protein [Helicobacter pylori]
          Length = 277

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 104/258 (40%), Positives = 145/258 (56%), Gaps = 11/258 (4%)

Query: 10  NENQNSIFEWKDKI---IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           NE    IF+ +D++    +G+   VL +      DLIFADPPY L  +G L      +V 
Sbjct: 7   NEIARPIFKSQDQLFTLYQGDCNEVLPQFE-NQFDLIFADPPYFLSNDG-LSIQSGKIVS 64

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                WDK    +  D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F IL
Sbjct: 65  VNKGDWDKEDGIDDIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKIL 124

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  
Sbjct: 125 NLITWQKTNPPPNFSCRYLTHSAEQIIWARKSHKHK-HVFNYEVLKKINNDKQMRDVWSF 183

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E++  K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L++
Sbjct: 184 PAIAPWEKVNGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKK 238

Query: 247 SFIGIEMKQDYIDIATKR 264
            FIGIE + ++I I+  R
Sbjct: 239 QFIGIEKESEFIQISMNR 256


>gi|108562518|ref|YP_626834.1| type II adenine methyltransferase [Helicobacter pylori HPAG1]
 gi|107836291|gb|ABF84160.1| type II adenine methyltransferase [Helicobacter pylori HPAG1]
          Length = 273

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 102/253 (40%), Positives = 142/253 (56%), Gaps = 11/253 (4%)

Query: 15  SIFEWKDKI---IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
            IF+ +D++    +G+   VL +    + DLIFADPPY L  +G L      +V      
Sbjct: 9   PIFKSQDQLFTLYQGDCNEVLPQFE-NAFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGD 66

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           WDK +     D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F ILN I W
Sbjct: 67  WDKENGINDIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRLLQKLDFKILNLITW 126

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
           +K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QM   W  P  + 
Sbjct: 127 QKTNPPPNFSCRYLTHSAEQIIWARKSRKHK-HVFNYEVLKKINNDKQMHDVWSFPAIAP 185

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
            E++  K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L R FIGI
Sbjct: 186 WEKVNGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLNREFIGI 240

Query: 252 EMKQDYIDIATKR 264
           E + ++I I+  R
Sbjct: 241 EKESEFIKISMDR 253


>gi|217032871|ref|ZP_03438349.1| hypothetical protein HPB128_1g8 [Helicobacter pylori B128]
 gi|216945411|gb|EEC24077.1| hypothetical protein HPB128_1g8 [Helicobacter pylori B128]
          Length = 274

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 103/255 (40%), Positives = 141/255 (55%), Gaps = 11/255 (4%)

Query: 13  QNSIFEWKD---KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
              IF+  D    + +G+   VL +    + DLIFADPPY L  +G L      +V    
Sbjct: 7   SRPIFKSTDELFTLYQGDCNEVLPQFE-NAFDLIFADPPYFLSNDG-LSIQSGKIVSVNK 64

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
             WDK       D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F ILN I
Sbjct: 65  GDWDKEDGVNGIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRLLQKLDFKILNLI 124

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
            W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  P  
Sbjct: 125 TWQKTNPPPNFSCRYLTHSAEQIIWARKSHKHK-HVFNYEVLKKINNDKQMRDVWSFPAI 183

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           +  E++  K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FI
Sbjct: 184 APWEKVNGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKRQFI 238

Query: 250 GIEMKQDYIDIATKR 264
           GIE + ++I I+  R
Sbjct: 239 GIEKESEFIKISINR 253


>gi|208434055|ref|YP_002265721.1| typeII adenine methyltransferase [Helicobacter pylori G27]
 gi|208431984|gb|ACI26855.1| typeII adenine methyltransferase [Helicobacter pylori G27]
          Length = 277

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 105/258 (40%), Positives = 144/258 (55%), Gaps = 11/258 (4%)

Query: 10  NENQNSIFEWKD---KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           NE    IF+  D    + +G+   VL +    + DLIFADPPY L  +G L      +V 
Sbjct: 7   NEIARPIFKSADELFTLYQGDCNEVLPQFE-NAFDLIFADPPYFLSNDG-LSIQSGKIVS 64

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                WDK +     D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F IL
Sbjct: 65  VNKGDWDKENGINDIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRLLQKLDFKIL 124

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  
Sbjct: 125 NLITWQKTNPPPNFSCRYLTHSAEQIIWARKSRKHK-HVFNYEVLKKINNDKQMRDVWSF 183

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E++  K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R
Sbjct: 184 PAIAPWEKVNGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKR 238

Query: 247 SFIGIEMKQDYIDIATKR 264
            FIGIE + ++I I+  R
Sbjct: 239 EFIGIEKESEFIKISMDR 256


>gi|33337331|gb|AAQ13333.1| HpyIIIM protein [Helicobacter pylori]
          Length = 274

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 101/255 (39%), Positives = 143/255 (56%), Gaps = 11/255 (4%)

Query: 13  QNSIFEWKDKI---IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
              IF+ +D++    +G+   VL +      DLIFADPPY L  +G L   +  +V    
Sbjct: 7   SRPIFKSQDQLFTLYQGDCNEVLPQFE-NQFDLIFADPPYFLSNDG-LSIQNGKIVSVNK 64

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
             WDK  S    D F   W+   ++ LK  G+L + G+YHN+F +G +LQ L+F ILN I
Sbjct: 65  GDWDKEESVNDIDEFNYQWINNAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKILNLI 124

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
            W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  P  
Sbjct: 125 TWQKTNPPPNFSCRYLTHSAEQIIWARKSHKHK-HVFNYEVLKKINNDKQMRDVWSFPAI 183

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           +  E++  K      PTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FI
Sbjct: 184 APWEKVNGKR-----PTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKRQFI 238

Query: 250 GIEMKQDYIDIATKR 264
           GIE + +++ I+  R
Sbjct: 239 GIEKESEFVKISMDR 253


>gi|81427756|ref|YP_394755.1| putative adenine-specifique DNA methyltransferase [Lactobacillus
           sakei subsp. sakei 23K]
 gi|78609397|emb|CAI54443.1| Putative adenine-specifique DNA methyltransferase [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 261

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 95/248 (38%), Positives = 140/248 (56%), Gaps = 9/248 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+I  ++   +++ P+ SVD+I ADPPY L  NG        +V      WDK +  +  
Sbjct: 15  KLICSDTFECMQRFPSNSVDVIIADPPYFLS-NGGFSNSGGKMVSVNKGEWDKINDVKP- 72

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           + F    + +  R+LK +GT+WV GS HNI+ +G +L    F ILN+I W+KSNP PN  
Sbjct: 73  EVFYTRLIRSADRILKKDGTIWVFGSMHNIYILGYLLPKYGFKILNNITWQKSNPAPNLS 132

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R F ++ ET+IWA     +    FNYD +K  N   QM+  W  P  +  ER   +   
Sbjct: 133 KRMFTHSTETIIWAKKE--SGKQFFNYDLMKELNHSSQMKDVWTTPTINNYERRFGR--- 187

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP +++ R++ +ST  G I+LDPF GSGT+     +     IGI+  QDY++IA
Sbjct: 188 --HPTQKPLSVIDRMVKASTDSGMILLDPFVGSGTTAVAGARNGIRTIGIDNSQDYLNIA 245

Query: 262 TKRIASVQ 269
            KR+++ Q
Sbjct: 246 IKRVSNFQ 253


>gi|33337329|gb|AAQ13332.1| HpyIIIM protein [Helicobacter pylori]
          Length = 274

 Score =  199 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 102/253 (40%), Positives = 141/253 (55%), Gaps = 11/253 (4%)

Query: 15  SIFEWKDKI---IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
            IF+ +D++    +G+   VL +      DLIFADPPY L  +G L      +V      
Sbjct: 9   PIFKSQDQLFTLYQGDCNEVLPQFE-NQFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGD 66

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           WDK  S    D F   W+   ++ LK  G+L +  +YHNIF +G +LQ L+F ILN I W
Sbjct: 67  WDKEESVNDIDEFNYQWINNAKKALKNTGSLLISRTYHNIFSLGRVLQKLDFKILNLITW 126

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
           +K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  P  + 
Sbjct: 127 QKTNPPPNFSCRYLTHSAEQIIWARKSRKHK-HVFNYEVLKKINNDKQMRDVWSFPAIAP 185

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
            E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGI
Sbjct: 186 WEKANGK-----HPTQKPLALLVRLLLMASGENSLIGDPFSGSSTTGIAANLLKRQFIGI 240

Query: 252 EMKQDYIDIATKR 264
           E + +++ I+  R
Sbjct: 241 EKESEFVKISMDR 253


>gi|205354287|ref|YP_002228088.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205274068|emb|CAR39074.1| putative adenine-specific DNA-modification methylase [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|326629410|gb|EGE35753.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 294

 Score =  199 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 91/279 (32%), Positives = 143/279 (51%), Gaps = 33/279 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G++++ L+KLP++S+DLIFADPPYN+  +           D + +SWD+ S    +
Sbjct: 16  KIIHGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDEAS----F 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+    +  C RVLK +GT++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  LAWLYECIDECHRVLKKHGTMYIMNSTENMPYIDLKCRTL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDAL------KAANEDVQMRSDWLIPI------- 188
            + F + +E ++    +P  K YTFN DA+       A    +  R +   P        
Sbjct: 120 KKYFGSMYEPILMMVKNP--KSYTFNRDAILVETTTGAKRALIDYRKNPPQPYNQKKVPG 177

Query: 189 --CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
              S        D  + HPTQKP ALL RI+++S+ P D +LDPF GS T+GAVA     
Sbjct: 178 NVWSFPRVRYLMDEYENHPTQKPSALLKRIILASSNPSDTVLDPFAGSFTTGAVAAASGC 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
            FIGIE+  +Y+ +  +R++        EL  +  ++T+
Sbjct: 238 KFIGIELNNEYVKMGLRRLSVTSHYSENELAKVKKRKTQ 276


>gi|210134296|ref|YP_002300735.1| type II R-M system methyltransferase [Helicobacter pylori P12]
 gi|210132264|gb|ACJ07255.1| type II R-M system methyltransferase [Helicobacter pylori P12]
          Length = 282

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 104/258 (40%), Positives = 143/258 (55%), Gaps = 11/258 (4%)

Query: 10  NENQNSIFEWKD---KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           NE  + IF+  D    + +G+   VL +    + DLIFADPPY L  +G L      +V 
Sbjct: 7   NEIAHPIFKSTDELFTLYQGDCNEVLSQFE-NAFDLIFADPPYFLSNDG-LSIQSGKIVS 64

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                WDK       D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F IL
Sbjct: 65  VNKGDWDKEDGINGIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKIL 124

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N + QMR  W  
Sbjct: 125 NLITWQKTNPPPNFSCRYLTHSAEQIIWARKSRKHK-HVFNYEILKKINNNKQMRDVWSF 183

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R
Sbjct: 184 PAIAPWEKANGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKR 238

Query: 247 SFIGIEMKQDYIDIATKR 264
            FIGIE + ++I I+  R
Sbjct: 239 EFIGIEKESEFIKISINR 256


>gi|213580282|ref|ZP_03362108.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 267

 Score =  199 bits (506), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 90/269 (33%), Positives = 138/269 (51%), Gaps = 33/269 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G++++ L+KLP++S+DLIFADPPYN+  +           D + +SWD+ S    +
Sbjct: 16  KIIHGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDEAS----F 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+    +  C RVLK +GT++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  LAWLYECIDECHRVLKKHGTMYIMNSTENMPYIDLKCRTL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDAL------KAANEDVQMRSDWLIPI------- 188
            + F + +E ++    +P  K YTFN DA+       A    +  R +   P        
Sbjct: 120 KKYFGSMYEPILMMVKNP--KSYTFNRDAILVETTTGAKRALIDYRKNPPQPYNQKKVPG 177

Query: 189 --CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
              S        D  + HPTQKP ALL RI+++S+ P D +LDPF GS T+GAVA    R
Sbjct: 178 NVWSFPRVRYLMDEYENHPTQKPSALLKRIILASSNPSDTVLDPFAGSFTTGAVAAASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIE 275
            FIGIE+  +Y+ +  +R++        E
Sbjct: 238 KFIGIELNNEYVKMGLRRLSVTSHYSENE 266


>gi|317011937|gb|ADU82545.1| type II adenine methyltransferase [Helicobacter pylori Lithuania75]
          Length = 273

 Score =  199 bits (506), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 102/255 (40%), Positives = 142/255 (55%), Gaps = 11/255 (4%)

Query: 13  QNSIFEWKDKI---IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
              IF+ +D++    +G+   VL +    + DLIFADPPY L  +G L      +V    
Sbjct: 7   SRPIFKSQDQLFTLYQGDCNEVLPQFE-NAFDLIFADPPYFLSNDG-LSIQSGKIVSVNK 64

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
             WDK       D F   W+   ++ LK  G+L + G+YHN+F +G +LQ L+F ILN I
Sbjct: 65  GDWDKEDGINGIDEFNYQWINNAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKILNLI 124

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
            W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  P  
Sbjct: 125 TWQKTNPPPNFSCRYLTHSAEQIIWARKSRKHK-HVFNYEVLKKINNDKQMRDVWSFPAI 183

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           +  E++  K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FI
Sbjct: 184 APWEKVNGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKREFI 238

Query: 250 GIEMKQDYIDIATKR 264
           GIE +  +I I+  R
Sbjct: 239 GIEKESGFIKISMDR 253


>gi|213028799|ref|ZP_03343246.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 279

 Score =  199 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 90/269 (33%), Positives = 138/269 (51%), Gaps = 33/269 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G++++ L+KLP++S+DLIFADPPYN+  +           D + +SWD+ S    +
Sbjct: 16  KIIHGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDEAS----F 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+    +  C RVLK +GT++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  LAWLYECIDECHRVLKKHGTMYIMNSTENMPYIDLKCRTL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDAL------KAANEDVQMRSDWLIPI------- 188
            + F + +E ++    +P  K YTFN DA+       A    +  R +   P        
Sbjct: 120 KKYFGSMYEPILMMVKNP--KSYTFNRDAILVETTTGAKRALIDYRKNPPQPYNQKKVPG 177

Query: 189 --CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
              S        D  + HPTQKP ALL RI+++S+ P D +LDPF GS T+GAVA    R
Sbjct: 178 NVWSFPRVRYLMDEYENHPTQKPSALLKRIILASSNPSDTVLDPFAGSFTTGAVAAASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIE 275
            FIGIE+  +Y+ +  +R++        E
Sbjct: 238 KFIGIELNNEYVKMGLRRLSVTSHYSENE 266


>gi|33337333|gb|AAQ13334.1| HpyIIIM protein [Helicobacter pylori]
          Length = 268

 Score =  199 bits (505), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 103/255 (40%), Positives = 143/255 (56%), Gaps = 11/255 (4%)

Query: 13  QNSIFEWKDKI---IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
              IF+ +D++    +G+   VL +    + DLIFADPPY L  +G L      +V    
Sbjct: 7   SRPIFKSQDQLFTLYQGDCNEVLPQFE-NAFDLIFADPPYFLSNDG-LSIQSGKIVSVNK 64

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
             WDK +     D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F ILN I
Sbjct: 65  GDWDKENGINDIDEFNCQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKILNLI 124

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
            W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  P  
Sbjct: 125 TWQKTNPPPNFSCRYLTHSAEQIIWARKSRKHK-HVFNYEVLKKINNDKQMRDVWSFPAI 183

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           +  E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FI
Sbjct: 184 APWEKANGK-----HPTQKPLALLVRLLLMASDGNSLIGDPFSGSSTTGIAANLLKRQFI 238

Query: 250 GIEMKQDYIDIATKR 264
           GIE + ++I I+  R
Sbjct: 239 GIEKESEFIKISMNR 253


>gi|323173479|gb|EFZ59108.1| hypothetical protein ECLT68_1794 [Escherichia coli LT-68]
          Length = 315

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 87/279 (31%), Positives = 135/279 (48%), Gaps = 33/279 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
            FIGIE+  +YI +  +R+         EL  +  +R  
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKERRA 276


>gi|308183890|ref|YP_003928023.1| M.HpyAIII, type II adenine methyltransferase [Helicobacter pylori
           SJM180]
 gi|308059810|gb|ADO01706.1| M.HpyAIII, type II adenine methyltransferase [Helicobacter pylori
           SJM180]
          Length = 273

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 102/255 (40%), Positives = 142/255 (55%), Gaps = 11/255 (4%)

Query: 13  QNSIFEWKDKI---IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
              IF+ +D++    +G+   VL +    + DLIFADPPY L  +G L      +V    
Sbjct: 7   SRPIFKSQDQLFTLYQGDCNEVLPQFE-NAFDLIFADPPYFLSNDG-LSIQSGKIVSVNK 64

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
             WDK +     D F   W+   ++ LK  G+L + G+YHN+F +G +LQ L+F ILN I
Sbjct: 65  GDWDKENGINDIDEFNHQWINNAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKILNLI 124

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
            W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  P  
Sbjct: 125 TWQKTNPPPNFSCRYLTHSAEQIIWARKSFKHK-HVFNYEVLKKINNDKQMRDVWSFPAI 183

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           +  E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FI
Sbjct: 184 APWEKANGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKREFI 238

Query: 250 GIEMKQDYIDIATKR 264
           GIE +  +I I+  R
Sbjct: 239 GIEKESGFIKISMNR 253


>gi|157148841|ref|YP_001456160.1| putative methyltransferase [Citrobacter koseri ATCC BAA-895]
 gi|157086046|gb|ABV15724.1| hypothetical protein CKO_04674 [Citrobacter koseri ATCC BAA-895]
          Length = 294

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 90/278 (32%), Positives = 140/278 (50%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G+++S L+KLP +S DLIFADPPYN+  N           D + +SWD+    E +
Sbjct: 16  KIIHGDALSELKKLPPESADLIFADPPYNIGKN----------FDGLVESWDE----ETF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+    +  C RVLK +GT++++ S  N+  +    + L F I + I+W   +      
Sbjct: 62  LAWLFECIDECHRVLKKHGTMYIMNSTENMPYLDLKCRKL-FDIKSRIIWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED------VQMRSDWLIPI------- 188
            + F + +E ++       AK YTFN D +    +       +  R +   P        
Sbjct: 120 KKYFGSMYEPILMMVKD--AKNYTFNRDDILVETKTGAKRALIDYRKNPPQPYNTQKVPG 177

Query: 189 --CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                       D  + HPTQKP ALLSRI+++S+ PGD +LDPF GS T+GAVA +  R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPRALLSRIILASSNPGDTVLDPFAGSFTTGAVAVETGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            F+GIE+  +Y+ +  +R+         EL  +  ++T
Sbjct: 238 KFVGIEINDEYVKMGIRRLNVTSHYAENELAKVKKRKT 275


>gi|283836189|ref|ZP_06355930.1| DNA (cytosine-5-)-methyltransferase [Citrobacter youngae ATCC
           29220]
 gi|291067540|gb|EFE05649.1| DNA (cytosine-5-)-methyltransferase [Citrobacter youngae ATCC
           29220]
          Length = 294

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 85/284 (29%), Positives = 143/284 (50%), Gaps = 43/284 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G++++ L+KLP++SVDLIFADPPYN+  +           D + + W++    E +
Sbjct: 16  KIILGDALTELKKLPSESVDLIFADPPYNIGKD----------FDGMVERWNE----ETF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+    +  C R+LKP+GT++++ S  N+  I    + + F I + IVW   +     +
Sbjct: 62  LAWLFECIDECHRILKPHGTMYIMNSTENMPYIDLKCRQI-FTIKSRIVWSYDSSGVQAK 120

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNY--------------------DALKAANEDVQMR 181
              F + +E ++        K YTFN                     +  +  N+     
Sbjct: 121 N-YFGSMYEPILMMVKDQ--KNYTFNRDDVLVEAKTGAKRALIDYRKNPPQPYNQKKVPG 177

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
           + W  P           D  + HPTQKP+ALL RI+++S+ P D +LDPF GS T+GA A
Sbjct: 178 NVWDFPRV-----RYLMDEYENHPTQKPKALLERIILASSNPDDKVLDPFAGSFTTGATA 232

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
            +L R F+GIE+  +Y+ +  +R++       +EL  +  ++T+
Sbjct: 233 VELGRQFVGIEINAEYVKMGLRRLSIGSHFSEVELAKVKKRKTK 276


>gi|300313354|ref|YP_003777446.1| DNA-methyltransferase [Herbaspirillum seropedicae SmR1]
 gi|300076139|gb|ADJ65538.1| DNA-methyltransferase (DNA-modification methylase) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 276

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 82/281 (29%), Positives = 137/281 (48%), Gaps = 36/281 (12%)

Query: 19  WKDKIIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           W D++   +++S    L ++P  SVDL+ ADPPY L   G+ Y  D   +D         
Sbjct: 13  WLDRVFCEDALSAVGGLARIPDGSVDLMIADPPYGL---GKDYGNDSDKLDTA------- 62

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
               AY A+T  W+ A    LKPNG+L++  ++ N   I  ML+     ++N+I+W +  
Sbjct: 63  ----AYLAWTEQWVDAALPKLKPNGSLYIFLTWRNSPEIFVMLKQ-RMTMINEIIWDRRV 117

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS---------DWL- 185
           P      RR+ + H+T+ + +    AK Y F+ DA++   +    ++          WL 
Sbjct: 118 PSMGGSTRRYSSVHDTIGFFAR---AKDYFFDLDAIRIPYDAQTKKARSRSIFVGAKWLE 174

Query: 186 -----IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
                  + S S   R       HPTQKP  ++ R++ +S  PG ++LDPF GSGT+   
Sbjct: 175 MGYNPKDVWSVSRLHREHKERADHPTQKPLEVVERMVKASCPPGGVVLDPFMGSGTTAVA 234

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
           A++  R F G E+  DY ++  +R+ ++ P    +  + T 
Sbjct: 235 ARRCGRHFTGFELNPDYCELIRQRLDALAPAHQDDEALRTQ 275


>gi|161506057|ref|YP_001573169.1| putative methyltransferase [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160867404|gb|ABX24027.1| hypothetical protein SARI_04244 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 294

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 92/281 (32%), Positives = 144/281 (51%), Gaps = 33/281 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G++++ L+KLP++S+DLIFADPPYN+  +           D + +SWD+ S    +
Sbjct: 16  KIILGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDEAS----F 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+    +  C RVLK +GT++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  LAWLYECVDECYRVLKKHGTMYIMNSTENMPYIDLKCRTL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDAL------KAANEDVQMRSDWLIPI------- 188
            + F + +E ++       +K YTFN DA+       A    +  R +   P        
Sbjct: 120 KKYFGSMYEPILMMVKD--SKTYTFNRDAILVETTTGAKRALIDYRKNPPQPYNQKKVPG 177

Query: 189 --CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
              S        D  + HPTQKP ALL RI+++S+  GD +LDPF GS T+GAVA    R
Sbjct: 178 NVWSFPRVRYLMDEYENHPTQKPSALLKRIILASSNLGDTVLDPFAGSFTTGAVAAASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
            FIGIE+  +Y+ I  +R++        +L  +  ++T+ R
Sbjct: 238 KFIGIEINNEYVKIGLRRLSVTSHYSENDLAKVKKRKTKNR 278


>gi|317010373|gb|ADU84120.1| typeII adenine methyltransferase [Helicobacter pylori SouthAfrica7]
          Length = 284

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 102/258 (39%), Positives = 140/258 (54%), Gaps = 11/258 (4%)

Query: 10  NENQNSIFEWKD---KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           N+    IFE  D    + + +   VL      + DLIFADPPY L  +G L      +V 
Sbjct: 7   NQPPRPIFESIDELFTLYQEDCNEVLPLFE-NAFDLIFADPPYFLSNDG-LSIQSGKIVS 64

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                WDK       D F   W+   ++ LK  G+L + G+YHN+F +G +LQ L+F IL
Sbjct: 65  VNKGDWDKEEGVNGIDEFNHQWINNAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKIL 124

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  
Sbjct: 125 NLITWQKTNPPPNFSCRYLTHSAEQIIWARKSRKHK-HVFNYEILKKINNDKQMRDVWNF 183

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R
Sbjct: 184 PAIAPWEKANGK-----HPTQKPLALLVRLLLMASDDNSLIGDPFSGSSTTGIAANLLKR 238

Query: 247 SFIGIEMKQDYIDIATKR 264
            FIGIE + +++ I+  R
Sbjct: 239 KFIGIEKESEFVKISMNR 256


>gi|237730180|ref|ZP_04560661.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226908786|gb|EEH94704.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 294

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 89/284 (31%), Positives = 145/284 (51%), Gaps = 43/284 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G++++ L+KLP++SV+LIFADPPYN+  +           D + +SWD+    EA+
Sbjct: 16  KIILGDALTELKKLPSESVELIFADPPYNIGKD----------FDGMVESWDE----EAF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+    +  C R+LKP+GT++++ S  N+  I    + L F I + IVW   +     +
Sbjct: 62  LAWLFECIDECHRILKPHGTMYIMNSTENMPYIDLKCRPL-FTIKSRIVWSYDSSGVQAK 120

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNY--------------------DALKAANEDVQMR 181
              F + +E ++        K YTFN                     +  +  N+     
Sbjct: 121 N-YFGSMYEPILMMVKDQ--KNYTFNRDDILVEAKTGAKRALIDYRKNPPQPYNQKKVPG 177

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
           + W  P           D  + HPTQKP+ALL RI+++S+ P D +LDPF GS T+GA A
Sbjct: 178 NVWEFPRV-----RYLMDEYENHPTQKPKALLERIILASSNPDDKVLDPFAGSFTTGATA 232

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
            +L R F+GIE+  +Y+ +  +R++       IEL  +  ++T+
Sbjct: 233 VELGRKFVGIEINTEYVKMGLRRLSIGSHFSEIELAKVKKRKTK 276


>gi|15611155|ref|NP_222806.1| type II DNA modification (methyltransferase [Helicobacter pylori
           J99]
 gi|4154584|gb|AAD05658.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
           pylori J99]
          Length = 277

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 104/258 (40%), Positives = 144/258 (55%), Gaps = 11/258 (4%)

Query: 10  NENQNSIFEWKDKI---IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           NE  + IF+  DK+    +G+   VL +    + DLIFADPPY L  +G L      +V 
Sbjct: 7   NEIAHPIFKSADKLFTLYQGDCNEVLPQFE-NAFDLIFADPPYFLSNDG-LSIQSGKIVS 64

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                WDK +     D F   W+   ++ LK  G+L + G+YHN+F +G +LQ L+F IL
Sbjct: 65  VNKGDWDKENGINDIDEFNYQWINNAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKIL 124

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N + QMR  W  
Sbjct: 125 NLITWQKTNPPPNFSCRYLTHSAEQIIWARKSYKHK-HVFNYEILKKINNNKQMRDVWNF 183

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R
Sbjct: 184 PAIAPWEKANGK-----HPTQKPLALLVRLLLMASDDNSLIGDPFSGSSTTGIAANLLKR 238

Query: 247 SFIGIEMKQDYIDIATKR 264
            FIGIE +  +I I+  R
Sbjct: 239 EFIGIEKESRFIKISMNR 256


>gi|237705980|ref|ZP_04536461.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|26110282|gb|AAN82468.1|AE016767_228 Hypothetical adenine-specific methylase yhdJ [Escherichia coli
           CFT073]
 gi|91074267|gb|ABE09148.1| hypothetical adenine-specific methylase YhdJ [Escherichia coli
           UTI89]
 gi|226899020|gb|EEH85279.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
          Length = 296

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 88/278 (31%), Positives = 137/278 (49%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II+G++++ L+KLPA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 18  TIIQGDALTELKKLPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 63

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 64  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 121

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 122 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALINYRKNPPQPYNHQKVPG 179

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 180 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVASGR 239

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 240 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 277


>gi|331649063|ref|ZP_08350151.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M605]
 gi|331042810|gb|EGI14952.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M605]
          Length = 296

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 88/278 (31%), Positives = 137/278 (49%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II+G++++ L+KLPA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 18  TIIQGDALTELKKLPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 63

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 64  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 121

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 122 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALINYRKNPPQPYNHQKVPG 179

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 180 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVASGR 239

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 240 KFIGIELNSEYIKMGLRRLDVASHYSAEELAKVKKRKT 277


>gi|293412630|ref|ZP_06655353.1| adenine-specific methylase yhdJ [Escherichia coli B354]
 gi|291469401|gb|EFF11892.1| adenine-specific methylase yhdJ [Escherichia coli B354]
          Length = 296

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 88/281 (31%), Positives = 138/281 (49%), Gaps = 33/281 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II+G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 18  TIIQGDALTELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 63

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 64  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 121

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 122 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 179

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 180 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVASGR 239

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
            FIGIE+  +YI +  +R+         EL  +  ++T  R
Sbjct: 240 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNR 280


>gi|110643506|ref|YP_671236.1| putative methyltransferase [Escherichia coli 536]
 gi|191173825|ref|ZP_03035346.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           F11]
 gi|300979712|ref|ZP_07174662.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 200-1]
 gi|110345098|gb|ABG71335.1| hypothetical adenine-specific methylase YhdJ [Escherichia coli 536]
 gi|190905875|gb|EDV65493.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           F11]
 gi|300307930|gb|EFJ62450.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 200-1]
 gi|315300926|gb|EFU60146.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 16-3]
 gi|324015871|gb|EGB85090.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 60-1]
          Length = 294

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 88/278 (31%), Positives = 137/278 (49%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II+G++++ L+KLPA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIQGDALTELKKLPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|320194748|gb|EFW69378.1| Adenine-specific methyltransferase [Escherichia coli WV_060327]
          Length = 294

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 88/278 (31%), Positives = 137/278 (49%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II+G++++ L+KLPA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIQGDALTELKKLPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|157162743|ref|YP_001460061.1| putative methyltransferase [Escherichia coli HS]
 gi|157068423|gb|ABV07678.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli HS]
          Length = 294

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 88/281 (31%), Positives = 136/281 (48%), Gaps = 33/281 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
            FIGIE+  +YI +  +R+         EL  +  ++T  R
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNR 278


>gi|117625553|ref|YP_858876.1| putative methyltransferase [Escherichia coli APEC O1]
 gi|161486097|ref|NP_755894.2| putative methyltransferase [Escherichia coli CFT073]
 gi|162138359|ref|YP_542679.2| putative methyltransferase [Escherichia coli UTI89]
 gi|218560331|ref|YP_002393244.1| methyltransferase [Escherichia coli S88]
 gi|218691553|ref|YP_002399765.1| putative methyltransferase [Escherichia coli ED1a]
 gi|227887988|ref|ZP_04005793.1| site-specific DNA-methyltransferase (adenine-specific) [Escherichia
           coli 83972]
 gi|300991060|ref|ZP_07179481.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 45-1]
 gi|301047882|ref|ZP_07194929.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 185-1]
 gi|306816395|ref|ZP_07450527.1| putative methyltransferase [Escherichia coli NC101]
 gi|331659551|ref|ZP_08360493.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA206]
 gi|115514677|gb|ABJ02752.1| putative adenine-specific methylase YhdJ [Escherichia coli APEC O1]
 gi|218367100|emb|CAR04873.1| methyltransferase [Escherichia coli S88]
 gi|218429117|emb|CAR09924.1| methyltransferase [Escherichia coli ED1a]
 gi|222034978|emb|CAP77721.1| Uncharacterized adenine-specific methylase yhdJ [Escherichia coli
           LF82]
 gi|227835384|gb|EEJ45850.1| site-specific DNA-methyltransferase (adenine-specific) [Escherichia
           coli 83972]
 gi|281180304|dbj|BAI56634.1| putative methyltransferase [Escherichia coli SE15]
 gi|294489786|gb|ADE88542.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           IHE3034]
 gi|300300225|gb|EFJ56610.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 185-1]
 gi|300406981|gb|EFJ90519.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 45-1]
 gi|305849960|gb|EFM50419.1| putative methyltransferase [Escherichia coli NC101]
 gi|307555356|gb|ADN48131.1| DNA methylase [Escherichia coli ABU 83972]
 gi|307625138|gb|ADN69442.1| putative methyltransferase [Escherichia coli UM146]
 gi|312947819|gb|ADR28646.1| putative methyltransferase [Escherichia coli O83:H1 str. NRG 857C]
 gi|315294813|gb|EFU54156.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 153-1]
 gi|323951218|gb|EGB47093.1| DNA methylase [Escherichia coli H252]
 gi|323957590|gb|EGB53304.1| DNA methylase [Escherichia coli H263]
 gi|324009091|gb|EGB78310.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 57-2]
 gi|331054133|gb|EGI26162.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA206]
          Length = 294

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 88/278 (31%), Positives = 137/278 (49%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II+G++++ L+KLPA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIQGDALTELKKLPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALINYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|218696961|ref|YP_002404628.1| putative methyltransferase [Escherichia coli 55989]
 gi|218353693|emb|CAU99950.1| methyltransferase [Escherichia coli 55989]
 gi|320202171|gb|EFW76746.1| Adenine-specific methyltransferase [Escherichia coli EC4100B]
          Length = 294

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 88/281 (31%), Positives = 137/281 (48%), Gaps = 33/281 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
            FIGIE+  +YI +  +R+         EL  +  ++T  R
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNR 278


>gi|330909313|gb|EGH37827.1| adenine-specific methyltransferase [Escherichia coli AA86]
          Length = 294

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 88/278 (31%), Positives = 137/278 (49%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II+G++++ L+KLPA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIQGDALTELKKLPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALINYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 238 KFIGIELNSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|170018495|ref|YP_001723449.1| putative methyltransferase [Escherichia coli ATCC 8739]
 gi|188492784|ref|ZP_03000054.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           53638]
 gi|194440031|ref|ZP_03072088.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           101-1]
 gi|253771908|ref|YP_003034739.1| methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254163197|ref|YP_003046305.1| putative methyltransferase [Escherichia coli B str. REL606]
 gi|300904456|ref|ZP_07122302.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 84-1]
 gi|300928703|ref|ZP_07144221.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 187-1]
 gi|301304271|ref|ZP_07210385.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 124-1]
 gi|312972469|ref|ZP_07786643.1| uncharacterized adenine-specific methylase yhdJ [Escherichia coli
           1827-70]
 gi|169753423|gb|ACA76122.1| DNA methylase N-4/N-6 domain protein [Escherichia coli ATCC 8739]
 gi|188487983|gb|EDU63086.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           53638]
 gi|194421035|gb|EDX37065.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           101-1]
 gi|242378796|emb|CAQ33588.1| DNA adenine methyltransferase [Escherichia coli BL21(DE3)]
 gi|253322952|gb|ACT27554.1| DNA methylase N-4/N-6 domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975098|gb|ACT40769.1| predicted methyltransferase [Escherichia coli B str. REL606]
 gi|253979254|gb|ACT44924.1| predicted methyltransferase [Escherichia coli BL21(DE3)]
 gi|300403618|gb|EFJ87156.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 84-1]
 gi|300463292|gb|EFK26785.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 187-1]
 gi|300840397|gb|EFK68157.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 124-1]
 gi|310334846|gb|EFQ01051.1| uncharacterized adenine-specific methylase yhdJ [Escherichia coli
           1827-70]
 gi|315257188|gb|EFU37156.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 85-1]
 gi|323941645|gb|EGB37824.1| DNA methylase [Escherichia coli E482]
 gi|323961090|gb|EGB56704.1| DNA methylase [Escherichia coli H489]
 gi|323970323|gb|EGB65593.1| DNA methylase [Escherichia coli TA007]
 gi|332345217|gb|AEE58551.1| adenine-specific methylase YhdJ [Escherichia coli UMNK88]
          Length = 294

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 88/281 (31%), Positives = 136/281 (48%), Gaps = 33/281 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
            FIGIE+  +YI +  +R+         EL  +  ++T  R
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNR 278


>gi|12517892|gb|AAG58390.1|AE005554_1 putative methyltransferase [Escherichia coli O157:H7 str. EDL933]
 gi|13363607|dbj|BAB37557.1| putative methyltransferase [Escherichia coli O157:H7 str. Sakai]
 gi|209757518|gb|ACI77071.1| putative methyltransferase [Escherichia coli]
 gi|209757520|gb|ACI77072.1| putative methyltransferase [Escherichia coli]
 gi|209757522|gb|ACI77073.1| putative methyltransferase [Escherichia coli]
 gi|209757526|gb|ACI77075.1| putative methyltransferase [Escherichia coli]
          Length = 296

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 87/278 (31%), Positives = 135/278 (48%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 18  TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 63

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 64  IDWLLEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 121

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 122 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 179

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 180 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 239

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 240 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 277


>gi|193071526|ref|ZP_03052436.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           E110019]
 gi|192955163|gb|EDV85656.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           E110019]
          Length = 294

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 88/281 (31%), Positives = 136/281 (48%), Gaps = 33/281 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
            FIGIE+  +YI +  +R+         EL  +  ++T  R
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNR 278


>gi|331664871|ref|ZP_08365776.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA143]
 gi|284923276|emb|CBG36370.1| putative DNA methylase [Escherichia coli 042]
 gi|331058119|gb|EGI30101.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA143]
          Length = 285

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 88/281 (31%), Positives = 138/281 (49%), Gaps = 33/281 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II+G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIQGDALTELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
            FIGIE+  +YI +  +R+         EL  +  ++T  R
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVTSHYSAEELAKVKKRKTGNR 278


>gi|300925993|ref|ZP_07141816.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 182-1]
 gi|301326296|ref|ZP_07219669.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 78-1]
 gi|300417937|gb|EFK01248.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 182-1]
 gi|300846997|gb|EFK74757.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 78-1]
          Length = 294

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 88/281 (31%), Positives = 136/281 (48%), Gaps = 33/281 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVSSGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
            FIGIE+  +YI +  +R+         EL  +  ++T  R
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNR 278


>gi|293416687|ref|ZP_06659326.1| adenine-specific DNA-methyltransferase [Escherichia coli B185]
 gi|331654860|ref|ZP_08355860.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M718]
 gi|291432043|gb|EFF05026.1| adenine-specific DNA-methyltransferase [Escherichia coli B185]
 gi|331048242|gb|EGI20319.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M718]
          Length = 296

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 87/278 (31%), Positives = 135/278 (48%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 18  TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 63

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 64  IDWLLEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 121

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 122 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 179

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 180 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVSSGR 239

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 240 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 277


>gi|38704155|ref|NP_312161.2| methyltransferase [Escherichia coli O157:H7 str. Sakai]
 gi|161367510|ref|NP_289830.2| putative methyltransferase [Escherichia coli O157:H7 EDL933]
 gi|168752562|ref|ZP_02777584.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4113]
 gi|168764877|ref|ZP_02789884.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4501]
 gi|168769125|ref|ZP_02794132.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4486]
 gi|168777678|ref|ZP_02802685.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4196]
 gi|168783831|ref|ZP_02808838.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4076]
 gi|168786155|ref|ZP_02811162.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC869]
 gi|168802604|ref|ZP_02827611.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC508]
 gi|195940006|ref|ZP_03085388.1| putative methyltransferase [Escherichia coli O157:H7 str. EC4024]
 gi|208807568|ref|ZP_03249905.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4206]
 gi|208812864|ref|ZP_03254193.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4045]
 gi|208819259|ref|ZP_03259579.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4042]
 gi|209400072|ref|YP_002272724.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4115]
 gi|217327970|ref|ZP_03444053.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. TW14588]
 gi|254795205|ref|YP_003080042.1| putative methyltransferase [Escherichia coli O157:H7 str. TW14359]
 gi|261228267|ref|ZP_05942548.1| predicted methyltransferase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255123|ref|ZP_05947656.1| predicted methyltransferase [Escherichia coli O157:H7 str. FRIK966]
 gi|291284629|ref|YP_003501447.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O55:H7 str. CB9615]
 gi|187767137|gb|EDU30981.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4196]
 gi|188013624|gb|EDU51746.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4113]
 gi|188998858|gb|EDU67844.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4076]
 gi|189361843|gb|EDU80262.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4486]
 gi|189365192|gb|EDU83608.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4501]
 gi|189373855|gb|EDU92271.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC869]
 gi|189375426|gb|EDU93842.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC508]
 gi|208727369|gb|EDZ76970.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4206]
 gi|208734141|gb|EDZ82828.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4045]
 gi|208739382|gb|EDZ87064.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4042]
 gi|209161472|gb|ACI38905.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. EC4115]
 gi|217320337|gb|EEC28762.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O157:H7 str. TW14588]
 gi|254594605|gb|ACT73966.1| predicted methyltransferase [Escherichia coli O157:H7 str. TW14359]
 gi|290764502|gb|ADD58463.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           O55:H7 str. CB9615]
 gi|320189609|gb|EFW64268.1| Adenine-specific methyltransferase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320645624|gb|EFX14633.1| putative methyltransferase [Escherichia coli O157:H- str. 493-89]
 gi|320650934|gb|EFX19391.1| putative methyltransferase [Escherichia coli O157:H- str. H 2687]
 gi|320656315|gb|EFX24227.1| putative methyltransferase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320662005|gb|EFX29413.1| putative methyltransferase [Escherichia coli O55:H7 str. USDA 5905]
 gi|326337957|gb|EGD61791.1| Adenine-specific methyltransferase [Escherichia coli O157:H7 str.
           1125]
 gi|326347526|gb|EGD71251.1| Adenine-specific methyltransferase [Escherichia coli O157:H7 str.
           1044]
          Length = 294

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 87/278 (31%), Positives = 135/278 (48%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLLEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|317013518|gb|ADU80954.1| M.HpyAIII, type II adenine methyltransferase [Helicobacter pylori
           Gambia94/24]
          Length = 274

 Score =  195 bits (497), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 102/255 (40%), Positives = 141/255 (55%), Gaps = 11/255 (4%)

Query: 13  QNSIFEWKDKI---IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
              IF+  D++    +G+   VL +    + DLIFADPPY L  +G L      +V    
Sbjct: 7   SRPIFKSTDRLFTLYQGDCNEVLPQFE-NAFDLIFADPPYFLSNDG-LSIQSGKIVSVNK 64

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
             WDK +     D F   W+   ++ LK  G+L + G+YHN+F +G +LQ L+F ILN I
Sbjct: 65  GDWDKENGINDIDEFNYQWINNAKKALKNTGSLLISGTYHNLFSLGRVLQKLDFKILNLI 124

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
            W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  P  
Sbjct: 125 TWQKTNPPPNFSCRYLTHSAEQIIWARKSRKHK-HVFNYEILKKINNDKQMRDVWNFPAI 183

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           +  E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FI
Sbjct: 184 APWEKANGK-----HPTQKPLALLVRLLLMASDDNSLIGDPFSGSSTTGIAANLLKREFI 238

Query: 250 GIEMKQDYIDIATKR 264
           GIE +  +I I+  R
Sbjct: 239 GIEKESGFIKISMNR 253


>gi|331674779|ref|ZP_08375538.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA280]
 gi|331068218|gb|EGI39614.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA280]
          Length = 296

 Score =  195 bits (497), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 87/278 (31%), Positives = 137/278 (49%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II+G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 18  TIIQGDALTELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 63

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 64  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 121

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 122 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 179

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 180 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAAASGR 239

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 240 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 277


>gi|323178558|gb|EFZ64134.1| hypothetical protein ECOK1180_2289 [Escherichia coli 1180]
          Length = 283

 Score =  195 bits (497), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 87/277 (31%), Positives = 135/277 (48%), Gaps = 33/277 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVSSGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            FIGIE+  +YI +  +R+         EL  +  +R
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKER 274


>gi|215488569|ref|YP_002331000.1| putative methyltransferase [Escherichia coli O127:H6 str. E2348/69]
 gi|312968407|ref|ZP_07782616.1| uncharacterized adenine-specific methylase yhdJ [Escherichia coli
           2362-75]
 gi|215266641|emb|CAS11080.1| predicted methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312286625|gb|EFR14536.1| uncharacterized adenine-specific methylase yhdJ [Escherichia coli
           2362-75]
          Length = 294

 Score =  195 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 87/278 (31%), Positives = 137/278 (49%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II+G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIQGDALTELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|218702035|ref|YP_002409664.1| putative methyltransferase [Escherichia coli IAI39]
 gi|300937389|ref|ZP_07152224.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 21-1]
 gi|218372021|emb|CAR19877.1| methyltransferase [Escherichia coli IAI39]
 gi|300457563|gb|EFK21056.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 21-1]
 gi|323189126|gb|EFZ74410.1| hypothetical protein ECRN5871_2725 [Escherichia coli RN587/1]
 gi|323979019|gb|EGB74097.1| DNA methylase [Escherichia coli TW10509]
          Length = 294

 Score =  195 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 87/278 (31%), Positives = 137/278 (49%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II+G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIQGDALTELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAAASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|331684902|ref|ZP_08385494.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H299]
 gi|331078517|gb|EGI49723.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H299]
          Length = 294

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 87/278 (31%), Positives = 137/278 (49%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II+G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIQGDALTELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|323966440|gb|EGB61874.1| DNA methylase [Escherichia coli M863]
 gi|327251356|gb|EGE63045.1| hypothetical protein ECSTEC7V_3896 [Escherichia coli STEC_7v]
          Length = 294

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 87/278 (31%), Positives = 137/278 (49%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II+G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIQGDALTELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAAASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVTSHYSAEELAKVKKRKT 275


>gi|323946891|gb|EGB42907.1| DNA methylase [Escherichia coli H120]
          Length = 294

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 86/278 (30%), Positives = 135/278 (48%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ P DI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPSDIVLDPFAGSFTTGAVAVSSGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|331643962|ref|ZP_08345093.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H736]
 gi|606203|gb|AAA58066.1| ORF_o296 [Escherichia coli str. K-12 substr. MG1655]
 gi|331037433|gb|EGI09657.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H736]
          Length = 296

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 87/278 (31%), Positives = 136/278 (48%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 18  TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 63

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 64  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 121

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 122 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 179

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 180 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 239

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 240 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 277


>gi|300958256|ref|ZP_07170403.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 175-1]
 gi|300315074|gb|EFJ64858.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 175-1]
          Length = 294

 Score =  195 bits (496), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 87/278 (31%), Positives = 136/278 (48%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRMRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|254038426|ref|ZP_04872484.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|226840050|gb|EEH72071.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
          Length = 294

 Score =  195 bits (496), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 86/278 (30%), Positives = 135/278 (48%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ P DI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPADIVLDPFAGSFTTGAVAIASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|331679335|ref|ZP_08380007.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H591]
 gi|332279906|ref|ZP_08392319.1| conserved hypothetical protein [Shigella sp. D9]
 gi|331073400|gb|EGI44723.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H591]
 gi|332102258|gb|EGJ05604.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 296

 Score =  195 bits (496), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 87/278 (31%), Positives = 136/278 (48%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 18  TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 63

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 64  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 121

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 122 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 179

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 180 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVSSGR 239

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 240 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 277


>gi|89110022|ref|AP_003802.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
           W3110]
 gi|90111566|ref|NP_417728.4| DNA adenine methyltransferase, SAM-dependent [Escherichia coli str.
           K-12 substr. MG1655]
 gi|170082790|ref|YP_001732110.1| methyltransferase [Escherichia coli str. K-12 substr. DH10B]
 gi|238902361|ref|YP_002928157.1| putative methyltransferase [Escherichia coli BW2952]
 gi|256024164|ref|ZP_05438029.1| putative methyltransferase [Escherichia sp. 4_1_40B]
 gi|300948348|ref|ZP_07162456.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 116-1]
 gi|301028293|ref|ZP_07191553.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 196-1]
 gi|301647038|ref|ZP_07246870.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 146-1]
 gi|307139950|ref|ZP_07499306.1| putative methyltransferase [Escherichia coli H736]
 gi|3915983|sp|P28638|YHDJ_ECOLI RecName: Full=DNA adenine methyltransferase YhdJ
 gi|85676053|dbj|BAE77303.1| predicted methyltransferase [Escherichia coli str. K12 substr.
           W3110]
 gi|87082238|gb|AAC76294.2| DNA adenine methyltransferase, SAM-dependent [Escherichia coli str.
           K-12 substr. MG1655]
 gi|169890625|gb|ACB04332.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238862670|gb|ACR64668.1| predicted methyltransferase [Escherichia coli BW2952]
 gi|260447711|gb|ACX38133.1| DNA methylase N-4/N-6 domain protein [Escherichia coli DH1]
 gi|299878636|gb|EFI86847.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 196-1]
 gi|300452137|gb|EFK15757.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 116-1]
 gi|301074788|gb|EFK89594.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 146-1]
 gi|309703681|emb|CBJ03022.1| putative DNA methylase [Escherichia coli ETEC H10407]
 gi|315137845|dbj|BAJ45004.1| putative methyltransferase [Escherichia coli DH1]
 gi|315617071|gb|EFU97681.1| uncharacterized adenine-specific methylase yhdJ [Escherichia coli
           3431]
 gi|323936255|gb|EGB32547.1| DNA methylase [Escherichia coli E1520]
          Length = 294

 Score =  195 bits (496), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 87/278 (31%), Positives = 136/278 (48%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|293449585|ref|ZP_06664006.1| adenine-specific DNA-methyltransferase [Escherichia coli B088]
 gi|291322675|gb|EFE62104.1| adenine-specific DNA-methyltransferase [Escherichia coli B088]
          Length = 296

 Score =  195 bits (496), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 87/278 (31%), Positives = 135/278 (48%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 18  TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 63

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 64  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 121

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 122 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 179

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 180 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVSSGR 239

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 240 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 277


>gi|218555826|ref|YP_002388739.1| putative methyltransferase [Escherichia coli IAI1]
 gi|218362594|emb|CAR00219.1| methyltransferase [Escherichia coli IAI1]
          Length = 294

 Score =  195 bits (496), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 87/278 (31%), Positives = 135/278 (48%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+SVDLIFADPPYN+  N           D + + W +    + +
Sbjct: 16  TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEDWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVSSGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|307636783|gb|ADN79233.1| type II DNA modification enzyme /methyl transferase [Helicobacter
           pylori 908]
 gi|325996968|gb|ADZ49176.1| Type II adenine methyltransferase [Helicobacter pylori 2017]
          Length = 281

 Score =  195 bits (496), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 101/253 (39%), Positives = 141/253 (55%), Gaps = 11/253 (4%)

Query: 15  SIFEWKDKI---IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
            IF+  D++    +G+   VL +    + DLIFADPPY L  +G L      ++      
Sbjct: 9   PIFKSTDRLFTLYQGDCNEVLPQFE-NAFDLIFADPPYFLSNDG-LSIQSGKIMSVNKGD 66

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           WDK +     D F   W+   ++ LK  G+L + G+YHN+F +G +LQ L+F ILN I W
Sbjct: 67  WDKENGINDIDEFNYQWINNAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKILNLITW 126

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
           +K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  P  + 
Sbjct: 127 QKTNPPPNFSCRYLTHSAEQIIWARKSRKHK-HVFNYEILKKINNDKQMRDVWSFPAIAP 185

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
            E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGI
Sbjct: 186 WEKANGK-----HPTQKPLALLVRLLLMASDDNSLIGDPFSGSSTTGIAANLLKREFIGI 240

Query: 252 EMKQDYIDIATKR 264
           E +  +I I+  R
Sbjct: 241 EKESGFIKISMNR 253


>gi|33337335|gb|AAQ13335.1| HpyIIIM protein [Helicobacter pylori]
          Length = 273

 Score =  195 bits (496), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 102/255 (40%), Positives = 140/255 (54%), Gaps = 11/255 (4%)

Query: 13  QNSIFEWKDKI---IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
              IF+ +D++    +G+   VL +      DLIFADPPY L  +G L      +V    
Sbjct: 7   SRPIFKSQDQLFTLYQGDCNEVLPQFE-NRFDLIFADPPYFLSNDG-LSIQSGKIVSVNK 64

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
             WDK       D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F ILN I
Sbjct: 65  GDWDKEEGVNGIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRLLQKLDFKILNLI 124

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
            W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  P  
Sbjct: 125 TWQKTNPPPNFSCRYLTHSAEQIIWARKSYKHK-HVFNYEVLKKINNDKQMRDVWSFPAI 183

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           +  E++  K     HPTQKP ALL R+L+ ++    +I DPF  S T+G  A  L+R FI
Sbjct: 184 APWEKVNGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSWSSTTGIAANLLKREFI 238

Query: 250 GIEMKQDYIDIATKR 264
           GIE +  +I I+  R
Sbjct: 239 GIEKESGFIKISMDR 253


>gi|191169151|ref|ZP_03030909.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           B7A]
 gi|209920734|ref|YP_002294818.1| putative methyltransferase [Escherichia coli SE11]
 gi|256018824|ref|ZP_05432689.1| putative methyltransferase [Shigella sp. D9]
 gi|260846067|ref|YP_003223845.1| putative methyltransferase [Escherichia coli O103:H2 str. 12009]
 gi|260857389|ref|YP_003231280.1| putative methyltransferase [Escherichia coli O26:H11 str. 11368]
 gi|260870013|ref|YP_003236415.1| putative methyltransferase [Escherichia coli O111:H- str. 11128]
 gi|300824974|ref|ZP_07105073.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 119-7]
 gi|307314981|ref|ZP_07594569.1| DNA methylase N-4/N-6 domain protein [Escherichia coli W]
 gi|309793841|ref|ZP_07688267.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 145-7]
 gi|331670086|ref|ZP_08370931.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA271]
 gi|190900793|gb|EDV60584.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           B7A]
 gi|209913993|dbj|BAG79067.1| putative methyltransferase [Escherichia coli SE11]
 gi|257756038|dbj|BAI27540.1| predicted methyltransferase [Escherichia coli O26:H11 str. 11368]
 gi|257761214|dbj|BAI32711.1| predicted methyltransferase [Escherichia coli O103:H2 str. 12009]
 gi|257766369|dbj|BAI37864.1| predicted methyltransferase [Escherichia coli O111:H- str. 11128]
 gi|300522540|gb|EFK43609.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 119-7]
 gi|306905564|gb|EFN36096.1| DNA methylase N-4/N-6 domain protein [Escherichia coli W]
 gi|308122798|gb|EFO60060.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 145-7]
 gi|315062561|gb|ADT76888.1| predicted methyltransferase [Escherichia coli W]
 gi|320181533|gb|EFW56451.1| Adenine-specific methyltransferase [Shigella boydii ATCC 9905]
 gi|323154481|gb|EFZ40682.1| hypothetical protein ECEPECA14_3785 [Escherichia coli EPECa14]
 gi|323183021|gb|EFZ68420.1| hypothetical protein ECOK1357_3629 [Escherichia coli 1357]
 gi|323376852|gb|ADX49120.1| DNA methylase N-4/N-6 domain protein [Escherichia coli KO11]
 gi|324020744|gb|EGB89963.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 117-3]
 gi|324119442|gb|EGC13325.1| DNA methylase [Escherichia coli E1167]
 gi|331062999|gb|EGI34913.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA271]
          Length = 294

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 87/278 (31%), Positives = 136/278 (48%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVSSGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|73857268|gb|AAZ89975.1| putative methyltransferase [Shigella sonnei Ss046]
          Length = 296

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 87/278 (31%), Positives = 136/278 (48%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 18  TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 63

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    ++ C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 64  IDWLFEVIVECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 121

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 122 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 179

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 180 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 239

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 240 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 277


>gi|325995371|gb|ADZ50776.1| Type II DNA modification enzyme/methyl transferase [Helicobacter
           pylori 2018]
          Length = 281

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 101/253 (39%), Positives = 141/253 (55%), Gaps = 11/253 (4%)

Query: 15  SIFEWKDKI---IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
            IF+  D++    +G+   VL +    + DLIFADPPY L  +G L      ++      
Sbjct: 9   PIFKSTDRLFTLYQGDCNEVLPQFE-NAFDLIFADPPYFLSNDG-LSIQSGKIMSVNKGD 66

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           WDK +     D F   W+   ++ LK  G+L + G+YHN+F +G +LQ L+F ILN I W
Sbjct: 67  WDKENGINDIDEFNYQWINNAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKILNLITW 126

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
           +K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  P  + 
Sbjct: 127 QKTNPPPNFTCRYLTHSAEQIIWARKSRKHK-HVFNYEILKKINNDKQMRDVWSFPAIAP 185

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
            E+   K     HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGI
Sbjct: 186 WEKANGK-----HPTQKPLALLVRLLLMASDDNSLIGDPFSGSSTTGIAANLLKREFIGI 240

Query: 252 EMKQDYIDIATKR 264
           E +  +I I+  R
Sbjct: 241 EKESGFIKISMNR 253


>gi|308182268|ref|YP_003926395.1| type II adenine methyltransferase [Helicobacter pylori PeCan4]
 gi|308064453|gb|ADO06345.1| type II adenine methyltransferase [Helicobacter pylori PeCan4]
          Length = 273

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 99/243 (40%), Positives = 136/243 (55%), Gaps = 8/243 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + +G+   VL +    + DLIFADPPY L  +G L      +V      WDK +     
Sbjct: 19  TLYQGDCNEVLPQFE-NAFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKENGINDI 76

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   W+   ++ LK  G+L + G+YHN+F +G +LQ L+F ILN I W+K+NP PNF 
Sbjct: 77  DEFNYQWINNAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKILNLITWQKTNPPPNFS 136

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W  P  +  E+   K   
Sbjct: 137 CRYLTHSAEQIIWARKSRKHK-HVFNYEVLKKINNDKQMRDVWSFPAIAPWEKTNGK--- 192

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE +  +I I+
Sbjct: 193 --HPTQKPLALLVRLLLMASDDNSLIGDPFSGSSTTGIAANLLKREFIGIEKESGFIKIS 250

Query: 262 TKR 264
             R
Sbjct: 251 MNR 253


>gi|161986434|ref|YP_312210.2| putative methyltransferase [Shigella sonnei Ss046]
 gi|323165223|gb|EFZ51013.1| hypothetical protein SS53G_4688 [Shigella sonnei 53G]
          Length = 294

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 87/278 (31%), Positives = 136/278 (48%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    ++ C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIVECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|325498841|gb|EGC96700.1| methyltransferase [Escherichia fergusonii ECD227]
          Length = 294

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 94/295 (31%), Positives = 145/295 (49%), Gaps = 34/295 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +II G+++S L+KLP++SVDLIFADPPYN+  N           D + +SWD       +
Sbjct: 18  RIIHGDALSELKKLPSESVDLIFADPPYNIGKN----------FDGLVESWDD----ADF 63

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            ++    +  C RVLK  G+++++ S  N+  I    + L F I + I+W   +      
Sbjct: 64  RSWLFEIIAECHRVLKKQGSMYIMNSTENMPWIDLECRKL-FTIKSRIIWAYDSSGVQ-A 121

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED------VQMRSDWLIPI------- 188
            + F + +E ++       AK YTFN DA+    +       +  R +   P        
Sbjct: 122 KKYFGSMYEPILMMVKD--AKNYTFNSDAILVEAKTGAKRALIDYRKNPPQPYNSQKVPG 179

Query: 189 --CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                S      D  + HPTQKP ALL RI+++S+ PGDI+LDPF GS T+G VA +  R
Sbjct: 180 NVWEFSRVRYLMDEYENHPTQKPVALLKRIILASSCPGDIVLDPFAGSFTTGKVAVETGR 239

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP 301
            FIGIE+  +Y+ +  +R+ +V    + E      KR     +      RG + P
Sbjct: 240 RFIGIEVNCEYVKMGLRRL-NVDSHFSAEELAKVKKRKTRNQSKKSQNSRGSLLP 293


>gi|227431774|ref|ZP_03913801.1| adenine-specific methyltransferase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|227352457|gb|EEJ42656.1| adenine-specific methyltransferase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 231

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 80/250 (32%), Positives = 123/250 (49%), Gaps = 22/250 (8%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+I GN++  L  +P  S+DLI  DPPYN+         + + +D     WDK +     
Sbjct: 2   KLINGNNLDALSDIPDNSIDLILTDPPYNISRKNNFESLNRAGIDF--GDWDKNAD---- 55

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                 W+    R++K   ++ +  ++ N+  I   L+   F + + I W K+NPMP  R
Sbjct: 56  ---LLTWIDKVPRIVKKGASIIIFNAWRNLGDIAERLEKNGFVVKDIIRWEKTNPMPRNR 112

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            RR+   +E  IWA    K   + FN  +      +   RS+  +PI   +E++      
Sbjct: 113 DRRYIVDYEFAIWAV--EKHNKWIFNRQS------NKYDRSEIRVPITGKAEKILGS--- 161

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP  L+  +L+  +   DI+LDPF GSG++G   + L R FIGIE+ + Y  IA
Sbjct: 162 --HPTQKPIKLMEELLLRHSNENDIVLDPFMGSGSTGVACRNLNREFIGIELDETYFKIA 219

Query: 262 TKRIASVQPL 271
             RI   Q L
Sbjct: 220 ENRIREAQTL 229


>gi|218706876|ref|YP_002414395.1| putative methyltransferase [Escherichia coli UMN026]
 gi|293406864|ref|ZP_06650790.1| methyltransferase [Escherichia coli FVEC1412]
 gi|298382605|ref|ZP_06992202.1| adenine-specific DNA-methyltransferase [Escherichia coli FVEC1302]
 gi|300898034|ref|ZP_07116405.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 198-1]
 gi|218433973|emb|CAR14890.1| methyltransferase [Escherichia coli UMN026]
 gi|291426870|gb|EFE99902.1| methyltransferase [Escherichia coli FVEC1412]
 gi|298277745|gb|EFI19261.1| adenine-specific DNA-methyltransferase [Escherichia coli FVEC1302]
 gi|300358253|gb|EFJ74123.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 198-1]
          Length = 294

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 88/278 (31%), Positives = 136/278 (48%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II+G++++ L+KLPA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIQGDALTELKKLPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI++ S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILGSSNPGDIVLDPFAGSFTTGAVAVASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|315289031|gb|EFU48429.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 110-3]
          Length = 294

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 87/278 (31%), Positives = 136/278 (48%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II+G++++ L+ LPA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIQGDALTELKNLPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALINYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|193066458|ref|ZP_03047503.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           E22]
 gi|192925887|gb|EDV80536.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           E22]
          Length = 294

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 87/278 (31%), Positives = 136/278 (48%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSTPGDIVLDPFAGSFTTGAVAVSSGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|194430238|ref|ZP_03062735.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           B171]
 gi|194411709|gb|EDX28034.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           B171]
          Length = 294

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 86/278 (30%), Positives = 135/278 (48%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPE LL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEVLLKRIILASSNPGDIVLDPFAGSFTTGAVAVSSGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|323162947|gb|EFZ48782.1| hypothetical protein ECE128010_0909 [Escherichia coli E128010]
          Length = 294

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 86/278 (30%), Positives = 135/278 (48%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPE LL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEVLLKRIILASSNPGDIVLDPFAGSFTTGAVAVSCGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|324115134|gb|EGC09098.1| DNA methylase [Escherichia fergusonii B253]
          Length = 292

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 94/295 (31%), Positives = 145/295 (49%), Gaps = 34/295 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +II G+++S L+KLP++SVDLIFADPPYN+  N           D + +SWD       +
Sbjct: 16  RIIHGDALSELKKLPSESVDLIFADPPYNIGKN----------FDGLVESWDD----ADF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            ++    +  C RVLK  G+++++ S  N+  I    + L F I + I+W   +      
Sbjct: 62  RSWLFEIIAECHRVLKKQGSMYIMNSTENMPWIDLECRKL-FTIKSRIIWAYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED------VQMRSDWLIPI------- 188
            + F + +E ++       AK YTFN DA+    +       +  R +   P        
Sbjct: 120 KKYFGSMYEPILMMVKD--AKNYTFNSDAILVEAKTGAKRALIDYRKNPPQPYNSQKVPG 177

Query: 189 --CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                S      D  + HPTQKP ALL RI+++S+ PGDI+LDPF GS T+G VA +  R
Sbjct: 178 NVWEFSRVRYLMDEYENHPTQKPVALLKRIILASSCPGDIVLDPFAGSFTTGEVAVETGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP 301
            FIGIE+  +Y+ +  +R+ +V    + E      KR     +      RG + P
Sbjct: 238 RFIGIEVNCEYVKMGLRRL-NVDSHFSAEELAKVKKRKTRNQSKKSQNSRGSLLP 291


>gi|170680849|ref|YP_001745533.1| putative methyltransferase [Escherichia coli SMS-3-5]
 gi|170518567|gb|ACB16745.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           SMS-3-5]
          Length = 294

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 87/278 (31%), Positives = 136/278 (48%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II+G++++ L+K+PA SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIQGDALTELKKIPADSVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAAASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|167631056|ref|YP_001681555.1| DNA methylase [Heliobacterium modesticaldum Ice1]
 gi|167593796|gb|ABZ85544.1| DNA methylase [Heliobacterium modesticaldum Ice1]
          Length = 304

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 86/269 (31%), Positives = 132/269 (49%), Gaps = 36/269 (13%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+I  G+++  + +LPA+SVDLIFADPPY   L         S         + + + E 
Sbjct: 45  DRIYCGDALVGMSRLPARSVDLIFADPPYF-GLKKDFGSGKRS---------NPWKTIEE 94

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +TRAW     R+LKP+G ++V   +    R+  ML +  F +LN I WR+       
Sbjct: 95  YMEWTRAWFAEAARLLKPHGAIYVCCDWEYSGRVQEMLSDS-FDVLNRITWRREKGRGAA 153

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE-------DVQMRSDWLIPICSGSE 193
           +   ++N  E + +A     ++ Y FN + +K   E             DW+        
Sbjct: 154 KN--WKNNMEDIWFAVVD--SRQYIFNLEDVKFRKEIIAPYTTTDGKPKDWVETETGERF 209

Query: 194 RL--------------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
           R+               +      HPTQKPE L+ R +++S+ PG ++LDPF GSGT+ A
Sbjct: 210 RMTCPPNIWTDLTVPFWSMPENTPHPTQKPEKLVERCILASSNPGALVLDPFMGSGTTAA 269

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           VA++L R FIG E  +DY+ +A KR+  V
Sbjct: 270 VARRLGRHFIGFETNEDYVRLAMKRLDRV 298


>gi|209757524|gb|ACI77074.1| putative methyltransferase [Escherichia coli]
          Length = 296

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 88/278 (31%), Positives = 135/278 (48%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II GN+++ L+KLP +SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 18  TIIHGNALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 63

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 64  IDWLLEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 121

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 122 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 179

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 180 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 239

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 240 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 277


>gi|218550546|ref|YP_002384337.1| methyltransferase [Escherichia fergusonii ATCC 35469]
 gi|218358087|emb|CAQ90733.1| methyltransferase [Escherichia fergusonii ATCC 35469]
          Length = 299

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 94/295 (31%), Positives = 145/295 (49%), Gaps = 34/295 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +II G+++S L+KLP++SVDLIFADPPYN+  N           D + +SWD       +
Sbjct: 23  RIIHGDALSELKKLPSESVDLIFADPPYNIGKN----------FDGLVESWDD----ADF 68

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            ++    +  C RVLK  G+++++ S  N+  I    + L F I + I+W   +      
Sbjct: 69  RSWLFEIIAECHRVLKKQGSMYIMNSTENMPWIDLECRKL-FTIKSRIIWAYDSSGVQ-A 126

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED------VQMRSDWLIPI------- 188
            + F + +E ++       AK YTFN DA+    +       +  R +   P        
Sbjct: 127 KKYFGSMYEPILMMVKD--AKNYTFNSDAILVEAKTGAKRALIDYRKNPPQPYNSQKVPG 184

Query: 189 --CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                S      D  + HPTQKP ALL RI+++S+ PGDI+LDPF GS T+G VA +  R
Sbjct: 185 NVWEFSRVRYLMDEYENHPTQKPVALLKRIILASSCPGDIVLDPFAGSFTTGEVAVETGR 244

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP 301
            FIGIE+  +Y+ +  +R+ +V    + E      KR     +      RG + P
Sbjct: 245 RFIGIEVNCEYVKMGLRRL-NVDSHFSAEELAKVKKRKTRNQSKKSQNSRGSLLP 298


>gi|157157471|ref|YP_001464736.1| putative methyltransferase [Escherichia coli E24377A]
 gi|157079501|gb|ABV19209.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
           E24377A]
          Length = 294

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 87/281 (30%), Positives = 136/281 (48%), Gaps = 33/281 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPT+KPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTRKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVSSGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
            FIGIE+  +YI +  +R+         EL  +  ++T  R
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNR 278


>gi|187732784|ref|YP_001881954.1| putative methyltransferase [Shigella boydii CDC 3083-94]
 gi|187429776|gb|ACD09050.1| DNA methylase, N4/N6-methyltransferase family [Shigella boydii CDC
           3083-94]
 gi|320177101|gb|EFW52117.1| Adenine-specific methyltransferase [Shigella dysenteriae CDC
           74-1112]
 gi|320184070|gb|EFW58890.1| Adenine-specific methyltransferase [Shigella flexneri CDC 796-83]
          Length = 294

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 86/278 (30%), Positives = 136/278 (48%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + ++ ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYDPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVSSGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|332087253|gb|EGI92386.1| hypothetical protein SB521682_3384 [Shigella boydii 5216-82]
          Length = 294

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 87/278 (31%), Positives = 135/278 (48%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVSSGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE   +YI +  +R+         EL  +  ++T
Sbjct: 238 KFIGIESNSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|332098818|gb|EGJ03775.1| hypothetical protein SB359474_0136 [Shigella boydii 3594-74]
          Length = 283

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 87/277 (31%), Positives = 135/277 (48%), Gaps = 33/277 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + ++ ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYDPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDIILDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIILDPFAGSFTTGAVAVSSGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            FIGIE+  +YI +  +R+         EL  +  +R
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKER 274


>gi|300917417|ref|ZP_07134082.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 115-1]
 gi|300415327|gb|EFJ98637.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 115-1]
          Length = 294

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 87/281 (30%), Positives = 135/281 (48%), Gaps = 33/281 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HP QKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPKQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
            FIGIE+  +YI +  +R+         EL  +  ++T  R
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNR 278


>gi|81247044|gb|ABB67752.1| putative methyltransferase [Shigella boydii Sb227]
          Length = 296

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 87/278 (31%), Positives = 136/278 (48%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 18  TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 63

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 64  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 121

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + ++ ++       AK YTFN DA+    +                         
Sbjct: 122 KKHYGSMYDPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 179

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDIILDPF GS T+GAVA    R
Sbjct: 180 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIILDPFAGSFTTGAVAVSSGR 239

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 240 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 277


>gi|161984845|ref|YP_409580.2| methyltransferase [Shigella boydii Sb227]
          Length = 294

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 87/278 (31%), Positives = 136/278 (48%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + ++ ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYDPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDIILDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIILDPFAGSFTTGAVAVSSGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|266582|sp|P29538|MTH1_HAEPA RecName: Full=Modification methylase HpaI; Short=M.HpaI; AltName:
           Full=Adenine-specific methyltransferase HpaI
 gi|216715|dbj|BAA01519.1| HpaI methyltransferase [Haemophilus parainfluenzae]
          Length = 314

 Score =  192 bits (488), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 79/249 (31%), Positives = 120/249 (48%), Gaps = 19/249 (7%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I  N+I  L+ L   S+DLI  DPPYNL  +                  D   +F  Y
Sbjct: 4   RLICSNAIKALKNLEENSIDLIITDPPYNLGKDYGTT--------------DDNLNFNKY 49

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML-QNLNFWILNDIVWRKSNPMPNF 140
             F+  WL  C RVLKP+GT+++      I  I  +L Q+L  +  + I W  +  +   
Sbjct: 50  LEFSHEWLEECYRVLKPHGTIYIFMGMKYISYIYKILEQDLGMYFNSWITWYYTQGIGKT 109

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP--ICSGSERLRNK 198
           RG   +  H+ ++  +  PK   +  +   +               P  +   S      
Sbjct: 110 RGYSPR--HDDILMFTKHPKKFTFNLDRIRVPQKYYRSVNNMRGANPSNVWEFSHVHYCN 167

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
              K HPTQKPEAL  R++++S+  GDI+LDPF GSGT   V K L RS IGI++ ++YI
Sbjct: 168 KNRKPHPTQKPEALYERMILASSNEGDIVLDPFVGSGTLNFVCKHLNRSGIGIDINKEYI 227

Query: 259 DIATKRIAS 267
           ++A +R+ S
Sbjct: 228 EMAKERLDS 236


>gi|20177971|sp|Q45489|MTB2_BACSU RecName: Full=Modification methylase BglII; Short=M.BglII; AltName:
           Full=N(4)- cytosine-specific methyltransferase BglII
 gi|1293620|gb|AAC45061.1| BglII modification methylase [Bacillus subtilis]
          Length = 360

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 90/333 (27%), Positives = 148/333 (44%), Gaps = 49/333 (14%)

Query: 1   MSQKNSLAINENQNSIFE-WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR 59
           M   N    N   +S  +   +KI  G+++++L  +P  SVDL+   PPYN+       R
Sbjct: 15  MEDDNEDLPNHIPSSFPKQHLNKIYNGDTMNMLLDIPDNSVDLVVTSPPYNINKFKNDRR 74

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNI------- 111
           P                  E Y  +    +  C RVLKP+G++ W +G+Y N        
Sbjct: 75  P-----------------LEEYLKWQTEIIEQCHRVLKPSGSIFWQVGTYVNDSGAHIPL 117

Query: 112 -FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
             R   + ++L  +  N IVW + + +     ++F   HET++W + +P+ K +      
Sbjct: 118 DIRFFPIFESLGMFPRNRIVWVRPHGL--HANKKFAGRHETILWFTKTPEYKFFLDPIRV 175

Query: 171 LKAANEDVQMRSDWLI------------PICSGSERLRNKDGEKLHPTQKPEALLSRILV 218
            +        + D                + +      N + + +HPTQ PE ++ RI++
Sbjct: 176 PQKYANKKHYKGDKKGELSGDPLGKNPGDVWAFRNVRHNHEEDTIHPTQYPEDMIERIVL 235

Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278
           S+T+P DI+LDPF G GT+ +VAK L R F G E++++Y+DIA + I S +P  N     
Sbjct: 236 STTEPNDIVLDPFIGMGTTASVAKNLNRYFYGAEIEKEYVDIAYQ-ILSGEPDENNNFPN 294

Query: 279 LTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
           L   R           + G+I P Q     Q  
Sbjct: 295 LKTLR-------QYCEKNGIIDPSQYTFTRQRK 320


>gi|333014708|gb|EGK34054.1| hypothetical protein SFK227_3919 [Shigella flexneri K-227]
          Length = 283

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 85/277 (30%), Positives = 134/277 (48%), Gaps = 33/277 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+KLP +SVDL+FADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKLPTESVDLLFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKP+ALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPKALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            FIGIE+  +YI +  +R+         EL  +  +R
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKER 274


>gi|329914377|ref|ZP_08276110.1| putative DNA-methyltransferase (DNA-modification methylase)
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327545139|gb|EGF30424.1| putative DNA-methyltransferase (DNA-modification methylase)
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 258

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 75/273 (27%), Positives = 134/273 (49%), Gaps = 33/273 (12%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           +W++++   ++++ L ++P   +DLI ADPPY L  +               +  DK ++
Sbjct: 3   DWQNQVFCEDALAGLARIPDGVIDLILADPPYGLGKDY-------------GNDSDKLAT 49

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E Y A+   W+ A    LKPNG+L++  ++     I  +L+     ++N+IVW +  P 
Sbjct: 50  AE-YLAWMERWIDAALPKLKPNGSLYIFLTWRYSPEIFVLLKQ-RMTMVNEIVWDRRVPS 107

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS---------DWL--- 185
                R++ + H+T+ + +    +K Y F+ DA++   + V  ++          WL   
Sbjct: 108 MGGTVRKYSSVHDTIGFFA---NSKDYYFDLDAIRIPYDAVTKKARSRSIFVGAKWLELG 164

Query: 186 ---IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
                + S S   R       HPTQKP  ++ R++ +S  PG I+LDPF GSGT+   AK
Sbjct: 165 YNPKDVWSVSRLHREHRERADHPTQKPLEIIERMVKASCPPGGIVLDPFMGSGTTAVAAK 224

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           +  R F+G E+  DY  +  +R+A +     + 
Sbjct: 225 RAGRQFVGFELNADYCAMIAQRLAQLDTDAQVA 257


>gi|332999339|gb|EGK18925.1| hypothetical protein SFK272_4070 [Shigella flexneri K-272]
          Length = 294

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 85/278 (30%), Positives = 135/278 (48%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+KLP +SVDL+FADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKLPTESVDLLFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKP+ALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPKALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|320666839|gb|EFX33818.1| putative methyltransferase [Escherichia coli O157:H7 str. LSU-61]
          Length = 294

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 91/283 (32%), Positives = 138/283 (48%), Gaps = 43/283 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLLEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------------LKAANEDVQMR 181
            + + + +E ++       AK YTFN DA                     +  N      
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
           + W  P      R    + E L PTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 178 NVWDFPRV----RYLMDEYENL-PTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVA 232

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
               R FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 233 IASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|332998382|gb|EGK17981.1| hypothetical protein SFVA6_4185 [Shigella flexneri VA-6]
          Length = 294

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 85/278 (30%), Positives = 135/278 (48%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+KLP +SVDL+FADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKLPTESVDLLFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIYYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKP+ALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPKALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|311070542|ref|YP_003975465.1| DNA methylase N-4/N-6 domain-containing protein [Bacillus
           atrophaeus 1942]
 gi|310871059|gb|ADP34534.1| DNA methylase N-4/N-6 domain-containing protein [Bacillus
           atrophaeus 1942]
          Length = 360

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 90/333 (27%), Positives = 148/333 (44%), Gaps = 49/333 (14%)

Query: 1   MSQKNSLAINENQNSIFE-WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR 59
           M   N    N   +S  +   +KI  G+++++L  +P  SVDL+   PPYN+       R
Sbjct: 15  MEDDNEDLPNHIPSSFPKQHLNKIYNGDTMNMLLDIPDNSVDLVVTSPPYNINKFKNDRR 74

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNI------- 111
           P                  E Y  +    +  C RVLKP+G++ W +G+Y N        
Sbjct: 75  P-----------------LEEYLKWQTEIIEQCHRVLKPSGSIFWQVGTYVNDSGAHIPL 117

Query: 112 -FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
             R   + ++L  +  N IVW + + +     ++F   HET++W + +P+ K +      
Sbjct: 118 DIRFFPIFESLGMFPRNRIVWVRPHGL--HANKKFAGRHETILWFTKTPEYKFFLDPIRV 175

Query: 171 LKAANEDVQMRSDWLI------------PICSGSERLRNKDGEKLHPTQKPEALLSRILV 218
            +        + D                + +      N + + +HPTQ PE ++ RI++
Sbjct: 176 PQKYANKKHYKGDKKGELSGDPLGKNPGDVWAFRNVRHNHEEDTIHPTQYPEDMIERIVL 235

Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278
           S+T+P DI+LDPF G GT+ +VAK L R F G E++++Y+DIA + I S +P  N     
Sbjct: 236 STTEPNDIVLDPFIGMGTTASVAKNLNRYFCGAEIEKEYVDIAYQ-ILSGEPDENNNFPN 294

Query: 279 LTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
           L   R           + G+I P Q     Q  
Sbjct: 295 LKTLR-------QYCEKNGIIDPSQYTFTRQRK 320


>gi|300817483|ref|ZP_07097699.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 107-1]
 gi|300529781|gb|EFK50843.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 107-1]
          Length = 294

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 86/278 (30%), Positives = 135/278 (48%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+S DLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKIPAESDDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVSSGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|332752465|gb|EGJ82854.1| hypothetical protein SFK671_3912 [Shigella flexneri K-671]
          Length = 283

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 85/277 (30%), Positives = 133/277 (48%), Gaps = 33/277 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++ + L+KLP +SVDL+FADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDAFAELKKLPTESVDLLFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKP+ALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPKALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            FIGIE+  +YI +  +R+         EL  +  +R
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKER 274


>gi|283788096|ref|YP_003367961.1| DNA methylase [Citrobacter rodentium ICC168]
 gi|282951550|emb|CBG91249.1| putative DNA methylase [Citrobacter rodentium ICC168]
          Length = 291

 Score =  189 bits (481), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 89/277 (32%), Positives = 138/277 (49%), Gaps = 33/277 (11%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II G++++ L+KLPA+SVDLIFADPPYN+  +           D + +SWD+      + 
Sbjct: 17  IILGDALNELKKLPAESVDLIFADPPYNIGKD----------FDGMIESWDE----NVFL 62

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            +  A +  C RVLK  GT++++ S  N+  I    + L F I + IVW   +       
Sbjct: 63  TWLFACIDECHRVLKKQGTMYIMNSTENMPHIDLKCRGL-FTIKSRIVWSYDSSGVQ-AK 120

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANED------VQMRSDWLIPI-------- 188
           + F + +E ++       AK YTFN +++    +       +  R +   P         
Sbjct: 121 KFFGSMYEPILMMVKD--AKHYTFNRESILVETKTGAKRALIDYRKNPPQPYNTQKVPGN 178

Query: 189 -CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                      D  + HPTQKP ALL RI+++S+ PGD +LDPF GS T+GAVA    R 
Sbjct: 179 VWEFPRVRYLMDEYENHPTQKPMALLQRIVLASSNPGDTVLDPFAGSFTTGAVAVAAGRK 238

Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
           FIGIE+  +Y+ +  +R+         EL  +  ++T
Sbjct: 239 FIGIEINTEYVKMGLRRMRVSSHFTTDELAKVKKRKT 275


>gi|30064593|ref|NP_838764.1| putative methyltransferase [Shigella flexneri 2a str. 2457T]
 gi|56480302|ref|NP_709057.2| putative methyltransferase [Shigella flexneri 2a str. 301]
 gi|110807122|ref|YP_690642.1| putative methyltransferase [Shigella flexneri 5 str. 8401]
 gi|30042852|gb|AAP18575.1| putative methyltransferase [Shigella flexneri 2a str. 2457T]
 gi|56383853|gb|AAN44764.2| putative methyltransferase [Shigella flexneri 2a str. 301]
 gi|110616670|gb|ABF05337.1| putative methyltransferase [Shigella flexneri 5 str. 8401]
 gi|281602639|gb|ADA75623.1| putative methyltransferase [Shigella flexneri 2002017]
 gi|313648496|gb|EFS12938.1| uncharacterized adenine-specific methylase yhdJ [Shigella flexneri
           2a str. 2457T]
 gi|332752424|gb|EGJ82814.1| hypothetical protein SF434370_3499 [Shigella flexneri 4343-70]
 gi|332754622|gb|EGJ84988.1| hypothetical protein SF274771_3895 [Shigella flexneri 2747-71]
 gi|332765261|gb|EGJ95488.1| methyltransferase DNA adenine methyltransferase [Shigella flexneri
           2930-71]
 gi|332999897|gb|EGK19480.1| hypothetical protein SFK218_4295 [Shigella flexneri K-218]
 gi|333014545|gb|EGK33892.1| hypothetical protein SFK304_4117 [Shigella flexneri K-304]
          Length = 294

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 85/278 (30%), Positives = 134/278 (48%), Gaps = 33/278 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++ + L+KLP +SVDL+FADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDAFAELKKLPTESVDLLFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWLI 186
            + + + +E ++       AK YTFN DA+    +                         
Sbjct: 120 KKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +          D  + HPTQKP+ALL RI+++S+ PGDI+LDPF GS T+GAVA    R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPKALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            FIGIE+  +YI +  +R+         EL  +  ++T
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKT 275


>gi|317130947|ref|YP_004097229.1| Site-specific DNA-methyltransferase (adenine-specific) [Bacillus
           cellulosilyticus DSM 2522]
 gi|315475895|gb|ADU32498.1| Site-specific DNA-methyltransferase (adenine-specific) [Bacillus
           cellulosilyticus DSM 2522]
          Length = 254

 Score =  189 bits (480), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 76/249 (30%), Positives = 122/249 (48%), Gaps = 10/249 (4%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I + N    ++ +P +S+ L+ ADPPYN+   G            + + WD     E 
Sbjct: 11  NRIYQRNCTEGMKMIPGESISLVIADPPYNIGKKGSFIEAKDKHHHTIREDWDNIPLNE- 69

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           ++ F   W+  C RVLKP G+L   GS+HNI  I  +++   + +    +W KSNP P++
Sbjct: 70  FEKFNNDWINECFRVLKPGGSLLAWGSHHNIHIIAQLMEQTGYDMKPFYIWEKSNPAPSW 129

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            GR    + E L+W +     K +T+N D  K+ N    +++ +   +    E+ + +  
Sbjct: 130 SGRLPTTSTEYLLWGTKG---KNWTYNLDYAKSINNGKNIKNVFKTSLTPPKEKKKGR-- 184

Query: 201 EKLHPTQKPEA-LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
               P QK    L   ++   +  GDIIL PF GSGT   VAK   R FI  E K +YI 
Sbjct: 185 ---FPCQKRIEGLTDHLVKLHSLKGDIILVPFCGSGTECVVAKMYGRDFISFETKPEYIV 241

Query: 260 IATKRIASV 268
           +A  R+  +
Sbjct: 242 LANNRLDDI 250


>gi|206889902|ref|YP_002248225.1| modification methylase BamHI [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206741840|gb|ACI20897.1| modification methylase BamHI [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 338

 Score =  189 bits (480), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 74/271 (27%), Positives = 125/271 (46%), Gaps = 30/271 (11%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
           +N+N      +KII G+ + ++ K+P  SVD+ FADPP+NL+     Y  +H        
Sbjct: 2   QNKNFSKSLLNKIIFGDCLEIMRKIPDNSVDVTFADPPFNLKKKYNSYYDEH-------- 53

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
                   E Y ++ + WL    R+ KP G+++V      +   G+ L  +     + I 
Sbjct: 54  ------DVEIYLSWCKEWLYEMVRITKPTGSIFVHNIPKWLIYFGSYLNEI-AIFRHWIA 106

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED------------V 178
           W     M + RG+     H  +++   S K K Y       +                 +
Sbjct: 107 WD---AMGSPRGKTLLPNHYGILYYVKSDKFKFYDIRMLHKRCRKCKYILQDYGGKKAQM 163

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
                 +  + +   R+R++     HP Q P  L+ R+L+ ++  GD+ILDPF G+GT+ 
Sbjct: 164 HQFGPLVSDVWTDIHRIRHRKRRDKHPCQLPVHLIERLLLMTSDEGDVILDPFVGTGTTA 223

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
             AK+L R FIGI++ + YI+IA K++   Q
Sbjct: 224 IAAKRLGRRFIGIDIDEKYIEIAHKKLKETQ 254


>gi|283778311|ref|YP_003369066.1| DNA methylase N-4/N-6 domain-containing protein [Pirellula staleyi
           DSM 6068]
 gi|283436764|gb|ADB15206.1| DNA methylase N-4/N-6 domain protein [Pirellula staleyi DSM 6068]
          Length = 295

 Score =  189 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 78/308 (25%), Positives = 130/308 (42%), Gaps = 55/308 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +++I+G+ ++ L  LPA  VDL FADPP+N+  +               D +D   + + 
Sbjct: 7   NQLIQGDCVAGLASLPAGCVDLAFADPPFNIGYDY--------------DEYDDRRATDD 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPN 139
           Y  +   WL    RVLKP+GT W+         +   +Q        + +VW  +  +  
Sbjct: 53  YLTWCDQWLAEVSRVLKPDGTFWLAIGDEYAAELKVAMQRQHGLHCRSWVVWYYTFGVNC 112

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD---------------- 183
               +F  +H  L      P  K +TFN D ++  +    + +D                
Sbjct: 113 --KAKFSRSHAHLFHMVKDP--KKFTFNVDEIRVPSARQLVYADNRANPKGRLPDDTWIL 168

Query: 184 ---------------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
                          W  P  +G+     K+    H  Q PE LL RI+ +++ PG+++L
Sbjct: 169 RPQDLPDGFQPDDDTWYFPRVAGTF----KERAGWHGCQMPEQLLGRIIKATSNPGELVL 224

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
           DPF GSGT+  VAKKL R ++G E+ ++Y    T R+   +   ++       K + P  
Sbjct: 225 DPFSGSGTTLVVAKKLGRKYLGFELSKEYAARVTDRLKETKSGDDLNGAAEPLK-SAPST 283

Query: 289 AFNLLVER 296
           A    V+ 
Sbjct: 284 AKGKRVKS 291


>gi|313202777|ref|YP_004041434.1| DNA methylase N-4/N-6 domain protein [Paludibacter propionicigenes
           WB4]
 gi|312442093|gb|ADQ78449.1| DNA methylase N-4/N-6 domain protein [Paludibacter propionicigenes
           WB4]
          Length = 235

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 74/248 (29%), Positives = 116/248 (46%), Gaps = 17/248 (6%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I   + +  L++LP + VDLIF DPPY       +    +         +D F S + 
Sbjct: 4   NIIYNQSCLDGLKQLPDECVDLIFTDPPYYQHRAQNVQGLKNHKDVVTEFDFDGFKSEDE 63

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP-N 139
           Y  F    L+ C RV KP  + ++      +  I  M++   F     I W K+NP P  
Sbjct: 64  YLQFLEDVLMECFRVCKPGASGYLWCGDDFVSFINRMVERTGFQFRKVIHWHKTNPFPAM 123

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           +  + + N+ E L+  S        T+N+  +   +  +Q       PIC G ER +   
Sbjct: 124 YTRKMYANSMELLVHFSKGSPK---TWNHKPVNDMHNFIQA------PICMGKERTK--- 171

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
               H TQKP  +    +  S+  GD++LDPF GSG++   AKKL+R+FIG E+  +Y +
Sbjct: 172 ----HKTQKPLKVCMPFIEISSNEGDLVLDPFMGSGSTAVAAKKLKRNFIGYELSTEYCN 227

Query: 260 IATKRIAS 267
           IA  R+  
Sbjct: 228 IANSRLEK 235


>gi|17546701|ref|NP_520103.1| DNA-methyltransferase (DNA-modification methylase) protein
           [Ralstonia solanacearum GMI1000]
 gi|17429000|emb|CAD15684.1| probable dna-methyltransferase (dna-modification methylase) protein
           [Ralstonia solanacearum GMI1000]
          Length = 270

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 77/264 (29%), Positives = 124/264 (46%), Gaps = 27/264 (10%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I   + I+ + +L   SVDL+ ADPPY L   G+ Y  D   +             EA
Sbjct: 7   DGIFNEDCIAGVGRLADGSVDLVIADPPYGL---GKDYGNDSDKLSG-----------EA 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y A++  W+ A    L  NG+L++  ++     +  ML+     ++N+I+W +  P    
Sbjct: 53  YLAWSERWIEAVLPKLARNGSLYLFCTWQYAPELFVMLKR-RLSMINEIIWDRRVPSMGG 111

Query: 141 RGRRFQNAHETLIW------ASPSPKAKGYTFNYDALKAANEDVQMRSDWL------IPI 188
             R+F + H+ + +            A    ++ +  KA +        WL        +
Sbjct: 112 STRKFSSVHDNIGFFAASRDYYFDVDAVRIPYDAETKKARSRKRFEGKKWLEVGYNPKDV 171

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
            S S   R       HPTQKP  L+ R++++S  PG ++LDPF GSGT+ A   +L R F
Sbjct: 172 WSVSRLHRQDPERAEHPTQKPLELVERMVLASCPPGGLVLDPFLGSGTTAAACARLGRRF 231

Query: 249 IGIEMKQDYIDIATKRIASVQPLG 272
            G E+  +Y  +A +R+A+V PLG
Sbjct: 232 AGFEINAEYCRVARERVAAVTPLG 255


>gi|60682880|ref|YP_213024.1| putative methyltransferase [Bacteroides fragilis NCTC 9343]
 gi|60494314|emb|CAH09109.1| putative DNA methylase [Bacteroides fragilis NCTC 9343]
          Length = 286

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 79/261 (30%), Positives = 120/261 (45%), Gaps = 33/261 (12%)

Query: 22  KIIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           KII G++I  L+ ++   SVDLIFADPPYN+  N                  DK+ + + 
Sbjct: 10  KIIHGDAIEALKNEIEDNSVDLIFADPPYNIGKN-------------FAGCIDKWETDDK 56

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y ++   WL  C R LKP+G  +V+ S   +      L+     +   I     +     
Sbjct: 57  YLSWCYQWLDLCIRKLKPSGAFYVMTSTQFMPFFDLYLREKLTILSRLI--WYYDSSGVQ 114

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDAL------KAANEDVQMRSDWLIPI------ 188
               F + +E +++         YTFN +A+       A    +  R +   P       
Sbjct: 115 AKNYFGSMYEPILFCVKDK--NNYTFNSEAILVEAKTGAKRGLIDYRKNPPQPYSTEKVP 172

Query: 189 ---CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
                 +      D  + HPTQKP ALL RI+ +S+  GD+ILDPF G+ T+  VAK L 
Sbjct: 173 GNVWEFARVRYRMDEYENHPTQKPVALLERIIKASSNEGDLILDPFSGTFTTAFVAKTLN 232

Query: 246 RSFIGIEMKQDYIDIATKRIA 266
           R  IGIE+++DY+ I  +R+ 
Sbjct: 233 RRAIGIELQEDYVKIGLRRLE 253


>gi|291551270|emb|CBL27532.1| DNA modification methylase [Ruminococcus torques L2-14]
          Length = 574

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 85/387 (21%), Positives = 165/387 (42%), Gaps = 63/387 (16%)

Query: 19  WKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD----- 70
           W +KI  G+++ V+  L  +    +DLI+ DPP++ + + +      +   A++D     
Sbjct: 50  WINKIFWGDNLQVMSHLLKEYRGKIDLIYIDPPFDSKADYKKKIKMKNTGTALSDTSTFE 109

Query: 71  --SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWIL 126
              +    + + Y  F     +  R +L   G+L+V   +H +  +  +L  +       
Sbjct: 110 EKQYGDIWTNDEYLQFMYERFILIRELLSERGSLYVHCDWHKVHHLRMVLDEVFGPSNFR 169

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD----------------- 169
           N+++W            ++ + H+ +++ S    +  +TFNY                  
Sbjct: 170 NEVIWWYLWGG--RGKTQWNSKHDNILFYSK---SDNWTFNYMDVLDEHTLMTEGSKNRL 224

Query: 170 -----ALKAANEDVQMRSDWLIPICSGSERLRNK--DGEKLHPTQKPEALLSRILVSSTK 222
                 +   +E+ ++  D ++P  +      N     ++ +PTQKPE LLS+I+++S+ 
Sbjct: 225 NYAGAMVTTKSENSEIPQDKVLPSDTWYIATINAMAKEKENYPTQKPEELLSKIILASSN 284

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV-----------QPL 271
           PGDI+ D F GSGT+ AVA KL R FIG ++    I   TKR+ +V           +  
Sbjct: 285 PGDIVFDCFMGSGTTQAVAMKLGRRFIGADINLGSIQTTTKRLINVANELNESLQDDEKY 344

Query: 272 GNIELTVLTGKR--TEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELG 329
              E+  +        P  A +L+++   IQP       Q ++      DG ++   ++ 
Sbjct: 345 IGFEVYNVNNYDFFRNPVEARDLIIQALEIQPF-----PQSDVWDGEL-DGRMV---KIM 395

Query: 330 SIHRVGAKVSGSETCNGWNFWYFEKLG 356
            ++R+  K    E      +  +EK  
Sbjct: 396 PVNRIATKADLEELKANLPYKTYEKRK 422


>gi|299066411|emb|CBJ37596.1| Site-specific DNA-methyltransferase (adenine-specific) [Ralstonia
           solanacearum CMR15]
          Length = 270

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 77/264 (29%), Positives = 123/264 (46%), Gaps = 27/264 (10%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I   + I+ +  L   SVDL+ ADPPY L   G+ Y  D   +             EA
Sbjct: 7   DGIFNEDCIAGVGHLADGSVDLVIADPPYGL---GKDYGNDSDKLSG-----------EA 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y A++  W+ A    L  NG+L++  ++     +  ML+     ++N+I+W +  P    
Sbjct: 53  YLAWSERWIEAVLPKLARNGSLYLFCTWQYAPELFVMLKR-RLSMINEIIWDRRVPSMGG 111

Query: 141 RGRRFQNAHETLIW------ASPSPKAKGYTFNYDALKAANEDVQMRSDWL------IPI 188
             R+F + H+ + +            A    ++ +  KA +        WL        +
Sbjct: 112 STRKFSSVHDNIGFFAASRDYYFDVDAVRIPYDAETKKARSRKRFEGKKWLEVGYNPKDV 171

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
            S S   R       HPTQKP  L+ R++++S  PG ++LDPF GSGT+ A   +L R F
Sbjct: 172 WSVSRLHRQDPERAEHPTQKPLELVERMVLASCPPGGLVLDPFLGSGTTAAACARLGRRF 231

Query: 249 IGIEMKQDYIDIATKRIASVQPLG 272
            G E+  +Y  +A +R+A+V PLG
Sbjct: 232 AGFEINAEYCRVARERVAAVTPLG 255


>gi|228470286|ref|ZP_04055190.1| DNA methylase [Porphyromonas uenonis 60-3]
 gi|228308029|gb|EEK16904.1| DNA methylase [Porphyromonas uenonis 60-3]
          Length = 285

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 79/262 (30%), Positives = 121/262 (46%), Gaps = 33/262 (12%)

Query: 21  DKIIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +KII G+++  L + +   SVDL+FADPPYN+  N               D WD   S E
Sbjct: 7   NKIIHGDALQALSECISDNSVDLVFADPPYNIGKN----------FAGCLDKWD---SDE 53

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           +Y  +  +WL  C + LKP G L+V+ S   +      L+     IL+ IVW   +    
Sbjct: 54  SYLRWCYSWLDLCIQKLKPTGALYVMTSTQFMPYFDLYLRE-RLDILSRIVWSYDSSGVQ 112

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYD------ALKAANEDVQMRSDWLIPI----- 188
              R F + +E +++       + YTFN           A    +  R +   P      
Sbjct: 113 -AKRYFGSLYEPILFCVKDK--RQYTFNASDILVEAKTGAKRGLIDYRKNPPQPYSTTKV 169

Query: 189 ----CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
                  +         + HPTQKP  LL RI+ +S+  GD++LDPF G+ T+  VA  L
Sbjct: 170 PGNVWEFTRVRYRMPEYENHPTQKPIELLERIIKASSNEGDVVLDPFSGTFTTSYVASLL 229

Query: 245 RRSFIGIEMKQDYIDIATKRIA 266
            R  IGIE++++Y+ I  +R+ 
Sbjct: 230 HRKSIGIELQEEYVKIGLRRLG 251


>gi|212639015|ref|YP_002315535.1| adenine specific DNA methylase Mod [Anoxybacillus flavithermus WK1]
 gi|212560495|gb|ACJ33550.1| Adenine specific DNA methylase Mod [Anoxybacillus flavithermus WK1]
          Length = 589

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 93/401 (23%), Positives = 157/401 (39%), Gaps = 72/401 (17%)

Query: 19  WKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNL--QLNGQLYRPDHSLVDAVT---- 69
           W +KI  G+++ V+  L  +    + LI+ DPP++       ++    +S V   +    
Sbjct: 53  WMNKIFWGDNLQVMSHLLKEFRGKIKLIYIDPPFDSKADYKKRIQVRGNSTVSHNSLFEE 112

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW----- 124
             +    S + Y  F    L+  R +L  +G+++V   +H    I  +L  +        
Sbjct: 113 KQYTDIWSNDEYLQFLYERLILMRELLAEDGSIFVHTDWHKSHHIRCLLDEVFGDSGDEM 172

Query: 125 ----ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
                  +I+W  S        ++F+  HE + W + S +      +     +     Q 
Sbjct: 173 KKAGFKGEIIWYFSLIGG--NAKKFEKNHENIYWYTKSSEYIFNKDDVRQPYSKEFLEQC 230

Query: 181 RSDWLIPICSGSERLRNKDGEKL----------------------------------HPT 206
           + D    +     R   +DGEKL                                  +PT
Sbjct: 231 KRDEEGRLYYT--RGMGRDGEKLNRKHISYIHPLGKAPSDVWTDIKNYSPTGKERLGYPT 288

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           QKPEAL+ RI+ +++ PGDI+ D F GSGT+ AVA KL R FIG ++    +   TKR+ 
Sbjct: 289 QKPEALIERIIKAASNPGDIVFDCFMGSGTTQAVAMKLGRRFIGSDINLGAVQTTTKRLL 348

Query: 267 SV---QPLGNIELTVLTGKRTE----PRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           ++    P       V      E    P  A  LL+E   IQP    +   G +      D
Sbjct: 349 NILREDPDLKTGFEVYNVNNYEFFRNPVQAKELLIEALEIQPLPNNSLYDGEL------D 402

Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
           G ++   ++   +R+  K    E    +++  FEK  E   
Sbjct: 403 GRMV---KIMPTNRIATKADLGELIQNFDYRLFEKRREERP 440


>gi|240047330|ref|YP_002960718.1| Modification methylase HpaI [Mycoplasma conjunctivae HRC/581]
 gi|239984902|emb|CAT04895.1| Modification methylase HpaI [Mycoplasma conjunctivae]
          Length = 299

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 69/249 (27%), Positives = 115/249 (46%), Gaps = 19/249 (7%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII GN+I  L+K+ +KS++LI  DPPYNL  +    + +                FE Y
Sbjct: 6   KIICGNAIEELKKIESKSINLIVTDPPYNLNKDYGNNKDNLK--------------FEEY 51

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNF 140
             F+R WL   +R+LK +GT+++      I  I ++L+  LN    + I W  +  +   
Sbjct: 52  LEFSRQWLTEAKRILKDDGTIYIFMGTRYISYIYSILEKELNMHFNSWITWFYTQGIGKT 111

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP--ICSGSERLRNK 198
           +G  F   H+ ++  +       +  +   +               P  +   S      
Sbjct: 112 KG--FSPRHDDILMFTKHKSKFTFNLDDIRVPQKFYRSVNNMRGANPGNVWQFSHMHYCN 169

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
              K HPTQKPE L  R+++ S+   D +LDPF GSGT   V ++  R  IGI++ ++Y+
Sbjct: 170 KNRKKHPTQKPEGLYERMILVSSNENDTVLDPFVGSGTMLRVCQQTNRRGIGIDINEEYV 229

Query: 259 DIATKRIAS 267
            +  +R+  
Sbjct: 230 RMCKERLEE 238


>gi|312869218|ref|ZP_07729390.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus oris PB013-T2-3]
 gi|311095239|gb|EFQ53511.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus oris PB013-T2-3]
          Length = 256

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 85/247 (34%), Positives = 133/247 (53%), Gaps = 9/247 (3%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           + + ++ + ++++P  +VD+I ADPPY L  +G         V      WDK  S +  +
Sbjct: 11  LYQDDAFNFMKRIPNNAVDVIVADPPYFLSNDG-FSNSGGKFVSVNKGKWDKLPS-KDIE 68

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F    L   +R+L  NGT W+ GS HNI+ IG +L   +F ILN+I W+KSNP PN   
Sbjct: 69  KFYAEMLSQFQRILNKNGTAWIFGSMHNIYVIGYLLNRYDFKILNNITWQKSNPAPNLSR 128

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R F ++ ET++W       +   FNYD ++  N + QM+  W     + SE+        
Sbjct: 129 RMFTHSTETILWIKKKDGKQ--FFNYDLMRKLNGNKQMKDVWTTATINKSEKRFGN---- 182

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKP +++ RI+ +ST  G I+LDPF G+GT+    K      +G++    Y++IA 
Sbjct: 183 -HPTQKPLSIIMRIIKASTTDGMIVLDPFIGAGTTAVAGKLCGVKVVGVDNSAGYLNIAV 241

Query: 263 KRIASVQ 269
           +R+   Q
Sbjct: 242 QRLKDYQ 248


>gi|87306976|ref|ZP_01089122.1| adenine-specific methyltransferase [Blastopirellula marina DSM
           3645]
 gi|87290349|gb|EAQ82237.1| adenine-specific methyltransferase [Blastopirellula marina DSM
           3645]
          Length = 309

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 80/297 (26%), Positives = 121/297 (40%), Gaps = 54/297 (18%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           DK+   + I  + KLP  SVDL+FADPP+N+                  D +D   S + 
Sbjct: 7   DKLKNVDCIQGMSKLPDGSVDLVFADPPFNIGFKY--------------DVYDDRRSADE 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLW-VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           Y  ++RAW+    RVLK +G+ W  IG            ++L     N +VW  +  M  
Sbjct: 53  YLEWSRAWMEQVARVLKSDGSFWLAIGDDFAAELKVLATRDLGMHCRNWVVWYYTFGMHC 112

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD---------------- 183
               +F  +H  L +    P+   +TFN  +++  +  + +  D                
Sbjct: 113 --KAKFTRSHTHLFYFVKDPE--NFTFNDMSVRVPSARMLVYGDRRANPKGRLPDDTWVL 168

Query: 184 ---------------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
                          W  P  +G+     K+    H  Q PE LL RI+  S+  G+ +L
Sbjct: 169 RPQDIPESFQAEEDTWHFPRVAGTF----KERAGFHGCQMPEQLLGRIIKVSSSEGETVL 224

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           DPF GSG++  VAKKL R  +G EM  +Y   A  RI  VQ    +  +        
Sbjct: 225 DPFAGSGSTLVVAKKLGRRHLGFEMSPEYAAAAQARIDEVQSGDPLTGSPEPSMSAP 281


>gi|319410295|emb|CBY90637.1| putative type II restriction methyltransferase [Neisseria
           meningitidis WUE 2594]
          Length = 285

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 82/275 (29%), Positives = 131/275 (47%), Gaps = 37/275 (13%)

Query: 5   NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL 64
               I  N+NS       +I G+ + VL+ LP+ SVDLIFADPPY +  +          
Sbjct: 2   KKFEIQFNKNST------VILGDCLEVLKTLPSSSVDLIFADPPYGIGKD---------- 45

Query: 65  VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
                ++ D F+    Y  +  +W+  C RVLK NGT++++ S   +  +   +    ++
Sbjct: 46  ---FGNNKDFFADAYQYLDWCASWIDECMRVLKDNGTMYLMSSVQYMPILDRYVDE-KYF 101

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS-- 182
           I+N IVW   +     +  +F + +E ++  +    +K YTFN + +    +    R   
Sbjct: 102 IINRIVWSYDSSGVQAKN-KFGSTYEPILMFTHHKNSK-YTFNSEDILIEAKTGAERKLI 159

Query: 183 -------------DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
                             +   +      D  + HPTQKPE LL RI+++S+  GD ILD
Sbjct: 160 DYRKTPPQPYNAKKIPSNVWEFNRVRYKMDEYENHPTQKPEKLLERIILASSNKGDTILD 219

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PF GS T+ +VA +L+R  IGIE+  DY  I  +R
Sbjct: 220 PFSGSFTTSSVAVRLKRKAIGIEINPDYFKIGIRR 254


>gi|225870198|ref|YP_002746145.1| DNA methylase [Streptococcus equi subsp. equi 4047]
 gi|225699602|emb|CAW93244.1| putative DNA methylase [Streptococcus equi subsp. equi 4047]
          Length = 236

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 77/262 (29%), Positives = 118/262 (45%), Gaps = 28/262 (10%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
           E++    E K     GN + +L +L   S+D++  DPPYN+ +         + +D    
Sbjct: 2   EDKKHYMEIK----CGNCLELLTELTDGSIDMVITDPPYNISVKNNFATMGRTGIDF--G 55

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
            WDK +          +W+    R L  NG + +   + N+  I    +     + +   
Sbjct: 56  DWDKGAD-------LLSWIDIASRKLTKNGGMVIFNDWKNLGDIARHCEKTGLAVKDIFR 108

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W K NPMP  R RR+    E  IW         + FN  +      +   R ++  PI S
Sbjct: 109 WVKDNPMPRNRDRRYITDSEYGIWVVRKNS--KWVFNRKS------EKYDRPEYRYPIVS 160

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           G+E+ +       HPTQKP AL+  I+   T    ++LDPF GSG++G       R FIG
Sbjct: 161 GAEKTQ-------HPTQKPVALMRDIITRHTTKRAVVLDPFMGSGSTGVACLLTERDFIG 213

Query: 251 IEMKQDYIDIATKRIASVQPLG 272
            E+ +DY +IA KRIA +   G
Sbjct: 214 YELNKDYFNIANKRIAELTGNG 235


>gi|118576552|ref|YP_876295.1| DNA modification methylase [Cenarchaeum symbiosum A]
 gi|118195073|gb|ABK77991.1| DNA modification methylase [Cenarchaeum symbiosum A]
          Length = 264

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 66/248 (26%), Positives = 120/248 (48%), Gaps = 11/248 (4%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +D+I  G+ I  +  +   SVDLI  DPP+ +    +    +    + + D +++ +  E
Sbjct: 17  RDRIFHGDCIEGMAAMKESSVDLIVTDPPFAIGFGARRANYNRKEGNVM-DGYNEITPAE 75

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y  FT  W+    RVLK  G+++V   + N+  I   +    F  +N I+WR    +  
Sbjct: 76  -YPGFTGRWMAGAHRVLKETGSMFVFSGWTNLQDILRAIDETGFKTINHIIWRYQFGV-- 132

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           +  RRF ++H   ++   + K + +          +    M   W+I     S       
Sbjct: 133 YTKRRFVSSHYHCLYVCKNDKKRRFYTESRHSDTKSRYRDMEDVWVINREYWS------- 185

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+K  PT+ P  L+ +IL  S++ GD+++DPF GSG    V+K++ R + G E+ ++Y D
Sbjct: 186 GKKKTPTKLPGELIRKILQYSSREGDLVMDPFLGSGQVAVVSKEMGRRYAGFEIVREYYD 245

Query: 260 IATKRIAS 267
            A +R+ +
Sbjct: 246 FALERLGA 253


>gi|300691105|ref|YP_003752100.1| site-specific DNA-methyltransferase (adenine-specific) [Ralstonia
           solanacearum PSI07]
 gi|299078165|emb|CBJ50808.1| Site-specific DNA-methyltransferase (adenine-specific) [Ralstonia
           solanacearum PSI07]
          Length = 270

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 75/264 (28%), Positives = 121/264 (45%), Gaps = 27/264 (10%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I   + I+ +  L   SVDL+ ADPPY L   G+ Y  D   +             EA
Sbjct: 7   DGIFNEDCIAGVGHLADGSVDLVIADPPYGL---GKDYGNDSDKLSG-----------EA 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y A++  W+ A    L  NG+L++  ++     +  ML+     ++N+I+W +  P    
Sbjct: 53  YMAWSERWIEAVLPKLARNGSLYLFCTWQYAPELFVMLKR-RLQMINEIIWDRRVPSMGG 111

Query: 141 RGRRFQNAHETLIW------ASPSPKAKGYTFNYDALKAANEDVQMRSDWL------IPI 188
             R+F + H+ + +            A    ++ +  KA +        WL        +
Sbjct: 112 STRKFSSVHDNIGFFAASRDYYFDVDAVRIPYDAETKKARSRKRFEGKKWLEVGYNPKDV 171

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
            S S   R       HPTQKP  L+ R++++S  PG ++LDPF GSGT+     +L R F
Sbjct: 172 WSVSRLHRQDPERAEHPTQKPLELVERMVLASCPPGGLVLDPFLGSGTTAVACARLGRRF 231

Query: 249 IGIEMKQDYIDIATKRIASVQPLG 272
            G E+  +Y  +A +R+A+V  LG
Sbjct: 232 AGFEINAEYCRVARERVAAVTSLG 255


>gi|320160760|ref|YP_004173984.1| methyltransferase [Anaerolinea thermophila UNI-1]
 gi|319994613|dbj|BAJ63384.1| methyltransferase [Anaerolinea thermophila UNI-1]
          Length = 295

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 121/298 (40%), Gaps = 28/298 (9%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR--------------PDH 62
             W  ++  G+++S+L +LP++SV LI+ DPP+N        R                 
Sbjct: 1   MTWIRRVYFGDNLSILRRLPSESVHLIYIDPPFNTGKEQSRTRLRVVQSDTGNRRGFGGR 60

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL- 121
           +      D       F+ Y+AF    L    R+L PNG+L+    Y  +      L  + 
Sbjct: 61  TYESIPIDEKAYPDDFDDYEAFLVPRLEEAYRILTPNGSLYFHIDYREVHYCKIWLDRIF 120

Query: 122 -NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN--------YDALK 172
                LN+I+W            R+   H+ +++    P    YTFN        Y A  
Sbjct: 121 GRDCFLNEIIWAYDYGGKP--KNRWPAKHDNILFYVKDP--NHYTFNVDAIDREPYMAPG 176

Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
               +   R      +   +    N   +  +PTQKP  ++ RI+ +S+  GD+++D F 
Sbjct: 177 LVGPEKAARGKLPTDVWWHTIVGTNSKEKTGYPTQKPVGVIDRIIKASSNAGDVVMDFFA 236

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAF 290
           GSGT G    KL R FI I+   + I +  +R A V+ +  I     +   T+    F
Sbjct: 237 GSGTVGESCLKLNRQFILIDNHPEAIHVMRQRFAGVEGIEWINAFNTSSGDTQSLDPF 294


>gi|256421531|ref|YP_003122184.1| DNA methylase N-4/N-6 domain protein [Chitinophaga pinensis DSM
           2588]
 gi|256036439|gb|ACU59983.1| DNA methylase N-4/N-6 domain protein [Chitinophaga pinensis DSM
           2588]
          Length = 601

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 83/419 (19%), Positives = 150/419 (35%), Gaps = 67/419 (15%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP------DHSL 64
             +  W +KI  G+++ V+  L       +D I+ DPPY+ + + +           ++ 
Sbjct: 46  KEVKRWMNKIFWGDNLQVMSHLLKDYKGQIDFIYIDPPYDSKADYRKKIKLRGKEVINNA 105

Query: 65  VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NF 123
           +      +    S + Y  F    L+  R +L   G++ +   +H +  +  ++  +   
Sbjct: 106 ISFEEKQYTDIWSNDEYLQFMYERLMLIRELLSDKGSIILQCDWHKVHHLRCIMDEIFGP 165

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP-------------------------S 158
               + +            + F   H+ L++                             
Sbjct: 166 DNCINEIIWHYKTFQGQTKKYFARKHDNLLFYKKGSDFIYNKLYDTSLENTIDAVRWADY 225

Query: 159 PKAKGYTFNYDALKAANEDVQMRSDWL--------------------IPICSGSERLRNK 198
               G  +        +  ++  + W                     +      + L  K
Sbjct: 226 IDENGRIYGKKMPLQDSRFIRYLNKWKRAYKREPEADDVIYEAKGQPLDSVWDMKGLDPK 285

Query: 199 DGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
             EKL +PTQKPE L+ RI++++T  G I+ D F GSGT  AVA K  R FIG ++    
Sbjct: 286 SEEKLGYPTQKPEDLMERIILATTNRGSIVFDCFMGSGTVQAVAMKTGRKFIGADINLGA 345

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL-VERGLIQPGQILTNA------QG 310
           +   TKR+  V    N     +T          N   V R  ++  +IL  A        
Sbjct: 346 VQTTTKRLLHVAAELNKRKEKITRYTGFQVYNVNHFDVFRNPLEAKEILIKALEIKPFPN 405

Query: 311 NISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSIN-TLRILV 368
           N       DG ++S   +  I+R+      +E    +++  FEKL   H     LR+L+
Sbjct: 406 NNVYDGKKDGRMVS---IMPINRITTLADLNELIANFDYKAFEKLKSKHPRKPVLRLLL 461


>gi|148654309|ref|YP_001274514.1| adenine-specific DNA-methyltransferase [Roseiflexus sp. RS-1]
 gi|148566419|gb|ABQ88564.1| Site-specific DNA-methyltransferase (adenine-specific) [Roseiflexus
           sp. RS-1]
          Length = 303

 Score =  182 bits (463), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 70/288 (24%), Positives = 121/288 (42%), Gaps = 24/288 (8%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL--------------NGQLYRPDHSLVDA 67
           KI   ++I VL  LP++SVDLI+ DPP+N                   ++    H     
Sbjct: 14  KIYLADNIDVLRTLPSESVDLIYIDPPFNTGKVQERTQLKTVRSESGDRVGFQGHRYESI 73

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWI 125
           V         F+ Y AF    L+   R+L P+G L+V   Y  +     +L  +      
Sbjct: 74  VVGKKRFADLFDDYLAFLEPRLVEAHRILAPHGCLYVHLDYREVHYCKVLLDAIFDRACF 133

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN------YDALKAANEDVQ 179
           LN+I+W            R+   H+T++  +  P    +  +      Y A      +  
Sbjct: 134 LNEIIWAYDYGGRP--RDRWPPKHDTILLYAKVPGQHVFNLDAIERIPYMAPGLVGPEKA 191

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
            R          +    N   +  +PTQKP  +L RI+ +S+ PG ++LD F GSGT+G 
Sbjct: 192 ARGKLPTDTWWHTIVPTNGSEKTGYPTQKPLGILRRIIQASSHPGAVVLDFFAGSGTTGI 251

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
            A +L R FI ++  Q+ + +  +R   ++ +  +    +  ++ E +
Sbjct: 252 AALELGRRFILVDNSQEALQVMARRFDGIRGITWVGFDPMPYQKGEKQ 299


>gi|209524406|ref|ZP_03272955.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
 gi|79835531|gb|ABB52099.1| Mod [Arthrospira platensis]
 gi|209495197|gb|EDZ95503.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
          Length = 295

 Score =  182 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 87/302 (28%), Positives = 139/302 (46%), Gaps = 36/302 (11%)

Query: 17  FEWKDKIIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
            + ++ I  G++I +L  ++ A SV+LIFADPPYN+      +              D++
Sbjct: 6   QDDRNTIFHGDAIQILSSQIAANSVNLIFADPPYNIGKKFSKFH-------------DQW 52

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
           +S E Y  ++  WL  C RVLKPNGTL+V+ S  ++      L+     IL+ IVW   +
Sbjct: 53  NSEEDYINWSYQWLDECVRVLKPNGTLYVMTSTQSMPYFDIYLRQ-KMSILSRIVWHYDS 111

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR--SDWLIPI----- 188
                  + F + +E ++        K Y FN   +K   +    R   D+  P+     
Sbjct: 112 SGVQ-AKKYFGSMYEPILHCVKDQ--KNYIFNSADIKVEAKTGAQRKLIDYRKPVPTQYN 168

Query: 189 --------CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
                                + HP QKPE+LL RI+++ST   D++LDPF G+ T+ AV
Sbjct: 169 SEKVPGNVWYFPRVRYRMAEYENHPAQKPESLLERIILASTNTHDLVLDPFAGTFTTAAV 228

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           AK+L R  + IE +++Y+ I  +R+   Q     +L      +T+    F        IQ
Sbjct: 229 AKRLGRISMSIESQEEYLKIGLRRVLGWQEYQGEKLLPPAKNQTKQNTNFPT---NQFIQ 285

Query: 301 PG 302
           P 
Sbjct: 286 PS 287


>gi|224538890|ref|ZP_03679429.1| hypothetical protein BACCELL_03786 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519497|gb|EEF88602.1| hypothetical protein BACCELL_03786 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 262

 Score =  182 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 73/267 (27%), Positives = 120/267 (44%), Gaps = 25/267 (9%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            E+ +KI   + ++ + +LP KSV L+   PPYN+ +          LV++    +    
Sbjct: 1   MEYTNKIFNHSCLN-MSELPDKSVSLMVTSPPYNINIEYGNKWDKGKLVESKGKKYIDNL 59

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVI--GSYHN-----IFRIGTMLQNLNFWILNDI 129
             E Y       +   +RVLK +G +W      Y N      F +    ++   ++ N I
Sbjct: 60  EEEEYRTMLSVVIEETKRVLKDDGEIWFNIKNRYKNEEIIPPFWVMEFFKD--MYLKNII 117

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF--------NYDALKAANEDVQMR 181
           +W           +RF + +E + + +       +          NY   +  ++     
Sbjct: 118 IWNFDWGGST--NKRFCSRYEYVFFFTKKKGDYTFNLEDVKIPALNYRPDRYKSQLKNPT 175

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
             W I + SG     N      HP Q PE L+ RI+   T PGD++LDPF GSGT+  VA
Sbjct: 176 DVWNISLVSG-----NSPERTEHPAQYPEELIERIIKVGTNPGDLVLDPFMGSGTTAVVA 230

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASV 268
           KKL R+++G E++ D+I IA  R+ +V
Sbjct: 231 KKLGRNYVGYEIEPDFIKIAENRLNNV 257


>gi|317008725|gb|ADU79305.1| adenine specific DNA methyltransferase (putative type II)
           [Helicobacter pylori India7]
          Length = 232

 Score =  182 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 76/247 (30%), Positives = 114/247 (46%), Gaps = 23/247 (9%)

Query: 22  KIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDKFSSF 78
           +I   ++  +++    +   VD I  DPPYN+ +         +    +    WDK    
Sbjct: 3   QIYHADAFEIIKDFYQQNLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDK---- 58

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
              +     W+     ++ PNG + +  SY  I  I   L+   F + + I W K+NPMP
Sbjct: 59  ---NFKLLEWIKRYAPLINPNGCIIIFCSYRFISYIADFLEENGFVVKDFIQWVKTNPMP 115

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
               RR+    E  +WA        + FN    K  NE          P+  G ER++  
Sbjct: 116 RNLNRRYVQDTEFALWAVKKKA--KWVFN----KPENEKYLRPLILKSPVVGGLERVK-- 167

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQK  AL+ +I+   T P DI+LDPF GSGT+G   K L R+FIGIE++++Y 
Sbjct: 168 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKNLERNFIGIELEKEYF 222

Query: 259 DIATKRI 265
             A KR+
Sbjct: 223 QTAKKRL 229


>gi|94311402|ref|YP_584612.1| DNA methylase N-4/N-6 [Cupriavidus metallidurans CH34]
 gi|93355254|gb|ABF09343.1| DNA methylase N-4/N-6 [Cupriavidus metallidurans CH34]
          Length = 311

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 67/262 (25%), Positives = 122/262 (46%), Gaps = 27/262 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++ + + +  ++++P  S+DL+ ADPPY L   G+ Y  D  L+             +AY
Sbjct: 32  RLYQEDVLEGIKRIPDGSIDLVVADPPYGL---GKDYGNDSDLLSG-----------DAY 77

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             ++  W+ A    + P GTL++  ++     +  ML+     ++N+I+W +  P     
Sbjct: 78  LEWSERWMDAIVPKIAPRGTLYLFCTWQYSPELFVMLKR-RMTMINEIIWDRRVPSMGGT 136

Query: 142 GRRFQNAHETLIWASPSPKAK------GYTFNYDALKAANEDVQMRSDWL------IPIC 189
            R+F + H+ + + +               ++ +  KA +        WL        + 
Sbjct: 137 TRKFSSVHDNIGFFARQRDYFFDLDPVRIPYDAETKKARSRPRFEGKKWLEVGYNPKDLW 196

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           S     R       HPTQKP  ++ R+++SS  PG I+LDPF GSGT+     +  RSF+
Sbjct: 197 SVPRIHRQDPERADHPTQKPLEIVERMVLSSCPPGGIVLDPFTGSGTTAVACVRHGRSFV 256

Query: 250 GIEMKQDYIDIATKRIASVQPL 271
           G EM  +Y  +  +R+ + QP+
Sbjct: 257 GFEMNPEYAGLVRERVTAAQPV 278


>gi|261838927|gb|ACX98692.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter pylori
           52]
          Length = 232

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 78/247 (31%), Positives = 117/247 (47%), Gaps = 23/247 (9%)

Query: 22  KIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDKFSSF 78
           +I   ++  +++    +   VD I  DPPYN+ +        ++    +    WDK    
Sbjct: 3   QIYHADAFEIIKDFYQQNLKVDAIITDPPYNISVKNNFSTLKNAKRQGIDFGEWDK---- 58

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
              +     W+     ++ PNG + +  SY  I  I   L+   F + + I W K+NPMP
Sbjct: 59  ---NFKLLEWIKRYAPLVNPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMP 115

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
               RR+    E  +WA        + FN    K  NE          P+ SG ER++  
Sbjct: 116 RNINRRYVQDTEFALWAVKKKA--KWVFN----KPKNEKYLRPLILKSPVVSGLERVK-- 167

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQK  AL+ +I+   T P DI+LDPF GSGT+G   K+L R+FIGIE +++Y 
Sbjct: 168 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLERNFIGIESEKEYF 222

Query: 259 DIATKRI 265
            IA KR+
Sbjct: 223 QIAKKRL 229


>gi|317010332|gb|ADU84079.1| adenine specific DNA methyltransferase (putative type II)
           [Helicobacter pylori SouthAfrica7]
          Length = 232

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 75/250 (30%), Positives = 117/250 (46%), Gaps = 23/250 (9%)

Query: 22  KIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDKFSSF 78
           +I   ++  +++    +   VD I  DPPYN+ +         +    +    WDK    
Sbjct: 3   QIHHADAFEIIKDFHQQNLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDK---- 58

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
              +     W+     ++ PNG + +  SY  +  I   L+   F + + I W K+NPM 
Sbjct: 59  ---NFKLLEWIALYAPLVNPNGCMIIFCSYRFMSYIADFLEENGFVVKDFIQWVKTNPML 115

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
               RR+    E  +WA        + FN    K  NE          P+ SG+ER++  
Sbjct: 116 RNLNRRYVQDTEFALWAVKKKA--KWVFN----KPNNEAYLRPLILKSPVVSGTERVK-- 167

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQK  AL+ +I+   T P  ++LDPF GSGT+G   K L+R+FIGIE++++Y 
Sbjct: 168 -----HPTQKSLALMEKIISIHTNPNHLVLDPFMGSGTTGLACKNLKRNFIGIELEKEYF 222

Query: 259 DIATKRIASV 268
             A KR+ SV
Sbjct: 223 QTAKKRLGSV 232


>gi|51891472|ref|YP_074163.1| DNA modification methylase M.SthI [Symbiobacterium thermophilum IAM
           14863]
 gi|51855161|dbj|BAD39319.1| DNA modification methylase M.SthI [Symbiobacterium thermophilum IAM
           14863]
          Length = 289

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 72/283 (25%), Positives = 118/283 (41%), Gaps = 61/283 (21%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I++G++   L+++P  S+  +   PPY    +             +        S   Y 
Sbjct: 19  ILEGDARLALQRIPDNSIQCVVTSPPYWSLRDY-----------GIEGQIGLEDSVYQYI 67

Query: 83  AFTRAWLLACRRVLKPNGTLW-VIGSYHN------------------------------- 110
               +     RRVLKP+GTLW  IG  +                                
Sbjct: 68  NTLVSVFREVRRVLKPDGTLWLNIGDSYTSGGRTWRAPDKKNQARAMSIRPDTPEGLKPK 127

Query: 111 -----IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
                 +R+   LQ   +++ +DI+W K N MP     R   +HE +   S    ++ Y 
Sbjct: 128 DLIGVPWRLAFALQQDGWYLRSDIIWHKPNAMPESVKDRPTRSHEYIFLFSK---SERYY 184

Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
           ++Y A++  N     RS W I           +  ++ H    P  L+   +++ +KPGD
Sbjct: 185 YDYQAIREENG-RNRRSVWHI---------NTQPNKEAHFAVFPTTLVEPCILAGSKPGD 234

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            +LDPF GSGT+  V + L R ++GIE+  +YI IA KR+ S+
Sbjct: 235 YVLDPFLGSGTTAVVCQNLDRKYVGIELNPEYIQIAVKRLTSI 277


>gi|187929215|ref|YP_001899702.1| DNA methylase N-4/N-6 domain-containing protein [Ralstonia
           pickettii 12J]
 gi|187726105|gb|ACD27270.1| DNA methylase N-4/N-6 domain protein [Ralstonia pickettii 12J]
          Length = 273

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 74/257 (28%), Positives = 119/257 (46%), Gaps = 27/257 (10%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I   + I+ +E L   SVDL+ ADPPY L   G+ Y  D   +             +A
Sbjct: 7   DGIFNEDCITGVEHLADGSVDLVIADPPYGL---GKDYGNDSDKLSG-----------DA 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y A++  W+ A R  L  NG+L++  ++     +  ML+     ++N+I+W +  P    
Sbjct: 53  YLAWSERWIDAVRPKLARNGSLYLFCTWQYAPELFVMLKR-RLTMVNEIIWDRRVPSMGG 111

Query: 141 RGRRFQNAHETLIW------ASPSPKAKGYTFNYDALKAANEDVQMRSDWL------IPI 188
             R+F + H+ + +            A    ++ +  KA +        WL        +
Sbjct: 112 STRKFSSVHDNIGFFAASRDYYFDVDAVRIPYDAETKKARSRKRFEGKKWLEVGYNPKDV 171

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
            S S   R       HPTQKP  L+ R++++S  PG ++LDPF GSGT+ A   +L R F
Sbjct: 172 WSVSRLHRQDPERAEHPTQKPLELVERMILASCPPGGLVLDPFLGSGTTAAACARLGRRF 231

Query: 249 IGIEMKQDYIDIATKRI 265
            G E+  DY  +A +R+
Sbjct: 232 AGFEINADYCRVARERV 248


>gi|149174979|ref|ZP_01853603.1| adenine-specific methyltransferase [Planctomyces maris DSM 8797]
 gi|148846316|gb|EDL60655.1| adenine-specific methyltransferase [Planctomyces maris DSM 8797]
          Length = 306

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 79/323 (24%), Positives = 136/323 (42%), Gaps = 64/323 (19%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I   + I+ +++L A+S+DL FADPP+N+                  D ++     E 
Sbjct: 5   NQIHIQDCIAGMQELEAESIDLAFADPPFNIGYEY--------------DQYEDRLESEQ 50

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPN 139
           Y  +   WL    R+LKP+GT W+         +  M+Q  L     + ++W  +  +  
Sbjct: 51  YLDWCNLWLKEVVRLLKPDGTFWLAIGDEYAAELKVMMQRELGLTCRSWVIWYYTFGVNC 110

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD---------------- 183
               +F  +H  L +    PK   +  +  A++  +    +  D                
Sbjct: 111 --KNKFSRSHAHLFYMVKDPKQFTFNADDPAIRIPSARQLVYGDKRANPKGRLPDDTWIL 168

Query: 184 ---------------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
                          W  P  +G+     K+ +  H  Q PE LL RI+ + + P +++L
Sbjct: 169 RPQDIPESFQSEEDTWYFPRINGTF----KERQGWHGCQMPEQLLGRIIRACSHPEEVVL 224

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
           DPF GSGT+ AVAKKL R F+G E+ ++Y   A +R+A ++P   ++ T           
Sbjct: 225 DPFSGSGTTLAVAKKLERQFVGFELSEEYGARAQQRLAEIKPGQPLDGTE---------- 274

Query: 289 AFNLLVERGLIQPGQILTNAQGN 311
             N LV     + G+ L + Q  
Sbjct: 275 --NPLVSAPTTKNGRRLKDRQQK 295


>gi|254304047|ref|ZP_04971405.1| site-specific DNA-methyltransferase (adenine-specific)
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148324239|gb|EDK89489.1| site-specific DNA-methyltransferase (adenine-specific)
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 297

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 81/309 (26%), Positives = 141/309 (45%), Gaps = 31/309 (10%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
            K      EN + +    +  I GN + +L+++   SVDLIFADPPY +  +        
Sbjct: 1   MKEFFKNIENYSYVSNDNNIAILGNCLDILKEIKDNSVDLIFADPPYGIGKD-------- 52

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                  +  D F +   Y  + + W+  C RVLK +GT++ + S   +  +   + +  
Sbjct: 53  -----FGNKTDFFKNKYEYFEWAKKWIDECMRVLKKDGTMYFMTSTQFMSILDNYVDDKY 107

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK----AANEDV 178
           F I   +    S+ +      +F + +E ++  + + K K Y FNY+ +       ++  
Sbjct: 108 FIISRIVWCYDSSGV--QAKSKFGSLYEPILMITHNDKVK-YKFNYEDIMVEAITGSKRN 164

Query: 179 QMRSDWLIP-----------ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
            +     IP           + + +      +  + HPTQKPE LL RI+++S+  GD++
Sbjct: 165 LIDYRKKIPAPYSNLKVPGNVWTFNRVRFRMEEYENHPTQKPEELLMRIILASSNKGDVV 224

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
           LDPF GS T+  VA KL R  IGIE+  +Y  I  +R    +   N +L     K+T  +
Sbjct: 225 LDPFSGSFTTSNVALKLDRKAIGIEINPEYFKIGIRRTKLSEYFENEKLEKQKIKKTNNK 284

Query: 288 VAFNLLVER 296
              + +V+ 
Sbjct: 285 SKKDHVVKN 293


>gi|71911257|ref|YP_282807.1| adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS5005]
 gi|94989076|ref|YP_597177.1| adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS9429]
 gi|94992967|ref|YP_601066.1| adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS2096]
 gi|71854039|gb|AAZ52062.1| adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS5005]
 gi|94542584|gb|ABF32633.1| adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS9429]
 gi|94546475|gb|ABF36522.1| Adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS2096]
          Length = 283

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 71/253 (28%), Positives = 115/253 (45%), Gaps = 24/253 (9%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I  GN + +L +L    +D++  DPPYN+ +         + +D     WDK       
Sbjct: 2   EIKCGNCLELLAELTDGLIDMVITDPPYNISVKNNFATMGRTGIDF--GDWDKGFD---- 55

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                +W+    + L  NG + +   + N+  I    +     + +   W K NPMP  R
Sbjct: 56  ---LLSWIDIASQKLTKNGGMIIFNDWKNLGDIARHCEKNGLVVKDIFRWVKDNPMPRNR 112

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            RR+    E  +W         + FN  +      +   R ++  P+ +G+E+ +     
Sbjct: 113 DRRYITDSEYGVWVVRKKS--KWVFNRKS------EKYDRPEYRYPVVAGAEKTQ----- 159

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPTQKP AL+  I+   T  G ++LDPF GSG++G       R FIG E+ +DY +IA
Sbjct: 160 --HPTQKPVALMKDIITRHTTKGAVVLDPFMGSGSTGVACLLTGRDFIGYELNKDYFNIA 217

Query: 262 TKRIASVQPLGNI 274
            KRIA +   G +
Sbjct: 218 NKRIAELTGNGGV 230


>gi|163753955|ref|ZP_02161078.1| DNA methylase N-4/N-6 domain protein [Kordia algicida OT-1]
 gi|161326169|gb|EDP97495.1| DNA methylase N-4/N-6 domain protein [Kordia algicida OT-1]
          Length = 596

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 83/396 (20%), Positives = 163/396 (41%), Gaps = 62/396 (15%)

Query: 19  WKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLY------RPDHSLVDAVT 69
           W +KI  G+++ V+  L  +    VDLI+ DPP++ + + +        + +++      
Sbjct: 60  WMNKIFWGDNLQVMSHLLKEYRGKVDLIYIDPPFDSKADYKRKIELKGKKIENNRTSFEE 119

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILN 127
             +    + ++Y  F    ++  + +L   GT++V   Y  I  +  ++  +       N
Sbjct: 120 KQYTDIWTNDSYLQFIYERVILLKELLSDKGTIYVHADYRKIHYLQLIMDEIFGASNFRN 179

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF--------------------- 166
           +I+W  +       G  F   H+ ++  S +     +                       
Sbjct: 180 EIIWCYTGASN--VGSDFPKKHDNILRYSKTGNYVFFKDSIRIPYAEGSLDRANRNVIGT 237

Query: 167 --NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
                     N + ++  D+ + I   +     K G   +PTQK + LL RIL +S+KPG
Sbjct: 238 GGMNFESIELNANGKVPEDFWVDIQRAARYPGEKTG---YPTQKSKKLLERILKASSKPG 294

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI-----ASVQPLGNIELTVL 279
           DI+ D F GSGT+ AVA +L R FIG ++    I+  TKR+          + +++ T  
Sbjct: 295 DIVFDCFMGSGTTQAVAMELGRKFIGADINLGAIETTTKRLNISREKITSKVPDVDFTNE 354

Query: 280 TGKRTEPRVAF---------NLLVERGLIQPGQILTNAQGNISATVCADGTLISGT---- 326
            G+  + +  +         N  V R  +Q  +IL   +  +      + T+  G     
Sbjct: 355 DGETEKIKDFYTGFSVYNVNNYDVFRNPVQAKEIL---KQALEIQPLPNNTIYDGEKDGR 411

Query: 327 --ELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
             ++  ++R+  +   +E  +G+N+  F+K  E   
Sbjct: 412 MVKIMPVNRIATRADLNELISGFNYKSFQKKFEKQP 447


>gi|323344448|ref|ZP_08084673.1| DNA methylase [Prevotella oralis ATCC 33269]
 gi|323094575|gb|EFZ37151.1| DNA methylase [Prevotella oralis ATCC 33269]
          Length = 278

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 75/283 (26%), Positives = 119/283 (42%), Gaps = 39/283 (13%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ-------LNGQLYRPDHSLVDAV 68
           + E+ +KII  N + VL+KLP  S+DL+   PPYNL+        +G+  +  ++ +   
Sbjct: 2   LEEYLNKIINANCMEVLKKLPNNSIDLVVTSPPYNLKNSTGNGMKDGRGGKWSNAALIKG 61

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
            DS+D     + Y  +    LL   RV+K +G ++    Y++ +R+   L      I+ D
Sbjct: 62  YDSYDDCMPNDEYAKWQHEVLLELVRVIKDDGAIF----YNHKWRVQNGLMQDRHDIVYD 117

Query: 129 -----IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
                I+  K     NF    F   +E + + +          N                
Sbjct: 118 VPLRQIIIWKRKGGINFNAGYFLPTYEVIYFIAKKDFKLAPHSNNYGD-----------V 166

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           W I           ++    HP   P  L+ RI+ S+T    IILDPF GSGT+  VA  
Sbjct: 167 WEIM----------QEQRNDHPAPFPVELIDRIISSTT--SQIILDPFMGSGTTAVVAAG 214

Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
           L R FIGIE    Y ++A +R+   +    +         T+P
Sbjct: 215 LGRDFIGIEKSPKYCEVAMQRLERNKINSEVAKFHQPTFFTKP 257


>gi|309783469|ref|ZP_07678172.1| DNA (cytosine-5-)-methyltransferase [Ralstonia sp. 5_7_47FAA]
 gi|308917755|gb|EFP63449.1| DNA (cytosine-5-)-methyltransferase [Ralstonia sp. 5_7_47FAA]
          Length = 273

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 73/257 (28%), Positives = 118/257 (45%), Gaps = 27/257 (10%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I   + I+ +  L   SVDL+ ADPPY L   G+ Y  D   +             +A
Sbjct: 7   DGIFNEDCITGVGHLADGSVDLVIADPPYGL---GKDYGNDSDKLSG-----------DA 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y A++  W+ A R  L  NG+L++  ++     +  ML+     ++N+I+W +  P    
Sbjct: 53  YLAWSERWIDAVRPKLARNGSLYLFCTWQYAPELFVMLKQ-RLTMVNEIIWDRRVPSMGG 111

Query: 141 RGRRFQNAHETLIW------ASPSPKAKGYTFNYDALKAANEDVQMRSDWL------IPI 188
             R+F + H+ + +            A    ++ +  KA +        WL        +
Sbjct: 112 STRKFSSVHDNIGFFAASRDYYFDVDAVRIPYDAETKKARSRKRFEGKKWLEVGYNPKDV 171

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
            S S   R       HPTQKP  L+ R++++S  PG ++LDPF GSGT+ A   +L R F
Sbjct: 172 WSVSRLHRQDPERAEHPTQKPLELVERMILASCPPGGLVLDPFLGSGTTAAACARLGRRF 231

Query: 249 IGIEMKQDYIDIATKRI 265
            G E+  DY  +A +R+
Sbjct: 232 AGFEINADYCRVARERV 248


>gi|126175812|ref|YP_001051961.1| DNA methylase N-4/N-6 domain-containing protein [Shewanella baltica
           OS155]
 gi|125999017|gb|ABN63092.1| DNA methylase N-4/N-6 domain protein [Shewanella baltica OS155]
          Length = 296

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 124/296 (41%), Gaps = 57/296 (19%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           E  +KI  G+S++ L+ LP  S+D I   PPY  Q +             +       S 
Sbjct: 5   ELANKIFTGDSLASLKALPKNSIDCIVTSPPYYGQRDY-----------GMDGQIGNESK 53

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLW-VIGSYHN-------IFRIGTMLQNLNFWILNDI 129
            E Y          C+RVLK +G+LW  +G  +N        +R+   LQ+  + + NDI
Sbjct: 54  LEEYIENLVNIFNECKRVLKDSGSLWLNLGDKYNKGNLMGMPWRVALALQDEGWILRNDI 113

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED------------ 177
           +W K N MP+    R    HE + + +   KAK Y ++ DA++  ++             
Sbjct: 114 IWHKPNAMPHSAKNRLTTDHEYIFFFTK--KAKDYYYDQDAIREEHKTFSEDSKMKGGRN 171

Query: 178 --------------------VQMRSDW-LIPICSGSERLRNKDGEKL---HPTQKPEALL 213
                                  R D    P       + N    K    H    PE L+
Sbjct: 172 HFGKNGGTPEKGKNSGNSNLHDGRWDQAFHPNGRNKRTVWNVPLSKFRGAHFAVFPERLI 231

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
              +++      I+LDPFFG+GT+G VA +  R ++G+E+  +Y +IA  R+ +VQ
Sbjct: 232 EPCILAGCPKNGIVLDPFFGAGTTGFVAAQQGRKYVGLELNPEYAEIAENRLKTVQ 287


>gi|311221492|gb|ADP76553.1| DNA methyltransferase [Helicobacter pylori]
          Length = 587

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 75/247 (30%), Positives = 112/247 (45%), Gaps = 23/247 (9%)

Query: 22  KIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDKFSSF 78
           +I   ++  +++    +   VD I  DPPYN+ +         +    +    WDK    
Sbjct: 358 QIYHADAFEIIKDFYQQNLKVDAIITDPPYNISVKNNFPTLKSAKRQGIDFGEWDK---- 413

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
              +     W+     ++ PNG + +  SY  I  I   L+   F + + I W K+NPMP
Sbjct: 414 ---NFKLLEWIARYAPLVNPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMP 470

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
               RR+    E  +WA        + FN    K  NE           + SG E+ +  
Sbjct: 471 RNIHRRYVQDTEFALWAVKKKA--KWVFN----KPKNEKYLRPLILKSTVVSGLEKTK-- 522

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQK  AL+ +I+   T P DI+LDPF GSGT+G   K L R+FIGIE +++Y 
Sbjct: 523 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKNLERNFIGIESEKEYF 577

Query: 259 DIATKRI 265
             A KR+
Sbjct: 578 QTAKKRL 584


>gi|320159894|ref|YP_004173118.1| methyltransferase [Anaerolinea thermophila UNI-1]
 gi|319993747|dbj|BAJ62518.1| methyltransferase [Anaerolinea thermophila UNI-1]
          Length = 391

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 82/277 (29%), Positives = 119/277 (42%), Gaps = 27/277 (9%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
           +Q N+ +   NQ    E  ++I  G+S+ VL+K+P  S+DLIF  PPYN  L        
Sbjct: 130 AQDNNFSKISNQLP-PEMTNQIFCGDSLEVLKKIPDNSIDLIFTSPPYNFGLEY------ 182

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV-----IGSY-HNIFRIG 115
                   +  D    ++ Y     A    C RVLK  G + V        Y  +   I 
Sbjct: 183 --------ERQDDAHKWDLYFEKLFAIFDECIRVLKFGGRIAVNIQPLFSDYIPSHHLIS 234

Query: 116 TMLQNLNFWILNDIVWRKSNP----MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
               +       +I+W K+N           +   N +    W      AKG        
Sbjct: 235 NFFISRRMIWKGEILWEKNNYNCKYTAWGSWKSPSNPYLKYTWEFIEIFAKGTLKKSGDP 294

Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
           K A+       +W++   S +     K  E  HP   PE L  R++   +  GDI+LDPF
Sbjct: 295 KNADITSDEFKEWVVAKWSIA--PERKMKEFGHPAMFPEKLAERVIKLFSFVGDIVLDPF 352

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            G GT+ AVA+KL R FIGI++ Q+Y DIA KR+ + 
Sbjct: 353 NGVGTTTAVAQKLGRKFIGIDISQEYCDIAQKRLKNT 389


>gi|208434020|ref|YP_002265686.1| adenine specific DNA methyltransferase (putative type II)
           [Helicobacter pylori G27]
 gi|208431949|gb|ACI26820.1| adenine specific DNA methyltransferase (putative type II)
           [Helicobacter pylori G27]
          Length = 232

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 77/247 (31%), Positives = 115/247 (46%), Gaps = 23/247 (9%)

Query: 22  KIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDKFSSF 78
           +I   ++  +++    +   VD I  DPPYN+ +         +    +    WDK    
Sbjct: 3   QIYHADAFEIIKDFYQQNLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDK---- 58

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
              +     W+     ++ PNG + +  SY  I  I   L+   F + + I W K+NPMP
Sbjct: 59  ---NFRLLEWIKRYAPLINPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKTNPMP 115

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
               RR+    E  +WA        + FN    K  NE          P+ SG ER++  
Sbjct: 116 RNIHRRYVQDTEFALWAVKKKA--KWVFN----KPKNEKYLRPLILKSPVVSGLERVK-- 167

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQK  AL+ +I+   T P DI+LDPF GSGT+G   K L+R+FIGIE +++Y 
Sbjct: 168 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKNLKRNFIGIESEKEYF 222

Query: 259 DIATKRI 265
             A KR+
Sbjct: 223 QTAKKRL 229


>gi|108562471|ref|YP_626787.1| adenine specific DNA methyltransferase [Helicobacter pylori HPAG1]
 gi|107836244|gb|ABF84113.1| adenine specific DNA methyltransferase [Helicobacter pylori HPAG1]
          Length = 230

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 76/248 (30%), Positives = 115/248 (46%), Gaps = 23/248 (9%)

Query: 22  KIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDKFSSF 78
           +I   ++  +++    +   VD I  DPPYN+ +         +    +    WDK    
Sbjct: 3   QIYHADAFEIIKDFYQQNLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDK---- 58

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
              +     W+     ++ PNG + +  SY  I  I   L+   F + + I W K+NPMP
Sbjct: 59  ---NFKLLEWIKRYAPLVNPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKTNPMP 115

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
               RR+    E  +WA        + FN    K  NE          P+ SG E+ +  
Sbjct: 116 RNIHRRYVQDTEFALWAVKKKA--KWVFN----KPKNEKYLRPLILKSPVVSGIEKTK-- 167

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQK  AL+ +I+   T P DI+LDPF GSGT+G   K L+R+FIGIE +++Y 
Sbjct: 168 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKNLKRNFIGIESEKEYF 222

Query: 259 DIATKRIA 266
             A KR++
Sbjct: 223 QTAQKRLS 230


>gi|15643096|ref|NP_228139.1| m4C-methyltransferase [Thermotoga maritima MSB8]
 gi|4980829|gb|AAD35415.1|AE001714_6 m4C-methyltransferase [Thermotoga maritima MSB8]
          Length = 329

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 64/277 (23%), Positives = 107/277 (38%), Gaps = 46/277 (16%)

Query: 13  QNSIFE-WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
           +N + E   DK+I+G++  VL+K+P  S+ L+   PPYN+                    
Sbjct: 67  ENPLPENLLDKVIEGDAREVLKKIPDCSIHLMVTSPPYNVGK-----------------E 109

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN-------IFRIGTMLQNLNFW 124
           +D+  + + Y  F    +    RVL   G      +             +  + + + F 
Sbjct: 110 YDEDMTLDEYLEFIEEIMKEVYRVLVWGGRACFNVANLGRKPYIPLHAYLIHLFEKIGFL 169

Query: 125 ILNDIVWRKSNPM----------PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
           I  +I+W K   +           +      ++ HE +I  S     +    + +A    
Sbjct: 170 IRGEIIWDKGEAVSGSSTAWGSWMSPVNPVLRDQHEYIIVMSKGDLKRRKPSDREAKSTI 229

Query: 175 NEDVQ---MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
             +      RS W  P  S             HP   PE L  R +   T  GD++LDPF
Sbjct: 230 TREEFLEFTRSVWKFPPESAK--------RVGHPAPFPEELPYRCIQLYTFKGDVVLDPF 281

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            G GT+   A K  R F+GIE+  +Y+  A +R+  +
Sbjct: 282 AGVGTTCVAAVKTGRHFVGIEINPEYVKKAEERVKDI 318


>gi|87042330|gb|ABD16204.1| M1.NcuI methyltransferase [Moraxella cuniculi]
          Length = 259

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 77/266 (28%), Positives = 112/266 (42%), Gaps = 45/266 (16%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   N    LEK+  KS+ L   DPPYNL                    WD F     
Sbjct: 4   NKIYHMNCFDFLEKIQNKSIQLAVIDPPYNLNKA----------------DWDSFDDHNE 47

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           + AFT  W+      L  NG++++  +  N   I   L +      N I W K + M   
Sbjct: 48  FLAFTYRWIDKVLDKLDKNGSIYIFNTPFNCAFICQYLVSKGMIFQNWITWDKRDGMG-S 106

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ--------------------- 179
             RRF    ET+++ S    +K +TFNYD ++   E                        
Sbjct: 107 AKRRFSTGQETILFFSK---SKNHTFNYDEVRVPYESTDRIKHASEKGILKNGQRWFPNP 163

Query: 180 ----MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
                   W        E++  K  +  H T KP  L+ RI+ +S+ P D++LD F GSG
Sbjct: 164 NGRLCGEVWHFSSQRHKEKVNGKTVKLSHITPKPHDLIERIIKASSNPNDLVLDCFMGSG 223

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIA 261
           T+  VAKKL R+FIG ++  +Y++ A
Sbjct: 224 TTAIVAKKLGRNFIGCDINTEYVEQA 249


>gi|113868574|ref|YP_727063.1| DNA-methyltransferase [Ralstonia eutropha H16]
 gi|113527350|emb|CAJ93695.1| DNA-Methyltransferase [Ralstonia eutropha H16]
          Length = 308

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 67/257 (26%), Positives = 117/257 (45%), Gaps = 27/257 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++ + +    + +LP  SVDLI ADPPY L   G+ Y  D  L+             + Y
Sbjct: 29  RLFQEDMFEGIARLPDGSVDLIVADPPYGL---GKDYGNDSDLLSG-----------QEY 74

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             ++  W+ A    L P GTL++  ++     +  ML+     ++N+I+W +  P     
Sbjct: 75  LDWSERWMNAVVPKLAPKGTLYLFCTWQYSPELFVMLKR-RLTMINEIIWDRRVPSMGGT 133

Query: 142 GRRFQNAHETLIWASPSPKAK------GYTFNYDALKAANEDVQMRSDWL------IPIC 189
            R+F + H+ + + + +             ++ +  KA +        WL        + 
Sbjct: 134 TRKFSSVHDNIGFFARARDYYFDLDPVRIPYDPETKKARSRPRFEGKKWLEVGYNPKDLW 193

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           S S   R       HPTQKP  ++ R+++SS  PG ++LDPF GSGT+     +  R F 
Sbjct: 194 SVSRIHRQDPERANHPTQKPLEIVERMVLSSCPPGGLVLDPFAGSGTTAVACLRHGRRFA 253

Query: 250 GIEMKQDYIDIATKRIA 266
           G E+  +Y+ +A  R++
Sbjct: 254 GFEINPEYVQVACDRVS 270


>gi|148269728|ref|YP_001244188.1| DNA methylase N-4/N-6 domain-containing protein [Thermotoga
           petrophila RKU-1]
 gi|170288403|ref|YP_001738641.1| DNA methylase N-4/N-6 domain-containing protein [Thermotoga sp.
           RQ2]
 gi|222099314|ref|YP_002533882.1| M4C-methyltransferase [Thermotoga neapolitana DSM 4359]
 gi|147735272|gb|ABQ46612.1| DNA methylase N-4/N-6 domain protein [Thermotoga petrophila RKU-1]
 gi|170175906|gb|ACB08958.1| DNA methylase N-4/N-6 domain protein [Thermotoga sp. RQ2]
 gi|221571704|gb|ACM22516.1| M4C-methyltransferase [Thermotoga neapolitana DSM 4359]
          Length = 308

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 64/277 (23%), Positives = 107/277 (38%), Gaps = 46/277 (16%)

Query: 13  QNSIFE-WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
           +N + E   DK+I+G++  VL+K+P  S+ L+   PPYN+                    
Sbjct: 46  ENPLPENLLDKVIEGDAREVLKKIPDCSIHLMVTSPPYNVGK-----------------E 88

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN-------IFRIGTMLQNLNFW 124
           +D+  + + Y  F    +    RVL   G      +             +  + + + F 
Sbjct: 89  YDEDMTLDEYLEFIEEIMKEVYRVLVWGGRACFNVANLGRKPYIPLHAYLIHLFEKIGFL 148

Query: 125 ILNDIVWRKSNPM----------PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
           I  +I+W K   +           +      ++ HE +I  S     +    + +A    
Sbjct: 149 IRGEIIWDKGEAVSGSSTAWGSWMSPVNPVLRDQHEYIIVMSKGDLKRRKPSDREAKSTI 208

Query: 175 NEDVQ---MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
             +      RS W  P  S             HP   PE L  R +   T  GD++LDPF
Sbjct: 209 TREEFLEFTRSVWKFPPESAK--------RVGHPAPFPEELPYRCIQLYTFKGDVVLDPF 260

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            G GT+   A K  R F+GIE+  +Y+  A +R+  +
Sbjct: 261 AGVGTTCVAAVKTGRHFVGIEINPEYVKKAEERVKDI 297


>gi|56962596|ref|YP_174322.1| adenine-specific DNA methylase [Bacillus clausii KSM-K16]
 gi|56908834|dbj|BAD63361.1| adenine-specific DNA methylase [Bacillus clausii KSM-K16]
          Length = 403

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 119/291 (40%), Gaps = 36/291 (12%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I  G+ +  L+K+P +SVDLI+ DPP+  Q   +L   D+       DSW+   S + Y 
Sbjct: 3   IFLGDCLEQLKKIPDESVDLIYLDPPFYTQKTQKLKTRDNQKEYYFEDSWE---SIQEYF 59

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMPNF 140
            F +  L  C RVLK  G++++         +   L  +       ++I+W       + 
Sbjct: 60  NFIKVRLEECHRVLKKTGSIFLHCDKSASHYLRVALDEVFGMDKFQSEIIWAYKRWSNSK 119

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ--------------------- 179
            G    N H+T+ + S + K K      D     N D                       
Sbjct: 120 VG--LLNNHQTIYFYSKTKKFKFNKIYTDYSATTNIDQILQERVRDENAKSVYKVDENGK 177

Query: 180 ------MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
                  +   L  + +             +PTQKP  L+ +IL   T  GD +LDPF G
Sbjct: 178 PIIGKEKKGVPLSDVWNIPFLNPKAKERTGYPTQKPILLIEQILKLVTDEGDKVLDPFCG 237

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
           SGT+   A  + R +IGI++ +D I +  +R+ +  P+      +  G++ 
Sbjct: 238 SGTTLVTANIMNRKYIGIDISEDAIQLTKQRLEN--PIKTSSHLLNKGEKE 286


>gi|308177941|ref|YP_003917347.1| site-specific DNA-methyltransferase [Arthrobacter arilaitensis
           Re117]
 gi|307745404|emb|CBT76376.1| site-specific DNA-methyltransferase [Arthrobacter arilaitensis
           Re117]
          Length = 308

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 71/275 (25%), Positives = 122/275 (44%), Gaps = 34/275 (12%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK------ 74
           + +  G+++S+L  LP +S  LI+ DPP+N     +  R   ++V A     D+      
Sbjct: 28  NTVYHGDNLSILGSLPDQSFTLIYVDPPFNTGR--KQTRAQRTMVRAAEGEGDRTGFKGR 85

Query: 75  ------------FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL- 121
                         +F+ Y +F    L    R+L  +GTL+V   Y  +  +  +L  + 
Sbjct: 86  EYNTELGIARSYHDTFDDYLSFIEPRLREAHRLLAEDGTLYVHLDYREVHYVKVLLDQIF 145

Query: 122 -NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN--------YDALK 172
                LN+++W            R+   H+T++     P  K Y F+        Y A  
Sbjct: 146 GRDCFLNELIWAYDYGA--RAKSRWPAKHDTILVYVKDP--KQYHFDSAEVDREPYMAPG 201

Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
               + +        +   +        +  +PTQKPE +L RI+ +S++PGD++LD F 
Sbjct: 202 LVTPEKRALGKLPTDVWWHTIVSPTGKEKTGYPTQKPEGVLRRIVAASSRPGDLVLDFFA 261

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           GSGT+GAVA KL R F+ I+   + I++   R+  
Sbjct: 262 GSGTTGAVAAKLGRQFVLIDQNPEAIEVMKARLPE 296


>gi|206975209|ref|ZP_03236123.1| DNA methylase [Bacillus cereus H3081.97]
 gi|206746630|gb|EDZ58023.1| DNA methylase [Bacillus cereus H3081.97]
          Length = 240

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 69/252 (27%), Positives = 114/252 (45%), Gaps = 18/252 (7%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ---LNGQLYRPDHSLVDAVTDSWDKFSS 77
           + +   + I  ++K+    +DLI  DPPYNL     N              T  WD    
Sbjct: 4   NILYNDDCIKSMKKIETNKIDLIVTDPPYNLGNFMRNRDTNLKKMRENFFATAGWDDME- 62

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           F+ +     ++     RV+K  G++ V  +   +  + ++ +   F+     +W K+NPM
Sbjct: 63  FDEWKDSMDSFFEESARVMKKGGSMIVFMAIIKVETLISLAEKHGFYYKTTGIWHKTNPM 122

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           P      F N+ E  ++         +T+        NE           + S +E+   
Sbjct: 123 PRNMNLHFVNSTEAWVY---------FTYKTRTGTFNNEGALFHDFIETSLTSSTEKKYG 173

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K     HPTQKPE+L+   +   +   D +LDPF GSGT+G V K+L R+FIG+E+ Q+Y
Sbjct: 174 K-----HPTQKPESLIKHFVELLSNANDWVLDPFMGSGTTGVVTKRLSRNFIGVELDQEY 228

Query: 258 IDIATKRIASVQ 269
            +IA  RI  ++
Sbjct: 229 FNIAQSRIEEIE 240


>gi|241663406|ref|YP_002981766.1| DNA methylase N-4/N-6 domain-containing protein [Ralstonia
           pickettii 12D]
 gi|240865433|gb|ACS63094.1| DNA methylase N-4/N-6 domain protein [Ralstonia pickettii 12D]
          Length = 273

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 74/256 (28%), Positives = 118/256 (46%), Gaps = 27/256 (10%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I   + I+ +  L   SVDL+ ADPPY L   G+ Y  D   +             +A
Sbjct: 7   DGIFNEDCITGVGHLADGSVDLVIADPPYGL---GKDYGNDSDKLSG-----------DA 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y A++  W+ A R  L  NG+L++  ++     +  ML+     ++N+I+W +  P    
Sbjct: 53  YLAWSERWIDAVRPKLARNGSLYLFCTWQYAPELFVMLKQ-RLTMVNEIIWDRRVPSMGG 111

Query: 141 RGRRFQNAHETLIW------ASPSPKAKGYTFNYDALKAANEDVQMRSDWL------IPI 188
             R+F + H+ + +            A    ++ +  KA +        WL        +
Sbjct: 112 STRKFSSVHDNIGFFAASRDYYFDVDAVRIPYDAETKKARSRKRFEGKKWLEVGYNPKDV 171

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
            S S   R       HPTQKP  L+ R++++S  PG ++LDPF GSGT+ AV  +L R F
Sbjct: 172 WSVSRLHRQDPERAEHPTQKPLELVERMILASCPPGGLVLDPFLGSGTTAAVCARLGRRF 231

Query: 249 IGIEMKQDYIDIATKR 264
            G E+  DY  +A +R
Sbjct: 232 AGFEINADYCRVARER 247


>gi|308183850|ref|YP_003927983.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter pylori
           SJM180]
 gi|308059770|gb|ADO01666.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter pylori
           SJM180]
          Length = 232

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 76/247 (30%), Positives = 113/247 (45%), Gaps = 23/247 (9%)

Query: 22  KIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDKFSSF 78
           +I   ++  +++    +   VD I  DPPYN+ +         +    +    WDK    
Sbjct: 3   QIYHADAFEIIKDFYQQNLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDK---- 58

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
              +     W+     ++ PNG + +  SY  I  I   L+   F + + I W K+NPMP
Sbjct: 59  ---NFKLLEWITRYAPLVNPNGCIIIFCSYRFISYIADFLEENGFVVKDFIQWVKTNPMP 115

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
               RR+    E  +WA        + FN    K  NE          P+ SG E+ +  
Sbjct: 116 RNIHRRYVQDTEFALWAVKKKA--KWVFN----KPKNEKYLRPLILKSPVVSGLEKTK-- 167

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQK  AL+ +I+   T P DI+LDPF GSGT+G   K L R+FIGIE +++Y 
Sbjct: 168 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKNLERNFIGIESEKEYF 222

Query: 259 DIATKRI 265
             A KR+
Sbjct: 223 QTAKKRL 229


>gi|269925476|ref|YP_003322099.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269789136|gb|ACZ41277.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 289

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 124/291 (42%), Gaps = 32/291 (10%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYN-----------LQLNGQLYRPDHSLVDAVT 69
           +KI  G+++ VLE LP+ SV+LI+ DPP+N           +  + Q  R        +T
Sbjct: 5   NKIFFGDNLRVLESLPSNSVNLIYIDPPFNTGRRQVRISMSVDRDDQGDRKGFGGYKYLT 64

Query: 70  DSWDKFSS---FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFW 124
               K S    ++ Y AF    L    RVL  NG L+    Y  +     +L ++     
Sbjct: 65  KVLGKLSFDDIYDDYLAFLEPRLREAHRVLTANGALYFHIDYREVHYCKILLDSIFGRDN 124

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN--------YDALKAANE 176
            LN+I+W           R++   H+ +++         Y FN        Y A      
Sbjct: 125 FLNEIIWAYDYGG--RSKRKWPTKHDNILYYVKD--RNNYVFNADEIDRLPYMAPSLVGG 180

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
           D          +   +        +  +PTQKP A+L RI+ +S+ PGDI+LD F GSGT
Sbjct: 181 DKAKLGKLPTDVWWQTIVSPTGKEKTGYPTQKPLAILERIIRASSCPGDIVLDFFAGSGT 240

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
           +G  A KL RSFI ++  ++ I +   R   V     +E   L   + E +
Sbjct: 241 TGVAAHKLGRSFILVDNNEEAIRVMRSRFRDV----PVEFITLEDYKYEDK 287


>gi|317179855|dbj|BAJ57641.1| adenine specific DNA methyltransferase [Helicobacter pylori F32]
          Length = 232

 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 78/247 (31%), Positives = 116/247 (46%), Gaps = 23/247 (9%)

Query: 22  KIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDKFSSF 78
           +I   N+  +++    +   VD I  DPPYN+ +         +    +    WDK    
Sbjct: 3   QIYHANAFEIIKDFYQQNLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDK---- 58

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
              +     W+     ++ PNG + +  SY  I  I   L+   F + + I W K+NPMP
Sbjct: 59  ---NFKLLEWIKRYAPLVNPNGCMVIFCSYRFISYIADFLEENGFIVKDFIQWVKNNPMP 115

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
               RR+    E  +WA        + FN    K  NE          P+ SG ER++  
Sbjct: 116 RNINRRYVQDTEFALWAVKKKA--KWVFN----KPKNEKYLRPLILKSPVVSGLERVK-- 167

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQK   L+ +I+   T P DI+LDPF GSGT+G   K+L+R+FIGIE +++Y 
Sbjct: 168 -----HPTQKSLDLMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLKRNFIGIESEKEYF 222

Query: 259 DIATKRI 265
            IA KR+
Sbjct: 223 QIAKKRL 229


>gi|283783020|ref|YP_003373774.1| DNA (cytosine-5-)-methyltransferase [Gardnerella vaginalis 409-05]
 gi|298253560|ref|ZP_06977350.1| DNA modification methylase [Gardnerella vaginalis 5-1]
 gi|283442049|gb|ADB14515.1| DNA (cytosine-5-)-methyltransferase [Gardnerella vaginalis 409-05]
 gi|297532327|gb|EFH71215.1| DNA modification methylase [Gardnerella vaginalis 5-1]
          Length = 239

 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 77/253 (30%), Positives = 118/253 (46%), Gaps = 24/253 (9%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS------WD 73
           K ++   + I  ++ L AKS+DLI  DPPYNL   G   +   + +  + D+      WD
Sbjct: 3   KIELYNDDCIVAMDNLRAKSIDLIVTDPPYNL---GSFMKTRDTNLKKMRDNFFAAAGWD 59

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
               FE +     ++     RV+K  G++ V  +   +  I  + +   F+     +W K
Sbjct: 60  DM-GFEEWKKSMESFFELSSRVMKKGGSMIVFMAIIKVETIIKLAEEYGFYYKTTGIWHK 118

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
           +NPMP      F N+ E  ++         +T+        N            +   SE
Sbjct: 119 TNPMPRNMNLHFVNSTEAWVY---------FTYKTKTGTFNNGGAMFHDFIETSVTPNSE 169

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           R   K     HPTQKPE+L+   +   + PGD ILDPF GSGT+G V+K+  R+FIGIE+
Sbjct: 170 RKYGK-----HPTQKPESLMQHFVEILSNPGDNILDPFMGSGTTGVVSKRAGRNFIGIEL 224

Query: 254 KQDYIDIATKRIA 266
             +Y +IA  RI 
Sbjct: 225 NSEYYNIAKSRIE 237


>gi|291571854|dbj|BAI94126.1| type II DNA modification methyltransferase [Arthrospira platensis
           NIES-39]
          Length = 295

 Score =  179 bits (453), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 81/285 (28%), Positives = 135/285 (47%), Gaps = 33/285 (11%)

Query: 17  FEWKDKIIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
            + +  +  G++I +L  ++ A SV+LIF DPPYN+                 ++  D++
Sbjct: 6   QDDRHTLFHGDAIQILSSQIAANSVNLIFVDPPYNIGKK-------------FSNFHDQW 52

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
           +S E Y  ++  WL  C RVLKPNGTL+V+ S  ++      L+     IL+ IVW   +
Sbjct: 53  NSEEDYINWSYQWLDECVRVLKPNGTLYVMTSTQSMPYFDIYLRQ-KMSILSRIVWHYDS 111

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR--SDWLIPI----- 188
                  + F + +E ++        K Y FN   +K   +    R   D+  P+     
Sbjct: 112 SGVQ-AKKYFGSMYEPILHCVKDQ--KNYIFNSADIKVEAQTGAQRKLIDYRKPVPTQYN 168

Query: 189 --------CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
                                + HP QKPE+LL RI+++ST   D++LDPF G+ T+ AV
Sbjct: 169 SEKVPGNVWYFPRVRYRMAEYENHPAQKPESLLERIILASTNKHDLVLDPFAGTFTTAAV 228

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           AK+L R  + IE +++Y+ I  +R+   Q     +L   +  +T+
Sbjct: 229 AKRLGRFSLSIESQEEYLKIGLRRVLGWQEYQGEKLLPPSKNQTK 273


>gi|330820900|ref|YP_004349762.1| DNA modification methylase [Burkholderia gladioli BSR3]
 gi|327372895|gb|AEA64250.1| DNA modification methylase [Burkholderia gladioli BSR3]
          Length = 286

 Score =  179 bits (453), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 78/266 (29%), Positives = 128/266 (48%), Gaps = 37/266 (13%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           E + +    + ++    LP  S+DLI ADPPY L   G+ Y  D   +            
Sbjct: 37  ELRHR----DFLTDAASLPDASIDLIVADPPYGL---GKDYGNDSDKLQG---------- 79

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            +A+ A+TR WL      LKP+G+L+V  ++     I + L+     ++N+I+W +  P 
Sbjct: 80  -DAHLAWTRQWLELAIPKLKPSGSLYVFCTWQYAPEIFSFLK-TRLTMINEIIWDRRVPS 137

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR---------SDWL--- 185
                RRF + H+ + + +    +KGY F+ D ++   +    +         S WL   
Sbjct: 138 MGGTTRRFTSVHDNIGFFA---VSKGYYFDLDPVRIPYDAETKKARSRKLFEGSKWLEMG 194

Query: 186 ---IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
                + S S   R       HPTQKP  L+ R+++SS  PG ++LDPF GSGT+   + 
Sbjct: 195 YNPKDVWSVSRLHRQHAERVDHPTQKPLELVERMVLSSCPPGGVVLDPFMGSGTTAVASA 254

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASV 268
           +  R FIG E+ + Y  IA +R+ ++
Sbjct: 255 RHGRRFIGYEINESYCAIARERVTAL 280


>gi|284052959|ref|ZP_06383169.1| putative methyltransferase [Arthrospira platensis str. Paraca]
          Length = 295

 Score =  179 bits (453), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 81/285 (28%), Positives = 135/285 (47%), Gaps = 33/285 (11%)

Query: 17  FEWKDKIIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
            + +  +  G++I +L  ++ A SV+LIF DPPYN+                 ++  D++
Sbjct: 6   QDDRHTLFHGDAIQILSSQIAANSVNLIFVDPPYNIGKK-------------FSNFHDQW 52

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
           +S E Y  ++  WL  C RVLKPNGTL+V+ S  ++      L+     IL+ IVW   +
Sbjct: 53  NSEEDYINWSYQWLDECVRVLKPNGTLYVMTSTQSMPYFDIYLRQ-KMSILSRIVWHYDS 111

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR--SDWLIPI----- 188
                  + F + +E ++        K Y FN   +K   +    R   D+  P+     
Sbjct: 112 SGVQ-AKKYFGSMYEPILHCVKD--RKNYIFNSADIKVEAKTGAQRKLIDYRKPVPTQYN 168

Query: 189 --------CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
                                + HP QKPE+LL RI+++ST   D++LDPF G+ T+ AV
Sbjct: 169 SEKVPGNVWYFPRVRYRMAEYENHPAQKPESLLERIILASTNKHDLVLDPFAGTFTTAAV 228

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           AK+L R  + IE +++Y+ I  +R+   Q     +L   +  +T+
Sbjct: 229 AKRLGRFSLSIESQEEYLKIGLRRVLGWQEYQGEKLLPPSKNQTK 273


>gi|149923216|ref|ZP_01911628.1| putative DNA methylase [Plesiocystis pacifica SIR-1]
 gi|149815932|gb|EDM75449.1| putative DNA methylase [Plesiocystis pacifica SIR-1]
          Length = 324

 Score =  179 bits (453), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 114/293 (38%), Gaps = 36/293 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ--------------------LNGQLYRPD 61
           +I +GN++ +L   P  S DLI+ DPP+N                        G+ YR  
Sbjct: 35  EIFEGNNLELLAAQPDGSFDLIYIDPPFNTGRRQSRTRTRMVGDAEGDRRGFGGKRYRTI 94

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
                + +D      SF+ +  F    L+   R+L P G+ ++   Y        +L ++
Sbjct: 95  KVGTRSFSD------SFDDFLEFLEPRLVEAHRLLAPTGSFFLHIDYREAHYCKVLLDDI 148

Query: 122 --NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN------YDALKA 173
                 +N+++W           +R+ + H+T+ W +  PK   + F       Y A   
Sbjct: 149 FGRASFMNELIWAYDYGA--RSKKRWSSKHDTIFWYARDPKNYTFEFEAMDRIPYMAPGL 206

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
            + +   R      +   +           +PTQKP  +L RI+   ++PGD +LD F G
Sbjct: 207 VSAEKAARGKTPTDVWWHTIVPTKGKERTGYPTQKPLGILERIVKVHSRPGDRVLDFFAG 266

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
           SGT+G    KL R+   I+   + I +  +R+    P               P
Sbjct: 267 SGTTGEACAKLGRNCTLIDANPEAIAVMRRRLEFANPRIVEAERPSEQAIAAP 319


>gi|313667091|gb|ADR72989.1| M.BspEI [Bacillus sp. NEBM136]
          Length = 314

 Score =  179 bits (453), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 82/303 (27%), Positives = 132/303 (43%), Gaps = 45/303 (14%)

Query: 11  ENQNSIFEWKD---KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
                +  +K    K+  G+SI  L+ L  +SVDLIFADPPYN++               
Sbjct: 27  NKGEPLLHYKHNNGKLFLGDSIQWLKTLETESVDLIFADPPYNIKKA------------- 73

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
               WD F + E+Y  ++  W++   RVLK NG+L+ I  +  I        +  F    
Sbjct: 74  ---EWDTFENQESYIQWSLEWIVEASRVLKKNGSLY-ICGFSEILADLKHPASKYFKGCK 129

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSP-----------KAKGYTFNYDALKAANE 176
            +VW   N      G+ F  +HE+L+    +               G+T  Y +   A  
Sbjct: 130 WLVWHYKNKAN--LGKDFGRSHESLLHFRKTKKYTMNQDLVRIPYGGHTLKYPSHPQAES 187

Query: 177 DVQ---MRSDWLIPICSGSER---------LRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
                  + D  +P   G++              + +  HPTQKPE L+ + +++S+  G
Sbjct: 188 SQYGSGKKRDNWMPHPLGAKPKDVIEVPTTCNGMNEKTPHPTQKPEELVRKFILASSNRG 247

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
           D+ILDPF GSGT+  VA++L R ++  +  + Y + A +RI   +   + E      K  
Sbjct: 248 DVILDPFSGSGTTAVVAEQLGRKWLACDTNRQYNEWAIERIQKAEHKTDEEWFWYDRKNE 307

Query: 285 EPR 287
           E R
Sbjct: 308 ERR 310


>gi|254778782|ref|YP_003056887.1| Type II adenine methyltransferase [Helicobacter pylori B38]
 gi|254000693|emb|CAX28602.1| Type II adenine methyltransferase [Helicobacter pylori B38]
          Length = 232

 Score =  179 bits (453), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 76/247 (30%), Positives = 114/247 (46%), Gaps = 23/247 (9%)

Query: 22  KIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDKFSSF 78
           +I   ++  +++    +   VD I  DPPYN+ +         +    +    WDK    
Sbjct: 3   QIHHADAFEIIKDFYQQNLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDK---- 58

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
              +     W+     ++ PNG + +  SY  I  I   L+   F + + I W K+NPMP
Sbjct: 59  ---NFRLLEWIKRYAPLINPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKTNPMP 115

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
               RR+    E  +WA        + FN    K  NE          P+ SG E+ +  
Sbjct: 116 RNIHRRYVQDTEFALWAVKKKA--KWVFN----KPKNEKYLRPLILKSPVVSGLEKTK-- 167

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQK  AL+ +I+   T P DI+LDPF GSGT+G   K L+R+FIGIE +++Y 
Sbjct: 168 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKNLKRNFIGIESEKEYF 222

Query: 259 DIATKRI 265
             A KR+
Sbjct: 223 QTAKKRL 229


>gi|298737012|ref|YP_003729542.1| adenine-specific DNA-methyltransferase [Helicobacter pylori B8]
 gi|298356206|emb|CBI67078.1| adenine-specific DNA-methyltransferase [Helicobacter pylori B8]
          Length = 232

 Score =  179 bits (453), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 76/247 (30%), Positives = 111/247 (44%), Gaps = 23/247 (9%)

Query: 22  KIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDKFSSF 78
           +I   ++  +++        VD I  DPPYN+ +         +    +    WDK    
Sbjct: 3   QIHHADAFEIIKDFHQQDLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDK---- 58

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
              +     W+     ++ PNG + +  SY  I  I   L+   F + + I W K+NPMP
Sbjct: 59  ---NFKLLEWIKHYAPLVNPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMP 115

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
               RR+    E  +WA        + FN    K  NE          P+ SG E+ +  
Sbjct: 116 RNIHRRYVQDTEFALWAVKKKA--KWVFN----KPKNEKYLRPLILKSPVVSGLEKTK-- 167

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQK  AL+ +I+   T P DI+LDPF GSGT+G   K L R FIGIE +++Y 
Sbjct: 168 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKNLERKFIGIESEKEYF 222

Query: 259 DIATKRI 265
             A KR+
Sbjct: 223 QTAQKRL 229


>gi|320101941|ref|YP_004177532.1| DNA methylase N-4/N-6 domain-containing protein [Isosphaera pallida
           ATCC 43644]
 gi|319749223|gb|ADV60983.1| DNA methylase N-4/N-6 domain protein [Isosphaera pallida ATCC
           43644]
          Length = 336

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 86/302 (28%), Positives = 136/302 (45%), Gaps = 55/302 (18%)

Query: 21  DKIIK-GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           D++I  G+ I+ + +L  KSVDLIFADPP+N+                  D ++     +
Sbjct: 40  DQVIHVGDCIAGMNQLEDKSVDLIFADPPFNIGYTY--------------DVYNDRCDDQ 85

Query: 80  AYDAFTRAWLLACRRVLKPNGTLW-VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            Y A++R W+ A  RVL P GT W  IG          M + L       I+W  +  + 
Sbjct: 86  EYLAWSRRWIEAAVRVLSPTGTFWLAIGDDFAAELKVLMHRELGLTFRGWIIWYYTFGVH 145

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD--------------- 183
               R+F  +H  L++ +  P  + +TFN DA++  +   ++ +D               
Sbjct: 146 C--KRKFTRSHTHLLYFTRHP--RDFTFNADAIRVPSARQRVYNDKRAHPLGRVPDDTWI 201

Query: 184 ----------------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
                           W +P   G+ R    + +  H  Q PE +L RI+ + + PGD++
Sbjct: 202 LRPQDFPGGFGPDQSVWHVPRVCGTFR----ERQGWHGCQMPERILGRIMSACSNPGDLV 257

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
           LDPF GSGT+ AVA+KL R  +G E+  DY   A +R+ SV+P   ++          PR
Sbjct: 258 LDPFVGSGTTLAVARKLHRRGVGFELSADYAMNACQRLESVRPGDPLDGGDGLETLARPR 317

Query: 288 VA 289
             
Sbjct: 318 QP 319


>gi|317179559|dbj|BAJ57347.1| adenine specific DNA methyltransferase [Helicobacter pylori F30]
          Length = 232

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 78/247 (31%), Positives = 116/247 (46%), Gaps = 23/247 (9%)

Query: 22  KIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDKFSSF 78
           +I   N+  +++        VD I  DPPYN+ +         +    +    WDK    
Sbjct: 3   QIHHANAFEIIKDFYQQDLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDK---- 58

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
              +     W+     ++ PNG + +  SY  I  I   L+   F + + I W K+NPMP
Sbjct: 59  ---NFRLLEWIKRYASLVNPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKTNPMP 115

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
               RR+    E  +WA        + FN    K  NE          P+ SG ER++  
Sbjct: 116 RNIHRRYVQDTEFALWAVKKKA--KWVFN----KPKNEKYLRPLILKSPVVSGIERVK-- 167

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQK  AL+ +I+   T P DI+LDPF GSGT+G   K+L+R+FIGIE +++Y 
Sbjct: 168 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLKRNFIGIESEKEYF 222

Query: 259 DIATKRI 265
            I+ KR+
Sbjct: 223 QISKKRL 229


>gi|332672852|gb|AEE69669.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Helicobacter pylori 83]
          Length = 232

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 78/247 (31%), Positives = 115/247 (46%), Gaps = 23/247 (9%)

Query: 22  KIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDKFSSF 78
           +I   N+  +++        VD I  DPPYN+ +         +    +    WDK    
Sbjct: 3   QIHHANAFEIIKDFYQQDLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDK---- 58

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
              +     W+     ++ PNG + +  SY  I  I   L+   F + + I W K+NPMP
Sbjct: 59  ---NFRLLEWIKRYAPLVNPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMP 115

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
               RR+    E  +WA        + FN    K  NE          P+ SG ER++  
Sbjct: 116 RNISRRYVQDTEFALWAVKKKA--KWVFN----KPKNEKYLRPLILKSPVVSGLERVK-- 167

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQK   L+ +I+   T P DI+LDPF GSGT+G   K+L+R+FIGIE +++Y 
Sbjct: 168 -----HPTQKSLTLMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLKRNFIGIESEKEYF 222

Query: 259 DIATKRI 265
            IA KR+
Sbjct: 223 QIAKKRL 229


>gi|308061349|gb|ADO03237.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter pylori
           Cuz20]
          Length = 232

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 79/247 (31%), Positives = 115/247 (46%), Gaps = 23/247 (9%)

Query: 22  KIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDKFSSF 78
           +I   N+  +++    +   VD I  DPPYN+ +         +    +    WDK   F
Sbjct: 3   QIYHANAFEIIKDFYQQNLKVDAIITDPPYNISVKNNFSTLKSATRQGIDFGEWDKNFKF 62

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
                    W+     ++ PNG + +  SY  I  I   L+   F + + I W K+NPMP
Sbjct: 63  -------LEWIKRYAPLVNPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMP 115

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
               RR+    E  +WA        + FN    K  NE          P+  G ER++  
Sbjct: 116 RNINRRYVQDTEFALWAVKKKA--KWVFN----KPKNEKYLRPLILKSPVVGGLERVK-- 167

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQK  AL+ +I+   T P DI+LDPF GSGT+G   K+L R+FIGIE +++Y 
Sbjct: 168 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLERNFIGIESEKEYF 222

Query: 259 DIATKRI 265
            IA KR+
Sbjct: 223 QIAKKRL 229


>gi|315612933|ref|ZP_07887844.1| adenine specific DNA methylase [Streptococcus sanguinis ATCC 49296]
 gi|315315043|gb|EFU63084.1| adenine specific DNA methylase [Streptococcus sanguinis ATCC 49296]
          Length = 598

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 92/417 (22%), Positives = 167/417 (40%), Gaps = 79/417 (18%)

Query: 17  FEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS-- 71
             W +KI  G+++ V+  +  +    +DLI+ DPP++ + + +       +     DS  
Sbjct: 55  DNWINKIFWGDNLQVMSHMLKEYRGKIDLIYIDPPFDSKADYKKKIEIKGVGKTEADSSS 114

Query: 72  -----WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FW 124
                +    + + Y  F    L+  R +L  +GT+++   +H    +  ++  +     
Sbjct: 115 FEEKQYGDIWTNDEYLQFMYERLILLRELLSDSGTIFLHCDWHKSHHLRMLMDEVFSPNN 174

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP--------------------------- 157
            +++IVW   +       + F+  H+T++  S                            
Sbjct: 175 FIDEIVWGYEDIGSRAV-KYFKRKHDTILMYSKTASEDRTFNILRKRLSESTIKRYQSYF 233

Query: 158 ------------------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
                               K KG   +         +    SDW + I +         
Sbjct: 234 DDDGKISYQKLKDTNPGVFAKLKGIPEDLSETWLDINNGAPLSDWWVDISALKNGFAEAT 293

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G   +PTQKPEALL RI+++S+ PGD++ D F GSGT+ AVA +L R FIG ++    + 
Sbjct: 294 G---YPTQKPEALLERIIMASSNPGDLVFDCFMGSGTTQAVAMRLGRRFIGSDINLGAVQ 350

Query: 260 IATKRIASVQP-------LGNIELTVLTGKR--TEPRVAFNLLVERGLIQPGQILTNAQG 310
            ATKR+ ++           N+E+  +        P  A NL+VE   IQP +     QG
Sbjct: 351 TATKRLINLAKEIQLDDIYDNLEVYNVNNYDFFRNPIEAKNLIVEALEIQPFK-----QG 405

Query: 311 NISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRIL 367
           NI      DG ++   ++  ++R+  K    E      +  +EK+ E +    +  +
Sbjct: 406 NIWDGEL-DGRMV---KIMPVNRIATKADLEELKANLPYKTYEKIKEENPRQVVEQI 458


>gi|261393408|emb|CAX51044.1| putative DNA modification methylase [Neisseria meningitidis 8013]
 gi|325205032|gb|ADZ00486.1| adenine-specific methyltransferase HpaI [Neisseria meningitidis
           M01-240355]
          Length = 255

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 74/273 (27%), Positives = 129/273 (47%), Gaps = 41/273 (15%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ-------LNGQLYRPD 61
           +N  ++++ E+++K +KG+S+ +++ +P+ S+DLI   PPYNL+        +G+  +  
Sbjct: 4   LNLEKDTLAEFRNKFLKGDSLEIMKSIPSGSIDLIVTSPPYNLKNSTGNGMKDGRGGKWK 63

Query: 62  H-SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           + SL++  +D  D     E Y  + R  L    R+LK +G ++    Y++ +R+   L  
Sbjct: 64  NASLINGYSDHNDCMPHHE-YVEWQRNCLSEMYRLLKDDGAIF----YNHKWRVQGGLLQ 118

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
               I++    R+                  +IW        G  FN        E + M
Sbjct: 119 DRHDIVSGFPVRQ-----------------IIIWRRK----GGINFNKGYFLPTYEVIYM 157

Query: 181 RSDWLIPICSGSERL-----RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
                  +C G+ +        ++ +  HP   P AL+ RI+ S+     +ILDPF GSG
Sbjct: 158 ICKPKFSLCPGANKYGDVWEFTQEMKNPHPAPFPVALIERIISSTNAK--VILDPFMGSG 215

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           T+   AKKL R FIGIE+  +YI +A +R+   
Sbjct: 216 TTAIAAKKLYREFIGIEISAEYIALAQERLNET 248


>gi|288931950|ref|YP_003436010.1| DNA methylase N-4/N-6 domain protein [Ferroglobus placidus DSM
           10642]
 gi|288894198|gb|ADC65735.1| DNA methylase N-4/N-6 domain protein [Ferroglobus placidus DSM
           10642]
          Length = 303

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 63/279 (22%), Positives = 103/279 (36%), Gaps = 42/279 (15%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            E  D II G++  VL+ LP   + L+   PPYN+                    +D+  
Sbjct: 49  PELLDNIILGDAREVLKNLPKNCIHLMVTSPPYNVGK-----------------EYDEDL 91

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN-------IFRIGTMLQNLNFWILNDI 129
           +   Y  F    +    RVL   G +    +             +    + + F    +I
Sbjct: 92  TLGEYLDFIEEVMKEVYRVLVWGGRVCFNVANLGRKPYIPLHAYLIERFEKIGFLFRGEI 151

Query: 130 VWRKSNPMP----------NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
           +W K + +           +      ++ HE +I  S     +      D +        
Sbjct: 152 IWDKGDAVSGASTAWGTWQSAVNPVLRDQHEYIIVLSKGSFKREKGNKEDTISREEFLEF 211

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
            +S W  P  S             HP   PE L  R +   T  GD++LDPF GSGT+  
Sbjct: 212 TKSVWKFPPESAK--------RVGHPAPFPEELPYRCIQLFTFKGDVVLDPFVGSGTTCV 263

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278
            A K  R FIGI++++ Y++IA +RI  ++    +    
Sbjct: 264 AALKTGRHFIGIDIEEKYVEIAKRRIKEIKATKKLTEYF 302


>gi|15644681|ref|NP_206851.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter pylori
           26695]
 gi|2313123|gb|AAD07116.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter pylori
           26695]
          Length = 232

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 76/247 (30%), Positives = 113/247 (45%), Gaps = 23/247 (9%)

Query: 22  KIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDKFSSF 78
           +I   ++  +++    +   VD I  DPPYN+ +         +    +    WDK    
Sbjct: 3   QIYHADAFEIIKDFYQQNLKVDAIITDPPYNISVKNNFPTLKSAKRQGIDFGEWDK---- 58

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
              +     W+     ++ PNG + +  SY  I  I   L+   F + + I W K+NPMP
Sbjct: 59  ---NFKLLEWIARYAPLVNPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMP 115

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
               RR+    E  +WA        + FN    K  NE          P+ SG E+ +  
Sbjct: 116 RNIHRRYVQDTEFALWAVKKKA--KWVFN----KPKNEKYLRPLILKSPVVSGLEKTK-- 167

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQK  AL+ +I+   T P DI+LDPF GSGT+G   K L R+FIGIE +++Y 
Sbjct: 168 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKNLERNFIGIESEKEYF 222

Query: 259 DIATKRI 265
             A KR+
Sbjct: 223 QTAKKRL 229


>gi|315586054|gb|ADU40435.1| site-specific DNA-methyltransferase (adenine-specific)
           [Helicobacter pylori 35A]
          Length = 232

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 78/247 (31%), Positives = 114/247 (46%), Gaps = 23/247 (9%)

Query: 22  KIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDKFSSF 78
           +I   NS  +++        VD I  DPPYN+ +         +    +    WDK    
Sbjct: 3   QIHHANSFEIIKDFYQQDLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDK---- 58

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
              +     W+     ++ PNG + +  SY  I  I   L+   F + + I W K+NPMP
Sbjct: 59  ---NFRLLEWIKRYAPLVNPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMP 115

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
               R +    E  +WA        + FN    K  NE          P+ SG E+++  
Sbjct: 116 RNINRHYVQDTEFALWAVKKKA--KWVFN----KPENEKYLRPLILKSPVVSGLEKVK-- 167

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQK  AL+ +I+   T P DI+LDPF GSGT+G   K+L R+FIGIE +++Y 
Sbjct: 168 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLERNFIGIESEKEYF 222

Query: 259 DIATKRI 265
            IA KR+
Sbjct: 223 QIAKKRL 229


>gi|159900577|ref|YP_001546824.1| site-specific DNA-methyltransferase [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159893616|gb|ABX06696.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 281

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 65/273 (23%), Positives = 117/273 (42%), Gaps = 24/273 (8%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL--------------NGQLYRPDHSLV 65
            +K+  G++++VL  LPA S DLI+ DPP+N                   ++    H   
Sbjct: 1   MNKLYFGDNLAVLATLPAASYDLIYIDPPFNTGKIQSRTQLRTVRSEQGDRVGFGGHRYS 60

Query: 66  DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NF 123
                      SF+ + AF    LL   R+LKP G+ +    Y  +     ++  +    
Sbjct: 61  SIKIGERAYGDSFDDFLAFIEPRLLEAYRLLKPQGSFFFHIDYREVHYCKVLIDQIFGRD 120

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN------YDALKAANED 177
             +N+I+W           +++   H+T++W +  P+   + ++      Y A      +
Sbjct: 121 SFINEIIWAYDYGA--RSRKKWSTKHDTILWYAKDPENYTFNYDQIDRIPYMAPGLVGPE 178

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
              R      +   +    N   +  +PTQKP A+L+RI+   + P D +LD F GSG+ 
Sbjct: 179 KAARGKTPTDVWWNTIVSPNGKEKTGYPTQKPLAILNRIVRVHSNPNDQLLDFFAGSGSF 238

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
           G  A +  R+F  I+     I++  +R+A  +P
Sbjct: 239 GEAAARNGRNFTLIDQNPQAIEVMRQRLAFAEP 271


>gi|188526859|ref|YP_001909546.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter pylori
           Shi470]
 gi|188143099|gb|ACD47516.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter pylori
           Shi470]
          Length = 232

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 78/247 (31%), Positives = 114/247 (46%), Gaps = 23/247 (9%)

Query: 22  KIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDKFSSF 78
           +I   N+  +++        VD I  DPPYN+ +         +    +    WDK    
Sbjct: 3   QIHHANAFEIIKDFYQQDLKVDAIITDPPYNISVKNNFSTLKSATRQGIDFGEWDK---- 58

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
              +     W+     ++ PNG + +  SY  I  I   L+   F + + I W K+NPMP
Sbjct: 59  ---NFRLLEWIKRYAPLVNPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMP 115

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
               RR+    E  +WA        + FN    K  NE          P+  G ER++  
Sbjct: 116 RNINRRYVQDTEFALWAVKKKA--KWVFN----KPKNEKYLRPLILKSPVVGGLERVK-- 167

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQK  AL+ +I+   T P DI+LDPF GSGT+G   K L+R+FIGIE +++Y 
Sbjct: 168 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKHLKRNFIGIESEKEYF 222

Query: 259 DIATKRI 265
            IA KR+
Sbjct: 223 QIAKKRL 229


>gi|156741069|ref|YP_001431198.1| adenine-specific DNA-methyltransferase [Roseiflexus castenholzii
           DSM 13941]
 gi|156232397|gb|ABU57180.1| Site-specific DNA-methyltransferase (adenine-specific) [Roseiflexus
           castenholzii DSM 13941]
          Length = 305

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 117/292 (40%), Gaps = 34/292 (11%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL------- 53
           M +     I+ N          I   +++ +L  LP+ SVDLI+ DPP+N          
Sbjct: 1   MREAQHFMIDHNTTGA------IYLADNLDILRALPSGSVDLIYIDPPFNTGKHQQRVQL 54

Query: 54  ------NGQLYRPDHSLVDAVTDSWDKFSS-FEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
                 +G           ++     +FS  F+ Y AF    L+   RVL P+G+ +   
Sbjct: 55  KTERSDDGDRVGFQGQRYKSIILGSRRFSDVFDDYLAFLEPRLVEAHRVLAPSGSFYFHV 114

Query: 107 SYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
            Y  +     +L  +      LN+I+W            R+   H+ ++    +     Y
Sbjct: 115 DYREVHYCKVLLDAIFGRESFLNEIIWAYDYGGRP--KNRWPPKHDNILLYVKNLS--RY 170

Query: 165 TFN--------YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
            FN        Y A      +   R          +    N   +  +PTQKP  +L RI
Sbjct: 171 VFNVDEIERIPYMAPGLVGPEKAARGKLPTDCWWHTIVPTNGAEKTGYPTQKPLGILRRI 230

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           + +S+KPG ++LD F GSGT+G  A +L R FI ++   + + +  +R   V
Sbjct: 231 VQASSKPGSLVLDFFAGSGTTGIAALELGRRFILVDNNPEALAVMARRFDGV 282


>gi|261837514|gb|ACX97280.1| adenine-methyltransferase [Helicobacter pylori 51]
          Length = 232

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 78/247 (31%), Positives = 115/247 (46%), Gaps = 23/247 (9%)

Query: 22  KIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDKFSSF 78
           +I   N+  +++    +   VD I  DPPYN+ +         +    +    WDK    
Sbjct: 3   QIHHANAFEIIKDFYQQNLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDK---- 58

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
              +     W+     ++ PNG + +  SY  I  I   L+   F I + I W K+NPMP
Sbjct: 59  ---NFRLLEWIKRYAPLVNPNGCMVIFCSYRFISYIADFLEENGFVIKDFIQWVKTNPMP 115

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
               RR+    E  +WA        + FN    K  NE          P+ SG E+++  
Sbjct: 116 RNINRRYVQDTEFALWAVKKKA--KWVFN----KPKNEKYLRPLILKSPVVSGLEKVK-- 167

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQK   L+ +I+   T P DI+LDPF GSGT+G   K+L R+FIGIE +++Y 
Sbjct: 168 -----HPTQKSLDLMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLERNFIGIESEKEYF 222

Query: 259 DIATKRI 265
            IA KR+
Sbjct: 223 QIAKKRL 229


>gi|207092046|ref|ZP_03239833.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 232

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 76/247 (30%), Positives = 114/247 (46%), Gaps = 23/247 (9%)

Query: 22  KIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDKFSSF 78
           +I   ++  +++    +   VD I  DPPYN+ +         +    +    WDK    
Sbjct: 3   QIHHADAFEIIKDFYQQNLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDK---- 58

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
              +     W+     ++ PNG + +  SY  I  I   L+   F + + I W K+NPMP
Sbjct: 59  ---NFKLLEWIKHYAPLVNPNGCMIIFCSYRFISYIADFLEENGFVVKDFIQWVKTNPMP 115

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
               RR+    E  +WA        + FN    K  NE          P+ SG E+++  
Sbjct: 116 RNIHRRYVQDTEFALWAVKKKA--KWVFN----KPKNEKYLRPLILKSPVVSGLEKVK-- 167

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQK  AL+ +I+   T P DI+LDPF GSGT+G   K L R+FIGIE +++Y 
Sbjct: 168 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKNLERNFIGIESEKEYF 222

Query: 259 DIATKRI 265
             A KR+
Sbjct: 223 QTAKKRL 229


>gi|186473194|ref|YP_001860536.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           phymatum STM815]
 gi|184195526|gb|ACC73490.1| DNA methylase N-4/N-6 domain protein [Burkholderia phymatum STM815]
          Length = 305

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 73/257 (28%), Positives = 120/257 (46%), Gaps = 27/257 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +++  + ++    LP  S+DLI ADPPY L   G+ Y  D               S E +
Sbjct: 41  QLLNRDFLTDAANLPDGSIDLIVADPPYGL---GKDYGNDS-----------DMRSGEDF 86

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+TRAWL      LKP+G+L++  ++     I   L+     ++N+I+W +  P     
Sbjct: 87  LAWTRAWLDLAIPKLKPSGSLYIFCTWQYAPEIFVFLKR-RLLMVNEIIWDRRVPSMGGT 145

Query: 142 GRRFQNAHETLIWASPSPKAK------GYTFNYDALKAANEDVQMRSDWL------IPIC 189
            RRF + H+ + + + S             ++    KA +  +   S WL        + 
Sbjct: 146 TRRFTSVHDNIGYFAVSKDYYFDLDPVRIPYDAVTKKARSRKLFEGSKWLELGYNPKDVW 205

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           S S   R       HPTQKP  ++ R++++S  PG  +LDPF GSGT+     +  R F+
Sbjct: 206 SVSRLHRQHAERVDHPTQKPLEIVERMVLASCPPGGRVLDPFMGSGTTAVACARQTREFV 265

Query: 250 GIEMKQDYIDIATKRIA 266
           G E+ + Y  IA +R++
Sbjct: 266 GYEINESYCAIARERVS 282


>gi|255066897|ref|ZP_05318752.1| DNA (cytosine-5-)-methyltransferase [Neisseria sicca ATCC 29256]
 gi|255048972|gb|EET44436.1| DNA (cytosine-5-)-methyltransferase [Neisseria sicca ATCC 29256]
          Length = 285

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 80/275 (29%), Positives = 127/275 (46%), Gaps = 38/275 (13%)

Query: 7   LAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           + I EN  +      KI   + +  L  +   SVDLIFADPPYN+               
Sbjct: 1   MKIFENSMT------KIYLADCLDALNDIQDNSVDLIFADPPYNIG----------KKFS 44

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
              DSW    + + Y  +   WL  C   LK NG+L+V+ S  ++  I   L+     IL
Sbjct: 45  QFKDSW---KTEKEYIEWCYKWLSLCLNKLKDNGSLYVMASTQSMPYIDIWLRE-RMTIL 100

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK------AANEDVQM 180
           + I+W   +     +     + +E +++A  +   K YTFN   ++      A  + +  
Sbjct: 101 SRIIWHYDSSGVQAKKYYG-SLYEPILFAVKNN--KSYTFNSSDIEIEAKTGAKRKLIDY 157

Query: 181 RSDWLIPI---------CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
           R +   P                    +  + HP+QKPEALL RI+ +ST  GD++LDPF
Sbjct: 158 RKEIPTPYKTTKVPGNTWYFPRVRYRMEEYENHPSQKPEALLERIIRASTNEGDLVLDPF 217

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
            G+ ++ AVA+KL R  I IE +++Y+ I  +R+ 
Sbjct: 218 GGTFSTSAVAQKLNRKSISIEFQEEYLKIGLRRLG 252


>gi|163845918|ref|YP_001633962.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222523640|ref|YP_002568110.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus sp.
           Y-400-fl]
 gi|163667207|gb|ABY33573.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222447519|gb|ACM51785.1| DNA methylase N-4/N-6 domain protein [Chloroflexus sp. Y-400-fl]
          Length = 400

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 79/309 (25%), Positives = 134/309 (43%), Gaps = 39/309 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++ G+   VL+ +   S+DL++ DPP+  Q    L   D +   +  D+W+   S E Y
Sbjct: 2   TVLCGDCRIVLQSINDSSIDLVYMDPPFFTQKTHALVNRDGNASYSFEDTWE---SIETY 58

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPN 139
            AF R  L+ C+RVLK  G+++V         +  +L  +       ++I+W       +
Sbjct: 59  LAFMREVLIQCKRVLKDTGSIFVHCDRSASHHLRVLLDQIFGPEHFQSEIIWTYRRWSNS 118

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ-------------MRSDWLI 186
            +G     AH+T+ + S +   K      D     N D                R D   
Sbjct: 119 KKG--LLPAHQTIYFYSKTENFKFNVLFTDYSPTTNIDQILQARARNEKGKSVYRRDQHG 176

Query: 187 PICSGSER--------------LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
            I +G E+                       +PTQKP  LL RI+  +T  GD +LDPF 
Sbjct: 177 NIVAGKEKKGVPLSDVWYIPFLNPKAKERVGYPTQKPVLLLERIIKIATDSGDSVLDPFC 236

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL 292
           GSGT+   AK L R++IGI++ ++ + ++ +R+   QP+ +    ++ G+          
Sbjct: 237 GSGTTLVAAKLLGRTYIGIDISREAVSLSEERLR--QPIKSESQLLVVGEEGFR---MKS 291

Query: 293 LVERGLIQP 301
             ER L++ 
Sbjct: 292 NYERNLLKA 300


>gi|210134245|ref|YP_002300684.1| adenine specific DNA methyltransferase [Helicobacter pylori P12]
 gi|210132213|gb|ACJ07204.1| adenine specific DNA methyltransferase [Helicobacter pylori P12]
          Length = 230

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 77/248 (31%), Positives = 116/248 (46%), Gaps = 23/248 (9%)

Query: 22  KIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDKFSSF 78
           +I   ++  +++    +   VD I  DPPYN+ +         +    +    WDK    
Sbjct: 3   QIHHADAFEIIKDFYQQNLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDK---- 58

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
              +     W+     ++ PNG + +  SY  I  I   L+   F + + I W K+NPMP
Sbjct: 59  ---NFKLLEWIKRYAPLVNPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMP 115

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
               RR+    E  +WA        + FN    K  NE          P+ SG ER++  
Sbjct: 116 RNIHRRYVQDTEFALWAVKKKA--KWVFN----KPKNEKYLRPLILKSPVVSGLERVK-- 167

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQK  AL+ +I+   T P DI+LDPF GSGT+G   K L+R+FIGIE +++Y 
Sbjct: 168 -----HPTQKSLALMEKIVSIHTNPNDIVLDPFMGSGTTGLACKNLQRNFIGIESEKEYF 222

Query: 259 DIATKRIA 266
             A KR++
Sbjct: 223 QTAQKRLS 230


>gi|320108417|ref|YP_004184007.1| DNA methylase N-4/N-6 domain-containing protein [Terriglobus
           saanensis SP1PR4]
 gi|319926938|gb|ADV84013.1| DNA methylase N-4/N-6 domain protein [Terriglobus saanensis SP1PR4]
          Length = 278

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 71/271 (26%), Positives = 117/271 (43%), Gaps = 29/271 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR--------PDHSLVDAVTDSWD 73
           +++   ++  L+ LP++SVDLI+ DPP+N     +  R         D +         +
Sbjct: 10  QVVHAENLGFLQTLPSESVDLIYIDPPFNTGRVQKRTRMKTVRDEAGDRTGFGGARYRTE 69

Query: 74  KFS-------SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFW 124
           K +       +F+ +  F R  L    R+LKP+G L+             ML  +     
Sbjct: 70  KLAEAAAYEDTFDDFLGFIRPRLEEAYRILKPHGALFFHIDPRESHYCKVMLDQIFTRPC 129

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN--------YDALKAANE 176
             N+I+W           +R+   H+T++W +  P    YTFN        Y A      
Sbjct: 130 FQNEIIWAYDYGA--RSTKRWPGKHDTILWYTKHPT--KYTFNLAACDRIEYMAPTLVGA 185

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
           +   R      +   +        +  +PTQKP  +L+RI+   TKP D +LD F GSGT
Sbjct: 186 EKAARGKTPTDVWWHTIVSPTGKEKTGYPTQKPLGVLNRIVKVHTKPKDTVLDFFAGSGT 245

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           +G  A K +R FI ++  ++ + I  KR+A 
Sbjct: 246 TGEAAAKNKRRFILVDQSEEAVGIMQKRLAK 276


>gi|15611114|ref|NP_222765.1| putative type II DNA modification enzyme (methyltransferase)
           [Helicobacter pylori J99]
 gi|4154542|gb|AAD05620.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
           [Helicobacter pylori J99]
          Length = 230

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 77/248 (31%), Positives = 116/248 (46%), Gaps = 23/248 (9%)

Query: 22  KIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDKFSSF 78
           +I   N+  +++    +   VD I  DPPYN+ +         +    +    WDK    
Sbjct: 3   QIHHANAFEIIKDFHQQNLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDK---- 58

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
              +     W+     ++ PNG + +  SY  I  I   L+   F + + I W K+NPMP
Sbjct: 59  ---NFKLLEWIARYASLINPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMP 115

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
               RR+    E  +WA        + FN    K  NE          P+ SG ER++  
Sbjct: 116 RNIHRRYVQDTEFALWAVKKKA--KWVFN----KPKNEKYLRPLILKSPVVSGIERVK-- 167

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQK   L+ +I+ + T P D +LDPF GSGT+G   K L+R+FIGIE +++Y 
Sbjct: 168 -----HPTQKSLTLMEKIISTHTNPNDTVLDPFMGSGTTGLACKNLKRNFIGIESEKEYF 222

Query: 259 DIATKRIA 266
            IA KR++
Sbjct: 223 QIAQKRLS 230


>gi|257125924|ref|YP_003164038.1| methyltransferase [Leptotrichia buccalis C-1013-b]
 gi|257049863|gb|ACV39047.1| DNA methylase N-4/N-6 domain protein [Leptotrichia buccalis
           C-1013-b]
          Length = 297

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 74/257 (28%), Positives = 123/257 (47%), Gaps = 31/257 (12%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           + G+ + +L  +   SV+LIFADPPY +  N               +  D F + E Y  
Sbjct: 23  VLGDCLDILRSIEDNSVNLIFADPPYGIGKN-------------FGNDSDFFKNKEEYFD 69

Query: 84  FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
           + + W+  C R+LK +GT++ + S   +  +   + + N++++N I+W   +     +  
Sbjct: 70  WAKKWIDECMRILKEDGTMYFMTSTQFMPFLDMYVDD-NYYVINRIIWTYDSSGVQAKT- 127

Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDA---------------LKAANEDVQMRSDWLIPI 188
           +F + +E ++  + S K+K YTFNY                  +               +
Sbjct: 128 KFGSLYEPILMVTHSKKSK-YTFNYQDILIETNTGAKRKLIDYRKTPPQPYNTKKVPGNV 186

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
              S      +  + HPTQKPE LL RI+++S+   DI+LDPF GS T+ AVA+KL R  
Sbjct: 187 WDFSRVRYRMEEYENHPTQKPEELLKRIILASSNENDIVLDPFSGSFTTSAVAQKLNRKT 246

Query: 249 IGIEMKQDYIDIATKRI 265
           IGIE   +Y  I  +R+
Sbjct: 247 IGIETNLEYFKIGLRRL 263


>gi|126658932|ref|ZP_01730074.1| DNA methylase N-4/N-6 [Cyanothece sp. CCY0110]
 gi|126619730|gb|EAZ90457.1| DNA methylase N-4/N-6 [Cyanothece sp. CCY0110]
          Length = 367

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 75/270 (27%), Positives = 126/270 (46%), Gaps = 45/270 (16%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I  G+ +++L +LP + VDL+ + PPYNL    +  +                 + + 
Sbjct: 11  NQIFLGDCLALLSQLPNECVDLVISSPPYNLGKEYEAKK-----------------ALDN 53

Query: 81  YDAFTRAWLLACRRVLKPNGTL-WVIGSYHNI-------FRIGTMLQNLNFWILNDIVWR 132
           Y A     L  C R+LK  G++ W +G+Y N         R   +L++      N I+W 
Sbjct: 54  YLAEQTLVLQECSRILKKTGSIFWQVGAYSNQGSLIPLDIRFFPILESCGLIPRNRIIWV 113

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED--------------- 177
           + + +      +F   HET++W + SP    YTFN DA++   +                
Sbjct: 114 RQHGL--HAQNKFSCRHETILWFTKSP---KYTFNLDAIRIPQKYQNKKYYKGNKKGKLS 168

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
              +      I        N + + +HP Q PE L++RI++++T   DII DP+ GSGT 
Sbjct: 169 CNPKGKNPGDIWLFRNVKHNHEEQTIHPCQFPEDLVARIILATTNSNDIIFDPYLGSGTV 228

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
             V+K  +R FIG E+++ Y DIA +R+  
Sbjct: 229 AVVSKNYKRYFIGSEIEEKYYDIALRRLEE 258


>gi|119511116|ref|ZP_01630234.1| type IIS restriction enzyme M1 protein (mod) [Nodularia spumigena
           CCY9414]
 gi|119464211|gb|EAW45130.1| type IIS restriction enzyme M1 protein (mod) [Nodularia spumigena
           CCY9414]
          Length = 293

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 81/294 (27%), Positives = 134/294 (45%), Gaps = 44/294 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+ +GNSI  L  L ++S+DL+FADPPYN++                   WD F + E Y
Sbjct: 18  KLYQGNSIDWLTSLESESIDLVFADPPYNIKKA----------------EWDNFENQEKY 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             ++  W+    R+LK  G+L+ I  +  I        +  F     ++W   N      
Sbjct: 62  IEWSIQWISQASRILKSTGSLY-ICGFSEILADLKHPASKYFKSCRWLIWHYKNKAN--L 118

Query: 142 GRRFQNAHETLIWASPSPKAK-----------GYTFNYDALK-----AANEDVQMRSDWL 185
           G  +  +HE++I    S   K            +T  Y +       A  +  + + +  
Sbjct: 119 GNDWGRSHESIIHFRKSDSVKLNIDDVRIPYGAHTLKYPSHPQAETSAYGKGTKKKHNNW 178

Query: 186 IPICSGSER---------LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
            P   G++              D +  HPTQKPE L+ + +++S++ GD+I+DPF GSGT
Sbjct: 179 TPNPKGAKPKDVIEIPTTCNGMDEKTPHPTQKPEELIRKFVLASSQEGDLIIDPFSGSGT 238

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAF 290
           +  VA++L R ++G ++  +Y   ATKRI +V+ +   E      K  E RV+ 
Sbjct: 239 TVVVAEQLNRYWMGCDLNIEYNYWATKRIENVRRMTKEEWLAFDRKNAERRVSI 292


>gi|317013473|gb|ADU80909.1| putative type II DNA modification enzyme (methyltransferase)
           [Helicobacter pylori Gambia94/24]
          Length = 230

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 78/248 (31%), Positives = 116/248 (46%), Gaps = 23/248 (9%)

Query: 22  KIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDKFSSF 78
           +I   N+  +++    +   VD I  DPPYN+ +         +    +    WDK    
Sbjct: 3   QIHHANAFEIIKDFHQQNLKVDAIITDPPYNISVQNNFSTLKSAKRQGIDFGEWDK---- 58

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
              +     W+     ++ PNG + +  SY  I  I   L+   F + + I W K+NPMP
Sbjct: 59  ---NFKLLEWITRYAPLINPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMP 115

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
               RR+    E  +WA        + FN    K  NE          P+ SG ER++  
Sbjct: 116 RNIHRRYVQDTEFALWAVKKKA--KWVFN----KPENEKYLRPLILKSPVVSGIERVK-- 167

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQK   L+ +I+   T P DI+LDPF GSGT+G   K L+R+FIGIE +++Y 
Sbjct: 168 -----HPTQKSLVLMEKIISIHTNPNDIVLDPFMGSGTTGLACKNLKRNFIGIESEKEYF 222

Query: 259 DIATKRIA 266
            IA KR++
Sbjct: 223 QIAQKRLS 230


>gi|308062919|gb|ADO04806.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter pylori
           Sat464]
          Length = 232

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 78/247 (31%), Positives = 115/247 (46%), Gaps = 23/247 (9%)

Query: 22  KIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDKFSSF 78
           +I   N+  +++    +   VD I  DPPYN+ +         +    +    WDK    
Sbjct: 3   QIHHANAFEIIKDFYQQNLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDK---- 58

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
              +     W+     ++ PNG + +  SY  I  I   L+   F + + I W K+NPMP
Sbjct: 59  ---NFRLLEWIKRYAPLVNPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMP 115

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
               RR+    E  +WA        + FN    K  NE          P+  G ER++  
Sbjct: 116 RNINRRYVQDTEFALWAVKKKA--KWVFN----KPKNEKYLRPLILKSPVVGGLERVK-- 167

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQK  AL+ +I+   T P DI+LDPF GSGT+G   K L+R+FIGIE +++Y 
Sbjct: 168 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKHLKRNFIGIESEKEYF 222

Query: 259 DIATKRI 265
            IA KR+
Sbjct: 223 QIAKKRL 229


>gi|153831218|ref|ZP_01983885.1| DNA methylase [Vibrio cholerae 623-39]
 gi|148873298|gb|EDL71433.1| DNA methylase [Vibrio cholerae 623-39]
          Length = 314

 Score =  175 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 77/290 (26%), Positives = 123/290 (42%), Gaps = 43/290 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + +G+SI  L+ L ++SVDLIF+DPPYN+                    WDKF + E Y
Sbjct: 40  TLYEGDSIEWLKTLDSESVDLIFSDPPYNINKA----------------DWDKFETQEKY 83

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             ++  W+    RVLK  GTL+V G    +  I        F     ++W   N      
Sbjct: 84  IDWSMQWISEAYRVLKKEGTLYVCGFSEILADIKH-PSMKYFKSCRWLIWHYKNKAN--L 140

Query: 142 GRRFQNAHETLIWASPSP---------------KAKGYTFNYDALKAANEDVQMRSDWLI 186
           G  +  +HE+++    S                    Y  +  A  +   +   R D   
Sbjct: 141 GNDWGRSHESILHLRKSNKKIFNVDDVRVPYGGHTLKYPSHPQAQTSQYSNGSKRKDVWT 200

Query: 187 PICSGSER--------LRNKDGEK-LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           P   G++           N  GEK  HPTQKPE L+ + +++S+  GD+++DPF GSGT+
Sbjct: 201 PHPRGAKPRDVIEVPTTCNGMGEKTKHPTQKPEELVRKFILASSNEGDLVIDPFSGSGTT 260

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
             VA++L R +   ++   Y + A  R+ ++      E         + R
Sbjct: 261 AVVAEQLGRRWAACDINPQYNNWAMDRLDNIVHRTKQEWIDFDRDNDKRR 310


>gi|269838385|ref|YP_003320613.1| DNA methylase N-4/N-6 domain-containing protein [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787648|gb|ACZ39791.1| DNA methylase N-4/N-6 domain protein [Sphaerobacter thermophilus
           DSM 20745]
          Length = 307

 Score =  175 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 77/273 (28%), Positives = 122/273 (44%), Gaps = 28/273 (10%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR------PDHSLVDAVTDS 71
           E+ D I+  ++++VL  LP   V LI+ DPP+N      L R      PD   V     +
Sbjct: 7   EYVDTIVYSDNLAVLRTLPDGCVPLIYIDPPFNTGKTRSLTRLRTTRDPDGDRVGFQGQT 66

Query: 72  WD-------KFSS-FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-- 121
           +        +F+  F+ Y AF    L+  RRVL PNGTL+V      +  +  +L  +  
Sbjct: 67  YRTLRLGTTRFADVFDDYLAFLEPRLVEARRVLAPNGTLYVHLDPREVHYVKVLLDGIFG 126

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN--------YDALKA 173
               LN+I+W           RR+   H+ ++    SP  + Y FN        Y A   
Sbjct: 127 RECFLNEIIWAYDFGG--RSTRRWPAKHDNILVYVASP--RDYVFNVDAIDRIPYMAPGL 182

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
              +   R          +           +PTQKP  +L RI+ +S+ PGD++LD F G
Sbjct: 183 VGPEKAARGKLPTDTWWATIVPTKARERTGYPTQKPLTILRRIIAASSNPGDLVLDFFAG 242

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           SGT+G  A++L R F+ ++   + + +  +R A
Sbjct: 243 SGTTGVAARELGRRFLLVDNNPEALQVMARRFA 275


>gi|168703324|ref|ZP_02735601.1| adenine-specific methyltransferase [Gemmata obscuriglobus UQM 2246]
          Length = 290

 Score =  175 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 75/278 (26%), Positives = 123/278 (44%), Gaps = 48/278 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + + +G+ + VL  LPA   DL+FADPP+N+     +Y    +  D              
Sbjct: 7   NDVAEGDCVQVLNTLPAGCADLVFADPPFNIGYQYDVYDDKRAKAD-------------- 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +T  WL A  RVL P+G+L++      +      L  L   + N +VW  +  +   
Sbjct: 53  YLTWTEKWLAAAVRVLAPHGSLFLAIGDEFVAEHKVRLDALGLTMRNWVVWHYTFGVNCS 112

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN------------------------- 175
             ++F  +H  +++    PK   +  +   + +A                          
Sbjct: 113 --KKFNRSHAHILYYVRDPKNHQFFPDEVRVPSARMTTYADKRANPVGKLPDDTWVLRPQ 170

Query: 176 ----EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
                       W +P   G+   RN+ G   H  Q PEA+L R++  ++KPGD++LDPF
Sbjct: 171 ESDAHFAPDSDTWHVPRICGTFHERNEAG---HKCQMPEAVLDRVIRVASKPGDLVLDPF 227

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            GSGT+ AVAKKL R + G+E+ + Y D   KR+  ++
Sbjct: 228 AGSGTTLAVAKKLGRRYFGVELSEQYADGVRKRLQMIE 265


>gi|20663549|pdb|1G60|A Chain A, Crystal Structure Of Methyltransferase Mboiia (Moraxella
           Bovis)
 gi|20663550|pdb|1G60|B Chain B, Crystal Structure Of Methyltransferase Mboiia (Moraxella
           Bovis)
          Length = 260

 Score =  175 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 78/266 (29%), Positives = 114/266 (42%), Gaps = 45/266 (16%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI + N    L+++  KSV L   DPPYNL                    WD F S   
Sbjct: 5   NKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKA----------------DWDSFDSHNE 48

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           + AFT  W+      L  +G+L++  +  N   I   L +      N I W K + M   
Sbjct: 49  FLAFTYRWIDKVLDKLDKDGSLYIFNTPFNCAFICQYLVSKGMIFQNWITWDKRDGMG-S 107

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ--------------------- 179
             RRF    ET+++ S    +K +TFNYD ++   E                        
Sbjct: 108 AKRRFSTGQETILFFSK---SKNHTFNYDEVRVPYESTDRIKHASEKGILKNGKRWFPNP 164

Query: 180 ----MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
                   W        E++  K  +  H T KP  L+ RI+ +S+ P D++LD F GSG
Sbjct: 165 NGRLCGEVWHFSSQRHKEKVNGKTVKLTHITPKPRDLIERIIRASSNPNDLVLDCFMGSG 224

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIA 261
           T+  VAKKL R+FIG +M  +Y++ A
Sbjct: 225 TTAIVAKKLGRNFIGCDMNAEYVNQA 250


>gi|307726598|ref|YP_003909811.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia sp.
           CCGE1003]
 gi|307587123|gb|ADN60520.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. CCGE1003]
          Length = 303

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 71/279 (25%), Positives = 126/279 (45%), Gaps = 27/279 (9%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +++  + ++ +  +P  S+DLI  DPPY L   G+ Y  D               S + +
Sbjct: 39  QLLNRDFLTDVANIPDGSIDLILCDPPYGL---GKDYGNDS-----------DMRSGDDF 84

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+TR WL      LKP+G+L++  ++     I + L+     ++N+I+W +  P     
Sbjct: 85  LAWTRGWLELAVPKLKPSGSLYIFCTWQYAPEIFSFLK-TKLVMINEIIWDRRVPSMGGT 143

Query: 142 GRRFQNAHETLIWASPSPKAK------GYTFNYDALKAANEDVQMRSDWL------IPIC 189
            RRF + H+ + + + S             ++    KA +  +   S WL        + 
Sbjct: 144 TRRFTSVHDNIGFFAVSKDYYFDLDPVRIPYDAATKKARSRKLFEGSKWLELGYNPKDVW 203

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           S S   R       HPTQKP  ++ R++++S   G  +LDPF GSGT+     + +R F+
Sbjct: 204 SVSRLHRQHAERVDHPTQKPLEIVERMVLASCPKGGRVLDPFMGSGTTAVACARQQREFV 263

Query: 250 GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
           G E+ + Y  IA +R+++          V    + +P V
Sbjct: 264 GYEINESYCAIARERVSAAAAAPAGRAPVKARAQRQPEV 302


>gi|281412388|ref|YP_003346467.1| DNA methylase N-4/N-6 domain protein [Thermotoga naphthophila
           RKU-10]
 gi|281373491|gb|ADA67053.1| DNA methylase N-4/N-6 domain protein [Thermotoga naphthophila
           RKU-10]
          Length = 308

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 61/277 (22%), Positives = 107/277 (38%), Gaps = 46/277 (16%)

Query: 13  QNSIFE-WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
           +N + E   DK+I+G++  VL+K+P +S+ L+   PPYN+                    
Sbjct: 46  ENPLPENLLDKVIEGDAREVLKKIPDRSIHLMVTSPPYNVGK-----------------E 88

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN-------IFRIGTMLQNLNFW 124
           +D+  + + Y  F    +    R+L   G +    +             +  + + + F 
Sbjct: 89  YDEDMTLDEYLEFIEEVMKEVYRILVWGGRVCFNVANLGRKPYIPLHAYLIHLFEKIGFL 148

Query: 125 ILNDIVWRKSNPM----------PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
           I  +I+W K   +           +      ++ HE +I  S     +    + +     
Sbjct: 149 IRGEIIWDKGEAVSGSSTAWGSWMSPVNPVLRDQHEYIIVMSKGDLKRRKPSDREVESTI 208

Query: 175 NEDVQ---MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
             +      RS W  P  S             HP   PE L  R +   T  GD++LDPF
Sbjct: 209 TREEFLEFTRSVWKFPPESAK--------RVGHPAPFPEELPYRCIQLYTFKGDVVLDPF 260

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            G GT+     K  R F+GIE+  +Y+  A +R+  +
Sbjct: 261 AGVGTTCVATVKTGRHFVGIEINPEYVKKAEERVKDI 297


>gi|307636736|gb|ADN79186.1| Adenine-specific methyltransferase [Helicobacter pylori 908]
 gi|325995322|gb|ADZ50727.1| Adenine-specific methyltransferase [Helicobacter pylori 2018]
 gi|325996920|gb|ADZ49128.1| Adenine-specific methyltransferase [Helicobacter pylori 2017]
          Length = 232

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 76/247 (30%), Positives = 114/247 (46%), Gaps = 23/247 (9%)

Query: 22  KIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDKFSSF 78
           +I   N+  +++    +   VD I  DPPYN+ +         +    +    WDK    
Sbjct: 3   QIYHANAFEIIKDFHQQNLKVDAIITDPPYNISVQNNFSTLKSAKRQGIDFGEWDK---- 58

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
              +     W+     ++ PNG + +  SY  I  I   L+   F + + I W K+NPMP
Sbjct: 59  ---NFKLLEWIARYAPLINPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMP 115

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
               RR+    E  +WA        + FN    K  NE          P+ SG ER++  
Sbjct: 116 RNIHRRYVQDTEFALWAVKKKA--KWVFN----KPENEKYLRPLILKSPVVSGIERVK-- 167

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQK  AL+ +I+   T P +++LDPF GSGT+G   K L+R FIGIE +++Y 
Sbjct: 168 -----HPTQKSLALMEKIVSIHTNPNNVVLDPFMGSGTTGLACKNLKRKFIGIESEKEYF 222

Query: 259 DIATKRI 265
             A KR+
Sbjct: 223 QTAQKRL 229


>gi|161521164|ref|YP_001584591.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           multivorans ATCC 17616]
 gi|189352659|ref|YP_001948286.1| putative adenine-specific DNA-methyltransferase [Burkholderia
           multivorans ATCC 17616]
 gi|221212473|ref|ZP_03585450.1| DNA modification methylase RsrI [Burkholderia multivorans CGD1]
 gi|28971665|dbj|BAC65265.1| probable DNA-methyltransferasee [Burkholderia multivorans]
 gi|160345214|gb|ABX18299.1| DNA methylase N-4/N-6 domain protein [Burkholderia multivorans ATCC
           17616]
 gi|189336681|dbj|BAG45750.1| putative adenine-specific DNA-methyltransferase [Burkholderia
           multivorans ATCC 17616]
 gi|221167572|gb|EEE00042.1| DNA modification methylase RsrI [Burkholderia multivorans CGD1]
          Length = 283

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 69/259 (26%), Positives = 119/259 (45%), Gaps = 27/259 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++   + ++   +LP  S+DLI ADPPY L  +        S               +A+
Sbjct: 34  ELHNRDFLTEAARLPDASIDLIVADPPYGLGKDYGNDSDKRSG--------------DAF 79

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +TR WL      LKP+G+++V  ++     I + L+     ++N+I+W +  P     
Sbjct: 80  LEWTREWLELAIPKLKPSGSMYVFCTWQYAPEIFSFLK-TKLTMINEIIWDRRVPSMGGT 138

Query: 142 GRRFQNAHETLIWASPSPKAK------GYTFNYDALKAANEDVQMRSDWL------IPIC 189
            RRF + H+ + + + S             ++ D  KA +  +   S WL        + 
Sbjct: 139 TRRFTSVHDNIGFFAVSKAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVW 198

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           S S   R       HPTQKP  ++ R++++S  PG  +LDPF GSGT+     +  R F+
Sbjct: 199 SVSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFV 258

Query: 250 GIEMKQDYIDIATKRIASV 268
           G E+ + Y  IA +R+ ++
Sbjct: 259 GYEINESYCAIARERVHAL 277


>gi|317181350|dbj|BAJ59134.1| adenine specific DNA methyltransferase [Helicobacter pylori F57]
          Length = 232

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 76/247 (30%), Positives = 114/247 (46%), Gaps = 23/247 (9%)

Query: 22  KIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDKFSSF 78
           +I   N+  +++        VD I  DPPYN+ +         +    +    WDK    
Sbjct: 3   QIHHANAFEIIKDFYQQDLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDK---- 58

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
              +     W+     ++ PNG + +  SY  I  I   L+   F + + I W K+NPMP
Sbjct: 59  ---NFRLLEWIKRYAPLVNPNGCMVIFCSYRFISYIADFLEENGFIVKDFIQWVKNNPMP 115

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
               RR+    E  +WA        + FN    K  NE          P+ SG E+++  
Sbjct: 116 RNINRRYVQDTEFALWAVKKKA--KWVFN----KPKNEKYLRPLILKSPVVSGLEKVK-- 167

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQK  AL+ +I+   T P DI+LDPF GSGT+G   K+L R+FIGIE +++  
Sbjct: 168 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLERNFIGIESEKECF 222

Query: 259 DIATKRI 265
            IA +R+
Sbjct: 223 QIAKERL 229


>gi|187921472|ref|YP_001890504.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           phytofirmans PsJN]
 gi|187719910|gb|ACD21133.1| DNA methylase N-4/N-6 domain protein [Burkholderia phytofirmans
           PsJN]
          Length = 301

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 68/259 (26%), Positives = 121/259 (46%), Gaps = 27/259 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +++  + ++ +  +P  S+DLI  DPPY L   G+ Y  D               + E +
Sbjct: 38  QLLNRDFLTDVANIPDGSIDLIVCDPPYGL---GKDYGNDS-----------DMRTGEDF 83

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+TR WL      LKP+G+L++  ++     I + L+     ++N+I+W +  P     
Sbjct: 84  LAWTRGWLELAIPKLKPSGSLYIFCTWQYAPEIFSFLK-TKLTMINEIIWDRRVPSMGGT 142

Query: 142 GRRFQNAHETLIWASPSPKAK------GYTFNYDALKAANEDVQMRSDWL------IPIC 189
            RRF + H+ + + + S             ++    KA +  +   S WL        + 
Sbjct: 143 VRRFTSVHDNIGFFAVSKDYFFDLDPVRIPYDAATKKARSRKLFEGSKWLEVGYNPKDVW 202

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           S S   R       HPTQKP  ++ R++++S   G  +LDPF GSGT+     + +R F+
Sbjct: 203 SVSRLHRQHAERVAHPTQKPLEIVERMVLASCPKGGRVLDPFMGSGTTAVACARQQREFV 262

Query: 250 GIEMKQDYIDIATKRIASV 268
           G E+ + Y  IA +R+++ 
Sbjct: 263 GYEINESYCAIARERVSAA 281


>gi|193215282|ref|YP_001996481.1| DNA methylase N-4/N-6 domain-containing protein [Chloroherpeton
           thalassium ATCC 35110]
 gi|193088759|gb|ACF14034.1| DNA methylase N-4/N-6 domain protein [Chloroherpeton thalassium
           ATCC 35110]
          Length = 267

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 64/296 (21%), Positives = 123/296 (41%), Gaps = 45/296 (15%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ-------L 53
           M+ K  +   E      ++ +K I GN++ V++++P  S++L+   PPYNL+        
Sbjct: 1   MNSKERMKYPE------DFLNKFICGNAVDVMKQIPDGSIELVVTSPPYNLKNSTGNGMK 54

Query: 54  NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
           +G+  +  ++ +      ++     + Y  + R  L    R++  NG ++    +     
Sbjct: 55  DGRGGKWSNAALINGYSHYNDNMPHDEYVEWQRECLAEMLRIIPENGAIFYNHKWRVQ-- 112

Query: 114 IGTMLQNLNFWILN----DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
              +LQ+ N  +       I+  +     NF    F   +E +   +          N  
Sbjct: 113 -AGLLQDRNDIVSGFPVRQIIIWRRKGGINFNPGYFLPTYEVIYLIAKPNFKLAKKANAH 171

Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
                                G      ++ +  HP   P  L+ RI++S+    D++LD
Sbjct: 172 ---------------------GDIWEFGQESKNKHPAPFPVELIERIILSTD--ADVVLD 208

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           PF GSGT+   AK L R FIGI++  +Y ++A +R+A+  P+  I+      K  +
Sbjct: 209 PFMGSGTTALAAKNLDRQFIGIDISPEYCEMAEERLAN--PMSVIKQITTNKKEKQ 262


>gi|73541991|ref|YP_296511.1| DNA methylase N-4/N-6 [Ralstonia eutropha JMP134]
 gi|72119404|gb|AAZ61667.1| DNA methylase N-4/N-6 [Ralstonia eutropha JMP134]
          Length = 304

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 64/250 (25%), Positives = 114/250 (45%), Gaps = 27/250 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++ + +    + +LP  SVDL+ ADPPY L   G+ Y  D  L+             +AY
Sbjct: 30  QLFQEDMFEGIARLPDGSVDLVVADPPYGL---GKDYGNDSDLLSG-----------DAY 75

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             ++  W+ A    L P GTL++  ++     +  ML+     ++N+I+W +  P     
Sbjct: 76  LEWSERWMDAVCPKLAPKGTLYLFCTWQYSPELFVMLKR-RLTMINEIIWDRRVPSMGGT 134

Query: 142 GRRFQNAHETLIWASPSPKAK------GYTFNYDALKAANEDVQMRSDWL------IPIC 189
            R++ + H+ + + + +             ++ +  KA +        WL        + 
Sbjct: 135 TRKYSSVHDNIGFFARARDYYFDLDPVRIPYDPETKKARSRPRFEGKKWLEMGYNPKDLW 194

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           S S   R       HPTQKP  ++ R+++SS  PG ++LDPF GSGT+     +  R F 
Sbjct: 195 SISRIHRQDPERANHPTQKPLEIVERMVLSSCPPGGLVLDPFAGSGTTAVACLRHGRRFA 254

Query: 250 GIEMKQDYID 259
           G E+  +Y++
Sbjct: 255 GFEINPEYVE 264


>gi|229826749|ref|ZP_04452818.1| hypothetical protein GCWU000182_02125 [Abiotrophia defectiva ATCC
           49176]
 gi|229789619|gb|EEP25733.1| hypothetical protein GCWU000182_02125 [Abiotrophia defectiva ATCC
           49176]
          Length = 312

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 81/287 (28%), Positives = 135/287 (47%), Gaps = 38/287 (13%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
            + + +  + E  DK I GN++ +L  LP  SVDL+  DPPYNL  +    +   +    
Sbjct: 24  MVLDKKAELSEILDKTILGNTLEILSLLPENSVDLLIVDPPYNLDKDFHGNKFKRT---- 79

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
                    S E Y+ +T +W+   + +LK N T++V   + +  +I  +L+   F + N
Sbjct: 80  ---------SGEIYEEYTESWIKLVKPLLKKNATIYVCCDWLSSSQIFMVLKE-YFHVQN 129

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK------AANEDVQMR 181
            I W++           ++N  E + +A+    +  YTFN +A+K      A  ++    
Sbjct: 130 RITWQREKGRGALTN--WKNGMEDIWFAT---NSNKYTFNVEAVKVRRSVIAPYKEDGKP 184

Query: 182 SDWLIP-------------ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
            DW                    S    +      HPTQKPE LL++++++S+  GD++L
Sbjct: 185 KDWEETKEGRFRNTYPSNFWDDISIPYWSMPENTAHPTQKPEKLLAKLILASSNEGDVVL 244

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           DPF GSG++   AKKL R +IGIE  + Y   A KR+   +    I+
Sbjct: 245 DPFLGSGSTSVTAKKLGRHYIGIEQNEQYCVWAEKRLHMAETDKTIQ 291


>gi|124003829|ref|ZP_01688677.1| adenine-specific DNA methylase [Microscilla marina ATCC 23134]
 gi|123990884|gb|EAY30351.1| adenine-specific DNA methylase [Microscilla marina ATCC 23134]
          Length = 403

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 77/282 (27%), Positives = 125/282 (44%), Gaps = 44/282 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +K+ +G+ I +L KL A SVDL++ DPP+  Q N  L   D S     +D W    S ++
Sbjct: 4   NKLYQGHCIEILRKLEADSVDLVYFDPPFFTQKNHTLTNRDGSKKYQFSDHW---KSLDS 60

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMP 138
           Y       L+  RRVLK +G++++         I T+L  +       ++I+W       
Sbjct: 61  YLVLIEGCLIESRRVLKNSGSVFLHCDKTVSHHIRTVLDKVFGVKNFRSEIIWSYKRWSN 120

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV-------------------- 178
           + +G    NAH+ + + S + + K   +  D   + N D                     
Sbjct: 121 SKKG--LLNAHQNIYFYSKTKEFKFNQYYTDYAPSTNVDQILQERKKTANGKSVYKTDDS 178

Query: 179 ------------QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
                        +   W IP  +   +         +PTQKP  LL +IL   +  GD+
Sbjct: 179 GKVILGKEKKGVPLSDVWEIPYLNPKAK-----ERVGYPTQKPVLLLKQILNVGSNKGDL 233

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           I+DPF GSGT+   AK L R+FIGI+  ++ I +A +R+  +
Sbjct: 234 IVDPFCGSGTTCVAAKSLERNFIGIDSSEEAISLANQRLQDM 275


>gi|320103609|ref|YP_004179200.1| DNA methylase N-4/N-6 domain-containing protein [Isosphaera pallida
           ATCC 43644]
 gi|319750891|gb|ADV62651.1| DNA methylase N-4/N-6 domain protein [Isosphaera pallida ATCC
           43644]
          Length = 327

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 78/289 (26%), Positives = 134/289 (46%), Gaps = 44/289 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++ G++I+ L +L A SVDLI ADPPYNLQ                   WD+F++ EAY 
Sbjct: 55  LVTGDAIAWLNQLDAASVDLIVADPPYNLQKA----------------KWDRFATEEAYL 98

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            ++  W+ A RRVLK  G+L+V G       +  + +    W  +              G
Sbjct: 99  TWSLEWIAAARRVLKETGSLYVCGFSET---LADLKRPALRWFADCRWLVWHYRNKANLG 155

Query: 143 RRFQNAHETLIWASPSPKAK-----------GYTFNYDALKAAN----EDVQMRSDWLIP 187
           R +  +HE+++    +P  +           G+T  Y A   A      D + R+ W +P
Sbjct: 156 RDWGRSHESILHLRVTPAFRLRLDAVRVPYGGHTVKYPARTQARTSCFGDGRSRAPW-VP 214

Query: 188 ICSGSER--------LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
             +G++           N  GE+  HP+QKPE L+  ++++++   D+++DPF GSGT+ 
Sbjct: 215 HPAGAKPRDVLEYPTTCNGMGERTPHPSQKPEGLIRHLILAASDEHDLVIDPFSGSGTTV 274

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
             A++L R +IG + +  Y   A +R+ ++      +      +    R
Sbjct: 275 VAAQQLNRRWIGCDREPSYHAWAVRRLETLPNRSIADWLDHDRRAASHR 323


>gi|297379272|gb|ADI34159.1| Modification methylase [Helicobacter pylori v225d]
          Length = 232

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 77/247 (31%), Positives = 114/247 (46%), Gaps = 23/247 (9%)

Query: 22  KIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDKFSSF 78
           +I   N+  +++    +   VD I  DPPYN+ +         +    +    WDK    
Sbjct: 3   QIHHANAFEIIKDFYQQNLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDK---- 58

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
              +     W+     ++ PNG + +  SY  I  I   L+   F + + I W K+NPM 
Sbjct: 59  ---NFRLLEWIKRYAPLVNPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMQ 115

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
               RR+    E  +WA        + FN    K  NE          P+  G ER++  
Sbjct: 116 RNINRRYVQDTEFALWAVKKKA--KWVFN----KPENEKYLRPLILKSPVVGGLERVK-- 167

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQK  AL+ +I+   T P DI+LDPF GSGT+G   K+L R+FIGIE +++Y 
Sbjct: 168 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLERNFIGIESEKEYF 222

Query: 259 DIATKRI 265
            IA KR+
Sbjct: 223 QIAKKRL 229


>gi|323345089|ref|ZP_08085313.1| modification methylase BglII (N(4)) [Prevotella oralis ATCC 33269]
 gi|323094359|gb|EFZ36936.1| modification methylase BglII (N(4)) [Prevotella oralis ATCC 33269]
          Length = 260

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 70/263 (26%), Positives = 119/263 (45%), Gaps = 25/263 (9%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            DKI   +S   + ++P KSV L+   PPYN+ ++      +  +V +    +    S  
Sbjct: 1   MDKIFN-HSSEFMSEIPDKSVSLMVTSPPYNIDISYGNKWKNRRIVSSKGKKYADKQSEA 59

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVI--GSYHNI-----FRIGTMLQNLNFWILNDIVWR 132
            Y       +   +RVLK +G +W      Y N      F I    ++   ++ N ++W 
Sbjct: 60  DYRKMLDKVIKETKRVLKDDGQIWFNIKNRYENCVIQPPFWIMEYFKD--MYLKNIVIWN 117

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF--------NYDALKAANEDVQMRSDW 184
                     +RF + +E + + + +     +          NY   +  ++       W
Sbjct: 118 FDWGGATQ--KRFCSRYEYVFFFTKNKDKYTFNLDDVKIPALNYRPDRYKSQLKNPTDVW 175

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
            I + SG     N      HP+Q PE L+ RI+   T  GD++LDPF GSGT+  VAK+L
Sbjct: 176 KISLVSG-----NSPERTEHPSQYPEELVERIIKVGTHEGDLVLDPFMGSGTTAVVAKRL 230

Query: 245 RRSFIGIEMKQDYIDIATKRIAS 267
            R ++G E++ +YI+IA KR+ +
Sbjct: 231 NRRYVGYEIEPEYIEIANKRLEN 253


>gi|32477674|ref|NP_870668.1| adenine-specific methyltransferase [Rhodopirellula baltica SH 1]
 gi|32448228|emb|CAD77745.1| adenine-specific methyltransferase [Rhodopirellula baltica SH 1]
          Length = 608

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 121/296 (40%), Gaps = 52/296 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I   + I  + +LPA  +DL FADPP+N+                  D +D     + Y
Sbjct: 14  QIHVSDCIDGMAELPAGCIDLAFADPPFNIGYTY--------------DVYDDSLESDEY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             ++ +W+    RVL  +G  W+         +  + Q + F   + ++W  +  +    
Sbjct: 60  IQWSESWIRGVHRVLADDGAFWLAIGDEYAAELKVLAQQIGFQCRSWVIWYYTFGVHC-- 117

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD------------------ 183
             +F  +H  L       K   +  +  +++  +    + +D                  
Sbjct: 118 KYKFTRSHAHLFHFVKDEKHFKFNADDPSVRVPSARQLVYNDRRANSKGRMPDDTWILRP 177

Query: 184 -------------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
                        W  P  +G+     K+    H  Q PE LL RI+ + + PGD +LDP
Sbjct: 178 QDLPYGFTADEDIWYFPRVAGTF----KERAGFHGCQMPEQLLGRIIRACSDPGDKVLDP 233

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
           F GS T+ AVAKKL R FI  EM ++Y+ + T+R+  ++ +G+         R+ P
Sbjct: 234 FSGSATTVAVAKKLGREFISFEMSEEYVSLGTERLEQIR-VGDPLTGAADPLRSAP 288


>gi|327539140|gb|EGF25770.1| adenine-specific methyltransferase [Rhodopirellula baltica WH47]
          Length = 608

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 121/296 (40%), Gaps = 52/296 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I   + I  + +LPA  +DL FADPP+N+                  D +D     + Y
Sbjct: 14  QIHVSDCIDGMAELPAGCIDLAFADPPFNIGYTY--------------DVYDDSLESDEY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             ++ +W+    RVL  +G  W+         +  + Q + F   + ++W  +  +    
Sbjct: 60  IQWSESWIRGVHRVLADDGAFWLAIGDEYAAELKVLAQQIGFQCRSWVIWYYTFGVHC-- 117

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD------------------ 183
             +F  +H  L       K   +  +  +++  +    + +D                  
Sbjct: 118 KYKFTRSHAHLFHFVKDEKHFKFNADDPSVRVPSARQLVYNDRRANSKGRMPDDTWILRP 177

Query: 184 -------------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
                        W  P  +G+     K+    H  Q PE LL RI+ + + PGD +LDP
Sbjct: 178 QDLPYGFTADEDIWYFPRVAGTF----KERAGFHGCQMPEQLLGRIIRACSDPGDKVLDP 233

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
           F GS T+ AVAKKL R FI  EM ++Y+ + T+R+  ++ +G+         R+ P
Sbjct: 234 FSGSATTVAVAKKLGREFISFEMSEEYVSLGTERLEQIR-VGDPLTGAADPLRSAP 288


>gi|221196942|ref|ZP_03569989.1| DNA modification methylase RsrI [Burkholderia multivorans CGD2M]
 gi|221203612|ref|ZP_03576631.1| DNA modification methylase RsrI [Burkholderia multivorans CGD2]
 gi|221177546|gb|EEE09974.1| DNA modification methylase RsrI [Burkholderia multivorans CGD2]
 gi|221183496|gb|EEE15896.1| DNA modification methylase RsrI [Burkholderia multivorans CGD2M]
          Length = 283

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 69/259 (26%), Positives = 119/259 (45%), Gaps = 27/259 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++   + ++   +LP  S+DLI ADPPY L  +        S               +A+
Sbjct: 34  ELHNRDFLTEAARLPDASIDLIVADPPYGLGKDYGNDSDKRSG--------------DAF 79

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +TR WL      LKP+G+++V  ++     I + L+     ++N+I+W +  P     
Sbjct: 80  LGWTREWLELAIPKLKPSGSMYVFCTWQYAPEIFSFLK-TKLTMINEIIWDRRVPSMGGT 138

Query: 142 GRRFQNAHETLIWASPSPKAK------GYTFNYDALKAANEDVQMRSDWL------IPIC 189
            RRF + H+ + + + S             ++ D  KA +  +   S WL        + 
Sbjct: 139 TRRFTSVHDNIGFFAVSKAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVW 198

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           S S   R       HPTQKP  ++ R++++S  PG  +LDPF GSGT+     +  R F+
Sbjct: 199 SVSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFV 258

Query: 250 GIEMKQDYIDIATKRIASV 268
           G E+ + Y  IA +R+ ++
Sbjct: 259 GYEINESYCAIARERVHAL 277


>gi|303242614|ref|ZP_07329089.1| DNA methylase N-4/N-6 domain protein [Acetivibrio cellulolyticus
           CD2]
 gi|302589822|gb|EFL59595.1| DNA methylase N-4/N-6 domain protein [Acetivibrio cellulolyticus
           CD2]
          Length = 266

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 81/258 (31%), Positives = 127/258 (49%), Gaps = 31/258 (12%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +I G+ +SVL  L  K++DLIFADPPYNL  +               +  D + +   Y 
Sbjct: 20  VINGDCMSVLPYLKEKTIDLIFADPPYNLGKD-------------FGNDSDNWKNKSEYL 66

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            +  AW+  C RVLK NGT++++ S  NI  I   L+     I N  +    +       
Sbjct: 67  HWCYAWIDECFRVLKDNGTIYIMNSTQNISYIDVYLREKYNVINN--IVWYYDSSGVQSK 124

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR-------------SDWLIP-- 187
            ++ + +E +I A+ S KA+ YTFN++ +K       +R             ++  +P  
Sbjct: 125 YKYGSLYEPVIMANKSAKAR-YTFNWENIKVEARTGAVRKLIDYRKTPPQPYNNEKVPGN 183

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           +   S         + HP+QKPE LL RI+ +S+ P +I+LDPF G+ T+  VA +L R 
Sbjct: 184 VWEFSRVRYRMSEYENHPSQKPEILLERIVKASSNPDEIVLDPFSGTFTTAVVANRLGRK 243

Query: 248 FIGIEMKQDYIDIATKRI 265
            IGIE+   Y  I  +R+
Sbjct: 244 SIGIELNDCYYGIGLRRV 261


>gi|161528827|ref|YP_001582653.1| DNA methylase N-4/N-6 domain-containing protein [Nitrosopumilus
           maritimus SCM1]
 gi|160340128|gb|ABX13215.1| DNA methylase N-4/N-6 domain protein [Nitrosopumilus maritimus
           SCM1]
          Length = 258

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 58/249 (23%), Positives = 111/249 (44%), Gaps = 8/249 (3%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   N I  +  +P   +DL+  DPP+ +    +    + +    ++   +     E 
Sbjct: 7   NKIYNQNCIDGMSSIPKNKIDLVITDPPFAINFKAKKANYNRTSSRVLSGYNE--IKPED 64

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  FT +W+    R+LK +G+++V   ++N+  I   L ++ F  +N I+W+    +   
Sbjct: 65  YYDFTFSWMTEVYRILKDSGSMYVFSGWNNLKDILRALDDVGFVTINHIIWKYQFGVVT- 123

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTF--NYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             ++F  +H   ++     K + +     +       +   +       +          
Sbjct: 124 -KKKFVTSHYHCLYVCKDDKKRKFFPFSRFKKEDKTKDGRSLHYKDKEDVWDIKREYWT- 181

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            G++  PT+ P  L+ +IL  S++  DI+LDPF GSG    V+K L R ++G E+  DY 
Sbjct: 182 -GDEKTPTKLPSELIQKILEYSSEKKDIVLDPFIGSGQVAVVSKSLGRRYLGFEIVPDYY 240

Query: 259 DIATKRIAS 267
             A KR+  
Sbjct: 241 KFAKKRLDK 249


>gi|172062886|ref|YP_001810537.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           ambifaria MC40-6]
 gi|171995403|gb|ACB66321.1| DNA methylase N-4/N-6 domain protein [Burkholderia ambifaria
           MC40-6]
          Length = 283

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 68/259 (26%), Positives = 119/259 (45%), Gaps = 27/259 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++   + ++   +LP  S+DLI ADPPY L  +        S               + +
Sbjct: 34  ELHNRDFMTEAARLPDASIDLIVADPPYGLGKDYGNDSDKRSG--------------DDF 79

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+TR WL      LKP+G++++  ++     I + L+     ++N+I+W +  P     
Sbjct: 80  LAWTREWLELAIPKLKPSGSMYIFCTWQYAPEIFSFLK-TQLTMVNEIIWDRRVPSMGGT 138

Query: 142 GRRFQNAHETLIWASPSPKAK------GYTFNYDALKAANEDVQMRSDWL------IPIC 189
            RRF + H+ + + + S             ++ D  KA +  +   S WL        + 
Sbjct: 139 TRRFTSVHDNIGFFAVSKAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVW 198

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           S S   R       HPTQKP  ++ R++++S  PG  +LDPF GSGT+     +  R F+
Sbjct: 199 SVSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFV 258

Query: 250 GIEMKQDYIDIATKRIASV 268
           G E+ + Y  IA +R+ ++
Sbjct: 259 GYEINESYCAIAHERVNAL 277


>gi|115358100|ref|YP_775238.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           ambifaria AMMD]
 gi|115283388|gb|ABI88904.1| DNA methylase N-4/N-6 domain protein [Burkholderia ambifaria AMMD]
          Length = 283

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 68/259 (26%), Positives = 119/259 (45%), Gaps = 27/259 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++   + ++   +LP  S+DLI ADPPY L  +        S               + +
Sbjct: 34  ELHNRDFMTEAARLPDASIDLIVADPPYGLGKDYGNDSDKRSG--------------DDF 79

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+TR WL      LKP+G++++  ++     I + L+     ++N+I+W +  P     
Sbjct: 80  LAWTREWLELAIPKLKPSGSMYIFCTWQYAPEIFSFLK-TQLTMVNEIIWDRRVPSMGGT 138

Query: 142 GRRFQNAHETLIWASPSPKAK------GYTFNYDALKAANEDVQMRSDWL------IPIC 189
            RRF + H+ + + + S             ++ D  KA +  +   S WL        + 
Sbjct: 139 TRRFTSVHDNIGFFAVSKAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVW 198

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           S S   R       HPTQKP  ++ R++++S  PG  +LDPF GSGT+     +  R F+
Sbjct: 199 SVSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFV 258

Query: 250 GIEMKQDYIDIATKRIASV 268
           G E+ + Y  IA +R+ ++
Sbjct: 259 GYEINESYCAIAHERVNAL 277


>gi|323529195|ref|YP_004231347.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia sp.
           CCGE1001]
 gi|323386197|gb|ADX58287.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. CCGE1001]
          Length = 303

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 67/259 (25%), Positives = 121/259 (46%), Gaps = 27/259 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +++  + ++ +  +P  S+DLI  DPPY L   G+ Y  D               + + +
Sbjct: 39  QLLNRDFLTDVANIPDGSIDLILCDPPYGL---GKDYGNDS-----------DMRTGDDF 84

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+TR WL      LKP+G+L++  ++     I + L+     ++N+I+W +  P     
Sbjct: 85  LAWTRGWLELAIPKLKPSGSLYIFCTWQYAPEIFSFLK-TRLLMINEIIWDRRVPSMGGT 143

Query: 142 GRRFQNAHETLIWASPSPKAK------GYTFNYDALKAANEDVQMRSDWL------IPIC 189
            RRF + H+ + + + S             ++    KA +  +   S WL        + 
Sbjct: 144 TRRFTSVHDNIGFFAVSKDYYFDLDPVRIPYDAATKKARSRKLFEGSKWLELGYNPKDVW 203

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           S S   R       HPTQKP  ++ R++++S   G  +LDPF GSGT+     + +R F+
Sbjct: 204 SVSRLHRQHAERVDHPTQKPLEIVERMVLASCPKGGRVLDPFMGSGTTAVACARQQREFV 263

Query: 250 GIEMKQDYIDIATKRIASV 268
           G E+ + Y  IA +R+++ 
Sbjct: 264 GYEINESYCAIARERVSAA 282


>gi|331658494|ref|ZP_08359438.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA206]
 gi|331054159|gb|EGI26186.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA206]
          Length = 263

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 64/256 (25%), Positives = 108/256 (42%), Gaps = 32/256 (12%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS-----LVDAVTDSWDKFSSFE 79
           +GN++ +L  +  +S+D +  DPPY+     +  R +       L       +D F+   
Sbjct: 30  RGNALEILPLIEPESIDALITDPPYSSGATHKAGRTNQGSHAKYLNGGNLHRFDGFAGEN 89

Query: 80  A----YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
                +  +T+ W+    R ++P G   V   +  +  +    Q   F     IVW K  
Sbjct: 90  MDARSWAYWTQLWMAQAHRAVRPGGYALVFTDWRQLPALTDAFQASGFTWRGIIVWNKGR 149

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
                    F++  E ++W S     K  +  +D                 P+       
Sbjct: 150 GSRTPHTGYFRHQCEYIVWGSKGHLDKSPSGPFDGCMT------------FPVI------ 191

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                +K HPT KPE L++ ++ ++   G  +LDPF GSGT+G  A K  R FIGIE   
Sbjct: 192 ---PSKKRHPTGKPEELMAELVRTA-NSGGTVLDPFMGSGTTGVAALKAGRKFIGIETSD 247

Query: 256 DYIDIATKRIA-SVQP 270
            Y D+AT+R+  +++P
Sbjct: 248 HYFDVATQRLKTAIEP 263


>gi|238024260|ref|YP_002908492.1| DNA modification methylase [Burkholderia glumae BGR1]
 gi|237878925|gb|ACR31257.1| DNA modification methylase [Burkholderia glumae BGR1]
          Length = 282

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 72/253 (28%), Positives = 118/253 (46%), Gaps = 27/253 (10%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
             + ++    LP  S+DLI ADPPY L   G+ Y  D   +             +A+ A+
Sbjct: 36  HRDFLTDAASLPDASIDLIVADPPYGL---GKDYGNDSDKLQG-----------DAHLAW 81

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
           TR WL      LK +G+L+V  ++     I + L+     ++N+I+W +  P      RR
Sbjct: 82  TRQWLELAIPKLKASGSLYVFCTWQYAPEIFSFLK-TRLTMVNEIIWDRRVPSMGGTTRR 140

Query: 145 FQNAHETLIWASPSPKAK------GYTFNYDALKAANEDVQMRSDWL------IPICSGS 192
           + + H+ + + + S             ++ +  KA +  +   S WL        + S S
Sbjct: 141 YTSVHDNIGFFAVSKSYYFDLDPVRIPYDAETKKARSRKLFEGSKWLELGYNPKDVWSIS 200

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
              R       HPTQKP  L+ R+++SS  PG ++LDPF GSGT+     +  R F+G E
Sbjct: 201 RLHRQHAERVDHPTQKPLELVERMVLSSCPPGGVVLDPFMGSGTTAVACARHGRGFVGYE 260

Query: 253 MKQDYIDIATKRI 265
           + + Y  IA +R+
Sbjct: 261 INESYCAIARERV 273


>gi|167840376|ref|ZP_02467060.1| DNA modification methylase RsrI [Burkholderia thailandensis MSMB43]
          Length = 286

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 73/262 (27%), Positives = 121/262 (46%), Gaps = 33/262 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++   + +     LP  S+DLI ADPPY L  +        S               + +
Sbjct: 34  ELHNRDFLHDAASLPDASIDLIVADPPYGLGKDYGNDSDKRSG--------------DEH 79

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+TR WL      LKP G+++V  ++     I + L+     ++N+I+W +  P     
Sbjct: 80  LAWTREWLELAIPKLKPTGSMYVFCTWQYAPEIFSFLK-TKLTMVNEIIWDRRVPSMGGT 138

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR---------SDWL------I 186
            RRF + H+ + + +    +KGY F+ D ++   +    +         S WL       
Sbjct: 139 TRRFTSVHDNIGFFA---VSKGYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPK 195

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            + S S   R       HPTQKP  ++ R++++S  PG  +LDPF GSGT+     + RR
Sbjct: 196 DVWSVSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQRR 255

Query: 247 SFIGIEMKQDYIDIATKRIASV 268
            F+G E+ + Y  IA +R+AS+
Sbjct: 256 DFVGYEINESYCAIARERVASL 277


>gi|134293157|ref|YP_001116893.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134136314|gb|ABO57428.1| DNA methylase N-4/N-6 domain protein [Burkholderia vietnamiensis
           G4]
          Length = 283

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 69/259 (26%), Positives = 120/259 (46%), Gaps = 27/259 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++   + ++   +LP  S+DLI ADPPY L  +        S               +A+
Sbjct: 34  ELYNRDFMTEAARLPDASIDLIVADPPYGLGKDYGNDSDKRSG--------------DAF 79

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+TR WL      LKP+G++++  ++     I + L+     ++N+I+W +  P     
Sbjct: 80  LAWTREWLDLAIPKLKPSGSMYIFCTWQYAPEIFSFLK-TKLTMVNEIIWDRRVPSMGGT 138

Query: 142 GRRFQNAHETLIWASPSPKAK------GYTFNYDALKAANEDVQMRSDWL------IPIC 189
            RRF + H+ + + + S             ++ D  KA +  +   S WL        + 
Sbjct: 139 TRRFTSVHDNIGFFAVSKAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVW 198

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           S S   R       HPTQKP  ++ R++++S  PG  +LDPF GSGT+     +  R F+
Sbjct: 199 SVSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFV 258

Query: 250 GIEMKQDYIDIATKRIASV 268
           G E+ + Y  IA +R+ ++
Sbjct: 259 GYEINESYCAIAHERVNAL 277


>gi|325523911|gb|EGD02128.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia sp.
           TJI49]
          Length = 284

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 69/259 (26%), Positives = 121/259 (46%), Gaps = 27/259 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++   + ++   +LP  S+DLI ADPPY L  +        S               +A+
Sbjct: 35  ELHNRDFMTEAARLPDASIDLIVADPPYGLGKDYGNDSDKRSG--------------DAF 80

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+TR WL      LKP+G++++  ++     I + L+     ++N+I+W +  P     
Sbjct: 81  LAWTREWLELAVPKLKPSGSMYIFCTWQYAPEIFSFLK-TRLTMVNEIIWDRRVPSMGGT 139

Query: 142 GRRFQNAHETLIWASPSPKAK------GYTFNYDALKAANEDVQMRSDWL------IPIC 189
            RRF + H+ + + + S             ++ D  KA +  +   S WL        + 
Sbjct: 140 TRRFTSVHDNIGFFAVSKAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVW 199

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           S S   R       HPTQKP  ++ R++++S  PG  +LDPF GSGT+     +  R F+
Sbjct: 200 SVSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFV 259

Query: 250 GIEMKQDYIDIATKRIASV 268
           G E+ + Y  IA +R++++
Sbjct: 260 GYEINESYCAIAHERVSAL 278


>gi|209518946|ref|ZP_03267756.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. H160]
 gi|209500598|gb|EEA00644.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. H160]
          Length = 304

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 71/277 (25%), Positives = 123/277 (44%), Gaps = 28/277 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +++  + ++ +  +P  S+DLI  DPPY L   G+ Y  D               + E +
Sbjct: 39  QLLNRDFLTDVANIPDGSIDLIVCDPPYGL---GKDYGNDS-----------DMRTGEEF 84

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +TR WL      LKP G+L++  ++     I + L+     ++N+I+W +  P     
Sbjct: 85  LVWTRGWLELAVPKLKPTGSLYIFCTWQYAPEIFSFLK-TKLTMVNEIIWDRRVPSMGGT 143

Query: 142 GRRFQNAHETLIWASPSPKAK------GYTFNYDALKAANEDVQMRSDWL------IPIC 189
            RRF + H+ + + + S             ++    KA +  +   S WL        + 
Sbjct: 144 TRRFTSVHDNIGFFAVSKDYFFDLDPVRIPYDAVTKKARSRKLFEGSKWLELGYNPKDVW 203

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           S S   R       HPTQKP  ++ R+++SS   G  +LDPF GSGT+     + +R F+
Sbjct: 204 SVSRLHRQHAERVAHPTQKPLEIVERMVLSSCPKGGRVLDPFMGSGTTAVACVRHQREFV 263

Query: 250 GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
           G E+ + Y  IA +R+ SV  +           + +P
Sbjct: 264 GYEINESYCAIARERV-SVAAMPAAPRRTRAKPKVQP 299


>gi|170703050|ref|ZP_02893876.1| DNA methylase N-4/N-6 domain protein [Burkholderia ambifaria
           IOP40-10]
 gi|170132042|gb|EDT00544.1| DNA methylase N-4/N-6 domain protein [Burkholderia ambifaria
           IOP40-10]
          Length = 283

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 68/259 (26%), Positives = 119/259 (45%), Gaps = 27/259 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++   + ++   +LP  S+DLI ADPPY L  +        S               + +
Sbjct: 34  ELHNRDFMTEAARLPDASIDLIVADPPYGLGKDYGNDSDKRSG--------------DVF 79

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+TR WL      LKP+G++++  ++     I + L+     ++N+I+W +  P     
Sbjct: 80  LAWTREWLELAIPKLKPSGSMYIFCTWQYAPEIFSFLK-TKLTMVNEIIWDRRVPSMGGT 138

Query: 142 GRRFQNAHETLIWASPSPKAK------GYTFNYDALKAANEDVQMRSDWL------IPIC 189
            RRF + H+ + + + S             ++ D  KA +  +   S WL        + 
Sbjct: 139 TRRFTSVHDNIGFFAVSKAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVW 198

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           S S   R       HPTQKP  ++ R++++S  PG  +LDPF GSGT+     +  R F+
Sbjct: 199 SVSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFV 258

Query: 250 GIEMKQDYIDIATKRIASV 268
           G E+ + Y  IA +R+ ++
Sbjct: 259 GYEINESYCAIAHERVNAL 277


>gi|206562848|ref|YP_002233611.1| putative DNA methylase [Burkholderia cenocepacia J2315]
 gi|198038888|emb|CAR54850.1| putative DNA methylase [Burkholderia cenocepacia J2315]
          Length = 283

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 68/259 (26%), Positives = 119/259 (45%), Gaps = 27/259 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++   + ++    LP  S+DLI ADPPY L  +        S               + +
Sbjct: 34  ELHNRDFLTHAAHLPDASIDLIVADPPYGLGKDYGNDSDKRSG--------------DDF 79

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+TR WL      LKP+G++++  ++     I + L+     ++N+I+W +  P     
Sbjct: 80  LAWTREWLDLAIPKLKPSGSMYIFCTWQYAPEIFSFLK-TKLTMVNEIIWDRRVPSMGGT 138

Query: 142 GRRFQNAHETLIWASPSPKAK------GYTFNYDALKAANEDVQMRSDWL------IPIC 189
            RRF + H+ + + + S             ++ D  KA +  +   S WL        + 
Sbjct: 139 TRRFTSVHDNIGFFAVSKAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVW 198

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           S S   R       HPTQKP  ++ R++++S  PG  +LDPF GSGT+     +  R F+
Sbjct: 199 SVSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFV 258

Query: 250 GIEMKQDYIDIATKRIASV 268
           G E+ + Y  IA +R++++
Sbjct: 259 GYEINESYCAIAHERVSAL 277


>gi|225163822|ref|ZP_03726119.1| Site-specific DNA-methyltransferase (adenine-specific) [Opitutaceae
           bacterium TAV2]
 gi|224801580|gb|EEG19879.1| Site-specific DNA-methyltransferase (adenine-specific) [Opitutaceae
           bacterium TAV2]
          Length = 641

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 160/419 (38%), Gaps = 86/419 (20%)

Query: 6   SLAINENQNS-IFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPD 61
           +L + E ++S + ++++++I G++  VL  L A+    VDLI+ DPP+++  +  +  P 
Sbjct: 62  ALDLFEKKSSRLDDFRNRLIWGDNKLVLASLLAEFKGKVDLIYIDPPFDVGADFTMSLPV 121

Query: 62  HSLVD------------AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
               +            A  D W K +  ++Y       L   + +L   G+++V   + 
Sbjct: 122 GDGKETLEKEQSTIEAVAYRDMWGKGT--DSYLHMMYERLSLMKELLSERGSIYVHCDHR 179

Query: 110 NIFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
               +  ++  +       N ++W   N        +F + H+ L + + +     +TFN
Sbjct: 180 VDSLVRRVMDEIFSPERFRNQMIWWYRNSGMKAASDKFHHKHDVLYFYAKNSV---FTFN 236

Query: 168 YDALKAANEDVQMRS---------------------------------DWLIPICSGSER 194
                  + D   R                                   W +PI  G   
Sbjct: 237 GYREPLKDGDSGKRRAYKFDSKLKKPLPVYDKEGKPVYYQVGDILAGSVWDVPILQGG-- 294

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
               D    +PTQKPEALL RI+ +S+  GD++ D F GSGT+GAVA++L R +I  ++ 
Sbjct: 295 ----DENIGYPTQKPEALLERIIKASSNEGDLVADFFCGSGTTGAVAERLGRRWILADLG 350

Query: 255 QDYIDIATKRIASVQP----------------LGNIELTVLTGKR------TEPRVAFNL 292
           +  I    KR+  +Q                 LG  E      K+         RV    
Sbjct: 351 RFAIHTTRKRLIQLQSELHSGEKPYRAFDVYNLGRYERQWWQKKQLLGADEEHRRVVLQF 410

Query: 293 LVERGLIQ-PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSE-TCNGWNF 349
                L Q P  +L  ++G     V    ++ +  EL  + +        E  C  W F
Sbjct: 411 HGASALEQPPSPLLHGSKGGAVCHVDGIDSIFTRDELREVAKATVGTGAKELHCLAWEF 469


>gi|296142046|gb|ADG95997.1| N6-adenine methyltransferase [Helicobacter pylori]
          Length = 230

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 76/247 (30%), Positives = 113/247 (45%), Gaps = 24/247 (9%)

Query: 22  KIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDKFSSF 78
           +I   N+  +++    +   VD I  DPPYN+ +         +    +    WDK    
Sbjct: 2   QIYHANAFEIIKDFYQQNLKVDAIITDPPYNISVKNHFSTLKSAKRQGIDFGEWDK---- 57

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
              +     W+     ++ PNG + +  SY  I      L+   F + + I W K+NPMP
Sbjct: 58  ---NFKLLEWIKRYAPLVNPNGCMVIFCSYRFISY-ADFLEENGFMVKDLIQWVKTNPMP 113

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
               RR+    E  +WA        + FN    K  NE          P+  G ER++  
Sbjct: 114 RNIHRRYVQDTEFALWAVKKKA--KWVFN----KPENEKYLRPLILKSPVVGGLERVK-- 165

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQK  AL+ +I+   T P DI+LDPF GSGT+G   K L R+FIGIE++++Y 
Sbjct: 166 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKNLERNFIGIELEKEYF 220

Query: 259 DIATKRI 265
             A KR+
Sbjct: 221 QTAKKRL 227


>gi|320177588|gb|EFW52578.1| Putative methyltransferase [Shigella boydii ATCC 9905]
          Length = 261

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 60/253 (23%), Positives = 106/253 (41%), Gaps = 31/253 (12%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS-----WDKFSSFE 79
           +GN++ +L  +  +S+D +  DPPY+     +  R +        +S     +D F+   
Sbjct: 28  RGNALEILPLIEPESIDALITDPPYSSGATHKAGRTNQGSHAKYLNSESLHRFDGFAGEN 87

Query: 80  A----YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
                +  +T+ W+    R ++P G   +   +  +  +    Q   F     I W K  
Sbjct: 88  MDARSWAYWTQLWMAQAHRAVRPGGYALIFTDWRQLPALTDAFQASGFTWRGIIAWNKGR 147

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
                    F++  E ++W S     K  +  +D                 P+       
Sbjct: 148 GSRTPHTGYFRHQCEYIVWGSKGHLDKSPSGPFDGCMT------------YPVI------ 189

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                +K+HPT KPE L++ ++ ++   G  +LDPF GSGT+G  A K  R FIGIE  +
Sbjct: 190 ---PSKKMHPTGKPEELMAELVRTA-NSGGTVLDPFMGSGTTGVAALKAGRRFIGIETSE 245

Query: 256 DYIDIATKRIASV 268
            Y ++AT+R+   
Sbjct: 246 HYFEVATQRLQKT 258


>gi|291295897|ref|YP_003507295.1| DNA methylase N-4/N-6 domain-containing protein [Meiothermus ruber
           DSM 1279]
 gi|290470856|gb|ADD28275.1| DNA methylase N-4/N-6 domain protein [Meiothermus ruber DSM 1279]
          Length = 286

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 73/284 (25%), Positives = 122/284 (42%), Gaps = 50/284 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNL--------------------QLNGQLYRPD 61
           +I++   +  +  LP  S  LI+ DPP+N                        G+ YR +
Sbjct: 3   RIVQAECLDYIRTLPEASFPLIYLDPPFNTRKTQQRRRIRAVADEQGSRRGFGGKRYRTE 62

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
                   D +D F        F R  L    R+L PNG+L+V   Y  +  +  +L  +
Sbjct: 63  ALEAPVYPDRYDDF------VEFLRPRLEQAYRLLTPNGSLFVHLDYREVHYVKVLLDQI 116

Query: 122 --NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA--------- 170
                 +N+I+W           +R+   H+TL+W +  P+   YTFNY+A         
Sbjct: 117 FGRKSFINEIIWAYDYGG--RSKKRWPAKHDTLLWYAKHPQ--KYTFNYEAIDRIPYLAP 172

Query: 171 ----LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
                + A+        W + I   S +      +  +PTQKP  LL RI+   + PG++
Sbjct: 173 KMAGPEKASRGKTPTDVWWMTIVPTSSK-----EKTGYPTQKPLRLLERIVRVHSNPGEV 227

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
           +LD F GSGT+G  A +  R F+ ++   D + +  +R+A+ +P
Sbjct: 228 VLDFFAGSGTTGEAAARNGRGFLLVDQSPDAVAVMRRRLAAFEP 271


>gi|171321986|ref|ZP_02910869.1| DNA methylase N-4/N-6 domain protein [Burkholderia ambifaria MEX-5]
 gi|171092716|gb|EDT38001.1| DNA methylase N-4/N-6 domain protein [Burkholderia ambifaria MEX-5]
          Length = 283

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 68/259 (26%), Positives = 119/259 (45%), Gaps = 27/259 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++   + ++   +LP  S+DLI ADPPY L  +        S               + +
Sbjct: 34  ELHNRDFMTEAARLPDASIDLIVADPPYGLGKDYGNDSDKRSG--------------DVF 79

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+TR WL      LKP+G++++  ++     I + L+     ++N+I+W +  P     
Sbjct: 80  LAWTREWLELAIPKLKPSGSMYIFCTWQYAPEIFSFLK-TKLTMVNEIIWDRRVPSMGGT 138

Query: 142 GRRFQNAHETLIWASPSPKAK------GYTFNYDALKAANEDVQMRSDWL------IPIC 189
            RRF + H+ + + + S             ++ D  KA +  +   S WL        + 
Sbjct: 139 TRRFTSVHDNIGFFAVSKAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVW 198

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           S S   R       HPTQKP  ++ R++++S  PG  +LDPF GSGT+     +  R F+
Sbjct: 199 SVSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFV 258

Query: 250 GIEMKQDYIDIATKRIASV 268
           G E+ + Y  IA +R+ ++
Sbjct: 259 GYEINESYCAIAHERVNAL 277


>gi|167621342|ref|ZP_02389973.1| DNA modification methylase RsrI [Burkholderia thailandensis Bt4]
 gi|257141965|ref|ZP_05590227.1| DNA modification methylase RsrI [Burkholderia thailandensis E264]
          Length = 285

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 72/262 (27%), Positives = 120/262 (45%), Gaps = 33/262 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++   + +     LP  S+DLI ADPPY L  +        S               + +
Sbjct: 33  ELHNRDFLHEAASLPDASIDLIVADPPYGLGKDYGNDSDKRSG--------------DEH 78

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+TR WL      LK  G+++V  ++     I + L+     ++N+I+W +  P     
Sbjct: 79  LAWTREWLELAIPKLKSTGSMYVFCTWQYAPEIFSFLK-TRLTMINEIIWDRRVPSMGGT 137

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR---------SDWL------I 186
            RRF + H+ + + +    +KGY F+ D ++   +    +         S WL       
Sbjct: 138 TRRFTSVHDNIGFFA---VSKGYYFDLDPVRIPYDADTKKARSRKLFEGSKWLELGYNPK 194

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            + S S   R       HPTQKP  ++ R++++S  PG  +LDPF GSGT+     + RR
Sbjct: 195 DVWSVSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQRR 254

Query: 247 SFIGIEMKQDYIDIATKRIASV 268
            F+G E+ + Y  IA +R+AS+
Sbjct: 255 DFVGYEINESYCAIARERVASL 276


>gi|167577250|ref|ZP_02370124.1| DNA modification methylase RsrI [Burkholderia thailandensis TXDOH]
          Length = 285

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 72/262 (27%), Positives = 120/262 (45%), Gaps = 33/262 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++   + +     LP  S+DLI ADPPY L  +        S               + +
Sbjct: 33  ELHNRDFLHEAASLPDASIDLIVADPPYGLGKDYGNDSDKRSG--------------DEH 78

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+TR WL      LK  G+++V  ++     I + L+     ++N+I+W +  P     
Sbjct: 79  LAWTREWLELAIPKLKSTGSMYVFCTWQYAPEIFSFLK-TRLTMINEIIWDRRVPSMGGT 137

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR---------SDWL------I 186
            RRF + H+ + + +    +KGY F+ D ++   +    +         S WL       
Sbjct: 138 TRRFTSVHDNIGFFA---VSKGYYFDLDPVRIPYDADTKKARSRKLFEGSKWLELGYNPK 194

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            + S S   R       HPTQKP  ++ R++++S  PG  +LDPF GSGT+     + RR
Sbjct: 195 DVWSVSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQRR 254

Query: 247 SFIGIEMKQDYIDIATKRIASV 268
            F+G E+ + Y  IA +R+AS+
Sbjct: 255 DFVGYEINESYCAIARERVASL 276


>gi|186684880|ref|YP_001868076.1| DNA methylase N-4/N-6 domain-containing protein [Nostoc punctiforme
           PCC 73102]
 gi|186467332|gb|ACC83133.1| DNA methylase N-4/N-6 domain protein [Nostoc punctiforme PCC 73102]
          Length = 369

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 72/265 (27%), Positives = 120/265 (45%), Gaps = 39/265 (14%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+I+  +S+ +L  LP + VDL+ + PPYNL                    ++   + E 
Sbjct: 11  DQILLEDSLQLLRNLPDQCVDLVVSSPPYNLGK-----------------EYESRQALEI 53

Query: 81  YDAFTRAWLLACRRVLKPNGTL-WVIGSYHNI-------FRIGTMLQNLNFWILNDIVWR 132
           Y     A LL C R+LK  G+L W +G++ +         R   +L++      N I+W 
Sbjct: 54  YLKEQTAVLLECSRILKNTGSLFWQVGAFSDRGMLIPLDIRFFPILESCRLIPRNRIIWA 113

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAK----------GYTFNYDALKAANEDVQMRS 182
           + + +     ++F   HET++W + S   K           Y            ++    
Sbjct: 114 RQHGL--HAQKKFSCRHETILWFTKSDNYKFNLDPIRVPQKYQNKKHYRGNRKGELSCNP 171

Query: 183 DWLIP--ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           +   P  I        N + + +HP Q PE L++RI++++T   DI+LDPF GSGT   V
Sbjct: 172 EGKNPGDIWLFRNVKHNHEEQTIHPCQFPEDLVTRIILATTNKNDIVLDPFMGSGTVAVV 231

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRI 265
           A+   R FIG E++  Y  +A +R+
Sbjct: 232 ARDSERHFIGSEIEPKYYQVALRRL 256


>gi|193069715|ref|ZP_03050666.1| DNA methylase [Escherichia coli E110019]
 gi|192956917|gb|EDV87369.1| DNA methylase [Escherichia coli E110019]
          Length = 261

 Score =  172 bits (437), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 64/256 (25%), Positives = 108/256 (42%), Gaps = 32/256 (12%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS-----LVDAVTDSWDKFSSFE 79
           +GN++ +L  +  +S+D +  DPPY+     +  R +       L       +D F+   
Sbjct: 28  RGNALEILPLIEPESIDALITDPPYSSGATHKAGRTNQGSHAKYLNGENLHRFDGFAGEN 87

Query: 80  A----YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
                +  +T+ W+    R ++P G   V   +  +  +    Q   F     I W K  
Sbjct: 88  MDARSWAYWTQLWMAQAHRAVRPGGYALVFTDWRQLPALTDAFQASGFTWRGIIAWNKGR 147

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
                    F++  E ++W S     K  +  +D                 P+ S     
Sbjct: 148 GSRTPHTGYFRHQCEYIVWGSKGHLDKSPSGPFDGCMT------------FPVIS----- 190

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                +K+HPT KPE L++ ++  +   G  +LDPF GSGT+G  A K  R FIGIE   
Sbjct: 191 ----SKKMHPTGKPEELMAELVR-TVNSGGTVLDPFMGSGTTGVAALKAGRKFIGIETSD 245

Query: 256 DYIDIATKRIA-SVQP 270
            Y D+AT+R+  +++P
Sbjct: 246 HYFDVATQRLKTAIEP 261


>gi|17231903|ref|NP_488451.1| putative methyltransferase [Nostoc sp. PCC 7120]
 gi|17133547|dbj|BAB76110.1| DNA-methyltransferase [Nostoc sp. PCC 7120]
          Length = 295

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 69/276 (25%), Positives = 125/276 (45%), Gaps = 29/276 (10%)

Query: 14  NSIFEWKDKIIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
            +  +    +  G+++++L   +P++SVDLIF DPPYN+                 ++  
Sbjct: 3   ETYEDEAHILFHGDALNILSSNIPSESVDLIFIDPPYNIGK-------------HFSNFH 49

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           DK+ S E Y  +   WL  C RVLK +GT++V+ S   +      L+     IL+ IVW 
Sbjct: 50  DKWESEEEYANWAYKWLDECIRVLKSHGTIYVMTSTQAMPYFDIYLRQ-KLTILSRIVWH 108

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI------ 186
             +       + F + +E ++    +     +      ++A     +   D+        
Sbjct: 109 YDSSGVQAT-KYFGSMYEPILHCVKNKSNYIFNSEEIKIEAKTGAQRKLIDYRKAVPAPY 167

Query: 187 -------PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
                   +   S         + HP+QKPE+L+ RI++SS+    ++LDPF G+ T  +
Sbjct: 168 NTEKVPGNVWYFSRVRYRMPEYENHPSQKPESLIERIILSSSNEDSLVLDPFAGTFTVAS 227

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           VAK+L R  I IE +++Y+ I  +R+   +     +
Sbjct: 228 VAKRLGRKSISIESQEEYLKIGLRRVLGWEEYKGEQ 263


>gi|323170409|gb|EFZ56062.1| DNA methylase family protein [Escherichia coli LT-68]
          Length = 263

 Score =  172 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 63/256 (24%), Positives = 107/256 (41%), Gaps = 32/256 (12%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS-----LVDAVTDSWDKFSSFE 79
           +GN++ +L  +  +S+D +  DPPY+     +  R +       L       +D F+   
Sbjct: 30  RGNALEILPLIEPESIDALITDPPYSSGATHKAGRTNQGSHAKYLNGENLHRFDGFAGEN 89

Query: 80  A----YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
                +  +T+ W+    R ++P G   V   +  +  +    Q   F     I W K  
Sbjct: 90  MDARSWAYWTQLWMAQAHRAVRPGGYALVFTDWRQLPALTDAFQASGFTWRGIIAWNKGR 149

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
                    F++  E ++W S     K  +  +D                 P+       
Sbjct: 150 GSRTPHTGYFRHQCEYIVWGSKGHLDKSPSGPFDGCMT------------FPVI------ 191

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                +K+HPT KPE L++ ++  +   G  +LDPF GSGT+G  A K  R FIGIE   
Sbjct: 192 ---PSKKMHPTGKPEELMAELVR-TVNSGGTVLDPFMGSGTTGVAALKAGRKFIGIETSD 247

Query: 256 DYIDIATKRIA-SVQP 270
            Y D+AT+R+  +++P
Sbjct: 248 HYFDVATQRLKTAIEP 263


>gi|218440461|ref|YP_002378790.1| methyltransferase [Cyanothece sp. PCC 7424]
 gi|218173189|gb|ACK71922.1| Site-specific DNA-methyltransferase (adenine-specific) [Cyanothece
           sp. PCC 7424]
          Length = 283

 Score =  172 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 84/276 (30%), Positives = 136/276 (49%), Gaps = 33/276 (11%)

Query: 21  DKIIKGNSISVL-EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
             I  G++++VL E++ ++S++LIF DPPYN+                  D +DK+ S E
Sbjct: 10  HLIFHGDALTVLLEEIDSESIELIFLDPPYNIGKR-------------FGDFYDKWLSDE 56

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y  +   WL  C RVLKPNGTL+V+ S  ++      L+     +   I    S+ +  
Sbjct: 57  DYVEWAYKWLDECIRVLKPNGTLYVMTSTQSMPYFDIYLRKKLTILSRIIWHYDSSGVQA 116

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR----SDWLIPICSGSERL 195
              + F + +E ++        K Y FN +A+K   +    R        IP    + ++
Sbjct: 117 S--KYFGSMYEPILHCVKDK--KNYIFNSEAIKIEAKTGAKRKLIDYRKTIPTPYNTNKI 172

Query: 196 -----------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
                         +  + HP+QKPE+LL RI+++S+   D+ILDPF G+ T+ AVAK+L
Sbjct: 173 PGNVWYFSRVRYRMEEYENHPSQKPESLLERIILASSNEKDLILDPFAGTFTAAAVAKRL 232

Query: 245 RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
           RR+ I IE +++Y+ I  +RI   Q     +L  L 
Sbjct: 233 RRNSISIESQEEYLKIGLRRILDWQEYKGEKLLPLQ 268


>gi|167820636|ref|ZP_02452316.1| DNA modification methylase RsrI [Burkholderia pseudomallei 91]
          Length = 281

 Score =  172 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 69/261 (26%), Positives = 118/261 (45%), Gaps = 32/261 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++   + +     LP  S+DLI ADPPY L  +        S               + +
Sbjct: 30  ELHNRDFLHEAASLPDASIDLIVADPPYGLGKDYGNDSDKRSG--------------DEH 75

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+TR WL      LK  G+++V  ++     I + L+     ++N+I+W +  P     
Sbjct: 76  LAWTREWLELAVPKLKSTGSMYVFCTWQYAPEIFSFLK-TKLTMVNEIIWDRRVPSMGGT 134

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE--------------DVQMRSDWLIP 187
            RRF + H+ + + +    +KGY F+ D ++   +                 +   +   
Sbjct: 135 TRRFTSVHDNIGFFA---VSKGYYFDLDPVRIPYDADTKKARSRKLFEGSKWLELGYNQD 191

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           + S S   R       HPTQKP  ++ R++++S  PG  +LDPF GSGT+     + RR 
Sbjct: 192 VWSVSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQRRG 251

Query: 248 FIGIEMKQDYIDIATKRIASV 268
           F+G E+ + Y  IA +R+AS+
Sbjct: 252 FVGYEINESYCAIARERVASL 272


>gi|41179391|ref|NP_958699.1| adenine DNA methyltransferase [Bordetella phage BPP-1]
 gi|40950130|gb|AAR97696.1| adenine DNA methyltransferase [Bordetella phage BPP-1]
          Length = 251

 Score =  172 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 64/256 (25%), Positives = 104/256 (40%), Gaps = 29/256 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDAVTDSW-----D 73
           ++I+G ++  L  +P++SVD +  DPPY       + +   PD     + +         
Sbjct: 7   QLIQGEALPALIAMPSESVDAVITDPPYSSGGFSRDDKAKDPDAKYTQSGSQGRYPTFSG 66

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                 +Y  +   W+  C RVLKP G       +  +  +   +Q    +    I W K
Sbjct: 67  DSRDQRSYLTWCSLWIAECVRVLKPGGYFMAFTDWRQLPLMSDAVQAGGVFWRGLIAWDK 126

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
                      F++  E ++W +                      Q+  D       G  
Sbjct: 127 GRGARAPHKGYFRHQCEYVVWGTKGAAV-----------------QLEHDGPFD---GCI 166

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           +   +  +K H T KP AL+ R LV    PG ++LDPF GSGT+G  A    R FIGIE 
Sbjct: 167 QAVVRRDDKHHLTGKPTALM-RELVRPVMPGGVVLDPFAGSGTTGVAAVLSGRRFIGIER 225

Query: 254 KQDYIDIATKRIASVQ 269
           +  Y +I+  R+A+ +
Sbjct: 226 ETAYAEISRTRLAAAE 241


>gi|219849124|ref|YP_002463557.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
           aggregans DSM 9485]
 gi|219543383|gb|ACL25121.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aggregans DSM
           9485]
          Length = 304

 Score =  172 bits (436), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 83/314 (26%), Positives = 133/314 (42%), Gaps = 46/314 (14%)

Query: 1   MSQKNSLAINENQNSIFEWKD--KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
           M   N   I+ N  ++F      +I  G++I+ L  L  +SVD+IFADPPYN++      
Sbjct: 6   MFDSNESQIDPNTPTLFYSHPHGEIWVGDAIAWLRSLETESVDMIFADPPYNIKKA---- 61

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
                        WD F S E Y  ++  W+    RVLKP+GTL++ G    I  +    
Sbjct: 62  ------------EWDTFESQEEYVEWSLLWIREAARVLKPSGTLYICGFSEIIADLKLPA 109

Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK-----------AKGYTFN 167
             L F     ++W   N      G  +  +HE+++    S                +T  
Sbjct: 110 SRL-FKGCRWLIWHYKNKAN--LGSDWGRSHESILHFRKSKNFTFNIDDVRIPYGNHTLK 166

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL--------------HPTQKPEALL 213
           Y     A      + +              K  + +              HPTQKPE LL
Sbjct: 167 YPEHPQAETSQYGKGNGRKNTIWQPHPRGAKPRDVIEIPTTCNGMHEKTPHPTQKPEELL 226

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
            +++++S+  GD+I+DPF GSGT+  VA++LRR++ G ++  +Y   A +RI  V+    
Sbjct: 227 RKLVLASSNVGDLIVDPFLGSGTTAVVAEQLRRNWKGCDISLEYCRWAVRRIELVEDWPI 286

Query: 274 IELTVLTGKRTEPR 287
            +      +  E R
Sbjct: 287 EKWIQYDFENAERR 300


>gi|269926576|ref|YP_003323199.1| DNA methylase N-4/N-6 domain protein [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269790236|gb|ACZ42377.1| DNA methylase N-4/N-6 domain protein [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 276

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 118/292 (40%), Gaps = 45/292 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            +  G+++S L+KL + SV L++ADPP+         R +   VD      D +   + Y
Sbjct: 3   TVYLGDNLSFLKKLASGSVTLVYADPPF---------RTNRIRVDENGKYNDVWQGIDHY 53

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    L    R+L  +GT ++     ++  +  ++ ++                    
Sbjct: 54  LEWLAPRLCEIHRILSEDGTFYLHLDRRSVHYVRLLMDDIFGANNFQNEIIWHYTGGGRG 113

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR-------------------- 181
            R F + H+ ++        + Y FN DA++                             
Sbjct: 114 SRHFPHKHDNILVYHK---TRKYKFNVDAVREPYAKTSGYARSGIRARSGKFYSPHPLGK 170

Query: 182 ---SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
                W IPI +             +P+QKPE LL RI+V+S+  GDI+LDPF GSGT+ 
Sbjct: 171 VLDDVWFIPIVNPL-----SPERTGYPSQKPEELLRRIIVASSDKGDIVLDPFCGSGTTL 225

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAF 290
             A KL R +IG++   + I I  +R+ ++          L  K  EP + +
Sbjct: 226 VAAHKLERQWIGMDSSPEAISICIERLKAI-----GASVQLETKPFEPPLEY 272


>gi|134298731|ref|YP_001112227.1| DNA methylase N-4/N-6 domain-containing protein [Desulfotomaculum
           reducens MI-1]
 gi|134051431|gb|ABO49402.1| DNA methylase N-4/N-6 domain protein [Desulfotomaculum reducens
           MI-1]
          Length = 299

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 122/289 (42%), Gaps = 61/289 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II GN++ VL+ +P  ++  +   PPY    +  +     +  +            + Y
Sbjct: 19  TIIHGNALEVLKLIPDNTIQCVVTSPPYWGLRDYGIPNQIGAENN-----------LDDY 67

Query: 82  DAFTRAWLLACRRVLKPNGTLW-VIGSYHN------------------------------ 110
                +     RRVLK +GTLW  IG  +                               
Sbjct: 68  INNLASIFREVRRVLKKDGTLWLNIGDSYTSGNRKYRAPDKKTDTKTNVRAMNYRPDTPE 127

Query: 111 ----------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
                      +R+   LQ   +++ +DI+W K N MP     R   +HE +   S    
Sbjct: 128 GLKPKDLIGVPWRVAFALQVDGWFLRSDIIWNKPNCMPESVKDRPTKSHEYIFLLSK--- 184

Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
           +K Y ++Y ++K  +E  ++R+   +        +  +  +  H    P  L+   + + 
Sbjct: 185 SKHYYYDYQSIKEPSETGELRNKRTV------WNVNTQGFKDAHFATFPPELIVPCIKAG 238

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           +K  D +LDPFFGSGT G V  +L R +IGIE+ Q+YI++AT+RI + +
Sbjct: 239 SKVNDFVLDPFFGSGTVGVVCNELSRRYIGIEISQEYIEMATQRIINTE 287


>gi|296123807|ref|YP_003631585.1| DNA methylase N-4/N-6 domain protein [Planctomyces limnophilus DSM
           3776]
 gi|296016147|gb|ADG69386.1| DNA methylase N-4/N-6 domain protein [Planctomyces limnophilus DSM
           3776]
          Length = 306

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/312 (23%), Positives = 124/312 (39%), Gaps = 64/312 (20%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            ++++  + I+ L + PA SVDL FADPP+N+                  D +      +
Sbjct: 1   MNQLLLEDCITGLAQQPAGSVDLAFADPPFNIGYTY--------------DVYADSKESQ 46

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y A+   W+ A  R L+P+GT W+         +    Q + F   + +VW  +  +  
Sbjct: 47  QYLAWCEEWIAAVYRALRPDGTFWLAIGDEYAAELKVAAQKIGFHTRSWVVWYYTFGVNC 106

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFN---------------YDALKAANEDVQMRSDW 184
               +F  +H  + +       + +TFN               Y   +A  +       W
Sbjct: 107 --KFKFTRSHAHIFYFVKD--REKFTFNSEDPANRIPSARQLVYADKRANPKGRLPDDTW 162

Query: 185 LIPIC-----------------------SGSERLRN--------KDGEKLHPTQKPEALL 213
           +IP                         + +E            K+ E  H  Q PE LL
Sbjct: 163 IIPPTVEEMARQTSATWVLRPQDLADRFTPTEDTWYFPRVAGTFKEREGFHGCQMPEQLL 222

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
            RI+   + PG+++LDPF GS T+ AVAKKL R+++G ++ + Y+    KR+ S++P   
Sbjct: 223 GRIIRMCSNPGELVLDPFSGSATTLAVAKKLGRNYLGFDISEQYVTHGLKRLESIEPGDP 282

Query: 274 IELTVLTGKRTE 285
           ++          
Sbjct: 283 LDGAAEPTMSAP 294


>gi|308751880|gb|ADO45363.1| DNA methylase N-4/N-6 domain protein [Hydrogenobacter thermophilus
           TK-6]
          Length = 275

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 115/289 (39%), Gaps = 44/289 (15%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
            ++  +   E + S  E+ ++I   +S   +E+LP  SV L+   PPYN+          
Sbjct: 6   PKEKQVKYFEQKIS-QEYLNRIYCKSS-ESMEELPDNSVHLVVTSPPYNVGK-------- 55

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW----VIGSYHNIFRIGTM 117
                     +DK  SF+ Y  F +       RVL P G +      +G    I     +
Sbjct: 56  ---------EYDKDLSFKEYLEFLKRVWKEVYRVLVPGGRVCINVANLGRKPYIPLHAFI 106

Query: 118 LQN---LNFWILNDIVWRKSNPMPNFRGRR---------FQNAHETLIWASPSPKAKGYT 165
           +Q+   + F +  +I+W K                     ++ HE ++  S     +G  
Sbjct: 107 IQDMLDIGFLMRGEIIWNKDKSASPSTAWGSWLSAQNPTLRDIHEYILVFSKDTFKRGNP 166

Query: 166 FNYDALKAANED-VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
               +    +E     +S W+ P  S          +  HP   P  L  R +   T  G
Sbjct: 167 LKRQSTITRDEFLEFTKSVWVFPAVSAK--------KIGHPAPFPIELPYRCIQLYTFKG 218

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           +++LDPF GSG +   A K  R F+G E+ QDY+ +A +RI  V   GN
Sbjct: 219 EVVLDPFMGSGQTAIAAIKSGRYFVGYEINQDYVKLAERRIRQVLSEGN 267


>gi|53716177|ref|YP_106283.1| N-6 adenine-specific DNA methylase [Burkholderia mallei ATCC 23344]
 gi|53722718|ref|YP_111703.1| modification methylase [Burkholderia pseudomallei K96243]
 gi|67640710|ref|ZP_00439507.1| DNA modification methylase RsrI [Burkholderia mallei GB8 horse 4]
 gi|121596899|ref|YP_991244.1| N-6 adenine-specific DNA methylase [Burkholderia mallei SAVP1]
 gi|124382898|ref|YP_001025656.1| N-6 adenine-specific DNA methylase [Burkholderia mallei NCTC 10229]
 gi|126445073|ref|YP_001063438.1| DNA modification methylase RsrI [Burkholderia pseudomallei 668]
 gi|126446610|ref|YP_001077731.1| DNA modification methylase RsrI [Burkholderia mallei NCTC 10247]
 gi|126458257|ref|YP_001076339.1| DNA modification methylase RsrI [Burkholderia pseudomallei 1106a]
 gi|134278482|ref|ZP_01765196.1| DNA modification methylase RsrI [Burkholderia pseudomallei 305]
 gi|166999488|ref|ZP_02265327.1| DNA modification methylase RsrI [Burkholderia mallei PRL-20]
 gi|167828995|ref|ZP_02460466.1| DNA modification methylase RsrI [Burkholderia pseudomallei 9]
 gi|167850471|ref|ZP_02475979.1| DNA modification methylase RsrI [Burkholderia pseudomallei B7210]
 gi|167899065|ref|ZP_02486466.1| DNA modification methylase RsrI [Burkholderia pseudomallei 7894]
 gi|167915749|ref|ZP_02502840.1| DNA modification methylase RsrI [Burkholderia pseudomallei 112]
 gi|167923589|ref|ZP_02510680.1| DNA modification methylase RsrI [Burkholderia pseudomallei BCC215]
 gi|217422579|ref|ZP_03454082.1| DNA modification methylase RsrI [Burkholderia pseudomallei 576]
 gi|226195794|ref|ZP_03791381.1| DNA modification methylase RsrI [Burkholderia pseudomallei Pakistan
           9]
 gi|237508464|ref|ZP_04521179.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei
           MSHR346]
 gi|242312128|ref|ZP_04811145.1| DNA modification methylase RsrI [Burkholderia pseudomallei 1106b]
 gi|254176235|ref|ZP_04882893.1| DNA modification methylase RsrI [Burkholderia mallei ATCC 10399]
 gi|254186233|ref|ZP_04892751.1| DNA modification methylase RsrI [Burkholderia pseudomallei Pasteur
           52237]
 gi|254193634|ref|ZP_04900066.1| DNA modification methylase RsrI [Burkholderia pseudomallei S13]
 gi|254201165|ref|ZP_04907530.1| DNA modification methylase RsrI [Burkholderia mallei FMH]
 gi|254205137|ref|ZP_04911490.1| DNA modification methylase RsrI [Burkholderia mallei JHU]
 gi|254265092|ref|ZP_04955957.1| DNA modification methylase RsrI [Burkholderia pseudomallei 1710a]
 gi|254301281|ref|ZP_04968725.1| DNA modification methylase RsrI [Burkholderia pseudomallei 406e]
 gi|254359264|ref|ZP_04975536.1| DNA modification methylase RsrI [Burkholderia mallei 2002721280]
 gi|52213132|emb|CAH39171.1| putative modification methylase [Burkholderia pseudomallei K96243]
 gi|52422147|gb|AAU45717.1| N-6 adenine-specific DNA methylase [Burkholderia mallei ATCC 23344]
 gi|121224697|gb|ABM48228.1| N-6 adenine-specific DNA methylase [Burkholderia mallei SAVP1]
 gi|126224564|gb|ABN88069.1| DNA modification methylase RsrI [Burkholderia pseudomallei 668]
 gi|126232025|gb|ABN95438.1| DNA modification methylase RsrI [Burkholderia pseudomallei 1106a]
 gi|126239464|gb|ABO02576.1| DNA modification methylase RsrI [Burkholderia mallei NCTC 10247]
 gi|134250266|gb|EBA50346.1| DNA modification methylase RsrI [Burkholderia pseudomallei 305]
 gi|147748777|gb|EDK55852.1| DNA modification methylase RsrI [Burkholderia mallei FMH]
 gi|147754723|gb|EDK61787.1| DNA modification methylase RsrI [Burkholderia mallei JHU]
 gi|148028451|gb|EDK86411.1| DNA modification methylase RsrI [Burkholderia mallei 2002721280]
 gi|157811304|gb|EDO88474.1| DNA modification methylase RsrI [Burkholderia pseudomallei 406e]
 gi|157933919|gb|EDO89589.1| DNA modification methylase RsrI [Burkholderia pseudomallei Pasteur
           52237]
 gi|160697277|gb|EDP87247.1| DNA modification methylase RsrI [Burkholderia mallei ATCC 10399]
 gi|169650385|gb|EDS83078.1| DNA modification methylase RsrI [Burkholderia pseudomallei S13]
 gi|217394810|gb|EEC34829.1| DNA modification methylase RsrI [Burkholderia pseudomallei 576]
 gi|225932279|gb|EEH28279.1| DNA modification methylase RsrI [Burkholderia pseudomallei Pakistan
           9]
 gi|235000669|gb|EEP50093.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei
           MSHR346]
 gi|238521481|gb|EEP84932.1| DNA modification methylase RsrI [Burkholderia mallei GB8 horse 4]
 gi|242135367|gb|EES21770.1| DNA modification methylase RsrI [Burkholderia pseudomallei 1106b]
 gi|243064538|gb|EES46724.1| DNA modification methylase RsrI [Burkholderia mallei PRL-20]
 gi|254216094|gb|EET05479.1| DNA modification methylase RsrI [Burkholderia pseudomallei 1710a]
 gi|261827031|gb|ABM99404.2| DNA modification methylase RsrI [Burkholderia mallei NCTC 10229]
          Length = 282

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/262 (27%), Positives = 120/262 (45%), Gaps = 33/262 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++   + +     LP  S+DLI ADPPY L  +        S               + +
Sbjct: 30  ELHNRDFLHEAASLPDASIDLIVADPPYGLGKDYGNDSDKRSG--------------DEH 75

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+TR WL      LK  G+++V  ++     I + L+     ++N+I+W +  P     
Sbjct: 76  LAWTREWLELAVPKLKSTGSMYVFCTWQYAPEIFSFLK-TKLTMVNEIIWDRRVPSMGGT 134

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR---------SDWL------I 186
            RRF + H+ + + +    +KGY F+ D ++   +    +         S WL       
Sbjct: 135 TRRFTSVHDNIGFFA---VSKGYYFDLDPVRIPYDADTKKARSRKLFEGSKWLELGYNPK 191

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            + S S   R       HPTQKP  ++ R++++S  PG  +LDPF GSGT+     + RR
Sbjct: 192 DVWSVSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQRR 251

Query: 247 SFIGIEMKQDYIDIATKRIASV 268
            F+G E+ + Y  IA +R+AS+
Sbjct: 252 GFVGYEINESYCAIARERVASL 273


>gi|320104814|ref|YP_004180405.1| DNA methylase N-4/N-6 domain-containing protein [Isosphaera pallida
           ATCC 43644]
 gi|319752096|gb|ADV63856.1| DNA methylase N-4/N-6 domain protein [Isosphaera pallida ATCC
           43644]
          Length = 310

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 119/297 (40%), Gaps = 35/297 (11%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYN--------------------LQLNGQLYRPDH 62
           +  G+++ VL KLP +  DLI+ DPP+N                    +   G  YR   
Sbjct: 10  VYFGDNLDVLRKLPDQLADLIYIDPPFNTGKVQSRTQIRTIRSQEGDRVGFQGNRYRTIK 69

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL- 121
                 +D +D     + + +F    L+   R+LK NGT +    Y  +     ML  + 
Sbjct: 70  VGTTGYSDRFD-----DGFLSFLEPRLIEAYRILKDNGTFYFHIDYREVHYCKLMLDQIF 124

Query: 122 -NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN------YDALKAA 174
                LN+++W            ++   H+ ++    +P    + +       Y A    
Sbjct: 125 GRECFLNEVIWAYDYGARTKL--KWPPKHDNILVYVKNPDNYVFNYEDIDRIPYMAPGLV 182

Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
                 +          +    N   +  +PTQKP  +L RI+ +S+  G I+LD F GS
Sbjct: 183 GPKKAEQGKPPTDTWWHTIVPTNGSEKTGYPTQKPLGILRRIVRASSPVGGIVLDFFAGS 242

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFN 291
           GT+GA   +L R FI ++   D + + +KR   +  +  ++   L  + + P   F+
Sbjct: 243 GTTGAACLELNRRFILVDNSVDALKVMSKRFDGISSVNWVDFDPLPYQTSFPATRFS 299


>gi|296159696|ref|ZP_06842519.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. Ch1-1]
 gi|295890140|gb|EFG69935.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. Ch1-1]
          Length = 301

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 68/257 (26%), Positives = 120/257 (46%), Gaps = 27/257 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +++  + +S +  +P  S+DLI  DPPY L   G+ Y  D               + + +
Sbjct: 38  QLLNRDFLSDVANIPDGSIDLILCDPPYGL---GKDYGNDS-----------DMRTGDDF 83

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+TR WL      LKP+G+L++  ++     I + L+     ++N+I+W +  P     
Sbjct: 84  LAWTRGWLELAIPKLKPSGSLYIFCTWQYAPEIFSFLK-TKLTMINEIIWDRRVPSMGGT 142

Query: 142 GRRFQNAHETLIWASPSPKAK------GYTFNYDALKAANEDVQMRSDWL------IPIC 189
            RRF + H+ + + + S             ++    KA +  +   S WL        + 
Sbjct: 143 VRRFTSVHDNIGFFAVSKDYFFDLDPVRIPYDAATKKARSRKLFEGSKWLEVGYNPKDVW 202

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           S S   R       HPTQKP  ++ R++++S   G  +LDPF GSGT+     + +R F+
Sbjct: 203 SVSRLHRQHAERVAHPTQKPLEIVERMVLASCPKGGRVLDPFMGSGTTAVACARQQREFV 262

Query: 250 GIEMKQDYIDIATKRIA 266
           G E+ + Y  IA +R++
Sbjct: 263 GYEINESYCAIARERVS 279


>gi|127465|sp|P23192|MTM2_MORBO RecName: Full=Modification methylase MboII; Short=M.MboII; AltName:
           Full=Adenine-specific methyltransferase MboII; AltName:
           Full=DNA MTase MboIIA
 gi|44181|emb|CAA40297.1| methyltransferase MboII [Moraxella bovis]
          Length = 260

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 76/266 (28%), Positives = 112/266 (42%), Gaps = 45/266 (16%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI + N    L+++  KSV L   DPPYNL                    WD F S   
Sbjct: 5   NKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKA----------------DWDSFDSHNE 48

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           +  FT  W+      L  +G+L++  +  N   I   L +      N I W K + M   
Sbjct: 49  FLPFTYRWIDKVLDKLDKDGSLYIFNTPFNCAFICQYLVSKGMIFQNWITWDKRDGMG-S 107

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ--------------------- 179
             R F    ET+++ S    +K +TFNYD ++   E                        
Sbjct: 108 AKRGFSTGQETILFFSK---SKNHTFNYDEVRVPYESTDRIKHASEKGILKNGKRWFPNP 164

Query: 180 ----MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
                   W        E++  K  +  H T KP  L+ RI+ +S+ P D++LD F GSG
Sbjct: 165 NGRLCGEVWHFSSQRHKEKVNGKTVKLTHITPKPRDLIERIIRASSNPNDLVLDCFMGSG 224

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIA 261
           T+  VAKKL R+FIG +M  +Y++ A
Sbjct: 225 TTAIVAKKLGRNFIGCDMNAEYVNQA 250


>gi|194439356|ref|ZP_03071434.1| DNA methylase [Escherichia coli 101-1]
 gi|194421718|gb|EDX37727.1| DNA methylase [Escherichia coli 101-1]
          Length = 268

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 60/253 (23%), Positives = 102/253 (40%), Gaps = 31/253 (12%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS-----LVDAVTDSWDKFSSFE 79
           +GN++ +L  +  +S+D +  DPPY+     +  R +       L       +D F+   
Sbjct: 30  RGNALEILPLIEPESIDALITDPPYSSGATHKAGRTNQGSHAKYLNGENLHRFDGFAGEN 89

Query: 80  A----YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
                +  +T+ W+    R ++P G   V   +  +  +    Q   F     I W K  
Sbjct: 90  MDARSWAYWTQLWMAQAHRAVRPGGYALVFTDWRQLPALTDAFQASGFTWRGIIAWNKGR 149

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
                    F++  E ++W S     K  +  +D                 P+       
Sbjct: 150 GSRTPHTGYFRHQCEYIVWGSKGHLDKSPSGPFDGCMT------------FPVI------ 191

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                +K+HPT KPE L++ ++  +   G  +LDPF GSGT+G  A K  R FIGIE   
Sbjct: 192 ---PSKKMHPTGKPEELMAELVR-TVNSGGTVLDPFMGSGTTGVAALKAGRKFIGIETSD 247

Query: 256 DYIDIATKRIASV 268
            Y ++A +R+   
Sbjct: 248 HYFEVAAQRLRGT 260


>gi|189036164|gb|ACD75432.1| AMDV4_3 [uncultured virus]
          Length = 243

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 62/249 (24%), Positives = 111/249 (44%), Gaps = 33/249 (13%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
           +G+ + ++++L  +SVD +  DPPY +            +V+      DK          
Sbjct: 6   QGDCLELMKELKDESVDCVITDPPYGIDFLSHWTNNHKKIVNDSDIRIDK---------L 56

Query: 85  TRAWLLACRRVLKPNGTLWVI---GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
              +L   +R+LKP+G + +    G       + T+  + +  ++  ++W K     +F 
Sbjct: 57  FAQFLPEFKRILKPHGVVCIFSAGGGKKITTALATLELSKHMHLIQTLIWSKGKTDGSFV 116

Query: 142 G--RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           G   +++ ++ET++  S       +   Y +     +    +                  
Sbjct: 117 GLGWKYRPSYETILIGSKDLNNYAFYPQYSSNVLVYKPYIPQ------------------ 158

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
            +  HPTQKP  L+  +L + TK GD +LDPF GSGT+G   K+L+R+FIG E+  DY  
Sbjct: 159 -KGEHPTQKPIDLMCNLLRNHTKVGDTVLDPFMGSGTTGVACKQLKRNFIGYELDSDYFR 217

Query: 260 IATKRIASV 268
           +A KRI   
Sbjct: 218 MAEKRIEET 226


>gi|329765700|ref|ZP_08257269.1| DNA methylase N-4/N-6 domain-containing protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329137766|gb|EGG42033.1| DNA methylase N-4/N-6 domain-containing protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 258

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 57/249 (22%), Positives = 115/249 (46%), Gaps = 8/249 (3%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   N I  ++ +P   +DLI  DPP+ +          + +   V   +++  + + 
Sbjct: 7   NKIYNMNCIEGMKLIPKNKIDLIITDPPFAINFKA-TKANYNRISSRVMQGYNEIKAVDY 65

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           YD F+  W+    R+LK +G+++V   ++N+  I   L ++ F  +N I+W+    +   
Sbjct: 66  YD-FSYHWMKEAFRILKDSGSMYVFSGWNNLKDILRALDDVGFITVNHIIWKYQFGVVT- 123

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTF--NYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             R+F  +H   ++     K + +     ++    +++   +       +          
Sbjct: 124 -KRKFVTSHYHCLYVCKDDKQRKFFPFSRFEKNSKSDKGRSLHYKDKEDVWEIKREYWT- 181

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            G++  PT+ P  L+ ++L  S++  DI+LDPF GSG    V+K + R  +G E+  +Y 
Sbjct: 182 -GDEKTPTKLPAELIEKLLHYSSEKKDIVLDPFLGSGQVAVVSKYMNRRHLGFEIVPEYY 240

Query: 259 DIATKRIAS 267
             A KR+  
Sbjct: 241 KFAKKRLDK 249


>gi|317012153|gb|ADU82761.1| DNA methylase [Helicobacter pylori Lithuania75]
          Length = 372

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 112/289 (38%), Gaps = 40/289 (13%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
           +      ++  N I  + ++I   +S+  L+KLP   +D++   PPYN  +N    +   
Sbjct: 105 ESYKKEFSKETNEIQSYLNQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGINYNATQ--- 161

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW-----VIGSY-HNIFRIGT 116
                  D W      + Y     +    C RVLK  G +      +   Y      I  
Sbjct: 162 -----DADLW------QEYFNTLFSIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISK 210

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL-IWASPSPKAKGYTFNYDALKAAN 175
              +       +I+W K+N         +   + T   W SP+     Y++ +  +   N
Sbjct: 211 FFIDEGLIWKGEILWEKNN---------YNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKN 261

Query: 176 E--------DVQMRSDWLIPICSGSERLRNKDGEK--LHPTQKPEALLSRILVSSTKPGD 225
                     + +  D       G      +   K   H    PE L+ R L   +   D
Sbjct: 262 NLKKEGDKNSIDITDDEFKKWVYGKWNFAPERNMKQYGHDAMFPEELVKRCLKLFSYQND 321

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
           I+LDPF G+GT+  VAK+L R FIGI++ + Y ++A +R+     L N 
Sbjct: 322 IVLDPFNGAGTTTKVAKQLGRRFIGIDISEKYCEVAKERLKETTNLFNA 370


>gi|320535756|ref|ZP_08035839.1| DNA (cytosine-5-)-methyltransferase [Treponema phagedenis F0421]
 gi|320147387|gb|EFW38920.1| DNA (cytosine-5-)-methyltransferase [Treponema phagedenis F0421]
          Length = 252

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 75/247 (30%), Positives = 121/247 (48%), Gaps = 19/247 (7%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +I G+    ++++P  S+DLI  DPPYNL      Y   +   D   +  +  + ++   
Sbjct: 12  LIHGDCFQKMKEIPDTSIDLILCDPPYNLA----EYSTGNMKFDWRAEINNDVAEWDLIT 67

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
              +  +    R+LKP G +++  SY+ I +   +  N  F     +VW K+NP+PN R 
Sbjct: 68  FDPQKLVEDFTRILKPKGNIFIFTSYNLIGKYHEIF-NPIFDTFQFMVWHKTNPIPNVRK 126

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
             F N+ E ++        KG+T+N+      +  +        PIC G ER++N     
Sbjct: 127 SSFLNSCELIV----CLWNKGHTWNFSTQNQMHNFI------ETPICMGKERIKNPK--- 173

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPTQKP A+L  I+  ++   DI+ DPF G G++G  A  L R F+GIE+ + Y   A 
Sbjct: 174 -HPTQKPLAVLEHIIKIASNENDIVFDPFMGVGSTGHAALNLNRRFLGIEIDKKYFAAAC 232

Query: 263 KRIASVQ 269
            R+   Q
Sbjct: 233 DRLTIFQ 239


>gi|295700770|ref|YP_003608663.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. CCGE1002]
 gi|295439983|gb|ADG19152.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. CCGE1002]
          Length = 304

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 68/257 (26%), Positives = 119/257 (46%), Gaps = 27/257 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +++  + ++ +  +P  S+DLI  DPPY L   G+ Y  D               + E +
Sbjct: 39  QLLNRDFLTDVANIPDGSIDLIVCDPPYGL---GKDYGNDS-----------DMRTGEEF 84

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +TR WL      LKP+G+L++  ++     I + L+     ++N+I+W +  P     
Sbjct: 85  LVWTRGWLELAVPKLKPSGSLYIFCTWQYAPEIFSFLK-TKLVMVNEIIWDRRVPSMGGT 143

Query: 142 GRRFQNAHETLIWASPSPKAK------GYTFNYDALKAANEDVQMRSDWL------IPIC 189
            RRF + H+ + + + S             ++    KA +  +   S WL        + 
Sbjct: 144 TRRFTSVHDNIGFFAVSKDYFFDLDPVRIPYDAVTKKARSRKLFEGSKWLELGYNPKDVW 203

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           S S   R       HPTQKP  ++ R+++SS   G  +LDPF GSGT+     + +R F+
Sbjct: 204 SVSRLHRQHAERVAHPTQKPLEIVERMVLSSCPKGGRVLDPFMGSGTTAVACVRHQREFV 263

Query: 250 GIEMKQDYIDIATKRIA 266
           G E+ + Y  IA +R++
Sbjct: 264 GYEINESYCAIARERVS 280


>gi|78062971|ref|YP_372879.1| DNA methylase N-4/N-6 [Burkholderia sp. 383]
 gi|77970856|gb|ABB12235.1| DNA methylase N-4/N-6 [Burkholderia sp. 383]
          Length = 283

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 68/259 (26%), Positives = 118/259 (45%), Gaps = 27/259 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++   + ++    LP  S+DLI ADPPY L  +        S               + +
Sbjct: 34  ELHNRDFLTHAAHLPDASIDLIVADPPYGLGKDYGNDSDKRSG--------------DDF 79

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+TR WL      LKP+G++++  ++     I + L+     ++N+I+W +  P     
Sbjct: 80  LAWTREWLELAIPKLKPSGSMYIFCTWQYAPEIFSFLK-TQLTMVNEIIWDRRVPSMGGT 138

Query: 142 GRRFQNAHETLIWASPSPKAK------GYTFNYDALKAANEDVQMRSDWL------IPIC 189
            RRF + H+ + + + S             ++ D  KA +  +   S WL        + 
Sbjct: 139 TRRFTSVHDNIGFFAVSKAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVW 198

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           S S   R       HPTQKP  ++ R++++S  PG  +LDPF GSGT+     +  R F+
Sbjct: 199 SVSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFV 258

Query: 250 GIEMKQDYIDIATKRIASV 268
           G E+ + Y  IA +R+ ++
Sbjct: 259 GYEINESYCAIAHERVNAL 277


>gi|172036749|ref|YP_001803250.1| putative methyltransferase [Cyanothece sp. ATCC 51142]
 gi|171698203|gb|ACB51184.1| probable DNA-methyltransferase [Cyanothece sp. ATCC 51142]
          Length = 284

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 76/262 (29%), Positives = 123/262 (46%), Gaps = 33/262 (12%)

Query: 21  DKIIKGNSISVL-EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
             I+ G+SI +L +++  +S+ LIF DPPYN+                  +  DK+ + E
Sbjct: 10  HIILFGDSIKLLDQEIQDESIHLIFVDPPYNIGKKY-------------ANFIDKWPTEE 56

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y  +  +WL  C + L P G+++++ S   I  +   L+     +   I     +    
Sbjct: 57  NYLLWCYSWLELCFKKLHPEGSIYLMASTQTIPYLDIYLRKHIHILSRII--WHYDSSGV 114

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR---------------SDW 184
                F + +E +I+   +P  K YTFN D +K   +    R                  
Sbjct: 115 QAKNYFGSLYEPIIYGVKNP--KSYTFNRDDIKVEAKTGSKRKLIDYRKAIPKVYNSHKV 172

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
              +          +  + HPTQKPEALL RI+++S+  GD ILDPF G+ T+ AVA+K+
Sbjct: 173 PGNVWYFPRVRYRMEEYEKHPTQKPEALLKRIILASSNVGDTILDPFAGTFTTSAVAQKV 232

Query: 245 RRSFIGIEMKQDYIDIATKRIA 266
            R  IGIE+++DYI I  +R+ 
Sbjct: 233 GRKSIGIEIEEDYIKIGLRRLG 254


>gi|323978449|gb|EGB73533.1| DNA methylase [Escherichia coli TW10509]
          Length = 268

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 60/253 (23%), Positives = 103/253 (40%), Gaps = 31/253 (12%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS-----LVDAVTDSWDKFSSFE 79
           +GN++ +L  +  +S+D +  DPPY+     +  R +       L       +D F+   
Sbjct: 30  RGNALEILPLIEPESIDALITDPPYSSGATHKAGRTNQGSHAKYLNGENLHRFDGFAGEN 89

Query: 80  A----YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
                +  +T+ W+    R ++P G   V   +  +  +    Q   F     I W K  
Sbjct: 90  MDARSWAYWTQLWMAQAHRAVRPGGYALVFTDWRQLPALTDAFQASGFTWRGIIAWNKGR 149

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
                    F++  E ++W S     K  +  +D                 P+       
Sbjct: 150 GSRTPHTGYFRHQCEYIVWGSKGHLDKSPSGPFDGCMT------------FPVI------ 191

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                +K+HPT KPE L++ ++ ++   G  +LDPF GSGT+G  A K  R FIGIE   
Sbjct: 192 ---PSKKMHPTGKPEELMAELVRTA-NSGGTVLDPFMGSGTTGVAALKAGRKFIGIETSD 247

Query: 256 DYIDIATKRIASV 268
            Y ++A +R+   
Sbjct: 248 HYFEVAAQRLRGT 260


>gi|167583952|ref|ZP_02376340.1| DNA methylase N-4/N-6 domain protein [Burkholderia ubonensis Bu]
          Length = 283

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 71/259 (27%), Positives = 119/259 (45%), Gaps = 27/259 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++   + ++   +LP  S+DLI ADPPY L  +        S               + +
Sbjct: 34  ELHNRDFMTEAARLPDASIDLIVADPPYGLGKDYGNDSDKRSG--------------DDH 79

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+T AWL      LKP G+++V  ++     I + L+     ++N+I+W +  P     
Sbjct: 80  LAWTLAWLELAIPKLKPTGSMYVFCTWQYAPEIFSFLK-TKLTMINEIIWDRRVPSMGGT 138

Query: 142 GRRFQNAHETLIWASPSPKAK------GYTFNYDALKAANEDVQMRSDWL------IPIC 189
            RRF + H+ + + + S             ++ D  KA +  +   S WL        + 
Sbjct: 139 TRRFTSVHDNIGFFAVSKAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVW 198

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           S S   R       HPTQKP  ++ R++++S  PG  +LDPF GSGT+     +  R F+
Sbjct: 199 SVSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFV 258

Query: 250 GIEMKQDYIDIATKRIASV 268
           G E+ + Y  IA +RIA++
Sbjct: 259 GYEINESYCAIAHERIAAL 277


>gi|109947551|ref|YP_664779.1| hypothetical protein Hac_1016 [Helicobacter acinonychis str.
           Sheeba]
 gi|109714772|emb|CAJ99780.1| unnamed protein product [Helicobacter acinonychis str. Sheeba]
          Length = 374

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 114/293 (38%), Gaps = 40/293 (13%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
           +      ++  N I  + ++I   +S+  L+KLP   +D++   PPYN  +N    +  +
Sbjct: 105 ETYKKEFSKETNEIQSYLNQIYCADSLEFLKKLPNNCIDIVLTSPPYNFGINYNATQDAN 164

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW-----VIGSY-HNIFRIGT 116
                          ++ Y     A    C RVLK  G +      +   Y      I  
Sbjct: 165 --------------LWQEYFNTLFAIFTECIRVLKSGGRIIVNIQPMFSDYIPTHHFISK 210

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL-IWASPSPKAKGYTFNYDALKAAN 175
              +       +I+W K+N         +   + T   W SP+     Y++ +  +   N
Sbjct: 211 SFIDSGLIWKGEILWEKNN---------YNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKN 261

Query: 176 E--------DVQMRSDWLIPICSGSERLRNKDGEK--LHPTQKPEALLSRILVSSTKPGD 225
                    ++ +  D       G      +   K   H    PE L+ R L   +   D
Sbjct: 262 NLKKEGDKNNIDITDDEFKKWVYGKWNFAPERNMKQYGHDAMFPEELVKRCLKLFSYQND 321

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278
           IILDPF G+GT+  VAK+L R FIGI++ + Y ++A  R+     L N+   +
Sbjct: 322 IILDPFNGAGTTTKVAKQLGRRFIGIDISEKYCEVAKARLKEATDLFNVRDII 374


>gi|325921368|ref|ZP_08183225.1| DNA modification methylase [Xanthomonas gardneri ATCC 19865]
 gi|325548126|gb|EGD19123.1| DNA modification methylase [Xanthomonas gardneri ATCC 19865]
          Length = 240

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 67/260 (25%), Positives = 101/260 (38%), Gaps = 30/260 (11%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDAVT-----DS 71
           K+++++G+++++L  L A S D +  DPPY    L    +   P    V         D 
Sbjct: 2   KNQLLQGDALTILPTLEANSFDALITDPPYASGGLTAAARAKPPSQKYVQGGGAQLHADF 61

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
                   ++  +   WL  C RVLK    + +   +  +      LQ   F      VW
Sbjct: 62  VGDERDQRSHLKWMHLWLSECARVLKDGAPVLLFTDWRQLPLTTDALQIAGFTWRGITVW 121

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
            K+  +    G RF+N  E ++W S                          D   P+  G
Sbjct: 122 DKTEGVRPQLG-RFRNQAEYIVWGSKGNM--------------------PLDRRAPVLPG 160

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
             R   +  +K H T KP  L+ R LV   + G  +LDPF GSGT+   A       +GI
Sbjct: 161 VIRESVRKADKHHLTGKPTELM-RQLVRICEAGGRVLDPFAGSGTTLVAAYLEGFESLGI 219

Query: 252 EMKQDYIDIATKRIASVQPL 271
           EM   Y  +   R+   QPL
Sbjct: 220 EMIDQYAAVTRDRLEKTQPL 239


>gi|170691068|ref|ZP_02882234.1| DNA methylase N-4/N-6 domain protein [Burkholderia graminis C4D1M]
 gi|170144317|gb|EDT12479.1| DNA methylase N-4/N-6 domain protein [Burkholderia graminis C4D1M]
          Length = 303

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 67/257 (26%), Positives = 120/257 (46%), Gaps = 27/257 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +++  + ++ +  +P  S+DLI  DPPY L   G+ Y  D               + + +
Sbjct: 39  QLLNRDFLTDVANIPDASIDLILCDPPYGL---GKDYGNDS-----------DMRTGDDF 84

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+TR WL      LKP+G+L++  ++     I + L+     ++N+I+W +  P     
Sbjct: 85  LAWTRGWLELAIPKLKPSGSLYIFCTWQYAPEIFSFLK-TKLTMINEIIWDRRVPSMGGT 143

Query: 142 GRRFQNAHETLIWASPSPKAK------GYTFNYDALKAANEDVQMRSDWL------IPIC 189
            RRF + H+ + + + S             ++    KA +  +   S WL        + 
Sbjct: 144 TRRFTSVHDNIGFFAVSKDYYFDLDPVRIPYDAVTKKARSRKLFEGSKWLELGYNPKDVW 203

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           S S   R       HPTQKP  ++ R++++S   G  +LDPF GSGT+     + +R F+
Sbjct: 204 SVSRLHRQHAERVDHPTQKPLEIVERMVLASCPKGGRVLDPFMGSGTTAVACARQQREFV 263

Query: 250 GIEMKQDYIDIATKRIA 266
           G E+ + Y  IA +R++
Sbjct: 264 GYEINESYCAIARERVS 280


>gi|162146214|ref|YP_001600673.1| modification methylase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161784789|emb|CAP54331.1| putative modification methylase [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 226

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 67/258 (25%), Positives = 108/258 (41%), Gaps = 41/258 (15%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
           +  N N+  ++++ I+ G+S+ ++  LP  SVD I  DPPY +   G+  R   +  +A 
Sbjct: 1   MTGNTNTATDFRNTILNGDSVQLMRALPRNSVDFILTDPPYLVNYQGRDGRKVRNDDNAC 60

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
                          + R       RVLK  G       ++ I       +   F ++  
Sbjct: 61  ---------------WLRPAFNQMHRVLKWGGFAVSFYGWNRIDLFADAWKAAGFRMVGH 105

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
           IV+RKS    +   R    +   L   +  P AK                 +     +P 
Sbjct: 106 IVFRKSYSSSSRFLRYEHESAYLLAKGNVMPPAKP----------------IPDVLDMPY 149

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
                      G KLHPTQKP A L  ++ +    G ++LDPF GSG+S   A+ L R +
Sbjct: 150 ----------SGNKLHPTQKPVASLLPLVETFCPVGGLVLDPFAGSGSSLVAAQHLGRDW 199

Query: 249 IGIEMKQDYIDIATKRIA 266
           +G+E+  D+   AT+R+A
Sbjct: 200 LGMELDPDHAATATRRLA 217


>gi|119489624|ref|ZP_01622384.1| DNA-methyltransferase [Lyngbya sp. PCC 8106]
 gi|119454536|gb|EAW35684.1| DNA-methyltransferase [Lyngbya sp. PCC 8106]
          Length = 295

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 78/297 (26%), Positives = 136/297 (45%), Gaps = 32/297 (10%)

Query: 18  EWKDKIIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +  +  G+++ +L  ++ + SVDLIF DPPYN+                 ++ +DK+ 
Sbjct: 7   DDQHTLFYGDALQILSSEISSNSVDLIFIDPPYNIGKR-------------FSNFYDKWE 53

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           S E Y  +    L  C RVLKP+GTL+V+ S   +      L+     IL+ IVW   + 
Sbjct: 54  SEEKYANWAYKLLDECLRVLKPSGTLYVMTSTQAMPYFDLYLRQ-KTVILSRIVWHYDSS 112

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI---------- 186
                 + F + +E ++    +     +  +   ++A     +   D+            
Sbjct: 113 GVQ-AKKYFGSMYEPILHCVKNKNNYIFNSDDIKVEAKTGAQRKLIDYRKAVPCQYNTEK 171

Query: 187 ---PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
               +          +  + HP+QKPEALL RI+++S+    ++LDPF G+ TS AVAK+
Sbjct: 172 VPGNVWYFPRVRYRMEEYEKHPSQKPEALLERIILASSNQDSLVLDPFAGTFTSAAVAKR 231

Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           L R  I IE +++Y+ I  +R+  ++        +LT  +   R   N   E+  IQ
Sbjct: 232 LGRISISIESQEEYLKIGLRRVLGLKEYKGE--KLLTPSKNHTRKNKNS-PEKNFIQ 285


>gi|289661920|ref|ZP_06483501.1| site-specific DNA-methyltransferase [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 234

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 61/255 (23%), Positives = 101/255 (39%), Gaps = 30/255 (11%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDAVT-----DS 71
           K+++++G+++++L  L A S D +  DPPY    L    +   P    V         D 
Sbjct: 2   KNQLLQGDALTILPTLEANSFDALITDPPYASGGLTAAARAKPPSQKYVQGGGPQLHADF 61

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
                   ++  +   WL  C RVLK    + +   +  +      LQ   F      VW
Sbjct: 62  VGDERDQRSHLKWMHLWLSECARVLKDGAPVLLFTDWRQLPLTTDALQIAGFTWRGITVW 121

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
            K+  +    G RF+N  E ++W S                          D   P+  G
Sbjct: 122 DKTEGVRPQLG-RFRNQAEYIVWGSKGNM--------------------PLDRRAPVLPG 160

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
             R   +  +K H T KP  L+  ++    + G  ++DPF GSGT+   A+     + GI
Sbjct: 161 VIREAVRKNDKHHLTGKPTELMRHLVRI-CEVGGRVIDPFAGSGTTLLAAQLEGYEWTGI 219

Query: 252 EMKQDYIDIATKRIA 266
           EM   Y+ +A+ R+ 
Sbjct: 220 EMTPHYLQVASDRLR 234


>gi|188577617|ref|YP_001914546.1| DNA methylase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188522069|gb|ACD60014.1| DNA methylase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 236

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 65/255 (25%), Positives = 102/255 (40%), Gaps = 30/255 (11%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDAVT-----DS 71
           K+++++G+++++L  L A   D +  DPPY    L    +   P    V         D 
Sbjct: 2   KNQLLQGDALTILPTLEANLFDALITDPPYASGGLTAAARAKPPSQKYVQGGGAQLHADF 61

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
                    + A+   WL  C R+LK    + +   +  +      LQ   F      VW
Sbjct: 62  VGDERDQRGHLAWMHLWLSECARLLKEGAPVLLFTDWRQLPLTTDALQAAGFTWRGVAVW 121

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
            K+  +    G RF+N  E ++W S                          D   P+  G
Sbjct: 122 DKTEGVRPQLG-RFRNQAEYIVWGSKGGM--------------------PLDRRAPVLPG 160

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
             R      +K H T KP  L+ R++    + G  ILDPF GSGT+   A+     + G+
Sbjct: 161 VVRTPVLKADKHHLTGKPTELMRRLVRI-CEAGGRILDPFAGSGTTLVAAELEGYRWTGV 219

Query: 252 EMKQDYIDIATKRIA 266
           EM Q Y +IA +R+A
Sbjct: 220 EMTQHYAEIARERLA 234


>gi|194290204|ref|YP_002006111.1| DNA-methyltransferase [Cupriavidus taiwanensis LMG 19424]
 gi|193224039|emb|CAQ70048.1| DNA-METHYLTRANSFERASE (DNA-MODIFICATION METHYLASE) PROTEIN;
           Adenine-specific methyltransferase,
           N4/N6-methyltransferase family [Cupriavidus taiwanensis
           LMG 19424]
          Length = 309

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 66/248 (26%), Positives = 112/248 (45%), Gaps = 27/248 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++ + +    + +LP  SVDLI ADPPY L   G+ Y  D  L+             +AY
Sbjct: 29  RLFQEDMFEGIARLPDGSVDLIVADPPYGL---GKDYGNDSDLLSG-----------QAY 74

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             ++  W+ A    L P GTL++  ++     +  ML+     ++N+I+W +  P     
Sbjct: 75  LDWSERWMDAVVPKLAPKGTLYLFCTWQYSPELFVMLKR-RLTMINEIIWDRRVPSMGGT 133

Query: 142 GRRFQNAHETLIWASPSPKAK------GYTFNYDALKAANEDVQMRSDWL------IPIC 189
            R+F + H+ + + + +             ++ +  KA +        WL        + 
Sbjct: 134 TRKFSSVHDNIGFFARARDYYFDLDPVRIPYDPETKKARSRPRFEGKKWLEVGYNPKDLW 193

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           S S   R       HPTQKP  ++ R+++SS  PG ++LDPF GSGT+     +  R F 
Sbjct: 194 SVSRIHRQDPERANHPTQKPLEIVERMVLSSCPPGGLVLDPFAGSGTTAVACLRHGRRFA 253

Query: 250 GIEMKQDY 257
           G E+  +Y
Sbjct: 254 GFEINPEY 261


>gi|218439992|ref|YP_002378321.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
 gi|218172720|gb|ACK71453.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
          Length = 305

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 62/272 (22%), Positives = 119/272 (43%), Gaps = 31/272 (11%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           +  + DKI+ G+ + +  K+P +S+D+ FADPP+N +      + +              
Sbjct: 2   LDSYIDKILLGDCLDLFSKIPDESIDVTFADPPFNFKKKYGNIKDN-------------- 47

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
             F+ Y  +   W+    RV KP+G++++      +    + L N      + I W    
Sbjct: 48  LEFKEYLKWCELWIDEMIRVTKPSGSIFIHNIPKWLTYYCSFL-NEKSNFRHWISWDAPT 106

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW----------- 184
                 G+  Q +H  +++ + +     +     + K   +   +  D+           
Sbjct: 107 A---PMGKTLQPSHYGILFYAKTLAKNKFYEIRYSHKRCRKCNYLYKDYGGKKDSIHPFG 163

Query: 185 --LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
             +  + +   R+++      HP Q P  LL RI++ ST   DIILDPF G+GT+   AK
Sbjct: 164 PLVSDVWTDIHRIKHNKYRDNHPCQLPVHLLERIILMSTDESDIILDPFMGTGTTAIAAK 223

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
           +L R +IG E+ + Y+++A  ++   +    I
Sbjct: 224 RLGRHYIGFEINELYLEVAEGKLRQEKDNSKI 255


>gi|261379137|ref|ZP_05983710.1| DNA modification methylase [Neisseria cinerea ATCC 14685]
 gi|269144409|gb|EEZ70827.1| DNA modification methylase [Neisseria cinerea ATCC 14685]
 gi|325564263|gb|ADZ31429.1| M.NciI methyltransferase/endonuclease fusion protein [Neisseria
           cinerea]
          Length = 513

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 68/282 (24%), Positives = 116/282 (41%), Gaps = 33/282 (11%)

Query: 12  NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ-------LNGQLYRPDHSL 64
           N+ ++ +  +K I G+S+  ++KLP+KS+DLIF  PPYNL+        +G+  +  ++ 
Sbjct: 4   NKFNLEKILNKFICGDSLQKMKKLPSKSIDLIFTSPPYNLKNSTGNGMKDGRGGKWSNAR 63

Query: 65  VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH-NIFRIGTMLQNLNF 123
           +    D+ D     + Y  + R  L    R++K +G ++    +      +      +  
Sbjct: 64  LIEGYDNHDDCMPHDEYVKWQRKCLKEMLRLIKDDGAIFYNHKWRVQNGLLQDRADIVKG 123

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
           + +  I+  K     NF    F   +E +      P       N                
Sbjct: 124 FPVRQIIIWKRKGGINFNPGYFLPTYEVIYLICKKPFKLAKGANSF-------------- 169

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
                  G      +D    HP   P  L  R++ S+     I+LDPF GSGT+   A  
Sbjct: 170 -------GDIWEFTQDMNNEHPAPFPLELAKRVVQSTN--AQIVLDPFMGSGTTAIAAAL 220

Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           L R FIGIE+  +Y+ I+ KR  ++   GN+    +     E
Sbjct: 221 LDRKFIGIELSSEYVKISKKRYNNI--FGNLFGVDMKTFTKE 260


>gi|221215280|ref|ZP_03588245.1| DNA methylase [Burkholderia multivorans CGD1]
 gi|221164712|gb|EED97193.1| DNA methylase [Burkholderia multivorans CGD1]
          Length = 214

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 59/245 (24%), Positives = 92/245 (37%), Gaps = 43/245 (17%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+ + VL  +P   VD +  DPPY +  +    R   S+ + V   W          
Sbjct: 4   LYNGDCLEVLPTIPDSVVDFVLTDPPYLVNYHD---RSGRSIANDVKSDW---------- 50

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNFR 141
                      RV+KPN        +          +     I+  IV+ KS      F 
Sbjct: 51  --LAPAFAEVYRVMKPNTLCVSFYGWTKTDLFFDAWKRAGLRIVGHIVFAKSYASKSRFV 108

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
             R ++A+                          +      D  +P     E      G 
Sbjct: 109 AYRHESAY-----------------------VLAKGQPAVPDTALPDVMRWEY----SGN 141

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           + HPTQKP   L R++ + T  GD++LDPF GSG++   A++L R +IGIE+   Y   A
Sbjct: 142 RHHPTQKPVPCLKRLIETYTAAGDVVLDPFAGSGSTCVAARELGRYYIGIELDPTYYTAA 201

Query: 262 TKRIA 266
            +R+ 
Sbjct: 202 CERLE 206


>gi|88854936|ref|ZP_01129602.1| DNA methyltransferase [marine actinobacterium PHSC20C1]
 gi|88816097|gb|EAR25953.1| DNA methyltransferase [marine actinobacterium PHSC20C1]
          Length = 286

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 73/279 (26%), Positives = 124/279 (44%), Gaps = 28/279 (10%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQL------YRPDHSLVDAVTDSWDK 74
           D +++G+++SV+  LP +S  LI+ DPP+N     +          + +      +++D 
Sbjct: 11  DLVVQGDNLSVISALPDESFRLIYIDPPFNTGRTQRRQALTTQRSAEGARTGFGGNTYDT 70

Query: 75  FS--------SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFW 124
                     +F  Y  F    L    R+L   GTL++   Y  +      L  L     
Sbjct: 71  IKGALYSYDDTFADYWEFLEPRLHEAWRLLDDRGTLYLHLDYREVHYAKVALDALFGRES 130

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN--------YDALKAANE 176
            LN+I+W           +++ + H+T++    +P  K Y FN        Y A      
Sbjct: 131 FLNEIIWAYDYGA--RATKKWPSKHDTILVYVKNP--KNYYFNNEEVDREPYMAPGLVTP 186

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
           +   R      +   +        +  + TQKPE +L RI+ +S++PGD +LD F GSGT
Sbjct: 187 EKAARGKLPTDVWWHTIVSPTGKEKTGYATQKPEGILRRIVQASSQPGDWVLDFFAGSGT 246

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           +GAVA+ L+R  + +E     I+I T+R++S     NI 
Sbjct: 247 TGAVAQALKRRVVLVEQNPAAIEIITRRLSSETAFANIN 285


>gi|297379533|gb|ADI34420.1| Modification methylase [Helicobacter pylori v225d]
          Length = 369

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 109/288 (37%), Gaps = 40/288 (13%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
           +      ++  N I    ++I   +S+  L+KLP   +D++   PPYN  +N    +  +
Sbjct: 105 ESYKKEFSKETNEIQSCLNQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGINYSTTQDAN 164

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW-----VIGSY-HNIFRIGT 116
                          ++ Y     A    C RVLK  G +      +   Y      I  
Sbjct: 165 --------------LWQEYFNTLFAIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISK 210

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL-IWASPSPKAKGYTFNYDALKAAN 175
              +       +I+W K+N         +   + T   W SP+     Y++ +  +   N
Sbjct: 211 FFIDEGLIWKGEILWEKNN---------YNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKN 261

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKL----------HPTQKPEALLSRILVSSTKPGD 225
              +      I I     +                   H    PE L+ R L   +   D
Sbjct: 262 NLKKEGDKDSIDITDDEFKKWVYGKWNFAPERNMKQYGHDAMFPEELVKRCLKLFSYQND 321

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           IILDPF G+GT+  VAK+L R FIGI++ + Y ++A  R+  V  L N
Sbjct: 322 IILDPFNGAGTTTKVAKQLGRRFIGIDISEKYCEVARARLKEVTNLFN 369


>gi|315154648|gb|EFT98664.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0043]
          Length = 393

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 72/299 (24%), Positives = 128/299 (42%), Gaps = 32/299 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +I G++++ L+K+ + S+DLI+ DPP+  Q   +L   ++       DSW+   S   Y 
Sbjct: 3   LILGDNLNELKKIESDSIDLIYLDPPFFTQKKQKLKNKENKEYS-FDDSWE---SIAEYT 58

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F +  L  C+RVLK  G++++         +   L  +    +       +    +   
Sbjct: 59  TFIKDRLFECKRVLKETGSIFLHCDKTASHYLRVCLDEVFGMNMFQSEIIWNYKRWSNSK 118

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ----------------------- 179
           +   N H+ + + S + K K  T   D     N D                         
Sbjct: 119 KGLLNNHQNIYFYSKTGKFKFNTIYTDYSSTTNIDQILADRIKDENSKTKYKLDENGEPL 178

Query: 180 ----MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
                +   L  + +             +PTQKP  LL +I+  +T+  DIILDPF GSG
Sbjct: 179 IGKEKKGVPLSDVWNIPYLNPKAKERTGYPTQKPILLLEQIIKLTTEENDIILDPFCGSG 238

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS-VQPLGNIELTVLTGKRTEPRVAFNLL 293
           T+   +K L+R +IGI+  +D I +A +R+ + V+   N+     +  +T+  +  N+L
Sbjct: 239 TTLVASKILKRRYIGIDQSKDAIKLAEERLKNVVKTESNLLKKGESSYKTKTDLELNIL 297


>gi|315586305|gb|ADU40686.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori 35A]
          Length = 369

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 113/288 (39%), Gaps = 40/288 (13%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
           +      ++  N I    ++I   +S+  L+KLP   +D++   PPYN  +N    +  +
Sbjct: 105 ESYKKEFSKETNEIQSCLNQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGINYSATQDAN 164

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW-----VIGSY-HNIFRIGT 116
                          ++ Y     A    C RVLK  G +      +   Y      I  
Sbjct: 165 --------------LWQEYFNTLFAIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISK 210

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL-IWASPSPKAKGYTFNYDALKAAN 175
              +       +I+W K+N         +   + T   W SP+     Y++ +  +   N
Sbjct: 211 FFIDEGLIWKGEILWEKNN---------YNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKN 261

Query: 176 --------EDVQMRSDWLIPICSGSERLRNKDGEK--LHPTQKPEALLSRILVSSTKPGD 225
                   +++ +  D       G      +   K   H    PE L+ R L   +   D
Sbjct: 262 NLKKEGDKDNIDITDDEFKKWVYGKWNFAPERNMKQYGHDAMFPEELVKRCLKLFSYQND 321

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           IILDPF G+GT+  VAK+L R FIGI++ + Y ++A  R+  V  L N
Sbjct: 322 IILDPFNGAGTTTKVAKQLGRRFIGIDISEKYCEVARARLKEVTNLFN 369


>gi|317179291|dbj|BAJ57079.1| DNA methylase [Helicobacter pylori F30]
          Length = 369

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 109/288 (37%), Gaps = 40/288 (13%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
           +      ++  N I    ++I   +S+  L+KLP   +D++   PPYN  +N    +  +
Sbjct: 105 ESYKKEFSKETNEIQSCLNQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGINYSATQDTN 164

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW-----VIGSY-HNIFRIGT 116
                          ++ Y     A    C RVLK  G +      +   Y      I  
Sbjct: 165 --------------LWQEYFNTLFAIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISK 210

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL-IWASPSPKAKGYTFNYDALKAAN 175
              +       +I+W K+N         +   + T   W SP+     Y++ +  +   N
Sbjct: 211 FFIDEGLIWKGEILWEKNN---------YNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKN 261

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKL----------HPTQKPEALLSRILVSSTKPGD 225
              +      I I     +                   H    PE L+ R L   +   D
Sbjct: 262 NLKKEGDKDSIDITDDEFKKWVYGKWNFAPERNMKQYGHDAMFPEELVKRCLKLFSYQND 321

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           IILDPF G+GT+  VAK+L R FIGI++ + Y ++A  R+  V  L N
Sbjct: 322 IILDPFNGAGTTTKVAKQLGRRFIGIDISEKYCEVARARLKEVTNLFN 369


>gi|83716900|ref|YP_438879.1| N-6 adenine-specific DNA methylase [Burkholderia thailandensis
           E264]
 gi|83650725|gb|ABC34789.1| N-6 adenine-specific DNA methylase [Burkholderia thailandensis
           E264]
          Length = 259

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 72/262 (27%), Positives = 120/262 (45%), Gaps = 33/262 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++   + +     LP  S+DLI ADPPY L  +        S               + +
Sbjct: 7   ELHNRDFLHEAASLPDASIDLIVADPPYGLGKDYGNDSDKRSG--------------DEH 52

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+TR WL      LK  G+++V  ++     I + L+     ++N+I+W +  P     
Sbjct: 53  LAWTREWLELAIPKLKSTGSMYVFCTWQYAPEIFSFLK-TRLTMINEIIWDRRVPSMGGT 111

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR---------SDWL------I 186
            RRF + H+ + + +    +KGY F+ D ++   +    +         S WL       
Sbjct: 112 TRRFTSVHDNIGFFA---VSKGYYFDLDPVRIPYDADTKKARSRKLFEGSKWLELGYNPK 168

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            + S S   R       HPTQKP  ++ R++++S  PG  +LDPF GSGT+     + RR
Sbjct: 169 DVWSVSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQRR 228

Query: 247 SFIGIEMKQDYIDIATKRIASV 268
            F+G E+ + Y  IA +R+AS+
Sbjct: 229 DFVGYEINESYCAIARERVASL 250


>gi|184200490|ref|YP_001854697.1| putative methyltransferase [Kocuria rhizophila DC2201]
 gi|183580720|dbj|BAG29191.1| putative methyltransferase [Kocuria rhizophila DC2201]
          Length = 289

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 75/275 (27%), Positives = 122/275 (44%), Gaps = 36/275 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLN-------------------GQLYRPDHS 63
           I+ G +++VLE LP +S  L++ DPP+N   +                   G   R   +
Sbjct: 17  IVHGENLTVLESLPDESFSLVYLDPPFNTGRDQVRRTTRSVPVAHGEGDRVGFAGRSYET 76

Query: 64  LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-- 121
           ++ ++    D   SF  Y  F    L   RRVL  +GTL+V   Y  +  +  +L  +  
Sbjct: 77  IMGSLRRYED---SFADYLGFLEPRLAHARRVLARHGTLYVHLDYREVHYVKVLLDAMFG 133

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN--------YDALKA 173
               LN+IVW           RR+   H+T++     P A  Y FN        Y A   
Sbjct: 134 RECFLNEIVWAYDFGGRTT--RRWPAKHDTILVYVKDPAA--YHFNSQDVDREPYMAPGL 189

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
              +   R      +   +        +  +PTQKP  +L RI+ +S++PGD +LD F G
Sbjct: 190 VGPEKAARGKLPTDVWWHTIVSPTGREKTGYPTQKPAGVLRRIVTASSRPGDWVLDFFAG 249

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           SGT+GAV+ +L R F+ ++   + +++   R+  V
Sbjct: 250 SGTTGAVSAELGRRFVCVDSNPEAVEVMRLRLPDV 284


>gi|76819441|ref|YP_335927.1| DNA methylase [Burkholderia pseudomallei 1710b]
 gi|76583914|gb|ABA53388.1| DNA methylase [Burkholderia pseudomallei 1710b]
          Length = 258

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 72/262 (27%), Positives = 120/262 (45%), Gaps = 33/262 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++   + +     LP  S+DLI ADPPY L  +        S               + +
Sbjct: 6   ELHNRDFLHEAASLPDASIDLIVADPPYGLGKDYGNDSDKRSG--------------DEH 51

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+TR WL      LK  G+++V  ++     I + L+     ++N+I+W +  P     
Sbjct: 52  LAWTREWLELAVPKLKSTGSMYVFCTWQYAPEIFSFLK-TKLTMVNEIIWDRRVPSMGGT 110

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR---------SDWL------I 186
            RRF + H+ + + +    +KGY F+ D ++   +    +         S WL       
Sbjct: 111 TRRFTSVHDNIGFFA---VSKGYYFDLDPVRIPYDADTKKARSRKLFEGSKWLELGYNPK 167

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            + S S   R       HPTQKP  ++ R++++S  PG  +LDPF GSGT+     + RR
Sbjct: 168 DVWSVSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQRR 227

Query: 247 SFIGIEMKQDYIDIATKRIASV 268
            F+G E+ + Y  IA +R+AS+
Sbjct: 228 GFVGYEINESYCAIARERVASL 249


>gi|107026752|ref|YP_624263.1| DNA methylase N-4/N-6 [Burkholderia cenocepacia AU 1054]
 gi|116692056|ref|YP_837589.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           cenocepacia HI2424]
 gi|170735951|ref|YP_001777211.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           cenocepacia MC0-3]
 gi|105896126|gb|ABF79290.1| DNA methylase N-4/N-6 [Burkholderia cenocepacia AU 1054]
 gi|116650056|gb|ABK10696.1| DNA methylase N-4/N-6 domain protein [Burkholderia cenocepacia
           HI2424]
 gi|169818139|gb|ACA92721.1| DNA methylase N-4/N-6 domain protein [Burkholderia cenocepacia
           MC0-3]
          Length = 283

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 68/259 (26%), Positives = 119/259 (45%), Gaps = 27/259 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++   + ++    LP  S+DLI ADPPY L  +        S               + +
Sbjct: 34  ELHNRDFLTHAAYLPDASIDLIVADPPYGLGKDYGNDSDKRSG--------------DDF 79

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+TR WL      LKP+G++++  ++     I + L+     ++N+I+W +  P     
Sbjct: 80  LAWTRGWLELAIPKLKPSGSMYIFCTWQYAPEIFSFLK-TQLTMVNEIIWDRRVPSMGGT 138

Query: 142 GRRFQNAHETLIWASPSPKAK------GYTFNYDALKAANEDVQMRSDWL------IPIC 189
            RRF + H+ + + + S             ++ D  KA +  +   S WL        + 
Sbjct: 139 TRRFTSVHDNIGFFAVSKAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVW 198

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           S S   R       HPTQKP  ++ R++++S  PG  +LDPF GSGT+     +  R F+
Sbjct: 199 SVSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFV 258

Query: 250 GIEMKQDYIDIATKRIASV 268
           G E+ + Y  IA +R++++
Sbjct: 259 GYEINESYCAIAHERVSAL 277


>gi|217033395|ref|ZP_03438825.1| hypothetical protein HP9810_1g9 [Helicobacter pylori 98-10]
 gi|216944100|gb|EEC23528.1| hypothetical protein HP9810_1g9 [Helicobacter pylori 98-10]
          Length = 369

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 69/288 (23%), Positives = 113/288 (39%), Gaps = 40/288 (13%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
           +      ++  N I    D+I   +S+  L+KLP   +D++   PPYN  +N    +  +
Sbjct: 105 ESYKKEFSKETNEIQSCLDQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGINYSATQDAN 164

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW-----VIGSY-HNIFRIGT 116
                          ++ Y     A    C RVLK  G +      +   Y      I  
Sbjct: 165 --------------LWQEYFNTLFAIFKECIRVLKNGGRIIVNIQPMFSDYIPTHHFISK 210

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL-IWASPSPKAKGYTFNYDALKAAN 175
              +       +I+W K+N         +   + T   W SP+     Y++ +  +   N
Sbjct: 211 FFIDEGLIWKGEILWEKNN---------YNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKN 261

Query: 176 --------EDVQMRSDWLIPICSGSERLRNKDGEK--LHPTQKPEALLSRILVSSTKPGD 225
                   +++ +  D       G      +   K   H    PE L+ R L   +   D
Sbjct: 262 NLKKEGDKDNIDITDDEFKKWVYGKWNFAPERNMKQYGHDAMFPEELVKRCLKLFSYQND 321

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           IILDPF G+GT+  VAK+L R FIGI++ + Y ++A  R+  V  L N
Sbjct: 322 IILDPFNGAGTTTKVAKQLGRRFIGIDISEKYCEVAKARLKEVTNLFN 369


>gi|163846243|ref|YP_001634287.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222523998|ref|YP_002568468.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus sp.
           Y-400-fl]
 gi|163667532|gb|ABY33898.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222447877|gb|ACM52143.1| DNA methylase N-4/N-6 domain protein [Chloroflexus sp. Y-400-fl]
          Length = 337

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 76/290 (26%), Positives = 123/290 (42%), Gaps = 43/290 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I  G++I+ L  L  +SVD+IFADPPYN++                   WD F S  AY
Sbjct: 63  EIWIGDAIAWLRSLETESVDMIFADPPYNIRKA----------------EWDSFESQAAY 106

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             ++  W+    RVLKP GTL+ I  +  I     +  +  F     ++W   N      
Sbjct: 107 VEWSLEWISEAARVLKPTGTLY-ICGFSEIIADLKLPASRFFKGCRWLIWHYKNKAN--L 163

Query: 142 GRRFQNAHETLIWASPSPK-----------AKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           G+ +  +HE+++      +              +T  Y     A      R      +  
Sbjct: 164 GKDWGRSHESILHFRKDRQFTFNIDDIRIPYGHHTLKYPDHPQAETSQYSRGRRRQAVWR 223

Query: 191 GSER-------------LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
              R                   +  HPTQKPE LL +++++S+  GD+I+DPF GSGT+
Sbjct: 224 PHPRGAKPRDVLEIPTTCNGMHEKTPHPTQKPEELLRKLVLASSNVGDVIVDPFLGSGTT 283

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
             VA++L+R + G ++  +Y   A +RI  V+     +      +  E R
Sbjct: 284 AVVAEQLKRRWKGCDISLEYCQWAVQRIELVEDWPIEKWIQYDFENAERR 333


>gi|320537687|ref|ZP_08037615.1| DNA (cytosine-5-)-methyltransferase [Treponema phagedenis F0421]
 gi|320145465|gb|EFW37153.1| DNA (cytosine-5-)-methyltransferase [Treponema phagedenis F0421]
          Length = 228

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 60/247 (24%), Positives = 104/247 (42%), Gaps = 35/247 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +++ G+ +  L K+P +S+  I  DPPY L +     +               F+     
Sbjct: 8   ELLHGDCLDFLPKIPDESIQSIITDPPYFLGMTHNSQK-------------GCFNDLAIC 54

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F        +R+LKP+G ++    + +      +L ++       +  +   P  N  
Sbjct: 55  KPFYEKLFKEYKRILKPDGCIYFFCDWRSYAFYYPLLDSVMQVKNLLVWKKHGRPSLNVY 114

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G    + HE ++++      K Y  N                    + S +   R  +GE
Sbjct: 115 G----SGHELIMFSGKIK--KSYITNIID----------------DVASFNIGARKTNGE 152

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+HPTQKP  L+ + +  ST  GD++LD F GSGT+G       R FIG+E+  +Y +IA
Sbjct: 153 KIHPTQKPIELMEKFIFDSTDEGDVVLDSFMGSGTTGIACLNTNRRFIGMEIDDNYFNIA 212

Query: 262 TKRIASV 268
             R+ + 
Sbjct: 213 KNRLETA 219


>gi|188527117|ref|YP_001909804.1| DNA methylase [Helicobacter pylori Shi470]
 gi|308182486|ref|YP_003926613.1| DNA methylase [Helicobacter pylori PeCan4]
 gi|188143357|gb|ACD47774.1| DNA methylase [Helicobacter pylori Shi470]
 gi|308063174|gb|ADO05061.1| DNA methylase [Helicobacter pylori Sat464]
 gi|308064671|gb|ADO06563.1| DNA methylase [Helicobacter pylori PeCan4]
          Length = 369

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 109/288 (37%), Gaps = 40/288 (13%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
           +      ++  N I    ++I   +S+  L+KLP   +D++   PPYN  +N    +  +
Sbjct: 105 ESYKKEFSKETNEIQSCLNQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGINYSATQDAN 164

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW-----VIGSY-HNIFRIGT 116
                          ++ Y     A    C RVLK  G +      +   Y      I  
Sbjct: 165 --------------LWQEYFNTLFAIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISK 210

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL-IWASPSPKAKGYTFNYDALKAAN 175
              +       +I+W K+N         +   + T   W SP+     Y++ +  +   N
Sbjct: 211 FFIDEGLIWKGEILWEKNN---------YNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKN 261

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKL----------HPTQKPEALLSRILVSSTKPGD 225
              +      I I     +                   H    PE L+ R L   +   D
Sbjct: 262 NLKKEGDKDSIDITDDEFKKWVYGKWNFAPERNMKQYGHDAMFPEELVKRCLKLFSYQND 321

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           IILDPF G+GT+  VAK+L R FIGI++ + Y ++A  R+  V  L N
Sbjct: 322 IILDPFNGAGTTTKVAKQLGRRFIGIDISEKYCEVARARLKEVTNLFN 369


>gi|108562739|ref|YP_627055.1| DNA methylase [Helicobacter pylori HPAG1]
 gi|107836512|gb|ABF84381.1| DNA methylase [Helicobacter pylori HPAG1]
          Length = 369

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 111/288 (38%), Gaps = 40/288 (13%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
           +      ++  N I    ++I   +S+  L+KLP   +D++   PPYN  +N    +  +
Sbjct: 105 ESYKKEFSKETNEIQSCLNQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGINYNATQDTN 164

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW-----VIGSY-HNIFRIGT 116
                          ++ Y     A    C RVLK  G +      +   Y      I  
Sbjct: 165 --------------LWQEYFNALFAIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISK 210

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL-IWASPSPKAKGYTFNYDALKAAN 175
              +       +I+W K+N         +   + T   W SP+     Y++ +  +   N
Sbjct: 211 FFIDEGLIWKGEILWEKNN---------YNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKN 261

Query: 176 --------EDVQMRSDWLIPICSGSERLRNKDGEK--LHPTQKPEALLSRILVSSTKPGD 225
                   + + +  D       G      +   K   H    PE L+ R L   +   D
Sbjct: 262 SLKKEGDKDSIDITDDEFKKWVYGKWNFAPERNMKQYGHDAMFPEELVKRCLKLFSYQND 321

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           I+LDPF G+GT+  VAK+L R FIGI++ + Y + A  R+  V  L N
Sbjct: 322 IVLDPFNGAGTTTKVAKQLGRRFIGIDISEKYCEAARARLKEVTDLFN 369


>gi|209527763|ref|ZP_03276257.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
 gi|209491796|gb|EDZ92157.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
          Length = 397

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 130/308 (42%), Gaps = 52/308 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           + +G+ ++++      S+DLI+ DPP+  Q   +L   D     +  D W   SS + Y 
Sbjct: 5   VYQGDCLNIISTWEKDSIDLIYLDPPFFSQKTHKLTTRDSRKEFSFQDLW---SSHQEYG 61

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPNF 140
            F    L    R+L P+G+++V    H    I  +L ++       ++I+W       + 
Sbjct: 62  NFIYQRLQEMWRILSPSGSIFVHCDRHASHLIRLLLDDVFSPQMFRSEIIWHYKRWSNSQ 121

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA-------------------------- 174
           +      AH+T+ + + S     YTFN+   + +                          
Sbjct: 122 KA--LLPAHQTIFYYTKSDD---YTFNFIYGEYSETTNVDQILQRRKRDEYGKSIYDKDL 176

Query: 175 ---------NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
                     + V +   W IP  +   +         +PTQKP  LL +I+  +T  GD
Sbjct: 177 DGNIIPSGGKKGVPLSDVWEIPYLNPKAK-----ERVGYPTQKPLLLLEQIIKIATNEGD 231

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           +ILDPF GSGT+   A  L R+ +GI++  D +++  KR++   P+      +  G+ + 
Sbjct: 232 LILDPFCGSGTTLVAASLLGRNSVGIDISTDAVELTKKRLSD--PIKTNSNLLTKGRDSY 289

Query: 286 PRVAFNLL 293
             V  ++L
Sbjct: 290 KNVDESVL 297


>gi|317181656|dbj|BAJ59440.1| DNA methylase [Helicobacter pylori F57]
          Length = 369

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 109/288 (37%), Gaps = 40/288 (13%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
           +      ++  N I    D+I   +S+  L+KLP   +D++   PPYN  +N    +  +
Sbjct: 105 ESYKKEFSKETNEIQSCLDQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGINYSATQDAN 164

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW-----VIGSY-HNIFRIGT 116
                          ++ Y     A    C RVLK  G +      +   Y      I  
Sbjct: 165 --------------LWQEYFNTLFAIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISK 210

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL-IWASPSPKAKGYTFNYDALKAAN 175
              +       +I+W K+N         +   + T   W SP+     Y++ +  +   N
Sbjct: 211 FFIDEGLIWKGEILWEKNN---------YNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKN 261

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKL----------HPTQKPEALLSRILVSSTKPGD 225
              +      I I     +                   H    PE L+ R L   +   D
Sbjct: 262 NLKKEGDKDSIDITDDEFKKWVYGKWNFAPERNMKQYGHDAMFPEELVKRCLKLFSYQND 321

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           I+LDPF G+GT+  VAK+L R FIGI++ + Y ++A  R+  V  L N
Sbjct: 322 IVLDPFNGAGTTTKVAKQLGRRFIGIDISEKYCEVARARLKEVTNLFN 369


>gi|1171049|sp|P14243|MTC9_CITFR RecName: Full=Modification methylase Cfr9I; Short=M.Cfr9I; AltName:
           Full=N(4)- cytosine-specific methyltransferase Cfr9I
 gi|40464|emb|CAA34887.1| DNA (Cytosine-4)-Methyltransferase [Citrobacter freundii]
          Length = 300

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 71/282 (25%), Positives = 118/282 (41%), Gaps = 57/282 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + +G+++SVL +LP+ SV  I   PPY    +             + +     SS   +
Sbjct: 27  TLFEGDALSVLRRLPSGSVRCIVTSPPYWGLRDY-----------GIDEQIGLESSMTQF 75

Query: 82  DAFTRAWLLACRRVLKPNGTLW-VIGSYHN------------------------------ 110
                      +RVL  +GTLW  IG  +                               
Sbjct: 76  LNRLVTIFSEAKRVLTDDGTLWVNIGDGYTSGNRGYRAPDKKNPARAMAVRPDTPEGLKP 135

Query: 111 ------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
                  +R+   LQ   +++ +DIVW K N MP     R   +HE L   +    ++ Y
Sbjct: 136 KDLIGIPWRLAFALQEDGWYLRSDIVWNKPNAMPESVKDRPTRSHEFLFMLTK---SEKY 192

Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
            ++++A++   +    R+   +        +  K     H    P  L+   +++STKPG
Sbjct: 193 YYDWEAVREEKDSGGFRNRRTV------WNVNTKPFAGAHFATFPTELIRPCILASTKPG 246

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           D +LDPFFGSGT G V ++  R ++GIE+  +Y+DIA  R+ 
Sbjct: 247 DYVLDPFFGSGTVGVVCQQEDRQYVGIELNPEYVDIAVNRLQ 288


>gi|167566406|ref|ZP_02359322.1| N-6 adenine-specific DNA methylase [Burkholderia oklahomensis
           EO147]
          Length = 282

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 71/262 (27%), Positives = 122/262 (46%), Gaps = 33/262 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++   + ++    LP  S+DLI ADPPY L  +        S               + +
Sbjct: 33  ELHNRDFLTEAASLPDASIDLIVADPPYGLGKDYGNDSDKRSG--------------DEH 78

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+TR WL      LK +G+++V  ++     I + L+     ++N+I+W +  P     
Sbjct: 79  LAWTREWLDLAIPKLKSSGSMYVFCTWQYAPEIFSFLK-TKLTMVNEIIWDRRVPSMGGT 137

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR---------SDWL------I 186
            RRF + H+ + + +    +KGY F+ D ++   +    +         S WL       
Sbjct: 138 TRRFTSVHDNIGFFA---VSKGYYFDLDPVRIPYDADTKKARSRKLFEGSKWLELGYNPK 194

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            + S S   R       HPTQKP  ++ R++++S  PG  +LDPF GSGT+     + RR
Sbjct: 195 DVWSVSRLHRQHAERVDHPTQKPLEIVERMVLASCPPGGRVLDPFMGSGTTAVACARQRR 254

Query: 247 SFIGIEMKQDYIDIATKRIASV 268
            F+G E+ + Y  IA +R+A++
Sbjct: 255 DFVGYEINESYCAIAHERVAAL 276


>gi|67921543|ref|ZP_00515061.1| DNA methylase N-4/N-6 [Crocosphaera watsonii WH 8501]
 gi|67856655|gb|EAM51896.1| DNA methylase N-4/N-6 [Crocosphaera watsonii WH 8501]
          Length = 319

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 77/333 (23%), Positives = 125/333 (37%), Gaps = 75/333 (22%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KF 75
            +  +KIIKG+ + +L++LP KS+DLI  DPPY                  V   WD ++
Sbjct: 1   MKHINKIIKGDCLEILQELPDKSIDLIVLDPPY---------------WKVVQQKWDYQW 45

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS- 134
            + E Y  +   WL    RV+K +G+L++ G   N+F +   +  L F     I+  K  
Sbjct: 46  RTEEDYQKWCLQWLTEIARVIKLSGSLYLFGYLRNLFYLYEPIIKLGFNFRQQIIIDKGI 105

Query: 135 ---NPMPNFRGRRFQNAHETLIWA------------------------------------ 155
                      + F N  E+L++                                     
Sbjct: 106 KAIGGRATKNHKMFPNVTESLLFFIYDSRPFIENFLKQRQKELGLTALEINKRLGVKSNG 165

Query: 156 ---------------SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
                           P+ +      N        ED+    +  + +      +   + 
Sbjct: 166 GGMWSLYTGNNILAQVPTREMWEKLENVLEFNYPYEDISSTFNIEMGLTDVWNDINFYEE 225

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           ++LHPTQKP  L+ RI+ +S+    I+LDPF GSG++      L R +IGIE +  YI+ 
Sbjct: 226 KRLHPTQKPVKLIERIIRASSHKNMIVLDPFMGSGSTAIACLNLNRYYIGIEKEDKYIEK 285

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
              RIA               K+ +    +N L
Sbjct: 286 INSRIAQ----DKSNQISREQKKQKTDNEYNQL 314


>gi|330399501|ref|YP_004030599.1| adenine-specific methyltransferase [Burkholderia rhizoxinica HKI
           454]
 gi|312170238|emb|CBW77277.1| Adenine-specific methyltransferase (EC 2.1.1.72) [Burkholderia
           rhizoxinica HKI 454]
          Length = 237

 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 57/255 (22%), Positives = 96/255 (37%), Gaps = 41/255 (16%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
            N+  +  + +  G+ +  + KL ++SVD +  DPPY +    +  R             
Sbjct: 18  SNAKEQTVNYLYHGDCLVAMPKLASESVDCVVTDPPYLVNYRDRGGRT------------ 65

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
               + ++ D +         RVLK +       S++   R     +   F I   +V+ 
Sbjct: 66  ---IANDSNDEWLAPAFAEMFRVLKRDAVCISFYSWNKADRFFLAWKAAGFRIAGHLVFT 122

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           KS        R     HE+    +                              PI    
Sbjct: 123 KSYSSKAGLVRY---QHESAYVLAK---------------------GRPPVLAQPIADVV 158

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
                  G + HPT+KP + L  ++ + T PGD +LDPF GSG++   A++L R +IGIE
Sbjct: 159 --PFPYSGNRHHPTEKPVSSLRTLIQAFTNPGDTVLDPFAGSGSTCVAARELGRRYIGIE 216

Query: 253 MKQDYIDIATKRIAS 267
           +   Y   A  R+ +
Sbjct: 217 LDARYFTAAKARLLA 231


>gi|237756015|ref|ZP_04584598.1| DNA methylase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691831|gb|EEP60856.1| DNA methylase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 267

 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 66/262 (25%), Positives = 115/262 (43%), Gaps = 31/262 (11%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N + ++ +++I G+++ +L+++P KS+DL    PPYN +     +  D    +   D   
Sbjct: 2   NELEKFINQVIHGDALEILKQIPDKSIDLGITSPPYNKKEKHGGWLVDKVRYNGYKD--- 58

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF-----WILND 128
              S E Y ++    L    RV K  G+     ++   +  G M+  L +     W +  
Sbjct: 59  -VMSEEEYQSWQVEVLNQLYRVTKEGGSF--FYNHKVRYEDGKMIHPLQWLLKTKWNIWQ 115

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
            +        N RG RF    E + W                 +  ++  ++ S W I  
Sbjct: 116 EIIWNRRIAGNIRGWRFWQVEERIYWLVKGKPK----------ELKSKHAKLTSVWDI-- 163

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGSGTSGAVAKKLRRS 247
                  R + G K HP   P  L +RI+ S     D I++DPF G+GT+   AK L + 
Sbjct: 164 -------RPEHGHKEHPAVFPIELPTRIISSILDENDGIVIDPFCGTGTTLVAAKLLGKK 216

Query: 248 FIGIEMKQDYIDIATKRIASVQ 269
           +IG+++ ++Y+D A KRI   +
Sbjct: 217 YIGVDISKEYVDYAKKRIEMAK 238


>gi|91777257|ref|YP_552465.1| putative modification methylase [Burkholderia xenovorans LB400]
 gi|91689917|gb|ABE33115.1| Putative modification methylase [Burkholderia xenovorans LB400]
          Length = 301

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 67/257 (26%), Positives = 120/257 (46%), Gaps = 27/257 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +++  + +S +  +P  S+DLI  DPPY L   G+ Y  D               + + +
Sbjct: 38  QLLNRDFLSDVANIPDGSIDLILCDPPYGL---GKDYGNDS-----------DMRTGDDF 83

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            ++TR WL      LKP+G+L++  ++     I + L+     ++N+I+W +  P     
Sbjct: 84  LSWTRGWLELAIPKLKPSGSLYIFCTWQYAPEIFSFLK-TKLTMINEIIWDRRVPSMGGT 142

Query: 142 GRRFQNAHETLIWASPSPKAK------GYTFNYDALKAANEDVQMRSDWL------IPIC 189
            RRF + H+ + + + S             ++    KA +  +   S WL        + 
Sbjct: 143 VRRFTSVHDNIGFFAVSKDYFFDLDPVRIPYDAATKKARSRKLFEGSKWLEVGYNPKDVW 202

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           S S   R       HPTQKP  ++ R++++S   G  +LDPF GSGT+     + +R F+
Sbjct: 203 SVSRLHRQHAERVAHPTQKPLEIVERMVLASCPKGGRVLDPFMGSGTTAVACARQQREFV 262

Query: 250 GIEMKQDYIDIATKRIA 266
           G E+ + Y  IA +R++
Sbjct: 263 GYEINESYCAIARERVS 279


>gi|237753191|ref|ZP_04583671.1| adenine specific DNA methyltransferase [Helicobacter winghamensis
           ATCC BAA-430]
 gi|229375458|gb|EEO25549.1| adenine specific DNA methyltransferase [Helicobacter winghamensis
           ATCC BAA-430]
          Length = 232

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 71/248 (28%), Positives = 114/248 (45%), Gaps = 23/248 (9%)

Query: 22  KIIKGNSISVLEKLPAKSV--DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K+   +S + ++++    V    I  DPPYN+  +                 WDK     
Sbjct: 2   KLYNADSYTFIQQMLENKVKVHHIITDPPYNISKSNNFPSMRQRRQGVDFGVWDKGFD-- 59

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                  +W+     +L  NG++ +  SY  I  I   L+N N  + + ++W+KSNPMP 
Sbjct: 60  -----LVSWIPQYAEILDKNGSMIIFCSYRFISFITQALENSNMIVKDVLIWQKSNPMPR 114

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
              RR+    E  +WA  S     + FN       ++   +RS +   + SG E+L    
Sbjct: 115 NTTRRYVQDLEFAVWAVKSGA--KWVFN-----KPSDVPYLRSIFTHALVSGKEKL---- 163

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
               HPTQK   L+  ++   T   +++LDPF GSG++GA   +L R FIGIE  + +  
Sbjct: 164 ---GHPTQKSLKLMKDLIQIHTNLNEVVLDPFMGSGSTGAACLELGREFIGIERDKKFFT 220

Query: 260 IATKRIAS 267
           +A KR+ S
Sbjct: 221 MAQKRLES 228


>gi|315231720|ref|YP_004072156.1| modification methylase [Thermococcus barophilus MP]
 gi|315184748|gb|ADT84933.1| modification methylase [Thermococcus barophilus MP]
          Length = 312

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 77/316 (24%), Positives = 142/316 (44%), Gaps = 32/316 (10%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+II G+ +  + KL    V L F DPP+N     + +  +               S E 
Sbjct: 4   DEIILGDCLEWIPKLKG--VHLSFLDPPFNQGKEYRFFNDN--------------LSEEE 47

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  + +  +    +V +  G ++ +    N   +  +L+   + + N I+W+        
Sbjct: 48  YWGWMKEVVREIYKVTEKGGAIYFMQREKNTEWVLRILRETGWTLQNLIIWK-KMASAVP 106

Query: 141 RGRRFQNAHETLIWASP-------------SPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
           +  RF  A++ + +A+               P A  + +  +      +      +    
Sbjct: 107 QRYRFNKAYQIIAFATKGKKPRVFNKLRVDYPLAPWHKYPRENGIYLTDVWDDIRELTSG 166

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
             +G E LR++ G+++H  Q P ALL RI++SST PGD++LDPF G+GT+  VAK+L+R 
Sbjct: 167 YFAGDEPLRDESGKRIHLQQSPVALLLRIILSSTMPGDLVLDPFAGTGTTLVVAKQLKRH 226

Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQI-LT 306
           ++GIE+   Y+++  KR++ ++   +I       + TE       + E+ L  P Q  L 
Sbjct: 227 YVGIEIDPHYVEVIKKRLSKLRKADDISRYREYYRFTENLEKIWPMPEKPLKIPKQKTLL 286

Query: 307 NAQ-GNISATVCADGT 321
           + +    S  +  DG 
Sbjct: 287 DVELSKHSKHILKDGR 302


>gi|283457686|ref|YP_003362271.1| adenine specific DNA methylase Mod [Rothia mucilaginosa DY-18]
 gi|283133686|dbj|BAI64451.1| adenine specific DNA methylase Mod [Rothia mucilaginosa DY-18]
          Length = 423

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 65/285 (22%), Positives = 120/285 (42%), Gaps = 35/285 (12%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLN-----------------GQLYRPDHSLV 65
           +++ +++  L +LP  +  +I+ DPP+N                     G   +   S +
Sbjct: 34  LVQADNLEYLRELPDGAFTVIYIDPPFNTGKKQTRRTLSAEASEKGDRTGFKGKSYSSTL 93

Query: 66  DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NF 123
             +    D   SFE Y AF    +    R+L  +GTL++   +  +  +  M   +    
Sbjct: 94  QTLASYND---SFEDYWAFLAPRIEQAHRLLAQDGTLYLHLDWREVHYVKIMCDMIFGRE 150

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN--------YDALKAAN 175
             +N+++W           RR+   H+ ++  +     + Y FN        Y A     
Sbjct: 151 NFINELIWAYDYGAK--STRRWPTKHDNILVYAKDH--RSYYFNTAEVDREPYMAPGLVT 206

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
           E+   R      +   +        +  +PTQKP  LL R++ +S++PGD +LD F GSG
Sbjct: 207 EEKASRGKLPTDVWWHTIVSPTGKEKTGYPTQKPTGLLRRMIAASSRPGDWVLDFFAGSG 266

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
           ++GA A +L R F+ ++     I++  KR+  V P+   E   + 
Sbjct: 267 STGAAAAQLGRKFVCVDQNPPAIEVMAKRLG-VDPVSFAEYRGVP 310


>gi|322434539|ref|YP_004216751.1| DNA methylase N-4/N-6 domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321162266|gb|ADW67971.1| DNA methylase N-4/N-6 domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 303

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 72/271 (26%), Positives = 118/271 (43%), Gaps = 28/271 (10%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD------ 73
            ++I+ G +++VL+ LPA S DLI+ DPP+N     Q  R   ++ DA  D         
Sbjct: 1   MNRIVLGENLAVLKTLPAHSADLIYIDPPFNTGKT-QFRRRMKTVTDAEGDRTGFGGRRF 59

Query: 74  -----------KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL- 121
                         SF+ Y  F R  ++  RR+L P G+L++      +     ML  + 
Sbjct: 60  RTEILDDGLAGYLDSFDDYIGFLRPRMIEARRILTPTGSLFLHVDPREVHYCKVMLDEVF 119

Query: 122 -NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN------YDALKAA 174
                 N+I+W           +R+   H+ L+W +  PK   +  N      Y A +  
Sbjct: 120 GRPCFQNEIIWAYDYGARTS--KRWPAKHDNLLWYTRDPKRFTFDLNATDRIPYMAPRLV 177

Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
                 R      +   +        +  + TQKP  +L RI+   ++PGD +LD F GS
Sbjct: 178 GAAKTARGKTPTDVWWHTIVSPTGKEKTGYATQKPVNMLERIVRVHSRPGDRVLDFFAGS 237

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           GT+G  A++  RSF+ I+   + I +  KR+
Sbjct: 238 GTTGEAAQRNDRSFLLIDQSPEAIKVMEKRL 268


>gi|166368612|ref|YP_001660885.1| putative methyltransferase [Microcystis aeruginosa NIES-843]
 gi|166090985|dbj|BAG05693.1| DNA-methyltransferase [Microcystis aeruginosa NIES-843]
          Length = 295

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 88/301 (29%), Positives = 139/301 (46%), Gaps = 38/301 (12%)

Query: 23  IIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           I  G+S+ +L  ++ + SVDLIF DPPYN+                  D +DK+ S   Y
Sbjct: 12  IFHGDSLPILSSEIASNSVDLIFLDPPYNIGK-------------HFADFYDKWESENDY 58

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    L  C R+LKP GTL+V+ S   +      L+     IL+ I+W   +      
Sbjct: 59  INWANQILDQCLRILKPQGTLYVMASTQAMPYFDLYLRQ-KMTILSRIIWHYDSSGVQAT 117

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR----SDWLIPICSGSERL-- 195
            + F + +E ++          YTFN   +K   +    R        IP    +E++  
Sbjct: 118 -KYFGSMYEPILHCVKDK--NNYTFNSKDIKIEAKTGAKRKLIDYRKAIPSQYNTEKVPG 174

Query: 196 ---------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                       D  + HP+QKPE+LL RI+++ST    I+LDPF G+ T+ AVAK+L R
Sbjct: 175 NVWYFPRVRYRMDEYENHPSQKPESLLERIILASTDKSGIVLDPFAGTFTAAAVAKRLGR 234

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILT 306
             I IE +++Y+ I  +RI   Q     E  +L  +++  R + N   E   +Q  + L 
Sbjct: 235 ISISIESQEEYLKIGLRRILGWQEYK--EEKLLPPQKSYSRKSENK-QESNFVQ--ESLF 289

Query: 307 N 307
           +
Sbjct: 290 D 290


>gi|255326978|ref|ZP_05368054.1| site-specific DNA-methyltransferase [Rothia mucilaginosa ATCC
           25296]
 gi|255296195|gb|EET75536.1| site-specific DNA-methyltransferase [Rothia mucilaginosa ATCC
           25296]
          Length = 423

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 123/296 (41%), Gaps = 41/296 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLN-----------------GQLYRPDHSLV 65
           +++ +++  L +LP  +  +I+ DPP+N                     G   +   S +
Sbjct: 34  LVQADNLEYLRELPDGAFTVIYIDPPFNTGKKQTRRTLSAEASEKGDRTGFKGKSYSSTL 93

Query: 66  DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NF 123
             +    D   SFE Y AF    +    R+L  +GTL++   +  +  +  M   +    
Sbjct: 94  QTLASYND---SFEDYWAFLAPRIEQAHRLLAQDGTLYLHLDWREVHYVKIMCDMIFGRE 150

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN--------YDALKAAN 175
             +N+++W           RR+   H+ ++  +   +   Y FN        Y A     
Sbjct: 151 NFINELIWAYDYGAK--STRRWPTKHDNILVYAKDHRC--YYFNTAEVDREPYMAPGLVT 206

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
           E+   R      +   +        +  +PTQKP  LL R++ +S++PGD +LD F GSG
Sbjct: 207 EEKASRGKLPTDVWWHTIVSPTGREKTGYPTQKPTGLLRRMIAASSRPGDWVLDFFAGSG 266

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRI-------ASVQPLGNIELTVLTGKRT 284
           ++GA A +L R F+ ++     I++  KR+       A  + +      + T KRT
Sbjct: 267 STGAAAAQLGRKFVCVDQNPPAIEVMAKRLGVDSVSFAEYRGVPRGASVLFTPKRT 322


>gi|308061664|gb|ADO03552.1| DNA methylase [Helicobacter pylori Cuz20]
          Length = 369

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 108/288 (37%), Gaps = 40/288 (13%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
           +      ++  N I    ++I   +S+  L+KLP   +D++   PPYN  +N    +  +
Sbjct: 105 ESYKKEFSKETNEIQSCLNQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGINYSATQDAN 164

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW-----VIGSY-HNIFRIGT 116
                          +  Y     A    C RVLK  G +      +   Y      I  
Sbjct: 165 --------------LWHEYFNTLFAIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISK 210

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL-IWASPSPKAKGYTFNYDALKAAN 175
              +       +I+W K+N         +   + T   W SP+     Y++ +  +   N
Sbjct: 211 FFIDEGLIWKGEILWEKNN---------YNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKN 261

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKL----------HPTQKPEALLSRILVSSTKPGD 225
              +      I I     +                   H    PE L+ R L   +   D
Sbjct: 262 NLKKEGDKDSIDITDDEFKKWVYGKWNFAPERNMKQYGHDAMFPEELVKRCLKLFSYQND 321

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           IILDPF G+GT+  VAK+L R FIGI++ + Y ++A  R+  V  L N
Sbjct: 322 IILDPFNGAGTTTKVAKQLGRRFIGIDISEKYCEVARARLKEVTNLFN 369


>gi|172039381|ref|YP_001805882.1| putative DNA methylase N-4/N-6 [Cyanothece sp. ATCC 51142]
 gi|171700835|gb|ACB53816.1| putative DNA methylase N-4/N-6 [Cyanothece sp. ATCC 51142]
          Length = 295

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 71/307 (23%), Positives = 121/307 (39%), Gaps = 71/307 (23%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KF 75
            ++ ++II+ +   +L++LP KSVDLI  DPPY                  +   WD ++
Sbjct: 1   MKYLNQIIQRDCTEILQELPDKSVDLIILDPPY---------------WKVIQQKWDYQW 45

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS- 134
            + E Y  +   WL    RV+K +G+L++ G   N+F +   + +L F     I+  K  
Sbjct: 46  RTEEDYKEWCLQWLSEISRVIKLSGSLYLFGYLRNLFYLYEPIIDLGFNFRQQIIIDKGM 105

Query: 135 ---NPMPNFRGRRFQNAHETLIWASPS--------------------------------- 158
              +       + F N  E+L++   +                                 
Sbjct: 106 KAISGRATKNYKMFPNVTESLLFFIYNSRPFIKQFLKQRQKELGLTALEINKRLGVKSNG 165

Query: 159 -PKAKGYTFNYD-----------------ALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
                 YT N                         ED+    +  + +      +   + 
Sbjct: 166 GGMWSLYTGNNILAQVPTKEMWEKLQDILEFNYPYEDISATFNIEMGVTDVWNDINFYEE 225

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           ++ HPTQKP  L+ RI+ +S++   I+LDPF GSG++      L R +IGIE ++ YID 
Sbjct: 226 KRFHPTQKPVKLMERIIRASSQENMIVLDPFMGSGSTAIACLNLNRHYIGIEKEKKYIDK 285

Query: 261 ATKRIAS 267
              RI +
Sbjct: 286 INSRIEN 292


>gi|21232398|ref|NP_638315.1| site-specific DNA-methyltransferase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|21114176|gb|AAM42239.1| site-specific DNA-methyltransferase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 234

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 66/255 (25%), Positives = 102/255 (40%), Gaps = 30/255 (11%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDAVT-----DS 71
           K+++++G+++++L  L A S D +  DPPY    L    +   P    V         D 
Sbjct: 2   KNQLLQGDALTILPTLEANSFDALITDPPYASGGLHAAARAKPPSQKYVQGGGAQLHADF 61

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
                   ++  +   WL  C RVLK    + +   +  +      LQ   F      VW
Sbjct: 62  VGDERDQRSHLKWMHLWLSECARVLKDGAPVLLFTDWRQLPLTTDALQIAGFTWRGITVW 121

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
            K+  +    G RF+N  E ++W S                          D   P+  G
Sbjct: 122 DKTEGVRPQLG-RFRNQAEYIVWGSKGNM--------------------PLDRRAPVLPG 160

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
             R   +  +K H T KP  L+ R LV   + G  ILDPF GSGT+   A+     + G+
Sbjct: 161 VIRESVRKADKHHLTGKPTELM-RQLVRICEAGGRILDPFAGSGTTLVAAELEGYGWTGV 219

Query: 252 EMKQDYIDIATKRIA 266
           E+   Y D+A  R+A
Sbjct: 220 ELTSHYSDVARTRLA 234


>gi|168491335|ref|ZP_02715478.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           CDC0288-04]
 gi|183574390|gb|EDT94918.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           CDC0288-04]
          Length = 392

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 73/302 (24%), Positives = 132/302 (43%), Gaps = 36/302 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++KG+++ +L+ + + S+DLI+ DPP+  Q   +L    + +     D+W   +S E Y
Sbjct: 2   TVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNIMYS-FEDTW---TSIEDY 57

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPN 139
             F    L  C+RVLK +G+++V         I  +L N+       ++I+W       +
Sbjct: 58  KEFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGADMFQSEIIWNYKRWSNS 117

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ-------------------- 179
            +G    N H+ + + S S   K  T   +     N D                      
Sbjct: 118 KKG--LLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTIYKVDNNG 175

Query: 180 -------MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
                       L  + +             +PTQKP  LL +I+  +T   D++LDPF 
Sbjct: 176 NYILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDVVLDPFC 235

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV-QPLGNIELTVLTGKRTEPRVAFN 291
           GSGT+   +K L R+++GI++ ++ I+I  +R+ +V +   N+    +   RT+     N
Sbjct: 236 GSGTTLVASKILNRNYMGIDLSEEAINITQQRLENVIKTSSNLLNKGIEAYRTKTEEEEN 295

Query: 292 LL 293
           +L
Sbjct: 296 IL 297


>gi|317177128|dbj|BAJ54917.1| DNA methylase [Helicobacter pylori F16]
          Length = 369

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 66/288 (22%), Positives = 108/288 (37%), Gaps = 40/288 (13%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
           +      ++  N I    ++I   +S+  L+KLP   +D++   PPYN  +N    +  +
Sbjct: 105 ESYKKEFSKETNEIQSCLNQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGINYSATQDTN 164

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW-----VIGSY-HNIFRIGT 116
                          ++ Y     A    C RVLK  G +      +          I  
Sbjct: 165 --------------LWQEYFNTLFAIFKECIRVLKSGGRIIVNIQPMFSDCIPTHHFISK 210

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL-IWASPSPKAKGYTFNYDALKAAN 175
              +       +I+W K+N         +   + T   W SP+     Y++ +  +   N
Sbjct: 211 FFIDEGLIWKGEILWEKNN---------YNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKN 261

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKL----------HPTQKPEALLSRILVSSTKPGD 225
              +      I I     +                   H    PE L+ R L   +   D
Sbjct: 262 NLKKEGDKDSIDITDDEFKKWVYGKWNFAPERNMKQYGHDAMFPEELVKRCLKLFSYQND 321

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           IILDPF G+GT+  VAK+L R FIGI++ + Y ++A  R+  V  L N
Sbjct: 322 IILDPFNGAGTTTKVAKQLGRRFIGIDISEKYCEVARARLKEVTNLFN 369


>gi|15901283|ref|NP_345887.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae TIGR4]
 gi|14972920|gb|AAK75527.1| putative type II DNA modification methyltransferase [Streptococcus
           pneumoniae TIGR4]
          Length = 396

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 74/302 (24%), Positives = 132/302 (43%), Gaps = 36/302 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++KG+++ +L+ + + S+DLI+ DPP+  Q   +L    + +     D+W   +S E Y
Sbjct: 2   TVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNIMYS-FEDTW---TSIEDY 57

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPN 139
             F    L  C+RVLK +G+++V         I  +L N+       ++I+W       +
Sbjct: 58  KEFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGVDMFQSEIIWNYKRWSNS 117

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ-------------------- 179
            +G    N H+ + + S S   K  T   +     N D                      
Sbjct: 118 KKG--LLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTIYKVDNNG 175

Query: 180 -------MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
                       L  + +             +PTQKP  LL +I+  +T   DI+LDPF 
Sbjct: 176 NYILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDIVLDPFC 235

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV-QPLGNIELTVLTGKRTEPRVAFN 291
           GSGT+   +K L R+++GI++ ++ I+I  +R+ +V +   N+    +   RT+     N
Sbjct: 236 GSGTTLVASKILNRNYMGIDLSEEAINITQQRLENVIKTSSNLLNKGIEAYRTKTEEEEN 295

Query: 292 LL 293
           +L
Sbjct: 296 IL 297


>gi|15838904|ref|NP_299592.1| site-specific DNA-methyltransferase [Xylella fastidiosa 9a5c]
 gi|9107480|gb|AAF85112.1|AE004042_11 site-specific DNA-methyltransferase [Xylella fastidiosa 9a5c]
          Length = 243

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 65/254 (25%), Positives = 106/254 (41%), Gaps = 30/254 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDAVT-----DSWD 73
           ++ +G+++ +L  + + SVD +  DPPY    ++++ +        ++  T     D   
Sbjct: 10  RLHEGDALRLLCDIDSASVDAVITDPPYCSGAMRMSDRFQPTKKKYINNGTKHVAPDFDC 69

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
            F     + A++  WL  CRRV +P G L V   +  +  +   +Q+   W    IV   
Sbjct: 70  DFRDHRGFLAWSSQWLSECRRVTRPGGVLLVFTDWRMLPTLTDAVQSAG-WAWQGIVVWD 128

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
             P    +  RF++  E ++WAS          N  A                    G  
Sbjct: 129 KTPACRPQLGRFRSQAEFIVWASCGLM------NPKAHPV--------------TPVGVF 168

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
                  EK H   KP AL+  ++     P   ILDPF GSGT+G  A +    FIG+E+
Sbjct: 169 PTGTAPREKRHQVGKPLALMEHLIKI-VPPASTILDPFAGSGTTGVAALRAGHRFIGMEI 227

Query: 254 KQDYIDIATKRIAS 267
              Y D+A +R+A 
Sbjct: 228 APYYCDVAKQRLAD 241


>gi|148997514|ref|ZP_01825119.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP11-BS70]
 gi|168489597|ref|ZP_02713796.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           SP195]
 gi|168575894|ref|ZP_02721809.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           MLV-016]
 gi|307068084|ref|YP_003877050.1| adenine specific DNa methylase Mod [Streptococcus pneumoniae AP200]
 gi|147756569|gb|EDK63610.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP11-BS70]
 gi|183571882|gb|EDT92410.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           SP195]
 gi|183578247|gb|EDT98775.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           MLV-016]
 gi|301794465|emb|CBW36902.1| putative DNA modification methylase [Streptococcus pneumoniae
           INV104]
 gi|306409621|gb|ADM85048.1| Adenine specific DNA methylase Mod [Streptococcus pneumoniae AP200]
 gi|332073737|gb|EGI84216.1| DNA methylase family protein [Streptococcus pneumoniae GA17570]
 gi|332203261|gb|EGJ17329.1| DNA methylase family protein [Streptococcus pneumoniae GA47901]
          Length = 396

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 74/302 (24%), Positives = 132/302 (43%), Gaps = 36/302 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++KG+++ +L+ + + S+DLI+ DPP+  Q   +L    + +     D+W   +S E Y
Sbjct: 2   TVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNIMYS-FEDTW---TSIEDY 57

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPN 139
             F    L  C+RVLK +G+++V         I  +L N+       ++I+W       +
Sbjct: 58  KEFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGADMFQSEIIWNYKRWSNS 117

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ-------------------- 179
            +G    N H+ + + S S   K  T   +     N D                      
Sbjct: 118 KKG--LLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRNGNSKTIYKVDNNG 175

Query: 180 -------MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
                       L  + +             +PTQKP  LL +I+  +T   DI+LDPF 
Sbjct: 176 NYILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDIVLDPFC 235

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV-QPLGNIELTVLTGKRTEPRVAFN 291
           GSGT+   +K L R+++GI++ ++ I+I  +R+ +V +   N+    +   RT+     N
Sbjct: 236 GSGTTLVASKILNRNYMGIDLSEEAINITQQRLENVIKTSSNLLNKGIEAYRTKTEEEEN 295

Query: 292 LL 293
           +L
Sbjct: 296 IL 297


>gi|148984771|ref|ZP_01818024.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP3-BS71]
 gi|149011671|ref|ZP_01832867.1| nicotinate phosphoribosyltransferase [Streptococcus pneumoniae
           SP19-BS75]
 gi|168483942|ref|ZP_02708894.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           CDC1873-00]
 gi|168486127|ref|ZP_02710635.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           CDC1087-00]
 gi|182684389|ref|YP_001836136.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae CGSP14]
 gi|194398500|ref|YP_002038079.1| type II DNA modification methyltransferase [Streptococcus
           pneumoniae G54]
 gi|221232165|ref|YP_002511318.1| DNA modification methylase [Streptococcus pneumoniae ATCC 700669]
 gi|225859198|ref|YP_002740708.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           70585]
 gi|225860791|ref|YP_002742300.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298229942|ref|ZP_06963623.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           str. Canada MDR_19F]
 gi|298255682|ref|ZP_06979268.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           str. Canada MDR_19A]
 gi|298502615|ref|YP_003724555.1| type II DNA modification methyltransferase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|303253831|ref|ZP_07339960.1| putative DNA modification methylase [Streptococcus pneumoniae
           BS455]
 gi|303259027|ref|ZP_07345006.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP-BS293]
 gi|303261711|ref|ZP_07347658.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP14-BS292]
 gi|303264380|ref|ZP_07350300.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae BS397]
 gi|303267450|ref|ZP_07353303.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae BS457]
 gi|303269308|ref|ZP_07355081.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae BS458]
 gi|307127001|ref|YP_003879032.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           670-6B]
 gi|18699604|gb|AAL78652.1|AF469000_1 XbaI methylase [Streptococcus pneumoniae]
 gi|147764102|gb|EDK71034.1| nicotinate phosphoribosyltransferase [Streptococcus pneumoniae
           SP19-BS75]
 gi|147922793|gb|EDK73909.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP3-BS71]
 gi|172042720|gb|EDT50766.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           CDC1873-00]
 gi|182629723|gb|ACB90671.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae CGSP14]
 gi|183570735|gb|EDT91263.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           CDC1087-00]
 gi|194358167|gb|ACF56615.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae G54]
 gi|220674626|emb|CAR69192.1| putative DNA modification methylase [Streptococcus pneumoniae ATCC
           700669]
 gi|225722056|gb|ACO17910.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           70585]
 gi|225727628|gb|ACO23479.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238210|gb|ADI69341.1| type II DNA modification methyltransferase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|301800290|emb|CBW32913.1| putative DNA modification methylase [Streptococcus pneumoniae
           OXC141]
 gi|301802166|emb|CBW34907.1| putative DNA moodification methylase [Streptococcus pneumoniae
           INV200]
 gi|302599204|gb|EFL66221.1| putative DNA modification methylase [Streptococcus pneumoniae
           BS455]
 gi|302637291|gb|EFL67779.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP14-BS292]
 gi|302639970|gb|EFL70426.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP-BS293]
 gi|302641138|gb|EFL71512.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae BS458]
 gi|302643011|gb|EFL73305.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae BS457]
 gi|302646192|gb|EFL76419.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae BS397]
 gi|306484063|gb|ADM90932.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           670-6B]
 gi|327389617|gb|EGE87962.1| DNA methylase family protein [Streptococcus pneumoniae GA04375]
 gi|332074753|gb|EGI85227.1| DNA methylase family protein [Streptococcus pneumoniae GA17545]
          Length = 396

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 74/302 (24%), Positives = 132/302 (43%), Gaps = 36/302 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++KG+++ +L+ + + S+DLI+ DPP+  Q   +L    + +     D+W   +S E Y
Sbjct: 2   TVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNIMYS-FEDTW---TSIEDY 57

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPN 139
             F    L  C+RVLK +G+++V         I  +L N+       ++I+W       +
Sbjct: 58  KEFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGADMFQSEIIWNYKRWSNS 117

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ-------------------- 179
            +G    N H+ + + S S   K  T   +     N D                      
Sbjct: 118 KKG--LLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTIYKVDNNG 175

Query: 180 -------MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
                       L  + +             +PTQKP  LL +I+  +T   DI+LDPF 
Sbjct: 176 NYILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDIVLDPFC 235

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV-QPLGNIELTVLTGKRTEPRVAFN 291
           GSGT+   +K L R+++GI++ ++ I+I  +R+ +V +   N+    +   RT+     N
Sbjct: 236 GSGTTLVASKILNRNYMGIDLSEEAINITQQRLENVIKTSSNLLNKGIEAYRTKTEEEEN 295

Query: 292 LL 293
           +L
Sbjct: 296 IL 297


>gi|225854874|ref|YP_002736386.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           JJA]
 gi|225723405|gb|ACO19258.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           JJA]
          Length = 405

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 74/302 (24%), Positives = 132/302 (43%), Gaps = 36/302 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++KG+++ +L+ + + S+DLI+ DPP+  Q   +L    + +     D+W   +S E Y
Sbjct: 2   TVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNIMYS-FEDTW---TSIEDY 57

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPN 139
             F    L  C+RVLK +G+++V         I  +L N+       ++I+W       +
Sbjct: 58  KEFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGADMFQSEIIWNYKRWSNS 117

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ-------------------- 179
            +G    N H+ + + S S   K  T   +     N D                      
Sbjct: 118 KKG--LLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTIYKVDNNG 175

Query: 180 -------MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
                       L  + +             +PTQKP  LL +I+  +T   DI+LDPF 
Sbjct: 176 NYILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDIVLDPFC 235

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV-QPLGNIELTVLTGKRTEPRVAFN 291
           GSGT+   +K L R+++GI++ ++ I+I  +R+ +V +   N+    +   RT+     N
Sbjct: 236 GSGTTLVASKILNRNYMGIDLSEEAINITQQRLENVIKTSSNLLNKGIEAYRTKTEEEEN 295

Query: 292 LL 293
           +L
Sbjct: 296 IL 297


>gi|148993008|ref|ZP_01822602.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP9-BS68]
 gi|169834116|ref|YP_001694863.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           Hungary19A-6]
 gi|225857062|ref|YP_002738573.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           P1031]
 gi|147928209|gb|EDK79226.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP9-BS68]
 gi|168996618|gb|ACA37230.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           Hungary19A-6]
 gi|225725859|gb|ACO21711.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           P1031]
          Length = 396

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 69/276 (25%), Positives = 122/276 (44%), Gaps = 35/276 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++KG+++ +L+ + + S+DLI+ DPP+  Q   +L    + +     D+W   +S E Y
Sbjct: 2   TVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNIMYS-FEDTW---TSIEDY 57

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPN 139
             F    L  C+RVLK +G+++V         I  +L N+       ++I+W       +
Sbjct: 58  KEFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGADMFQSEIIWNYKRWSNS 117

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ-------------------- 179
            +G    N H+ + + S S   K  T   +     N D                      
Sbjct: 118 KKG--LLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTIYKVDNNG 175

Query: 180 -------MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
                       L  + +             +PTQKP  LL +I+  +T   DI+LDPF 
Sbjct: 176 NYILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDIVLDPFC 235

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           GSGT+   +K L R+++GI++ ++ I+I  +R+ +V
Sbjct: 236 GSGTTLVASKILNRNYMGIDLSEEAINITQQRLENV 271


>gi|167044904|gb|ABZ09571.1| putative DNA methylase [uncultured marine crenarchaeote
           HF4000_APKG8D22]
          Length = 255

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 111/248 (44%), Gaps = 4/248 (1%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            +KI   + I  ++ +P + +DL+  DPP+ +    +    + +    ++   +     E
Sbjct: 1   MNKIYNKDCIVGMKAIPNEKIDLVITDPPFAINFKAKKANYNRTASRVLSGYHE--IKVE 58

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y  FT AW+    R+LK +G+++V   ++N+  I T L +  F  +N I+W+    +  
Sbjct: 59  DYYDFTNAWMYEIYRILKKSGSMYVFSGWNNLKDILTALDDNGFTTINHIIWKYQFGVVT 118

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
            +     + H   +      +       +      ++   +       +   +      D
Sbjct: 119 SKKFVTSHYHCLFVCKDNKKRKFFPYSRFKKNAKTSDGRSLHYKDKEDVWIINREYWTGD 178

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
            +   PT+ P  ++ +IL  S++  D++LDPF GSG    ++K L R ++G E+ + Y D
Sbjct: 179 DKT--PTKLPAEIIKKILQYSSQKTDLVLDPFLGSGQVAVISKMLGRRYLGFEIVKPYYD 236

Query: 260 IATKRIAS 267
            ATKRI  
Sbjct: 237 FATKRIQK 244


>gi|297566253|ref|YP_003685225.1| DNA methylase N-4/N-6 domain-containing protein [Meiothermus
           silvanus DSM 9946]
 gi|296850702|gb|ADH63717.1| DNA methylase N-4/N-6 domain protein [Meiothermus silvanus DSM
           9946]
          Length = 284

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 70/272 (25%), Positives = 117/272 (43%), Gaps = 26/272 (9%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT------------ 69
           +II   +++ L+ LP  +  LI+ DPP+N     Q  R   +  DA              
Sbjct: 3   RIILAENLAYLQTLPDGAFPLIYIDPPFNTGRI-QSRRRIRAKSDANGTRGGFGGRRYQV 61

Query: 70  ---DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFW 124
              DS     S + + AF    L    RVL  NG+ ++   Y  I     ++  +     
Sbjct: 62  ELLDSPVYADSHQDFLAFLEPRLQEGYRVLSENGSFFLHLDYREIHYAKVLMDQIFGRES 121

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN------YDALKAANEDV 178
            +N+I+W            R+   H+T++W + +P+   + +       Y A   A  + 
Sbjct: 122 FINEIIWAYDFGGRP--KNRWPAKHDTILWYAKNPRRYTFHYTEIDRIPYMAPNLAGREK 179

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
             R      +   +    N   +  +PTQKP  LL RI+   + PGDI+LD F GSGT+G
Sbjct: 180 ARRGKVPTDVWWQTIVPTNSKEKTGYPTQKPLKLLERIIRVHSNPGDIVLDFFAGSGTTG 239

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
             A +L R F+ ++   + + I  +R+A  +P
Sbjct: 240 EAAARLGRGFVLVDHHPEAVQIMAQRLAFAKP 271


>gi|206479999|ref|YP_002235510.1| putative methyltransferase [Burkholderia cenocepacia J2315]
 gi|195945155|emb|CAR57782.1| putative methyltransferase [Burkholderia cenocepacia J2315]
          Length = 217

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 90/243 (37%), Gaps = 41/243 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+ +  + KL  +SVD I  DPPY +       R   S+ + V   W          
Sbjct: 4   LYNGDCLVAMPKLAPESVDCIVTDPPYLVNFRD---RSGRSIANDVNGDW---------- 50

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
                      RVLK +        ++ +       +   F +    V+ KS        
Sbjct: 51  --LAPAFAEMFRVLKRDAVCISFYGWNKVDLFFDAWKAAGFRVAGHFVFTKSYASKAGLV 108

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +     HE+    +    A       D +                            G +
Sbjct: 109 KY---QHESAYLLAKGRPAAPAAPIADVMPFPY-----------------------SGNR 142

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPT+KP A L  ++ + T+PGD++LDPF GSG++   A++L R +IGIE+   Y   A 
Sbjct: 143 HHPTEKPVAALRTLISAFTQPGDVVLDPFAGSGSTCVAARELGRRYIGIELDPTYFAAAK 202

Query: 263 KRI 265
            R+
Sbjct: 203 ARL 205


>gi|256367550|ref|YP_003108111.1| hypothetical protein YcdB [Escherichia coli]
 gi|228480805|gb|ACQ42131.1| hypothetical protein YcdB [Escherichia coli]
          Length = 227

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 62/254 (24%), Positives = 107/254 (42%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +   G   R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRG---RQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R  +  +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P  +G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPALPQKPLPDVQGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|15903330|ref|NP_358880.1| type II DNA modification (methyltransferase [Streptococcus
           pneumoniae R6]
 gi|116516980|ref|YP_816726.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae D39]
 gi|15458929|gb|AAL00091.1| DNA modification methyltransferase [Streptococcus pneumoniae R6]
 gi|116077556|gb|ABJ55276.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae D39]
          Length = 392

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 74/302 (24%), Positives = 132/302 (43%), Gaps = 36/302 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++KG+++ +L+ + + S+DLI+ DPP+  Q   +L    + +     D+W   +S E Y
Sbjct: 2   TVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNIMYS-FEDTW---TSIEDY 57

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPN 139
             F    L  C+RVLK +G+++V         I  +L N+       ++I+W       +
Sbjct: 58  KEFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGADMFQSEIIWNYKRWSNS 117

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ-------------------- 179
            +G    N H+ + + S S   K  T   +     N D                      
Sbjct: 118 KKG--LLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTIYKVDNNG 175

Query: 180 -------MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
                       L  + +             +PTQKP  LL +I+  +T   DI+LDPF 
Sbjct: 176 NYILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDIVLDPFC 235

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV-QPLGNIELTVLTGKRTEPRVAFN 291
           GSGT+   +K L R+++GI++ ++ I+I  +R+ +V +   N+    +   RT+     N
Sbjct: 236 GSGTTLVASKILNRNYMGIDLSEEAINITQQRLENVIKTSSNLLNKGIEAYRTKTEEEEN 295

Query: 292 LL 293
           +L
Sbjct: 296 IL 297


>gi|304389659|ref|ZP_07371619.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304327063|gb|EFL94301.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 291

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 75/281 (26%), Positives = 117/281 (41%), Gaps = 43/281 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYN-----------------------LQLNGQL 57
           + ++ G+++ VLE LP +S  LI+ DPP+N                       +   GQ 
Sbjct: 12  NLVVAGDNLPVLELLPDESFQLIYIDPPFNTGKVQSRQSLKTVRTDVPVAGSRVGFQGQT 71

Query: 58  YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
           Y      V A  D      SF  Y  F    L    R+L P GTL++   Y  +     +
Sbjct: 72  YETVRGKVTAYND------SFSDYWGFLEPRLEQAWRLLAPTGTLYLHLDYREVHYAKVL 125

Query: 118 LQNL--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN-------- 167
           L  L      LN+I+W           R++   H+ ++        K Y F+        
Sbjct: 126 LDALFGRDCFLNEIIWAYDYGG--RSKRKWPAKHDNILVYVKDQ--KQYYFDSDSVDREP 181

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
           Y A      +   R      +   +        +  + TQKPE +L RI+ +S++PGD +
Sbjct: 182 YMAPGLVTPEKAARGKLPTDVWWHTIVSPTGKEKTGYATQKPEGILRRIVQASSRPGDWV 241

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           LD F GSGT+GAVA  L R F+ I+   + I+I  +R++  
Sbjct: 242 LDFFAGSGTTGAVAGTLERRFVLIDENPEAIEIMRRRLSRA 282


>gi|332673157|gb|AEE69974.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori 83]
          Length = 369

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 108/288 (37%), Gaps = 40/288 (13%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
           +      ++  N I    D+I   +S+  L+ LP   +D++   PPYN  +N    +  +
Sbjct: 105 ESYKKEFSKETNEIQSCLDQIYCEDSLEFLKNLPNNCIDIVLTSPPYNFGINYSATQDAN 164

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW-----VIGSY-HNIFRIGT 116
                          ++ Y     A    C RVLK  G +      +   Y      I  
Sbjct: 165 --------------LWQEYFNTLFAIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISK 210

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL-IWASPSPKAKGYTFNYDALKAAN 175
              +       +I+W K+N         +   + T   W SP+     Y++ +  +   N
Sbjct: 211 FFIDEGLIWKGEILWEKNN---------YNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKN 261

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKL----------HPTQKPEALLSRILVSSTKPGD 225
              +      I I     +                   H    PE L+ R L   +   D
Sbjct: 262 NLKKEGDKDSIDITDDEFKKWVYGKWNFAPERNMKQYGHDAMFPEELVKRCLKLFSYQND 321

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           IILDPF G+GT+  VAK+L R FIGI++ + Y ++A  R+  V  L N
Sbjct: 322 IILDPFNGAGTTTKVAKQLGRRFIGIDISEKYCEVARARLKEVTNLFN 369


>gi|332297012|ref|YP_004438934.1| DNA methylase N-4/N-6 domain protein [Treponema brennaborense DSM
           12168]
 gi|332180115|gb|AEE15803.1| DNA methylase N-4/N-6 domain protein [Treponema brennaborense DSM
           12168]
          Length = 337

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 80/272 (29%), Positives = 128/272 (47%), Gaps = 36/272 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+   VL +LPA+  DL+  DPPYNL       R   +                 Y 
Sbjct: 68  LFCGDLFDVLPRLPAEFADLLILDPPYNLDKTFDGMRFSAT-------------DHRQYS 114

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           A+  +W       LKPNG+L++ G + +   +  +L+  +  ILN I+W++       R 
Sbjct: 115 AYLESWFTPLLETLKPNGSLYLCGDWKSTGSLFLLLEK-HAHILNRIIWQREKGRGALRN 173

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALK------AANEDVQMRSDWLIP-------IC 189
             ++N  E + +A  SP+A+ Y F+ +A+K      A   +     DW            
Sbjct: 174 --WKNNCEDIWFAVKSPQAE-YYFDAEAVKQKRRVIAPYRENGAPKDWTESDGGKYRLTS 230

Query: 190 SGSER------LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           +G+          +      HPTQKPE LL++++++S  PG ++ DPF GSGT+   AKK
Sbjct: 231 AGNFWDDITVPYWSMKENTPHPTQKPEKLLAKLILASCPPGGMVFDPFAGSGTTLTAAKK 290

Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L R F GIE  ++Y   A KR+A  +   +I+
Sbjct: 291 LGRRFCGIERSEEYCLFARKRLALAESDRSIQ 322


>gi|254388731|ref|ZP_05003964.1| DNA methylase [Streptomyces clavuligerus ATCC 27064]
 gi|294813343|ref|ZP_06771986.1| Putative DNA methylase [Streptomyces clavuligerus ATCC 27064]
 gi|326441721|ref|ZP_08216455.1| DNA methylase [Streptomyces clavuligerus ATCC 27064]
 gi|197702451|gb|EDY48263.1| DNA methylase [Streptomyces clavuligerus ATCC 27064]
 gi|294325942|gb|EFG07585.1| Putative DNA methylase [Streptomyces clavuligerus ATCC 27064]
          Length = 249

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 63/256 (24%), Positives = 105/256 (41%), Gaps = 33/256 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ------LNGQLYRPDHSLVDAVTD---SW 72
            + +G++++VL+ LP +SVD +  DPPYN           +  R  ++  DA  D     
Sbjct: 4   TLHRGDALTVLKSLPDESVDAVITDPPYNSGGRTSSERTARTARAKYTSGDAGHDLANFP 63

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
            +     +Y A+  A L    R  + +  + V   +         LQ   +     I W 
Sbjct: 64  GENRDQRSYRAWLTALLTESYRAAREHAVVMVFTDWRQEPTTSDALQMAGWTWSGTIPWI 123

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K    P   G +  +  E ++W       K                    D  +P   G 
Sbjct: 124 KPASRPRKGGPKQDS--EFILWGVKGTLDK------------------TRDLYLP---GH 160

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
                   +++H TQKP  ++ +++  + +PG  +LDPF GSGT+G  A    RSF+G+E
Sbjct: 161 YIASQPRKDRVHITQKPVEVMRQLVQVA-RPGGTVLDPFTGSGTTGVAALLEGRSFVGVE 219

Query: 253 MKQDYIDIATKRIASV 268
           +   Y DIA +R+   
Sbjct: 220 LSDHYADIAEQRLREA 235


>gi|190572398|ref|YP_001970243.1| putative site-specific DNA-methyltransferase [Stenotrophomonas
           maltophilia K279a]
 gi|190010320|emb|CAQ43928.1| putative site-specific DNA-methyltransferase [Stenotrophomonas
           maltophilia K279a]
          Length = 236

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 69/255 (27%), Positives = 105/255 (41%), Gaps = 30/255 (11%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDAVT-----DSW 72
           +++I+G+++++L  LPA S D +  DPPY       + +   P+   + +       D  
Sbjct: 3   NELIQGDALTILPTLPANSFDALITDPPYASGGTHASARQRGPNEKYMQSGGPRLHADFP 62

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
                  ++ A+   WL  C RVL+    + +   +  +      LQ   F      VW 
Sbjct: 63  SDERDQRSHLAWMHLWLAQCNRVLRDGAPVLLFTDWRQLPLTTDALQCAGFTWRGVAVWD 122

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K+  +   RG RF N  E ++W S      G                       P   G 
Sbjct: 123 KTGGVRPQRG-RFSNQAEYVVWGSKGGMPLGR--------------------AAPTLPGV 161

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
            R   +  +K H T KP  L+ R LV   + G  ILDPF GSGT+   A+    S+ GIE
Sbjct: 162 FREAVRKADKHHLTGKPTDLM-RQLVRICEQGGRILDPFAGSGTTLVAAEAEGYSWTGIE 220

Query: 253 MKQDYIDIATKRIAS 267
           M   Y D+A  R+ S
Sbjct: 221 MTGHYFDVAKSRLPS 235


>gi|168493334|ref|ZP_02717477.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           CDC3059-06]
 gi|183576799|gb|EDT97327.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           CDC3059-06]
          Length = 392

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 69/276 (25%), Positives = 122/276 (44%), Gaps = 35/276 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++KG+++ +L+ + + S+DLI+ DPP+  Q   +L    + +     D+W   +S E Y
Sbjct: 2   TVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNIMYS-FEDTW---TSIEDY 57

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPN 139
             F    L  C+RVLK +G+++V         I  +L N+       ++I+W       +
Sbjct: 58  KEFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGADMFQSEIIWNYKRWSNS 117

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ-------------------- 179
            +G    N H+ + + S S   K  T   +     N D                      
Sbjct: 118 KKG--LLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTIYKVDNNG 175

Query: 180 -------MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
                       L  + +             +PTQKP  LL +I+  +T   DI+LDPF 
Sbjct: 176 NYILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDIVLDPFC 235

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           GSGT+   +K L R+++GI++ ++ I+I  +R+ +V
Sbjct: 236 GSGTTLVASKILNRNYMGIDLSEEAINITQQRLENV 271


>gi|21243368|ref|NP_642950.1| site-specific DNA-methyltransferase [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21108915|gb|AAM37486.1| site-specific DNA-methyltransferase [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 233

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 67/258 (25%), Positives = 103/258 (39%), Gaps = 35/258 (13%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL---------NGQLYRPDHSLVDAVTD 70
           K+++++G+++++L  L A S D +  DPPY                 Y  D    D V D
Sbjct: 2   KNQLLQGDALTILPTLEANSFDALITDPPYASGGLTAAARARPPSTKYCRDGGHADFVGD 61

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
             D+ S    +  +   WL  C RVLK    + +   +  +      LQ   F      V
Sbjct: 62  ERDQRS----HLKWMHLWLSECARVLKDGAPVLLFTDWRQLTLTTDALQIAGFTWRGITV 117

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W K+  +    G RF+N  E ++W S                          D   P+  
Sbjct: 118 WDKTEGVRPQLG-RFRNQAEYIVWGSKGNM--------------------PLDRRAPVLP 156

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           G  R   +  +K H T KP  L+ R LV   + G  +LDPF GSGT+   A+      +G
Sbjct: 157 GVIRESVRKADKHHLTGKPTELM-RQLVRICEAGGRVLDPFAGSGTTLVAAQLEGFEAVG 215

Query: 251 IEMKQDYIDIATKRIASV 268
           IEM   Y  +   R+ ++
Sbjct: 216 IEMTDQYATVTRDRLTAL 233


>gi|260751940|ref|YP_003232478.1| DNA modification methylase [Escherichia coli O26:H11 str. 11368]
 gi|257757303|dbj|BAI28803.1| DNA modification methylase [Escherichia coli O26:H11 str. 11368]
          Length = 227

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 62/254 (24%), Positives = 104/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I G+ + V+   P  +VD I  DPPY +       R   ++   V D W + +S E Y
Sbjct: 3   RFILGDCVRVMATFPDNAVDFILTDPPYLVGFRD---RSGRTIAGDVNDDWLQPASNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|315656957|ref|ZP_07909842.1| adenine specific DNA methylase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315492349|gb|EFU81955.1| adenine specific DNA methylase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 291

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 74/281 (26%), Positives = 117/281 (41%), Gaps = 43/281 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYN-----------------------LQLNGQL 57
           + ++ G+++ VLE+LP +S  LI+ DPP+N                       +   GQ 
Sbjct: 12  NLVVAGDNLPVLEQLPDESFQLIYIDPPFNTGKVQSRQSLKTVRSDAPVAGSRVGFQGQT 71

Query: 58  YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
           Y      V A  D      SF  Y  F    L    R+L P GTL++   Y  +     +
Sbjct: 72  YETVRGKVTAYND------SFSDYWGFLEPRLEQAWRLLAPTGTLYLHLDYREVHYAKVL 125

Query: 118 LQNL--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN-------- 167
           L  L      LN+I+W           R++   H+ ++        K Y F+        
Sbjct: 126 LDALFGRDCFLNEIIWAYDYGG--RSKRKWPAKHDNILVYVKDQ--KQYYFDSDSVDREP 181

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
           Y        +   R      +   +        +  + TQKPE +L RI+ +S++PGD +
Sbjct: 182 YMVPGLVTPEKAARGKLPTDVWWHTIVSPTGKEKTGYATQKPEGILRRIVQASSRPGDWV 241

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           LD F GSGT+GAVA  L R F+ I+   + I+I  +R++  
Sbjct: 242 LDFFAGSGTTGAVAGTLERRFVLIDENPEAIEIMRRRLSRA 282


>gi|218886404|ref|YP_002435725.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757358|gb|ACL08257.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 253

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 68/260 (26%), Positives = 103/260 (39%), Gaps = 40/260 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ------------LNGQLYRPDHSLVDAVT 69
            II+G++++VL +LP +SVD +  DPPY+                 Q      S    + 
Sbjct: 13  TIIQGDALTVLRELPGESVDAVVTDPPYSSGGMTLTARQADPAAKYQTSGTKRSYPAMLG 72

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
           D+ D+ S    +  +   WL  C R+ +    L V   +  +      +Q   +     +
Sbjct: 73  DNKDQRS----FTTWATLWLTECWRMARDGAPLLVFTDWRQLPSTTDAVQAAGWLWRGLV 128

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
           VW K +  P     R     E L++A     +                            
Sbjct: 129 VWHKPSARPLLGEFR--RDAEFLVYAVKRKASPA---------------------TRNCL 165

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
            G  R      EK+H T KP ALL  +L + T+PG ++LDPF G GT+G       R F+
Sbjct: 166 PGVLRHNVNPAEKVHLTGKPVALLRDLL-AVTQPGGLVLDPFTGGGTTGMACMATGRRFL 224

Query: 250 GIEMKQDYIDIATKRIASVQ 269
           GIE+   Y  IA  RIA+  
Sbjct: 225 GIELSPQYHRIAVDRIAAAH 244


>gi|28199209|ref|NP_779523.1| site-specific DNA-methyltransferase [Xylella fastidiosa Temecula1]
 gi|182681938|ref|YP_001830098.1| DNA methylase N-4/N-6 domain-containing protein [Xylella fastidiosa
           M23]
 gi|28057315|gb|AAO29172.1| site-specific DNA-methyltransferase [Xylella fastidiosa Temecula1]
 gi|182632048|gb|ACB92824.1| DNA methylase N-4/N-6 domain protein [Xylella fastidiosa M23]
 gi|307578197|gb|ADN62166.1| DNA methylase N-4/N-6 domain-containing protein [Xylella fastidiosa
           subsp. fastidiosa GB514]
          Length = 243

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 63/254 (24%), Positives = 104/254 (40%), Gaps = 30/254 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDAVT-----DSWD 73
           ++ +G+++ +L  + + SVD +  DPPY    +++  +        ++  T     D   
Sbjct: 10  RLHQGDALRLLCGIDSASVDAVITDPPYCSGAMRMADRFKPTKRKYINNGTKHVAPDFDC 69

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
            F     + A++  WL  CRRV +P G L V   +  +  +   +Q+   W    IV   
Sbjct: 70  DFRDHRGFLAWSSQWLSECRRVTRPGGVLLVFTDWRMLPTLTDAVQSAG-WAWQGIVVWD 128

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
             P    +  RF++  E ++WAS          N  A                    G  
Sbjct: 129 KTPACRPQLGRFRSQAEFIVWASCGLM------NPKAHPV--------------TPVGVF 168

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
                  EK H   KP AL+  ++     P   +LDPF GSGT+G  A +    FIG+E+
Sbjct: 169 ATGTAPREKRHQVGKPLALMEHLVKI-VPPASTVLDPFAGSGTTGVAALRAGHRFIGMEL 227

Query: 254 KQDYIDIATKRIAS 267
              Y D+  +R+A 
Sbjct: 228 SPWYCDVTKQRLAD 241


>gi|298346582|ref|YP_003719269.1| adenine-specific DNA-methyltransferase [Mobiluncus curtisii ATCC
           43063]
 gi|298236643|gb|ADI67775.1| site-specific DNA-methyltransferase (adenine-specific) [Mobiluncus
           curtisii ATCC 43063]
          Length = 432

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 60/262 (22%), Positives = 118/262 (45%), Gaps = 20/262 (7%)

Query: 21  DKIIKGNSISVLE-KLP--AKSVDLIFADPPYNLQLNG-----QLYRPDHSLVDAVTDSW 72
           ++I  G ++ V+   LP    SVD I+ DPP+N   +        +R D      V    
Sbjct: 48  NRIYVGENLQVMSGLLPQYEGSVDCIYIDPPFNSGTDYVQRIQTHHRGDSKRTITVKQYG 107

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIV 130
           D++ + + Y       L   RR L P GT+++   +H+   +  ++  +     ++N+IV
Sbjct: 108 DRWQTAD-YLQNLYERLTVLRRFLSPTGTIFLHCDWHSSATLRLIMDEVFGGRNLINEIV 166

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP--- 187
           W  ++       R F + H+T+++ + + +   +  +   +         R +   P   
Sbjct: 167 WAYASGGG--SRRAFGHKHDTILFYARNRRRYYFDPDAVRVAYNAAIAPKRRELFNPQGM 224

Query: 188 ----ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
               +   S    + D    +PTQKP  ++ R + ++  PG +++D F GSG++   A +
Sbjct: 225 VAPDVWQISRPPNHSDTWVGYPTQKPLEVMQRAIAAACPPGGLVMDCFAGSGSTLVAAAQ 284

Query: 244 LRRSFIGIEMKQDYIDIATKRI 265
           L R F+GIE     + +A +R+
Sbjct: 285 LGRRFLGIERNSLGVHLARRRL 306


>gi|270208491|ref|YP_003329265.1| DNA methylase family protein [Klebsiella pneumoniae]
 gi|283826853|ref|YP_003377724.1| DNA methylase family protein [Shigella sonnei]
 gi|218546527|gb|ACK98916.1| DNA methylase family protein [Klebsiella pneumoniae]
 gi|283466745|emb|CBI12406.1| DNA methylase family protein [Shigella sonnei]
          Length = 227

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 62/254 (24%), Positives = 102/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I G+ + V+   P  +VD I  DPPY +       R   ++   V D W + +S E Y
Sbjct: 3   RFILGDCVRVMATFPDNAVDFILTDPPYLVGFRD---RSGRTIAGDVNDDWLQPASNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ I R     +   F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRIDRFMAAWKRAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPALPQKPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|238029038|ref|YP_002913263.1| DNA methylase N-4/N-6 domain protein [Burkholderia glumae BGR1]
 gi|237880615|gb|ACR32943.1| DNA methylase N-4/N-6 domain protein [Burkholderia glumae BGR1]
          Length = 217

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 61/242 (25%), Positives = 92/242 (38%), Gaps = 41/242 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+ +  L KL  +SVD +  DPPY +       R   S+ + VTD W          
Sbjct: 4   LYHGDCLVALPKLAPESVDCVVTDPPYLVNFRD---RSGRSMANDVTDEW---------- 50

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
                      RVLK +        +  + R     +   F +   IV+ K+    +   
Sbjct: 51  --LDPAFAEIYRVLKRDTVCVSFYGWGKVDRFFQAWKRAGFRVCGHIVFTKTYGSKSGMV 108

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +    A   L    P   A                  +      P            G +
Sbjct: 109 KYQHEAAYVLGKGRPDAPANP----------------IADVQPFPYT----------GNR 142

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPT+KP A L  ++ + TKPGD +LDPF GSG++   A++L R +IGIE+ + Y   A 
Sbjct: 143 HHPTEKPVAALRTLIAAFTKPGDTVLDPFAGSGSTCVAARELGRRYIGIELDETYFAAAK 202

Query: 263 KR 264
            R
Sbjct: 203 AR 204


>gi|238764211|ref|ZP_04625164.1| DNA methylase [Yersinia kristensenii ATCC 33638]
 gi|238697624|gb|EEP90388.1| DNA methylase [Yersinia kristensenii ATCC 33638]
          Length = 262

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 59/255 (23%), Positives = 101/255 (39%), Gaps = 30/255 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV-TDSWDKFSSFE- 79
            +  GN++ +L  + + SVD +  DPPY+     +  R   +       +   +F  F+ 
Sbjct: 27  TLYCGNALEILPFIKSGSVDALITDPPYSSGATHKSGRTTTTPTSKYLNEENKRFEEFDG 86

Query: 80  ------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                 ++  +   W+    + +K  G   V   +  +     + Q   F     + W K
Sbjct: 87  ENMDARSWVLWCSLWMSHACKAVKAGGYSLVFTDWRQLPAATDVFQASGFVWRGIVAWNK 146

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
                      F++  E ++W S           +D                 P+     
Sbjct: 147 GRGSRTPHTGYFRHQCEYIVWGSKGKLKSSPNGPFDGCLT------------FPVI---- 190

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
                  +KLHPT KPE L++ ++ ++  P  IILDPF GSGT+G  A K    FIGIE 
Sbjct: 191 -----PSKKLHPTAKPEELMAELVKTA-NPNGIILDPFMGSGTTGVAALKTGCQFIGIES 244

Query: 254 KQDYIDIATKRIASV 268
            + Y ++A +R+ S 
Sbjct: 245 NEHYFEVAAQRLQST 259


>gi|255321947|ref|ZP_05363097.1| DNA methylase [Campylobacter showae RM3277]
 gi|255301051|gb|EET80318.1| DNA methylase [Campylobacter showae RM3277]
          Length = 299

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 65/302 (21%), Positives = 124/302 (41%), Gaps = 72/302 (23%)

Query: 21  DKIIKGNSISVLEKL-PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK-FSSF 78
           +KI   + +  +  L P +S+DLI ADPPY                  V + WD  + + 
Sbjct: 4   NKIYNMDCVEGINSLVPDESIDLIIADPPYF---------------KVVGEKWDYIWRTE 48

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           E Y  +++ W+    RV++  G+ ++ G +  + R+  +L++    +   I+  K     
Sbjct: 49  EDYLEWSKVWIKEAVRVIRIGGSFYLFGYFRMLSRLLPILEDAGLELRQQIILNKGMQAV 108

Query: 139 NFRGRR----FQNAHETLIWASPSP----------------------------------K 160
           + R  +    F N  E++++    P                                   
Sbjct: 109 SGRATKNYKIFPNVTESILFLYKDPKPFAKSFLRQRQKDLCLTAKEINEKLGVKSNGGGM 168

Query: 161 AKGYTFNYDALKAANEDVQMR----SDWLIPICSGSERLRNKDG-------------EKL 203
              YT      +   E++  +     D+ IP    S+    + G             ++ 
Sbjct: 169 WSIYTGKNVCKQLPTEELWNKLQIILDFDIPYSKISQTYNAQLGITDVWGDINFYSEKRF 228

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPTQKP+ L+ R++++S+  GDI+LDPF G G++        R++IG E+ ++Y D + +
Sbjct: 229 HPTQKPQKLIDRLVIASSNKGDIVLDPFMGGGSTAVSCVLNSRNYIGFELDKEYYDKSIE 288

Query: 264 RI 265
           R+
Sbjct: 289 RL 290


>gi|148990531|ref|ZP_01821666.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP6-BS73]
 gi|147924219|gb|EDK75317.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP6-BS73]
          Length = 325

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 71/300 (23%), Positives = 128/300 (42%), Gaps = 32/300 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++KG+++ +L+ + + S+DLI+ DPP+  Q   +L    + +     D+W   +S E Y
Sbjct: 2   TVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNIMYS-FEDTW---TSIEDY 57

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F    L  C+RVLK +G+++V         I  +L N+    +       +    +  
Sbjct: 58  KEFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGVDMFQSEIIWNYKRWSNS 117

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ---------------------- 179
            +   N H+ + + S S   K  T   +     N D                        
Sbjct: 118 KKGLLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTIYKVDNNGNY 177

Query: 180 -----MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
                     L  + +             +PTQKP  LL +I+  +T   DI+LDPF GS
Sbjct: 178 ILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDIVLDPFCGS 237

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV-QPLGNIELTVLTGKRTEPRVAFNLL 293
           GT+   +K L R+++GI++ ++ I+I  +R+ +V +   N+    +   RT+     N+L
Sbjct: 238 GTTLVASKILNRNYMGIDLSEEAINITQQRLENVIKTSSNLLNKGIEAYRTKTEEEENIL 297


>gi|149019387|ref|ZP_01834749.1| nicotinate phosphoribosyltransferase [Streptococcus pneumoniae
           SP23-BS72]
 gi|147931257|gb|EDK82236.1| nicotinate phosphoribosyltransferase [Streptococcus pneumoniae
           SP23-BS72]
          Length = 332

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 74/302 (24%), Positives = 132/302 (43%), Gaps = 36/302 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++KG+++ +L+ + + S+DLI+ DPP+  Q   +L    + +     D+W   +S E Y
Sbjct: 2   TVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNIMYS-FEDTW---TSIEDY 57

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPN 139
             F    L  C+RVLK +G+++V         I  +L N+       ++I+W       +
Sbjct: 58  KEFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGADMFQSEIIWNYKRWSNS 117

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ-------------------- 179
            +G    N H+ + + S S   K  T   +     N D                      
Sbjct: 118 KKG--LLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTIYKVDNNG 175

Query: 180 -------MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
                       L  + +             +PTQKP  LL +I+  +T   DI+LDPF 
Sbjct: 176 NYILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDIVLDPFC 235

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV-QPLGNIELTVLTGKRTEPRVAFN 291
           GSGT+   +K L R+++GI++ ++ I+I  +R+ +V +   N+    +   RT+     N
Sbjct: 236 GSGTTLVASKILNRNYMGIDLSEEAINITQQRLENVIKTSSNLLNKGIEAYRTKTEEEEN 295

Query: 292 LL 293
           +L
Sbjct: 296 IL 297


>gi|149007299|ref|ZP_01830957.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP18-BS74]
 gi|237650442|ref|ZP_04524694.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           CCRI 1974]
 gi|237821039|ref|ZP_04596884.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
           CCRI 1974M2]
 gi|147761103|gb|EDK68071.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP18-BS74]
 gi|332200872|gb|EGJ14944.1| DNA methylase family protein [Streptococcus pneumoniae GA41317]
 gi|332201882|gb|EGJ15952.1| DNA methylase family protein [Streptococcus pneumoniae GA47368]
          Length = 325

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 74/302 (24%), Positives = 132/302 (43%), Gaps = 36/302 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++KG+++ +L+ + + S+DLI+ DPP+  Q   +L    + +     D+W   +S E Y
Sbjct: 2   TVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNIMYS-FEDTW---TSIEDY 57

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPN 139
             F    L  C+RVLK +G+++V         I  +L N+       ++I+W       +
Sbjct: 58  KEFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGADMFQSEIIWNYKRWSNS 117

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ-------------------- 179
            +G    N H+ + + S S   K  T   +     N D                      
Sbjct: 118 KKG--LLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTIYKVDNNG 175

Query: 180 -------MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
                       L  + +             +PTQKP  LL +I+  +T   DI+LDPF 
Sbjct: 176 NYILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDIVLDPFC 235

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV-QPLGNIELTVLTGKRTEPRVAFN 291
           GSGT+   +K L R+++GI++ ++ I+I  +R+ +V +   N+    +   RT+     N
Sbjct: 236 GSGTTLVASKILNRNYMGIDLSEEAINITQQRLENVIKTSSNLLNKGIEAYRTKTEEEEN 295

Query: 292 LL 293
           +L
Sbjct: 296 IL 297


>gi|299136441|ref|ZP_07029624.1| DNA methylase N-4/N-6 domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298600956|gb|EFI57111.1| DNA methylase N-4/N-6 domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 278

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 67/284 (23%), Positives = 114/284 (40%), Gaps = 47/284 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYN--------------------LQLNGQLYR 59
            ++I+   +++ L  LP  SV LI+ DPP+N                    +   G+ YR
Sbjct: 1   MNRILHRENLTALRSLPDASVQLIYIDPPFNTGTTQRRARMKTVRDDAGDRIGFGGKRYR 60

Query: 60  PDH-SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
            +  ++    TD       F+ Y  F R  ++   RVL   G+L+       +     ML
Sbjct: 61  TEKLAIAPNYTDR------FDDYLGFLRPRMIEAHRVLSATGSLFFHVDPREVHYCKIML 114

Query: 119 QNL--------NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN--- 167
             +             N+I+W           +R+   H+ ++W +  P  K YTFN   
Sbjct: 115 DEVFTTPGVSGRACFQNEIIWAYDYGA--RSTKRWPAKHDNILWYTKDP--KDYTFNLEA 170

Query: 168 -----YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK 222
                Y A      +   R      +   +        +  +PTQKP  +L RI+   + 
Sbjct: 171 SDRIPYMAPGLVGAEKARRGKTPTDVWWHTIVSPTGKEKTGYPTQKPLGILERIVRVHSN 230

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           P D +LD F GSGT+G  A +  RS+I ++  ++ + +  KR+ 
Sbjct: 231 PDDTVLDFFAGSGTTGLAAARNGRSYILVDESKEAVTLMKKRLK 274


>gi|218441353|ref|YP_002379682.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
 gi|218174081|gb|ACK72814.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
          Length = 283

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 68/281 (24%), Positives = 117/281 (41%), Gaps = 45/281 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I   + +  + KLP + +++    PPYN+                    ++   S + Y 
Sbjct: 20  IYNLDCLEGMAKLPNEIINMTVTSPPYNIGK-----------------EYEDILSLDEYL 62

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM-------LQNLNFWILNDIVWRKSN 135
           A+ + W+    R+   NG+ W+   Y +I +              + F+++ +IVW    
Sbjct: 63  AWCKRWIQEVYRLTTINGSFWLNLGYISIPKRAKAIPISYLLWDKIPFYLIQEIVWNYGA 122

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM--------------- 180
            +     + F   +E  +W         Y FN D ++  N                    
Sbjct: 123 GVA--AKKFFSPRNEKFLWYVKDEL--NYIFNLDDIRDPNVKYPNQKKNGKIKVNPMGKN 178

Query: 181 -RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
               W IP  +  +   +K+    HP Q P A++ RI+ +S+  GD+ILDPF GSGT+  
Sbjct: 179 PTDVWQIPKVTSGKNRASKE-RTPHPCQYPIAVIDRIIKASSNKGDLILDPFLGSGTTAI 237

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
           VA KL RS IG E+  DY ++A KRI + +     ++   +
Sbjct: 238 VALKLDRSVIGFEINSDYCEMAVKRIKTFKSEKQTDVIQFS 278


>gi|220906264|ref|YP_002481575.1| DNA methylase N-4/N-6 domain-containing protein [Cyanothece sp. PCC
           7425]
 gi|219862875|gb|ACL43214.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7425]
          Length = 323

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 76/284 (26%), Positives = 128/284 (45%), Gaps = 38/284 (13%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
           +    + +   + I  +  + L+ LP +SVDL+F DPPYNL      +R           
Sbjct: 37  DRPVELQDVVQRTIHQDLFTTLDFLPHRSVDLLFIDPPYNLDKTFNTHRFKKK------- 89

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
                   E Y  +  + L    R+LKP  ++++   + +   +  ++++  F I N I 
Sbjct: 90  ------DLETYTDWLASCLNGLERMLKPTASIYICSDWQSSPAVFEVIKH-RFQIRNRIT 142

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ------MRSDW 184
           W +       R   ++NA E + + +    +  YTFN +A+K   + +       M  DW
Sbjct: 143 WEREKGRGASRN--WKNASEDIWFCT---VSDRYTFNVEAVKLKRKVMAPYTVNGMPKDW 197

Query: 185 LIPICSGSE-------------RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
            I                       +      HPTQKPE LL++I+++S+ PGD+I DPF
Sbjct: 198 EITDQGNYRLTYPSNLWTDLTVPFWSMPENTDHPTQKPEKLLAKIILASSNPGDVIFDPF 257

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
            GSGT+   AKKL R + G+EM + Y  +  KR+   +   +I+
Sbjct: 258 LGSGTTSVAAKKLGRQYFGVEMDELYCCLTEKRLKIAEADPSIQ 301


>gi|194439829|ref|ZP_03071894.1| DNA methylase family protein [Escherichia coli 101-1]
 gi|194421219|gb|EDX37241.1| DNA methylase family protein [Escherichia coli 101-1]
          Length = 227

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 102/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I G+ + V+   P  +VD I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFILGDCVRVMATFPDNAVDFILTDPPYLVGFRD---RQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPALPQKPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|10955304|ref|NP_052645.1| putative methylase [Escherichia coli O157:H7 str. Sakai]
 gi|75994520|ref|YP_325634.1| putative methylase [Escherichia coli O157:H7 EDL933]
 gi|149930817|ref|YP_001294717.1| putative methylase [Escherichia coli]
 gi|168752517|ref|ZP_02777539.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4113]
 gi|168757287|ref|ZP_02782294.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4401]
 gi|168765074|ref|ZP_02790081.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4501]
 gi|168769248|ref|ZP_02794255.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4486]
 gi|168776734|ref|ZP_02801741.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4196]
 gi|168783023|ref|ZP_02808030.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4076]
 gi|168789946|ref|ZP_02814953.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC869]
 gi|168802817|ref|ZP_02827824.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC508]
 gi|208811329|ref|ZP_03253089.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4206]
 gi|208817433|ref|ZP_03258462.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4045]
 gi|208823371|ref|ZP_03263688.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4042]
 gi|209395564|ref|YP_002268432.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4115]
 gi|217329930|ref|ZP_03446005.1| DNA methylase family protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|254667492|ref|YP_003082178.1| hypothetical protein ECSP_6044 [Escherichia coli O157:H7 str.
           TW14359]
 gi|261225668|ref|ZP_05939949.1| hypothetical protein EscherichiacoliO157_13847 [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261257877|ref|ZP_05950410.1| hypothetical protein EscherichiacoliO157EcO_18978 [Escherichia coli
           O157:H7 str. FRIK966]
 gi|37695805|gb|AAR00467.1|AF401292_70 w0053 [Escherichia coli]
 gi|3337036|dbj|BAA31795.1| hemagglutinin-associated protein [Escherichia coli O157:H7 str.
           Sakai]
 gi|3822188|gb|AAC70142.1| hypothetical protein [Escherichia coli O157:H7]
 gi|187767953|gb|EDU31797.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4196]
 gi|188013662|gb|EDU51784.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4113]
 gi|188999527|gb|EDU68513.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4076]
 gi|189355640|gb|EDU74059.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4401]
 gi|189361686|gb|EDU80105.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4486]
 gi|189365051|gb|EDU83467.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4501]
 gi|189370557|gb|EDU88973.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC869]
 gi|189375299|gb|EDU93715.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC508]
 gi|208729959|gb|EDZ79176.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4206]
 gi|208730610|gb|EDZ79309.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4045]
 gi|208736966|gb|EDZ84651.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4042]
 gi|209157019|gb|ACI34453.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4115]
 gi|217317161|gb|EEC25594.1| DNA methylase family protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|254595844|gb|ACT75204.1| hypothetical protein ECSP_6044 [Escherichia coli O157:H7 str.
           TW14359]
 gi|320188691|gb|EFW63352.1| Adenine-specific methyltransferase [Escherichia coli O157:H7 str.
           EC1212]
 gi|326337217|gb|EGD61053.1| Adenine-specific methyltransferase [Escherichia coli O157:H7 str.
           1125]
 gi|326347713|gb|EGD71431.1| Adenine-specific methyltransferase [Escherichia coli O157:H7 str.
           1044]
          Length = 227

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 103/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I+G+ + V+  +P   VD I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFIQGDCVRVMATIPGNGVDFILTDPPYLVGFRD---RQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPALPQKPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|291296771|ref|YP_003508169.1| DNA methylase N-4/N-6 domain-containing protein [Meiothermus ruber
           DSM 1279]
 gi|290471730|gb|ADD29149.1| DNA methylase N-4/N-6 domain protein [Meiothermus ruber DSM 1279]
          Length = 313

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 66/269 (24%), Positives = 112/269 (41%), Gaps = 45/269 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I  G+   +L+++P  S+ L+   PPYN+                    ++   + +AY 
Sbjct: 23  IYPGDCTELLKQIPDASISLVITSPPYNIGK-----------------PYESRKALDAYL 65

Query: 83  AFTRAWLLACRRVLKPNGTL-WVIGSYHNIFRI-------GTMLQNLNFWILNDIVWRKS 134
           A+    +    RVLKP G+L W +G+Y +   I         +  NL   + N IVW   
Sbjct: 66  AWQEGVVKESVRVLKPTGSLVWQVGNYVDNGEILPLDMLLFPIFTNLGLKLRNRIVWAFE 125

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS------------ 182
           + +     RRF   +E  +W + + +   YTFN D+++   +    +             
Sbjct: 126 HGL--HAKRRFSGRYEVALWFTKTDE---YTFNLDSVRVPQKYPNKKHFKGPKKGELSGN 180

Query: 183 ---DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
                   +        N   +  HP Q P  L+ R +++ T+  D +LDPF GSGT+  
Sbjct: 181 PLGKNPGDVWVFPNVKANHVEKTGHPAQYPVELVERFVLALTEEDDWVLDPFGGSGTTLI 240

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            A   RR     E+  DY++IA +R+   
Sbjct: 241 AALMHRRRGAMAEIIPDYVEIAQQRLREA 269


>gi|298346628|ref|YP_003719315.1| putative site-specific DNA-methyltransferase [Mobiluncus curtisii
           ATCC 43063]
 gi|298236689|gb|ADI67821.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Mobiluncus curtisii ATCC 43063]
          Length = 291

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 75/281 (26%), Positives = 116/281 (41%), Gaps = 43/281 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYN-----------------------LQLNGQL 57
           + ++ G+++ VLE+LP +S  LI+ DPP+N                       +   GQ 
Sbjct: 12  NLVVAGDNLPVLEQLPDESFQLIYIDPPFNTGKVQSRQSLKTVRSDVPVVGSRVGFQGQT 71

Query: 58  YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
           Y      V A  D      SF  Y  F    L    R+L P GTL++   Y  +     +
Sbjct: 72  YETVRGKVTAYND------SFSDYWGFLEPRLEQAWRLLAPTGTLYLHLDYREVHYAKVL 125

Query: 118 LQNL--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN-------- 167
           L  L      LN+I+W           R++   H+ ++        K Y F+        
Sbjct: 126 LDALFGRDCFLNEIIWAYDYGG--RSKRKWPAKHDNILVYVKDQ--KQYYFDSDSVDREP 181

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
           Y A      +   R      +   +        +  + TQKPE +L RI+ +S++PGD +
Sbjct: 182 YMAPGLVTPEKAARGKLPTDVWWHTIVSPTGKEKTGYATQKPEGILRRIVQASSRPGDWV 241

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           LD F GSGT+GAVA  L R F+ I+   + I+I   R+   
Sbjct: 242 LDFFAGSGTTGAVAGTLERRFVLIDENPEAIEIMRSRLNRA 282


>gi|302595326|ref|YP_003829041.1| putative methylase [Escherichia coli]
 gi|302310062|gb|ADL13935.1| YubD [Escherichia coli]
          Length = 227

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 103/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I+G+ + V+   P  +VD I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFIQGDCVRVMATFPGNAVDFILTDPPYLVGFRD---RQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPALPQKPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|254185002|ref|ZP_04891591.1| DNA modification methylase RsrI [Burkholderia pseudomallei 1655]
 gi|184215594|gb|EDU12575.1| DNA modification methylase RsrI [Burkholderia pseudomallei 1655]
          Length = 282

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 71/262 (27%), Positives = 119/262 (45%), Gaps = 33/262 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++   + +     LP  S+DLI A PPY L  +        S               + +
Sbjct: 30  ELHNRDFLHEAASLPDASIDLIVAGPPYGLGKDYGNDSDKRSG--------------DEH 75

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+TR WL      LK  G+++V  ++     I + L+     ++N+I+W +  P     
Sbjct: 76  LAWTREWLELAVPKLKSTGSMYVFCTWQYAPEIFSFLK-TKLTMVNEIIWDRRVPSMGGT 134

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR---------SDWL------I 186
            RRF + H+ + + +    +KGY F+ D ++   +    +         S WL       
Sbjct: 135 TRRFTSVHDNIGFFA---VSKGYYFDLDPVRIPYDADTKKARSRKLFEGSKWLELGYNPK 191

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            + S S   R       HPTQKP  ++ R++++S  PG  +LDPF GSGT+     + RR
Sbjct: 192 DVWSVSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQRR 251

Query: 247 SFIGIEMKQDYIDIATKRIASV 268
            F+G E+ + Y  IA +R+AS+
Sbjct: 252 GFVGYEINESYCAIARERVASL 273


>gi|324016383|gb|EGB85602.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 117-3]
          Length = 227

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 103/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I+G+ + V+   P  +VD I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFIQGDCVRVMATFPGNAVDFILTDPPYLVGFRD---RQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFVAAWKNAGFSVVGHLVFTKTYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPALPQKPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|315655187|ref|ZP_07908088.1| adenine specific DNA methylase [Mobiluncus curtisii ATCC 51333]
 gi|315490442|gb|EFU80066.1| adenine specific DNA methylase [Mobiluncus curtisii ATCC 51333]
          Length = 291

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 74/281 (26%), Positives = 118/281 (41%), Gaps = 43/281 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYN-----------------------LQLNGQL 57
           + ++ G+++ VLE+LP +S  LI+ DPP+N                       +   GQ 
Sbjct: 12  NLVVAGDNLPVLEQLPDESFQLIYIDPPFNTGKVQSRQSLKTVRTDAPVTGSRVGFQGQT 71

Query: 58  YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
           Y      V A  D      SF  Y  F    L    R+L P GTL++   Y  +     +
Sbjct: 72  YETVRGKVTAYND------SFSDYWGFLEPRLEQVWRLLAPTGTLYLHLDYREVHYAKVL 125

Query: 118 LQNL--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN-------- 167
           L  L      LN+I+W           R++   H+ ++      +   Y F+        
Sbjct: 126 LDALFGRDCFLNEIIWAYDYGG--RSKRKWPAKHDNILVYVKDQE--RYYFDSESVDREP 181

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
           Y A      +   R      +   +        +  + TQKPE +L RI+ +S++PGD +
Sbjct: 182 YMAPGLVTPEKAARGKLPTDVWWHTIVSPTGKEKTGYATQKPEGILRRIVQASSRPGDWV 241

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           LD F GSGT+GAVA  L R F+ I+   + I+I  +R++  
Sbjct: 242 LDFFAGSGTTGAVAGTLERRFVLIDENPEAIEIMRRRLSRA 282


>gi|9507765|ref|NP_061431.1| putative methylase [Plasmid F]
 gi|300824693|ref|ZP_07104799.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 119-7]
 gi|81625266|sp|Q9S4X2|YUBD_ECOLI RecName: Full=Putative methylase yubD
 gi|5702169|gb|AAD47178.1| putative methyltransferase [Escherichia coli]
 gi|8918875|dbj|BAA97922.1| yfeA [Plasmid F]
 gi|300522783|gb|EFK43852.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 119-7]
 gi|324115775|gb|EGC09709.1| DNA methylase [Escherichia coli E1167]
          Length = 227

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 103/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I+G+ + V+   P  +VD I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFIQGDCVRVMATFPGNAVDFILTDPPYLVGFRD---RQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPALPQKPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|149002824|ref|ZP_01827750.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP14-BS69]
 gi|147759118|gb|EDK66112.1| type II DNA modification methyltransferase, putative [Streptococcus
           pneumoniae SP14-BS69]
          Length = 325

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 74/302 (24%), Positives = 132/302 (43%), Gaps = 36/302 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++KG+++ +L+ + + S+DLI+ DPP+  Q   +L    + +     D+W   +S E Y
Sbjct: 2   TVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNIMYS-FEDTW---TSIEDY 57

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPN 139
             F    L  C+RVLK +G+++V         I  +L N+       ++I+W       +
Sbjct: 58  KEFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGADMFQSEIIWNYKRWSNS 117

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ-------------------- 179
            +G    N H+ + + S S   K  T   +     N D                      
Sbjct: 118 KKG--LLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTIYKVDNNG 175

Query: 180 -------MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
                       L  + +             +PTQKP  LL +I+  +T   DI+LDPF 
Sbjct: 176 NYILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDIVLDPFC 235

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV-QPLGNIELTVLTGKRTEPRVAFN 291
           GSGT+   +K L R+++GI++ ++ I+I  +R+ +V +   N+    +   RT+     N
Sbjct: 236 GSGTTLVASKILNRNYMGIDLSEEAINITQQRLENVIKTSSNLLNKGIEAYRTKTEEEEN 295

Query: 292 LL 293
           +L
Sbjct: 296 IL 297


>gi|254421699|ref|ZP_05035417.1| DNA methylase domain protein [Synechococcus sp. PCC 7335]
 gi|196189188|gb|EDX84152.1| DNA methylase domain protein [Synechococcus sp. PCC 7335]
          Length = 330

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 73/283 (25%), Positives = 126/283 (44%), Gaps = 39/283 (13%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
             S+ +  D+ I  +S++ L  +P   VDL+  DPPYN Q +                S 
Sbjct: 42  PQSVADILDRTIHQDSLTALPLMPDSFVDLLIVDPPYNRQKD-------------FNGST 88

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
            K      Y  +  +W+    R+LKP  ++++   + +   I  +    +F + N I W 
Sbjct: 89  FKVMPEADYQIWLASWMSQLPRLLKPTASIYMCCDWQSSNAIYQVFSR-HFQVRNRITWE 147

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA-------LKAANEDVQMRSDWL 185
           +         R ++NA E + + +    +  YTFN +A            ++     DW 
Sbjct: 148 REKGRG--AKRNWKNASEDIWFGT---MSDKYTFNVEAVKLQRRVRAPYRDNAGKPKDWQ 202

Query: 186 IP-------------ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
                              S    +      HPTQKPE L+++++++S+ PG+++ DPF 
Sbjct: 203 ETQQGNFRNTYPSNLWTDISIPFWSMAENTDHPTQKPEKLIAKMVLASSNPGNVVFDPFL 262

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           GSGT+  VAKKL R ++GIE ++ Y   A KR+A  +   +I+
Sbjct: 263 GSGTTSVVAKKLGRHYVGIEQEELYACWAQKRLALAEQDTSIQ 305


>gi|297242706|ref|ZP_06926644.1| DNA methylase N-4/N-6 domain-containing protein [Gardnerella
           vaginalis AMD]
 gi|296888917|gb|EFH27651.1| DNA methylase N-4/N-6 domain-containing protein [Gardnerella
           vaginalis AMD]
          Length = 411

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 97/258 (37%), Gaps = 37/258 (14%)

Query: 20  KDKIIKGNS--ISVLEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K  +I G++  +   + L     V+L+  DPPYN+   G   +  +          DKF 
Sbjct: 167 KHHVICGDATKLETYKTLLENTKVNLVVTDPPYNVNYEGAAGKIKND-----NMENDKFY 221

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
                  F     +   + +  + +++V  +           Q+  F++    +W+   P
Sbjct: 222 ------QFLFNSFVNMEQAMADDASIYVFHADTEGLNFRKAFQDAGFYLSGCCIWK--KP 273

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
                   +Q  HE  ++       K    N+ A +                 +      
Sbjct: 274 SLVLGRSPYQWQHEPCLYGWK----KKGKHNWYAGRKE---------------TSVWEFE 314

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                  HPT KP ALL+  + +S+    ++LDPF GSG++    ++  R    IE+ + 
Sbjct: 315 KSKKNADHPTMKPIALLAYPIKNSSMTNSLVLDPFAGSGSTLIACEQTGRICYAIELDEK 374

Query: 257 YIDIATKRIASVQPLGNI 274
           Y D+  KR   ++ +GN 
Sbjct: 375 YCDVIVKRY--IEQVGND 390


>gi|325564297|gb|ADZ31432.1| M.DraI [Deinococcus radiophilus]
          Length = 328

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 73/276 (26%), Positives = 120/276 (43%), Gaps = 39/276 (14%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           ++KII  +    L+ LP   VDL+  DPPYNL       +   +               E
Sbjct: 40  RNKIINQDLFDCLDNLPDAFVDLMIIDPPYNLDKVYAGKKFSQT-------------DDE 86

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y  +  +WL    R+LKP+ T+++   + +   I ++       I + I W +      
Sbjct: 87  TYKEWVDSWLSRLIRLLKPDATVYICCDWQSSNVIHSVASK-YLKIRSRITWEREKGRG- 144

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALK-------AANEDVQMRSDWLIP----- 187
                ++N  E + + +     K Y F+ +A+K          +      DW        
Sbjct: 145 -SKDNWKNCSEDIWYCTVG---KKYFFDVEAVKLMKRVIAPYRDGDGKPKDWSEKAEGKY 200

Query: 188 --------ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
                       S    +      HPTQKPE L+++++VSS+K GD+I DPF GSGTS  
Sbjct: 201 RLTHPSNLWTDISIPFWSMPENTDHPTQKPEKLIAKLIVSSSKKGDMIFDPFMGSGTSCV 260

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
            AKKL R+++GIE+ ++Y  +A  R+   +    I+
Sbjct: 261 TAKKLGRNYLGIEISEEYCKMAAARLIRAEDDKRIQ 296


>gi|157149426|ref|YP_001451454.1| putative methylase [Escherichia coli E24377A]
 gi|157076593|gb|ABV16305.1| DNA methylase family protein [Escherichia coli E24377A]
          Length = 227

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 102/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I G+ + V+   P  +VD I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFILGDCVRVMATFPDNAVDFILTDPPYLVGFRD---RQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPALPQKPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|332073769|gb|EGI84247.1| DNA methylase family protein [Streptococcus pneumoniae GA41301]
          Length = 325

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 74/302 (24%), Positives = 132/302 (43%), Gaps = 36/302 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++KG+++ +L+ + + S+DLI+ DPP+  Q   +L    + +     D+W   +S E Y
Sbjct: 2   TVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNIMYS-FEDTW---TSIEDY 57

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPN 139
             F    L  C+RVLK +G+++V         I  +L N+       ++I+W       +
Sbjct: 58  KEFLSIRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGADMFQSEIIWNYKRWSNS 117

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ-------------------- 179
            +G    N H+ + + S S   K  T   +     N D                      
Sbjct: 118 KKG--LLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRNGNSKTIYKVDNNG 175

Query: 180 -------MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
                       L  + +             +PTQKP  LL +I+  +T   DI+LDPF 
Sbjct: 176 DYILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDIVLDPFC 235

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV-QPLGNIELTVLTGKRTEPRVAFN 291
           GSGT+   +K L R+++GI++ ++ I+I  +R+ +V +   N+    +   RT+     N
Sbjct: 236 GSGTTLVASKILNRNYMGIDLSEEAINITQQRLENVIKTSSNLLNKGIEAYRTKTEEEEN 295

Query: 292 LL 293
           +L
Sbjct: 296 IL 297


>gi|170731541|ref|YP_001763488.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           cenocepacia MC0-3]
 gi|169814783|gb|ACA89366.1| DNA methylase N-4/N-6 domain protein [Burkholderia cenocepacia
           MC0-3]
          Length = 249

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 62/259 (23%), Positives = 104/259 (40%), Gaps = 32/259 (12%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP--------DHSLVDAVT 69
           +  +++ + +++S++  LP   VDL+F DPPY+        R            +     
Sbjct: 8   DLINRVHQADALSIMRALPDACVDLVFTDPPYSSGGTTSASRSQAPSSKYIGGDVKTVYP 67

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
           +         ++  +   WL    RV +    L     +  +  +   +Q   F      
Sbjct: 68  EFQHDSKDQRSWTFWCMTWLAEAYRVCRNEAHLACFVDWRQLPSLTDAIQAAGFTWRGVA 127

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
           VW K+      R   F    E L+WA+                        R+D  +P  
Sbjct: 128 VWDKTGGRTRPRAGGFAQQSEFLVWATK-------------------GAVRRADVYLPGV 168

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
             SERL +    K H T+KP  L   ++  +  PG ++LDPF GSGT  A AK+   ++I
Sbjct: 169 -FSERLAHP---KRHMTEKPAQLARDVVRLA-PPGGVVLDPFTGSGTFLAAAKEAGLNWI 223

Query: 250 GIEMKQDYIDIATKRIASV 268
           G E++  Y  +AT R+A +
Sbjct: 224 GCELEPSYHQVATARLAEL 242


>gi|46581137|ref|YP_011945.1| adenine specific DNA methyltransferase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46450558|gb|AAS97205.1| adenine specific DNA methyltransferase, putative [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311234813|gb|ADP87667.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio vulgaris RCH1]
          Length = 249

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 63/267 (23%), Positives = 102/267 (38%), Gaps = 40/267 (14%)

Query: 15  SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ------------LNGQLYRPDH 62
           +  E +  +I+G +++VL  LP  +VD +  DPPY+                 Q      
Sbjct: 3   TTDEERVTLIQGEALTVLRTLPTGAVDTVLTDPPYSSGGITMAARQVDPAQKYQQSNTKR 62

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
           +    + D+ D+ S    +  +   WL  C RV K    + V   +  +  +   LQ   
Sbjct: 63  TYPAMLGDNRDQRS----FTLWATLWLSECWRVAKDGARIMVFTDWRQLPAMTDALQAAG 118

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
           +     + W K +  P   G   ++A   +  +   P     T                 
Sbjct: 119 WMWRGVVTWHKPSARP-SLGDFKRDAEYVITGSKGKPTMHTRT----------------- 160

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGSGTSGAVA 241
                   G  R       K H T+KP ALL  +L  +    D ++LDPF GSG++G   
Sbjct: 161 -----CPPGVYRHSVNAARKTHLTEKPVALLEDLLAVTAPGPDALVLDPFAGSGSTGVAC 215

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASV 268
               R F+GIE+  +Y   A+ R+A V
Sbjct: 216 LNTGRRFVGIELSAEYHARASNRLAEV 242


>gi|147679002|ref|YP_001213217.1| DNA modification methylase [Pelotomaculum thermopropionicum SI]
 gi|146275099|dbj|BAF60848.1| DNA modification methylase [Pelotomaculum thermopropionicum SI]
          Length = 318

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 67/309 (21%), Positives = 119/309 (38%), Gaps = 64/309 (20%)

Query: 2   SQKNSLAINENQNSIFEWKDK----IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQL 57
             +    I     S+    DK    II G++++ L++LP ++V      PPY    +  +
Sbjct: 14  ESQKENTIVIGPPSLLSKIDKETSYIITGDALTALKQLPEETVQTCVTSPPYWGLRDYGI 73

Query: 58  YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN------- 110
                + +D              Y           +RVLKP+GT W+             
Sbjct: 74  PDQIGTEMDVC-----------EYLDKLVKVFREVKRVLKPDGTFWLNMGDGYTSGGRTY 122

Query: 111 ----------------------------------IFRIGTMLQNLNFWILNDIVWRKSNP 136
                                              +R+  +LQ   +++  DI+W K N 
Sbjct: 123 RAPDKKTDNDHVVRGLPFRPPTPAGLKPKDLLGLPWRLAFLLQEDGWYLRADIIWFKPNI 182

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +P     R   AHE +   + +     Y ++Y A+       +   +           + 
Sbjct: 183 LPESVKDRPTIAHEYIFLLTKNE---RYYYDYQAILEPAVSGKGYRNKR-----SVWAVN 234

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
            +   + H    P +L+   +++ +KP D++LDPF GSGT+G VA + +R+FIGIE+  +
Sbjct: 235 TEPYPEAHFATFPPSLVLPCILAGSKPDDLVLDPFLGSGTTGLVALQKKRNFIGIELNPE 294

Query: 257 YIDIATKRI 265
           Y  +A KR+
Sbjct: 295 YCALAEKRL 303


>gi|256784498|ref|ZP_05522929.1| DNA methylase [Streptomyces lividans TK24]
 gi|289768383|ref|ZP_06527761.1| DNA methylase [Streptomyces lividans TK24]
 gi|145244335|gb|ABP49146.1| putative DNA methylase [Streptomyces lividans]
 gi|289698582|gb|EFD66011.1| DNA methylase [Streptomyces lividans TK24]
          Length = 248

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 56/263 (21%), Positives = 102/263 (38%), Gaps = 33/263 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ------LNGQLYRPDHSLVDAVTD---SW 72
            + +G++++VL+ LP +SV  +  DPPYN          G+  R  +   ++  D     
Sbjct: 4   TLHRGDALTVLKSLPDESVQAVITDPPYNSGGRTSSDRTGRTARAKYVTSNSAHDLANFP 63

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
            +     +Y ++    L    R    +    V   +         LQ   +     I W 
Sbjct: 64  GENRDQRSYRSWLTELLTEAYRASTEHAVAMVFTDWRQEPTTSDALQMAGWTWSGTIPWI 123

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K +  P   G +  +  E +IW                       +    D  +P   G 
Sbjct: 124 KPSSRPRKGGPKQDS--EFIIWGVK------------------GSLDNTRDLYLP---GH 160

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
                   +++H TQKP  ++ +++      G  +LDPF GSG++G  A +  R F+G+E
Sbjct: 161 YIASQPRKDRVHITQKPVEVMQQLVQ-VCPEGGTVLDPFTGSGSTGVAALREGRRFVGVE 219

Query: 253 MKQDYIDIATKRIASVQPLGNIE 275
           +   Y D+A +R+ +     + E
Sbjct: 220 LSAHYADVAEERLRAELTKEDFE 242


>gi|51893663|ref|YP_076354.1| type II restriction-modification system DNA methylase
           [Symbiobacterium thermophilum IAM 14863]
 gi|51857352|dbj|BAD41510.1| type II restriction-modification system DNA methylase
           [Symbiobacterium thermophilum IAM 14863]
          Length = 304

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 61/266 (22%), Positives = 99/266 (37%), Gaps = 40/266 (15%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           + ++I   ++ + +  +P   VDL+   PPYN+  N   +              D   S 
Sbjct: 45  FANRIYNADARN-MSFIPDGVVDLVVTSPPYNVGKNYATH--------------DDCLSM 89

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVI--GSYHNIF-----RIGTMLQNLNFWILNDIVW 131
           E Y          C RVL P G + +   G     +      I   +  L F +  +I+W
Sbjct: 90  EEYLDLLEQVWRECYRVLAPGGRIAINVAGVDRKPYLPLHAYITLQMIRLGFQMRGEIIW 149

Query: 132 RKSNPMPNFRGRRFQNA---------HETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
            K   +          +         HE ++  S      G+    D           +S
Sbjct: 150 NKGASVGVSTAWGSWCSPSNPTLRDLHEYILVFSKEDWRMGHRGETDLTPEE-FVTYTKS 208

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
            W  P  S          +  HP   P  L SR++   T  GD++LDPF GSGT+   A 
Sbjct: 209 IWEFPTVSAK--------KVGHPAPFPLELPSRLIKLYTYKGDLVLDPFNGSGTTCQAAA 260

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASV 268
            L R +IG+++   Y  +A K + ++
Sbjct: 261 LLGRRWIGVDIDPGYCALAEKNMRTL 286


>gi|207722999|ref|YP_002253422.1| dna-methyltransferase (dna-modification methylase) protein
           [Ralstonia solanacearum MolK2]
 gi|206588188|emb|CAQ18757.1| dna-methyltransferase (dna-modification methylase) protein
           [Ralstonia solanacearum MolK2]
          Length = 272

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 66/250 (26%), Positives = 111/250 (44%), Gaps = 27/250 (10%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I   + I+ + +L   SV+L+ ADPPY L   G+ Y  D   +             EA
Sbjct: 7   DGIFNEDCIAGIGQLADGSVNLVIADPPYGL---GKDYGNDSDKLSG-----------EA 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y A++  W+ A    L  NG++++  ++     +  ML+     ++N+I+W +  P    
Sbjct: 53  YLAWSERWIEAVLPKLARNGSVYLFCTWQYAPELFVMLKR-RLAMINEIIWDRRVPSMGG 111

Query: 141 RGRRFQNAHETLIW------ASPSPKAKGYTFNYDALKAANEDVQMRSDWL------IPI 188
             R+F + H+ + +            A    ++ +  KA +        WL        +
Sbjct: 112 STRKFSSVHDNIGFFAASRDYYFDVDAVRIPYDAETKKARSRKRFEGKKWLEVGYNPKDV 171

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
            S S   R       HPTQKP  L+ R++++S  PG ++LDPF GSGT+     +  R F
Sbjct: 172 WSVSRLHRQDPERAEHPTQKPLELVERMVLASCPPGGLVLDPFLGSGTTAVACARRGRRF 231

Query: 249 IGIEMKQDYI 258
            G E+  +Y 
Sbjct: 232 AGFEINAEYC 241


>gi|207742815|ref|YP_002259207.1| dna-methyltransferase (dna-modification methylase) protein
           [Ralstonia solanacearum IPO1609]
 gi|206594209|emb|CAQ61136.1| dna-methyltransferase (dna-modification methylase) protein
           [Ralstonia solanacearum IPO1609]
          Length = 272

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 66/250 (26%), Positives = 111/250 (44%), Gaps = 27/250 (10%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I   + I+ + +L   SV+L+ ADPPY L   G+ Y  D   +             EA
Sbjct: 7   DGIFNEDCIAGIGQLADGSVNLVIADPPYGL---GKDYGNDSDKLSG-----------EA 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y A++  W+ A    L  NG++++  ++     +  ML+     ++N+I+W +  P    
Sbjct: 53  YLAWSERWIEAVLPKLARNGSVYLFCTWQYAPELFVMLKR-RLAMINEIIWDRRVPSMGG 111

Query: 141 RGRRFQNAHETLIW------ASPSPKAKGYTFNYDALKAANEDVQMRSDWL------IPI 188
             R+F + H+ + +            A    ++ +  KA +        WL        +
Sbjct: 112 STRKFSSVHDNIGFFAASRDYYFDVDAVRIPYDAETKKARSRKRFEGKKWLEVGYNPKDV 171

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
            S S   R       HPTQKP  L+ R++++S  PG ++LDPF GSGT+     +  R F
Sbjct: 172 WSVSRLHRQDPERAEHPTQKPLELVERMVLASCPPGGLVLDPFLGSGTTAVACARRGRRF 231

Query: 249 IGIEMKQDYI 258
            G E+  +Y 
Sbjct: 232 AGFEINAEYC 241


>gi|28493738|ref|NP_787899.1| DNA modification methyltransferase [Tropheryma whipplei str. Twist]
 gi|28572924|ref|NP_789704.1| DNA methylase [Tropheryma whipplei TW08/27]
 gi|28411057|emb|CAD67442.1| putative DNA methylase [Tropheryma whipplei TW08/27]
 gi|28476780|gb|AAO44868.1| DNA modification methyltransferase [Tropheryma whipplei str. Twist]
          Length = 293

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 69/269 (25%), Positives = 116/269 (43%), Gaps = 28/269 (10%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD-------------HSLVDA 67
           + +++GN+I  L KLP  S  LI+ DPP+N                         +    
Sbjct: 14  NLVVQGNNIDFLHKLPDDSFQLIYIDPPFNTGKRQTRQCSKMVRSPYGEQIGFCGNRYKI 73

Query: 68  VTDSWDKFSS-FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFW 124
           +++S  +++  F+ Y  F +  L    R+LKP G  ++   Y  +     +L ++     
Sbjct: 74  LSESRTEYADMFDDYLGFLKPRLHEAWRLLKPEGMFYLHLDYREVHYAKILLDSIFGRDS 133

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN--------YDALKAANE 176
            +N+I+W           RR+   H+ ++  +  P  + Y F+        Y A      
Sbjct: 134 FINEIIWAYDYGAKT--KRRWPAKHDNILVYAKDP--RKYLFDSENVDREPYMAPGLVTP 189

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
           D   R      +   +        +  +PTQKPE +L RI+ +S++P D +LD F GSGT
Sbjct: 190 DKAKRGKLPTDVWWHTIVSPTGKEKTGYPTQKPEGVLRRIIQASSRPNDWVLDFFAGSGT 249

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           +G VA KL R F+ I+     + I   RI
Sbjct: 250 TGIVAGKLGRKFVLIDNSPQAVKIMKLRI 278


>gi|210135511|ref|YP_002301950.1| hypothetical protein HPP12_1318 [Helicobacter pylori P12]
 gi|210133479|gb|ACJ08470.1| hypothetical protein HPP12_1318 [Helicobacter pylori P12]
          Length = 159

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 81/152 (53%), Positives = 103/152 (67%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E  + II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +    V D WDKF
Sbjct: 4   LKENLNTIIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            SFE YD F   WL  C+R+LK NG++ VIGS+ NIFRIG  LQNL FWILNDI+W KSN
Sbjct: 64  GSFEEYDTFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
           P+PNF G+R  NAHETLIW +   K K   ++
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKKIKEKINGYH 155


>gi|191166264|ref|ZP_03028097.1| DNA methylase family protein [Escherichia coli B7A]
 gi|190903691|gb|EDV63407.1| DNA methylase family protein [Escherichia coli B7A]
          Length = 227

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 104/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RSGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPALPQKPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|193216190|ref|YP_001997389.1| putative methyltransferase [Chloroherpeton thalassium ATCC 35110]
 gi|193089667|gb|ACF14942.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Chloroherpeton thalassium ATCC 35110]
          Length = 292

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 128/294 (43%), Gaps = 39/294 (13%)

Query: 7   LAINENQNSIFEWKDKIIKGNSISVL-EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV 65
           +A  EN+N +      I  G++I +L  ++  +S+DL+F DPPYN+              
Sbjct: 1   MAKFENKNHV------IYHGDAIDILQREIADESIDLVFVDPPYNIGKK----------- 43

Query: 66  DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
              +D  DK+ S   Y  +   W+  C R+LKP GTL+++     +      +++    +
Sbjct: 44  --FSDFHDKWPSDTDYAEWAYRWIDECIRILKPTGTLYLMSGTQAMPYFDLYVRD-KLTV 100

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD------ALKAANEDVQ 179
           L  +VW   +       + F + +E ++       AK Y FN D         A  + + 
Sbjct: 101 LGRLVWAYDSSGVQ-AKKYFGSMYEPILHCVKD--AKAYCFNADDILVEAKTGAKRKLID 157

Query: 180 MRSDWLIPI---------CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
            R +   P                    D  + HP+QKP  LL RI+ +S+  GDI+LDP
Sbjct: 158 YRGEVPKPYNTQKVPGNVWEFPRVRYRMDEYEDHPSQKPMVLLERIVRASSNAGDIVLDP 217

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
           F G+ T+ AVAK   R  + IE ++ Y+ I  +RI  +      +L  +     
Sbjct: 218 FAGTFTAAAVAKAFGRKSVSIESQEKYLKIGLRRILDMTEYQGEKLDAVKKNTK 271


>gi|156743626|ref|YP_001433755.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156234954|gb|ABU59737.1| DNA methylase N-4/N-6 domain protein [Roseiflexus castenholzii DSM
           13941]
          Length = 332

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 134/314 (42%), Gaps = 46/314 (14%)

Query: 1   MSQKNSLAINENQNSIFEWKD--KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
           +   N   I+ N  ++F      +I  G++I+ L  L  +SVD+IFADPPYN++      
Sbjct: 34  IFDINESQIDSNTPTLFYSHPHGEIWIGDTIAWLRSLETESVDMIFADPPYNIRKA---- 89

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
                        WD F S E Y  ++  W+    RVLKP+GTL+ I  +  I     + 
Sbjct: 90  ------------EWDTFESQEEYVEWSLLWIREAARVLKPDGTLY-ICGFSEIIADLKLP 136

Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK-----------AKGYTFN 167
            +  F     ++W   N      G  +  +HE+++    S                +T  
Sbjct: 137 ASRFFKGCRWLIWHYKNKAN--LGSDWGRSHESILHFRKSKNFTFNIDDVRIPYGNHTLK 194

Query: 168 YDALKAANEDVQMRSDW-----LIPICSGSER---------LRNKDGEKLHPTQKPEALL 213
           Y     A      + +        P   G++                +  HPTQKPE LL
Sbjct: 195 YPEHPQAETSQYGKGNGRKNSIWQPHPRGAKPRDVIEIPTTCNGMHEKTPHPTQKPEELL 254

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
            +++++S+  GD+I+DPF GSGT+  VA++LRR++ G ++  +Y     +RI  V+    
Sbjct: 255 RKLVLASSNVGDLIVDPFLGSGTTAVVAEQLRRNWKGCDISLEYCRWTVRRIELVEDWPI 314

Query: 274 IELTVLTGKRTEPR 287
            +      +  E R
Sbjct: 315 EKWIQYDFENAERR 328


>gi|126464051|ref|YP_001045164.1| DNA methylase N-4/N-6 domain-containing protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126105862|gb|ABN78392.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sphaeroides ATCC
           17029]
          Length = 253

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 73/263 (27%), Positives = 111/263 (42%), Gaps = 44/263 (16%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            I+ G+ ++ +  LP  SVD +  DPPY     GQ   P                    +
Sbjct: 6   TILPGDCLASMRTLPDCSVDAVVTDPPY-----GQTSLP--------------------W 40

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   W+    R+LKP G++WV G+           +   + +  DIVW K N    F 
Sbjct: 41  DRFVYGWMPEIARILKPTGSVWVFGTLRMF--TQHWREFDGWTLAQDIVWEKHNGSS-FH 97

Query: 142 GRRFQNAHETLIWASPSPKAKGY-----TFNYDALKAANEDVQMRSDWLIPICSGSE--- 193
             RF+  HE          A  Y     T +  A  A  +   +    +      SE   
Sbjct: 98  ADRFRRVHEQAAHFYRGDWASVYKGKVVTMDATAKTARRKTRPVHMGQIERGSYVSEDGG 157

Query: 194 --------RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
                     R++ G  +HPTQKP A++  +++++  PG ++LDPF GSGT+G VA +L 
Sbjct: 158 PRLMRSVIYARSEHGHAVHPTQKPAAIIEPLILNACPPGGVVLDPFAGSGTTGGVAARLG 217

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  I  E   DY+    +RI+ +
Sbjct: 218 RRAILCEGNPDYLSAMERRISGI 240


>gi|193070202|ref|ZP_03051147.1| DNA methylase family protein [Escherichia coli E110019]
 gi|192956521|gb|EDV86979.1| DNA methylase family protein [Escherichia coli E110019]
          Length = 227

 Score =  165 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 103/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I G+ + V+   P+ +VD I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFILGDCVRVMATFPSNAVDFILTDPPYLVGFRD---RSGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPALPQKPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|116687306|ref|YP_840552.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           cenocepacia HI2424]
 gi|116653021|gb|ABK13659.1| DNA methylase N-4/N-6 domain protein [Burkholderia cenocepacia
           HI2424]
          Length = 327

 Score =  165 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 90/243 (37%), Gaps = 41/243 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+ +  + KL  +SVD I  DPPY +       R   S+ + V   W          
Sbjct: 114 LYNGDCLVAMPKLAPESVDCIVTDPPYLVNFRD---RSGRSIANDVNGDW---------- 160

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
                      RVLK +        ++ +       +   F +    V+ KS        
Sbjct: 161 --LAPAFAEMFRVLKRDAVCISFYGWNKVDLFFDAWKAAGFRVAGHFVFTKSYASKAGLV 218

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +     HE+    +    A       D +                            G +
Sbjct: 219 KY---QHESAYLLAKGRPAAPAAPIADVMPFPY-----------------------SGNR 252

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPT+KP A L  ++ + T+PGD++LDPF GSG++   A++L R +IGIE+   Y   A 
Sbjct: 253 HHPTEKPVAALRTLISAFTQPGDVVLDPFAGSGSTCVAARELGRRYIGIELDATYFAAAK 312

Query: 263 KRI 265
            R+
Sbjct: 313 ARL 315


>gi|224418258|ref|ZP_03656264.1| cytosine specific DNA methyltransferase (DDEM) [Helicobacter
           canadensis MIT 98-5491]
 gi|253827583|ref|ZP_04870468.1| putative methylase [Helicobacter canadensis MIT 98-5491]
 gi|313141791|ref|ZP_07803984.1| cytosine-specific DNA methyltransferase [Helicobacter canadensis
           MIT 98-5491]
 gi|253510989|gb|EES89648.1| putative methylase [Helicobacter canadensis MIT 98-5491]
 gi|313130822|gb|EFR48439.1| cytosine-specific DNA methyltransferase [Helicobacter canadensis
           MIT 98-5491]
          Length = 589

 Score =  165 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 76/264 (28%), Positives = 127/264 (48%), Gaps = 26/264 (9%)

Query: 7   LAINENQNSIFEWKDKIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSL 64
             IN++Q++   +   I   +S S++E    +   V+ I  DPPYN+  +      + + 
Sbjct: 347 NQINQDQHTGKNF--TIYNSDSYSMIETFIKQGLKVNHIITDPPYNISQDNNFSTMNSAK 404

Query: 65  VDAVT-DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
              +    WDK      +D F   W+ +  ++L  NG+  +  SY  +  I   L+N + 
Sbjct: 405 RQGIDFGEWDK-----KFDLF--NWIKSYSKILDINGSFIIFCSYRFVSHICDTLENSDC 457

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
            + + ++W+KSNPMP    RR+    E  +WA        + FN       N    +R+ 
Sbjct: 458 VVKDILIWQKSNPMPRNISRRYVQDMEFAVWAVKKGA--KWVFN-----KPNNKKYLRAM 510

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           +  P+  G ER         HPTQK   ++  I+   T   D++LDPF GSG++G  A  
Sbjct: 511 YTAPVVRGFERTE-------HPTQKSLKVMQEIIQIHTNKDDLVLDPFMGSGSTGVAAIC 563

Query: 244 LRRSFIGIEMKQDYIDIATKRIAS 267
             R+F+GIE+ + Y +IA KR++S
Sbjct: 564 NGRNFLGIELSKKYYNIALKRLSS 587


>gi|330822157|ref|YP_004350985.1| DNA methylase N-4/N-6 domain protein [Burkholderia gladioli BSR3]
 gi|327374309|gb|AEA65662.1| DNA methylase N-4/N-6 domain protein [Burkholderia gladioli BSR3]
          Length = 218

 Score =  165 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 58/245 (23%), Positives = 99/245 (40%), Gaps = 41/245 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+ +  L +L  +SVD +  DPPY +    +  R                 + ++ D
Sbjct: 4   LYNGDCLVALPQLARESVDCVITDPPYLVNFRDRSGRS---------------IANDSND 48

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            +     +   RVLK +        ++ + R     ++  F +   IV+ K+        
Sbjct: 49  EWLDPAFIEIYRVLKRDTVCVSFYGWNKVDRFFHAWKSAGFRVCGHIVFTKTYASKAGLV 108

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +     HE+    +    A                         PI  G  +     G K
Sbjct: 109 KY---QHESAYVLAKGRPAAP---------------------ENPI--GDVQRFEYSGNK 142

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPT+KP + L  ++ S +KPGD ILDPF GSG++   A++L R +IGIE+ + Y   A 
Sbjct: 143 HHPTEKPVSALRTLISSFSKPGDTILDPFAGSGSTCVAARELGRRYIGIELDETYFAAAK 202

Query: 263 KRIAS 267
            R+++
Sbjct: 203 TRLSA 207


>gi|284924688|emb|CBG27883.1| DNA methylase [Escherichia coli]
 gi|323158252|gb|EFZ44338.1| DNA methylase family protein [Escherichia coli E128010]
          Length = 227

 Score =  165 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 102/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I G+ + V+   P  +VD I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFILGDCVRVMATFPGNAVDFILTDPPYLVGFRD---RSGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPALPQKPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|60115640|ref|YP_209431.1| putative methylase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|45758198|gb|AAS76410.1| putative site-specific DNA methyl transferase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
          Length = 227

 Score =  165 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 106/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R  +  +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P  +G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPALPQKPLPDVQGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|221369876|ref|YP_002520972.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sphaeroides
           KD131]
 gi|221162928|gb|ACM03899.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sphaeroides
           KD131]
          Length = 253

 Score =  165 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 73/263 (27%), Positives = 110/263 (41%), Gaps = 44/263 (16%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            I+ G+ ++ +  LP  SVD +  DPPY     GQ   P                    +
Sbjct: 6   TILPGDCLASMRTLPNCSVDAVVTDPPY-----GQTSLP--------------------W 40

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F   W+    R+LKP G++WV G+           +   + +  DIVW K N    F 
Sbjct: 41  DRFVYGWMAEIGRILKPTGSVWVFGTLRTF--TQHWREFDGWTLAQDIVWEKHNGSS-FH 97

Query: 142 GRRFQNAHETLIWASPSPKAKGY-----TFNYDALKAANEDVQMRSDWLIPICSGSE--- 193
             RF+  HE          A  Y     T +  A     +   +   W+      SE   
Sbjct: 98  ADRFRRVHEQAAHFYRGDWASVYKGKVVTMDATAKSVRRKTPPVHMGWIDHGSYVSEDGG 157

Query: 194 --------RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
                     R++ G   HPTQKP A++  +++++  PG ++LDPF GSGT+G VA +L 
Sbjct: 158 PRLMRSVIYSRSEHGRAQHPTQKPAAIIEPLILNACPPGGVVLDPFAGSGTTGGVAARLG 217

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  I  E   DY+ +  +RI  +
Sbjct: 218 RKAILCEGNTDYLSVMERRIGGI 240


>gi|238023453|ref|YP_002907686.1| DNA methylase N-4/N-6 domain protein [Burkholderia glumae BGR1]
 gi|237880506|gb|ACR32835.1| DNA methylase N-4/N-6 domain protein [Burkholderia glumae BGR1]
          Length = 217

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 98/248 (39%), Gaps = 41/248 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           + +G+ +  L +L  +SVD +  DPPY +       R   S+ + VTD W          
Sbjct: 4   LFRGDCLVALPQLARESVDCVITDPPYLVNFRD---RSGRSIANDVTDEW---------- 50

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
                      RVLK +        ++ + R     +   F +   +++ K+    +   
Sbjct: 51  --LDPAFAEIYRVLKRDTVCVSFYGWNKVDRFFQAWKRAGFRVCGHLIFTKTYGSKSGMV 108

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +    A   L    P   A                  +      P            G +
Sbjct: 109 KYQHEAAYVLGKGRPEAPANP----------------IADVQPFPYT----------GNR 142

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPT+KP A L  ++ + TKPGD +LDPF GSG++   A++L R +IGIE+ + Y   A 
Sbjct: 143 HHPTEKPVAALRTLIAAFTKPGDTVLDPFAGSGSTCVAARELGRRYIGIELDETYFAAAK 202

Query: 263 KRIASVQP 270
            R+++  P
Sbjct: 203 ARLSAPLP 210


>gi|300703719|ref|YP_003745321.1| site-specific DNA-methyltransferase (adenine-specific) [Ralstonia
           solanacearum CFBP2957]
 gi|299071382|emb|CBJ42701.1| Site-specific DNA-methyltransferase (adenine-specific) [Ralstonia
           solanacearum CFBP2957]
          Length = 272

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 66/250 (26%), Positives = 111/250 (44%), Gaps = 27/250 (10%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I   + I+ + +L   SV+L+ ADPPY L   G+ Y  D   +             EA
Sbjct: 7   DGIFNEDCIAGIGQLADGSVNLVIADPPYGL---GKDYGNDSDKLSG-----------EA 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y A++  W+ A    L  NG++++  ++     +  ML+     ++N+I+W +  P    
Sbjct: 53  YLAWSERWIEAVLPKLARNGSVYLFCTWQYAPELFVMLKR-RLAMINEIIWDRRVPSMGG 111

Query: 141 RGRRFQNAHETLIW------ASPSPKAKGYTFNYDALKAANEDVQMRSDWL------IPI 188
             R+F + H+ + +            A    ++ +  KA +        WL        +
Sbjct: 112 STRKFSSVHDNIGFFAASRDYYFDVDAVRIPYDAETKKARSRKRFEGKKWLEVGYNPKDV 171

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
            S S   R       HPTQKP  L+ R++++S  PG ++LDPF GSGT+     +  R F
Sbjct: 172 WSVSRLHRQDPERAEHPTQKPLELVERMVLASCPPGGLVLDPFLGSGTTAVACARRGRRF 231

Query: 249 IGIEMKQDYI 258
            G E+  +Y 
Sbjct: 232 AGFEINAEYC 241


>gi|294789831|ref|ZP_06755059.1| DNA (cytosine-5-)-methyltransferase [Simonsiella muelleri ATCC
           29453]
 gi|294482213|gb|EFG29912.1| DNA (cytosine-5-)-methyltransferase [Simonsiella muelleri ATCC
           29453]
          Length = 224

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 101/246 (41%), Gaps = 34/246 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+I G+ + +L+K+P  SVD +  DPPY + +     +               FS     
Sbjct: 5   KLIHGDCLDLLKKIPDGSVDCVITDPPYYVGMTHNAQKA-------------VFSDLMML 51

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F        +RV+K  G ++V   +  +  +  +   +     N +VW K     +  
Sbjct: 52  KPFFTQLFNELKRVVKKGGFIYVFTDWRTLPFLQPIFDEI-LGAKNLLVWDKIVGRVSPY 110

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            R     HE +++A+                +  +             SG+    +   +
Sbjct: 111 YRY---QHEFILFATNG-------------TSERKIYASSIIKEKSFSSGA----HSTNK 150

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+HPTQKP  L  R++   T  GD++LD F GSG  G    +L R FIG E+ ++Y + A
Sbjct: 151 KIHPTQKPVELFQRLITDGTDCGDVVLDCFMGSGACGVACVRLEREFIGFEINEEYFNGA 210

Query: 262 TKRIAS 267
            K I S
Sbjct: 211 KKAINS 216


>gi|291541442|emb|CBL14552.1| DNA modification methylase [Ruminococcus bromii L2-63]
 gi|291557341|emb|CBL34458.1| DNA modification methylase [Eubacterium siraeum V10Sc8a]
 gi|295092168|emb|CBK78275.1| DNA modification methylase [Clostridium cf. saccharolyticum K10]
          Length = 318

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 72/324 (22%), Positives = 118/324 (36%), Gaps = 91/324 (28%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            DKI  G+S+ VL+ LP  +VD     PPY      + Y  D  +         + ++ E
Sbjct: 5   MDKIYCGDSLQVLQTLPENAVDCCVTSPPY---YALRDYGADGQI--------GREATPE 53

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI---------------------------- 111
            Y +   A     +RVL P GT W+  +                                
Sbjct: 54  EYVSRITAVFHEVKRVLTPEGTCWLNIADTYCGTGSKADHQDPKYPKGRNGQQVAFNHRA 113

Query: 112 ------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
                       + +   L+   +++ + I+W K+NPMP     R    +E +   +   
Sbjct: 114 PGCKPKDLIGIPWLVALALRGDGWYLRSSIIWHKTNPMPESTRDRPTRCYEYVFLLTK-- 171

Query: 160 KAKGYTFNYDA-----------------------------------LKAANEDVQMRSDW 184
            +K Y +++ A                                   +    E      + 
Sbjct: 172 -SKKYYYDWQAVAEPIAPTTAGRLKSGVSKGNKYNVTVPGQNQPQKINRPREKGAYADEL 230

Query: 185 LIPICS--GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           + P+ S     ++ N      H    P  L    +++    G I+LDPFFGSGT+G VAK
Sbjct: 231 ISPVRSRRNVWQINNVGYHGGHFAAFPPKLAETCILAGCPIGGIVLDPFFGSGTTGMVAK 290

Query: 243 KLRRSFIGIEMKQDYIDIATKRIA 266
           +L R +IGIE+  DY ++A +RI 
Sbjct: 291 RLNRRYIGIELNPDYCELAKQRIG 314


>gi|291285942|ref|YP_003502759.1| hypothetical protein G2583_pO550159 [Escherichia coli O55:H7 str.
           CB9615]
 gi|290765815|gb|ADD59775.1| hypothetical protein G2583_pO550159 [Escherichia coli O55:H7 str.
           CB9615]
          Length = 227

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 103/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I+G+ + V+   P  +VD I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFIQGDCVRVMATFPGNAVDFILTDPPYLVGFRD---RQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDTLMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPALPQKPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|188574255|ref|YP_001919391.1| DNA methylase [Escherichia coli 53638]
 gi|188501430|gb|ACD54564.1| DNA methylase [Escherichia coli 53638]
          Length = 227

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 104/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPALPQKPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|218962098|ref|YP_001741873.1| BstYI methyltransferase [Candidatus Cloacamonas acidaminovorans]
 gi|167730755|emb|CAO81667.1| BstYI methyltransferase [Candidatus Cloacamonas acidaminovorans]
          Length = 310

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 57/269 (21%), Positives = 109/269 (40%), Gaps = 45/269 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           + +G+ + +L+ +P  ++ L+   PPYN+                    ++K    + Y 
Sbjct: 16  LFQGDCLELLDSIPDAAIQLVVTSPPYNIGKK-----------------YEKRQPLDEYI 58

Query: 83  AFTRAWLLACRRVLKPNGTL-WVIGSYHNIFRIGTM-------LQNLNFWILNDIVWRKS 134
            + +  +  C RVLK +G++ W +G+Y     I  +              + N I+W   
Sbjct: 59  DWQKKVITECCRVLKKSGSICWQVGNYIENGEIIPLDILLYPVFAESGLKLRNRIIWHFG 118

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS------------ 182
           + +     +RF   +E ++W +    +  Y FN D ++   +    +             
Sbjct: 119 HGL--HSSKRFSGRYEVILWFTK---SDEYIFNLDPVRIPQKYPNKKYFKGDKKGELSCN 173

Query: 183 ---DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
                   + +      N   + +HP Q P  L+ R+++S T   D  LDPF G+GT+  
Sbjct: 174 PLGKNPSDVWNIPNVKANHIEKTIHPAQFPVELVERLILSMTNENDWTLDPFMGTGTTQI 233

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            +    R   G E+  +Y +IA +RI S 
Sbjct: 234 ASLIHNRKSCGAELLDEYYEIALQRINSA 262


>gi|46579511|ref|YP_010319.1| adenine specific DNA methyltransferase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46448926|gb|AAS95578.1| adenine specific DNA methyltransferase, putative [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311233325|gb|ADP86179.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio vulgaris RCH1]
          Length = 247

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 60/265 (22%), Positives = 102/265 (38%), Gaps = 40/265 (15%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ------------LNGQLYRPDHSL 64
            + +  +++G S+++L  LP   VD +  DPPY+                 Q      + 
Sbjct: 6   DDERLTLLQGESLAILRTLPDGFVDTVLTDPPYSSGGVTMAARQADPAQKYQQSNTKRTY 65

Query: 65  VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
              + D+ D+ S    +  +   WL  C RV K    + V   +  +  +   LQ   + 
Sbjct: 66  PAMLGDNRDQRS----FTLWATLWLSECWRVAKDGARIMVFTDWRQLPSMTDALQAAGWM 121

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
               + W K +  P   G   ++A   +  +   P                         
Sbjct: 122 WRGVVTWHKPSARP-SLGDFKRDAEYVITGSKGKPIMHSRK------------------- 161

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
                 G          K+H T+KP ALL  +L   T PG ++LDPF GSG++G      
Sbjct: 162 ---CPPGVYSHSVNTARKIHLTEKPVALLENLL-DITAPGGLVLDPFAGSGSTGVACLNT 217

Query: 245 RRSFIGIEMKQDYIDIATKRIASVQ 269
            R ++GIE+ ++Y   A +R+A+ Q
Sbjct: 218 GRRYLGIELSKEYHQRACERLAAHQ 242


>gi|9507473|ref|NP_052480.1| putative methylase [Plasmid ColIb-P9]
 gi|32470188|ref|NP_863412.1| putative methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|194447065|ref|YP_002039086.1| putative methylase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194447177|ref|YP_002043881.1| DNA methylase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|4512470|dbj|BAA75119.1| ycdB [Plasmid ColIb-P9]
 gi|20521556|dbj|BAB91620.1| putative mrthylase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|194358509|gb|ACF56953.1| DNA methylase family protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194405481|gb|ACF65702.1| DNA methylase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|321271602|gb|ADW79690.1| putative DNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Kentucky]
          Length = 227

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 103/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P   +D I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNGIDFILTDPPYLVGFRD---RQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ +                             
Sbjct: 108 VGYRHECAYVLAKGRPALPQKPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|330822254|ref|YP_004362475.1| DNA methylase N-4/N-6 domain protein [Burkholderia gladioli BSR3]
 gi|327374091|gb|AEA65445.1| DNA methylase N-4/N-6 domain protein [Burkholderia gladioli BSR3]
          Length = 218

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 98/244 (40%), Gaps = 41/244 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+ +  L +L  +SVD +  DPPY +    +  R                 + ++ D
Sbjct: 4   LYNGDCLVALPQLARESVDCVITDPPYLVNFRDRSGRS---------------IANDSND 48

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            +     +   RVLK +        ++ + R     ++  F +   IV+ K+        
Sbjct: 49  EWLDPAFVEIYRVLKRDTVCVSFYGWNKVDRFFHAWKSAGFRVCGHIVFTKTYASKAGLV 108

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +     HE+    +    A                         PI  G  +     G K
Sbjct: 109 KY---QHESAYVLAKGRPAAP---------------------ENPI--GDVQRFEYSGNK 142

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPT+KP + L  ++ S +KPGD ILDPF GSG++   A++L R +IGIE+ + Y   A 
Sbjct: 143 HHPTEKPVSALRTLISSFSKPGDTILDPFAGSGSTCVAARELGRRYIGIELDETYFAAAK 202

Query: 263 KRIA 266
            R++
Sbjct: 203 TRLS 206


>gi|71276169|ref|ZP_00652449.1| DNA methylase N-4/N-6 [Xylella fastidiosa Dixon]
 gi|71163087|gb|EAO12809.1| DNA methylase N-4/N-6 [Xylella fastidiosa Dixon]
          Length = 243

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 64/252 (25%), Positives = 105/252 (41%), Gaps = 30/252 (11%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDAVT-----DSWDKF 75
            +G+++ +L  + + SVD +  DPPY    ++++ +        +++ T     D    F
Sbjct: 12  HEGDALRLLCDIDSASVDAVITDPPYCSGAMRMSDRFKPTKRKYINSTTKHIAPDFDCDF 71

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
                + A++  WL  CRRV +P G L V   +  +  +   +Q+   W    IV     
Sbjct: 72  RDHRGFLAWSSQWLSECRRVTRPGGVLLVFTDWRMLPTLTDAVQSAG-WAWQGIVVWDKT 130

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P    +  RF++  E ++WAS          N  A                    G    
Sbjct: 131 PACRPQLGRFRSQAEFIVWASCGLM------NPKAHPV--------------TPVGVFAT 170

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                EK H   KP AL+  ++     P   +LDPF GSGT+G  A +    FIG+E+  
Sbjct: 171 GTAPREKRHQVGKPLALMEHLVKI-VPPTSTVLDPFAGSGTTGVAALRAGHQFIGMEISP 229

Query: 256 DYIDIATKRIAS 267
            Y D+A +R+A 
Sbjct: 230 WYCDVAKQRLAD 241


>gi|332347857|gb|AEE60098.1| putative DNA methylase [Escherichia coli UMNK88]
          Length = 227

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 62/254 (24%), Positives = 103/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I+GN + V+   P  +VD I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFIQGNCVRVMATFPGNAVDFILTDPPYLVGFRD---RQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPALPQKPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|296160132|ref|ZP_06842951.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. Ch1-1]
 gi|295889606|gb|EFG69405.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. Ch1-1]
          Length = 249

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 72/267 (26%), Positives = 108/267 (40%), Gaps = 42/267 (15%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
             W D+   G+   +++ +PA   D    DPPY           D SL+      WD+  
Sbjct: 1   MTWLDQCHFGDCRELMKAMPAAIADACITDPPYG----------DTSLI------WDRR- 43

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
                      W+    RVLKP  ++WV GS   +  +   +    F    +IVWRK N 
Sbjct: 44  --------CAGWIDQVSRVLKPASSIWVFGSMRFVATLFAEMDAAGFRYGQEIVWRKQNG 95

Query: 137 MPNFRGRRFQNAHETLIWASPSPK-----AKGYTFNYDALKAANEDVQMRS--------- 182
              F   RF+  HE  I            A  Y+ +  A     +     +         
Sbjct: 96  TG-FHNDRFRRVHEFAIQFYRGAWEDVFKAPQYSNDATARTVRRKTRPTHTGNIEAGHYV 154

Query: 183 --DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
             D    +      + N+ G  LHPTQKP A+++ ++  S  PG ++LDPF GSG++G  
Sbjct: 155 SEDGGPRLVQSVIEVPNEHGRALHPTQKPLAIIAPLIAYSVPPGGVVLDPFLGSGSTGIA 214

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIAS 267
           AK+L R FIG E     + +   R+  
Sbjct: 215 AKQLGRHFIGCEDDPASMAMQADRLRQ 241


>gi|229175133|ref|ZP_04302649.1| DNA methylase N-4/N-6 domain protein [Bacillus cereus MM3]
 gi|228608269|gb|EEK65575.1| DNA methylase N-4/N-6 domain protein [Bacillus cereus MM3]
          Length = 607

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 81/409 (19%), Positives = 152/409 (37%), Gaps = 82/409 (20%)

Query: 18  EWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQ--LNGQLYRPDHSLVDAVTDSW 72
           +W +KI  G+++ V+  L  +    V L++ DPP++ +     Q+     ++ +      
Sbjct: 52  DWINKIFWGDNLQVMSHLLKEYRGKVKLVYIDPPFDSKAFYKKQIKVKGKNINNDYNSFE 111

Query: 73  DKFSS----FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
           +K  S     + +  F    L+  R +L  +G++++   Y  + +I  ++  +       
Sbjct: 112 EKQYSDMWVNDEFLQFLYERLILIRELLSDDGSIYLHCDYRKVHQIRCIMDEVFGEDNFL 171

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD----- 183
                S    +     ++ +H  +++            +   L+  +E    +       
Sbjct: 172 NSIVWSFSTRSSIKTSWKRSHHDILFYKKGKNPVYNWDDEMVLEPLSESTIKKYKHEDEI 231

Query: 184 ------------------------WLIPICSGSERLRNKDGEKL---------------- 203
                                   W         R   ++G+                  
Sbjct: 232 GKYRLNGRFIKDSPIKGAKDVDPKWEKTNPELVVRDYLREGKVASDYFFIDIENQSASTR 291

Query: 204 --HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             +PTQKPE LL +++ +S+KPGDI++D F GSGT+ AVA K  R FIG ++    I   
Sbjct: 292 TDYPTQKPEELLYKLISASSKPGDIVMDCFMGSGTTLAVAMKTGRKFIGADINLGSIQTT 351

Query: 262 TKRIASVQ-------PLGNIELTVLTGKR----------TEPRVAFNLLVERGLIQPGQI 304
           TKR+  V+        +  IE  + TG              P  A  LL+E   IQP   
Sbjct: 352 TKRLLKVRNEINSNNNIFEIESELFTGIEVYNVNNYDIFRNPVEAKELLIEALEIQP--- 408

Query: 305 LTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFE 353
                GN       DG ++   ++  I+R+  K   ++     ++   E
Sbjct: 409 ---LDGNNVFDGEKDGYMV---KILPINRIATKADLNDIIANLDYKTLE 451


>gi|315655141|ref|ZP_07908043.1| DNA methylase N-4/N-6 domain protein [Mobiluncus curtisii ATCC
           51333]
 gi|315490622|gb|EFU80245.1| DNA methylase N-4/N-6 domain protein [Mobiluncus curtisii ATCC
           51333]
          Length = 432

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 63/272 (23%), Positives = 120/272 (44%), Gaps = 34/272 (12%)

Query: 21  DKIIKGNSISVLE-KLP--AKSVDLIFADPPYNLQLNG-----QLYRPDHSLVDAVTDSW 72
           ++I  G ++ V+   LP    SVD I+ DPP+N   +        +R        V    
Sbjct: 48  NRIYVGENLQVMSGLLPQYEGSVDCIYIDPPFNSGADYVQRIRTHHRGGSKRTITVKQYG 107

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIV 130
           D++ + + Y       L   RR + P GT+++   +H+   +  ++  +     ++N+IV
Sbjct: 108 DRWHTAD-YLQNLYERLTLLRRFMAPTGTIFLHCDWHSSAALRLVMDEVFGGNNLINEIV 166

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE-------------- 176
           W  ++       R F + H+T+++ +     + Y F+ DA++ A                
Sbjct: 167 WAYASGGG--SRRAFGHKHDTILFYARD--RRRYYFDPDAVRVAYNAAISPKRRKLFNPQ 222

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
            +     W IP         + D    +PTQKP  ++ R + ++  PG +++D F GSG+
Sbjct: 223 GMVAPDVWQIPRPPN-----HSDTWVGYPTQKPLEVMQRAIDAACPPGGLVMDCFAGSGS 277

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +   A +L R F+GIE     + +A +R+   
Sbjct: 278 TLVAAAQLGRRFLGIERNSLGVHLARRRLVQA 309


>gi|58865222|emb|CAA65779.2| site-specific DNA-methyltransferase [Geobacillus
           stearothermophilus]
          Length = 226

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 105/236 (44%), Gaps = 25/236 (10%)

Query: 37  AKSVDLIFADPPYNLQLNGQLY---RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
            + +DLI ADPPY +      +      +        +WD        +     W+    
Sbjct: 9   GECIDLIIADPPYVVSKESNFHTMRDRKNQRTGTHFGNWD-------IEFDNNEWISFAY 61

Query: 94  RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           +VLKP G+L V   +     I  + +   F   + ++W K+NPMP  R RR+    E + 
Sbjct: 62  KVLKPGGSLIVFNDFKKATIIYDIAERCGFEYKDTLIWHKTNPMPRNRDRRYIPNVEMIQ 121

Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL 213
           W         +TFN    K              P  SG         ++ HPTQKP  L+
Sbjct: 122 WYVK---KGKWTFNRQNEKYEG------CILSYPSESGG------GFKRYHPTQKPVKLI 166

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
             ++   +   DIILDPF GSGT+G  +  L R+FIG E+ ++Y+ IA +RI ++Q
Sbjct: 167 EYLIRIHSNENDIILDPFMGSGTTGVASLNLNRNFIGFEINEEYVQIANERIKNIQ 222


>gi|23428395|gb|AAL15431.1| DNA methyltransferase B [Moraxella nonliquefaciens]
 gi|52788778|gb|AAU87369.1| MnlI m6A-methyltransferase [Moraxella nonliquefaciens]
          Length = 239

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 75/248 (30%), Positives = 115/248 (46%), Gaps = 22/248 (8%)

Query: 20  KDKIIKGNSISVLEKLPAKSV--DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           K KI   N ++  ++L    +  + I  DPPY +      +  ++         WD    
Sbjct: 10  KIKIFHDNCLNTFKQLKNDKILINHIITDPPYAISSENNFHTMNNPRKGVDFGEWD---- 65

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
              +D     WL     +L  NG++ +  SY  I +I   +++L   + + ++W+K NPM
Sbjct: 66  ---WDFNPCLWLDDAYPLLDKNGSMVIFCSYRFISQIIHKIEHLGGVVKDVMIWQKQNPM 122

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           P    RR+    E +IWA  +  +K + FN  A K              P   G ER + 
Sbjct: 123 PRNINRRYVQDMEFIIWALKNKNSK-WVFNKPANKPYQRGFFQ-----TPTLLGKERTK- 175

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
                 HPTQKP AL+S I+   T   +IILDPF G G++G   + L R FIGIE  + +
Sbjct: 176 ------HPTQKPLALMSEIIQIHTNENEIILDPFMGVGSTGVACQGLNRYFIGIEQDKAW 229

Query: 258 IDIATKRI 265
            DIA +R+
Sbjct: 230 FDIAGQRL 237


>gi|331675763|ref|ZP_08376481.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H591]
 gi|331076537|gb|EGI47813.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H591]
          Length = 227

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 106/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++DLI  DPPY +       R   ++    TD W + +  E +
Sbjct: 3   RFVLGNCIDVMARIPDNAIDLILTDPPYLVGFRD---RSGRTIAGDKTDEWLQPACNEMF 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|226201122|ref|YP_002756736.1| putative methylase [Escherichia coli]
 gi|260763836|ref|YP_003237875.1| putative adenine DNA methyltransferase [Escherichia coli O26:H11
           str. 11368]
 gi|284000191|ref|YP_003377878.1| DNA modification methylase [Escherichia coli O26:H-]
 gi|219881751|gb|ACL52121.1| putative methylase [Escherichia coli]
 gi|257757261|dbj|BAI28762.1| putative adenine DNA methyltransferase [Escherichia coli O26:H11
           str. 11368]
 gi|283445131|gb|ADB20475.1| DNA modification methylase [Escherichia coli O26:H-]
 gi|323157010|gb|EFZ43142.1| DNA methylase family protein [Escherichia coli EPECa14]
 gi|325699424|gb|ADZ45155.1| DNA modification methylase [Escherichia coli]
          Length = 227

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 66/269 (24%), Positives = 108/269 (40%), Gaps = 45/269 (16%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +       R   ++   V D W + +S E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RSGRTIAGDVNDDWLQPASNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     +H I R   +     F +   +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWHRIDRFMAVWIRAGFSVAGHLVFTKNYTSKSAY 107

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
              R + A+                          +    R    +P   G +      G
Sbjct: 108 VAYRHECAY-----------------------ILAKGSPARPRNPLPDVLGWKY----SG 140

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ + Y   
Sbjct: 141 NRHHPTEKPVTSLQPLIESFTHPNSIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRA 200

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVA 289
             +R+A+VQ    ++       R EP  A
Sbjct: 201 GQQRLAAVQR--AMQQGAANDNRFEPEAA 227


>gi|171316523|ref|ZP_02905740.1| DNA methylase N-4/N-6 domain protein [Burkholderia ambifaria MEX-5]
 gi|171098357|gb|EDT43162.1| DNA methylase N-4/N-6 domain protein [Burkholderia ambifaria MEX-5]
          Length = 249

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 64/263 (24%), Positives = 106/263 (40%), Gaps = 32/263 (12%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP--------DHSLVDAVT 69
           +  +++ + +++SV+  +P   VDL+F DPPY+        R            +     
Sbjct: 8   DLINRVHQADALSVMRAMPDACVDLVFTDPPYSSGGTTSASRSQAPSSKYIGGDVKTVYP 67

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
           +         ++  +   WL    RV +    L     +  +  +   +Q   F      
Sbjct: 68  EFQHDTKDQRSWTFWCMTWLAEAYRVCRNEAHLACFVDWRQLPSLTDAIQAAGFTWRGVA 127

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
           VW K++     R   F    E L+WA+                        R+D  +P  
Sbjct: 128 VWDKTSGRTRPRMGGFAQQTEFLVWATK-------------------GAVRRADVYLPGV 168

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
             SERL +    K H T+KP  L +R +V     G ++LDPF GSGT  A AK+   ++I
Sbjct: 169 -FSERLSHP---KRHMTEKPAQL-AREVVRLAPAGGVVLDPFAGSGTFLAAAKEAGLNWI 223

Query: 250 GIEMKQDYIDIATKRIASVQPLG 272
           G E++  Y  +AT R+A +  L 
Sbjct: 224 GCELEPTYHQVATARLAELDALP 246


>gi|320007886|gb|ADW02736.1| DNA methylase N-4/N-6 domain protein [Streptomyces flavogriseus
           ATCC 33331]
          Length = 250

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 101/263 (38%), Gaps = 33/263 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ------LNGQLYRPDHSLVDAVTD---SW 72
            + +G++++VL+ LP +SV  +  DPPYN          G+  R  +   ++  D     
Sbjct: 4   TLHRGDALTVLKSLPDESVQAVITDPPYNSGGRTSSDRTGRTARAKYVTSNSAHDLANFP 63

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
            +     +Y ++    L    R    +    V   +         LQ   +     I W 
Sbjct: 64  GENRDQRSYRSWLTELLTEAYRASTEHAVAMVFTDWRQEPTTSDALQMAGWTWSGTIPWI 123

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K +  P   G +  +  E +IW                       +    D  +P   G 
Sbjct: 124 KPSSRPRKGGPKQDS--EFIIWGVK------------------GSLDNTRDLYLP---GH 160

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
                    ++H TQKP  ++ +++      G  +LDPF GSG++G  A +  R F+G+E
Sbjct: 161 YIASQPRKGRVHITQKPVEVMQQLVQ-VCPEGGTVLDPFTGSGSTGVAALREGRRFVGVE 219

Query: 253 MKQDYIDIATKRIASVQPLGNIE 275
           +   Y D+A +R+ S     + E
Sbjct: 220 LSVHYADVAEERLRSELTKDDFE 242


>gi|253801008|ref|YP_003034009.1| putative methylase [Escherichia coli Vir68]
 gi|253721185|gb|ACT33494.1| putative DNA methylase [Escherichia coli Vir68]
          Length = 227

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 103/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I+G+ + V+   P  +VD I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFIQGDCVRVMATFPGNAVDFILTDPPYLVGFRD---RQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPALPQKPLPDVLGWKYL---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHCAGQQRLAAVQ 209


>gi|157149435|ref|YP_001451479.1| putative methylase [Escherichia coli E24377A]
 gi|157076602|gb|ABV16313.1| DNA methylase family protein [Escherichia coli E24377A]
          Length = 227

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 106/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++DLI  DPPY +       R   ++    TD W + +  E +
Sbjct: 3   RFVLGNCIDVMARIPDNAIDLILTDPPYLVGFRD---RSGRTIAGDKTDEWLQPACNEMF 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|331703183|ref|YP_004399870.1| modification methylase [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|328801738|emb|CBW53891.1| modification methylase [Mycoplasma mycoides subsp. capri LC str.
           95010]
          Length = 400

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 64/293 (21%), Positives = 109/293 (37%), Gaps = 41/293 (13%)

Query: 7   LAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           +   + +  I    +++   + +  L++L   S+DL++ DPP+  Q    L    +    
Sbjct: 1   MKKLQKKGKIMIKLNQVYNIDCLDGLKQLKDNSIDLVYLDPPFFTQKAHFLVDKTNKKY- 59

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
              D W      + Y  F +  L+  +RVLK  G+++V         I  +L  +   I 
Sbjct: 60  FFNDIW---KDLKEYQEFLKIRLIEIKRVLKSTGSVFVHCDKTANHIIRVLLDEVFGSIN 116

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK-------------------------- 160
                       +   +   ++H+ +   S +                            
Sbjct: 117 FRSEIIWVYKRWSNSKKGLLDSHQNIYHYSKTNDFKFNVIYTDYSLTTNIDQILQLRVKD 176

Query: 161 ------AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
                  K    N        + V +   W IP  +   +         +PTQKP  LL 
Sbjct: 177 KNNKTVYKKDKNNNIVFSDLKKGVPLSDVWNIPFLNPKAK-----ERASYPTQKPIELLE 231

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           RI+   T   D++LDPF GSGTS   +K L R+FIG +   D IDI  +R+ +
Sbjct: 232 RIISLVTNENDVVLDPFVGSGTSVVASKLLNRNFIGFDNNIDAIDITNQRLKN 284


>gi|319901658|ref|YP_004161386.1| DNA methylase N-4/N-6 domain protein [Bacteroides helcogenes P
           36-108]
 gi|319416689|gb|ADV43800.1| DNA methylase N-4/N-6 domain protein [Bacteroides helcogenes P
           36-108]
          Length = 584

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 77/310 (24%), Positives = 125/310 (40%), Gaps = 41/310 (13%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
           +  +     N NS+      II  + + +L++LP+ SVD  FADPPYN+          +
Sbjct: 219 EIETFNYKGNTNSV------IINDDCLKILKELPSNSVDFCFADPPYNV----------N 262

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN---IFRIGTMLQ 119
              D   D  D       Y  +   W++   R++KP  T+ ++         F+    L 
Sbjct: 263 KKYDNCNDDIDII----EYFQWCDKWIMELARIIKPGKTVAILNIPQWAIRHFQCLNKLL 318

Query: 120 NLNFWILND-------IVWRKSNPMPNFRGRRFQN------AHETLIWASPSPKAKGYTF 166
               WI+ +       ++      +  F      +       H  L   S +   + Y  
Sbjct: 319 KFQDWIIWEGLSVPVRMIMPAHYSVICFTKGEANDLPFYHLKHSPLEINSINTYKEFYCI 378

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
               +K   ++  +    +  +     RL++      HPTQ P   + R++   T  GD+
Sbjct: 379 RNSCIKKRAKENIIDKVQVTNLWWDIHRLKHNSQRVDHPTQLPPMFMERLISIFTNEGDL 438

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
           +LDPF GSGT+   A+ L R + GIE+   Y DIA KR   +Q           GK +E 
Sbjct: 439 VLDPFNGSGTTSLCAEMLGRKYFGIELSSKYYDIAIKRHVDLQ-----AGINPFGKHSET 493

Query: 287 RVAFNLLVER 296
             A N LV+R
Sbjct: 494 PKAKNSLVKR 503


>gi|307139302|ref|ZP_07498658.1| putative methylase [Escherichia coli H736]
 gi|331643296|ref|ZP_08344428.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H736]
 gi|331037523|gb|EGI09746.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H736]
          Length = 227

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 102/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I G+ + V+   P  +VD I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFILGDCVRVMATFPGNAVDFILTDPPYLVGFRD---RSGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPALPQKPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IG+E+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGVELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|260174737|ref|ZP_05761149.1| cell cycle regulated site-specific DNA-methyltransferase protein
           [Bacteroides sp. D2]
 gi|315922997|ref|ZP_07919237.1| modification methylase HinfI [Bacteroides sp. D2]
 gi|313696872|gb|EFS33707.1| modification methylase HinfI [Bacteroides sp. D2]
          Length = 224

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 69/249 (27%), Positives = 105/249 (42%), Gaps = 35/249 (14%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            +KI   + +  L+++P  SVD I  DPPY L +     +               F    
Sbjct: 3   TNKIYNEDCLEALKRVPDNSVDCIITDPPYFLGMTHNGQKGS-------------FKDLS 49

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
               F R   L   RV KP   ++    +   +     L +L     N IVW K +    
Sbjct: 50  ICKPFYRDLFLEFNRVKKPGACVYFFTDWRG-YAFYYPLFDLYIGASNMIVWNKQSGP-- 106

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
             G  +   HE +++      + G T                 + +  I S +   +  +
Sbjct: 107 --GNHYAFIHELILFHCGKGVSIGAT-----------------NIIDNIRSFASGAKLVE 147

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           GEK+HPTQKP AL+ +++  STKPGD+ILD F GSGT+   A +  R+F+ +E  + Y  
Sbjct: 148 GEKVHPTQKPVALIRKLIEDSTKPGDLILDTFGGSGTTAVAAIESGRNFVLMEQDEIYYF 207

Query: 260 IATKRIASV 268
            A KRI   
Sbjct: 208 TAQKRIKDA 216


>gi|86151256|ref|ZP_01069471.1| DNA methylase [Campylobacter jejuni subsp. jejuni 260.94]
 gi|85841603|gb|EAQ58850.1| DNA methylase [Campylobacter jejuni subsp. jejuni 260.94]
          Length = 236

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 68/249 (27%), Positives = 106/249 (42%), Gaps = 23/249 (9%)

Query: 22  KIIKGNSISVLEKLPAKSV--DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           ++   + + +  +   +++  D I  DPPYN+      +             WDK     
Sbjct: 6   RLFNDDCLQIALQFKKENIIFDSIITDPPYNISKENNFHTLKSKRQGVDFGEWDKEFD-- 63

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                T  W+     ++  NG++ +  SY  +  I   L    F   + + W K+NPMP 
Sbjct: 64  -----TCEWIEYFAPLVTKNGSMIIFCSYLYLSFIIKKLGICGFITKDILRWEKTNPMPR 118

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
              RR+    E  IWA  +     +TFN        E   ++  +   + SG E+     
Sbjct: 119 NVNRRYVQDCEFAIWAVKNGA--KWTFNKPI-----ESKYLKPCFKTSLVSGEEKTS--- 168

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
               HPTQK   L+  I+   T   D+I DPF GSGT G  +  L R FIGIE+ ++Y  
Sbjct: 169 ----HPTQKSLKLMREIIQIHTNENDLICDPFMGSGTMGVASVNLGRKFIGIELDKEYFQ 224

Query: 260 IATKRIASV 268
           IA  RI ++
Sbjct: 225 IAKDRIQNL 233


>gi|193063119|ref|ZP_03044211.1| DNA methylase family protein [Escherichia coli E22]
 gi|195940129|ref|ZP_03085511.1| putative methylase [Escherichia coli O157:H7 str. EC4024]
 gi|192931378|gb|EDV83980.1| DNA methylase family protein [Escherichia coli E22]
          Length = 227

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 104/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I G+ + V+   P  +VD I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFILGDCVRVMATFPDNAVDFILTDPPYLVGFRD---RSGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R  +  +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|298378889|ref|ZP_06988771.1| methylase [Escherichia coli FVEC1302]
 gi|301046627|ref|ZP_07193760.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 185-1]
 gi|298280498|gb|EFI22001.1| methylase [Escherichia coli FVEC1302]
 gi|300301419|gb|EFJ57804.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 185-1]
          Length = 227

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 62/254 (24%), Positives = 103/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +       R   ++   V D W + +S E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RSGRTIAGDVNDDWLQPASNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK N  +     ++ I R     +   F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKNALMVSFYGWNRIDRFMAAWKRAGFSVVGHLVFTKNYTSKSAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
              R + A+        +   P P   G+ +                             
Sbjct: 108 VAYRHECAYILAKGRPALPQKPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|331660288|ref|ZP_08361223.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA206]
 gi|331052555|gb|EGI24591.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA206]
          Length = 227

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 104/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I G+ + V+   P  +VD I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFILGDCVRVMATFPDNAVDFILTDPPYLVGFRD---RQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R  +  +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|194430357|ref|ZP_03062846.1| DNA methylase family protein [Escherichia coli B171]
 gi|194411606|gb|EDX27939.1| DNA methylase family protein [Escherichia coli B171]
          Length = 227

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 105/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R  +  +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPRLPQKPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|21221931|ref|NP_627710.1| DNA methylase [Streptomyces coelicolor A3(2)]
 gi|4678636|emb|CAB41209.1| putative DNA methylase [Streptomyces coelicolor A3(2)]
          Length = 248

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/263 (21%), Positives = 101/263 (38%), Gaps = 33/263 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ------LNGQLYRPDHSLVDAVTD---SW 72
            + +G++++VL+ LP +SV  +  DPPYN          G+  R  +   ++  D     
Sbjct: 4   TLHRGDALTVLKSLPDESVQAVITDPPYNSGGRTSSDRTGRTARAKYVTSNSAHDLANFP 63

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
            +     +Y ++    L    R    +    V   +         LQ   +     I W 
Sbjct: 64  GENRDQRSYRSWLTELLTEAYRASTEHAVTMVFTDWRQEPTTSDALQMAGWTWSGTIPWI 123

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K +  P   G +  +  E +IW                       +    D  +P   G 
Sbjct: 124 KPSSRPRKGGPKQDS--EFIIWGVK------------------GSLDNTRDLYLP---GH 160

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
                    ++H TQKP  ++ +++      G  +LDPF GSG++G  A +  R F+G+E
Sbjct: 161 YIASQPRKGRVHITQKPVEVMQQLVQ-VCPEGGTVLDPFTGSGSTGVAALREGRHFVGVE 219

Query: 253 MKQDYIDIATKRIASVQPLGNIE 275
           +   Y D+A +R+ +     + E
Sbjct: 220 LSAHYADVAEERLRAELTKDDFE 242


>gi|318056937|ref|ZP_07975660.1| DNA methylase [Streptomyces sp. SA3_actG]
 gi|318075574|ref|ZP_07982906.1| DNA methylase [Streptomyces sp. SA3_actF]
          Length = 248

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 62/263 (23%), Positives = 101/263 (38%), Gaps = 33/263 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS-LVDAVTDS--------W 72
            + +G+++S+L+ LP +SV  +  DPPYN        R   +     VT +         
Sbjct: 4   TLHRGDALSILKNLPDESVHAVITDPPYNSGGRTSAERTSRTARAKYVTGNARHTLRTFP 63

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
            +     AY A+    L  C R    +    V   +         LQ   +     + W 
Sbjct: 64  GENRDQRAYRAWLTDLLTQCYRASVEHAVACVFTDWRQEPTTTDALQMAGWTWQGTMPWI 123

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K    P   G  F+ + E ++W                       +    D  +P   G 
Sbjct: 124 KPASRPRRGG--FKQSSEFIVWGVK------------------GSLDTTRDLYLP---GD 160

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
                   +++H TQKP  ++ R LV +     ++LDPF GSGT+G  A +  R F+GIE
Sbjct: 161 YTASQPRKDRIHITQKPIDVM-RTLVRACPEDGVVLDPFTGSGTTGVAALREGRGFVGIE 219

Query: 253 MKQDYIDIATKRIASVQPLGNIE 275
           + + Y  +A  R+A       +E
Sbjct: 220 LSEHYATLAETRMARELRQDEVE 242


>gi|261403553|ref|YP_003247777.1| DNA methylase N-4/N-6 domain protein [Methanocaldococcus vulcanius
           M7]
 gi|261370546|gb|ACX73295.1| DNA methylase N-4/N-6 domain protein [Methanocaldococcus vulcanius
           M7]
          Length = 293

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/283 (20%), Positives = 106/283 (37%), Gaps = 54/283 (19%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   + +  +++L  KS+D++   PPYN+ +    Y  + S               E 
Sbjct: 4   NKIYCMDCLEGMKQLKDKSIDVVITSPPYNIGIRYNKYSDNLSR--------------ED 49

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYH-----------NIFRIGTMLQNLNFWILNDI 129
           Y  +    +   +RVLK +G+ ++   Y            N+ R    LQN   WI +  
Sbjct: 50  YLNWIEEVVREIKRVLKDDGSFFINVGYTAKDPWIAFDVANVIRKHFKLQNTIHWIKSIA 109

Query: 130 VWRKSNP--------------MPNFRGRRFQNAHETLIWASPSPKAKGYTF--------- 166
           + ++                  P    R     HE +   + +   K             
Sbjct: 110 IQKEDVGDYPNIIGDIAVGHYKPINSDRFLSIMHEYIFHFTKNGNVKLDKLAIGVPYQDK 169

Query: 167 -NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPG 224
            N        +     + W IP     E +++K+ E+ HP   P  L    + +   K  
Sbjct: 170 SNIKRFNRKGDLRDRGNTWFIPY----ETIQSKEKERPHPATFPPKLPEMCIKLHGVKKT 225

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           +++LDPF G G++     +L  ++IG E+ + Y  +A +RI  
Sbjct: 226 NLVLDPFMGIGSTAVACIRLGVNYIGFEIDEYYCRVAEERIKK 268


>gi|218441866|ref|YP_002380195.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
 gi|218174594|gb|ACK73327.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
          Length = 597

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 113/291 (38%), Gaps = 49/291 (16%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
           +  NS  +W++K+I  + +  L  +P+  VDLI   PPY                     
Sbjct: 7   QQFNSSQDWQNKVILSDCLQSLRAMPSHLVDLIVTSPPYADSRKKTYGG----------- 55

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW------VIGSYHNIFRIGTML--QNLN 122
                 S + Y  +        +R+LKP+GT        V+    + + I  +L  Q   
Sbjct: 56  -----ISPDDYVNWFLPISQELKRILKPDGTFILNIKEKVVNGERHNYVIKLILELQKQG 110

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK---------- 172
           +    + +W K N  P     RF++A E  +  +   K K Y                  
Sbjct: 111 WLWTEEYIWHKKNCYPGKWPNRFRDAWERCLQFNKQKKFKMYQERVMIPMGDWANSRLKK 170

Query: 173 ------------AANEDVQMRSDWL---IPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
                         +   +  S+W+   +   +    L  +   K H    P++L S  +
Sbjct: 171 LSDTDKIRDHSKVESGFGKNISNWIGRSMAYPTNVLHLATECNNKNHSATFPKSLPSWFI 230

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
              T+  D++LDPF GSGT+   AK+L R +IGIE+K++Y ++A   I   
Sbjct: 231 KLFTETSDLVLDPFLGSGTTCIAAKELGRHYIGIEIKKEYYELAVANIEKA 281


>gi|323692831|ref|ZP_08107058.1| modification DNA methylase [Clostridium symbiosum WAL-14673]
 gi|323503145|gb|EGB18980.1| modification DNA methylase [Clostridium symbiosum WAL-14673]
          Length = 318

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 73/324 (22%), Positives = 118/324 (36%), Gaps = 91/324 (28%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            DKI  G+S+ VL+ LP  +VD     PPY      + Y  D  +         + ++ E
Sbjct: 5   TDKIYCGDSLQVLQTLPENAVDCCVTSPPY---YALRDYGADGQI--------GREATPE 53

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI---------------------------- 111
            Y +   A     +RVL P GT W+  +                                
Sbjct: 54  EYVSRITAVFHEVKRVLTPEGTCWLNIADTYCGTGSKADHQDPKYPKGRNGQQVAFNHRA 113

Query: 112 ------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
                       + +   L+   +++ + I+W K+NPMP     R    +E +   +   
Sbjct: 114 PGCKPKDLIGIPWLVALALRGDGWYLRSSIIWHKTNPMPESTRDRPTRCYEYVFLLTK-- 171

Query: 160 KAKGYTFNYDA-----------------------------------LKAANEDVQMRSDW 184
            +K Y +++ A                                   +    E      + 
Sbjct: 172 -SKKYFYDWQAVAEPIAPTTAGRLKSGVGKGNKYNVTVPGQNQPQKINRPREKGAYADEL 230

Query: 185 LIPICS--GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           + P+ S     ++ N      H    P  L    +++    G I+LDPFFGSGT+G VAK
Sbjct: 231 ISPVRSRRNVWQINNVAYHGGHFAAYPPKLAETCILAGCPVGGIVLDPFFGSGTTGMVAK 290

Query: 243 KLRRSFIGIEMKQDYIDIATKRIA 266
           +L R +IGIE+  DY D+A +RI 
Sbjct: 291 RLNRRYIGIELNPDYCDLAKQRIG 314


>gi|71275466|ref|ZP_00651752.1| DNA methylase N-4/N-6 [Xylella fastidiosa Dixon]
 gi|71900970|ref|ZP_00683083.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
 gi|71163766|gb|EAO13482.1| DNA methylase N-4/N-6 [Xylella fastidiosa Dixon]
 gi|71729275|gb|EAO31393.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
          Length = 243

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 30/252 (11%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQ-------LNGQLYRPDHSLVDAVTDSWD-KF 75
            +G+++ +L  + + SVD +  DPPY                +  +S    +   +D  F
Sbjct: 12  HEGDALRLLCDIDSASVDAVITDPPYCSGAMRMADRFKPTRTKYLNSTAKHIAPDFDCDF 71

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
                + A++  WL  CRRV +P G L V   +  +  +   +Q+   W    IV     
Sbjct: 72  RDHRGFLAWSSQWLSECRRVTRPGGVLLVFTDWRMLPTLTDAVQSAG-WAWQGIVVWDKT 130

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P    +  RF++  E ++WAS          N  A                    G    
Sbjct: 131 PACRPQLGRFRSQAEFIVWASCGLM------NPKAHPV--------------TPVGVFAT 170

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                EK H   KP AL+  ++     P   +LDPF GSGT+G  A +    FIG+E+  
Sbjct: 171 GTAPREKRHQVGKPLALMEHLIKI-VPPTSTVLDPFAGSGTTGVAALRAGHQFIGMEISP 229

Query: 256 DYIDIATKRIAS 267
            Y D+A +R+A 
Sbjct: 230 WYCDVAKQRLAD 241


>gi|167554071|ref|ZP_02347812.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205321633|gb|EDZ09472.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 225

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 62/254 (24%), Positives = 105/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I+GN + ++   P  +VD I  DPPY +       R   ++    TD W + +S E Y
Sbjct: 3   RFIQGNCVHIMSGFPDNAVDFILTDPPYLVGFRD---RQGRTIAGDKTDEWLQPASHEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  L     ++ + R     +   F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALLISFYGWNRVDRFMAAWKKAGFSVVGHLVFTKTYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T PG I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPGAIVLDPFAGSGSTCVAALQAGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+V+
Sbjct: 196 QYHRTGQQRLAAVR 209


>gi|298253810|ref|ZP_06977399.1| DNA methylase N-4/N-6 domain-containing protein [Gardnerella
           vaginalis 5-1]
 gi|297532146|gb|EFH71119.1| DNA methylase N-4/N-6 domain-containing protein [Gardnerella
           vaginalis 5-1]
          Length = 422

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 96/258 (37%), Gaps = 37/258 (14%)

Query: 20  KDKIIKGNS--ISVLEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K +II G++  +   + L     V+L+  DPPYN+   G   +  +          DKF 
Sbjct: 178 KHRIICGDATKLETYKTLLENTKVNLVVTDPPYNVNYEGAAGKIKND-----NMENDKFY 232

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
                  F     +   + +  + +++V  +           Q+  F++    +W+   P
Sbjct: 233 ------QFLFNSFVNMEQAMADDASIYVFHADTEGLNFRKAFQDAGFYLSGCCIWK--KP 284

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
                   +Q  HE  ++                   A        ++  P         
Sbjct: 285 SLVLGRSPYQWQHEPCLYGWKKKGK--------HKWYAGRKETSVWEFEKP--------- 327

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                  HPT KP ALL+  + +S+    ++LDPF GSG++    ++  R    IE+ + 
Sbjct: 328 --KKNADHPTMKPIALLAYPIKNSSMTNSLVLDPFAGSGSTLIACEQTGRICYAIELDEK 385

Query: 257 YIDIATKRIASVQPLGNI 274
           Y D+  KR   ++ +GN 
Sbjct: 386 YCDVIVKRY--IEQVGND 401


>gi|84623268|ref|YP_450640.1| site-specific DNA-methyltransferase [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|84367208|dbj|BAE68366.1| site-specific DNA-methyltransferase [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 233

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 65/247 (26%), Positives = 99/247 (40%), Gaps = 35/247 (14%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL---------NGQLYRPDHSLVDAVTD 70
           K+++++G++++++  L A S D +  DPPY                 Y  D    D V D
Sbjct: 2   KNQLLQGDALTIMPTLEANSFDALITDPPYASGGLTAAARARPPSTKYCRDGGHADFVGD 61

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
             D+      + A+ + WL  C R+LK    + +   +  +      LQ   F      V
Sbjct: 62  ERDQRG----HLAWMQLWLSECARLLKEGAPVLLFTDWRQLPLTTDALQAAGFKWRGVAV 117

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W K+  +    G RF+N  E ++W S                          D   P+  
Sbjct: 118 WDKTEGVRPQLG-RFRNQAEYIVWGSKGGM--------------------PLDRRAPVLP 156

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           G  R      +K H T KP  L+ R LV   + G  ILDPF GSGT+   A+     + G
Sbjct: 157 GVVRTPVLKADKHHLTGKPTELM-RSLVRICEAGGRILDPFAGSGTTLVAAELEGYRWTG 215

Query: 251 IEMKQDY 257
           +EM Q Y
Sbjct: 216 VEMTQHY 222


>gi|323974648|gb|EGB69764.1| DNA methylase [Escherichia coli TW10509]
          Length = 227

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 105/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RQGRTIAGDKTDDWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R  +  +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPRLPQKPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|49188496|ref|YP_025343.1| Pac25I methylase [Pseudomonas alcaligenes]
 gi|5123478|gb|AAD40332.1|U88088_6 Pac25I methylase [Pseudomonas alcaligenes]
          Length = 300

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 66/282 (23%), Positives = 115/282 (40%), Gaps = 57/282 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + +G++++VL +LP+ SV  +   PPY    +             + +      +   +
Sbjct: 27  TLFEGDALTVLRRLPSGSVRCVVTSPPYWGLRDY-----------GIEEQIGLEGTMPQF 75

Query: 82  DAFTRAWLLACRRVLKPNGTLW-VIGSYHN------------------------------ 110
                A     RRVL  +GTLW  IG  +                               
Sbjct: 76  LHRLVAIFAEVRRVLTDDGTLWLNIGDGYTSGNRGYRAPDKKNPARAMDVRPDTPEGLKP 135

Query: 111 ------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
                  +R+   LQ+  +++ +DIVW K N MP     R   +HE L   +    ++ Y
Sbjct: 136 KDLIGIPWRLAFALQDDGWYLRSDIVWNKPNAMPESVKDRPARSHEFLFMLTK---SEKY 192

Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
            +++ A++   +   +R+            +  K     H    P  L+   + +ST+PG
Sbjct: 193 YYDWQAVREPADGGGLRNRR------SVWHVNTKPFAGAHFATFPPDLIRPCIQASTEPG 246

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           D +LDPFFGSGT G V +   R ++GIE+  +Y+ +A  R+ 
Sbjct: 247 DYVLDPFFGSGTVGLVCQDENRQYVGIELNPEYVALAADRLQ 288


>gi|257468517|ref|ZP_05632611.1| putative methyltransferase [Fusobacterium ulcerans ATCC 49185]
 gi|317062777|ref|ZP_07927262.1| DNA-methyltransferase [Fusobacterium ulcerans ATCC 49185]
 gi|313688453|gb|EFS25288.1| DNA-methyltransferase [Fusobacterium ulcerans ATCC 49185]
          Length = 255

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 73/272 (26%), Positives = 114/272 (41%), Gaps = 42/272 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +   + I  L+K+   SVDL+F DPPYNL    +              + D + + E Y 
Sbjct: 3   LYNCDVIDGLKKVENASVDLLFIDPPYNLGKKYK-------------GTIDHWKTDEEYL 49

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            +  +WL    + LKPNG L+ + S          L+     +   I   + +       
Sbjct: 50  EWCYSWLEVSLQKLKPNGCLYFMSSTQYGAYFDIYLREKMHILSRII--WEYDSSGVQAK 107

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNY--------------------DALKAANEDVQMRS 182
           + F + +E +I+A      K YTFN+                    +     NE+    +
Sbjct: 108 KHFGSLYEPIIFAV--MNKKNYTFNFKDIMVATKTGAQRKLIDYRKNPPVPYNEEKVPGN 165

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
            W  P      +   +     HP+QKPEALL RI+  ST   D ILD F GS + G V K
Sbjct: 166 VWYFPRVRYRMKEYVE-----HPSQKPEALLERIIKVSTNETDTILDLFAGSFSLGMVCK 220

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
           +L R +IGIE  ++Y  +  +R+   + + N 
Sbjct: 221 RLNRKYIGIEKSKEYYTVGIERLKDKKEVLNE 252


>gi|227528860|ref|ZP_03958909.1| adenine-specific methyltransferase [Lactobacillus vaginalis ATCC
           49540]
 gi|227351222|gb|EEJ41513.1| adenine-specific methyltransferase [Lactobacillus vaginalis ATCC
           49540]
          Length = 322

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 78/288 (27%), Positives = 130/288 (45%), Gaps = 39/288 (13%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
           A  E   S+ +  +K+I G+S  V+++LP+ S+DL   DPPYNL          +   D 
Sbjct: 27  AKKEKSFSLEQVTNKVINGDSFQVMDQLPSHSIDLALVDPPYNL----------NKKYDG 76

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
           +T    K +    Y  +T  W+   + +LK + +++V   +     +  +L+   F I N
Sbjct: 77  MTFKQMKPA---EYQQYTEDWINKLKPLLKASASVYVFADWETSIVLAPVLEQ-YFTIKN 132

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK--------------------GYTFN 167
            I W++           ++N+ E + + +  P                       G+  +
Sbjct: 133 RITWQREKGRGALTN--WKNSSEDIWFLTVDPHDYVFNVDQVKQRRPVVAPYKEDGHAKD 190

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
           + A KA N    M S+    I   S    +      HPTQKPE L+++++++S+ PGD+I
Sbjct: 191 WQATKAGNFRDTMPSNLWDDI---SIPYWSMPENTDHPTQKPEKLMAKVILASSNPGDLI 247

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
            DPF G+G+S   AKKL R FIGIE    Y      R+       +I+
Sbjct: 248 FDPFAGAGSSLVTAKKLGRHFIGIEQSLLYCAWGQYRLNKANNDPHIQ 295


>gi|237721554|ref|ZP_04552035.1| adenine methyltransferase [Bacteroides sp. 2_2_4]
 gi|229449350|gb|EEO55141.1| adenine methyltransferase [Bacteroides sp. 2_2_4]
          Length = 224

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 68/249 (27%), Positives = 105/249 (42%), Gaps = 35/249 (14%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            ++I   + +  L+++P  SVD I  DPPY L +     +               F    
Sbjct: 3   TNQIYNEDCLEALKRVPDNSVDCIITDPPYFLGMTHNGQKGS-------------FKDLS 49

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
               F R   L   RV KP   ++    +   +     L +L     N IVW K +    
Sbjct: 50  ICKPFYRDLFLEFNRVKKPGACVYFFTDWRG-YAFYYPLFDLYLGASNMIVWNKQSGP-- 106

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
             G  +   HE +++      + G T                 + +  I S +   +  +
Sbjct: 107 --GNHYAFIHELILFHCGKGVSIGAT-----------------NIIDNIRSFASGAKLVE 147

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           GEK+HPTQKP AL+ +++  STKPGD+ILD F GSGT+   A +  R+F+ +E  + Y  
Sbjct: 148 GEKIHPTQKPVALIRKLIEDSTKPGDLILDTFGGSGTTAVAAIESGRNFVLMEQDEIYYF 207

Query: 260 IATKRIASV 268
            A KRI   
Sbjct: 208 TAQKRIKDA 216


>gi|154149830|ref|YP_001403448.1| DNA methylase N-4/N-6 domain-containing protein [Candidatus
           Methanoregula boonei 6A8]
 gi|153998382|gb|ABS54805.1| DNA methylase N-4/N-6 domain protein [Methanoregula boonei 6A8]
          Length = 292

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 67/263 (25%), Positives = 104/263 (39%), Gaps = 20/263 (7%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
             I  + ++I  G+++SVL  +P++SVDL+   PPYN    G  Y  D           D
Sbjct: 32  PEIEPFVNRIFCGDALSVLSGMPSESVDLVITSPPYNF---GHAYAQDPH---------D 79

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWV-----IGSY-HNIFRIGTMLQNLNFWILN 127
               +  Y A   A    C RVL+P G + V        Y      I   L  L      
Sbjct: 80  DTREWNDYFATLNAVWTECVRVLRPGGRMAVNVQPLFSDYVPTHHIISNQLLGLGLLWKA 139

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
           + +W K+N    +       +             + +           ED+ + SD    
Sbjct: 140 EFLWEKNNYNAKYTAWGSWKSPSMPYIKYTWEFVEIFDKGTHKKTGRREDIDITSDEFKE 199

Query: 188 ICSGSERLR--NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
              G  ++   ++  E  HP   PE L  R++   +   DI++DPF G+GT+   A K  
Sbjct: 200 WVIGRWKIPPEHRMKEFDHPAMFPEELPRRVMKLFSYKNDIVIDPFNGAGTTTLAAAKCG 259

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R FIGI++   Y D A +R+   
Sbjct: 260 RRFIGIDVSHQYCDTAVRRLREA 282


>gi|315619240|gb|EFU99816.1| DNA methylase family protein [Escherichia coli 3431]
          Length = 227

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 104/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +    +  R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRDRFGR---TIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFGVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPALPQKPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+ +VQ
Sbjct: 196 QYHRAGQQRLTAVQ 209


>gi|42560738|ref|NP_975189.1| DNA methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|42492234|emb|CAE76831.1| DNA methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
          Length = 662

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 63/288 (21%), Positives = 108/288 (37%), Gaps = 31/288 (10%)

Query: 7   LAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           +   + +  I    +++   + +  L++L   S+DL++ DPP+  Q    L    +    
Sbjct: 1   MKKLQKKGKIMIKLNQVYNIDCLDGLKQLKDNSIDLVYLDPPFFTQKAHFLVDKTNKKY- 59

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
              D W      + Y  F +  L+  +RVLK  G+++V         I  +L  +   I 
Sbjct: 60  FFNDIW---KDLKEYQEFLKIRLIEIKRVLKSTGSVFVHCDKTANHIIRVLLDEIFGSIN 116

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ------- 179
                       +   +   ++H+ +   S +   K      D     N D         
Sbjct: 117 FRSEIIWVYKRWSNSKKGLLDSHQNIYHYSKTNDFKFNVIYTDYSLTTNIDQILQLRVKD 176

Query: 180 --------------------MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVS 219
                                +   L  + +             +PTQKP  LL RI+  
Sbjct: 177 KNNKIVYKKDKNNNVVFSDLKKGVPLSDVWNIPFLNPKAKERTSYPTQKPIELLERIISL 236

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            T   D++LDPF GSGTS   +K L R+FIG ++  D IDI  +R+ +
Sbjct: 237 VTNENDVVLDPFVGSGTSVVASKLLNRNFIGFDINIDAIDITNQRLKN 284


>gi|323485979|ref|ZP_08091310.1| hypothetical protein HMPREF9474_03061 [Clostridium symbiosum
           WAL-14163]
 gi|323400546|gb|EGA92913.1| hypothetical protein HMPREF9474_03061 [Clostridium symbiosum
           WAL-14163]
          Length = 318

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 67/324 (20%), Positives = 111/324 (34%), Gaps = 91/324 (28%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            DKI  G+S+ VL+ LP   +D     PPY      + Y  D  +         + ++ E
Sbjct: 5   TDKIYCGDSLQVLQALPENCIDCCVTSPPY---YGLRDYGADGQI--------GREATPE 53

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI---------------------------- 111
            Y +   A     +RVL P GT W+  +                                
Sbjct: 54  EYVSRITAVFHEVKRVLTPEGTCWLNIADTYCGTGSKAGHQDPKYPKGRNGQQVAVNHRA 113

Query: 112 ------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
                       + +   L+   +++ + I+W K+NPMP     R    +E +   +   
Sbjct: 114 PGCKPKDLIGIPWLVALALRGDGWYLRSSIIWYKTNPMPESCKDRPTRCYEYVFLLTK-- 171

Query: 160 KAKGYTFNYDA-----------------------------------LKAANEDVQMRSDW 184
             K Y +++ A                                   +           + 
Sbjct: 172 -TKKYYYDWQAVAEPIAPATAGRLKSGVGKGNKYAATVPGQNQPQKINRPRRKGAYTDEM 230

Query: 185 LIPICS--GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           + P+ S     ++        H    P  L    +++    G I+LDPF GSGT+ A AK
Sbjct: 231 ISPVRSRRNVWQINTTSYRGGHFAAFPPKLAETCILAGCPVGGIVLDPFLGSGTTAAAAK 290

Query: 243 KLRRSFIGIEMKQDYIDIATKRIA 266
            L R +IGIE+  DY ++A +RI 
Sbjct: 291 SLSRRYIGIELNPDYCELAKQRIG 314


>gi|282866406|ref|ZP_06275451.1| DNA methylase N-4/N-6 domain protein [Streptomyces sp. ACTE]
 gi|282558802|gb|EFB64359.1| DNA methylase N-4/N-6 domain protein [Streptomyces sp. ACTE]
          Length = 248

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 54/263 (20%), Positives = 101/263 (38%), Gaps = 33/263 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ------LNGQLYRPDHSLVDAVTD---SW 72
            + +G++++VL+ LP +SVD +  DPPYN          G+  R  +   ++  D     
Sbjct: 4   TLHRGDALTVLKSLPDQSVDAVITDPPYNSGGRTSADRTGRTARAKYVTSNSAHDLANFP 63

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
            +     +Y ++    L    R    +    V   +         LQ   +     + W 
Sbjct: 64  GENRDQRSYRSWLTELLTESYRASTEHAVAMVFTDWRQEPTTTDALQMAGWTWSGTMPWI 123

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K    P   G +  +  E ++W                       +    D  +P   G 
Sbjct: 124 KPASRPRKGGPKQDS--EFIVWGVK------------------GSLDNTRDLYLP---GH 160

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
                    ++H TQKP  ++ +++      G  +LDPF GSG++G  A +  R F+G+E
Sbjct: 161 YIASQPRKSRVHITQKPVEIMQQLVQ-VCPEGGTVLDPFTGSGSTGVAALREGRRFVGVE 219

Query: 253 MKQDYIDIATKRIASVQPLGNIE 275
           +   Y D+A +R+ +     + +
Sbjct: 220 LSSHYADVAEERLRAELTKDDFD 242


>gi|209543157|ref|YP_002275386.1| DNA methylase N-4/N-6 domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530834|gb|ACI50771.1| DNA methylase N-4/N-6 domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 225

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 63/255 (24%), Positives = 108/255 (42%), Gaps = 41/255 (16%)

Query: 12  NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
           +  +  ++++ I+ G+S+ ++ +LP  +VD I  DPPY +   G+  R   +  +A    
Sbjct: 3   DTTTATDFRNTILNGDSVQLMRRLPRNAVDFILTDPPYLVNYQGRDGRKVRNDDNA---- 58

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
                       + R       RVLK  G       ++ I       +   F ++  IV+
Sbjct: 59  -----------RWLRPAFNQMHRVLKWGGFAVSFYGWNRIDLFADAWKAAGFRMVGHIVF 107

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
           RKS    +   R    +   L   + +P AK                 +     +P    
Sbjct: 108 RKSYSSSSRFLRYEHESAYLLAKGNVTPPAKP----------------IPDVLDMPY--- 148

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
                   G KLHPTQKP A L  ++ +    G ++LDPF GSG+S   A+ L R ++G+
Sbjct: 149 -------SGNKLHPTQKPVAALLPLVEAFCPVGGLVLDPFAGSGSSLVAAQHLGRDWLGM 201

Query: 252 EMKQDYIDIATKRIA 266
           E+  ++   AT+R+A
Sbjct: 202 ELDPEHAATATRRLA 216


>gi|296115112|ref|ZP_06833753.1| DNA methylase N-4/N-6 domain protein [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295978213|gb|EFG84950.1| DNA methylase N-4/N-6 domain protein [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 288

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 65/274 (23%), Positives = 113/274 (41%), Gaps = 41/274 (14%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           E   ++++G+ + VL ++PA SVD++   PPYN+ L    Y           D+ D+   
Sbjct: 25  EGPHQLVRGDCLKVLRRMPADSVDVVVTSPPYNIGLRYSTY----------NDTLDE--- 71

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVI--GSYHNIF---------RIGTMLQNLNFWIL 126
            + Y  +  A     RRV+KP+G+ ++   GS    +         R    LQN   W+ 
Sbjct: 72  -QGYLDWMVAISRQVRRVMKPDGSFFLNIAGSSAQPWLPFELMVRLRALFALQNHISWVK 130

Query: 127 NDIVW--RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA---------AN 175
           +  +      +  P    R     HE L   + S        +                 
Sbjct: 131 SISIGAETFGHFKPVNSHRYLHRNHEHLFHLTRSGHVNLQRLDVGVPYMDKSNIVRRGHR 190

Query: 176 EDVQMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
           +D + R D W +P     E ++ K  +  HP   P +L    +    +P  ++LDPF G+
Sbjct: 191 QDRRCRGDTWFVPY----ETVQGKAQKYNHPGTFPVSLPQMCIRLHGRPDAVVLDPFMGT 246

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           GT+   A +     IGI++   Y++IA +R+ + 
Sbjct: 247 GTTIVAALREGARGIGIDLDSGYVEIARERVRAA 280


>gi|330907823|gb|EGH36348.1| adenine-specific methyltransferase [Escherichia coli AA86]
 gi|330907869|gb|EGH36392.1| adenine-specific methyltransferase [Escherichia coli AA86]
          Length = 227

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 99/254 (38%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I G+ + V+   P  +VD I  DPPY +    +  R                 + +  
Sbjct: 3   RFILGDCVRVMATFPGNAVDFILTDPPYLVGFRDRSGRT---------------IAGDKT 47

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
           D + +       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 48  DEWLQPACNEMHRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPALPQKPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|209921999|ref|YP_002296072.1| putative methylase [Escherichia coli SE11]
 gi|209915177|dbj|BAG80250.1| conserved hypothetical protein [Escherichia coli SE11]
          Length = 227

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 105/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RSGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|305667807|ref|YP_003864281.1| DNA methylase family protein [Escherichia coli]
 gi|304655556|emb|CBM42214.1| DNA methylase family protein [Escherichia coli]
          Length = 227

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 106/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R  +  +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|209916856|ref|YP_002291176.1| putative methylase [Escherichia coli SE11]
 gi|209915282|dbj|BAG80354.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|324017660|gb|EGB86879.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 117-3]
          Length = 227

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 105/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RSGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFVAAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|307150290|ref|YP_003885674.1| DNA methylase N-4/N-6 domain-containing protein [Cyanothece sp. PCC
           7822]
 gi|306980518|gb|ADN12399.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7822]
          Length = 351

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 70/300 (23%), Positives = 117/300 (39%), Gaps = 51/300 (17%)

Query: 4   KNSLAINENQN--SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
            NSL   E Q   S+ EW++++I  + + VL ++P+  VDLI   PPY            
Sbjct: 8   TNSLTDVEQQQIKSLQEWQNRMILSDCLPVLREMPSNLVDLIVTSPPYADSRKKTYGG-- 65

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG--------SYHNIFR 113
                          S   Y  +        +R+LKP GT  +           ++ + +
Sbjct: 66  --------------ISPNDYIDWFLPIAQELKRILKPEGTFILNIKEKVVKGERHNYVIK 111

Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK- 172
           +   +Q   +    + +W K N  P     RF++A E  +  +   K K Y         
Sbjct: 112 LILAMQQQGWLWTEEYIWHKKNCYPGKWPNRFRDAWERCLQFNRQKKFKMYQERVMVPMG 171

Query: 173 ---------------------AANEDVQMRSDWL---IPICSGSERLRNKDGEKLHPTQK 208
                                  +   +  S+WL   +   +    L  +   K H    
Sbjct: 172 DWANSRLKKLSDTDKIRDPSKVESGFGKNISNWLGRSMAYPTNVLHLATECNNKNHSAAF 231

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           P++L S  +   T+  D++LDPF GSGT+   AK+L R ++GIE+K++Y D+A   I   
Sbjct: 232 PKSLPSWFINLFTETSDLVLDPFVGSGTTCIAAKELGRHYLGIEIKKEYYDLAVSNIEKA 291


>gi|400289|sp|P30774|MTX1_XANCC RecName: Full=Modification methylase XcyI; Short=M.XcyI; AltName:
           Full=N-4 cytosine-specific methyltransferase XcyI
 gi|155371|gb|AAA27608.1| methylase [Xanthomonas campestris]
          Length = 300

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 67/282 (23%), Positives = 115/282 (40%), Gaps = 57/282 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + +G++++VL +LP+ SV  +   PPY    +  +       V           +   +
Sbjct: 27  TLFEGDALTVLRRLPSGSVRCVVTSPPYWGLRDYGIEEQIGLEV-----------TMPQF 75

Query: 82  DAFTRAWLLACRRVLKPNGTLW-VIGSYHN------------------------------ 110
                A     +RVL  +GTLW  IG  +                               
Sbjct: 76  LHRLVAIFAEVKRVLTDDGTLWLNIGDGYTSGNRGYRAPDKKNPARAMDVRPDTPVGLKP 135

Query: 111 ------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
                  +R+   LQ+  +++ +DIVW K N MP     R   +HE L   +    ++ Y
Sbjct: 136 KDLMGIPWRLAFALQDDGWYLRSDIVWNKPNAMPESVKDRPARSHEFLFMFTK---SEKY 192

Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
            +++ A +   +   +R+            +  K     H T  P  L+   + +ST+PG
Sbjct: 193 FYDWQAAREPADGGGLRNRR------SVWNVNTKPFAGAHFTTFPPELIRPCIHASTEPG 246

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           D +LDPFFGSGT G V +   R ++GIE+  +Y+ +A  R+ 
Sbjct: 247 DYVLDPFFGSGTVGLVCQDENRQYVGIELNPEYVTLAADRLQ 288


>gi|219586051|ref|YP_002456145.1| putative methylase [Escherichia coli]
 gi|226201029|ref|YP_002756641.1| DNA methylase family protein [Escherichia coli]
 gi|218931634|gb|ACL12407.1| hemagglutinin-associated protein [Escherichia coli]
 gi|219881658|gb|ACL52028.1| DNA methylase family protein [Escherichia coli]
          Length = 227

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 106/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R  +  +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHHAGQQRLAAVQ 209


>gi|332981877|ref|YP_004463318.1| DNA methylase N-4/N-6 domain-containing protein [Mahella
           australiensis 50-1 BON]
 gi|332699555|gb|AEE96496.1| DNA methylase N-4/N-6 domain protein [Mahella australiensis 50-1
           BON]
          Length = 314

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 81/294 (27%), Positives = 129/294 (43%), Gaps = 43/294 (14%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ--LNGQLYRPD 61
            + L       S+ +  D+ I  +  S    LP + V+L+F DPPYN+    NG  +   
Sbjct: 26  SSRLLYLNKPVSVSDITDRTINQDIFSAARFLPQQFVNLLFVDPPYNMSKTFNGNTFNK- 84

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
                          S + Y  +  +WL      LKP  +L++ G + +   I  ++   
Sbjct: 85  --------------MSMDQYTQWLESWLTLLIPALKPIASLYICGDWRSSAAIFEVMSK- 129

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK-------AA 174
            F I N I W +     +     ++NA E + + +    +  YTFN + +K         
Sbjct: 130 YFIIRNRITWEREKGRGSKTN--WKNASEDIWFCT---VSNKYTFNAENVKLKRLVKAPY 184

Query: 175 NEDVQMRSDWLIPICSGSE-------------RLRNKDGEKLHPTQKPEALLSRILVSST 221
            +      DW     +                   +      HPTQKPE LL++I+++S+
Sbjct: 185 KDGSGQPKDWHYDGKNKYRLTYPSNIWTDITVPFWSMPENTHHPTQKPEKLLAKIILASS 244

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
            PGDIILDPF GSGT+  VAKKL R ++GIE+   Y  +A KR+A+     +I+
Sbjct: 245 NPGDIILDPFLGSGTTSVVAKKLGRRYVGIEIDNTYCCLAEKRLAAADRDRSIQ 298


>gi|325201351|gb|ADY96805.1| adenine-specific methyltransferase HpaI [Neisseria meningitidis
           M01-240149]
          Length = 289

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 120/293 (40%), Gaps = 49/293 (16%)

Query: 1   MSQKNSLAINENQNSIFEWKDK---IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQL 57
           MS +N   + + Q  +  +++    I +G+ I +++K+   S  +    PPYN+      
Sbjct: 14  MSLEN-FQLIKTQLGVPSYENDRVAIYQGDCIQLMDKISKGSFQMTITSPPYNIGK---- 68

Query: 58  YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
                         ++     E Y  +   W+ +   + + +G  W+   Y ++ + G  
Sbjct: 69  -------------EYESILDLEHYLEWCERWMQSIHHLTEDSGCFWLNLGYLHVEKKGLA 115

Query: 118 -------LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
                      NF++L ++VW  +  +      RF   +E L+W   +P    YTFN DA
Sbjct: 116 VPIPYLLWDKTNFFLLQEVVWNYAAGVAC--RNRFSPRNEKLLWYVKNPA--KYTFNLDA 171

Query: 171 LKAANEDVQM----------------RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
           ++  N                        W I   + S R R+      HP Q P  L+ 
Sbjct: 172 VRDPNVKYPNQKKNGKLKCNPLGKNPTDVWQIAKVT-SGRNRSSRERTAHPAQFPLELIE 230

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           RI+ +S+   D+ILDPF GSGT+     K  R  IG E+  +YIDI  +R   
Sbjct: 231 RIIRASSNQNDVILDPFIGSGTTALAGLKNNRFVIGFEINDEYIDIIKERFKE 283


>gi|56404028|ref|NP_858331.2| putative methylase [Shigella flexneri 2a str. 301]
 gi|309783591|ref|ZP_07678241.1| DNA methylase family protein [Shigella dysenteriae 1617]
 gi|56383106|gb|AAL72431.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|281603957|gb|ADA76940.1| hypothetical protein SFxv_5045 [Shigella flexneri 2002017]
 gi|308928487|gb|EFP73944.1| DNA methylase family protein [Shigella dysenteriae 1617]
 gi|333006557|gb|EGK26058.1| DNA methylase family protein [Shigella flexneri K-218]
 gi|333017307|gb|EGK36626.1| DNA methylase family protein [Shigella flexneri K-304]
 gi|333017399|gb|EGK36715.1| DNA methylase family protein [Shigella flexneri K-227]
          Length = 227

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 106/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R  +  +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|293420945|ref|ZP_06661379.1| DNA methylase [Escherichia coli B088]
 gi|291324815|gb|EFE64231.1| DNA methylase [Escherichia coli B088]
          Length = 227

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 103/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKSAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
              R + A+        +   P P   G+ +                             
Sbjct: 108 VAYRHECAYILAKGRPALPQKPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|119487543|ref|ZP_01621153.1| DNA-methyltransferase [Lyngbya sp. PCC 8106]
 gi|119455712|gb|EAW36848.1| DNA-methyltransferase [Lyngbya sp. PCC 8106]
          Length = 291

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 69/290 (23%), Positives = 115/290 (39%), Gaps = 48/290 (16%)

Query: 3   QKNSLAINENQNSIFEWKDK---IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR 59
            +N L   ++      ++D+   I +G+ + ++ +LP     L    PPYN+        
Sbjct: 1   MRNELEEFKSFLGSPAYEDQDVLIYQGDCLKLMNQLPEGYFSLTVTSPPYNIGK------ 54

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM-- 117
                       ++   S E Y A+   W+    R    +G  W+   Y ++        
Sbjct: 55  -----------EYESVLSVEDYIAWMVEWIAQVYRCTSRDGAFWLNLGYLSLPHQAKAIP 103

Query: 118 -----LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
                   + F+++ +IVW  S  +        +N  E  +W      A  Y FN D ++
Sbjct: 104 IPYLIWDKVPFYLIQEIVWNYSAGVAGKLFFSPRN--EKFLWYVKD--ANHYIFNLDDVR 159

Query: 173 AANEDVQM----------------RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
             N                        W IP  +  +   +K+    HP Q P  L+SRI
Sbjct: 160 DPNVKYPHQKKNGKLKCNTKGKNPTDVWQIPKVTSGKNRSSKE-RTSHPAQFPIQLVSRI 218

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           +++S+  GDI+ DPF GSG++   A +  R  IG E+   YID+A KRI 
Sbjct: 219 ILASSNLGDIVFDPFLGSGSTAEAAIRNGRKIIGFEINDLYIDMAIKRIK 268


>gi|122879126|ref|YP_200356.6| site-specific DNA-methyltransferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 233

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 66/247 (26%), Positives = 99/247 (40%), Gaps = 35/247 (14%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL---------NGQLYRPDHSLVDAVTD 70
           K+++++G+++++L  L A S D +  DPPY                 Y  D    D V D
Sbjct: 2   KNQLLQGDALTILPTLEANSFDALITDPPYASGGLTAAARARPPSTKYCRDGGHADFVGD 61

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
             D+      + A+ + WL  C R+LK    + +   +  +      LQ   F      V
Sbjct: 62  ERDQRG----HLAWMQLWLSECARLLKEGAPVLLFTDWRQLPLTTDALQAAGFKWRGVAV 117

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W K+  +    G RF+N  E ++W S                          D   P+  
Sbjct: 118 WDKTEGVRPQLG-RFRNQAEYIVWGSKGGM--------------------PLDRRAPVLP 156

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           G  R      +K H T KP  L+ R LV   + G  ILDPF GSGT+   A+     + G
Sbjct: 157 GVVRTPVLKADKHHLTGKPTELM-RSLVRICEAGGRILDPFAGSGTTLVAAELEGYRWTG 215

Query: 251 IEMKQDY 257
           +EM Q Y
Sbjct: 216 VEMTQHY 222


>gi|323959010|gb|EGB54680.1| DNA methylase [Escherichia coli H489]
          Length = 227

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 103/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +       R   ++   V D W + +S E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RSGRTIAGDVNDDWLQPASNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK N  +     ++ I R     +   F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKNALMVSFYGWNRIDRFMAAWKRAGFSVVGHLVFTKNYTSKSAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
              R + A+        +   P P   G+ +                             
Sbjct: 108 VAYRHECAYILAKGRPALPQKPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IG+E+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGVELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|50346323|ref|NP_052910.2| putative methylase [Plasmid R100]
 gi|133756470|ref|YP_001096426.1| putative methylase [Escherichia coli]
 gi|161343771|ref|NP_957571.2| putative methylase [Escherichia coli]
 gi|301328054|ref|ZP_07221208.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 78-1]
 gi|89033295|gb|ABD59973.1| hypothetical protein [Escherichia coli]
 gi|300845452|gb|EFK73212.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 78-1]
          Length = 227

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 103/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I G+ + V+   P  +VD I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFILGDCVRVMATFPGNAVDFILTDPPYLVGFRD---RSGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|315657003|ref|ZP_07909888.1| DNA methylase N-4/N-6 domain protein [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492395|gb|EFU82001.1| DNA methylase N-4/N-6 domain protein [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 432

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 63/269 (23%), Positives = 121/269 (44%), Gaps = 34/269 (12%)

Query: 21  DKIIKGNSISVLE-KLP--AKSVDLIFADPPYNLQLNG-----QLYRPDHSLVDAVTDSW 72
           ++I  G ++ V+   LP    SVD I+ DPP+N   +        +R D      V    
Sbjct: 48  NRIYVGENLQVMSGLLPQYEGSVDCIYIDPPFNSGTDYVQRIRTHHRGDSKRTITVKQYG 107

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIV 130
           D++ + + Y       L   R+ + P GT+++   +H+   +  ++  +     ++N+IV
Sbjct: 108 DRWQTAD-YIQNLYERLTLLRQFMSPTGTIFLHCDWHSSAALRLVMDEVFGGSNLINEIV 166

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE-------------- 176
           W  ++       R F + H+T+++ +     + Y F+ DA++ A                
Sbjct: 167 WAYASGGG--SRRAFGHKHDTILFYARD--RRRYYFDPDAVRVAYNAAISPKRRKLFNPQ 222

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
            +     W IP         + D    +PTQKP  ++ R + ++  PG +++D F GSG+
Sbjct: 223 GMVAPDVWQIPRPPN-----HSDTWVGYPTQKPLEVMQRAIDAACPPGGLVMDCFAGSGS 277

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           +   A +L R F+GIE     + +A +R+
Sbjct: 278 TLVAAAQLGRRFLGIERNSLGVHLARRRL 306


>gi|284041579|ref|YP_003391919.1| DNA methylase N-4/N-6 domain protein [Conexibacter woesei DSM
           14684]
 gi|283945800|gb|ADB48544.1| DNA methylase N-4/N-6 domain protein [Conexibacter woesei DSM
           14684]
          Length = 287

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 63/271 (23%), Positives = 111/271 (40%), Gaps = 24/271 (8%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL--------------NGQLYRPDHSLVD 66
           D ++ G+++ VL  LP  + D+I+ DPP+N                   +          
Sbjct: 19  DLVVHGDNLDVLPLLPDGAFDMIYIDPPFNTGKAQRRRTLVFEPDVEGDRTGFGGRRYRS 78

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFW 124
            +  +     +F+ Y  F    L   RR+L  +GTL+    Y        +L  +     
Sbjct: 79  QLLQALAYGDTFDDYLGFVAPRLEHARRLLAEHGTLYFHIDYREAHYCKLLLDEIFGRDC 138

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY------TFNYDALKAANEDV 178
            LN+I+W            R+   H+T++    +P A  +         Y A      + 
Sbjct: 139 FLNEIIWAYDYGGKP--RSRWPAKHDTILVYVRTPGAHHFDAEAVDREPYMAPGLVTPEK 196

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
             R      +   +    N   +  +PTQKP  ++ R++ +S++PG   LD F GSGT G
Sbjct: 197 VARGKRPTDVWWHTIVPTNGYEKTGYPTQKPAGVVRRMVAASSRPGGWCLDFFAGSGTLG 256

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           AVA  L R ++ ++   + ID+  KR+ + +
Sbjct: 257 AVAAGLGRRYVLVDSHAEAIDVMRKRLGTAE 287


>gi|78189365|ref|YP_379703.1| DNA modification methylase-like [Chlorobium chlorochromatii CaD3]
 gi|78171564|gb|ABB28660.1| DNA modification methylase-like protein [Chlorobium chlorochromatii
           CaD3]
          Length = 264

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 63/262 (24%), Positives = 117/262 (44%), Gaps = 30/262 (11%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL--------NGQLYRPDHSLVDAV 68
            ++ + II  +S++V+E++P K +D+    PPYNL+         N +  +   + +   
Sbjct: 5   DDYINTIICADSLTVMEQMPDKCIDIAVTSPPYNLKNSTGNGMKANTKSGKWAGNALQNG 64

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
              ++     + Y  +    L A  R+LK +G ++    Y++ +R+   L      I+ D
Sbjct: 65  YSHYNDNIPNDEYAEWQYNCLKAMYRLLKDDGAIF----YNHKWRVQNGLIQDRTDIIRD 120

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
           +  R+        G  F   +    +      AK       + K   +       W    
Sbjct: 121 LPVRQIIIWKRKGGINFNPGYFLPTYEVIYLIAKP------SFKLLPKANAYGDVWEF-- 172

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
                    ++ +  HP   P AL+ RI+ S++    IILDPF GSGT+   A +L+R++
Sbjct: 173 --------TQEMKNNHPAPFPVALIDRIISSTS--AQIILDPFMGSGTTAVAALQLQRNY 222

Query: 249 IGIEMKQDYIDIATKRIASVQP 270
           IGI++  DY ++A +RI ++ P
Sbjct: 223 IGIDISPDYCEMAKERILNLNP 244


>gi|28916734|gb|AAD39134.2|AF123569_2 NmeSIM [Neisseria meningitidis]
 gi|325129400|gb|EGC52233.1| adenine-specific methyltransferase HpaI [Neisseria meningitidis
           OX99.30304]
 gi|325135457|gb|EGC58076.1| DNA methylase [Neisseria meningitidis M0579]
 gi|325207331|gb|ADZ02783.1| DNA methylase [Neisseria meningitidis NZ-05/33]
          Length = 283

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 120/293 (40%), Gaps = 49/293 (16%)

Query: 1   MSQKNSLAINENQNSIFEWKDK---IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQL 57
           MS +N   + + Q  +  +++    I +G+ I +++K+   S  +    PPYN+      
Sbjct: 8   MSLEN-FQLIKTQLGVPSYENDRVAIYQGDCIQLMDKISKGSFQMTITSPPYNIGK---- 62

Query: 58  YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
                         ++     E Y  +   W+ +   + + +G  W+   Y ++ + G  
Sbjct: 63  -------------EYESILDLEHYLEWCERWMQSIHHLTEDSGCFWLNLGYLHVEKKGLA 109

Query: 118 -------LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
                      NF++L ++VW  +  +      RF   +E L+W   +P    YTFN DA
Sbjct: 110 VPIPYLLWDKTNFFLLQEVVWNYAAGVAC--RNRFSPRNEKLLWYVKNPA--KYTFNLDA 165

Query: 171 LKAANEDVQM----------------RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
           ++  N                        W I   + S R R+      HP Q P  L+ 
Sbjct: 166 VRDPNVKYPNQKKNGKLKCNPLGKNPTDVWQIAKVT-SGRNRSSRERTAHPAQFPLELIE 224

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           RI+ +S+   D+ILDPF GSGT+     K  R  IG E+  +YIDI  +R   
Sbjct: 225 RIIRASSNQNDVILDPFIGSGTTALAGLKNNRFVIGFEINDEYIDIIKERFKE 277


>gi|134296760|ref|YP_001120495.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134139917|gb|ABO55660.1| DNA methylase N-4/N-6 domain protein [Burkholderia vietnamiensis
           G4]
          Length = 433

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 59/279 (21%), Positives = 111/279 (39%), Gaps = 29/279 (10%)

Query: 3   QKNSLAINENQNSIFEWKDKI------IKGNSISVLEKLPAKSVDLIFADPPYNLQ---- 52
            KN+   N + NS+  +  KI      I  + ++ ++ LP  S+DL+  DPPY +     
Sbjct: 1   MKNTNKSNTSSNSVKNYNLKIKGEGQLINNDCLAGMKNLPDNSIDLVLTDPPYGIADKNR 60

Query: 53  ---LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS-Y 108
              +N +  +P  +      D  D F   + +  + + ++    RV K  G++ +     
Sbjct: 61  TTFVNSKGGKPITTQEAWGNDFQDNFCDVDGFWEWFKPFMSEMARVTKDGGSIILFLDAK 120

Query: 109 HNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
           +    +  + +       N+I + K+N           ++ E  IW +       Y    
Sbjct: 121 YQGHFVYLIEKEFGLKWRNNIFFTKTNARTLNMKGYA-HSCEQAIWFTKGKTPFTYNNPM 179

Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
            AL+  N +V   S                  E  HP +K + ++  ++   +K G +IL
Sbjct: 180 QALRKNNPNVFTGSVG--------------SKETKHPCEKYKWMIEPLIERHSKKGQLIL 225

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           DPF GS ++     K  R  I  E  + + ++A +RI  
Sbjct: 226 DPFGGSASTLVYGIKQGRKVIAFENSEKFFEMAKERIMK 264


>gi|323964339|gb|EGB59821.1| DNA methylase [Escherichia coli M863]
          Length = 227

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 62/254 (24%), Positives = 102/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I G+ + V+   P   VD I  DPPY +   G   R   +L    TD W + +  E Y
Sbjct: 3   RFILGDCVRVMATFPDNVVDFIITDPPYLV---GFCDRSGRTLAGDRTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ I R     +   F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRIDRFMAAWKRAGFSVVGHLVFTKNYTSKSAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
              R + A+        +   P P  +G+ +                             
Sbjct: 108 VAYRHECAYILAKGRPALPQKPLPDVQGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP + L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVSSLQPLIESFTHPNAIVLDPFAGSGSTCVAALRSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|256810845|ref|YP_003128214.1| DNA methylase N-4/N-6 domain protein [Methanocaldococcus fervens
           AG86]
 gi|256794045|gb|ACV24714.1| DNA methylase N-4/N-6 domain protein [Methanocaldococcus fervens
           AG86]
          Length = 292

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 57/283 (20%), Positives = 105/283 (37%), Gaps = 54/283 (19%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   + +  +++L  KSVD++   PPYN+ +    Y  +                 + 
Sbjct: 4   NKIYCMDCLEGMKQLKDKSVDVVVTSPPYNIGIKYNKYSDNLGR--------------DD 49

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYH-----------NIFRIGTMLQNLNFWILNDI 129
           Y  +    +   +RVLK +G+ ++   Y            N+ R    LQN   WI +  
Sbjct: 50  YLNWIEEVVREIKRVLKDDGSFFINIGYTAKDPWIAFDVANVIRKHFKLQNTIHWIKSIA 109

Query: 130 VWRKSNP--------------MPNFRGRRFQNAHETLIWASPSPKAKGYTF--------- 166
           + ++                  P    R     HE +   + +   K             
Sbjct: 110 IQKEDVGNYPNIIGDIAVGHYKPINSDRFLSIMHEYIFHFTKNGNVKLDKLAIGVPYQDK 169

Query: 167 -NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPG 224
            N        +     + W IP     E +++K+ E+ HP   P  L    + +   K  
Sbjct: 170 SNIKRFNRKGDLRDRGNTWFIPY----ETIQSKEKERPHPATFPSKLPEMCIKLHGIKKT 225

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           +++LDPF G G++     +L  ++IG E+ + Y  +A +RI  
Sbjct: 226 NLVLDPFMGIGSTAIACIRLGVNYIGFEIDEYYCRVAEERIKK 268


>gi|88602175|ref|YP_502353.1| DNA methylase N-4/N-6 [Methanospirillum hungatei JF-1]
 gi|88187637|gb|ABD40634.1| DNA methylase N-4/N-6 [Methanospirillum hungatei JF-1]
          Length = 451

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 74/288 (25%), Positives = 110/288 (38%), Gaps = 29/288 (10%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            E+ D+II G+S  +L +LP   +DLI   PPYN  L                      +
Sbjct: 150 DEYLDQIICGDSEEILSRLPENCIDLIITSPPYNFGLEYSSSG--------------DSA 195

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWV-----IGSY-HNIFRIGTMLQNLNFWILNDIV 130
            ++AY            RVLK  G   V        Y      I +   N       +I+
Sbjct: 196 HWQAYLDKLYRVFAQGIRVLKYGGRFIVNVQPLFSDYIPLHHLISSFFMNQKMIWKGEIL 255

Query: 131 WRKSNP----MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           W K+N           +   + +    W       KG        + A+   +    W++
Sbjct: 256 WEKNNYNCKYTSWGSWKSPSSPYLKYTWEFIEIFCKGTLKKSGKSEDADISDEEFKSWVV 315

Query: 187 PICS-GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
              S G ER         HP   PE L+ R L   +  GDIILDPF G+GT+ AVA +  
Sbjct: 316 AKWSIGPERRMKHFN---HPAMFPEELVERCLKLFSFQGDIILDPFNGAGTTTAVAARTN 372

Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
           R FIG+++  +Y D A +R+  + P  +        K +E  V  +  
Sbjct: 373 RHFIGLDISSEYCDCARERLLQI-PASSDRKKEKQKKTSEKSVLTSSF 419


>gi|209543775|ref|YP_002276004.1| DNA methylase N-4/N-6 domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531452|gb|ACI51389.1| DNA methylase N-4/N-6 domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 226

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 61/258 (23%), Positives = 109/258 (42%), Gaps = 41/258 (15%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
           +  N  +  ++++ I+ G+S+ ++  +P  SVD I  DPPY +   G+  R   +  +A 
Sbjct: 1   MTGNTITATDFRNTILNGDSVDLMRAMPRNSVDFILTDPPYLVNYQGRDGRKVRNDDNA- 59

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
                          + R  +    RVLK  G       ++ I       +   F ++  
Sbjct: 60  --------------RWLRPAVNQMHRVLKWGGLAVSFYGWNKIDLFADAWKAAGFRMVGH 105

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
           IV+RKS    +   R     HE+    +     + +    D +  +              
Sbjct: 106 IVFRKSYASSSGFLRY---EHESAYLLAKGNAMRPHQPVPDVIDMSY------------- 149

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
                      G +LHPTQKP A L  ++ +    G ++LDPF GSG+S   A+ L R +
Sbjct: 150 ----------SGNRLHPTQKPVAALLPLVDTFCPAGGLVLDPFCGSGSSLVAAQHLGREW 199

Query: 249 IGIEMKQDYIDIATKRIA 266
           +G+E+  ++  +AT+R+A
Sbjct: 200 LGMELDAEHAAMATRRLA 217


>gi|170729631|ref|YP_001775064.1| site-specific DNA-methyltransferase [Xylella fastidiosa M12]
 gi|167964424|gb|ACA11434.1| site-specific DNA-methyltransferase [Xylella fastidiosa M12]
          Length = 243

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 63/254 (24%), Positives = 106/254 (41%), Gaps = 30/254 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDAVT-----DSWD 73
           ++ +G+++ +L  + + +VD +  DPPY    ++++ +        +++ T     D   
Sbjct: 10  RLHEGDALRLLCDIDSANVDAVITDPPYCSGAMRMSDRFKPTKRKYINSTTKHIAPDFDC 69

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
            F     + A++  WL  CRRV +P G L V   +  +  +   +Q+   W    IV   
Sbjct: 70  DFRDHRGFLAWSSQWLSECRRVTRPGGVLLVFTDWRMLPTLTDAVQSAG-WAWQGIVVWD 128

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
             P    +  RF++  E ++WAS          N  A                    G  
Sbjct: 129 KTPACRPQLVRFRSQAEFIVWASCGLM------NPKAHTV--------------TPVGVF 168

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
                  EK H   KP AL+  ++     P   ILDPF GSGT+G  A +    FIG+E+
Sbjct: 169 TTGTAPREKRHQVGKPLALMEHLIKI-VPPTSTILDPFAGSGTTGVAALRAGHRFIGMEL 227

Query: 254 KQDYIDIATKRIAS 267
              Y D+  +R+A 
Sbjct: 228 SPWYCDVTKQRLAD 241


>gi|331647347|ref|ZP_08348440.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M605]
 gi|331043753|gb|EGI15890.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M605]
          Length = 227

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 62/254 (24%), Positives = 103/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+  +P  ++D I  DPPY +       R   ++   V D W + +S E Y
Sbjct: 3   RFVLGNCIDVMATIPDNAIDFILTDPPYLVGFRD---RSGRTIAGDVNDDWLQPASNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  L     ++ I       +   F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALLVSFYGWNRIDLFMAAWKRAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAAFQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|315586029|gb|ADU40410.1| site-specific DNA-methyltransferase (adenine-specific)
           [Helicobacter pylori 35A]
          Length = 260

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 72/261 (27%), Positives = 113/261 (43%), Gaps = 40/261 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   +  + L+KL  KSVDL   DPPYNL++                 SWD F + E 
Sbjct: 4   NKIYIEDVFTFLDKLEDKSVDLAIIDPPYNLKIA----------------SWDSFKNDEE 47

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           +  F+ AW+      LK  G+ ++  +  N       L++     LN I W K +   N 
Sbjct: 48  FLTFSYAWIDKMLPKLKDTGSFYIFNTPFNCALFLAYLRHKKVHFLNFITWVKKDGFAN- 106

Query: 141 RGRRFQNAHETLIWAS-----------------------PSPKAKGYTFNYDALKAANED 177
             +R+ +A E++++ S                          ++KG   N        + 
Sbjct: 107 AKKRYNHAQESILFYSMHKKNYTFNADEIRTAYESTERIKHAQSKGILKNNKRWFPNPKG 166

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                 W I      E+   K  +  HP+ KP+AL+ R++ +S+   D+ILD F GSG +
Sbjct: 167 KLCLDVWEITSQRHVEKENGKILKPKHPSIKPKALIERMIKASSHKNDLILDLFSGSGMT 226

Query: 238 GAVAKKLRRSFIGIEMKQDYI 258
             VAK L R+FIG E   +Y+
Sbjct: 227 SLVAKSLGRNFIGCETHAEYV 247


>gi|168770617|ref|ZP_02795624.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4486]
 gi|300993882|ref|ZP_07180587.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 200-1]
 gi|189360495|gb|EDU78914.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4486]
 gi|300305030|gb|EFJ59550.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 200-1]
          Length = 227

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 105/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R  +  +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+ +VQ
Sbjct: 196 QYHRAGQQRLTAVQ 209


>gi|238027668|ref|YP_002911899.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           glumae BGR1]
 gi|237876862|gb|ACR29195.1| DNA methylase N-4/N-6 domain protein [Burkholderia glumae BGR1]
          Length = 250

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 74/266 (27%), Positives = 106/266 (39%), Gaps = 42/266 (15%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           +W D+   G+   +L  +PA   D + ADPPY                   +  WD+   
Sbjct: 3   DWLDRCHFGDCRELLPMIPAGVADAVIADPPYG----------------DTSLKWDRVVD 46

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
                     W+ AC R LKP G++WV GS   I     +++   F    DIVWRK N  
Sbjct: 47  ---------GWIDACARTLKPAGSIWVFGSLRFIAPTFELMERAGFRYSQDIVWRKQNGT 97

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE---------DVQMRSDWLIPI 188
             F   RF+  HE  +       +  Y        A  +                     
Sbjct: 98  G-FHNDRFRRVHEHAVLFYRGAWSDVYKCPQVTHDARKKQVRRKTRAAHWGDIDRGHYTS 156

Query: 189 CSGSER-------LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
             G  R       +RN+ G  LHPTQKP  L+  ++  S  PG I+LDPF GSG++   A
Sbjct: 157 VDGGPRLRTSVIDMRNEHGHALHPTQKPVDLIELMVRYSVPPGGIVLDPFLGSGSTALAA 216

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIAS 267
            +  R +IG E+  D  D+  +R+  
Sbjct: 217 IRNGRHWIGCELDPDCRDMQAQRLQQ 242


>gi|71276089|ref|ZP_00652370.1| DNA methylase N-4/N-6 [Xylella fastidiosa Dixon]
 gi|71163172|gb|EAO12893.1| DNA methylase N-4/N-6 [Xylella fastidiosa Dixon]
          Length = 243

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 30/252 (11%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQ-------LNGQLYRPDHSLVDAVTDSWD-KF 75
            +G+++ +L  + + SVD +  DPPY                +  +S    +   +D  F
Sbjct: 12  HEGDALRLLCDIDSASVDAVITDPPYCSGAMRMADRFKPTRTKYLNSTAKHIAPDFDCDF 71

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
                + A++  WL  CRRV +P G L V   +  +  +   +Q+   W    IV     
Sbjct: 72  RDHRGFLAWSSQWLSECRRVTRPGGVLLVFTDWRMLPTLTDAVQSAG-WAWQGIVVWDKT 130

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P    +  RF++  E ++WAS          N  A                    G    
Sbjct: 131 PACRPQLGRFRSQAEFIVWASCGLM------NPKAHPV--------------TPVGVFAT 170

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                EK H   KP AL+  ++     P   +LDPF GSGT+G  A +    FIG+E+  
Sbjct: 171 GTAPREKRHQVGKPLALMEHLVKI-VPPTSTVLDPFAGSGTTGVAALRAGHQFIGMEISP 229

Query: 256 DYIDIATKRIAS 267
            Y D+A +R+A 
Sbjct: 230 WYCDVAKQRLAD 241


>gi|328948974|ref|YP_004366311.1| DNA methylase N-4/N-6 domain protein [Treponema succinifaciens DSM
           2489]
 gi|328449298|gb|AEB15014.1| DNA methylase N-4/N-6 domain protein [Treponema succinifaciens DSM
           2489]
          Length = 314

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 79/291 (27%), Positives = 131/291 (45%), Gaps = 37/291 (12%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
           K+ L    N ++  +  ++ + G+ + +LE  P    DLI  DPPYNL  N         
Sbjct: 24  KSRLLTESNISAETDIVNRTLNGDILKMLEFTPDGFADLIIIDPPYNLSKN--------- 74

Query: 64  LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
                        S E YD +   W  A  + LK NG+L++ G +     +   ++    
Sbjct: 75  ----FNGMKFASRSQEGYDEYLATWFPAVCKKLKSNGSLYICGDWKCTSSLQRAVERE-L 129

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE------- 176
            +LN I W++           ++N  E + +A  +P    Y F+ +A+K   +       
Sbjct: 130 TVLNRITWQREKGRGAKSN--WKNGMEDIWFAVKNPA--DYYFDVEAVKMKRKVLAPYKA 185

Query: 177 -------DVQMRSDWLIPICSGSE-----RLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
                  D +   ++ +   S           +      HPTQKPE L ++++++S++PG
Sbjct: 186 DGKPKDWDEESEGNFRLTYPSNFWDDISVPFWSMPENTDHPTQKPEKLYAKLILASSRPG 245

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           DI+ DPF GSGT+  VAKKL R F GIE  ++Y   A KR+A  +   +I+
Sbjct: 246 DIVFDPFLGSGTASVVAKKLGRRFCGIEQNEEYCLWAEKRLALAETDKSIQ 296


>gi|295837375|ref|ZP_06824308.1| DNA (cytosine-5-)-methyltransferase [Streptomyces sp. SPB74]
 gi|197696113|gb|EDY43046.1| DNA (cytosine-5-)-methyltransferase [Streptomyces sp. SPB74]
          Length = 248

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 57/262 (21%), Positives = 99/262 (37%), Gaps = 33/262 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ------LNGQLYRPDHSLVDAVTD---SW 72
            + +G+++++L+ LP +SV  +  DPPYN          G+  R  +   ++  D     
Sbjct: 4   TLHRGDALTILKTLPDESVHAVITDPPYNSGGRTSSERTGRTARAKYVTSNSAHDLATFP 63

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
            +     +Y ++    L    R    +    V   +         LQ   +     I W 
Sbjct: 64  GENRDQRSYRSWLTELLTEAYRAATEHSVAMVFSDWRQEPTTTDALQMAGWTWSGTISWI 123

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K    P   G   +   E + W                       +    D  +P   G 
Sbjct: 124 KPASRPRKGG--PKQDTEFVTWGVK------------------GTLDNTRDLYLP---GH 160

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
                   +++H TQKP  ++ R LV     G  +LDPF GSG++G  A +  R+F+G+E
Sbjct: 161 YIASQPRKDRVHITQKPVEIM-RQLVKVCPEGGTVLDPFTGSGSTGVAALREGRNFLGVE 219

Query: 253 MKQDYIDIATKRIASVQPLGNI 274
           +   Y DIA +R+ +     + 
Sbjct: 220 LSTHYADIAERRLRAELTQDDF 241


>gi|86169484|gb|ABC86981.1| MseI methylase [Micrococcus sp. NEB 446]
          Length = 300

 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 122/296 (41%), Gaps = 30/296 (10%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD------HSLVDAVT 69
             +  D I++ +++  ++ LP  S  +I+ DPP+N     +L           S V    
Sbjct: 8   TPDGDDLIVEADNLDFIQTLPDASFRMIYIDPPFNTGRTQRLQSLKTTRSVTGSRVGFKG 67

Query: 70  DSWDKFSS--------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
            ++D   S        F  Y +F    LL   R+L P+G L++   Y  +     +L  +
Sbjct: 68  QTYDTVKSTLHSYDDAFTDYWSFLEPRLLEAWRLLTPDGALYLHLDYREVHYAKVVLDAM 127

Query: 122 --NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN--------YDAL 171
                 LN+++W            ++   H+ ++     P    Y +N        Y A 
Sbjct: 128 FGRESFLNELIWAYDYGA--RSKSKWPTKHDNILVYVKDP--NNYVWNGQDVDREPYMAP 183

Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
                +          +   +           + TQKP  ++ R++ +S+  GD +LD F
Sbjct: 184 GLVTPEKVALGKLPTDVWWHTIVPPASKERTGYATQKPVGIIRRMIQASSNEGDWVLDFF 243

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
            GSGT+GA A++L R F+ +++  + I +  KR+       +  +T++   +++PR
Sbjct: 244 AGSGTTGAAARQLGRRFVLVDVNPEAIAVMAKRLDD--GALDTSVTIVQTPQSDPR 297


>gi|293402433|ref|ZP_06646569.1| DNA (cytosine-5-)-methyltransferase [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291304096|gb|EFE45349.1| DNA (cytosine-5-)-methyltransferase [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 318

 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 66/328 (20%), Positives = 111/328 (33%), Gaps = 91/328 (27%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            DKI  G+S+ VL+ LP   +D     PPY      + Y  D  +         + ++ E
Sbjct: 5   TDKIYCGDSLQVLQTLPDNCLDCCVTSPPY---YALRDYGTDGQI--------GREATPE 53

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI---------------------------- 111
            Y +   A     +RVL P GT W+  +                                
Sbjct: 54  EYVSRITAVFHEVKRVLTPEGTCWLNIADTYCGTGSKADHQDPKYPKGRNGQQVAVNHRA 113

Query: 112 ------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
                       + +   L+   +++ + I+W K NPMP     R    +E +   +   
Sbjct: 114 PGCKPKDLIGIPWLVALALRGDGWYLRSSIIWHKGNPMPESTRDRPTRCYEYVFLLTK-- 171

Query: 160 KAKGYTFNYDA-----------------------------------LKAANEDVQMRSDW 184
            +K Y +++ A                                   +           + 
Sbjct: 172 -SKKYYYDWQAVAEPIAPTTAVRLKSGVGKGNKYAATVPGQNQPQKINRPRRKGAYTDEM 230

Query: 185 LIPICS--GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           + P+ S     ++        H    P  L    +++    G I+LDPF GSGT+ A AK
Sbjct: 231 ISPVRSRRNVWQINTTSYRGGHFAAFPPKLAETCILAGCPVGGIVLDPFLGSGTTAAAAK 290

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQP 270
            L R +IGIE+  +Y  +A +RI   + 
Sbjct: 291 SLSRRYIGIEINPEYCTLAKQRIGGDEH 318


>gi|317054701|ref|YP_004119768.1| YfbB [Escherichia coli]
 gi|284433229|gb|ADB84968.1| YfbB [Escherichia coli]
          Length = 228

 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 61/249 (24%), Positives = 105/249 (42%), Gaps = 43/249 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R  +  +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G R + A+                          +    R    +P   G +      G
Sbjct: 108 VGYRHECAY-----------------------ILAKGSPARPRNPLPDVLGWKY----SG 140

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ + Y   
Sbjct: 141 NRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRA 200

Query: 261 ATKRIASVQ 269
             +R+A+VQ
Sbjct: 201 GQQRLAAVQ 209


>gi|304389705|ref|ZP_07371664.1| DNA methylase RsrI [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304326881|gb|EFL94120.1| DNA methylase RsrI [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 433

 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 60/263 (22%), Positives = 118/263 (44%), Gaps = 21/263 (7%)

Query: 21  DKIIKGNSISVLE-KLP--AKSVDLIFADPPYNLQLNG-----QLYRPDHSLVDAVTDSW 72
           ++I  G ++ V+   LP    SVD I+ DPP+N   +        +R D      V    
Sbjct: 48  NRIYVGENLQVMSGLLPQYEGSVDCIYIDPPFNSGTDYVQRIRTHHRGDSKRTITVKQYG 107

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIV 130
           D++ + + Y       L   RR L P GT+++   +H+   +  ++  +     ++N+IV
Sbjct: 108 DRWQTAD-YLQNLYERLTLLRRFLSPTGTIFLHCDWHSSAALRLVMDEVFGGSNLINEIV 166

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP--- 187
           W  ++       R F + H+T+++ + + +   +  +   +         R +   P   
Sbjct: 167 WAYASGGG--SRRAFGHKHDTILFYARNRRRYYFDPDAVRVAYNAAIAPKRRELFNPQGM 224

Query: 188 ----ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA-VAK 242
               +   S    + D    +PTQKP  ++ R + ++  PG +++D F GSG++    A 
Sbjct: 225 VAPDVWQISRPPNHSDTWVGYPTQKPLEVMQRAIAAACPPGGLVMDCFAGSGSTLVAAAA 284

Query: 243 KLRRSFIGIEMKQDYIDIATKRI 265
           +L R F+GIE     + +A +R+
Sbjct: 285 QLGRRFLGIERNSLGVHLARRRL 307


>gi|78356347|ref|YP_387796.1| adenine specific DNA methyltransferase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78218752|gb|ABB38101.1| adenine specific DNA methyltransferase, putative [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 247

 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 60/259 (23%), Positives = 99/259 (38%), Gaps = 39/259 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ------------LNGQLYRPDHSLVDAVT 69
            + +G ++S++  +P +SVD I  DPPY+              +  Q         +   
Sbjct: 8   TLHRGEALSLIRTMPDESVDAIVTDPPYSSGGLHTGQRQRPPGVKYQNSDARRRHAEFHG 67

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
           D+ D+ S    +  +   W+  C RV K   +  V   +  +  +   +Q   +     +
Sbjct: 68  DNRDQRS----FTLWASLWIAECYRVAKAGASCMVFTDWRQLPAMTDAMQIGGWTWRGIV 123

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
           VW K +  P     R Q  +                F             +   +   I 
Sbjct: 124 VWDKPSARPILGEFRRQCEY--------------VVFGVKGRLMPAHRRCLPGVYRHSII 169

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           +  +R         H T+KP  L+  +L   T PG  +LDPF GS T+GA   K  R+FI
Sbjct: 170 AHQKR--------RHMTEKPMPLIHDLLE-VTPPGCTVLDPFMGSATTGAACLKTNRNFI 220

Query: 250 GIEMKQDYIDIATKRIASV 268
           GIE+  +Y   A +R+  V
Sbjct: 221 GIELSPEYFQSACERLELV 239


>gi|190410582|ref|YP_001965996.1| probable DNA modification methyltransferase M.XmaI [Xanthomonas
           axonopodis pv. glycines]
 gi|2995642|gb|AAC08981.1| DNA modification methyltransferase M.XmaI [Xanthomonas campestris]
 gi|59938882|gb|AAX12207.1| probable DNA modification methyltransferase M.XmaI [Xanthomonas
           axonopodis pv. glycines]
          Length = 300

 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 66/282 (23%), Positives = 114/282 (40%), Gaps = 57/282 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + +G++++VL +LP+ SV  +   PPY    +  +       V           +   +
Sbjct: 27  TLFEGDALTVLRRLPSGSVRCVVTSPPYWGLRDYGIEEQIGLEV-----------TMPQF 75

Query: 82  DAFTRAWLLACRRVLKPNGTLW-VIGSYHN------------------------------ 110
                A     +RVL  +GTLW  IG  +                               
Sbjct: 76  LHRLVAIFAEVKRVLTDDGTLWLNIGDGYTSGNRGYRAPDKKNPARAMDVRPDTPVGLKP 135

Query: 111 ------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
                  +R+   LQ+  +++ +DIVW K N MP     R   +HE L   +    ++ Y
Sbjct: 136 KDLMGIPWRLAFALQDDGWYLRSDIVWNKPNAMPESVKDRPARSHEFLFMFTK---SEKY 192

Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
            +++ A +   +   +R+            +  K     H    P  L+   + +ST+PG
Sbjct: 193 FYDWQAAREPADGGGLRNRR------SVWNVNTKPFAGAHFATFPPELIRPCIHASTEPG 246

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           D +LDPFFGSGT G V +   R ++GIE+  +Y+ +A  R+ 
Sbjct: 247 DYVLDPFFGSGTVGLVCQDENRQYVGIELNPEYVTLAADRLQ 288


>gi|283785669|ref|YP_003365534.1| prophage DNA adenine methylase [Citrobacter rodentium ICC168]
 gi|282949123|emb|CBG88731.1| putative prophage DNA adenine methylase [Citrobacter rodentium
           ICC168]
          Length = 227

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 100/246 (40%), Gaps = 31/246 (12%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS-----LVDAVTDSWDKFSSFEA----YD 82
           +  +  +S+D +  DPPY+     +  R +       L       +D F+        + 
Sbjct: 1   MPLIEPESIDALITDPPYSSGATHKAGRTNQGSHAKYLNGENLHRFDGFAGENMDARSWA 60

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            +T+ W+    R ++P G   V   +  +  +    Q   F     I W K         
Sbjct: 61  YWTQLWMAQAHRAVRPGGYALVFTDWRQLPALTDAFQASGFTWRGIIAWNKGRGSRTPHT 120

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
             F++  E ++W S     K  +  +D                 P+            +K
Sbjct: 121 GYFRHQCEYIVWGSKGHLDKSPSGPFDGCMT------------FPVI---------PSKK 159

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +HPT KPE L++ ++ ++   G  +LDPF GSGT+G  A K  R FIGIE    Y D+AT
Sbjct: 160 MHPTGKPEELMAELVRTA-NSGGTVLDPFMGSGTTGVAALKAGRKFIGIETSDHYFDVAT 218

Query: 263 KRIASV 268
           +R+ +V
Sbjct: 219 QRLKTV 224


>gi|58383244|ref|YP_194814.1| putative methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|168758413|ref|ZP_02783420.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4401]
 gi|168770710|ref|ZP_02795717.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4486]
 gi|187736750|ref|YP_001816488.1| putative methylase [Escherichia coli 1520]
 gi|194433597|ref|ZP_03065874.1| DNA methylase family protein [Shigella dysenteriae 1012]
 gi|256367716|ref|YP_003108273.1| DNA methylase [Escherichia coli]
 gi|291289357|ref|YP_003517689.1| adenine-specific methyltransferase [Klebsiella pneumoniae]
 gi|302595375|ref|YP_003829237.1| DNA methylase [Escherichia coli]
 gi|302595494|ref|YP_003829112.1| DNA methylase [Escherichia coli]
 gi|309797313|ref|ZP_07691707.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 145-7]
 gi|37962723|gb|AAR05670.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|62550783|emb|CAH64706.1| hypothetical protein [uncultured bacterium]
 gi|172051332|emb|CAP07674.1| unnamed protein product [Escherichia coli]
 gi|189354777|gb|EDU73196.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4401]
 gi|189360471|gb|EDU78890.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4486]
 gi|194418189|gb|EDX34281.1| DNA methylase family protein [Shigella dysenteriae 1012]
 gi|228480653|gb|ACQ41980.1| DNA methylase [Escherichia coli]
 gi|290792318|gb|ADD63643.1| adenine-specific methyltransferase [Klebsiella pneumoniae]
 gi|302310135|gb|ADL14006.1| YhdJ [Escherichia coli]
 gi|302310263|gb|ADL14131.1| YhdJ [Escherichia coli]
 gi|308119060|gb|EFO56322.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 145-7]
 gi|327536645|gb|AEA95477.1| adenine-specific methyltransferase [Salmonella enterica subsp.
           enterica serovar Dublin]
          Length = 227

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 105/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMTRIPDNAIDFILTDPPYLVGFRD---RSGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|58000334|ref|YP_190175.1| putative methylase [Escherichia coli]
 gi|307313336|ref|ZP_07592959.1| DNA methylase N-4/N-6 domain protein [Escherichia coli W]
 gi|57903234|gb|AAW58864.1| DNA methylase [Escherichia coli]
 gi|306906758|gb|EFN37268.1| DNA methylase N-4/N-6 domain protein [Escherichia coli W]
 gi|315063813|gb|ADT78139.1| putative methylase [Escherichia coli W]
 gi|323380952|gb|ADX53219.1| DNA methylase N-4/N-6 domain protein [Escherichia coli KO11]
          Length = 227

 Score =  162 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 105/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +       R   ++    TD W + +  E +
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RSGRTIAGDKTDEWLQPACNEMF 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|321271502|gb|ADW79591.1| putative DNA methyltransferase [Escherichia coli]
 gi|332346561|gb|AEE59893.1| putative DNA methyltransferase [Escherichia coli UMNK88]
          Length = 227

 Score =  162 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 105/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +       R   ++    TD W + +  E +
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RSGRTIAGDKTDEWLQPACNEMF 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|207091956|ref|ZP_03239743.1| DNA methylase [Helicobacter pylori HPKX_438_AG0C1]
          Length = 257

 Score =  162 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 63/274 (22%), Positives = 105/274 (38%), Gaps = 40/274 (14%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
             + ++I   +S+  L+KLP   +D++   PPYN  +N    +  +              
Sbjct: 4   QNYLNQIYCKDSLEFLKKLPNNCIDIVLTSPPYNFGINYNATQDTN-------------- 49

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLW-----VIGSY-HNIFRIGTMLQNLNFWILNDIV 130
            ++ Y     A    C RVLK  G +      +   Y      I     +       +I+
Sbjct: 50  LWQEYFNTLFAIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISKFFIDEGLIWKGEIL 109

Query: 131 WRKSNPMPNFRGRRFQNAHETL-IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
           W K+N         +   + T   W SP+     Y++ +  +   N   +      I I 
Sbjct: 110 WEKNN---------YNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNNLKKEGDKDSIDIT 160

Query: 190 SGSERLRNKDGEKL----------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
               +                   H    PE L+ R L   +   DI+LDPF G+GT+  
Sbjct: 161 DDEFKKWVYGKWNFAPERNMKQYGHDAMFPEELVKRCLKLFSYQNDIVLDPFNGAGTTTK 220

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           VAK+L R FIGI++ + Y ++A +R+     L N
Sbjct: 221 VAKQLGRRFIGIDISEKYCEVAKERLKETTNLFN 254


>gi|301320551|gb|ADK69194.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 652

 Score =  162 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 62/274 (22%), Positives = 104/274 (37%), Gaps = 31/274 (11%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +++   + +  L++L   S+DL++ DPP+  Q    L    +       D W      + 
Sbjct: 5   NQVYNIDCLDGLKQLKDNSIDLVYLDPPFFTQKAHFLVDKTNKKY-FFNDIW---KDLKE 60

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  F +  L+  +RVLK  G+++V         I  +L  +   I             + 
Sbjct: 61  YQEFLKIRLIEIKRVLKSTGSVFVHCDKTANHIIRVLLDEIFGSINFRSEIIWVYKRWSN 120

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ--------------------- 179
             +   ++H+ +   S +   K      D     N D                       
Sbjct: 121 SKKGLLDSHQNIYHYSKTNDFKFNVIYTDYSLTTNIDQILQLRVKDKNNKIVYKKDKNNN 180

Query: 180 ------MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
                  +   L  + +             +PTQKP  LL RI+   T   D++LDPF G
Sbjct: 181 VVFSDLKKGVPLSDVWNIPFLNPKAKERTSYPTQKPIELLERIISLVTNENDVVLDPFVG 240

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           SGTS   +K L R+FIG ++  D IDI  +R+ +
Sbjct: 241 SGTSVVASKLLNRNFIGFDINIDAIDITNQRLKN 274


>gi|120603779|ref|YP_968179.1| DNA methylase N-4/N-6 domain-containing protein [Desulfovibrio
           vulgaris DP4]
 gi|120564008|gb|ABM29752.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio vulgaris DP4]
          Length = 262

 Score =  162 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 96/248 (38%), Gaps = 40/248 (16%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ------------LNGQLYRPDHSLVDAVT 69
            +I G S++VL  LP  SVD +  DPPY+                 Q      +    + 
Sbjct: 11  TLINGESLAVLRTLPDASVDTVLTDPPYSSGGVTMAARQADPAQKYQQSNTKRTYPTMLG 70

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
           D+ D+ S    +  +   WL  C RV K    + V   +  +  +   LQ   +     +
Sbjct: 71  DNRDQRS----FTLWATLWLSECWRVAKDGARIMVFSDWRQLPSMTDALQAAGWQWRGIV 126

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
            W K +  P   G   ++A   +  +   P     T                        
Sbjct: 127 TWHKPSARP-SLGDFKRDAEFVITGSKGKPLMHTRT----------------------CP 163

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
            G  R       K+H T+KP ALL  +L + T PG ++LDPF GSG++G    +  R ++
Sbjct: 164 PGVYRHSVNTARKIHLTEKPVALLEDLL-AVTAPGGLVLDPFAGSGSTGEACLRTGRRYL 222

Query: 250 GIEMKQDY 257
           GIE+  DY
Sbjct: 223 GIELSPDY 230


>gi|323974517|gb|EGB69644.1| DNA methylase [Escherichia coli TW10509]
          Length = 227

 Score =  162 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 106/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R  +  +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAAFQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|91206320|ref|YP_538674.1| hypothetical protein UTI89_P075 [Escherichia coli UTI89]
 gi|191174406|ref|ZP_03035910.1| DNA methylase family protein [Escherichia coli F11]
 gi|218692919|ref|YP_002406031.1| putative methylase [Escherichia coli UMN026]
 gi|237702490|ref|ZP_04532971.1| DNA modification methylase [Escherichia sp. 3_2_53FAA]
 gi|256855314|ref|YP_003162558.1| putative methylase [Escherichia coli]
 gi|293404634|ref|ZP_06648627.1| methylase [Escherichia coli FVEC1412]
 gi|300898234|ref|ZP_07116587.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 198-1]
 gi|91075771|gb|ABE10651.1| hypothetical protein UTI89_P075 [Escherichia coli UTI89]
 gi|190905339|gb|EDV64974.1| DNA methylase family protein [Escherichia coli F11]
 gi|218350082|emb|CAQ87499.1| putative Site-specific DNA-methyltransferase [Escherichia coli
           UMN026]
 gi|226903271|gb|EEH89530.1| DNA modification methylase [Escherichia sp. 3_2_53FAA]
 gi|256275526|gb|ACU68799.1| putative methyltransferase protein [Escherichia coli]
 gi|281181684|dbj|BAI58013.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|291428346|gb|EFF01372.1| methylase [Escherichia coli FVEC1412]
 gi|300358076|gb|EFJ73946.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 198-1]
 gi|307629844|gb|ADN74147.1| putative methylase [Escherichia coli UM146]
 gi|315291423|gb|EFU50783.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 153-1]
 gi|323954226|gb|EGB50014.1| DNA methylase [Escherichia coli H263]
 gi|324005838|gb|EGB75057.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 57-2]
          Length = 227

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 102/249 (40%), Gaps = 43/249 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +       R   ++   V D W + +S E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RSGRTIAGDVNDDWLQPASNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R     +   F +   +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKRAGFSVAGHLVFTKNYTSKSAY 107

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
              R + A+                          +    R    +P   G +      G
Sbjct: 108 VAYRHECAY-----------------------ILAKGSPARPRNPLPDVLGWKY----SG 140

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ + Y   
Sbjct: 141 NRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRA 200

Query: 261 ATKRIASVQ 269
             +R+A+VQ
Sbjct: 201 GQQRLAAVQ 209


>gi|48477657|ref|YP_023363.1| type II restriction modification system, methylation subunit
           [Picrophilus torridus DSM 9790]
 gi|48430305|gb|AAT43170.1| type II restriction modification system, methylation subunit
           [Picrophilus torridus DSM 9790]
          Length = 314

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 70/282 (24%), Positives = 115/282 (40%), Gaps = 42/282 (14%)

Query: 4   KNSLAINENQNSIFEWK-DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
           K +   N ++N I E   DKI   +S   ++++P  SV L+   PPYN+   G+LY    
Sbjct: 39  KETNTFNFSENKIPESTLDKIFLKSS-EKMDEIPDDSVHLMITSPPYNV---GKLY---- 90

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN-------IFRIG 115
                     DK  S   Y  F         RVL P G   +  +             I 
Sbjct: 91  ----------DKDMSLAEYREFLVNVWKEVYRVLVPGGRACINIANLGRKPYIPLHAYII 140

Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRF---------QNAHETLIWASPSPKAKGYTF 166
             +  L + +  +I+W K N   +               +++HE ++  S     +G   
Sbjct: 141 EDMIKLGYLMRGEIIWNKGNTASSSVAWGTYMSAKNPVLRDSHEYILVFSKKSFTRGVKE 200

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
              +     E +    ++   I S +     K G   HP   P  L  R++   +   ++
Sbjct: 201 GMKSTMTKEEFI----EYTKSIWSINAESATKIG---HPAPFPVELPKRLIKLYSFEDEV 253

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +LDPF GSGT+   A +L R +IG ++ Q+YI+IA  RI ++
Sbjct: 254 VLDPFIGSGTTAIAAIELNRHYIGYDIDQEYINIANSRIRAL 295


>gi|322836391|ref|YP_004215768.1| DNA methylase N-4/N-6 domain protein [Rahnella sp. Y9602]
 gi|321170944|gb|ADW76641.1| DNA methylase N-4/N-6 domain protein [Rahnella sp. Y9602]
          Length = 214

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 103/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I+G+   V+   P+ +VD I  DPPY +    +  R         T + DK       
Sbjct: 3   RFIQGDCEQVMSGFPSNAVDFILTDPPYLVGFTDRTGR---------TIANDKQGD---- 49

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
             +         RVLKPN       +++ +       +   F ++  +V+ K+      F
Sbjct: 50  --WLLPVSKEMFRVLKPNSLAVSFYAWNRVDLFMQAWKAAGFRVVGHVVFTKTYASKSAF 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R ++A+       L+   P P    + +                             
Sbjct: 108 VGYRHESAYILAKGRPLLPEKPLPDVMPWQYT---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP ++L  ++ S T+PG I+LDPF GSG++   A++  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVSVLRPLIESFTQPGSIVLDPFAGSGSTCVAAEQAGRRWIGIELME 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+  ++
Sbjct: 196 QYHATGLRRLTELR 209


>gi|255513890|gb|EET90155.1| DNA methylase N-4/N-6 domain protein [Candidatus Micrarchaeum
           acidiphilum ARMAN-2]
          Length = 314

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 84/320 (26%), Positives = 133/320 (41%), Gaps = 75/320 (23%)

Query: 7   LAINENQ----NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
           + I ENQ      I    DKII G++ISV+ +LPAKSVDL  ADPPY             
Sbjct: 1   MIITENQLGKITKIDSLFDKIINGDAISVMGRLPAKSVDLTIADPPYF------------ 48

Query: 63  SLVDAVTDSWD-KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
                V + WD K+ + E Y  +T  W+    R+ K N + W+ G    + +I  + +  
Sbjct: 49  ---KTVNEKWDFKWRTEEDYLVWTEKWIKELSRIAKTNSSFWLFGYVKLLSKILPIAEKY 105

Query: 122 NFWILNDIV----WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA--- 174
            F     IV     R  +       + F    E++ +   + +     F  +  K     
Sbjct: 106 GFVFRQQIVVDKGMRSISGRKTSTYKMFPTTTESIFFFVKNNQPNIKKFLKERQKELGFT 165

Query: 175 ----NEDVQMRSD----W----------LIPICSGSERLRN------------------- 197
               NE + ++++    W           IP     +RL+                    
Sbjct: 166 AKEINEKLHVKTNGGGVWSLYTGENILAQIPTREMWDRLQEILKFKMDYSEVNFTFNPQM 225

Query: 198 -----------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                         ++ H TQKP  L+ R++++S+  G+++LDPF GSGT+   + +L R
Sbjct: 226 GFSDVWTDIDFYKEDRNHSTQKPLKLIERLVIASSNKGNLVLDPFLGSGTTAVASMRLGR 285

Query: 247 SFIGIEMKQDYIDIATKRIA 266
            FIGIE+ + Y  IA +RI 
Sbjct: 286 KFIGIEIDKKYSKIAEQRIK 305


>gi|15669692|ref|NP_248505.1| type II R/M system modification methyltransferase
           [Methanocaldococcus jannaschii DSM 2661]
 gi|2500156|sp|Q58893|MTM5_METJA RecName: Full=Modification methylase MjaV; Short=M.MjaV; AltName:
           Full=N-4 cytosine-specific methyltransferase MjaV
 gi|1592134|gb|AAB99509.1| modification methylase, type II R/M system [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 292

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 57/283 (20%), Positives = 105/283 (37%), Gaps = 54/283 (19%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   + +  +++L  K+VD++   PPYN+ +    Y  + S               E 
Sbjct: 4   NKIYCMDCLEGMKQLKDKTVDVVVTSPPYNIGIKYNKYSDNLSR--------------ED 49

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYH-----------NIFRIGTMLQNLNFWILNDI 129
           Y  +    +   +RVLK +G+ ++   Y            N+ R    LQN   W+ +  
Sbjct: 50  YLNWIEEVVKEIKRVLKDDGSFFINVGYTAKDPWIAFDVANVIRKHFKLQNTIHWVKSIA 109

Query: 130 VWRKSNP--------------MPNFRGRRFQNAHETLIWASPSPKAKGYTF--------- 166
           + ++                  P    R     HE +   + +   K             
Sbjct: 110 IQKEDVGNYPNIIGDIAVGHYKPINSDRFLSIMHEYIFHFTKNGNVKLDKLAIGVPYQDK 169

Query: 167 -NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPG 224
            N        +     + W IP     E +++K+ E+ HP   P  L    + +   K  
Sbjct: 170 SNIKRFNRKGDLRDRGNTWFIPY----ETIQSKEKERPHPATFPPKLPEMCIKLHGVKKT 225

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           +++LDPF G G++     +L   +IG E+ + Y  +A +RI  
Sbjct: 226 NLVLDPFMGIGSTAIACIRLGIDYIGFEIDEYYCRVAEERIKK 268


>gi|317179830|dbj|BAJ57616.1| Type IIS restriction enzyme M1 protein [Helicobacter pylori F32]
          Length = 260

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 70/260 (26%), Positives = 107/260 (41%), Gaps = 38/260 (14%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   +  + L+KL  KSVDL   DPPYNL++                 SWD F + E 
Sbjct: 4   NKIYIEDVFTFLDKLEDKSVDLAIIDPPYNLKIA----------------SWDSFKNDEE 47

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           +  F+ AW+      LK  G+ ++  +  N       L +     LN I W K +   N 
Sbjct: 48  FLTFSYAWIDKMLPKLKDTGSFYIFNTPFNCALFLAYLHHKKVHFLNFITWVKKDGFANA 107

Query: 141 RGRRFQNAHETLIWAS----------------------PSPKAKGYTFNYDALKAANEDV 178
           + R        L ++                          ++KG   N        +  
Sbjct: 108 KKRYNPAQESILFYSMHKKNYTFNADEVRIAYESTERIKHAQSKGILKNNKRWFPNPKGK 167

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
                W I      E+ + K  +  HP+ KP+AL+ R++ +S+   D+ILD F GSG + 
Sbjct: 168 LCLDVWEIASQRHVEKEKGKILKPKHPSIKPKALIERMIKASSHKNDLILDLFSGSGMTS 227

Query: 239 AVAKKLRRSFIGIEMKQDYI 258
            VAK L R+FIG E   +Y+
Sbjct: 228 LVAKSLGRNFIGCESHAEYV 247


>gi|300819994|ref|ZP_07100174.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 107-1]
 gi|300527443|gb|EFK48505.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 107-1]
 gi|321271401|gb|ADW79491.1| putative DNA methyltransferase [Escherichia coli]
 gi|323133080|gb|ADX20508.1| putative methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323959159|gb|EGB54825.1| DNA methylase [Escherichia coli H489]
          Length = 227

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 105/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +       R   ++    TD W + +  E +
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RSGRTIAGDKTDEWLQPACNEMF 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ + T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIENFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|307151753|ref|YP_003887137.1| DNA methylase N-4/N-6 domain-containing protein [Cyanothece sp. PCC
           7822]
 gi|306981981|gb|ADN13862.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7822]
          Length = 312

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 113/290 (38%), Gaps = 52/290 (17%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           FE  + II G ++ +L++LP   +  +   PPY  Q +             V +      
Sbjct: 31  FEEANFIIHGEALDMLKRLPDGLIQTVVTSPPYYGQRDYD-----------VENQIGIEK 79

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLW-VIGSYHN-------IFRIGTMLQNLNFWILND 128
           + + Y           +RVL+ +GTLW  +G  +         +R+   L+   + + +D
Sbjct: 80  NTDEYINRLVEIFEEVKRVLREDGTLWINVGDKYIDGNLAGLPWRLALALRERGWILRSD 139

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK---------GYTFNYDALKAANEDVQ 179
           I+W K N MP+    R    HE +   + + +             TF+  +      +  
Sbjct: 140 IIWYKPNAMPSSVRNRPTTDHEYIFLFAKNSQYYYDADAIREPHITFSEKSKMRGGRNHL 199

Query: 180 ------------------MRSDW---LIPICSGSERLRNKDGEKL---HPTQKPEALLSR 215
                              R  W     P       +      K    H    PE L+  
Sbjct: 200 GKNGGTPEQGKNSGNSNLHRGRWDQAFHPKGRNKRTVWEVPLSKFRDAHFAVFPEKLIEP 259

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
            +++      I+LDPFFGSGT G VA K  R FIGIE+ ++Y +IA+KRI
Sbjct: 260 CILAGCPENGIVLDPFFGSGTVGLVAHKKGRKFIGIELNENYCEIASKRI 309


>gi|300814334|ref|ZP_07094606.1| DNA (cytosine-5-)-methyltransferase [Peptoniphilus sp. oral taxon
           836 str. F0141]
 gi|300511601|gb|EFK38829.1| DNA (cytosine-5-)-methyltransferase [Peptoniphilus sp. oral taxon
           836 str. F0141]
          Length = 305

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/305 (23%), Positives = 120/305 (39%), Gaps = 49/305 (16%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY--------------R 59
             I  +K+KII GN ++VL+KLP +S+     DPPYN +  G+ +              +
Sbjct: 1   MEIDNFKNKIITGNCLNVLKKLPDESIAGCITDPPYNYEFIGKDWNQYEIERRMEKVNSK 60

Query: 60  PDHSLVDAV-----------TDSW--DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
              +LV  +              W      +   Y  + + W     R+LKP   + V  
Sbjct: 61  TSSTLVKNIPYGSGLSGGVRNKRWYEKNRKNILEYREWVKTWAKELYRILKPGAYVMVFN 120

Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG---------------RRFQNAHET 151
           S      I    ++  F+  + IVWR+ + +P                    R  ++   
Sbjct: 121 STRTSAHIQVAFEDEGFYARDTIVWRRQSGIPKGLNAEKKLEKMGAKNPEIWRGWHSALR 180

Query: 152 LIWASPSPKAKGYTFNYDALKAAN-----EDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
             W + +   K    NY            +      +        + +  +K+    H T
Sbjct: 181 NEWEAITVIQKPLINNYINTLTLYDVGLLKTESEEINGFQSNIIENIKRDSKNNTNTHIT 240

Query: 207 QKPEALLSRILVSSTK--PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            KP  L+ +++  S      +I++DPF GSGT+   AKKL   +IGIE+  DY+ IA +R
Sbjct: 241 IKPLQLIEKLISMSIPIHKNNIVIDPFLGSGTTAVAAKKLGLEWIGIEINPDYVKIAEER 300

Query: 265 IASVQ 269
           I  ++
Sbjct: 301 IRIME 305


>gi|313143165|ref|ZP_07805358.1| type IIS restriction enzyme M1 protein [Helicobacter cinaedi CCUG
           18818]
 gi|313128196|gb|EFR45813.1| type IIS restriction enzyme M1 protein [Helicobacter cinaedi CCUG
           18818]
          Length = 261

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 66/264 (25%), Positives = 116/264 (43%), Gaps = 45/264 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   +  S LE L   S+DL   DPPYNL++                 SWD F S + 
Sbjct: 10  NKIYIQDCFSFLESLADSSIDLAIIDPPYNLKIA----------------SWDSFKSEKE 53

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           + AF+  W+      +K NG+ ++  + ++       LQ     +  + +        ++
Sbjct: 54  FLAFSYKWIDLLLPKMKKNGSFYIFNTPYHCALFLHYLQEK--AVFQNFITWYKKDGLSY 111

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ--------------------- 179
             +RF N  E++++ +    +K Y FN ++++   E                        
Sbjct: 112 TKKRFVNNQESILFYT--MDSKSYCFNPESIRVPYESTSRIEHAKKNGILKNGKRWYPNE 169

Query: 180 ----MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
                   W I      +++  K  +  HPT KP+ ++ R++ +S+K GD++LD F GSG
Sbjct: 170 NGKLCPDVWEIASQRHKQKVNGKTQKLHHPTIKPKEMIERMIKASSKKGDLVLDLFSGSG 229

Query: 236 TSGAVAKKLRRSFIGIEMKQDYID 259
            +  VA+ L R+FIG E   +Y+D
Sbjct: 230 MTSLVARDLERNFIGCEASIEYVD 253


>gi|320159413|ref|YP_004172637.1| putative N-4 cytosine-specific methyltransferase [Anaerolinea
           thermophila UNI-1]
 gi|319993266|dbj|BAJ62037.1| putative N-4 cytosine-specific methyltransferase [Anaerolinea
           thermophila UNI-1]
          Length = 291

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 119/298 (39%), Gaps = 52/298 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +++ G+    L+++P   +DLIF  PPY                D+ ++++      + Y
Sbjct: 6   RLMLGDCREKLKEIPDNFIDLIFTSPPY---------------ADSRSNTYGGIKP-DEY 49

Query: 82  DAFTRAWLLACRRVLKPNGTLW------VIGSYHNIFRIGTMLQ--NLNFWILNDIVWRK 133
             +         RVLKP GT        V+    + + I  +L+     +    + +W K
Sbjct: 50  VEWFLPISKELLRVLKPTGTFILNIKEKVVNGERHTYVIELILEMRKQGWLWTEEFIWHK 109

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS----------- 182
            N  P     RF++A E L+  +       Y         +  D ++++           
Sbjct: 110 KNSYPGKWPNRFRDAWERLLQFNKQRHFHMYQEEVMIPMGSWADKRLKNLSHTDLVRDNS 169

Query: 183 -----------DWLIP---ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
                      +W+       +    L  +   + H    PE L    +   T+ GD +L
Sbjct: 170 RVGSGFGKRVANWIGRNKVYPTNVLHLATETKNRNHSAVFPEDLPEWFIKLFTREGDWVL 229

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
           DPF GSGT+  VA+++ R+ IGIE+  +Y  ++ +   S+QP+  +   ++  +  EP
Sbjct: 230 DPFMGSGTTNRVAQRMGRNSIGIEILPEYFALSQQ---SIQPVLEVPEQLMLLEEKEP 284


>gi|154249220|ref|YP_001410045.1| DNA methylase N-4/N-6 domain-containing protein [Fervidobacterium
           nodosum Rt17-B1]
 gi|154153156|gb|ABS60388.1| DNA methylase N-4/N-6 domain protein [Fervidobacterium nodosum
           Rt17-B1]
          Length = 284

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 65/283 (22%), Positives = 109/283 (38%), Gaps = 36/283 (12%)

Query: 3   QKNSLAINENQNSIF----EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
             N L + +N+  IF    + K KII  + I+    +   S+DLI   PPYN+ ++   +
Sbjct: 7   NVNDLLLRQNEKKIFFETEDGKIKIIHDDFITT-NLIEENSIDLIITSPPYNVNIHYNSF 65

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW------------VIG 106
             D                +E Y  FT  WL     ++KP+G +               G
Sbjct: 66  SDD--------------IPYEKYTEFTEKWLKKAYSLVKPDGRMCLNIPLDKSKGREEAG 111

Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
                  I  + + + +   + I+W + N         + +A    + A        Y  
Sbjct: 112 FQSVYADIVNIAKKVGWKYFSTIIWNEGNISRRTAWGSWLSARAPYVIAPVETIVILYKE 171

Query: 167 NYDALKAANEDVQM--RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
            +  +K    D+      +W   + + S   + K G   HP   P  L  R +   +   
Sbjct: 172 KWRKIKEGESDITREEFMEWTNGLWTFSGESKKKVG---HPAPFPIELPKRCIKLFSYTN 228

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           D ILDPF GSG++      L R  IG+E+ ++Y  +AT R+  
Sbjct: 229 DTILDPFLGSGSTLIACALLNRKGIGVEIDENYCKLATNRLKK 271


>gi|327461138|gb|EGF07471.1| prophage LambdaSa04 protein [Streptococcus sanguinis SK1057]
          Length = 422

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 104/260 (40%), Gaps = 37/260 (14%)

Query: 20  KDKIIKGNSISVLEK----LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           K ++I G+S   LE     L  K  +L+  DPPYN+ +     +  +          D  
Sbjct: 172 KHRVICGDSTK-LETYQLLLGDKKANLVVTDPPYNVNVEETAGKIKN----------DDM 220

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
           S  + Y  F     +   + ++ + +++V  +           ++  F++    VW+K+ 
Sbjct: 221 SDADFY-QFLFNMFVNVEQSMEDDASIYVFHADTEGLNFRKAFKDAGFYLSGCCVWKKNA 279

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            +       +Q  HE +++         +            D +  + W       S   
Sbjct: 280 LV--LGRSPYQWQHEPVLYGWKQKGKHQWF----------SDRKQTTIWEYDRPKSS--- 324

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                 K HPT KP  L++  + +S+  G +ILDPF GSG++   A +  R   GIE+ +
Sbjct: 325 ------KEHPTMKPVQLMAYPIQNSSMRGTLILDPFLGSGSTLIAADQTGRVCYGIELDE 378

Query: 256 DYIDIATKRIASVQPLGNIE 275
            ++D+  KR        +++
Sbjct: 379 KFVDVIVKRYMEATEKSDVQ 398


>gi|325687751|gb|EGD29772.1| prophage LambdaSa04, DNA methylase [Streptococcus sanguinis SK72]
          Length = 422

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 104/260 (40%), Gaps = 37/260 (14%)

Query: 20  KDKIIKGNSISVLEK----LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           K ++I G+S   LE     L  K  +L+  DPPYN+ +     +  +          D  
Sbjct: 172 KHRVICGDSTK-LETYQLLLGDKKANLVVTDPPYNVNVEETAGKIKN----------DDM 220

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
           S  + Y  F     +   + ++ + +++V  +           ++  F++    VW+K+ 
Sbjct: 221 SDADFY-QFLFNMFVNVEQSMEDDASIYVFHADTEGLNFRKAFKDAGFYLSGCCVWKKNA 279

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            +       +Q  HE +++         +            D +  + W       S   
Sbjct: 280 LV--LGRSPYQWQHEPVLYGWKQKGKHQWF----------SDRKQTTIWEYDRPKSS--- 324

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                 K HPT KP  L++  + +S+  G +ILDPF GSG++   A +  R   GIE+ +
Sbjct: 325 ------KEHPTMKPVQLMAYPIQNSSMRGTLILDPFLGSGSTLIAADQTGRVCYGIELDE 378

Query: 256 DYIDIATKRIASVQPLGNIE 275
            ++D+  KR        +++
Sbjct: 379 KFVDVIVKRYMEATEKSDVQ 398


>gi|16082855|ref|NP_395409.1| putative methylase [Yersinia pestis CO92]
 gi|31795413|ref|NP_857866.1| putative methylase [Yersinia pestis KIM]
 gi|45478689|ref|NP_995545.1| putative methylase [Yersinia pestis biovar Microtus str. 91001]
 gi|52788188|ref|YP_094016.1| putative methylase [Yersinia pestis]
 gi|108793616|ref|YP_636775.1| putative methylase [Yersinia pestis Antiqua]
 gi|108793820|ref|YP_636667.1| putative methylase [Yersinia pestis Nepal516]
 gi|145597307|ref|YP_001154780.1| putative methylase [Yersinia pestis Pestoides F]
 gi|149192726|ref|YP_001293957.1| putative methylase [Yersinia pestis CA88-4125]
 gi|161484926|ref|NP_857710.2| putative methylase [Yersinia pestis KIM]
 gi|165928425|ref|ZP_02224257.1| DNA methylase [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165939441|ref|ZP_02227988.1| DNA methylase [Yersinia pestis biovar Orientalis str. IP275]
 gi|165940200|ref|ZP_02228731.1| DNA methylase [Yersinia pestis biovar Orientalis str. IP275]
 gi|165940237|ref|ZP_02228766.1| DNA methylase [Yersinia pestis biovar Orientalis str. IP275]
 gi|166012173|ref|ZP_02233071.1| DNA methylase [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166214386|ref|ZP_02240421.1| DNA methylase [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167402238|ref|ZP_02307709.1| DNA methylase [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167422985|ref|ZP_02314738.1| DNA methylase [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167467603|ref|ZP_02332307.1| putative DNA methylase [Yersinia pestis FV-1]
 gi|229897032|ref|ZP_04512191.1| putative DNA methylase [Yersinia pestis Pestoides A]
 gi|229897786|ref|ZP_04512941.1| putative DNA methylase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229900345|ref|ZP_04515479.1| putative DNA methylase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229904783|ref|ZP_04519893.1| putative DNA methylase [Yersinia pestis Nepal516]
 gi|270490952|ref|ZP_06208025.1| DNA (cytosine-5-)-methyltransferase [Yersinia pestis KIM D27]
 gi|294502064|ref|YP_003565801.1| putative DNA methylase [Yersinia pestis Z176003]
 gi|3883083|gb|AAC82743.1| unknown [Yersinia pestis KIM 10]
 gi|5834748|emb|CAB55246.1| putative DNA methylase [Yersinia pestis CO92]
 gi|45357342|gb|AAS58736.1| putative DNA methylase [Yersinia pestis biovar Microtus str. 91001]
 gi|52538117|emb|CAG27543.1| putative hemagglutinin-associated protein [Yersinia pestis]
 gi|108777884|gb|ABG20402.1| DNA methylase [Yersinia pestis Nepal516]
 gi|108782163|gb|ABG16220.1| DNA methylase [Yersinia pestis Antiqua]
 gi|145213075|gb|ABP42480.1| DNA methylase [Yersinia pestis Pestoides F]
 gi|148872384|gb|ABR14873.1| putative DNA methylase [Yersinia pestis CA88-4125]
 gi|165911828|gb|EDR30476.1| DNA methylase [Yersinia pestis biovar Orientalis str. IP275]
 gi|165911881|gb|EDR30527.1| DNA methylase [Yersinia pestis biovar Orientalis str. IP275]
 gi|165912629|gb|EDR31259.1| DNA methylase [Yersinia pestis biovar Orientalis str. IP275]
 gi|165919566|gb|EDR36899.1| DNA methylase [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165988907|gb|EDR41208.1| DNA methylase [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166204444|gb|EDR48924.1| DNA methylase [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166957108|gb|EDR55129.1| DNA methylase [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167048340|gb|EDR59748.1| DNA methylase [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|229678098|gb|EEO74204.1| putative DNA methylase [Yersinia pestis Nepal516]
 gi|229686598|gb|EEO78680.1| putative DNA methylase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229693367|gb|EEO83417.1| putative DNA methylase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229700068|gb|EEO88108.1| putative DNA methylase [Yersinia pestis Pestoides A]
 gi|262363958|gb|ACY60677.1| putative DNA methylase [Yersinia pestis D106004]
 gi|262364118|gb|ACY64454.1| putative DNA methylase [Yersinia pestis D182038]
 gi|270334933|gb|EFA45711.1| DNA (cytosine-5-)-methyltransferase [Yersinia pestis KIM D27]
 gi|294352535|gb|ADE66591.1| putative DNA methylase [Yersinia pestis Z176003]
 gi|317374553|gb|ADV16728.1| adenine-specific methyltransferase [Yersinia pestis]
 gi|320017613|gb|ADW01183.1| putative DNA methylase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 225

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 61/249 (24%), Positives = 105/249 (42%), Gaps = 43/249 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I+GN + ++   P  +VD I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFIQGNCVHIMSGFPDNAVDFILTDPPYLVGFRD---RQGRTIAGDKTDEWLQPACHEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYTSKAAY 107

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G R + A+       P P+              N+ +  +                  G
Sbjct: 108 VGYRHECAYILAKGRPPLPQ-----------NPLNDVIAWKY----------------SG 140

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            + HPT+KP   L  ++ S T PG I+LDPF GSG++   A +  R +IGIE+ + Y   
Sbjct: 141 NRHHPTEKPVTSLQPLIESFTHPGAIVLDPFAGSGSTCVAALQAGRRYIGIELLEQYHRA 200

Query: 261 ATKRIASVQ 269
             +R+A+V+
Sbjct: 201 GQQRLAAVR 209


>gi|307151149|ref|YP_003886533.1| DNA methylase N-4/N-6 domain-containing protein [Cyanothece sp. PCC
           7822]
 gi|306981377|gb|ADN13258.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7822]
          Length = 588

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 74/319 (23%), Positives = 121/319 (37%), Gaps = 60/319 (18%)

Query: 6   SLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV 65
            L + ENQ +  E+ +KI+ G+ +  L+KLP  S+D  F DPPYNL+     Y  D    
Sbjct: 222 ELFLPENQLT-EEYTNKILTGDCLDYLKKLPDNSIDFAFVDPPYNLKKQYSGYSDD---- 276

Query: 66  DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
                        E Y  +   W+    RVLKP               +   L+ +  +I
Sbjct: 277 ----------LEIEQYFQWCDQWIREIARVLKPG---------RTCAILNIPLRAIRHFI 317

Query: 126 LNDIVWRKSNPMPN----FRGRRFQNAHETLIWASP------------------------ 157
            +  + +  N +      F  R    AH T++  S                         
Sbjct: 318 FSKTLLQFQNWIVWDALAFPVRLIMPAHYTILCFSKGKPRELPGLMGESGITTTTSAPET 377

Query: 158 ----SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL 213
               +P A  +      +K            L  + S   RL++      HP Q P  L+
Sbjct: 378 FNALNPLADDFCLRSSCIKKRKNLNINDRTLLTDLWSDIHRLKHNSRRVDHPCQLPPHLM 437

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR----IASVQ 269
            R++   T+ G+++LD F G+GT+   A ++ R +IGIE+  +Y  IA  R    +  + 
Sbjct: 438 YRLISLFTEMGEVVLDCFNGAGTTTLAAHQIGRKYIGIEISPEYSKIAIDRHDEIVKGLD 497

Query: 270 PLGNIELTVLTGKRTEPRV 288
           P    +  +       PR+
Sbjct: 498 PFRKEDRILRAKNSPVPRL 516


>gi|257088375|ref|ZP_05582736.1| DNA-methyltransferase [Enterococcus faecalis D6]
 gi|256996405|gb|EEU83707.1| DNA-methyltransferase [Enterococcus faecalis D6]
 gi|315026485|gb|EFT38417.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX2137]
          Length = 246

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 79/264 (29%), Positives = 120/264 (45%), Gaps = 41/264 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +II  +    L ++  +SVDLIF DPPYNL           S  D ++DSW    S + Y
Sbjct: 3   RIINKDVFKGLNEVKEESVDLIFIDPPYNL---------KKSYADGISDSW---ISDKEY 50

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +   WL      LKPNG+L+++ +  N+  I   L++   +I + IVW   +      
Sbjct: 51  MDWVEKWLEITISKLKPNGSLYIMNTTQNMPFIDIYLRD-KLYIQSRIVWHYDSSGVQ-A 108

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFN--------------------YDALKAANEDVQMR 181
            R + + +E +++ +      GYTFN                     +  +  NE     
Sbjct: 109 KRYYGSLYEPILFCTKKRS--GYTFNGSAIEVKTRTGSERKLIDYRKNPPQQYNETKVPG 166

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
           + W  P      +   K     HP+QKP +LL RI+++S+  GD ILD F GS   G V 
Sbjct: 167 NVWYFPRVRFKMKEYVK-----HPSQKPISLLKRIVLASSNEGDTILDVFAGSFALGEVC 221

Query: 242 KKLRRSFIGIEMKQDYIDIATKRI 265
           K   R +IGIEM + Y +I   R+
Sbjct: 222 KNYSRDYIGIEMSKTYCEIGKNRL 245


>gi|224436664|ref|ZP_03657673.1| type IIS restriction enzyme M1 protein (mod) [Helicobacter cinaedi
           CCUG 18818]
          Length = 254

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 66/264 (25%), Positives = 116/264 (43%), Gaps = 45/264 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   +  S LE L   S+DL   DPPYNL++                 SWD F S + 
Sbjct: 3   NKIYIQDCFSFLESLADSSIDLAIIDPPYNLKIA----------------SWDSFKSEKE 46

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           + AF+  W+      +K NG+ ++  + ++       LQ     +  + +        ++
Sbjct: 47  FLAFSYKWIDLLLPKMKKNGSFYIFNTPYHCALFLHYLQEK--AVFQNFITWYKKDGLSY 104

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ--------------------- 179
             +RF N  E++++ +    +K Y FN ++++   E                        
Sbjct: 105 TKKRFVNNQESILFYT--MDSKSYCFNPESIRVPYESTSRIEHAKKNGILKNGKRWYPNE 162

Query: 180 ----MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
                   W I      +++  K  +  HPT KP+ ++ R++ +S+K GD++LD F GSG
Sbjct: 163 NGKLCPDVWEIASQRHKQKVNGKTQKLHHPTIKPKEMIERMIKASSKKGDLVLDLFSGSG 222

Query: 236 TSGAVAKKLRRSFIGIEMKQDYID 259
            +  VA+ L R+FIG E   +Y+D
Sbjct: 223 MTSLVARDLERNFIGCEASIEYVD 246


>gi|119385886|ref|YP_916941.1| DNA methylase N-4/N-6 domain-containing protein [Paracoccus
           denitrificans PD1222]
 gi|119376481|gb|ABL71245.1| DNA methylase N-4/N-6 domain protein [Paracoccus denitrificans
           PD1222]
          Length = 225

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 62/250 (24%), Positives = 100/250 (40%), Gaps = 41/250 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           ++ +I  + I  ++   + SVD I  DPPY               V    D   +  + +
Sbjct: 9   RNLVINADCIEAMQAFGSGSVDFILTDPPY---------------VTRFRDRQGRTVAND 53

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
               + R       RVLK  G       ++ +       +   F I+  +V+RK      
Sbjct: 54  DNARWLRPAFAQMHRVLKDGGFCVSFYGWNKVDLFVEAWKAAGFRIVGHLVFRKRYASS- 112

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
              R  +  HE     +                  +    +      P            
Sbjct: 113 --ARFLRYEHEQAYLLAKG-------------DPESPARPVPDVLDFPYT---------- 147

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G KLHPTQKP A L R++ + TKPGD++LDPF GSG++ A A  L R ++G+E+  ++  
Sbjct: 148 GNKLHPTQKPVAALRRLIGAFTKPGDLVLDPFSGSGSTLAAAHLLGRDWLGVELDVEHYQ 207

Query: 260 IATKRIASVQ 269
            A KR+A++Q
Sbjct: 208 TAGKRMAALQ 217


>gi|225849772|ref|YP_002730006.1| DNA methylase [Persephonella marina EX-H1]
 gi|225644906|gb|ACO03092.1| DNA methylase [Persephonella marina EX-H1]
          Length = 294

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 72/289 (24%), Positives = 119/289 (41%), Gaps = 30/289 (10%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + E+ DK+I G+++  L+K+P  S+DL    PPYN + + + +  D       TD+    
Sbjct: 2   VSEFIDKVICGDTLETLKKIPDNSIDLGITSPPYNKREDKKGWLVDKITYKGATDN---- 57

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN----IFRIGTMLQNLNFWILNDIVW 131
              E Y       L    R++KP G+ +           +F     L+   + I  +I+W
Sbjct: 58  LPEEVYQETQIKVLNELYRIIKPGGSFFYNHKIRWEKGIMFHPMDWLRKTKWIIRQEIIW 117

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
            +     N RG RF    E + W            N    +  +    + S W +   + 
Sbjct: 118 DRMIAA-NLRGWRFWQVEERIYWLYKPIGN-----NKIGKELKSRHALLTSIWRLLPENN 171

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPG--DIILDPFFGSGTSGAVAKKLRRSFI 249
           +           HP   P AL  RI+ S        +++DP+ GSGT+   AK L   ++
Sbjct: 172 NP----------HPAPFPIALPVRIIYSIFDEERGKLVIDPYCGSGTTLVAAKILGHHYL 221

Query: 250 GIEMKQDYIDIATKRIASVQ---PLGNIELTVLTGKRTE-PRVAFNLLV 294
           GI++ Q+Y D A KR+ + Q   P    E++    K+T   R      V
Sbjct: 222 GIDISQEYTDYALKRLENYQFEIPKAQEEISKHVVKKTFKERKEKGEFV 270


>gi|321271701|gb|ADW79788.1| putative DNA methyltransferase [Escherichia coli]
          Length = 227

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 99/254 (38%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +    +  R                 + +  
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRDRSGRT---------------IAGDKT 47

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
           D +         RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 48  DEWLLPACNEMFRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPRLPQKPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G   HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNHHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|307317588|ref|ZP_07597027.1| DNA methylase N-4/N-6 domain protein [Sinorhizobium meliloti AK83]
 gi|306896746|gb|EFN27493.1| DNA methylase N-4/N-6 domain protein [Sinorhizobium meliloti AK83]
          Length = 286

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/281 (25%), Positives = 115/281 (40%), Gaps = 61/281 (21%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I +G++++VL++LP +    I   PPY    +  +            D      +   + 
Sbjct: 19  IFEGDALTVLQRLPDQHAQCIVTSPPYWGLRDYNI-----------DDQIGLEPTLPQFI 67

Query: 83  AFTRAWLLACRRVLKPNGTLW-VIGS--------YH------------------------ 109
               +     RRVL+ +G LW  IG         +                         
Sbjct: 68  NSLVSVFREARRVLRDDGVLWLNIGDGFTSGNRGWRAPDKKNPARAMTVRPNTPEGLKRK 127

Query: 110 ----NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
                 +R+   LQ+  +++  DI+W K N MP     R   +HE L   S   +   Y 
Sbjct: 128 DLLGIPWRLAFALQDDGWYLRADIIWNKPNAMPESVRDRPTRSHEYLFMFSKQEQ---YV 184

Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
           ++ + +K AN     RS W I                 H    P+ L+   L ++T+PGD
Sbjct: 185 YDRETVKEANG-RNRRSVWDINTSPFP---------GAHFATFPKKLVEPCLKATTRPGD 234

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
            +LDPFFGSGT G VA++LRR +IGIE+   Y+ +A  R+ 
Sbjct: 235 FVLDPFFGSGTVGLVAQQLRRKYIGIELNPAYVALAADRLK 275


>gi|300871833|ref|YP_003786706.1| DNA methylase N-4/N-6 domain-containing protein [Brachyspira
           pilosicoli 95/1000]
 gi|300689534|gb|ADK32205.1| DNA methylase N-4/N-6 domain protein [Brachyspira pilosicoli
           95/1000]
          Length = 321

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 84/303 (27%), Positives = 131/303 (43%), Gaps = 51/303 (16%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           +  +K I GN+  VL+K+     DL+  DPPYN+  N   Y+              K   
Sbjct: 43  DIINKTINGNTFDVLKKIEKNITDLMIVDPPYNISKNYHGYKF-------------KDRD 89

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
             +YD +T  W+ +   +LK N T++V   + +   IG +L+   F I N I W++    
Sbjct: 90  NLSYDKYTHLWVESIIPILKENATIYVCCDWKSSLVIGNVLEK-YFKIQNRITWQREKGR 148

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFN------YDALKAANEDVQMRSDWLIPICSG 191
                  ++N  E + +A+    +  YTFN         + A  +      DW I   +G
Sbjct: 149 G--AKNNWKNGMEDIWFAT---LSNKYTFNIDKVKIRRKVIAPYKIEGKPKDW-IETENG 202

Query: 192 SER--------------LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           + R                +      HPTQKPE L+++++++S+   D + DPF GSGT+
Sbjct: 203 NFRDTCPSNFWDDISIPYWSMPENTAHPTQKPEKLIAKLILASSNENDFVFDPFLGSGTT 262

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERG 297
             VAKKL R++ GIE    Y   A KRI S      I+               N+  ER 
Sbjct: 263 SVVAKKLGRNYSGIEQNPAYCAWAEKRIESALQNKEIQGYTD-----------NIFWERN 311

Query: 298 LIQ 300
            +Q
Sbjct: 312 TMQ 314


>gi|260587163|ref|ZP_05853076.1| DNA (cytosine-5-)-methyltransferase [Blautia hansenii DSM 20583]
 gi|283798265|ref|ZP_06347418.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. M62/1]
 gi|260542358|gb|EEX22927.1| DNA (cytosine-5-)-methyltransferase [Blautia hansenii DSM 20583]
 gi|291074045|gb|EFE11409.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. M62/1]
          Length = 296

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 75/303 (24%), Positives = 113/303 (37%), Gaps = 64/303 (21%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I++G+++  L KLP K   +    PPY    N + Y           D     SS E Y 
Sbjct: 2   ILQGDALEELRKLPDKCCSVCVTSPPY---YNARDY--------GAADQLGTESSPEEYT 50

Query: 83  AFTRAWLLACRRVLKPNGTLW-VIGSYH----------------NIFRIGTMLQNLNFWI 125
                      RVLK +GTLW  IG  +                  + +   L++  +++
Sbjct: 51  RKLVEAFREVARVLKDDGTLWLNIGDSYARHIEDGGIKRKDLIGIPWLLALALRSDGWYL 110

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLI---------------------WASPSPKAKG- 163
             DI+W K N MP     R   +HE +                      +    P  K  
Sbjct: 111 RADIIWNKPNAMPESAKDRPARSHEYVFLLSKAAAYYYDAEAVKELAVGYDPKKPGRKRG 170

Query: 164 ----------YTFNYDALKAANEDVQMRSDWLIPICSGSER----LRNKDGEKLHPTQKP 209
                     YT +     +A  D              + R    +  +  +  H +  P
Sbjct: 171 NAKTFRGGTAYTHDQAKANSAEVDRGSHGLQRNETGKRNRRDVWTIATRPYKGAHLSTFP 230

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           E L    +++ +KPGD +LDPF GSGT+GA A K  R++IGIE+  D   I  +R+A   
Sbjct: 231 EELAKICILAGSKPGDTVLDPFSGSGTTGAAALKEGRNYIGIEINPDTCKIQEQRLAEAA 290

Query: 270 PLG 272
             G
Sbjct: 291 QEG 293


>gi|225388254|ref|ZP_03757978.1| hypothetical protein CLOSTASPAR_01989 [Clostridium asparagiforme
           DSM 15981]
 gi|225045722|gb|EEG55968.1| hypothetical protein CLOSTASPAR_01989 [Clostridium asparagiforme
           DSM 15981]
          Length = 318

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/328 (19%), Positives = 110/328 (33%), Gaps = 91/328 (27%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            DKI  G+S+ VL+ LP   +D     PPY      + Y  D  +         + ++ E
Sbjct: 5   TDKIYCGDSLQVLQTLPDNCMDCCVTSPPY---YALRDYGTDGQI--------GREATPE 53

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI---------------------------- 111
            Y +   A     +RVL P GT W+  +                                
Sbjct: 54  EYVSRITAVFHEVKRVLTPEGTCWLNIADTYCGTGSKADHQDPKYPKGRNGQQVAVNHRA 113

Query: 112 ------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
                       + +   L+   +++ + I+W K N MP     R    +E +   +   
Sbjct: 114 PGCKPKDLIGIPWLVALALRGDGWYLRSSIIWHKGNAMPESTRDRPTRCYEYVFLLTK-- 171

Query: 160 KAKGYTFNYDA-----------------------------------LKAANEDVQMRSDW 184
            +K Y +++ A                                   +           + 
Sbjct: 172 -SKKYYYDWQAVAEPIAPTTAVRLKSGVGKGNKYAATVPGQNQPQKINRPRRKGAYTDEM 230

Query: 185 LIPICS--GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           + P+ S     ++        H    P  L    +++    G I+LDPF GSGT+ A AK
Sbjct: 231 ISPVRSRRNVWQINTASYRGGHFAAFPPKLAETCILAGCPVGGIVLDPFLGSGTTAAAAK 290

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQP 270
            L R ++GIE+  +Y  +A +RI   + 
Sbjct: 291 SLSRRYVGIEINPEYCTLAKQRIGGDEH 318


>gi|302651686|ref|YP_003829067.1| hemaglutinin-associated protein [Escherichia coli]
 gi|302310089|gb|ADL13961.1| Hap [Escherichia coli]
          Length = 227

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 61/249 (24%), Positives = 101/249 (40%), Gaps = 43/249 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RSGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     +H I R     +   F +   +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWHRIDRFMAAWKRAGFSVAGHLVFTKNYTSKSAY 107

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
              R + A+                          +    R    +P   G +      G
Sbjct: 108 VAYRHECAY-----------------------ILAKGSPARPRNPLPDVLGWKY----SG 140

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ + Y   
Sbjct: 141 NRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRA 200

Query: 261 ATKRIASVQ 269
             +R+A+VQ
Sbjct: 201 GQQRLAAVQ 209


>gi|198276345|ref|ZP_03208876.1| hypothetical protein BACPLE_02540 [Bacteroides plebeius DSM 17135]
 gi|198270787|gb|EDY95057.1| hypothetical protein BACPLE_02540 [Bacteroides plebeius DSM 17135]
          Length = 270

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 65/265 (24%), Positives = 103/265 (38%), Gaps = 38/265 (14%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+I   + +  ++++   SVD I AD PY +     L R + S+      +WD+   F A
Sbjct: 5   DRIYLMDCMEGMKQIADGSVDAIIADLPYGV-----LNRSNPSV------NWDRQIPFAA 53

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                       +R+ KP+  + + G    +F    ML     W  N +  +        
Sbjct: 54  LWE-------QYQRITKPDSPIILFG--QGLFSAWLMLSQPRLWRYNLVWQKDRVTGHLN 104

Query: 141 RGRRFQNAHETLI-----------WASPSPKAKGYTFNYDALKAANEDVQMRS------- 182
             R     HE ++             +P P  + Y          N              
Sbjct: 105 AKRMPLRQHEDILVFYKKQPVYHPQMTPCPPERRYHGRRKTEGFTNRCYGTMKLSPVRIA 164

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           D   P         +K G   HPTQKP AL+  ++ + T  GD++LD   GSGT+   A 
Sbjct: 165 DDKYPTSVIFMPKEHKKGAFYHPTQKPVALMEYLIRTYTDEGDVVLDNCIGSGTTAVAAI 224

Query: 243 KLRRSFIGIEMKQDYIDIATKRIAS 267
           +  R +IG E++Q Y +IA +RI  
Sbjct: 225 RTGRHYIGFEIEQAYCEIAERRIQE 249


>gi|167841358|ref|ZP_02468042.1| DNA methylase N-4/N-6 domain protein [Burkholderia thailandensis
           MSMB43]
          Length = 213

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 90/245 (36%), Gaps = 41/245 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+ +  + +L  +SVD I  DPPY +       R   S+ + V D W          
Sbjct: 4   LYNGDCLVAMPQLAPESVDCIVTDPPYLVNFRD---RSGRSIANDVNDGW---------- 50

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
                      RVLK +        ++ +       +   F +    V+ KS        
Sbjct: 51  --LAPAFAEMFRVLKRDAVCISFYGWNKVDLFFDAWKAAGFRVAGHFVFTKSYASKAGLV 108

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +     HE+    +    A       D +                            G +
Sbjct: 109 KY---QHESAYLLAKGRPAAPAEPIADVMPFPY-----------------------SGNR 142

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPT+KP   L  ++ + T+PG+ +LDPF GSG++   A++L R +IGIE+   Y   A 
Sbjct: 143 HHPTEKPVPALRTLIAAFTQPGETVLDPFAGSGSTCVAARELGRRYIGIELDATYFAAAK 202

Query: 263 KRIAS 267
            R+ +
Sbjct: 203 ARLTA 207


>gi|163782845|ref|ZP_02177841.1| DNA modification methylase-like protein [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159881966|gb|EDP75474.1| DNA modification methylase-like protein [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 281

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/310 (22%), Positives = 127/310 (40%), Gaps = 41/310 (13%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           I ++ + +I G+ + VL+++P++S+DL    PPYN +   + +  D  + ++  D+  + 
Sbjct: 4   IAKFLNGVICGDVLEVLKQIPSESIDLGITSPPYNKKGKNKGWLVDRVVYESYGDNMKE- 62

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF-----WILNDIV 130
              E Y  +    L    RV+K  G+     ++   +  G M+    +     W +   +
Sbjct: 63  ---EEYQEWQVEVLNKLYRVIKEGGSF--FYNHKIRWERGKMIHPYEWVSKTKWAVRQEI 117

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
                   N RG RF    E + W            N    +   E  +  S W I    
Sbjct: 118 VWNRKLAGNIRGWRFWQVDERIYWLYKPKNG-----NLIGEELKPEHAKFSSVWEI---- 168

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVS-STKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
                R + G K HP   P  L +RI++S       I+LDPF G GT+   AK L   ++
Sbjct: 169 -----RPESGFKEHPAPFPIELPTRIILSILDDKKGIVLDPFCGIGTTLVSAKLLGHDYV 223

Query: 250 GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQ 309
           GI++ +DY+D + +R+   +     E+  +  ++ E  V      ER            +
Sbjct: 224 GIDISKDYVDFSQRRLERAE----EEMEKVLKEKEEHIVNM-TFEER----------KRR 268

Query: 310 GNISATVCAD 319
           G+    V  +
Sbjct: 269 GHWKNKVKQN 278


>gi|73853262|ref|YP_308758.1| putative methylase [Escherichia coli]
 gi|73476846|gb|AAZ76461.1| DNA methylase [Escherichia coli]
          Length = 228

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 61/249 (24%), Positives = 102/249 (40%), Gaps = 43/249 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +    +  R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRDRFGR---TIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     +H I R     +   F +   +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWHRIDRFMAAWKRAGFSVAGHLVFTKNYTSKSAY 107

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
              R + A+                          +    R    +P   G +      G
Sbjct: 108 VAYRHECAY-----------------------ILAKGSPARPRNPLPDVLGWKY----SG 140

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ + Y   
Sbjct: 141 NRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRA 200

Query: 261 ATKRIASVQ 269
             +R+A+VQ
Sbjct: 201 GQQRLAAVQ 209


>gi|50954042|ref|YP_061330.1| DNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50950524|gb|AAT88225.1| DNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 285

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 68/272 (25%), Positives = 114/272 (41%), Gaps = 28/272 (10%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL-------------NGQLYRPDHSLVDA 67
           D ++  +++SV+  LP  +  LI+ DPP+N                 G +        + 
Sbjct: 10  DTVVCADNVSVVTALPDGAFRLIYLDPPFNTGRPQARQQTTSVRSEGGSVIGFKGRSYER 69

Query: 68  VTDSWDKFSS-FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFW 124
           +      F   F+ Y  F    L+   R+L  +GTL++   Y        +L  L     
Sbjct: 70  IKGDLLSFDDRFDDYWQFLEPRLIEAWRLLADDGTLYLHLDYREAHYAKVLLDALFGREC 129

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN--------YDALKAANE 176
            LN+IVW            R+   H+T++    +P  +GY F+        Y A      
Sbjct: 130 FLNEIVWAYDYGAK--AKNRWPAKHDTILVYVKNP--RGYFFDSAAVDREPYMAPGLVTP 185

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
           +          +   +        +  +PTQKPE +L RI+ +S++ GD +LD F GSGT
Sbjct: 186 EKAELGKLPTDVWWHTIVSPTGREKTGYPTQKPEGILRRIVQASSREGDWVLDFFAGSGT 245

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +GAVA  L R F+ ++   D + +  +R A+ 
Sbjct: 246 TGAVAAGLGRRFLLVDSSPDALAVMRERFAAA 277


>gi|194337217|ref|YP_002019011.1| DNA methylase N-4/N-6 domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309694|gb|ACF44394.1| DNA methylase N-4/N-6 domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 292

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 112/289 (38%), Gaps = 55/289 (19%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            E K  +  G+   +L+ LP  SVDLIF  PPY                D    ++  F 
Sbjct: 1   METKTDLYLGDCTQLLKTLPDDSVDLIFTSPPY---------------ADQRKQTYGGF- 44

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLW------VIGSYHNIFRIGTMLQ--NLNFWILND 128
             + Y  +     L   RVLKP GT        V+    + + +  +L+     ++   +
Sbjct: 45  HPDDYVEWFLPISLQLLRVLKPTGTFVLNIKEKVVNGERSTYVMELILEMRKQGWFWTEE 104

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ--------- 179
            +W K N  P     RF+++ E LI  +    +K +  +  A+     D           
Sbjct: 105 FIWHKKNCYPGKWPNRFRDSWERLIQFNK---SKHFYMDQKAVMVPMGDWSKTRLKNLSE 161

Query: 180 -------------------MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
                                 D  +   +    L  +   K H    PE L    +   
Sbjct: 162 TDKTRDESKVGSGFGKNISNWLDREMAYPTNVLHLATECNNKKHSAAFPEGLPEWFIKLF 221

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           TK GD +LDPF GSGT+ AVA+++RR+ IGIE+  +Y D+    +  V+
Sbjct: 222 TKEGDTVLDPFMGSGTTNAVAQRMRRNSIGIEIVPEYYDMVKTELKPVE 270


>gi|317481265|ref|ZP_07940336.1| DNA methylase [Bacteroides sp. 4_1_36]
 gi|316902598|gb|EFV24481.1| DNA methylase [Bacteroides sp. 4_1_36]
          Length = 308

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 67/317 (21%), Positives = 113/317 (35%), Gaps = 84/317 (26%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
            ++I     +  L+ +P+ S+      PPY NL+  G              D      + 
Sbjct: 1   MNQIYNSECLLGLKSIPSNSIHCCVTSPPYYNLRDYGH------------EDQIGLEKTP 48

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLW-VIGSYHN--------------------------- 110
           E Y           +RV+K +GTLW  IG  +N                           
Sbjct: 49  EEYIQKLVDVFREVKRVMKDDGTLWINIGDSYNGSGKAGNNPNYWSKHTAFGKLANKSTF 108

Query: 111 -----------------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
                             + +   L+   +++  DI+W K + MP     R   +HE + 
Sbjct: 109 GYPVKVTSCKPKDLIGIPWMLAFALRADGWYLRQDIIWSKPSVMPESVKDRCTKSHEYIF 168

Query: 154 WASPSPKAKGYTFN-----------------------YDALKAANEDVQMRSDWLIPICS 190
             S +   K Y F+                        +A + +     + +D+L     
Sbjct: 169 LLSKN---KTYYFDSNAIAEPATSFDTIIRDRDITKLNNAPRRSKMKGLIHNDYLTRNKR 225

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
               +  +   + H    PE L+   + +      I+LDPF GSGT+  VA+KL R++IG
Sbjct: 226 SVWTVATQPLREAHFATYPEKLIVDCIKAGCPESGIVLDPFMGSGTTAVVARKLDRNYIG 285

Query: 251 IEMKQDYIDIATKRIAS 267
            E+  DY+ +A KRI+ 
Sbjct: 286 FELNPDYVCLAKKRISE 302


>gi|218514040|ref|ZP_03510880.1| site-specific DNA-methyltransferase (adenine-specific) protein
           [Rhizobium etli 8C-3]
          Length = 131

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 84/111 (75%), Positives = 94/111 (84%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
             W D IIKG+ +S LE LP  SVD+IFADPPYNLQL G L+RPD SLVDAV D WD+F+
Sbjct: 21  ESWIDTIIKGDCVSALEALPTHSVDVIFADPPYNLQLGGTLHRPDQSLVDAVDDEWDQFA 80

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
           SFEAYDAFTRAWLLACRRVLKP G++WVIGSYHNIFR+G  LQ+LNFWILN
Sbjct: 81  SFEAYDAFTRAWLLACRRVLKPTGSIWVIGSYHNIFRVGATLQDLNFWILN 131


>gi|219849215|ref|YP_002463648.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
           aggregans DSM 9485]
 gi|219543474|gb|ACL25212.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aggregans DSM
           9485]
          Length = 276

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 69/282 (24%), Positives = 110/282 (39%), Gaps = 49/282 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++  G+   VL+ LP+ SVDLIF  PPY         R  H+             + EAY
Sbjct: 8   QLFLGDCRDVLKTLPSDSVDLIFTSPPY-------ADRRKHTYGG---------IAPEAY 51

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIG--------SYHNIFRIGTMLQNLNFWILNDIVWRK 133
             +         RVLKP+GT  +           +  +  +   L+   +    + +W K
Sbjct: 52  VEWFLPIGQELLRVLKPDGTFILNIKEKAEHGERHTYVIELILALRQQGWLWTEEFIWHK 111

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS----------- 182
            N  P     RF++A E LI  + +   K +            D +++            
Sbjct: 112 KNCYPGKWPNRFRDAWERLIQFNKTKHFKMFQEAVMVPMGDWADKRLKHLSQTDLIRDNS 171

Query: 183 -----------DWLIP---ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
                      +W+       +    L  +   + H    PEAL    +   T+ GD +L
Sbjct: 172 RVGSGFGKRVANWVSRDNVYPTNVLHLATETKNRRHSAVFPEALPEWFIKLFTQEGDTVL 231

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
           DPF GSGT+  VA+++ R  IGIE+  +Y  +A + IA   P
Sbjct: 232 DPFMGSGTAIKVARRMNRRGIGIEILPEYFALAEEEIAKEAP 273


>gi|166365170|ref|YP_001657443.1| putative adenine-specific DNA-methyltransferase [Microcystis
           aeruginosa NIES-843]
 gi|166087543|dbj|BAG02251.1| putative adenine-specific DNA-methyltransferase [Microcystis
           aeruginosa NIES-843]
          Length = 349

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 67/274 (24%), Positives = 115/274 (41%), Gaps = 49/274 (17%)

Query: 23  IIKGNSISVLEKLPAKS---VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + +G++   L KL + S   +DL    PPYN+                    +++  S  
Sbjct: 87  LYQGDATDFLSKL-SHSDIKIDLTVTSPPYNIGK-----------------EYERVLSIN 128

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT-------MLQNLNFWILNDIVWR 132
            Y  +   WL    ++ + NG LW+   Y  +   G        +     F++L +IVW+
Sbjct: 129 DYVDWCANWLRQIYQITQDNGALWLNVGYLEVPEKGLCVPIPYLLWDKSPFYLLQEIVWK 188

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM------------ 180
               +      R    +E  ++   +   + YTFN D ++  N                 
Sbjct: 189 YGAGVST--KNRLSPRNEKWLFYLKN--CQEYTFNLDNIRDPNVKYPNQKKNGKYRCNPL 244

Query: 181 ----RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
                  W +P  +  E+  +K+    HP Q P A++ RI+ +S+ P +IILDPF GS +
Sbjct: 245 GKNPSDVWEVPKVTTGEKRSSKE-RTGHPAQFPLAIVERIIQASSNPVEIILDPFAGSCS 303

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
           +G  A  L R F+G E++ DY +IA +R    + 
Sbjct: 304 TGIAALGLGRIFVGFEIRPDYCEIAAERFKRFKK 337


>gi|332655236|ref|ZP_08420976.1| DNA (cytosine-5-)-methyltransferase [Ruminococcaceae bacterium D16]
 gi|332515741|gb|EGJ45351.1| DNA (cytosine-5-)-methyltransferase [Ruminococcaceae bacterium D16]
          Length = 328

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 72/332 (21%), Positives = 117/332 (35%), Gaps = 91/332 (27%)

Query: 12  NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
            +  +F   D I  G+ + +L+ LP  SV      PPY    +             +   
Sbjct: 8   RKELVFIELDIIHTGDCLKILKTLPDDSVHCCVTSPPYYALRDY-----------GMEAQ 56

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN--------------------- 110
             + ++ + Y +         RRVL+P+GTLW+  S                        
Sbjct: 57  IGRETTPKEYISRLTEVFTEVRRVLRPDGTLWLNISDTYAGKGNQGDFVDPKNPNGRTGQ 116

Query: 111 -------------------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
                               + +   L++  +++ NDI+W K NPMP     R    +E 
Sbjct: 117 AVALNNKVEGCKPKDMIGIPWMLAFALRDTGWYLRNDIIWMKDNPMPESVKDRCTRCYEH 176

Query: 152 LIWASPSPKAKGYTFNYDA-----------------------------LKAANEDVQMRS 182
           +   S    +K Y F+Y A                                     + R 
Sbjct: 177 IFLFSK---SKKYFFDYKAISEPIAPATAERLKRGMKGGNKYGKPVPGQPQPQSINRPRE 233

Query: 183 DWLIPICSGSERLRNKDGEKL--------HPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
              I  C  +     +D  K+        H    P  L+   L++    G I+LDPF GS
Sbjct: 234 HGEIKDCDINPLRNKRDVWKINTVPFKGGHYAAYPPKLVETCLLAGCPEGGIVLDPFMGS 293

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           GT+G VA ++ R F+G+E+  +Y ++A KRI 
Sbjct: 294 GTTGMVASQMGRHFVGVELNPEYTELAYKRIG 325


>gi|238027943|ref|YP_002912174.1| Csp231I DNA methyltransferase [Burkholderia glumae BGR1]
 gi|237877137|gb|ACR29470.1| Csp231I DNA methyltransferase [Burkholderia glumae BGR1]
          Length = 332

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 71/282 (25%), Positives = 110/282 (39%), Gaps = 39/282 (13%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY-------RPDHSLVDAVTDSWDKFSSF 78
           GN++  + K+P  SV LI  DPPY +   G  +       R D + V        KF   
Sbjct: 47  GNALDEMRKIPDASVHLIATDPPYFIDGMGSDWNKTSLRTRTDKAGVVGSLPVGMKFDPA 106

Query: 79  EA--YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-- 134
           +A  +  F         R+LKP G            R+    ++  F I + + W     
Sbjct: 107 QARAFQEFMEPIAKEAFRILKPGGFFIAFSQARLYHRLAVAAEDAGFEIRDMLAWHYEGQ 166

Query: 135 ---NPMPNF------------------RGRRF---QNAHETLIWASPSPKAKGYTFNYDA 170
                M +F                   GR+    +   E ++ A   P+   +  N+  
Sbjct: 167 AKAFSMNHFIAKMKISDADKQHLIDSIGGRKTPQLKPQMEPMVMAQK-PRVGTFVENWKQ 225

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKL---HPTQKPEALLSRILVSSTKPGDII 227
            +    D     D   P         ++D +     H T KP  L+  ++   + PG ++
Sbjct: 226 FETGLVDTTASLDGKFPGNVMDVAKPSRDEKGAGNEHLTVKPVLLMEHLIRLFSIPGQVV 285

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           LDPF GSGT+G  A    R FIG+E+  DY  IA+KRIA+ +
Sbjct: 286 LDPFLGSGTTGVAAINTGREFIGVEIDPDYARIASKRIAAAR 327


>gi|266622751|ref|ZP_06115686.1| DNA (cytosine-5-)-methyltransferase [Clostridium hathewayi DSM
           13479]
 gi|288865516|gb|EFC97814.1| DNA (cytosine-5-)-methyltransferase [Clostridium hathewayi DSM
           13479]
          Length = 318

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 64/328 (19%), Positives = 110/328 (33%), Gaps = 91/328 (27%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            DKI  G+S+ VL+ LP   +D     PPY      + Y  D  +         + ++ E
Sbjct: 5   TDKIYCGDSLQVLQTLPDNCLDCCVTSPPY---YALRDYGTDGQI--------GREATPE 53

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI---------------------------- 111
            Y +   A     +RVL P GT W+  +                                
Sbjct: 54  EYVSRITAVFHEVKRVLTPEGTCWLNIADTYCGTGSKADHQDPKYPKGRNGQQVAVNHRA 113

Query: 112 ------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
                       + +   L+   +++ + I+W K N MP     R    +E +   +   
Sbjct: 114 PGCKPKDLIGIPWLVALALRGDGWYLRSSIIWHKGNAMPESTRDRPTRCYEYVFLLTK-- 171

Query: 160 KAKGYTFNYDA-----------------------------------LKAANEDVQMRSDW 184
            +K Y +++ A                                   +           + 
Sbjct: 172 -SKKYYYDWQAVAEPIAPTTAVRLKSGVGKGNKYAATVPGQNQPQKINRPRRKGAYTDEM 230

Query: 185 LIPICS--GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           + P+ S     ++        H    P  L    +++    G I+LDPF GSGT+ A AK
Sbjct: 231 ISPVRSRRNVWQINTASYRGGHFAAFPPKLAETCILAGCPVGGIVLDPFLGSGTTAAAAK 290

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQP 270
            L R ++GIE+  +Y  +A +RI   + 
Sbjct: 291 SLSRRYVGIEINPEYCTLAKQRIGGDEH 318


>gi|28864482|gb|AAO48713.1| BstYI methyltransferase [Geobacillus stearothermophilus]
          Length = 318

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 117/299 (39%), Gaps = 58/299 (19%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
             G+++  L+ LP   V L    PPYN+  + ++                  +S E Y A
Sbjct: 24  HNGDALEFLKTLPDNLVKLAITSPPYNVGKSYEVK-----------------TSVEEYLA 66

Query: 84  FTRAWLLACRRVLKPNGTL-WVIGSYHNIFRI-------GTMLQNLNFWILNDIVWRKSN 135
              A +    RV+  +G++ W +G+Y N   I         + +     + N I+W   +
Sbjct: 67  TQEAVIEELIRVVDDHGSICWQVGNYVNKGEIFPLDIFYYQIFKKHGLKLRNRIIWHFGH 126

Query: 136 PMPNFRGRRFQNAHETLIWASP----------------SPKAKGYTFNYDALKAANEDVQ 179
            +     +RF   +ETL+W +                  P  + Y  +     + N   +
Sbjct: 127 GL--HAKKRFSGRYETLLWFTKSDDYTFNLDPVRVPAKYPGKRHYKGDKKGELSGNPKGK 184

Query: 180 MRSD--------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
             SD        W   +        N   + +HP Q P  L+ R +++ T   D +LDP+
Sbjct: 185 NPSDVWEFVVQEWDKELWEIPNVKANHPEKTIHPCQYPIELVERCVLALTNENDFVLDPY 244

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA-------SVQPLGNIELTVLTGKR 283
            G G+S   A K  R  IG++ +++Y++I  +RI         ++PLG         ++
Sbjct: 245 AGVGSSLIGALKHGRKAIGVDKEKEYVEIGKQRIKDFYDGKLKIRPLGKPVYQPTGREK 303


>gi|162417875|ref|YP_001604638.1| putative methylase [Yersinia pestis Angola]
 gi|162350847|gb|ABX84796.1| DNA methylase [Yersinia pestis Angola]
          Length = 225

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 62/249 (24%), Positives = 106/249 (42%), Gaps = 43/249 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I+GN + ++   P  +VD I  DPPY   + G   R   ++    TD W + +  E Y
Sbjct: 3   RFIQGNCVHIMSGFPDNAVDFILTDPPY---IVGFRDRQGRTIAGDKTDEWLQPACHEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYTSKAAY 107

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G R + A+       P P+              N+ +  +                  G
Sbjct: 108 VGYRHECAYILAKGRPPLPQ-----------NPLNDVIAWKY----------------SG 140

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            + HPT+KP   L  ++ S T PG I+LDPF GSG++   A +  R +IGIE+ + Y   
Sbjct: 141 NRHHPTEKPVTSLQPLIESFTHPGAIVLDPFAGSGSTCVAALQAGRRYIGIELLEQYHRA 200

Query: 261 ATKRIASVQ 269
             +R+A+V+
Sbjct: 201 GQQRLAAVR 209


>gi|218129465|ref|ZP_03458269.1| hypothetical protein BACEGG_01042 [Bacteroides eggerthii DSM 20697]
 gi|254881383|ref|ZP_05254093.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides sp.
           4_3_47FAA]
 gi|217988195|gb|EEC54518.1| hypothetical protein BACEGG_01042 [Bacteroides eggerthii DSM 20697]
 gi|254834176|gb|EET14485.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides sp.
           4_3_47FAA]
          Length = 270

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 63/266 (23%), Positives = 100/266 (37%), Gaps = 38/266 (14%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            D+I   + +  ++++   SVD I AD PY +     L R + S+      +WD+     
Sbjct: 4   TDRIYLMDCMEGMKQIADGSVDAIIADLPYGV-----LNRSNPSV------NWDRQIP-- 50

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                  A     RR+ KP+  + + G    +F    ML     W  N +  +       
Sbjct: 51  -----LAALWEQYRRITKPDSPIILFG--QGLFSAWLMLSQPRLWRYNLVWQKDRVTGHL 103

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS----------------- 182
              R     HE ++       A          +  N   +                    
Sbjct: 104 NAKRMPFRQHEDILVFYKKQPAYHPQMTPCPPERRNHGRRKTEGFTNRCYGTMKLSPVRI 163

Query: 183 -DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
            D   P         +K G   HPTQKP AL+  ++ + T  GD++LD   GSGT+   A
Sbjct: 164 ADDKYPTSVIFMPKEHKKGAFYHPTQKPVALMEYLIRTYTDEGDVVLDNCIGSGTTAVAA 223

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIAS 267
            +  R +IG E++Q Y +IA +RI  
Sbjct: 224 IRTGRHYIGFEIEQAYCEIAERRIQE 249


>gi|161521391|ref|YP_001584818.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           multivorans ATCC 17616]
 gi|189352441|ref|YP_001948068.1| putative adenine-specific DNA-methyltransferase [Burkholderia
           multivorans ATCC 17616]
 gi|327198018|ref|YP_004306387.1| gp20 [Burkholderia phage KS5]
 gi|160345441|gb|ABX18526.1| DNA methylase N-4/N-6 domain protein [Burkholderia multivorans ATCC
           17616]
 gi|189336463|dbj|BAG45532.1| putative adenine-specific DNA-methyltransferase [Burkholderia
           multivorans ATCC 17616]
 gi|310657152|gb|ADP02267.1| gp20 [Burkholderia phage KS5]
          Length = 249

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 67/263 (25%), Positives = 103/263 (39%), Gaps = 32/263 (12%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP--------DHSLVDAVT 69
           +  ++I   ++ SVL  LP   +DL F DPPY+        R            +     
Sbjct: 8   DLINRIHLADATSVLRALPDGCIDLTFTDPPYSSGGTTSASRSQTPSSKYIGGDVKTVYP 67

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
           +         ++  +   WL    RV +    L     +  +  +   +Q   F      
Sbjct: 68  EFQHDSKDQRSWTFWCMTWLAEVYRVSRNEAHLVCFVDWRQLPSLTDAIQAAGFTWRGVA 127

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
           VW K+N     R   F    E L+WA+                        R+D  +P  
Sbjct: 128 VWDKTNGRTRPRAGGFAQQAEFLVWATK-------------------GAVRRADVYLPGV 168

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
             SERL +    K H T+KP  L +R +V     G ++LDPF GSGT    AK+   ++I
Sbjct: 169 -FSERLAHP---KRHMTEKPAQL-AREVVRLAPAGGVVLDPFTGSGTFLDAAKQGGLNWI 223

Query: 250 GIEMKQDYIDIATKRIASVQPLG 272
           G E++  Y  +AT R+A +  LG
Sbjct: 224 GCELEPAYHQVATARLAGLDTLG 246


>gi|325978568|ref|YP_004288284.1| DNA methylase [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
 gi|325178496|emb|CBZ48540.1| DNA methylase [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
          Length = 424

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 105/259 (40%), Gaps = 22/259 (8%)

Query: 21  DKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +++ G+S +   + + L  +S+DL   DPPYN+   G+         D + D       
Sbjct: 163 HRLMCGDSTNPDHLAKLLTGQSIDLYVTDPPYNVAYEGKTKAALTIPNDNLDD------- 215

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            +A+  F         + LK  G  ++  +        T LQ + +     ++W K + +
Sbjct: 216 -QAFQTFLVDAFHNVDQYLKAGGVFYIWHADKERLAFSTALQQVGWLEKQALIWVKDSFV 274

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD---------WLIPI 188
                + +Q  HE  ++      +  +  ++         ++ +S          +    
Sbjct: 275 --LGRQDYQWQHEPCLYGWKPGASHYFVSDFSQSTILESQLETKSKQELIALIKTYQANQ 332

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
            +   R+      + HPT KP ALL R++ SS+K GD +LD F GSG++    ++L R  
Sbjct: 333 PTSILRVNRPTKNEDHPTMKPIALLERLIRSSSKRGDCVLDTFAGSGSTLLACERLGRKS 392

Query: 249 IGIEMKQDYIDIATKRIAS 267
             +E++  Y+     R   
Sbjct: 393 YSMELEPKYVARILNRFQQ 411


>gi|71274631|ref|ZP_00650919.1| DNA methylase N-4/N-6 [Xylella fastidiosa Dixon]
 gi|71899657|ref|ZP_00681811.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
 gi|170730897|ref|YP_001776330.1| DNA modification methylase-like protein [Xylella fastidiosa M12]
 gi|71164363|gb|EAO14077.1| DNA methylase N-4/N-6 [Xylella fastidiosa Dixon]
 gi|71730609|gb|EAO32686.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
 gi|167965690|gb|ACA12700.1| DNA modification methylase-like protein [Xylella fastidiosa M12]
          Length = 273

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 60/278 (21%), Positives = 110/278 (39%), Gaps = 39/278 (14%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ-------LNGQ 56
           K    + +  NS    +  I  G+ I V++ LPA+S  +I   PPYNL+        +G+
Sbjct: 21  KAPKKLPKGDNSARNLRGTIHSGDCIKVMQTLPAESFRVIVTSPPYNLKNSTGNGMKDGR 80

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
             +  ++ +    D+ +     + Y  + R  L    R+L+ +G ++    Y++ +R+  
Sbjct: 81  GGKWANAALIEGYDNHEDVMPHDEYVQWQRDCLTEMMRLLRNDGAIF----YNHKWRVQA 136

Query: 117 MLQNLNFWIL-----NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
            L      I+       I+  + N   NF    F   +E +   +          N    
Sbjct: 137 GLLQDRTDIVTGFPVRQIIIWQRNGGINFNSGYFLPTYEVIYLIAKPDFKLKPKANAIGD 196

Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
                       W IP          ++ +  HP   P  L  R + S       +LDPF
Sbjct: 197 -----------VWTIP----------QESKNPHPAPFPVELAQRCIESVG--AGPVLDPF 233

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            GSGT+   A+ L   ++GIE    Y++++  R+  ++
Sbjct: 234 MGSGTTAVAAEILGYDWVGIEKSPKYVEMSLDRLKRLK 271


>gi|189346320|ref|YP_001942849.1| DNA methylase N-4/N-6 domain protein [Chlorobium limicola DSM 245]
 gi|189340467|gb|ACD89870.1| DNA methylase N-4/N-6 domain protein [Chlorobium limicola DSM 245]
          Length = 293

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 66/287 (22%), Positives = 107/287 (37%), Gaps = 50/287 (17%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            E K  +  G+ +++L++LP  SVDLIF  PPY  Q                        
Sbjct: 1   MEIKTDLYLGDCLNILKELPDNSVDLIFTSPPYADQREKTYGG----------------I 44

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIG---------SYHNIFRIGTMLQNLNFWILN 127
             + Y A+         RVLKP GT  +           S + +  I  M +   ++   
Sbjct: 45  HPDKYVAWFLPIAEQLLRVLKPTGTFVLNIKEKVVNGERSTYVMELILEMKRQQGWFWTE 104

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN------------ 175
           + +W K N  P     RF+++ E LI  + S +                           
Sbjct: 105 EFIWHKKNCYPGKWPNRFRDSWERLIQFNKSKRFYMNQETVMVPMGEWSKSRLKRLSETD 164

Query: 176 -------------EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK 222
                        +++    D      +    L  +   K H    P+ L    +   TK
Sbjct: 165 KTRDESKVGSGFGKNISNWLDREKAYPTNVLHLATECNNKNHSAAFPQGLPEWFIKLFTK 224

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            GD +LDPF GSGT+ AVAK+++R+ IGIE+  +Y ++    +   +
Sbjct: 225 EGDTVLDPFMGSGTTNAVAKRMKRNSIGIEIVPEYYEMVKNELEPTE 271


>gi|325690435|gb|EGD32438.1| prophage LambdaSa04 protein [Streptococcus sanguinis SK115]
          Length = 419

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 53/259 (20%), Positives = 103/259 (39%), Gaps = 37/259 (14%)

Query: 20  KDKIIKGNSISVLEK----LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           K ++I G+S   LE     L  K  +L+  DPPYN+ +     +  +          D  
Sbjct: 172 KHRVICGDSTK-LETYQLLLGDKKANLVVTDPPYNVNVEETAGKIKN----------DDM 220

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
           S  + Y  F     +   + ++ + +++V  +           ++  F++    VW+K+ 
Sbjct: 221 SDADFY-QFLFNMFVNVEQSMEDDASIYVFHADTEGLNFRRAFKDAGFYLSGCCVWKKNA 279

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            +       +Q  HE +++         +            D +  + W       S   
Sbjct: 280 LV--LGRSPYQWQHEPVLYGWKQKGKHQWF----------SDRKQTTIWEYDRPKSS--- 324

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                 K HPT KP  L++  + +S+  G ++LDPF GSG++   A +  R   GIE+ +
Sbjct: 325 ------KEHPTMKPVQLMAYPIQNSSMRGTLVLDPFLGSGSTLIAADQTGRICYGIELDE 378

Query: 256 DYIDIATKRIASVQPLGNI 274
            ++D+  KR        ++
Sbjct: 379 KFVDVIVKRYMEATEKTDV 397


>gi|154150048|ref|YP_001403666.1| DNA methylase N-4/N-6 domain-containing protein [Candidatus
           Methanoregula boonei 6A8]
 gi|153998600|gb|ABS55023.1| DNA methylase N-4/N-6 domain protein [Methanoregula boonei 6A8]
          Length = 239

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 113/247 (45%), Gaps = 20/247 (8%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D + +G++ ++L+KLPA SVDLI  DPP+ +    Q  R +++          +      
Sbjct: 10  DTLYEGDACALLKKLPAGSVDLIVTDPPFAIDFTAQ--RLNYNRTGGNVIEGYREIPAAE 67

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  FTR W+    R L P+G+++V   ++ +  I   +       +N ++W+    +  F
Sbjct: 68  YGKFTRRWIKQATRALSPSGSMYVFSGWNRLRDILEGIDAAGLVTINHLIWKYQFGV--F 125

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
              ++  +H  +++       K YTFN       +  V  R  W     + ++  +    
Sbjct: 126 TKNKYVTSHYHILFVVKD--RKRYTFNKLDHYPEDVWVINREYWKGKKKTPTKLPK---- 179

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
                      L+ +I+  S+ PGD++LDPF GSGT   VA+   R F+G E+  +Y+  
Sbjct: 180 ----------ELVQKIIRYSSNPGDLVLDPFLGSGTVAVVARNECRHFLGFEVVPEYVSF 229

Query: 261 ATKRIAS 267
           A   + +
Sbjct: 230 ARDALRA 236


>gi|331647000|ref|ZP_08348099.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M605]
 gi|331044317|gb|EGI16448.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M605]
          Length = 226

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 102/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I GN + ++   P ++VD I  DPPY +       R   S+    TD W + +  + Y
Sbjct: 3   RLILGNCVDIMSGFPDRAVDFILTDPPYLVGFRD---RSGRSIAGDRTDEWLQPACNQMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R     +   F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMMSFYGWNRVDRFMAAWKKAGFSVVGHLVFTKNYSSKSAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ +                             
Sbjct: 108 VGYRHECAYVLAKGRPALPQNPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GS ++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSASTCVAALQAGRRYIGIELME 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+ +VQ
Sbjct: 196 QYHKAGIERLTAVQ 209


>gi|154499042|ref|ZP_02037420.1| hypothetical protein BACCAP_03034 [Bacteroides capillosus ATCC
           29799]
 gi|150271882|gb|EDM99108.1| hypothetical protein BACCAP_03034 [Bacteroides capillosus ATCC
           29799]
          Length = 342

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 68/335 (20%), Positives = 117/335 (34%), Gaps = 91/335 (27%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
           I +N+       D I  G+ + +++ LP  SV      PPY    +             +
Sbjct: 19  IQQNRRYTTIQLDIIHTGDCLEIMKTLPDDSVHCCVTSPPYYALRDY-----------GM 67

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW--------------VIGSYHNI--- 111
                + ++ + Y +         RRVL+P+GTLW                    N    
Sbjct: 68  EAQIGRETTPKEYISRLTEVFTEVRRVLRPDGTLWLNISDTYAGKGNQGDFIDPKNPYGR 127

Query: 112 -----------------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
                                  + +   L++  +++ NDI+W K NPMP     R    
Sbjct: 128 NGQAVALNNKVEGCKPKDMIGIPWMLAFALRDTGWYLRNDIIWMKDNPMPESVKDRLSRC 187

Query: 149 HETLIWASPSPKAKGYTFNYDALKAA---------NEDVQMRSDWLIPIC---------- 189
           +E +   S    ++ Y F+Y A+               ++  + +  P+           
Sbjct: 188 YEHIFLFSK---SRKYFFDYKAISEPIAPATAERLKRGMKGGNKYGKPVPGQPQPQSINR 244

Query: 190 ------------------SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
                                 ++     +  H    P  L+   L++    G I+LDPF
Sbjct: 245 PREHGEIKDADINPLRNKRDVWKINTVPFKGGHYAAYPPKLVETCLLAGCPEGGIVLDPF 304

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
            GSGT+G VA ++ R F+GIE+   Y ++A KRI 
Sbjct: 305 MGSGTTGMVASQMGRHFVGIELNPAYSELAYKRIG 339


>gi|291165802|gb|EFE27850.1| DNA (cytosine-5-)-methyltransferase [Filifactor alocis ATCC 35896]
          Length = 310

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 71/282 (25%), Positives = 118/282 (41%), Gaps = 34/282 (12%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
           E    +    DK I G++   +  LP   VDL+  DPPYNL  N                
Sbjct: 27  EQSAPLSSVLDKTILGDTFDTIPYLPKNFVDLLIVDPPYNLDKN-------------FNG 73

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
              K  +   Y+ +T+ W+     +LK   +++V   + +   IG +L+   F++ N I 
Sbjct: 74  KQFKQLNDTDYEEYTKQWIQKVIPLLKDTASVYVCCDWKSSLIIGNILKQ-YFFLQNRIT 132

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK---AANEDVQMRSDWLIP 187
           W++           ++N  E + +A+ S     +  +    +   A         DW   
Sbjct: 133 WQREKGRGAMSN--WKNGMEDIWFATKSKNFTFHVEDVKIRRKVLAPYRKNGKPKDWEE- 189

Query: 188 ICSGSER--------------LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
             +G  R                +      HPTQKPE LL++++++S+  GD++ DPF G
Sbjct: 190 TENGKFRNTYPSNFWDDISIPYWSMSENTAHPTQKPEKLLAKLILASSNRGDVVFDPFLG 249

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           SG++   AKKL R F+GIE    Y     KR+       +I+
Sbjct: 250 SGSTSVTAKKLNRHFVGIEQNPQYCIWTEKRLEMADNNSSIQ 291


>gi|307151884|ref|YP_003887268.1| DNA methylase N-4/N-6 domain-containing protein [Cyanothece sp. PCC
           7822]
 gi|306982112|gb|ADN13993.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7822]
          Length = 329

 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 73/301 (24%), Positives = 116/301 (38%), Gaps = 56/301 (18%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           + +G+ +  L  LP +SVDL+FADPP+NL         D   VD              Y 
Sbjct: 28  LYQGDCLKFLSALPDESVDLVFADPPFNLGKQYGEGVSDQMAVDK-------------YI 74

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           ++++ WL    RVLK  G+L+V          G  L     W  + I  R   P    RG
Sbjct: 75  SWSQEWLNESIRVLKSGGSLFVFNLPRWCIEYGAYLNRQGMWFRHWIACRM--PKNFPRG 132

Query: 143 RRFQNAHETLIWASPSP---KAKGYTFNYDALKAANEDVQM--------------RSDWL 185
           +R   AH  L++ +        K YT          E                     W 
Sbjct: 133 KRMSPAHYGLLYYTKGEPTVFNKIYTPIQVCRHCGGEIRDYGGHRKKLNEKGINLMDVWD 192

Query: 186 IP---------------ICSGSERLR-------NKDGEKLHPTQKPEALLSRILVSSTKP 223
            P               + + +E +        ++  +K  P +    +L RI+  ++ P
Sbjct: 193 APEDVWEDATEADADEILWTLTEEMWADIPPVRHRQHKKRMPNELAPIMLERIIAMASNP 252

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
           G II+DPF GSGT+   A+KL+R +IG E+     + A +R+ ++      +     G +
Sbjct: 253 GQIIIDPFGGSGTTFYAAEKLQRYWIGSEIGDT--EPARERLNNLANGLIEQWESARGSK 310

Query: 284 T 284
            
Sbjct: 311 K 311


>gi|156741790|ref|YP_001431919.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156233118|gb|ABU57901.1| DNA methylase N-4/N-6 domain protein [Roseiflexus castenholzii DSM
           13941]
          Length = 329

 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 59/280 (21%), Positives = 110/280 (39%), Gaps = 57/280 (20%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+    ++++P  S+ LI   PPYNL                   +++   S E Y 
Sbjct: 25  VFNGDVSDFIKQIPDNSITLIVTSPPYNLGK-----------------AYENRISIENYL 67

Query: 83  AFTRAWLLACRRVLKPNGTL-WVIGSYHNIFRIGT-------MLQNLNFWILNDIVWRKS 134
                 +    R+LK +G++ W +G++     +         + + +   + N I+WR  
Sbjct: 68  RSQSQLINQLYRILKNDGSICWQVGNFVEDGEVYPLDILYYPIFKEIGMNLRNRIIWRFG 127

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS------------ 182
           + +     +RF   +ET++W +    +  Y FN D+++  ++    R             
Sbjct: 128 HGL--HASKRFSGRYETILWFTK---SDKYIFNLDSVRVPSKYPGKRHFKGPNKGKPSGN 182

Query: 183 ---------------DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
                          DW   +        N   + +HP Q P  L+ R +++ T  GD +
Sbjct: 183 PLGKNPSDIWEVLAQDWEEEVWDIPNVKSNHPEKTVHPCQFPIELIERCVLALTNEGDWV 242

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            DP+ G G+S   A    R  +G E   DY ++A +RI  
Sbjct: 243 FDPYMGVGSSLIAALMHNRRAVGCEKDADYAELARQRIRD 282


>gi|309774777|ref|ZP_07669799.1| DNA (cytosine-5-)-methyltransferase [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308917462|gb|EFP63180.1| DNA (cytosine-5-)-methyltransferase [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 299

 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 115/298 (38%), Gaps = 51/298 (17%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN------------------GQLYRPD 61
            + II GNSI  ++ + ++SV LI +D PY + L+                   Q   P 
Sbjct: 3   TNSIICGNSIEEIKNIDSESVHLILSDIPYGISLDTWDILHNNTNSSLLGTSPAQKKSPV 62

Query: 62  HSLVDAVTDSW---DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
                   + W   DK    E Y  +   W     RVLKP  + +V        R    +
Sbjct: 63  FKKRGKPLNGWSEADKNMPIEYY-NWCSTWAEEWLRVLKPGASCFVFAGRRFSHRCICAM 121

Query: 119 QNLNFWILNDIVWRKSNPMPNFRG------RRFQNAH----------------ETLIW-A 155
           ++  F   + I W K       +       RR  N +                E ++W  
Sbjct: 122 EDAGFIFKDMIAWEKDAAAHRAQNVKVVFERRGDNENATKWEGWKLGNLRPLFEPILWFM 181

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWL-----IPICSGSERLRN-KDGEKLHPTQKP 209
            P P     T N         + +   +       I ICS   R +  +D   LHP QKP
Sbjct: 182 KPYPIGGTLTDNIRLHSVGGYNEEYFKNNPLNNSGIEICSNIIRCKTSQDDRGLHPAQKP 241

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            AL+  ++  +T  G +ILDPF G G++   AK L R +IGIE+  +Y  I ++R+  
Sbjct: 242 VALMEFLINLTTVEGQVILDPFCGCGSTLVAAKNLNREYIGIELNPEYCKIISERLEE 299


>gi|260910196|ref|ZP_05916873.1| DNA (cytosine-5-)-methyltransferase [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260635700|gb|EEX53713.1| DNA (cytosine-5-)-methyltransferase [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 439

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 101/257 (39%), Gaps = 32/257 (12%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           ++++ G+      V+  +  +  D+I  DPPYN+   G          D++ +       
Sbjct: 190 NRLLCGDCRSKKDVVTLMGGRCADMILTDPPYNVAYEGGTEEKMKIENDSMEN------- 242

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            + +  F ++       VLKP G+ +V  +          ++  NF I    +W K   +
Sbjct: 243 -DLFAQFLKSVFENMYAVLKPGGSFYVFHADSEGENFRKAIREANFKIAQCCIWVKDTLV 301

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
              +    Q  HE  ++      A  +  N                      +   R   
Sbjct: 302 MGRQDY--QWQHEPCLYGWKLGAAHYWNSNRKQ-------------------TTIWRFDK 340

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
               ++HPT KP AL++  + +STK G+I++D F GSG++    ++  R    +E+   Y
Sbjct: 341 PRANRIHPTMKPVALMAYPICNSTKNGEIVVDLFSGSGSTIMACQQTDRIGYAMEIDPKY 400

Query: 258 IDIATKRIASVQPLGNI 274
           +  +  R  ++ P  +I
Sbjct: 401 VAASVLRFKAMFPQADI 417


>gi|283778011|ref|YP_003368766.1| DNA methylase N-4/N-6 domain-containing protein [Pirellula staleyi
           DSM 6068]
 gi|283436464|gb|ADB14906.1| DNA methylase N-4/N-6 domain protein [Pirellula staleyi DSM 6068]
          Length = 314

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 59/288 (20%), Positives = 108/288 (37%), Gaps = 51/288 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + ++ G+    L+ LP   VD +   PPY  Q +           +  +    +  S   
Sbjct: 22  NLVLHGDCEEHLKALPDSFVDCVVTSPPYFQQRDY----------EGESAQVGQEESPAE 71

Query: 81  YDAFTRAWLLACRRVLKPNGTLW-VIGSYHNI-------FRIGTMLQNLNFWILNDIVWR 132
           Y           +R L   GTLW VIG  +         +R+   L +  + + +D +W 
Sbjct: 72  YVDRLTRIFSQVQRTLTARGTLWLVIGDKYQNGSQLGMPWRVALALIDSGWRLRSDCIWH 131

Query: 133 KSNPMPNFRGRRFQNAHETLIWASP-----------------------------SPKAKG 163
           K N MP+    R    HE + + +                                  +G
Sbjct: 132 KPNAMPSPVKNRPTTDHEYVFFFTKSADYFYDADAIREPHVTFSENSQMRGGRNHFGKRG 191

Query: 164 YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK----DGEKLHPTQKPEALLSRILVS 219
            T        ++     R D        ++R             H    PE+L+   + +
Sbjct: 192 GTPEAGKNGGSSNLHDGRWDQAFHPLGRNKRTVWSIPLSKNRDAHFAVFPESLVRTCISA 251

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            +  G ++LDPF GSGT+  VA++L R ++GI+  ++Y+++  +R+A+
Sbjct: 252 GSPAGGLVLDPFAGSGTTLLVARELGRRYLGIDCAKEYVELIERRLAA 299


>gi|300713298|ref|YP_003739337.1| DNA methylase family protein [Erwinia billingiae Eb661]
 gi|299060369|emb|CAX53619.1| DNA methylase family protein [Erwinia billingiae Eb661]
          Length = 226

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 62/254 (24%), Positives = 102/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I+G+ I ++   P ++VD I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFIQGDCIQIMSGFPDRAVDFILTDPPYLVGFRD---RSGRTIAGDKTDEWLQPACHEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++   R  +      F I+   V+ K+      +
Sbjct: 60  ------------RVLKNDSLMVSFYGWNRADRFISAWTAAGFRIVGHFVFTKTYASKSAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G   + A+        +   P P  +G+ +                             
Sbjct: 108 VGYTHECAYVLAKGRPRLPEKPLPDVQGWKYT---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T PG I+LDPF GSG+S   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVTSLQPLIESFTHPGAIVLDPFAGSGSSCVAALQSGRRYIGIELME 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 KYHRAGQQRLAAVQ 209


>gi|118576082|ref|YP_875825.1| DNA modification methylase [Cenarchaeum symbiosum A]
 gi|118194603|gb|ABK77521.1| DNA modification methylase [Cenarchaeum symbiosum A]
          Length = 252

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 70/266 (26%), Positives = 109/266 (40%), Gaps = 45/266 (16%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
            + I  LE +  K+VDL   DPPYNL++                D WD F S E +  FT
Sbjct: 1   MDCIRFLEGIGDKTVDLAVVDPPYNLKV----------------DKWDTFESQEDFLKFT 44

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
            AW+      LK    L+V  +  N   +   L        N I W K + M  +  +R+
Sbjct: 45  FAWMDCLVPKLKETAGLYVFNTPFNSAYMLQHLVEQGLMFQNWITWDKRDGMS-YTKKRY 103

Query: 146 QNAHETLIWASPSPKAKGYTFNYD-------------------------ALKAANEDVQM 180
            N  ET+++ +    +  YTFN+D                              +     
Sbjct: 104 ANGQETILFFTK---SGKYTFNHDDIRVPYESVQRIEHAKTRGILKNGKRWYPNSRGRMC 160

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
              W +       ++  K     H T KP  ++ RI+ +S+  GD+++D F GSGT+   
Sbjct: 161 GEIWHMSSERHKVKVNGKVQRLPHKTVKPLDMIKRIITASSNEGDLVIDCFAGSGTTALA 220

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIA 266
            K+L R+FIG +  + Y+  A +RI 
Sbjct: 221 CKQLNRNFIGCDSNEQYVLSARRRIR 246


>gi|317013155|gb|ADU83763.1| type IIS restriction enzyme M1 protein (mod) [Helicobacter pylori
           Lithuania75]
          Length = 258

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 72/261 (27%), Positives = 114/261 (43%), Gaps = 40/261 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   +  + L+KL  KSVDL   DPPYNL++                 SWD F + E 
Sbjct: 4   NKIYIEDVFTFLDKLEDKSVDLAIIDPPYNLKIA----------------SWDSFKNDEE 47

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           +  F+ AW+      LK  G+ ++  +  N       L++     LN I W K +   N 
Sbjct: 48  FLTFSYAWIDKMLPKLKDTGSFYIFNTPFNCALFLAYLRHKKAHFLNFITWVKKDGFAN- 106

Query: 141 RGRRFQNAHETLIWAS-----------------------PSPKAKGYTFNYDALKAANED 177
             +R+ +A E++++ S                          ++KG   N        + 
Sbjct: 107 AKKRYNHAQESILFYSMHKKNYTFNADEVRIAYESTERIKHAQSKGILKNNKRWFPNPKG 166

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                 W I      E+ + K  +  HP+ KP+AL+ R++ +S+   D+ILD F GSG +
Sbjct: 167 KLCLDVWEITSQRHVEKEKGKILKPKHPSIKPKALIERMIKASSHKNDLILDLFSGSGMT 226

Query: 238 GAVAKKLRRSFIGIEMKQDYI 258
             VAK L R+FIG E   +Y+
Sbjct: 227 SLVAKSLERNFIGCESHAEYV 247


>gi|312796824|ref|YP_004029746.1| adenine-specific methyltransferase [Burkholderia rhizoxinica HKI
           454]
 gi|312168599|emb|CBW75602.1| Adenine-specific methyltransferase (EC 2.1.1.72) [Burkholderia
           rhizoxinica HKI 454]
          Length = 313

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 112/246 (45%), Gaps = 27/246 (10%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
             + ++ +  L  +S+DLI ADPPY L   G+ Y  D    +            + + A+
Sbjct: 57  NCDFLTDVGSLADQSIDLILADPPYGL---GKDYGNDSDKRNG-----------QDFIAW 102

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
           T  WL      LKP+G+L+V  ++     I   L+     ++N+I+W +  P      RR
Sbjct: 103 TCRWLELAIPKLKPSGSLYVFCTWQYAPEIFCFLKR-RLTMINEIIWDRRVPSMGGTTRR 161

Query: 145 FQNAHETLIWASPSPKAK------GYTFNYDALKAANEDVQMRSDWL------IPICSGS 192
           F + H+ + + + S             ++    KA +  +   S WL        + S S
Sbjct: 162 FTSVHDNIGFFAVSKDYYFDLDPVRIPYDPVTKKARSRRIFEGSKWLELGYNPKDVWSVS 221

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
              R       HPTQKP  ++ R+++SS  PG ++LDPF GSGT+     + +R F+G E
Sbjct: 222 RLHRQHAERVAHPTQKPLEIIERMVLSSCPPGGLVLDPFMGSGTTAVACARHQRRFVGYE 281

Query: 253 MKQDYI 258
           +  +Y 
Sbjct: 282 INPEYC 287


>gi|170730599|ref|YP_001776032.1| site-specific DNA-methyltransferase [Xylella fastidiosa M12]
 gi|167965392|gb|ACA12402.1| site-specific DNA-methyltransferase [Xylella fastidiosa M12]
          Length = 243

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 63/252 (25%), Positives = 104/252 (41%), Gaps = 30/252 (11%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDAVT-----DSWDKF 75
            +G+++ +L  + + +VD +  DPPY    ++++ +        +++ T     D    F
Sbjct: 12  HEGDALRLLCDIDSANVDAVITDPPYCSGAMRMSDRFKPTKRKYINSTTKHIAPDFDCDF 71

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
                + A++  WL  CRRV +P G L V   +  +  +   +Q+   W    IV     
Sbjct: 72  RDHRGFLAWSSQWLSECRRVTRPGGVLLVFTDWRMLPTLTDAVQSAG-WAWQGIVVWDKT 130

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P    +  RF++  E ++WAS          N  A                    G    
Sbjct: 131 PACRPQLVRFRSQAEFIVWASCGLM------NPKAHTV--------------TPVGVFTT 170

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                EK H   KP AL+  ++     P   ILDPF GSGT+G  A +    FIG+E+  
Sbjct: 171 GTAPREKRHQVGKPLALMEHLIKI-VPPTSTILDPFAGSGTTGVAALRAGHRFIGMELSP 229

Query: 256 DYIDIATKRIAS 267
            Y D+  +R+A 
Sbjct: 230 WYCDVTKQRLAD 241


>gi|333027663|ref|ZP_08455727.1| putative DNA (cytosine-5-)-methyltransferase [Streptomyces sp.
           Tu6071]
 gi|332747515|gb|EGJ77956.1| putative DNA (cytosine-5-)-methyltransferase [Streptomyces sp.
           Tu6071]
          Length = 248

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 57/253 (22%), Positives = 95/253 (37%), Gaps = 33/253 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ------LNGQLYRPDHSLVDAVTD---SW 72
            + +G+++++L+ LP +SV  +  DPPYN          G+  R  +   ++  D     
Sbjct: 4   TLHRGDALTILKTLPDESVHAVITDPPYNSGGRTSSERTGRTARAKYVTSNSAHDLATFP 63

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
            +     +Y ++    L    R    +    V   +         LQ   +     I W 
Sbjct: 64  GENRDQRSYRSWLTELLTEAYRAATEHSVAMVFSDWRQEPTTTDALQMAGWTWSGTISWI 123

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K    P   G   +   E + W                            D  +P   G 
Sbjct: 124 KPASRPRKGG--PKQDTEFVTWGVKGAL------------------DNTRDLYLP---GH 160

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
                   +++H TQKP  ++ R LV     G  +LDPF GSG +G  A +  R+F+G+E
Sbjct: 161 YIASQPRKDRVHITQKPVEIM-RQLVKVCPEGGTVLDPFTGSGATGVAALREGRNFLGVE 219

Query: 253 MKQDYIDIATKRI 265
           +   Y DIA +R+
Sbjct: 220 LSTHYADIAERRL 232


>gi|281425066|ref|ZP_06255979.1| DNA (cytosine-5-)-methyltransferase [Prevotella oris F0302]
 gi|281400910|gb|EFB31741.1| DNA (cytosine-5-)-methyltransferase [Prevotella oris F0302]
          Length = 442

 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 101/257 (39%), Gaps = 32/257 (12%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           ++++ G+      V   +  ++ D+I  DPPYN+   G          D++ +       
Sbjct: 193 NRLMCGDCRAKKDVAALMNGRTADMILTDPPYNVNYEGGGEGKLTIQNDSMEN------- 245

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            + +  F ++       ++KP G+ +V  +          ++   F I    +W K + +
Sbjct: 246 -DLFLRFLQSVFNVMFAIVKPGGSFYVFHADSEGENFRRAIREAGFKIAQCCIWVKDSLV 304

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
              +    Q  HE  ++      A  +  +       N D                    
Sbjct: 305 MGRQDY--QWQHEPCLYGWKPGAAHFWNADRKQTTIWNFDKP------------------ 344

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
               ++HPT KP AL++  + +STK GD+++D F GSG++    ++  R   G+E+   Y
Sbjct: 345 -KANRIHPTMKPIALMAYPITNSTKNGDVVVDLFSGSGSTIMACQQTDRIGYGMEIDPKY 403

Query: 258 IDIATKRIASVQPLGNI 274
           +    +R  ++ P   +
Sbjct: 404 VAATVRRFMAMFPQQPV 420


>gi|282164886|ref|YP_003357271.1| putative DNA methylase [Methanocella paludicola SANAE]
 gi|282157200|dbj|BAI62288.1| putative DNA methylase [Methanocella paludicola SANAE]
          Length = 305

 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 68/266 (25%), Positives = 106/266 (39%), Gaps = 43/266 (16%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           DKI    S   +E+LP  SV L+   PPYN+                    +D+  S + 
Sbjct: 54  DKIFCK-SSEHMEELPDNSVHLMVTSPPYNVGK-----------------EYDENLSLKE 95

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGS--------YHNIFRIGTMLQNLNFWILNDIVWR 132
           Y  F         RVL P G + +  +          + F I  ML ++ F +  +I+W 
Sbjct: 96  YLDFLANVWRDVYRVLVPGGRVCLNVANLGRKPYLPLHSFIIKDML-DIGFLMRGEIIWN 154

Query: 133 KSNPMPNFRGRR---------FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
           K++                   ++ HE ++  S    ++    N  +     E +    +
Sbjct: 155 KASSAGGSTAWGSFQSASNPTLRDVHEYIMIFSKQSFSRNNDCNKKSSITKEEFL----E 210

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           +   I S       K G   HP   P  L  R +   T   DIILDPF GSGT+   A +
Sbjct: 211 YTKSIWSFKSESATKIG---HPAPYPIELPLRCIKLYTFEDDIILDPFMGSGTTAIAALQ 267

Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQ 269
           + R F+G ++ +DYI +A KRI   +
Sbjct: 268 VNRHFVGYDIDKDYIAVAEKRIKKYR 293


>gi|189461076|ref|ZP_03009861.1| hypothetical protein BACCOP_01723 [Bacteroides coprocola DSM 17136]
 gi|265753960|ref|ZP_06089315.1| DNA methylase [Bacteroides sp. 3_1_33FAA]
 gi|189432166|gb|EDV01151.1| hypothetical protein BACCOP_01723 [Bacteroides coprocola DSM 17136]
 gi|263235674|gb|EEZ21198.1| DNA methylase [Bacteroides sp. 3_1_33FAA]
          Length = 270

 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 63/266 (23%), Positives = 100/266 (37%), Gaps = 38/266 (14%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            D+I   + +  ++++   SVD I AD PY +     L R + S+      +WD+   F 
Sbjct: 4   TDRIYLMDCMEGMKQIADSSVDAIIADLPYGV-----LNRSNPSV------NWDRQIPFA 52

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           A            RR+ KP+  + + G    +F    ML     W  N +  +       
Sbjct: 53  ALWE-------QYRRITKPDSPIILFG--QGLFSAWLMLSQPRLWRYNLVWQKDRVTGHL 103

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS----------------- 182
              R     HE ++                  +  N   +                    
Sbjct: 104 NAKRMPLRQHEDILVFYKKQPVYHPQMTPCPPERRNHGRRKTEGFTNRCYGTMKLSPVRI 163

Query: 183 -DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
            D   P         +K G   HPTQKP AL+  ++ + T  GD++LD   GSGT+   A
Sbjct: 164 ADDKYPTSVIFMPKEHKKGAFYHPTQKPVALMEYLIRTYTDEGDVVLDNCIGSGTTAVAA 223

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIAS 267
            +  R +IG E++Q Y +IA +RI  
Sbjct: 224 IRTGRHYIGFEIEQVYCEIAERRIQE 249


>gi|159028859|emb|CAO90664.1| nmeSIM [Microcystis aeruginosa PCC 7806]
          Length = 349

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 67/274 (24%), Positives = 115/274 (41%), Gaps = 49/274 (17%)

Query: 23  IIKGNSISVLEKLPAKS---VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + +G++   L KL + S   +DL    PPYN+                    +++  S  
Sbjct: 87  LYQGDATDFLSKL-SHSDIKIDLTVTSPPYNIGK-----------------EYERVLSIN 128

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT-------MLQNLNFWILNDIVWR 132
            Y  +   WL    ++ + NG  W+   Y  +   G        +     F++L +IVW+
Sbjct: 129 DYVDWCANWLGQIYQITQDNGAFWLNVGYLEVPEKGLCVPIPYLLWDKSPFYLLQEIVWK 188

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM------------ 180
               +      R    +E  ++   +   + YTFN D ++  N                 
Sbjct: 189 YGAGVST--KNRLSPRNEKWLFYLKN--CQEYTFNLDNIRDPNVKYPNQKKNGKYRCNPL 244

Query: 181 ----RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
                  W +P  +  E+  +K+    HP Q P A++ RI+ +S+ P +IILDPF GS +
Sbjct: 245 GKNPSDVWEVPKVTTGEKRSSKE-RTGHPAQFPLAIVERIIQASSNPVEIILDPFAGSCS 303

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
           +G  A  L R F+G E++QDY +IA +R    + 
Sbjct: 304 TGIAALGLGRIFVGFEIRQDYCEIAAERFKRFKK 337


>gi|15645979|ref|NP_208159.1| type IIS restriction enzyme M1 protein (mod) [Helicobacter pylori
           26695]
 gi|2314538|gb|AAD08411.1| type IIS restriction enzyme M1 protein (mod) [Helicobacter pylori
           26695]
          Length = 260

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 72/261 (27%), Positives = 113/261 (43%), Gaps = 40/261 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   +  + L+KL  KSVDL   DPPYNL++                 SWD F + E 
Sbjct: 4   NKIYIEDVFTFLDKLEDKSVDLAIIDPPYNLKIA----------------SWDSFKNDEE 47

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           +  F+ AW+      LK  G+ ++  +  N       L +     LN I W K +   N 
Sbjct: 48  FLTFSYAWIDKMLPKLKDTGSFYIFNTPFNCALFLAYLHHKKVHFLNFITWVKKDGFAN- 106

Query: 141 RGRRFQNAHETLIWAS-----------------------PSPKAKGYTFNYDALKAANED 177
             +R+ +A E++++ S                          ++KG   N        + 
Sbjct: 107 AKKRYNHAQESILFYSMHKKNYTFNADEIRIAYESAERIKHAQSKGILKNNKRWFPNPKG 166

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                 W I      E+ + K  +  HP+ KP+AL+ R++ +S+   D+ILD F GSG +
Sbjct: 167 KLCLDVWEITSQRHVEKEKGKILKPKHPSIKPKALIERMIKASSHKNDLILDLFSGSGMT 226

Query: 238 GAVAKKLRRSFIGIEMKQDYI 258
             VAK L R+FIG E   +Y+
Sbjct: 227 SLVAKSLERNFIGCESHAEYV 247


>gi|114328990|ref|YP_746147.1| modification methylase MjaV [Granulibacter bethesdensis CGDNIH1]
 gi|114317164|gb|ABI63224.1| modification methylase MjaV [Granulibacter bethesdensis CGDNIH1]
          Length = 326

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 70/275 (25%), Positives = 102/275 (37%), Gaps = 41/275 (14%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           E + ++  G+ ++VL  L   SVD+I   PPYNL L    Y                   
Sbjct: 68  EDRHRLYCGDCLTVLPFLAEGSVDVIVTSPPYNLDLGYASYLDSRGE------------- 114

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVI--GSYHNIF---------RIGTMLQNLNFWIL 126
            E Y  +      A +RVL P G+ ++   GS    +         R   +LQN   WI 
Sbjct: 115 -EEYLDWMTQVATALKRVLAPGGSFFLNVSGSPSRPWLPFELIVRLRTLFVLQNHIVWIK 173

Query: 127 NDIVWRKSNP--MPNFRGRRFQNAHETLIWASPSPKAK----------GYTFNYDALKAA 174
           +      S     P    R   +A E +   +     K              N      A
Sbjct: 174 SVATPAVSVGHYKPVNGKRFLNHAQEHIFHLTHKGDVKLDRLAVGVPYKDKSNIVRRGHA 233

Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
            +     + W IP     E +R+K  + LHP   P  L    +        ++LDPF G+
Sbjct: 234 QDLRCRGNTWFIPY----ETVRSKSQKFLHPGTFPVTLPRWCIRLHGVADALVLDPFMGT 289

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           GT+G  A+      IGIE+ Q YI IA  R+   +
Sbjct: 290 GTTGVAAQAEGARSIGIELDQGYISIAANRMMEAE 324


>gi|147919272|ref|YP_686992.1| putative N6 adenine-specific DNA methyltransferase [uncultured
           methanogenic archaeon RC-I]
 gi|110622388|emb|CAJ37666.1| putative N6 adenine-specific DNA methyltransferase [uncultured
           methanogenic archaeon RC-I]
          Length = 307

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 59/278 (21%), Positives = 99/278 (35%), Gaps = 27/278 (9%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           + QK S    EN     +  D+I   +S   +E+LP  SV L+   PPYN+         
Sbjct: 49  LVQKKSAGYVENSVPA-DRMDQIFACSS-EQMEELPDCSVHLMVTSPPYNVGK------- 99

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG-TLWVIGSYHNIFRI----- 114
                      +D+  + + Y  F         RVL P G     + +      +     
Sbjct: 100 ----------EYDEDLTLQEYRDFLSRVWKETYRVLVPGGRACVNVANLGRKPYLSLSSL 149

Query: 115 -GTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
               L    F +  +I+W K+             +               ++ +  +   
Sbjct: 150 LTADLLEAGFLMRGEIIWNKAATASPSTAWGSWQSASNPTLRDVHEYILVFSKDTFSRAG 209

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFF 232
                 +  D  +           +   K+ HP   P  L +R +   T  GD++LDPF 
Sbjct: 210 KGRTSTITRDEFLEYTKSVWTFGAESARKIGHPAPFPVELPARCIKLYTFEGDVVLDPFM 269

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
           GSGT+   A +  R F+G E+  +Y++ A  RI + Q 
Sbjct: 270 GSGTTAVAALQNGRHFVGYEIDPEYVEKAEARIRACQK 307


>gi|317052819|ref|YP_004119585.1| DNA methylase N-4/N-6 domain-containing protein [Pantoea sp. At-9b]
 gi|316953559|gb|ADU73029.1| DNA methylase N-4/N-6 domain protein [Pantoea sp. At-9b]
          Length = 214

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 102/252 (40%), Gaps = 53/252 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + G+S+ V+   P  S+D I  DPPY +       R   S+ + V   W   +S + Y
Sbjct: 3   RFMHGDSVQVMGGFPDNSIDFILTDPPYLVGFKD---RSGRSIANDVNSEWVLPASQQMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK N        ++ +       +   F ++  +V+ K       F
Sbjct: 60  ------------RVLKTNSLAVSFYGWNRVDIFMQAWKAAGFRVVGHLVFTKPYASKSAF 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G + ++A+        +  +P P    + +                             
Sbjct: 108 VGYQHESAYVLAKGRPALPRNPLPDVMPWQYT---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP ++L  ++ S T+PGD++LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNRHHPTEKPVSILRPLIESFTQPGDLVLDPFAGSGSTCVAADQCGRRWIGIELME 195

Query: 256 DYIDIATKRIAS 267
            Y   A +R+  
Sbjct: 196 QYHTAALRRLGE 207


>gi|317014760|gb|ADU82196.1| type IIS restriction enzyme M1 protein (mod) [Helicobacter pylori
           Gambia94/24]
          Length = 260

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 71/269 (26%), Positives = 112/269 (41%), Gaps = 40/269 (14%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   +  + L+KL  KSVDL   DPPYNL++                 SWD F + E 
Sbjct: 4   NKIYIEDVFTFLDKLEDKSVDLAIIDPPYNLKIA----------------SWDSFKNDEE 47

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           +  F+ AW+      +K  G+ ++  +  N       L       LN I W K +   N 
Sbjct: 48  FLTFSYAWIDKVLPKIKDTGSFYIFNTPFNCALFLAYLCQKKAHFLNFITWVKKDGFAN- 106

Query: 141 RGRRFQNAHETLIWAS-----------------------PSPKAKGYTFNYDALKAANED 177
             +R+ +A E++++ S                          ++KG   N        + 
Sbjct: 107 AKKRYNHAQESILFYSMHKKNYTFNADEVRTAYESTERIKHAQSKGILKNNKRWFPNPKG 166

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                 W I      E+   K  +  HP+ KP+AL+ R++ +S+   D+ILD F GSG  
Sbjct: 167 KLCLDVWEITSQRHVEKENGKILKPKHPSIKPKALIERMIKASSNENDLILDLFSGSGMI 226

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
             VAK L R+FIG E    Y+  + + + 
Sbjct: 227 SLVAKSLGRNFIGCETHAGYVHESLEMLK 255


>gi|257792343|ref|YP_003182949.1| DNA methylase N-4/N-6 domain-containing protein [Eggerthella lenta
           DSM 2243]
 gi|257476240|gb|ACV56560.1| DNA methylase N-4/N-6 domain protein [Eggerthella lenta DSM 2243]
          Length = 265

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 63/255 (24%), Positives = 100/255 (39%), Gaps = 32/255 (12%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ------LNGQLYRPDHS--LVDAVTDSW 72
           + I   ++++ L +L + S D +  DPPY+          G+  +   S  ++D   + +
Sbjct: 7   NTIRNVDALAGLRELESDSCDALLTDPPYSSGGMFRGDRAGKTSKKYQSTGVIDVKPEFY 66

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
                  ++  +   WL  C RVLK      V   +  I      LQ   F       W 
Sbjct: 67  GDNRDQLSFMHWCAMWLSECHRVLKQGSVAMVFTDWRQIAATVNALQMGGFIYRGVFSWI 126

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K    P     RF +  E  +W S  P                 D      +        
Sbjct: 127 KPAARPQ--KGRFTSNAEYCVWGSKGPMP--------------SDGCCIKGYF------- 163

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           E+      +++H TQKP  LL  +L   T  G  +LDPF GSG++   A +  RSFIG E
Sbjct: 164 EKSPEPTAKRIHSTQKPVELLEHLLKI-TPEGCTVLDPFMGSGSTAIAAIRTGRSFIGFE 222

Query: 253 MKQDYIDIATKRIAS 267
           M ++Y  +A  R+++
Sbjct: 223 MSEEYCHLANGRVSA 237


>gi|126179572|ref|YP_001047537.1| DNA methylase N-4/N-6 domain-containing protein [Methanoculleus
           marisnigri JR1]
 gi|125862366|gb|ABN57555.1| DNA methylase N-4/N-6 domain protein [Methanoculleus marisnigri
           JR1]
          Length = 284

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 66/286 (23%), Positives = 103/286 (36%), Gaps = 58/286 (20%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I   + I  + +LPA SVD+I   PPYN+  +               +S+D     E 
Sbjct: 14  NTIHTMDCIEGMRRLPAGSVDVIVTSPPYNIGKDY--------------NSYDDRKPRED 59

Query: 81  YDAFTRAWLLACRRVLKPNGTL-----------WVIGSYHNIFRIGTMLQNLNFWILNDI 129
           Y  +   +     RVL  +G+            W+       FR    LQN+  W+ +  
Sbjct: 60  YLGWLAEFAAGAARVLADDGSFFLNIGGKPRDPWIPFDAVQRFRPHFELQNVIHWVKSIA 119

Query: 130 VWRKSNPM--------------PNFRGRRFQNAHETLIWASPSPKA----------KGYT 165
           + +                   P    R     HE +   +                   
Sbjct: 120 IEKADMGGYENITGDIAVGHYQPVNSARYLSQCHEHIFHFTKGGDVALDKLGVGVPYQDK 179

Query: 166 FNYDALKAANEDVQMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILV-SSTKP 223
            N    KAA  D++ R + W IP  +           + HPT  PE L    +     +P
Sbjct: 180 SNIGRWKAAERDLRDRGNTWFIPYRTI-------RSSRPHPTSFPEKLPEMCIRLHGCRP 232

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           G ++LDPF G G++   A  L   +IG E+  +Y +IA  RIA  +
Sbjct: 233 GMLVLDPFMGIGSTALAAIALGADYIGFEIDPEYREIAESRIAGAR 278


>gi|13449148|ref|NP_085364.1| hypothetical protein pWR501_0210 [Shigella flexneri 5a]
 gi|13310696|gb|AAK18520.1|AF348706_209 orf, hypothetical [Shigella flexneri 5a]
 gi|12329114|emb|CAC05845.1| unnamed protein product [Shigella flexneri]
          Length = 227

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 105/254 (41%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R  +  +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+L PF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLGPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|294496741|ref|YP_003560434.1| hypothetical protein pKpQIL_p057 [Klebsiella pneumoniae]
 gi|150958448|gb|ABR80476.1| hypothetical protein KPN_pKPN4p07097 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|293339450|gb|ADE44004.1| hypothetical protein [Klebsiella pneumoniae]
          Length = 258

 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 65/260 (25%), Positives = 105/260 (40%), Gaps = 39/260 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I GN I V+   P ++VDLI  DPPY +       R    +   VTD W + ++ E Y
Sbjct: 28  RFILGNCIDVMRGFPDRAVDLIVTDPPYLVGFKD---RQGRQIAGDVTDEWLQPATLEMY 84

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                       RVLK +  +    S++ + R     +   F+ +  +V+ K+       
Sbjct: 85  ------------RVLKKDALMVSFYSWNRVDRFMAAWKAAGFYAVGQLVFTKNYASNR-- 130

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
                         +   +     + ++      +   +     +P            G 
Sbjct: 131 -------------RNARARRGFVDYCHEGAYVLAKGRPVPPLKPLPDVLPFPYT----GN 173

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
            LHPTQKP   L  ++ S + PG I+LDPF GSG++   A +  R +IGIEM   Y    
Sbjct: 174 TLHPTQKPVEALQPLIESFSAPGAIVLDPFAGSGSTCVAAYRAGRRYIGIEMLAQYHRAG 233

Query: 262 TKRIASVQ-----PLGNIEL 276
           T+R+A++      P  N E 
Sbjct: 234 TERLAAMHRAVNTPAANDEW 253


>gi|304439210|ref|ZP_07399128.1| DNA (cytosine-5-)-methyltransferase [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304372342|gb|EFM25930.1| DNA (cytosine-5-)-methyltransferase [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 411

 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 55/269 (20%), Positives = 104/269 (38%), Gaps = 35/269 (13%)

Query: 20  KDKIIKGNSISVL--EKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K K+I G+S   +  EKL  +S  +LI  DPPYN+   G   +  +  ++          
Sbjct: 167 KHKLICGDSTDEITYEKLMGESKANLIITDPPYNVNYEGSAGKIKNDNMEQGK------- 219

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
               +  F  +  L   + L  +G+++V  +           Q+  F++    +W+K + 
Sbjct: 220 ----FYEFLLSSFLNMEKFLADDGSIYVFHADTEGLNFRKAFQDAGFYLSGTCIWKKQSL 275

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +       +Q  HE +++         +                  ++  P  +G     
Sbjct: 276 V--LGRSPYQWQHEPILYGWKKKGKHNWY--------TGRKESTIWEFDKPRKNGD---- 321

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                  HPT KP  LLS  + +S+    I+LDPF GSG++    ++  R    IE+ + 
Sbjct: 322 -------HPTMKPIPLLSYPIKNSSMTNSIVLDPFGGSGSTLIACEQTDRICRMIELDEK 374

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTE 285
           ++D+   R   +         +  GK  +
Sbjct: 375 FVDVIVNRFIELVGSDKDVSLLRDGKEYK 403


>gi|229269516|ref|YP_001338706.2| putative methylase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 233

 Score =  158 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 65/260 (25%), Positives = 105/260 (40%), Gaps = 39/260 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I GN I V+   P ++VDLI  DPPY +       R    +   VTD W + ++ E Y
Sbjct: 3   RFILGNCIDVMRGFPDRAVDLIVTDPPYLVGFKD---RQGRQIAGDVTDEWLQPATLEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                       RVLK +  +    S++ + R     +   F+ +  +V+ K+       
Sbjct: 60  ------------RVLKKDALMVSFYSWNRVDRFMAAWKAAGFYAVGQLVFTKNYASNR-- 105

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
                         +   +     + ++      +   +     +P            G 
Sbjct: 106 -------------RNARARRGFVDYCHEGAYVLAKGRPVPPLKPLPDVLPFPYT----GN 148

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
            LHPTQKP   L  ++ S + PG I+LDPF GSG++   A +  R +IGIEM   Y    
Sbjct: 149 TLHPTQKPVEALQPLIESFSAPGAIVLDPFAGSGSTCVAAYRAGRRYIGIEMLAQYHRAG 208

Query: 262 TKRIASVQ-----PLGNIEL 276
           T+R+A++      P  N E 
Sbjct: 209 TERLAAMHRAVNTPAANDEW 228


>gi|87306946|ref|ZP_01089092.1| DNA modification methylase M.SthI [Blastopirellula marina DSM 3645]
 gi|87290319|gb|EAQ82207.1| DNA modification methylase M.SthI [Blastopirellula marina DSM 3645]
          Length = 302

 Score =  158 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 67/308 (21%), Positives = 114/308 (37%), Gaps = 55/308 (17%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           M +K+S    +         D I  G++  VL   P + +D++   PPY  Q + Q    
Sbjct: 1   MPRKDSPKRGKLSPPP---LDTIHSGDATVVLADWPDEFIDVVVTSPPYFQQRDYQ---- 53

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN--------IF 112
                    D      +   Y     A     RR LKP G++WV+              +
Sbjct: 54  -------GEDQIGLEKTPAEYIDRLVALFAQVRRTLKPTGSIWVVLGDKYVSGELLGMPW 106

Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK---------G 163
           R    +++  + + +D++W+K N MP+    R    HE + + S S              
Sbjct: 107 RFALAMKDAGWILRSDVIWQKPNAMPSSVKTRPTTDHEYVFFFSKSKDYYYDADAIREPH 166

Query: 164 YTFNYDALKAANEDVQM--------------------RSDWLIPICSGSERLRNKDG--- 200
            TF+ ++                              R D        ++R         
Sbjct: 167 VTFSENSRMKGGRRHFHQRGGTPEAGKNGGSSNLHDARWDQAFHPQGRNKRTVWSISLSK 226

Query: 201 -EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
             + H    PE L+   L+++     + LDPF GSGT G VA+KL R ++G++   +Y +
Sbjct: 227 FREAHFAVFPEKLVETCLLATCPAEGVALDPFMGSGTVGVVARKLGRHYLGVDQSAEYCE 286

Query: 260 IATKRIAS 267
           +A KR+  
Sbjct: 287 MARKRLEQ 294


>gi|304383381|ref|ZP_07365847.1| DNA (cytosine-5-)-methyltransferase [Prevotella marshii DSM 16973]
 gi|304335549|gb|EFM01813.1| DNA (cytosine-5-)-methyltransferase [Prevotella marshii DSM 16973]
          Length = 439

 Score =  158 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 100/257 (38%), Gaps = 32/257 (12%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           ++++ G+      V+  +  +  D+I  DPPYN+   G          D++ +       
Sbjct: 190 NRLMCGDCRAKKDVVALMNGRVADMILTDPPYNVNYEGGGDNKLTIQNDSMEN------- 242

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            + +  F ++       ++KP G+ +V  +          ++   F I    +W K   +
Sbjct: 243 -DLFLRFLQSVFNMMFTIIKPGGSFYVFHADSEGENFRRAIREAGFKIAQCCIWAKDTLV 301

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
              +    Q  HE  ++      A  +  +       N D                    
Sbjct: 302 MGRQDY--QWQHEPCLYGWKPGAAHFWNADRKQTTIWNFDKP------------------ 341

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
               K+HPT KP AL++  + +STK G+I++D F GSG++    ++  R   G+E+   Y
Sbjct: 342 -KANKIHPTMKPVALMAYPITNSTKNGNIVVDMFSGSGSTIMACQQTDRIGYGMEIDPKY 400

Query: 258 IDIATKRIASVQPLGNI 274
           +    +R  ++ P   +
Sbjct: 401 VAATVRRFMAMFPQQPV 417


>gi|225870605|ref|YP_002746552.1| modification DNA methylase [Streptococcus equi subsp. equi 4047]
 gi|213033062|emb|CAP20345.1| modification DNA methylase [Streptococcus equi subsp. equi]
 gi|225700009|emb|CAW94012.1| modification DNA methylase [Streptococcus equi subsp. equi 4047]
          Length = 344

 Score =  158 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 76/362 (20%), Positives = 133/362 (36%), Gaps = 102/362 (28%)

Query: 5   NSLAINENQNS-IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYR 59
           N ++++ ++   I E  +KII  +++  L K+P +S+      PPY    N    GQ+ R
Sbjct: 2   NRMSVSRSKEEFIKENTNKIICSDALETLRKIPDESISCCITSPPYYRLRNYHKEGQIGR 61

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN--------- 110
                           S+ E Y           RR LK  GT +++              
Sbjct: 62  E---------------STVEEYLDRLLQVFREVRRALKKEGTCFIVIGDSYADSGGGKGQ 106

Query: 111 --------------------------------IFRIGTMLQNLNFWILNDIVWRKSNPMP 138
                                            +R+  +L+   +++ +DI+W K N MP
Sbjct: 107 YIDPKYPKARNGSNALATENISGYKSKDLMGIPWRLALLLREDGWYLRSDIIWHKENAMP 166

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
                R   ++E +   + SP    Y ++YDA+    ++V  +  ++    S ++ L+  
Sbjct: 167 EACRDRPTRSYEHIFLLTKSP---KYYYDYDAMVEPMKEVSKKR-YVRGRKSDNKYLKEN 222

Query: 199 DGEKL-------------------------------------HPTQKPEALLSRILVSST 221
            G KL                                     H    P  L+   +++  
Sbjct: 223 SGAKLQKINEARKYGEYKGDNVPQFRNKRDIWTINTTSFRGNHYATFPPKLVEICMIAGC 282

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
              +I+LDPF GSGT G VA +  R +IGIE+ ++Y+++A  RI+      N E      
Sbjct: 283 PKNEIVLDPFIGSGTVGFVALRHNRKYIGIELNEEYVNLAKNRISEEVKKFNEEQKQEVQ 342

Query: 282 KR 283
           K 
Sbjct: 343 KE 344


>gi|119961011|ref|YP_948482.1| adenine specific DNA methylase [Arthrobacter aurescens TC1]
 gi|119947870|gb|ABM06781.1| adenine specific DNA methylase [Arthrobacter aurescens TC1]
          Length = 304

 Score =  158 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 62/270 (22%), Positives = 109/270 (40%), Gaps = 26/270 (9%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL---------------NGQLYRPDHSLV 65
           + ++  ++   L  LP  +  LI+ DPP+N                  +G          
Sbjct: 12  NLVVHADNAEFLPTLPDGAFTLIYVDPPFNTGRVQRRQETRMVRNADGDGDRVGFKGRSY 71

Query: 66  DAVTDSWDKFSS-FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--N 122
           D +  +   +   F  Y +F    L+   R+L  +GTL++   Y  +     ML ++   
Sbjct: 72  DTIKGALHSYDDAFSDYWSFLEPKLVEAWRLLADDGTLYLHLDYREVHYAKVMLDSIFGR 131

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF------NYDALKAANE 176
              LN+I+W            R+   H+ ++    +P    +         Y A      
Sbjct: 132 ECFLNEIIWAYDYGA--RAKNRWPTKHDNILVYVKNPTKYHFDNAEVDREPYMAPGLVTP 189

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
             +        +   +        +  +PTQKPE L+ RI+ +S++ GD  LD F GSGT
Sbjct: 190 AKRELGKLPTDVWWHTIVSPTGREKTGYPTQKPEGLVRRIVSASSREGDWCLDFFAGSGT 249

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
            GAVA KL R+F+ ++  +  I++  KR+ 
Sbjct: 250 LGAVAAKLGRNFVCVDQNEQAIEVMRKRLG 279


>gi|293386443|ref|YP_003540605.1| DNA methylase [Erwinia amylovora ATCC 49946]
 gi|291201086|emb|CBJ48224.1| DNA methylase [Erwinia amylovora ATCC 49946]
          Length = 226

 Score =  158 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 66/255 (25%), Positives = 105/255 (41%), Gaps = 53/255 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + ++GN I ++   P KSVD I  DPPY +       R   ++   +TD W + +  E Y
Sbjct: 3   RFVQGNCIEIMSGYPEKSVDFILTDPPYLVGFRD---RSGRTIAGDITDEWLQPACREMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++   R  T  +   F I+   V+ KS      F
Sbjct: 60  ------------RVLKNDALMVSFYGWNRADRFITEWKAAGFTIVGHFVFTKSYTSKSAF 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G + + A+        +  +P    +G+ +                             
Sbjct: 108 VGYQHECAYILAKGRPRLPENPLSDVQGWQYT---------------------------- 139

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G K HPT+KP   L  ++ S T PG I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 140 ----GNKHHPTEKPVTSLQPLIESFTHPGAIVLDPFAGSGSTCVAALQSGRRYIGIELME 195

Query: 256 DYIDIATKRIASVQP 270
            Y     +R+A+VQ 
Sbjct: 196 KYHRAGQRRLAAVQH 210


>gi|317010047|gb|ADU80627.1| type IIS restriction enzyme M1 protein (mod) [Helicobacter pylori
           India7]
          Length = 260

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 71/261 (27%), Positives = 113/261 (43%), Gaps = 40/261 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   +  + L+KL  KSVDL   DPPYNL++                 SWD F + E 
Sbjct: 4   NKIYIEDVFTFLDKLEDKSVDLAIIDPPYNLKIA----------------SWDSFKNDEE 47

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           +  F+ AW+      +K  G+ ++  +  N       L++     LN I W K +   N 
Sbjct: 48  FLTFSYAWIDKVLPKIKDTGSFYIFNTPFNCALFLAYLRHKKVHFLNFITWVKKDGFAN- 106

Query: 141 RGRRFQNAHETLIWAS-----------------------PSPKAKGYTFNYDALKAANED 177
             +R+ +A E++++ S                          ++KG   N        + 
Sbjct: 107 AKKRYNHAQESILFYSMHKKNYTFNADEIRIAYESTERIKHAQSKGILKNNKRWFPNPKG 166

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                 W I      E+   K  +  HP+ KP+AL+ R++ +S+   D+ILD F GSG +
Sbjct: 167 KLCLDVWEIASQRHVEKENGKILKPKHPSIKPKALIERMIKASSHKNDLILDLFSGSGMT 226

Query: 238 GAVAKKLRRSFIGIEMKQDYI 258
             VAK L R+FIG E   +Y+
Sbjct: 227 SLVAKSLERNFIGCESHAEYV 247


>gi|210611258|ref|ZP_03288813.1| hypothetical protein CLONEX_01003 [Clostridium nexile DSM 1787]
 gi|210152022|gb|EEA83029.1| hypothetical protein CLONEX_01003 [Clostridium nexile DSM 1787]
          Length = 327

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 69/323 (21%), Positives = 115/323 (35%), Gaps = 91/323 (28%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I  G+ + VL+ LP +SV      PPY    +             V     + ++ + 
Sbjct: 16  DHIYTGDCLEVLKTLPDESVHCCITSPPYYALRDY-----------GVDGQIGREATPKE 64

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHN------------------------------ 110
           Y +         RRVL+ +GTLW+  S                                 
Sbjct: 65  YISRLTEVFTEVRRVLRSDGTLWLNISDTYAGKGNQGSYVDAKNPKGRNGQAVALNYKVE 124

Query: 111 ----------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
                      + +   L++  +++ NDI+W K NPMP     R    +E +   S    
Sbjct: 125 GCKPKDMIGIPWMLAFSLRDSGWYLRNDIIWMKENPMPESVKDRCARCYEHIFLFSK--- 181

Query: 161 AKGYTFNYDALKAA-----------------------------------NEDVQMRSDWL 185
           A+ Y F+Y A+                                       E   +  + +
Sbjct: 182 ARKYFFDYKAISEPIAPGTANRLKRGVKGSNKYGEPIPGQAKPQTINLCREHGAIPDEMI 241

Query: 186 IPICSG--SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
            P+ +      +     +  H    P  L+   L++      ++LDPF GSGT+G VAK+
Sbjct: 242 NPLRNKRDVWIINTVPFKGGHYAAYPPKLVETCLLAGCPKDGVVLDPFMGSGTTGMVAKQ 301

Query: 244 LRRSFIGIEMKQDYIDIATKRIA 266
           L R ++GIE+K +Y ++A  RI 
Sbjct: 302 LDRHYVGIELKPEYKELAEARIG 324


>gi|220931356|ref|YP_002508264.1| DNA methylase N-4/N-6 domain protein [Halothermothrix orenii H 168]
 gi|219992666|gb|ACL69269.1| DNA methylase N-4/N-6 domain protein [Halothermothrix orenii H 168]
          Length = 386

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/279 (25%), Positives = 119/279 (42%), Gaps = 31/279 (11%)

Query: 2   SQKNSLAINENQNSI-----FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ 56
            QK   A N N N I      ++ +KII G+S  +L+++P  S+DLI   PPYN  L+ +
Sbjct: 122 RQKYFYARNHNFNVINQPLPEKYINKIICGDSEQILKEIPDNSIDLILTSPPYNFGLDYK 181

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV-----IGSY-HN 110
             R  +               +++Y +   +    C R+LK  G + +        Y   
Sbjct: 182 DSRDGY--------------YWKSYFSKLFSIFKECIRILKYGGRIIINVQPLFSDYIPT 227

Query: 111 IFRIGTMLQNLNFWILNDIVWRKSNP----MPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
              I             +I+W K+N           +   + +    W      AKG   
Sbjct: 228 HHLISNFFIKNKMIWKGEILWEKNNYNCKYTAWGSWKSPSSPYLKYTWEFLEIFAKGSLK 287

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
                K  +   +   +W+    S +     K  +  HP   PE L+ R+L   +  GD+
Sbjct: 288 KKGDKKNIDITGEEFKEWVSARWSIAPVRNMKKYQ--HPAVFPEELVYRVLKLFSYKGDV 345

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           ILDPF G+GT+ AVA +L+R+++GI++  DY + A  R+
Sbjct: 346 ILDPFNGTGTTTAVAHRLKRNYLGIDISPDYCNTARGRL 384


>gi|50914490|ref|YP_060462.1| adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS10394]
 gi|40218562|gb|AAR83216.1| hypothetical protein [Streptococcus pyogenes]
 gi|50261607|gb|AAT72375.1| methylase [Streptococcus pyogenes]
 gi|50903564|gb|AAT87279.1| Chromosome partitioning protein [Streptococcus pyogenes MGAS10394]
          Length = 410

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 53/279 (18%), Positives = 111/279 (39%), Gaps = 40/279 (14%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K ++I G+S    + +  +  K  +L+  DPPYN+ +     +  +          D  S
Sbjct: 166 KHQVICGDSTLPETYITLMGDKKANLVLTDPPYNVNVEETAGKIKN----------DNMS 215

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             + Y  F  A  +   + ++ + +++V  +    +      ++  F++    +W+K++ 
Sbjct: 216 DSDFY-KFLFAMFVNVEQNMESDASIYVFHADTEGYNFRKAFKDAGFYLSGCCIWKKNSL 274

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +       +Q  HE  ++   +     +            D +  + W       S    
Sbjct: 275 V--LGRSPYQWQHEPCLFGWKNKGKHQWF----------SDRKQTTIWEYDRPKLS---- 318

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                K HPT KP  L++  + +S+  G ++LDPF GSG++    ++  R   GIE+ + 
Sbjct: 319 -----KEHPTMKPIQLMAYPIQNSSMRGTVVLDPFLGSGSTLIACEETGRICYGIELDEK 373

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
           ++D+  KR              +   R    + +  LVE
Sbjct: 374 FVDVIVKRY-----FEATGDQSIKVMRDGKEIKYADLVE 407


>gi|299141019|ref|ZP_07034157.1| methyltransferase [Prevotella oris C735]
 gi|298577985|gb|EFI49853.1| methyltransferase [Prevotella oris C735]
          Length = 340

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/288 (26%), Positives = 127/288 (44%), Gaps = 42/288 (14%)

Query: 5   NSLAINENQNSIFEWK-----DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR 59
             + +    NSI + K     D I+ G+ +  L  +P +  +LI  DPPYNL  +     
Sbjct: 40  ERMLLQSKVNSIEDLKSGLFDDVIVHGDLLDCLGLIPDEYFNLIVIDPPYNLDKD----- 94

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
            + +   A+  +         Y+ + R+W       L+P+G+L++ G +     +  +++
Sbjct: 95  FNGNRFSAMKSA--------GYEDYLRSWFGQVCDKLRPDGSLYMCGDWKCSASMQRVIE 146

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL------KA 173
                ++N I W++           ++N  E + +A  +P  K Y FN DA+      +A
Sbjct: 147 E-RLTVINRITWQREKGRGARMN--WKNGMEDIWFAVKNP--KDYYFNIDAVKVKRRVRA 201

Query: 174 ANEDVQMRSDWL--------IPICSGSE-----RLRNKDGEKLHPTQKPEALLSRILVSS 220
                    DW             S           +      HPTQKPE L +++L++S
Sbjct: 202 PYRIEGQPKDWEQSEDGKYRFTCPSNFWDDISVPFWSMPENTEHPTQKPEKLYAKLLLAS 261

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +K GD + DPF GSGT   VA+KL R F G+E+ ++Y   A KR+   
Sbjct: 262 SKSGDRVFDPFLGSGTLAVVARKLNRKFCGVEINEEYCLWAAKRLLQA 309


>gi|330012916|ref|ZP_08307529.1| DNA (cytosine-5-)-methyltransferase [Klebsiella sp. MS 92-3]
 gi|328533644|gb|EGF60352.1| DNA (cytosine-5-)-methyltransferase [Klebsiella sp. MS 92-3]
          Length = 258

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/260 (24%), Positives = 103/260 (39%), Gaps = 39/260 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I GN I V+   P ++VDLI  DPPY +       R    +   VTD W + ++ E Y
Sbjct: 28  RFILGNCIDVMRGFPDRAVDLIVTDPPYLVGFKD---RQGRQIAGDVTDEWLQPATLEMY 84

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                       RVLK +  +     ++ + R     +   F+ +  +V+ K+       
Sbjct: 85  ------------RVLKKDALMVSFYGWNRVDRFMAAWKAAGFYAVGQLVFTKNYASNRRN 132

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
                             +     + ++      +   +     +P            G 
Sbjct: 133 ---------------ARARRGFVDYCHEGAYVLAKGRPVPPLKPLPDVLPFPYT----GN 173

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
            LHPTQKP   L  ++ S + PG I+LDPF GSG++   A +  R +IGIEM   Y    
Sbjct: 174 TLHPTQKPVEALQPLIESFSAPGAIVLDPFAGSGSTCVAAYRAGRRYIGIEMLAQYHRAG 233

Query: 262 TKRIASVQ-----PLGNIEL 276
           T+R+A++      P  N E 
Sbjct: 234 TERLAAMHRAVNTPAANDEW 253


>gi|327198073|ref|YP_004306440.1| gp28 [Burkholderia phage KL3]
 gi|310657207|gb|ADP02321.1| gp28 [Burkholderia phage KL3]
          Length = 258

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/261 (24%), Positives = 107/261 (40%), Gaps = 32/261 (12%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDA----- 67
           I    +++ + +++++   LP +SVDL+F DPPY    L L+ +   P    +++     
Sbjct: 14  ITPMLNQLHRVDALALARTLPDQSVDLVFTDPPYASGGLHLSARTRAPSQKYINSDTKAV 73

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
            TD         A+  +  AWL  CRR +KP   L     +  +  +  ++Q     +  
Sbjct: 74  YTDFEGDNMDQRAWAFWCHAWLTECRRAMKPGALLVCFIDWRQLATLTDVVQAAGLTLRG 133

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
             VW K+      R   F    E ++WAS  P  +                   SD  +P
Sbjct: 134 IAVWDKTPGRTRPRRGGFAQQAEFIVWASRGPMNE-------------------SDVYLP 174

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
               +     K     H T+KP  L   ++      G ++ D F GSGT    A++    
Sbjct: 175 GVFPTRLALPKQ----HVTEKPIELARDVVR-LVPDGGVVCDLFAGSGTFLVAAREAGLQ 229

Query: 248 FIGIEMKQDYIDIATKRIASV 268
           ++G E  Q Y  IA+ R+A+V
Sbjct: 230 WVGCETSQAYHAIASTRLAAV 250


>gi|150958528|gb|ABR80555.1| hypothetical protein KPN_pKPN5p08175 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 258

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/260 (24%), Positives = 104/260 (40%), Gaps = 39/260 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I GN I V+   P ++VDLI  DPPY +       R    +   VTD W + ++ E Y
Sbjct: 28  RFILGNCIDVMRGFPDRAVDLIVTDPPYLVGFKD---RQGRQIAGDVTDEWLQPATLEMY 84

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                       RVLK +  +    S++ + R     +   F+ +  +V+ K+       
Sbjct: 85  ------------RVLKKDALMVSFYSWNRVDRFMAAWKAAGFYAVGQLVFTKNYASNR-- 130

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
                         +   +     + ++      +   +     +P            G 
Sbjct: 131 -------------RNARARRGFVDYCHEGAYVLAKGRPVPPLKPLPDVLPFPYT----GN 173

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
            LHPTQKP   L  ++ S + PG I+LDPF GSG++   A +  R +IGIEM   Y    
Sbjct: 174 TLHPTQKPVEALQPLIESFSAPGAIVLDPFAGSGSTCVAAYRAGRRYIGIEMLAQYHRAG 233

Query: 262 TKRIASVQ-----PLGNIEL 276
           T+R+ ++      P  N E 
Sbjct: 234 TERLDAMHRAVNTPAANDEW 253


>gi|303235466|ref|ZP_07322079.1| DNA (cytosine-5-)-methyltransferase [Prevotella disiens FB035-09AN]
 gi|302484333|gb|EFL47315.1| DNA (cytosine-5-)-methyltransferase [Prevotella disiens FB035-09AN]
          Length = 267

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 66/280 (23%), Positives = 112/280 (40%), Gaps = 52/280 (18%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           I E+ + II GN + V+ K P  ++DL+   PPY                       D  
Sbjct: 2   IDEYINTIINGNCVDVIRKFPDNAIDLVVTSPPY-----------------------DNL 38

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGS-------YHNIFRIGTMLQNLNFWILN 127
             ++ Y       +    RV+K +G + WV+             F+       + F + +
Sbjct: 39  RDYKGYTFPFDDIVEQLYRVVKEHGIVVWVVSDATIEGSETCTSFKQALAFVKMGFNLHD 98

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK-----------AKGYTFNYDALKAANE 176
            ++++K+NP+P    +R+ N  E +   S                 G   N    K  ++
Sbjct: 99  TMIFQKTNPVPQIYRKRYTNVFEYMFVFSKGSVLTHNAIKIPCLHAGLELNGTTYKNYSK 158

Query: 177 DVQMRSDWLIPIC------SGSERLRNKDGE----KLHPTQKPEALLSRILVSSTKPGDI 226
             Q R+    P+       +  E +  K       K HP   P  L +  + S T    I
Sbjct: 159 GEQTRTKQAKPVKQDKLKGNIWEYVVGKKAVDQEAKGHPAPFPFELAADHIKSWTDEDAI 218

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           +LDP  GSGT+   A +L+R FIGI++ Q+Y ++A +R+ 
Sbjct: 219 VLDPMCGSGTTCVAAYELKRKFIGIDISQEYCELAKRRLK 258


>gi|300837035|ref|YP_003754089.1| hypothetical protein pKP048_p096 [Klebsiella pneumoniae]
 gi|299474839|gb|ADJ18663.1| hypothetical protein [Klebsiella pneumoniae]
          Length = 233

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/260 (24%), Positives = 104/260 (40%), Gaps = 39/260 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I GN I V+   P ++VDLI  DPPY +       R    +   VTD W + ++ E Y
Sbjct: 3   RFILGNCIDVMRGFPDRAVDLIVTDPPYLVGFKD---RQGRQIAGDVTDEWLQPATLEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                       RVLK +  +     ++ + R     +   F+ +  +V+ K+       
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKAAGFYAVGQLVFTKNYASNR-- 105

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
                         +   +     + ++      +   +     +P            G 
Sbjct: 106 -------------RNARARRGFVDYCHEGAYVLAKGRPVPPLKPLPDVLPFPYT----GN 148

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
            LHPTQKP   L  ++ S + PG I+LDPF GSG++   A +  R +IGIEM   Y    
Sbjct: 149 TLHPTQKPVEALQPLIESFSAPGAIVLDPFAGSGSTCVAAYRAGRRYIGIEMLAQYHRAG 208

Query: 262 TKRIASVQ-----PLGNIEL 276
           T+R+A++      P  N E 
Sbjct: 209 TERLAAMHRAVNTPAANDEW 228


>gi|189500013|ref|YP_001959483.1| DNA binding domain-containing protein, excisionase family
           [Chlorobium phaeobacteroides BS1]
 gi|189495454|gb|ACE04002.1| DNA binding domain protein, excisionase family [Chlorobium
           phaeobacteroides BS1]
          Length = 365

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 76/310 (24%), Positives = 119/310 (38%), Gaps = 64/310 (20%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           +  ++  A+    +   E    +I G++  V+++LP  +   +   PPY    +      
Sbjct: 71  LHDQSVTAVEAPDSVAQENGPTVINGDTREVIKRLPENTFRCVITSPPYWGVRDY----- 125

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW-VIGSYHNI-------- 111
                  V D          Y           RRVLKP+GT W  IG+ +          
Sbjct: 126 ------GVADQIGAEPDLNDYIHSLVEVFSEVRRVLKPDGTFWLNIGNTYTSGGRKWRQA 179

Query: 112 ----------------------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
                                       + +    Q   +++ NDI+W K N  P     
Sbjct: 180 DAKNKGRAMSYRPPTPEGLKKKDLIGVAWMVAMACQQEGWYLRNDIIWHKPNCQPESVRD 239

Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAA----NEDVQMRSDWLIPICSGSERLRNKD 199
           R   AHE L   S    ++ Y FN DA++ A    N     R+ W I      E      
Sbjct: 240 RLTVAHEYLFMFSK---SERYFFNQDAIREAYSNGNGMKNKRTVWSINTEPCPE------ 290

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
               H    P  L+   +++ ++ GD +LDPF+G+GT G VA++L R   GIE+   Y+D
Sbjct: 291 ---AHFAVFPRNLVRPCVLAGSEEGDAVLDPFYGAGTVGMVAQELNRKCTGIEINDGYVD 347

Query: 260 IATKRIASVQ 269
           IA KR + +Q
Sbjct: 348 IARKRTSKIQ 357


>gi|229269517|ref|YP_001338785.2| putative methylase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 233

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/260 (24%), Positives = 104/260 (40%), Gaps = 39/260 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I GN I V+   P ++VDLI  DPPY +       R    +   VTD W + ++ E Y
Sbjct: 3   RFILGNCIDVMRGFPDRAVDLIVTDPPYLVGFKD---RQGRQIAGDVTDEWLQPATLEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                       RVLK +  +    S++ + R     +   F+ +  +V+ K+       
Sbjct: 60  ------------RVLKKDALMVSFYSWNRVDRFMAAWKAAGFYAVGQLVFTKNYASNR-- 105

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
                         +   +     + ++      +   +     +P            G 
Sbjct: 106 -------------RNARARRGFVDYCHEGAYVLAKGRPVPPLKPLPDVLPFPYT----GN 148

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
            LHPTQKP   L  ++ S + PG I+LDPF GSG++   A +  R +IGIEM   Y    
Sbjct: 149 TLHPTQKPVEALQPLIESFSAPGAIVLDPFAGSGSTCVAAYRAGRRYIGIEMLAQYHRAG 208

Query: 262 TKRIASVQ-----PLGNIEL 276
           T+R+ ++      P  N E 
Sbjct: 209 TERLDAMHRAVNTPAANDEW 228


>gi|328912202|gb|AEB63798.1| DNA modification methylase [Bacillus amyloliquefaciens LL3]
          Length = 278

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 66/286 (23%), Positives = 110/286 (38%), Gaps = 51/286 (17%)

Query: 16  IFEWK-DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           I E K ++I K + +  L++L  +S+DLI   PPY  +  G+      S           
Sbjct: 3   INELKFNEIYKIDCLDGLKELKNESIDLIVTSPPYADRREGEYKSIKTS----------- 51

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN--------IFRIGTMLQNLNFWIL 126
                 Y  +         RVLKP+G+ ++    H         ++ +   L+    W  
Sbjct: 52  -----EYVNWFIPIAKELYRVLKPSGSFFINIKSHCSKGERELYVYELVIALKKELGWRF 106

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASP------SPKAKGYTFNYDALKAANED--- 177
            D      N +P     RF+N  E +   +       +P A G     ++LK AN     
Sbjct: 107 VDEFTWTKNGVPGRFKGRFKNGFEPIFHFAKSSEIVFNPYAVGVPMKEESLKRANRKATG 166

Query: 178 -------------VQMRSDWLIPICSGSERLRNKDGE----KLHPTQKPEALLSRILVSS 220
                         +   +  + + S    +  K  +      HP   P  L    + + 
Sbjct: 167 LTKNGSGFAGMRRNETMVNRSLALPSNHLHIPQKSNQYTLQSKHPAVFPVELPEFFIKAF 226

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           T  G ++LDPF GSGT+   ++ L R +IG E +  YI+IA +R+ 
Sbjct: 227 TNEGQVVLDPFMGSGTTAIASEMLGRKWIGFETEAKYIEIANERLR 272


>gi|257439315|ref|ZP_05615070.1| DNA (cytosine-5-)-methyltransferase [Faecalibacterium prausnitzii
           A2-165]
 gi|257198190|gb|EEU96474.1| DNA (cytosine-5-)-methyltransferase [Faecalibacterium prausnitzii
           A2-165]
          Length = 296

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/303 (24%), Positives = 111/303 (36%), Gaps = 64/303 (21%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I++G+++  L KLP K   +    PPY    N + Y           D     SS E Y 
Sbjct: 2   ILQGDALEELRKLPDKCCSVCVTSPPY---YNARDY--------GAADQLGTESSPEEYT 50

Query: 83  AFTRAWLLACRRVLKPNGTLW-VIGSYH----------------NIFRIGTMLQNLNFWI 125
                      RVLK +GTLW  IG  +                  + +   L++  +++
Sbjct: 51  RKLVEAFREVARVLKDDGTLWLNIGDSYARHIEDGGIKRKDLIGIPWLLALALRSDGWYL 110

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLI---------------------WASPSPKAKG- 163
             DI+W K N MP     R   +HE +                      +    P  K  
Sbjct: 111 RADIIWNKPNVMPESAKDRPARSHEYVFLLSKAAAYYYDAEAVKELAVGYDPKKPGRKRG 170

Query: 164 ----------YTFNYDALKAANEDVQMRSDWLIPICSGSER----LRNKDGEKLHPTQKP 209
                     YT +      A  D              + R    +  +  +  H +  P
Sbjct: 171 NAKTFRGGTAYTHDQAKANNAEVDRGSHGLQRNETGKRNRRDVWTIATRPYKGAHLSTFP 230

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           E L    +++ +KPGD +LDPF GSGT+GA A K  R++IGIE+  D   I  +R+    
Sbjct: 231 EELAKICILAGSKPGDTVLDPFSGSGTTGAAALKEGRNYIGIEINPDTCKIQEQRLTEAA 290

Query: 270 PLG 272
             G
Sbjct: 291 QEG 293


>gi|317476165|ref|ZP_07935417.1| DNA methylase [Bacteroides eggerthii 1_2_48FAA]
 gi|316907803|gb|EFV29505.1| DNA methylase [Bacteroides eggerthii 1_2_48FAA]
          Length = 280

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 61/266 (22%), Positives = 97/266 (36%), Gaps = 38/266 (14%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            D+I   + +  ++++   SVD I AD PY +     L R + S       +WD+     
Sbjct: 4   TDRIYLMDCMEGMKQIADGSVDAIIADLPYGV-----LNRSNPSA------NWDRQIP-- 50

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                  A     RR+ KP+  + + G    +F    ML     W  N +  +       
Sbjct: 51  -----LTALWEQYRRITKPDSPIILFG--QGLFSAWLMLSQPRLWRYNLVWQKDRVTGHL 103

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS----------------- 182
              R     HE ++                  +  N   +                    
Sbjct: 104 NAKRMPLRQHEDILVFYKKQPVYHPQMTPCPSERRNHGRRKTEGFTNRCYGTMKLSPVRI 163

Query: 183 -DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
            D   P         +K G   HPTQKP AL+  ++ + T  GD++LD   GSGT+   A
Sbjct: 164 ADDKYPTSVIFMPKEHKKGAFYHPTQKPVALMEYLIRTYTDEGDVVLDNCIGSGTTAVAA 223

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIAS 267
            +  R +IG E++Q Y +I  +RI  
Sbjct: 224 IRTGRHYIGFEIEQAYCEITERRIQE 249


>gi|331668083|ref|ZP_08368935.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA271]
 gi|331064597|gb|EGI36504.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA271]
          Length = 227

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 104/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVIARIPDNAIDFILTDPPYLVGFRD---RSGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFVAAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+++ Q
Sbjct: 196 QYHRAGQQRLSAEQ 209


>gi|290957744|ref|YP_003488926.1| DNA methylase [Streptomyces scabiei 87.22]
 gi|260647270|emb|CBG70375.1| putative DNA methylase [Streptomyces scabiei 87.22]
          Length = 251

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/255 (25%), Positives = 96/255 (37%), Gaps = 31/255 (12%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT--DSWDKFSSF-- 78
           + +G+++SVL  LP   VD +  DPPYN        R   S     T  DS +  + F  
Sbjct: 5   LHQGDALSVLAGLPDGCVDSVITDPPYNSGGRTAKERTTRSAKQKYTSADSKNDLADFTG 64

Query: 79  -----EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                 +Y  +    +    R+ K  GT  +   +  +      +Q   +     + W K
Sbjct: 65  ENMDQRSYSFWLTQIMTEAHRLTKSGGTALLFTDWRQLPTTTDAIQAAGWLWRGVLAWHK 124

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
               P  RGR  QN  E ++WAS  P        Y     +                   
Sbjct: 125 PQARPQ-RGRFTQNC-EFIVWASKGPIDGSRNPVYLPGMYSASQP--------------- 167

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
                  ++ H TQKP  ++ R LV  +  G  +LD   GSG++G  A    R FIG+E 
Sbjct: 168 ----SGAKRQHITQKPVEVM-RELVKISPEGGTVLDFCAGSGSTGVAALLEGRDFIGVEK 222

Query: 254 KQDYIDIATKRIASV 268
            + Y  IA  R+   
Sbjct: 223 TEHYASIAEARLTET 237


>gi|282881331|ref|ZP_06290011.1| DNA (cytosine-5-)-methyltransferase [Prevotella timonensis CRIS
           5C-B1]
 gi|281304807|gb|EFA96887.1| DNA (cytosine-5-)-methyltransferase [Prevotella timonensis CRIS
           5C-B1]
          Length = 299

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/302 (22%), Positives = 119/302 (39%), Gaps = 71/302 (23%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFE 79
           +  I G+ I  ++ +P  S+DL+ ADPPY                  V   WD ++ + +
Sbjct: 4   NCCILGDCIEKMKSIPDGSIDLVIADPPY---------------WKVVGQEWDYQWRTEK 48

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS----N 135
            Y  ++  W+    R+L+  GT +  G +  +  +   L N+   +   I+  K     +
Sbjct: 49  DYIEWSLRWIREVARILRIGGTFYCFGYFRTLTLLVPYLDNIGLELRQQIILDKGIRAVS 108

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD-----------W 184
                + + F N  E++++     K     F     +A N   +  ++           W
Sbjct: 109 GRATKKYKMFPNVTESILFIIKDNKRFIKPFLKSRQQALNLKAKEINEALGVKSNGGGMW 168

Query: 185 LIPICSG------SERLRNK----------------------------------DGEKLH 204
            I           +E L NK                                    ++ H
Sbjct: 169 SIYTGKNVCEQFPTEELWNKLSKILQFDLPYNKLAQTFNPQMGYTDVWTDIDFYKEKRYH 228

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PTQKP  L+ R++ +S+  GDI+LDPFFG G++      L+R++I IE+ + Y + A KR
Sbjct: 229 PTQKPIKLIERLIAASSNEGDIVLDPFFGCGSTQLSCIDLKRNYIAIELDKRYYETALKR 288

Query: 265 IA 266
           I 
Sbjct: 289 IE 290


>gi|116671332|ref|YP_832265.1| site-specific DNA-methyltransferase (adenine-specific)
           [Arthrobacter sp. FB24]
 gi|116611441|gb|ABK04165.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Arthrobacter sp. FB24]
          Length = 290

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 30/277 (10%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL---------------NGQLYRPDHSLV 65
           + ++  ++   L  LP  +  LI+ DPP+N                   G          
Sbjct: 12  NLVVHADNAEYLPTLPDGAFTLIYVDPPFNTGRAQSRQQTTMVRNADGGGDRVGFKGRSY 71

Query: 66  DAVTDSWDKFSS-FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--N 122
           D +  +  K+   F  Y +F    L+   R+L  +GTL++   Y  +     ML  +   
Sbjct: 72  DTIKGALHKYDDAFSDYWSFLEPRLVEAWRLLADDGTLYLHLDYREVHYAKVMLDAIFGR 131

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN--------YDALKAA 174
              LN+I+W            R+   H+ ++    +P    Y FN        Y A    
Sbjct: 132 ECFLNEIIWAYDYGA--RAKFRWPTKHDNILVYVKNPA--KYHFNSAEVDREPYMAPGLV 187

Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
             + +        +   +        +  +PTQKPE L+ R++ +S++PGD  LD F GS
Sbjct: 188 TPEKRELGKLPTDVWWHTIVSPTGKEKTGYPTQKPEGLIRRVVAASSRPGDWCLDFFAGS 247

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           GT GAVA KL R F+ ++  Q  I++ +KR++++   
Sbjct: 248 GTLGAVAAKLDRKFVCVDQNQPAIEVMSKRLSALASF 284


>gi|16081887|ref|NP_394290.1| hypothetical protein Ta0829 [Thermoplasma acidophilum DSM 1728]
 gi|10640106|emb|CAC11958.1| hypothetical protein [Thermoplasma acidophilum]
          Length = 309

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/282 (23%), Positives = 114/282 (40%), Gaps = 42/282 (14%)

Query: 4   KNSLAINENQNSIFEW-KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
           K    I+  +N + E   D+I    S   ++++P  S+ L+   PPYN+   G+LY    
Sbjct: 39  KAENNIDFTENKVPEIALDRIFCK-SSEKMDEIPDNSIHLMVTSPPYNV---GKLY---- 90

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT----LWVIGSYHNIFRIGTML 118
                     DK  S   Y  F  +      RVL P G     +  +G    I     ++
Sbjct: 91  ----------DKDMSLAEYRDFLSSVWKEVYRVLVPGGRACINIANLGRKPYIPLHAFII 140

Query: 119 QN---LNFWILNDIVWRKSNPMPNFRGRRF---------QNAHETLIWASPSPKAKGYTF 166
           ++   L F +  +++W K     +               +++HE ++  S     +G   
Sbjct: 141 EDMIKLGFLMRGEVIWDKGATASSSVAWGTYLSAKNPVLRDSHEYILIFSKQTFTRGIKE 200

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
           N  +  +  E +    ++   + S       + G   HP   P  L  R +   T   ++
Sbjct: 201 NMRSTMSKEEFI----EYTKSVWSFGAESATRIG---HPAPFPVELPKRCIKLYTFEEEV 253

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +LDPF GSGT+   A  L R F+G ++  +Y+ +A KRI  +
Sbjct: 254 VLDPFIGSGTTAISALMLNRHFVGYDVDPEYVKLANKRINMI 295


>gi|21225176|ref|NP_630955.1| DNA methylase [Streptomyces coelicolor A3(2)]
 gi|6941940|emb|CAB72390.1| putative DNA methylase [Streptomyces coelicolor A3(2)]
          Length = 251

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 62/255 (24%), Positives = 93/255 (36%), Gaps = 31/255 (12%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT---------DSWD 73
           + +G++++VL  LP   VD +  DPPYN        R   S     T         D   
Sbjct: 5   LHQGDALAVLSGLPDGCVDSVITDPPYNSGGRTAKERTSRSAKQKYTSADVKNDLADFTG 64

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           +     +Y  +    +    R+ K  GT  +   +  +      +Q   +     + W K
Sbjct: 65  ENMDQRSYGFWLTQIMTEAHRLTKTGGTALLFTDWRQLPTTTDAIQAAGWLWRGVLAWHK 124

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
               P     RF    E ++WAS  P        Y               +     SGS+
Sbjct: 125 PQARPQ--KGRFTQNCEFIVWASKGPIDGSRNPVYLPGM-----------YSASQPSGSQ 171

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           R         H TQKP  ++ R LV  +  G  +LD   GSG++G  A    R FIG+E 
Sbjct: 172 RQ--------HITQKPVEVM-RELVKISPEGGTVLDFCAGSGSTGVAALLEGRDFIGVEK 222

Query: 254 KQDYIDIATKRIASV 268
            + Y  IA  R+   
Sbjct: 223 TEHYASIAADRLTET 237


>gi|325996643|gb|ADZ52048.1| type IIS restriction enzyme M1 protein [Helicobacter pylori 2018]
 gi|325998232|gb|ADZ50440.1| type IIS restriction enzyme M1 protein [Helicobacter pylori 2017]
          Length = 258

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/270 (26%), Positives = 113/270 (41%), Gaps = 40/270 (14%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            +KI   +  + L+KL  KSVDL   DPPYNL++                 SWD F + E
Sbjct: 1   MNKIYIEDVFTFLDKLEDKSVDLAIIDPPYNLKIA----------------SWDSFKNDE 44

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            +  F+ AW+      +K  G+ ++  +  N       L +     LN I W K +   N
Sbjct: 45  EFLTFSYAWIDKVLPKIKDTGSFYIFNTPFNCALFLAYLCHKKAHFLNFITWVKKDGFAN 104

Query: 140 FRGRRFQNAHETLIWAS-----------------------PSPKAKGYTFNYDALKAANE 176
              +R+ +A E++++ S                          ++KG   N        +
Sbjct: 105 -AKKRYNHAQESILFYSMHKKNYTFNADEVRTAYESTERIKHAQSKGILKNNKRWFPNPK 163

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
                  W I      E+   K  +  HP+ KP+AL+ R++ +S+   D+ILD F GSG 
Sbjct: 164 GKLCLDVWEITSQRHVEKENGKILKPKHPSIKPKALIERMIKASSNENDLILDLFSGSGM 223

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
              VAK L R+FIG E    Y+  + + + 
Sbjct: 224 ISLVAKSLGRNFIGCETHAGYVHESLEMLK 253


>gi|227544628|ref|ZP_03974677.1| ParB family nuclease domain and DNA-modification methylase domain
           protein [Lactobacillus reuteri CF48-3A]
 gi|300909456|ref|ZP_07126917.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus reuteri SD2112]
 gi|227185394|gb|EEI65465.1| ParB family nuclease domain and DNA-modification methylase domain
           protein [Lactobacillus reuteri CF48-3A]
 gi|300893321|gb|EFK86680.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus reuteri SD2112]
          Length = 408

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 102/278 (36%), Gaps = 41/278 (14%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K  ++ G++    S  + L    V+L+  DPPYN+    +  +  +   D          
Sbjct: 164 KHTLLCGDATKKESFHKLLSDNKVNLVLTDPPYNVDYQSKAGKIKNDHQDN--------- 214

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             + +  F  A        +  + +++V  +           Q+  F++    +W+K + 
Sbjct: 215 --DKFYKFLLAAFQNMNTAMANDASIYVFHADTEGLNFRRAFQDAGFYLSGCCIWKKQSL 272

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +       +Q  HE +++         +              +  + W       S    
Sbjct: 273 V--LGRSPYQWQHEPVLYGWKHDGKHEWY----------TGRKESTIWEFDRPKQS---- 316

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                K HPT KP  LL+  +++ST     +LDPF GSG++    ++  R    +E+   
Sbjct: 317 -----KEHPTMKPIPLLAYPIMNSTMSNCTVLDPFGGSGSTLIACEQTNRICYMMELDPK 371

Query: 257 YIDIATKR-IASVQPLGNIELTVLTGKRTEPRVAFNLL 293
           Y D+   R I  V    +I +     +R    + ++ L
Sbjct: 372 YCDVIVNRYIKQVDSDQDISV-----ERDGHIIPYSNL 404


>gi|261837492|gb|ACX97258.1| type IIS m6A methylase [Helicobacter pylori 51]
          Length = 247

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/255 (27%), Positives = 108/255 (42%), Gaps = 40/255 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   +  + L+KL  KSVDL   DPPYNL++                 SWD F + E 
Sbjct: 4   NKIYIEDVFTFLDKLEDKSVDLAIIDPPYNLKIA----------------SWDSFKNDEE 47

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           +  F+ AW+      LK  G+ ++  +  N       L +     LN I W K +   N 
Sbjct: 48  FLTFSYAWIDKMLPKLKDTGSFYIFNTPFNCALFLAYLCHKKVHFLNFITWVKKDGFAN- 106

Query: 141 RGRRFQNAHETLIWAS-----------------------PSPKAKGYTFNYDALKAANED 177
             +R+ +A E++++ S                          + KG   N        + 
Sbjct: 107 AKKRYNHAQESILFYSMHKKNYTFNADEIRTTYESTERIKHAQNKGILKNNKRWFPNPKG 166

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                 W I      E+   K  +  HP+ KP+AL+ R++ +S+   D+ILD F GSG +
Sbjct: 167 KLCLDVWEITSQRHVEKENGKILKPKHPSIKPKALIERMIKASSHKNDLILDLFSGSGMT 226

Query: 238 GAVAKKLRRSFIGIE 252
             VAK L R+FIG E
Sbjct: 227 SLVAKSLGRNFIGCE 241


>gi|116006850|ref|YP_788033.1| putative methylase [Escherichia coli]
 gi|115500705|dbj|BAF33936.1| putative DNA modification methylase [Escherichia coli]
          Length = 227

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 101/249 (40%), Gaps = 43/249 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RSGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     +H I R     ++  F +   +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWHRIDRFMAAWKHAGFSVAGHLVFTKNYTSKSAY 107

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
              R + A+                          +    R    +P   G +      G
Sbjct: 108 VAYRHECAY-----------------------ILAKGSPARPRNPLPDVLGWKY----SG 140

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            + HPT+K    L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ + Y   
Sbjct: 141 NRHHPTEKSVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRA 200

Query: 261 ATKRIASVQ 269
             +R+A+VQ
Sbjct: 201 GQQRLAAVQ 209


>gi|125974233|ref|YP_001038143.1| DNA methylase N-4/N-6 [Clostridium thermocellum ATCC 27405]
 gi|125714458|gb|ABN52950.1| DNA methylase N-4/N-6 [Clostridium thermocellum ATCC 27405]
          Length = 411

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/283 (19%), Positives = 109/283 (38%), Gaps = 43/283 (15%)

Query: 20  KDKIIKGNSI-----SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           + ++I G+S        L  +  K  +L+  DPPYN+    +  +  +   D + D    
Sbjct: 165 RHRLICGDSTKAETYEAL--MDGKKANLVVTDPPYNVAYEAKAGKIQN---DNLKD---- 215

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
               E +  F           ++ + +++V  +           + + F++    +W K 
Sbjct: 216 ----EEFYNFLYKAFTNMYDAMEKDASIYVFHADTEGLNFRKAFKAVGFYLSGVCIWAKQ 271

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           + +       +Q  HE +++         +            D +  + W     S +  
Sbjct: 272 SLV--LGRSPYQWKHEPVLFGWKKEGRHNWY----------SDRKQSTIWSFDRPSKN-- 317

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                   LHPT KP AL +  + +S+    I+LDPF GSG++    ++  R    IE+ 
Sbjct: 318 -------ALHPTMKPVALCAYPIQNSSMSNCIVLDPFGGSGSTLIACEQTNRICYTIELD 370

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERG 297
           + Y D+  KR   ++ +G  E   L   R   ++ +  + + G
Sbjct: 371 EKYADVIVKRY--IEQVGTDEEVFLV--RDGVKIKYADIKKEG 409


>gi|154150012|ref|YP_001403630.1| DNA methylase N-4/N-6 domain-containing protein [Candidatus
           Methanoregula boonei 6A8]
 gi|153998564|gb|ABS54987.1| DNA methylase N-4/N-6 domain protein [Methanoregula boonei 6A8]
          Length = 256

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 104/257 (40%), Gaps = 29/257 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +II G+  S    +P + +DL+   PPYN+ +    +              D   +++ Y
Sbjct: 13  EIINGDIFST-RAIPTQGIDLVVTSPPYNVDIRYHSH--------------DDGLTYDEY 57

Query: 82  DAFTRAWLLACRRVLKPNGTLWVI--------GSYHNIFRIGTMLQNLNFWILNDIVWRK 133
            AF++ W+  C   LKP+G   +         G       +  + +   F   + I+W +
Sbjct: 58  LAFSKRWMKRCFGWLKPDGRFCLNIPLDKNKGGQQSVGADLTAIAKECGFAYHSTIIWNE 117

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR---SDWLIPICS 190
            N         + +A    + A        Y  ++     + +    R    +W   + +
Sbjct: 118 GNISRRTAWGSWASASAPYVIAPVELIVVLYKDSWKKTSGSRQSDITREEFMEWTNGLWT 177

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
            +   + + G   HP   P  L  R +   +  GD +LDPF GSG++   A +  R  IG
Sbjct: 178 FNGERKTRIG---HPAPFPVELPLRCMKLFSFVGDTVLDPFMGSGSTLVAASRCDRKAIG 234

Query: 251 IEMKQDYIDIATKRIAS 267
           +E+   Y ++A KRIA+
Sbjct: 235 VEIDAHYCELAAKRIAA 251


>gi|332654727|ref|ZP_08420470.1| DNA (cytosine-5-)-methyltransferase [Ruminococcaceae bacterium D16]
 gi|332516691|gb|EGJ46297.1| DNA (cytosine-5-)-methyltransferase [Ruminococcaceae bacterium D16]
          Length = 350

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/323 (21%), Positives = 113/323 (34%), Gaps = 91/323 (28%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I  G+ + +L+ LP  SV      PPY    +             +     + ++ + 
Sbjct: 39  DIIHTGDCLEILKALPDDSVHCCVTSPPYYALRDY-----------GMEAQIGRETTPKE 87

Query: 81  YDAFTRAWLLACRRVLKPNGTLW--------------VIGSYHNI--------------- 111
           Y +         RRVL+P+GTLW                    N                
Sbjct: 88  YISRLTEVFTEVRRVLRPDGTLWLNISDTYAGKGNQGDFIDPKNPNGRNGQAVALNNKVE 147

Query: 112 -----------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
                      + +   L++  +++ NDI+W K NPMP     R    +E +   S    
Sbjct: 148 GCKPKDMIGIPWMLAFALRDTGWYLRNDIIWMKDNPMPESVKDRLSRCYEHIFLFSK--- 204

Query: 161 AKGYTFNYDA-----------------------------LKAANEDVQMRSDWLIPICSG 191
           +K Y F+Y A                                     + R    I  C  
Sbjct: 205 SKKYFFDYKAISEPIAPATAERLKRGMKGGNKYGKPVPGQPQPQSINRPREHGEIKDCDI 264

Query: 192 SERLRNKDGEKL--------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           +     +D  K+        H    P  L+   L++    G I+LDPF GSGT+G VA +
Sbjct: 265 NPLRNKRDVWKINTVPFKGGHYAAYPPKLVETCLLAGCPEGGIVLDPFMGSGTTGMVASQ 324

Query: 244 LRRSFIGIEMKQDYIDIATKRIA 266
           + R F+G+E+  +Y ++A KRI 
Sbjct: 325 MGRHFVGVELNPEYTELAYKRIG 347


>gi|268507185|ref|YP_003293984.1| DNA modification methylase [Escherichia coli ETEC H10407]
 gi|266265506|dbj|BAI49210.1| DNA modification methylase [Escherichia coli ETEC H10407]
 gi|309705571|emb|CBJ04416.1| putative site-specific DNA methyl transferase [Escherichia coli
           ETEC H10407]
          Length = 227

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 103/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RQGRTIAGDKTDDWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R  +  +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPRLPQKPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+ P   L  ++ S T P  I+LDPF GSG++   A +    +IGIE+ +
Sbjct: 139 ---SGNRHHPTENPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGCRYIGIELLE 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 196 QYHRAGQQRLAAVQ 209


>gi|329940535|ref|ZP_08289816.1| DNA methylase [Streptomyces griseoaurantiacus M045]
 gi|329300596|gb|EGG44493.1| DNA methylase [Streptomyces griseoaurantiacus M045]
          Length = 251

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 59/255 (23%), Positives = 93/255 (36%), Gaps = 31/255 (12%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT--DSWDKFSSF-- 78
           + +G++++VL  LP   VD +  DPPYN        R   S     T  D+ +  + F  
Sbjct: 5   LHQGDALAVLSGLPDGCVDSVITDPPYNSGGRTAKERTTRSAKQKYTSADAKNDLADFTG 64

Query: 79  -----EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                 +Y  +    +    R+ K  GT  +   +  +      +Q   +     + W K
Sbjct: 65  ENMDQRSYAFWLTQIMTEAHRLTKTGGTALLFTDWRQLPTTTDAIQAAGWLWRGVLAWHK 124

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
               P     RF    E ++WAS  P        Y     +                   
Sbjct: 125 PQARPQ--KGRFTQNCEFIVWASKGPIDGSRNPVYLPGMYSASQP--------------- 167

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
                  ++ H TQKP  ++ R LV  +  G  +LD   GSG++G  A    R FIG+E 
Sbjct: 168 ----SGAQRRHITQKPVEVM-RELVKISPEGGTVLDFCAGSGSTGVAALLEGRDFIGVEK 222

Query: 254 KQDYIDIATKRIASV 268
            + Y  IA  R+   
Sbjct: 223 TEHYASIAADRLTET 237


>gi|2995646|gb|AAC08984.1| DNA modification methyltransferase M.XbaI [Xanthomonas campestris]
          Length = 423

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/273 (24%), Positives = 106/273 (38%), Gaps = 30/273 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + ++G+ +  L +L     DL++ DPP+           D     +  D+W        Y
Sbjct: 9   RAVQGDCLVELARLEECEADLVYLDPPFFTNRRHSSISRDRINAFSFDDAWGDLG---EY 65

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F    L    RVLK +G+++V       F + T+L N+            S    +  
Sbjct: 66  ADFMEQRLREAHRVLKHSGSIFVHCDTSANFLLRTLLNNIFGASQFRSEIIWSYKRWSNS 125

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ-------------MRSDWLIPI 188
            R    AH+T+++ S S   K    +    +  N D                 +D L   
Sbjct: 126 ARNLLPAHQTILFYSKSDAYKFNVLHGSYSETTNVDQILQLRQRDADGVSKYATDKLGNT 185

Query: 189 CSGSER--------------LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
             G+E+                       +PTQKP  LL RI+  ST PGD I+DPF GS
Sbjct: 186 IYGTEKNGVPLNDVWAIPFLNPKAKERTGYPTQKPILLLERIIEISTDPGDFIVDPFCGS 245

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           GT+   A  L R   GI+  ++ + +A +RI  
Sbjct: 246 GTTLVAAAILGRRAFGIDTSREAVALANRRIEE 278


>gi|307701460|ref|ZP_07638479.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
 gi|307613370|gb|EFN92620.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
          Length = 348

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 74/308 (24%), Positives = 116/308 (37%), Gaps = 64/308 (20%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL--------------------------- 53
           + +I G+++ VL  L  ++  LI+ DPP+N                              
Sbjct: 34  NTVIHGDNLPVLRGLADETFQLIYIDPPFNTGKVQSRVTMRTRQVREPGAAGGAESADSD 93

Query: 54  -----NGQLYRPD----------HSLVDAVTDSWDKFSS--------FEAYDAFTRAWLL 90
                 G   + D           S V     S++            F  Y  F    L 
Sbjct: 94  GSPASRGASRKSDAAPSTAGSNSGSRVGFKGQSYETIRGQVTSYDDEFADYWGFLAPRLE 153

Query: 91  ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMPNFRGRRFQNA 148
              RVLKP+GTL++   Y  +     +L  L      LN+I+W           RR+   
Sbjct: 154 EAWRVLKPSGTLYLHLDYREVHYAKVLLDALFGRECFLNEIIWAYDYGART--KRRWPAK 211

Query: 149 HETLIWASPSPKAKGYTFN--------YDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           H+ ++     P  K Y F+        Y A      +   R      +   +        
Sbjct: 212 HDNILVYVKDP--KQYYFDSESVDREPYMAPGLVTAEKAARGKLPTDVWWHTIVSPTGKE 269

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +  + TQKPE +L RI+ +S++PGD +LD F GSGT+GAVA K+ R F+ ++     I +
Sbjct: 270 KTGYATQKPEGILRRIVAASSRPGDWVLDFFAGSGTTGAVAGKMGRHFVLVDENPQAIAV 329

Query: 261 ATKRIASV 268
              R A+ 
Sbjct: 330 MRARFAAA 337


>gi|62422064|gb|AAX82614.1| putative adenine-specific methyltransferase [Lactobacillus reuteri]
          Length = 319

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 79/291 (27%), Positives = 126/291 (43%), Gaps = 43/291 (14%)

Query: 7   LAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
             I +  +++    +KII G+S  V+ KL    VDL   DPPYNL               
Sbjct: 22  NQIIQPTDNLQTISNKIINGDSFKVMTKLSPHQVDLALIDPPYNLNKQYDGLSFKK---- 77

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                     S   Y A+T+ W+   + +LK N +++V   +     +  +L+  NF I 
Sbjct: 78  ---------MSTSQYQAYTQKWIDLLKPLLKENASIYVFSDWATSMALAPILEK-NFTIQ 127

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN------------------- 167
           N I W++     + +   ++N  E + + + +P    YTFN                   
Sbjct: 128 NRITWQREKGRGSLKN--WKNGMEDIWFLTANPS--DYTFNVDQVKQRRQVVAPYRQDGV 183

Query: 168 ---YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
              + A K  N    M S++   I   S    +      HPTQKPE LL++I+++S+ P 
Sbjct: 184 AKDWQATKNGNFRDTMPSNFWDDI---SIPYWSMPENTGHPTQKPEKLLAKIILASSNPN 240

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           D I DPF GSG+S   A KL R ++GIE    Y      R+  ++   +I+
Sbjct: 241 DFIFDPFAGSGSSLVTAAKLNRRYLGIEQSLLYCAWGQYRLNQIKDDPSIQ 291


>gi|150021358|ref|YP_001306712.1| DNA methylase N-4/N-6 domain-containing protein [Thermosipho
           melanesiensis BI429]
 gi|149793879|gb|ABR31327.1| DNA methylase N-4/N-6 domain protein [Thermosipho melanesiensis
           BI429]
          Length = 255

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 62/255 (24%), Positives = 109/255 (42%), Gaps = 27/255 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+I  + +    ++P  S+DLI   PPYN+ +      P +S  D +T        ++ Y
Sbjct: 11  KLINEDFLKT--RIPENSIDLIVTSPPYNVGI------PYNSHNDKIT--------YKDY 54

Query: 82  DAFTRAWLLACRRVLKPNGTLWVI--------GSYHNIFRIGTMLQNLNFWILNDIVWRK 133
             +T  WL    ++ KP+G + +         G       I  + + + +   + I+W +
Sbjct: 55  LIWTEKWLTKAFQLSKPDGRMCLNIPLDKNKGGQQSVYADIVYLAKKIGWKYHSTIIWNE 114

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
            N         + +A    + A        Y   +   K    D+    +  I   +G  
Sbjct: 115 GNISRRTAWGSWLSASAPYVIAPVETIVILYKETWKKQKRGKSDILR--EEFIEWTNGLW 172

Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
               +  +K+ HP   P  L  R +   +  GD+ILDPF GSGT+   A +L+R  IG+E
Sbjct: 173 TFSGESKKKIGHPAPFPFELPKRCIKLFSYVGDVILDPFLGSGTTAIAAFRLKRKVIGVE 232

Query: 253 MKQDYIDIATKRIAS 267
           + + Y ++A KRI+ 
Sbjct: 233 IDKKYFELAIKRISK 247


>gi|324120124|ref|YP_004249885.1| hypothetical protein pc15-k-034 [Klebsiella pneumoniae]
 gi|323388252|gb|ADX60401.1| hypothetical protein pc15-k-034 [Klebsiella pneumoniae]
          Length = 258

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 64/260 (24%), Positives = 104/260 (40%), Gaps = 39/260 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I GN I V+   P ++VDLI  DPPY +       R    +   VTD W + ++ E Y
Sbjct: 28  RFILGNCIDVMRGFPDRAVDLIVTDPPYVVGFKD---RQGRQIAGDVTDEWLQPATLEMY 84

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                       RVLK +  +     ++ + R     +   F+ +  +V+ K+       
Sbjct: 85  ------------RVLKKDALMVSFYGWNRVDRFMAAWKAAGFYAVGQLVFTKNYASNR-- 130

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
                         +   +     + ++      +   +     +P            G 
Sbjct: 131 -------------RNARARRGFVDYCHEGAYVLAKGRPVPPLKPLPDVLPFPYT----GN 173

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
            LHPTQKP   L  ++ S + PG I+LDPF GSG++   A +  R +IGIEM   Y    
Sbjct: 174 ALHPTQKPVEALQPLIESFSAPGAIVLDPFAGSGSTCVAAYRAGRRYIGIEMLAQYHRAG 233

Query: 262 TKRIASVQ-----PLGNIEL 276
           T+R+A++      P  N E 
Sbjct: 234 TERLAAMHRAVNTPASNDEW 253


>gi|227544742|ref|ZP_03974791.1| adenine-specific methyltransferase [Lactobacillus reuteri CF48-3A]
 gi|300909012|ref|ZP_07126475.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus reuteri SD2112]
 gi|227185282|gb|EEI65353.1| adenine-specific methyltransferase [Lactobacillus reuteri CF48-3A]
 gi|300894419|gb|EFK87777.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus reuteri SD2112]
          Length = 319

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 79/291 (27%), Positives = 126/291 (43%), Gaps = 43/291 (14%)

Query: 7   LAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
             I +  +++    +KII G+S  V+ KL    VDL   DPPYNL               
Sbjct: 22  NQIIQPTDNLQTISNKIINGDSFKVMTKLSPHQVDLALIDPPYNLNKQYDGLSFKK---- 77

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                     S   Y A+T+ W+   + +LK N +++V   +     +  +L+  NF I 
Sbjct: 78  ---------MSTSQYQAYTQKWIDLLKPLLKENASIYVFSDWATSMALAPILEK-NFTIQ 127

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN------------------- 167
           N I W++     + +   ++N  E + + + +P    YTFN                   
Sbjct: 128 NRITWQREKGRGSLKN--WKNGMEDIWFLTANPS--DYTFNVDQVKQRRQVVAPYRQDGV 183

Query: 168 ---YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
              + A K  N    M S++   I   S    +      HPTQKPE LL++I+++S+ P 
Sbjct: 184 AKDWQATKNGNFRDTMPSNFWDDI---SIPYWSMPENTGHPTQKPEKLLAKIILASSNPN 240

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           D I DPF GSG+S   A KL R ++GIE    Y      R+  ++   +I+
Sbjct: 241 DFIFDPFAGSGSSLVTAAKLNRRYLGIEQSLLYCAWGQYRLNQIKDDPSIQ 291


>gi|119358292|ref|YP_912936.1| DNA methylase N-4/N-6 domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119355641|gb|ABL66512.1| DNA methylase N-4/N-6 domain protein [Chlorobium phaeobacteroides
           DSM 266]
          Length = 368

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/299 (24%), Positives = 120/299 (40%), Gaps = 64/299 (21%)

Query: 12  NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
           N++ + E   ++I G++  +++ LP  +   +   PPY    +             V + 
Sbjct: 85  NRDQLDEDGIQVINGDTRDIIKSLPDNTFRCVVTSPPYWGVRDY-----------GVENQ 133

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW-VIGSYHNI------------------- 111
                  + Y           RRVL+P+GT W  IG+ +                     
Sbjct: 134 IGAEPDLQDYIKALVEIFSEVRRVLQPDGTFWLNIGNTYTSGGRKWRQEDSKNKGRAMSY 193

Query: 112 -----------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
                            + +    Q   +++ NDI+W K N  P     R   AHE L  
Sbjct: 194 RPPTPDGLKKKDLIGVAWMVAMACQLDGWYLRNDIIWHKPNCQPESVKDRLTVAHEYLFM 253

Query: 155 ASPSPKAKGYTFNYDA----LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
            S S +   Y FN +A        N     R+ W I   S +E          H    P+
Sbjct: 254 FSKSEQ---YYFNQEAIKESYTNGNGFKNKRTVWSINTESCAE---------AHFAVFPK 301

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            L+   +++ ++  D+ILDPF+G+GT G V+++L R  +GIE+  DY+ I+++R A VQ
Sbjct: 302 NLVRPCILAGSEERDLILDPFYGAGTVGIVSQELNRKCVGIEINPDYVYISSRRNARVQ 360


>gi|92116190|ref|YP_575919.1| DNA methylase N-4/N-6 [Nitrobacter hamburgensis X14]
 gi|91799084|gb|ABE61459.1| DNA methylase N-4/N-6 [Nitrobacter hamburgensis X14]
          Length = 215

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 60/253 (23%), Positives = 103/253 (40%), Gaps = 41/253 (16%)

Query: 15  SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           S  + ++ I +G+ I V++ +P++SVD I  DPPY ++      R   S+++     W +
Sbjct: 4   STNQLRNSIQRGDCIEVMQAIPSRSVDFILTDPPYLVRYK---CRDGRSIMNDDNAEWLE 60

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            ++ E Y            RVL  +        +    R     ++  F I+  IV+RK 
Sbjct: 61  PAAHEMY------------RVLNRDSLCVSFYGWTQTDRFIAAWRSAGFRIVGHIVFRKR 108

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
                   R     HE+    +    A               +         P       
Sbjct: 109 YASA---KRFVSYTHESAYVLAKGRPALP-------------EHPPADVIDFPY------ 146

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                G +LHPTQKP   L  ++ +    G ++LDPF GSG++   A++    ++GIE+ 
Sbjct: 147 ----SGNRLHPTQKPVMALMPLITAFCPEGGLVLDPFCGSGSTLVAARQAGCDYLGIELD 202

Query: 255 QDYIDIATKRIAS 267
             Y  IA +R+A+
Sbjct: 203 HRYHRIAARRLAA 215


>gi|295114924|emb|CBL35771.1| DNA modification methylase [butyrate-producing bacterium SM4/1]
          Length = 411

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 99/268 (36%), Gaps = 39/268 (14%)

Query: 20  KDKIIKGNSI-----SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           + +++ G+S       VL  +  K  +L+  DPPYN+   G   +  +            
Sbjct: 167 RHRLVCGDSTKAETYEVL--MQGKKANLVVTDPPYNVNYEGTAGKIKN-----------D 213

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
             + E +  F         +V+  + +++V  +            +  F++    +W+  
Sbjct: 214 NMAAEKFYQFLLDAFTNMEKVMAEDASIYVFHADTEGLNFRRAFTDAGFYLSGCCIWK-- 271

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
            P        +Q  HE +++        G+  N      ++       ++  P       
Sbjct: 272 KPSLVLGRSPYQWQHEPVLY--------GWKKNGKHQWYSDRKQTTIWEFEKPR------ 317

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                    HPT KP  LL+  + +S+    +ILDPF GSG++    ++  RS   IE+ 
Sbjct: 318 -----KNADHPTMKPIPLLAYPITNSSMSNTLILDPFGGSGSTLIACEQTDRSCCTIELD 372

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGK 282
           + Y D+  KR   ++           GK
Sbjct: 373 EKYCDVIIKRYVELKGSAEDVSVERDGK 400


>gi|146749645|gb|ABQ44382.1| ParB-like nuclease domain and DNA-modification methylase domain
           protein [Lactobacillus reuteri]
          Length = 402

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 49/262 (18%), Positives = 96/262 (36%), Gaps = 36/262 (13%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K  ++ G++    S  + L    V+L+  DPPYN+    +  +  +   D          
Sbjct: 164 KHTLLCGDATKKESFHKLLSDNKVNLVLTDPPYNVDYQSKAGKIKNDHQDN--------- 214

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             + +  F  A        +  + +++V  +           Q+  F++    +W+K + 
Sbjct: 215 --DKFYKFLLAAFQNMNTAMANDASIYVFHADTEGLNFRRAFQDAGFYLSGCCIWKKQSL 272

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +       +Q  HE +++         +              +  + W       S    
Sbjct: 273 V--LGRSPYQWQHEPVLYGWKHDGKHEWY----------TGRKESTIWEFDRPKQS---- 316

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                K HPT KP  LL+  +++ST     +LDPF GSG++    ++  R    +E+   
Sbjct: 317 -----KEHPTMKPIPLLAYPIMNSTMSNCTVLDPFGGSGSTLIACEQTNRICYMMELDPK 371

Query: 257 YIDIATKR-IASVQPLGNIELT 277
           Y D+   R I  V    +I + 
Sbjct: 372 YCDVIVNRYIKQVDSDQDISVE 393


>gi|281424234|ref|ZP_06255147.1| putative DNA-methyltransferase protein [Prevotella oris F0302]
 gi|281401503|gb|EFB32334.1| putative DNA-methyltransferase protein [Prevotella oris F0302]
          Length = 337

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/288 (26%), Positives = 126/288 (43%), Gaps = 42/288 (14%)

Query: 5   NSLAINENQNSIFEWK-----DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR 59
             + +    NSI + K     D I+ G+ +  L  +P +  +LI  DPPYNL  +     
Sbjct: 37  ERMLLQSKVNSIEDLKSGLFDDVIVHGDLLDCLGLIPDEYFNLIVIDPPYNLDKD----- 91

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
            + +   A+  +         Y+ + R+W       L+P+G L++ G +     +  +++
Sbjct: 92  FNGNRFSAMKSA--------GYEDYLRSWFGQVCDKLRPDGALYMCGDWKCSASMQRVIE 143

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL------KA 173
                ++N I W++           ++N  E + +A  +P  K Y FN DA+      +A
Sbjct: 144 E-RLTVINRITWQREKGRGARMN--WKNGMEDIWFAVKNP--KDYYFNIDAVKVKRRVRA 198

Query: 174 ANEDVQMRSDWL--------IPICSGSE-----RLRNKDGEKLHPTQKPEALLSRILVSS 220
                    DW             S           +      HPTQKPE L +++L++S
Sbjct: 199 PYRIEGQPKDWEQSEDGKYRFTCPSNFWDDISVPFWSMPENTEHPTQKPEKLYAKLLLAS 258

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +K GD + DPF GSGT   VA+KL R F G+E+ ++Y   A KR+   
Sbjct: 259 SKSGDRVFDPFLGSGTLAVVARKLNRKFCGVEINKEYCLWAAKRLLQA 306


>gi|317176865|dbj|BAJ54654.1| adenine specific DNA methyltransferase [Helicobacter pylori F16]
          Length = 209

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 102/223 (45%), Gaps = 21/223 (9%)

Query: 44  FADPPYNLQLNGQLYRPDHSLVDAVT-DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL 102
             DPPYN+ +         +    +    WDK       +     W+     ++ PNG +
Sbjct: 4   ITDPPYNISVKNNFSTLKSAKRQGIDFGEWDK-------NFRLLEWIKRYAPLVNPNGCM 56

Query: 103 WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
            +  SY  I  I   L+   F + + I W K+NPM     R +    E  +WA       
Sbjct: 57  VIFCSYRFINYIADFLEENGFIVKDFIQWIKNNPMSKNINRCYVQDTEFALWAVKKKA-- 114

Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK 222
            + FN    K  NE          P+ SG E+++       HPTQK  AL+ +I+   T 
Sbjct: 115 KWVFN----KPKNEKYLRPLILKSPVVSGLEKVK-------HPTQKSLALMEKIISIHTN 163

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           P DI+LDPF GSGT+G   K L R+FIGIE +++Y  IA KR+
Sbjct: 164 PNDIVLDPFMGSGTTGLACKNLERNFIGIESEKEYFQIAKKRL 206


>gi|85857855|ref|YP_460057.1| DNA modification methylase [Syntrophus aciditrophicus SB]
 gi|85720946|gb|ABC75889.1| DNA modification methylase [Syntrophus aciditrophicus SB]
          Length = 292

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 104/299 (34%), Gaps = 49/299 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I  G+S   L+ LP  SVDLI   PPY  Q                          + Y 
Sbjct: 7   IYLGDSREQLKLLPDDSVDLIVTSPPYADQRKNTYGG----------------IHPDKYV 50

Query: 83  AFTRAWLLACRRVLKPNGTLWVIG--------SYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            +     +   RVLKP GT  +              +  +   ++   +    + +W K 
Sbjct: 51  NWFLPISVQLLRVLKPTGTFILNIKEKVVEGERSTYVMELILEMRKQGWLWTEEFIWHKK 110

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN------------------- 175
           N  P     RF++A E L+  + + K   Y                              
Sbjct: 111 NCYPGKWPNRFRDAWERLLQFNKNRKFHMYQEEVMVQMGEWANSRLKNLSETDKIRDNSK 170

Query: 176 ------EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
                 +++    +      +    L  +   K H    PE L    +   TK  D +LD
Sbjct: 171 VGSGFGKNISNWLERDKAYPTNVLHLATECNNKNHSAAFPEGLPEWFIKLFTKEKDTVLD 230

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
           PF GSGT+  VA ++RR+ IGI++  +Y ++  K++ +V+             R E R+
Sbjct: 231 PFMGSGTTLIVANRMRRNSIGIDIVPEYCEMVKKQLKAVELYLLEPKAEYEKTRVEKRI 289


>gi|145301515|ref|YP_001144354.1| putative methylase [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142856397|gb|ABO92606.1| DNA methylase [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 214

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 60/250 (24%), Positives = 96/250 (38%), Gaps = 53/250 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + G+S+ ++   P  +VD I  DPPY +       R   S+ + V D W         
Sbjct: 3   RFMLGDSVQIMSTFPGAAVDFILTDPPYLVGFKD---RSGRSIANDVNDEW--------- 50

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLKP+        ++ +       +   F ++  +V+ KS      F
Sbjct: 51  ---VLPAFTQMYRVLKPHSLAVSFYGWNRVDTFMAAWKQAGFRVVGHLVFTKSYASKAAF 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        + A P P    + +                             
Sbjct: 108 IGYRHECAYLLAKGRPQVPAQPLPDVMPWAY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP + L  ++ S T+PGDI+LDPF GSG++   A K  R +IGIE+  
Sbjct: 139 ---SGNRHHPTEKPVSALQPLIESFTRPGDIVLDPFAGSGSTCVAAAKCGRRYIGIELLP 195

Query: 256 DYIDIATKRI 265
            Y      R+
Sbjct: 196 HYHQAGLNRL 205


>gi|219850691|ref|YP_002465123.1| DNA methylase N-4/N-6 domain protein [Methanosphaerula palustris
           E1-9c]
 gi|219544950|gb|ACL15400.1| DNA methylase N-4/N-6 domain protein [Methanosphaerula palustris
           E1-9c]
          Length = 396

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 67/263 (25%), Positives = 105/263 (39%), Gaps = 38/263 (14%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I+ G+S  VL +LP   VDL+   PPYN  L+                  D    ++A
Sbjct: 153 DSIVCGDSEEVLSRLPDNCVDLVLTSPPYNFGLSYH--------------EGDDGRHWDA 198

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSY------HNIFRIGTMLQNLNFWILNDIVWRKS 134
           Y +   + L  C RVLK  G   V               I   L         +I+W K+
Sbjct: 199 YFSKLFSILDQCVRVLKFGGRCLVNIQPLFSDNIPTHHLISQHLLLRRMIWKGEILWEKN 258

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N    +             W SPS     YT+ +  + +  +  +      I I +   +
Sbjct: 259 NYNCKYTAWG--------SWKSPSAPYLKYTWEFIEVFSKGDLKKTGPKEGIDITADEFK 310

Query: 195 LR----------NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
                        +     HP   PE L+ R L   +  GD++LDPF G GT+  VA++L
Sbjct: 311 AWVVARWSIGPERQMKRYNHPAMFPEELVERALKLFSYQGDLVLDPFNGVGTTTLVARRL 370

Query: 245 RRSFIGIEMKQDYIDIATKRIAS 267
           +R FIG+++  +Y   A +R+++
Sbjct: 371 QRRFIGVDLSPEYCATARERLSN 393


>gi|167042742|gb|ABZ07462.1| putative DNA methylase [uncultured marine crenarchaeote
           HF4000_ANIW133O4]
          Length = 240

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 104/236 (44%), Gaps = 4/236 (1%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           ++ +P + +DL+  DPP+ +    +    + +    ++   +     E Y  FT AW+  
Sbjct: 1   MKAIPDEKIDLVLTDPPFAINFKAKKANYNRNASRVLSGYNE--IKVEDYYNFTNAWMCE 58

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
             RVLK +G+++V   ++N+  I T L +  F  +N I+W+    +   +     + H  
Sbjct: 59  VYRVLKKSGSMYVFSGWNNLKDILTALDDNGFTTINHIIWKYQFGVVTAKKFVTSHYHCL 118

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
            +              +      ++   +       +   +      D +   PT+ P  
Sbjct: 119 FVCKDDKKIKFFPYSRFKKNAKTSDGRSLHYKDKEDVWIINREYWTGDDKT--PTKLPAE 176

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           ++ +IL  S++  D++LDPF GSG    ++K L R ++G E+ + Y D A KR+  
Sbjct: 177 IIKKILQYSSEKMDLVLDPFLGSGQVAVISKMLGRRYLGFEIVKQYYDFANKRLQK 232


>gi|159028624|emb|CAO90627.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 317

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 67/303 (22%), Positives = 122/303 (40%), Gaps = 64/303 (21%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           + +G+S + ++ +P  SV LI   PPYNL  +                 ++K  S + Y 
Sbjct: 25  LYQGDSNNFIKTIPDNSVSLIITSPPYNLGKD-----------------YEKKISLDTYL 67

Query: 83  AFTRAWLLACRRVLKPNGTL-WVIGSYHNIFRIG-------TMLQNLNFWILNDIVWRKS 134
                 L+   R+L+ NG++ W +G++     +         + + + F++ N IVW   
Sbjct: 68  ETQTKILVEFPRILQDNGSICWQVGNFVQEGEVYPLDIFYYQLFKQMGFFLRNRIVWHFG 127

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS------------ 182
           + +     +RF   +ET++W + +     Y FN D ++   +    R             
Sbjct: 128 HGLHTS--KRFSGRYETILWLTKTD---KYIFNLDPVRIPAKYPGKRHFKGKNIGKPSGN 182

Query: 183 ---------------DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
                          +W   +        N   + +HP Q P  L+ R +++ T  GD +
Sbjct: 183 PLGKNPSDVWEFLAQEWDELLWDIPNVKSNHPEKTIHPCQYPIELVERCVLALTNEGDWV 242

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA-------SVQPLGNIELTVLT 280
            DPF G GTS   +    R  +G E + +Y+ IA +RIA        ++PLG        
Sbjct: 243 FDPFAGVGTSLIASIMHNRRVMGSEKEAEYVKIARERIAAYLQGNLKIRPLGKPIHQPTG 302

Query: 281 GKR 283
            ++
Sbjct: 303 QEK 305


>gi|255008166|ref|ZP_05280292.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides
           fragilis 3_1_12]
          Length = 270

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 62/266 (23%), Positives = 100/266 (37%), Gaps = 38/266 (14%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            D+I   + +  ++++   SVD I AD PY +     L R + S+      +WD+     
Sbjct: 4   TDRIYLMDCMEGMKQIADGSVDAIIADLPYGV-----LNRSNPSV------NWDRQIP-- 50

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                  A     RR+ KP+  + + G    +F    ML     W  N +  +       
Sbjct: 51  -----LAALWEQYRRITKPDSPIILFG--QGLFSAWLMLSQPRLWRYNLVWQKDRVTGHL 103

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS----------------- 182
              R     HE ++       A          +  N   +                    
Sbjct: 104 NAKRMPLRQHEDILVFYKKQPAYHPQMTPCPPERRNHGRRKTEGFTNRCYGTMKLSPVRI 163

Query: 183 -DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
            D   P         +K G   HPTQKP AL+  ++ + T  GD++LD   GSGT+   A
Sbjct: 164 ADDKYPTSVIFMPKEHKKGAFYHPTQKPVALMEYLIRTYTDEGDVVLDNCIGSGTTAVAA 223

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIAS 267
            +  R +IG E++Q Y +IA ++I  
Sbjct: 224 IRTGRHYIGFEIEQAYCEIAERQIQE 249


>gi|262042203|ref|ZP_06015376.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040525|gb|EEW41623.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 258

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 64/260 (24%), Positives = 103/260 (39%), Gaps = 39/260 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I GN I V+   P  +VDLI  DPPY +       R   ++    TD W + +  E Y
Sbjct: 28  RFILGNCIDVMRGFPDHAVDLIVTDPPYLIGFRD---RQGRTIAGDKTDEWLQPACHEMY 84

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                       RVLK +  +    S++ + R     +   F+ +  +V+ K+       
Sbjct: 85  ------------RVLKKDALMVSFYSWNRVDRFMAAWKAAGFYAVGQLVFTKTYASNR-- 130

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
                         +   +     + ++      +   +     +P            G 
Sbjct: 131 -------------RNARARRGFVDYCHEGAYVLAKGRPVPPLKPLPDVLPFPYT----GN 173

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
            LHPTQKP   L  ++ S + PG I+LDPF GSG++   A +  R +IGIEM   Y    
Sbjct: 174 TLHPTQKPVEALQPLIESFSAPGAIVLDPFAGSGSTCVAAYRAGRRYIGIEMLAQYHRAG 233

Query: 262 TKRIASVQ-----PLGNIEL 276
           T+R+A++      P  N E 
Sbjct: 234 TERLAAMHRAVNTPAANDEW 253


>gi|332800339|ref|YP_004461838.1| DNA methylase N-4/N-6 domain-containing protein [Tepidanaerobacter
           sp. Re1]
 gi|332698074|gb|AEE92531.1| DNA methylase N-4/N-6 domain protein [Tepidanaerobacter sp. Re1]
          Length = 463

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 59/276 (21%), Positives = 103/276 (37%), Gaps = 36/276 (13%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +++ G+S    +  + L  K  +L   DPPYN+              D   D       
Sbjct: 220 HRLLCGDSTKAKTYEKLLDGKKANLAVTDPPYNVNFTAGKENERLIKNDNQKD------- 272

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            + +  F  A      + L   G L+V  +          ++ + F +    +W K + +
Sbjct: 273 -DEFYEFLLAAFKNIYQALADGGALYVFHADTEGLNFRNAVKEVGFHLSGVCIWVKDSLV 331

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                   Q  HE +I+         +            D +  + W       S     
Sbjct: 332 LGRSDY--QWQHEPIIYCWKPTGRHRWY----------ADRKQTTVWQFDRPKKS----- 374

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
               K HPT KP AL +  + +S+ P  I+LDPF GS ++G   ++L R    IE+ + Y
Sbjct: 375 ----KEHPTMKPVALCAYPIQNSSAPNGIVLDPFSGSFSTGIACEQLDRICYAIELDEKY 430

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
           +D   KR   V+ +G+ +   L   R E ++ +   
Sbjct: 431 VDAGVKRY--VEYMGSDDEVFLI--RDEKKIPYKAC 462


>gi|262113732|emb|CAR95399.1| hypothetical protein [Streptococcus phage phi-m46.1]
          Length = 442

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 57/268 (21%), Positives = 109/268 (40%), Gaps = 37/268 (13%)

Query: 20  KDKIIKGNSISVL---EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K ++I G+S  V    + L  K  +L+  DPPYN+ +     +  +          D   
Sbjct: 195 KHRVICGDSTKVETYEQLLGDKKANLVVTDPPYNVDVEETAGKILN----------DNMP 244

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E Y  F         + ++ + +++V  +           ++  F++    +W+K++ 
Sbjct: 245 DSEFY-QFLFDMFTQVEKHIESDASIYVFHADTEGLNFRKAFKDAGFYLSGCCIWKKTSL 303

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +       +Q  HE  ++         +            D +  + W       S    
Sbjct: 304 V--LGRSPYQWQHEPCLFGWKQKGKHQWF----------SDRKQTTIWEYDRPKSS---- 347

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                K HPT KP  L++  + +S+  G ++LDPF GSG++   A +  R   GIE+ + 
Sbjct: 348 -----KDHPTMKPIPLMAYPIQNSSMRGTLVLDPFLGSGSTLMAADQTGRVCYGIELDEK 402

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRT 284
           ++D+  KR   ++  GN  +TVL   +T
Sbjct: 403 FVDVIVKRY--IESTGNDNVTVLRDGQT 428


>gi|114566374|ref|YP_753528.1| adenine-specific DNA-methyltransferase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|114337309|gb|ABI68157.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 459

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 117/296 (39%), Gaps = 33/296 (11%)

Query: 21  DKIIKGNSISVLEKLP----AKSVDLIFADPPY--NLQLNGQLY--RPDHSLVDAVTDSW 72
           ++I +G++++VL  L     A  +DLI+ DPPY  N   N ++                 
Sbjct: 60  NRIYQGDNLAVLNLLLQQGFAGKIDLIYIDPPYLSNSNYNSRISVEHQGQKYFIERLAFK 119

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           D+     +Y       L   + +L   G+++V   +H+   +  +L  +           
Sbjct: 120 DRDEDLVSYLQQIYKRLKIMKMLLSEQGSIFVHLDWHSSHYVKILLDEIFSSDNFINEII 179

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL------------------KAA 174
                 +   R F   H+ ++W       K YTFN                         
Sbjct: 180 WCYGGGSGTRRHFHRKHDQILWYGKG---KDYTFNPQYRPYTEGTLQRGLTRVKGKKYTL 236

Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
           +++  +  DW + I         ++ +   PTQKP ALL RI+ S++ PGD++ D + GS
Sbjct: 237 HKEGALLQDWWVDINKILSPTARENLK--FPTQKPLALLKRIIASASNPGDLVADFYAGS 294

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRI--ASVQPLGNIELTVLTGKRTEPRV 288
           GT+    +++ RS+I  +  +  I  +  R+     +P    EL     +  +P +
Sbjct: 295 GTTAEACEEMNRSWISCDCSKLAIQSSRYRLLRKKARPFQITELIEEDNEEQKPGI 350


>gi|309807159|ref|ZP_07701134.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
           03V1-b]
 gi|308166446|gb|EFO68650.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
           03V1-b]
          Length = 230

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 112/245 (45%), Gaps = 25/245 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I   + + +L+ LP  S+DL+  DPPY ++  G                W +   F   +
Sbjct: 6   IFNQDCMQMLKDLPKNSIDLVVTDPPYIVKTEGG----GAGAFGYQNRKWHQEIEF-MTN 60

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F+   L    +V+K    +++  S + + ++    +N      N I W K NP+P+   
Sbjct: 61  GFSNNVLDELCQVMKKIN-IYIFCSQYQLTQLINYFENKKCNW-NLISWHKDNPVPSCNN 118

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +   +  E + +A       G T+              +  + +   +  E+ + K    
Sbjct: 119 KYL-SDTEYIFFAREKGVKLGGTY------------YTKRKYYVTHINTKEKHQYK---- 161

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPT KP +++  ++++S+K  D+ILDPF GSG++G  A KL R FIGIE+K +Y  IA 
Sbjct: 162 -HPTVKPVSIIDNLIINSSKEQDVILDPFMGSGSTGESALKLDRKFIGIEIKPEYYQIAC 220

Query: 263 KRIAS 267
            R+  
Sbjct: 221 SRLKK 225


>gi|320538779|ref|ZP_08038457.1| putative DNA methylase [Serratia symbiotica str. Tucson]
 gi|320031168|gb|EFW13169.1| putative DNA methylase [Serratia symbiotica str. Tucson]
          Length = 214

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 60/250 (24%), Positives = 97/250 (38%), Gaps = 43/250 (17%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           I G+S+ V+   PA S+D I  DPPY +       R   S+ +   D W           
Sbjct: 5   ILGDSMQVMAGYPANSIDFILTDPPYLVGY---TDRSGRSIANDKKDDW----------- 50

Query: 84  FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNFRG 142
             R       R+LKP+        ++ +       +   F ++  +V+ K       F G
Sbjct: 51  -VRPAFREIFRLLKPDSLAVSFYGWNRVDTFMAAWKQTGFRVVGHLVFTKPYASKSAFVG 109

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
            + + A               Y           +       W               G +
Sbjct: 110 YQHECA---------------YILAKGRPALPAQPRSDVQPWEY------------TGNR 142

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPT+KP ++L  ++ S T+PG I+LDPF GSG++   A +  R +IGIE+   Y  I  
Sbjct: 143 HHPTEKPVSILQALIESFTQPGAIVLDPFAGSGSTCVAAAQAGRRYIGIELLAQYHTIGQ 202

Query: 263 KRIASVQPLG 272
           +R+  ++PL 
Sbjct: 203 QRLHRMRPLS 212


>gi|215481968|ref|YP_002324150.1| Modification methylase CfrBI [Acinetobacter baumannii AB307-0294]
 gi|213986000|gb|ACJ56299.1| Modification methylase CfrBI [Acinetobacter baumannii AB307-0294]
          Length = 384

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 65/285 (22%), Positives = 105/285 (36%), Gaps = 41/285 (14%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
            + + + ++ E ++ +I+GNSI  L+ LP  SV+LIF  PPY                  
Sbjct: 101 KLTKKEITLSELENMVIEGNSIESLKYLPEDSVNLIFTSPPY----------------YN 144

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY---------------HNIF 112
               + ++S++E Y    R  +  C RVL       +  S                   F
Sbjct: 145 AKPEYSEYSTYEEYLELMRQVIKGCHRVLSEGRFFVLNISPVLIRRASRSESSKRIAVPF 204

Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA-- 170
               +     F  ++DI W K        GR  + A +             Y   Y    
Sbjct: 205 DFHKLFIEEGFEFIDDIHWVKPEGAGWAFGRGRRFAADRNPLQYKPVPVTEYILVYRKKT 264

Query: 171 ----LKAANEDVQMRSDWLIPICSGSE----RLRNKDGEKLHPTQKPEALLSRILVSSTK 222
                    +    ++     +  G E       N    K HP   P  L  +++   + 
Sbjct: 265 DRLIDWNIRKHPDQKAVEESKVEDGYETTNLWRINPSRSKDHPATFPVELAEKVIKYYSF 324

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
             D++LDPF GSGT+G  A  L R F+ +E++  YI +  KR +S
Sbjct: 325 KNDVVLDPFGGSGTTGIAALNLNRRFVMMELESKYIQVMKKRFSS 369


>gi|189346183|ref|YP_001942712.1| DNA methylase N-4/N-6 domain protein [Chlorobium limicola DSM 245]
 gi|189340330|gb|ACD89733.1| DNA methylase N-4/N-6 domain protein [Chlorobium limicola DSM 245]
          Length = 368

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 117/299 (39%), Gaps = 64/299 (21%)

Query: 12  NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
           N+  + E   ++I G++   ++ LP  +   +   PPY    +             V + 
Sbjct: 85  NRELLDEEGVQVINGDTRDSIKSLPDNTFRCVVTSPPYWGVRDY-----------GVENQ 133

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW-VIGSYHNI------------------- 111
                  + Y           RRVLK +GT W  IG+ +                     
Sbjct: 134 IGAEPDLKDYVNALVEIFSEVRRVLKSDGTFWLNIGNTYTSGGRKWRQEDSKNKGRAMSY 193

Query: 112 -----------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
                            + +    Q   +++ NDI+W K N  P     R   +HE L  
Sbjct: 194 RPPTPDGLKKKDLIGVAWMVAMACQLDGWYLRNDIIWHKPNCQPESVKDRLTVSHEYLFM 253

Query: 155 ASPSPKAKGYTFNYDA----LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
            S S +   Y FN +A        N     R+ W I     +E          H    P+
Sbjct: 254 FSKSEQ---YYFNQEAIKESYTNGNGFKNKRTVWSINTEPCAE---------AHFAVFPK 301

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            L+   +++ ++  D+ILDPF+GSGT G V+ +L R  +GIE+ QDY+DIA+KR A VQ
Sbjct: 302 NLVRPCILAGSEENDLILDPFYGSGTVGIVSMELNRKCVGIEINQDYVDIASKRNARVQ 360


>gi|17233429|ref|NP_490548.1| putative methylase [Salmonella typhimurium LT2]
 gi|167995157|ref|ZP_02576247.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261888742|ref|YP_003264431.1| putative methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|305696893|ref|YP_003864208.1| putative adenine-specific DNA methylase [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16445250|gb|AAL23468.1| putative adenine-specific DNA methylase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|205327122|gb|EDZ13886.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261857330|emb|CBA11403.1| putative adenine-specific DNA methylase [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|267990094|gb|ACY86491.1| putative adenine-specific DNA methylase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|304376195|dbj|BAJ15357.1| putative adenine-specific DNA methylase [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312915779|dbj|BAJ39752.1| putative methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|323132992|gb|ADX20421.1| putative adenine-specific DNA methylase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332991469|gb|AEF10451.1| putative adenine-specific DNA methylase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 226

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 102/254 (40%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I GN + ++   P ++VD I  DPPY +       R   S+    TD W + +  + Y
Sbjct: 3   RLILGNCVDIMSGFPERAVDFILTDPPYLVGFRD---RSGRSIAGDRTDEWLQPACNQMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  L     ++ + R     ++  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALLVSFYGWNRVDRFMAAWKSAGFSVVGHLVFTKNYSSKSAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ +                             
Sbjct: 108 VGYRHECAYVLAKGRPALPQNPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T    I+LDPF GS ++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHTNAIVLDPFAGSASTCVAALQAGRRYIGIELME 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+ +VQ
Sbjct: 196 QYHKAGIERLTAVQ 209


>gi|282879893|ref|ZP_06288620.1| DNA (cytosine-5-)-methyltransferase [Prevotella timonensis CRIS
           5C-B1]
 gi|281306287|gb|EFA98320.1| DNA (cytosine-5-)-methyltransferase [Prevotella timonensis CRIS
           5C-B1]
          Length = 331

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 81/285 (28%), Positives = 130/285 (45%), Gaps = 39/285 (13%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
           +K  L++N+ + S  +  D II  +    L+ +P    +LI  DPPYNL  +    +   
Sbjct: 24  EKFILSVNDIKTSFAD--DTIINADLFDCLDYIPNGYFNLIIIDPPYNLDKDFHGKKFSS 81

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
              DA             Y+ + R+W       L PNGTL+V G +     +  +++   
Sbjct: 82  MKSDA-------------YEDYLRSWFYKVCDKLAPNGTLYVCGDWKCSSSMQRVIEE-R 127

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK------AANE 176
             ++N I W++           ++NA E + +A  +P  K Y F+ DA+       A  +
Sbjct: 128 LTVINRITWQREKGRGAKSN--WKNAMEDIWFAVRNP--KDYYFDVDAVMMKRKVIAPYK 183

Query: 177 DVQMRSDWL--------IPICSGSE-----RLRNKDGEKLHPTQKPEALLSRILVSSTKP 223
                 DW         I   S           +      HPTQKPE L ++++++STK 
Sbjct: 184 VDGNPKDWEETENGNFRITYPSNFWDDISIPFWSMPENTDHPTQKPEKLYAKLVLASTKL 243

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           GD I DPF GSGT+  VA+KL RS+ G+E+ ++Y   A KR+ + 
Sbjct: 244 GDKIFDPFLGSGTTAVVAQKLGRSYCGVEINREYCYWAVKRLMNA 288


>gi|325478683|gb|EGC81794.1| DNA (cytosine-5-)-methyltransferase [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 412

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 54/268 (20%), Positives = 101/268 (37%), Gaps = 35/268 (13%)

Query: 20  KDKIIKGNSIS--VLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K K++ G+S      EKL  +S  +LI  DPPYN+   G   +  +  ++          
Sbjct: 168 KHKLVCGDSTDETTYEKLMKESKANLIITDPPYNVNYEGSAGKIKNDNMEQSK------- 220

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
               +  F  +  L   + L  +G+++V  +           Q+  F++    +W+K + 
Sbjct: 221 ----FYEFLLSSFLNMEKFLADDGSIYVFHADTEGLNFRKAFQDAGFYLSGTCIWKKQSL 276

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +       +Q  HE +++         +                  ++  P  +G     
Sbjct: 277 V--LGRSPYQWQHEPILYGWKKKGKHNWY--------TGRKESTIWEFDKPRKNGD---- 322

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                  HPT KP  LLS  + +S+    I+LDPF GSG++    ++  R    IE+ + 
Sbjct: 323 -------HPTMKPIPLLSYPIKNSSMTNAIVLDPFGGSGSTLIACEQTDRICRMIELDEK 375

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRT 284
           ++D+   R             +  GK  
Sbjct: 376 FVDVIVNRFIESVGSDKDVSLLRDGKEY 403


>gi|303239110|ref|ZP_07325640.1| DNA methylase N-4/N-6 domain protein [Acetivibrio cellulolyticus
           CD2]
 gi|302593448|gb|EFL63166.1| DNA methylase N-4/N-6 domain protein [Acetivibrio cellulolyticus
           CD2]
          Length = 419

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 100/267 (37%), Gaps = 32/267 (11%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K +++ G+S     VL  +  K  +    DPPYN+   G       +  DA+    D+  
Sbjct: 167 KHRLMCGDSTILQDVLTLMDGKKANTCVTDPPYNVDYTG-------ATKDALKIKNDRLE 219

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             + Y  F  +       VL   G ++V  +           ++  F + N  +W K   
Sbjct: 220 DGKFY-EFLLSAFKNVFEVLDNGGGIYVFHADTEGLNFRKAFKDAGFHLANVCIWVKQ-- 276

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
                   +Q  HE +++      +  +  +       N D   ++              
Sbjct: 277 SMVLGRSDYQWQHEPVLYGWKPTGSHKWYSDRKQTTIWNFDRPSKNVE------------ 324

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                  HPT KP  L++  + +S+    I+LDPF GSG++   +++L R    +E+ + 
Sbjct: 325 -------HPTMKPVNLVAYPIKNSSLSNCIVLDPFGGSGSTLIASEQLGRICNTMELDEK 377

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKR 283
           Y D+  KR  +     +    +  G +
Sbjct: 378 YCDVIVKRFINQAERTDDVFLLRNGSK 404


>gi|325979236|ref|YP_004288952.1| DNA methylase [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
 gi|325179164|emb|CBZ49208.1| DNA methylase [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
          Length = 424

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 53/259 (20%), Positives = 105/259 (40%), Gaps = 22/259 (8%)

Query: 21  DKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +++ G+S +   + + L  + +DL   DPPYN+   G+         D + D       
Sbjct: 163 HRLMCGDSTNPDHLAKLLAGQPIDLYVTDPPYNVAYEGKTKAALTIPNDNLDD------- 215

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            +A+  F         + LK  G  ++  +        T LQ + +     ++W K + +
Sbjct: 216 -QAFQTFLVDAFHNVDQYLKAGGVFYIWHADKERLAFSTALQQVGWLEKQALIWVKDSFV 274

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD---------WLIPI 188
                + +Q  HE  ++   S  +  +  ++         ++ +S          +    
Sbjct: 275 --LGRQDYQWQHEPCLYGWKSGASHYFVSDFSQSTILESQLETKSKQELIALIKTYQANQ 332

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
            +   R+      + HPT KP ALL R + SS++ GD +LD F GSG++    ++L R  
Sbjct: 333 PTSILRVNRPTKNEDHPTMKPIALLERFIRSSSRRGDCVLDTFAGSGSTLLACERLGRKS 392

Query: 249 IGIEMKQDYIDIATKRIAS 267
             +E++  Y++    R   
Sbjct: 393 YSMELEPKYVERILTRFQQ 411


>gi|119386071|ref|YP_917126.1| DNA methylase N-4/N-6 domain-containing protein [Paracoccus
           denitrificans PD1222]
 gi|119376666|gb|ABL71430.1| DNA methylase N-4/N-6 domain protein [Paracoccus denitrificans
           PD1222]
          Length = 225

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 62/254 (24%), Positives = 98/254 (38%), Gaps = 41/254 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           ++ +I G+ I V++     SVD I  DPPY               V    D   +  + +
Sbjct: 9   RNLVINGDCIEVMQAFGTGSVDFILTDPPY---------------VTRFRDRQGRTVAND 53

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
               + R       RVLK  G       ++ +       +   F I+  +V+RK      
Sbjct: 54  DNARWLRPAFAQMHRVLKQGGFCVSFYGWNKVDLFVEAWKAAGFRIVGHLVFRKRYAS-- 111

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
              R  +  HE     +                       +      P            
Sbjct: 112 -SARFLRYEHEQAYLLAKGDPVLP-------------ARPVPDVLDFPYT---------- 147

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G KLHPTQKP A L R++ + T+PGD++LDP  GSG++ A A  L R ++G+E+   +  
Sbjct: 148 GNKLHPTQKPVAALRRLIGAFTQPGDLVLDPLSGSGSTLAAAHLLGRDWLGVELDVAHYQ 207

Query: 260 IATKRIASVQPLGN 273
            A KR+A++Q    
Sbjct: 208 TAGKRMAALQQRDR 221


>gi|308273843|emb|CBX30444.1| hypothetical protein N47_Q17670 [uncultured Desulfobacterium sp.]
          Length = 321

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 116/295 (39%), Gaps = 45/295 (15%)

Query: 5   NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL 64
            ++ I EN     E  DKI    S  +++ +P  SV L+   PPYN++            
Sbjct: 42  ETIKIIENHIP-DESIDKIYCK-SSEIMDDIPDYSVHLMVTSPPYNVKK----------- 88

Query: 65  VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS--------YHNIFRIGT 116
                  +DK  S + Y    +       + L   G   +  +          + + I  
Sbjct: 89  ------EYDKDLSLDEYRTLLKVVFKETYKKLVTGGRACINIANLGRKPYIPLHSYIIED 142

Query: 117 MLQNLNFWILNDIVW-RKSNPMPNFRGRRFQNA--------HETLIWASPSPKAKGYTFN 167
           MLQ L +++  +I+W + S+  P+     +Q+A        HE ++  S    ++    N
Sbjct: 143 MLQ-LGYFMRGEIIWNKASSSSPSTAWGSWQSAANPVLRDIHEYILVFSKESFSRKRGNN 201

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
            D +         +S W  P  S             HP   PE L  R++   T   D++
Sbjct: 202 KDTIAKEEFLEWTKSVWTFPAVSA--------RSIGHPAPFPEELPHRLIQLYTFEKDVV 253

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
           LDPF GSGT+   A K  R +IG +++ +Y+ +A +RI       N+       K
Sbjct: 254 LDPFCGSGTACLTALKDGRHYIGYDIEPEYVKLANRRIKERSSQQNLFEHEPPSK 308


>gi|209526335|ref|ZP_03274864.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
 gi|209493264|gb|EDZ93590.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
          Length = 271

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 110/290 (37%), Gaps = 53/290 (18%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++IIKGN I V++     S+DL    PPY                       D    ++ 
Sbjct: 5   NQIIKGNCIEVMKSFDENSIDLTITSPPY-----------------------DNLRKYKG 41

Query: 81  YDAFTRAWLLACRRVLKPNGTL-WVIGS-----YHNIFRIGTML---QNLNFWILNDIVW 131
           Y            RV KP G + W++G                L   + + F + + +++
Sbjct: 42  YTFPFEEIARQLYRVTKPGGIVVWIVGDATIKGSETGTSFKQALYFKEEIGFNLHDTMIF 101

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKA----------------KGYTFNYDALKAAN 175
           +KSNP+P    +R+ N  E +   S                      G T+   +     
Sbjct: 102 QKSNPIPQIYRKRYNNIFEYMFVFSKGNVKTHNPIKIDCLHAGLELHGTTYKNYSRGKQK 161

Query: 176 EDVQMRSDWLIPIC-SGSERLRNKDGE----KLHPTQKPEALLSRILVSSTKPGDIILDP 230
                       I  +  E +  K  E    K HP   P AL    + S T PG+I+LDP
Sbjct: 162 RGKMAHPVKNQKIKGNIWEYVVGKKSEDQEAKDHPAPFPCALACDHIKSWTNPGEIVLDP 221

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
             GSGT+   A +L R +IGIE+  +Y ++A KRI  ++    + +  L 
Sbjct: 222 MCGSGTTCRSAFQLGRQYIGIEISHEYCELARKRIQKIEAQPRLPILDLE 271


>gi|162147849|ref|YP_001602310.1| modification methylase MjaV [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209542469|ref|YP_002274698.1| DNA methylase N-4/N-6 domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786426|emb|CAP56008.1| putative modification methylase MjaV [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530146|gb|ACI50083.1| DNA methylase N-4/N-6 domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 271

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 61/272 (22%), Positives = 106/272 (38%), Gaps = 43/272 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++++G+ + VL ++ A SVD++   PPYN+ L  + Y                  S   
Sbjct: 17  HQLVRGDCLRVLRRMDADSVDVVVTSPPYNIGLGYRTYS--------------DRMSETQ 62

Query: 81  YDAFTRAWLLACRRVLKPNGTLW-----VIGSYHNIFRIGTMLQNLNFWILNDIVW---- 131
           Y  +  A      RV++P+G+ +             F +   L+ + F + N I W    
Sbjct: 63  YLDWMMAVARELHRVMRPDGSFFLNIAGSSAQPWIPFELAVRLREI-FHLQNHISWIKSV 121

Query: 132 -----RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN---------YDALKAANED 177
                   +  P    R     HE L   + S   +    +           A +   +D
Sbjct: 122 SVNEDTFGHFKPVNSARYLHRNHEHLFHLTRSGTVELNRLDIGVPYKDKSNIARRGHEQD 181

Query: 178 VQMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
            + R D W IP     E ++ K  +  HP   P  L    +    +PG ++LDPF G+GT
Sbjct: 182 RRCRGDTWFIPY----ETVQGKAQKFNHPGTFPVQLPRMCIRLHGRPGAVVLDPFMGTGT 237

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +   A++     IGI++   Y+ +A  R+   
Sbjct: 238 TLVAAQEEGARAIGIDLDTAYVTVARDRLTQA 269


>gi|282164296|ref|YP_003356681.1| putative DNA methylase [Methanocella paludicola SANAE]
 gi|282156610|dbj|BAI61698.1| putative DNA methylase [Methanocella paludicola SANAE]
          Length = 293

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 58/263 (22%), Positives = 102/263 (38%), Gaps = 42/263 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI    S   +++LP  SV L+   PPYN+                    +D   + + 
Sbjct: 54  NKIFCK-SSERMDELPDNSVHLMVTSPPYNVGK-----------------EYDDDLTLDE 95

Query: 81  YDAFTRAWLLACRRVLKPNGTLW----VIGSYHNIFRIGTMLQNL---NFWILNDIVWRK 133
           Y A          RVL P G +      +G    +     M ++L    F +  +++W K
Sbjct: 96  YRALLFCVWEEVYRVLVPGGRVCLNVANLGRKPYLPLHAFMAEDLLKAGFLMRGEVIWNK 155

Query: 134 SNPMPNFRGRR---------FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
           ++                   ++ HE ++  S    ++        +         +S W
Sbjct: 156 ASAAGTSTAWGSWQSAKNPTLRDVHEYILVFSKQSYSRTPGDKRSTITKEEFLEYTKSVW 215

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
                S          +  HP   P  L SR +   T  GD++LDPF GSGT+   AK L
Sbjct: 216 SFGSESAK--------KIGHPAPYPVELPSRCIKLYTFEGDVVLDPFIGSGTTAVAAKML 267

Query: 245 RRSFIGIEMKQDYIDIATKRIAS 267
            R ++G E+ ++Y+++A +R+ +
Sbjct: 268 DRHYVGYEVDEEYVELARRRLKN 290


>gi|219849128|ref|YP_002463561.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
           aggregans DSM 9485]
 gi|219543387|gb|ACL25125.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aggregans DSM
           9485]
          Length = 329

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 67/314 (21%), Positives = 119/314 (37%), Gaps = 72/314 (22%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+   +L ++P  SV LI   PPYNL                    ++   S E Y 
Sbjct: 25  LFSGDVSELLTQVPDNSVALIVTSPPYNLGK-----------------EYEDRVSIEQYL 67

Query: 83  AFTRAWLLACRRVLKPNGTL-WVIGSYHNIFRIGT-------MLQNLNFWILNDIVWRKS 134
                 +    RVL+ +G++ W +G++     +         + + L   + N I+W+  
Sbjct: 68  KTQAQVIAQLHRVLREDGSICWQVGNFVENGEVYPLDVLYYPIFKELGMRLRNRIIWKFG 127

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS------------ 182
           + +     RRF   +ET++W +    +  Y FN DA++   +    R             
Sbjct: 128 HGL--HASRRFSGRYETILWFTK---SDRYVFNLDAVRVPAKYPGKRHFKGPNKGKPSGN 182

Query: 183 ---------------DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
                          DW   +        N   + +HP Q P  L+ R +++ T  GD +
Sbjct: 183 PLGKNPSDVWEILVQDWEELVWDIPNVKSNHPEKTVHPCQFPIELVERCVLALTNEGDWV 242

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS---------------VQPLG 272
            DP+ G G++   A    R  +G E +  Y++IA +RI                  QP G
Sbjct: 243 FDPYMGVGSALIAALMHDRRAMGCEKEAAYVEIARQRIVDYFNGTLRYRPMGKPVYQPTG 302

Query: 273 NIELTVLTGKRTEP 286
             +++ +  +  EP
Sbjct: 303 KEKVSQIPEEWKEP 316


>gi|85715342|ref|ZP_01046324.1| hypothetical protein NB311A_12479 [Nitrobacter sp. Nb-311A]
 gi|85697763|gb|EAQ35638.1| hypothetical protein NB311A_12479 [Nitrobacter sp. Nb-311A]
          Length = 210

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 94/247 (38%), Gaps = 41/247 (16%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            I+ G+ I  +  L   SVD +  DPPY ++   +                 +  + + +
Sbjct: 5   TILHGDCIQTMRGLAGASVDFVLTDPPYGVRYRSRDG---------------QTIANDNH 49

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +         RV+ P    +    ++   +  T+ + L F ++  +V+ K        
Sbjct: 50  LTWLYPAFAEVYRVMMPGSLCFSFYGWNAADQFLTVWKALGFRVVGHVVFAKRYAASRL- 108

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
                + HE           +GY             +     W               G 
Sbjct: 109 --FLAHRHE-----------QGYLLAKGNPVLPQNPLPDVLPWAY------------TGN 143

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           +LHPTQKP   L R++ +  KPG I+LDPF GSG++   AK   R FIGIE+ + +   A
Sbjct: 144 RLHPTQKPVKPLQRLIETFCKPGGIVLDPFCGSGSTLLAAKLSGRPFIGIEIDRQHHATA 203

Query: 262 TKRIASV 268
            KR+ + 
Sbjct: 204 LKRLTAA 210


>gi|163731832|ref|ZP_02139279.1| hemagglutinin-associated protein [Roseobacter litoralis Och 149]
 gi|161395286|gb|EDQ19608.1| hemagglutinin-associated protein [Roseobacter litoralis Och 149]
          Length = 226

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 100/258 (38%), Gaps = 41/258 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++II G++ +VL+ +   S+DL+  DPPY +    +  R   +  +              
Sbjct: 4   NQIIHGDAAAVLKTIEEGSIDLVITDPPYLVNYKDRQGRSLQNDNNPGG----------- 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                        R +K N        +  + +     +     I+++IVW K       
Sbjct: 53  ----VLPVFEPMARAMKQNSYAICFSGWSALPQFTQAWEAAGLKIVSEIVWSKKYTS--- 105

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           R    Q  HE+    +    AK               +     W+              G
Sbjct: 106 RRGFTQYRHESAYVLAKGNPAKPV-----------RPMSSVQGWVY------------SG 142

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K HPT+K   +L+ ++   ++PGD++ DPF GSG++   A    R ++GIE+++ + D 
Sbjct: 143 NKRHPTEKAVEILAPLVRCFSRPGDLVCDPFSGSGSTSVAAVLNGRDYLGIELEKAHCDT 202

Query: 261 ATKRIASVQPLGNIELTV 278
           A  R+A  Q   + + T 
Sbjct: 203 ARARLAGAQRYRSEQATQ 220


>gi|328954138|ref|YP_004371472.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
           11109]
 gi|328454462|gb|AEB10291.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
           11109]
          Length = 298

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 62/257 (24%), Positives = 103/257 (40%), Gaps = 27/257 (10%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           ++++II  +S   + ++P  S+ L+   PPYN+                 T  +D+  S 
Sbjct: 50  YENQII-AHSSENMVEIPDNSLHLMITSPPYNV-----------------TKEYDENLSL 91

Query: 79  EAYDAFTRAWLLACRRVLKPNG-TLWVIGSYHNIFR------IGTMLQNLNFWILNDIVW 131
           E Y    R       RVL   G     I +            I TM+ ++ F +  +I+W
Sbjct: 92  EEYLQLLRMVFSETYRVLVNGGRACVNIANLGRRPYLPLSDFISTMMIDIGFRMRGEIIW 151

Query: 132 RKSNPMPNFRGRR-FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
            K            +Q+A   ++              +   K  N +  +  +  +    
Sbjct: 152 NKGAGAGVSMAWGSWQSASNPVLRDVHEYIMVFSKGAFMRQKPENRENTISREQFMEWTK 211

Query: 191 GSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
               +  +  +K+ HP   P  L  R++   T  GD+ILDPF GSGT+G  A K  R +I
Sbjct: 212 SVWTMNPESAKKVEHPAPFPVELPYRLIQLYTFKGDVILDPFMGSGTTGIAALKADRKYI 271

Query: 250 GIEMKQDYIDIATKRIA 266
           G E    Y+ +A +RIA
Sbjct: 272 GYENNPKYVKLAEERIA 288


>gi|328954607|ref|YP_004371941.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
           11109]
 gi|328454931|gb|AEB10760.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
           11109]
          Length = 309

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 57/278 (20%), Positives = 103/278 (37%), Gaps = 43/278 (15%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +++ II G+S   +  +P  S+ L+   PPYN+                 T  +D++ S 
Sbjct: 50  YENSIILGSS-ENMTLIPDNSLHLMITSPPYNV-----------------TKEYDQYLSL 91

Query: 79  EAYDAFTRAWLLACRRVLKPNG-TLWVIGSYHNIFR------IGTMLQNLNFWILNDIVW 131
           + Y    +       RVL   G     I +            +  ++  + F +  +I+W
Sbjct: 92  KEYLQLLQRVFSETYRVLTNGGRACVNIANLGRQPYLPLSDFVSAIMLEIGFQMRGEIIW 151

Query: 132 RKSNPMPNFRGRR---------FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
            K                     ++ HE ++  +     +         +      +   
Sbjct: 152 NKGAGAGVSMAWGSWRSASAPVLRDVHEYILVFAKGSFRRK----KPRGRENTISKEQFM 207

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           +W   I + +     K G   HP   P  L  R++   T   D+ILDPF GSGT+   A 
Sbjct: 208 EWTKSIWTMNPESAKKVG---HPAPFPIELPYRLIQLYTFTEDVILDPFMGSGTTAIAAL 264

Query: 243 KLRRSFIGIEMKQDYIDIATK--RIASVQPLGNIELTV 278
           K  R +IG E   +Y+ +A +  R+ S + L +    +
Sbjct: 265 KAGRKYIGYENNPEYVKLAEEGLRLLSQRDLKSEPFPI 302


>gi|18202058|sp|O52692|MTS1_STRCS RecName: Full=Modification methylase ScaI; Short=M.ScaI; AltName:
           Full=N-4 cytosine-specific methyltransferase ScaI
 gi|2865584|gb|AAC97178.1| ScaI methyltransferase [Streptomyces caespitosus]
          Length = 304

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 59/268 (22%), Positives = 108/268 (40%), Gaps = 45/268 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+S+ +L+ +P +  DL    PPYN+                    ++   S E Y 
Sbjct: 53  LYHGDSLELLKSMPQQIFDLTVTSPPYNIGK-----------------EYEGVLSIEEYI 95

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM-------LQNLNFWILNDIVWRKSN 135
           ++   W+    R     G  W+   Y  +   G              F+++ ++VW    
Sbjct: 96  SWCETWMSRVHRATSAGGAFWLNVGYVPVPNQGKAVPIPYLLWDKSPFYMIQEVVWNYGA 155

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM--------------- 180
            + + +    +N  E  +W    P    Y F+ D+++  N                    
Sbjct: 156 GVASRKSFSPRN--EKFLWYVRDPL--NYYFDLDSVRDPNVKYPNQKKNGKLKCNPLGKN 211

Query: 181 -RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
               W  P  +   +  + +    HP Q P A++ R++ + +    +ILDPF GSGT+  
Sbjct: 212 PTDVWQFPKVTSGAKRSSVE-RTAHPAQFPSAVIERVIKACSPSDGVILDPFLGSGTTSL 270

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            A+K  R  +GIE+++DY+DIA  R+ +
Sbjct: 271 TARKQGRCSVGIEIREDYLDIAVGRLEA 298


>gi|220913251|ref|YP_002488560.1| DNA methylase N-4/N-6 domain protein [Arthrobacter chlorophenolicus
           A6]
 gi|219860129|gb|ACL40471.1| DNA methylase N-4/N-6 domain protein [Arthrobacter chlorophenolicus
           A6]
          Length = 290

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 63/269 (23%), Positives = 109/269 (40%), Gaps = 26/269 (9%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQL---------------NGQLYRPDHSLVDA 67
           ++  ++   L  LP  +  LI+ DPP+N                  +G          D 
Sbjct: 14  VVHADNAQYLPTLPDGAFTLIYVDPPFNTGRAQSRQETRMVANAGGSGDRVGFKGRSYDT 73

Query: 68  VTDSWDKFSS-FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFW 124
           +  +  ++   F  Y +F    L+   R+L  +GTL++   Y  +     ML  +     
Sbjct: 74  IKGALHRYDDAFSDYWSFLEPRLVEAWRLLADDGTLYLHLDYREVHYAKVMLDAIFGREC 133

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF------NYDALKAANEDV 178
            LN+I+W            R+   H+ ++    +P    +         Y A        
Sbjct: 134 FLNEIIWAYDYGA--RARNRWPTKHDNILVYVKNPSKYHFDNAEVDREPYMAPGLVTPAK 191

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
           +        +   +        +  +PTQKPE L+ R++ +S++PGD  LD F GSGT G
Sbjct: 192 RELGKLPTDVWWHTIVSPTGKEKTGYPTQKPEGLVRRVVSASSRPGDWCLDFFAGSGTLG 251

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           AVA KL R F+ ++  Q  +DI  +R+ +
Sbjct: 252 AVAAKLGRKFVCVDQNQPAVDIMARRLGA 280


>gi|218961548|ref|YP_001741323.1| Type II restriction modification system, methylation subunit
           [Candidatus Cloacamonas acidaminovorans]
 gi|167730205|emb|CAO81117.1| Type II restriction modification system, methylation subunit
           [Candidatus Cloacamonas acidaminovorans]
          Length = 299

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 66/271 (24%), Positives = 109/271 (40%), Gaps = 27/271 (9%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
           K  +   EN     E+ +K+I G S   ++++P  SV L+   PPYN+  +         
Sbjct: 37  KKVIDKTENPFP-EEYLNKVILG-SAENMQEIPDNSVHLMITSPPYNVSKD--------- 85

Query: 64  LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW----VIGSYHNIF---RIGT 116
                   +DK  S   Y            RVL   G        IG    I     I  
Sbjct: 86  --------YDKNLSLRQYLELLENSFRETYRVLVNGGRACINVANIGRKPYIPLSDYISQ 137

Query: 117 MLQNLNFWILNDIVW-RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
           ++ N+ F +  +I+W + S+  P+     + +A   ++             +Y+  K   
Sbjct: 138 IMINIGFNMRGEIIWNKASSASPSTAWGSWMSATNPILRDIHEYILIFSKGDYNRNKKGK 197

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
           +    + D++    S          +  HP   PE L  R++   +   DIILDPF GSG
Sbjct: 198 QSTIRKEDFIEWTKSVWVMKAESAKKIGHPAPFPEELPYRLIQLYSFQDDIILDPFMGSG 257

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           T+   + K  R FIG E++  YI++  +RI+
Sbjct: 258 TTAISSLKSHRYFIGYEIEPAYIELCNRRIS 288


>gi|257459285|ref|ZP_05624399.1| DNA methylase [Campylobacter gracilis RM3268]
 gi|257443298|gb|EEV18427.1| DNA methylase [Campylobacter gracilis RM3268]
          Length = 222

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 97/248 (39%), Gaps = 34/248 (13%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   + +  +  +P   VDL+  DPPY +   G          +       +    E 
Sbjct: 4   NKIYNTDCLEFMRSMPDSCVDLVVTDPPYEIHTKGGGLGKRPVYENGALSKISQGFDAE- 62

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A L    R+ K    +++  S     RI       +  I  ++ W K N  P F
Sbjct: 63  ------ATLEQIARICKKI-NIFIFCSTKQKPRIMNWGYERDCNIA-ELAWYKPNAAP-F 113

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
               F++  E +I+                               I   S          
Sbjct: 114 TNNTFKSDLENIIYIREKGVK------------------------IKGISRLFTHNCGKS 149

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +  HPT+KP  ++ +++++++  GD+I DPF GSGT+ A  K+L R+FIG E++  Y +I
Sbjct: 150 KYGHPTEKPLEIIEKLILTASNEGDLIFDPFMGSGTTAAACKELNRNFIGCEIESKYCEI 209

Query: 261 ATKRIASV 268
           A KR+   
Sbjct: 210 AEKRLRKT 217


>gi|166364266|ref|YP_001656539.1| putative adenine-specific DNA-methyltransferase [Microcystis
           aeruginosa NIES-843]
 gi|166086639|dbj|BAG01347.1| putative adenine-specific DNA-methyltransferase [Microcystis
           aeruginosa NIES-843]
          Length = 317

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 66/303 (21%), Positives = 121/303 (39%), Gaps = 64/303 (21%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           + +G+S + ++ +P  SV LI   PPYNL  +                 ++K  S + Y 
Sbjct: 25  LYQGDSNNFIKTIPDNSVSLIITSPPYNLGKD-----------------YEKKISLDTYL 67

Query: 83  AFTRAWLLACRRVLKPNGTL-WVIGSYHNIFRIG-------TMLQNLNFWILNDIVWRKS 134
                 +    R+L+ NG++ W +G++     +         + + + F++ N IVW   
Sbjct: 68  ETQTKIMREFSRILQDNGSICWQVGNFVQEGEVYPLDIFYYQLFKQMGFFLRNRIVWHFG 127

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS------------ 182
           + +     +RF   +ET++W + +     Y FN D ++   +    R             
Sbjct: 128 HGLHTS--KRFSGRYETILWLTKTD---KYIFNLDPVRIPAKYPGKRHFKGKNIGKPSGN 182

Query: 183 ---------------DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
                          +W   +        N   + +HP Q P  L+ R +++ T  GD +
Sbjct: 183 PLGKNPSDVWEFLAQEWDELLWDIPNVKSNHPEKTIHPCQYPIELVERCVLALTNEGDWV 242

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA-------SVQPLGNIELTVLT 280
            DPF G GTS   +    R  +G E + +Y+ IA +RIA        ++PLG        
Sbjct: 243 FDPFAGVGTSLIASIMHNRRVMGSEKEAEYVKIAQERIAAYLQGNLKIRPLGKPIHQPTG 302

Query: 281 GKR 283
            ++
Sbjct: 303 QEK 305


>gi|219855690|ref|YP_002472812.1| hypothetical protein CKR_2347 [Clostridium kluyveri NBRC 12016]
 gi|219569414|dbj|BAH07398.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 347

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 105/265 (39%), Gaps = 41/265 (15%)

Query: 20  KDKIIKGNS-----ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           + +++ G+S       VL  +  K+ +L+  DPPYN+   G   +  +            
Sbjct: 100 QHRLVCGDSTKKDTFDVL--MDGKTANLVVTDPPYNVNYEGTAGKIKN-----------D 146

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
             + EA+  F  A        +  + +++V  +            +  F++    +W+K 
Sbjct: 147 NMANEAFYDFLLAAFQNTEAAMAKDASIYVFHADTEGLNFRRAFSDAGFYLSGTCIWKKQ 206

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           + +       +Q  HE +++         +  +                    I    + 
Sbjct: 207 SLV--LGRSPYQWQHEPILFGWKKKGKHNWYSDRKQTT---------------IWEFEKP 249

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            +N D    HPT KP AL++  +++S+    I+LDPF GSG++    ++  R    IE+ 
Sbjct: 250 KKNSD----HPTMKPVALVAYPILNSSLSNCIVLDPFGGSGSTLIACEQTDRICYTIELD 305

Query: 255 QDYIDIATKRIASVQPLGNIELTVL 279
           + Y D+  KR   ++ +GN +   L
Sbjct: 306 EKYCDVIVKRY--IEQVGNSDGVFL 328


>gi|328885682|emb|CCA58921.1| DNA methylase [Streptomyces venezuelae ATCC 10712]
          Length = 251

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 66/267 (24%), Positives = 106/267 (39%), Gaps = 33/267 (12%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQ------LNGQLYRPDHSLVDA---VTDSWD 73
           +  G+++ VL  LP   VD +  DPPYN           +  R  ++  DA   + D   
Sbjct: 5   LHHGDALGVLAGLPDDCVDAVITDPPYNSGGRTAKERTSRTARQKYTSADAGHELADFPG 64

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           +     +Y  +    +    R+ KP GT  +   +  +      +Q   +     + W K
Sbjct: 65  ENMDQRSYGFWLTQIMTEAHRLTKPGGTALLFTDWRQLPVTTDAIQAAGWLWRGVLAWHK 124

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
               P     RF+ + E ++WAS           Y                 +P    + 
Sbjct: 125 PQARPQ--KGRFKQSCEFIVWASNGAIDGSRNPVY-----------------LPGLYSAS 165

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           +   K   + H TQKP  ++ R LV  + PG  +LD   GSG++G  A    R FIG+E 
Sbjct: 166 QPSGKA--RQHITQKPVEVM-RELVKISPPGGTVLDFTCGSGSTGVAALLEGRDFIGVEK 222

Query: 254 KQDYIDIATKRIASV--QPLGNIELTV 278
            + Y +IA+ R+     Q LG   LT+
Sbjct: 223 TRHYAEIASDRLTETLHQTLGQDNLTL 249


>gi|159899275|ref|YP_001545522.1| DNA methylase N-4/N-6 domain-containing protein [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159892314|gb|ABX05394.1| DNA methylase N-4/N-6 domain protein [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 311

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 68/287 (23%), Positives = 117/287 (40%), Gaps = 57/287 (19%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           + +G+ ++ L+ +P++S+D++FADPP+NL  N                  D+    E Y 
Sbjct: 28  LYQGDCLNFLQAIPSESIDMVFADPPFNLGKNYG------------KGINDQLLDAE-YL 74

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            ++ +W+    R++KP G + +      +   G+ L        + I  R     P  RG
Sbjct: 75  EWSYSWISELIRIIKPGGAILLFNLPKWLISYGSYLNQAGMMFRHWIACRMPKAFP--RG 132

Query: 143 RRFQNAHETLIWASPSP---KAKGYTFNYDALKAANE--DVQMRSDWLIP-------ICS 190
           ++   AH  L++ +        K Y           E  D       L P       I  
Sbjct: 133 KKLSPAHYGLLYYTKGEPSTFNKVYIPIPVCRHCGKEIRDYGGHRKKLNPQGLNLMDIFD 192

Query: 191 GSERLRNKDGEKLH----------------PTQKPEA------------LLSRILVSSTK 222
             E +   +  + H                PT +               +L R++  +T 
Sbjct: 193 MPEEVWCDESLEAHSTNQLWTPAEDLWDDIPTVRHSKHKTRGANELAPIMLERLIALTTN 252

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           P D+ILDPF GSGT+   A+KL+R +IGIE+ +  ID A +R+ ++ 
Sbjct: 253 PHDLILDPFGGSGTTYYAAEKLQRRWIGIEIGE--IDPAIQRLQNLH 297


>gi|153955267|ref|YP_001396032.1| DNA methylase [Clostridium kluyveri DSM 555]
 gi|146348125|gb|EDK34661.1| DNA methylase [Clostridium kluyveri DSM 555]
          Length = 413

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 105/265 (39%), Gaps = 41/265 (15%)

Query: 20  KDKIIKGNS-----ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           + +++ G+S       VL  +  K+ +L+  DPPYN+   G   +  +            
Sbjct: 166 QHRLVCGDSTKKDTFDVL--MDGKTANLVVTDPPYNVNYEGTAGKIKN-----------D 212

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
             + EA+  F  A        +  + +++V  +            +  F++    +W+K 
Sbjct: 213 NMANEAFYDFLLAAFQNTEAAMAKDASIYVFHADTEGLNFRRAFSDAGFYLSGTCIWKKQ 272

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           + +       +Q  HE +++         +  +                    I    + 
Sbjct: 273 SLV--LGRSPYQWQHEPILFGWKKKGKHNWYSDRKQTT---------------IWEFEKP 315

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            +N D    HPT KP AL++  +++S+    I+LDPF GSG++    ++  R    IE+ 
Sbjct: 316 KKNSD----HPTMKPVALVAYPILNSSLSNCIVLDPFGGSGSTLIACEQTDRICYTIELD 371

Query: 255 QDYIDIATKRIASVQPLGNIELTVL 279
           + Y D+  KR   ++ +GN +   L
Sbjct: 372 EKYCDVIVKRY--IEQVGNSDGVFL 394


>gi|295097803|emb|CBK86893.1| DNA modification methylase [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 230

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 62/249 (24%), Positives = 103/249 (41%), Gaps = 43/249 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I G+ + V+ + PA++VD I  DPPY +    +  R   +L    +  W + +  E Y
Sbjct: 3   RFILGDCVQVMSRFPARAVDFILTDPPYLVGYKDRTGR---TLAGDNSSEWLQPACHEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +    +++         +   F ++  IV+ KS      F
Sbjct: 60  ------------RVLKNDSLMVSFYAWNRADLFLNAWKTAGFRVVGHIVFAKSYASKSTF 107

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G   ++A+                          +      D  IP     +      G
Sbjct: 108 VGYTHESAY-----------------------LLAKGRPQTPDRPIPDVIPWKYT----G 140

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            + HPT+KP   L  ++ S T+PG I+LDPF GSG++   A +  R +IGIEM + Y   
Sbjct: 141 NRHHPTEKPVQSLRPLIESLTRPGAIVLDPFAGSGSTCVAAAEASRRYIGIEMLEQYHAA 200

Query: 261 ATKRIASVQ 269
             +R+A V+
Sbjct: 201 GVRRLAQVE 209


>gi|319757806|gb|ADV69748.1| prophage LambdaW4, DNA methylase [Streptococcus suis JS14]
          Length = 417

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 101/259 (38%), Gaps = 35/259 (13%)

Query: 20  KDKIIKGNSISVL---EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K ++I G+S       + L  K V+L+  DPPYN  +     +  +          D   
Sbjct: 171 KHRVICGDSTKAETYDQLLGDKKVNLVVTDPPYNCDVEKTAGKIQN----------DNMG 220

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E Y  F  A        ++ + +++V  +           ++  F++    +W+K++ 
Sbjct: 221 DSEFY-QFLLAMFTQVENHMEADASIYVFHADTEGLNFRKAFKDAGFYLSGCCIWKKNSL 279

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +       +Q  HE +++         +            D +  + W       S    
Sbjct: 280 V--LGRSPYQWRHEPVLYGWRQKGKHQWF----------SDRKQTTIWEYDRPKSS---- 323

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                K HPT KP  L++  + +S+  G ++LDPF GSG++   A +  R   GIE+ + 
Sbjct: 324 -----KDHPTMKPIQLMAYPIQNSSMRGTLVLDPFLGSGSTLIAADQTGRICYGIELDEK 378

Query: 257 YIDIATKRIASVQPLGNIE 275
           ++D+  KR        ++ 
Sbjct: 379 FVDVIVKRYMEATDNTDVT 397


>gi|78046666|ref|YP_362841.1| site-specific DNA-methyltransferase (cytosine-N(4)-specific)
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78035096|emb|CAJ22741.1| Site-specific DNA-methyltransferase (cytosine-N(4)-specific)
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|82504508|gb|ABB80542.1| XveII methyltransferase [Xanthomonas euvesicatoria]
          Length = 299

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 73/307 (23%), Positives = 117/307 (38%), Gaps = 65/307 (21%)

Query: 7   LAINENQNSIFEWKD---------KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQL 57
           L +NEN+       D         +++ G++  VL  +  KS       PPY    +   
Sbjct: 3   LIVNENEPDTSTHTDEPIQEPARGRLVVGDARKVLAGMADKSFQCCITSPPYWGLRDY-- 60

Query: 58  YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW-VIGS--------Y 108
                     V        + EAY     A     RR L+ +GTLW  IG         +
Sbjct: 61  ---------GVDGQIGAEPTLEAYIEDLVALFREVRRTLRDDGTLWLNIGDGFTSGGRTW 111

Query: 109 HNI----------------------------FRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                                          +R+   LQ   +++  DI+W+K N  P  
Sbjct: 112 RAPDKKNKGRAMEYRAPTPDGLKPKDLIGVPWRLAIALQADGWYLRADIIWQKPNCQPES 171

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
              R   +HE +   +    ++ Y +N DA+K    D +   +           +  +  
Sbjct: 172 VKDRPTRSHEYVFLLTK---SERYYYNSDAVKELTADGKHTKNRR-----SVWAINTEPY 223

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
              H    P  L+   + + +K  +++LDPFFGSGT G VA+   R F+GIE+  DY ++
Sbjct: 224 GGNHFAVFPTELVRLCMEAGSKKEEVVLDPFFGSGTVGQVARDNGRKFVGIELSPDYAEL 283

Query: 261 ATKRIAS 267
           A KR+AS
Sbjct: 284 ARKRLAS 290


>gi|326784622|ref|YP_004324887.1| DNA adenine methylase [Prochlorococcus phage P-SSM7]
 gi|310004655|gb|ADO99047.1| DNA adenine methylase [Prochlorococcus phage P-SSM7]
          Length = 323

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 65/329 (19%), Positives = 115/329 (34%), Gaps = 81/329 (24%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +D I+ G+    L++   +   +    PPY    +               D   +  + E
Sbjct: 2   RDTILFGDCRQTLKEF-DEKARMCVTSPPYYGLRDY----------GGENDQIGQEQTPE 50

Query: 80  AYDAFTRAWLLACRRVLKPNGTLW-VIGSYHNIFR------------------------- 113
            +           R VL  +GT W  +G  +  +R                         
Sbjct: 51  EFIEQLVNVFKEVRNVLTDDGTCWVNLGDSYYNYRPGKGQGLAKQTVSNTKQDLPDVCPR 110

Query: 114 -------------------IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
                                  ++   +++  DI+W K NPMP     R   +HE +  
Sbjct: 111 RGNRLEGLKEKDLIGIPWMFAFAMRADGWYLRQDIIWHKPNPMPESVKDRCTKSHEYIFL 170

Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS---------------------GSE 193
            S +   K Y ++ +++K   +D   R        +                        
Sbjct: 171 FSKN---KKYFYDNESIKEPAKDWGTRDRSKGKYHNEGTGLQPHSGLTKSYPTKNKRSVW 227

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
            + NK   + H    P  L+   +++ ++ GDI+LDPF GSGT+ AVAK L R +IG E+
Sbjct: 228 SVTNKPYREAHFATYPPDLIEPCILAGSEKGDIVLDPFMGSGTTAAVAKSLGRDYIGCEL 287

Query: 254 KQDYIDIATKRIASVQ-PLGNIELTVLTG 281
            + Y D+  +R++    P+  +    LT 
Sbjct: 288 HEKYGDLIRQRVSEYHVPIEEVSQNGLTD 316


>gi|42779473|ref|NP_976720.1| DNA methylase, family protein [Bacillus cereus ATCC 10987]
 gi|42735389|gb|AAS39328.1| DNA methylase, family protein [Bacillus cereus ATCC 10987]
          Length = 413

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 53/273 (19%), Positives = 109/273 (39%), Gaps = 41/273 (15%)

Query: 20  KDKIIKGNS-----ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           + +++ G+S       VL  +  K+ +L+  DPPYN+   G   +  +            
Sbjct: 166 QHRLVCGDSTKKDTFDVL--MDGKAANLVVTDPPYNVNYEGTAGKIKN-----------D 212

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
             + EA+  F  A        +  + +++V  +            +  F++    +W+K 
Sbjct: 213 NMANEAFYDFLLAAFQNTEAAMAKDASIYVFHADTEGLNFRRAFSDAGFYLSGTCIWKKQ 272

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           + +       +Q  HE +++         +         ++       ++  P  +G   
Sbjct: 273 SLV--LGRSPYQWQHEPVLFGWKKKGKHLWY--------SDRKQTTIWEFEKPKKNGD-- 320

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                    HPT KP AL++  +++S+    I+LDPF GSG++    ++  R    IE+ 
Sbjct: 321 ---------HPTMKPVALVAYPIMNSSLSNCIVLDPFGGSGSTLIACEQTDRICYTIELD 371

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
           + Y D+  KR   ++ +GN +   L   R + R
Sbjct: 372 EKYCDVIVKRY--IEQVGNSDGVFLLRDRLKFR 402


>gi|313575369|emb|CBR26898.1| hypothetical protein [Streptococcus phage phi-SsUD.1]
          Length = 442

 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 57/268 (21%), Positives = 110/268 (41%), Gaps = 37/268 (13%)

Query: 20  KDKIIKGNSI--SVLEKL-PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K ++I G+S    + ++L   K  +L+  DPPYN+ +     +  +          D   
Sbjct: 195 KHRVICGDSTKAEIYDQLLGDKKANLVVTDPPYNVDVEETAGKILN----------DNMP 244

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E Y  F         + ++ + +++V  +           ++  F++    +W+K++ 
Sbjct: 245 DSEFY-QFLFDMFTQVEKHIESDASIYVFHADTEGLNFRKAFKDAGFYLSGCCIWKKNSL 303

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +       +Q  HE  ++         +            D +  + W       S    
Sbjct: 304 V--LGRSPYQWQHEPCLFGWKQKGKHQWF----------SDRKQTTIWEYDRPKSS---- 347

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                K HPT KP  L++  + +S+  G I+LDPF GSG++   A +  R   GIE+ + 
Sbjct: 348 -----KDHPTMKPIPLMAYPIQNSSMRGTIVLDPFLGSGSTLIAADQTGRVCYGIELDEK 402

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRT 284
           ++D+  KR   ++  GN  +TVL   +T
Sbjct: 403 FVDVIVKRY--IESTGNDNVTVLRDGQT 428


>gi|148543440|ref|YP_001270810.1| DNA methylase N-4/N-6 domain-containing protein [Lactobacillus
           reuteri DSM 20016]
 gi|184152848|ref|YP_001841189.1| hypothetical protein LAR_0193 [Lactobacillus reuteri JCM 1112]
 gi|227363589|ref|ZP_03847706.1| adenine-specific methyltransferase [Lactobacillus reuteri MM2-3]
 gi|325681783|ref|ZP_08161302.1| DNA (cytosine-5-)-methyltransferase domain protein [Lactobacillus
           reuteri MM4-1A]
 gi|148530474|gb|ABQ82473.1| DNA methylase N-4/N-6 domain protein [Lactobacillus reuteri DSM
           20016]
 gi|183224192|dbj|BAG24709.1| hypothetical protein [Lactobacillus reuteri JCM 1112]
 gi|227071385|gb|EEI09691.1| adenine-specific methyltransferase [Lactobacillus reuteri MM2-3]
 gi|324978874|gb|EGC15822.1| DNA (cytosine-5-)-methyltransferase domain protein [Lactobacillus
           reuteri MM4-1A]
          Length = 319

 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 79/289 (27%), Positives = 125/289 (43%), Gaps = 43/289 (14%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
           I    +++    +KII G+S  V+ +L    VDL   DPPYNL                 
Sbjct: 24  IIHPTDNLQTISNKIINGDSFKVMTQLAPHQVDLALIDPPYNLNKQY------------- 70

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
                K  S   Y  +T+ W+   + +LK N +++V   +     +  +L+  NF I N 
Sbjct: 71  DGLNFKKMSTSQYQTYTQKWIDLLKPLLKENASIYVFSDWATSMALAPILEK-NFTIQNR 129

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN--------------------- 167
           I W++     + +   ++N  E + + + +P    YTFN                     
Sbjct: 130 ITWQREKGRGSQKN--WKNGMEDIWFLTANPS--DYTFNVDQVKQRRQVVAPYRQDGVAK 185

Query: 168 -YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
            + A K  N    M S++   I   S    +      HPTQKPE LL++I+++S+ P D 
Sbjct: 186 DWQATKNGNFRDTMPSNFWDDI---SIPYWSMPENTGHPTQKPEKLLAKIILASSNPNDF 242

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           I DPF GSG+S   A KL R ++GIE    Y      R+  V+   +I+
Sbjct: 243 IFDPFAGSGSSLVTAAKLNRRYLGIEQSLLYCAWGQYRLNQVKDDPSIQ 291


>gi|325268609|ref|ZP_08135239.1| DNA (cytosine-5-)-methyltransferase [Prevotella multiformis DSM
           16608]
 gi|324989137|gb|EGC21090.1| DNA (cytosine-5-)-methyltransferase [Prevotella multiformis DSM
           16608]
          Length = 441

 Score =  155 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 101/257 (39%), Gaps = 32/257 (12%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           ++++ G+      ++  +  +  D+I  DPPYN+   G          D++ +       
Sbjct: 192 NRLMCGDCRSKKDIVTLMNGRVADMILTDPPYNVNYEGGGDSKLKIQNDSMEN------- 244

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            + +  F ++       ++K  G+ +V  +          ++   F I    +W K + +
Sbjct: 245 -DLFLRFLQSVFNVMFSIVKAGGSFYVFHADSEGENFRRAIREAGFKIAQCCIWVKDSLV 303

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
              +    Q  HE  ++               A    N D +  + W             
Sbjct: 304 MGRQDY--QWQHEPCLYGWKPG----------AAHFWNSDRKQTTIWNFDKPK------- 344

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
               ++HPT KP AL++  + +STK GDI++D F GSG++    ++  R   G+E+   Y
Sbjct: 345 --ANRIHPTMKPIALMAYPITNSTKNGDIVVDVFSGSGSTIMACQQTDRIGYGMEIDPKY 402

Query: 258 IDIATKRIASVQPLGNI 274
           +    +R  S+ P   I
Sbjct: 403 VSATVRRFMSMFPQQPI 419


>gi|303235921|ref|ZP_07322524.1| DNA (cytosine-5-)-methyltransferase [Prevotella disiens FB035-09AN]
 gi|302483794|gb|EFL46786.1| DNA (cytosine-5-)-methyltransferase [Prevotella disiens FB035-09AN]
          Length = 440

 Score =  155 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 103/258 (39%), Gaps = 32/258 (12%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           ++++ G+      V   +  +  D+I  DPPYN+   G          D +T   D   +
Sbjct: 191 NRLMCGDCRSTKDVQALMNGRLADMILTDPPYNVNYEG-------GNDDKMTIQNDSMEN 243

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            + +  F ++      +V+KP G+ +V  +          ++   F I    +W K N +
Sbjct: 244 -DLFFRFLKSVFDVMYKVVKPGGSYYVFHADSEGENFRRAIREAGFKIAQCCIWVKDNFV 302

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
              +    Q  HE  ++               A    N D +  + W             
Sbjct: 303 MGRQDY--QWKHEPCLYGWKKG----------AAHYWNSDRKQTTIWNFDKPK------- 343

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
               ++HPT KP AL++  + +STK G++I+D F GSG++    ++  R   G+E+   Y
Sbjct: 344 --ANRIHPTMKPIALMAYPITNSTKNGELIVDFFSGSGSTIMACQQTDRIGYGMEIDPKY 401

Query: 258 IDIATKRIASVQPLGNIE 275
           +    +R   + P   I+
Sbjct: 402 VTATVRRFMGMFPQQGIQ 419


>gi|188586728|ref|YP_001918273.1| DNA methylase N-4/N-6 domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351415|gb|ACB85685.1| DNA methylase N-4/N-6 domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 395

 Score =  155 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 66/260 (25%), Positives = 105/260 (40%), Gaps = 26/260 (10%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           E++++II  +S  +L K+P   +DL+F  PPYN  L                D+     +
Sbjct: 149 EYENQIICADSEQLLSKMPENCIDLVFTSPPYNFGLEY--------------DNHQDAMN 194

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWV-----IGSY-HNIFRIGTMLQNLNFWILNDIVW 131
           +  Y       L  C RV K  G + V        Y      I             +I+W
Sbjct: 195 WSIYFDKLYRILDECIRVTKYGGRIIVNVQPLFSDYIPIHHFISNFFIKKKLIWKAEILW 254

Query: 132 RKSNP----MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
            K+N           +   N +    W       KG        +  +   +   +W+  
Sbjct: 255 EKNNYNCKYTAWGSWKSPSNPYMKYTWEFLEVFCKGTMKKQGKKENIDISAEEFKEWVYG 314

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
             S +     K+ +  HP+  PE L  R++   +  GDIILDPF GSGT+  VA +  R 
Sbjct: 315 KWSIAPEKNMKNYK--HPSMFPEELARRVMKLFSYQGDIILDPFVGSGTTPVVAHQNNRR 372

Query: 248 FIGIEMKQDYIDIATKRIAS 267
           F+GI++ ++Y ++A KRI  
Sbjct: 373 FLGIDISREYCELARKRIDQ 392


>gi|91204082|emb|CAJ71735.1| similar to DNA-methyltransferase (cytosine-specific) [Candidatus
           Kuenenia stuttgartiensis]
          Length = 276

 Score =  155 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 63/288 (21%), Positives = 110/288 (38%), Gaps = 49/288 (17%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           I ++ +KII G+    L ++P+ SVDLI   PPY           D   +   T      
Sbjct: 3   INDFINKIIYGDIKEKLLQIPSNSVDLIVTSPPY----------ADKRKIIYNT------ 46

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIG--------SYHNIFRIGTMLQNLNFWILN 127
              E Y  +        +R+L  NG+  +           +  +  +   ++   +  + 
Sbjct: 47  IPAEKYVEWFMPITDELKRILNENGSFILNIKEKAENGERHTYVLELILEMKKQGWLWVE 106

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT---------------------- 165
           + +W K N  P     RF++A E  +  +   K K +                       
Sbjct: 107 EYIWHKKNCYPGKWPNRFRDAWERCLHFTKQKKFKMFQESVMIPIGDWVEERLKNLSERD 166

Query: 166 ---FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK 222
              F   +     +++    +      +    L  +   K H    P AL    +   T+
Sbjct: 167 KMRFESRSKSGFGKNISNWLNRDKVYPTNVLHLATECSNKNHSATFPVALPCWFIKLFTE 226

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
            GD++LDPF GSGT+     +L R +IGIE+K++Y  +A +RI + Q 
Sbjct: 227 EGDVVLDPFIGSGTTAIACLQLNRKYIGIEIKEEYYKLAIERIKNTQH 274


>gi|222053688|ref|YP_002536050.1| DNA methylase N-4/N-6 domain protein [Geobacter sp. FRC-32]
 gi|221562977|gb|ACM18949.1| DNA methylase N-4/N-6 domain protein [Geobacter sp. FRC-32]
          Length = 300

 Score =  155 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 74/308 (24%), Positives = 121/308 (39%), Gaps = 65/308 (21%)

Query: 1   MSQKNSLAINENQNSI-FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR 59
           M    ++   +NQ +I +     I+ G+    L +LP K        PPY    +     
Sbjct: 1   MHMIEAVETIQNQPAIDYNVPVNIVTGDVRQRLSELPEKMFRCCVTSPPYWGLRDY---- 56

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW-VIGSYHN-------- 110
                     D      + E Y +   A     RRVL  +GT W  IG  +         
Sbjct: 57  -------GAEDQIGSEMTVEEYISDLTAVFREVRRVLADDGTFWLNIGDSYTSGNRTWRD 109

Query: 111 ----------------------------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
                                        +++   LQ   +++ +DI+W K N  P    
Sbjct: 110 PDKKNPARGMTYRAPTPEGLKPKDLIGIPWKLAFALQLDGWYLRSDIIWNKPNCQPESVK 169

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM----RSDWLIPICSGSERLRNK 198
            R   +HE +   +    ++ Y +N++A++   +  +     R+ W I     SE     
Sbjct: 170 DRPTRSHEYVFLLTK---SEKYFYNWEAVREPAKTTKHYRSKRTVWDINTEPFSE----- 221

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                H    P  L+   L++ ++PGD ILDPFFGSGT G V  +L R  +G+E+K +Y+
Sbjct: 222 ----AHFAVFPPGLVEPCLMAGSEPGDFILDPFFGSGTVGVVCLRLGRKCVGVELKPEYV 277

Query: 259 DIATKRIA 266
           +IA KR+ 
Sbjct: 278 EIAKKRLQ 285


>gi|332522901|ref|ZP_08399153.1| DNA (cytosine-5-)-methyltransferase [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332314165|gb|EGJ27150.1| DNA (cytosine-5-)-methyltransferase [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 418

 Score =  155 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 55/268 (20%), Positives = 108/268 (40%), Gaps = 37/268 (13%)

Query: 20  KDKIIKGNSISVL---EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K ++I G+S       + L  K  +L+  DPPYN+ +     +  +          D  S
Sbjct: 171 KHRVICGDSTKAQTYDQLLGDKKANLVVTDPPYNVDVEETAGKILN----------DNMS 220

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             + Y  F           ++ + +++V  +           ++  F++    +W+K++ 
Sbjct: 221 DGDFY-QFLYDMFTQVESHMEADASIYVFHADTEGLNFRKAFKDAGFYLSGCCIWKKNSL 279

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +       +Q  HE  ++         +            D +  + W       S    
Sbjct: 280 V--LGRSPYQWQHEPCLFGWRQKGRHQWF----------SDCKQTTIWEYDRPKSS---- 323

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                K HPT KP  L++  + +S+  G ++LDPF GSG++   A +  R   GIE+ + 
Sbjct: 324 -----KDHPTMKPIQLMAYPIQNSSMRGTLVLDPFLGSGSTLMAADQTGRICYGIELDEK 378

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRT 284
           ++D+  KR   ++  GN ++ VL   +T
Sbjct: 379 FVDVIVKRY--MEATGNSDVKVLRNSQT 404


>gi|259502595|ref|ZP_05745497.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus antri DSM 16041]
 gi|259169410|gb|EEW53905.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus antri DSM 16041]
          Length = 408

 Score =  155 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 94/251 (37%), Gaps = 35/251 (13%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K  ++ G++    S  + L    V+L+  DPPYN+  + +  +  +              
Sbjct: 164 KHTLLCGDATKTESYQKLLGDHKVNLVLTDPPYNVDYSSKAGKIKN-----------DHQ 212

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           + + +  F  A      + +  + +++V  +           Q+  F++    +W+K + 
Sbjct: 213 ADDKFYQFLLAAFQNMNQAIANDASIYVFHADTEGLNFRRAFQDAGFYLSGCCIWKKQSL 272

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +       +Q  HE +++         +              +  + W       S    
Sbjct: 273 V--LGRSPYQWQHEPVLYGWKKDGKHEWY----------TGRKESTIWEFDRPKQS---- 316

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                K HPT KP  LL+  +++ST     +LDPF GSG++    ++  R    +E+   
Sbjct: 317 -----KEHPTMKPIPLLAYPIMNSTMSNCTVLDPFGGSGSTLIACEQTNRICYMMELDPK 371

Query: 257 YIDIATKRIAS 267
           Y D+  +R   
Sbjct: 372 YCDVIVQRYIE 382


>gi|83748867|ref|ZP_00945878.1| adenine DNA methyltransferase-like protein [Ralstonia solanacearum
           UW551]
 gi|207743921|ref|YP_002260313.1| n-6 adenine-specific dna methylase; protein [Ralstonia solanacearum
           IPO1609]
 gi|83724433|gb|EAP71600.1| adenine DNA methyltransferase-like protein [Ralstonia solanacearum
           UW551]
 gi|206595323|emb|CAQ62250.1| probable n-6 adenine-specific dna methylase; protein [Ralstonia
           solanacearum IPO1609]
          Length = 293

 Score =  155 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 113/243 (46%), Gaps = 23/243 (9%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV----DAVTDSWDKFSSFEAYDAFTRA 87
           L  +P+  VDL+  DPPY +    +L +    +V       +D  D +++ + Y  + + 
Sbjct: 24  LAAVPSNFVDLVLTDPPYGIADGAKLTKKGSKIVTTQQAWGSDFKDSWATIDQYYQWLKP 83

Query: 88  WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQ 146
           ++    RV+K NG++ +         I   L+ + +    N + ++K NP+P+ R   ++
Sbjct: 84  FIAEFVRVMKDNGSMILFLDRKYTGLIAHYLERDFDLNFKNKVYFKKKNPVPSIRKNNYR 143

Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
           +  E  +W +     K YTFN+ A         M   +  PI     +         HPT
Sbjct: 144 STIEEAVWFTKG---KEYTFNFGAQS------DMLQVYEGPIGKKKTQ---------HPT 185

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           +K   ++  ++ + +KPGD++LD F GS T+  VAK+  R  IG E      ++A  RI 
Sbjct: 186 EKYTWMVEPLIRNHSKPGDVVLDAFAGSATTLVVAKQQDRHAIGFEKSTALYEMAKARIE 245

Query: 267 SVQ 269
           + Q
Sbjct: 246 AEQ 248


>gi|288800806|ref|ZP_06406263.1| DNA (cytosine-5-)-methyltransferase [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288332267|gb|EFC70748.1| DNA (cytosine-5-)-methyltransferase [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 317

 Score =  155 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 73/316 (23%), Positives = 132/316 (41%), Gaps = 48/316 (15%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
           +  L++  +++S+ +  DK    +   V++  P    DLI  DPPYNL  +   ++    
Sbjct: 23  RKELSMLSDKSSVDDVIDKTFNQDLFDVIDFFPKHFADLIIIDPPYNLSKDFAGFKF--- 79

Query: 64  LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
                     K +   +Y ++ ++WL     +LKPNG+++V   + +   I  +L     
Sbjct: 80  ----------KATDDNSYISYIKSWLPKVLELLKPNGSVYVCCDWKSTSAIYQVLSE-YT 128

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM--- 180
            + N I W++           ++NA E + +       K Y F+ D++    +       
Sbjct: 129 IVKNRITWQREKGRGAKTN--WKNAMEDIWFGV--LNEKNYFFDVDSVMQKRKVFAPYKV 184

Query: 181 ---RSDWL--------IPICSGSE-----RLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
                DW         +   S           +      HPTQKPE L+++++++S   G
Sbjct: 185 DGTPKDWEETEEGNFRMTYPSNFWDDISVPYWSMSENTDHPTQKPEKLIAKLILASCPKG 244

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            ++ DPF GSGT+  VAKKL R + GIE  ++Y  +  KR+       NI+         
Sbjct: 245 GVVFDPFLGSGTTSVVAKKLGRHYCGIEFNEEYALLTQKRLNMADRNRNIQGYCD----- 299

Query: 285 EPRVAFNLLVERGLIQ 300
                  +  ER  ++
Sbjct: 300 ------GVFWERNTLK 309


>gi|153870455|ref|ZP_01999854.1| DNA methylase N-4/N-6 [Beggiatoa sp. PS]
 gi|152073077|gb|EDN70144.1| DNA methylase N-4/N-6 [Beggiatoa sp. PS]
          Length = 323

 Score =  155 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 69/302 (22%), Positives = 115/302 (38%), Gaps = 58/302 (19%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           M    ++   EN  S       +  G+   +L  LP  S+ LI   PPYNL         
Sbjct: 3   MQTVFNMKKIENHFSAKSEI-VLYHGDVNELLCTLPDNSISLIVTSPPYNLGK------- 54

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNIFRIG---- 115
                      ++K +S + Y       +    RVLK NG++ W +G++     +     
Sbjct: 55  ----------VYEKRTSIDQYLEIQTKVIKQLHRVLKENGSICWQVGNFVEKGEVYPLDI 104

Query: 116 ---TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
               + + LN  + N I+W   + +     +R    +ET++W +    ++ YTFN D ++
Sbjct: 105 FYYDIFKKLNLKLRNRIIWHFGHGLHTS--KRLSGRYETILWFTK---SEHYTFNLDPVR 159

Query: 173 AANEDVQMRS---------------------------DWLIPICSGSERLRNKDGEKLHP 205
             ++    R                            DW            N   + +H 
Sbjct: 160 VPSKYPGKRHYKGVNKGKPSGNPLGKNPSDVWEIVAQDWEEAFWEIPNVKSNHPEKTIHS 219

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
            Q P  L+ R +++ T   D + DP+ G GTS   A K  R  +G E +  YIDIA +R 
Sbjct: 220 CQYPIELVERCVLALTNENDWVFDPYAGVGTSLIAAIKHNRRAVGSEKRAQYIDIAHERF 279

Query: 266 AS 267
            +
Sbjct: 280 NA 281


>gi|229815289|ref|ZP_04445624.1| hypothetical protein COLINT_02335 [Collinsella intestinalis DSM
           13280]
 gi|229809069|gb|EEP44836.1| hypothetical protein COLINT_02335 [Collinsella intestinalis DSM
           13280]
          Length = 408

 Score =  155 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 94/255 (36%), Gaps = 28/255 (10%)

Query: 21  DKIIKGN--SISVLEKLPAKSV-DLIFADPPYNLQLNGQLY----RPDHSLVDAVTDSWD 73
            +I+ G+      +EKL      DL+  DPPYN+ L   +     +  H   D +    D
Sbjct: 166 HRIMCGDSTCREDVEKLGGGGFCDLLLTDPPYNVALGQHMRPSELKQLHRRTDGLVIEND 225

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
            +   +A+ AF ++       VL P    ++  +           +     +   +VW K
Sbjct: 226 SWDDDDAFVAFLKSAFDNAMEVLNPGAAFYIWHADSQRMNFLRACELSGMTVRECLVWAK 285

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
           +        + +Q  HE  ++      A  +  +         D                
Sbjct: 286 NTFA--LGRQDYQWRHEPCLYGWKDGAAHSWYSDRKQSTVLEFDKP-------------- 329

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
                     HPT KP  L++ ++ +STK GD +LD F GSG++    + + R  + +E+
Sbjct: 330 -----SVNAEHPTMKPVGLMAYLIRNSTKEGDTVLDVFGGSGSTLMACEGMGRRCLSMEL 384

Query: 254 KQDYIDIATKRIASV 268
              Y D+   R  + 
Sbjct: 385 DPHYCDVIITRWENA 399


>gi|152982010|ref|YP_001354391.1| phage related DNA methyltransferase [Janthinobacterium sp.
           Marseille]
 gi|151282087|gb|ABR90497.1| phage related DNA methyltransferase [Janthinobacterium sp.
           Marseille]
          Length = 423

 Score =  155 bits (393), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 96/249 (38%), Gaps = 34/249 (13%)

Query: 21  DKIIKGN-----SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
            +++ G+         L  L  + VD++F DPPYN+               A+ +     
Sbjct: 173 HRLLCGDSTKTECFEQL--LQGEQVDMVFTDPPYNVNYANTAKDKMRGTNRAILNDNLGD 230

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
             ++   A     +  CR      G ++V  S   +  + +  +         ++W K+ 
Sbjct: 231 GFYDFLLAALTPTIANCR------GGIYVAMSSSELDVLQSAFREAGGKWSTFVIWAKNT 284

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
                     Q  +E +++  P    + +            D      W I     ++  
Sbjct: 285 FTLGRSDY--QRQYEPILYGWPEGATRHWC----------GDRDQSDVWQIKKPHKND-- 330

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                  LHPT KP  L+ R + +S+ PG+++LDPF GSGT+   A+K  R    IE+  
Sbjct: 331 -------LHPTMKPVELVERAIRNSSHPGNVVLDPFGGSGTTLIAAEKSGRLARLIELDP 383

Query: 256 DYIDIATKR 264
            Y+D+  +R
Sbjct: 384 KYVDVIVRR 392


>gi|110598447|ref|ZP_01386718.1| DNA methylase N-4/N-6 [Chlorobium ferrooxidans DSM 13031]
 gi|110339897|gb|EAT58401.1| DNA methylase N-4/N-6 [Chlorobium ferrooxidans DSM 13031]
          Length = 368

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 72/299 (24%), Positives = 118/299 (39%), Gaps = 64/299 (21%)

Query: 12  NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
           N + + E   ++I G++  ++++LP  +   +   PPY    +             V + 
Sbjct: 85  NIDQLDEEGIQVINGDTRDIIKQLPDDTFRCVVTSPPYWGVRDY-----------GVENQ 133

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW-VIGSYHNI------------------- 111
                  + Y           RRVLK +GT W  IG+ +                     
Sbjct: 134 IGAEPDLQDYIKTLVEIFSEVRRVLKSDGTFWLNIGNTYTSGGRKWRQEDSKNRGRAMSY 193

Query: 112 -----------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
                            + +    Q   +++ NDI+W K N  P     R   AHE L  
Sbjct: 194 RPPTPDGLKKKDLIGVAWMVAMACQLDGWYLRNDIIWHKPNCQPESVKDRLTVAHEYLFM 253

Query: 155 ASPSPKAKGYTFNYDA----LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
            S S +   Y FN +A        N     R+ W I     +E          H    P+
Sbjct: 254 FSKSEQ---YYFNQEAIKESYTNGNGFKNKRTVWSINTEPCAE---------AHFAVFPK 301

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            L+   +++ ++  D+ILDPF+G+GT G V+++L R  +GIE+  DY+DI+ +R A VQ
Sbjct: 302 NLVRPCILAGSEENDLILDPFYGAGTVGIVSQELNRKCVGIEINPDYVDISGRRNARVQ 360


>gi|51596132|ref|YP_070323.1| DNA methyltransferase [Yersinia pseudotuberculosis IP 32953]
 gi|51589414|emb|CAH21036.1| putative DNA methyltransferase [Yersinia pseudotuberculosis IP
           32953]
          Length = 308

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 73/307 (23%), Positives = 110/307 (35%), Gaps = 74/307 (24%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I  G+ I  + K+P +SV      PPY    +             V        S  A+
Sbjct: 4   QIFIGDCIDSMRKMPDQSVHSCITSPPYYGLRDY-----------GVEGQIGLEESPAAF 52

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHN---------IFRIGTMLQNLNFWILNDIVWR 132
                A     RRVL+ +GTLWV                +R    LQN  + +  DI+W 
Sbjct: 53  IQRLVAVFREVRRVLRDDGTLWVNMGDSWDKGKQLNGMPWRFAFALQNDGWILRQDIIWH 112

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN----------------- 175
           KSNPMP     R   AHE +   S    +K Y F+++A++  +                 
Sbjct: 113 KSNPMPESVRDRCTKAHEYIFLLSK---SKSYYFDHEAIREPSVYSGKNTGVGFGHGMDK 169

Query: 176 ----------EDVQMRSD----WLIPICS--------------------GSERLRNKDGE 201
                      D   R D     +IP  +                        +  +  +
Sbjct: 170 SDRNRGRISARDNFKREDSKRAVVIPGQNVGTHRADRKDTVSDGMRAKRNVWTVATRGYK 229

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           + H    P AL+   +++    G +ILDPF GSGT+  VA    R  I  E+   Y ++ 
Sbjct: 230 EAHFATFPPALIEPCVLAGCPTGGVILDPFGGSGTTAGVAIGSGRKAILCELNPAYAELV 289

Query: 262 TKRIASV 268
             RI S+
Sbjct: 290 PARIESI 296


>gi|206901346|ref|YP_002250136.1| m4C-methyltransferase [Dictyoglomus thermophilum H-6-12]
 gi|206740449|gb|ACI19507.1| m4C-methyltransferase [Dictyoglomus thermophilum H-6-12]
          Length = 309

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 61/284 (21%), Positives = 108/284 (38%), Gaps = 45/284 (15%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           E  ++I    S   +E++P  S+ L+   PPYN+                    +D+  +
Sbjct: 53  EALNQIFCK-SSEKMEEIPDNSIHLMVTSPPYNVGK-----------------EYDENLT 94

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGS--------YHNIFRIGTMLQNLNFWILNDI 129
            + Y  F +       RVL P G + +  +          + + I  ML+ + F +  +I
Sbjct: 95  LKEYREFLKRVWKEVYRVLVPGGRVCINIANLGRKPYIPLHCYIIEDMLE-IGFLMRGEI 153

Query: 130 VWRKSNPMPNFRGRR---------FQNAHETLIWASPSPKAKGYTFNYDALKAANED-VQ 179
           +W K++                   ++ HE ++  S     +    N  +     E    
Sbjct: 154 IWNKASSASPSTAWGSWLSPANPTLRDIHEYILVFSKDTFTRKNLRNRKSTITKEEFLEF 213

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
            +S W  P  S          +  HP   P  L  R +   T  G+++LDPF GSG +  
Sbjct: 214 TKSVWTFPAESAK--------KIGHPAPFPIELPYRCIQLYTFEGEVVLDPFMGSGQTAI 265

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            A K +R +IG E+ + Y+++A +RI       NI        +
Sbjct: 266 AALKAKRFYIGYEINKVYVNLANRRIREFLSSQNILSLFEETNK 309


>gi|329848438|ref|ZP_08263466.1| modification methylase Cfr9I [Asticcacaulis biprosthecum C19]
 gi|328843501|gb|EGF93070.1| modification methylase Cfr9I [Asticcacaulis biprosthecum C19]
          Length = 359

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 77/379 (20%), Positives = 113/379 (29%), Gaps = 113/379 (29%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           M + NSL I                G    VL   P  SVD   + PPY      + YR 
Sbjct: 1   MKETNSLMIGGVSM---------YLGECRDVLRTFPDNSVDCCVSSPPY---YQLRDYR- 47

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW-VIGSYH---------- 109
                  V       +S +A+ A          RVLKP+GTLW  IG  +          
Sbjct: 48  -------VAGQIGLEASPQAFIAVLVEVFREVHRVLKPSGTLWINIGDSYASKPNGSIGA 100

Query: 110 -----------------------------------NIFRIGTMLQNLNFWILNDIVWRKS 134
                                                +R+   LQ   +++  DI+W K 
Sbjct: 101 TTLQGSRSSQSEYRRTNALRKTARPTGLKHKDLMGMPWRLAFALQEDGWYLRQDIIWNKL 160

Query: 135 NPMPNFRGRRFQNAHETLIWASP------------------------------------- 157
           NPMP     R   +HE +   S                                      
Sbjct: 161 NPMPESVEDRCTKSHEYIFLLSKSARYFFDQEAILEPCSPSTNPRFSQDIINQVGSARAN 220

Query: 158 -------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR---NKDGEKLHPTQ 207
                    KA G  F+  A++  + +       + P       +     +     H   
Sbjct: 221 GGTRATVPMKAVGRKFDPGAIRNKSNENFDSHLVVPPTKRNKRSVWSIGTRGFSGAHFAT 280

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            P  L+   +++    G I+LDPF GSGT+   A K  R  + I++  +Y  +A  RI  
Sbjct: 281 YPVELIEPCILAGCPAGGIVLDPFGGSGTTAIAAHKHGRKAVYIDLNPEYFALARDRIDK 340

Query: 268 VQPLGNIELTVLTGKRTEP 286
                N      T    +P
Sbjct: 341 ETSQANFFDRTDTSAEAQP 359


>gi|254193586|ref|ZP_04900019.1| DNA methylase [Burkholderia pseudomallei S13]
 gi|169650338|gb|EDS83031.1| DNA methylase [Burkholderia pseudomallei S13]
          Length = 286

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 61/258 (23%), Positives = 103/258 (39%), Gaps = 32/258 (12%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDAVT--- 69
           +    D++   +++++   LP  S+D++F DPPY    L  + +   P    +++ T   
Sbjct: 47  LSPLLDRLHAMDALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSEKYINSDTKAA 106

Query: 70  --DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
             D         A+  +  AWL  CRR LKP G L     +  +  +  ++Q     +  
Sbjct: 107 YVDFESDNMDQRAWAFWCHAWLSECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILRG 166

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
             VW K+      R   F    E ++W               A + A  D ++    + P
Sbjct: 167 IAVWDKTPGRTRPRRGGFAQQAEFVVW---------------ASRGAMRDCEVYLPGVFP 211

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                         K H T+KP   ++R +V     G ++ D F GSGT    A++    
Sbjct: 212 --------CRLPLPKQHVTEKPLD-IAREVVRLVPAGGVVCDLFAGSGTFLVAAREAGLH 262

Query: 248 FIGIEMKQDYIDIATKRI 265
           +IG E  Q Y  IA +R+
Sbjct: 263 WIGCETNQAYHAIAEQRL 280


>gi|262199051|ref|YP_003270260.1| DNA methylase N-4/N-6 domain protein [Haliangium ochraceum DSM
           14365]
 gi|262082398|gb|ACY18367.1| DNA methylase N-4/N-6 domain protein [Haliangium ochraceum DSM
           14365]
          Length = 319

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 68/282 (24%), Positives = 120/282 (42%), Gaps = 43/282 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW-DKFSSFE 79
           D++I  +++ V+++L    +DL++ DPP+     G+L R   +  DA   ++ D   + E
Sbjct: 25  DRLIHADNLKVMDELGDGCIDLVYIDPPFAT---GKLRRGREAADDAPALAFRDVPDNPE 81

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            + A+    L+ACRR+L  +G+L+V   Y  +  +   L  +               +  
Sbjct: 82  DFVAWLEPRLVACRRLLAGHGSLFVHLDYRTVHYVKVCLDRIFGRSRFVNEIIWCYSVGG 141

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS----------------- 182
              RRF   H+T++W + S     Y F  DA++   +                       
Sbjct: 142 KSRRRFARKHDTILWYTRSGD---YAFFPDAVRVPRKGGSHMRVVRDESGALVQEKTDRR 198

Query: 183 ----------------DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
                           DW   I   +   R + G    PTQKPE LL RI+ ++  P  +
Sbjct: 199 TGKVYRYPVAAGKIPEDWWADIELLNRGDRERTGW---PTQKPERLLERIIGATAGPDAV 255

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           + D F G+GT+ AVA++L R F+  ++    +  A +R+   
Sbjct: 256 VADWFCGAGTTAAVAQRLGRRFLTTDIASSAVACAEQRLEQA 297


>gi|227543560|ref|ZP_03973609.1| ParB family nuclease domain and DNA-modification methylase domain
           protein [Lactobacillus reuteri CF48-3A]
 gi|300909411|ref|ZP_07126872.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus reuteri SD2112]
 gi|227186400|gb|EEI66471.1| ParB family nuclease domain and DNA-modification methylase domain
           protein [Lactobacillus reuteri CF48-3A]
 gi|300893276|gb|EFK86635.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus reuteri SD2112]
          Length = 409

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 111/280 (39%), Gaps = 39/280 (13%)

Query: 20  KDKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           +  +  G++      +KL  K+ V+L+  DPPYN+    +  +  +              
Sbjct: 164 RHTLFCGDATKAESYQKLLGKTQVNLVLTDPPYNVDYQSKAGKIKN-----------DHQ 212

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           + + +  F         + +  + +++V  +           Q+  F++    +W+K + 
Sbjct: 213 ASDKFYQFLLDAFQNMNQAMADDASIYVFHADTEGLNFRRAFQDAGFYLSGCCIWKKQSL 272

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +       +Q  HE +++         +            D   +               
Sbjct: 273 V--LGRSPYQWQHEPVLYGWKKTGKHEWYTGRKESTIWEFDKPKK--------------- 315

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                K HPT KP  LL+  +++ST     +LDPF GSG++    ++ +R+   +E+ + 
Sbjct: 316 ----SKEHPTMKPIPLLAYPIMNSTMTNCTVLDPFGGSGSTLIACEQTKRTCFMMELDEK 371

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
           Y D+  KR   ++ +G+++   +  +R    + ++ +V+R
Sbjct: 372 YCDVIIKRY--IEQVGSVQDVSV--ERYGKTIPYSEVVKR 407


>gi|319641241|ref|ZP_07995940.1| hypothetical protein HMPREF9011_01537 [Bacteroides sp. 3_1_40A]
 gi|145308108|gb|ABP57294.1| hypothetical protein bst021 [Bacteroides uniformis]
 gi|317387114|gb|EFV67994.1| hypothetical protein HMPREF9011_01537 [Bacteroides sp. 3_1_40A]
          Length = 259

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 63/267 (23%), Positives = 92/267 (34%), Gaps = 39/267 (14%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            DKI   + +  + ++P  SVD I AD PY +   G                WD+     
Sbjct: 4   TDKIYNMDCLEGMSRMPEGSVDAIIADLPYGVLNRGNRSAC-----------WDRQIP-- 50

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                        RR++KP+  + +      IF    ML     W  N +  +       
Sbjct: 51  -----LGPLWEQYRRIIKPDSPIILFA--QGIFSAHLMLSQPGIWRYNLVWQKDRVTGHL 103

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL---- 195
              R     HE ++                  +  N    M        C G  +L    
Sbjct: 104 NANRMPLRQHEDILVFYMKQPVYHPQMTPCPPERRNHGRSMTEGSFTNRCYGEMKLVPVR 163

Query: 196 ---------------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
                           +K G   HPTQKP AL+  ++ + T  GD +LD   GSGT+   
Sbjct: 164 MADNKYPTSVIFIPKEHKTGAFYHPTQKPVALVEYLIRTYTDEGDTVLDNCIGSGTTAIA 223

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIAS 267
           A +  R +IG E  ++Y DIA  RI  
Sbjct: 224 AIRSGRHYIGFETVKEYCDIAELRIRE 250


>gi|293401144|ref|ZP_06645288.1| DNA (cytosine-5-)-methyltransferase [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305270|gb|EFE46515.1| DNA (cytosine-5-)-methyltransferase [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 415

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 46/253 (18%), Positives = 94/253 (37%), Gaps = 39/253 (15%)

Query: 20  KDKIIKGNSI-----SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
             ++  G+S       +L  +  K  +L+  DPPYN+   G   +  +  +D        
Sbjct: 166 THRLFCGDSTKAQSYEML--MAGKKANLVVTDPPYNVNYEGTAGKIQNDNMDN------- 216

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
               +++  F        ++ +  + +++V  +            +  F++    +W+  
Sbjct: 217 ----DSFYQFLFDAFTNMKQAMAEDASIYVFHADTEGLNFRKAFADAGFYLSGCCIWK-- 270

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
            P        +Q  HE  ++                   + +           I    + 
Sbjct: 271 KPSLVLGRSPYQWQHEPCLFGWK---------------KSGKHQWYSGRKETTIWEFEKP 315

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            +N D    HPT KP AL++  +++S+    I+LDPF GSG++    ++  R    IE+ 
Sbjct: 316 KKNAD----HPTMKPIALIAYPIMNSSMSNCIVLDPFGGSGSTLIACEQTGRICHTIELD 371

Query: 255 QDYIDIATKRIAS 267
           + Y D+  KR   
Sbjct: 372 EKYADVIVKRYIE 384


>gi|218962157|ref|YP_001741932.1| Similar to DNA modification methylase [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730814|emb|CAO81726.1| Similar to DNA modification methylase [Candidatus Cloacamonas
           acidaminovorans]
          Length = 375

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 67/286 (23%), Positives = 122/286 (42%), Gaps = 40/286 (13%)

Query: 1   MSQKNSLAINENQNSIFE-WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR 59
           + +  +  IN N+  + +  K  +I  +++  ++ LP KS+DL+  DPPYN+        
Sbjct: 59  LKKMKTRFINLNKQCMLDAIKGNVICQDALECIQFLPEKSIDLLIIDPPYNM-------- 110

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
                     +      + + Y  +  +W       +   G+++V   + +   I T+L+
Sbjct: 111 -----YKKFNEVTFNKKTIDEYAEWIDSWFSQIVSKISLTGSVYVCCDWQSSSAIETVLR 165

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
             +  + N I W +           ++N  E + +A+    +  Y FN D +K   + + 
Sbjct: 166 K-HLIVRNRITWERDKGRGAKTN--WKNCSEDIWFATK---SNKYVFNVDKVKIMRKVIA 219

Query: 180 MRSDWLIPICSGSE--------------------RLRNKDGEKLHPTQKPEALLSRILVS 219
              D         E                       +      HPTQKPE LL++++++
Sbjct: 220 PYRDENGDPKDWKETNTGNYRLSHPSNFWTDITIPFWSMPENTDHPTQKPEKLLAKLILA 279

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           S+  GD + DPF GSG++  VAKKL R F GIE+ + Y  +  KR+
Sbjct: 280 SSNEGDFVFDPFCGSGSTLVVAKKLNREFSGIEIDEYYCALTLKRL 325


>gi|295697913|ref|YP_003602570.1| DNA methylase family protein [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295060025|gb|ADF64762.1| DNA methylase family protein [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 230

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 59/249 (23%), Positives = 98/249 (39%), Gaps = 43/249 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I G+ + V+ + PA++VD I  DPPY +    +  R       A              
Sbjct: 3   RFILGDCVQVMSRFPARAVDFILTDPPYLVGYKDRTGRTLAGDNSA-------------- 48

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
             + +       RVLK +  +    +++         +   F ++  IV+ KS      F
Sbjct: 49  -EWLQPACHEMYRVLKNDSLMVSFYAWNRADLFLNAWKTAGFRVVGHIVFAKSYASKSTF 107

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G   ++A+                          +      D  IP     +      G
Sbjct: 108 VGYTHESAY-----------------------LLAKGRPQTPDRPIPDVIPWKYT----G 140

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            + HPT+KP   L  ++ S T+PG I+LDPF GSG++   A +  R +IGIEM + Y   
Sbjct: 141 NRHHPTEKPVQSLRPLIESLTRPGAIVLDPFAGSGSTCVAAAEASRRYIGIEMLEQYHAA 200

Query: 261 ATKRIASVQ 269
             +R+A V+
Sbjct: 201 GVRRLAQVE 209


>gi|150390344|ref|YP_001320393.1| DNA methylase N-4/N-6 domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149950206|gb|ABR48734.1| DNA methylase N-4/N-6 domain protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 424

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/273 (19%), Positives = 102/273 (37%), Gaps = 39/273 (14%)

Query: 20  KDKIIKGNSIS-----VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           + ++I G+S       +L  +  K  +L+  DPPYN+    +     +          D 
Sbjct: 180 RHRLICGDSTKEDTYKIL--MDGKKANLVVTDPPYNVAYEAKAGTIKN----------DD 227

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
             S + Y +F  A        ++ + +++V  +            +  F++    +W K 
Sbjct: 228 MKSDDFY-SFLLAAFKNMHSSMELDASIYVFHADTEGLNFRKSFVDAGFYLSGVCIWAKQ 286

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           + +       +Q  HE +++         +  +       N D   +SD           
Sbjct: 287 SIV--LGRSPYQWKHEPILFGWRKDGKHRWYSDRKQNTIWNFDRPTKSD----------- 333

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                   LHPT KP  L +  + +S+    IILDPF GSG++    ++  R    IE+ 
Sbjct: 334 --------LHPTMKPVELCAYPIQNSSMSNCIILDPFGGSGSTLMACEQTGRICYSIELD 385

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
           + Y D+  KR             + +G++T  +
Sbjct: 386 EKYTDVIVKRYIEYAGTDEDVFLIRSGEKTNYK 418


>gi|256847824|ref|ZP_05553269.1| DNA methylase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715513|gb|EEU30489.1| DNA methylase [Lactobacillus coleohominis 101-4-CHN]
          Length = 408

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 104/278 (37%), Gaps = 41/278 (14%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K  ++ G++    S  + L    V+L+  DPPYN+  + +  +  +              
Sbjct: 164 KHTLLCGDATKTESYQKLLGDHKVNLVLTDPPYNVDYSSKAGKIKN-----------DHQ 212

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           + + +  F  A      + +  + +++V  +           Q+  F++    +W+K + 
Sbjct: 213 ADDKFYQFLLAAFQNMNQAMANDASIYVFHADTEGLNFRRAFQDAGFYLSGCCIWKKQSL 272

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +       +Q  HE +++         +              +  + W       S    
Sbjct: 273 V--LGRSPYQWQHEPVLYGWKKDGKHEWY----------TGRKESTIWEFDRPKQS---- 316

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                K HPT KP  LL+  +++ST     +LDPF GSG++    ++  R    +E+   
Sbjct: 317 -----KEHPTMKPIPLLAYPIMNSTMSNCTVLDPFGGSGSTLIACEQTNRICYMMELDPK 371

Query: 257 YIDIATKR-IASVQPLGNIELTVLTGKRTEPRVAFNLL 293
           Y D+   R I  V    +I +     +R    + ++ L
Sbjct: 372 YCDVIVNRYIKQVNSDQDISV-----ERDGHIIPYSNL 404


>gi|227530252|ref|ZP_03960301.1| ParB family nuclease domain and DNA-modification methylase domain
           protein [Lactobacillus vaginalis ATCC 49540]
 gi|227349825|gb|EEJ40116.1| ParB family nuclease domain and DNA-modification methylase domain
           protein [Lactobacillus vaginalis ATCC 49540]
          Length = 417

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 94/251 (37%), Gaps = 35/251 (13%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K  ++ G++    S  + L    V+L+  DPPYN+  + +  +  +              
Sbjct: 164 KHTLLCGDAAKTESYQKLLGDHKVNLVLTDPPYNVDYSSKAGKIKN-----------DHQ 212

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           + + +  F  A      + +  + +++V  +           Q+  F++    +W+K + 
Sbjct: 213 ADDKFYQFLLAAFQNMNQAMANDASIYVFHADTEGLNFRRAFQDAGFYLSGCCIWKKQSL 272

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +       +Q  HE +++         +              +  + W       S    
Sbjct: 273 V--LGRSPYQWQHEPVLYGWKKDGKHEWY----------TGRKESTIWEFDRPKQS---- 316

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                K HPT KP  LL+  +++ST     +LDPF GSG++    ++  R    +E+   
Sbjct: 317 -----KEHPTMKPIPLLAYPIMNSTMSNCTVLDPFGGSGSTLIACEQTNRICYMMELDPK 371

Query: 257 YIDIATKRIAS 267
           Y D+  +R   
Sbjct: 372 YCDVIVQRYIE 382


>gi|167630911|ref|YP_001681410.1| DNA methylase, family protein [Heliobacterium modesticaldum Ice1]
 gi|167593651|gb|ABZ85399.1| DNA methylase, family protein [Heliobacterium modesticaldum Ice1]
          Length = 417

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 61/270 (22%), Positives = 110/270 (40%), Gaps = 30/270 (11%)

Query: 20  KDKIIKGNS---ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G+S   + V + +  K V  +F DPP+N+        P       + D      
Sbjct: 168 RHRLMCGDSALLLDVQKLMDGKKVRFVFTDPPWNVDYGSDTRHPSWKPRQILNDR----M 223

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           S E + AF        R V +     +V+ S      +  +L+   +   + I+W+K + 
Sbjct: 224 STEEFGAFLSRAFNCMREVSEAGCMTYVVMSAQEWGSLMNVLREAGYHWSSTIIWKKDSL 283

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           + + +    Q  +E +           Y +         +D +    W IP    SE   
Sbjct: 284 VLSRKDYHTQ--YEPIW----------YGWLEGTRLCPLKDRKQSDVWEIPRPKVSEE-- 329

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                  HPT KP +L+++ +++S+  GD+ LD F GSGT+   A++  R    +E+   
Sbjct: 330 -------HPTMKPVSLVAKAMLNSSHAGDLALDLFGGSGTTMIAAEQTGRVCFMMELDPK 382

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEP 286
           Y D+  KR   V   G+    +L G    P
Sbjct: 383 YCDVIAKRY--VSQFGDNAAFLLRGDEKIP 410


>gi|317503648|ref|ZP_07961665.1| site-specific DNA-methyltransferase (adenine-specific) [Prevotella
           salivae DSM 15606]
 gi|315665169|gb|EFV04819.1| site-specific DNA-methyltransferase (adenine-specific) [Prevotella
           salivae DSM 15606]
          Length = 319

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 82/285 (28%), Positives = 131/285 (45%), Gaps = 39/285 (13%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
           +K  +  N+ + S  +  + +I  +    L+ +P     LI  DPPYNL  +   +    
Sbjct: 24  EKAIINANDLKKSFAD--NSVINADLFDCLDVIPNDYFHLIIIDPPYNLAKD--FHGNKF 79

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
           S ++  +           Y+A+ R+W       L PNGTL++ G +     +  ++    
Sbjct: 80  SKLNTTS-----------YEAYLRSWFGKVCDKLVPNGTLYMCGDWQCSLSMQKVISE-R 127

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK------AANE 176
             ILN I W++           ++NA E + +A  +P  K Y F+ +A+K      A  +
Sbjct: 128 LTILNRITWQREKGRGAKAN--WKNAMEDIWFAVKNP--KDYYFDVEAVKMKRKVIAPYK 183

Query: 177 DVQMRSDWL--------IPICSGSE-----RLRNKDGEKLHPTQKPEALLSRILVSSTKP 223
                 DW         I   S           +      HPTQKPE L ++++++STKP
Sbjct: 184 VDGKPKDWEQTESGNFRITYPSNFWDDISIPFWSMPENTDHPTQKPEKLYAKLILASTKP 243

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           GD I DPF GSGTS  VA KL R+++GIE+ +DY   A KR+ + 
Sbjct: 244 GDKIFDPFLGSGTSAVVAYKLNRNYVGIELNRDYCLWAAKRLMNA 288


>gi|327198531|ref|YP_004327118.1| adenine-specific DNA methyltransferase [Pseudoalteromonas phage
           H105/1]
 gi|304367926|gb|ADM26685.1| adenine-specific DNA methyltransferase [Pseudoalteromonas phage
           H105/1]
          Length = 228

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 110/246 (44%), Gaps = 21/246 (8%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +++G+ +  ++++ + SVDL+  DPPY+++      +    L  ++    D+       +
Sbjct: 4   LMRGDCLERMKEIESGSVDLVLVDPPYDIKNTKAGGKS--KLAKSMQVMNDQIREANIVN 61

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F    L    RV K N  +++  +   +               + I W K+N MP +  
Sbjct: 62  GFDELILDELVRVNK-NINMYIFCNKAQLPMYMKYFVMERGCSFDLIKWVKTNAMPTYNN 120

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +   +  E   +A          ++  +             +  PI    ++  N     
Sbjct: 121 KYL-SDTEYCFYARKRGYCNPENYSDASTL-----------YSAPINIKDKKKFN----- 163

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPT KP  LL R++ +S+K GD ILD F GSG++G  AK L R+FIGIE+ ++Y +IA 
Sbjct: 164 -HPTIKPIPLLERLIRNSSKEGDNILDCFMGSGSTGVAAKNLNRNFIGIELDENYFNIAK 222

Query: 263 KRIASV 268
           +RI   
Sbjct: 223 ERIEKA 228


>gi|116630103|ref|YP_815275.1| ParB-like nuclease domain-containing protein [Lactobacillus gasseri
           ATCC 33323]
 gi|238854138|ref|ZP_04644485.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus gasseri 202-4]
 gi|116095685|gb|ABJ60837.1| ParB-like nuclease domain and DNA modification methylase domain
           [Lactobacillus gasseri ATCC 33323]
 gi|238833214|gb|EEQ25504.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus gasseri 202-4]
          Length = 408

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 105/277 (37%), Gaps = 39/277 (14%)

Query: 20  KDKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           +  +  G++       + L    V+L+  DPPYN+    +  +  +   D          
Sbjct: 164 RHTLFCGDATKGEGYQKLLGDHKVNLVLTDPPYNVDYQSKAGKIKNDHQDD--------- 214

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             + +  F  A      +V+  + +++V  +           ++ +F++    +W+K + 
Sbjct: 215 --DKFYQFLLAAFQNMNKVMANDASIYVFHADTEGLNFRRAFRDADFYLSGCCIWKKQSL 272

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +       +Q  HE +++         +              +  + W       S    
Sbjct: 273 V--LGRSPYQWQHEPVLYGWKQDGKHEWY----------TGRKESTIWEFDRPKQS---- 316

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                K HPT KP  LL+  +++ST     +LDPF GSG++    ++  R    +E+   
Sbjct: 317 -----KEHPTMKPVPLLAYPIMNSTMSNCTVLDPFGGSGSTLIACEQTNRICYMMELDPK 371

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
           Y D+   R   ++ +G+ +   +  +R    + +N L
Sbjct: 372 YCDVIVNRY--IEQVGSDQEVSV--ERVGHIIPYNKL 404


>gi|308175023|ref|YP_003921728.1| Modification methylase BamHI; M.BamHI; N [Bacillus
           amyloliquefaciens DSM 7]
 gi|307607887|emb|CBI44258.1| Modification methylase BamHI; M.BamHI; N [Bacillus
           amyloliquefaciens DSM 7]
 gi|315000321|emb|CAA38998.2| BamH I methylase [Bacillus amyloliquefaciens]
 gi|328554992|gb|AEB25484.1| Modification methylase BamHI; M.BamHI; N [Bacillus
           amyloliquefaciens TA208]
 gi|328913347|gb|AEB64943.1| Modification methylase BamHI; M.BamHI; N [Bacillus
           amyloliquefaciens LL3]
          Length = 423

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 76/284 (26%), Positives = 120/284 (42%), Gaps = 39/284 (13%)

Query: 1   MSQKNSLAINENQNSIFEWKD-------KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
           +  KNS+ +NE  NSI E K        K+  G+ + + +++P ++VD IFADPP+NL  
Sbjct: 93  LENKNSVKLNE-FNSIQEIKPYFYTDLGKLYNGDCLELFKQVPDENVDTIFADPPFNLDK 151

Query: 54  NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
                  D +             SF  Y  +   W+  C RVLKP G+L++         
Sbjct: 152 EYDEGVTDKN-------------SFSGYLDWYYKWIDECIRVLKPGGSLFIYNIPKWNTY 198

Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
           +   L N      N I       +P     R   A+ +L++     K K +      L+ 
Sbjct: 199 LSEYL-NRKLNFRNWITVDMKFGLPIQ--NRLYPANYSLLYYVKGDKPKTFNVQRIPLQT 255

Query: 174 ANEDVQMRSDW-------------LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
                +   D+             L  + S    +R+   +     +    LL RI+  S
Sbjct: 256 CPHCGREIKDYGGYKNKMNPKGVTLSDVWSDIYPVRHSSSKNRKFNELSVKLLDRIITMS 315

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           T  GD++LDPF GSGT+ AV++ L R +IG E+     +I  +R
Sbjct: 316 TNEGDVVLDPFGGSGTTFAVSEMLGRKWIGFELGN--CEIIKER 357


>gi|209543239|ref|YP_002275468.1| DNA methylase N-4/N-6 domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530916|gb|ACI50853.1| DNA methylase N-4/N-6 domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 223

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 63/258 (24%), Positives = 104/258 (40%), Gaps = 43/258 (16%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
           + +++N  F  ++ I  G+S+S++  +P  SVD I  DPPY +   G+  R   +  +A 
Sbjct: 1   MTDSENGAF--RNVIRHGDSVSLMRAMPRGSVDFILTDPPYLVGYQGRDGRTVRNDDNA- 57

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
                         A+ R       RVLK  G      S+  +       +   F ++  
Sbjct: 58  --------------AWLRPAFSQMHRVLKEGGFAVSFYSWTKVHLFVDAWRAAGFRVVGH 103

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
           +V+RKS        R  + +HE     +            D +                 
Sbjct: 104 LVFRKSYASS---ARFLRYSHEQAYLLAKGDAKLPRQPIPDVIDMPY------------- 147

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
                      G KLHPTQKP A L  ++ +    G I  DPF GSG+S   A+ L R +
Sbjct: 148 ----------SGNKLHPTQKPVAALLPLVHAFCPVGGITFDPFCGSGSSLVAAQHLGRDW 197

Query: 249 IGIEMKQDYIDIATKRIA 266
           +G+E+ + +   A++R+A
Sbjct: 198 LGMELDETHAATASRRLA 215


>gi|154174237|ref|YP_001407809.1| DNA methylase [Campylobacter curvus 525.92]
 gi|153793065|gb|EAU00023.2| DNA methylase [Campylobacter curvus 525.92]
          Length = 309

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 117/291 (40%), Gaps = 48/291 (16%)

Query: 5   NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL 64
           N + I+E  N     K  +  G+ + +L+K+P +  DLI   PPY +   G+ Y   H  
Sbjct: 2   NKIKISEKFN--MSNKVTVFNGDCLKLLQKIPDEFCDLIITSPPYCM---GKAYENIHDD 56

Query: 65  VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHN-------IFRIGT 116
           ++   +   + + F+              RVLK  G+L W IG + N        F I  
Sbjct: 57  IETFKNQ--QITIFDD-----------IYRVLKVGGSLCWQIGYHVNKLELIPLDFYIYQ 103

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRG----RRFQNAHETLIWASPSPKAKGYTFNYDALK 172
           +    +    + +V R         G    RRF   HET++W +     K Y+FN D ++
Sbjct: 104 IFMGNSKKYEHPLVLRNRIIWTFGHGLNSLRRFSGRHETILWFTKG---KEYSFNLDCIR 160

Query: 173 AANEDVQMRS---------------DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
                   R                     +        N   +  HP Q P A+  R++
Sbjct: 161 IPQRYPGKRYYKGKNKGKFSGNPLGKNPSDVWDIPNVKANHIEKTEHPCQFPIAIPQRLI 220

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            + T    I+ DPF GSGTSG  +    R FIG E++++Y DIA  RI   
Sbjct: 221 KALTPINGIVFDPFMGSGTSGVASILENRKFIGAEIQKEYFDIAKNRIQDA 271


>gi|255690810|ref|ZP_05414485.1| DNA (cytosine-5-)-methyltransferase [Bacteroides finegoldii DSM
           17565]
 gi|260623614|gb|EEX46485.1| DNA (cytosine-5-)-methyltransferase [Bacteroides finegoldii DSM
           17565]
          Length = 257

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 59/258 (22%), Positives = 87/258 (33%), Gaps = 37/258 (14%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           DKI   + +  +  +   SVD + AD PY +      +             WD     E 
Sbjct: 5   DKIYHMDCLKGMSLMADGSVDAVIADLPYGVLNRQNKHAK-----------WDNAIPLE- 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                       RR+ KP+  + + G    +F    ML   N W  N +  +        
Sbjct: 53  ------PLWEQYRRITKPDSPIILFG--QGLFSARLMLSQPNMWRYNLVWQKDRVTGHLN 104

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNY-----------------DALKAANEDVQMRSD 183
             R     HE ++             +Y                     A        SD
Sbjct: 105 ANRMPLRQHEDILVFYKKQPVYHPQMSYKPEKKNHPRGMFKRMTNRCYGAMKPTPSHISD 164

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           W  P          + G   HPTQKP AL   ++ + T  GD +LD   GSGT+   A +
Sbjct: 165 WKYPTSVIYMPKEFRTGMFYHPTQKPVALAEYLIRTYTNEGDTVLDNCIGSGTTAVAAIR 224

Query: 244 LRRSFIGIEMKQDYIDIA 261
             R +IG E++  Y +IA
Sbjct: 225 TGRHYIGFEIEPAYCEIA 242


>gi|238025810|ref|YP_002910041.1| hypothetical protein bglu_1g01350 [Burkholderia glumae BGR1]
 gi|237875004|gb|ACR27337.1| Hypothetical protein bglu_1g01350 [Burkholderia glumae BGR1]
          Length = 258

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 63/255 (24%), Positives = 101/255 (39%), Gaps = 34/255 (13%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQL------YRPDHSLVDAVTDS 71
           +++ + +++ +   LP  S+D++F DPPY    L L+ +       Y      VD     
Sbjct: 19  NQLHQVDALELARSLPDHSIDMVFTDPPYASGGLHLSAKTRSVQAKYIQSGIAVDYENFE 78

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
            D      A+  +  AWL  CRR +KP G L     +  +  +  ++Q          VW
Sbjct: 79  GDNM-DQRAWAFWCHAWLSECRRAMKPGGLLACFIDWRQLATLTDVVQAAGLIFRGIAVW 137

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
            K+      R   F    E L+WAS     +   +                   +P+   
Sbjct: 138 DKTPGRFRPRRGGFAQQAEFLVWASRGDMRQSEVYLPGVFSV-----------RLPLP-- 184

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
                     K H T+KP  L +R +V       ++ DPF GSGT    A+    S+IG 
Sbjct: 185 ----------KQHVTEKPLDL-AREVVRLVPADGVVFDPFAGSGTHLVAARDAGLSWIGA 233

Query: 252 EMKQDYIDIATKRIA 266
           E  + Y ++AT R+A
Sbjct: 234 ETNRRYHEVATARLA 248


>gi|119382877|ref|YP_913933.1| DNA methylase N-4/N-6 domain-containing protein [Paracoccus
           denitrificans PD1222]
 gi|119372644|gb|ABL68237.1| DNA methylase N-4/N-6 domain protein [Paracoccus denitrificans
           PD1222]
          Length = 225

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 57/250 (22%), Positives = 96/250 (38%), Gaps = 41/250 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           ++ +I  + +  ++     SVD I  DPPY               V    D   +  + +
Sbjct: 9   RNLVINADCVEAMQAFGTGSVDFILTDPPY---------------VTRFRDRQGRTVAND 53

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
               + R       RVLK  G       ++ +       +   F I+  +V+RK      
Sbjct: 54  DNARWLRPAFAQMHRVLKDGGFCVSFYGWNKVDLFVEAWKAAGFRIVGHLVFRKRYASS- 112

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
              R  +  HE     +                       +      P            
Sbjct: 113 --ARFLRYEHEQAYLLAKGDPELP-------------AQPVPDVLDFPYT---------- 147

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G +LHPTQKP A L R++ + T+PGD++LDPF GSG++ A A  L R ++G+E+   +  
Sbjct: 148 GNRLHPTQKPVAALRRLIGAFTQPGDLVLDPFSGSGSTLAAAHLLGRDWLGVELDVSHYQ 207

Query: 260 IATKRIASVQ 269
              +R+A++Q
Sbjct: 208 TIGRRMAALQ 217


>gi|325963996|ref|YP_004241902.1| DNA modification methylase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323470083|gb|ADX73768.1| DNA modification methylase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 290

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 62/269 (23%), Positives = 109/269 (40%), Gaps = 26/269 (9%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLN---------------GQLYRPDHSLVDA 67
           ++  ++   L  LP  +  LI+ DPP+N                   G          D 
Sbjct: 14  VVHADNADFLPSLPDGAFTLIYVDPPFNTGRTQTRQQTTMVVNADGTGDRVGFKGRSYDT 73

Query: 68  VTDSWDKFSS-FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFW 124
           +  +  ++   F  Y +F    L+   R+L  +GTL++   Y  +     ML  +     
Sbjct: 74  IKGALHRYDDAFSDYWSFLEPRLVEAWRLLADDGTLYLHLDYREVHYAKVMLDAIFGREC 133

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY------TFNYDALKAANEDV 178
            LN+I+W            R+   H+ ++    +P    +         Y A      + 
Sbjct: 134 FLNEIIWAYDYGA--RAKNRWPTKHDNILVYVKNPAKYHFDSAEVDREPYMAPGLVTPEK 191

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
           +        +   +        +  +PTQKPE L+ R++ +S++PGD  LD F GSGT G
Sbjct: 192 RELGKLPTDVWWHTIVSPTGKEKTGYPTQKPEGLVRRVVAASSRPGDWCLDFFAGSGTLG 251

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           AVA ++ R F+ ++  Q  ID+  KR+ +
Sbjct: 252 AVAARMDRKFVCVDQNQPAIDVMAKRLGA 280


>gi|220930207|ref|YP_002507116.1| DNA methylase N-4/N-6 domain protein [Clostridium cellulolyticum
           H10]
 gi|220000535|gb|ACL77136.1| DNA methylase N-4/N-6 domain protein [Clostridium cellulolyticum
           H10]
          Length = 413

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 105/265 (39%), Gaps = 41/265 (15%)

Query: 20  KDKIIKGNS-----ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           + +++ G+S       VL  +  K+ +L+  DPPYN+   G   +  +            
Sbjct: 166 QHRLVCGDSTKKDTFDVL--MDGKAANLVVTDPPYNVNYEGTAGKIKN-----------D 212

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
             + EA+  F  A        +  + +++V  +            +  F++    +W+K 
Sbjct: 213 NMANEAFYDFLLAAFQNTEEAMAKDASIYVFHADTEGLNFRRAFSDAGFYLSGTCIWKKQ 272

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           + +       +Q  HE +++         +  +                    I    + 
Sbjct: 273 SLV--LGRSPYQWQHEPVLFGWKKKGKHLWYSDRKQTT---------------IWEFEKP 315

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            +N D    HPT KP AL++  +++S+    I+LDPF GSG++    ++  R    IE+ 
Sbjct: 316 KKNSD----HPTMKPVALVAYPIMNSSLSNCIVLDPFGGSGSTLIACEQTDRICYTIELD 371

Query: 255 QDYIDIATKRIASVQPLGNIELTVL 279
           + Y D+  KR   ++ +GN +   L
Sbjct: 372 EKYCDVIVKRY--IEQVGNSDGVFL 394


>gi|290956711|ref|YP_003487893.1| DNA methylase [Streptomyces scabiei 87.22]
 gi|260646237|emb|CBG69332.1| putative DNA methylase [Streptomyces scabiei 87.22]
          Length = 251

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 61/255 (23%), Positives = 96/255 (37%), Gaps = 31/255 (12%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT---------DSWD 73
           + +G+++SVL  LP   VD +  DPPYN        R   S     T         D   
Sbjct: 5   LHQGDALSVLADLPDDCVDSVITDPPYNSGGRTAKERTTRSAKQKYTSADAQHTLPDFTG 64

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           +     +Y  +    +    R+ +  GT  +   +  +      +Q   +     + W K
Sbjct: 65  ENMDQRSYGFWLTQIMTEAHRLTRTGGTALLFTDWRQLPVTTDAIQAAGWLWRGVLAWHK 124

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
               P     RF    E ++WAS             A+  +   V +   +     SG++
Sbjct: 125 PQARPQ--KGRFTQNCEFIVWASKG-----------AIDGSRNPVYLPGMYSASQPSGAK 171

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           R         H TQKP  ++ R LV  +  G  +LD   GSG++G  A    R FIG+E 
Sbjct: 172 RQ--------HITQKPVEVM-RELVKISPEGGTVLDFCAGSGSTGVAALLEGRDFIGVEK 222

Query: 254 KQDYIDIATKRIASV 268
            + Y  IA  R+   
Sbjct: 223 TEHYASIAADRLTET 237


>gi|154504827|ref|ZP_02041565.1| hypothetical protein RUMGNA_02337 [Ruminococcus gnavus ATCC 29149]
 gi|153794710|gb|EDN77130.1| hypothetical protein RUMGNA_02337 [Ruminococcus gnavus ATCC 29149]
          Length = 418

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/281 (18%), Positives = 111/281 (39%), Gaps = 39/281 (13%)

Query: 20  KDKIIKGNSI--SVLEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K ++I G+SI     E+L      +L+  DPPYN+ +     +  +              
Sbjct: 165 KHRVICGDSILPETYERLMDGRKANLVLTDPPYNVNVEETAGKIKN-----------DNM 213

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E +  F  A  +   + ++ + +++V  +           ++  F++    +W+K+  
Sbjct: 214 PDEDFYKFLFAAFVNMEQSMEQDASIYVFHADTEGLNFRKAFKDAGFYLSGCCIWKKNAL 273

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +       +Q  HE  ++         +            D +  + W       S    
Sbjct: 274 V--LGRSPYQWQHEPCLFGWKKGGKHQWY----------SDRKQTTIWEYDRPKAS---- 317

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                K HPT KP AL++  + +S     I+LDPF GSG++    ++  R   GIE+ + 
Sbjct: 318 -----KDHPTMKPVALMAYPIQNSCMSNCIVLDPFLGSGSTLIACEQTHRICYGIELDEK 372

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERG 297
           ++D+   R   ++  G+     +   R + ++++  L + G
Sbjct: 373 FVDVIVNRY--IEQCGSDADVFVI--RDDMKISYQQLCKGG 409


>gi|39304|emb|CAA38200.1| unnamed protein product [Bacillus amyloliquefaciens]
          Length = 400

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 76/284 (26%), Positives = 120/284 (42%), Gaps = 39/284 (13%)

Query: 1   MSQKNSLAINENQNSIFEWKD-------KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
           +  KNS+ +NE  NSI E K        K+  G+ + + +++P ++VD IFADPP+NL  
Sbjct: 70  LENKNSVKLNE-FNSIQEIKPYFYTDLGKLYNGDCLELFKQVPDENVDTIFADPPFNLDK 128

Query: 54  NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
                  D +             SF  Y  +   W+  C RVLKP G+L++         
Sbjct: 129 EYDEGVTDKN-------------SFSGYLDWYYKWIDECIRVLKPGGSLFIYNIPKWNTY 175

Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
           +   L N      N I       +P     R   A+ +L++     K K +      L+ 
Sbjct: 176 LSEYL-NRKLNFRNWITVDMKFGLPIQ--NRLYPANYSLLYYVKGDKPKTFNVQRIPLQT 232

Query: 174 ANEDVQMRSDW-------------LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
                +   D+             L  + S    +R+   +     +    LL RI+  S
Sbjct: 233 CPHCGREIKDYGGYKNKMNPKGVTLSDVWSDIYPVRHSSSKNRKFNELSVKLLDRIITMS 292

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           T  GD++LDPF GSGT+ AV++ L R +IG E+     +I  +R
Sbjct: 293 TNEGDVVLDPFGGSGTTFAVSEMLGRKWIGFELGN--CEIIKER 334


>gi|158333607|ref|YP_001514779.1| DNA methylase [Acaryochloris marina MBIC11017]
 gi|158303848|gb|ABW25465.1| DNA methylase [Acaryochloris marina MBIC11017]
          Length = 289

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 76/300 (25%), Positives = 128/300 (42%), Gaps = 54/300 (18%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQ--LNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           I+G+ + +  KL   S++L+  DPPYNL    NG+ +                  S  AY
Sbjct: 18  IQGDCLDIAPKLLQGSINLLILDPPYNLNKVFNGRTFAKQ---------------SVAAY 62

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +        + +L+P+ ++++ G + +   I T+  + +F + N I W +        
Sbjct: 63  TEWLDYICSKLKPLLRPDASIYICGDWFSSASIFTVATS-HFQVRNRITWEREKGRGAHS 121

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALK-------AANEDVQMRSDWLIP------- 187
              ++NA E + + +    +  YTFN  A+K                 DW          
Sbjct: 122 N--WKNASEDIWFCT---NSNSYTFNSQAVKQRRRVLAPYRRPDGSPKDWSQTENGNFRD 176

Query: 188 ------ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                     S    +      HPTQK E L+++++++S+ PGD +LDPF GSGT+  VA
Sbjct: 177 TFASNLWTDISIPFWSMPENTDHPTQKSEKLVAKLILASSNPGDTVLDPFLGSGTTSVVA 236

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP 301
           KKL+R FIGIE+ ++Y  ++ +RI        I+                +  ER  I P
Sbjct: 237 KKLQRQFIGIEIDEEYCLLSERRIELADSNPAIQGFAQE-----------IFWERNTIIP 285


>gi|297583096|ref|YP_003698876.1| DNA methylase N-4/N-6 domain-containing protein [Bacillus
           selenitireducens MLS10]
 gi|297141553|gb|ADH98310.1| DNA methylase N-4/N-6 domain protein [Bacillus selenitireducens
           MLS10]
          Length = 409

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 58/266 (21%), Positives = 101/266 (37%), Gaps = 35/266 (13%)

Query: 20  KDKIIKGNSISV--LEKL-PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + K+I G+S      E L   +  +LI  D PYN+   G   +  +          D   
Sbjct: 165 RHKLICGDSTEAGTYETLMAGEKANLIVTDLPYNVDYEGSAGKIQN----------DNMG 214

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E Y    +A+       L+    ++V  +        T +++  F+I    +W K+ P
Sbjct: 215 DQEFYTFLLKAY-QNMFGHLEDGAGIYVFHADRETVNFRTAMKDAGFFIHQTCIWVKNAP 273

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           + N     +   HE +++         +  +       N D   +SD             
Sbjct: 274 VLNRCDYLYT--HEPILYGWKPTAGHKFYGDRKQRTVWNFDRPTKSD------------- 318

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                 LHPT KP AL +  + +S+    I+LDPF GSG++    ++  R    IE+   
Sbjct: 319 ------LHPTMKPVALCAYPIQNSSLSNCIVLDPFGGSGSTMMACEQTNRIARLIELDPK 372

Query: 257 YIDIATKRIASVQPLGNIELTVLTGK 282
           Y D+  KR    + + +    +  GK
Sbjct: 373 YADVIVKRYIDFKEITDDVTLIRGGK 398


>gi|317008913|gb|ADU79493.1| type II DNA modification [Helicobacter pylori India7]
          Length = 252

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 95/254 (37%), Gaps = 27/254 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G++ SVLE       DL    PPYNL +  Q                D F +++ Y 
Sbjct: 12  LYHGDA-SVLETFEKGFYDLCVTSPPYNLSIEYQGS--------------DDFRAYDDYL 56

Query: 83  AFTRAWLLACRRVLKPNGTLW--------VIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            + + WL  C    K    L           G       I  + +   +   N I+W +S
Sbjct: 57  NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADITIVAKECGWKYQNTIIWNES 116

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N         +  A       + +P      F  +  K   +   M  +  +   +G   
Sbjct: 117 NISRRTAWGSWLQASAP---YAIAPVELIVVFYKNEYKRKKQTSTMSKEEFLLYTNGLWN 173

Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
              +  ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E+
Sbjct: 174 FSGESKKRLKHPAPFPRELPRRCIQLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEI 233

Query: 254 KQDYIDIATKRIAS 267
           +++Y +++ KRI  
Sbjct: 234 EKEYCELSKKRILE 247


>gi|331088961|ref|ZP_08337868.1| DNA methylase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330406413|gb|EGG85926.1| DNA methylase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 277

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 56/266 (21%), Positives = 108/266 (40%), Gaps = 29/266 (10%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I   + + +L ++P   V LI  DPPY +       R  H+++   T           
Sbjct: 18  NQIYHTDCMELLAQIPDNYVSLILTDPPYGISYRNHFARQPHAVLTGDTGI--------D 69

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN--PMP 138
           Y+ F R       R+L+ N   +    +         L+   F + N ++  K     + 
Sbjct: 70  YERFAR----ESYRILRENSHAYFFTRFDCYPYHYDCLERAGFTVKNCLIVEKGTIGGIG 125

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYT----------FNYDALKAANEDVQMRSD--WLI 186
           +  G    NA E +I+     +   +T            Y A +  ++  + R +  W  
Sbjct: 126 DLTGSYANNA-EWIIFCQKGRRTFQHTTLLENRKKEGMQYHAGRERSKKYKTRFNACWFG 184

Query: 187 PICSGSER--LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
                +    +  K  +  HPT K    LS ++  S+  G+++ D F G+G++   A + 
Sbjct: 185 EEYPKATYNSVWQKQHQIYHPTIKNVECLSWLIQISSLQGELVFDGFMGTGSTALAAIQT 244

Query: 245 RRSFIGIEMKQDYIDIATKRIASVQP 270
           +R+++G E+ + Y +IA  RI  V+ 
Sbjct: 245 QRAYLGAEIDKAYFEIAQNRIKEVEK 270


>gi|218459652|ref|ZP_03499743.1| site-specific DNA-methyltransferase (adenine-specific) protein
           [Rhizobium etli Kim 5]
          Length = 101

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 57/100 (57%), Positives = 73/100 (73%)

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVG 335
           +TV+TGK+ E RVAFN+LVE GLI+PGQ+LT+A+   SA V ADGT+ SG E GSIHR+G
Sbjct: 1   MTVMTGKKAEVRVAFNVLVESGLIKPGQVLTDAKRRYSAIVRADGTVASGGEAGSIHRLG 60

Query: 336 AKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYNC 375
           AKV G + CNGW FW+FE    L  I+ LR ++R +L   
Sbjct: 61  AKVQGLDACNGWTFWHFEDGQSLRPIDDLRSVIRSDLAKV 100


>gi|308067601|ref|YP_003869206.1| hypothetical protein PPE_00818 [Paenibacillus polymyxa E681]
 gi|305856880|gb|ADM68668.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 421

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 92/251 (36%), Gaps = 32/251 (12%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K ++I G+S     +   +  K   LI  DPPYN+   G+         DA+    DK  
Sbjct: 165 KHRLICGDSTNQQDIATLMDGKKAQLIVTDPPYNVDYTGKT-------KDALKIENDKMD 217

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           + + YD F  A       V     +++V  +               F +    +W K   
Sbjct: 218 NNQFYD-FLLAAYTRMYEVADDGASIYVFHADSEGLNFRKSFIEAGFKLSQCCIWAKQAM 276

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +       +   HE +++         +  +         D   R+++            
Sbjct: 277 VMGHADYHW--MHEPVLYGWKPTGGHYWNSDRKQTTLWQFDRPFRNEY------------ 322

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                  HPT KP  L+S  + +S+K GDI+ DPF GSG++    ++  R     E+   
Sbjct: 323 -------HPTMKPIPLISYPIKNSSKLGDIVFDPFGGSGSTLIACEETDRLCYTSELDPK 375

Query: 257 YIDIATKRIAS 267
           Y+D+   R  S
Sbjct: 376 YVDVIVSRYIS 386


>gi|308273938|emb|CBX30538.1| hypothetical protein N47_K27780 [uncultured Desulfobacterium sp.]
          Length = 354

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 115/290 (39%), Gaps = 45/290 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            +   + ++  + +   S+ LIFADPPYN+                    WD F S + Y
Sbjct: 81  TLYNEDVVTFFKTIKTSSIQLIFADPPYNIHKA----------------EWDTFESQKEY 124

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMPN 139
             ++  W+   +RVL+PNG+L++ G    +  +     +L      L      K+N   +
Sbjct: 125 VDWSMEWIKEAQRVLEPNGSLYICGFSEILADLKWAASSLFKGCKWLVWFYRNKANLTSD 184

Query: 140 FRG---------------------RRFQNAHETLIWASPSPKAKGY-TFNYDALKAANED 177
           +                       R   NAH       P  K+  Y            + 
Sbjct: 185 WGRSHESLLHFRKSSKIIFNVDEVRVPYNAHTLKYPHHPQAKSSQYGNGKEYVWSPHPKG 244

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
            + +  + IP  + +   R K     HPTQKP  L+ + +++S+ P  +++DPF GSGT+
Sbjct: 245 AKPKDVFEIPTLTNNSWEREK-----HPTQKPIELVKKCVLASSNPDGLVVDPFGGSGTT 299

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
            AVA+   R ++G E   +Y +   +R+     +  I       +  E R
Sbjct: 300 YAVAEAFNRKWLGTETNIEYCNTIKRRLQDRTHIERIADNGEEAEVAERR 349


>gi|225621478|ref|YP_002722737.1| DNA methylase N-4/N-6 domain-containing protein [Brachyspira
           hyodysenteriae WA1]
 gi|225216299|gb|ACN85033.1| DNA methylase N-4/N-6 domain protein [Brachyspira hyodysenteriae
           WA1]
          Length = 324

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 77/285 (27%), Positives = 125/285 (43%), Gaps = 38/285 (13%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N N+    +  +K I GN+  VL+K+     DL+  DPPYN+  N   Y+          
Sbjct: 35  NINEYKKEDIINKTINGNTFDVLKKIEKNISDLMIVDPPYNISKNYHGYKF--------- 85

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
               K     +Y+ +T  W+ +   +LK   +++V   + +   IG +L+   F I N I
Sbjct: 86  ----KDIDNLSYEKYTHLWVESIIPILKKEASIYVCCDWKSSLVIGNVLEK-YFNIQNRI 140

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN------YDALKAANEDVQMRSD 183
            W++           ++N  E + +A+    +  YTFN         + A         D
Sbjct: 141 TWQREKGRG--AKNNWKNGMEDIWFAT---VSNKYTFNVDDVKIRRKVIAPYRIEGKPKD 195

Query: 184 W-------LIPICSGSER------LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
           W           C  +          +      HPTQKPE L+++++++S+   D I DP
Sbjct: 196 WTETEDGNFRDTCPSNFWDDISVPYWSMSENTAHPTQKPEKLIAKLILASSNANDFIFDP 255

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           F GSGT+  VAKKL R++ GIE  + Y   A KRI + +    I+
Sbjct: 256 FLGSGTTSVVAKKLGRNYSGIEQHKTYCAWAEKRIENAENNKEIQ 300


>gi|265525120|gb|ACY75917.1| cytosine methyltransferase [Prochlorococcus phage P-SSM2]
          Length = 327

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 68/317 (21%), Positives = 114/317 (35%), Gaps = 79/317 (24%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + +D I+ G+    L++   +   +    PPY      + Y  + S +        +  S
Sbjct: 5   QMRDTILFGDCRDTLKEF-DEKARMCVTSPPY---YGLRDYGGEESQIG-------QEQS 53

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLW-VIGSYHNIFR----------------------- 113
            E +           R VL  +GT W  +G  +  +R                       
Sbjct: 54  PEEFIDELVKVFREVRNVLTDDGTCWVNLGDSYYNYRKDGCIPKQTFAKNRQDLPETTPR 113

Query: 114 -------------------IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
                                  ++   + +  DI+W K NPMP     R   AHE +  
Sbjct: 114 RSNKLKGLKEKDLIGIPWMFAFAMRADGWHLRQDIIWHKPNPMPESVRDRCTKAHEYIFL 173

Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER-------------------- 194
            S     K Y ++ +A+K   +D   R        S ++                     
Sbjct: 174 FSKQ---KNYFYDNEAIKEDAKDWGTRDRSKGKYTSNNDYGQTPHSGLTKSYAKKNKRSV 230

Query: 195 --LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
             +  K  +  H    P  L+   +++ ++ GDI+LDPF GSGT+ AVAK L R +IG E
Sbjct: 231 WSVTKKPYKGAHFATYPPDLIEPCILAGSEKGDIVLDPFMGSGTTAAVAKSLGRDYIGCE 290

Query: 253 MKQDYIDIATKRIASVQ 269
           + +DY D+  KR+   +
Sbjct: 291 LHEDYGDLIRKRVGEYE 307


>gi|167619961|ref|ZP_02388592.1| site-specific DNA methyltransferase [Burkholderia thailandensis
           Bt4]
          Length = 280

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 62/261 (23%), Positives = 106/261 (40%), Gaps = 32/261 (12%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDAVT--- 69
           +    D++   +++++   LP  S+D++F DPPY    L  + +   P    +++ T   
Sbjct: 37  LSPLLDRLHATDALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSEKYINSDTKAA 96

Query: 70  --DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
             D         A+  +  AWL  CRR LKP G L     +  +  +  ++Q     +  
Sbjct: 97  YVDFESDNMDQRAWAFWCHAWLTECRRALKPGGLLVCFIDWRQLPTLTDVVQAAGLILRG 156

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
             VW K+      R   F    E ++W               A + A  D ++    + P
Sbjct: 157 VAVWDKTPGRTRPRRGGFAQQAEFVVW---------------ASRGAMRDCEVYLPGVFP 201

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                         K H T+KP   ++R +V     G ++ D F GSGT  A A++    
Sbjct: 202 --------CRLPLPKQHVTEKPLD-IAREVVRLVPAGGVVCDLFAGSGTFLAAAREAGLH 252

Query: 248 FIGIEMKQDYIDIATKRIASV 268
           +IG E    Y  IA +R+A++
Sbjct: 253 WIGCETNAAYHAIAAERLAAM 273


>gi|61805913|ref|YP_214273.1| DNA adenine methylase [Prochlorococcus phage P-SSM2]
 gi|61374422|gb|AAX44419.1| DNA adenine methylase [Prochlorococcus phage P-SSM2]
          Length = 322

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 68/315 (21%), Positives = 113/315 (35%), Gaps = 79/315 (25%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +D I+ G+    L++   +   +    PPY      + Y  + S +        +  S E
Sbjct: 2   RDTILFGDCRDTLKEF-DEKARMCVTSPPY---YGLRDYGGEESQIG-------QEQSPE 50

Query: 80  AYDAFTRAWLLACRRVLKPNGTLW-VIGSYHNIFR------------------------- 113
            +           R VL  +GT W  +G  +  +R                         
Sbjct: 51  EFIDELVKVFREVRNVLTDDGTCWVNLGDSYYNYRKDGCIPKQTFAKNRQDLPETTPRRS 110

Query: 114 -----------------IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
                                ++   + +  DI+W K NPMP     R   AHE +   S
Sbjct: 111 NKLKGLKEKDLIGIPWMFAFAMRADGWHLRQDIIWHKPNPMPESVRDRCTKAHEYIFLFS 170

Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER---------------------- 194
                K Y ++ +A+K   +D   R        S ++                       
Sbjct: 171 KQ---KNYFYDNEAIKEDAKDWGTRDRSKGKYTSNNDYGQTPHSGLTKSYAKKNKRSVWS 227

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           +  K  +  H    P  L+   +++ ++ GDI+LDPF GSGT+ AVAK L R +IG E+ 
Sbjct: 228 VTKKPYKGAHFATYPPDLIEPCILAGSEKGDIVLDPFMGSGTTAAVAKSLGRDYIGCELH 287

Query: 255 QDYIDIATKRIASVQ 269
           +DY D+  KR+   +
Sbjct: 288 EDYGDLIRKRVGEYE 302


>gi|296122352|ref|YP_003630130.1| DNA methylase N-4/N-6 domain protein [Planctomyces limnophilus DSM
           3776]
 gi|296014692|gb|ADG67931.1| DNA methylase N-4/N-6 domain protein [Planctomyces limnophilus DSM
           3776]
          Length = 269

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 67/273 (24%), Positives = 99/273 (36%), Gaps = 29/273 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE-- 79
            +  G+   VL KL    VD +  DPPY     G   + D  L            SF+  
Sbjct: 11  TLYHGDLFEVLPKLSGLVVDTLLTDPPYCSGAAGGGAKCDPRLKYCQNGQNCGRVSFDGD 70

Query: 80  -----AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
                +Y  ++  WL  CRR L+      V   +  +  I   +Q  +F     + W K 
Sbjct: 71  NKDSISYGWWSMLWLKLCRRSLRETSYAMVFTDWRQLPTITNAMQGADFIHRGTMAWDKG 130

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
                      ++  E + W +    A                             G  R
Sbjct: 131 LASRAPHKGYIRHQCEFIPWGTLGKCANRSDTGPFP--------------------GCLR 170

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            + +  +K H T KP ALL  ++      G ++LDPF GSGT+   A+   R  IGIE+ 
Sbjct: 171 HQVRQDDKHHMTGKPTALLLELVQI-CPAGGMVLDPFAGSGTTLVAAQASGRRAIGIELS 229

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
           + Y +IA KR+  +   G  E      KR   R
Sbjct: 230 EAYCEIAAKRLELLASKGP-ESIARPQKRIAKR 261


>gi|218960436|ref|YP_001740211.1| DNA modification methylase [Candidatus Cloacamonas acidaminovorans]
 gi|167729093|emb|CAO80004.1| DNA modification methylase [Candidatus Cloacamonas acidaminovorans]
          Length = 275

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 62/283 (21%), Positives = 113/283 (39%), Gaps = 49/283 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++  G+++ +L+ +  +S+DLI   PPY                D+ T+++      + Y
Sbjct: 7   ELYLGDALEILQTIEKESIDLIVTSPPY---------------ADSRTNTYGGIKP-DEY 50

Query: 82  DAFTRAWLLACRRVLKPNGTLW------VIGSYHNIFRIGTML--QNLNFWILNDIVWRK 133
           + +         R+LKP GT        V+    + + I  +L  +   +    + +W K
Sbjct: 51  NEWFLPITQELLRILKPTGTFILNIKEKVVNGERHTYVIELILNMRKQGWLWTEEFIWHK 110

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL---------------------- 171
            N  P     RF++A E L+  + +   K Y                             
Sbjct: 111 KNCYPGKWPNRFRDAWERLLQFNKNKFFKMYQEEVMIPIGDWAEKRLSNLSHTDKIRDTS 170

Query: 172 KAANEDVQMRSDWLIP---ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
           K  +   +  S+W+       +    L  + G K H    P AL    +   T+PGD++L
Sbjct: 171 KVGSGFGKNVSNWVGKDKVYPTNVLHLATECGNKNHSATFPYALPEWFIKLFTRPGDVVL 230

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           DPF GSGT+   A  + R  IGI++  +Y ++   +I + Q +
Sbjct: 231 DPFMGSGTAVFAALNMGRKAIGIDINPEYYNLVLGKIQNQQQV 273


>gi|194467616|ref|ZP_03073603.1| DNA methylase N-4/N-6 domain protein [Lactobacillus reuteri 100-23]
 gi|194454652|gb|EDX43549.1| DNA methylase N-4/N-6 domain protein [Lactobacillus reuteri 100-23]
          Length = 319

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 78/289 (26%), Positives = 126/289 (43%), Gaps = 43/289 (14%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
           I  + +++    +KII G+S  V+ +L    VDL   DPPYNL                 
Sbjct: 24  IIHSTDNLQTISNKIINGDSFKVMTQLAPYQVDLALIDPPYNLNKQY------------- 70

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
                K  S   Y  +T+ W+   + +LK N +++V   +     +  +L+  NF I N 
Sbjct: 71  DGLNFKKMSTSKYQTYTQKWIDLLKPLLKENASIYVFSDWATSMALAPILEK-NFTIQNR 129

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN--------------------- 167
           I W++     + +   ++N  E + + + +P    YTFN                     
Sbjct: 130 ITWQREKGRGSLKN--WKNGMEDIWFLTANPS--DYTFNVDQVKQRRQVVAPYRQDGVAK 185

Query: 168 -YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
            + A K  N    M S++   I   S    +      HPTQKPE LL++I+++S+ P D 
Sbjct: 186 DWQATKNGNFRDTMPSNFWDDI---SIPYWSMPENTGHPTQKPEKLLAKIILASSNPNDF 242

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           I DPF GSG+S   A KL R ++GIE    Y      R+  ++   +I+
Sbjct: 243 IFDPFAGSGSSLVTAAKLNRRYLGIEQSLLYCAWGQYRLNQIKDDPSIQ 291


>gi|254778966|ref|YP_003057071.1| Non-functional cytosine methyltransferase (N4 methylation of
           cytosyl residues) [Helicobacter pylori B38]
 gi|254000877|emb|CAX28813.1| Non-functional cytosine methyltransferase (N4 methylation of
           cytosyl residues) [Helicobacter pylori B38]
          Length = 252

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 95/254 (37%), Gaps = 27/254 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G++ SVLE       DL    PPYNL +  Q                D F +++ Y 
Sbjct: 12  LYHGDA-SVLETFEKGFYDLCITSPPYNLSIEYQGS--------------DDFRAYDDYL 56

Query: 83  AFTRAWLLACRRVLKPNGTLW--------VIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            + + WL  C    K    L           G       I  + +   +   N I+W +S
Sbjct: 57  NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADITIVAKECGWKYQNTIIWNES 116

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N         +  A       + +P      F  +  K   +   M  +  +   +G   
Sbjct: 117 NISRRTAWGSWLQASAP---YAIAPVELIVIFYKNEYKRKKQTSTMSKEEFLLYTNGLWS 173

Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
              +  ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E+
Sbjct: 174 FSGESKKRLKHPAPFPRELPRRCIQLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEI 233

Query: 254 KQDYIDIATKRIAS 267
           +++Y +++ KRI  
Sbjct: 234 EKEYCELSKKRILE 247


>gi|325983433|ref|YP_004295835.1| DNA methylase N-4/N-6 domain-containing protein [Nitrosomonas sp.
           AL212]
 gi|325532952|gb|ADZ27673.1| DNA methylase N-4/N-6 domain protein [Nitrosomonas sp. AL212]
          Length = 292

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 67/286 (23%), Positives = 105/286 (36%), Gaps = 49/286 (17%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            E    I  G+S   L+ LP  S+DLI   PPY  Q         H              
Sbjct: 1   MEITADIYHGDSAEQLKLLPNDSIDLIITSPPYADQRKNTYGGIHH-------------- 46

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLW------VIGSYHNIFRIGTMLQ--NLNFWILND 128
             + Y  +         RVLKP GT        V+    + + I  +L+     +    +
Sbjct: 47  --DKYVEWFLPISAQLLRVLKPTGTFVLNIKEKVVEGERSTYVIELVLEMRKQGWLWTEE 104

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK---------------- 172
            +W K N  P     RF++A E L+  + + K   Y                        
Sbjct: 105 FIWHKKNCYPGKWPNRFRDAWERLLQFNKNRKFNMYQEEVMVPMGDWANSRLKNLSETDK 164

Query: 173 ------AANEDVQMRSDWLI---PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKP 223
                   +   +  S+WL       S    L  +   K H    PE L    +   TK 
Sbjct: 165 FRDNSKVGSGFGKNISNWLYRKKAYPSNVLHLATECNNKNHSAAFPEELPEWFIKLFTKE 224

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            D +LDPF GSGT+  VA +++R+ +GI++  +Y ++  K++  V+
Sbjct: 225 NDRVLDPFMGSGTTLIVANRMKRNSVGIDIVPEYCEMVRKQLKPVE 270


>gi|297379485|gb|ADI34372.1| Modification methylase [Helicobacter pylori v225d]
          Length = 252

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 95/254 (37%), Gaps = 27/254 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+ +SVLE       DL    PPYNL +  Q                D F +++ Y 
Sbjct: 12  LYHGD-VSVLETFEKGFYDLCITSPPYNLSIEYQGS--------------DDFRAYDDYL 56

Query: 83  AFTRAWLLACRRVLKPNGTLW--------VIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            + + WL  C    K    L           G       I  + +   +   N I+W +S
Sbjct: 57  NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNES 116

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N         +  A       + +P      F  +  K   +   +  +  +   +G   
Sbjct: 117 NISRCTAWGSWLQASAP---YAIAPVELIVVFYKNEYKRQKQTSTISKEEFLLYTNGLWS 173

Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
              +  ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E+
Sbjct: 174 FSGESKKRLKHPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEI 233

Query: 254 KQDYIDIATKRIAS 267
           +++Y +++ KRI  
Sbjct: 234 EKEYCELSKKRILE 247


>gi|53722104|ref|YP_111089.1| site-specific DNA methyltransferase [Burkholderia pseudomallei
           K96243]
 gi|52212518|emb|CAH38544.1| putative site-specific DNA methyltransferase [Burkholderia
           pseudomallei K96243]
          Length = 291

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 60/259 (23%), Positives = 101/259 (38%), Gaps = 32/259 (12%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDA----- 67
           +    D++   +++++   LP  S+D++F DPPY    L  + +   P    +++     
Sbjct: 47  LSPLLDRLHAMDALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSEKYINSDTKTV 106

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
            TD         A+  +  AWL  CRR LKP G L     +  +  +  ++Q     +  
Sbjct: 107 YTDFESDNMDQRAWAFWCHAWLSECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILRG 166

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
             VW K+      R   F    E ++W               A + A  D ++    + P
Sbjct: 167 VAVWDKTPGRTRPRRGGFAQQAEFVVW---------------ASRGAMRDCEVYLPGVFP 211

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                         K H T+KP   ++R +V     G ++ D F GSGT    A++    
Sbjct: 212 --------CRLPLPKQHVTEKPLD-IAREVVRLVPAGGVVCDLFAGSGTFLVAAREAGLH 262

Query: 248 FIGIEMKQDYIDIATKRIA 266
           +IG E    Y  IA  R+ 
Sbjct: 263 WIGCETNAAYHAIALHRLG 281


>gi|28211560|ref|NP_782504.1| chromosome partitioning parB family protein [Clostridium tetani
           E88]
 gi|28204001|gb|AAO36441.1| chromosome partitioning parB family protein [Clostridium tetani
           E88]
          Length = 357

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 56/267 (20%), Positives = 100/267 (37%), Gaps = 35/267 (13%)

Query: 20  KDKIIKGNSISVL---EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + ++I G+S       + +  K  +L+  DPPYN+   G   +  +          D   
Sbjct: 113 RHRLICGDSTKFETYEKLMEGKKANLVVTDPPYNVSYEGTAGKIQN----------DNMG 162

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             + Y  F           L   G+++V  +           ++  F+     +W K++P
Sbjct: 163 DKKFY-EFLLNSYKGMYESLADGGSIYVFHADKETVNFRVAFKDAGFFCHQTCIWIKNSP 221

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +   R     N    L+   P+   K Y            D + R+ W     + S    
Sbjct: 222 V-LGRCDYQYNHEPILVGWKPTAGHKFY-----------GDRKQRTTWNFDRPTKS---- 265

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                K HPT KP AL++  + +S+    I+LDPF GSG++    ++  R    IE+ + 
Sbjct: 266 -----KYHPTMKPIALVAYPITNSSLTNSIVLDPFGGSGSTLIACEQTDRICYTIELDEK 320

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKR 283
           Y D+  KR             +  G++
Sbjct: 321 YADVIVKRYIGQVDSDEAVFLIRNGEK 347


>gi|1171042|sp|P23941|MTB1_BACAM RecName: Full=Modification methylase BamHI; Short=M.BamHI; AltName:
           Full=N(4)- cytosine-specific methyltransferase BamHI
          Length = 423

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 77/284 (27%), Positives = 120/284 (42%), Gaps = 39/284 (13%)

Query: 1   MSQKNSLAINENQNSIFEWKD-------KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
           +  KNS+ +NE  NSI E K        K+  G+ + + +++P ++VD IFADPP+NL  
Sbjct: 93  LENKNSVKLNE-FNSIQEIKPYFYTDLGKLYNGDCLELFKQVPDENVDTIFADPPFNLDK 151

Query: 54  NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
                  D +             SF  Y  +   W+  C RVLKP G+L++         
Sbjct: 152 EYDEGVTDKN-------------SFSGYMDWYYKWIDECIRVLKPGGSLFIYNIPKWNTY 198

Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
           +   L N      N I       +P     R   A+ +L++     K K +      L+ 
Sbjct: 199 LSEYL-NRKMNFRNWITVDMKFGLPIQ--NRLYPANYSLLYYVKGDKPKTFNVQRIPLQT 255

Query: 174 ANEDVQMRSDW-------------LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
                +   D+             L  + S    +R+   +     +    LL RI+  S
Sbjct: 256 CPHCGREIKDYGGYKNKMNPKGVTLSDVWSDIYPVRHSSSKNRKFNELSVKLLDRIITMS 315

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           T  GD++LDPF GSGT+ AV++ L R +IG EM     +I  +R
Sbjct: 316 TNEGDVVLDPFGGSGTTFAVSEMLGRKWIGFEMGN--CEIIKER 357


>gi|189347088|ref|YP_001943617.1| DNA methylase N-4/N-6 domain protein [Chlorobium limicola DSM 245]
 gi|189341235|gb|ACD90638.1| DNA methylase N-4/N-6 domain protein [Chlorobium limicola DSM 245]
          Length = 308

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 114/294 (38%), Gaps = 64/294 (21%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +   +S+  + +LP  SVDL+   PPY L    +                   +S + Y 
Sbjct: 16  LYCADSLEFMRQLPDDSVDLVVTSPPYALHFKKEYGN----------------ASQQEYI 59

Query: 83  AFTRAWLLACRRVLKPNGTLWVI--GSYH--------NIFRIGTML-QNLNFWILNDIVW 131
           A+   +    +R++KP+G+  +   GS+           +R+   L     + +  +  W
Sbjct: 60  AWFLPFAREIKRIIKPSGSFVLNIGGSWQPGVPVRSLYHYRVLLALVDETGYDLAQEFFW 119

Query: 132 RKSNPMPNF------RGRRFQNAHETLIWASPSPKAK--------GYTFNYDALKAANED 177
                MP        R  R +++ E + W    P A          Y+ +   L      
Sbjct: 120 FNPAKMPAPAEWVNVRRIRVKDSVEYIFWFVKDPMAHADNRKVLQPYSDDMKRLIKRGVK 179

Query: 178 VQMRS-----------DWLIPICSGSERLRNKD------------GEKLHPTQKPEALLS 214
             +R            D    I S   +  N +            G K+HP + P  L  
Sbjct: 180 QTIRPSGHVITGTFASDRGGSIPSNLIQCGNNESNSAYVKNSRIAGNKIHPARFPAELPR 239

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
             +   T PGD++LDPF GS T+G VA++L+R ++G+E+++DY   +  R   +
Sbjct: 240 FFMEFLTNPGDLVLDPFAGSNTTGHVAERLKRRWLGVELREDYAQESRLRFEGL 293


>gi|94992621|ref|YP_600720.1| adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS2096]
 gi|94546129|gb|ABF36176.1| Adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS2096]
          Length = 283

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 56/266 (21%), Positives = 108/266 (40%), Gaps = 29/266 (10%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I   + + +L ++P   V LI  DPPY +       R  H+++   T           
Sbjct: 24  NQIYHTDCMELLAQIPDNYVSLILTDPPYGISYRNHFARQPHAVLTGDTGI--------D 75

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN--PMP 138
           Y+ F R       R+L+ N   +    +         L+   F + N ++  K     + 
Sbjct: 76  YERFAR----ESYRILRENSHAYFFTRFDCYPYHYDCLERAGFTVKNCLIVEKGTIGGIG 131

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYT----------FNYDALKAANEDVQMRSD--WLI 186
           +  G    NA E +I+     +   +T            Y A +  ++  + R +  W  
Sbjct: 132 DLTGSYANNA-EWIIFCQKGRRTFQHTTLLENRKKEGMQYHAGRERSKKYKTRFNACWFG 190

Query: 187 PICSGSER--LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
                +    +  K  +  HPT K    LS ++  S+  G+++ D F G+G++   A + 
Sbjct: 191 EEYPKATYNSVWQKQHQIYHPTIKNVECLSWLIQISSLQGELVFDGFMGTGSTALAAIQT 250

Query: 245 RRSFIGIEMKQDYIDIATKRIASVQP 270
           +R+++G E+ + Y +IA  RI  V+ 
Sbjct: 251 QRAYLGAEIDKAYFEIAQNRIKEVEK 276


>gi|119357320|ref|YP_911964.1| DNA methylase N-4/N-6 domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354669|gb|ABL65540.1| DNA methylase N-4/N-6 domain protein [Chlorobium phaeobacteroides
           DSM 266]
          Length = 284

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 73/287 (25%), Positives = 111/287 (38%), Gaps = 56/287 (19%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            E +  +  G+   +LE LP +SVDLIF  PPY                D    ++  F 
Sbjct: 1   MEIRTDLYLGDCREILENLPDESVDLIFTSPPY---------------ADQRKQTYGGF- 44

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIG---------SYHNIFRIGTMLQNLNFWILN 127
             + Y A+         RVLKP GT  +           S + +  I  M +   +    
Sbjct: 45  HPDDYVAWFLPISFQLMRVLKPTGTFVLNIKEKVLNGERSTYVMELILEMRKQQGWLWTE 104

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS----- 182
           + +W K N  P     RF+++ E LI  +     K +  N DA+     D          
Sbjct: 105 EFIWHKKNCYPGKWPNRFRDSWERLIQFNKR---KQFYMNQDAVMVPMGDWSRTRLKNLS 161

Query: 183 --------------------DWL---IPICSGSERLRNKDGEKLHPTQKPEALLSRILVS 219
                               +WL   +   +    L  +   K H    PE L    +  
Sbjct: 162 ETDKMRDESKVGSGFGKNISNWLQRDMAYPTNVLHLATECNNKNHSAAFPEGLPEWFIKL 221

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
            TK GD +LDPF GSGT+ AVAK+++R+ IGIE+  +Y ++    + 
Sbjct: 222 FTKEGDTVLDPFMGSGTTNAVAKRMKRNSIGIEIMTEYYEMVKNELK 268


>gi|163846816|ref|YP_001634860.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222524637|ref|YP_002569108.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus sp.
           Y-400-fl]
 gi|163668105|gb|ABY34471.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222448516|gb|ACM52782.1| DNA methylase N-4/N-6 domain protein [Chloroflexus sp. Y-400-fl]
          Length = 329

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 63/303 (20%), Positives = 120/303 (39%), Gaps = 64/303 (21%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I+ G+    + ++P +S+ LI   PPYNL                   +++   S EAY 
Sbjct: 25  IMSGDVSECIAQIPDRSIALIVTSPPYNLGK-----------------AYEDRVSIEAYL 67

Query: 83  AFTRAWLLACRRVLKPNGTL-WVIGSYHNIFRIGT-------MLQNLNFWILNDIVWRKS 134
                 +    RVL+ +G++ W +G++     +         + + L   + N IVW+  
Sbjct: 68  QTQAELIAQLCRVLRDDGSICWQVGNFVEHGEVYPLDILYYPIFKRLGLRLRNRIVWKFG 127

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS------------ 182
           + +     +RF   +ET++W +    +  Y FN DA++   +    R             
Sbjct: 128 HGL--HASKRFSGRYETILWFTK---SDHYIFNLDAVRVPAKYPGKRHFKGPNKGRPSGN 182

Query: 183 ---------------DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
                          DW   +        N   + +HP Q P  L+ R +++ T  GD++
Sbjct: 183 PLGKNPSDVWEILERDWEELVWDIPNVKSNHPEKTIHPCQFPIELVERCVLALTNEGDMV 242

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS-------VQPLGNIELTVLT 280
            DP+ G G++   A   +R  +G + +  Y++IA +R+          +PLG        
Sbjct: 243 FDPYMGVGSTLIAALMHQRRAVGCDKEATYVEIARQRVVDYFNGTLRYRPLGKPVYQPTG 302

Query: 281 GKR 283
            ++
Sbjct: 303 REK 305


>gi|257076824|ref|ZP_05571185.1| hypothetical protein Faci_07171 [Ferroplasma acidarmanus fer1]
          Length = 619

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 67/303 (22%), Positives = 127/303 (41%), Gaps = 35/303 (11%)

Query: 18  EWKDKIIKGNSISVLEKLP----AKSVDLIFADPPY--NLQLNGQLYRPDHSLVD----- 66
           +WK+K+I G++  V+  L     A  ++LI+ DPP+      +      D + V+     
Sbjct: 66  DWKNKLIWGDNKLVMSSLLKQGWAGKINLIYIDPPFYTGADFSYTTQVNDDTEVEKEPSV 125

Query: 67  ----AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL- 121
               A  D+W    S  +Y  +    L   R +L  NG++++   +     +  +   + 
Sbjct: 126 IEQRAYRDTWSGGIS--SYLKYMYERLSIMRDLLADNGSIYIHLDWRVSHYVKIICDEIF 183

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
               + DIVW       +     +   H+T+++   +  +          +   +     
Sbjct: 184 GINFMADIVWHYHTGGVSKLN--WGRKHDTILFYVKNKDSDFTFNLIKEKRYYEKPFFNS 241

Query: 182 SDWLIPICSGSERLRNKDGEKL--------------HPTQKPEALLSRILVSSTKPGDII 227
           ++      +G   +     +                +PTQKPEALL R++ +S+  GDI+
Sbjct: 242 TEGYQTDENGKIYVMAHPDDVWDIPAVLNVSSQFIGYPTQKPEALLERVIKASSNKGDIV 301

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
            D F GSGT+ AVA+KL R +IG ++ +  I ++ KR+  +    N+    +  K  +P 
Sbjct: 302 ADFFCGSGTTLAVAEKLGRRWIGSDLSKYAIQVSRKRLLDIHNSKNLTNEEV-NKYGKPA 360

Query: 288 VAF 290
             F
Sbjct: 361 RPF 363


>gi|7960015|gb|AAF71177.1|AF158026_3 EcoVIII methyltransferase [Escherichia coli]
 gi|1213327|gb|AAA91204.1| EcoVIII modification methylase [Escherichia coli]
          Length = 304

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 121/296 (40%), Gaps = 52/296 (17%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN-----------------------GQ 56
           K+ +  GNSIS+++KLP++   LI +D PY +                          G 
Sbjct: 13  KNTVTNGNSISLIKKLPSQYAHLILSDIPYGIGAEDWDVLHNNSNNAYLGSSPAQKNAGA 72

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
           +++     ++  +++ DK    E Y  +   W     RVLKP  +  +        R   
Sbjct: 73  IFKKRGKPINGWSEA-DKKIPLE-YQQWCEEWATEWFRVLKPGASAIIFAGRRFSHRCIC 130

Query: 117 MLQNLNFWILNDIVWRKSNP-------------------MPNFRGRRFQN---AHETLIW 154
            +++  F + + I W +                         + G R  N     E ++W
Sbjct: 131 AMEDAGFNLRDIIAWMRVKAPHRAQRLSCVYERRGDTLNAEKWNGWRVGNLQPTFEPILW 190

Query: 155 ASPSPKAKGYTFNY---DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
            S   K  G   +      + A N+D  +  +        +    N+ G  LHPTQKP A
Sbjct: 191 FSKPYKIGGTIADNAIIHGVGAYNQDAFVARNGKPENVITAGFSSNESG--LHPTQKPVA 248

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           L+  ++  +T+ G +++DPF GSG++   AK L R +IG E+   Y++ + KR+  
Sbjct: 249 LMKTLIELTTQKGQLVIDPFSGSGSTLVAAKDLGRDYIGFEINPTYVETSIKRLNK 304


>gi|323484105|ref|ZP_08089475.1| hypothetical protein HMPREF9474_01226 [Clostridium symbiosum
           WAL-14163]
 gi|323402547|gb|EGA94875.1| hypothetical protein HMPREF9474_01226 [Clostridium symbiosum
           WAL-14163]
          Length = 418

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 101/270 (37%), Gaps = 39/270 (14%)

Query: 20  KDKIIKGNSI-----SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           + ++I G+S       +L  +  +  +L+  DPPYN+   G      +  ++        
Sbjct: 165 RHRVICGDSTLPETYELL--MDGQKANLVVTDPPYNVNYEGTAGNIQNDHMEDGK----- 217

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
                 +  F  A  +   + ++P+ +++V  +            +  F++    +W+K 
Sbjct: 218 ------FYQFLFAAFVNMEQSMEPDASIYVFHADTEGLNFRKAFHDAGFYLSGCCIWKKQ 271

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           + +       +Q  HE +++         +  N           +  + W       S  
Sbjct: 272 SLV--LGRSPYQWQHEPVLFGWKKGGKHNWYSN----------RKQTTIWEFDRPKQS-- 317

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                  K HPT KP  L++  + +S     I+LDPF GSG++    ++  R     E+ 
Sbjct: 318 -------KDHPTMKPVGLVAYPIQNSCMSNCIVLDPFGGSGSTLIACEQTSRICYMAELD 370

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRT 284
           + ++D+  +R    +        +  G++ 
Sbjct: 371 EKFVDVIVQRYIEQKGSAEDVFVIRGGEKR 400


>gi|163816177|ref|ZP_02207545.1| hypothetical protein COPEUT_02361 [Coprococcus eutactus ATCC 27759]
 gi|158448597|gb|EDP25592.1| hypothetical protein COPEUT_02361 [Coprococcus eutactus ATCC 27759]
          Length = 237

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 68/247 (27%), Positives = 115/247 (46%), Gaps = 23/247 (9%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL--NGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K+   N++  +++LP  S+DLI  DPPYNL     G ++  +   ++     WD      
Sbjct: 10  KLFNENNLDFMKRLPDSSIDLILTDPPYNLSQFSRGNIHLNNGKTINNKIAEWDSIPLNP 69

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                   ++    R++KP G +++  SY  + +       L        VW K+ P  +
Sbjct: 70  ------NDYIEPFTRIIKPTGNIFIFTSYSLLGKWYDAFNPLFSTF-QIFVWHKTTPTQS 122

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
                F N+ E ++        KG+T+N+ +    +   +       P C   E++ +  
Sbjct: 123 VYHNSFLNSCELVV----CLWNKGHTWNFSSQDQMHNFFEC------PSCMFPEKIISPK 172

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
               HPTQKP  L+  +L+ S+ P DII DPF G GT+G  A K  R FIGI++ + Y+ 
Sbjct: 173 ----HPTQKPLELIEHLLLISSNPNDIIFDPFMGVGTTGEAALKNNRRFIGIDIDEKYVK 228

Query: 260 IATKRIA 266
            + KR++
Sbjct: 229 ASLKRLS 235


>gi|57233564|ref|YP_180818.1| DNA methylase [Dehalococcoides ethenogenes 195]
 gi|57224012|gb|AAW39069.1| DNA methylase [Dehalococcoides ethenogenes 195]
          Length = 411

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 105/266 (39%), Gaps = 41/266 (15%)

Query: 20  KDKIIKGNS-----ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           + +++ G+S      +VL  L  +  +L+  DPPYN+   G   +  +            
Sbjct: 166 RHRLVCGDSTKAETFAVL--LDDRKANLVITDPPYNVNYEGSAGKIKN-----------D 212

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
             + +A+  F  A       V+  + +++V  S            +  F++    +W+K 
Sbjct: 213 NMANDAFYNFLLAAFQNTEAVMADDASIYVFHSDTEGLNFRRAFSDAGFYLSGCCIWKKQ 272

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           + +       +Q  HE +++         +         +        ++  P  +G   
Sbjct: 273 SLV--LGRSPYQWQHEPVLYGWKKSGKHQWY--------SGRKETTIWEFDKPKKNGD-- 320

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                    HPT KP  LL+  +++S+    ++LDPF GSG++    ++  RS   IE+ 
Sbjct: 321 ---------HPTMKPIPLLAYPIMNSSMTNTLVLDPFGGSGSTLMACEQADRSCATIELD 371

Query: 255 QDYIDIATKRIASVQPLGNIELTVLT 280
           + + D+  KR   ++ +G  E   + 
Sbjct: 372 EKFCDVIVKRY--IEQVGAAEKVFVQ 395


>gi|331085743|ref|ZP_08334826.1| hypothetical protein HMPREF0987_01129 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406666|gb|EGG86171.1| hypothetical protein HMPREF0987_01129 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 418

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 47/299 (15%), Positives = 113/299 (37%), Gaps = 39/299 (13%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
           ++    A+ +  +       +++ G+S    +  + +  K  +L+  DPPYN+   G   
Sbjct: 147 AELKKPAMTKQGDVWMLGMHRLVCGDSTLPETYEKLMEGKKANLVVTDPPYNVNYEGSAG 206

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
           +  +  ++            + +  F  A  +   + ++ + +++V  +           
Sbjct: 207 KIQNDNLED-----------DKFYNFLFAAFVNMEQNMERDASIYVFHADTEGLNFRRAF 255

Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
           +   F++    +W+K + +       +Q  HE +++         +  +         D 
Sbjct: 256 KAAGFYLSGTCIWKKQSLV--LGRSPYQWQHEPILFGWKLGGKHMWYSDRKQSTIWEYDR 313

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
             ++D                   +HPT KP  L++  + +S+    I+LDPF GSG++ 
Sbjct: 314 PKKND-------------------MHPTMKPVELVAYPIRNSSMSNCIVLDPFGGSGSTM 354

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERG 297
              ++  R    IE+ + Y D+   R             +  GK+    + ++ L++ G
Sbjct: 355 IACEQTGRICRTIELDEKYADVIVHRYMEFVGSAEDVYVIRDGKK----IKYSELMKEG 409


>gi|321156960|emb|CBW38949.1| Cytosine specific DNA methyltransferase [Streptococcus phage V22]
 gi|321157075|emb|CBW39062.1| Cytosine specific DNA methyltransferase [Streptococcus phage 34117]
 gi|321157225|emb|CBW39209.1| Cytosine specific DNA methyltransferase [Streptococcus phage 8140]
          Length = 231

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 104/247 (42%), Gaps = 30/247 (12%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           DKIIK + +  +E +P   +DLI  DPPY +       +  H   + + +  +       
Sbjct: 4   DKIIKKDVLEFMETIPDNKIDLIVTDPPYLINYKTNWRKEKHKFSNVIKNDNN------- 56

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                + ++  C R+LK +  +++  S+  +      ++   F + N I+WRK+N     
Sbjct: 57  -PELIKEYIKECYRILKDDTAIYIFCSFDKVDFFKKEIEK-YFSVKNIIIWRKNNHTAGD 114

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
              +F   +E +I A+   K                  ++   W     S  E       
Sbjct: 115 LEAQFGKQYEMIILANKGRKKF-------------NGERLTDVWDFKRVSSDE------- 154

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
             LH  QKP  L+ R +V  +  GD + D F GSGT+   A +  R FIG E+ + Y  I
Sbjct: 155 -LLHQNQKPIELIKRCIVKHSDVGDTVFDGFMGSGTTALAALETDRHFIGTEIDEYYFGI 213

Query: 261 ATKRIAS 267
           A +RI +
Sbjct: 214 AEERIKN 220


>gi|254885078|ref|ZP_05257788.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides sp.
           4_3_47FAA]
 gi|254837871|gb|EET18180.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides sp.
           4_3_47FAA]
          Length = 267

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 62/265 (23%), Positives = 94/265 (35%), Gaps = 38/265 (14%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I   + I  ++ +   SV+ + AD PY +     L R + +        WD+    EA
Sbjct: 5   DNIYNMDCIEGMKLMADGSVNAVIADLPYGV-----LNRSNKAA------HWDRQIPLEA 53

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                       RR+ KP   + +      IF    ML     W  N +  +        
Sbjct: 54  LWE-------QYRRITKPGSPVILFA--QGIFSARLMLSQPRMWRYNLVWQKDRVTGHLN 104

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS------------------ 182
             R     HE +I                  +  N   +                     
Sbjct: 105 ANRMPLRQHEDIIVFYDRQPVYHPQMTPCPPEQRNHRRRKMDGFTNRCYGEMKLAPVRVA 164

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           D   P    S    +K G   HPTQKP AL+  ++ + T  GD++LD   GSGT+   A 
Sbjct: 165 DDKYPTSVISIPKEHKTGAFYHPTQKPVALIEYLIRTYTNEGDVVLDNCIGSGTTAIAAI 224

Query: 243 KLRRSFIGIEMKQDYIDIATKRIAS 267
           +  R +IG E++  Y +IA +RI  
Sbjct: 225 RTGRHYIGFEIEPAYCEIAGRRIRE 249


>gi|154497807|ref|ZP_02036185.1| hypothetical protein BACCAP_01785 [Bacteroides capillosus ATCC
           29799]
 gi|150273305|gb|EDN00450.1| hypothetical protein BACCAP_01785 [Bacteroides capillosus ATCC
           29799]
          Length = 242

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 101/252 (40%), Gaps = 31/252 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ------LNGQLYRPDHSLVDAVTDSWD-K 74
           +I+ G+++ +L +    + D +  DPPY          N    +   S+ D     +D  
Sbjct: 8   EILCGDALKLLREFSPGTFDAVITDPPYASGGRTQAEKNKSTAKKYSSMGDHAPPPFDGD 67

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
                ++  +   WL   R++ KP   + +   +  +      LQ   +      VW K 
Sbjct: 68  AKDQRSWTRWAAEWLSDARKLCKPGAPVCMFIDWRQLPAATDALQWAGWIWRGTAVWDKG 127

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N  P     RF+   E ++W S                    +  M     +P   G  +
Sbjct: 128 NSRPQ--KGRFRQQAEYIVWGS--------------------NGDMPISRPVPCLPGVFK 165

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
             N    ++H T+KP  L+  ++   T+PG  ILDPF GSGT+   A     S  GIE+ 
Sbjct: 166 YGNPQ-NRIHLTEKPLQLMRDVVKI-TEPGGHILDPFAGSGTTVLAAVLEGYSATGIEVT 223

Query: 255 QDYIDIATKRIA 266
           ++Y  +A +RI+
Sbjct: 224 EEYAKLARERIS 235


>gi|88604170|ref|YP_504348.1| DNA methylase N-4/N-6 [Methanospirillum hungatei JF-1]
 gi|88189632|gb|ABD42629.1| DNA methylase N-4/N-6 [Methanospirillum hungatei JF-1]
          Length = 329

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 60/264 (22%), Positives = 120/264 (45%), Gaps = 4/264 (1%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
             G+ I     +P  +VDLI  DPPY ++ + +L+R  +     VTD + +  + E Y++
Sbjct: 12  YNGDCIKGAALIPDNTVDLIITDPPYGIEGD-KLHRHYNRDESFVTDGYVEIPA-EEYES 69

Query: 84  FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
           FTR W+L   R+L+P G+L+++  Y ++  I   L   +   +N I+WR +  +  F   
Sbjct: 70  FTRDWILQAERILRPGGSLYIVSGYTHLRHILNALYETSLEEVNHIIWRYNFGV--FTSL 127

Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
           ++ ++H  +++ +     + +        +  ++     ++             K G+  
Sbjct: 128 KYVSSHYHILFYAKPGGKRTFNTECRFSLSEKDENGGSLNYQDREDVWIINREYKPGKVK 187

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +  + P ALLS+I+  S+  GD++ D F G  ++   A  L R   G E+     D    
Sbjct: 188 NKNELPTALLSKIIQYSSNEGDLVCDLFLGGFSTAKTAIGLLRRATGFEISPVMYDAKID 247

Query: 264 RIASVQPLGNIELTVLTGKRTEPR 287
            + +V P   ++      + +  R
Sbjct: 248 EMMAVVPGFLLDTAQTPKEPSRKR 271


>gi|148556255|ref|YP_001263837.1| DNA methylase N-4/N-6 domain-containing protein [Sphingomonas
           wittichii RW1]
 gi|148501445|gb|ABQ69699.1| DNA methylase N-4/N-6 domain protein [Sphingomonas wittichii RW1]
          Length = 314

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 72/288 (25%), Positives = 110/288 (38%), Gaps = 52/288 (18%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I+ G++ + L+ +PA S  +    PPY  Q +             V          +A
Sbjct: 32  DLIVHGSARAALDAMPAGSAHVAVTSPPYFGQRDY-----------GVAGQIGIEPDPDA 80

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHN--------IFRIGTMLQNLNFWILNDIVWR 132
           Y A   A   A RRVL+ +GTLW+               +R+   L    + + +DIVW 
Sbjct: 81  YVAALVAVFRALRRVLRDDGTLWLNLGDKYAGGALLGMPWRVALALVADGWRLRSDIVWH 140

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAK---------GYTFNYDALKAANED------ 177
           K N MP+   RR  + HE +   S +   +           TF  D+             
Sbjct: 141 KPNAMPHSNKRRPTHDHEYVFLLSKTDDYRYDADAIREPHRTFGPDSRMRGGRGHFGRRG 200

Query: 178 --------------VQMRSDWLIPICSGSERLRNK----DGEKLHPTQKPEALLSRILVS 219
                            R D        + R             H    P AL++  + +
Sbjct: 201 GTPEQGKNRGDANLHDGRWDQAFHPLGRNRRTVWSVPLGKYRDAHFAVFPPALITPCIRA 260

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            +  G ++LDPFFG+GT+G VA+   R F+GIE+  DY  +A  RI +
Sbjct: 261 GSPEGGVVLDPFFGAGTTGLVARAEGRRFVGIELNPDYCAMARDRILA 308


>gi|218133429|ref|ZP_03462233.1| hypothetical protein BACPEC_01294 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990804|gb|EEC56810.1| hypothetical protein BACPEC_01294 [Bacteroides pectinophilus ATCC
           43243]
          Length = 418

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 98/251 (39%), Gaps = 35/251 (13%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K ++I G+SI   +  + +  +  +L+  DPPYN+ +     +  +              
Sbjct: 165 KHRVICGDSILPETYDKLMDGQKANLVLTDPPYNVNVEETAGKIKN-----------DNM 213

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E +  F  A  +   + ++ + +++V  +           ++  F++    +W+K+  
Sbjct: 214 PDEDFYKFLFAAFVNMEQSMEQDASIYVFHADTEGLNFRKAFKDAGFYLSGCCIWKKNAL 273

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +       +Q  HE  ++         +            D +  + W       S    
Sbjct: 274 V--LGRSPYQWQHEPCLFGWKKGGKHQWY----------SDRKQTTIWEYDRPKAS---- 317

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                K HPT KP AL++  + +S     I+LDPF GSG++    ++  R   GIE+ + 
Sbjct: 318 -----KDHPTMKPVALMAYPIQNSCMSNCIVLDPFLGSGSTLIACEQTHRICYGIELDEK 372

Query: 257 YIDIATKRIAS 267
           ++D+   R   
Sbjct: 373 FVDVIVNRYIE 383


>gi|299142745|ref|ZP_07035874.1| DNA (cytosine-5-)-methyltransferase [Prevotella oris C735]
 gi|298575774|gb|EFI47651.1| DNA (cytosine-5-)-methyltransferase [Prevotella oris C735]
          Length = 399

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 100/257 (38%), Gaps = 32/257 (12%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           ++++ G+      ++  +  +  D+I  DPPYN+   G          D++ +       
Sbjct: 150 NRLMCGDCRSKKDIVTLMNGRVADMILTDPPYNVNYEGGGDSKLTIQNDSMEN------- 202

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            + +  F ++       ++K  G+ +V  +          ++   F I    +W K + +
Sbjct: 203 -DLFLRFLQSVFNVMFSIVKAGGSFYVFHADSEGENFRRAIREAGFKIAQCCIWVKDSLV 261

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
              +    Q  HE  ++               A    N D +  + W             
Sbjct: 262 MGRQDY--QWQHEPCLYGWKPG----------AAHFWNSDRKQTTIWNFDKPK------- 302

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
               ++HPT KP AL+   + +STK GDI++D F GSG++    ++  R   G+E+   Y
Sbjct: 303 --ANRIHPTMKPIALMVYPITNSTKNGDIVVDVFSGSGSTIMACQQTDRIGYGMEIDPKY 360

Query: 258 IDIATKRIASVQPLGNI 274
           +    +R  ++ P   I
Sbjct: 361 VSATVRRYMAMFPQQPI 377


>gi|308272266|emb|CBX28872.1| Modification methylase BglII [uncultured Desulfobacterium sp.]
          Length = 342

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 112/291 (38%), Gaps = 40/291 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+ + +L+ +P +S+ L+   PPYN+                    ++K    E Y 
Sbjct: 46  LYSGDCLELLKTIPDESLKLVVTSPPYNIGK-----------------EYEKRLKLERYI 88

Query: 83  AFTRAWLLACRRVLKPNGTL-WVIGSYHNIFRI-------GTMLQNLNFWILNDIVWRKS 134
               A +  C R L P+G++ W +G+Y +   I         +   L   + N I+W   
Sbjct: 89  DQQAAVIRECVRCLSPDGSICWQVGNYVDNGAIIPLDTMLYPIFTGLGLSMRNRIIWHFE 148

Query: 135 NPMPNFRGRRFQNAHETLIWASP------------SPKAKGYTFNYDALKAANEDVQMRS 182
           + +     RRF   +ET+IW +              P+       +    A         
Sbjct: 149 HGLHCS--RRFSGRYETIIWFTKSDEYIFNLDPIRVPQKYPGKKYFKGPNAGKYSCNPLG 206

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
                +        N   +  HP Q P  L+ R+++S T  GD + DPF G+GTS   A 
Sbjct: 207 KNPGDLWVIPNVKSNHVEKTGHPCQFPVELIERLVLSMTNEGDRVFDPFLGTGTSIIAAI 266

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
           + +R   G E    YI++A  RI   +  G +    +     +P  A N L
Sbjct: 267 RHKRRGAGAETVTKYINLARDRIGQ-EIAGTLRTRPMDKPIYDPEEAGNSL 316


>gi|193084125|gb|ACF09792.1| DNA methylase N-4/N-6 [uncultured marine crenarchaeote KM3-153-F8]
          Length = 249

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 57/266 (21%), Positives = 104/266 (39%), Gaps = 28/266 (10%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
            S  E  +++  G+ + ++  +P+ SV L    PPYN+ +                D  D
Sbjct: 2   QSRIELINRVNCGDVMELMSHIPSNSVHLAITSPPYNVGIEY--------------DKHD 47

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN-------IFRIGTMLQNLNFWIL 126
              ++E Y  +        +RVLK  G   +                   +L+ L F   
Sbjct: 48  DKMNYEQYLDWLSKIWRETKRVLKDGGRFALNIGPTGIRDFKPLHHDSANILRKLGFIFR 107

Query: 127 NDIVWRKSNPM---PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
            +I+W K   +        +   N H    W      +K        L+  N    +   
Sbjct: 108 TEILWYKQTMLKRTAWGSWKSPSNPHIIPSWEYVLIFSKK----SLKLEGDNTKADITKQ 163

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
             +    G  ++  +     HP   PE L+ R++   +   + +LD F G+GT   VAKK
Sbjct: 164 EFLNCSDGYWKIAPEKKRNKHPAPFPEELIYRLIKYYSFKDNTVLDMFGGTGTVAYVAKK 223

Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQ 269
            +R+FI I++ ++Y + A+ R+ ++Q
Sbjct: 224 NQRNFIHIDISKEYCETASDRLETLQ 249


>gi|76786905|ref|YP_329365.1| prophage LambdaSa04, DNA methylase [Streptococcus agalactiae A909]
 gi|76561962|gb|ABA44546.1| prophage LambdaSa04, DNA methylase [Streptococcus agalactiae A909]
          Length = 412

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 54/268 (20%), Positives = 106/268 (39%), Gaps = 37/268 (13%)

Query: 20  KDKIIKGNSISVL---EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K ++I G+S       + L  K  +LI  DPPYN+ +     +  +          D  S
Sbjct: 165 KHRVICGDSTEAETYEQLLGDKKANLIVTDPPYNVDVEETAGKILN----------DNMS 214

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             + Y  F           ++ + +++V  +           ++  F++    +W+K++ 
Sbjct: 215 DRDFY-QFLFDMFTQVESHMEADASIYVFHADTEGLNFRKAFKDAGFYLSGSCIWKKNSL 273

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +       +Q  HE  ++         +            D +  + W       S    
Sbjct: 274 V--LGRSPYQWQHEPCLFGWKQKGKHQWF----------SDRKQTTIWEYDRPKSS---- 317

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                K HPT KP  L++  + +S+  G ++ DPF GSG++   A +  R   GIE+ + 
Sbjct: 318 -----KDHPTMKPIQLMAYPIQNSSMRGTLVFDPFLGSGSTLMAADQTGRVCYGIELDEK 372

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRT 284
           ++D+  KR   ++   N +++VL    T
Sbjct: 373 FVDVIVKRY--MESTSNRDVSVLRNGET 398


>gi|153814252|ref|ZP_01966920.1| hypothetical protein RUMTOR_00461 [Ruminococcus torques ATCC 27756]
 gi|145848648|gb|EDK25566.1| hypothetical protein RUMTOR_00461 [Ruminococcus torques ATCC 27756]
          Length = 418

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 98/248 (39%), Gaps = 35/248 (14%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K ++I G+SI   +  + +  +  +L+  DPPYN+ +     +  +              
Sbjct: 165 KHRVICGDSILPETYDKLMDGQKANLVLTDPPYNVNVEETAGKIKN-----------DNM 213

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E +  F  A  +   + ++ + +++V  +           ++  F++    +W+K+  
Sbjct: 214 PDEDFYKFLFAAFVNMEQSMEQDASIYVFHADTEGLNFRKAFKDAGFYLSGCCIWKKNAL 273

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +       +Q  HE  ++         +            D +  + W       S    
Sbjct: 274 V--LGRSPYQWQHEPCLFGWKKGGKHQWY----------SDRKQTTIWEYDRPKAS---- 317

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                K HPT KP AL++  + +S     I+LDPF GSG++    ++  R   GIE+ + 
Sbjct: 318 -----KDHPTMKPVALMAYPIQNSCMSNCIVLDPFLGSGSTLIACEQTHRICYGIELDEK 372

Query: 257 YIDIATKR 264
           ++D+   R
Sbjct: 373 FVDVIVNR 380


>gi|53803169|ref|YP_115059.1| prophage LambdaMc01, DNA methyltransferase [Methylococcus
           capsulatus str. Bath]
 gi|53756930|gb|AAU91221.1| prophage LambdaMc01, DNA methyltransferase [Methylococcus
           capsulatus str. Bath]
          Length = 421

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 95/247 (38%), Gaps = 30/247 (12%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +++ G++    S    L    VD++F DPPYN+               A+ +       
Sbjct: 173 HRLLCGDATVADSYARLLAGDPVDMVFTDPPYNVNYANSAKDKMRGKDRAILNDNLG--- 229

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            + +  F  A L     V    G ++V  S   +  +    +         I+W K+   
Sbjct: 230 -DGFHDFLLAALTP--TVANCRGAIYVAMSSSELDTLQAAFRAAGGHWSTFIIWAKNTFT 286

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                   Q  +E +++  P    + +  + D           R+D              
Sbjct: 287 LGRADY--QRQYEPILYGWPEGAQRHWCGDRDQGDVWQIKKPQRND-------------- 330

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
                LHPT KP  L+ R + +S++PG ++LDPF GSGT+   A+K  R    IE+   Y
Sbjct: 331 -----LHPTMKPVELVERAIRNSSRPGAVVLDPFGGSGTTLIAAEKAGRVARLIELDPKY 385

Query: 258 IDIATKR 264
           +D+  +R
Sbjct: 386 VDVIVRR 392


>gi|254188186|ref|ZP_04894698.1| DNA methylase [Burkholderia pseudomallei Pasteur 52237]
 gi|157935866|gb|EDO91536.1| DNA methylase [Burkholderia pseudomallei Pasteur 52237]
          Length = 258

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 61/259 (23%), Positives = 102/259 (39%), Gaps = 32/259 (12%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDA----- 67
           +    D++   +++++   LP  S+D++F DPPY    L  + +   P    +++     
Sbjct: 14  LSPLLDRLHAMDALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSTKYINSDTKTV 73

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
            TD         A+  +  AWL  CRR LKP G L     +  +  +  ++Q     +  
Sbjct: 74  YTDFESDNMDQRAWAFWCHAWLSECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILRG 133

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
             VW K+      R   F    E ++W               A + A  D ++    + P
Sbjct: 134 VAVWDKTPGRTRPRRGGFAQQAEFVVW---------------ASRGAMRDCEVYLPGVFP 178

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                         K H T+KP   ++R +V     G ++ D F GSGT  A A++    
Sbjct: 179 --------CRLPLPKQHVTEKPLD-IAREVVRLVPAGGVVCDLFAGSGTFLAAAREAGLH 229

Query: 248 FIGIEMKQDYIDIATKRIA 266
           +IG E    Y  IA  R+ 
Sbjct: 230 WIGCETNAAYHAIALHRLG 248


>gi|72537706|ref|YP_293736.1| DNA methylase [Burkholderia phage phi52237]
 gi|72398396|gb|AAZ72631.1| DNA methylase [Burkholderia phage phi52237]
          Length = 269

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 61/259 (23%), Positives = 102/259 (39%), Gaps = 32/259 (12%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDA----- 67
           +    D++   +++++   LP  S+D++F DPPY    L  + +   P    +++     
Sbjct: 25  LSPLLDRLHAMDALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSTKYINSDTKTV 84

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
            TD         A+  +  AWL  CRR LKP G L     +  +  +  ++Q     +  
Sbjct: 85  YTDFESDNMDQRAWAFWCHAWLSECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILRG 144

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
             VW K+      R   F    E ++W               A + A  D ++    + P
Sbjct: 145 VAVWDKTPGRTRPRRGGFAQQAEFVVW---------------ASRGAMRDCEVYLPGVFP 189

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                         K H T+KP   ++R +V     G ++ D F GSGT  A A++    
Sbjct: 190 --------CRLPLPKQHVTEKPLD-IAREVVRLVPAGGVVCDLFAGSGTFLAAAREAGLH 240

Query: 248 FIGIEMKQDYIDIATKRIA 266
           +IG E    Y  IA  R+ 
Sbjct: 241 WIGCETNAAYHAIALHRLG 259


>gi|315029926|gb|EFT41858.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX4000]
          Length = 422

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 105/248 (42%), Gaps = 13/248 (5%)

Query: 23  IIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           ++ G++     V + L  K  +L+  DPPYN+ +       + S  + +    +   S E
Sbjct: 175 LLCGDATKPSDVEKLLQGKKANLVVTDPPYNVAVKSDNKELNESGREKI---MNDDMSDE 231

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            +D F  +        ++ +  ++V             +     ++ +  +W K+N    
Sbjct: 232 EFDQFLMSVFQNYSHAMRDDSAIYVFHGSSYQREFENSMNAAGIFVRSQCIWVKNNATFG 291

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           +   R+Q  HE + +A    +A  +  +        +D+       +P  +  +  R+  
Sbjct: 292 WSQYRWQ--HEPVFYAHKKKQAPAWYGDRKQTTVWQDDL----VEDLPA-TIWKVPRDDV 344

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
               HPTQKP +L++  + +S+K  DI+LD F GSG++    ++L R    +E+   + D
Sbjct: 345 ATYYHPTQKPLSLIAIPVRNSSKRQDIVLDLFGGSGSTLMTCEQLNRICYTLELDPLFCD 404

Query: 260 IATKRIAS 267
           +  +R   
Sbjct: 405 VIIERFEK 412


>gi|150016508|ref|YP_001308762.1| DNA methylase N-4/N-6 domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149902973|gb|ABR33806.1| DNA methylase N-4/N-6 domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 410

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 101/251 (40%), Gaps = 32/251 (12%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K++++ G+S     + + +  +   L+F DPPYN+   G       +  D +T   D  S
Sbjct: 168 KNRLMCGDSTVKEDIEKLINGQKAKLVFTDPPYNVNYEG-------ATADKLTIENDNMS 220

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E Y  F           ++    ++V  +           +     +   I+W K+  
Sbjct: 221 QDEFY-EFLSKVFNNYYENMEEGAPIYVCHADSEGENFRRTFREAGIKLAQCIIWVKNAF 279

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +   +    Q  HE +++     KA  +           +D    + W IP  +      
Sbjct: 280 VMGRQDY--QWKHEPILYGWKEGKAHYFV----------DDRTQDTVWEIPKPT------ 321

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                  HPT KP AL +R + +S+KP D+++D F GSG++   A +L R    +E+ + 
Sbjct: 322 ---RNAEHPTMKPLALCARAIKNSSKPNDLVIDLFGGSGSTLMAATELNRVCYTMEVDKK 378

Query: 257 YIDIATKRIAS 267
           Y D+   R  +
Sbjct: 379 YADVIVLRYIN 389


>gi|217031482|ref|ZP_03436987.1| hypothetical protein HPB128_21g40 [Helicobacter pylori B128]
 gi|298736790|ref|YP_003729320.1| putative adenine-specific DNA-methyltransferase [Helicobacter
           pylori B8]
 gi|216946682|gb|EEC25278.1| hypothetical protein HPB128_21g40 [Helicobacter pylori B128]
 gi|298355984|emb|CBI66856.1| putative adenine-specific DNA-methyltransferase [Helicobacter
           pylori B8]
          Length = 252

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 95/254 (37%), Gaps = 27/254 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G++ SVLE       DL    PPYNL +  Q                + F +++ Y 
Sbjct: 12  LYHGDA-SVLETFEKGFYDLCVTSPPYNLSIEYQGS--------------NDFRAYDDYL 56

Query: 83  AFTRAWLLACRRVLKPNGTLW--------VIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            + + WL  C    K    L           G       I  + +   +   N I+W +S
Sbjct: 57  NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNES 116

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N         +  A       + +P      F  +  K   +   M  +  +   +G   
Sbjct: 117 NISRRTAWGSWLQASTP---YAIAPVELIVVFYKNEYKRKKQTSTMSKEEFLLYTNGLWN 173

Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
              +  ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E+
Sbjct: 174 FSGESKKRLKHPAPFPRELPRRCIQLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEI 233

Query: 254 KQDYIDIATKRIAS 267
           +++Y +++ KRI  
Sbjct: 234 EKEYCELSKKRILE 247


>gi|269104405|ref|ZP_06157101.1| N6 adenine-specific DNA methyltransferase [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268161045|gb|EEZ39542.1| N6 adenine-specific DNA methyltransferase [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 224

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 57/249 (22%), Positives = 109/249 (43%), Gaps = 29/249 (11%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + + K +++S L+++  +S+DL+  DPPY      +       L  +   S D F    
Sbjct: 5   TNHVYKSDALSWLKEIQDQSIDLVITDPPYESLEKHRAVGTTTRLKQSKGSSNDWFRILP 64

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
             D F    L    RVLK N   ++      +F +  + + + F     IVW K      
Sbjct: 65  N-DQF-EPLLQEIYRVLKKNSHFYLFCDQETMFIVKPIAEKIGFKFWKPIVWDKC---AI 119

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
             G  +++ +E +++     +                      D  +P     +R+    
Sbjct: 120 GMGYHYRSRYEFILFFEKGKRKLN-------------------DLSVPDVLEFKRVW--- 157

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
             + +PT+KP  LL  ++  S++P DI++DPFFGSG++   A +L+R +IG ++  +   
Sbjct: 158 --RGYPTEKPVELLKTLIAQSSEPNDIVIDPFFGSGSTLVAASQLQRYYIGCDVSDNAHQ 215

Query: 260 IATKRIASV 268
             ++RI+ +
Sbjct: 216 HFSQRISEL 224


>gi|302035484|ref|YP_003795806.1| site-specific DNA-methyltransferase N-4/N-6 (phage related)
           [Candidatus Nitrospira defluvii]
 gi|300603548|emb|CBK39878.1| Site-specific DNA-methyltransferase N-4/N-6 (phage related)
           [Candidatus Nitrospira defluvii]
          Length = 413

 Score =  152 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 57/249 (22%), Positives = 99/249 (39%), Gaps = 34/249 (13%)

Query: 21  DKIIKGNSI-----SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
            +++ G+S       VL  L    VD++F DPPYN+               A+ +     
Sbjct: 173 HRLLCGDSTVAESYDVL--LQGSPVDMVFTDPPYNVNYANSAKDKMRGKDRAILNDNLG- 229

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
              + +  F  A L     V    G ++V  S   +  + +  +         I+W K+ 
Sbjct: 230 ---DGFYDFLLAALTQM--VTHCRGGIYVAMSSSELDVLQSAFRAAGGKWSTFIIWAKNT 284

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
                     Q  +E +++  P    + +  + D     N     ++D            
Sbjct: 285 FTLGRADY--QRQYEPILYGWPEGAQRHWCGDRDQGDVWNIKKPQKND------------ 330

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                  LHPT KP  L+ R + +S++PG+++LDPF GSGT+   A+K  R    IE+  
Sbjct: 331 -------LHPTMKPVELVERAIRNSSRPGNVVLDPFGGSGTTLIAAEKSGRVARLIELDP 383

Query: 256 DYIDIATKR 264
            Y+D+  +R
Sbjct: 384 KYVDVIVRR 392


>gi|257088834|ref|ZP_05583195.1| predicted protein [Enterococcus faecalis CH188]
 gi|256997646|gb|EEU84166.1| predicted protein [Enterococcus faecalis CH188]
 gi|315160596|gb|EFU04613.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0645]
 gi|315579442|gb|EFU91633.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0630]
          Length = 230

 Score =  152 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 105/248 (42%), Gaps = 26/248 (10%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   + +  ++++P KSVDL+  DPPY L   G+          +  +  +  ++   
Sbjct: 4   NKIYNEDCLEGMKRIPDKSVDLVIIDPPY-LMKQGKSGGAFGRDKRSYHNEIESMTN--- 59

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
              F R  L    RV+K    L+V  S   +             + + + W K+NP+P  
Sbjct: 60  --DFERKVLDELVRVMKKIN-LYVWCSKDQLQGYINYFSQKGCTL-DLLTWHKTNPVPTC 115

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G+   +    L +     K  G                 +  + +   +  ++   +  
Sbjct: 116 NGKYLSDTEYLLFFKEKGVKVFG-------------SYSTKKKFYVTPTNKKDKDLYQ-- 160

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
              HPT KP  ++  ++++S++  +++LD F GSGT+   A    R FIG E +++Y D 
Sbjct: 161 ---HPTVKPLNIIENLVINSSQENEVVLDCFIGSGTTAVAAINTNRQFIGFEKEKEYFDT 217

Query: 261 ATKRIASV 268
           A +RI  +
Sbjct: 218 ANRRIEEI 225


>gi|307636957|gb|ADN79407.1| adenine specific DNA methyltransferase [Helicobacter pylori 908]
 gi|325995548|gb|ADZ50953.1| adenine specific DNA methyltransferase [Helicobacter pylori 2018]
 gi|325997144|gb|ADZ49352.1| Type II DNA modification enzyme/ methyltransferase [Helicobacter
           pylori 2017]
          Length = 252

 Score =  152 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 95/254 (37%), Gaps = 27/254 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G++ SVLE       DL    PPYNL +  Q                + F +++ Y 
Sbjct: 12  LYHGDA-SVLETFEKGFYDLCVTSPPYNLSIEYQGS--------------NDFRAYDDYL 56

Query: 83  AFTRAWLLACRRVLKPNGTLW--------VIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            + + WL  C    K    L           G       I  + +   +   N I+W +S
Sbjct: 57  NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNES 116

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N         +  A       + +P      F  +  K   +   M  +  +   +G   
Sbjct: 117 NISRRTAWGSWLQASAP---YAIAPVELIVVFYKNEYKRKKQTSTMSKEEFLLYTNGLWN 173

Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
              +  ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E+
Sbjct: 174 FSGESKKRLKHPAPFPRELPKRCIQLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEI 233

Query: 254 KQDYIDIATKRIAS 267
           +++Y +++ KRI  
Sbjct: 234 EKEYCELSKKRILE 247


>gi|227498320|ref|ZP_03928470.1| methylase [Acidaminococcus sp. D21]
 gi|226903782|gb|EEH89700.1| methylase [Acidaminococcus sp. D21]
          Length = 412

 Score =  152 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 99/250 (39%), Gaps = 35/250 (14%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            ++I G++    + +  +  K  +L+  DPPYN+ +     +  +          D    
Sbjct: 172 HRVICGDATLPETYIRLMDGKKANLVLTDPPYNVDVEETAGKIKN----------DNMPD 221

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            + Y  F  +  +   + ++ + +++V  +           ++  F++    +W+K+  +
Sbjct: 222 DKFY-QFLFSAFVNMEQNMERDASIYVFHADTQGLNFRKAFKDAGFYLSGCCIWKKNALV 280

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                  +Q  HE  ++         +            D +  + W       S     
Sbjct: 281 --LGRSPYQWQHEPCLFGWKLNGKHQWY----------SDRKQTTIWEYDRPKAS----- 323

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
               K HPT KP  L++  + +S+    I+LDPF GSG++    ++  R   GIE+ + +
Sbjct: 324 ----KEHPTMKPVVLMAYPIENSSMSHCIVLDPFLGSGSTLMACQQTDRICYGIELDEKF 379

Query: 258 IDIATKRIAS 267
           +D+  KR  S
Sbjct: 380 VDVIVKRYIS 389


>gi|194435302|ref|ZP_03067516.1| DNA methyltransferase [Shigella dysenteriae 1012]
 gi|194416451|gb|EDX32606.1| DNA methyltransferase [Shigella dysenteriae 1012]
          Length = 287

 Score =  152 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 57/243 (23%), Positives = 99/243 (40%), Gaps = 53/243 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R  +  +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195

Query: 256 DYI 258
            Y 
Sbjct: 196 QYH 198


>gi|108562690|ref|YP_627006.1| type II DNA modification enzyme [Helicobacter pylori HPAG1]
 gi|107836463|gb|ABF84332.1| type II DNA modification enzyme [Helicobacter pylori HPAG1]
          Length = 252

 Score =  152 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 96/254 (37%), Gaps = 27/254 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G++ SVLE       DL    PPYNL +  Q                + F +++ Y 
Sbjct: 12  LYHGDA-SVLETFEKGFYDLCVTSPPYNLSIEYQGS--------------NDFRAYDDYL 56

Query: 83  AFTRAWLLACRRVLKPNGTLW--------VIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            + + WL  C    K    L           G       I  + +   +   N I+W +S
Sbjct: 57  NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAVAKECGWKYQNTIIWNES 116

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N         +  A    +  + +P      F  +  K   +   M  +  +   +G   
Sbjct: 117 NISRRTAWGSWLQAS---VPYAIAPVELIVVFYKNEYKRKKQTSTMSREEFLLYTNGLWN 173

Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
              +  ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E+
Sbjct: 174 FSGESKKRLKHPAPFPRELPRRCIQLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEI 233

Query: 254 KQDYIDIATKRIAS 267
           +++Y +++ KRI  
Sbjct: 234 EKEYCELSKKRILE 247


>gi|167039889|ref|YP_001662874.1| DNA methylase N-4/N-6 domain-containing protein [Thermoanaerobacter
           sp. X514]
 gi|300915302|ref|ZP_07132616.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter sp. X561]
 gi|307724787|ref|YP_003904538.1| DNA methylase N-4/N-6 domain-containing protein [Thermoanaerobacter
           sp. X513]
 gi|166854129|gb|ABY92538.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter sp. X514]
 gi|300888578|gb|EFK83726.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter sp. X561]
 gi|307581848|gb|ADN55247.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter sp. X513]
          Length = 412

 Score =  152 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 101/269 (37%), Gaps = 39/269 (14%)

Query: 20  KDKIIKGNSI-----SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           K +++ G+S      ++L  +  K  +L+  DPPYN+   G   +  +            
Sbjct: 166 KHRLVCGDSTKKETYNIL--MEGKVANLVVTDPPYNVNYEGTAGKIKN-----------D 212

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
             + +A+  F          VL  +G+++V  +            +  F++    +W+K 
Sbjct: 213 NMANDAFYQFLLDAFKNIESVLASDGSIYVFHADTEGLNFRKAFVDAGFYLSGTCIWKKQ 272

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           + +       +Q  HE +++         +            D +  + W       +  
Sbjct: 273 SLV--LGRSPYQWQHEPVLFGWKKKGKHLWY----------SDRKQSTIWEFDKPKKN-- 318

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                    HPT KP AL++  +++S+    I+LDPF GSG++    ++  R    IE+ 
Sbjct: 319 -------ADHPTMKPIALIAYPIMNSSLTNSIVLDPFGGSGSTLIACEQTDRICYTIELD 371

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKR 283
           + Y D+  KR             +   +R
Sbjct: 372 EKYCDVIVKRYIEQVGTDKDVYVIREKRR 400


>gi|291556505|emb|CBL33622.1| DNA modification methylase [Eubacterium siraeum V10Sc8a]
          Length = 412

 Score =  152 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 52/268 (19%), Positives = 101/268 (37%), Gaps = 36/268 (13%)

Query: 20  KDKIIKGNSI--SVLEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G+S    V E L      +L+  DPPYN+   G   +  +              
Sbjct: 167 RHRLVCGDSTKPEVYEILMDGTKANLVITDPPYNVNYEGSAGKIKN-----------DNM 215

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           + E +  F  A       V+  + +++V  +            +  F++    +W+K + 
Sbjct: 216 AGEKFYEFLLAAFKNMESVMAADASIYVFHADTEGLNFRRAFADAGFYLSGCCIWKKQSL 275

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +       +Q  HE +++        G+  N               ++  P  +G     
Sbjct: 276 V--LGRSPYQWQHEPVLY--------GWKKNGRHQWYTGRKETTIWEFDKPKKNGE---- 321

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                  HPT KP  LL+  + +S+    ++LDPF GSG++    ++  R    IE+ + 
Sbjct: 322 -------HPTMKPIPLLAYPIGNSSMANSVVLDPFGGSGSTLIACEQTDRICRTIELDEK 374

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRT 284
           + D+   R    Q      ++VL   RT
Sbjct: 375 FCDVIVNRYIE-QAGSADSVSVLRDGRT 401


>gi|317484071|ref|ZP_07943003.1| DNA methylase [Bilophila wadsworthia 3_1_6]
 gi|316924677|gb|EFV45831.1| DNA methylase [Bilophila wadsworthia 3_1_6]
          Length = 248

 Score =  152 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 55/259 (21%), Positives = 102/259 (39%), Gaps = 40/259 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ------------LNGQLYRPDHSLVDAVT 69
            + +G+++ +L  LP   +D +  DPPY+                 Q           + 
Sbjct: 11  TLYQGDALGILATLPDAVMDAVLTDPPYSSGGVTMGARQADPAQKYQQSGTKRQYPPMLG 70

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
           D+ D+ S    +  +   WL  C R+ +    L V   +  +  +   +Q   +     I
Sbjct: 71  DAKDQRS----WTMWCTLWLGECWRIAREGAPLMVFTDWRQLPALSDAVQAAGWAWRGVI 126

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
            W K +  P     R Q   E +++A+                 A+    +   +  P+ 
Sbjct: 127 AWDKRSARPQIGKFRQQC--EYVLFATK------------GRFIAHTRACLPGVYSYPVI 172

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
                      +K+H T KP AL+  +L + T P   +LDPF G G+ G    +  R ++
Sbjct: 173 ---------PVQKVHLTSKPVALIEDLL-AVTAPHASVLDPFMGGGSVGEACIRTGRGYV 222

Query: 250 GIEMKQDYIDIATKRIASV 268
           G+E+ ++Y DI+  R+ +V
Sbjct: 223 GMELSREYYDISRTRLTAV 241


>gi|325297643|ref|YP_004257560.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides
           salanitronis DSM 18170]
 gi|324317196|gb|ADY35087.1| DNA methylase N-4/N-6 domain protein [Bacteroides salanitronis DSM
           18170]
          Length = 262

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 57/266 (21%), Positives = 96/266 (36%), Gaps = 38/266 (14%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +DKI   + +  ++++  +SVD + AD PY +     L R + +        WD+     
Sbjct: 3   QDKIYHMDCLEGMKQIADRSVDAVIADLPYGV-----LNRQNGAA------RWDQKIP-- 49

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                         R+ KP+  + +      +F    +L     W  N +  +       
Sbjct: 50  -----LAPLWEQYLRITKPDSPIILFA--QGMFTAELVLSQPKLWRYNLVWHKDRVSGHL 102

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS----------------- 182
              R     HE ++                  +  N D +                    
Sbjct: 103 NANRMPMRQHEDIVVFYRKLPVYHPQMIPCPPEKRNHDRRKTEGFTNRCYGDMKLAPVRI 162

Query: 183 -DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
            D   P    S    +  G   HPTQKP AL+  ++ + T  GD++LD   GSGT+   A
Sbjct: 163 ADDKYPTSVVSVPKEHCTGAFYHPTQKPVALIEYLIRTYTDEGDLVLDNCIGSGTTAIAA 222

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIAS 267
            +  R +IG E+ + Y +IA +RI  
Sbjct: 223 LRTGRHYIGFEIDKSYCEIAEQRIRE 248


>gi|308063125|gb|ADO05012.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter pylori
           Sat464]
          Length = 252

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 95/254 (37%), Gaps = 27/254 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+ +SVL+       DL    PPYNL +  Q                + F +++ Y 
Sbjct: 12  LYHGD-VSVLKTFEKGFYDLCITSPPYNLSIEYQGS--------------NDFRAYDDYL 56

Query: 83  AFTRAWLLACRRVLKPNGTLW--------VIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            + + WL  C    K    L           G       I  + +   +   N I+W +S
Sbjct: 57  NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNES 116

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N         +  A       + +P      F  +  K   +   +  +  +   +G   
Sbjct: 117 NISRRTAWGSWLQASAP---YAIAPVELIVVFYKNEYKCQKQTSTISKEEFLLYTNGLWS 173

Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
              +  ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E+
Sbjct: 174 FSGESKKRLKHPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEI 233

Query: 254 KQDYIDIATKRIAS 267
           +++Y +++ KRI  
Sbjct: 234 EKEYCELSKKRILE 247


>gi|295090203|emb|CBK76310.1| DNA modification methylase [Clostridium cf. saccharolyticum K10]
          Length = 274

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 56/267 (20%), Positives = 110/267 (41%), Gaps = 29/267 (10%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            ++ ++I +G+ + ++ +LP  +V LI  DPPY ++   Q     H +++          
Sbjct: 7   QDYINQIFQGDCLHLMGELPDGAVSLILTDPPYGIRYQNQFAASPHPVLEGDAGI----- 61

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN- 135
               Y+ F R       R+L P+   +    +         L+   F + N +V  K   
Sbjct: 62  ---DYERFAR----ESYRILAPDSHAYFFTRFDCYPYHYQCLKTAGFAVKNCLVIEKGTL 114

Query: 136 -PMPNFRGRRFQNAHETLIWASPSPKAKGYT------------FNYDALKAANEDVQMRS 182
             + + RG    N+ E +I+     KA  +T             +     +A    +  +
Sbjct: 115 GGIGDLRGSFANNS-EWVIFCQKGRKAFRHTTLLQNRKKAGTQCHKGRNPSARYKTRFPA 173

Query: 183 DWLIPICSGSER--LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
            W  P    +    +  K  +  HPT K    L+ ++  S+ PGD++ D F G+G++   
Sbjct: 174 CWFGPEYPKATYNSMWQKQHQIFHPTIKNVECLAWLIEISSNPGDLVFDGFMGTGSTALA 233

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIAS 267
             +  R+F+G E+   Y  +A +R+ +
Sbjct: 234 VLETNRTFLGAEIFPAYWQVAQQRLTA 260


>gi|312868808|ref|ZP_07728997.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus oris PB013-T2-3]
 gi|311095651|gb|EFQ53906.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus oris PB013-T2-3]
          Length = 321

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 73/288 (25%), Positives = 122/288 (42%), Gaps = 37/288 (12%)

Query: 7   LAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           + +     S+   +D+ I G+S  ++ + P +  DL   DPPYNL  +       H    
Sbjct: 26  VTLQPGPVSLTAIRDRSINGDSFQLVRQFPDQFADLALVDPPYNLDKHYDGLNFKHQ--- 82

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                     S + Y  +T+ W+   +  LKP+ +L+V   +     +  +L   NF + 
Sbjct: 83  ----------STDEYQEYTQRWIDLVKPKLKPHASLYVFADWQTSIALAPVL-AANFTVK 131

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN------YDALKAANEDVQM 180
           N I W++           ++N  E + + +     K YTFN         + A   +   
Sbjct: 132 NRITWQREKGRG--AKGNWKNGMEDIWFLTMDD--KKYTFNVDQVKQRRQVIAPYRENGQ 187

Query: 181 RSDWLIP-------------ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
             DW                    S    +      HPTQKPE LL++++++S+ PGD I
Sbjct: 188 AKDWHESAAGRFRDTMPSNFWDDISIPYWSMAENTGHPTQKPEKLLAKLILASSNPGDTI 247

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           LDPF G+G+S   AKKL R F+G+E  + Y      R+ +     +I+
Sbjct: 248 LDPFAGAGSSLVTAKKLGRHFVGVEQSRLYTAWGVYRLQAADRDQSIQ 295


>gi|260751833|ref|YP_003232554.1| putative DNA modification methylase [Escherichia coli O26:H11 str.
           11368]
 gi|462649|sp|Q04845|MTC1_CITFR RecName: Full=Modification methylase CfrBI; Short=M.CfrBI; AltName:
           Full=N(4)- cytosine-specific methyltransferase CfrBI
 gi|40477|emb|CAA41012.1| nicotinamide methyltransferase [Citrobacter freundii]
 gi|257757380|dbj|BAI28879.1| putative DNA modification methylase [Escherichia coli O26:H11 str.
           11368]
          Length = 376

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 59/269 (21%), Positives = 99/269 (36%), Gaps = 43/269 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + +++GN    L+KLP +SV+L+F  PPY                      + ++ +++ 
Sbjct: 113 NMLLQGNCAETLKKLPDESVNLVFTSPPY----------------YNAKPEYSEYHTYDE 156

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIG--------SYHN--------IFRIGTMLQNLNFW 124
           Y +  R+ +  C RVL   G  +VI         +  N         F +  +     + 
Sbjct: 157 YLSLLRSVIKECHRVLSE-GRFFVINVSPVLIRRASRNEASKRIAVPFDLHRLFIEEGYE 215

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
            ++DI W K        GR  + A +             Y   Y        D  +R+  
Sbjct: 216 FIDDIHWVKPEGAGWALGRGRRFAADRNPLQYKPVPVTEYILVYRKKTDKLIDWNIRNHH 275

Query: 185 LI----------PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
                            +    N    + HP   P  L  R++   +   D+ILDPF GS
Sbjct: 276 SKEDVFDSKIGDDYEKTNLWKINPSRNRKHPATFPYGLAERVIKYYSFKNDVILDPFAGS 335

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           GT+   A  L R F+  E+ + YID+  +
Sbjct: 336 GTTAKAAIDLGRRFVMCEISKQYIDLIIE 364


>gi|331090243|ref|ZP_08339131.1| hypothetical protein HMPREF1025_02714 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330402189|gb|EGG81761.1| hypothetical protein HMPREF1025_02714 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 421

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 50/283 (17%), Positives = 114/283 (40%), Gaps = 43/283 (15%)

Query: 20  KDKIIKGNSI-----SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           K ++I G+SI     ++L  +  +  +L+  DPPYN+ +     +  +          D 
Sbjct: 168 KHRVICGDSILPETYNIL--MDGRKANLVLTDPPYNVDVEETAGKIKN----------DN 215

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            +  E +  F  A  +   + ++ + +++V  +            +  F +    +W+K+
Sbjct: 216 MAD-EDFYRFLFAAFVNMEQNMEDDASIYVFHADTEGLNFRKAFADAGFKLSGCCIWKKN 274

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
             +       +Q  HE  ++         +            D +  + W       S  
Sbjct: 275 ALV--LGRSPYQWQHEPCLFGWKKGGKHQWY----------SDRKQTTIWEYDRPKAS-- 320

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                  K HPT KP AL++  + +S+  G ++L+PF GSG++    ++  R   G+E++
Sbjct: 321 -------KDHPTMKPIALMAYPVQNSSMMGCVVLNPFLGSGSTLMACEQTGRICYGVELE 373

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERG 297
           + ++D+   R   ++   +    +    R   ++++  L + G
Sbjct: 374 EKFVDVIVNRYMEMKGSADDVFVI----RNNVKISYRDLGKEG 412


>gi|317013708|gb|ADU81144.1| putative adenine-specific DNA-methyltransferase [Helicobacter
           pylori Gambia94/24]
          Length = 252

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 95/254 (37%), Gaps = 27/254 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G++ SVLE       DL    PPYNL +  Q                + F +++ Y 
Sbjct: 12  LYHGDA-SVLETFEKGFYDLCVTSPPYNLSIEYQGS--------------NDFRAYDDYL 56

Query: 83  AFTRAWLLACRRVLKPNGTLW--------VIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            + + WL  C    K    L           G       I  + +   +   N I+W +S
Sbjct: 57  NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAVAKECGWKYQNTIIWNES 116

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N         +  A       + +P      F  +  K   +   M  +  +   +G   
Sbjct: 117 NISRRTAWGSWLQASAP---YAIAPVELIVVFYKNEYKRKKQTSTMSKEEFLLYTNGLWN 173

Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
              +  ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E+
Sbjct: 174 FSGESKKRLKHPAPFPRELPRRCIQLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEI 233

Query: 254 KQDYIDIATKRIAS 267
           +++Y +++ KRI  
Sbjct: 234 EKEYCELSKKRILE 247


>gi|60418614|gb|AAX19734.1| Csp231I DNA methyltransferase [Citrobacter sp. RFL231]
          Length = 301

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 105/290 (36%), Gaps = 48/290 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLN-----------------------GQLYR 59
           +I  +SIS L+KL   S+DLI +D PY +  +                       G +++
Sbjct: 6   LINADSISELKKLEDNSIDLILSDIPYGIGADDWDVLHKNTNTAYLGNSPAQKQAGNVFK 65

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
                ++  +D+  K  +   Y  + + W     RVLKP GT +V        R    L+
Sbjct: 66  RRGKPINGWSDADKKIPA--EYYQWCQTWASEWLRVLKPGGTAFVFAGRRFAPRCIVALE 123

Query: 120 NLNFWILNDIVWRKSNP-------------------MPNFRGRRFQN---AHETLIWASP 157
           +  F   + + W K                         + G R  N     E +IW   
Sbjct: 124 DAGFNFRDMLSWIKPKATHRAQRLSIVYERRGMQDESLKWNGWRIGNLRPIFEPIIWCFK 183

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
            P       N         +     +      +  E   +     LH  QKP  LL  ++
Sbjct: 184 -PYKHTIADNVLEHNLGAYNQFAFEEITGHFNNTLEIGMSPKEGGLHDAQKPVKLLETLI 242

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
              T PG ++LDPF GSG++   A  L+R FI IE   +   I   R++ 
Sbjct: 243 SLVTIPGQVVLDPFAGSGSTAIAALNLKRDFIMIEKDPNIFSIMNDRLSK 292


>gi|269123833|ref|YP_003306410.1| DNA methylase N-4/N-6 domain-containing protein [Streptobacillus
           moniliformis DSM 12112]
 gi|268315159|gb|ACZ01533.1| DNA methylase N-4/N-6 domain protein [Streptobacillus moniliformis
           DSM 12112]
          Length = 391

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 60/273 (21%), Positives = 104/273 (38%), Gaps = 31/273 (11%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I   + +  +  +  +++DLI+ DPP+  Q   +L +    +     D W+     E 
Sbjct: 4   NDIYNLDCLDGMRNMYDETIDLIYLDPPFFTQRKHKL-KSKEGIEYEFNDIWN---DIEE 59

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  + R  L+  +RVLK +G ++V    +    I  +L+ +            +    + 
Sbjct: 60  YKEYLRIRLVEMKRVLKNDGNIFVHCDNNASHIIRLLLEEIFGVSNFVSEIIWTYKRWSN 119

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ--------------------- 179
             +   ++H+ +   S S + K      D     N D                       
Sbjct: 120 SKKGLLDSHQNIYHFSKSKEYKFNIIYTDYSPTTNVDQILQDRIRDGNGKSIYKRDENGK 179

Query: 180 ------MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
                  +   L  +               +PTQKP  LL  IL  ++  GDI+LDPF G
Sbjct: 180 VVYNRIKKGVPLGDVWEIPFLNPKAKERVGYPTQKPIQLLENILKIASNEGDIVLDPFLG 239

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           SGT    +K L R +IG ++  + I IA  R+ 
Sbjct: 240 SGTCAVASKLLNRRYIGFDINPNAISIAKYRLE 272


>gi|58040318|ref|YP_192282.1| DNA-methyltransferase (DNA-modification methylase) protein
           [Gluconobacter oxydans 621H]
 gi|58002732|gb|AAW61626.1| Probable DNA-methyltransferase (DNA-modification methylase) protein
           [Gluconobacter oxydans 621H]
          Length = 272

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 66/272 (24%), Positives = 115/272 (42%), Gaps = 42/272 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
             +I+G+  +VL ++P++SVD++   PPYNL +  + Y+                   +A
Sbjct: 12  HTLIRGDCTTVLRRMPSQSVDVVVTSPPYNLGVPYRTYQ--------------DRLPEDA 57

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVI--GSYHNIF---------RIGTMLQNLNFWILNDI 129
           Y  +      +  RV+K +G+ ++   GS    +         R   +LQN   WI +  
Sbjct: 58  YLDWLEDVCTSLCRVMKDDGSFFLNIAGSSSQPWMPFELMTRLRKLFVLQNHITWIKSIS 117

Query: 130 VWRKSNP--MPNFRGRRFQNAHETLIWASPSPKAK------GYTFNYDALKAANE---DV 178
           V   +     P    R     HE +   + +          G  F   +     +   D 
Sbjct: 118 VGEITYGHFKPLNSARFVNRNHEHVFHLTKTGNVPVQRLDAGVPFTDKSNIVRRQHITDR 177

Query: 179 QMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILV-SSTKPGDIILDPFFGSGT 236
           + R D W IP     E +R++  +  HP   P AL    +     +PG ++LDPF GSGT
Sbjct: 178 RCRGDTWFIPY----ETVRSRKEKFSHPGTFPVALPEACIRLHGLRPGGVLLDPFMGSGT 233

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +   A+++    IGI+    Y+++A KR+ + 
Sbjct: 234 TLVAAERMGCVGIGIDTDTSYVNVARKRVRAA 265


>gi|167757886|ref|ZP_02430013.1| hypothetical protein CLOSCI_00217 [Clostridium scindens ATCC 35704]
 gi|167664540|gb|EDS08670.1| hypothetical protein CLOSCI_00217 [Clostridium scindens ATCC 35704]
          Length = 417

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 102/279 (36%), Gaps = 38/279 (13%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G++     V   +  K  +LI  DPPY +              D +T   D   
Sbjct: 170 RHRLLCGDATRTEDVERLMDGKKANLIVTDPPYGVSFKSS---------DGLTIQNDSMK 220

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E Y  F           L+  G+ +V  +            +  F +    +W K++ 
Sbjct: 221 DEEFYT-FLLTAFQCMAEHLENGGSAYVFHADTEGLNFRKAFIDAGFHLAGVCIWVKNSL 279

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +        Q  HE +++         +  +       N D   R               
Sbjct: 280 VLGRSDY--QWQHEPVLFGWKKGGKHSWYSDRRQTTIWNYDKPKR--------------- 322

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                K HPT KP  LL   + +S++   IILD F GSG++    ++L R    +E+ + 
Sbjct: 323 ----NKNHPTSKPLDLLGYPICNSSQENAIILDTFGGSGSTLMACEQLNRICHMMELDEK 378

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
           Y  +  +R   V+  G+ E   +   R + ++ ++ LV+
Sbjct: 379 YASVILRRY--VEDTGDKENVYVI--RGDEQIPYSALVK 413


>gi|15611318|ref|NP_222969.1| type II DNA modification (methyltransferase [Helicobacter pylori
           J99]
 gi|4154765|gb|AAD05824.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
           pylori J99]
          Length = 252

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 95/254 (37%), Gaps = 27/254 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G++ SVLE       DL    PPYNL +  Q                + F +++ Y 
Sbjct: 12  LYHGDA-SVLETFEKGFYDLCVTSPPYNLSIEYQGS--------------NDFRAYDDYL 56

Query: 83  AFTRAWLLACRRVLKPNGTLW--------VIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            + + WL  C    K    L           G       I  + +   +   N I+W +S
Sbjct: 57  NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADITIVAKECGWKYQNTIIWNES 116

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N         +  A       + +P      F  +  K   +   M  +  +   +G   
Sbjct: 117 NISRRTAWGSWLQASAP---YAIAPVELIVVFYKNEYKRKKQTSTMSREEFLLYTNGLWN 173

Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
              +  ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E+
Sbjct: 174 FSGESKKRLKHPAPFPRELPRRCIQLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEI 233

Query: 254 KQDYIDIATKRIAS 267
           +++Y +++ KRI  
Sbjct: 234 EKEYCELSKKRILE 247


>gi|119386545|ref|YP_917600.1| DNA methylase N-4/N-6 domain-containing protein [Paracoccus
           denitrificans PD1222]
 gi|119377140|gb|ABL71904.1| DNA methylase N-4/N-6 domain protein [Paracoccus denitrificans
           PD1222]
          Length = 311

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 69/280 (24%), Positives = 121/280 (43%), Gaps = 55/280 (19%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + K +I   +++  + +LP +S+ LI   PPYN+                   S++K +S
Sbjct: 41  DAKAEIACEHNLKFMRRLPDESMSLIVTSPPYNIGK-----------------SYEKRTS 83

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNIFRI-------GTMLQNLNFWILNDI 129
            E Y     A +    R+L PNG++ W +G++ +   I         + ++    + N I
Sbjct: 84  QEKYVEDQAACIAEAVRLLAPNGSICWQVGNHVDSGEIFPLDILLYPLFKHHGLQLRNRI 143

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS------- 182
           VW   + +     +RF   HET++W + S     YTFN D ++  ++    +        
Sbjct: 144 VWTFGHGLHCQ--KRFSGRHETILWFTKSED---YTFNLDPVRVPSKYPNKKHFKGPNKG 198

Query: 183 -------------DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
                         W IP         N   +  HP Q P  L+ R++++ T  G+ +LD
Sbjct: 199 ELSSNPLGKNPSDVWDIPNVKS-----NHVEKTDHPCQFPIGLVERLVLALTNEGESVLD 253

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           P+ G G+S   A K  R   G ++ + Y+DIA  RI  ++
Sbjct: 254 PYLGVGSSAIAALKHGRHAYGCDLDKAYVDIAWDRIHQLR 293


>gi|307565394|ref|ZP_07627883.1| DNA (cytosine-5-)-methyltransferase [Prevotella amnii CRIS 21A-A]
 gi|307345844|gb|EFN91192.1| DNA (cytosine-5-)-methyltransferase [Prevotella amnii CRIS 21A-A]
          Length = 441

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 101/258 (39%), Gaps = 34/258 (13%)

Query: 21  DKIIKGNSIS----VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           ++++ G+  S    V+  +  +  D+I  DPPYN+   G          D++ +      
Sbjct: 192 NRLMCGDCRSKKDIVM-LMNGQVADMILTDPPYNVNYEGGGDSKLTIQNDSMEN------ 244

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             + +  F ++       ++K  G+ +V  +          ++   F I    VW K + 
Sbjct: 245 --DLFLRFLQSVFNVMFSIVKAGGSFYVFHADSEGENFRRAIREAGFKIAQCCVWVKDSL 302

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +   +    Q  HE  ++               A    N D +  + W            
Sbjct: 303 VMGRQDY--QWQHEPCLYGWKPG----------AAHFWNSDRKQTTIWNFDKPK------ 344

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                ++HPT KP AL++  + +S K GDI++D F GSG++    ++  R   G+E+   
Sbjct: 345 ---ANRIHPTMKPIALMAYPITNSAKNGDIVVDVFSGSGSTIMACQQTDRIGYGMEIDPK 401

Query: 257 YIDIATKRIASVQPLGNI 274
           Y+    +R  ++ P   +
Sbjct: 402 YVSATVRRYMAMFPQQPV 419


>gi|327474985|gb|AEA77090.1| M.StyI [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 376

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 59/269 (21%), Positives = 99/269 (36%), Gaps = 43/269 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + +++GN    L+KLP +SV+L+F  PPY                      + ++ +++ 
Sbjct: 113 NMLLQGNCAETLKKLPDESVNLVFTSPPY----------------YNAKPEYSEYHTYDE 156

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIG--------SYHN--------IFRIGTMLQNLNFW 124
           Y +  R+ +  C RVL   G  +VI         +  N         F +  +     + 
Sbjct: 157 YLSLLRSVIKECHRVLSE-GRFFVINVSPVLIRRASRNEASKRIAVPFDLHRLFIEEGYE 215

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
            ++DI W K        GR  + A +             Y   Y        D  +R+  
Sbjct: 216 FIDDIHWVKPEGAGWALGRGRRFAADRNPLQYKPVPVTEYILVYRKKTDKLIDWNIRNHH 275

Query: 185 LI----------PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
                            +    N    + HP   P  L  R++   +   D+ILDPF GS
Sbjct: 276 SKEDVFDSKIGDDYEKTNLWKINPSRNRKHPATFPYGLAERVIKYYSFKNDVILDPFAGS 335

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           GT+   A  L R F+  E+ + YID+  +
Sbjct: 336 GTTAKAAIDLGRRFVMCEISKQYIDLIIE 364


>gi|126178468|ref|YP_001046433.1| DNA methylase N-4/N-6 domain-containing protein [Methanoculleus
           marisnigri JR1]
 gi|125861262|gb|ABN56451.1| DNA methylase N-4/N-6 domain protein [Methanoculleus marisnigri
           JR1]
          Length = 326

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 58/267 (21%), Positives = 119/267 (44%), Gaps = 6/267 (2%)

Query: 21  DKIIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +    G+ I+     +P  SVDLI  DPPY +  + +L++  +     V D + +  + +
Sbjct: 9   NIFYNGDCIAGARAHIPDDSVDLIVTDPPYGINGD-RLHQHYNRDEAFVVDGYVEVPASD 67

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y  F++ W+    R+L+P G+++++  Y N++ I   L+  +   +N I+WR S  +  
Sbjct: 68  -YGEFSQRWIQEAERILRPGGSIYIVSGYTNLYHILHALRGTHLREVNHIIWRYSFGV-- 124

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           +  R++ ++H  +++       + +                  ++             K 
Sbjct: 125 YTSRKYVSSHYHVLFYEKPGGDRTFNLESRYGTGERGPKNGSLNYRDREDVWCINREYKP 184

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G+  +  + P  LL +++  S+  GD++ D F G  T+  VA  L R   G E+ +   D
Sbjct: 185 GQAKNKNELPTELLVKMIQYSSNEGDLVCDMFLGGFTTAKVAVGLNRRATGFEISERVFD 244

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEP 286
           +    +   +P G +  T+ T +  EP
Sbjct: 245 LKIAELRDTRP-GWLLSTLRTPETGEP 270


>gi|257085292|ref|ZP_05579653.1| DNA methylase [Enterococcus faecalis Fly1]
 gi|256993322|gb|EEU80624.1| DNA methylase [Enterococcus faecalis Fly1]
 gi|315579551|gb|EFU91742.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0630]
          Length = 422

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 104/249 (41%), Gaps = 15/249 (6%)

Query: 23  IIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           ++ G++     V + L  K  +L+  DPPYN+ +       + S  + +    +   S E
Sbjct: 175 LLCGDATKLSDVEKLLQGKKANLVVTDPPYNVAVKSDNKELNESGREKI---MNDDMSDE 231

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            +D F  +        ++ +  ++V             +     ++ +  +W K+N    
Sbjct: 232 EFDQFLMSVFQNYSNAMRDDSAIYVFHGSSYQREFENSMNAAGIFVRSQCIWVKNNATFG 291

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           +   R+Q  HE + +A    +A  +  +        +      D L  + +   ++   D
Sbjct: 292 WSQYRWQ--HEPVFYAHKKKQAPAWYGDRKQTTVWQD------DLLEDLPATIWKVPRDD 343

Query: 200 GEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQKP +L++  + +S+K  DI+LD F GSG++    ++L R    +E+   + 
Sbjct: 344 VATYYHPTQKPLSLIAIPVRNSSKRQDIVLDLFGGSGSTLMTCEQLNRICYTLELDPLFC 403

Query: 259 DIATKRIAS 267
           D+  +R   
Sbjct: 404 DVIIERFEK 412


>gi|254559486|ref|YP_003066581.1| phage methyltransferase [Methylobacterium extorquens DM4]
 gi|254266764|emb|CAX22563.1| putative phage methyltransferase [Methylobacterium extorquens DM4]
          Length = 494

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 60/253 (23%), Positives = 113/253 (44%), Gaps = 17/253 (6%)

Query: 21  DKIIKG-----NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
            +++       ++ ++L  L  +SV ++F+DPPYN+ ++G +             +  + 
Sbjct: 200 HRLLCASALEADNYAML--LQGESVRMVFSDPPYNVPVSGHVCGSGKVQHREFAMASGEM 257

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
           S  E + AF    +   R  L P G +++   + ++F + T  + +    LN  VW K+N
Sbjct: 258 SEAE-FVAFLVQAMAHLRERLVPGGLMYLAMDHRHVFELSTAARQIGLEQLNICVWNKTN 316

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
                 G  +++ HE +        A   T     ++         + W     +   R 
Sbjct: 317 AG---MGSFYRSKHELIFVLRKPGAAHLNT-----VELGRHGRYRTNVWDYAGVNTFGRH 368

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           R ++    HPT KP AL+   +   T+ G+ +LD F GSGT+   A++  R   GIE+  
Sbjct: 369 RIRELSS-HPTVKPVALVIDAIKDCTRRGERVLDAFCGSGTTLIAAERAGRVGYGIELDP 427

Query: 256 DYIDIATKRIASV 268
            Y+D+A +R  ++
Sbjct: 428 VYVDVAVRRWQAL 440


>gi|322384140|ref|ZP_08057851.1| adenine-specific DNA methylase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321151132|gb|EFX44448.1| adenine-specific DNA methylase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 240

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 66/248 (26%), Positives = 100/248 (40%), Gaps = 24/248 (9%)

Query: 22  KIIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +I   + I+  +  L   S DLI ADPPYNL+  G            V  + D   SF+ 
Sbjct: 4   EIYNKDCINGAKTHLLTNSADLIIADPPYNLKFGGTTMTKTKRPRHRVIANDD--LSFKD 61

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  FT  WL    RVLK    ++V   +     I   ++ + F I N IVW K +     
Sbjct: 62  YQRFTLEWLRQAHRVLKDGHHIYVFIDWRMHPYIALWMRKIGFEIKNLIVWDKQS---MG 118

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G +++  HE +I+A                  + +   +     IP             
Sbjct: 119 LGWQYRFQHELVIFAIKGKTKARRI-------RSRKTADILRVKRIPGQYT--------- 162

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
             +HPT+KP  L+  I+ +ST+ G+ ++D F GSG        L R     E+ Q Y  +
Sbjct: 163 --VHPTEKPTELMKIIVENSTEEGETVVDFFSGSGPVTEACLNLNRRVKAFEIDQKYYQM 220

Query: 261 ATKRIASV 268
             KR   +
Sbjct: 221 TVKRAEKI 228


>gi|224025034|ref|ZP_03643400.1| hypothetical protein BACCOPRO_01768 [Bacteroides coprophilus DSM
           18228]
 gi|224018270|gb|EEF76268.1| hypothetical protein BACCOPRO_01768 [Bacteroides coprophilus DSM
           18228]
          Length = 263

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 67/266 (25%), Positives = 98/266 (36%), Gaps = 38/266 (14%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           KD+I   + +  ++++  +SVD I AD PY +  N                 WDK    E
Sbjct: 4   KDQIYHMDCLKGMKQMADRSVDAIIADLPYGVLNNRNTSA-----------GWDKQLPLE 52

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                 + W     R+ KP   + + G    +F    +L     W  N +  +       
Sbjct: 53  ------KLW-EEYLRISKPESPVILFG--QGMFTARLVLSQPKIWRYNLVWHKDRVTGHL 103

Query: 140 FRGRRFQNAHETLI-----------WASPSP-------KAKGYTFNYDALKAANEDVQMR 181
              R     HE +I              P P       ++K   F        N      
Sbjct: 104 NANRMPLRQHEDIIVFYRKQPVYHPQMKPCPAEQRNHGRSKTRGFTNRCYGQMNLTPIRI 163

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
           +D   P    +    +  G   HPTQKP ALL  ++ + T  GD +LD   GSGT+   A
Sbjct: 164 ADDKYPTSVIAIAKEHCKGCFYHPTQKPVALLEYLIRTYTNEGDTVLDSCIGSGTTMVAA 223

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIAS 267
            +  R FIG E +Q Y + A  RIA 
Sbjct: 224 IRTGRHFIGFETEQSYFETALLRIAE 249


>gi|307291440|ref|ZP_07571324.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0411]
 gi|306497671|gb|EFM67204.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0411]
 gi|315033855|gb|EFT45787.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0017]
          Length = 422

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 104/249 (41%), Gaps = 15/249 (6%)

Query: 23  IIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           ++ G++     V + L  K  +L+  DPPYN+ +       + S  + +    +   S E
Sbjct: 175 LLCGDATKLSDVEKLLQGKKANLVVTDPPYNVAVKSDNKELNESGREKI---MNDDMSDE 231

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            +D F  +        ++ +  ++V             +     ++ +  +W K+N    
Sbjct: 232 EFDQFLMSVFQNYSNAMRDDSAIYVFHGSSYQREFENSMNAAGIFVRSQCIWVKNNATFG 291

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           +   R+Q  HE + +A    +A  +  +        +      D L  + +   ++   D
Sbjct: 292 WSQYRWQ--HEPVFYAHKKKQAPAWYGDRKQTTVWQD------DLLEDLPATIWKVPRDD 343

Query: 200 GEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQKP +L++  + +S+K  DI+LD F GSG++    ++L R    +E+   + 
Sbjct: 344 VATYYHPTQKPLSLIAIPVRNSSKRQDIVLDLFGGSGSTLMTCEQLNRICYTLELDPLFC 403

Query: 259 DIATKRIAS 267
           D+  +R   
Sbjct: 404 DVIIERFEK 412


>gi|254183949|ref|ZP_04890540.1| DNA methylase [Burkholderia pseudomallei 1655]
 gi|184214481|gb|EDU11524.1| DNA methylase [Burkholderia pseudomallei 1655]
          Length = 267

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 61/260 (23%), Positives = 104/260 (40%), Gaps = 32/260 (12%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDA----- 67
           +    D++   +++++   LP  S+D++F DPPY    L  + +   P    +++     
Sbjct: 25  LSPLLDRLHAMDALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSTKYINSDTKTV 84

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
            TD         A+  +  AWL  CRR LKP G L     +  +  +  ++Q     +  
Sbjct: 85  YTDFESDNMDQRAWAFWCHAWLSECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILRG 144

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
             VW K+      R   F    E ++W               A + A  D ++    + P
Sbjct: 145 IAVWDKTPGRTRPRRGGFAQQAEFVVW---------------ASRGAMRDCEVYLPGVFP 189

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                         K H T+KP   ++R +V     G ++ D F GSGT  A A++    
Sbjct: 190 --------CRLPLPKQHVTEKPLD-IAREVVRLVPAGGVVCDLFAGSGTFLAAAREAGLH 240

Query: 248 FIGIEMKQDYIDIATKRIAS 267
           +IG E    Y++IA  R+  
Sbjct: 241 WIGCESNVYYVNIAHSRLRK 260


>gi|317010544|gb|ADU84291.1| type II DNA modification enzyme [Helicobacter pylori SouthAfrica7]
          Length = 252

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 95/254 (37%), Gaps = 27/254 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G++ SVLE       DL    PPYNL +  Q                + F +++ Y 
Sbjct: 12  LYHGDA-SVLETFEKGFYDLCVTSPPYNLSIEYQGS--------------NDFRAYDDYL 56

Query: 83  AFTRAWLLACRRVLKPNGTLW--------VIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            + + WL  C    K    L           G       I  + +   +   N I+W +S
Sbjct: 57  NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNES 116

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N         +  A       + +P      F  +  K   +   M  +  +   +G   
Sbjct: 117 NISRRTAWGSWLQASAP---YAIAPVELIIVFYKNEYKRKKQTSTMSREEFLLYTNGLWN 173

Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
              +  ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E+
Sbjct: 174 FSGESKKRLKHPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEI 233

Query: 254 KQDYIDIATKRIAS 267
           +++Y +++ KRI  
Sbjct: 234 EKEYCELSKKRILE 247


>gi|307944128|ref|ZP_07659469.1| DNA methylase [Roseibium sp. TrichSKD4]
 gi|307772474|gb|EFO31694.1| DNA methylase [Roseibium sp. TrichSKD4]
          Length = 269

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 100/254 (39%), Gaps = 30/254 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF--- 78
           ++ + ++++ L    +   D +  DPPY+        R   S      +   K+  F   
Sbjct: 34  QLFQQDALTWLHDQSSNQFDALVTDPPYSSGGLHSGSRTADSANRKYVNDEKKYPEFSGE 93

Query: 79  ----EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
                +Y  ++  WL    R+LKP     V   +  +  +   +Q   F     + W K+
Sbjct: 94  NRDQHSYMLWSTLWLTEAHRILKPGSPFLVFTDWRQLSVMINAVQAAGFTYRGCVPWDKT 153

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
                 +GR  Q A E ++W S           Y  +   +                   
Sbjct: 154 EACRPQKGRFRQQA-EFVLWGSKGAWHGKDGPTYPGVIRCSVM----------------- 195

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
              + G KLH T KP  L+  ++     P   +LDPF GSG++G  A +  R F+G E +
Sbjct: 196 ---QGGPKLHTTGKPVPLMDALVQ--VCPEGTVLDPFAGSGSTGVAALRSGRRFVGCERE 250

Query: 255 QDYIDIATKRIASV 268
           Q Y DIA++R+ +V
Sbjct: 251 QAYFDIASERLGTV 264


>gi|307352466|ref|YP_003893517.1| DNA methylase N-4/N-6 domain-containing protein [Methanoplanus
           petrolearius DSM 11571]
 gi|307155699|gb|ADN35079.1| DNA methylase N-4/N-6 domain protein [Methanoplanus petrolearius
           DSM 11571]
          Length = 279

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 59/295 (20%), Positives = 109/295 (36%), Gaps = 58/295 (19%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N N+NS +   + I   + +  ++K+P   +D+I   PPYN+ +    +  +        
Sbjct: 5   NINENSEYAELNVIYNVDCLKGMKKIPDNFIDIIVTSPPYNIGIKYNTHNDNQ------- 57

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-----------WVIGSYHNIFRIGTML 118
                    ++Y  +        +R+LK +G++           W+     N FR    L
Sbjct: 58  -------PLDSYLNWMNLISKEFKRILKDDGSIFLNIGGKPSDLWIPFDVLNEFRSDFKL 110

Query: 119 QNLNFWILNDIV--------------WRKSNPMPNFRGRRFQNAHETLIWASPS------ 158
           QN+  WI +  +                  +  P    R     HE +   + +      
Sbjct: 111 QNIIHWIKSIAIEKKDVGNYDCLRKDMAVGHYKPVNSKRFLSQCHEHIFHLTKNCDINLD 170

Query: 159 ----PKAKGYTFNYDALKAANEDVQMR-SDWLIPICSGSERLRNKDGEKLHPTQKPEALL 213
                       N    K+AN D + R + W IP  +           + HPT  P  L 
Sbjct: 171 KLSIGVKYQDKSNIGRWKSANSDKRERGNVWFIPYETIL-------SSRPHPTSFPVRLP 223

Query: 214 SRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
              + +       +++DPF G G++    KKL  +++G E+ ++Y   A +R+A 
Sbjct: 224 EMCIKLHGFDEKTVVMDPFMGIGSTALACKKLETNYVGFEIDKEYYKFALERLAK 278


>gi|222112381|ref|YP_002554645.1| DNA methylase n-4/n-6 domain-containing protein [Acidovorax ebreus
           TPSY]
 gi|221731825|gb|ACM34645.1| DNA methylase N-4/N-6 domain protein [Acidovorax ebreus TPSY]
          Length = 425

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 100/251 (39%), Gaps = 30/251 (11%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G++    S    +   + D++F DPPYN+               A+ +      
Sbjct: 170 QHRLLCGDATVAESYDRLMQGDAADMVFTDPPYNVNYANSAKDKMRGKDRAILNDNLG-- 227

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             + +  F RA L     V   +G ++V  S   +  +    +         I+W K+  
Sbjct: 228 --DGFYDFLRAALTP--TVAHCSGGIYVAMSSSELDVLQAAFRAAGGKWSTFIIWAKNTF 283

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
                    Q  +E +++  P    + +  + D     +     ++D             
Sbjct: 284 TLGRADY--QRQYEPILYGWPEGAQRHWCGDRDQGDVWSIKKPQKND------------- 328

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                 LHPT KP  L+ R + +S++PG+++LDPF GSGT+   A+K  R    IE+   
Sbjct: 329 ------LHPTMKPVELVERAIRNSSRPGNVVLDPFGGSGTTLIAAEKSGRIARLIELDPK 382

Query: 257 YIDIATKRIAS 267
           Y+D+  +R   
Sbjct: 383 YVDVIVRRWEE 393


>gi|225573267|ref|ZP_03782022.1| hypothetical protein RUMHYD_01458 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039399|gb|EEG49645.1| hypothetical protein RUMHYD_01458 [Blautia hydrogenotrophica DSM
           10507]
          Length = 417

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 53/279 (18%), Positives = 103/279 (36%), Gaps = 38/279 (13%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G++     V   +  K  +L+  DPPY +              D +T   D   
Sbjct: 170 RHRLLCGDATRTEDVERLMDGKKANLVVTDPPYGVSFKSS---------DGLTIQNDSMK 220

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E Y  F           L+  G+ +V  +            ++ F +    +W K++ 
Sbjct: 221 DEEFYT-FLLTAFQCMAEHLENGGSAYVFHADTEGLNFRKAFIDIGFHLAGVCIWVKNSL 279

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +        Q  HE +++         +  +       N D   R               
Sbjct: 280 VLGRSDY--QWQHEPVLFGWKKGGKHSWYSDRRQTTIWNYDKPKR--------------- 322

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                K HPT KP  LL   + +S++   I+LD F GSG++    ++L R    +E+ + 
Sbjct: 323 ----NKNHPTSKPLDLLGYPICNSSQENAIVLDTFGGSGSTLMACEQLNRICHMMELDEK 378

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
           Y  +  +R   V+  G+ E   +   R + ++ ++ LV+
Sbjct: 379 YASVILRRY--VEDTGDKENVYVI--RGDEQIPYSALVK 413


>gi|317012105|gb|ADU82713.1| putative adenine-specific DNA-methyltransferase [Helicobacter
           pylori Lithuania75]
          Length = 252

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 94/254 (37%), Gaps = 27/254 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G++ SVLE       DL    PPYNL +  Q                + F +++ Y 
Sbjct: 12  LYHGDA-SVLETFEKGFYDLCVTSPPYNLSIEYQGS--------------NDFRAYDDYL 56

Query: 83  AFTRAWLLACRRVLKPNGTLW--------VIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            + + WL  C    K    L           G       I  + +   +   N I+W +S
Sbjct: 57  NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNES 116

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N         +  A       + +P      F  +  K   +   M  +  +   +G   
Sbjct: 117 NISRRTAWGSWLQASAP---YAIAPVELIVVFYKNEYKRKKQTSTMSKEEFLLYTNGLWN 173

Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
              +  + L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E+
Sbjct: 174 FSGESKKHLKHPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEI 233

Query: 254 KQDYIDIATKRIAS 267
           +++Y +++ KRI  
Sbjct: 234 EKEYCELSKKRILE 247


>gi|326626279|gb|EGE32623.1| putative adenine-specific DNA methylase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 226

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 101/254 (39%), Gaps = 53/254 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I GN + ++   P ++VD I  DPPY +       R   S+    TD W + +  + Y
Sbjct: 3   RLILGNCVDIMSGFPERAVDFILTDPPYLVGFRD---RSGRSIAGDRTDEWLQPACNQMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  L     ++ + R     ++  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALLVSFYGWNRVDRFMAAWKSAGFSVVGHLVFTKNYSSKSAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ +                             
Sbjct: 108 VGYRHECAYVLAKGRPALPQNPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T    I+L PF GS ++   A +  R +IGIE+ +
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHTNAIVLAPFAGSASTCVAALQAGRRYIGIELME 195

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+ +VQ
Sbjct: 196 QYHKAEIERLTAVQ 209


>gi|296142048|gb|ADG95998.1| N6-adenine methyltransferase [Helicobacter pylori]
          Length = 214

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 99/227 (43%), Gaps = 23/227 (10%)

Query: 22  KIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDKFSSF 78
           +I   ++  +++    +   VD I  DPPYN+ +         +    +    WDK    
Sbjct: 3   QIYHADAFEIIKDFYQQNLKVDAIITDPPYNISVKNHFSTLKSAKRQGIDFGEWDK---- 58

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
              +     W+     ++ PNG + +  SY  I  I   L+   F + + I W KSNPMP
Sbjct: 59  ---NFRLLEWIARYAPLVNPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKSNPMP 115

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
               RR+    E  +WA        + FN    K  NE          P+ SG ER++  
Sbjct: 116 RNLNRRYVQDTEFALWAVKKKA--RWVFN----KPKNEKYLRPLILKSPVVSGLERVK-- 167

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
                HPTQK  AL+ +I+   T P DI+LDPF GSGT+G   K L 
Sbjct: 168 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKNLN 209


>gi|255020319|ref|ZP_05292387.1| DNA methylase [Acidithiobacillus caldus ATCC 51756]
 gi|254970239|gb|EET27733.1| DNA methylase [Acidithiobacillus caldus ATCC 51756]
          Length = 428

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 60/278 (21%), Positives = 104/278 (37%), Gaps = 39/278 (14%)

Query: 21  DKIIKGNSISV---LEKLPA-KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            +++ G++ +        P  +  D++F DPPYN+                + +     +
Sbjct: 171 HRLVCGDATTAEAYARLFPDGERADMVFTDPPYNVNYANSAKDKLRGKHRPILND----A 226

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E +  F    L     V    G ++V  S   +  +    +         I+W K+  
Sbjct: 227 LGEGFYDFLYDALSLL--VAHTRGAIYVAMSSSELDTLQAAFRTAGGHWSTFIIWAKNTF 284

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
                    Q  +E +++  P    + +            D      W I   + ++   
Sbjct: 285 TLGRSDY--QRQYEPILYGWPEGGERHWC----------GDRDQGDVWQIKKPAKND--- 329

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                 LHPT KP  L+ R + +S++PGD++LDPF GSGT+   A+K  R    IE+   
Sbjct: 330 ------LHPTMKPVELVERAIRNSSRPGDVVLDPFGGSGTTMIAAEKAGRVARLIELDPK 383

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLV 294
           Y D+  +R          + T     R    VAF+ LV
Sbjct: 384 YADVIVRRWQ--------DWTGQQATREADGVAFDDLV 413


>gi|312903193|ref|ZP_07762373.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0635]
 gi|310633069|gb|EFQ16352.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0635]
          Length = 422

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 104/249 (41%), Gaps = 15/249 (6%)

Query: 23  IIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           ++ G++     V + L  K  +L+  DPPYN+ +       + S  + +    +   S E
Sbjct: 175 LLCGDATKPSDVEKLLQGKKANLVVTDPPYNVAVKSDNKELNESGREKI---MNDDMSDE 231

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            +D F  A        ++ +  ++V             +      + +  +W K+N    
Sbjct: 232 EFDQFLMAVFQNYSNAMRDDSAIYVFHGSSYQREFENSMNAAGIVVRSQCIWVKNNATFG 291

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           +   R+Q  HE + +A    +A  +  +        +    + D L  + +   ++   D
Sbjct: 292 WSQYRWQ--HEPVFYAHKKKQAPSWYGDR------KQTTIWQDDLLEDLPATIWKVPRDD 343

Query: 200 GEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQKP +L++  + +S+K  DI+LD F GSG++    ++L R    +E+   + 
Sbjct: 344 VATYYHPTQKPLSLIAIPVRNSSKRQDIVLDLFGGSGSTLMTCEQLNRICYTLELDPLFC 403

Query: 259 DIATKRIAS 267
           D+  +R   
Sbjct: 404 DVIIERFEK 412


>gi|308184066|ref|YP_003928199.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter pylori
           SJM180]
 gi|308059986|gb|ADO01882.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter pylori
           SJM180]
          Length = 252

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 95/254 (37%), Gaps = 27/254 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+ +SVL+       DL    PPYNL +  Q                + F +++ Y 
Sbjct: 12  LYHGD-VSVLKTFEKGFYDLCVTSPPYNLSIEYQGS--------------NDFRAYDDYL 56

Query: 83  AFTRAWLLACRRVLKPNGTLW--------VIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            + + WL  C    K    L           G       I  + +   +   N I+W +S
Sbjct: 57  NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIVLAKECGWKYQNTIIWNES 116

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N         +  A       + +P      F  +  K   +   +  +  +   +G   
Sbjct: 117 NISRRTAWGSWLQASAP---YAIAPVELIVVFYKNEYKRQKQTSTISKEEFLLYTNGLWS 173

Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
              +  ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E+
Sbjct: 174 FSGESKKRLKHPAPFPRELPKRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEI 233

Query: 254 KQDYIDIATKRIAS 267
           +++Y +++ KRI  
Sbjct: 234 EKEYCELSKKRILE 247


>gi|190573863|ref|YP_001971708.1| putative DNA methyltransferase [Stenotrophomonas maltophilia K279a]
 gi|190011785|emb|CAQ45405.1| putative DNA methyltransferase [Stenotrophomonas maltophilia K279a]
          Length = 415

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 58/271 (21%), Positives = 101/271 (37%), Gaps = 34/271 (12%)

Query: 21  DKIIKGNSI-----SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
            +++ G++        L  L    VD++F DPPYN+               A+ +     
Sbjct: 171 HRLLCGDATVAESYDAL--LQGAPVDMVFTDPPYNVNYANSAKDKMRGKDRAILNDNLG- 227

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
              + +  F  A L     V    G ++V  S   +  + +  +         I+W K+ 
Sbjct: 228 ---DGFYDFLLAALTQM--VANCRGGIYVAMSSSELDVLQSAFRAAGGKWSTFIIWAKNT 282

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
                     Q  +E +++  P    + +            D      W I     ++  
Sbjct: 283 FTLGRADY--QRQYEPILYGWPEGAQRHWC----------GDRDQGDVWQIKKPQKND-- 328

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                  LHPT KP  L+ R + +S++PG+++LDPF GSGT+   A+K  R    IE+  
Sbjct: 329 -------LHPTMKPVELVERAIRNSSRPGNVVLDPFGGSGTTLIAAEKSGRVARLIELDP 381

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
            Y+D+  +R  +      I     T     P
Sbjct: 382 KYVDVIVRRWENFTGQQAIREADDTSFDVLP 412


>gi|164707731|gb|ABY67025.1| M.MjaVI [Methanocaldococcus jannaschii]
          Length = 263

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 63/254 (24%), Positives = 106/254 (41%), Gaps = 27/254 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            +I  + ++V   LP +S+DLI   PPYN+ ++   +              D    +E Y
Sbjct: 16  TLINDDFLNV--DLPNESIDLIVTSPPYNVGIDYNQH--------------DDTIPYEEY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVI--------GSYHNIFRIGTMLQNLNFWILNDIVWRK 133
             +T+ WL     +LK +G L +         G       I  +  ++ F     I+W +
Sbjct: 60  LDWTKQWLKKALTLLKKDGRLCLNIPLDKNKGGIKPVYADIVKIALDVGFKYQTTIIWNE 119

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
            N         F +A    + A        Y  ++  L     D+    +  I   +G  
Sbjct: 120 QNISRRTAWGSFMSASAPYVIAPVETIVVLYKESWKKLSKGESDITK--EEFIEWTNGLW 177

Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
               +  +++ HP   P  L  R +   +  GD +LDPF GSGT+   A KLRR  IG+E
Sbjct: 178 TFPGESKKRIGHPAPFPLELPKRCIKLFSYVGDTVLDPFLGSGTTAIAAYKLRRKAIGVE 237

Query: 253 MKQDYIDIATKRIA 266
           + + Y ++A KR++
Sbjct: 238 IDEKYFELAIKRVS 251


>gi|167757769|ref|ZP_02429896.1| hypothetical protein CLOSCI_00100 [Clostridium scindens ATCC 35704]
 gi|167664651|gb|EDS08781.1| hypothetical protein CLOSCI_00100 [Clostridium scindens ATCC 35704]
          Length = 293

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 69/305 (22%), Positives = 111/305 (36%), Gaps = 76/305 (24%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKF 75
            D II  +++  L +LP++SV+     PPY    +  L+ Q+ R D              
Sbjct: 3   TDVIINRDALYALRELPSESVNCCVTSPPYYGLRDYGLDAQIGRED-------------- 48

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI-----------------FRIGTML 118
            + E Y           RRVLK +GTLW+  +                     + +   L
Sbjct: 49  -TPEQYIGRLVEVFRELRRVLKDDGTLWLNIADTYCGTGMKAGCKQKDLIGIPWLLAFAL 107

Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA----- 173
           ++  +++ +DI+W K NPMP     R    +E +   +    +K Y ++  A+       
Sbjct: 108 RSDGWYLRSDIIWLKENPMPESCRDRPSRCYEHIFLLTK---SKKYYYDAAAIAEPIAPG 164

Query: 174 -----------------------------ANEDVQMRSDWLIPICSGSERLR---NKDGE 201
                                                 D L+P       +        +
Sbjct: 165 TAARYRQGRGAGHKYAEEVPGQGKVQGINKTRSGGYYDDALMPTTRNKRDVWLINTVPYK 224

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             H    P  L    +++    G ++LDPFFGSGT+G  AK L R +IGIE+   Y  +A
Sbjct: 225 GGHFAAYPPKLAETCILAGCPKGGVVLDPFFGSGTTGLAAKSLDRRYIGIELNAGYCALA 284

Query: 262 TKRIA 266
             RI 
Sbjct: 285 GARIG 289


>gi|326783121|ref|YP_004323518.1| DNA adenine methylase [Prochlorococcus phage P-HM2]
 gi|310005539|gb|ADO99927.1| DNA adenine methylase [Prochlorococcus phage P-HM2]
          Length = 266

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 60/264 (22%), Positives = 104/264 (39%), Gaps = 46/264 (17%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G+ + +++++P +SVD I  DPPY                   +  WD+         F 
Sbjct: 12  GDCLELMKEIPDESVDFICCDPPYGT----------------TSIKWDEI------LDFN 49

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
             W     R++KP G + + GS    F    +   L ++    I  +     P     R 
Sbjct: 50  LMW-EQYGRIIKPKGMMALFGS--QPFSAQLICSKLKWFKYELIWNKNKCGSPGLAKYRP 106

Query: 146 QNAHETLIWASPSP------------KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
              HE ++  + +P              K  + N +   +   D       +    +   
Sbjct: 107 MKTHENILLFAKNPGGTYNPIMEKGEPFKRQSKNPEGYVSKRNDHGYGLKPVKGFENKGT 166

Query: 194 RLRNK---------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           R               +++HPTQKP  +L  ++ + +  GD +LD   GSG++G  A KL
Sbjct: 167 RYPKSILNISRDFSAQQQVHPTQKPVPVLEWLITTFSNEGDTVLDNCMGSGSTGVAAVKL 226

Query: 245 RRSFIGIEMKQDYIDIATKRIASV 268
            R FIGI+  + Y+ I+ +RI S+
Sbjct: 227 NRKFIGIDTDEKYVTISRERIESI 250


>gi|294340231|emb|CAZ88603.1| Phage related DNA methyltransferase [Thiomonas sp. 3As]
          Length = 421

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 98/247 (39%), Gaps = 30/247 (12%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +++ G+S    S    L  + VD++F DPPYN+               A+ +       
Sbjct: 172 HRLLCGDSTVAESYDRVLDGEPVDMVFTDPPYNVNYANSARDKMRGKERAILNDNLGDGF 231

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           ++   A     +  CR      G ++V  S   +  + +  +         I+W K+   
Sbjct: 232 YDFLLAALTPTIAHCR------GGIYVAMSSSELDVLQSAFRAAGGKWSTFIIWAKNTFT 285

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                   Q  +E +++  P    + +  + D     N     ++D              
Sbjct: 286 LGRADY--QRQYEPILYGWPEGSQRHWCGDRDQGDVWNIKKPQKND-------------- 329

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
                LHPT KP  L+ R + +S++PG+++LDPF GSGT+   A+K  R    IE+   Y
Sbjct: 330 -----LHPTMKPVELVERAIRNSSRPGNVVLDPFGGSGTTLIAAEKSGRLARLIELDPKY 384

Query: 258 IDIATKR 264
            D+  +R
Sbjct: 385 ADVIVRR 391


>gi|127489|sp|P14230|MTSM_SERMA RecName: Full=Modification methylase SmaI; Short=M.SmaI; AltName:
           Full=N-4 cytosine-specific methyltransferase SmaI
 gi|47265|emb|CAA34479.1| unnamed protein product [Serratia marcescens]
 gi|152853|gb|AAA26570.1| methylase [Serratia marcescens]
          Length = 292

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 64/271 (23%), Positives = 111/271 (40%), Gaps = 35/271 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           KII G++   ++ L ++  D +   PPY    +    GQ+   D+ + D + D  D F  
Sbjct: 26  KIIVGDAREAVQGLDSEIFDCVVTSPPYWGLRDYGNGGQIGAEDN-INDYIKDLVDLFRD 84

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN-----------------------IFRI 114
                       L         G  W      N                        +R+
Sbjct: 85  VRRTLKDDGTLWLNIGDSYTSGGRTWRDKDDKNKGRAMSYRPPTPEGLKPKDLIGVPWRL 144

Query: 115 GTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
              LQN  +++  DI+W K N  P     R   +HE +   S     K Y ++++++K  
Sbjct: 145 AFALQNDGWYLRTDIIWNKPNCQPESVRDRPTRSHEYIFLLSKG---KKYYYDWESIKEP 201

Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
             D +M       + + +     +     H    P A+    +++ ++PG  +LDPFFGS
Sbjct: 202 ASDPKMDKKNRRTVWNIN----TEPYPGSHFAVFPRAMARLCVLAGSRPGGKVLDPFFGS 257

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           GT+G V ++L R  +GIE+ ++Y  +A +RI
Sbjct: 258 GTTGVVCQELDRECVGIELNEEYASLAKERI 288


>gi|167839692|ref|ZP_02466376.1| site-specific DNA methyltransferase [Burkholderia thailandensis
           MSMB43]
          Length = 230

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 61/249 (24%), Positives = 99/249 (39%), Gaps = 32/249 (12%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDA-----VTDSWDKFSS 77
            +++++   LP  S+D++F DPPY    L  + +   P    +++      TD       
Sbjct: 1   MDALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSAKCINSDTKTVYTDFESDNMD 60

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
             A+  +  AWL  CRR LKP G L     +  +  +  ++Q     +    VW K+   
Sbjct: 61  QRAWAFWCHAWLSECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILRGVAVWDKTPGR 120

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
              R   F    E ++WAS         +                   +P+         
Sbjct: 121 TRPRRGGFAQQAEFVVWASRGAMRDCDVYLPGVFPC-----------RLPVP-------- 161

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
               K H T+KP   ++R +V     G ++ D F GSGT  A A++    +IG E  Q Y
Sbjct: 162 ----KRHVTEKPLD-IAREVVRLVPAGGVVCDLFAGSGTFLAAAREAGLHWIGCETNQAY 216

Query: 258 IDIATKRIA 266
             IA +R+A
Sbjct: 217 HAIAEQRLA 225


>gi|22091198|ref|NP_666012.1| adenine methyltransferase [Natrialba phage PhiCh1]
 gi|289594309|ref|YP_003482316.1| DNA methylase N-4/N-6 domain protein [Natrialba magadii ATCC 43099]
 gi|6118090|gb|AAF04014.1|AF172444_1 adenine methyltransferase [Natrialba phage PhiCh1]
 gi|289533406|gb|ADD07754.1| DNA methylase N-4/N-6 domain protein [Natrialba magadii ATCC 43099]
          Length = 419

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 65/258 (25%), Positives = 113/258 (43%), Gaps = 31/258 (12%)

Query: 17  FEWKDKIIKGNSISVL-EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           ++   ++   + I  + ++L   SVDL+  DPPY + ++        S+  + T + D  
Sbjct: 166 YDVDHQVYFEDCIEGMSQRLEGDSVDLVLTDPPYGIDIDLSETLGSRSVQHSGTVANDDL 225

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
                  +  R      RRV+KP G ++V  S+        +L +  F + N IVW K+ 
Sbjct: 226 DGA---LSVFRDAAKEMRRVVKPGGHVYVFASWKTYDLFRDILVDEEFTVRNCIVWCKTV 282

Query: 136 PMPNFR----GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
           P         G  +   HE +I+A+              L +       R D ++     
Sbjct: 283 PNNQPNFGTGGTNWGLQHEFVIYAT--------------LDSPRPLKHTRPDIIV----- 323

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
               ++      HPTQKP  LL   +  S++PGD++LDPF GSG++   + +  R  IG 
Sbjct: 324 ---HKHSTSGNEHPTQKPVGLLEEFIEQSSQPGDVVLDPFAGSGSTAVASVQTDRECIGF 380

Query: 252 EMKQD-YIDIATKRIASV 268
           E++ D Y ++  +RI+  
Sbjct: 381 ELEGDVYQEVVDRRISEA 398


>gi|312623547|ref|YP_004025160.1| DNA methylase N-4/N-6 domain-containing protein
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312204014|gb|ADQ47341.1| DNA methylase N-4/N-6 domain protein [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 323

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 60/262 (22%), Positives = 105/262 (40%), Gaps = 29/262 (11%)

Query: 17  FEWKDKIIKGNSISVLEKLPA--KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           FE K KI + + ++V   L      ++LI   PPYN+ ++   +              D 
Sbjct: 70  FENKIKIFENDFLTV--DLSPWRGKINLIVTSPPYNVGIDYNSH--------------DD 113

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLW--------VIGSYHNIFRIGTMLQNLNFWIL 126
            SS+E Y  F+R WL     +L  +G +           G       I T+ + + F   
Sbjct: 114 SSSYEDYLEFSRKWLTKAYDLLADDGRMCLNIPLDKNKNGLRSVYADIVTIAKEVGFKYQ 173

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           + I+W + N         + +A    + A        Y   +   + +     +  +  I
Sbjct: 174 STIIWNEQNISRRTAWGSWLSASAPYVIAPVETIVLLYKHQWK--RKSKGTSTIEKEQFI 231

Query: 187 PICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
              +G      ++ +K+ HP   P  L  R +   +   D +LDPF GSG++   A +  
Sbjct: 232 EWTNGVWTFNGENRKKIGHPAPFPVELPRRCIKLFSFEEDTVLDPFLGSGSTLIAALEEG 291

Query: 246 RSFIGIEMKQDYIDIATKRIAS 267
           R  IG+E+   Y+++A KRI  
Sbjct: 292 RQGIGVEIDSSYVELAIKRIME 313


>gi|317180068|dbj|BAJ57854.1| adenine specific DNA methyltransferase [Helicobacter pylori F32]
          Length = 252

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 95/254 (37%), Gaps = 27/254 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G++ SVL+       DL    PPYNL +  Q                + F +++ Y 
Sbjct: 12  LYHGDA-SVLKTFEKGFYDLCITSPPYNLSIEYQGS--------------NDFRAYDDYL 56

Query: 83  AFTRAWLLACRRVLKPNGTLW--------VIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            + + WL  C    K    L           G       +  + +   +   N I+W +S
Sbjct: 57  NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADMIAIAKECGWKYQNTIIWNES 116

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N         +  A       + +P      F  +  K   +   +  +  +   +G   
Sbjct: 117 NISRRTAWGSWLQASAP---YAIAPVELIVVFYKNEYKRQKQTSTISKEEFLLYTNGLWS 173

Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
              +  ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E+
Sbjct: 174 FSGESKKRLKHPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEI 233

Query: 254 KQDYIDIATKRIAS 267
           +++Y +++ KRI  
Sbjct: 234 EKEYCELSKKRILE 247


>gi|332971258|gb|EGK10221.1| DNA (cytosine-5-)-methyltransferase [Desmospora sp. 8437]
          Length = 228

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 104/250 (41%), Gaps = 29/250 (11%)

Query: 29  ISVLEKLPAKSVDLIFADPPYNL---QLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           +  ++ LP++ +D +  DPPY     Q +G+  R   +   +         S + +  F 
Sbjct: 1   MEQMKNLPSEILDAVITDPPYCSGSRQESGKGQRNRMTTTKSSRWFGGDGLSTQGFLWFM 60

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
           R   L   R+LKP G + V   +  +  +   +++ +F   + +VW K+       G  F
Sbjct: 61  RQCALEWNRLLKPGGHVLVFIDWRMMPYLAAAIESADFRYNSLLVWDKTY---FTMGACF 117

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
           +N HE ++  S                   + V  R D       G+   +       HP
Sbjct: 118 RNQHELILHFSK-----------------GKGVPQRRD------VGNVLSQKPVRNGQHP 154

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T+KP  L+ R++        ++LD F GSGT+G    +  R ++ IE    Y +++ +R+
Sbjct: 155 TEKPVDLIQRLISVVCPEHGLVLDSFAGSGTTGVACLRSGRHYVLIERDPYYAEVSKERL 214

Query: 266 ASVQPLGNIE 275
            +   L  ++
Sbjct: 215 RAETELEKVD 224


>gi|331090171|ref|ZP_08339059.1| hypothetical protein HMPREF1025_02642 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330402117|gb|EGG81689.1| hypothetical protein HMPREF1025_02642 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 412

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 92/251 (36%), Gaps = 35/251 (13%)

Query: 20  KDKIIKGNSI--SVLEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G+S        L      +L+  DPPYN+   G   +  +              
Sbjct: 167 RHRLVCGDSTKAETYTTLMDGVKANLVITDPPYNVNYEGSAGKIKN-----------DNM 215

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           + E +  F  A       V+  + +++V  +            +  F++    +W+K + 
Sbjct: 216 AGEKFYEFLLAAFKNMESVMAADASIYVFHADTEGLNFRRAFADAGFYLSGCCIWKKQSL 275

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +       +Q  HE +++        G+  N               ++  P  +G     
Sbjct: 276 V--LGRSPYQWQHEPVLY--------GWKKNGKHQWYTGRKETTIWEFDKPKKNGE---- 321

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                  HPT KP  LL+  + +S+    ++LDPF GSG++    ++  R    IE+ + 
Sbjct: 322 -------HPTMKPIPLLAYPIGNSSMANSVVLDPFGGSGSTLIACEQTDRICRTIELDEK 374

Query: 257 YIDIATKRIAS 267
           + D+   R   
Sbjct: 375 FCDVIVNRYIE 385


>gi|319778768|ref|YP_004129681.1| Modification methylase BamHII [Taylorella equigenitalis MCE9]
 gi|317108792|gb|ADU91538.1| Modification methylase BamHII [Taylorella equigenitalis MCE9]
          Length = 252

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 73/254 (28%), Positives = 112/254 (44%), Gaps = 22/254 (8%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR-PDHSLVDAVTDSWDKFSS-- 77
           +KI   + +  L ++  KSV+L+   PPYN+ L  +        +V+  +  +  FS   
Sbjct: 5   NKIYNESCLDTLSRMEDKSVNLVITSPPYNMNLRIRNGNYCSRQIVEEFSTKYSGFSDNM 64

Query: 78  -FEAYDAFTRAWLLACRRV--LKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
             E Y  F  + L    RV  L       V GS   IFRI   +  LN  + + IVW K 
Sbjct: 65  PIEEYFQFHLSVLKELLRVSDLVFYNVQIVTGSKRAIFRI---MGELNEQLKDIIVWDKG 121

Query: 135 NPMPNFRGRRFQNAHETLI-WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
              P    R      E ++ + S +  ++ +          N+  Q+R            
Sbjct: 122 VAQPAMAERVLNRQSELILVFESENAISRQFKNANFERGTLNDIWQIR------------ 169

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           R       K H    PE L+  IL++ +K  DI+ DPF G+GT+G V KK+ R FIG E+
Sbjct: 170 RGAKDKFTKGHSAVFPEELVETILINFSKENDIVYDPFMGTGTTGLVCKKMNRKFIGSEL 229

Query: 254 KQDYIDIATKRIAS 267
            + Y + AT+RI +
Sbjct: 230 MKSYAEQATERINN 243


>gi|325107355|ref|YP_004268423.1| DNA methylase N-4/N-6 domain protein [Planctomyces brasiliensis DSM
           5305]
 gi|324967623|gb|ADY58401.1| DNA methylase N-4/N-6 domain protein [Planctomyces brasiliensis DSM
           5305]
          Length = 625

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 68/328 (20%), Positives = 123/328 (37%), Gaps = 78/328 (23%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
             ++   ++ I+ G+ ++ ++ LP+ SVDLIFADPP+N+     +Y+             
Sbjct: 2   SEAVASSRNTILPGDCVAGMQSLPSGSVDLIFADPPFNIGYEYDVYK------------- 48

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTL--------------------WVIGSYHNIF 112
               + + Y A+++ W+ A    LKP+GT                     + + S+   +
Sbjct: 49  -DVLAGDQYVAWSKDWMQAAYDCLKPDGTFWLAIGDEYAAELKVTAREIGFHMRSWVIWY 107

Query: 113 R-IGTMLQNLNFWILNDIVWRKSNP-------------------------MPNFRGRRFQ 146
              G   +         + +   N                            N  GR   
Sbjct: 108 YTFGVNCRRKFSRSHAHLFYFVKNADEFTFLDDEPANRIPSARQLVYNDKRANPAGRLPD 167

Query: 147 NAH--------------ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           +                ++++           T+        +        W  P  +G+
Sbjct: 168 DTWIISPDTAEGELQLPDSIVQELREGMPGEQTWTLRPQDLESCFQAEEDTWYFPRVAGT 227

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
                K+    H  Q PE LL RI+ S ++PG+++LDPF GS T+ AVAKKL R+++G E
Sbjct: 228 F----KERAGFHGCQMPEQLLGRIVRSCSRPGELVLDPFSGSATTLAVAKKLNRNYLGFE 283

Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLT 280
           + +DY+     R+  V+    +E     
Sbjct: 284 LSEDYVAHGLARLDGVRVGDRLEGAAEP 311


>gi|218890070|ref|YP_002438934.1| DNA methylase N-4/N-6 [Pseudomonas aeruginosa LESB58]
 gi|218770293|emb|CAW26058.1| DNA methylase N-4/N-6 [Pseudomonas aeruginosa LESB58]
          Length = 331

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 62/338 (18%), Positives = 111/338 (32%), Gaps = 88/338 (26%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            +I  G+ +  L  +P +S       PPY    +             +        +   
Sbjct: 5   HEIRVGDCLDALRAMPDQSFHCCITSPPYFGLRDY-----------GMASQIGLEQTPAE 53

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHN------------------------------ 110
           + A         RRVL+ +GTLWV                                    
Sbjct: 54  FVARLVEVFREVRRVLRDDGTLWVNMGDSYASIAGGYAPEGSAGKHDIVSRNTRGAVRRG 113

Query: 111 -----------------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
                             +R+   LQ+  +++  DI+W K NPMP     R   AHE + 
Sbjct: 114 HRRKPAEGLKQKDLMGIPWRLAFALQDDGWYLRQDIIWHKPNPMPESVRDRCTKAHEYVF 173

Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWLI------------------PICSGSERL 195
             +    ++ Y ++++A+K          +                        +G    
Sbjct: 174 MLTK---SRRYYYDHEAVKEDAVSEHPSGNGFKRDARESYKNLDGTARGNDEQWTGVGGK 230

Query: 196 RNKDG---------EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           RN+           +  H    P  L+   +++    G ++LDPF G+GT+  VA +  R
Sbjct: 231 RNRRSVWTVPTAGFKGAHFATFPPDLIRPCVLAGAPRGGLVLDPFGGAGTTALVAMQEGR 290

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
             + IE+  +Y  IA  R+ +    G  +L +L  ++ 
Sbjct: 291 RSVLIELNPEYAAIARNRLDTAWLEGAAQLDLLHDQKE 328


>gi|227553252|ref|ZP_03983301.1| DNA methylase N-4/N-6 [Enterococcus faecalis HH22]
 gi|227177618|gb|EEI58590.1| DNA methylase N-4/N-6 [Enterococcus faecalis HH22]
          Length = 422

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 104/249 (41%), Gaps = 15/249 (6%)

Query: 23  IIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           ++ G++     V + L  K  +L+  DPPYN+ +       + S  + +    +   S E
Sbjct: 175 LLCGDATKPSDVEKLLQGKKANLVVTDPPYNVAVKSDNKELNESGREKI---MNDDMSDE 231

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            +D F  +        ++ +  ++V             +      + +  +W K+N    
Sbjct: 232 EFDQFLMSVFQNYSNAMRDDSAIYVFHGSSYQREFENSMNAAGIVVRSQCIWVKNNATFG 291

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           +   R+Q  HE + +A    +A  +  +        +    + D L  + +   ++   D
Sbjct: 292 WSQYRWQ--HEPVFYAHKKKQAPSWYGDR------KQTTIWQDDLLEDLPATIWKVPRDD 343

Query: 200 GEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQKP +L++  + +S+K  DI+LD F GSG++    ++L R    +E+   + 
Sbjct: 344 VATYYHPTQKPLSLIAIPVRNSSKRQDIVLDLFGGSGSTLMTCEQLNRICYTLELDPLFC 403

Query: 259 DIATKRIAS 267
           D+  +R   
Sbjct: 404 DVIIERFEK 412


>gi|315575495|gb|EFU87686.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0309B]
 gi|315580064|gb|EFU92255.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0309A]
          Length = 422

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 104/249 (41%), Gaps = 15/249 (6%)

Query: 23  IIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           ++ G++     V + L  K  +L+  DPPYN+ +       + S  + +    +   S E
Sbjct: 175 LLCGDATKLSDVEKLLQGKKANLVVTDPPYNVAVKSDNKELNESGREKI---MNDDMSDE 231

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            +D F  +        ++ +  ++V             +      + +  +W K+N    
Sbjct: 232 EFDQFLMSVFQNYSNAMRDDSAIYVFHGSSYQREFENSMNAAGIVVRSQCIWVKNNATFG 291

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           +   R+Q  HE + +A    +A  +  +        +    + D L  + +   ++   D
Sbjct: 292 WSQYRWQ--HEPVFYAHKKKQAPSWYGDR------KQTTIWQDDLLEDLPATIWKVPRDD 343

Query: 200 GEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQKP +L++  + +S+K  DI+LD F GSG++    ++L R    +E+   + 
Sbjct: 344 VATYYHPTQKPLSLIAIPVRNSSKRQDIVLDLFGGSGSTLMTCEQLNRICYTLELDPLFC 403

Query: 259 DIATKRIAS 267
           D+  +R   
Sbjct: 404 DVIIERFEK 412


>gi|258593779|emb|CBE70120.1| Methyltransferase [NC10 bacterium 'Dutch sediment']
          Length = 298

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 64/282 (22%), Positives = 101/282 (35%), Gaps = 59/282 (20%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
             ++I G+S   L  LP  SV LI   PPY NL+                 ++ D+    
Sbjct: 1   MHRLINGDSRD-LSFLPDASVHLIVTSPPYWNLKR--------------YNENPDQLGHI 45

Query: 79  EAYDAFT---RAWLLACRRVLKPNGTLWVIGSYHNIFR--------------IGTMLQNL 121
           + Y+AF            R+L P G L  +     + R              I  + + +
Sbjct: 46  QEYEAFLFELEKVWRHVYRILVPGGRLVCVVGDVCVARRDFGRHLVFPLHADICVVCRRI 105

Query: 122 NFWILNDIVWRK--------SNPMPNFRGRR-----FQNAHETLIWASPSPKAKGYTFNY 168
            F  LN I+W K         N               +N  E ++        +  T   
Sbjct: 106 GFDNLNPIIWHKIANASYEVENGSKFLGKPYEPNAIIKNDMEFILMQRKPGGYRKPTNQQ 165

Query: 169 DALKAANED---VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
                  +D      +  W IP  S           K HP   P  L +R++   +  GD
Sbjct: 166 RDASRIRKDDFGQWFQQIWTIPGAST----------KQHPAPFPLELATRLIRMFSFTGD 215

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            +LDPF GSGT+   A +  R+ IG+E+  +Y  +A + + +
Sbjct: 216 TVLDPFCGSGTTMIAALRTGRNSIGVEIDPEYCRMAARYLKA 257


>gi|326783389|ref|YP_004323665.1| DNA adenine methylase [Prochlorococcus phage Syn33]
 gi|310005336|gb|ADO99725.1| DNA adenine methylase [Prochlorococcus phage Syn33]
          Length = 258

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 64/269 (23%), Positives = 106/269 (39%), Gaps = 48/269 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++ +G+ +S++  +  KS+DLI  DPPY                      WD+   F+  
Sbjct: 8   ELHQGDCLSLMNDIQDKSIDLICCDPPYGT----------------TNIKWDEVLDFDTM 51

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN-PMPNF 140
            A          R+LKP G + + GS    F    +   L  W   ++VW K+    P  
Sbjct: 52  WA-------QYDRILKPKGVIVLFGS--QPFSAQLICSKL-DWFRYELVWNKNKCGSPGL 101

Query: 141 RGRRFQNAHETLIWASP-----SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
             +R    HE ++                   Y     ++E    + +         +  
Sbjct: 102 AKKRPMKTHENILIFYKEAGGTYNPQMEVGEPYARKSKSDEGYVGKKNDHGYGMKPRKEF 161

Query: 196 RNKDGE----------------KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
            NK                   ++HPTQKP  +L  ++ + +  GD +LD   GSG++G 
Sbjct: 162 ENKGTRYPKSILNISRDFSAQQQVHPTQKPVPMLEWLIKTYSNEGDTVLDNCMGSGSTGV 221

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            A  L R FIG+E  ++Y +I+ +RI SV
Sbjct: 222 AAINLNRKFIGMETNEEYFNISAERIGSV 250


>gi|225375688|ref|ZP_03752909.1| hypothetical protein ROSEINA2194_01313 [Roseburia inulinivorans DSM
           16841]
 gi|257437540|ref|ZP_05613295.1| DNA (cytosine-5-)-methyltransferase [Faecalibacterium prausnitzii
           A2-165]
 gi|225212458|gb|EEG94812.1| hypothetical protein ROSEINA2194_01313 [Roseburia inulinivorans DSM
           16841]
 gi|257199847|gb|EEU98131.1| DNA (cytosine-5-)-methyltransferase [Faecalibacterium prausnitzii
           A2-165]
 gi|295109653|emb|CBL23606.1| DNA modification methylase [Ruminococcus obeum A2-162]
          Length = 293

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 66/305 (21%), Positives = 111/305 (36%), Gaps = 76/305 (24%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKF 75
            D II  +++  L +LP++SV+     PPY    +  L+ Q+ R D              
Sbjct: 3   TDVIINRDALYALRELPSESVNCCVTSPPYYGLRDYGLDAQIGRED-------------- 48

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI-----------------FRIGTML 118
            + E Y           RRVLK +GT W+  +                     + +   L
Sbjct: 49  -TPEQYIGRLVEVFRELRRVLKDDGTFWLNIADTYCGSGMKAGCKQKDLIGIPWLLAFAL 107

Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN--- 175
           ++  +++ +DI+W K NPMP     R    +E +   +    +K Y ++  A+       
Sbjct: 108 RSDGWYLRSDIIWLKENPMPESCRDRPSRCYEHIFLLTK---SKKYYYDAAAIAEPIAPG 164

Query: 176 -------------------------------EDVQMRSDWLIPICSGSERLR---NKDGE 201
                                                 D L+P       +        +
Sbjct: 165 TAARYRQGRSAGHKYAEEVPGQGKVQGINQPRSGSYYDDALMPTTRNKRDVWLINTVPYK 224

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             H    P  L    +++    G +++DPFFGSGT+G  A+ L R +IGIE+  +Y  +A
Sbjct: 225 GGHFAAYPPKLAETCILAGCPKGGVVIDPFFGSGTTGLAAQSLDRRYIGIELNAEYCALA 284

Query: 262 TKRIA 266
             RI 
Sbjct: 285 GARIG 289


>gi|302873673|ref|YP_003842306.1| DNA methylase N-4/N-6 domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307686603|ref|ZP_07629049.1| DNA methylase N-4/N-6 domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302576530|gb|ADL50542.1| DNA methylase N-4/N-6 domain protein [Clostridium cellulovorans
           743B]
          Length = 417

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 54/281 (19%), Positives = 101/281 (35%), Gaps = 36/281 (12%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K ++I G+S     V + +  K  +L   DPPYN+  +           D + DS     
Sbjct: 168 KHRLICGDSTKLSDVEKLMNGKKANLCVTDPPYNVNYSAGKENERVIKNDHMGDS----- 222

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
               +  F  A       VL      ++  +           ++  F + N  +W K + 
Sbjct: 223 ---KFYDFLLAAYKNAIVVLDDGAGAYIFHADTEGLNFRKAFKDAGFHLANVCIWVKQSL 279

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +        Q  HE +++         +  +       N D   +               
Sbjct: 280 VLGRSDY--QWQHEPVLYGWKPTGKHRWYSDRKQTTVWNFDRPTK--------------- 322

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                  HPT KP  L++  + +S+    II +PF GSG++    ++  RS   +E+ + 
Sbjct: 323 ----SPDHPTMKPVPLMAYPIQNSSMTNCIIYEPFAGSGSTLIACEQTGRSCYAVELDEK 378

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERG 297
           Y D+  +R   ++  GN     L   R   ++ ++ + E G
Sbjct: 379 YCDVIVRRY--IETAGNDSEVFLL--RDGEKIKYSDVKEEG 415


>gi|315586257|gb|ADU40638.1| adenine specific DNA methyltransferase [Helicobacter pylori 35A]
          Length = 422

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 95/254 (37%), Gaps = 27/254 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G++ SVLE       DL    PPYNL +  Q                + F +++ Y 
Sbjct: 182 LYHGDA-SVLETFEKGFYDLCITSPPYNLSIEYQGS--------------NDFIAYDDYL 226

Query: 83  AFTRAWLLACRRVLKPNGTLW--------VIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            + + WL  C    K    L           G       +  + +   +   N I+W +S
Sbjct: 227 NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADMIAIAKECGWKYQNTIIWNES 286

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N         +  A       + +P      F  +  K   +   +  +  +   +G   
Sbjct: 287 NISRRTAWGSWLQASAP---YAIAPVELIVVFYKNEYKRQKQTSTISKEEFLLYTNGLWS 343

Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
              +  ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E+
Sbjct: 344 FSGESKKRLKHPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEI 403

Query: 254 KQDYIDIATKRIAS 267
           +++Y +++ KRI  
Sbjct: 404 EKEYCELSKKRILE 417


>gi|294783251|ref|ZP_06748575.1| DNA (cytosine-5-)-methyltransferase [Fusobacterium sp. 1_1_41FAA]
 gi|294480129|gb|EFG27906.1| DNA (cytosine-5-)-methyltransferase [Fusobacterium sp. 1_1_41FAA]
          Length = 438

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 57/279 (20%), Positives = 118/279 (42%), Gaps = 29/279 (10%)

Query: 20  KDKIIKGNS--ISVLEKL-PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K +++ G+S  +  ++KL   +++DL+  DPPYN+    +         +      D  S
Sbjct: 161 KHRLMCGDSTNLEDVKKLVNNETMDLMVTDPPYNVNYEAK---------NGNKIKNDNMS 211

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           S E + +F   +      V++     ++  +          L+   F I   ++W K+  
Sbjct: 212 S-ENFYSFLLEFYKNSFEVMRTGAAYYIFHADSETKAFRGALEEAGFKISQCLIWVKNQF 270

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW-----------L 185
           + + +   ++  HE  ++      A  +  ++       +D++   ++           L
Sbjct: 271 VLSRQDYNWR--HEPCLYGWKEGAAHYFIKDFTQDTVIEKDLKSIENYSKKELINILKQL 328

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +       R        +HPT KP  L++R++ +S+K    ILD F GSG++   A++L 
Sbjct: 329 LKEQESIIRENKPQRNDVHPTMKPIKLIARLIHNSSKKEWNILDLFGGSGSTLIAAEQLN 388

Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
           R    +E    Y D+  KR    + LG +++T+L   + 
Sbjct: 389 RKSFLMEYDPKYADVIVKRY---RTLGKLDITLLREGKE 424


>gi|29376019|ref|NP_815173.1| adenine methyltransferase, putative [Enterococcus faecalis V583]
 gi|29343481|gb|AAO81243.1| adenine methyltransferase, putative [Enterococcus faecalis V583]
          Length = 422

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 104/249 (41%), Gaps = 15/249 (6%)

Query: 23  IIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           ++ G++     V + L  K  +L+  DPPYN+ +       + S  + +    +   S E
Sbjct: 175 LLCGDATKLSDVEKLLQGKKANLVVTDPPYNVAVKSDNKELNESGREKI---MNDDMSDE 231

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            +D F  +        ++ +  ++V             +      + +  +W K+N    
Sbjct: 232 EFDQFLMSVFQNYSNAMRDDSAIYVFHGSSYQREFENSMNAAGIVVRSQCIWVKNNATFG 291

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           +   R+Q  HE + +A    +A  +  +        +    + D L  + +   ++   D
Sbjct: 292 WSQYRWQ--HEPVFYAHKKKQAPSWYGDR------KQTTIWQDDLLEDLPATIWKVPRDD 343

Query: 200 GEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPTQKP +L++  + +S+K  DI+LD F GSG++    ++L R    +E+   + 
Sbjct: 344 VATYYHPTQKPLSLIAIPVRNSSKRQDIVLDLFGGSGSTLMTCEQLNRICYTLELDPLFC 403

Query: 259 DIATKRIAS 267
           D+  +R   
Sbjct: 404 DVIIERFEK 412


>gi|257457835|ref|ZP_05622994.1| DNA methylase [Treponema vincentii ATCC 35580]
 gi|257444548|gb|EEV19632.1| DNA methylase [Treponema vincentii ATCC 35580]
          Length = 283

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 64/268 (23%), Positives = 106/268 (39%), Gaps = 45/268 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +   + I+ L+ LP   +DL+   PPYN+                    ++K    E Y 
Sbjct: 23  LYNIDCIAALKILPRNYIDLVLTSPPYNIGK-----------------EYEKVLPIEDYI 65

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSY-------HNIFRIGTMLQNLNFWILNDIVWRKSN 135
            ++ +WL     +LK NG  W    Y         +  +  +   +  +++ +IVW    
Sbjct: 66  DWSSSWLNEIPLILKENGAFWYNLGYVPFKDSARALPLVYLLWDKVKMYLMQEIVWNYGA 125

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR-------------- 181
            +   +    +N      W         YTFN DA++  +                    
Sbjct: 126 GVACKKTLSPRNEK----WLWYVNNKDDYTFNLDAIRDPDVKYPNSKKNGKLRCNTLGKN 181

Query: 182 --SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
               W I   +      +++    HP Q P  L+ RI +  +   DI+LDPF GSGT+  
Sbjct: 182 PSDVWQIAKVTSGFNRSSEE-RTNHPAQFPLDLIDRITLGFSNENDILLDPFMGSGTTAI 240

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            A K RR+ IG E+++DY ++  KRI S
Sbjct: 241 SALKNRRNVIGFEIREDYCELQAKRIDS 268


>gi|25011171|ref|NP_735566.1| hypothetical protein gbs1120 [Streptococcus agalactiae NEM316]
 gi|23095570|emb|CAD46779.1| unknown [Streptococcus agalactiae NEM316]
          Length = 415

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 53/259 (20%), Positives = 103/259 (39%), Gaps = 22/259 (8%)

Query: 20  KDKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K +++ G++     LE+L      DL   DPPYN+   G+         +A+T   D+  
Sbjct: 156 KHRLMCGDATNPEHLERLLDGVEADLYLTDPPYNVAYQGKTS-------EALTIQNDQMK 208

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           +  A+  F  A   A    LK     ++  +          +    +     ++W K++ 
Sbjct: 209 AT-AFQEFLTAAFQAVDTHLKAGAAFYIWHADSERLSFSKAISATGWLEKQCLIWVKNSF 267

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD---------WLIP 187
           +     + +Q  HE  ++         +  ++         ++ +S          +   
Sbjct: 268 V--LGRQDYQWQHEPCLYGWKPGAKHYFVTDFSLSTVLESSLEGKSKAELIALIKSYQEG 325

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
             +   R+      + HPT KP AL+ R++  S++  D++LD F GSGT+  V ++L R 
Sbjct: 326 QPTSILRVNRPQANQEHPTMKPLALIERLVRHSSRQEDVVLDTFAGSGTTLMVCEQLNRV 385

Query: 248 FIGIEMKQDYIDIATKRIA 266
              +E+   Y+    KR  
Sbjct: 386 NYSMELDPKYVQGILKRFE 404


>gi|300853548|ref|YP_003778532.1| putative methylase [Clostridium ljungdahlii DSM 13528]
 gi|300433663|gb|ADK13430.1| predicted methylase with a ParB-like nuclease domain [Clostridium
           ljungdahlii DSM 13528]
          Length = 414

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 49/252 (19%), Positives = 91/252 (36%), Gaps = 32/252 (12%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K ++I G+S     V + +  K  +L   DPPYN+  +           D++ D      
Sbjct: 168 KHRLICGDSTKTSDVEKLMNGKKANLCVTDPPYNVNYSAGKENERVIKNDSMDDK----- 222

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
              ++  F  +       VL      ++  +           +   F + +  VW K + 
Sbjct: 223 ---SFHEFLLSAFKNIYSVLDDGAGAYIFHADTEGLNFRKAFKEAGFHLSSVCVWVKQSL 279

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +      +FQ  HE +++         +            D +  + W     S S    
Sbjct: 280 VLGRSDYQFQ--HEPVLYGWKPTGKHRWY----------SDRKQTTVWNFDRPSKSP--- 324

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                  HPT KP  L++  + +S+    I+ +PF GSG++    ++  R    IE+ + 
Sbjct: 325 ------DHPTMKPVPLIAYPIKNSSMTNCIVFEPFAGSGSTLIACEQTDRICYAIELDEK 378

Query: 257 YIDIATKRIASV 268
           Y D+  KR    
Sbjct: 379 YCDVIVKRYIEA 390


>gi|270308833|ref|YP_003330891.1| adenine-specific DNA-methyltransferase-like protein
           [Dehalococcoides sp. VS]
 gi|270154725|gb|ACZ62563.1| adenine-specific DNA-methyltransferase-like protein
           [Dehalococcoides sp. VS]
          Length = 312

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 66/287 (22%), Positives = 108/287 (37%), Gaps = 52/287 (18%)

Query: 7   LAINENQNSIFEWK---------DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQL 57
           L  N NQ+S  E+          +KI   +S   +  LP  SV L+   PPYN+      
Sbjct: 37  LYKNINQHSTLEFTENPIDPDKLNKIWCKSS-ENMNDLPDNSVHLMVTSPPYNVGK---- 91

Query: 58  YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT----LWVIGSYHN--- 110
                         +DK  S   Y +  R       RVL P G     +  IG       
Sbjct: 92  -------------EYDKDLSLTEYRSLLRNVFSEVYRVLVPGGRACINIANIGRKPYLPL 138

Query: 111 IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR---------FQNAHETLIWASPSPKA 161
              I +   ++ F +  +I+W K++                   ++ HE ++    +   
Sbjct: 139 HSYIISDCLDIGFLMRGEIIWNKASSSGTSCAWGSWKSPSNPSLRDTHEYILVFCKNSYT 198

Query: 162 KGYTFNYDALKAANED-VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
           +  T ++ +  + +E     +S W  P  S          +  HP   P  L  R++   
Sbjct: 199 RKATKSHISTISRDEFLEYTKSVWTFPTESAK--------KVGHPAPFPVELPYRLIQLY 250

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           T   DI+LDPF GSG +   A K  R +I  ++ + Y+ ++ KRI  
Sbjct: 251 TYEHDIVLDPFSGSGATCIAALKTNRYYISYDIDESYVKLSEKRILE 297


>gi|315616913|gb|EFU97529.1| DNA methylase family protein [Escherichia coli 3431]
          Length = 215

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 95/244 (38%), Gaps = 53/244 (21%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           +   P  +VD I  DPPY +       R   ++    TD W + +  E Y          
Sbjct: 1   MATFPGNAVDFILTDPPYLVGFRD---RQGRTIAGDKTDEWLQPACNEMY---------- 47

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNFRGRRFQNAH- 149
             RVLK +  +     ++ + R     +N  F ++  +V+ K+      + G R + A+ 
Sbjct: 48  --RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYTSKAAYVGYRHECAYI 105

Query: 150 ----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
                  +   P P   G+ +                                 G + HP
Sbjct: 106 LAKGRPALPQKPLPDVLGWKY--------------------------------SGNRHHP 133

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ + Y     +R+
Sbjct: 134 TEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCIAALQSGRRYIGIELLEQYHRAGQQRL 193

Query: 266 ASVQ 269
            +VQ
Sbjct: 194 TAVQ 197


>gi|167914799|ref|ZP_02501890.1| site-specific DNA methyltransferase [Burkholderia pseudomallei 112]
          Length = 258

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 61/259 (23%), Positives = 102/259 (39%), Gaps = 32/259 (12%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDA----- 67
           +    D++   +++++   LP  S+D++F DPPY    L  + +   P    +++     
Sbjct: 14  LSPLLDRLHATDALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSTKYINSGTKTV 73

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
            TD         A+  +  AWL  CRR LKP G L     +  +  +  ++Q     +  
Sbjct: 74  YTDFESDNMDQRAWAFWCHAWLSECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILRG 133

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
             VW K+      R   F    E ++W               A + A  D ++    + P
Sbjct: 134 VAVWDKTPGRTRPRRGGFAQQAEFVVW---------------ASRGAMRDCEVYLPGVFP 178

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                         K H T+KP   ++R +V     G ++ D F GSGT  A A++    
Sbjct: 179 --------CRLPLPKQHVTEKPLD-IAREVVRLVPAGGVVCDLFAGSGTFLAAAREAGLH 229

Query: 248 FIGIEMKQDYIDIATKRIA 266
           +IG E    Y  IA  R+ 
Sbjct: 230 WIGCETNAAYHAIALHRLG 248


>gi|22299421|ref|NP_682668.1| DNA-methyltransferase [Thermosynechococcus elongatus BP-1]
 gi|22295604|dbj|BAC09430.1| DNA-methyltransferase [Thermosynechococcus elongatus BP-1]
          Length = 292

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 64/279 (22%), Positives = 113/279 (40%), Gaps = 57/279 (20%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G+   V+ ++P +++ LIF  PPYNL                   +++   + E Y    
Sbjct: 5   GDICEVVRQVPDEAMTLIFTSPPYNLGK-----------------AYETPVAIEDYLQSQ 47

Query: 86  RAWLLACRRVLKPNGTL-WVIGS-------YHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            A +    RVL+P G+L W +G+       Y        + + L   + N I+W+  + +
Sbjct: 48  SAVIAELYRVLRPEGSLCWQVGNFVQRGEVYPLDILFYPLFKRLGLKLRNRIIWKFGHGL 107

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS--------------- 182
                +RF   +ET++W +    +  Y FN DA++   +    R                
Sbjct: 108 --HATKRFSGRYETILWFTK---SDEYIFNLDAVRIPAKYPGKRHFKGPNKGKPSGNPLG 162

Query: 183 ------------DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
                       DW   +        N   + LHP Q P  L+ R +++ +  GD + DP
Sbjct: 163 KNPSDVWEVVVQDWQELVWDIPNVKSNHPEKTLHPCQFPIELVERCVLALSHEGDWVFDP 222

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           + G G+S   A    R  +G E +  Y++IA +RI + +
Sbjct: 223 YMGVGSSLLAALMHNRRAMGCEKEPAYVNIARQRIQAYE 261


>gi|118575712|ref|YP_875455.1| DNA modification methylase [Cenarchaeum symbiosum A]
 gi|118194233|gb|ABK77151.1| DNA modification methylase [Cenarchaeum symbiosum A]
          Length = 288

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 72/279 (25%), Positives = 110/279 (39%), Gaps = 54/279 (19%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +++I  G++ +VL KL   SVDL    PPY                       D    ++
Sbjct: 30  RNRIYCGDAAAVLAKLGDGSVDLAVTSPPY-----------------------DNLRDYQ 66

Query: 80  AYDAFTRAWLLACRRVLKPNGTL-WVIGS------YHNIFRIGTMLQNLNFWILNDIVWR 132
            Y            RVL+  G L WV+G           FR G   Q+L F + + +++R
Sbjct: 67  GYSFDFDGICSQLYRVLRKGGVLVWVVGDRIAGGRSLTSFRQGLAFQDLGFSMHDIMIYR 126

Query: 133 KSNPMPNFRGRRFQNAHETLIWASP---------------------SPKAKGYTFNYDAL 171
           K N  P  R   + N +E +   S                          K    N   L
Sbjct: 127 KKNT-PFMRSNAYTNCYEFMFVLSKGRPRVFRPIMEKTKRSGMEMLVHNKKSDGINKKTL 185

Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
                +    + W   +  G     ++   K HP   PE L    ++S +KPGD++LDP 
Sbjct: 186 AELKPEKTRTNIWDYAVGLGG-TTCDRFAFK-HPAMFPEKLAQDHILSWSKPGDLVLDPM 243

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
            GSGT+  +A    R +IGIE+ ++Y  IA +R+A +Q 
Sbjct: 244 CGSGTTCKMAAANGRDYIGIEISKEYAAIARRRMAGIQK 282


>gi|297585281|ref|YP_003701061.1| DNA methylase N-4/N-6 domain-containing protein [Bacillus
           selenitireducens MLS10]
 gi|297143738|gb|ADI00496.1| DNA methylase N-4/N-6 domain protein [Bacillus selenitireducens
           MLS10]
          Length = 413

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 51/266 (19%), Positives = 101/266 (37%), Gaps = 35/266 (13%)

Query: 20  KDKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + K+I G+S         +  +  +L+  DPPYN+  + +     +          DK  
Sbjct: 165 RHKLICGDSTDPDVYAALMGGEEANLVVTDPPYNVNYSSKAGSIQN----------DKQE 214

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             + Y +F        + V+  + +++V  +    +      ++  F++    +W K + 
Sbjct: 215 DGDFY-SFLLKAYQNMKTVMAKDASIYVFHADTEGYNFRKAFKDAGFYLSGVCIWAKQSL 273

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +       +Q  HE +++         +  +       + D   +SD             
Sbjct: 274 V--LGRSPYQWKHEPVLFGWRQDGKHEWYGDRKQSTLWHFDRPSKSD------------- 318

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                 LHPT KP AL +  + +S+    I+LDPF GSG++    ++  R    IE+   
Sbjct: 319 ------LHPTMKPVALCAYPIQNSSLSNCIVLDPFGGSGSTMMACEQTNRIARLIELDPK 372

Query: 257 YIDIATKRIASVQPLGNIELTVLTGK 282
           Y D+  KR    +   +    +  GK
Sbjct: 373 YADVIVKRYIDFKERTDDVTLIRDGK 398


>gi|308182437|ref|YP_003926564.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter pylori
           PeCan4]
 gi|308064622|gb|ADO06514.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter pylori
           PeCan4]
          Length = 252

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 95/254 (37%), Gaps = 27/254 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+ +SVLE       DL    PPYNL +  Q                + F +++ Y 
Sbjct: 12  LYHGD-VSVLETFEKGFYDLCITSPPYNLSIEYQGS--------------NDFRAYDDYL 56

Query: 83  AFTRAWLLACRRVLKPNGTLW--------VIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            + + WL  C    K    L           G       I  + +   +   N I+W +S
Sbjct: 57  NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNES 116

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N         +  A       + +P      F  +  K   +   +  +  +   +G   
Sbjct: 117 NISRRTAWGSWLQASAP---YAIAPVELIVVFYKNEYKRQKQTSTISKEEFLLYTNGLWN 173

Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
              +  ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E+
Sbjct: 174 FSGESKKRLKHPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEI 233

Query: 254 KQDYIDIATKRIAS 267
           +++Y +++ KRI  
Sbjct: 234 EKEYCELSKKRILE 247


>gi|47092597|ref|ZP_00230385.1| adenine methyltransferase, putative [Listeria monocytogenes str. 4b
           H7858]
 gi|254900839|ref|ZP_05260763.1| hypothetical protein LmonJ_13526 [Listeria monocytogenes J0161]
 gi|47019025|gb|EAL09770.1| adenine methyltransferase, putative [Listeria monocytogenes str. 4b
           H7858]
          Length = 435

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 117/265 (44%), Gaps = 12/265 (4%)

Query: 20  KDKIIKGNSISVL---EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           +  ++ G++ +++   + +  K VDL+  DPPYN+ +       + S   ++ +  D  +
Sbjct: 177 RHFLMCGDTTNIVDVQQLMQGKQVDLVITDPPYNVAVESDNKNLEKSGRSSILN--DDMT 234

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E +D F      + ++V+  +  ++V             ++  N  + +  +W K+ P
Sbjct: 235 D-EQFDMFLAKVFQSYQKVMAGHAAIYVFHPSSYQIEFENSMKLANIQVRSQCIWIKNYP 293

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
              +   R+Q  HE + +A    ++  +  +        +   +  +      +  E  R
Sbjct: 294 SFGWSQYRWQ--HEPVFYAHLKGESPFWYGDRKQTTTWRDHSYLGEE----ASTIWEIAR 347

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           + +   +HPTQKP  LL+  + +S+K GD I D F GSG++   A++L R    +E+   
Sbjct: 348 DSNNTYIHPTQKPLDLLAIPMRNSSKKGDTIADFFGGSGSTLLTAEQLGRICYTMELDPK 407

Query: 257 YIDIATKRIASVQPLGNIELTVLTG 281
           + D   +R  +   +  + +  LT 
Sbjct: 408 FCDAIKQRFEAYTGIKPVLMQQLTT 432


>gi|317179342|dbj|BAJ57130.1| adenine specific DNA methyltransferase [Helicobacter pylori F30]
          Length = 252

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 97/254 (38%), Gaps = 27/254 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G++ SVLE       DL    PPYNL +  Q                + F +++ Y 
Sbjct: 12  LYHGDA-SVLETFEKGFYDLCITSPPYNLSIEYQGS--------------NDFRAYDDYL 56

Query: 83  AFTRAWLLACRRVLKPNGTLW--------VIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            + + WL  C    K    L           G       +  + +   +   N I+W +S
Sbjct: 57  NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADMIAIAKECGWKYQNTIIWNES 116

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N         +  A  +    + +P      F  +A K   +   +  +  +   +G   
Sbjct: 117 NISRRTAWGSWLQASAS---YAIAPVELIVVFYKNAYKRQKQTSTISKEEFLLYTNGLWS 173

Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
              +  ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E+
Sbjct: 174 FSGESKKRLKHPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEI 233

Query: 254 KQDYIDIATKRIAS 267
           +++Y +++ KRI  
Sbjct: 234 EKEYCELSKKRILE 247


>gi|109899594|ref|YP_662849.1| DNA methylase N-4/N-6 [Pseudoalteromonas atlantica T6c]
 gi|109701875|gb|ABG41795.1| DNA methylase N-4/N-6 [Pseudoalteromonas atlantica T6c]
          Length = 218

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 101/245 (41%), Gaps = 29/245 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++ + +++  L+ LPA SVDL+  DPPY      +       L  + + S + F+ F   
Sbjct: 2   RLFQQDAVEWLQSLPANSVDLVITDPPYESLEKHRAKGTTTRLKHSKSSSNEWFAIFPN- 60

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F         RVLK N   ++      +F I  + +   F     +VW K        
Sbjct: 61  TRFIELV-AEIYRVLKHNSHFYLFCDQETMFVIKPLAEAAGFKFWKPLVWDKC---AIGM 116

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G  ++  +E +++     +                             S  + L+ K   
Sbjct: 117 GYHYRARYEFILFFEKGKRKLQD------------------------LSMPDVLQEKRVW 152

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           + +PT+KP  L+ +++V S+  GD+++DPFFGSG +   A+   R + G ++     + A
Sbjct: 153 RGYPTEKPVPLIEKLIVQSSSEGDLVIDPFFGSGATLVAAQNCNREWQGADLSPSAHEHA 212

Query: 262 TKRIA 266
            KR+ 
Sbjct: 213 VKRLG 217


>gi|308274323|emb|CBX30922.1| hypothetical protein N47_E44340 [uncultured Desulfobacterium sp.]
          Length = 312

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 58/278 (20%), Positives = 99/278 (35%), Gaps = 49/278 (17%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
            G+ + +L++ P    +LI   PPY                D+ + ++      E Y  +
Sbjct: 3   NGDCLEILKQYPDNFFNLIVTSPPY---------------ADSRSKTYGGIKPNE-YVGW 46

Query: 85  TRAWLLACRRVLKPNGTLWVIG--------SYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
                    RVLK +GT  +           +  +  +   L+   +    + VW K N 
Sbjct: 47  FLLRAKEFLRVLKSDGTFILNIKEKAVNGERHTYVLELILALREQGWLWTEEFVWHKKNC 106

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA----------------------- 173
            P     RF++A E  +  + S K   Y                                
Sbjct: 107 FPGKWPNRFRDAWERCLQFNKSNKFNMYQDEVMVPMGDWAKNRLKKLSNTDRTRDESKVN 166

Query: 174 --ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
               ++V    D  +   +       +   K H    P++L    +   TK  D +LDPF
Sbjct: 167 SGFGKNVSNWVDRDMAYPTNVLHFATECYNKNHSAVFPKSLPEWFIKLFTKEHDWVLDPF 226

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            GSGT+  VA+ L R+ +GI++  +Y  +A +R A  Q
Sbjct: 227 VGSGTTAEVAQNLNRNSVGIDILPEYCKLANERAAHYQ 264


>gi|262200004|ref|YP_003271213.1| DNA methylase N-4/N-6 domain protein [Haliangium ochraceum DSM
           14365]
 gi|262083351|gb|ACY19320.1| DNA methylase N-4/N-6 domain protein [Haliangium ochraceum DSM
           14365]
          Length = 313

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 65/256 (25%), Positives = 99/256 (38%), Gaps = 41/256 (16%)

Query: 36  PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRV 95
              SVDL+ ADPPY +                  + WD F+S EAY  +  AWL    RV
Sbjct: 51  DDGSVDLVVADPPYGIA----------------KERWDDFASLEAYVDWCDAWLAEVARV 94

Query: 96  LKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
           L P G+ +V G    +  +              ++W   N      G  +  +HE+++  
Sbjct: 95  LSPAGSAYVCGFSEILAEVKARSARRFAGGCRWLIWYYRNKAN--LGSDWGRSHESILHL 152

Query: 156 SPSP-----------KAKGYTFNYDALKAANEDVQ---MRSDWLIPICSGSER------- 194
                              +T  Y     A         R D   P   G++        
Sbjct: 153 RKQRRLRLDIDAVRVPYNDHTRKYPERVQAESSQYGQGRRRDRWQPHPLGAKPRDVFEIP 212

Query: 195 --LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
                   +  H TQKPE L+ R +  +T PG ++LDPF GSGT+  VA++L R +I  +
Sbjct: 213 VLCNGMAEKTAHSTQKPEELVRRFIAGTTSPGALVLDPFAGSGTTAVVAQRLGRRWIAGD 272

Query: 253 MKQDYIDIATKRIASV 268
               Y+ +A +R+   
Sbjct: 273 SDARYVGLARERLRDA 288


>gi|188527069|ref|YP_001909756.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter pylori
           Shi470]
 gi|188143309|gb|ACD47726.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter pylori
           Shi470]
          Length = 252

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 95/254 (37%), Gaps = 27/254 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+ +SVLE       DL    PPYNL +  Q                + F +++ Y 
Sbjct: 12  LYHGD-VSVLETFEKGFYDLCITSPPYNLSVEYQGS--------------NDFRAYDDYL 56

Query: 83  AFTRAWLLACRRVLKPNGTLW--------VIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            + + WL  C    K    L           G       I  + +   +   N I+W +S
Sbjct: 57  NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNES 116

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N         +  A       + +P      F  +  K   +   +  +  +   +G   
Sbjct: 117 NISRRTAWGSWLQASAP---YAIAPVELIVVFYKNEYKRQKQTSTISKEEFLLYTNGLWN 173

Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
              +  ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E+
Sbjct: 174 FSGESKKRLKHPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEI 233

Query: 254 KQDYIDIATKRIAS 267
           +++Y +++ KRI  
Sbjct: 234 EKEYCELSKKRILE 247


>gi|210617274|ref|ZP_03291500.1| hypothetical protein CLONEX_03722 [Clostridium nexile DSM 1787]
 gi|210149378|gb|EEA80387.1| hypothetical protein CLONEX_03722 [Clostridium nexile DSM 1787]
          Length = 270

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 60/292 (20%), Positives = 103/292 (35%), Gaps = 39/292 (13%)

Query: 1   MSQKNSLAINEN------QNSIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
           M   N L++ E            E ++ +I+ G+++ +++       D +  DPPY    
Sbjct: 2   MPMTNGLSLEELMKEGTYPEEYAEGENWRILHGDTLKLVKAFQPGIFDAVITDPPYASGG 61

Query: 54  NGQLYRP--------DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI 105
             Q  R           S  +A+ D         ++  +   WL   R+  K    + + 
Sbjct: 62  TKQNERNRTTNQKYSSMSAANALPDFDGDNKDQRSWTHWMAEWLYDVRKACKKGAPICLF 121

Query: 106 GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
             +     I   LQ   +      VW K N  P     RF+   E ++W S  P      
Sbjct: 122 IDWRQYPSITDALQWAGWIWRGTAVWDKGNSRPQ--KGRFRQQAEYIVWGSNGPM----- 174

Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
                            +  +    G  R  N    ++H T+KP  L+  ++    +PG 
Sbjct: 175 ---------------PINRPVSCLPGVFRYGNPQ-NRIHVTEKPLQLMKDVIQI-CEPGG 217

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
           +ILDPF G+GT+   A       +GIE+   Y  + + R+         E  
Sbjct: 218 LILDPFAGAGTTVLAAVTTGYRAVGIEVTDAYYKLGSDRVKFALEAEENEDE 269


>gi|258541897|ref|YP_003187330.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-01]
 gi|256632975|dbj|BAH98950.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-01]
 gi|256636032|dbj|BAI02001.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-03]
 gi|256639087|dbj|BAI05049.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-07]
 gi|256642141|dbj|BAI08096.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-22]
 gi|256645196|dbj|BAI11144.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-26]
 gi|256648251|dbj|BAI14192.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-32]
 gi|256651304|dbj|BAI17238.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654295|dbj|BAI20222.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-12]
          Length = 285

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 63/270 (23%), Positives = 112/270 (41%), Gaps = 43/270 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I+ G+ +  L+++PA+SVD++   PPYN+ L+ + Y                    E Y
Sbjct: 31  EIVMGDCLRALKRVPAESVDVVVTSPPYNIGLSYRSYP--------------DRREEEDY 76

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGS-----YHNIFRIGTMLQNLNFWILNDIVW----- 131
             +        +R+LK +G+ ++  S         F +   L++L F + N I W     
Sbjct: 77  LDWMLEVAQQLQRILKDDGSFFLNISGSSAQPWLPFELAVRLRDL-FVLQNHISWVKSIS 135

Query: 132 ----RKSNPMPNFRGRRFQNAHETLIWASPSPKAK--------GYTFN-YDALKAANEDV 178
                  +  P    R     HE +   +     +         Y      A +   +D 
Sbjct: 136 VGEDSFGHFKPMNSQRFLHRGHEHVFHFTLHGDVRLDRLRAGVPYKDKSNIARRGHRQDR 195

Query: 179 QMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           + R D W IP     E +R +  +  HP   P AL  + ++   + G  +LDPF G+GT+
Sbjct: 196 RCRGDTWFIPY----ETVRGRAEKFDHPGTFPVALPEQCILLHGREGARVLDPFMGTGTT 251

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
              A++L    +G+E+  +Y+ IA  R+  
Sbjct: 252 LLAAQRLGCYGLGMELDPEYVAIARARLKD 281


>gi|317498249|ref|ZP_07956548.1| DNA methylase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894458|gb|EFV16641.1| DNA methylase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 438

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 111/265 (41%), Gaps = 32/265 (12%)

Query: 20  KDKIIKGNS---ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G+S   + V + +  +  DL+  DPPYN+       + D+              
Sbjct: 172 RHRLMCGDSASELDVSQLMAGEEADLVITDPPYNVNYKDGSIKNDN-------------M 218

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
              +++ F +   LA    ++P    ++  +           ++  F +   ++W K++ 
Sbjct: 219 DEGSFEVFLQNAFLAMFEFMRPGAAAYIFHADSEGLAFRRAFRDAGFKLAECLIWEKNSF 278

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV-----QMRSDWLIPICSG 191
           +     + +Q  HE +++      A  +  +        ED        + D +  I   
Sbjct: 279 V--LGRQDYQWRHEPILYGWKEGAAHYFIDDRSQDTVLLEDELDLESMKKQDLITYIHQI 336

Query: 192 SERLRNKD---------GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
            +  ++K             +HPT KP AL+ +++ +S+KP   +LD F GSG++   A+
Sbjct: 337 IDSQKDKTTVIFENKPTKNDVHPTMKPVALIGKLMKNSSKPEWNVLDLFGGSGSTLMAAE 396

Query: 243 KLRRSFIGIEMKQDYIDIATKRIAS 267
           +L R+   +E+ + + D+  +R  +
Sbjct: 397 QLNRTAFLMELDEKFCDVIVRRWEN 421


>gi|163733749|ref|ZP_02141191.1| probable DNA-methyltransferase protein (hemagglutinin-associated
           protein) [Roseobacter litoralis Och 149]
 gi|161392860|gb|EDQ17187.1| probable DNA-methyltransferase protein (hemagglutinin-associated
           protein) [Roseobacter litoralis Och 149]
          Length = 226

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 97/260 (37%), Gaps = 41/260 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++II G++ +VL+ +   SVDL+  DPPY +    +  R   +  +              
Sbjct: 4   NQIINGDAAAVLKTIEEGSVDLVITDPPYLVNYKDRQGRSLQNDNNLGG----------- 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                        R +K +        +  + +     +     I+++IVW K       
Sbjct: 53  ----VLPVFEPMARAMKQSSYAICFSGWSALPQFTQAWEAAGLKIVSEIVWSKKYTS--- 105

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           R    Q  HE+    +    AK               +     W+              G
Sbjct: 106 RRGFTQYRHESAYVLAKGNPAK-----------PARPMSSVQGWVY------------SG 142

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K HPT+K   +L+ ++   +KPGD++ DPF GS ++   A    R ++GIE+++ + + 
Sbjct: 143 NKRHPTEKAVEILAPLVRCFSKPGDLVCDPFSGSDSTSVAAVLNGRDYLGIELEKAHCET 202

Query: 261 ATKRIASVQPLGNIELTVLT 280
           A  R+   +     + T   
Sbjct: 203 ARARLTEARRYRAEQATQYQ 222


>gi|332653193|ref|ZP_08418938.1| DNA (cytosine-5-)-methyltransferase [Ruminococcaceae bacterium D16]
 gi|332518339|gb|EGJ47942.1| DNA (cytosine-5-)-methyltransferase [Ruminococcaceae bacterium D16]
          Length = 240

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 60/252 (23%), Positives = 100/252 (39%), Gaps = 31/252 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ------LNGQLYRPDHSLVDAVTDSWD-K 74
           +II G+++ VL +    + D +  DPPY          N    +   S+ ++    +D  
Sbjct: 6   EIIHGDALKVLREFAPNTFDAVITDPPYASGGRTQAEKNKSTDKKYSSMGESAPPPFDGD 65

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
                ++  +   WL   R+V KP   + +   +  +      LQ   +      VW K 
Sbjct: 66  SKDQRSWTRWAAEWLYDARKVCKPGAPVCMFIDWRQLPAATDALQWAGWIWRGTAVWDKG 125

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N  P     RF+   E ++W S                    +  M     +P   G  +
Sbjct: 126 NSRPQ--KGRFRQQAEYIVWGS--------------------NGDMPISRPVPCLPGVFK 163

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
             N    ++H T+KP  L+  ++   T+PG  ILDPF GSG++   A     S  GIE+ 
Sbjct: 164 YGNPQ-NRIHLTEKPLQLMRDVVKI-TEPGGRILDPFAGSGSTVLAAVLEGYSATGIEVT 221

Query: 255 QDYIDIATKRIA 266
             Y  ++ +RIA
Sbjct: 222 DAYAALSKERIA 233


>gi|208434209|ref|YP_002265875.1| typeII DNA modification enzyme [Helicobacter pylori G27]
 gi|208432138|gb|ACI27009.1| typeII DNA modification enzyme [Helicobacter pylori G27]
          Length = 261

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 94/254 (37%), Gaps = 27/254 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G++ SVLE       DL    PPYNL +  Q                + F +++ Y 
Sbjct: 21  LYHGDA-SVLETFEKGFYDLCVTSPPYNLSIEYQGS--------------NDFRAYDDYL 65

Query: 83  AFTRAWLLACRRVLKPNGTLW--------VIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            + + WL  C    K    L           G       I  + +   +   N I+W +S
Sbjct: 66  NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLEADITIVAKECGWKYQNTIIWNES 125

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N         +  A       + +P      F  +  K   +   M  +  +   +G   
Sbjct: 126 NISRRTAWGSWLQASAP---YAIAPVELIVVFYKNEYKRQKQTSTMSREEFLLYTNGLWS 182

Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
              +  + L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E+
Sbjct: 183 FSGESKKHLKHPAPFPRELPRRCIQLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEI 242

Query: 254 KQDYIDIATKRIAS 267
           +++Y +++ KRI  
Sbjct: 243 EKEYCELSKKRILE 256


>gi|217033446|ref|ZP_03438876.1| hypothetical protein HP9810_1g60 [Helicobacter pylori 98-10]
 gi|216944151|gb|EEC23579.1| hypothetical protein HP9810_1g60 [Helicobacter pylori 98-10]
 gi|261837709|gb|ACX97475.1| cytosine methyltransferase [Helicobacter pylori 51]
 gi|261839119|gb|ACX98884.1| DNA modification methylase [Helicobacter pylori 52]
          Length = 252

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 95/254 (37%), Gaps = 27/254 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G++ SVLE       DL    PPYNL +  Q                + F +++ Y 
Sbjct: 12  LYHGDA-SVLETFEKGFYDLCVTSPPYNLSIEYQGS--------------NDFRAYDDYL 56

Query: 83  AFTRAWLLACRRVLKPNGTLW--------VIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            + + WL  C    K    L           G       +  + +   +   N I+W +S
Sbjct: 57  NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADMIAIAKECGWKYQNTIIWNES 116

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N         +  A       + +P      F  +  K   +   +  +  +   +G   
Sbjct: 117 NISRRTAWGSWLQASAP---YAIAPVELIVVFYKNEYKRQKQTSTISKEEFLLYTNGLWS 173

Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
              +  ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E+
Sbjct: 174 FSGESKKRLKHPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEI 233

Query: 254 KQDYIDIATKRIAS 267
           +++Y +++ KRI  
Sbjct: 234 EKEYCELSKKRILE 247


>gi|160886756|ref|ZP_02067759.1| hypothetical protein BACOVA_04769 [Bacteroides ovatus ATCC 8483]
 gi|298383581|ref|ZP_06993142.1| DNA (cytosine-5-)-methyltransferase [Bacteroides sp. 1_1_14]
 gi|156107167|gb|EDO08912.1| hypothetical protein BACOVA_04769 [Bacteroides ovatus ATCC 8483]
 gi|298263185|gb|EFI06048.1| DNA (cytosine-5-)-methyltransferase [Bacteroides sp. 1_1_14]
          Length = 267

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 62/265 (23%), Positives = 95/265 (35%), Gaps = 38/265 (14%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I   + I  ++ +   SVD + AD PY +     L R + ++       WD+    EA
Sbjct: 5   DNIYNMDCIEGMKLMANGSVDAVIADLPYGV-----LNRSNKAV------HWDRQIPLEA 53

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                       RR+ KP   + +      IF    ML     W  N +  +        
Sbjct: 54  LWE-------QYRRITKPGSPVILFA--QGIFSARLMLSQPRMWRYNLVWRKDRVTGHLN 104

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL--------------- 185
             R     HE +I                  +  N   +    +                
Sbjct: 105 ANRMPLRQHEDIIVFYDRQPVYHPQMMPCPPERKNHGRRKTDGFTNRCYGEMKLAPVRVA 164

Query: 186 ---IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
               P    S    +K G   HPTQKP AL+  ++ + T  GD++LD   GSGT+   A 
Sbjct: 165 EDKYPTSVISIPKEHKTGAFYHPTQKPVALIEYLMRTYTNEGDVVLDNCIGSGTTAIAAI 224

Query: 243 KLRRSFIGIEMKQDYIDIATKRIAS 267
           +  R +IG E++  Y +IA +RI  
Sbjct: 225 RTGRHYIGFEIEPTYCEIAGRRIRE 249


>gi|153854020|ref|ZP_01995353.1| hypothetical protein DORLON_01344 [Dorea longicatena DSM 13814]
 gi|149753402|gb|EDM63333.1| hypothetical protein DORLON_01344 [Dorea longicatena DSM 13814]
          Length = 270

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 59/281 (20%), Positives = 102/281 (36%), Gaps = 39/281 (13%)

Query: 1   MSQKNSLAINEN------QNSIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
           M   N L++ E            E ++ +I+ G+++ +++       D +  DPPY    
Sbjct: 2   MPMTNGLSLEELMKEGTYPEEYAEGENWRILHGDTLKLVKAFQPGIFDAVITDPPYASGG 61

Query: 54  NGQLYRP--------DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI 105
             Q  R           S  +A+ D         ++  +   WL   R+  K    + + 
Sbjct: 62  TKQNERNRTTNQKYSSMSAANALPDFDGDNKDQRSWTHWMAEWLYDVRKACKKGAPICLF 121

Query: 106 GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
             +     I   LQ   +      VW K N  P     RF+   E ++W S  P      
Sbjct: 122 IDWRQYPSITDALQWAGWIWRGTAVWDKGNSRPQ--KGRFRQQAEYIVWGSNGPM----- 174

Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
                            +  +    G  R  N    ++H T+KP  L+  ++    +PG 
Sbjct: 175 ---------------PINRPVSCLPGVFRYGNPQ-NRIHVTEKPLQLMKDVIQI-CEPGG 217

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           +ILDPF G+GT+   A       +GIE+   Y  + + R+ 
Sbjct: 218 LILDPFAGAGTTVLAAVMTGYRAVGIEVTDAYYKLGSDRVR 258


>gi|159896851|ref|YP_001543098.1| site-specific DNA-methyltransferase [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159889890|gb|ABX02970.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 282

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 62/265 (23%), Positives = 115/265 (43%), Gaps = 28/265 (10%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +++I+G  + V+  +  +S++L++ DPP+         R       A  D W        
Sbjct: 7   NQLIQGEMLDVIGSIAPQSINLLYLDPPFA------AGRVFADSAGAFDDRWQG--GLTE 58

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y A+    L+A RR++  +G+L++      +     +L     +                
Sbjct: 59  YLAWLEQRLVAARRIVAEHGSLFLHLDRRAVHYAKVLLDQTWGFECFRNEIIWHYTGGGR 118

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
             R F + H+T++W S  P+   +TFN  A++   +     +   I   +G   L + DG
Sbjct: 119 ARRSFSHKHDTILWYSKHPQ--HWTFNLQAMRQPYKASSGFAKAGIRSAAGKRYLPHPDG 176

Query: 201 EKL------------------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
             +                  +PTQKPE LL RI+++++  GD++ D   GSGT+ AVA+
Sbjct: 177 TPVDDVWDIPMLNPMAAERLGYPTQKPERLLERIILAASNSGDLVADLCCGSGTTAAVAQ 236

Query: 243 KLRRSFIGIEMKQDYIDIATKRIAS 267
           +L R +I  +   D + +   R+  
Sbjct: 237 RLGRCWIAADQSADALALVRGRLRQ 261


>gi|269976470|ref|ZP_06183455.1| DNA methylase N-4/N-6 domain-containing protein [Mobiluncus
           mulieris 28-1]
 gi|269935271|gb|EEZ91820.1| DNA methylase N-4/N-6 domain-containing protein [Mobiluncus
           mulieris 28-1]
          Length = 441

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 70/315 (22%), Positives = 129/315 (40%), Gaps = 40/315 (12%)

Query: 21  DKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLNG----QLYRPDHSLVDA--VTDS 71
           +++  G +++ L  L  +    VD ++ DPPYN Q +      L+     +++     D 
Sbjct: 47  NRLYVGENLAALGALAGEFAGGVDCVYIDPPYNSQADYVAKMALHGDGGQILEQKQYGDR 106

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDI 129
           WD       Y  F    L A R +L   G+++V   +H    +  +   +     +LN+I
Sbjct: 107 WDD----AQYLQFMFERLGALRELLADTGSIFVHCDWHAAASLRLVCDEVFGSRNLLNEI 162

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN-----YDALKAANEDVQMRSDW 184
           VW   +   + R    +  H+T+++ + + +   +  +     Y A  A         + 
Sbjct: 163 VWIYGSGGGSRRRFGRK--HDTILFYAKNARRNFFDPDAVRVPYRAAIAPKRRGLFHPEG 220

Query: 185 LI--PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           ++   +        +      +PTQKP A++ R L  +  PG ++LD F GSG++   A 
Sbjct: 221 MVAPDVWDIPRPPNHATSWVGYPTQKPLAVMERALRGACPPGGLVLDCFAGSGSTLVAAA 280

Query: 243 KLRRSFIGIEMKQDYIDIATKRIAS------VQPLGNIELTVLTGKRTEPRVAFNLLVER 296
            L   FIG+E     + +A KR+ S      V  +G+  L  L  KR  P          
Sbjct: 281 GLGLRFIGVECAALGVHLARKRLVSLGASFGVWRVGDTHLMNLGDKRQPPHHP------- 333

Query: 297 GLIQPGQILTNAQGN 311
              +PG++  +    
Sbjct: 334 ---KPGELNRDKSNR 345


>gi|288817544|ref|YP_003431891.1| DNA methylase [Hydrogenobacter thermophilus TK-6]
 gi|288786943|dbj|BAI68690.1| DNA methylase [Hydrogenobacter thermophilus TK-6]
 gi|308751147|gb|ADO44630.1| DNA methylase N-4/N-6 domain protein [Hydrogenobacter thermophilus
           TK-6]
          Length = 318

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 59/264 (22%), Positives = 106/264 (40%), Gaps = 27/264 (10%)

Query: 17  FEWKDKIIKGNSISV-LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
            + + +++  + + V LE+L  K V+LI   PPYN+ +                   D  
Sbjct: 67  DDGQIRLLLNDFLKVDLEELRGK-VNLIVTSPPYNVGMEYGTI--------------DDS 111

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVI--------GSYHNIFRIGTMLQNLNFWILN 127
             +E Y  FT  +L    ++L  +G + +         G       +  + + +     +
Sbjct: 112 MGYEEYLRFTERYLKRFYQLLADDGRVCLNIPLDKNKGGIQSVYADVVCLAKKVGLKYQS 171

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
            IVW + N         + +A    I A        Y  ++           +  +  I 
Sbjct: 172 TIVWNEQNISRRTAWGSWLSASAPYIIAPVEMVVLLYKEDWKRRD--RGKTTISREEFIE 229

Query: 188 ICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
             +G      ++ + L HP   P  L  R +   +  GD++LDPF GSGT+    +KL R
Sbjct: 230 WTNGMWTFPGENRKALGHPAPFPLELPLRCIKLFSYEGDLVLDPFVGSGTTMVACRKLNR 289

Query: 247 SFIGIEMKQDYIDIATKRIASVQP 270
             +GI++ ++Y+ +A KRI  V P
Sbjct: 290 KGVGIDINKNYLKLAVKRIKEVSP 313


>gi|154500275|ref|ZP_02038313.1| hypothetical protein BACCAP_03941 [Bacteroides capillosus ATCC
           29799]
 gi|150271007|gb|EDM98281.1| hypothetical protein BACCAP_03941 [Bacteroides capillosus ATCC
           29799]
          Length = 244

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 99/252 (39%), Gaps = 31/252 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ------LNGQLYRPDHSLVDAVTDSWD-K 74
           +II G+++ VL +    + D +  DPPY          N    +   S+ ++    +D  
Sbjct: 13  EIIHGDALKVLREFAPNTFDAVITDPPYASGGRTQAEKNKSTDKKYSSMGESAPPPFDGD 72

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
                ++  +   WL   R+V KP   + +   +  +      LQ   +      VW K 
Sbjct: 73  SKDQRSWTRWAAEWLYDARKVCKPGAPVCMFIDWRQLPAATDALQWAGWIWRGTAVWDKG 132

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N  P     RF+   E ++W S                    +  M     +P   G  +
Sbjct: 133 NSRPQ--KGRFRQQAEYIVWGS--------------------NGDMPISRPVPCLPGVFK 170

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
             N    ++H T+KP  L+  ++   T+PG  ILDPF GSG++   A     S  GIE+ 
Sbjct: 171 YGNPQ-NRIHLTEKPLQLMRDVVKI-TEPGGRILDPFAGSGSTVLAAVLEGYSATGIEVT 228

Query: 255 QDYIDIATKRIA 266
             Y  ++ +RI 
Sbjct: 229 DAYAALSKERIE 240


>gi|163850239|ref|YP_001638282.1| DNA methylase N-4/N-6 domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|163661844|gb|ABY29211.1| DNA methylase N-4/N-6 domain protein [Methylobacterium extorquens
           PA1]
          Length = 488

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 112/253 (44%), Gaps = 17/253 (6%)

Query: 21  DKIIKG-----NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
            +++       ++ ++L  L  +SV ++F+DPPYN+ ++G +             +  + 
Sbjct: 194 HRLLCASALEADNYAML--LQGESVRMVFSDPPYNVPVSGHVCGLGKVQHREFAMASGEM 251

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
           S  E + AF    +   R    P G +++   + ++F + T  + +    LN  VW K+N
Sbjct: 252 SEAE-FVAFLVQAMAHLRERQVPGGLMYLAMDHRHVFELSTAARQIGLEQLNICVWNKTN 310

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
                 G  +++ HE +        A   T     ++         + W     +   R 
Sbjct: 311 AG---MGSFYRSKHELIFVLRKPGAAHLNT-----VELGRHGRYRTNVWDYAGVNTFGRH 362

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           R ++    HPT KP AL+   +   T+ G+ +LD F GSGT+   A++  R   GIE+  
Sbjct: 363 RMQELSS-HPTVKPVALVVDAIKDCTRRGERVLDAFCGSGTTLIAAERAGRVGYGIELDP 421

Query: 256 DYIDIATKRIASV 268
            Y+D+A +R  ++
Sbjct: 422 VYVDVAVRRWQAL 434


>gi|326939606|gb|AEA15502.1| DNA methylase N-4/N-6 [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 326

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 69/330 (20%), Positives = 113/330 (34%), Gaps = 95/330 (28%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +K+  G+ + VL+  P   V  +   PPY    +             V       ++ E 
Sbjct: 4   NKVYPGHCLDVLKTFPDNFVSTVVTSPPYWGLRDY-----------GVDGQIGLEATVEE 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHN------------------------------ 110
           Y +   +     +RVLK +GTLW+                                    
Sbjct: 53  YVSNLVSVFREVKRVLKDDGTLWLNLGDVYAGSGRGRNADGKGNPGNNHFQSVGQVTGIV 112

Query: 111 -----------------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
                             +R+   LQ   +++  DIVW K N MP     R   +HE + 
Sbjct: 113 SITKSVDGLKPKDLIGLPWRVAFALQQDGWYLRQDIVWNKPNAMPESVRDRPTKSHEYIF 172

Query: 154 WASPSPKAKGYTFNYDA----------------------------------LKAANEDVQ 179
             S SP    Y +++++                                           
Sbjct: 173 LLSKSP---KYYYDHESIKEPAVYGQQDVRGSEGAFGPPQRAKRTSKEKGSFNGKYGHEA 229

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
            R+            +  K  ++ H    PEAL+   +++      I++DPFFGSGT G 
Sbjct: 230 FRAIRDKRNKRSVWTVATKPLKEAHFATFPEALIEPCILAGAPAEGIVMDPFFGSGTVGR 289

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           VA K  R+FIGIE+   YI+I+ + +++VQ
Sbjct: 290 VAAKHNRNFIGIELNPGYIEISDRLLSNVQ 319


>gi|308123713|gb|ADO14694.1| M.OkrAI [Oceanobacter kriegii]
          Length = 407

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 65/272 (23%), Positives = 114/272 (41%), Gaps = 42/272 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+ +G+  S+L+ + + SVDLIF+DPP+NL    ++Y  D           D     + Y
Sbjct: 114 KLYRGDCYSLLKSMESDSVDLIFSDPPFNLD---KIYPSD----------MDDNIKVDKY 160

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +++ W+  C RVLKP G L++         +G+ +  L     N I       +P   
Sbjct: 161 IGWSQEWIKECARVLKPGGALFMWNLPKWNVALGSFVDGL-LTFRNWIGVDIKYSLPI-- 217

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW----------------- 184
             R   +H +L++     K   +  +  A+    +      D+                 
Sbjct: 218 RNRLYPSHYSLMYYIKGEKPNSFHPDRLAMDVCPKCYGDLKDYGGYKDKMNPLGINLSDV 277

Query: 185 --LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
              IP    ++  R K   +L        LL RI+  ++  GD++ DPF GSGT+   A+
Sbjct: 278 WYDIPPVRHAKYKRRKGSNEL-----SLKLLDRIIEMASDEGDLVFDPFGGSGTTYMAAE 332

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
              R ++G E+     DI  +R + ++   +I
Sbjct: 333 LKGRRWVGCELGPT--DIIKERFSLIEEERDI 362


>gi|284115629|ref|ZP_06386690.1| adenine-specific DNA methylase [Candidatus Poribacteria sp. WGA-A3]
 gi|283829559|gb|EFC33907.1| adenine-specific DNA methylase [Candidatus Poribacteria sp. WGA-A3]
          Length = 497

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 69/319 (21%), Positives = 115/319 (36%), Gaps = 76/319 (23%)

Query: 20  KDKIIKGNSISVLEKLPA-KSVDLIFADPPYNLQ------LNGQLYRPDHSLVDAVTDSW 72
           K+++  G+ ++V+       SVDLI+ DPP+N           +  RP    +DA  D W
Sbjct: 15  KNRLYYGDCLTVMRDFMKLGSVDLIYLDPPFNSNRSYNAIYKDETGRPLPDQLDAFCDLW 74

Query: 73  -----------------------DKFSSFE---------------AYDAFTRAWLLACRR 94
                                  D+   F                AY ++    LL  + 
Sbjct: 75  ELTPERNEALRRMPVLMREQGIDDQVVEFWRLWMNALRGTQPRLLAYMSYMVERLLYMKT 134

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
           +LKP G+L++         I  M+  +            S       GR++Q  H+ +++
Sbjct: 135 ILKPTGSLYLHCDPTASHYIKVMMDAIFGHQNFRNEIIWSYRRWPSPGRKYQTMHDVILF 194

Query: 155 ASPSPKAKGY-------------------------TFNYDALKAANEDVQMRSDWLIPIC 189
            +       +                                    + +  R  W + I 
Sbjct: 195 YAMGEHNTFHVGYEPVSESYAKRFKGKTQILDPETKTRKLTKDEPTKGLPQRDVWELSIL 254

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           +GS R         + TQKP  LL RI+ +S+ PGD+I DPF G GT+   A  L R +I
Sbjct: 255 AGSSR-----ERLGYATQKPLTLLERIIQTSSNPGDVIFDPFCGCGTTLEAAHTLNRRWI 309

Query: 250 GIEMKQDYID-IATKRIAS 267
           GI++    +  +A +R+  
Sbjct: 310 GIDIAIHAVKRVARRRLEE 328


>gi|253571032|ref|ZP_04848440.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251839981|gb|EES68064.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|313157076|gb|EFR56506.1| DNA (cytosine-5-)-methyltransferase [Alistipes sp. HGB5]
          Length = 261

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 63/266 (23%), Positives = 97/266 (36%), Gaps = 40/266 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I   + I  ++ +   SVD + AD PY +     L R + +        WD+    E 
Sbjct: 5   DNIYNMDCIEGMKLMANGSVDAVIADLPYGV-----LNRSNKAA------HWDRQIPLE- 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A     RR+ KP   + +      IF    ML     W  N +  +        
Sbjct: 53  ------ALWKQYRRITKPGSPVILFA--QGIFSAQLMLSQPRMWRYNLVWRKDRVTGHLN 104

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL----- 195
             R     HE +I                  +  N   + ++D     C G  +L     
Sbjct: 105 ANRMPLRQHEDIIVFYDRQPVYHPQMTPCPPERRNHGRR-KTDGFTNRCYGEMKLAPVRV 163

Query: 196 --------------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                          +K G   HPTQKP AL+  ++ + T  GD++LD   GSGT+   A
Sbjct: 164 AEDKYPTSVISIPKEHKTGAFYHPTQKPVALIEYLIRTYTNEGDVVLDNCIGSGTTAIAA 223

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIAS 267
            +  R +IG E++  Y +I  +RI  
Sbjct: 224 IRTGRHYIGFEIEPTYCEIVGRRIRE 249


>gi|85715691|ref|ZP_01046670.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
           Nb-311A]
 gi|85697344|gb|EAQ35223.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
           Nb-311A]
          Length = 443

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 58/247 (23%), Positives = 100/247 (40%), Gaps = 13/247 (5%)

Query: 21  DKIIKGNS---ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            ++I G++      +  L  K  DL+  DPPYN+ + G +             +  + S 
Sbjct: 170 HRLICGDAQNEADYVRVLAGKPADLVLTDPPYNVPIKGHVCGLGKIQHAEFAMASGEMSE 229

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E +  F   +L   +   K    L+V   + ++F +    +  N  + N IVW K N  
Sbjct: 230 SE-FKRFLATFLAHAKAHSKAAAILFVFMDWRHLFELTVAGRENNLELKNLIVWAKDNAG 288

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
               G  +++ HE          +   TF     +         + W     + + R   
Sbjct: 289 ---MGSFYRSKHELCFVFKNGEGSHVNTF-----ELGQHGRYRTNVWEYAGVN-TFRAGR 339

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
                +HPT KP A+++  +   TK G ++LDPF GSGT+   A+K  R+   IE    +
Sbjct: 340 SGDLAMHPTVKPTAMIADAIRDVTKRGAVVLDPFAGSGTTLIAAEKTGRAACAIEYDPRF 399

Query: 258 IDIATKR 264
            D+  +R
Sbjct: 400 CDVIIRR 406


>gi|308061616|gb|ADO03504.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter pylori
           Cuz20]
          Length = 252

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 95/254 (37%), Gaps = 27/254 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+ +SVLE       DL    PPYNL +  Q                + F +++ Y 
Sbjct: 12  LYHGD-VSVLETFEKGFYDLCVTSPPYNLSVEYQGS--------------NDFRAYDDYL 56

Query: 83  AFTRAWLLACRRVLKPNGTLW--------VIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            + + WL  C    K    L           G       I  + +   +   N I+W +S
Sbjct: 57  NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNES 116

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N         +  A       + +P      F  +  K   +   +  +  +   +G   
Sbjct: 117 NISRRTAWGSWLQASAP---YAIAPVELIVIFYKNEYKRQKQTSTISKEEFLLYTNGLWS 173

Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
              +  ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E+
Sbjct: 174 FSGESKKRLKHPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEI 233

Query: 254 KQDYIDIATKRIAS 267
           +++Y +++ KRI  
Sbjct: 234 EKEYCELSKKRILE 247


>gi|237750705|ref|ZP_04581185.1| adenine specific DNA methyltransferase [Helicobacter bilis ATCC
           43879]
 gi|229373795|gb|EEO24186.1| adenine specific DNA methyltransferase [Helicobacter bilis ATCC
           43879]
          Length = 270

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 57/268 (21%), Positives = 101/268 (37%), Gaps = 31/268 (11%)

Query: 13  QNSIFEWKDK-IIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
            N+ F +K+  +     +   +  L   S+DLI   PPYN+ +                +
Sbjct: 6   HNTSFSYKNTTLFNHTCLD--KTILQENSLDLIITSPPYNVGIEY--------------N 49

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI--------GSYHNIFRIGTMLQNLN 122
           S +  +S+E+Y  F++ W+  C    K      +         GS      + T+ + + 
Sbjct: 50  SNEDSNSYESYLEFSQKWIENCYFWAKDGARFCLNIPLDKNKGGSQSVGADLTTLAKQIG 109

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
           +   + I+W + N         + +A    + A        Y     A K   +     S
Sbjct: 110 WKYHSTIIWNEGNISRRTAWGSWLSASAPYVIAPVELILVLYK---GAWKKKYKGESDIS 166

Query: 183 DWLIPICSGSERLRNKDGEKL--HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
                  +      N + +K   HP   P  L  R +   +  GD++ DPF GSGT+   
Sbjct: 167 KEEFMAWTNGLWSFNGESKKRIGHPAPFPRELPKRCIKLFSYVGDVVFDPFCGSGTTMIE 226

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +    R FIGIE+ + Y +++ KR    
Sbjct: 227 SYLNNRQFIGIELDKAYCELSKKRFLET 254


>gi|313145883|ref|ZP_07808076.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides
           fragilis 3_1_12]
 gi|313134650|gb|EFR52010.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides
           fragilis 3_1_12]
          Length = 261

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 60/260 (23%), Positives = 97/260 (37%), Gaps = 38/260 (14%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
            + +  ++++   SVD I AD PY +     L R + S+      +WD+           
Sbjct: 1   MDCMEGMKQIADGSVDAIIADLPYGV-----LNRSNPSV------NWDRQIP-------L 42

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
            A     RR+ KP+  + + G    +F    ML     W  N +  +          R  
Sbjct: 43  AALWEQYRRITKPDSPIILFG--QGLFSAWLMLSQPRLWRYNLVWQKDRVTGHLNAKRMP 100

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS------------------DWLIP 187
              HE ++       A          +  N   +                     D   P
Sbjct: 101 LRQHEDILVFYKKQPAYHPQMTPCPPERRNHGRRKTEGFTNRCYGTMKLSPVRIADDKYP 160

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                    +K G   HPTQKP AL+  ++ + T  GD++LD   GSGT+   A +  R 
Sbjct: 161 TSVIFMPKEHKKGAFYHPTQKPVALMEYLIRTYTDEGDVVLDNCIGSGTTAVAAIRTGRH 220

Query: 248 FIGIEMKQDYIDIATKRIAS 267
           +IG E++Q Y +IA ++I  
Sbjct: 221 YIGFEIEQAYCEIAERQIQE 240


>gi|254197164|ref|ZP_04903587.1| DNA methylase [Burkholderia pseudomallei S13]
 gi|169653906|gb|EDS86599.1| DNA methylase [Burkholderia pseudomallei S13]
          Length = 291

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 61/259 (23%), Positives = 102/259 (39%), Gaps = 32/259 (12%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDA----- 67
           +    D++   +++++   LP  S+D++F DPPY    L  + +   P    +++     
Sbjct: 47  LSPLLDRLHAMDALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSTKYINSDTKTV 106

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
            TD         A+  +  AWL  CRR LKP G L     +  +  +  ++Q     +  
Sbjct: 107 YTDFESDNMDQRAWAFWCHAWLTECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILRG 166

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
             VW K+      R   F    E ++W               A + A  D ++    + P
Sbjct: 167 VAVWDKTPGRTRPRRGGFAQQAEFVVW---------------ASRGAMRDCEVYLPGVFP 211

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                         K H T+KP   ++R +V     G ++ D F GSGT  A A++    
Sbjct: 212 --------CRLPLPKQHVTEKPLD-IAREVVRLVPAGGVVCDLFAGSGTFLAAAREASLH 262

Query: 248 FIGIEMKQDYIDIATKRIA 266
           +IG E    Y  IA  R+ 
Sbjct: 263 WIGCETNAAYHAIALHRLG 281


>gi|167900256|ref|ZP_02487657.1| site-specific DNA methyltransferase [Burkholderia pseudomallei
           7894]
          Length = 240

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 59/264 (22%), Positives = 99/264 (37%), Gaps = 32/264 (12%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDA-----VTDSWDKFSS 77
            +++++   LP  S+D++F DPPY    L  + +   P    +++      TD       
Sbjct: 1   MDALTLARMLPDASIDMVFTDPPYSSGGLHTSARTRPPSAKYINSDTKTVYTDFDSDNMD 60

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
             A+  +  AWL  CRR LKP G L     +  +  +  ++Q     +    VW K+   
Sbjct: 61  QRAWAFWCHAWLSECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILRGVAVWDKTPGR 120

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
              R   F    E ++W                   A+       D  +P          
Sbjct: 121 TRPRRGGFAQQAEFVVW-------------------ASRGAMRDCDVYLPGVFPVRLPLP 161

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K     H T+KP  + +R +V     G ++ D F GSGT  A A++    ++G E    Y
Sbjct: 162 KQ----HVTEKPLDV-AREVVRLVPAGGVVCDLFAGSGTFLAAAREAGLHWVGCETNPAY 216

Query: 258 IDIATKRIASVQPLGNIELTVLTG 281
             IA+ R+ +      I+      
Sbjct: 217 HAIASSRLDAAVNDSPIQAARQPN 240


>gi|134288704|ref|YP_001111190.1| gp40, DNA methylase [Burkholderia phage phiE12-2]
 gi|134132089|gb|ABO60764.1| gp40, DNA methylase [Burkholderia phage phiE12-2]
          Length = 291

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 61/259 (23%), Positives = 102/259 (39%), Gaps = 32/259 (12%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDA----- 67
           +    D++   +++++   LP  S+D++F DPPY    L  + +   P    +++     
Sbjct: 47  LSPLLDRLHAMDALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSTKYINSDTKTV 106

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
            TD         A+  +  AWL  CRR LKP G L     +  +  +  ++Q     +  
Sbjct: 107 YTDFESDNMDQRAWAFWCHAWLTECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILRG 166

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
             VW K+      R   F    E ++W               A + A  D ++    + P
Sbjct: 167 VAVWDKTPGRTRPRRGGFAQQAEFVVW---------------ASRGAMRDCEVYLPGVFP 211

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                         K H T+KP   ++R +V     G ++ D F GSGT  A A++    
Sbjct: 212 --------CRLPLPKQHVTEKPLD-IAREVVRLVPAGGVVCDLFAGSGTFLAAAREASLH 262

Query: 248 FIGIEMKQDYIDIATKRIA 266
           +IG E    Y  IA  R+ 
Sbjct: 263 WIGCETNAAYHAIALHRLG 281


>gi|83716835|ref|YP_439534.1| site-specific DNA-methyltransferase [Burkholderia thailandensis
           E264]
 gi|134288786|ref|YP_001111068.1| gp37, DNA methylase [Burkholderia phage phiE202]
 gi|83650660|gb|ABC34724.1| site-specific DNA-methyltransferase XF2313 [Burkholderia
           thailandensis E264]
 gi|134131999|gb|ABO60747.1| gp37, DNA methylase [Burkholderia phage phiE202]
          Length = 258

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 61/259 (23%), Positives = 102/259 (39%), Gaps = 32/259 (12%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDA----- 67
           +    D++   +++++   LP  S+D++F DPPY    L  + +   P    +++     
Sbjct: 14  LSPLLDRLHAMDALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSTKYINSDTKTV 73

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
            TD         A+  +  AWL  CRR LKP G L     +  +  +  ++Q     +  
Sbjct: 74  YTDFESDNMDQRAWAFWCHAWLTECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILRG 133

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
             VW K+      R   F    E ++W               A + A  D ++    + P
Sbjct: 134 VAVWDKTPGRTRPRRGGFAQQAEFVVW---------------ASRGAMRDCEVYLPGVFP 178

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                         K H T+KP   ++R +V     G ++ D F GSGT  A A++    
Sbjct: 179 --------CRLPLPKQHVTEKPLD-IAREVVRLVPAGGVVCDLFAGSGTFLAAAREASLH 229

Query: 248 FIGIEMKQDYIDIATKRIA 266
           +IG E    Y  IA  R+ 
Sbjct: 230 WIGCETNAAYHAIALHRLG 248


>gi|210134461|ref|YP_002300900.1| type II R-M system methyltransferase [Helicobacter pylori P12]
 gi|210132429|gb|ACJ07420.1| type II R-M system methyltransferase [Helicobacter pylori P12]
          Length = 252

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 94/254 (37%), Gaps = 27/254 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G++ SVLE       DL    PPYNL +  Q                + F +++ Y 
Sbjct: 12  LYHGDA-SVLETFEKGFYDLCVTSPPYNLSIEYQGS--------------NDFRAYDDYL 56

Query: 83  AFTRAWLLACRRVLKPNGTLW--------VIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            + + WL  C    K    L           G       I  + +   +   N I+W +S
Sbjct: 57  NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAVAKECGWKYQNTIIWNES 116

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N         +  A       + +P      F  +  K   +   +  +  +   +G   
Sbjct: 117 NISRRTAWGSWLQASTP---YAIAPVELIVVFYKNEYKRQKQTSTISKEEFLLYTNGLWS 173

Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
              +  + L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E+
Sbjct: 174 FSGESKKCLKHPAPFPRELPRRCIQLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEI 233

Query: 254 KQDYIDIATKRIAS 267
           +++Y +++ KRI  
Sbjct: 234 EKEYCELSKKRILE 247


>gi|167630967|ref|YP_001681466.1| DNA methylase [Heliobacterium modesticaldum Ice1]
 gi|167593707|gb|ABZ85455.1| DNA methylase [Heliobacterium modesticaldum Ice1]
          Length = 410

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 46/270 (17%), Positives = 101/270 (37%), Gaps = 37/270 (13%)

Query: 20  KDKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G+S        L      +L+  DPPYN+   G+  +  +          D  +
Sbjct: 167 RHRLVCGDSTKPETFSLLMDGKLANLVVTDPPYNVNYEGKAGKIKN----------DNMA 216

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             + Y  F         + +    ++++  +            +  F++    +W+K + 
Sbjct: 217 DDKFY-RFLLDAFTLTEKAMAKEASIYIFHADTEGLNFRRAFSDAGFYLSGTCIWKKQSL 275

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +       +Q  HE +++                  A   D +  + W       +    
Sbjct: 276 V--LGRSPYQWQHEPILFGWKKAGK----------HAWYSDRKQSTVWEFDKPKKN---- 319

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                  HPT KP  L++  +++S+  G I+LDPF GSG++    ++  R    +E+ + 
Sbjct: 320 -----ADHPTMKPVPLIAYPILNSSMTGCIVLDPFGGSGSTLIACEQTDRICHTVELDEK 374

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEP 286
           + D+  KR   ++  G   + ++ G    P
Sbjct: 375 FCDVIVKRY--IEQAGTDNVILIRGGAKIP 402


>gi|225375789|ref|ZP_03753010.1| hypothetical protein ROSEINA2194_01421 [Roseburia inulinivorans DSM
           16841]
 gi|225212386|gb|EEG94740.1| hypothetical protein ROSEINA2194_01421 [Roseburia inulinivorans DSM
           16841]
          Length = 270

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 59/281 (20%), Positives = 101/281 (35%), Gaps = 39/281 (13%)

Query: 1   MSQKNSLAINEN------QNSIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
           M   N L++ E            E ++ KI+ G+++ +++       D +  DPPY    
Sbjct: 2   MPMTNGLSLEELMKEGTYPEEYTEGENWKILHGDTLKLVKAFQPGIFDAVITDPPYASGG 61

Query: 54  NGQLYRP--------DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI 105
             Q  R           S  +A+ D         ++  +   WL   R+  K    + + 
Sbjct: 62  TKQNERNRTTNQKYSSMSAANALPDFDGDNKDQRSWTHWMAEWLYDVRKACKKGAPICLF 121

Query: 106 GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
             +     I   LQ   +      VW K N  P     RF+   E ++W S  P      
Sbjct: 122 IDWRQYPSITDALQWAGWIWRGTAVWDKGNSRPQ--KGRFRQQAEYIVWGSNGPM----- 174

Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
                            +  +    G  R  N    ++H T+KP  L+  ++    +P  
Sbjct: 175 ---------------PINRPVSCLPGVFRYGNPQ-NRIHVTEKPLQLMKDVIQI-CEPRG 217

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           +ILDPF G+GT+   A       +GIE+   Y  + + R+ 
Sbjct: 218 LILDPFVGAGTTVLAAVMTGYRAVGIEVTDAYYKLGSDRVK 258


>gi|329114332|ref|ZP_08243094.1| Modification methylase MjaV [Acetobacter pomorum DM001]
 gi|326696408|gb|EGE48087.1| Modification methylase MjaV [Acetobacter pomorum DM001]
          Length = 285

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 63/270 (23%), Positives = 112/270 (41%), Gaps = 43/270 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I+ G+ +  L+++PA+SVD++   PPYN+ L+ + Y                    E Y
Sbjct: 31  EIVMGDCLRALKRVPAESVDVVVTSPPYNIGLSYRSYP--------------DRREEEDY 76

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGS-----YHNIFRIGTMLQNLNFWILNDIVW----- 131
             +        +R+LK +G+ ++  S         F +   L++L F + N I W     
Sbjct: 77  LDWMLEVAQQLQRILKDDGSFFLNISGSSAQPWLPFELAVRLRDL-FVLQNHISWVKSIS 135

Query: 132 ----RKSNPMPNFRGRRFQNAHETLIWASPSPKAK--------GYTFN-YDALKAANEDV 178
                  +  P    R     HE +   +     +         Y      A +   +D 
Sbjct: 136 VGEDSFGHFKPMNSQRFLHRGHEHVFHFTLHGDVRLDRLRAGVPYKDKSNIARRGHRQDR 195

Query: 179 QMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           + R D W IP     E +R +  +  HP   P AL  + ++   + G  +LDPF G+GT+
Sbjct: 196 RCRGDTWFIPY----ETVRGRAEKFDHPGTFPVALPEQCILLHGREGARVLDPFMGTGTT 251

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
              A++L    +G+E+  +Y+ IA  R+  
Sbjct: 252 LLAAQRLGCYGLGMELDPEYVAIARARLKD 281


>gi|127480|sp|P14751|MTR1_RHOSH RecName: Full=Modification methylase RsrI; Short=M.RsrI; AltName:
           Full=Adenine-specific methyltransferase RsrI
 gi|11514446|pdb|1EG2|A Chain A, Crystal Structure Of Rhodobacter Spheroides (N6 Adenosine)
           Methyltransferase (M.Rsri)
 gi|34810984|pdb|1NW5|A Chain A, Structure Of The Beta Class N6-Adenine Dna
           Methyltransferase Rsri Bound To S-Adenosylmethionine
 gi|34810985|pdb|1NW6|A Chain A, Structure Of The Beta Class N6-Adenine Dna
           Methyltransferase Rsri Bound To Sinefungin
 gi|34810986|pdb|1NW7|A Chain A, Structure Of The Beta Class N6-Adenine Dna
           Methyltransferase Rsri Bound To
           S-Adenosyl-L-Homocysteine
 gi|46455|emb|CAA34475.1| unnamed protein product [Rhodobacter sphaeroides]
          Length = 319

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 76/295 (25%), Positives = 113/295 (38%), Gaps = 49/295 (16%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           + +  L KLP  SV LI  DPPYN+ L                  WD       Y  + +
Sbjct: 46  DCLDTLAKLPDDSVQLIICDPPYNIMLA----------------DWDDHMD---YIGWAK 86

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFR---------IGTMLQNLNFWILNDIVWRKSNPM 137
            WL    RVL P G++ + G                I  M QN    + N I+W   N M
Sbjct: 87  RWLAEAERVLSPTGSIAIFGGLQYQGEAGSGDLISIISHMRQNSKMLLANLIIWNYPNGM 146

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFN---------------YDALKAANEDVQMRS 182
                R F N HE + W +     K Y F+               Y   K  N +   + 
Sbjct: 147 --SAQRFFANRHEEIAWFAK---TKKYFFDLDAVREPYDEETKAAYMKDKRLNPESVEKG 201

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
                +   S    N      HPTQKP A++ R++ + + PG  +LD F GSG +  VA 
Sbjct: 202 RNPTNVWRMSRLNGNSLERVGHPTQKPAAVIERLVRALSHPGSTVLDFFAGSGVTARVAI 261

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERG 297
           +  R+ I  +    + +   K++  +Q  G I+    + +  E    F   ++RG
Sbjct: 262 QEGRNSICTDAAPVFKEYYQKQLTFLQDDGLIDK-ARSYEIVEGAANFGAALQRG 315


>gi|317181606|dbj|BAJ59390.1| adenine specific DNA methyltransferase [Helicobacter pylori F57]
          Length = 252

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 94/254 (37%), Gaps = 27/254 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+ +SVLE       DL    PPYNL +  Q                + F +++ Y 
Sbjct: 12  LYHGD-VSVLETFEKGFYDLCITSPPYNLSIEYQGS--------------NDFRAYDDYL 56

Query: 83  AFTRAWLLACRRVLKPNGTLW--------VIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            + + WL  C    K    L           G       I  + +   +   N I+W +S
Sbjct: 57  NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNES 116

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N         +  A       + +P      F  +  K   +   +  +  +   +G   
Sbjct: 117 NISRRTAWGSWLQASAP---YAIAPVELIVVFYKNEYKRQKQTSTISKEEFLLYTNGLWS 173

Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
              +  ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E+
Sbjct: 174 FSGESKKRLKHPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEI 233

Query: 254 KQDYIDIATKRIAS 267
           +++Y  ++ KRI  
Sbjct: 234 EKEYCKLSKKRILE 247


>gi|163839947|ref|YP_001624352.1| adenine specific DNA methylase [Renibacterium salmoninarum ATCC
           33209]
 gi|162953423|gb|ABY22938.1| adenine specific DNA methylase [Renibacterium salmoninarum ATCC
           33209]
          Length = 285

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 68/279 (24%), Positives = 117/279 (41%), Gaps = 42/279 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ----------------LYRPDHSL 64
           + +++  + S L  LP  +  LI+ DPP+N     +                    ++  
Sbjct: 12  NLVVEAENSSYLSTLPDGAFSLIYLDPPFNTGRTQKRQSTTMVRSQSGSRLGFCGQNYET 71

Query: 65  VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--N 122
           V      +D   +F  Y AF    L+   R+L  +GTL++   Y  +     ML  +   
Sbjct: 72  VKGALHHYDD--AFTDYWAFLEPRLVEAWRLLSEDGTLYLHLDYREVHYAKVMLDAIFGR 129

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ--- 179
              LN+I+W           +R+   H+ ++    +P    Y F+  A+           
Sbjct: 130 ESFLNEIIWAYDFGA--RANKRWPTKHDNILVYVKNP--NKYHFDNAAVDREPYMAPGLV 185

Query: 180 ----------MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
                         W   I S + +      +  +PTQKP  LL R++ +S++PGD +LD
Sbjct: 186 TAAKVALGKLPTDVWWHTIVSPTGK-----EKTGYPTQKPVGLLRRVVAASSRPGDWVLD 240

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            F GSGT GAV+  L R F+ ++     I+I T+R+++V
Sbjct: 241 FFAGSGTIGAVSVALDRRFVCVDQNPAAIEIMTQRLSNV 279


>gi|256367688|ref|YP_003108257.1| YcgA [Escherichia coli]
 gi|5103178|dbj|BAA78814.1| ycgA [Plasmid R100]
 gi|38606088|gb|AAR25052.1| YcgA [Escherichia coli]
 gi|228480625|gb|ACQ41953.1| YcgA [Escherichia coli]
          Length = 215

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 97/244 (39%), Gaps = 53/244 (21%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           +   P  +VD I  DPPY +       R   ++    TD W + +  E Y          
Sbjct: 1   MATFPGNAVDFILTDPPYLVGFRD---RSGRTIAGDKTDEWLQPACNEMY---------- 47

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNFRGRRFQNAH- 149
             RVLK +  +     ++ + R     +N  F ++  +V+ K+      + G R + A+ 
Sbjct: 48  --RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAYVGYRHECAYI 105

Query: 150 ----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
                  +  +P P   G+ +                                 G + HP
Sbjct: 106 LAKGRPRLPQNPLPDVLGWKY--------------------------------SGNRHHP 133

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ + Y     +R+
Sbjct: 134 TEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRL 193

Query: 266 ASVQ 269
           A+VQ
Sbjct: 194 AAVQ 197


>gi|325263278|ref|ZP_08130013.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. D5]
 gi|324031671|gb|EGB92951.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. D5]
          Length = 319

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 67/332 (20%), Positives = 111/332 (33%), Gaps = 99/332 (29%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKF 75
            D II  +++  L +LP +SV      PPY    +  L+ Q+ R D              
Sbjct: 6   TDTIINRDALYALRELPEESVHCCVTSPPYYALRDYGLDAQIGRED-------------- 51

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI------------------------ 111
            + E Y           RRVL+ +GT W+  +                            
Sbjct: 52  -TPEQYIDRLTEVFRELRRVLRSDGTFWLNIADTYCGTGNKGYHADPKNPKGRNGQAVSI 110

Query: 112 ----------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
                           + +   L+   +++ +DI+W+K NPMP     R    +E +   
Sbjct: 111 ARQAAGCKQKDLIGIPWLLAFALRADGWYLRSDIIWQKENPMPESVKDRPTRCYEHIFLL 170

Query: 156 SPSPKAKGYTFNYDALKAA----------------------------------NEDVQMR 181
           +    +K Y ++  A+                                            
Sbjct: 171 TK---SKKYFYDAAAIAEPLAPTTAARYRTGRSAGQKYADEIPGQGKVQGLNRARSGSYY 227

Query: 182 SDWLIPICSGSERLR---NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
            + L+P       +        +  H    P  L    + +    G ++LDPFFGSGT+G
Sbjct: 228 DEALMPTMRNRRDVWLINTVPYKGGHFAAFPPKLAETCIKAGCPKGGVVLDPFFGSGTTG 287

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
           A AK+L R +IGIE+  +Y  +A  RI   + 
Sbjct: 288 AAAKQLHRHYIGIEINAEYCALARARIGGTEK 319


>gi|147677091|ref|YP_001211306.1| DNA modification methylase [Pelotomaculum thermopropionicum SI]
 gi|146273188|dbj|BAF58937.1| DNA modification methylase [Pelotomaculum thermopropionicum SI]
          Length = 315

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 62/282 (21%), Positives = 109/282 (38%), Gaps = 44/282 (15%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           + ++  +   ENQ    ++ D I+       +E+LP  SV L+   PPYN   +      
Sbjct: 51  LPKEKKMPYVENQVP-EKFLDNILCKTC-ENMEELPDSSVHLMVTSPPYNAGKD------ 102

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW----VIGSYHNIFR--- 113
                      +DK  +   Y  F +       RVL P G        +G    I     
Sbjct: 103 -----------YDKNLTLSQYRDFLKRVWKEVYRVLVPGGRACINVANLGRKPYIPIHTC 151

Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRR---------FQNAHETLIWASPSPKAKGY 164
           I   +Q+L F +  +I+W K++                   ++ HE ++  S     +  
Sbjct: 152 ITEDMQDLGFLMRGEIIWNKASSASPSTAWGSWLSAANPTLRDVHEYILVFSKDAFTRKN 211

Query: 165 TFNYDALKAANED-VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKP 223
            +  ++     +     +S W  P          +  +  HP   P  L  R++   T  
Sbjct: 212 PYCRESTITKEQFLEYTKSVWTFPA--------EQAKKIGHPAPFPVELPYRLIQLYTFK 263

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           G+++LDPF GSG +   A K  R ++G E+  +Y+ +A +RI
Sbjct: 264 GEVVLDPFLGSGQTAIAALKAGRRYVGYEIDGNYVGLAKRRI 305


>gi|315576665|gb|EFU88856.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0630]
          Length = 398

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 104/251 (41%), Gaps = 32/251 (12%)

Query: 20  KDKIIKGNS---ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G+S   + V + +  K  DL+  DPPYN+   G+         +A+T   D   
Sbjct: 157 RHRLMCGDSTNSLEVEKLMGNKKADLLITDPPYNVAYEGKG-------KEALTIKNDSKE 209

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           + E + +F      A    +K   + +V  +   +    T L+   F +  +++W K++ 
Sbjct: 210 TNE-FHSFLYEAFSAAINNMKLGSSFYVWYASSEVVNFHTALEEAGFLVKQELIWNKNSM 268

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           + + +   ++  HE  ++   S  +  +  +       N D                   
Sbjct: 269 VLSRQDYHWK--HEPCLYGWASGGSHSWYSDRKQTTILNFDRPTV--------------- 311

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                K HPT KP AL    + +S+K GD ILD F GSGT+    ++  R    +E+   
Sbjct: 312 ----NKEHPTMKPVALFDYQIKNSSKQGDCILDLFGGSGTTLIACEQNEREAYLMELDPR 367

Query: 257 YIDIATKRIAS 267
           Y+D+   R  +
Sbjct: 368 YVDVIIARWEA 378


>gi|326782796|ref|YP_004323194.1| DNA adenine methylase [Prochlorococcus phage P-RSM4]
 gi|310004055|gb|ADO98449.1| DNA adenine methylase [Prochlorococcus phage P-RSM4]
          Length = 317

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 67/315 (21%), Positives = 115/315 (36%), Gaps = 80/315 (25%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           KD I+ G+  + +  +  + V +    PPY      + Y  + S +        +  + E
Sbjct: 7   KDTILYGDCRNTIPTIH-ERVQMCVTSPPY---YGLRDYGGESSQIG-------QEQTPE 55

Query: 80  AYDAFTRAWLLACRRVLKPNGTLW-VIGSYHNIFR------------------------- 113
            Y           + VL  +GTLW  IG  +  +R                         
Sbjct: 56  EYIEELVKVFREVKNVLADDGTLWLNIGDSYYNYRPGKGQSYPKQTVSKTKQDLPDKCNK 115

Query: 114 -------------------IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
                              +   L+   +++  DI+W K NPMP     R   AHE +  
Sbjct: 116 RGNKLEGLKEKDLIGIPWLLAFALRKDGWYLRQDIIWHKPNPMPESVKDRCTKAHEYIFL 175

Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG---------------------SE 193
            S +   K Y ++ +A+K   +D   R        +                        
Sbjct: 176 FSKN---KKYYYDNEAIKEPAKDWGTRDRTKGKYHNKGTGLSPHTGLNKSYPTKNKRSVW 232

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
            + NK  +  H    P  L+   +++ +K GD+ILDPF GSGT+  V+K+L R +IG E+
Sbjct: 233 SVTNKPYKGTHFAVFPPDLIEPCILAGSKKGDLILDPFMGSGTTAMVSKQLDRHYIGCEL 292

Query: 254 KQDYIDIATKRIASV 268
            ++Y  +   R+ + 
Sbjct: 293 HEEYKSLIDSRLPNT 307


>gi|29376623|ref|NP_815777.1| adenine methyltransferase, putative [Enterococcus faecalis V583]
 gi|307276047|ref|ZP_07557180.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX2134]
 gi|29344087|gb|AAO81847.1| adenine methyltransferase, putative [Enterococcus faecalis V583]
 gi|306507377|gb|EFM76514.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX2134]
 gi|315575105|gb|EFU87296.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0309B]
 gi|315582532|gb|EFU94723.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0309A]
          Length = 400

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 104/251 (41%), Gaps = 32/251 (12%)

Query: 20  KDKIIKGNS---ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G+S   + V + +  K  DL+  DPPYN+   G+         +A+T   D   
Sbjct: 159 RHRLMCGDSTNSLEVEKLMGNKKADLLITDPPYNVAYEGKG-------KEALTIKNDSKE 211

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           + E + +F      A    +K   + +V  +   +    T L+   F +  +++W K++ 
Sbjct: 212 TNE-FHSFLYEAFSAAINNMKLGSSFYVWYASSEVVNFHTALEEAGFLVKQELIWNKNSM 270

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           + + +   ++  HE  ++   S  +  +  +       N D                   
Sbjct: 271 VLSRQDYHWK--HEPCLYGWASGGSHSWYSDRKQTTILNFDRPTV--------------- 313

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                K HPT KP AL    + +S+K GD ILD F GSGT+    ++  R    +E+   
Sbjct: 314 ----NKEHPTMKPVALFDYQIKNSSKQGDCILDLFGGSGTTLIACEQNEREAYLMELDPR 369

Query: 257 YIDIATKRIAS 267
           Y+D+   R  +
Sbjct: 370 YVDVIIARWEA 380


>gi|38564764|gb|AAR23811.1| NheIM [Neisseria mucosa subsp. heidelbergiensis]
          Length = 293

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 116/292 (39%), Gaps = 57/292 (19%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II  +++S L+KL   S+ L    PPY    N + Y    S +        K SS   Y 
Sbjct: 6   IINDDAVSGLKKLEDSSIQLTITSPPY---YNLRNYACGESEIG-------KESSINEYI 55

Query: 83  AFTRAWLLACRRVLKPNGTLW-VIGSYHNI-------FRIGTMLQNLNFWILNDIVWRKS 134
              +       +  K +G L+  +G  +         +R+   L+ L + + +DI+W K 
Sbjct: 56  NKLQDVFEILFKKTKSDGLLFLNLGDSYINGELAGIPWRVALSLKELGWILRSDIIWHKP 115

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA-------------------- 174
           N MP+    R    HE +   +    +K Y +N D+++                      
Sbjct: 116 NAMPSSVKNRPTVDHEYIFMFAK---SKQYKYNQDSIREPHVTFSELSKMRGGRSHFGKR 172

Query: 175 --------NEDVQMRSD--W---LIPICSGSERLRNKDGEKL---HPTQKPEALLSRILV 218
                   NE  +   D  W     P       + +    K    H    PE L+   + 
Sbjct: 173 EGTPEKGKNEGNKNLHDGRWDQAFHPQGRNKRTVWSISLGKFRGTHFAVFPEKLVEVCVK 232

Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
           + + P D+I DPF GS T+G VA +L R FIGIE+ ++Y  +A  R+ S  P
Sbjct: 233 AGSDPNDLICDPFSGSATTGVVAIRLNRRFIGIELSENYCQLAEDRLKSEVP 284


>gi|332673104|gb|AEE69921.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori 83]
          Length = 252

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 95/254 (37%), Gaps = 27/254 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+ +SVLE       DL    PPYNL +  Q                + F +++ Y 
Sbjct: 12  LYHGD-VSVLETFEKGFYDLCITSPPYNLSIEYQGS--------------NDFRAYDDYL 56

Query: 83  AFTRAWLLACRRVLKPNGTLW--------VIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            + + WL  C    K    L           G       +  + +   +   N I+W +S
Sbjct: 57  NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADMIAIAKECGWKYQNTIIWNES 116

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N         +  A       + +P      F  +  K   +   +  +  +   +G   
Sbjct: 117 NISRRTAWGSWLQASAP---YAIAPVELIVVFYKNEYKRQKQTSTISKEEFLLYTNGLWS 173

Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
              +  ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E+
Sbjct: 174 FSGESKKRLKHPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEI 233

Query: 254 KQDYIDIATKRIAS 267
           +++Y +++ KRI  
Sbjct: 234 EKEYCELSKKRILE 247


>gi|83648327|ref|YP_436762.1| DNA modification methylase [Hahella chejuensis KCTC 2396]
 gi|83636370|gb|ABC32337.1| DNA modification methylase [Hahella chejuensis KCTC 2396]
          Length = 405

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 54/253 (21%), Positives = 95/253 (37%), Gaps = 41/253 (16%)

Query: 21  DKIIKGNSISVLEKLPAKSV---------DLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
            +++ G++      LP             D++F DPPYN+               A+ + 
Sbjct: 159 HRVLCGDA-----TLPDAYAALFSDGKLADMVFTDPPYNVNYANSAKDKLRGKNRAILND 213

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
                 ++   A     L  CR      G +++  S   +  +    +         I+W
Sbjct: 214 NLGDGFYDFLLAALSPTLAHCR------GAIYIAMSSSELDTLQAAFREAGGKWSTFIIW 267

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
            K+           Q  +E +++  P    + +            D      W I   + 
Sbjct: 268 AKNTFTLGRSDY--QRQYEPILYGWPEGARRHWC----------GDRDQGDVWQIKKPAK 315

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           ++         LHPT KP  L+ R + +S++PGD +LDPF GSGT+   A+K  R    I
Sbjct: 316 ND---------LHPTMKPVELVERAIRNSSRPGDRVLDPFGGSGTTLIAAEKSGRVARLI 366

Query: 252 EMKQDYIDIATKR 264
           E+   Y+D+  +R
Sbjct: 367 ELDPKYVDVIVRR 379


>gi|309781002|ref|ZP_07675741.1| prophage LambdaMc01, DNA methyltransferase [Ralstonia sp.
           5_7_47FAA]
 gi|330824601|ref|YP_004387904.1| DNA methylase N-4/N-6 domain-containing protein [Alicycliphilus
           denitrificans K601]
 gi|308920305|gb|EFP65963.1| prophage LambdaMc01, DNA methyltransferase [Ralstonia sp.
           5_7_47FAA]
 gi|329309973|gb|AEB84388.1| DNA methylase N-4/N-6 domain protein [Alicycliphilus denitrificans
           K601]
          Length = 420

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 98/251 (39%), Gaps = 30/251 (11%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G+S    S    +     D++F DPPYN+               A+ +      
Sbjct: 170 QHRLLCGDSTVAESYDHLMQGAVADMVFTDPPYNVNYANSAKDKMRGKDRAILNDNLG-- 227

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             +A+  F  A L     V    G ++V  S   +  +    +         I+W K+  
Sbjct: 228 --DAFYDFLLAALTP--TVAHCRGGIYVAMSSSELDVLQAAFRAAGGKWSTFIIWAKNTF 283

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
                    Q  +E +++  P    + +  + D     N     ++D             
Sbjct: 284 TLGRADY--QRQYEPILYGWPEGATRHWCGDRDQGDVWNIKKPQKND------------- 328

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                 LHPT KP  L+ R + +S++PG+++LDPF GSGT+   A+K  R    IE+   
Sbjct: 329 ------LHPTMKPVELVERAIRNSSRPGNVVLDPFGGSGTTLIAAEKSGRVARLIELDPK 382

Query: 257 YIDIATKRIAS 267
           Y+D+  +R   
Sbjct: 383 YVDVIVRRWEE 393


>gi|207091933|ref|ZP_03239720.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 252

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 94/254 (37%), Gaps = 27/254 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+ +SVLE       DL    PPYNL +  Q                D F +++ Y 
Sbjct: 12  LYHGD-VSVLETFEKGFYDLCITSPPYNLSIEYQGS--------------DDFRAYDDYL 56

Query: 83  AFTRAWLLACRRVLKPNGTLW--------VIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            + + WL  C    K    L           G       I  + +   +   N I+W +S
Sbjct: 57  NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNES 116

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N         +  A       + +P      F  +  K   +   +  +  +   +G   
Sbjct: 117 NISRRTAWGSWLQASAP---YAIAPVELIVVFYKNEYKRQKQTSTISKEEFLLYTNGLWS 173

Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
              +  ++L HP   P     R +   +   D I DPF GSGT+   A  L R  +G+E+
Sbjct: 174 FSGESKKRLKHPAPFPRESPKRCIQLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEI 233

Query: 254 KQDYIDIATKRIAS 267
           +++Y +++ KRI  
Sbjct: 234 EKEYCELSKKRILE 247


>gi|34810987|pdb|1NW8|A Chain A, Structure Of L72p Mutant Beta Class N6-Adenine Dna
           Methyltransferase Rsri
          Length = 319

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 113/295 (38%), Gaps = 49/295 (16%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           + +  L KLP  SV LI  DPPYN+                +   WD       Y  + +
Sbjct: 46  DCLDTLAKLPDDSVQLIICDPPYNI----------------MPADWDDHMD---YIGWAK 86

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFR---------IGTMLQNLNFWILNDIVWRKSNPM 137
            WL    RVL P G++ + G                I  M QN    + N I+W   N M
Sbjct: 87  RWLAEAERVLSPTGSIAIFGGLQYQGEAGSGDLISIISHMRQNSKMLLANLIIWNYPNGM 146

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFN---------------YDALKAANEDVQMRS 182
                R F N HE + W +     K Y F+               Y   K  N +   + 
Sbjct: 147 --SAQRFFANRHEEIAWFAK---TKKYFFDLDAVREPYDEETKAAYMKDKRLNPESVEKG 201

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
                +   S    N      HPTQKP A++ R++ + + PG  +LD F GSG +  VA 
Sbjct: 202 RNPTNVWRMSRLNGNSLERVGHPTQKPAAVIERLVRALSHPGSTVLDFFAGSGVTARVAI 261

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERG 297
           +  R+ I  +    + +   K++  +Q  G I+    + +  E    F   ++RG
Sbjct: 262 QEGRNSICTDAAPVFKEYYQKQLTFLQDDGLIDK-ARSYEIVEGAANFGAALQRG 315


>gi|109947114|ref|YP_664342.1| adenine specific DNA methyltransferase [Helicobacter acinonychis
           str. Sheeba]
 gi|109714335|emb|CAJ99343.1| adenine specific DNA methyltransferase [Helicobacter acinonychis
           str. Sheeba]
          Length = 252

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 95/254 (37%), Gaps = 27/254 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G++ SVLE       DL    PPYNL +  Q                + F +++ Y 
Sbjct: 12  LYHGDA-SVLETFEKGFYDLCVTSPPYNLSVEYQGS--------------NDFRAYDDYL 56

Query: 83  AFTRAWLLACRRVLKPNGTLW--------VIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            + + W   C    K    L           G       +  + +   +   N I+W +S
Sbjct: 57  NWCKNWFKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADMTIVAKECGWKYQNTIIWNES 116

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N         +  A       + +P      F  +  K   +   +  +  +   +G   
Sbjct: 117 NISRRTAWGSWLQASAP---YAIAPVELIIVFYKNEYKRQKQTSTISKEEFLLYTNGLWS 173

Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
              +  ++L HP   P  L SR +   +   D I DPF GSGT+   A  L R  +G+E+
Sbjct: 174 FSGESKKRLKHPAPFPRELPSRCIKLFSFLEDTIFDPFSGSGTTLLEANALGRFSVGLEI 233

Query: 254 KQDYIDIATKRIAS 267
           +++Y +++ KRI  
Sbjct: 234 EKEYCELSKKRILE 247


>gi|77412079|ref|ZP_00788405.1| prophage LambdaW4, DNA methylase [Streptococcus agalactiae CJB111]
 gi|77161884|gb|EAO72869.1| prophage LambdaW4, DNA methylase [Streptococcus agalactiae CJB111]
          Length = 418

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 98/251 (39%), Gaps = 35/251 (13%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K ++I G+S    +  + L  K  +LI  DPPYN+ +     +  +          D  S
Sbjct: 171 KHRVICGDSTKSENYEQLLGDKKANLIVTDPPYNVDVEETAGKILN----------DNMS 220

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             + Y  F           ++ + +++V  +           ++  F++    +W+K++ 
Sbjct: 221 DRDFY-QFLFDMFTQVESHMEADASIYVFHANTEGLNFRKAFKDAGFYLSGSCIWKKNSL 279

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +       +Q  HE  ++         +            D +  + W       S    
Sbjct: 280 V--LGRSPYQWQHEPCLFGWKQKGKHQWF----------SDRKQTTIWEYDRPKSS---- 323

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                K HPT KP  L++  + +S+  G ++ DPF GSG++   A +  R   GIE+ + 
Sbjct: 324 -----KDHPTMKPIQLMAYPIQNSSMRGTLVFDPFLGSGSTLMAADQTGRVCYGIELDEK 378

Query: 257 YIDIATKRIAS 267
           ++D+  KR   
Sbjct: 379 FVDVIVKRYME 389


>gi|255975407|ref|ZP_05425993.1| transferase [Enterococcus faecalis T2]
 gi|255968279|gb|EET98901.1| transferase [Enterococcus faecalis T2]
          Length = 400

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 104/251 (41%), Gaps = 32/251 (12%)

Query: 20  KDKIIKGNS---ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G+S   + V + +  K  DL+  DPPYN+   G+         +A+T   D   
Sbjct: 159 RHRLMCGDSTNSLEVEKLMGNKKADLLITDPPYNVAYEGKG-------KEALTIKNDSKE 211

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           + E + +F      A    +K   + +V  +   +    T L+   F +  +++W K++ 
Sbjct: 212 TNE-FHSFLYEAFSAAINNMKLGSSFYVWYASSEVVNFHTALEEAGFLVKQELIWNKNSM 270

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           + + +   ++  HE  ++   S  +  +  +       N D                   
Sbjct: 271 VLSRQDYHWK--HEPCLYGWASGGSHSWYSDRKQTTILNFDRPTV--------------- 313

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                K HPT KP AL    + +S+K GD ILD F GSGT+    ++  R    +E+   
Sbjct: 314 ----NKEHPTMKPVALFDYQIKNSSKQGDCILDLFGGSGTTLIACEQNEREAYLMELDPR 369

Query: 257 YIDIATKRIAS 267
           Y+D+   R  +
Sbjct: 370 YVDVIIARWEA 380


>gi|301029835|ref|ZP_07192876.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 196-1]
 gi|299877318|gb|EFI85529.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 196-1]
          Length = 211

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 99/244 (40%), Gaps = 53/244 (21%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           + ++P  ++D I  DPPY +       R   ++    TD W + +  E Y          
Sbjct: 1   MARIPDNAIDFILTDPPYLVGFRD---RQGRTIAGDKTDEWLQPACNEMY---------- 47

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNFRGRRFQNAH- 149
             RVLK +  +     ++ + R  +  +N  F ++  +V+ K+      + G R + A+ 
Sbjct: 48  --RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNYTSKAAYVGYRHECAYI 105

Query: 150 ----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
                  +  +P P   G+ +                                 G + HP
Sbjct: 106 LAKGRPRLPQNPLPDVLGWKY--------------------------------SGNRHHP 133

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ + Y     +R+
Sbjct: 134 TEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRL 193

Query: 266 ASVQ 269
            +VQ
Sbjct: 194 TAVQ 197


>gi|257090388|ref|ZP_05584749.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|256999200|gb|EEU85720.1| conserved hypothetical protein [Enterococcus faecalis CH188]
          Length = 398

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 104/251 (41%), Gaps = 32/251 (12%)

Query: 20  KDKIIKGNS---ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G+S   + V + +  K  DL+  DPPYN+   G+         +A+T   D   
Sbjct: 157 RHRLMCGDSTNSLEVEKLMGNKKADLLITDPPYNVAYEGKG-------KEALTIKNDSKE 209

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           + E + +F      A    +K   + +V  +   +    T L+   F +  +++W K++ 
Sbjct: 210 TNE-FHSFLYEAFSAAINNMKLGSSFYVWYASSEVVNFHTALEEAGFLVKQELIWNKNSM 268

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           + + +   ++  HE  ++   S  +  +  +       N D                   
Sbjct: 269 VLSRQDYHWK--HEPCLYGWASGGSHSWYSDRKQTTILNFDRPTV--------------- 311

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                K HPT KP AL    + +S+K GD ILD F GSGT+    ++  R    +E+   
Sbjct: 312 ----NKEHPTMKPVALFDYQIKNSSKRGDCILDLFGGSGTTLIACEQNEREAYLMELDPR 367

Query: 257 YIDIATKRIAS 267
           Y+D+   R  +
Sbjct: 368 YVDVIIARWEA 378


>gi|298241762|ref|ZP_06965569.1| DNA methylase N-4/N-6 domain protein [Ktedonobacter racemifer DSM
           44963]
 gi|297554816|gb|EFH88680.1| DNA methylase N-4/N-6 domain protein [Ktedonobacter racemifer DSM
           44963]
          Length = 344

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 124/292 (42%), Gaps = 47/292 (16%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
           N+   W +++I G++  +L  L       V+LI+ DPP+   + G+ +     L  A +D
Sbjct: 40  NNEPGWSNRLIWGDNQDILPALLPLFRDQVNLIYIDPPF---MTGRTFGRKEQL--AYSD 94

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--------N 122
           +W+     +AY  +    L    ++L P G++++   +     +  ML  +         
Sbjct: 95  TWNN--DIDAYLQWLYPILQTLHQLLAPTGSMYLHLDWRTSHYVKVMLDEIFGFNVQGNG 152

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
               N+I+W   +       R +   H+T+++ + S     +       + A +   MR 
Sbjct: 153 PGFKNEIIWHYQSGGQT--RRYYTRKHDTILFYTKSGDYCFHKERIGERRGAQKRNHMRQ 210

Query: 183 D--------WLI------------------PICSGSERLRNKDGEKL-HPTQKPEALLSR 215
                    W I                   + S    L  +D E+  + TQKP ALL R
Sbjct: 211 VVGPDGQISWTIKSAGKLYTYNEDTLIPPSDVWSDISHLHQRDPERTGYATQKPAALLER 270

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           IL++S++  D+++D F GSG +  VA+ L+R +I  +  +  I   ++R+  
Sbjct: 271 ILLASSEEDDLVMDCFCGSGVTPIVAEHLKRRWIACDKSELAITTTSQRLQQ 322


>gi|34762179|ref|ZP_00143186.1| Chromosome partitioning protein parB [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27888140|gb|EAA25199.1| Chromosome partitioning protein parB [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 438

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 55/267 (20%), Positives = 110/267 (41%), Gaps = 26/267 (9%)

Query: 20  KDKIIKGNS--ISVLEKL-PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K K++ G+S  +  ++KL   +++DL+  DPPYN+              +      D  S
Sbjct: 161 KHKLMCGDSTNLEDVKKLVANETMDLMVTDPPYNVNYEAT---------NGNKIKNDNMS 211

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           S E +  F   +      V++     ++  +          L+   F I   ++W K+  
Sbjct: 212 S-ENFYRFLLDFYKNSFEVMRAGAAYYIFHADSETKAFRGALEEAGFKISQCLIWVKNQF 270

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           + + +   ++  HE  ++      A  +  ++       +D++   ++         +  
Sbjct: 271 VLSRQDYNWR--HEPCLYGWKEGAAHYFIKDFTQDTVIEKDLKAIENYSKKELINILKQM 328

Query: 197 NKDGEKL-----------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
            ++ E +           HPT KP  L++R++ +S+K    ILD F GSG++   A++L 
Sbjct: 329 LREQESIIRENKPLVNDVHPTMKPIKLIARLIHNSSKKDWNILDLFGGSGSTLIAAEQLN 388

Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLG 272
           R    +E    Y D+  KR  S+  L 
Sbjct: 389 RKAFLMEYDPKYADVIVKRYRSLGKLD 415


>gi|313618487|gb|EFR90489.1| DNA methylase [Listeria innocua FSL S4-378]
          Length = 411

 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 52/283 (18%), Positives = 103/283 (36%), Gaps = 43/283 (15%)

Query: 20  KDKIIKGNSI-----SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           + ++I G+S       VL  +  K  +L   DPPYN+   G   +  +            
Sbjct: 166 RHRLICGDSTKEETYDVL--MNKKKANLCVTDPPYNVNYEGTAGKIKN-----------D 212

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
               + +  F     +    VL  + +++V  +    F       +  F++    +W+K 
Sbjct: 213 HMGNDVFYQFLLDAFINIEEVLADDASIYVFHADTEGFNFRKAFSDAGFYLSGCCIWKKD 272

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           + +       +Q  HE +++         +            D   R             
Sbjct: 273 SLV--LGRSPYQWQHEPVLFGWKKKGKHQWYTGRKETTIWEFDKPKR------------- 317

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                    HPT KP  LL+  +++S+    I+LDPF GSG++    ++  R     E+ 
Sbjct: 318 ------NGDHPTMKPIPLLAYPILNSSMTNTIVLDPFGGSGSTLIACEQSERICYTAELD 371

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERG 297
           + + D+  KR   ++ +G      ++ +R      ++ LVE  
Sbjct: 372 EKFCDVIIKRY--IEQVG--TSKDVSVQRDGLSYKYDELVETN 410


>gi|326782063|ref|YP_004322464.1| DNA adenine methylase [Prochlorococcus phage P-HM1]
 gi|310004270|gb|ADO98663.1| DNA adenine methylase [Prochlorococcus phage P-HM1]
          Length = 309

 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 72/315 (22%), Positives = 114/315 (36%), Gaps = 79/315 (25%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K+KI+ G+    L  +      +    PPY      + Y  + + +        +  + E
Sbjct: 2   KNKILFGDCRDTLPTI-DVKARMCVTSPPY---YGLRNYGNEDNQIG-------QEDTPE 50

Query: 80  AYDAFTRAWLLACRRVLKPNGTLW-VIGSYHNIFR------------------------- 113
            +         + R VL  +GTLW  IG  +  +R                         
Sbjct: 51  QFINNLVEVFRSVRDVLTDDGTLWVNIGDSYYNYRPGKGQALVKQTVSTTNRDQPDKCAR 110

Query: 114 -------------------IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
                              +   L+   +++  DI+W K NPMP     R   +HE L  
Sbjct: 111 RANKLDGLKEKDLIGIPWMLAFALRADGWYLRQDIIWHKPNPMPESVRDRCTKSHEYLFL 170

Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS---------------------GSE 193
            S +   K Y  N    +   +D   R+       +                        
Sbjct: 171 LSKN--RKYYYDNEAIKEPVKQDWGTRNRDQGKYHNEGTGLQPHTGLTKSYTTKNKRSVW 228

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
            + NK  +  H    P  L+   +++ ++ GDIILDPF GSGT+G VAKK  R++IG E+
Sbjct: 229 SITNKPYKGAHFAVFPPDLIEPCILAGSERGDIILDPFMGSGTTGMVAKKHGRNYIGCEL 288

Query: 254 KQDYIDIATKRIASV 268
            +DY  + T RI SV
Sbjct: 289 HEDYASLQTDRIDSV 303


>gi|298369799|ref|ZP_06981115.1| DNA (cytosine-5-)-methyltransferase [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298281259|gb|EFI22748.1| DNA (cytosine-5-)-methyltransferase [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 302

 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 59/298 (19%), Positives = 113/298 (37%), Gaps = 50/298 (16%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ-------LYRPDHSLVDAVTD 70
           +  + +I G+   +++K+P + +     DPPYN +  G        + R  + + ++  +
Sbjct: 3   DIINSVIHGDCRDIMKKIPNEFISSCVTDPPYNYEFIGHNNWDEKEIQRRKNRINNSSNN 62

Query: 71  -------------------SWDK--FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
                               W K    +   Y  +   W     R+ KP  ++ +  S  
Sbjct: 63  TLIKHIPYGSGLSGGVRNEKWYKKNRDNILEYQQWCLDWGAELFRICKPGASVVIFNSTR 122

Query: 110 NIFRIGTMLQNLNFWILNDIVWRKSNPMPNF---------RGRRFQNA----------HE 150
            +  +   L+   F+  + IV+R+++ +P           +G   +NA           E
Sbjct: 123 TVAHVQVALEQAGFYTRDIIVYRRASGIPKGLNLKRKLEKQGYYNKNAEGLHSCLRNEWE 182

Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
            +      P    Y   Y          +M++         + +        +H T KP 
Sbjct: 183 AICVLQK-PLKNNYLQTYIEYGTGLFYTKMKNGGFRSNIIENIKKDAPLDFNIHTTIKPL 241

Query: 211 ALLSRI--LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
            L+  +  +        I+LDPF GSGT+   AKK+  +F+GIE++  YI+I  KR+ 
Sbjct: 242 DLMINLLDIFVPKNENAIVLDPFSGSGTTLVAAKKMGINFLGIEIEPKYIEIINKRLE 299


>gi|328952292|ref|YP_004369626.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
           11109]
 gi|328452616|gb|AEB08445.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
           11109]
          Length = 298

 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 70/285 (24%), Positives = 113/285 (39%), Gaps = 61/285 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I G+++SVL  L +         PPY    +  +  P    + A T   D       Y
Sbjct: 15  EVICGDALSVLRNLESGICRCCITSPPYWGLRDYGV--PTDHQIGAETHLVD-------Y 65

Query: 82  DAFTRAWLLACRRVLKPNGTLW-VIGSYHN------------------------------ 110
                       RVL P+GTLW  +G  +                               
Sbjct: 66  IKNLVEIFTEIHRVLTPDGTLWLNLGDSYTSGNRTWRDIDKKNPARYMRYRPPTPKGLKP 125

Query: 111 ------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
                  +R+   LQ   +++ +DI+W K N  P     R   +HE +   S +     Y
Sbjct: 126 KDLIGTPWRVAIALQEQGWYLRSDIIWFKPNCQPESVKDRPTRSHEYIFLFSKTE---KY 182

Query: 165 TFNYDALKAANEDV---QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
            +NY+A+   +        R+ W I   +          +  H    P  L++  L++ +
Sbjct: 183 YYNYEAILETSNSHGKRNRRTVWSINTGAF---------KGAHFATFPSKLVALCLLAGS 233

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           + GD +LDP FGSGT G V  KL R FIGIE+ ++Y+ +A +R+ 
Sbjct: 234 EFGDTVLDPCFGSGTVGEVCLKLGRKFIGIEINENYVVLARERLK 278


>gi|46198349|ref|YP_004016.1| methyltransferase [Thermus thermophilus HB27]
 gi|46195971|gb|AAS80389.1| methyltransferase [Thermus thermophilus HB27]
          Length = 308

 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 60/285 (21%), Positives = 97/285 (34%), Gaps = 49/285 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++  G++  VL  LP  SV L+   PPY               +    D+  +    E 
Sbjct: 22  HRLHVGDAREVLASLPEASVHLVVTSPPYWT-------------LKRYEDTPGQLGHIED 68

Query: 81  YDAFTRA---WLLACRRVLKPNGTLWVIGS--------------YHNIFRIGTMLQNLNF 123
           Y+AF            R+L P G L ++                +     I    + L F
Sbjct: 69  YEAFLDELDRVWREVFRLLVPGGRLVIVVGDVAVARRRFGRHLVFPLHADIQVRCRKLGF 128

Query: 124 WILNDIVWRKSN-------------PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
             LN I+W K                 P   G   +   E ++        +  T     
Sbjct: 129 DNLNPIIWHKHTNASLEVEGRGVFLGKPYEPGAIIKTEIEYILMQRKPGGYRKPTQEQRE 188

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
                ++   R    I            +  K HP   P  L  R++   +  GD++LDP
Sbjct: 189 KSRLPKEDFHRFFRQI------WDDIPGESTKDHPAPFPLELAERLVRMFSFVGDVVLDP 242

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           F G+GT+   A +  R  +G+E+   Y  +A +R A   P  ++E
Sbjct: 243 FAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFAKEVPGFSLE 287


>gi|325679154|ref|ZP_08158746.1| DNA (cytosine-5-)-methyltransferase [Ruminococcus albus 8]
 gi|324109159|gb|EGC03383.1| DNA (cytosine-5-)-methyltransferase [Ruminococcus albus 8]
          Length = 361

 Score =  148 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 66/254 (25%), Positives = 108/254 (42%), Gaps = 28/254 (11%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
             ++ ++L KL  +S D+I  DPPY +   G   +     + +  D       F+  D  
Sbjct: 134 HADAKTILNKLKTESFDMILTDPPYRVISGGTGGKNAPRGMLSKNDG----KIFDNNDIQ 189

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
              ++  C RVLKP+   +   ++ N+  +   +Q   F I N +VW K+N  P    R 
Sbjct: 190 FDEYIPECYRVLKPDRQAYFFTNFLNLQPLMEAVQRAGFKIHNLLVWLKNNATP---NRW 246

Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
           +    E +++               A   +N                  +  N  G+KLH
Sbjct: 247 YMKNCEYVLFCYKGK----------AKAISNCG-----------SKTVHQFDNIKGQKLH 285

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            T+KP  LL   + +ST+ GD ILDPF GSG++ A +  L R     E+ + Y+ +   R
Sbjct: 286 ETEKPVELLKMYIENSTEEGDWILDPFAGSGSTMAASLLLNRKVFTCEIDKKYLTVIKNR 345

Query: 265 IASVQPLGNIELTV 278
             S+   G  E T+
Sbjct: 346 AISIIKNGTDERTL 359


>gi|57234145|ref|YP_181807.1| DNA methylase [Dehalococcoides ethenogenes 195]
 gi|57224593|gb|AAW39650.1| DNA methylase [Dehalococcoides ethenogenes 195]
          Length = 421

 Score =  148 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 49/263 (18%), Positives = 92/263 (34%), Gaps = 36/263 (13%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G++     V + +  K  +LI  DPPY +              D +T   D   
Sbjct: 168 RHRLMCGDATSPEDVEKLMDGKKANLILTDPPYGVSFKAS---------DGLTIQNDSLK 218

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E Y  F  A        L+  G  +   +            +  F +    +W K++ 
Sbjct: 219 GEEFY-KFLLAAFKNMADHLEKGGAAYCFHADTEGLTFRKAFIDAGFHLAGVCIWVKNSL 277

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +        Q  HE +++         +  +       N D   R               
Sbjct: 278 VLGRSDY--QWQHEPVLYGFLQNGKHPWYSDRKQTTIWNYDKPKR--------------- 320

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                K HPT KP  LL   + +S++   +++D F GSG++    ++L R    +E+   
Sbjct: 321 ----NKDHPTSKPLDLLGYPIKNSSQENSVVIDTFGGSGSTLMACEQLNRICCMMELDPK 376

Query: 257 YIDIATKRIASVQPLGNIELTVL 279
           Y  +  +R   V+  G+ E   +
Sbjct: 377 YASVILRRY--VEDTGDTENVYV 397


>gi|2996358|gb|AAC13238.1| adenine DNA methyltransferase homolog [Yersinia pestis KIM 10]
          Length = 213

 Score =  148 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 58/239 (24%), Positives = 98/239 (41%), Gaps = 43/239 (17%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           +   P  +VD I  DPPY +       R   ++    TD W + +  E Y          
Sbjct: 1   MSGFPDNAVDFILTDPPYLVGFRD---RQGRTIAGDKTDEWLQPACHEMY---------- 47

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNFRGRRFQNAHE 150
             RVLK +  +     ++ + R     +N  F ++  +V+ K+      + G R + A+ 
Sbjct: 48  --RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYTSKAAYVGYRHECAYI 105

Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
                 P P+              N+ +  +                  G + HPT+KP 
Sbjct: 106 LAKGRPPLPQ-----------NPLNDVIAWKY----------------SGNRHHPTEKPV 138

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
             L  ++ S T PG I+LDPF GSG++   A +  R +IGIE+ + Y     +R+A+V+
Sbjct: 139 TSLQPLIESFTHPGAIVLDPFAGSGSTCVAALQAGRRYIGIELLEQYHRAGQQRLAAVR 197


>gi|53717799|ref|YP_106785.1| phage-encoded modification methylase [Burkholderia pseudomallei
           K96243]
 gi|52208213|emb|CAH34144.1| phage-encoded modification methylase [Burkholderia pseudomallei
           K96243]
          Length = 252

 Score =  148 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 59/260 (22%), Positives = 101/260 (38%), Gaps = 32/260 (12%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDA----- 67
           +    D++   +++++   LP  S+D++F DPPY    L  + +   P    +++     
Sbjct: 14  LSPLLDRLHAMDALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSTKYINSDTKTV 73

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
            TD         A+  +  AWL  CRR LKP G L     +  +  +  ++Q     +  
Sbjct: 74  YTDFESDNMDQRAWAFWCHAWLSECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILRG 133

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
             VW K+      R   F    E ++WAS         +                   +P
Sbjct: 134 VAVWDKTPGRTRPRRGGFAQQAEFVVWASRGVMRDCEVYLPGVFPC-----------RLP 182

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           +             K H T+KP   ++R +V     G ++ D F GSGT    A+++   
Sbjct: 183 LP------------KQHVTEKPLD-IAREVVRLVPAGGVVCDLFAGSGTFLVAAREVGLH 229

Query: 248 FIGIEMKQDYIDIATKRIAS 267
           +IG E  Q Y  +A  R+  
Sbjct: 230 WIGSETNQTYRSLACNRLMQ 249


>gi|317177078|dbj|BAJ54867.1| adenine specific DNA methyltransferase [Helicobacter pylori F16]
          Length = 255

 Score =  148 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 94/254 (37%), Gaps = 27/254 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+ +SVLE       DL    PPYNL +  Q                + F  ++ Y 
Sbjct: 12  LYHGD-VSVLETFEKGFYDLCVTSPPYNLSIEYQGS--------------NDFRVYDDYL 56

Query: 83  AFTRAWLLACRRVLKPNGTLW--------VIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            + + WL  C    K    L           G       I  + +   +   N I+W +S
Sbjct: 57  NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNES 116

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N         +  A       + +P      F  +  K   +   +  +  +   +G   
Sbjct: 117 NISRRTAWGSWLQASAP---YAIAPVELIVIFYKNEYKRQKQTSTISKEEFLLYTNGLWS 173

Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
              +  ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+E+
Sbjct: 174 FSGESKKRLKHPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEI 233

Query: 254 KQDYIDIATKRIAS 267
           +++Y +++ KRI  
Sbjct: 234 EKEYCELSKKRILE 247


>gi|307701753|ref|ZP_07638767.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
 gi|307613011|gb|EFN92266.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
          Length = 441

 Score =  148 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 70/315 (22%), Positives = 129/315 (40%), Gaps = 40/315 (12%)

Query: 21  DKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLNG----QLYRPDHSLVDA--VTDS 71
           +++  G +++ L  L  +    VD ++ DPPYN Q +      L+     +++     D 
Sbjct: 47  NRLYVGENLAALGALAGEFAGGVDCVYIDPPYNSQADYVAKMALHGDGGQILEQKQYGDR 106

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDI 129
           WD       Y  F    L A R +L   G+++V   +H    +  +   +     +LN+I
Sbjct: 107 WDD----AQYLQFMFERLGALRELLADTGSIFVHCDWHAAASLRLVCDEVFGSRNLLNEI 162

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN-----YDALKAANEDVQMRSDW 184
           VW   +   + R    +  H+T+++ + + +   +  +     Y A  A         + 
Sbjct: 163 VWIYGSGGGSRRRFGRK--HDTILFYAKNARRNFFDPDAVRVPYRAAIAPKRRGLFHPEG 220

Query: 185 LI--PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           ++   +        +      +PTQKP A++ R L  +  PG ++LD F GSG++   A 
Sbjct: 221 MVAPDVWDIPRPPNHATSWVGYPTQKPLAVMERALRGACPPGGLVLDCFAGSGSTLVAAA 280

Query: 243 KLRRSFIGIEMKQDYIDIATKRIAS------VQPLGNIELTVLTGKRTEPRVAFNLLVER 296
            L   FIG+E     + +A KR+ S      V  +G+  L  L  KR  P          
Sbjct: 281 GLGLRFIGVECAALGVHLARKRLVSLGASFGVWRVGDTHLMNLGDKRQPPHHP------- 333

Query: 297 GLIQPGQILTNAQGN 311
              +PG++  +    
Sbjct: 334 ---KPGELNRDESNR 345


>gi|307151673|ref|YP_003887057.1| DNA methylase N-4/N-6 domain-containing protein [Cyanothece sp. PCC
           7822]
 gi|306981901|gb|ADN13782.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7822]
          Length = 285

 Score =  148 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 54/256 (21%), Positives = 100/256 (39%), Gaps = 27/256 (10%)

Query: 22  KIIKGNSISVLEKL-PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            + +G+S   LE L   + +DLI   PPYN+ +N               +S +   S++ 
Sbjct: 39  TLYQGDST--LENLFDEEFIDLIVTSPPYNVGINY--------------NSNNDELSYQD 82

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVI--------GSYHNIFRIGTMLQNLNFWILNDIVWR 132
           Y  F+  W+  C R  K      +         G+      + T+ Q + +   + IVW 
Sbjct: 83  YLDFSHQWMSNCYRWSKTQARFVLNIPLDKNKGGNRSVGADLTTIAQQVGWKYQSTIVWN 142

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           + N         + +A    + A        Y           +   ++ +  +   +G 
Sbjct: 143 EGNISRRTAWGSWLSASAPFVIAPVELIVVFYK-EQWKKTNGTKQSDLKKEEFMEWTNGL 201

Query: 193 ERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
                +  +++ HP   P  L  R +   +   D++ DPF GS T+   A + +R  IG+
Sbjct: 202 WTFNGESKKRIGHPAPFPRELPHRCIKLFSYVDDLVFDPFCGSATTLLEAYRNKRRGIGV 261

Query: 252 EMKQDYIDIATKRIAS 267
           E+  DY +IA +R+  
Sbjct: 262 ELDLDYCEIAKRRLIE 277


>gi|256003547|ref|ZP_05428537.1| ParB domain protein nuclease [Clostridium thermocellum DSM 2360]
 gi|255992571|gb|EEU02663.1| ParB domain protein nuclease [Clostridium thermocellum DSM 2360]
 gi|316941388|gb|ADU75422.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum DSM
           1313]
          Length = 417

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 59/269 (21%), Positives = 107/269 (39%), Gaps = 30/269 (11%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +++ G+S     V + +  K    +F DPP+N+        P       + D      S
Sbjct: 169 HRLMCGDSAMLSDVQKLMDGKKARFVFTDPPWNVDYGSDTRHPSWKPRQILNDR----MS 224

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E + AF        R V +     +V+ S      +   L+   +   + I+W+K + +
Sbjct: 225 TEEFGAFLLRAFNCMREVSEAGCMTYVVMSAQEWGNVMNALREAGYHWSSTIIWKKDSLV 284

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
            + +    Q  +E +           Y +         +D +    W IP    SE    
Sbjct: 285 LSRKDYHTQ--YEPIW----------YGWLEGTRLCPLKDRKQSDVWEIPRPKVSEE--- 329

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
                 HPT KP +L+++ +++S++ GD+ LD F GSGT+   A++  R    +E+   Y
Sbjct: 330 ------HPTMKPVSLVAKAMLNSSRAGDLALDLFGGSGTTMIAAQQTGRVCFMMELDPKY 383

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEP 286
            D+  KR   V   G   + ++T     P
Sbjct: 384 CDVIVKRY--VSQFGADSVFLVTCSEKIP 410


>gi|315034680|gb|EFT46612.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0027]
          Length = 400

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 104/251 (41%), Gaps = 32/251 (12%)

Query: 20  KDKIIKGNS---ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G+S   + V + +  K  DL+  DPPYN+   G+         +A+T   D   
Sbjct: 157 RHRLMCGDSTNSLEVEKLMGNKKADLLITDPPYNVAYEGKG-------KEALTIKNDSKE 209

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           + E + +F      A    +K   + +V  +   +    T L+   F +  +++W K++ 
Sbjct: 210 TNE-FHSFLYEAFSAAINNMKLGSSFYVWYASSEVVNFHTALEEAGFLVKQELIWNKNSM 268

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           + + +   ++  HE  ++   S  +  +  +       N D                   
Sbjct: 269 VLSRQDYHWK--HEPCLYGWASGGSHSWYSDRKQTTILNFDRPTV--------------- 311

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                K HPT KP AL    + +S+K GD ILD F GSGT+    ++  R    +E+   
Sbjct: 312 ----NKEHPTMKPVALFDYQIKNSSKQGDCILDLFGGSGTTLIACEQNEREAYLMELDPR 367

Query: 257 YIDIATKRIAS 267
           Y+D+   R  +
Sbjct: 368 YVDVIIARWEA 378


>gi|306818253|ref|ZP_07451983.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris ATCC
           35239]
 gi|304648992|gb|EFM46287.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris ATCC
           35239]
          Length = 451

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 70/315 (22%), Positives = 129/315 (40%), Gaps = 40/315 (12%)

Query: 21  DKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLNG----QLYRPDHSLVDA--VTDS 71
           +++  G +++ L  L  +    VD ++ DPPYN Q +      L+     +++     D 
Sbjct: 47  NRLYVGENLAALGALAGEFAGGVDCVYIDPPYNSQADYVAKMALHGDGGQILEQKQYGDR 106

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDI 129
           WD       Y  F    L A R +L   G+++V   +H    +  +   +     +LN+I
Sbjct: 107 WDD----AQYLQFMFERLGALRELLADTGSIFVHCDWHAAASLRLVCDEVFGSRNLLNEI 162

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN-----YDALKAANEDVQMRSDW 184
           VW   +   + R    +  H+T+++ + + +   +  +     Y A  A         + 
Sbjct: 163 VWIYGSGGGSRRRFGRK--HDTILFYAKNARRNFFDPDAVRVPYRAAIAPKRRGLFHPEG 220

Query: 185 LI--PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           ++   +        +      +PTQKP A++ R L  +  PG ++LD F GSG++   A 
Sbjct: 221 MVAPDVWDIPRPPNHATSWVGYPTQKPLAVMERALRGACPPGGLVLDCFAGSGSTLVAAA 280

Query: 243 KLRRSFIGIEMKQDYIDIATKRIAS------VQPLGNIELTVLTGKRTEPRVAFNLLVER 296
            L   FIG+E     + +A KR+ S      V  +G+  L  L  KR  P          
Sbjct: 281 GLGLRFIGVECAALGVHLARKRLVSLGASFGVWRVGDTHLMNLGDKRQPPHHP------- 333

Query: 297 GLIQPGQILTNAQGN 311
              +PG++  +    
Sbjct: 334 ---KPGELNRDESNR 345


>gi|325495846|gb|EGC93706.1| putative methylase [Escherichia fergusonii ECD227]
          Length = 215

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 99/244 (40%), Gaps = 53/244 (21%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           + ++P  ++D I  DPPY +       R   ++    TD W + +  E +          
Sbjct: 1   MARIPDNAIDFILTDPPYLVGFRD---RSGRTIAGDKTDEWLQPACNEMF---------- 47

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNFRGRRFQNAH- 149
             RVLK +  +     ++ + R     +N  F ++  +V+ K+      + G R + A+ 
Sbjct: 48  --RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAYVGYRHECAYI 105

Query: 150 ----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
                  +  +P P   G+ +                                 G + HP
Sbjct: 106 LAKGRPRLPQNPLPDVLGWKY--------------------------------SGNRHHP 133

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T+KP   L  ++ + T P  I+LDPF GSG++   A +  R +IGIE+ + Y     +R+
Sbjct: 134 TEKPVTSLQPLIENFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRL 193

Query: 266 ASVQ 269
           A+VQ
Sbjct: 194 AAVQ 197


>gi|308270591|emb|CBX27203.1| hypothetical protein N47_A12320 [uncultured Desulfobacterium sp.]
          Length = 421

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 63/285 (22%), Positives = 111/285 (38%), Gaps = 37/285 (12%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           M ++ S  +N +  S      ++I  +     +++   S+D  FADPPYN++        
Sbjct: 20  MKKRTSFEVNNSGES------RLINKDCFEAFKEIRDNSIDFAFADPPYNIKKKYH---- 69

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL--WVIGSY--HNIFRIGT 116
                     +W+     + Y  +   WL    RV+KP  T+    I  +   +   I +
Sbjct: 70  ----------NWNDAIDIKEYFVWCDKWLDELARVIKPGRTVAVLNIPQWLVRHFQHIKS 119

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET---------LIWASPSPK----AKG 163
            L   ++     +       MP   G    +  E          + W +   +     + 
Sbjct: 120 KLDFQSWITWEALGLPVRKIMPAHYGILCMSKGEPRGAVGRIEKINWDTRYYELNTLKQW 179

Query: 164 YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKP 223
           Y   +  +K  N       + L  +     RL++      HP Q P  L+ R++   T  
Sbjct: 180 YCVRHQCIKIRNSIKLTDREELSDLWWDIHRLKHNSKRVDHPCQLPPQLMRRLIGLYTIE 239

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           G+ +LDPF G+GT+  +A++L R FIG E+   Y  IA  R   +
Sbjct: 240 GECVLDPFNGAGTTTLIAQELGRRFIGFELSGVYHKIALNRHDEL 284


>gi|291521452|emb|CBK79745.1| DNA modification methylase [Coprococcus catus GD/7]
          Length = 267

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 54/253 (21%), Positives = 93/253 (36%), Gaps = 32/253 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP--------DHSLVDAVTDSWD 73
           +I+ G+++ +++       D +  DPPY      Q  R           S  +A+ D   
Sbjct: 27  RILHGDTLKLVKAFQPGIFDAVITDPPYASGGTKQNERNRTTNQKYSSMSAANALPDFDG 86

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                 ++  +   WL   R+  K    + +   +     I   LQ   +      VW K
Sbjct: 87  DNKDQRSWTHWMAEWLYDVRKACKKGAPICLFIDWRQYPSITDALQWAGWIWRGTAVWDK 146

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
            N  P     RF+   E ++W S  P                       +  +    G  
Sbjct: 147 GNSRPQ--KGRFRQQAEYIVWGSNGPM--------------------PINRPVSCLPGVF 184

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           R  N    ++H T+KP  L+  ++    +PG +ILDPF G+GT+   A       +GIE+
Sbjct: 185 RYGNPQ-NRIHVTEKPLQLMKDVIQI-CEPGGLILDPFAGAGTTVLAAVVTGYRAVGIEV 242

Query: 254 KQDYIDIATKRIA 266
              Y  + + R+ 
Sbjct: 243 TDAYYKLGSDRVR 255


>gi|328954101|ref|YP_004371435.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
           11109]
 gi|328454425|gb|AEB10254.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
           11109]
          Length = 616

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 90/394 (22%), Positives = 162/394 (41%), Gaps = 67/394 (17%)

Query: 17  FEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN----------GQLYRPDHS 63
            ++++ +I G++   L  L       +DLI+ DPP+++  +          G+  + + S
Sbjct: 74  DDFRNLLIWGDNKLALAALLEQFRGKIDLIYIDPPFDVGADFTMQVQLGGEGEALQKEQS 133

Query: 64  LVDAV--TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
           +++AV   D+W K +  ++Y       L+  + +L  +G ++V   +     I  +L ++
Sbjct: 134 ILEAVAYRDTWGKGT--DSYLHMMYERLVLMKDLLSESGNIFVHCDWRVNSYIRLLLDDI 191

Query: 122 --NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
                  N+++W  S  M +   R F N H+T+ W    P   G+TFN D ++    +  
Sbjct: 192 LSGDNHQNELIWIYSR-MASKNQRNFNNTHQTIFWYRKGP---GFTFNVDQVRTEYAESS 247

Query: 180 MRSDWLIPICSGSERLRNKDGEKLH--------------------PTQKPEALLSRILVS 219
            +         GS  L+     +LH                     T+KPE LL  I+ +
Sbjct: 248 KKRAGYAKKGVGSGLLKEGSVCELHEKGKFPDDWMSIPFERNATYQTEKPENLLDVIIKA 307

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ---------- 269
           ++  GD++ D F GSGT+ AVA+KL R +IG+++ +  I ++ KR+  VQ          
Sbjct: 308 ASNEGDLVADFFCGSGTTMAVAEKLGRRWIGVDLGRYAIHVSRKRLIQVQRELHTAGKPY 367

Query: 270 ------PLGNIELT-----VLTGKRTEPRVAFNLLVERGLI--QPGQILTNAQGNISATV 316
                  LG  E        L G  +E R       +   +   P  +L   +      V
Sbjct: 368 RSFDVYNLGRYERQWWQLDRLKGADSEHRRLVLQFYQAAPLDNPPHPLLHGKKHGAFVHV 427

Query: 317 CADGTLISGTELGSIHRVGAKVSGSE-TCNGWNF 349
               ++ +  EL +         G E  C  W F
Sbjct: 428 DQIDSIFAFDELKTAAEAARSAGGRELHCLAWEF 461


>gi|194015332|ref|ZP_03053948.1| DNA methylase [Bacillus pumilus ATCC 7061]
 gi|194012736|gb|EDW22302.1| DNA methylase [Bacillus pumilus ATCC 7061]
          Length = 265

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 61/270 (22%), Positives = 99/270 (36%), Gaps = 46/270 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I + + +  ++ +P +SVDLI  D PY                      WDK    E 
Sbjct: 12  NRIYQMDCLEGMKLIPDESVDLILCDLPYGT---------------TDVKRWDKIIPIE- 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                + W    +R++K  G + + GS      +     +       + +W K+      
Sbjct: 56  -----KLW-EQYKRIIKETGNVVLFGSQPFTSYLVN---SNPSMFRYEWIWDKTKGANFL 106

Query: 141 RGRRFQ-NAHETLIWASP---SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
                    HE ++  S    SP  KG    +       E    RS     I +G     
Sbjct: 107 NSNHQPLKVHENILVFSKLPASPNKKGTATYFPQKTEGKEYKVKRSSHKGEIFNGGSLRD 166

Query: 197 N-----------------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
           N                 KD + +HPTQKP  +   ++ + T   DI+LD   GSGT+  
Sbjct: 167 NFEKVNEGRHPVSIQTFLKDKDNIHPTQKPVEMCEYLIRTYTDQSDIVLDNCMGSGTTAV 226

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            +   +R +IG E    +  +A KR+  VQ
Sbjct: 227 ASIISQRKWIGFETDPTFYQLANKRLEQVQ 256


>gi|218960689|ref|YP_001740464.1| DNA methylase N-4/N-6 [Candidatus Cloacamonas acidaminovorans]
 gi|167729346|emb|CAO80257.1| DNA methylase N-4/N-6 [Candidatus Cloacamonas acidaminovorans]
          Length = 403

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 66/267 (24%), Positives = 106/267 (39%), Gaps = 38/267 (14%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            ++ D+I+ G+S  +L +LP   +DLIF  PPYN  L+               +  +   
Sbjct: 156 DKYMDRIVCGDSKIILSQLPNNCIDLIFTSPPYNFGLDY--------------EENEDDQ 201

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWV-----IGSY-HNIFRIGTMLQNLNFWILNDIV 130
            +E Y     A    C RVLK  G   +        Y      I   L         +I+
Sbjct: 202 HWEKYFETLFAIFDECIRVLKYGGRFIINVQPLFSDYIPTHHIISNYLMQKKLIWKGEIL 261

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W K+N    +             W SPS     YT+ +  +       ++  D  I I  
Sbjct: 262 WEKNNYNCKYTAWG--------SWKSPSNPYLKYTWEFIEIFCKGTLKKIGDDKKIDISG 313

Query: 191 GSERLR----------NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
              +             +  E  HP   PE L ++++   +   DI+LDPF G GT+  V
Sbjct: 314 DEFKKWVYAKWSIAPERRMKEFNHPAMFPEELATKVIKLFSYQEDIVLDPFNGVGTTTLV 373

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIAS 267
           AK  +R ++GI++  +Y   A +R++S
Sbjct: 374 AKLNKRHYLGIDISSEYCSKAEERLSS 400


>gi|194015599|ref|ZP_03054215.1| DNA methylase N-4/N-6 [Bacillus pumilus ATCC 7061]
 gi|194013003|gb|EDW22569.1| DNA methylase N-4/N-6 [Bacillus pumilus ATCC 7061]
          Length = 425

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 107/252 (42%), Gaps = 14/252 (5%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYR-PDHSLVDAVTDSWDKF 75
           +  ++ G++     V   +     DL+  DPPYN+ +     +  D      + DS D  
Sbjct: 172 RHTLVCGDATKIEDVDRLMSGHKADLVITDPPYNVAVKSDSKKLNDDGHASILNDSMDDG 231

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
                +D F R   L   RV+     ++V  +          +++ +  I +  +W K+ 
Sbjct: 232 ----QFDLFLREVFLNYSRVMNEKAAIYVFHAASYQRAFENEMRHADIDIRSQCIWVKN- 286

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
             P F   +++  HE + +A      KGY+ N+   +      +  +       +  E  
Sbjct: 287 -SPTFGWAQYKYMHEPVFYAFK----KGYSPNWYGDRKQVTVWRADTSEEGEPATIWEVS 341

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           R    + +HPTQKP  L++  L +S+K GD ++D F GSG++    ++  R  + +E+  
Sbjct: 342 RGDTTKYVHPTQKPLDLINIPLSNSSKKGDRVVDFFGGSGSTLMTCEQTDREALLLELDP 401

Query: 256 DYIDIATKRIAS 267
            + D+  KR   
Sbjct: 402 YFCDVIKKRFTE 413


>gi|227874929|ref|ZP_03993081.1| DNA methylase N-4/N-6 domain protein [Mobiluncus mulieris ATCC
           35243]
 gi|227844506|gb|EEJ54663.1| DNA methylase N-4/N-6 domain protein [Mobiluncus mulieris ATCC
           35243]
          Length = 446

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 70/315 (22%), Positives = 128/315 (40%), Gaps = 40/315 (12%)

Query: 21  DKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLNG----QLYRPDHSLVDA--VTDS 71
           +++  G +++ L  L  +    VD ++ DPPYN Q +      L+     +++     D 
Sbjct: 47  NRLYVGENLAALGALAGEFAGGVDCVYIDPPYNSQADYVAKMALHGDGGQILEQKQYGDR 106

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDI 129
           WD       Y  F    L A R +L   G+++V   +H    +  +   +     +LN+I
Sbjct: 107 WDD----AQYLQFMFERLGALRELLADTGSIFVHCDWHAAASLRLVCDEVFGSRNLLNEI 162

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN-----YDALKAANEDVQMRSDW 184
           VW   +   + R    +  H+T+++ + + +   +  +     Y A  A         + 
Sbjct: 163 VWIYGSGGGSRRRFGRK--HDTILFYAKNARRNFFDPDAVRVPYRAAIAPKRRGLFHPEG 220

Query: 185 LI--PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           ++   +        +      +PTQKP A++ R L  +  PG ++LD F GSG++   A 
Sbjct: 221 MVAPDVWDIPRPPNHATSWVGYPTQKPLAVMERALRGACPPGGLVLDCFAGSGSTLVAAA 280

Query: 243 KLRRSFIGIEMKQDYIDIATKRIAS------VQPLGNIELTVLTGKRTEPRVAFNLLVER 296
            L   FIG+E     + +A KR+ S      V   G+  L  L  KR  P          
Sbjct: 281 GLGLRFIGVECAALGVHLARKRLVSLGASFGVWRSGDTHLMNLGDKRQPPHHP------- 333

Query: 297 GLIQPGQILTNAQGN 311
              +PG++  +    
Sbjct: 334 ---KPGELNRDKSNR 345


>gi|83645282|ref|YP_433717.1| BamHI-like site-specific methyltransferase [Hahella chejuensis KCTC
           2396]
 gi|83633325|gb|ABC29292.1| BamHI-like site-specific methyltransferase [Hahella chejuensis KCTC
           2396]
          Length = 396

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 58/267 (21%), Positives = 105/267 (39%), Gaps = 32/267 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+ +G+ I  L+ +   S+DL+FADPP+NL                     D     E Y
Sbjct: 113 KLYRGDCIRFLKSIDNDSIDLVFADPPFNLSK-------------LYPSEIDDRLKTENY 159

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             + + WL  C RV+KP G L++         + + +++      N I       +P   
Sbjct: 160 LHWCQEWLFECARVIKPGGALFLWNLPKWNSSLSSYIESF-LTFRNWIGVDIKYSLPIS- 217

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW-------------LIPI 188
             R   +H +L++     +   +  +   ++   +      D+             +  I
Sbjct: 218 -NRLYPSHYSLLYFIKGERPNTFNPDRLPMQVCPKCYGDLKDYGGYKDKMNPAGVNMSDI 276

Query: 189 C-SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                     K   +    +    LL RI+  +TK GD++LDPF G+GT+   A+   R 
Sbjct: 277 WLDIPPVRHAKYKRRDGSNELSLKLLDRIIQMATKEGDVVLDPFGGAGTTYMAAELKGRR 336

Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNI 274
           ++G E+    ID+  +R   ++    I
Sbjct: 337 WLGCEIGP--IDVIVERFNLIEKEREI 361


>gi|148655960|ref|YP_001276165.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus sp.
           RS-1]
 gi|148568070|gb|ABQ90215.1| DNA methylase N-4/N-6 domain protein [Roseiflexus sp. RS-1]
          Length = 460

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 87/370 (23%), Positives = 150/370 (40%), Gaps = 66/370 (17%)

Query: 21  DKIIKGNSISVLEKLPAKS----VDLIFADPPYNLQLNG----QLYRPDHSLV-----DA 67
           + +I G +++ L  L A      ++LI+ DPP+   ++     +L   D + +       
Sbjct: 46  NMLIHGENLAALTWLLANGYRQRINLIYIDPPFGAGIDRVRRIRLRGSDSARLIPVPNAE 105

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
             D+WD     +AY  F    L+A R +L  +G++++   +     +  ++  +      
Sbjct: 106 YRDTWDD----DAYLQFMYERLIALRDLLADDGSIYLHCDFRKAHLLRCLMDEVFGAERM 161

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE----------D 177
                   P      R+F   H+T++  +    +  +TFNYD +               D
Sbjct: 162 LNEIIWFYPSGGDGERQFNRKHDTILLYAR---SDRWTFNYDQVLIPYTQQQLARFRQAD 218

Query: 178 VQMRSDWLI-PICSGSERLRNKDG-----------------EKLHPTQKPEALLSRILVS 219
              R  W + P     +    K G                 +  +PT KP ALL RI+ +
Sbjct: 219 EHGRYYWNVNPRGERVKTYLRKPGVGAYDVWTIPINAALVRDLGYPTTKPPALLDRIVRA 278

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV----QPLGNIE 275
           S++PGD++LD F GSGT+  VA++L R +I  ++    I I  +R+  +     P  +  
Sbjct: 279 SSRPGDLVLDCFAGSGTTAVVAQQLGRRWIACDVNPGAIQITARRLRRMPQPRDPASDGF 338

Query: 276 LTVLTGKRTE-PRVAFNLLVER----------GLIQPGQILTNAQGNISATVC-ADGTLI 323
             V  G+ T  PR    + + R          G I P   LTN  G+++   C  D  LI
Sbjct: 339 TIVQIGETTPAPRGEATVRIVRTDAQITITVEGYINPA--LTNVSGDLTDWRCMVDEILI 396

Query: 324 SGTELGSIHR 333
                G + R
Sbjct: 397 DPAYDGRLFR 406


>gi|125974144|ref|YP_001038054.1| ParB-like nuclease [Clostridium thermocellum ATCC 27405]
 gi|125714369|gb|ABN52861.1| ParB-like nuclease [Clostridium thermocellum ATCC 27405]
          Length = 417

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 56/269 (20%), Positives = 109/269 (40%), Gaps = 30/269 (11%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +++ G+S     V + +  +    +F DPP+N+        P       + D+     S
Sbjct: 169 HRLMCGDSTMLSDVQKLMNGQKARFVFTDPPWNVDYGSDTRHPSWKPRQILNDN----MS 224

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E + AF        + V +     +++ S      +  +++   +   + I+W+K + +
Sbjct: 225 TEEFGAFLLRAFKCMKEVSEAGCMTYIVMSAQEWGSLMNVMREAGYHWSSTIIWKKDSLV 284

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
            + +    Q  +E +           Y +         +D +    W IP    SE    
Sbjct: 285 LSRKDYHTQ--YEPIW----------YGWLEGTRLCPLKDRKQSDVWEIPRPKVSEE--- 329

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
                 HPT KP +L+++ +++S+  GD+ LD F GSGT+   A++  R    +E+   Y
Sbjct: 330 ------HPTMKPVSLVAKAMLNSSHIGDLTLDLFGGSGTTMIAAQQTGRVCFMMELDPKY 383

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEP 286
            D+  KR   V   G   + ++TG    P
Sbjct: 384 CDVIVKRY--VSQFGADSVFLVTGSEKIP 410


>gi|306818317|ref|ZP_07452046.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris ATCC
           35239]
 gi|304648962|gb|EFM46258.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris ATCC
           35239]
          Length = 354

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 75/314 (23%), Positives = 119/314 (37%), Gaps = 70/314 (22%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL--------------------------- 53
           + +I G+++ VL  L  ++  LI+ DPP+N                              
Sbjct: 34  NTVIHGDNLPVLRGLADETFQLIYIDPPFNTGKVQSRVTMRTRQVREPGAAGGAEGADSD 93

Query: 54  -----------NGQLYRPDHSLVDAVTDS----WDKFSSFEAY--------DAFTRAW-- 88
                       G   + D +   A ++S      K  S+E          D F   W  
Sbjct: 94  GSPEPGGSPASRGASRKSDAAPSTAGSNSGSRVGFKGQSYETIRGQVTSYDDEFADYWGF 153

Query: 89  ----LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMPNFRG 142
               L    RVLKP+GT ++   Y  +     +L  L      LN+I+W           
Sbjct: 154 LAPRLEEAWRVLKPSGTFYLHLDYREVHYAKVLLDALFGRECFLNEIIWAYDYGART--K 211

Query: 143 RRFQNAHETLIWASPSPKAKGYTFN--------YDALKAANEDVQMRSDWLIPICSGSER 194
           RR+   H+ ++     P  K Y F+        Y A      +   R      +   +  
Sbjct: 212 RRWPAKHDNILVYVKDP--KQYYFDSESVDREPYMAPGLVTAEKAARGKLPTDVWWHTIV 269

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                 +  + TQKPE +L RI+ +S++PGD +LD F GSGT+GAVA K+ R F+ ++  
Sbjct: 270 SPTGKEKTGYATQKPEGILRRIVAASSRPGDWVLDFFAGSGTTGAVAGKMGRHFVLVDEN 329

Query: 255 QDYIDIATKRIASV 268
              I +   R A+ 
Sbjct: 330 PQAIAVMRARFAAA 343


>gi|304436375|ref|ZP_07396351.1| DNA (cytosine-5-)-methyltransferase [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304370644|gb|EFM24293.1| DNA (cytosine-5-)-methyltransferase [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 421

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/280 (19%), Positives = 113/280 (40%), Gaps = 34/280 (12%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K ++I G+S    +    L  + V+L+  DPPY + L     +  +          D  +
Sbjct: 169 KHRVICGDSTLPETYERLLGGEKVNLVCTDPPYFVALESSSGKIKN----------DDLN 218

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             +AY  F ++   A   V+  + +++V  +           ++  F +   +VW+K   
Sbjct: 219 DKDAY-EFLKSAFTAFHSVMAADASIYVFYATAKARIFHDAYEDAGFKVGAGLVWKKDRL 277

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +      ++   HE +IW         +  +         D                +  
Sbjct: 278 VLTRTDWKYI--HEPIIWGWRKDGRHRWYGDQKQTTVFAFDRI--------------KDS 321

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
            KDG   HP+ KP  L++ ++   T+   ++LD F GS ++    ++L R   G+E++  
Sbjct: 322 KKDGC-GHPSSKPVPLIAYLVKQCTQTNGVVLDGFLGSASTLIACEQLGRICYGVELEPK 380

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
           ++D+A +R    +  GN E   L  +R   R+ +  +++ 
Sbjct: 381 FVDVAVERYIQSKD-GNAEDVFL--ERDGERIPYADVLKA 417


>gi|313898088|ref|ZP_07831627.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. HGF2]
 gi|312957116|gb|EFR38745.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. HGF2]
          Length = 416

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 98/262 (37%), Gaps = 37/262 (14%)

Query: 21  DKIIKGNSI--SVLEKLPA-KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +++ G+S      E L   K  +L+  DPPYN+   G   +  +               
Sbjct: 167 HRLVCGDSTKPETYELLMNRKKANLVVTDPPYNVNYEGSAGKIKN-----------DNME 215

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            +A+  F           +  + +++V  +            +  F++    +W+K + +
Sbjct: 216 NDAFYQFLLDAYTRMYESMADDASIYVFHADTEGLNFRRAFADAGFYLSGCCIWKKQSLV 275

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                  +Q  HE  ++                   + +           I    +  +N
Sbjct: 276 --LGRSPYQWMHEPCLFGWK---------------KSGKHQWYTGRKETTIWEFDKPKKN 318

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
            D    HPT KP  LL+  +++S+    ++LDPF GSG++    ++  R    IE+ + +
Sbjct: 319 GD----HPTMKPIPLLAYPIMNSSMTNSLVLDPFGGSGSTLIACEQTGRICYTIELDEKF 374

Query: 258 IDIATKRIASVQPLGNIELTVL 279
            D+  KR   ++ +G+ E   +
Sbjct: 375 CDVIVKRY--IEQVGSSEKVSI 394


>gi|317501088|ref|ZP_07959294.1| DNA methylase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316897475|gb|EFV19540.1| DNA methylase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 421

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 90/267 (33%), Gaps = 34/267 (12%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G++     V + +  K  +L+  DPPY +              D +T   D   
Sbjct: 168 RHRVMCGDATSPEDVEKLMNGKKANLVLTDPPYGVSFKAS---------DGLTIQNDSLK 218

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E Y  F  A        L+  G  +   +            +  F +    +W K++ 
Sbjct: 219 GEEFY-KFLLAAFKNMADHLEKGGAAYCFHADTEGLTFRKAFIDAGFHLAGVCIWVKNSL 277

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +        Q  HE +++         +  +       N D   R               
Sbjct: 278 VLGRSDY--QWQHEPVLYGFLQNGKHPWYSDRKQTTIWNYDKPKR--------------- 320

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                K HPT KP  LL   + +S++   +++D F GSG++    ++L R    +E+   
Sbjct: 321 ----NKDHPTSKPLDLLGYPIQNSSQENSVVIDTFGGSGSTLMACEQLNRVCYMMELDPK 376

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKR 283
           Y  +  +R             +  G++
Sbjct: 377 YASVILRRYVEDTGDDENVYVIRNGEK 403


>gi|161525447|ref|YP_001580459.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           multivorans ATCC 17616]
 gi|189349817|ref|YP_001945445.1| putative DNA methylase [Burkholderia multivorans ATCC 17616]
 gi|160342876|gb|ABX15962.1| DNA methylase N-4/N-6 domain protein [Burkholderia multivorans ATCC
           17616]
 gi|189333839|dbj|BAG42909.1| putative DNA methylase [Burkholderia multivorans ATCC 17616]
          Length = 421

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 97/248 (39%), Gaps = 31/248 (12%)

Query: 21  DKIIKGNSISVLE---KLPA-KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            +++ G++ +       LP  +  D++F DPPYN+                + +     +
Sbjct: 171 HRLVCGDATTAEAFALLLPDGERADMVFTDPPYNVNYANSAKDKLRGKHRPILND----A 226

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E++  F    L       +  G ++V  S   +  +    + +       I+W K+  
Sbjct: 227 LGESFYDFLYDALALINAHTR--GAIYVAMSSSELDTLQAAFRAVGGHWSTFIIWAKNTF 284

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
                    Q  +E +++  P            A +    D      W I     ++   
Sbjct: 285 TLGRADY--QRQYEPILYGWPEG----------AERYWCGDRDQGDVWQIKKPQKND--- 329

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                 LHPT KP  L+ R + +S++PGD++LDPF GSGT+   A+K  R    IE+   
Sbjct: 330 ------LHPTMKPVELVERAIRNSSRPGDVVLDPFGGSGTTLIAAEKAGRVARLIELDPK 383

Query: 257 YIDIATKR 264
           Y D+  +R
Sbjct: 384 YTDVIVRR 391


>gi|160938499|ref|ZP_02085854.1| hypothetical protein CLOBOL_03397 [Clostridium bolteae ATCC
           BAA-613]
 gi|167771762|ref|ZP_02443815.1| hypothetical protein ANACOL_03134 [Anaerotruncus colihominis DSM
           17241]
 gi|225375443|ref|ZP_03752664.1| hypothetical protein ROSEINA2194_01068 [Roseburia inulinivorans DSM
           16841]
 gi|239623005|ref|ZP_04666036.1| modification DNA methylase [Clostridiales bacterium 1_7_47_FAA]
 gi|158438872|gb|EDP16629.1| hypothetical protein CLOBOL_03397 [Clostridium bolteae ATCC
           BAA-613]
 gi|167666402|gb|EDS10532.1| hypothetical protein ANACOL_03134 [Anaerotruncus colihominis DSM
           17241]
 gi|225212733|gb|EEG95087.1| hypothetical protein ROSEINA2194_01068 [Roseburia inulinivorans DSM
           16841]
 gi|239522584|gb|EEQ62450.1| modification DNA methylase [Clostridiales bacterium 1_7_47FAA]
          Length = 319

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 63/328 (19%), Positives = 108/328 (32%), Gaps = 91/328 (27%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            D II  +++  L +LP +SV      PPY    +             +     +  + E
Sbjct: 6   TDTIINRDALYALRELPEESVHCCVTSPPYYALRDY-----------GLDMQIGREDTPE 54

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI---------------------------- 111
            Y           RRVL+ +GTLW+  +                                
Sbjct: 55  QYIDRLTEVFRELRRVLRSDGTLWLNIADTYCGTGNKGYHADPKNPKGRNGQQIAKNNRV 114

Query: 112 ------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
                       + +   L+   +++ +DI+W+K NPMP     R    +E +   +   
Sbjct: 115 SGCKQKDLIGIPWLLAFALRADGWYLRSDIIWQKENPMPESVKDRPTRCYEHIFLLTK-- 172

Query: 160 KAKGYTFNYDALKAA----------------------------------NEDVQMRSDWL 185
            +K Y ++  A+                                             + L
Sbjct: 173 -SKKYFYDAAAIAEPLAPTTAARYRTGRSAGQKYADEVPGQGKVQGLNRARSGSYYDEAL 231

Query: 186 IPICSGSERLR---NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           +P       +        +  H    P  L    + +    G ++LDPFFGSGT+GA A+
Sbjct: 232 MPTMRNRRDVWLINTVPYKGGHFAAFPPKLAETCIKAGCPKGGVVLDPFFGSGTTGAAAR 291

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQP 270
           +L R +IGIE+  +Y  +A  RI   + 
Sbjct: 292 QLDRHYIGIEINAEYCALARARIGGTEK 319


>gi|148554497|ref|YP_001262079.1| DNA methylase N-4/N-6 domain-containing protein [Sphingomonas
           wittichii RW1]
 gi|148499687|gb|ABQ67941.1| DNA methylase N-4/N-6 domain protein [Sphingomonas wittichii RW1]
          Length = 483

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 65/290 (22%), Positives = 122/290 (42%), Gaps = 24/290 (8%)

Query: 21  DKIIKGNSIS-----VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
            +++ G+++      +L  L  +++D +F+DPPYN+++ G +     +          + 
Sbjct: 211 HRLLCGDALDPGSYALL--LDGRTIDGVFSDPPYNIKIEGVVSGLGRTRHKDFAMGVGEM 268

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
           S  + +  F   +LL CR    P   ++    +  +  +    ++  F  +N  VW K +
Sbjct: 269 SD-DQFRTFLGDYLLRCREHASPGAVIFACMDWRQVDLLMLAGRDAGFHRINKAVWHKGS 327

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
                 G  +++A+E ++     P     T   + +          + W     +G+ R 
Sbjct: 328 GG---MGSLYRSAYEEVVVFCTEP-----TLATNNVLLGKNGRNRTNLWTY---AGASRK 376

Query: 196 RNKDGEKL--HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
            +  G+ L  HPT KP  L+   L   TK GD++ DPF GSGT+   A+ + R   GIE+
Sbjct: 377 GSSAGKALADHPTPKPVELVVDALQDVTKRGDLVFDPFMGSGTTLVAAQAVGRIACGIEL 436

Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQ 303
              Y+D+A  R   +     I        +T   V  +     G I+  +
Sbjct: 437 DPGYVDVAILRWQQMTGKPAIHAE---SGKTFEEVGLDRSNRDGAIEAAE 483


>gi|126698701|ref|YP_001087598.1| modification DNA methylase [Clostridium difficile 630]
 gi|115250138|emb|CAJ67959.1| DNA-methyltransferase, cytosine-N4-specific; Tn1549-like,
           CTn4-Orf10 [Clostridium difficile]
          Length = 319

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 68/327 (20%), Positives = 113/327 (34%), Gaps = 93/327 (28%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW-DKFSSF 78
            D II  ++++ L++LP++SV      PPY            ++L D   D+   +  + 
Sbjct: 3   TDVIINRDALAALKELPSESVHCCVTSPPY------------YALRDYGLDAQIGQEDTP 50

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI--------------------------- 111
           + Y     A      RVL+ +GTLW+  +                               
Sbjct: 51  KQYIDRLTAVFGELYRVLRKDGTLWLNIADTYCSTGNKGCYADPKNPKGRTGQRIARNSR 110

Query: 112 -------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
                        + +   L+   +++ +DI+W+K NPMP     R    +E +   S  
Sbjct: 111 VIGCKQKDLIGIPWLLAFSLREQGWYLRSDIIWQKQNPMPESCKDRPTRCYEHIFLLSKE 170

Query: 159 PKAKGYTFNYDALKAA----------------------------------NEDVQMRSDW 184
              K Y ++  A+                                       D     D 
Sbjct: 171 ---KKYYYDAAAIAEPLAPTTAERYRRARSTNSKYTQEIPGQGKVQGLNRPRDGGYYDDA 227

Query: 185 LIPICSGSERLR---NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
           L+P       +        +  H    P  L    +++    G I++DPFFGSGT+G  A
Sbjct: 228 LMPTTRNKRDVWLINTVPYKGAHFAAFPPKLAETCILAGCPKGGIVIDPFFGSGTTGFAA 287

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASV 268
           K L R +IGIE+  +Y  +A  RI   
Sbjct: 288 KSLDRHYIGIELNAEYCALARARIGGA 314


>gi|326783510|ref|YP_004323987.1| DNA adenine methylase [Synechococcus phage Syn19]
 gi|310005013|gb|ADO99403.1| DNA adenine methylase [Synechococcus phage Syn19]
          Length = 270

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 61/272 (22%), Positives = 99/272 (36%), Gaps = 45/272 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I   + +  +++L   S+D I   PPYNL +    Y  +                 + Y 
Sbjct: 10  IYLKDCLEGMKELEDGSIDAIITSPPYNLNIKYGRYSDNKPR--------------QEYL 55

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNI-----------FRIGTMLQNLNFWILNDIVW 131
           ++        +R+L  +G L+V   Y NI            R   +LQN   W+ +  V 
Sbjct: 56  SWLVDIFREAKRILADDGHLFVNMGYSNIDPWIGMEVGLALREDWILQNHINWVKSIHVN 115

Query: 132 RKSNP--MPNFRGRRFQNAHETLIWASPSPKAKGY-------TFNYDALKAANEDVQMRS 182
            K++    P    R      E L   +     +            Y+A    N   + + 
Sbjct: 116 GKTSGHFKPINSKRFVCPTWEHLFHFTKDGNVEIDRLSVGVQYEYYEANIRGNNTAETKP 175

Query: 183 D-------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
           +       W +P     E + +K+    HP   P  L    L  + K   I LDPF G+G
Sbjct: 176 NLRDKGNCWFVPY----ETINSKELRGKHPATFPVKLAEDCLKLTGKDTGIALDPFMGTG 231

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           T+   A+ L    IG ++ +DYI  A  R+  
Sbjct: 232 TTAVAAQILGWDCIGYDIDEDYIKFANNRLNQ 263


>gi|327314476|ref|YP_004329913.1| DNA (cytosine-5-)-methyltransferase [Prevotella denticola F0289]
 gi|326945918|gb|AEA21803.1| DNA (cytosine-5-)-methyltransferase [Prevotella denticola F0289]
          Length = 429

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 67/303 (22%), Positives = 117/303 (38%), Gaps = 49/303 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF-SSF 78
           K  +I G+S   + +L  +SV LI   PPY              L D  T++   F + +
Sbjct: 6   KHIVINGDSRQ-MSELEDESVHLIVTSPPY------------WQLKDYGTENQIGFHNDY 52

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLW-VIGS------YHNIFRIGTM-------LQNLNFW 124
           E Y          C RVL     L   IG       Y+  ++I  +        + +   
Sbjct: 53  ETYINHLNLVWKECFRVLHKGCRLCINIGDQFARSTYYGRYKIIPIHTEIIKFCETIGLD 112

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAH------------ETLIWASPSPKAKGYTFNYDALK 172
            +  I+W+K   M    G     ++            E ++       A          +
Sbjct: 113 FMGQIIWQKVTTMNTSGGANIMGSYPNPRNGIVKLDFEYILLFKKQGNAPK------PSR 166

Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
              E+  M ++      +G         +K H    PE L  R++   + PG+ +LDPF 
Sbjct: 167 EQKENSIMTNEEWNTYFNGHWYFPGAKQDK-HLAMFPEELPHRLIKMFSFPGETVLDPFM 225

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL 292
           GSGT+   A+ L R+ +G E+ QD+I I  +RI +      +E+ ++  K+   ++ F  
Sbjct: 226 GSGTTALAARNLNRNSVGYEINQDFIPIIRERIENNDVFTEVEMEII--KQPALKIDFKQ 283

Query: 293 LVE 295
            ++
Sbjct: 284 RIK 286


>gi|318057431|ref|ZP_07976154.1| DNA methylase [Streptomyces sp. SA3_actG]
 gi|318075992|ref|ZP_07983324.1| DNA methylase [Streptomyces sp. SA3_actF]
          Length = 252

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 62/258 (24%), Positives = 96/258 (37%), Gaps = 35/258 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE-- 79
            +  G+++++L  L    VD +  DPPYN        R   +  +       +   F+  
Sbjct: 6   TLHHGDALTLLPTL-INPVDAVICDPPYNSGGRTMTARTARTAREKYLTEGGRLHGFDLG 64

Query: 80  ----------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
                     AY ++    L  C R+ +P G   V   +  +      LQ   +      
Sbjct: 65  TFTGDNRDQRAYTSWLSQILAHCYRLTRPGGAALVFTDWRQLAATTDALQAAGYTWRGIA 124

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
           VW K    P     R +   E ++W S      G    Y                     
Sbjct: 125 VWLKPIARPQPG--RLKQDSEFIVWGSAGAMIPGTDPVYLPGHFTGSQP----------- 171

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
                   +   + H TQKP  ++ +++  +  PG  +LDPF GSGT+GA A    RSFI
Sbjct: 172 --------RGKARQHITQKPLDVMQQLVRIA-PPGGTVLDPFAGSGTTGAAALTEGRSFI 222

Query: 250 GIEMKQDYIDIATKRIAS 267
           GIE    Y ++A  R+AS
Sbjct: 223 GIEQSASYAEVARARLAS 240


>gi|270265405|ref|ZP_06193665.1| hypothetical protein SOD_n00250 [Serratia odorifera 4Rx13]
 gi|270040660|gb|EFA13764.1| hypothetical protein SOD_n00250 [Serratia odorifera 4Rx13]
          Length = 214

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 62/240 (25%), Positives = 97/240 (40%), Gaps = 43/240 (17%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           + G+S+ V+   PA S+D I  DPPY +   G   R   S+ +     W   +S E +  
Sbjct: 5   VLGDSVQVMSTFPAASIDFILTDPPYLV---GFTDRTGRSIANDTNGDWVLPASREMF-- 59

Query: 84  FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNFRG 142
                     RVLKPN  +     ++ +    +  +   F I+  +V+ K       F G
Sbjct: 60  ----------RVLKPNSLMVSFYGWNRVDAFVSAWKAAGFRIVGHLVFTKHYASKSAFVG 109

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
            + +NA+       P P                               G  +     G +
Sbjct: 110 YQHENAYILAKGRPPLPAQPL---------------------------GDVQSWEYTGNR 142

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HPT+KP + L  ++ S T+PG I+LDPF GSG++   A +  R +IGIE+  DY     
Sbjct: 143 HHPTEKPVSSLQPLIESFTQPGAIVLDPFAGSGSTCVAAAQAGRRYIGIELLPDYHSTGC 202


>gi|325679434|ref|ZP_08159018.1| DNA (cytosine-5-)-methyltransferase [Ruminococcus albus 8]
 gi|324108862|gb|EGC03094.1| DNA (cytosine-5-)-methyltransferase [Ruminococcus albus 8]
          Length = 361

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 65/254 (25%), Positives = 107/254 (42%), Gaps = 28/254 (11%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
             ++ ++L KL  +S D+I  DPPY +   G   +     + +  D       F+  D  
Sbjct: 134 HADAKTILNKLKTESFDMILTDPPYRVISGGTGGKNAPRGMLSKNDG----KIFDNNDIQ 189

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
              ++  C RVLKP+   +   ++ N+  +   +Q   F I N +VW K+N  P    R 
Sbjct: 190 FDEYIPECYRVLKPDRQAYFFTNFLNLQPLMEAVQRAGFKIHNLLVWLKNNATP---NRW 246

Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
           +    E +++               A   +N                  +  N  G+KLH
Sbjct: 247 YMKNCEYVLFCYKGK----------AKAISNCG-----------SKTVHQFDNIKGQKLH 285

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            T+KP  LL   + +ST+ GD ILDPF GSG++ A +  L R     E+ + Y++    R
Sbjct: 286 ETEKPVELLKMYIENSTEEGDWILDPFAGSGSTMAASLLLNRKVFTCEIDKKYLETIKNR 345

Query: 265 IASVQPLGNIELTV 278
             S+   G  E  +
Sbjct: 346 AISIIKNGTDERAL 359


>gi|295091551|emb|CBK77658.1| DNA modification methylase [Clostridium cf. saccharolyticum K10]
          Length = 319

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 65/324 (20%), Positives = 109/324 (33%), Gaps = 91/324 (28%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            D II  +++  L +LP++SV      PPY    +             +T    +  + E
Sbjct: 6   TDTIINRDALYALRELPSESVHCAVTSPPYYALRDY-----------GLTMQIGREDTPE 54

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI---------------------------- 111
            Y           RRVL+P+GTLW+  +                                
Sbjct: 55  EYIRRLTVIFRELRRVLRPDGTLWLNIADTYCGTGSKGSSTDPKNPKGRNGQSVSIARKA 114

Query: 112 ------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
                       + +   L++  +++ +DI+W+K NPMP     R    +E +   +   
Sbjct: 115 AGIKQKDLIGIPWLLAFSLRSDGWYLRSDIIWQKENPMPESCKDRPTRCYEHIFLLTKE- 173

Query: 160 KAKGYTFNYDALKAA----------------------------------NEDVQMRSDWL 185
             K Y ++  A+                                             D L
Sbjct: 174 --KKYYYDAAAIAEPISPKTAARYRLGRSANSKYAAEIPGQGKVQGLNRARSGGYYDDAL 231

Query: 186 IPICSG---SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           +P          +     +  H    P  L    +++    G ++LDPFFGSGT+G  AK
Sbjct: 232 MPTTRNRRDVWTINTVPYKGGHFAAFPPKLAETCILAGCPKGGVVLDPFFGSGTTGLAAK 291

Query: 243 KLRRSFIGIEMKQDYIDIATKRIA 266
            L R ++GIE+  +Y  +A  RI 
Sbjct: 292 SLDRHYVGIEINAEYCALARARIG 315


>gi|162447456|ref|YP_001620588.1| DNA modification methylase [Acholeplasma laidlawii PG-8A]
 gi|161985563|gb|ABX81212.1| DNA modification methylase, putative [Acholeplasma laidlawii PG-8A]
          Length = 292

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 102/266 (38%), Gaps = 35/266 (13%)

Query: 21  DKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +++ G+S     V + +    +DL+F DPPYN+   G   +  +          DK   
Sbjct: 45  HRVMCGDSTEKTDVKKLIQDDRIDLVFTDPPYNVDYEGTAGKIMN----------DKMED 94

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
              Y  F            KP G ++V  +           +N  + +   ++W K+  +
Sbjct: 95  NTFYL-FLYKAFENMFEHTKPGGAIYVCHADTEGLNFRNAFKNAGYKLAECLIWVKNALV 153

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
              +   ++  HE +++      A  +  +         +   R                
Sbjct: 154 LGRQDYHWR--HEPILYGWREGAAHYFVDDRTQDTIWEYNKPKR---------------- 195

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
               + HPT KP  L+ + + +S++  +I+LD F GSG++   + +L+R    +E+ + +
Sbjct: 196 ---NEEHPTMKPLELVGKAIANSSRVNEIVLDLFGGSGSTMIASDQLQRRARIMELDERF 252

Query: 258 IDIATKRIASVQPLGNIELTVLTGKR 283
           +D+  KR    +   +    +  GK 
Sbjct: 253 VDVIVKRYLKYKVSLDDCYLIRNGKE 278


>gi|167821700|ref|ZP_02453380.1| site-specific DNA methyltransferase [Burkholderia pseudomallei 91]
          Length = 235

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 98/249 (39%), Gaps = 32/249 (12%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDA-----VTDSWDKFSS 77
            +++++   LP  S+D++F DPPY    L  + +   P    +++      TD       
Sbjct: 1   MDALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSTKYINSDTKTVYTDFESDNMD 60

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
             A+  +  AWL  CRR LKP G L     +  +  +  ++Q     +    VW K+   
Sbjct: 61  QRAWAFWCHAWLSECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILRGVAVWDKTPGR 120

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
              R   F    E ++W               A + A  D ++    + P          
Sbjct: 121 TRPRRGGFAQQAEFVVW---------------ASRGAMRDCEVYLPGVFP--------CR 157

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
               K H T+KP   ++R +V     G ++ D F GSGT  A A++    +IG E    Y
Sbjct: 158 LPLPKQHVTEKPLD-IAREVVRLVPAGGVVCDLFAGSGTFLAAAREAGLHWIGCETNAAY 216

Query: 258 IDIATKRIA 266
             IA  R+ 
Sbjct: 217 HAIALHRLG 225


>gi|46581282|ref|YP_012090.1| adenine specific DNA methyltransferase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46450703|gb|AAS97350.1| adenine specific DNA methyltransferase, putative [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311234947|gb|ADP87801.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio vulgaris RCH1]
          Length = 452

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 103/275 (37%), Gaps = 40/275 (14%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +++ G+S     V+  +  +  D+++ DPPYN+  +G+  +  +          DK  S
Sbjct: 166 HRLLCGDSTSVEDVVRLMAGEQADMLWTDPPYNVDYSGKAGKIRN----------DKM-S 214

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF-RIGTMLQNLNFWILNDIVWRKSNP 136
            E +DAF    L      L      +V  S             +  + + + ++WRK   
Sbjct: 215 PEDFDAFLLRLLSRSYEALADGAAAYVAHSEAGGGTAFRKAFAHAGYKLASCLIWRKHQL 274

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS------DWLIPICS 190
           +       +Q  HE +++         +  N                      W +    
Sbjct: 275 VLGRGDYHWQ--HEPILYGWKPTGKHRWYGNRKHTTLLEHFAGQTVLPAGEGVWQVATGD 332

Query: 191 GSERLRNKD-----------------GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
               +R +D                   +LHPT KP AL+ R++ +S+  G ++LDP  G
Sbjct: 333 AVLLIRGQDVTVEEVSTSILAVAKPARSELHPTMKPVALVERMVANSSPRGGLVLDPCGG 392

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           SGT+    +++ R    +E+   + D+  +R   V
Sbjct: 393 SGTTLIACERMGRRCNTMELDPRFADVIVRRWEEV 427


>gi|46578609|ref|YP_009417.1| adenine specific DNA methyltransferase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46448020|gb|AAS94676.1| adenine specific DNA methyltransferase, putative [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 452

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 103/275 (37%), Gaps = 40/275 (14%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +++ G+S     V+  +  +  D+++ DPPYN+  +G+  +  +          DK  S
Sbjct: 166 HRLLCGDSTSVEDVVRLMAGEQADMLWTDPPYNVDYSGKAGKIRN----------DKM-S 214

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF-RIGTMLQNLNFWILNDIVWRKSNP 136
            E +DAF    L      L      +V  S             +  + + + ++WRK   
Sbjct: 215 PEDFDAFLLRLLSRSYEALADGAAAYVAHSEAGGGTAFRKAFAHAGYKLASCLIWRKHQL 274

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS------DWLIPICS 190
           +       +Q  HE +++         +  N                      W +    
Sbjct: 275 VLGRGDYHWQ--HEPILYGWKPTGKHRWYGNRKHTTLLEHFAGQTVLPAGEGVWQVATGD 332

Query: 191 GSERLRNKD-----------------GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
               +R +D                   +LHPT KP AL+ R++ +S+  G ++LDP  G
Sbjct: 333 AVLLIRGQDVTVEEVSTSILAVAKPARSELHPTMKPVALVERMVANSSPRGGLVLDPCGG 392

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           SGT+    +++ R    +E+   + D+  +R   V
Sbjct: 393 SGTTLIACERMGRRCNTMELDPRFADVIVRRWEEV 427


>gi|307288953|ref|ZP_07568923.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0109]
 gi|306500096|gb|EFM69443.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0109]
          Length = 260

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 62/280 (22%), Positives = 108/280 (38%), Gaps = 53/280 (18%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   + +  ++++  KS+D+I  D PY                    + WD    F+ 
Sbjct: 4   NKIYNEDCLEGMKRISDKSIDMILCDLPYGT----------------TDNKWDVIIPFD- 46

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                + W     R++K +G + + GS    F    ++ N       + +W K+     F
Sbjct: 47  -----KLW-EQYERIIKDSGAIVLTGS--QPFTTDIIMSNRKL-FRYEWIWNKNQASNFF 97

Query: 141 RGRRFQ-NAHETLI-WASPSPKA-----------------KGYTF------NYDALKAAN 175
              +     HE ++ +    P                   +GY +      NY+      
Sbjct: 98  MANKMPLKVHENILVFYKKLPTYNKQMIPRTNPSVAIAQERGYVYDGAKSDNYNISTVKM 157

Query: 176 EDVQMRSDWLIPIC--SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
                  +W  PI   + ++   N +    HPTQKP AL   ++ + T  G+I+LD   G
Sbjct: 158 SPKGYDKNWKNPISILNINQLKNNSNERCGHPTQKPVALFEHLIKTYTNEGEIVLDNCIG 217

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           SGT+   A    R FIG E +++Y D+A +RI       +
Sbjct: 218 SGTTAVAAINTNRQFIGFEKEKEYFDVAIERIKKASEEDD 257


>gi|291166224|gb|EFE28270.1| DNA (cytosine-5-)-methyltransferase [Filifactor alocis ATCC 35896]
          Length = 341

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 65/350 (18%), Positives = 117/350 (33%), Gaps = 91/350 (26%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
           E+ + +  + + I+ G+++  L K P + ++     PPY    +               +
Sbjct: 6   EHTSFLDSYINTILCGDALETLRKFPDEIINTCITSPPYYGLRDYHK-----------KE 54

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN-------------------- 110
              +  + E Y     A     RRVLK  GT +++                         
Sbjct: 55  QIGREKTVEEYLDRLVAVFREVRRVLKSGGTCFIVIGDSYAGSGGGKGQYMDPKYPKKRN 114

Query: 111 ---------------------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAH 149
                                 +R+  +L+   +++ +DI+W K N MP     R   ++
Sbjct: 115 GQNPSITQKVLGYKAKDLMGIPWRLALLLREDGWYLRSDIIWHKENAMPEACRDRPTRSY 174

Query: 150 ETLIWASPSPKAKGYTFNYDALKAANE--------------DVQMRSDWLIPICSGS--- 192
           E +   S SP    Y ++Y+ +    +              +  ++ D  I +   +   
Sbjct: 175 EHVFLLSKSP---RYYYDYEQMAEPMKEVSKKRYVRGRSEDNKYLKEDAGISVQKINKAR 231

Query: 193 -------------------ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
                                +        H    P  L    +++      IILDPF G
Sbjct: 232 KYGQYKGDNIPQFRNKRDIWTINTVSFRGNHYAVFPPKLAEICMIAGCPKDGIILDPFIG 291

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
           SGT G VA    R +IGIE+ ++Y  +A KRI+      + E      K 
Sbjct: 292 SGTVGFVALMQDRKYIGIELNEEYCKLARKRISEEVEKIDKEKEYEVCKE 341


>gi|332305440|ref|YP_004433291.1| DNA methylase N-4/N-6 domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172769|gb|AEE22023.1| DNA methylase N-4/N-6 domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 218

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 57/246 (23%), Positives = 105/246 (42%), Gaps = 29/246 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++ + +++  L+ LPA SVDL+  DPPY      +       L  + + S D F+ F   
Sbjct: 2   RLFQLDAVEWLQSLPANSVDLVITDPPYESLEKHRAKGTTTRLKHSKSSSNDWFAIFP-- 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           +A   A +    RVLK N   ++      +F I  + +   F     +VW K        
Sbjct: 60  NARFVALVEEIYRVLKNNSHFYLFCDQETMFEIKPLAEAAGFKFWKPLVWDKC---AIGM 116

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G  ++  +E +++     +                      D  +P       L+ K   
Sbjct: 117 GYHYRARYEFILFFEKGKRKL-------------------QDLGMPDV-----LQEKRVW 152

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           + +PT+KP  L+ +++  S+  G +++DPFFGSG +   A+ L R + G ++     + A
Sbjct: 153 RGYPTEKPVPLIEKLIGQSSTAGQLVIDPFFGSGATLVAAQNLNREWQGADVAPSAHEHA 212

Query: 262 TKRIAS 267
            KR+ +
Sbjct: 213 AKRLKA 218


>gi|3687316|emb|CAA05163.1| methylase [Lactococcus lactis]
          Length = 296

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 62/293 (21%), Positives = 108/293 (36%), Gaps = 46/293 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG-------------------QLYRPD 61
           D I   NSI  ++K+  +S+ LI +D PY +                             
Sbjct: 4   DTIYNENSIDSIKKIETESIHLILSDIPYGISFADWDILHENTNSALGGSSPAQHKTGSG 63

Query: 62  HSLVDAVTDSW---DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
             +     + W   D+    E Y  +  +W     RVLKP  + ++        R    L
Sbjct: 64  FKMRGKPINGWSEADRKIPLE-YQNWVESWAKEWFRVLKPGSSCFIFAGRRYAHRAIVGL 122

Query: 119 QNLNFWILNDIVWRKSNP----------------------MPNFRGRRFQNAHETLIWAS 156
           +N  F   + I W +S                        +  +R    +   E ++W +
Sbjct: 123 ENSGFTFRDMIGWNRSKATLKAQRISKVYERRNDFENAEKLSEWRVGNLRPVFEPILWFT 182

Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK-LHPTQKPEALLSR 215
              K  G   +             +             + N   ++ LHPTQKP  L+  
Sbjct: 183 KPYKQGGTIADNMLKHGVGAYNLEKWQTFSEKGDNYIEIPNLSSDRGLHPTQKPLVLMKA 242

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           ++  +T+   I+LDPF GSGT+   AK+L R ++G E+ +DY + +  R+ ++
Sbjct: 243 LIELTTQENQIVLDPFSGSGTTLVAAKELNRHYLGFEIDKDYYNTSLNRLNTL 295


>gi|15674743|ref|NP_268917.1| phage associated protein [Streptococcus phage 370.1]
 gi|94992071|ref|YP_600170.1| chromosome partitioning protein parB / adenine-specific
           methyltransferase [Streptococcus phage 2096.1]
 gi|13621867|gb|AAK33638.1| conserved hypothetical protein, phage associated [Streptococcus
           phage 370.1]
 gi|94545579|gb|ABF35626.1| Chromosome partitioning protein parB / Adenine-specific
           methyltransferase [Streptococcus phage 2096.1]
          Length = 388

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 100/251 (39%), Gaps = 32/251 (12%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            K++ G+S     V + +  +  DL+  DPPYN+   G+         D++T   D    
Sbjct: 158 HKLMCGDSTNGADVKKLMNGELADLLLTDPPYNVAYEGKT-------KDSLTIKNDSM-D 209

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            +++  F      +   V+KP    ++  +    +       ++ + +   ++W K++ +
Sbjct: 210 NDSFRQFLVNAFSSANEVMKPGAVFYIWHADSEGYNFRGACFDIGWTVRQCLIWNKNSMV 269

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
              +   ++  HE  ++         +        A++       D+  P  +G      
Sbjct: 270 LGRQDYHWK--HEPCLYGWKDGAGHLW--------ASDRKQTSVIDYEKPQRNG------ 313

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
                +HPT KP  L    + ++TK  DI+LD F GSGT+    +   R    +E    Y
Sbjct: 314 -----VHPTMKPVGLFDYQIKNNTKGSDIVLDLFGGSGTTLIACESNGRHARLMEYDPKY 368

Query: 258 IDIATKRIASV 268
           +D+  KR   +
Sbjct: 369 VDVIIKRWEEL 379


>gi|220930514|ref|YP_002507423.1| DNA methylase N-4/N-6 domain protein [Clostridium cellulolyticum
           H10]
 gi|220000842|gb|ACL77443.1| DNA methylase N-4/N-6 domain protein [Clostridium cellulolyticum
           H10]
          Length = 359

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 73/355 (20%), Positives = 117/355 (32%), Gaps = 109/355 (30%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQL---------YRPDHSLVDAVTDS 71
           +KI   + +  L+ L   +VD     PPY    +  L         Y P   L +     
Sbjct: 4   NKIYNMDCLQGLKLLEQNTVDCCVTSPPYYGLRDYGLPETLWPEVEYSPLPGLPEINITE 63

Query: 72  WDK----FSSFEAYDAFTRAWLLACRRVLKPNGTLW-VIGSYH----------------- 109
           W        + E +            R LK +GT W   G  +                 
Sbjct: 64  WKGCLGLEPTIEMFIGHIVLIFREVYRTLKKSGTCWVNFGDSYVGTGGDRKNPVQNELFN 123

Query: 110 ------------------------------NIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                                           +R+   LQ   +++  DI+W K N MP 
Sbjct: 124 LQQSHTPGDGRYCRNKTLKKSGLKVKDMMGIPWRVAFALQADGWYLRMDIIWNKLNCMPE 183

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA-------------------ANEDVQM 180
               R   AHE L   S     K Y F+ +++K                     N+  + 
Sbjct: 184 SANDRPTKAHEYLFLLSKD---KNYYFDNESIKEYCVNGDPNPPRGSEGVLGNPNKGRRG 240

Query: 181 RSDWLIPIC----------------SGSERLRNKDG---------EKLHPTQKPEALLSR 215
             +W I                   +G +  RNK            + H    P  L+  
Sbjct: 241 PGNWKIKSVGLPGESANRGTPSVPVAGKKEFRNKRSVWHVATDKLREAHFATFPPKLIEP 300

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK-RIASVQ 269
            +++    G  +LD F GSGT+  VA++  R++IG E+  +YI+IA + R+++VQ
Sbjct: 301 CIIAGCPVGGTVLDIFMGSGTTAMVAEQNNRNYIGFELNPEYIEIANRTRLSNVQ 355


>gi|328954500|ref|YP_004371834.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
           11109]
 gi|328454824|gb|AEB10653.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
           11109]
          Length = 302

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 58/276 (21%), Positives = 96/276 (34%), Gaps = 51/276 (18%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I G++   L  L  +S+ L+   PPY           +    +   D    F ++E 
Sbjct: 6   HRLINGDARD-LSFLEDESIHLVVTSPPY----------WNLKHYNENPDQLGHFKNYET 54

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR--------------IGTMLQNLNFWIL 126
           +            RV  P G L  +     + R              I    + + F  L
Sbjct: 55  FLNELEKVWRQVFRVFVPGGRLVCVVGDVCVARRAFGRHLVFPLHADICVTCRKIGFDNL 114

Query: 127 NDIVWRK--------SNPMPNFRGRR-----FQNAHETLIWASPSPKAKG---YTFNYDA 170
           N I+W K        +N               +N  E ++        +    Y  N   
Sbjct: 115 NPIIWHKIANASYEVANGSKFLGKPYEPNAIIKNDMEFILMQRKPGGYRKPSDYQRNESK 174

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
           +     +   +  W IP  S           + HP   P  L +R++   +   D +LDP
Sbjct: 175 ISKEKFNQWFKQIWHIPGAST----------RHHPAPFPLELATRLIRMFSFVNDTVLDP 224

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           F GSGT+   A + +R+ IGIE+  DY  +A K + 
Sbjct: 225 FCGSGTTMIAAMRTKRNSIGIEVDPDYCKLAAKYLK 260


>gi|162329641|ref|YP_469489.2| DNA-methyltransferase protein (hemagglutinin-associated protein)
           [Rhizobium etli CFN 42]
          Length = 214

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 55/248 (22%), Positives = 103/248 (41%), Gaps = 41/248 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           ++ I+ G+ ++++++L   SVD I  DPPY ++   +  R   +  +AV           
Sbjct: 5   RNTILYGDCMTLMQRLQGGSVDFILTDPPYLVRYRDRRGRTVANDNNAV----------- 53

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
               + +       RVLKP         ++++ R     +   F ++  +V+ KS     
Sbjct: 54  ----WLKPAFAEMHRVLKPGRLAVSFYGWNHVDRFMEAWRKAGFRVVGHLVFVKSYASSQ 109

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
              R     HE             Y           + +     W               
Sbjct: 110 RFVRYH---HEQA-----------YVLAKGDAAPPAQPIADVLPWDY------------T 143

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G ++HPTQKP   L +I+ + +KPG+++LDPF GSG++   A +  R ++G+E++  +  
Sbjct: 144 GNRMHPTQKPLRPLEQIIRAFSKPGELVLDPFCGSGSTLLAAARSGRDYLGMELEHRHQL 203

Query: 260 IATKRIAS 267
            A+ R+ S
Sbjct: 204 TASLRVHS 211


>gi|291550363|emb|CBL26625.1| DNA modification methylase [Ruminococcus torques L2-14]
          Length = 319

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 65/326 (19%), Positives = 108/326 (33%), Gaps = 91/326 (27%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            D II  +++  L++LP++SV      PPY    +             +     +  + E
Sbjct: 3   TDVIINRDALCALQELPSESVHCCVTSPPYFALRDY-----------GLDAQIGQEDTPE 51

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI---------------------------- 111
            Y     +      RVL+ +GTLW+  +                                
Sbjct: 52  QYIDRLTSVFRELYRVLRKDGTLWLNIADTYCGTGNKGGYADPKNPKGRTGQRIARNSRV 111

Query: 112 ------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
                       + +   L+   +++ +DI+W+K NPMP     R    +E +   S   
Sbjct: 112 TGCKQKDLIGIPWLLAFSLREQGWYLRSDIIWQKQNPMPESCKDRPTRCYEHIFLLSKE- 170

Query: 160 KAKGYTFNYDALKAA----------------------------------NEDVQMRSDWL 185
             K Y ++  A+                                       D     D L
Sbjct: 171 --KKYYYDAAAIAEPLAPTTAERYRRARSTNSKYTQEIPGQGKVQGLNRPRDGGYYDDAL 228

Query: 186 IPICSGSERLR---NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           +P       +        +  H    P  L    +++    G I++DPFFGSGT+G  AK
Sbjct: 229 MPTTRNKRDVWLINTVPYKGAHFAAFPPKLAETCILAGCPKGGIVIDPFFGSGTTGFAAK 288

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASV 268
            L R +IGIE+  +Y  +A  RI   
Sbjct: 289 SLDRHYIGIELNAEYCALARARIGGA 314


>gi|313813458|gb|EFS51172.1| DNA (cytosine-5-)-methyltransferase [Propionibacterium acnes
           HL025PA1]
 gi|315106866|gb|EFT78842.1| DNA (cytosine-5-)-methyltransferase [Propionibacterium acnes
           HL030PA1]
          Length = 416

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 93/254 (36%), Gaps = 38/254 (14%)

Query: 20  KDKIIKGNS-----ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           + +++ G++     I +L  +  K  +L+  DPPYN+              D ++   DK
Sbjct: 166 RHRLVCGDATNAGDIELL--MDGKKANLVLTDPPYNVAFESS---------DGLSIKNDK 214

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            S+ +A+  F  A       V +   + +V  +           Q+  F +    +W K 
Sbjct: 215 MSA-DAFYEFLLAAFTQMAGVCEKGASAYVFHADTEGLNFRRAFQDAGFKLSGCCIWVKD 273

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           + +       +Q  HE +++         +  +         D   R             
Sbjct: 274 SLV--LGRSPYQWQHEPVLYGWVKTGKHTWYADRKQTTVWRFDKPRR------------- 318

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                    HPT KP  LL+  + +ST+   I+LD F GSG++    +   R    +E+ 
Sbjct: 319 ------NADHPTSKPLDLLAYPIGNSTQANAIVLDTFAGSGSTLMACEATNRIAYCMELD 372

Query: 255 QDYIDIATKRIASV 268
           + Y  +  +R A  
Sbjct: 373 EKYASVILRRYADA 386


>gi|291521502|emb|CBK79795.1| DNA modification methylase [Coprococcus catus GD/7]
          Length = 270

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/268 (20%), Positives = 94/268 (35%), Gaps = 32/268 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP--------DHSLVDAVTDSWD 73
           +I+ G+++ +++       D +  DPPY      Q  R              +A+ D   
Sbjct: 27  RILHGDTLKLVKGFQPGIFDAVITDPPYASGGTKQNERNRTTNQKYSSMKAENALPDFDG 86

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                 ++  +   WL   R+  K    + +   +     I   LQ   +      VW K
Sbjct: 87  DNKDQRSWTHWMAEWLYDVRKACKRGAPICLFIDWRQYPSITDALQWAGWIWRGTAVWDK 146

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
            N  P     RF+   E ++W S  P                       +  +    G  
Sbjct: 147 GNSRPQ--KGRFRQQAEYIVWGSNGPM--------------------PINRPVSCLPGVF 184

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           R  N    ++H T+KP  L+  ++    +PG +ILDPF G+GT+   A +     +GIE+
Sbjct: 185 RYGNPQ-NRIHVTEKPLQLMKDVIQI-CEPGGLILDPFAGAGTTILAAAESGFQAVGIEV 242

Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTG 281
              Y  + + R+      G         
Sbjct: 243 TDAYYKLGSDRVRIALEAGEEAENKEPQ 270


>gi|262377930|ref|ZP_06071137.1| DNA methylase [Acinetobacter lwoffii SH145]
 gi|262307142|gb|EEY88298.1| DNA methylase [Acinetobacter lwoffii SH145]
          Length = 304

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 61/278 (21%), Positives = 94/278 (33%), Gaps = 49/278 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +II G+ + +L+ LP  SVDLI   PPY  Q                          E Y
Sbjct: 8   QIINGDCLEMLKLLPDNSVDLIITSPPYADQRKSTYGGVKP----------------EQY 51

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIG--------SYHNIFRIGTMLQNLNFWILNDIVWRK 133
             +         RVLK +G+  +           +  +  +   L+   +    + VW K
Sbjct: 52  VEWFLPIAQQLLRVLKQSGSFVLNIKEKVVNGERHTYVLELILALKKQGWLWTEEYVWHK 111

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM------------- 180
            N  P     RF++  E  +  + + K   Y           +  +M             
Sbjct: 112 KNSFPGKWPNRFRDGWERCLHFNKTKKFNMYQETVMVPMGDWKKTRMKKLSKTDMQRDES 171

Query: 181 ------------RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
                         D  +               + H    P+ L +  +   +K GDIIL
Sbjct: 172 KVGSGFGKNISNWIDRDMAYPDNVLHFATVCNNRNHSAAFPDELPAWFINLFSKEGDIIL 231

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           DPF GSGTS  VA  L R  IGIE+ + Y   + + + 
Sbjct: 232 DPFSGSGTSVRVATNLGRVGIGIEILETYARESAENLG 269


>gi|324015250|gb|EGB84469.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 60-1]
          Length = 193

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 93/233 (39%), Gaps = 43/233 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +       R   ++   V D W + +S E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RSGRTIAGDVNDDWLQPASNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R     +   F +   +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKRAGFSVAGHLVFTKNYTSKSAY 107

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
              R + A+                          +    R    +P   G +      G
Sbjct: 108 VAYRHECAY-----------------------ILAKGSPARPRNPLPDVLGWKY----SG 140

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
            + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+
Sbjct: 141 NRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIEL 193


>gi|293400157|ref|ZP_06644303.1| DNA (cytosine-5-)-methyltransferase [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306557|gb|EFE47800.1| DNA (cytosine-5-)-methyltransferase [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 319

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 64/326 (19%), Positives = 107/326 (32%), Gaps = 91/326 (27%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            D II  +++  L +LP +SV      PPY    +             +     +  + E
Sbjct: 6   TDTIINRDALYALRELPEESVHCCVTSPPYYALRDY-----------GLDMQIGREDTPE 54

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI---------------------------- 111
            Y           RRVL+ +GTLW+  +                                
Sbjct: 55  QYIDRLTEVFRELRRVLRSDGTLWLNIADTYCGTGNKGYHADPKNPKGRNGQQIARNNRV 114

Query: 112 ------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
                       + +   L+   +++ +DI+W+K NPMP     R    +E +   +   
Sbjct: 115 SGCKQKDLIGIPWLLAFALRADGWYLRSDIIWQKENPMPESVKDRPTRCYEHIFLLTK-- 172

Query: 160 KAKGYTFNYDALKAA----------------------------------NEDVQMRSDWL 185
            +K Y ++  A+                                             + L
Sbjct: 173 -SKKYFYDAAAIAEPLAPTTAARYRTGRSAGQKYADEVPGQGNVQGLNRARSGSYYDEAL 231

Query: 186 IPICSGSERLR---NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           +P       +        +  H    P  L    + +    G ++LDPFFGSGT+GA AK
Sbjct: 232 MPTMRNRRDVWLINTVPYKGGHFAAFPPKLAETCIKAGCPKGGVVLDPFFGSGTTGAAAK 291

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASV 268
           +L R +IGIE+  +Y  +A  RI   
Sbjct: 292 QLDRHYIGIEINAEYCALARARIGGT 317


>gi|153852763|ref|ZP_01994200.1| hypothetical protein DORLON_00182 [Dorea longicatena DSM 13814]
 gi|160894987|ref|ZP_02075761.1| hypothetical protein CLOL250_02537 [Clostridium sp. L2-50]
 gi|149754405|gb|EDM64336.1| hypothetical protein DORLON_00182 [Dorea longicatena DSM 13814]
 gi|156863418|gb|EDO56849.1| hypothetical protein CLOL250_02537 [Clostridium sp. L2-50]
          Length = 273

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/268 (20%), Positives = 94/268 (35%), Gaps = 32/268 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP--------DHSLVDAVTDSWD 73
           +I+ G+++ +++       D +  DPPY      Q  R              +A+ D   
Sbjct: 30  RILHGDTLKLVKGFQPGIFDAVITDPPYASGGTKQNERNRTTNQKYSSMKAENALPDFDG 89

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                 ++  +   WL   R+  K    + +   +     I   LQ   +      VW K
Sbjct: 90  DNKDQRSWTHWMAEWLYDVRKACKRGAPICLFIDWRQYPSITDALQWAGWIWRGTAVWDK 149

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
            N  P     RF+   E ++W S  P                       +  +    G  
Sbjct: 150 GNSRPQ--KGRFRQQAEYIVWGSNGPM--------------------PINRPVSCLPGVF 187

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           R  N    ++H T+KP  L+  ++    +PG +ILDPF G+GT+   A +     +GIE+
Sbjct: 188 RYGNPQ-NRIHVTEKPLQLMKDVIQI-CEPGGLILDPFAGAGTTILAAAESGFQAVGIEV 245

Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTG 281
              Y  + + R+      G         
Sbjct: 246 TDAYYKLGSDRVRIALEAGEEAENKEPQ 273


>gi|163816267|ref|ZP_02207634.1| hypothetical protein COPEUT_02455 [Coprococcus eutactus ATCC 27759]
 gi|166032412|ref|ZP_02235241.1| hypothetical protein DORFOR_02115 [Dorea formicigenerans ATCC
           27755]
 gi|167747571|ref|ZP_02419698.1| hypothetical protein ANACAC_02292 [Anaerostipes caccae DSM 14662]
 gi|167760843|ref|ZP_02432970.1| hypothetical protein CLOSCI_03231 [Clostridium scindens ATCC 35704]
 gi|210615450|ref|ZP_03290577.1| hypothetical protein CLONEX_02793 [Clostridium nexile DSM 1787]
 gi|283796271|ref|ZP_06345424.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. M62/1]
 gi|331088100|ref|ZP_08337021.1| DNA methylase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|158448462|gb|EDP25457.1| hypothetical protein COPEUT_02455 [Coprococcus eutactus ATCC 27759]
 gi|166028135|gb|EDR46892.1| hypothetical protein DORFOR_02115 [Dorea formicigenerans ATCC
           27755]
 gi|167652933|gb|EDR97062.1| hypothetical protein ANACAC_02292 [Anaerostipes caccae DSM 14662]
 gi|167661446|gb|EDS05576.1| hypothetical protein CLOSCI_03231 [Clostridium scindens ATCC 35704]
 gi|210150299|gb|EEA81308.1| hypothetical protein CLONEX_02793 [Clostridium nexile DSM 1787]
 gi|291076207|gb|EFE13571.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. M62/1]
 gi|291543122|emb|CBL16232.1| DNA modification methylase [Ruminococcus bromii L2-63]
 gi|330409056|gb|EGG88515.1| DNA methylase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 319

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 64/326 (19%), Positives = 107/326 (32%), Gaps = 91/326 (27%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            D II  +++  L +LP +SV      PPY    +             +     +  + E
Sbjct: 6   TDTIINRDALYALRELPEESVHCCVTSPPYYALRDY-----------GLDMQIGREDTPE 54

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI---------------------------- 111
            Y           RRVL+ +GTLW+  +                                
Sbjct: 55  QYIDRLTEVFRELRRVLRSDGTLWLNIADTYCGTGNKGYHADPKNPKGRNGQQIARNNRV 114

Query: 112 ------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
                       + +   L+   +++ +DI+W+K NPMP     R    +E +   +   
Sbjct: 115 SGCKQKDLIGIPWLLAFALRADGWYLRSDIIWQKENPMPESVKDRPTRCYEHIFLLTK-- 172

Query: 160 KAKGYTFNYDALKAA----------------------------------NEDVQMRSDWL 185
            +K Y ++  A+                                             + L
Sbjct: 173 -SKKYFYDAAAIAEPLAPTTAARYRTGRSAGQKYADEVPGQGNVQGLNRARSGSYYDEAL 231

Query: 186 IPICSGSERLR---NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           +P       +        +  H    P  L    + +    G ++LDPFFGSGT+GA AK
Sbjct: 232 MPTMRNRRDVWLINTVPYKGGHFAAFPPKLAETCIKAGCPKGGVVLDPFFGSGTTGAAAK 291

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASV 268
           +L R +IGIE+  +Y  +A  RI   
Sbjct: 292 QLDRHYIGIEINAEYCALARARIGGT 317


>gi|189500189|ref|YP_001959659.1| DNA methylase N-4/N-6 domain-containing protein [Chlorobium
           phaeobacteroides BS1]
 gi|189495630|gb|ACE04178.1| DNA methylase N-4/N-6 domain protein [Chlorobium phaeobacteroides
           BS1]
          Length = 293

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 63/287 (21%), Positives = 101/287 (35%), Gaps = 56/287 (19%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            E +  +  G+S   L+K+P  SVDLI   PPY  Q                        
Sbjct: 1   MEIRTDLYLGDSQEELKKIPDNSVDLIVTSPPYADQRKKTYGG----------------I 44

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIG---------SYHNIFRIGTMLQNLNFWILN 127
             + Y ++         RVLKP GT  +           S + +  I  M +   +    
Sbjct: 45  HPDHYVSWFLPIAEQLMRVLKPTGTFVLNIKEKVVNGERSTYVMELILEMRRQQGWLWTE 104

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ-------- 179
           + +W K N  P     RF+++ E LI  +    +K +  N +A+     +          
Sbjct: 105 EFIWHKKNCYPGKWPNRFRDSWERLIQFNK---SKQFYMNQEAVMVPMGEWSKTRLKNLS 161

Query: 180 --------------------MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVS 219
                                  D      +    L  +   K H    PE L    +  
Sbjct: 162 ETDKVRDESKVGSGFGKNISNWLDRKKAYPTNVLHLATECNNKKHSAAFPEGLPEWFIRL 221

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
            TK GD +LDPF GSGT+  VA +++R  IG+++  +Y  +    + 
Sbjct: 222 FTKEGDTVLDPFMGSGTTNIVASRMKRHSIGVDILPEYYSMVCDELK 268


>gi|255505540|ref|ZP_05346737.3| putative adenine specific DNA methyltransferase [Bryantella
           formatexigens DSM 14469]
 gi|255267130|gb|EET60335.1| putative adenine specific DNA methyltransferase [Bryantella
           formatexigens DSM 14469]
          Length = 467

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 101/269 (37%), Gaps = 25/269 (9%)

Query: 21  DKIIKGNSISVLE---KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS-----W 72
            +++ G++    +    +     DLI  DPPYN+    +    + S     T +      
Sbjct: 185 HRLMCGDATDFSDIGILMAGSEADLILTDPPYNVDYEAKDKSLERSYKRNTTRTTNEILN 244

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           DK +  + Y  F          V K    ++V  +               F +   ++W 
Sbjct: 245 DKMAEDDFY-NFLYRIFSNYCDVAKAGAAVYVFHADSEGLAFRQAFAAAGFKLAEVLIWE 303

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV-----QMRSDWLIP 187
           K+  +   +   ++  HE +++      A  +  +        ED        + D +  
Sbjct: 304 KNQFVIGRQDYHWR--HEPILYGWKEGTAHYFIDDRSQDNIFIEDDIDFKAMKKDDLVAY 361

Query: 188 ICSGSERLRNKDGEKL---------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
           I    E    +   +          HPT KP AL+ R++ +S++ G+I+ D F GSGT+ 
Sbjct: 362 IERIREAFMARTSVQFEKKPARSDMHPTMKPVALVGRLMANSSRRGEIVADFFGGSGTTL 421

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
             A++L R    +E+   Y D+  KR   
Sbjct: 422 IAAEQLGRVAYLMEISPKYCDVIIKRWEE 450


>gi|313844059|ref|YP_004061722.1| hypothetical protein OlV1_089 [Ostreococcus lucimarinus virus OlV1]
 gi|312599444|gb|ADQ91466.1| hypothetical protein OlV1_089 [Ostreococcus lucimarinus virus OlV1]
          Length = 305

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 106/299 (35%), Gaps = 51/299 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP---DHSLVDAVTDSWDKFSS 77
           ++I   + +  ++KLP  SVD++  DPPY L   G  +     D     +V  +  K   
Sbjct: 4   NRIELISCLDGIKKLPENSVDMVCTDPPYFLDGLGNDWDKGKLDKKGASSVVGNLPKGMK 63

Query: 78  FE-----AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           F+      +  F         RVLKP G      S      +   +++  F I + + W 
Sbjct: 64  FDRKQSKNFYNFYSEVSKEIFRVLKPGGAFVSFSSPRLYHSMTMAIEDGGFEIRDMLAWI 123

Query: 133 KSNPMP----------------------------NFRGRRFQNAHETL-IWASPSPKAKG 163
            +                                ++R  + + A E + +   P      
Sbjct: 124 YTQSQVKAFSQDHIIEKDKTKTREEKDNLKEVCKDWRTPQLKPAIEPMCLAVKPIEGRYI 183

Query: 164 YTFNYDALKAANEDVQMRSDWLIP--------------ICSGSERLRNKDGEKLHPTQKP 209
             F        N   + + D   P                        K     H + KP
Sbjct: 184 DNFEKYGTGLLNTSEETKVDGKFPSNVMTVQEGVLDSVFLVKKPTKSEKGDFNTHLSVKP 243

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
             L+  ++   TK   I+LDPF GSGT+   A K  R +IG ++ Q+Y+DI+ KR+ SV
Sbjct: 244 VDLIEHLIQLFTKKDAIVLDPFMGSGTTAVAAVKSNRKYIGFDINQEYVDISNKRLLSV 302


>gi|85717371|ref|ZP_01048322.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
           Nb-311A]
 gi|85717503|ref|ZP_01048450.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
           Nb-311A]
 gi|85717707|ref|ZP_01048642.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
           Nb-311A]
 gi|85695482|gb|EAQ33405.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
           Nb-311A]
 gi|85695698|gb|EAQ33609.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
           Nb-311A]
 gi|85695782|gb|EAQ33689.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
           Nb-311A]
          Length = 432

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 95/247 (38%), Gaps = 13/247 (5%)

Query: 21  DKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            ++I G++     V   +  +   ++F DPPYN++++G +             +  + S 
Sbjct: 170 HRLICGDARDPDTVAALMGTEQAQMVFTDPPYNVRIDGNVGGLGSIRHREFAMASGEMSE 229

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E +  F +A      R        ++   + ++  +      +   + N IVW K N  
Sbjct: 230 PE-FTGFLKASFGNLTRHSIDGSIHYICMDWRHMAEMLNAGDGIYTELKNLIVWAKDNGG 288

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
               G  +++ HE +          G   +++  +         + W     + + +   
Sbjct: 289 ---MGTFYRSRHELIF-----AFKNGTAPHHNHFELGQHGRHRTNVWEYRGVN-TMKAGR 339

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
            D   LHPT KP A+++  +   +  G I+LD F GSG++   A K  R     E    Y
Sbjct: 340 LDELALHPTVKPVAMIADAIKDVSSRGGIVLDLFAGSGSTLIAAHKTGRRAYVCEYDPIY 399

Query: 258 IDIATKR 264
            D   +R
Sbjct: 400 CDRIIQR 406


>gi|313892468|ref|ZP_07826058.1| DNA (cytosine-5-)-methyltransferase [Dialister microaerophilus UPII
           345-E]
 gi|313119150|gb|EFR42352.1| DNA (cytosine-5-)-methyltransferase [Dialister microaerophilus UPII
           345-E]
          Length = 251

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 56/273 (20%), Positives = 102/273 (37%), Gaps = 46/273 (16%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KI +G+ + +++ +   S+D+I  DPPY                   +  WDK       
Sbjct: 3   KIYRGDCLELMKNIKDNSIDMILCDPPYGT----------------TSAVWDKALD---- 42

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                       R++K NG + +       F    +  N   +   + +W+K+  +  F 
Sbjct: 43  ---CNLLWEQYNRIIKQNGAIVLF--SQLPFSCDLITTN-RKYFRYEWIWQKNMAVGFFN 96

Query: 142 GRRFQ-NAHETLIWASPSPKAKGYTFNYDALKAANED-------------------VQMR 181
            ++     HE ++                       D                   ++ +
Sbjct: 97  AKKMPLRQHENILVFYKRLPTYNPQMKQGCKPYKKRDIGRIYSTSQVYGRSQKDRIMKFQ 156

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                 +   ++ LR K     H TQKP  LL  ++ + T   + +LD   GSG++G   
Sbjct: 157 QRENKGVRYPTDVLRFKSARHKHATQKPIDLLMYLIKTYTNENETVLDNCMGSGSTGVAC 216

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
           K L R FIG+E++QD+ ++A  RI S +  G +
Sbjct: 217 KMLNRKFIGMELRQDFFNVAVDRILSCKSQGEL 249


>gi|294495895|ref|YP_003542388.1| DNA methylase N-4/N-6 domain protein [Methanohalophilus mahii DSM
           5219]
 gi|292666894|gb|ADE36743.1| DNA methylase N-4/N-6 domain protein [Methanohalophilus mahii DSM
           5219]
          Length = 336

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 114/255 (44%), Gaps = 5/255 (1%)

Query: 14  NSIFEWKDKIIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
             +  + +     + I+     +P +SVDLI  DPPY ++ + +L++  +   + V D +
Sbjct: 2   KPVDIYGNVFYNEDCITGAATHIPDESVDLIITDPPYGIKGD-KLHQHYNRDENFVVDGY 60

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
            +    + Y  F+ AW+    R+LKP G+++++  Y N++ I   L   N   +N I+W+
Sbjct: 61  VEIPEAK-YADFSLAWIKEAERILKPGGSIYIVSGYTNLYHILHALYQTNLEEINHIIWK 119

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
            +  +  +   ++ ++H  +++   + K++ +            +     ++        
Sbjct: 120 YNFGV--YTKTKYVSSHYHILYYQKAGKSRTFNLESRYGTCEKTEDGRSLNYRDREDVWI 177

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
                K G+  +  + P  LL +I+  S+  GD++ D F G  ++  VA  L R   G E
Sbjct: 178 INREYKPGKVKNKNELPHKLLKKIIQYSSNEGDLVCDMFLGGFSTPTVAIGLNRRCTGFE 237

Query: 253 MKQDYIDIATKRIAS 267
           + +      T+ I  
Sbjct: 238 ISETMFRAKTREIDQ 252


>gi|281491531|ref|YP_003353511.1| phage DNA methylase [Lactococcus lactis subsp. lactis KF147]
 gi|281375249|gb|ADA64762.1| Phage protein, DNA methylase [Lactococcus lactis subsp. lactis
           KF147]
          Length = 252

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 60/265 (22%), Positives = 96/265 (36%), Gaps = 47/265 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   + +  ++++P  SVD+I  D PY                     SWD    FE 
Sbjct: 5   NKIYNEDCLEGMKRIPDGSVDMILCDLPYGT----------------TNCSWDIIIPFE- 47

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                + W     R++K NG + + G+    F     L NL  +  + I  +        
Sbjct: 48  -----KLW-KQYNRIIKDNGAIVLTGA--EPFSSHLRLSNLKLYKYDWIWDKVKGTGFLN 99

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR---- 196
             ++    HE +     +      T+N       N     RS        G  +      
Sbjct: 100 AKKQPMRNHEIVSVFYKNQP----TYNPQKTSGHNLKTSFRSSEHQTDVYGEMKQDYTYS 155

Query: 197 --------------NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
                         +     LHPTQKP AL   ++ + T  GD +LD   GSGT+     
Sbjct: 156 STERYPRSIQIFSTDTQNSSLHPTQKPVALFEYLIKTYTNKGDTVLDNCMGSGTTAVACL 215

Query: 243 KLRRSFIGIEMKQDYIDIATKRIAS 267
              R+FIG E  ++Y + + +RI +
Sbjct: 216 NTERNFIGFETNEEYYNKSLQRIKN 240


>gi|326783015|ref|YP_004323412.1| DNA adenine methylase [Prochlorococcus phage P-HM2]
 gi|310005433|gb|ADO99821.1| DNA adenine methylase [Prochlorococcus phage P-HM2]
          Length = 309

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 72/319 (22%), Positives = 113/319 (35%), Gaps = 81/319 (25%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K+ I+ G+    L  +      +    PPY    N               D   +  + E
Sbjct: 2   KNTILFGDCRDTLPTI-DVKARMCVTSPPYYGLRNY----------GGEQDQIGQEDTPE 50

Query: 80  AYDAFTRAWLLACRRVLKPNGTLW-VIGSYHNIFR------------------------- 113
            +         + R VL  +GTLW  IG  +  +R                         
Sbjct: 51  QFIENLVDVFRSVRDVLTDDGTLWVNIGDSYYNYRPGKGQALVKQTVSKTERDQPQQCAR 110

Query: 114 -------------------IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
                              +   L+   +++  DI+W K NPMP     R   +HE L  
Sbjct: 111 RANKLAGLKEKDLIGIPWMLAFALRADGWYLRQDIIWHKPNPMPESVKDRCTKSHEYLFL 170

Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSD----------------------WLIPICSGS 192
            S +   K Y ++ +A+K   +      D                      +        
Sbjct: 171 LSKN---KKYYYDNEAIKEPVKQDWGTRDRTSGKYHNPGTGLQPHSGLSKSYERKNKRDV 227

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
             + NK  +  H    P  L+   +++ ++ GDI+LDPF GSGT+G VAKK  RS+IG E
Sbjct: 228 WTITNKPYKGAHFAVFPPDLIEPCILAGSEQGDIVLDPFMGSGTTGMVAKKNFRSYIGCE 287

Query: 253 MKQDYIDIATKRIASVQPL 271
           + +DY  + T RI S+ P 
Sbjct: 288 LHKDYASLQTDRIDSIPPQ 306


>gi|170783555|ref|YP_001740072.1| DNA modification methylase [Arthrobacter sp. Chr15]
 gi|150035063|gb|ABR67059.1| DNA modification methylase [Arthrobacter sp. Chr15]
          Length = 284

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 67/282 (23%), Positives = 112/282 (39%), Gaps = 61/282 (21%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++ G++  +L+++P+++V  +   PPY    +                   +  S   + 
Sbjct: 26  VLLGDAAQMLDRVPSQTVRSVVTSPPYWSLRDYNH-----------EGQIGRDESLPEFI 74

Query: 83  AFTRAWLLACRRVLKPNGTLW-VIGSYHN------------------------------- 110
                      RVL  +GTLW  +G  +                                
Sbjct: 75  KSLTVIFDKVSRVLTDDGTLWVNLGDSYTSGNRGYRAPDKKNANRAMSVRPKTPEGLKPK 134

Query: 111 -----IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
                 +     +Q   +++ +DI+W K N  P     R   +HE +   S +     Y 
Sbjct: 135 DLIGVPWMFAFAMQQAGWYLRSDIIWYKENTQPESVKDRPTRSHEHVFLFSKNE---KYH 191

Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
           ++ DA+K  N   ++R  W I           K     H    PE L+ R  +  ++PGD
Sbjct: 192 YDIDAVKGPNG-RRLRDVWEI---------NTKGYNGAHFAVYPEELVRRCALIGSEPGD 241

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            ILDPF GSGT+GAVA KL R FIG E+  DY+ + ++R++ 
Sbjct: 242 YILDPFLGSGTTGAVAHKLGRKFIGCEINADYLPLISERLSD 283


>gi|304316273|ref|YP_003851418.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777775|gb|ADL68334.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 417

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 56/269 (20%), Positives = 109/269 (40%), Gaps = 30/269 (11%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +++ G+S     V + +  +    +F DPP+N+        P       + D+     S
Sbjct: 169 HRLMCGDSTLLSDVQKLMDGQKARFVFTDPPWNVDYGSDTRHPSWKPRQILNDN----MS 224

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E + AF        + V +     +V+ S      +  +++   +   + I+W+K + +
Sbjct: 225 TEEFGAFLLRAFKCMKEVSEAGCMTYVVMSAQEWGSLMNVMREAGYHWSSTIIWKKDSLV 284

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
            + +    Q  +E +           Y +         +D +    W +P    SE    
Sbjct: 285 LSRKDYHTQ--YEPIW----------YGWLEGTRLCPLKDRKQSDVWEMPRPKVSEE--- 329

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
                 HPT KP +L+++ +++S+  GD+ LD F GSGT+   A++  R    +E+   Y
Sbjct: 330 ------HPTMKPVSLVAKAMLNSSHIGDLTLDLFGGSGTTMIAAQQTGRVCFMMELDSKY 383

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEP 286
            D+  KR   V   G   + +L+G    P
Sbjct: 384 CDVIVKRY--VSQFGADSVFLLSGSEKIP 410


>gi|237755754|ref|ZP_04584359.1| DNA methylase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692089|gb|EEP61092.1| DNA methylase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 325

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 67/282 (23%), Positives = 113/282 (40%), Gaps = 43/282 (15%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
           S+KN   +N  Q +  +W +KI   +S   + ++P  S+ L F  PPYN   NG+     
Sbjct: 70  SEKNVNNLNNFQQNTMDWMNKIYCQSS-ENMFQIPDGSIALAFTSPPYN---NGK----- 120

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS------YHNIFRIG 115
                     +DK  + + Y            RVLK  G   +  +      Y  +  + 
Sbjct: 121 ---------EYDKNLNLKEYLLLLARVGKEVFRVLKKGGRYVINIANLGRKPYIPLHSLL 171

Query: 116 TMLQ-NLNFWILNDIVWRKSNPMPNFRGR---------RFQNAHETLIWASPSPKAKGYT 165
            ++   + F    +I+W+K                   R ++ HE L+       ++   
Sbjct: 172 YIIHAEIGFRPAGEIIWQKGKGASGNCAWGSWLSAKSPRIRDIHEYLLIFVKDDFSRP-- 229

Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
                          + ++L    S  E       +  HP   P  L SR++   +   D
Sbjct: 230 -------DKGVSTISKEEFLNYTISIWEVPPASAKKIGHPAPFPIELASRVIKLFSYEND 282

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           +ILDPF GSGT+   AKKL+R+F+G ++ ++Y  IA KR+  
Sbjct: 283 VILDPFVGSGTTCVAAKKLKRNFVGYDINEEYCKIALKRLQE 324


>gi|319900714|ref|YP_004160442.1| DNA methylase N-4/N-6 domain protein [Bacteroides helcogenes P
           36-108]
 gi|319415745|gb|ADV42856.1| DNA methylase N-4/N-6 domain protein [Bacteroides helcogenes P
           36-108]
          Length = 277

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 67/268 (25%), Positives = 101/268 (37%), Gaps = 47/268 (17%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +   +    L+ L     +     PPYN+    +   P                    Y 
Sbjct: 22  LYNMDCRKGLKLLNDTCFNSTITSPPYNIGKEYETVMPIG-----------------DYI 64

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM-------LQNLNFWILNDIVWRKSN 135
            +    +    ++  P G+  +   Y N    G            + F++  +IVW    
Sbjct: 65  DWLTDIIKLIHKLTVPTGSFLLNVGYLNFPNKGKAVPIPYLLWDKIPFFLQQEIVWNYGA 124

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM--------------- 180
            +     R     +E ++W   +   K YTFN D ++  +                    
Sbjct: 125 GV--SAKRFLSPRNEKILWYIKNE--KNYTFNLDEIRDPDVKYPNQKKNGKLRCNSIGKN 180

Query: 181 -RSDWLI-PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
               W I  + SG+ R   +     HP Q PE L+ R+++  T   DIILDPF GSGT G
Sbjct: 181 PSDVWQIAKVTSGTNRASEE--RTAHPAQFPEDLIKRLILGFTNKNDIILDPFMGSGTVG 238

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           AVA +L R FIG E+  DY +IA KRI 
Sbjct: 239 AVAIELGRKFIGFEINSDYCEIAPKRIQ 266


>gi|61806250|ref|YP_214609.1| DNA adenine methylase [Prochlorococcus phage P-SSM4]
 gi|61563794|gb|AAX46849.1| DNA adenine methylase [Prochlorococcus phage P-SSM4]
          Length = 326

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 62/312 (19%), Positives = 113/312 (36%), Gaps = 79/312 (25%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           ++KI+ G+    L++   +        PPY      + Y  + + +        +  + E
Sbjct: 10  RNKILYGDCRDTLKQF-DEQARTCVTSPPY---YGLRNYGNEENQIG-------QEKTPE 58

Query: 80  AYDAFTRAWLLACRRVLKPNGTLW-VIGSYHNIFR------------------------- 113
            +           R VL  +GTLW  +G  +  +R                         
Sbjct: 59  EFIDQLVNVFKEVRNVLTDDGTLWVNLGDSYYNYRPGKGQSYPKQSVSKTNQDLPTQCNK 118

Query: 114 -------------------IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
                                  +++  +++  DI+W K NPMP     R   +HE +  
Sbjct: 119 RGNKLDGLKEKDLIGIPWMFAFAMRSDGWYLRQDIIWHKPNPMPESVKDRCTKSHEYIFL 178

Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG---------------------SE 193
            S +   K Y  N    +   +D   R+       +                        
Sbjct: 179 LSKNK--KYYYDNEAIKEPVKQDWGTRNRTNGKYHNSGSGLSPHSGLTKSYDRKNKRDVW 236

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
            + NK  +  H    P  L++  +++ ++ GDIILDPF GSGT+  VAK+L R +IG E+
Sbjct: 237 SITNKPYKGSHFAVFPPDLITPCILAGSEKGDIILDPFMGSGTTAMVAKQLGRDYIGCEL 296

Query: 254 KQDYIDIATKRI 265
            ++Y ++  +R+
Sbjct: 297 HEEYGNLIDQRV 308


>gi|237738209|ref|ZP_04568690.1| chromosome partitioning protein parB [Fusobacterium mortiferum ATCC
           9817]
 gi|229420089|gb|EEO35136.1| chromosome partitioning protein parB [Fusobacterium mortiferum ATCC
           9817]
          Length = 439

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 52/264 (19%), Positives = 104/264 (39%), Gaps = 29/264 (10%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +++ G+S     V + +   ++DL+  DPPYN+       +  +          D  SS
Sbjct: 162 HRLMCGDSTKKEDVEKLVDGATIDLMITDPPYNVNYESTAGKIKN----------DNMSS 211

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            + Y  F + +      V++     ++  +           + + F I   ++W K+   
Sbjct: 212 NDFY-EFLKKFYANAFSVMRDGAAFYIFHADSETKAFRGACEEVGFKISQCLIWVKNAFN 270

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE-------------DVQMRSDW 184
            + +   ++  HE  ++      A  +  +        +             ++ +    
Sbjct: 271 LSMQDYHWR--HEPCLYGWKLGTAHYFIADRSQDTILEDIESLKSKSKTELLEMYLTLQK 328

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
            +   S   R        +HPT KP  LL+R++V+S++    ILD F GSG++   A++L
Sbjct: 329 TLENVSTIIRENKPLKNDVHPTMKPLKLLARLMVNSSQKEWNILDLFGGSGSTMMTAEQL 388

Query: 245 RRSFIGIEMKQDYIDIATKRIASV 268
            R    +E    + D+  KR ASV
Sbjct: 389 GRKSYLMEYDPRFADVIVKRFASV 412


>gi|187251377|ref|YP_001875859.1| DNA modification methylase [Elusimicrobium minutum Pei191]
 gi|186971537|gb|ACC98522.1| DNA modification methylase [Elusimicrobium minutum Pei191]
          Length = 222

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 58/253 (22%), Positives = 92/253 (36%), Gaps = 41/253 (16%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            +  G+ + V++ +  + VD I  DPPY    + + +         +      F+  E+ 
Sbjct: 10  TLYLGDCLEVMQTI--ERVDAIITDPPY----DEKTHNGADKKFSDIN-----FAPLESP 58

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
               +  L   R  +    +   +G Y                 +   +W K   MP   
Sbjct: 59  ALLAKTLLGKSRFWVLAFCSFEQLGQYR---------DGAGEAWIRAGIWDKITNMPQMT 109

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G R     E +     +   K                     W     +   R   + G 
Sbjct: 110 GDRPAQGGEGIAIMHNNGMKK---------------------WNGGGKAAIYRYLVERGN 148

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HPTQKP  L+  ++   T  G ++LDPF GSGT+G    +L R FIGIE+   Y DI+
Sbjct: 149 KQHPTQKPLELIEELISLYTNEGQLVLDPFMGSGTTGVACARLNRKFIGIEIDPKYFDIS 208

Query: 262 TKRIASVQPLGNI 274
             RI +    G +
Sbjct: 209 CHRIEAELRQGKL 221


>gi|50843057|ref|YP_056284.1| ParB family DNA methylase [Propionibacterium acnes KPA171202]
 gi|50840659|gb|AAT83326.1| DNA methylase (ParB family) [Propionibacterium acnes KPA171202]
          Length = 416

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 92/254 (36%), Gaps = 38/254 (14%)

Query: 20  KDKIIKGNS-----ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           + +++ G++     I +L  +  K  +L+  DPPYN+              D ++   DK
Sbjct: 166 RHRLVCGDATNAGDIELL--MDGKKANLVLTDPPYNVAFESS---------DGLSIKNDK 214

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            S+ + +  F  A       V +   + +V  +           Q+  F +    +W K 
Sbjct: 215 MSA-DGFYEFLLAAFTQMAGVCEKGASAYVFHADTEGLNFRRAFQDAGFKLSGCCIWVKD 273

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           + +       +Q  HE +++         +  +         D   R             
Sbjct: 274 SLV--LGRSPYQWQHEPVLYGWVKTGKHTWYADRKQTTVWRFDKPRR------------- 318

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                    HPT KP  LL+  + +ST+   I+LD F GSG++    +   R    +E+ 
Sbjct: 319 ------NADHPTSKPLDLLAYPIGNSTQANAIVLDTFAGSGSTLMACEATNRIAYCMELD 372

Query: 255 QDYIDIATKRIASV 268
           + Y  +  +R A  
Sbjct: 373 EKYASVILRRYADA 386


>gi|239907576|ref|YP_002954317.1| hypothetical protein DMR_29400 [Desulfovibrio magneticus RS-1]
 gi|239797442|dbj|BAH76431.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 246

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 92/244 (37%), Gaps = 32/244 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDAVTDS-----WD 73
            + +G+++S+L +LP   VDL+  DPPY    L L+ +   P     +  T         
Sbjct: 10  TLYQGDALSILRELPGDVVDLVLTDPPYSSGGLNLSARQVNPAAKYQNTGTRRVYPPMLG 69

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                 ++  +   WL  C R+ +   +  V   +  +  +   +Q   +     IVW K
Sbjct: 70  DLKDQRSFVMWASLWLGECWRLARAGASCLVFSDWRQLPALTDAIQAAGWAWKGIIVWHK 129

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
            N  P+    R  +  E +I                + +          D          
Sbjct: 130 PNARPSLGSFR--HDAEFVIHGVKDRMQ------THSHQCLPGVFTYAMD---------- 171

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
                  +K+H T KP  L+  +L + +  G  +LDPF G GT+     +  R FIG+E+
Sbjct: 172 -----PRQKVHLTAKPVRLVKDLL-AVSPEGATVLDPFLGGGTTAMACLETGRRFIGVEL 225

Query: 254 KQDY 257
             +Y
Sbjct: 226 STEY 229


>gi|227498650|ref|ZP_03928794.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226904106|gb|EEH90024.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 319

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 63/326 (19%), Positives = 107/326 (32%), Gaps = 91/326 (27%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            D II  +++  L +LP +SV      PPY    +             +     +  + E
Sbjct: 6   TDTIINRDALYALRELPEESVHCCVTSPPYYALRDY-----------GLDMQIGREDTPE 54

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI---------------------------- 111
            Y           RRVL+ +GTLW+  +                                
Sbjct: 55  QYIDRLTEVFRELRRVLRSDGTLWLNIADTYCGTGNKGYHADPKNPKGRNGQQIARNNRV 114

Query: 112 ------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
                       + +   L+   +++ +DI+W+K NPMP     R    +E +   +   
Sbjct: 115 SGCKQKDLIGIPWLLAFALRADGWYLRSDIIWQKENPMPESVKDRPTRCYEHIFLLTK-- 172

Query: 160 KAKGYTFNYDALKAA----------------------------------NEDVQMRSDWL 185
            +K Y ++  A+                                             + L
Sbjct: 173 -SKKYFYDAAAIAEPLAPTTAARYRTGRSAGQKYADEIPGQGKVQGLNRARSGSYYDEAL 231

Query: 186 IPICSGSERLR---NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           +P       +        +  H    P  L    + +    G ++LDPFFGSGT+GA A+
Sbjct: 232 MPTMRNRRDVWLINTVPYKGGHFAAFPPKLAETCIKAGCPKGGVVLDPFFGSGTTGAAAR 291

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASV 268
           +L R +IGIE+  +Y  +A  RI   
Sbjct: 292 QLDRHYIGIEINAEYCALARARIGGT 317


>gi|295093174|emb|CBK82265.1| DNA modification methylase [Coprococcus sp. ART55/1]
          Length = 270

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 54/268 (20%), Positives = 94/268 (35%), Gaps = 32/268 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP--------DHSLVDAVTDSWD 73
           +I+ G+++ +++       D +  DPPY      Q  R              +A+ D   
Sbjct: 27  RILHGDTLKLVKGFQPGIFDAVITDPPYASGGTKQNERNRTTNQKYSSMKAENALPDFDG 86

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                 ++  +   WL   R+  K    + +   +     I   LQ   +      VW K
Sbjct: 87  DNKDQRSWTHWMAEWLYDVRKACKRGAPICLFIDWRQYPSITDALQWAGWIWRGTAVWDK 146

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
            N  P     RF+   E ++W S  P                       +  +    G  
Sbjct: 147 GNSRPQ--KGRFRQQAEYIVWGSNGPM--------------------PINRPVSCLPGVF 184

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           R  N    ++H T+KP  L+  ++    +PG +ILDPF G+GT+   A +     +GIE+
Sbjct: 185 RYGNPQ-NRIHVTEKPLQLMKDVIQI-CEPGGLILDPFAGAGTTILAATESGYQAVGIEV 242

Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTG 281
              Y  + + R+      G         
Sbjct: 243 TDAYYKLGSDRVRIALEAGAEAENKEPQ 270


>gi|323485814|ref|ZP_08091149.1| DNA methylase [Clostridium symbiosum WAL-14163]
 gi|323400802|gb|EGA93165.1| DNA methylase [Clostridium symbiosum WAL-14163]
          Length = 250

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 94/247 (38%), Gaps = 21/247 (8%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            I   + +  L  +P  S+DLI  DPPY ++      R    L   +    ++       
Sbjct: 19  TIYHQDCLEGLRAIPDASIDLILTDPPYLIKDTHAGGRT--RLARTLQPINNELRDNGLV 76

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                A L    RVLK    L++  +   I               + I W K+N  P F 
Sbjct: 77  GGLDPAVLPELVRVLK-TINLYIWCNKAQIPDYLNYFVRELDCSFDIITWVKTNSPPTFH 135

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            +   +  E  ++       +  ++             +                    E
Sbjct: 136 NKYLSDK-EYCLYFRKGGYCQPTSYETAKTAYFQPTNVL-----------------DKKE 177

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPT KP  ++  ++ +S+KPGDI+LDPF GSGT+     +L R ++G E+  +Y ++A
Sbjct: 178 YPHPTIKPLNIVKTLIGNSSKPGDIVLDPFLGSGTTAVACTELGRQYLGYELNGEYYEVA 237

Query: 262 TKRIASV 268
            +RI   
Sbjct: 238 QRRIQDT 244


>gi|299135951|ref|ZP_07029135.1| DNA methylase N-4/N-6 domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298602075|gb|EFI58229.1| DNA methylase N-4/N-6 domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 305

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 61/292 (20%), Positives = 107/292 (36%), Gaps = 44/292 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ--LYRPDHSLVDAVTDSWDKFSSF 78
           + I++G+S+S+L+ +   S+DLI +D PY +  +    L+   +S     + + DK  + 
Sbjct: 6   NTILEGDSVSLLKGVHDSSIDLILSDIPYGIGADDWDVLHDNTNSAYLGSSPAQDKAGAI 65

Query: 79  -------------------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
                              + Y  +   W     RVLKP G+  V        R    ++
Sbjct: 66  FKKRGKPLNGWSEADRAIPKQYYDWCLTWAPDWLRVLKPGGSAIVFAGRRLSHRCVAAME 125

Query: 120 NLNF-------WILNDIVWRKSNPMPNFRGR---------------RFQNAHETLIWASP 157
           +  F       W+ +    R       F  R                 +   E ++W   
Sbjct: 126 DSGFTYKDMLGWLRDRAAHRAQRLSVVFERRGDFDNRDKWEGWKVGNLRPTFEPILWFVK 185

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK-LHPTQKPEALLSRI 216
                    +           +          +       + GE  LHPTQKP  L+  +
Sbjct: 186 PYPIGKTIADNVLNHGLGAFNERALLRYQSQPNNVIVCGMESGEGGLHPTQKPVRLMRAL 245

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +  +T  G ++LDPF GSG++   A+   R F+G E    + +IA +R+  V
Sbjct: 246 IELTTIEGQLVLDPFCGSGSTLVAAQASNRQFLGFEQDAHFCEIARERLDDV 297


>gi|152981982|ref|YP_001354447.1| DNA modification methylase [Janthinobacterium sp. Marseille]
 gi|151282059|gb|ABR90469.1| DNA modification methylase [Janthinobacterium sp. Marseille]
          Length = 411

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 96/248 (38%), Gaps = 30/248 (12%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G+S    S    +     D++F DPPYN+               A+ +      
Sbjct: 170 QHRLLCGDSTVAKSYTRLMQGDLADMVFTDPPYNVNYANSAKDKMRGKDRAILNDNLG-- 227

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             + +  F  A L     V    G ++V  S   +  +    +         I+W K+  
Sbjct: 228 --DGFYDFLLAALTP--TVTHCRGGIYVAMSSSELDVLQAAFRAAGGKWSTFIIWAKNTF 283

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
                    Q  +E +++  P    + +            D      W I     ++   
Sbjct: 284 TLGRADY--QRQYEPILYGWPEGAQRHWC----------GDRDQGDVWAIKKPQKND--- 328

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                 LHPT KP  L+ R + +S++PG+++LDPF GSGT+   A+K  R    IE+   
Sbjct: 329 ------LHPTMKPVELVERAIRNSSRPGNVVLDPFGGSGTTLIAAEKSGRVARLIELDPK 382

Query: 257 YIDIATKR 264
           Y+D+  +R
Sbjct: 383 YVDVIVRR 390


>gi|300940961|ref|ZP_07155485.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 21-1]
 gi|284922568|emb|CBG35655.1| putative DNA methyltransferase [Escherichia coli 042]
 gi|300454285|gb|EFK17778.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 21-1]
          Length = 321

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 70/326 (21%), Positives = 116/326 (35%), Gaps = 76/326 (23%)

Query: 2   SQKNSLAINENQNSIFEWKD--KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR 59
            +KNS     N    F   +   I   +S+ V++ +P  SV+L+F  PPY L    +   
Sbjct: 12  KEKNSTTKLVNGFEPFYESNLGSIFHADSLDVMKSIPDNSVNLVFTSPPYALHFKKEYGN 71

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI--GSYH-------- 109
                                Y  +   +    +R+L  +G+  +   GS++        
Sbjct: 72  VCQK----------------DYVEWFVDFAKEIKRILTEDGSFVLNIGGSWNPGEPTRSI 115

Query: 110 NIFRIGTML-QNLNFWILNDIVWRKSNPMPNFRGR------RFQNAHETLIWASPSPKAK 162
             F++   L + + F +  +  W     MP           R +++ E + W S  P  K
Sbjct: 116 YHFKLVIALVEEVGFRLAQETFWYNPAKMPVPAQWVTVKRVRVKDSVEYVFWFSKGPHPK 175

Query: 163 -----------------------------GYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
                                        G+  N    K  N      +       S   
Sbjct: 176 ASNKKVLRPYSKDMLRLAAKGVKTTVRPSGHNINESFDKTHNGGSIPPNFIDDETPSDVL 235

Query: 194 RLRNK------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
           ++ N             +G K+HP + P  L    +   T  GD++LDPF GS T+GAVA
Sbjct: 236 KMGNNAANDVYTKKCKANGIKIHPARFPMQLPEFFIKMLTDEGDLVLDPFGGSMTAGAVA 295

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIAS 267
           + L R +IGI+  ++Y+D A  R   
Sbjct: 296 ESLNRRWIGIDTVEEYLDGALYRFEE 321


>gi|332983335|ref|YP_004464776.1| ParB domain-containing protein nuclease [Mahella australiensis 50-1
           BON]
 gi|332701013|gb|AEE97954.1| ParB domain protein nuclease [Mahella australiensis 50-1 BON]
          Length = 417

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 57/269 (21%), Positives = 109/269 (40%), Gaps = 30/269 (11%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +++ G+S     V + +  +    +F DPP+N+        P       + D+     S
Sbjct: 169 HRLMCGDSTMLSDVQKLMNGQKARFVFTDPPWNVDYGSDTRHPSWKPRQILNDN----MS 224

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E + AF        + V +     +V+ S      +  +++   +   + I+W+K + +
Sbjct: 225 TEEFGAFLLRAFKCMKEVSEAGCMTYVVMSAQEWGSLMNVMREAGYHWSSTIIWKKDSLV 284

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
            + +    Q  +E +           Y +         +D +    W IP    SE    
Sbjct: 285 LSRKDYHTQ--YEPIW----------YGWLDGTRLCPLKDRKQSDVWEIPRPKVSEE--- 329

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
                 HPT KP +L+++ +++S+  GD+ LD F GSGT+   A++  R    +E+   Y
Sbjct: 330 ------HPTMKPVSLVAKAMLNSSHIGDLTLDLFGGSGTTMIAAQQTGRVCFMMELDSKY 383

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEP 286
            D+  KR   V   G   + ++TG    P
Sbjct: 384 CDVIVKRY--VSQFGADSVFLVTGSEKIP 410


>gi|224437420|ref|ZP_03658389.1| DNA methylase N-4/N-6 domain protein [Helicobacter cinaedi CCUG
           18818]
 gi|313143882|ref|ZP_07806075.1| DNA methylase N-4/N-6 [Helicobacter cinaedi CCUG 18818]
 gi|313128913|gb|EFR46530.1| DNA methylase N-4/N-6 [Helicobacter cinaedi CCUG 18818]
          Length = 274

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 68/264 (25%), Positives = 104/264 (39%), Gaps = 27/264 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +I G+++S L+KL   S+D+    PPYN Q N + +   + L D   D  D+    +AY 
Sbjct: 2   LICGDTLSELQKLENDSIDMGVTSPPYNKQENKRGWLVKNVLYDNTCDKLDE----KAYQ 57

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF-----WILNDIVWRKSNPM 137
               A L    R+ K  G+     ++   +  G +L  L +     W L   +       
Sbjct: 58  ENQIAVLNELYRITKEGGSF--FYNHKIRWEKGKLLHPLQWISQTKWNLRQEIIWDRGIA 115

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
            N RG RF    E + W            N    +  +    + S W I           
Sbjct: 116 GNIRGWRFWQIEERIYWLIKPKGK-----NLIGEELQSRHALLSSIWRI----------R 160

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
            +    HP   P AL  R + S       +++DP+ GSGT+G  AK L   FIGI+  + 
Sbjct: 161 PESNNAHPAPFPLALPLRCIFSILNENGGVVIDPYCGSGTTGIAAKILNCDFIGIDNAKT 220

Query: 257 YIDIATKRIASVQPLGNIELTVLT 280
           Y+ +A  RI + Q         L 
Sbjct: 221 YLTLAESRITNYQHFLKEAQLELN 244


>gi|210614073|ref|ZP_03290029.1| hypothetical protein CLONEX_02242 [Clostridium nexile DSM 1787]
 gi|210150851|gb|EEA81859.1| hypothetical protein CLONEX_02242 [Clostridium nexile DSM 1787]
          Length = 268

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 55/255 (21%), Positives = 94/255 (36%), Gaps = 32/255 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP--------DHSLVDAVTDSWD 73
           +I+ G+++ +++     + D +  DPPY      Q  R           S   A+ D   
Sbjct: 30  RILHGDTLKLVKAFQPGTFDAVITDPPYASGGTKQNERNRTTNQKYSSMSPEKALPDFDG 89

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                 ++  +   WL   R+  K    + +   +     +   LQ   +      VW K
Sbjct: 90  DQKDQRSWTHWMAEWLYDVRKACKSGAPICLFIDWRQYPSMTDALQWAGWIWRGTAVWDK 149

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
           +N  P     RF+   E +IW S  P                          +    G  
Sbjct: 150 TNSRPQ--KGRFRQQTEFIIWGSNGPMPISR--------------------PVSCLPGVF 187

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           R  N    ++H T+KP  L+  ++    +PG  ILDPF G+GT+   A +     +GIE+
Sbjct: 188 RYGNPQ-NRVHVTEKPLQLMKDVVQI-CEPGGRILDPFAGAGTTILAAAQQGYQAVGIEV 245

Query: 254 KQDYIDIATKRIASV 268
              Y  + T+R+   
Sbjct: 246 TDAYFQLGTERVREA 260


>gi|55980378|ref|YP_143675.1| putative modification methylase [Thermus thermophilus HB8]
 gi|194709111|pdb|2ZIF|A Chain A, Crystal Structure Of Ttha0409, Putative Dna Modification
           Methylase From Thermus Thermophilus Hb8- Complexed With
           S- Adenosyl-L-Methionine
 gi|194709112|pdb|2ZIF|B Chain B, Crystal Structure Of Ttha0409, Putative Dna Modification
           Methylase From Thermus Thermophilus Hb8- Complexed With
           S- Adenosyl-L-Methionine
 gi|194709113|pdb|2ZIG|A Chain A, Crystal Structure Of Ttha0409, Putative Dna Modification
           Methylase From Thermus Thermophilus Hb8
 gi|194709114|pdb|2ZIG|B Chain B, Crystal Structure Of Ttha0409, Putative Dna Modification
           Methylase From Thermus Thermophilus Hb8
 gi|55771791|dbj|BAD70232.1| putative modification methylase [Thermus thermophilus HB8]
          Length = 297

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 59/285 (20%), Positives = 96/285 (33%), Gaps = 49/285 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++  G++  VL   P  SV L+   PPY               +    D+  +    E 
Sbjct: 22  HRLHVGDAREVLASFPEASVHLVVTSPPYWT-------------LKRYEDTPGQLGHIED 68

Query: 81  YDAFTRA---WLLACRRVLKPNGTLWVIGS--------------YHNIFRIGTMLQNLNF 123
           Y+AF            R+L P G L ++                +     I    + L F
Sbjct: 69  YEAFLDELDRVWREVFRLLVPGGRLVIVVGDVAVARRRFGRHLVFPLHADIQVRCRKLGF 128

Query: 124 WILNDIVWRKSN-------------PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
             LN I+W K                 P   G   +   E ++        +  T     
Sbjct: 129 DNLNPIIWHKHTNASLEVEGRGVFLGKPYEPGAIIKTEIEYILMQRKPGGYRKPTQEQRE 188

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
                ++   R    I            +  K HP   P  L  R++   +  GD++LDP
Sbjct: 189 KSRLPKEDFHRFFRQI------WDDIPGESTKDHPAPFPLELAERLVRMFSFVGDVVLDP 242

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           F G+GT+   A +  R  +G+E+   Y  +A +R A   P  ++E
Sbjct: 243 FAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFAREVPGFSLE 287


>gi|150391731|ref|YP_001321780.1| DNA methylase N-4/N-6 domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149951593|gb|ABR50121.1| DNA methylase N-4/N-6 domain protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 411

 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 100/267 (37%), Gaps = 35/267 (13%)

Query: 21  DKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +++ G+S        L      +L+  DPPYN+   G   +  +   D + DS      
Sbjct: 168 HRLVCGDSTKAETFTLLMDGKLANLVVTDPPYNVNYEGSAGKIKN---DNLGDS------ 218

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
              +  F  A        +  + +++V  +               F++    +W+K + +
Sbjct: 219 --VFYEFLLAAFTNTEAAMTQDSSIYVFHADTEGLNFRKAFAEAGFYLSGTCIWKKQSLV 276

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                  +Q  HE +++         +         A+       ++  P  +GS     
Sbjct: 277 --LGRSPYQWQHEPVLFGWKKKGKHNWY--------ADRKQTTIWEFEKPKKNGS----- 321

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
                 HPT KP AL++  +++S+    I+LDPF GSG++     + +R    IE+ + +
Sbjct: 322 ------HPTMKPVALVAHPILNSSLSNCIVLDPFGGSGSTLIACDQTQRICHTIELDEKF 375

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRT 284
            D+  +R  S     +    +  GK  
Sbjct: 376 CDVIVERFISGAQSSDDVYLLRGGKEY 402


>gi|312114244|ref|YP_004011840.1| DNA methylase N-4/N-6 domain protein [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219373|gb|ADP70741.1| DNA methylase N-4/N-6 domain protein [Rhodomicrobium vannielii ATCC
           17100]
          Length = 271

 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 87/260 (33%), Gaps = 38/260 (14%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ------------LNGQLYRPDHSLVDAV 68
             +   +    L +L     D +  DPPY+                 +      +  D  
Sbjct: 34  HTLYNADCRLALPEL--NGFDAVITDPPYSSGGSTQAARNQAPSKKYRFTGTKKTDPDFG 91

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
            D+ D+ S       +   W+  C R  +  G L     + N+  I    Q   +     
Sbjct: 92  GDNRDQRS----LTLWCSDWMAECLRATRQGGALMCFIDWRNLPAIIDACQVGGWVYRGI 147

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
           + W K+      +G         +     +  A   T +  A                  
Sbjct: 148 VPWDKTEAARPNKGWFRTQVEYIV-----TATAGPITRDASAPGI--------------Y 188

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
            +G  R      +K H T KP  L+  +L +     + +LDPF GSGT+G    K+ R F
Sbjct: 189 QTGYIRTPVIAKDKHHITGKPVTLMQELLRTRDDWQN-VLDPFMGSGTTGVACVKMGRVF 247

Query: 249 IGIEMKQDYIDIATKRIASV 268
            GIE +  Y DIA +RI   
Sbjct: 248 TGIEFEPRYFDIACRRIEDA 267


>gi|226311531|ref|YP_002771425.1| hypothetical protein BBR47_19440 [Brevibacillus brevis NBRC 100599]
 gi|226094479|dbj|BAH42921.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 431

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 102/267 (38%), Gaps = 11/267 (4%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           +  ++ G++     V   +  +   L+  DPPYN+              D      +   
Sbjct: 173 RHILMCGDATSEQDVKRLMDGQRAALVVTDPPYNVAFKSDSAEL---ASDGRESIMNDDM 229

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E ++ F +A       ++ P   ++V             +           +W K+  
Sbjct: 230 PMEQFEDFLQAVFANYASIMDPKAAIYVFLPSSYQREFENKMNEAGIVSRTQCIWVKNAF 289

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
             +F   +F+  HE + +A    +A  +  +Y         +    +    +    E  R
Sbjct: 290 SLSFAQYKFK--HEPVFYAHLKGQAPAWYGDYKQTTVWKSGLPSFIEEPETVW---EVSR 344

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
               + +HPTQKP  LL+  + +S+K  D++ D F GSG++    +++ R    +E+   
Sbjct: 345 GDVSKYVHPTQKPLELLAIPIGNSSKKDDVVADFFGGSGSTLMTCEQMGRICRTMELDPK 404

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKR 283
           + D+  +R   V  +  + LT  + ++
Sbjct: 405 FCDVIKRRYYEVTGIEPVLLTRQSARK 431


>gi|295681318|ref|YP_003609892.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. CCGE1002]
 gi|295441213|gb|ADG20381.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. CCGE1002]
          Length = 439

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 54/264 (20%), Positives = 96/264 (36%), Gaps = 32/264 (12%)

Query: 21  DKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +++ G+S+    +  L      DLI  DPPYN+   G+  +      DA+         
Sbjct: 194 HRVMCGDSLRAENVSALMGGYLADLIITDPPYNVAYVGKTDKRMTIQNDAMQAG------ 247

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
              +  F            K    ++V  +          L +  F +    VW K + +
Sbjct: 248 --EFSRFLLTAHQTMFAAAKGGAGIYVFHADTEGLAFRGALLDAGFKLAQCCVWVKQSLV 305

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
              +   +Q  HE +++         +  +       + D   R+D              
Sbjct: 306 LGRQDYHWQ--HEPVLYGWKPTGKHRWYADRSQSTVWSFDRPARND-------------- 349

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
                LHPT KP A++   + +S++ GD++LD F GSGT+    +K  R    +E+   Y
Sbjct: 350 -----LHPTMKPVAVVEYPIQNSSRDGDLVLDTFGGSGTTLIACEKCGRRARLLELDPVY 404

Query: 258 IDIATKRIASVQPLGNIELTVLTG 281
            D+   R  +   L     T+ T 
Sbjct: 405 CDVIVARWQAYTGLSATHETIGTS 428


>gi|218441101|ref|YP_002379430.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
 gi|218173829|gb|ACK72562.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
          Length = 267

 Score =  145 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 100/262 (38%), Gaps = 26/262 (9%)

Query: 17  FEWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           FE  +  + +G+S ++      + +DLI   PPYN+ +N                  D  
Sbjct: 15  FEHDNITLYQGDS-TLDNLFNEEFIDLIVTSPPYNVGINYNSS--------------DDE 59

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVI--------GSYHNIFRIGTMLQNLNFWILN 127
            S++ Y  F+  W+  C R  K      +         G+      +  + Q + +   +
Sbjct: 60  ISYQDYLEFSGQWMSNCYRWSKTQARFALNIPLDKNKGGNRSVGADLTRIAQEVGWKYQS 119

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
            IVW + N         + +A    +  +P      +  +        +   ++ +  + 
Sbjct: 120 TIVWNEGNISRRTAWGSWLSASAPFV-IAPVELIVIFYKDQWKKTNGTKQSDIKREEFLE 178

Query: 188 ICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
             +G      +  +++ HP   P  L  R +   +   D + DPF GSGT+   A + +R
Sbjct: 179 WTNGLWTFNGESKKRIGHPAPFPRELPYRCIKLFSYVDDWVFDPFCGSGTTLLEAYRNKR 238

Query: 247 SFIGIEMKQDYIDIATKRIASV 268
             IG+E+  +Y +IA  R+   
Sbjct: 239 KGIGVELDLNYCEIAKTRLIET 260


>gi|281418288|ref|ZP_06249308.1| ParB domain protein nuclease [Clostridium thermocellum JW20]
 gi|281409690|gb|EFB39948.1| ParB domain protein nuclease [Clostridium thermocellum JW20]
          Length = 417

 Score =  145 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 56/269 (20%), Positives = 109/269 (40%), Gaps = 30/269 (11%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +++ G+S     V + +  +    +F DPP+N+        P       + D+     S
Sbjct: 169 HRLMCGDSTMLSDVQKLMNGQKARFVFTDPPWNVDYGSDTRHPSWKPRQILNDN----MS 224

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E + AF        + V +     +V+ S      +  +++   +   + I+W+K + +
Sbjct: 225 TEEFGAFLLRAFKCMKEVSEAGCMTYVVMSAQEWGSLMNVMREAGYHWSSTIIWKKDSLV 284

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
            + +    Q  +E +           Y +         +D +    W +P    SE    
Sbjct: 285 LSRKDYHTQ--YEPIW----------YGWLEGTRLCPLKDRKQSDVWEMPRPKVSEE--- 329

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
                 HPT KP +L+++ +++S+  GD+ LD F GSGT+   A++  R    +E+   Y
Sbjct: 330 ------HPTMKPVSLVAKAMLNSSHTGDLALDLFGGSGTTMIAAQQTGRVCFMMELDSKY 383

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEP 286
            D+  KR   V   G   + ++TG    P
Sbjct: 384 CDVIVKRY--VSQFGADSVFLVTGSEKIP 410


>gi|313895718|ref|ZP_07829274.1| DNA (cytosine-5-)-methyltransferase [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975844|gb|EFR41303.1| DNA (cytosine-5-)-methyltransferase [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 421

 Score =  145 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 55/274 (20%), Positives = 109/274 (39%), Gaps = 34/274 (12%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K ++I G+S    +    L  + V+L+  DPPY + L     +  +          D  +
Sbjct: 169 KHRVICGDSTLPETYERLLGGEKVNLVCTDPPYFVALESSSGKIKN----------DDLN 218

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             +AY  F ++   A    +  + +++V  +           ++  F +   +VW+K   
Sbjct: 219 DKDAY-EFLKSAFTAFHSAMATDASIYVFYATAKARIFHDAYEDAGFKVGAGLVWKKDRL 277

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +      ++   HE +IW         +  +         D                +  
Sbjct: 278 VLTRTDWKYI--HEPIIWGWRKDGRHRWYGDQKQTTVFAFDRI--------------KDS 321

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
            KDG   HP+ KP  L++ ++   T+   I+LD F GS ++    ++L R   G+E++  
Sbjct: 322 KKDGC-GHPSSKPVPLIAYLIKQCTQTNGIVLDGFLGSASTLIACEQLNRICYGVELEPK 380

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAF 290
           ++D+A +R    +  GN E   L  +R   R+ +
Sbjct: 381 FVDVAVERYIQSKD-GNAEDVFL--ERDGERIPY 411


>gi|298372695|ref|ZP_06982685.1| DNA (cytosine-5-)-methyltransferase [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298275599|gb|EFI17150.1| DNA (cytosine-5-)-methyltransferase [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 249

 Score =  145 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 106/258 (41%), Gaps = 28/258 (10%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL---NGQL-YRPDHSLVDAVTDSWDKFS 76
           +KI   + +  L ++P  S+DL+   PPYN+ L   NG+   R          +++D   
Sbjct: 5   NKIYNESCLETLSRIPDNSIDLVITSPPYNMNLRIRNGKYCSRQIVKEFSTKYENFDDNI 64

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVI----GSYHNIFRIGTMLQNLNFWILNDIVWR 132
             E Y  F    L    R    N   + I    GS   IF+I   L +   ++ + I+W 
Sbjct: 65  PIEEYYKFHFKVLKELLR--TSNIIFYNIQIVTGSKRAIFKIIGELSD---YLKDIIIWD 119

Query: 133 KSNPMPNFRGRRFQNAHETL-IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
           K    P           E + I+ +    ++ +          ++   ++          
Sbjct: 120 KGYAQPAMAQNVLNRRTELILIFDAKDAISRQFKKANFKRGTLDDLWLIKR--------- 170

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
                 K     H    PE L+  I+ + +  GD+I DPF G+GT+  VAK L R+++G 
Sbjct: 171 -----GKKITSSHSAVFPEELVKNIIENFSDEGDLIYDPFMGTGTTAYVAKLLNRNYLGS 225

Query: 252 EMKQDYIDIATKRIASVQ 269
           E+   Y ++  KR++ ++
Sbjct: 226 ELTSRYYEVINKRLSELK 243


>gi|85717470|ref|ZP_01048418.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
           Nb-311A]
 gi|85695716|gb|EAQ33626.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
           Nb-311A]
          Length = 432

 Score =  145 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 95/247 (38%), Gaps = 13/247 (5%)

Query: 21  DKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            ++I G++     V   +  +   ++F DPPYN++++G +             +  + S 
Sbjct: 170 HRLICGDARDPDTVAALMGPEQAQMVFTDPPYNVRIDGNVGGLGSIRHREFAMASGEMSE 229

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E +  F +A      R        ++   + ++  +      +   + N IVW K N  
Sbjct: 230 PE-FTGFLKASFGNLTRHSIDGSIHYICMDWRHMAEMLKAGDGIYTELKNLIVWAKDNGG 288

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
               G  +++ HE +          G   +++  +         + W     + + +   
Sbjct: 289 ---MGTFYRSRHELIF-----AFKNGTAPHHNHFELGQHGRYRTNVWEYRGVN-TMKAGR 339

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
            D   LHPT KP A+++  +   +  G I+LD F GSG++   A K  R     E    Y
Sbjct: 340 LDELALHPTVKPVAMIADAIKDVSSRGGIVLDLFGGSGSTLIAAHKTGRRACICEYDPIY 399

Query: 258 IDIATKR 264
            D   +R
Sbjct: 400 CDRIIQR 406


>gi|314055173|ref|YP_004063511.1| putative DNA methylase [Ostreococcus tauri virus 2]
 gi|313575064|emb|CBI70077.1| putative DNA methylase [Ostreococcus tauri virus 2]
          Length = 305

 Score =  145 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 63/293 (21%), Positives = 103/293 (35%), Gaps = 51/293 (17%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLY---RPDHSLVDAVTDSWDKFSSFE---- 79
           N +  +++LP  S+D++  DPPY L   G  +   + D     +V  +  K   F+    
Sbjct: 10  NCLDGMKRLPENSIDMVCTDPPYFLDGLGNDWNKNKIDKKGASSVVGNLPKGMKFDRKQS 69

Query: 80  -AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
             +  F         RVLKP G      S      +   ++   F I + + W  +    
Sbjct: 70  KKFHDFYLEVSKEIFRVLKPGGAFISFSSPRLYHSMTMAIEENGFEIRDMMAWVYTQSQV 129

Query: 139 ----------------------------NFRGRRFQNAHETL-IWASPSPKAKGYTFNYD 169
                                       ++R  + + A E + +   P        F   
Sbjct: 130 KAFSQDHIIEKDKTKTCEEKDKLKEMCKDWRTPQLKPAIEPMCLAVKPIEGRYIDNFEKY 189

Query: 170 ALKAANEDVQMRSDWLIP--------------ICSGSERLRNKDGEKLHPTQKPEALLSR 215
                N   + + D   P                        K     H + KP  L+  
Sbjct: 190 GTGLLNTSDETKVDGKFPSNVMTVEEGVLDRVFLVKKPTKTEKGNFNTHLSVKPVELVEH 249

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           ++   TK G  ILDPF GSGT+   A K  R +IG ++ Q+Y+DI+ KR+ S+
Sbjct: 250 LIQLFTKRGATILDPFMGSGTTAIAAVKCDRKYIGFDINQEYVDISNKRLLSL 302


>gi|300689933|ref|YP_003750928.1| dna modification methylase protein [Ralstonia solanacearum PSI07]
 gi|299076993|emb|CBJ49606.1| putative dna modification methylase protein [Ralstonia solanacearum
           PSI07]
          Length = 406

 Score =  145 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 97/263 (36%), Gaps = 30/263 (11%)

Query: 20  KDKIIKGNSISVL---EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G++  V      L  +  D++F DPPYN+               A+ +      
Sbjct: 170 RHRLLCGDATVVESYDRLLQGEPADMVFTDPPYNVNYANTAKDRQRGTSRAILNDNLGGG 229

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            ++   A     +  CR      G ++V  S   +  +    +         I+W K   
Sbjct: 230 FYDFLLAALTPTIANCR------GAIYVAMSSSELDVLQAAFREAGGRWSTFIIWAKDRF 283

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
                    Q  +E +++       + +  + D           R+D             
Sbjct: 284 TMGHADY--QRQYEPILYGWAEGAQRHWCGDRDQGDVWQIKKPARND------------- 328

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                 LHPT KP  L+ R + +S++PGD++LD F GSGT+   A+K  R+   IE+   
Sbjct: 329 ------LHPTMKPVELVERAIRNSSRPGDVVLDAFGGSGTTLIAAEKAARTARLIELDPR 382

Query: 257 YIDIATKRIASVQPLGNIELTVL 279
           Y D+  +R         I   ++
Sbjct: 383 YADVIVRRWEEYTGEQAIREALI 405


>gi|295189263|gb|ADF83450.1| putative DNA methylase [Lactobacillus phage LBR48]
          Length = 282

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 65/300 (21%), Positives = 103/300 (34%), Gaps = 77/300 (25%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
           KG+ + +++KLP  SVD I  DPPY                + +    D+    +     
Sbjct: 6   KGDCLELMKKLPDNSVDTIITDPPY----------------EYLNHRLDRIFDEQ----- 44

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI-------------VW 131
             A      R++KP G +   G   +  R   ML  +      +I             + 
Sbjct: 45  --AVFNEWDRIVKPKGLIVFFGRGESFHRWNCMLNGMGRKFKEEIIWEKNVSSTPFTAIG 102

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKG------------------YTFNYDALKA 173
           R    +    G + +               K                      NY   K 
Sbjct: 103 RNHETISILGGGKIRKVKVPYFNPEKPNFKKIEMDLKRLSSALKNPKEFSVISNYLKSKQ 162

Query: 174 ANEDVQMR---------SDWLIPICSGSERLRNKDGEKL--------------HPTQKPE 210
                  +          +   P  S S   + ++G +               HPTQKP 
Sbjct: 163 IAFTEPYKSAHSITVSGKNLKKPYVSLSVMRQVEEGIREKDVINVKFNRLHFEHPTQKPV 222

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
           AL+ R++  ++  GD ILDPF GSG++G   K L R+FIG+E+  +Y  +  +RI   Q 
Sbjct: 223 ALMERLMNLTSDEGDTILDPFMGSGSTGIACKNLGRNFIGMEIDDEYFGVTQRRIKQAQK 282


>gi|237742462|ref|ZP_04572943.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
           4_1_13]
 gi|229430110|gb|EEO40322.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
           4_1_13]
          Length = 312

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 69/316 (21%), Positives = 111/316 (35%), Gaps = 84/316 (26%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G+    L+KL  +S+D I   PPY    + +         +            E Y
Sbjct: 2   KIIHGDCFENLKKLETESIDCIVTSPPYWQLRDYETPGQIGLEENV-----------EEY 50

Query: 82  DAFTRAWLLACRRVLKPNGTLW-VIGSYHNI----------------------------- 111
                  +    R+LK +GT +  +G  ++                              
Sbjct: 51  LEKLMNIMNELYRILKKSGTFFLNMGDTYSNVNSKFSRRINKKRGKENIFKTITRKTDVK 110

Query: 112 --------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
                    R+   + +  + + N+I+W K N +P     RF N  E + + + +   + 
Sbjct: 111 RKSKLMIPERLCIKMIDAGWILRNEIIWHKPNVLPEAVSDRFTNDFEKIFFFTKN---QK 167

Query: 164 YTFNYDALKAANEDVQMRSDWLIPI--------------------------------CSG 191
           Y F       + + +    D +IP                                    
Sbjct: 168 YYFKKQYEPYSEKILSAFKDGIIPTGRKKLLESGESKMTMKKINKPWKAEYSEKGRNMRS 227

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
              +  K   + H    PE L++R L+S       +LDPF GSGT+  VAKKL  + IGI
Sbjct: 228 VWSVATKGIREGHYASFPEKLVTRCLISGCPENGTVLDPFLGSGTTLVVAKKLGINGIGI 287

Query: 252 EMKQDYIDIATKRIAS 267
           E+K++YI IA  RI  
Sbjct: 288 ELKKEYIAIAINRIKE 303


>gi|296394780|ref|YP_003659664.1| DNA methylase N-4/N-6 domain-containing protein [Segniliparus
           rotundus DSM 44985]
 gi|296181927|gb|ADG98833.1| DNA methylase N-4/N-6 domain protein [Segniliparus rotundus DSM
           44985]
          Length = 277

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 56/277 (20%), Positives = 98/277 (35%), Gaps = 38/277 (13%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD-------------H 62
           + + +  +++G++I++L  LP  S D +  DPPY+     Q  R                
Sbjct: 24  LADHRAALVRGDAIALLRSLPDGSADAVVTDPPYSSGGGTQAERNKAPNQKYPQSGHSGQ 83

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
           +L     D+ D++S    +  F   +L    R  +  G   V   +  I      LQ   
Sbjct: 84  ALPGFAGDNKDQYS----HLVFQHLFLAEALRATRAAGACVVFTDWRQIHTAVIALQTAG 139

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
           +     I W K N  P    R F++  E  +W +  P                 D     
Sbjct: 140 WVYRGVIPWAKKNARPI-NARSFRHGCEYAVWGTNGPH----------------DQIGHC 182

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
               P+            +++H  QKP  ++  ++  +     +++DPF GSG +G  A 
Sbjct: 183 ---TPLAGFVHASAPAPNKRVHVNQKPPEVMEHLVQIA-PENGLVVDPFAGSGATGIAAL 238

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
              R F+G E   D    A +R+             +
Sbjct: 239 AQGRRFLGCEHSPDIARTAAQRLQGALDQEEHAQAPM 275


>gi|300933375|ref|ZP_07148631.1| ParB family DNA methylase [Corynebacterium resistens DSM 45100]
          Length = 416

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 56/279 (20%), Positives = 108/279 (38%), Gaps = 38/279 (13%)

Query: 20  KDKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G++     V   +  KS +L+  DPPYN+              D +T   D+  
Sbjct: 166 RHRLVCGDATDADDVAMLMDGKSANLVLTDPPYNVAFESS---------DGLTIKNDEMK 216

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           + +++  F  A       VL   G+ +V  +            +  F +    +W K + 
Sbjct: 217 A-DSFYEFLLAAFTNMAGVLDKGGSAYVFHADTEGLNFRKAFIDAGFKLSGCCIWVKDSL 275

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +       +Q  HE +++         +  +                    I + ++  +
Sbjct: 276 V--LGRSPYQWQHEPVLYGWKQGAKHKWFADRKQTT---------------IWNFAKPRK 318

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           N D    HPT KP  LL+  + +ST+   IILD F GSG++   A++  R    +E+   
Sbjct: 319 NSD----HPTSKPLDLLAYPIRNSTQANAIILDTFAGSGSTLMAAEQTDRIAYLMELDDK 374

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
           Y  +  +R A        +   +T +R   + A+  LV+
Sbjct: 375 YASVILRRYAEATG----DAAGITCQRDGTQYAYLDLVK 409


>gi|260579071|ref|ZP_05846970.1| DNA (cytosine-5-)-methyltransferase [Corynebacterium jeikeium ATCC
           43734]
 gi|258602822|gb|EEW16100.1| DNA (cytosine-5-)-methyltransferase [Corynebacterium jeikeium ATCC
           43734]
          Length = 416

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 56/279 (20%), Positives = 108/279 (38%), Gaps = 38/279 (13%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G++     V   +  KS +L+  DPPYN+              D +T   D   
Sbjct: 166 RHRLVCGDATNADDVAVLMDGKSANLVLTDPPYNVAFESS---------DGLTIKNDAMK 216

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           + +++  F  A       VL   G+ +V  +            +  F +    +W K + 
Sbjct: 217 A-DSFYEFLLAAFTNMAGVLDKGGSAYVFHADTEGLNFRKAFIDAGFKLSGCCIWVKDSL 275

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +       +Q  HE +++         +  +                    I + ++  +
Sbjct: 276 V--LGRSPYQWQHEPVLYGWKQGAKHKWFADRKQTT---------------IWNFAKPRK 318

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           N D    HPT KP  LL+  + +ST+   IILD F GSG++   A++  R    +E+ + 
Sbjct: 319 NSD----HPTSKPLDLLAYPIRNSTQANAIILDTFAGSGSTLMAAEQTDRIAYLMELDEK 374

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
           Y  +  +R A        +   +T +R   + A+  LV+
Sbjct: 375 YASVILRRYAEATG----DAAGITCQRDGTQYAYLDLVK 409


>gi|295107187|emb|CBL04730.1| DNA modification methylase [Gordonibacter pamelaeae 7-10-1-b]
          Length = 283

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 59/292 (20%), Positives = 106/292 (36%), Gaps = 49/292 (16%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
           E+  SI    + II+G+ +  ++ +P +S+D++  D PY    N                
Sbjct: 11  EDTRSIEPLLNTIIEGDCLEKMKAIPDESIDMVLCDLPYGTTQN---------------- 54

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
            WD   + +             RRV+KP G + +  +   +F    ML   + +    + 
Sbjct: 55  KWDSIINLDIL-------FTEYRRVIKPRGVIAL--TSSGLFTAKLMLHAADLYKYKLVW 105

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN----YDALKAANEDVQMRSDW-- 184
            +          ++    +E +     S        +    YD     N+      D+  
Sbjct: 106 IKSKATNFLNAKKQPLRKYEDICIFYRSQPTYHPQMSQGESYDKGVRKNQLTGSYGDFDP 165

Query: 185 --------LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
                     P      +    +G   HPTQKP  L   ++ + T PGD++LD   GSG+
Sbjct: 166 KHVQSDGSRYPTDIVYFKTAESEGPVYHPTQKPVELGRYLIRTYTDPGDVVLDNACGSGS 225

Query: 237 SGAVAKKLRRSFIGIEMKQ----------DYIDIATKRIASVQPLGNIELTV 278
               A    R +IGIE  +          DYI++  +R+   +   + E  +
Sbjct: 226 FCVAACLEGRRYIGIEKNEGVARFKNEPIDYIEVCRRRLEEARSRMDEENAI 277


>gi|326784381|ref|YP_004324665.1| DNA adenine methylase [Synechococcus phage S-SSM5]
 gi|310003612|gb|ADO98008.1| DNA adenine methylase [Synechococcus phage S-SSM5]
          Length = 285

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 107/294 (36%), Gaps = 70/294 (23%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           KD I+ G+    + K+  + V +    PPY      + Y      +           + E
Sbjct: 7   KDTILYGDCRDTIPKIH-ERVQMCVTSPPY---YGLRDYGGQDKQIG-------LEQTPE 55

Query: 80  AYDAFTRAWLLACRRVLKPNGTLW-VIGSYHNIFR------------------------- 113
            Y           R VL  +GTLW  IG  +  +R                         
Sbjct: 56  KYIEELVNVFRKVRDVLSDDGTLWVNIGDSYYNYRPGKGQALVQQTVSNTKQDLPDNCPR 115

Query: 114 -------------------IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
                              +   L+   +++  DI+W K NPMP     R   +HE +  
Sbjct: 116 RGNKLDGLKEKDLIGIPWMLAFALRADGWYLRQDIIWNKPNPMPESVRDRCTKSHEYIFL 175

Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
            S    ++ Y F+ +A+K A    +   +           ++ K  +  H    P  L+ 
Sbjct: 176 LSK---SQNYYFDVNAIKEATRRKRSVWN-----------VKTKPYKGSHCAVFPPELIE 221

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
             + + +    IILDPF GSGT+  VAK+L R +IG E+  +Y ++   RI + 
Sbjct: 222 PCIKAGSDINHIILDPFIGSGTTAMVAKQLGRHYIGCELHPEYKNLINDRIPNT 275


>gi|257468542|ref|ZP_05632636.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium
           ulcerans ATCC 49185]
 gi|317062801|ref|ZP_07927286.1| DNA modification methylase M.SthI [Fusobacterium ulcerans ATCC
           49185]
 gi|313688477|gb|EFS25312.1| DNA modification methylase M.SthI [Fusobacterium ulcerans ATCC
           49185]
          Length = 312

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 71/315 (22%), Positives = 109/315 (34%), Gaps = 83/315 (26%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KI+ GNS+ VL+ L  +S+D +   PPY    +             V+      S    +
Sbjct: 3   KIMHGNSLEVLKTLEDESIDCVVTSPPYWQIRDY-----------GVSGQIGLESDVNEF 51

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHN------------------------------- 110
                       RVLK  GTL+V                                     
Sbjct: 52  LEKLMDIFDEVNRVLKKTGTLFVNMGDTYSNVNAKLAGGTNNKRHGKNNGYKTVPRKTNI 111

Query: 111 --------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
                     R+   +    + + N+I+W+K N +P     RF N  E + + S     +
Sbjct: 112 KRKSKMMIPERLAIKMIESGWILRNEIIWQKPNILPESVNDRFTNDFEKVFFFSKE---Q 168

Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSG------------------------------S 192
            Y F       +N+ +    + ++P  +                                
Sbjct: 169 KYYFKKQYEPYSNKTLTGFGNGIMPDNTKRLNPGESKAGMREGREWKAVYNENGRNMRTV 228

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
             +  K  ++ H    PE L+ R L S      ++LDPF GSGT+  VAK L    IGIE
Sbjct: 229 WNIATKGIKEGHFAIFPEELVRRCLDSGCPENGMVLDPFLGSGTTLKVAKSLNMHGIGIE 288

Query: 253 MKQDYIDIATKRIAS 267
           +K++YIDIA  RI  
Sbjct: 289 LKREYIDIAVGRIGE 303


>gi|28199223|ref|NP_779537.1| DNA methylase [Xylella fastidiosa Temecula1]
 gi|182681950|ref|YP_001830110.1| DNA methylase N-4/N-6 domain-containing protein [Xylella fastidiosa
           M23]
 gi|28057329|gb|AAO29186.1| DNA methylase [Xylella fastidiosa Temecula1]
 gi|182632060|gb|ACB92836.1| DNA methylase N-4/N-6 domain protein [Xylella fastidiosa M23]
 gi|307578213|gb|ADN62182.1| DNA methylase N-4/N-6 domain-containing protein [Xylella fastidiosa
           subsp. fastidiosa GB514]
          Length = 237

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 58/243 (23%), Positives = 97/243 (39%), Gaps = 30/243 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDAVT-----DSWD 73
           ++ +G+++ +L  + + SVD +  DPPY    +++  +        ++  T     D   
Sbjct: 10  RLHEGDALRLLCDIDSASVDAVITDPPYCSGAMRMADRFKPTKRKYINNGTKHVAPDFDC 69

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
            F     + A++  WL  CRRV +P G L V   +  +  +   +Q+   W    IV   
Sbjct: 70  DFRDHRGFLAWSSQWLSECRRVTRPGGVLLVFTDWRMLPTLTDAVQSAG-WAWQGIVVWD 128

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
             P    +  RF++  E ++WAS          N  A                    G  
Sbjct: 129 KTPACRPQLGRFRSQAEFIVWASCGLM------NPKAHPV--------------TPVGVF 168

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
                  EK H   KP AL+  ++     P   +LDPF GSGT+G  A +    FIG+ +
Sbjct: 169 STGTAAREKRHQVGKPLALMEHLVKI-VPPASTVLDPFAGSGTTGVAALRAGHRFIGMVI 227

Query: 254 KQD 256
             +
Sbjct: 228 GME 230


>gi|313652048|ref|YP_004046726.1| DNA methylase N-4/N-6 domain protein [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940799|gb|ADR19990.1| DNA methylase N-4/N-6 domain protein [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 288

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 94/252 (37%), Gaps = 25/252 (9%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++KG+ ++          DLI   PPYN+ +    ++ +               S+E Y 
Sbjct: 45  LLKGDVLNN-NYFENDIFDLIVTSPPYNVDIKYNTHKDN--------------ISYEEYL 89

Query: 83  AFTRAWLLACRRVLKPNGTLWVI--------GSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            F+ AWL  C +  K    L +         G       +  + Q + +   + I+W + 
Sbjct: 90  QFSEAWLSNCYKWSKKQARLCLNIPLDKNKGGQRSVGADLTILAQKVGWKYHSTIIWNEG 149

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N         + +A    + A        Y   +   +        + D  +   +G   
Sbjct: 150 NISRRTAWGSWLSASAPYVIAPVELIVILYKEEWKKTQGTRISDISK-DEFMQWTNGLWT 208

Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
              +  +++ HP   P  L  R +   +   DI+ DPF GSGT+   A    R  IG+E+
Sbjct: 209 FNGESKKRIGHPAPFPLELPYRCIKLFSFVQDIVFDPFAGSGTTLIAANNTNRYSIGLEI 268

Query: 254 KQDYIDIATKRI 265
              Y +++ +R+
Sbjct: 269 DSSYCELSKQRV 280


>gi|194709109|pdb|2ZIE|A Chain A, Crystal Structure Of Ttha0409, Putatative Dna Modification
           Methylase From Thermus Thermophilus Hb8-
           Selenomethionine Derivative
 gi|194709110|pdb|2ZIE|B Chain B, Crystal Structure Of Ttha0409, Putatative Dna Modification
           Methylase From Thermus Thermophilus Hb8-
           Selenomethionine Derivative
          Length = 297

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 59/285 (20%), Positives = 96/285 (33%), Gaps = 49/285 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++  G++  VL   P  SV L+   PPY               +    D+  +    E 
Sbjct: 22  HRLHVGDAREVLASFPEASVHLVVTSPPYWT-------------LKRYEDTPGQLGHIED 68

Query: 81  YDAFTRA---WLLACRRVLKPNGTLWVIGS--------------YHNIFRIGTMLQNLNF 123
           Y+AF            R+L P G L ++                +     I    + L F
Sbjct: 69  YEAFLDELDRVWREVFRLLVPGGRLVIVVGDVAVARRRFGRHLVFPLHADIQVRCRKLGF 128

Query: 124 WILNDIVWRKSN-------------PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
             LN I+W K                 P   G   +   E ++        +  T     
Sbjct: 129 DNLNPIIWHKHTNASLEVEGRGVFLGKPYEPGAIIKTEIEYILXQRKPGGYRKPTQEQRE 188

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
                ++   R    I            +  K HP   P  L  R++   +  GD++LDP
Sbjct: 189 KSRLPKEDFHRFFRQI------WDDIPGESTKDHPAPFPLELAERLVRXFSFVGDVVLDP 242

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           F G+GT+   A +  R  +G+E+   Y  +A +R A   P  ++E
Sbjct: 243 FAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFAREVPGFSLE 287


>gi|15616097|ref|NP_244402.1| hypothetical protein BH3535 [Bacillus halodurans C-125]
 gi|10176159|dbj|BAB07254.1| BH3535 [Bacillus halodurans C-125]
          Length = 449

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 103/279 (36%), Gaps = 43/279 (15%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           +  ++ G+S     V   +  +  D+IF DPPYN+   G            +    D   
Sbjct: 173 RHFLLVGDSTKIEDVKRLMGNEKADMIFTDPPYNVDYEGAT---------GMKIKNDNME 223

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E Y  F     +A  +V K  G ++V  +           Q+  F +   ++W K++ 
Sbjct: 224 DSEFY-QFLFDAFVAMYQVTKEGGPIYVCHADSEGLTFRKAFQDSGFLLKQCLIWVKNSL 282

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGY------------------TFNYDALKAANEDV 178
           +   +   ++  HE +++      A  +                  T   D +     + 
Sbjct: 283 VLGRQDYHWR--HEPILYGWKPGAAHKWYGGRKQSTVIEDPVDLAITPKVDHVLLTFNNG 340

Query: 179 QMRSDWLIPICS----------GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
              +   +P              + R+        HPT KP AL +R + +S+KPG+ +L
Sbjct: 341 ISSTVVKVPSYEIIHDGSDEGMTTWRIERPKRNADHPTMKPIALCARAIQNSSKPGERVL 400

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           DPF GSG++    ++  R    +E    Y ++  +R   
Sbjct: 401 DPFGGSGSTLIACEQTGRICHMMEYDPVYAEVIIRRWEE 439


>gi|257142662|ref|ZP_05590924.1| site-specific DNA-methyltransferase [Burkholderia thailandensis
           E264]
          Length = 235

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 98/249 (39%), Gaps = 32/249 (12%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDA-----VTDSWDKFSS 77
            +++++   LP  S+D++F DPPY    L  + +   P    +++      TD       
Sbjct: 1   MDALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSTKYINSDTKTVYTDFESDNMD 60

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
             A+  +  AWL  CRR LKP G L     +  +  +  ++Q     +    VW K+   
Sbjct: 61  QRAWAFWCHAWLTECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILRGVAVWDKTPGR 120

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
              R   F    E ++W               A + A  D ++    + P          
Sbjct: 121 TRPRRGGFAQQAEFVVW---------------ASRGAMRDCEVYLPGVFP--------CR 157

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
               K H T+KP   ++R +V     G ++ D F GSGT  A A++    +IG E    Y
Sbjct: 158 LPLPKQHVTEKPLD-IAREVVRLVPAGGVVCDLFAGSGTFLAAAREASLHWIGCETNAAY 216

Query: 258 IDIATKRIA 266
             IA  R+ 
Sbjct: 217 HAIALHRLG 225


>gi|225869634|ref|YP_002745581.1| phage DNA methylase [Streptococcus equi subsp. equi 4047]
 gi|225699038|emb|CAW92152.1| phage DNA methylase [Streptococcus equi subsp. equi 4047]
          Length = 388

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 52/252 (20%), Positives = 99/252 (39%), Gaps = 32/252 (12%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G+      V + +  +  DL+  DPPYN+   G+         DA+T   D   
Sbjct: 157 RHRLMCGDGTNQSDVKKLMGGELADLLITDPPYNVAYQGKT-------KDALTIQNDNMD 209

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           S  A+  F      A   V+KP    ++  +    +       ++ + +   ++W K+  
Sbjct: 210 S-NAFRQFLGEAFKAADSVIKPGAVFYIWHADSEGYNFRGACLDVGWTVRQCLIWNKNAM 268

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +   +   ++  HE  ++      +  +        A++       D+  P  +G     
Sbjct: 269 VLGRQDYHWK--HEPCLYGWKDGASHLW--------ASDRKQTTVIDFDKPQRNGD---- 314

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                  HPT KP  L    + ++TK  DI+LD F GSGT+    +   R    +E    
Sbjct: 315 -------HPTMKPVGLFDYQIKNNTKGHDIVLDLFGGSGTTLIACESNGRCARLMECDPK 367

Query: 257 YIDIATKRIASV 268
           Y+D+  KR   +
Sbjct: 368 YVDVIIKRWEEL 379


>gi|163858751|ref|YP_001633049.1| site-specific DNA-methyltransferase [Bordetella petrii DSM 12804]
 gi|163262479|emb|CAP44782.1| site-specific DNA-methyltransferase [Bordetella petrii]
          Length = 257

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 65/276 (23%), Positives = 102/276 (36%), Gaps = 43/276 (15%)

Query: 8   AINENQNSIFEWKDK-------IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           ++   Q+ IF   +        + +G+ +++L  L     D +  DPPY+     +  R 
Sbjct: 10  SVKRKQHPIFNNLNHVRISGADLYQGDCLAILPAL-DGPFDAVVTDPPYSSGGQSKGNRA 68

Query: 61  DHS----LVDAVTDSWDKFS----SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
             +    L       W  F+       AY  ++  WL  C   L   G   V   +  + 
Sbjct: 69  GGTGSKYLNSGGESPWPDFAGDSKDQRAYLHWSTLWLALCYEKLTAGGLAIVFSDWRQLP 128

Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
                LQ   F      VW K+     ++G     A E  +W S    A           
Sbjct: 129 VTSDALQGAGFTWRGVGVWDKAASSRPYKGGFRAQA-EYFVWGSKGQLAGD--------- 178

Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
                            +G  R++ + G+KLH   KP  L+  ++ +       ILDPF 
Sbjct: 179 --------------TYSAGVFRVQQRPGDKLHQVGKPLPLMDSLVAAVGPR---ILDPFM 221

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           GSGT+G  A    +SF GIE+   Y  IA  R+ +V
Sbjct: 222 GSGTTGVAALTQGKSFTGIELAGHYFQIAADRLRTV 257


>gi|163732390|ref|ZP_02139836.1| DNA methylase N-4/N-6 [Roseobacter litoralis Och 149]
 gi|161394688|gb|EDQ19011.1| DNA methylase N-4/N-6 [Roseobacter litoralis Och 149]
          Length = 442

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 100/252 (39%), Gaps = 13/252 (5%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K +++ G+++        +      +IF DPPYN+ + G +             +  +  
Sbjct: 176 KHRLLCGDALNPADWRALMDQDKAQMIFVDPPYNVPIAGHVSGLGAVKHREFAMASGEM- 234

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           S +A+  F R                +V   + ++  +    + +   + N  +W K+N 
Sbjct: 235 SQDAFTDFLRGSFRNLAAFSADGSVHFVCMDWRHMREVLDAAEGIYPELKNLCIWAKTNA 294

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
                G  +++ HE +         K  T  +       +  + RS+      + + R  
Sbjct: 295 G---MGSFYRSQHELVF------AFKSGTAPHINNFGLGDKGRHRSNLWTYAGANTFRAG 345

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
             D  K HPT KP  +++  ++  ++ G I+ D F GSGT+   A K  R  +G+E+   
Sbjct: 346 RMDDLKAHPTVKPVDMVADAILDCSERGGIVADAFAGSGTTLLAAAKTGRIGVGMEIDPH 405

Query: 257 YIDIATKRIASV 268
           Y D+  +R+   
Sbjct: 406 YADLIVRRLQDA 417


>gi|326406568|gb|ADZ63639.1| phage DNA methylase [Lactococcus lactis subsp. lactis CV56]
          Length = 271

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 62/294 (21%), Positives = 105/294 (35%), Gaps = 47/294 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   +    ++++P  SVD+I  D PY                     SWD    F+ 
Sbjct: 5   NKIYNEDCSEGMKRIPDGSVDMILCDLPYGT----------------TNCSWDIIIPFD- 47

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                + W     R++K NG + + G+    F     L NL  +  + I  +        
Sbjct: 48  -----KLW-KQYERIIKDNGAIVLTGA--EPFSSHLRLSNLKIYKYDWIWDKVKGTGFLN 99

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR---- 196
             ++    HE +     +      T+N       N     RS        G  +      
Sbjct: 100 AKKQPMRNHEIISVFYKNQP----TYNPQKTSGHNLKTSFRSSEHQTDVYGEMKQDYTYS 155

Query: 197 --------------NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
                         +     LHPTQKP AL   ++ + T  GDI+LD   GSGT+     
Sbjct: 156 STERYPRSIQIFSTDTQNSSLHPTQKPVALFEYLIKTYTNKGDIVLDNCMGSGTTAIACL 215

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
              R+FIG E  ++Y + + +RI +     ++     +  R   + +   + E+
Sbjct: 216 NTERNFIGFETNEEYYNKSLQRIKNNVTQLDLFEEYPSQIRYYAKESLEAIGEK 269


>gi|209524877|ref|ZP_03273423.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
 gi|209494756|gb|EDZ95065.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
          Length = 301

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 65/289 (22%), Positives = 109/289 (37%), Gaps = 48/289 (16%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +K++ G+  +V   +P  S+  I   PPY    N        +  D   +   + ++   
Sbjct: 9   NKVLLGDIRTVSVIIPDNSIQAIITSPPYFGHRNY-------TGKDGCANEIGREANVTD 61

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVI--GSYHN------IFRIGTMLQNLNFWILNDIVWR 132
           Y           +  LK NG LW+    +Y N       +R+   L++  + + +DI+W+
Sbjct: 62  YINNLVTCFEVVKPKLKNNGLLWLNLGDTYRNKQLEGVPWRVAFALKDRGWILRSDIIWK 121

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAK----------------------GYTFNYDA 170
           K N MP+    R    HE +   S +                             F    
Sbjct: 122 KPNAMPSSVKNRPTTDHEYIFMFSKNTDYYYDADAIREPHITFTEQSKMRGGRNHFGKRN 181

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-----------HPTQKPEALLSRILVS 219
               N       +        +   + ++   +           H    PE L+   L++
Sbjct: 182 STPENGKNSGNQNLHDGRWDQAFHPKGRNKRTVWEIPLGKFRDAHFAVYPEDLVKICLLA 241

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           ST+ GD++LDPF GSGT+G VA K  R FIG E+ + Y  +A  RI  +
Sbjct: 242 STRQGDLVLDPFTGSGTTGVVAIKHDRKFIGCELVKTYQKMAQNRIDEI 290


>gi|259502088|ref|ZP_05744990.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
 gi|259169901|gb|EEW54396.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
          Length = 326

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 72/280 (25%), Positives = 117/280 (41%), Gaps = 37/280 (13%)

Query: 15  SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           S+   +D+ I G+S  V+ + P +  DL   DPPYNL          H            
Sbjct: 41  SLAAIRDRSINGDSFQVVRQFPDRFADLALVDPPYNLDKRYDGLNFKHQ----------- 89

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
             S   Y  +T+ W+   +  L P  +L+V   +     +  +L   NF + N I W++ 
Sbjct: 90  --STGEYQEYTQRWIDLIKPKLTPTASLYVFADWQTSVALAPVL-AANFTVKNRITWQRE 146

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN------YDALKAANEDVQMRSDWLIP- 187
                     ++N  E + + +     + YTFN         + A   +     DW    
Sbjct: 147 KGRG--AKGNWKNGMEDIWFLT--MDEREYTFNVDQVKQRRQVIAPYRENGQAKDWHESA 202

Query: 188 ------------ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
                           S    +      HPTQKPE LL++++++S+ PGD++LDPF G+G
Sbjct: 203 AGRFRDTMPSNFWDDISIPYWSMAENTGHPTQKPEKLLAKLILASSNPGDLVLDPFAGAG 262

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           +S   AKKL R F+GIE  + Y      R+ +     +I+
Sbjct: 263 SSLVTAKKLDRHFVGIEQSRLYTAWGVYRLQAADHDRSIQ 302


>gi|308272428|emb|CBX29032.1| hypothetical protein N47_J00130 [uncultured Desulfobacterium sp.]
          Length = 600

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 58/281 (20%), Positives = 112/281 (39%), Gaps = 34/281 (12%)

Query: 18  EWKDKIIKGNSISVLEKLPAK--SVDLIFADPPY--NLQLNGQLYRPDHSLVDAVTDS-- 71
           ++++ +I+G+ +S    L  +   VDL+  DPP+        ++Y  +  + +       
Sbjct: 60  DFRNLLIQGDCLSACAYLKQQNIKVDLVCIDPPFASGASYAKKIYLRNGVVSEVEAQDNT 119

Query: 72  ------WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW- 124
                 +      E +  +    LLA + V+   G+++V   +H    +  +L  +    
Sbjct: 120 IGEEIMYGDIWQKEDFLNWLYERLLAIKDVMSETGSIYVHLDWHIGHYVKILLDEVFGEE 179

Query: 125 -ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA--------- 174
              N+I+W  S         +  N H+ + W S SP    Y   Y +             
Sbjct: 180 LFKNEIIWCYSGGAVPV--DKLPNKHDVIYWYSKSPDVWTYNPIYKSYSEKTQQRGRTAV 237

Query: 175 -------NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
                   E+    +DW   +   +        ++ + TQKPE+LL RI+  S++ G I+
Sbjct: 238 KGNNAGLREEGTPITDWWTDLTPVTSPTD--PEKQYYVTQKPESLLKRIINLSSEAGMIV 295

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            D F GSGT+   A+  +R FI  ++  + +     R+   
Sbjct: 296 ADFFSGSGTTAKSAEDEKRKFIACDIGINALQTTRDRLVKA 336


>gi|229037677|ref|ZP_04189516.1| DNA modification methylase-like protein [Bacillus cereus AH1271]
 gi|228727652|gb|EEL78789.1| DNA modification methylase-like protein [Bacillus cereus AH1271]
          Length = 227

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 66/240 (27%), Positives = 101/240 (42%), Gaps = 29/240 (12%)

Query: 37  AKSVDLIFADPPYNLQLNGQL--YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
            + VD I   PPYNL  +          +  D ++   DK +  E Y  +    L +C  
Sbjct: 8   GQKVDCIVTSPPYNLGGDFHTMVGGKRVTYGDYISPYKDKLNE-EDYQKWQIDVLDSCFE 66

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNF-----WILNDIVWRKSNPMPNFRGRRFQNAH 149
           VLK +G  ++  ++ N    GT++    +     + ++ ++        N   RRF   H
Sbjct: 67  VLKDDG--FMFYNHKNRIVKGTVISPFEWIKKSKFNISQVIVMNLKSTANVDKRRFFPVH 124

Query: 150 ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
           E +   +  P  K            N    +   W +                 HP    
Sbjct: 125 ELIFVLTKVPSVK-----------LNNFECLTDVWDMKKVP--------RKISGHPATFH 165

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           E L  R +VSSTK G+I+LDPF GSGT+   A KL R FIG E+ ++YI IA KR+  ++
Sbjct: 166 EELPRRCIVSSTKEGEIVLDPFMGSGTTAYSALKLNRKFIGFELSEEYISIANKRLQELE 225


>gi|153817361|ref|ZP_01970028.1| haemagglutinin associated protein [Vibrio cholerae NCTC 8457]
 gi|126512110|gb|EAZ74704.1| haemagglutinin associated protein [Vibrio cholerae NCTC 8457]
          Length = 241

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 92/243 (37%), Gaps = 29/243 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KI + +++  L+ L   SVDL   DPPY      +       L ++ + S   FS F   
Sbjct: 27  KIYQMDAVDWLKTLENCSVDLFITDPPYESLEKYRQIGTTTRLKESKSSSNQWFSVFP-- 84

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           +           RVLK     ++      +F    + +++ F     IVW K        
Sbjct: 85  NTRFEELFREVYRVLKKGSHFYLFCDQETMFLAKPIAESVGFKFWKPIVWDKC---AIGM 141

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G  ++  +E +++     +                         +   S  + L  K   
Sbjct: 142 GYHYRARYEFILFFEKGKRK------------------------LNDLSVPDVLEYKRVW 177

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K +PT+KP  LL  ++  S+   +I+ D FFGSG++   A  L R +IG ++     +  
Sbjct: 178 KGYPTEKPVELLEVLIRQSSSENEIVADSFFGSGSTLIAANNLSRKYIGCDISSSAHEYF 237

Query: 262 TKR 264
             R
Sbjct: 238 KNR 240


>gi|323693302|ref|ZP_08107520.1| DNA methylase [Clostridium symbiosum WAL-14673]
 gi|323502785|gb|EGB18629.1| DNA methylase [Clostridium symbiosum WAL-14673]
          Length = 416

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 89/250 (35%), Gaps = 35/250 (14%)

Query: 21  DKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +++ G+S      E L      +L+  DPPYN+   G   +  +               
Sbjct: 167 HRLVCGDSTKPETYELLMNGKLANLVVTDPPYNVNYEGSAGKIKN-----------DNME 215

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
             A+  F           +  + +++V  +            +  F++    +W+K + +
Sbjct: 216 NSAFYQFLLDAYTRMYESMADDASIYVFHADTEGLNFRRAFADAGFYLSGCCIWKKQSLV 275

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                  +Q  HE  ++                   + +           I    +  +N
Sbjct: 276 --LGRSPYQWMHEPCLFGWK---------------KSGKHQWYTGRKETTIWEFDKPKKN 318

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
            D    HPT KP  LL+  +++S+    ++LDPF GSG++    ++  R    IE+ + +
Sbjct: 319 GD----HPTMKPIPLLAYPIMNSSMTNSLVLDPFGGSGSTLIACEQTGRICHTIELDEKF 374

Query: 258 IDIATKRIAS 267
            D+  KR   
Sbjct: 375 CDVIVKRYIE 384


>gi|254674319|emb|CBA10103.1| putative adenine-specific DNA-modification methylase [Neisseria
           meningitidis alpha275]
          Length = 243

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 64/259 (24%), Positives = 103/259 (39%), Gaps = 45/259 (17%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           ++K+   S  +    PPYN+                    ++     E Y  +   W+ +
Sbjct: 1   MDKISKGSFQMTITSPPYNIGK-----------------EYESILDLEHYLEWCERWMQS 43

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTM-------LQNLNFWILNDIVWRKSNPMPNFRGRR 144
              + + +G  W+   Y ++ + G             NF++L ++VW  +  +      R
Sbjct: 44  IHHLTEDSGCFWLNLGYLHVEKKGLAVPIPYLLWDKTNFFLLQEVVWNYAAGVAC--RNR 101

Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM----------------RSDWLIPI 188
           F   +E L+W   +P    YTFN DA++  N                        W I  
Sbjct: 102 FSPRNEKLLWYVKNPA--KYTFNLDAVRDPNVKYPNQKKNGKLKCNPLGKNPTDVWQIAK 159

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
            + S R R+      HP Q P  L+ RI+ +S+   D+ILDPF GSGT+     K  R  
Sbjct: 160 VT-SGRNRSSRERTAHPAQFPLELIERIIRASSNQNDVILDPFIGSGTTALAGLKNNRFV 218

Query: 249 IGIEMKQDYIDIATKRIAS 267
           IG E+  +YIDI  +R   
Sbjct: 219 IGFEINDEYIDIIKERFKE 237


>gi|237744767|ref|ZP_04575248.1| chromosome partitioning protein parB [Fusobacterium sp. 7_1]
 gi|229431996|gb|EEO42208.1| chromosome partitioning protein parB [Fusobacterium sp. 7_1]
          Length = 438

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 118/277 (42%), Gaps = 28/277 (10%)

Query: 21  DKIIKGNS--ISVLEKL-PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +++ G+S  +  ++KL   + +DL+  DPPYN+         D+   +      D  +S
Sbjct: 161 HRLMCGDSTKLEDVKKLVNNEVIDLLVTDPPYNV---------DYQAANGQKIKNDNMNS 211

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E + +F  A+      V++     ++  +          L +  F I   ++W K+  +
Sbjct: 212 -ENFYSFLLAFYKNAYEVMRAGAGFYIFHADSETKAFRGALADAGFKISQCLIWVKNQFI 270

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK----------AANEDVQMRSDWLIP 187
            + +   ++  HE  ++         +  N+               + +++Q     ++ 
Sbjct: 271 LSRQDYNWK--HEPCLYGWKEGVKHFFIRNFTQDTIQEIYSKTESMSKKELQETLKNILE 328

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
             +   R        +HPT KP  L+S+++ +S+K    +LD F GSG++   A++L+R 
Sbjct: 329 EYTTIIRENKPLRNDIHPTMKPIRLISKLIHNSSKENWNVLDLFGGSGSTLIAAEQLKRK 388

Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
              +E  + Y D+  KR A    +G  ++ +L   +T
Sbjct: 389 AFLMEFDEKYADVIVKRYAE---MGKKDIKLLRNGKT 422


>gi|189499109|ref|YP_001958579.1| DNA methylase N-4/N-6 domain-containing protein [Chlorobium
           phaeobacteroides BS1]
 gi|189494550|gb|ACE03098.1| DNA methylase N-4/N-6 domain protein [Chlorobium phaeobacteroides
           BS1]
          Length = 315

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 61/294 (20%), Positives = 102/294 (34%), Gaps = 42/294 (14%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           E   +++ G++   L  +  +SV L+   PPY      + Y           +     + 
Sbjct: 36  ETNHRLVTGDARK-LGFIEDESVHLVVTSPPYWTLKKYRDYE----------NQLGDVAD 84

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR---------------IGTMLQNLN 122
           +E +          C RVL P G L  +     + R               I    + + 
Sbjct: 85  YEEFLTELDKVWEHCYRVLVPGGRLICVVGDVCLSRRKNDGRHTVVPLHASIQEHCRKMG 144

Query: 123 FWILNDIVWR---------KSNPMPNFRGRRFQNA--HETLIWASPSPKAKGYTFNYDAL 171
           F  L+ I+W            N           NA     + +     K  GY     A 
Sbjct: 145 FDNLSPIIWHKIANASYEANGNGGGFLGKPYEPNAVIKNDIEYILMERKPGGYRKPSVAT 204

Query: 172 KAANE-DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
           +  +    +    W   I +G          + HP   PE L+ R++   +  GD +LDP
Sbjct: 205 RVLSVISDENHRQWFQSIWTG----LTGASTRTHPAPYPEGLVERLIRMFSFVGDTVLDP 260

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
           F G+GT+   A K  R+ IG+E+   Y  +A KRI            ++T  ++
Sbjct: 261 FMGTGTTTVAAAKWGRNSIGVEIDPHYYAMAEKRIRQATASLFSTAEIVTQAKS 314


>gi|110636168|ref|YP_676376.1| DNA methylase N-4/N-6 [Mesorhizobium sp. BNC1]
 gi|110287152|gb|ABG65211.1| DNA methylase N-4/N-6 [Chelativorans sp. BNC1]
          Length = 276

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 68/267 (25%), Positives = 106/267 (39%), Gaps = 46/267 (17%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++ G+   ++        D+I ADPPY                   +  WD+  S     
Sbjct: 23  LLTGDCRDLMPA--HGPFDMILADPPYG----------------DTSLGWDRRVS----- 59

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
                WL   R  L+ +G+LWV GS  +      +  +  F +  +IVW K N    F  
Sbjct: 60  ----GWLPLARAALRHSGSLWVFGSLRSFMATADLFADAGFRLAQEIVWEKQNGTS-FHS 114

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP--------------- 187
            RF+  HE ++   P+       +N            +R     P               
Sbjct: 115 DRFKRVHEIVVQFYPAETPWRDIYNDVQTTPDATARTVRRKQRPPHTGHIDAGHYVSHDG 174

Query: 188 ---ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
              I      +RN  G  +HPT+KP ALL  ++ +S  PG ++ D F GSG++G   +  
Sbjct: 175 GPRIMRSVIYVRNTHGRAIHPTEKPSALLEILIRTSCPPGGLVGDWFAGSGSAGEACRLT 234

Query: 245 RRSFIGIEMKQDYIDIATKRIASVQPL 271
            R+++G E+     + A  RIASV PL
Sbjct: 235 GRNYLGCEIDGAMAERARTRIASVLPL 261


>gi|319935614|ref|ZP_08010048.1| hypothetical protein HMPREF9488_00879 [Coprobacillus sp. 29_1]
 gi|319809491|gb|EFW05912.1| hypothetical protein HMPREF9488_00879 [Coprobacillus sp. 29_1]
          Length = 232

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 61/251 (24%), Positives = 111/251 (44%), Gaps = 31/251 (12%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL----NGQLYRPDHSLVDAVTDSWDKFS 76
           + II G++  V++K+ +KS+DLI  DPPY +      NG++ +    L + + DS D  +
Sbjct: 8   NSIILGDAYEVIKKIDSKSIDLIVTDPPYLISKGSSGNGRISKQMLKLTNELQDS-DVAN 66

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             +         L    R++K    +++  +   I         ++      + W K+NP
Sbjct: 67  GIKL------DILDEFMRIMKKPN-IYIWCNKKQILPYLDYFVGIHKCSFEILTWIKTNP 119

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +P        +    L +         Y                ++ W+ P     ++L 
Sbjct: 120 IPTCGRNYMNDKEYCLYFRKGISLHTTY-------------QTGKTYWITPTNVKDKKLY 166

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                  HPT KP  ++  ++ +S+ PGD++ D F GSGT+   +K+L R++IGIE   D
Sbjct: 167 G------HPTIKPIDIIKTLIQNSSAPGDVVFDCFLGSGTTAVASKELERNYIGIEKNSD 220

Query: 257 YIDIATKRIAS 267
           Y +I  +R+ S
Sbjct: 221 YYEITLQRLLS 231


>gi|257453086|ref|ZP_05618385.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
           3_1_5R]
 gi|257462768|ref|ZP_05627176.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
           D12]
          Length = 314

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 70/318 (22%), Positives = 113/318 (35%), Gaps = 86/318 (27%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KI+ G+    L+ +  +S+D I   PPY    +             V++      S E Y
Sbjct: 2   KIMHGDCSEYLKTIKTESIDCIVTSPPYWQLRDY-----------GVSNQIGMEESIEEY 50

Query: 82  DAFTRAWLLACRRVLKPNGTLW-VIGSYHNI----------------------------- 111
                  +    RVLK +GT +  +G  ++                              
Sbjct: 51  IDKLMNIMNELYRVLKKSGTFFLNLGDTYSNVNSKFYPANKMKDNKFSWIEGTVVSRKTN 110

Query: 112 ----------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
                      R+   + +  + + N+I+W K N +P     RF N  E + + +    +
Sbjct: 111 ILRKSKMMIPERLSIRMIDSGWILRNEIIWHKPNALPESLTDRFTNDFEKIFFFTK---S 167

Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGS----------------------------- 192
           + Y F       + + +    D ++P                                  
Sbjct: 168 QKYYFQKQYEPYSEKTLHSFKDGIMPTGKKKMLSAGESKMAMKKIDKPWRAVYNEKGRNM 227

Query: 193 ---ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
                + NK   + H    PE L+ R L+S      I+LDPF GSGT+  VAK L  + I
Sbjct: 228 RTVWSIANKGLREGHYASFPEKLVERCLLSGCPQNGIVLDPFLGSGTTLKVAKNLNLNGI 287

Query: 250 GIEMKQDYIDIATKRIAS 267
           GIE+K++YIDIA  RI  
Sbjct: 288 GIELKKEYIDIAVHRIGE 305


>gi|325662079|ref|ZP_08150698.1| hypothetical protein HMPREF0490_01436 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471742|gb|EGC74961.1| hypothetical protein HMPREF0490_01436 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 420

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 106/279 (37%), Gaps = 36/279 (12%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G++     V   +  K  +LI  DPPYN+              D ++   DK  
Sbjct: 171 RHRLMCGDATSAEDVAALMDGKKANLIVTDPPYNVAFESS---------DGLSIKNDKME 221

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           + + Y  F  A        L+  G  +V  +            +  F +    +W K++ 
Sbjct: 222 NSKFY-EFLLAAFKNMADNLEKGGAAYVFHADTEGLNFRKAFIDAGFHLSGCCIWVKNSL 280

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +        Q  HE +++        G+  N     + N      + W       +    
Sbjct: 281 VLGRSDY--QWQHEPVLY--------GFLQNGKHYWSKNAGRSQTTIWNFDKPKKN---- 326

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                K HPT KP  LL+  + +S++   I++D F GSG++    ++  R    +EM + 
Sbjct: 327 -----KNHPTSKPLDLLAYPIGNSSQENAIVIDTFGGSGSTLMTCEQTNRICHTMEMDEK 381

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
           Y  +  +R   V+  G+ E   +   R   ++ +  LV+
Sbjct: 382 YASVILRRY--VEDTGDAENVFVI--RDGKKLMYADLVK 416


>gi|166364160|ref|YP_001656433.1| site-specific DNA-methyltransferase [Microcystis aeruginosa
           NIES-843]
 gi|166086533|dbj|BAG01241.1| site-specific DNA-methyltransferase [Microcystis aeruginosa
           NIES-843]
          Length = 388

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 108/297 (36%), Gaps = 46/297 (15%)

Query: 1   MSQKNSLAINENQNSIFEWK-----DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG 55
           + +++   +   + +  E+K     + I  G+   +LE++PA+SVDLIF  PPY      
Sbjct: 90  LLKQDESKLENRKKTKKEYKLSSLRNTIGFGDCSELLEEMPAESVDLIFTSPPYF----- 144

Query: 56  QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS-------Y 108
                           + +F  +E Y    R  +  C RVL       +  S        
Sbjct: 145 -----------NARPEYSEFEEYETYLLKLRQVIRKCHRVLSEGRFFVINISPVLLRRAS 193

Query: 109 HNI--------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
            N         F +  +     +  ++DI+W K        GR  + A +       +  
Sbjct: 194 RNQASKRIAVPFDLHRIFVEEGYDFIDDIIWLKPEGAGWATGRGRRFAADRNPLQYKTVP 253

Query: 161 AKGYTFNYDALKAANEDVQMRS------DWLIPICSGSERLR----NKDGEKLHPTQKPE 210
              Y   Y        D  +R+           I  G ER      N      HP   P 
Sbjct: 254 VTEYVLVYRKHTDLLIDWHIRNHPDQEVVKASKIADGYERTNVWKINPVTNSKHPAAFPV 313

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            L  +++   +  GD++LDPF GSGT G  A  L R F+  E   +YI++  K I  
Sbjct: 314 ELAEKVITYYSFKGDVVLDPFAGSGTVGLAAASLDRRFVLFESNFNYIELIRKLITE 370


>gi|238801657|ref|YP_002922713.1| gp41 [Burkholderia phage BcepIL02]
 gi|237688032|gb|ACR15034.1| gp41 [Burkholderia phage BcepIL02]
          Length = 310

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 59/295 (20%), Positives = 116/295 (39%), Gaps = 56/295 (18%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
             ++++ +  L + S+ L+   PPYN+                    ++K S  +AY   
Sbjct: 19  CQDNLAFMRPLKSGSMQLVVTSPPYNIGKK-----------------YEKRSPLDAYVQA 61

Query: 85  TRAWLLACRRVLKPNGTL-WVIGSYHNIFRIGTM-------LQNLNFWILNDIVWRKSNP 136
               +  C R+L P G+L W +G++     I  +        +     + N +VW   + 
Sbjct: 62  QAQVISECVRLLSPRGSLCWQVGNHVQKGEIFPLDTVLYPVFREHGLKLRNRVVWHFEHG 121

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS-------------- 182
           +      R    +ET++W +       Y FN D ++  ++    +               
Sbjct: 122 LHCS--NRLSGRYETILWFTKGDD---YVFNLDPIRVPSKYPGKKYFKGPKAGQLSCNPL 176

Query: 183 ------DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
                  W+ P         N   +  HP Q P  L+ R+++S T PGD + DP+ G G+
Sbjct: 177 GKNPGDVWVFPNVKN-----NHVEKTDHPCQFPVELVERLVLSLTNPGDAVFDPYMGVGS 231

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFN 291
           S   A K  R   G ++ ++Y++ A +R+  ++  G ++   +     +P   + 
Sbjct: 232 SVVAALKNDRVGYGCDVVKEYVEAAWERVHQLRA-GTLQTRPMHKPVYDPTQPYG 285


>gi|237742131|ref|ZP_04572612.1| chromosome partitioning protein parB [Fusobacterium sp. 4_1_13]
 gi|229429779|gb|EEO39991.1| chromosome partitioning protein parB [Fusobacterium sp. 4_1_13]
          Length = 438

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 52/261 (19%), Positives = 109/261 (41%), Gaps = 25/261 (9%)

Query: 21  DKIIKGNS--ISVLEKL-PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +++ G+S  +  ++KL   + +DL+  DPPYN+         D+   +      D  +S
Sbjct: 161 HRLMCGDSTKLEDVKKLVNNEVIDLLVTDPPYNV---------DYQAANGQKIKNDNMNS 211

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E +  F  A+      V++     ++  +          L    F I   ++W K+  +
Sbjct: 212 -ENFYRFLLAFYKNAYEVMRAGAGFYIFHADSETRAFRGALTEAGFKISQCLIWVKNQFI 270

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK----------AANEDVQMRSDWLIP 187
            + +   ++  HE  ++         +  N+               + +++Q     ++ 
Sbjct: 271 LSRQDYNWK--HEPCLYGWKEGVKHFFIRNFTQDTIQEIYSKTESMSKKELQETLKNILE 328

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
             +   R        +HPT KP  L+S+++ +S+K    +LD F GSG++   A++L+R 
Sbjct: 329 EYTTIIRENKPLKNDIHPTMKPIRLISKLIHNSSKENWNVLDLFGGSGSTLIAAEQLKRK 388

Query: 248 FIGIEMKQDYIDIATKRIASV 268
              +E  + Y D+  KR A +
Sbjct: 389 AFLMEFDEKYADVIVKRYAEM 409


>gi|194015228|ref|ZP_03053844.1| DNA methylase [Bacillus pumilus ATCC 7061]
 gi|194012632|gb|EDW22198.1| DNA methylase [Bacillus pumilus ATCC 7061]
          Length = 253

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 61/260 (23%), Positives = 94/260 (36%), Gaps = 41/260 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I + + I  +  LP KS+D+I  D PY    N                 WD     + 
Sbjct: 8   NRIYQRDCIEGMRMLPDKSIDMILCDLPYGTTRN----------------KWDIVIPLD- 50

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 +      RV+K NG + +  +         ++ +       DI W K       
Sbjct: 51  ------SLWEQYERVVKDNGAIVLTAA---QPFTSLLVSSNPKLFRYDITWDKKQITGFL 101

Query: 141 RGRRFQ-NAHETLIWASPSPKAKGYTFNYDALKA------------ANEDVQMRSDWLIP 187
             +R     HE ++     P      F +                  NE+         P
Sbjct: 102 NAKRMPLRKHEDILIFYKKPPTYNPQFTFGDSYEVRRKHSTSNYGSQNENETKSDGRRYP 161

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                     + G   HPTQKP  L   ++ + T  GDIILD   GSGT+   A +L R+
Sbjct: 162 TSIIEIPQIREKG--GHPTQKPVKLFEWLIKTFTNEGDIILDSCIGSGTTAVAATQLNRN 219

Query: 248 FIGIEMKQDYIDIATKRIAS 267
           FIG E++ +Y   A +R+ S
Sbjct: 220 FIGFEIETEYAKRANQRLDS 239


>gi|310778844|ref|YP_003967177.1| DNA methylase N-4/N-6 domain protein [Ilyobacter polytropus DSM
           2926]
 gi|309748167|gb|ADO82829.1| DNA methylase N-4/N-6 domain protein [Ilyobacter polytropus DSM
           2926]
          Length = 418

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 58/269 (21%), Positives = 109/269 (40%), Gaps = 39/269 (14%)

Query: 21  DKIIKGNS-----ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
            K++ G++     + +L  +  +   L+  DPPYN+   G       S  + +  + D  
Sbjct: 169 HKLLCGDATNKDQVQLL--MGEEKGQLVVTDPPYNVNYEG-------STKEKLKIANDNL 219

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
           S  E Y  F           L+  G ++V  +          + +  F+     VW K++
Sbjct: 220 SGNEFYY-FLLGSYSRVYESLEDGGGIYVFHADTEGINFRKAMVDAGFYFAQCCVWVKNS 278

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            +   +   +Q  HE ++      KA  +  +         D   R+D            
Sbjct: 279 LVMGRQDYHWQ--HEPILVGWKPGKAHNWYSDRKQTTVWKFDRPSRND------------ 324

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                  +HPT KP  L++  + +S+KPGDI++D F GSG++    ++L R    +E+  
Sbjct: 325 -------IHPTMKPLNLIAYPIENSSKPGDIVIDLFGGSGSTLMACQELERKCRTMEIDP 377

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRT 284
            Y+D   KR  +    G  ++T++   +T
Sbjct: 378 RYVDAIVKRYLA---SGREDITLMRDGKT 403


>gi|300933470|ref|ZP_07148726.1| ParB family DNA methylase [Corynebacterium resistens DSM 45100]
          Length = 416

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 98/252 (38%), Gaps = 34/252 (13%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G++     V   +  KS +L+  DPPYN+              D +T   D   
Sbjct: 166 RHRLVCGDATNPDDVQTLMGGKSANLVLTDPPYNVAFESS---------DGLTIRNDAMK 216

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           + +++  F  A       VL   G+ +V  +            +  F +    +W K++ 
Sbjct: 217 A-DSFYEFLLAAFTNMAGVLDKGGSAYVFHADTEGLNFRKAFIDAGFKLSGCCIWVKNSL 275

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +       +Q  HE +++         +  +                    I + ++  +
Sbjct: 276 V--LGRSPYQWQHEPVLYGWKQGAKHKWFADRKQTT---------------IWNFAKPRK 318

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           N D    HPT KP  LL+  + +ST+   IILD F GSG++   A++  R    +E+ + 
Sbjct: 319 NSD----HPTSKPLDLLAYPIRNSTQANAIILDTFAGSGSTLMAAEETDRIAYCMELDEK 374

Query: 257 YIDIATKRIASV 268
           Y  +  +R A  
Sbjct: 375 YASVILRRYADA 386


>gi|317133966|ref|YP_004089877.1| DNA methylase N-4/N-6 domain protein [Ruminococcus albus 7]
 gi|315450428|gb|ADU23991.1| DNA methylase N-4/N-6 domain protein [Ruminococcus albus 7]
          Length = 361

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 62/255 (24%), Positives = 109/255 (42%), Gaps = 28/255 (10%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
             ++ ++L KL  +S D+I  DPPY +   G   +     + +  D       F+  D  
Sbjct: 134 HADAKTILNKLKTESFDMILTDPPYRVISGGTGGKNAPKGMLSKNDG----KIFDNNDIQ 189

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
              ++  C RVLKP+   +   ++ N+ ++   +Q   F + N +VW K+N  P    R 
Sbjct: 190 FDEYIPECYRVLKPDRQAYFFTNFLNLQQLIEAVQRSGFKVHNLLVWLKNNATP---NRW 246

Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
           +    E +++               A   +N                  +  N  G KLH
Sbjct: 247 YMKNCENVLFCYKGK----------AKAISNCG-----------SKTVHQFDNIKGPKLH 285

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            T+KP  LL   + +ST+ G+ ILDPF GSG++ A +  L R     E+ + Y+++   R
Sbjct: 286 ETEKPVELLKMYIENSTEEGEWILDPFAGSGSTMAASLLLNRKVFTCEIDKKYLNVIKTR 345

Query: 265 IASVQPLGNIELTVL 279
             S+   G  +  ++
Sbjct: 346 AISILKSGEDDRNLV 360


>gi|256026845|ref|ZP_05440679.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
           D11]
 gi|289764838|ref|ZP_06524216.1| chromosome partitioning protein parB [Fusobacterium sp. D11]
 gi|289716393|gb|EFD80405.1| chromosome partitioning protein parB [Fusobacterium sp. D11]
          Length = 438

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 116/277 (41%), Gaps = 28/277 (10%)

Query: 21  DKIIKGNS--ISVLEKL-PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +++ G+S  +  ++KL   + +DL+  DPPYN+         D+   +      D  +S
Sbjct: 161 HRLMCGDSTKLEDVKKLVNNEVIDLLVTDPPYNV---------DYQAANGQKIKNDNMNS 211

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E +  F  A+      V++     ++  +          L    F I   ++W K+  +
Sbjct: 212 -ENFYRFLLAFYKNAYEVMRAGAGFYIFHADSETKAFRGALIEAGFKISQCLIWVKNQFI 270

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK----------AANEDVQMRSDWLIP 187
            + +   ++  HE  ++         +  N+               + +++Q     ++ 
Sbjct: 271 LSRQDYNWK--HEPCLYGWKEGVKHFFIRNFTQDTIQEIYSKTESMSKKELQETLKNILE 328

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
             +   R        +HPT KP  L+S+++ +S+K    +LD F GSG++   A++L+R 
Sbjct: 329 EYTTIIRENKPLKNDIHPTMKPIRLISKLIHNSSKENWNVLDLFGGSGSTLIAAEQLKRK 388

Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
              +E  + Y D+  KR A    +G  ++ +L   +T
Sbjct: 389 AFLMEFDEKYADVIVKRYAE---MGKKDIKLLRNGKT 422


>gi|156740880|ref|YP_001431009.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156232208|gb|ABU56991.1| DNA methylase N-4/N-6 domain protein [Roseiflexus castenholzii DSM
           13941]
          Length = 281

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 63/299 (21%), Positives = 109/299 (36%), Gaps = 64/299 (21%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++II  + +  L  L  +S+DL    PPY                       D    ++ 
Sbjct: 11  NQIIHADCLQELAFLRDESIDLTLFSPPY-----------------------DGIRDYKK 47

Query: 81  YDAFTRAWL-LACRRVLKPNG-TLWVIGSYHNIFRIG--------TMLQNLNFWILNDIV 130
             +F  + L     RV K  G  + VIG     F             +  + + +   ++
Sbjct: 48  NWSFDFSMLGRQLYRVTKDGGVAIVVIGDGTKQFAKSLTSFRLAVNWVDEVGWKLFECVI 107

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT------------------------- 165
           + +      +  +RF+  HE ++      + K +                          
Sbjct: 108 YHRDGNPGAWWTQRFRVDHEYVLIFFKGERPKTFQKDHLMIPSKHAGKIYSGTDRLTNGG 167

Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
           F     KA N      + W     +          + LHP   P+ L   +++  ++PGD
Sbjct: 168 FKRITPKAVNPMKCRGTVWQYATSN----TEGNRLKLLHPATFPDKLAEDLILCFSQPGD 223

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
           I+LDP  GSGT+  VA+   R +IGIE+ Q+Y +IA KRI       N+E   +  + +
Sbjct: 224 IVLDPMCGSGTTCVVARNNNRKYIGIEISQEYCEIARKRIEK--EFQNVEQRTMFQEDS 280


>gi|295108399|emb|CBL22352.1| DNA modification methylase [Ruminococcus obeum A2-162]
          Length = 321

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 119/298 (39%), Gaps = 49/298 (16%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKG--NSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
           M ++ SL    + +     + K++    +    L++LP KS+ LI  DPPYNL+L G   
Sbjct: 19  MRKEESLKNKTSSDFEMPAEIKLLHSISDCGDFLKQLPDKSIQLICIDPPYNLELAG--- 75

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR----- 113
                        WD    +E Y  +   W+    RVL  NG++ + G            
Sbjct: 76  -------------WDI---YENYIEWASKWIDEAYRVLSDNGSMVIFGGIQFRDAKSGDL 119

Query: 114 ---IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
              I  + +N  F ++N I+W   N M     R F N HE  IW      +  Y F+ D+
Sbjct: 120 LDIIQYIRKNTKFKLVNTIIWHYKNGMSAH--RFFANRHEEAIWLVK---SNNYYFDLDS 174

Query: 171 LKAA---------------NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
           ++                 N +   +      +        N      HPTQKP A++ R
Sbjct: 175 VRVPYSEEDLKVALRDKRLNPETTRKGKNPTNVWEIGRLNGNSKERVGHPTQKPVAIIER 234

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
            + + + PG  +LD F GSGT G V     R+ +  +     +D   K ++ ++ LG 
Sbjct: 235 FIKALSYPGATVLDFFAGSGTVGRVCINEGRNCLMCDSDNKSLDYFAKHLSLMEELGQ 292


>gi|307294546|ref|ZP_07574388.1| DNA methylase N-4/N-6 domain protein [Sphingobium chlorophenolicum
           L-1]
 gi|306879020|gb|EFN10238.1| DNA methylase N-4/N-6 domain protein [Sphingobium chlorophenolicum
           L-1]
          Length = 438

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 62/274 (22%), Positives = 109/274 (39%), Gaps = 16/274 (5%)

Query: 20  KDKIIKGNSISVL---EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G++   L   + +  +  +LI  DPPY   + G +        +       + S
Sbjct: 167 RHRLVVGDARDPLVYEKLMAGERAELIMTDPPYGCAIAGNVSGLGRVKHENFVMGAGETS 226

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E      R       +  +     ++   +     +    Q +   + N IVW K+N 
Sbjct: 227 LPEFAATILRPAFKLMAQHARSGAIAFICTDWRAAPHLLDAAQGVFHELKNLIVWAKTNA 286

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
                G  +++AHE +     SP      F         E  + RS+      +   R  
Sbjct: 287 G---MGTFYRSAHELIYAFKVSPGTHINNF------GLGEGGRHRSNVWTYAGANVFRAG 337

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                  H T KP+ +++  L+  ++ G IILDPF GSGT+   A+   R   GIE+   
Sbjct: 338 RLADLADHSTVKPKKMIADALLDCSRRGGIILDPFSGSGTTLVAAEMTGRRGFGIELDPK 397

Query: 257 YIDIATKRIAS---VQP-LGNIELTVLTGKRTEP 286
           Y D+  +R+A     +P LG + L+ +   R EP
Sbjct: 398 YADVILRRVAEEAGAEPTLGGVPLSEIAAMRAEP 431


>gi|298346373|ref|YP_003719060.1| ParB family DNA methylase [Mobiluncus curtisii ATCC 43063]
 gi|298236434|gb|ADI67566.1| ParB family DNA methylase [Mobiluncus curtisii ATCC 43063]
          Length = 418

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 55/288 (19%), Positives = 113/288 (39%), Gaps = 39/288 (13%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++  ++     V   +  K  +L+  DPPYN+          +S +    D  D   
Sbjct: 166 RHRLMCADATNPADVETLMDGKQANLVVTDPPYNVDFK------SNSGLKIAGDKQD--- 216

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             + +  F  A        L+  G+ +V  +            +  F++    +W K + 
Sbjct: 217 -TDTFYQFLLAAFTNMADALEKGGSAYVFHADTEGLNFRKAFLDAGFYLSGCCIWVKDSL 275

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +       +Q  HE +++      +  +  N                    + + ++  +
Sbjct: 276 V--LGRSPYQWQHEPVLYGWKKDGSHAWYANRKQTT---------------VWNFAKPRK 318

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           N D    HPT KP  LL+  + +ST+   IILD F GSG++   A+   R+   +E+ + 
Sbjct: 319 NSD----HPTSKPLDLLAYPIRNSTQTNAIILDTFAGSGSTLMAAQATDRTCYCMELDEK 374

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQI 304
           Y  +  +R A        +   +T +R+  + A+  LV++ + +P Q 
Sbjct: 375 YASVIVRRYAEATG----DAAGITCERSGGQYAYLDLVKK-VERPKQK 417


>gi|313895572|ref|ZP_07829128.1| DNA (cytosine-5-)-methyltransferase [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975698|gb|EFR41157.1| DNA (cytosine-5-)-methyltransferase [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 421

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 54/280 (19%), Positives = 113/280 (40%), Gaps = 34/280 (12%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K ++I G+S    +    L ++ V+L+  DPPY + L     +  +          D  +
Sbjct: 169 KHRVICGDSTLPGTYERLLGSEKVNLVCTDPPYFVALESSSGKIKN----------DDLN 218

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             +AY  F ++  +A    +  + +++V  +           ++  F +   +VW+K   
Sbjct: 219 DKDAY-EFLKSAFIAFHSAMATDASIYVFYATAKARIFHDAYEDAGFKVGAGLVWKKDRL 277

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +      ++   HE +IW         +  +         D                +  
Sbjct: 278 VLTRTDWKYI--HEPIIWGWRKDGRHRWYGDQKQTTVFAFDRI--------------KDS 321

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
            KDG   HP+ KP  L++ ++   T+   I+LD F GS ++    ++L R   G+E++  
Sbjct: 322 KKDGC-GHPSSKPVPLIAYLVKQCTQTNGIVLDGFLGSASTLIACEQLNRICYGVELEPK 380

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
           ++D+A +R   +Q  G     V   +R   R+ +  +++ 
Sbjct: 381 FVDVAVERY--IQSKGGNAEDVFL-ERDGERIPYADVLKA 417


>gi|315654952|ref|ZP_07907857.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii ATCC
           51333]
 gi|315490913|gb|EFU80533.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii ATCC
           51333]
          Length = 418

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 96/252 (38%), Gaps = 34/252 (13%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++  ++     V   +  K  +L+  DPPYN+          +S +    D  D   
Sbjct: 166 RHRLMCADATNPGDVETLMDGKQANLVVTDPPYNVDFK------SNSGLKIAGDKQD--- 216

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             + +  F  A        L   G+ +V  +           Q+  F++    +W K + 
Sbjct: 217 -TDTFYQFLLAAFTNMAASLAKGGSAYVFHADTEGLNFRRAFQDAGFYLSGCCIWVKDSL 275

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +       +Q  HE +++      +  +  +                    + + ++  +
Sbjct: 276 V--LGRSPYQWQHEPVLYGWKKDGSHAWYADRKQTT---------------VWNFAKPRK 318

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           N D    HPT KP  LL+  + +ST+   I+LD F GSG++   A+   R+   +E+ + 
Sbjct: 319 NSD----HPTSKPLDLLAYPIRNSTQTNAIVLDTFAGSGSTLMAAEATDRTCYCMELDEK 374

Query: 257 YIDIATKRIASV 268
           Y  +  +R A  
Sbjct: 375 YASVIVRRYAEA 386


>gi|15601210|ref|NP_232841.1| haemagglutinin associated protein [Vibrio cholerae O1 biovar eltor
           str. N16961]
 gi|121586498|ref|ZP_01676285.1| haemagglutinin associated protein [Vibrio cholerae 2740-80]
 gi|121726174|ref|ZP_01679472.1| haemagglutinin associated protein [Vibrio cholerae V52]
 gi|147672291|ref|YP_001215657.1| haemagglutinin associated protein [Vibrio cholerae O395]
 gi|153820932|ref|ZP_01973599.1| haemagglutinin associated protein [Vibrio cholerae B33]
 gi|227812021|ref|YP_002812031.1| DNA methylase N-4/N-6 [Vibrio cholerae M66-2]
 gi|229506370|ref|ZP_04395879.1| hemagglutinin associated protein [Vibrio cholerae BX 330286]
 gi|229509496|ref|ZP_04398978.1| hemagglutinin associated protein [Vibrio cholerae B33]
 gi|229516666|ref|ZP_04406113.1| hemagglutinin associated protein [Vibrio cholerae RC9]
 gi|229605937|ref|YP_002876641.1| hemagglutinin associated protein [Vibrio cholerae MJ-1236]
 gi|254849623|ref|ZP_05238973.1| hemagglutinin associated protein [Vibrio cholerae MO10]
 gi|297582334|ref|ZP_06944240.1| hemagglutinin associated protein [Vibrio cholerae RC385]
 gi|298499247|ref|ZP_07009053.1| DNA methylase [Vibrio cholerae MAK 757]
 gi|48357|emb|CAA45727.1| haemagglutinin associated protein [Vibrio cholerae]
 gi|9657850|gb|AAF96353.1| haemagglutinin associated protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121549323|gb|EAX59354.1| haemagglutinin associated protein [Vibrio cholerae 2740-80]
 gi|121631393|gb|EAX63765.1| haemagglutinin associated protein [Vibrio cholerae V52]
 gi|126521515|gb|EAZ78738.1| haemagglutinin associated protein [Vibrio cholerae B33]
 gi|146314674|gb|ABQ19214.1| haemagglutinin associated protein [Vibrio cholerae O395]
 gi|227011163|gb|ACP07374.1| DNA methylase N-4/N-6 [Vibrio cholerae M66-2]
 gi|227015068|gb|ACP11277.1| DNA methylase N-4/N-6 [Vibrio cholerae O395]
 gi|229346547|gb|EEO11518.1| hemagglutinin associated protein [Vibrio cholerae RC9]
 gi|229353446|gb|EEO18384.1| hemagglutinin associated protein [Vibrio cholerae B33]
 gi|229356721|gb|EEO21639.1| hemagglutinin associated protein [Vibrio cholerae BX 330286]
 gi|229372423|gb|ACQ62845.1| hemagglutinin associated protein [Vibrio cholerae MJ-1236]
 gi|254845328|gb|EET23742.1| hemagglutinin associated protein [Vibrio cholerae MO10]
 gi|297533438|gb|EFH72293.1| hemagglutinin associated protein [Vibrio cholerae RC385]
 gi|297541228|gb|EFH77279.1| DNA methylase [Vibrio cholerae MAK 757]
          Length = 230

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 92/243 (37%), Gaps = 29/243 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KI + +++  L+ L   SVDL   DPPY      +       L ++ + S   FS F   
Sbjct: 16  KIYQMDAVDWLKTLENCSVDLFITDPPYESLEKYRQIGTTTRLKESKSSSNQWFSVFP-- 73

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           +           RVLK     ++      +F    + +++ F     IVW K        
Sbjct: 74  NTRFEELFREVYRVLKKGSHFYLFCDQETMFLAKPIAESVGFKFWKPIVWDKC---AIGM 130

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G  ++  +E +++     +                         +   S  + L  K   
Sbjct: 131 GYHYRARYEFILFFEKGKRK------------------------LNDLSVPDVLEYKRVW 166

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K +PT+KP  LL  ++  S+   +I+ D FFGSG++   A  L R +IG ++     +  
Sbjct: 167 KGYPTEKPVELLEVLIRQSSSENEIVADSFFGSGSTLIAANNLSRKYIGCDISSSAHEYF 226

Query: 262 TKR 264
             R
Sbjct: 227 KNR 229


>gi|291546437|emb|CBL19545.1| DNA modification methylase [Ruminococcus sp. SR1/5]
          Length = 248

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 53/264 (20%), Positives = 99/264 (37%), Gaps = 44/264 (16%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            +++G+ + ++ ++P  S+D++ +D PY                      WD   +    
Sbjct: 5   TLLQGDCLELMNRIPDSSIDMVLSDLPYGTTR----------------CRWDAPIN---- 44

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
               +      RRV+K NG + +  +         ++ +       + +WRK+ P     
Sbjct: 45  ---LQELWEQYRRVVKENGAIALFSA---QPFTTELISSNKAMYRYEWIWRKTQPSGFMN 98

Query: 142 GRRFQ-NAHETL--IWASPSPKAKGYTFNYDALKAANED--------VQMRSDWLIPICS 190
            ++     HE +   +  P       T  +    A               R +      S
Sbjct: 99  AKKMPLRTHENIEIFYRKPPTYNPQMTHGHQRKTATAYGTRESDGSSCYGREERNYTYDS 158

Query: 191 GS-------ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
                    +       ++LHPTQKP  LL  ++ + T PG+ +LD   G+G++G     
Sbjct: 159 TDRYPVDVLQYSTGDKSKRLHPTQKPVDLLEYLVKTYTNPGETVLDNCMGAGSTGVACLN 218

Query: 244 LRRSFIGIEMKQDYIDIATKRIAS 267
             R F+GIE+  +Y  IA +RI  
Sbjct: 219 TGREFVGIELDPEYYQIAKERIEQ 242


>gi|121607621|ref|YP_995428.1| DNA methylase N-4/N-6 domain-containing protein [Verminephrobacter
           eiseniae EF01-2]
 gi|121552261|gb|ABM56410.1| DNA methylase N-4/N-6 domain protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 274

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 59/280 (21%), Positives = 96/280 (34%), Gaps = 49/280 (17%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I  G+S   L +L   SVDLI   PPY  Q         H                + Y 
Sbjct: 7   IYLGDSKDQLARLAVDSVDLIVTSPPYADQRKDTYGGIHH----------------DKYV 50

Query: 83  AFTRAWLLACRRVLKPNGTLWVIG--------SYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            +         RVLKP GT  +              +  +   ++   +    + +W K 
Sbjct: 51  EWFLPISGQLLRVLKPTGTFILNIKEKVVDGERSTYVMELIIAMRKQGWLWTEEFIWHKK 110

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA--------------------- 173
           N  P     RF+++ E L+  + +     Y                              
Sbjct: 111 NSYPGKWPNRFRDSWERLLQFNKNRHFNMYQEEVMVPMGDWAKARLKKLSDTDKIRDTSK 170

Query: 174 ----ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
                 +++    D      +    L  +   K H    PE L    +   TK  D +LD
Sbjct: 171 VGSGFGKNISNWIDRGKAYPTNVLHLATECNNKNHSAAFPEELPEWFIKLFTKRLDTVLD 230

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           PF GSGT+  VA K++R  IGI++  +Y D+  +++  ++
Sbjct: 231 PFMGSGTTLMVANKMQRHSIGIDIVPEYCDMVKQQLRPIE 270


>gi|110004439|emb|CAK98777.1| putative adenine specific dna methyltransferase protein
           [Spiroplasma citri]
          Length = 243

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 59/256 (23%), Positives = 109/256 (42%), Gaps = 33/256 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH---SLVDAVTDSWDKFSSF 78
           K+I G+++  ++ L   SVDLI  DPPY   L+ +     +   ++  ++    +     
Sbjct: 8   KLINGDALEFIKTLENDSVDLILTDPPYLYNLSKRENEQKNEKSNITKSINKYINAIYDN 67

Query: 79  EAYDAF-TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--ILNDIVWRKSN 135
             +++F    +L    R+ K    L     + N  +I   L  +     + + I+W K+N
Sbjct: 68  NLHNSFDINTYLDEFYRISKNKFMLI----WMNRQQIIDYLDWVRKKDMLYDFILWNKTN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           PMP          +  +I++                           ++     S     
Sbjct: 124 PMPTNNHIYQDKEYCMIIYSKKH---------------------RIPNYKNDYESKKTIF 162

Query: 196 RNKDGEKL--HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
               G+KL  HPT+KP  + +R++   +K  D+ILD F GSGT+    ++L+R ++G E+
Sbjct: 163 NYSIGKKLTRHPTEKPLYIFNRLISKYSKENDLILDCFMGSGTTAYACEQLKRKWLGCEI 222

Query: 254 KQDYIDIATKRIASVQ 269
             +Y  I  KR+  +Q
Sbjct: 223 NNEYYKIIKKRLKDIQ 238


>gi|257088347|ref|ZP_05582708.1| DNA methylase [Enterococcus faecalis D6]
 gi|256996377|gb|EEU83679.1| DNA methylase [Enterococcus faecalis D6]
          Length = 416

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/260 (18%), Positives = 98/260 (37%), Gaps = 41/260 (15%)

Query: 21  DKIIKGNSI-----SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
            +++ G+S       VL  +  K  +L   DPPYN+   G   +  +             
Sbjct: 169 HRLVCGDSTKQETYDVL--MDGKLANLTVTDPPYNVNYEGSAGKIKN-----------DN 215

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            + EA+  F         + +  + +++V  +            +  F++    +W+K +
Sbjct: 216 MANEAFYTFLYDAFSCMEKSMADDASIYVFHADTEGLNFRKAFVDAGFYLSGTCIWKKQS 275

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            +       +Q  HE +++         +                  ++  P  +G    
Sbjct: 276 LV--LGRSPYQWQHEPVLYGWKKKGKHQWY--------TGRKESTIWEFDKPKKNGD--- 322

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                   HPT KP  LL+  + +S+    I+LDPF GSG++    ++  R    IE+ +
Sbjct: 323 --------HPTMKPIPLLAYPITNSSMSNCIVLDPFGGSGSTLIACEQTNRICHTIELDE 374

Query: 256 DYIDIATKRIASVQPLGNIE 275
            ++D+   R   ++ +G+ E
Sbjct: 375 KFVDVIVNRY--IEQVGSAE 392


>gi|15644891|ref|NP_207061.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter pylori
           26695]
 gi|2313355|gb|AAD07329.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter pylori
           26695]
          Length = 252

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 94/254 (37%), Gaps = 27/254 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+ +SVLE       DL     PYNL +  Q                D F +++ Y 
Sbjct: 12  LYHGD-VSVLETFEKGFYDLCITSLPYNLSIEYQGS--------------DDFRAYDDYL 56

Query: 83  AFTRAWLLACRRVLKPNGTLW--------VIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            + + WL  C    K    L           G       I  + +   +   N I+W +S
Sbjct: 57  NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNES 116

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N         +  A       + +P      F  +  K   +   +  +  +   +G   
Sbjct: 117 NISRRTAWGSWLQASAP---YAIAPVELIVVFYKNEYKRQKQTSTISKEEFLLYTNGLWN 173

Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
              +  ++L HP   P  L  R +   +   D I DPF GSGT+   A  L R  +G+++
Sbjct: 174 FSGESKKRLKHPAPFPRELPRRCIQLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLKI 233

Query: 254 KQDYIDIATKRIAS 267
           +++Y +++ KRI  
Sbjct: 234 EKEYCELSKKRILE 247


>gi|22299025|ref|NP_682272.1| adenine specific DNA methylase [Thermosynechococcus elongatus BP-1]
 gi|22295207|dbj|BAC09034.1| Adenine specific DNA methylase [Thermosynechococcus elongatus BP-1]
          Length = 385

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 128/298 (42%), Gaps = 49/298 (16%)

Query: 17  FEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN----------GQLYRPDHS 63
            ++++ +I G++  V+  L       +DLI+ DPP+++  +          G+  + + S
Sbjct: 79  DDFRNMLIWGDNKLVMAALLEQFRGKIDLIYIDPPFDVGADFTMQVQIGEEGEAVQKEQS 138

Query: 64  LVDAV--TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
           +++AV   D+W K +  ++Y       L   R +L   G+++V   +     +  +L ++
Sbjct: 139 ILEAVAYRDTWGKGT--DSYLHMMYERLTLMRELLSERGSIYVHCDWRMNAFLRQVLDDI 196

Query: 122 --NFWILNDIVWRKSNPM-PNFRGRRFQNAHETLIWASPSPKA-------KGYTFN---- 167
                 LN I+W       P   G  F   H+ ++  + S          K Y       
Sbjct: 197 FGRDRFLNHIIWAYKTGGIPENVG--FSKKHDDILIYTKSDTPVFNQLLQKSYVPTLPEP 254

Query: 168 ---------------YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEA 211
                           +         + R+  +  +    + +   D +     TQKPEA
Sbjct: 255 TTISGKQLGVQRDEVCELCGVGRPGQKYRNVIMRDVWDDIQSIFRNDQQTTGFDTQKPEA 314

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           LL RI+ +S+  GD++ D F GSGT+ AVA+KL R +IG+++ +  I    KR+  VQ
Sbjct: 315 LLERIIKASSNEGDLVADFFCGSGTTLAVAEKLGRRWIGVDLGRYAIHTTRKRLIQVQ 372


>gi|299132505|ref|ZP_07025700.1| DNA methylase N-4/N-6 domain protein [Afipia sp. 1NLS2]
 gi|298592642|gb|EFI52842.1| DNA methylase N-4/N-6 domain protein [Afipia sp. 1NLS2]
          Length = 247

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 63/268 (23%), Positives = 97/268 (36%), Gaps = 46/268 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++ G+   ++   P    D+I ADPPY                           +  A+
Sbjct: 2   TVLTGDCREIMP--PHGPFDMILADPPYG-------------------------DTSLAW 34

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D     W+   R  L   G+LWV GS                 I  +IVW K N    F 
Sbjct: 35  DRRVEGWIALAREALNLTGSLWVFGSLRCFMATADRFTEAGLRIAQEIVWEKQNGTG-FH 93

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP-------------- 187
             RF+  HE  +   P+  A    +N            +R     P              
Sbjct: 94  NDRFKRVHELAVQFYPAETAWRDIYNDVQTTPDATARTVRRKQRPPHTGQIDAGHYVSHD 153

Query: 188 ----ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
               +      +RN  G  +HPT+KP +LL  ++ +S   G ++ D F GSG++G   + 
Sbjct: 154 GGPRLMRSVIYVRNCHGRAIHPTEKPSSLLEILIRTSCPEGGLVGDWFAGSGSAGEACRL 213

Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPL 271
             R ++G E+     + A  RIA+V P 
Sbjct: 214 SGRRYLGCEIDAAMAERACARIAAVLPF 241


>gi|89076177|ref|ZP_01162534.1| haemagglutinin associated protein [Photobacterium sp. SKA34]
 gi|89048127|gb|EAR53712.1| haemagglutinin associated protein [Photobacterium sp. SKA34]
          Length = 219

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 58/250 (23%), Positives = 102/250 (40%), Gaps = 37/250 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN----GQLYRPDHSLVDAVTDSWDKFSS 77
           +I + ++I  L  LP +S+DL+  DPPY         G+  R   S     ++ W     
Sbjct: 2   QIFQKDAIEWLTALPDQSIDLMITDPPYESLEKHRSVGRTTRLKQS--KGSSNQWFDIFP 59

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E +++     L    RVLK N   ++      +F I  + + + F     IVW K   +
Sbjct: 60  NERFESL----LTQAYRVLKQNSHFYLFCDQETMFHIKPIAEKVGFKFWKPIVWDK---V 112

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
               G  ++  +E +++     +                         +   S  + L  
Sbjct: 113 AIGMGYHYRARYEFILFFEKGKRK------------------------LNNLSIPDVLEC 148

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K   + +PT+KP  LL  ++  S+  GD++ DPFFGSG++   A KL R   G ++    
Sbjct: 149 KRVYRGYPTEKPVPLLEILIEQSSVEGDVVADPFFGSGSTLVAADKLSRQAWGSDISDSA 208

Query: 258 IDIATKRIAS 267
                +R++S
Sbjct: 209 HQHLKQRLSS 218


>gi|256617090|ref|ZP_05473936.1| DNA methylase [Enterococcus faecalis ATCC 4200]
 gi|256596617|gb|EEU15793.1| DNA methylase [Enterococcus faecalis ATCC 4200]
          Length = 416

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 47/260 (18%), Positives = 98/260 (37%), Gaps = 41/260 (15%)

Query: 21  DKIIKGNSI-----SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
            +++ G+S       VL  +  K  +L   DPPYN+   G   +  +             
Sbjct: 169 HRLVCGDSTKQETYDVL--MDGKLANLTVTDPPYNVNYEGSAGKIKN-----------DN 215

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            + EA+  F         + +  + +++V  +            +  F++    +W+K +
Sbjct: 216 MANEAFYTFLYDAFSCMEKSMADDASIYVFHADTEGLNFRKAFVDAGFYLSGTCIWKKQS 275

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            +       +Q  HE +++         +                  ++  P  +G    
Sbjct: 276 LV--LGRSPYQWQHEPVLYGWKKKGKHQWY--------TGRKESTIWEFDKPKKNGD--- 322

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                   HPT KP  LL+  + +S+    I+LDPF GSG++    ++  R    IE+ +
Sbjct: 323 --------HPTMKPIPLLAYPITNSSMSNCIVLDPFGGSGSTLIACEQTNRICHTIELDE 374

Query: 256 DYIDIATKRIASVQPLGNIE 275
            ++D+   R   ++ +G+ E
Sbjct: 375 KFVDVIVNRY--IEQVGSAE 392


>gi|255746753|ref|ZP_05420700.1| hemagglutinin associated protein [Vibrio cholera CIRS 101]
 gi|262153440|ref|ZP_06028572.1| N6 adenine-specific DNA methyltransferase [Vibrio cholerae INDRE
           91/1]
 gi|262168142|ref|ZP_06035840.1| N6 adenine-specific DNA methyltransferase [Vibrio cholerae RC27]
 gi|255736507|gb|EET91905.1| hemagglutinin associated protein [Vibrio cholera CIRS 101]
 gi|262023385|gb|EEY42088.1| N6 adenine-specific DNA methyltransferase [Vibrio cholerae RC27]
 gi|262030797|gb|EEY49429.1| N6 adenine-specific DNA methyltransferase [Vibrio cholerae INDRE
           91/1]
          Length = 217

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 92/243 (37%), Gaps = 29/243 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KI + +++  L+ L   SVDL   DPPY      +       L ++ + S   FS F   
Sbjct: 3   KIYQMDAVDWLKTLENCSVDLFITDPPYESLEKYRQIGTTTRLKESKSSSNQWFSVFP-- 60

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           +           RVLK     ++      +F    + +++ F     IVW K        
Sbjct: 61  NTRFEELFREVYRVLKKGSHFYLFCDQETMFLAKPIAESVGFKFWKPIVWDKC---AIGM 117

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G  ++  +E +++     +                         +   S  + L  K   
Sbjct: 118 GYHYRARYEFILFFEKGKRK------------------------LNDLSVPDVLEYKRVW 153

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K +PT+KP  LL  ++  S+   +I+ D FFGSG++   A  L R +IG ++     +  
Sbjct: 154 KGYPTEKPVELLEVLIRQSSSENEIVADSFFGSGSTLIAANNLSRKYIGCDISSSAHEYF 213

Query: 262 TKR 264
             R
Sbjct: 214 KNR 216


>gi|53802972|ref|YP_115293.1| prophage MuMc02, DNA methyltransferase [Methylococcus capsulatus
           str. Bath]
 gi|53756733|gb|AAU91024.1| prophage MuMc02, DNA methyltransferase [Methylococcus capsulatus
           str. Bath]
          Length = 265

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 61/259 (23%), Positives = 90/259 (34%), Gaps = 32/259 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL----------NGQLYRPDHSLVDAVTDS 71
           ++ + +   V   +   SV  +  DPPY                +    D S    + D 
Sbjct: 10  RLFQNDFREVASLITPGSVAAVITDPPYGSGGFTVKDRLKSSKTKYVSSDASYQKTLPDI 69

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
                  EA+    +A     R VL   G L +   + N  ++  ++      +   + W
Sbjct: 70  DGDSLHPEAWKELMKAACAVARSVLMNGGVLAMFIDWRNKPQLQEIIHGSGLALRGCVAW 129

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
            K N         F+N  E L+WA+  P        Y                      G
Sbjct: 130 DKGNGA-RPMKNGFKNQAEYLLWATQGPTPTREPPVY--------------------LPG 168

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
             R       K+H TQKP AL+  I+     PG  + D F GSGT+G  A K  R FIG 
Sbjct: 169 VLRHSTLSNGKVHITQKPLALMEDIVQ-VCPPGGTVFDMFMGSGTTGVAALKHGRRFIGC 227

Query: 252 EMKQDYIDIATKRIASVQP 270
           E   +Y D + +R     P
Sbjct: 228 ESVPEYFDASVRRCREACP 246


>gi|160931951|ref|ZP_02079343.1| hypothetical protein CLOLEP_00784 [Clostridium leptum DSM 753]
 gi|156868993|gb|EDO62365.1| hypothetical protein CLOLEP_00784 [Clostridium leptum DSM 753]
          Length = 253

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 62/269 (23%), Positives = 101/269 (37%), Gaps = 41/269 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYN------------LQLNGQLYRPDHSLVDAVTD 70
           II G+++ V++    K+ D +  DPPY                      P+++L D   D
Sbjct: 11  IIHGDTLQVIKSFQPKTFDALITDPPYASGGWKPSEKNRTTSQKYSSMDPENALPDFDGD 70

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
           + D+ S    +  +   WL   R+  KP   + +   +     I   LQ   +     +V
Sbjct: 71  NRDQRS----WTRWMAEWLSDARKACKPGAPVCLFIDWRQYPSITDALQWAGWIWRGVVV 126

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W K    P     RF+   E ++W S  P                     R    +P   
Sbjct: 127 WDKLTSRPQ--KGRFRQQSEYIVWGSNGPM-----------------PISRPVGCLP--- 164

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           G  R  N    ++H T+KP  L+  I+     PG  ILDPF G+GT+   +       +G
Sbjct: 165 GVYRYANPQ-NRIHVTEKPLPLMREIIKICV-PGGRILDPFCGAGTTVLASVMEGYEAVG 222

Query: 251 IEMKQDYIDIATKRIA-SVQPLGNIELTV 278
           IE+   Y  +   R+  +++     E T 
Sbjct: 223 IEVTDAYYKLGVDRVRFALEAQEKSEDTA 251


>gi|323345090|ref|ZP_08085314.1| DNA methylase N-4/N-6 [Prevotella oralis ATCC 33269]
 gi|323094360|gb|EFZ36937.1| DNA methylase N-4/N-6 [Prevotella oralis ATCC 33269]
          Length = 280

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 63/271 (23%), Positives = 102/271 (37%), Gaps = 47/271 (17%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G  +S ++K+  KSV+ I   PPYNL      Y  +               SF  ++   
Sbjct: 25  GECVSTMKKMREKSVNTIVTSPPYNLNKKYGKYNDNR--------------SFAEWENLI 70

Query: 86  RAWLLACRRVLKPNGTLWVIGSY----------HNIFRIGTMLQNLNFWILNDIVWRKSN 135
                A +RVL  +G+  +  S                   + +   + + N IVW  +N
Sbjct: 71  GRVAEAAKRVLTDDGSFLLNVSPVPDKKTKEIIPLDAMAYFIFKRHGYALRNSIVWHFNN 130

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFN-------------------YDALKAANE 176
                   R     E ++W         +  N                    +     N 
Sbjct: 131 MQNCV--NRLSGRWEAILWFVKDIDNYQFNLNDIRIPYITKNDKRLEGGAGRNPTDTWNF 188

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
           DV+    W     +   +  NK G   HP   P  ++ RI+  +T  GD++LDPF GSGT
Sbjct: 189 DVEGSDFWYFDRVNNMTK--NKLGLAEHPCIFPTPMIERIIKMTTHKGDVVLDPFLGSGT 246

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           +   A+KL R  +GIE+ + ++ I  KR+ +
Sbjct: 247 TLVAAQKLGRVGLGIELDKKFVPIIKKRVDN 277


>gi|330989854|gb|EGH87957.1| DNA methylase N-4/N-6 domain-containing protein [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 264

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 65/274 (23%), Positives = 103/274 (37%), Gaps = 40/274 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++ KG+ + +++ +P  SVD+I  D PY    N                 WD        
Sbjct: 11  QLYKGDCLELMKSIPDASVDMILCDLPYGTTQN----------------KWDCPID---- 50

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
              +R W     R+ KP+  +  I +    F        +       I  + +       
Sbjct: 51  --LSRLW-PEYWRICKPSAAI--ILTAQTPFDKILGASQIGHLKYEWIWEKTAATGFLNA 105

Query: 142 GRRFQNAHET-LIWASPSPKAK-----GYTF--------NYDALKAANEDVQMRSDWLIP 187
            +    AHE  L++    P        G+T         N+ A    +  V+   +    
Sbjct: 106 KKSPLKAHENVLVFYRKQPTYNPAMTAGHTIKRTNASYANHGANYGKSSSVRAPYESTER 165

Query: 188 ICSGSERLRNKDGEK-LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                ++L   +  K  HPTQKP AL+  ++ + T  GDI+LD   GSGT+G       R
Sbjct: 166 YPRSVQKLPKDNRLKNQHPTQKPVALMEYLIRTYTNEGDIVLDNCMGSGTTGVACIHSGR 225

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
            FIGIE  +     A+ RIAS   L N  +  + 
Sbjct: 226 RFIGIERDEKIFGTASDRIASAIALRNTPVPQIE 259


>gi|313896438|ref|ZP_07829989.1| DNA (cytosine-5-)-methyltransferase [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312974862|gb|EFR40326.1| DNA (cytosine-5-)-methyltransferase [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 421

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 56/280 (20%), Positives = 113/280 (40%), Gaps = 34/280 (12%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K ++I G+S    +    L ++ V+L+  DPPY +QL     +  +          D  +
Sbjct: 169 KHRVICGDSTLPETYERLLGSEKVNLVCTDPPYMIQLESTSGKIKN----------DDLN 218

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             +AY  F ++   A   V+  + +++V  +           ++  F +   +VW+K   
Sbjct: 219 DKDAY-EFLKSAFTAFHSVMATDASIYVFYATAKARIFHDAYEDAGFKVGAGLVWKKDRL 277

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +      ++   HE +IW         +  +         D                +  
Sbjct: 278 VLTRTDWKYI--HEPIIWGWRKDGRHRWYGDQKQTTVFAFDRI--------------KDS 321

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
            KDG   HP+ KP  L++ ++   T+   I+LD F GS ++     +L R   G+E++  
Sbjct: 322 KKDGC-GHPSSKPVPLIAYLVKQCTQTNGIVLDGFLGSASTLIACDQLGRICYGVELEAK 380

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
           ++D+A +R   +Q  G     V   +R   R+ +  +++ 
Sbjct: 381 FVDVAVERY--IQSKGGNAEDVFL-ERDGERIPYADVLKA 417


>gi|149907979|ref|ZP_01896647.1| haemagglutinin associated protein [Moritella sp. PE36]
 gi|149808985|gb|EDM68916.1| haemagglutinin associated protein [Moritella sp. PE36]
          Length = 222

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 62/249 (24%), Positives = 103/249 (41%), Gaps = 29/249 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+ K +++  L+ LP +SVDL+  DPPY      +       L ++   S   FS F   
Sbjct: 2   KLHKIDAVDWLKSLPNESVDLVITDPPYESLEKHRKIGTTTRLKNSAGSSNQWFSIFPNS 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D    A +    RVLK N   ++      +F I  + + L F     IVW K        
Sbjct: 62  D--FPALVEQIYRVLKKNSHFYLFCDQETMFVIKPIAEELGFKFWKPIVWDKC---AIGM 116

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G  ++  +E +++     +                      D  +P       L+ K   
Sbjct: 117 GYHYRARYEFILFFEKGKRKL-------------------QDLGMPDV-----LQEKRVW 152

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           + +PT+KP  L+ +++  S+  GD+++DPFFGSG +   A  L R   G ++ Q   +  
Sbjct: 153 RGYPTEKPVPLIEKLISQSSSVGDLVIDPFFGSGATLIAAANLGRQSEGADIAQSAHEFV 212

Query: 262 TKRIASVQP 270
             RI  V+ 
Sbjct: 213 NNRIKPVEK 221


>gi|300764707|ref|ZP_07074698.1| hypothetical protein LMHG_11065 [Listeria monocytogenes FSL N1-017]
 gi|300514593|gb|EFK41649.1| hypothetical protein LMHG_11065 [Listeria monocytogenes FSL N1-017]
          Length = 416

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 91/252 (36%), Gaps = 39/252 (15%)

Query: 21  DKIIKGNSI-----SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
            +++ G+S       VL  +  K  +L   DPPYN+   G   +  +             
Sbjct: 169 HRLVCGDSTKQETYDVL--MDGKLANLTVTDPPYNVNYEGSAGKIKN-----------DN 215

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            + EA+  F         + +  + +++V  +               F++    +W+K +
Sbjct: 216 MANEAFYIFLYDAFSCMEKAMADDASIYVFHADTEGLNFRRAFVEAGFYLSGTCIWKKQS 275

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            +       +Q  HE +++         +            D                  
Sbjct: 276 LV--LGRSPYQWQHEPVLYGWKKKGKHQWYTGRKESTIWEFDKP---------------- 317

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
             K+G+  HPT KP  LL+  + +S+    I+LDPF GSG++    ++  R    IE+ +
Sbjct: 318 -KKNGD--HPTMKPILLLAYPITNSSMSNCIVLDPFGGSGSTLIACEQTNRICHTIELDE 374

Query: 256 DYIDIATKRIAS 267
            ++D+   R   
Sbjct: 375 KFVDVIVNRYIE 386


>gi|237753134|ref|ZP_04583614.1| DNA methylase N-4/N-6 [Helicobacter winghamensis ATCC BAA-430]
 gi|229375401|gb|EEO25492.1| DNA methylase N-4/N-6 [Helicobacter winghamensis ATCC BAA-430]
          Length = 275

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 70/263 (26%), Positives = 106/263 (40%), Gaps = 27/263 (10%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           + G+++  L+KL + SVD+    PPYN Q N + +   + + DA +D  D+    E Y  
Sbjct: 1   MCGDALKELQKLQSNSVDIGVTSPPYNKQENKKGWLVKNVIYDATSDKLDE----EYYQK 56

Query: 84  FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF-----WILNDIVWRKSNPMP 138
              A L    RV K  G+     ++   +  G ++  L +     W L   +        
Sbjct: 57  SQIAVLDEVYRVTKEGGSF--FYNHKIRWEKGRLIHPLEWIVKTQWNLRQEIIWDRGIAA 114

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           N RG RF    E + W            N    +  +    + S W I            
Sbjct: 115 NIRGWRFWQVEERIYWLQKPKGK-----NLIGEELQSRHALLSSIWRI----------RP 159

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPG-DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           +    HP   P AL  R + S       ++LDP+ GSGTSG  AK L   FIGI+  Q+Y
Sbjct: 160 ESNNAHPAPFPLALPLRCIFSILNEKSGVVLDPYCGSGTSGIAAKILNCEFIGIDNSQNY 219

Query: 258 IDIATKRIASVQPLGNIELTVLT 280
           ++ A  RIA+ +         L 
Sbjct: 220 LEFAKHRIANYRDYIQEAQNELQ 242


>gi|110005177|emb|CAK99504.1| putative n6 adenine specific dna methyltransferase protein
           [Spiroplasma citri]
          Length = 243

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 59/256 (23%), Positives = 109/256 (42%), Gaps = 33/256 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH---SLVDAVTDSWDKFSSF 78
           K+I G+++  ++ L   SVDLI  DPPY   L+ +     +   ++  ++    +     
Sbjct: 8   KLINGDALEFIKTLENDSVDLILTDPPYLYNLSKRENEQKNEKSNITKSINKYINAIYDN 67

Query: 79  EAYDAF-TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--ILNDIVWRKSN 135
             +++F    +L    R+ K    L     + N  +I   L  +     + + I+W K+N
Sbjct: 68  NLHNSFDINTYLDEFYRISKNKFILI----WMNRQQIIDYLDWVRKKDMLYDFILWNKTN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           PMP          +  +I++                           ++     S     
Sbjct: 124 PMPTNNHIYQDKEYCMIIYSKKH---------------------RIPNYKNDYESKKTIF 162

Query: 196 RNKDGEKL--HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
               G+KL  HPT+KP  + +R++   +K  D+ILD F GSGT+    ++L+R ++G E+
Sbjct: 163 NYSIGKKLTRHPTEKPLYIFNRLISKYSKENDLILDCFLGSGTTAYACEQLKRKWLGCEI 222

Query: 254 KQDYIDIATKRIASVQ 269
             +Y  I  KR+  +Q
Sbjct: 223 NNEYYKIIKKRLKDIQ 238


>gi|110005034|emb|CAK99365.1| putative n6 adenine specific dna methyltransferase protein
           [Spiroplasma citri]
          Length = 243

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 59/256 (23%), Positives = 109/256 (42%), Gaps = 33/256 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH---SLVDAVTDSWDKFSSF 78
           K+I G+++  ++ L   SVDLI  DPPY   L+ +     +   ++  ++    +     
Sbjct: 8   KLINGDALEFIKTLENDSVDLILTDPPYLYNLSKRENEQKNEKSNITKSINKYINAIYDN 67

Query: 79  EAYDAF-TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--ILNDIVWRKSN 135
             +++F    +L    R+ K    L     + N  +I   L  +     + + I+W K+N
Sbjct: 68  NLHNSFDINTYLDEFYRISKNKFMLI----WMNRQQIIDYLDWVRKKDMLYDFILWNKTN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           PMP          +  +I++                           ++     S     
Sbjct: 124 PMPTNNHIYQDKEYCMIIYSKKH---------------------RIPNYKNDYESKKTIF 162

Query: 196 RNKDGEKL--HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
               G+KL  HPT+KP  + +R++   +K  D+ILD F GSGT+    ++L+R ++G E+
Sbjct: 163 NYSIGKKLTRHPTEKPLYIFNRLISKYSKENDLILDCFLGSGTTAYACEQLKRKWLGCEI 222

Query: 254 KQDYIDIATKRIASVQ 269
             +Y  I  KR+  +Q
Sbjct: 223 NNEYYKIIKKRLKDIQ 238


>gi|297571107|ref|YP_003696881.1| DNA methylase N-4/N-6 domain protein [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931454|gb|ADH92262.1| DNA methylase N-4/N-6 domain protein [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 416

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 89/251 (35%), Gaps = 34/251 (13%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G++     V   +  K  +L+  DPPYN+           S +    D  D+  
Sbjct: 167 RHRLVCGDATSQTDVEALMDGKRANLVLTDPPYNVAFE------SGSGLSIKNDKMDR-- 218

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E +  F  +       V +   + +V  +           Q+  F++    +W K + 
Sbjct: 219 --EKFYNFLLSAFTNMAAVCEKGASAYVFHADTEGLNFRRAFQDAGFYLSGCCIWVKDSL 276

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +       +Q  HE +++         +  +       N     R               
Sbjct: 277 V--LGRSPYQWQHEPVLYGWVKTGKHRWYADRKQTTIWNFAKPRR--------------- 319

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                  HPT KP  LL+  L +ST+   I+LD F GSG++    +   R    +E+ + 
Sbjct: 320 ----NADHPTSKPLDLLAYPLQNSTQANAIVLDTFAGSGSTLMACETTDRICHAMELDEK 375

Query: 257 YIDIATKRIAS 267
           Y  +  +R A 
Sbjct: 376 YASVILRRYAE 386


>gi|90578026|ref|ZP_01233837.1| haemagglutinin associated protein [Vibrio angustum S14]
 gi|90441112|gb|EAS66292.1| haemagglutinin associated protein [Vibrio angustum S14]
          Length = 219

 Score =  142 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 98/245 (40%), Gaps = 29/245 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I + ++I  L  LP +S+DL+  DPPY      +       L  +   S   F  F   
Sbjct: 2   QIFQKDAIEWLTALPDQSIDLMITDPPYESLEKHRSVGTTTRLKQSKGSSNQWFDIFP-- 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           +    + L    RVLK N   ++      +F I  + + + F     IVW K   +    
Sbjct: 60  NERFESLLTQAYRVLKQNSHFYLFCDQETMFHIKPIAEQVGFKFWKPIVWDK---VAIGM 116

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G  ++  +E +++     +                         +   S  + L  K   
Sbjct: 117 GYHYRARYEFILFFEKGKRK------------------------LNNLSIPDVLECKRVY 152

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           + +PT+KP  LL  ++  S+  GD+I DPFFGSG++   A KL R   G ++        
Sbjct: 153 RGYPTEKPVPLLEILIEQSSVEGDVIADPFFGSGSTLVAADKLSRQAWGSDISDSAHQHL 212

Query: 262 TKRIA 266
            +R++
Sbjct: 213 KQRLS 217


>gi|39653711|ref|NP_945276.1| transferase [Streptococcus phage EJ-1]
 gi|38638879|emb|CAE82119.1| transferase [Streptococcus phage EJ-1]
          Length = 421

 Score =  142 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 49/263 (18%), Positives = 97/263 (36%), Gaps = 25/263 (9%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G+S     +   +    +DL   DPPYN+   G        + D++ D      
Sbjct: 159 RHRLMCGDSTSAEDMARLIDGAVIDLYVTDPPYNVAYQGGTDEAMTIMNDSMDDV----- 213

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
              ++  F R         LK  G  ++  +          ++   + +   I+W K+  
Sbjct: 214 ---SFRQFLRDAFAVANNHLKSGGAFYIWHADSEGLNFRAAVKETGWLLKQSIIWVKNAI 270

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP--------- 187
           +     + +Q  HE  ++      +  +  N        ED +   +             
Sbjct: 271 V--LGRQDYQWKHEPCLYGWKDGASHYFVDNRSLATVIEEDEENLKEMTKSELISYIKTM 328

Query: 188 ---ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
                +            +HPT KP  L++R +++S+K GD ILD F G G++  V ++ 
Sbjct: 329 QDTSPTTVFYEDKPVRNDIHPTMKPLKLIARCVLNSSKKGDKILDSFNGGGSTLMVCERS 388

Query: 245 RRSFIGIEMKQDYIDIATKRIAS 267
            R    +E+   Y++   KR   
Sbjct: 389 ERVCYAMELDPVYVERTIKRWEE 411


>gi|57505513|ref|ZP_00371440.1| adenine specific DNA methyltransferase (hpaim) [Campylobacter
           upsaliensis RM3195]
 gi|57016060|gb|EAL52847.1| adenine specific DNA methyltransferase (hpaim) [Campylobacter
           upsaliensis RM3195]
          Length = 272

 Score =  142 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 55/268 (20%), Positives = 106/268 (39%), Gaps = 31/268 (11%)

Query: 13  QNSIFEWKD-KIIKGNSIS--VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           +N  F +++  + + +S++  +L K    S DLI   PPYN+ +                
Sbjct: 13  ENGGFNYENINLYQNSSLNKNILSK---NSCDLIITSPPYNVGIEY-------------- 55

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI--------GSYHNIFRIGTMLQNL 121
           +S +  +S+E+Y  FT+ W+  C    K      +         G       + T+ + +
Sbjct: 56  NSNEDSNSYESYLEFTQKWIENCYFWAKDGARFCLNIPLDKNKGGQQSVGADLTTLAKQI 115

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
            +   + I+W + N         + +A    + A        Y   +        D+   
Sbjct: 116 GWKYHSTIIWNEGNISRRTAWGSWLSASAPYVIAPVELIVVLYKGAWKKKHKGESDI--S 173

Query: 182 SDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
            +  +   +G      +  +++ HP   P  L  R +   +  GD++ DPF GSGT+   
Sbjct: 174 KEEFMAWTNGLWSFNGESKKRIGHPAPFPRELPKRCIKLFSYVGDVVFDPFCGSGTTMIE 233

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +    R FIGIE+ + Y +++ KR    
Sbjct: 234 SYLNNRQFIGIELDRQYCELSKKRFLET 261


>gi|302876781|ref|YP_003845414.1| DNA methylase N-4/N-6 domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307687462|ref|ZP_07629908.1| DNA methylase N-4/N-6 domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302579638|gb|ADL53650.1| DNA methylase N-4/N-6 domain protein [Clostridium cellulovorans
           743B]
          Length = 418

 Score =  142 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 101/278 (36%), Gaps = 38/278 (13%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G++     V   +  K  +LI +DPPY +              D +T   D   
Sbjct: 168 RHRLMCGDATSEEDVATLMDGKKANLIVSDPPYGVSFQSS---------DGLTIQNDSIK 218

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E Y  F           L+  G  ++  +           Q+  F +    +W K++ 
Sbjct: 219 GEEFY-NFLLQAFKNMAAHLEKGGAAYIFHADTEGLNFRRAFQDAGFHLAGCCIWVKNSL 277

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +        Q  HE +++         +  +       N D   R               
Sbjct: 278 VLGRSDY--QWQHEPVLYGFLQNGKHPWYSDRSQTTIWNFDKPKR--------------- 320

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                K HPT KP  LL+  + +S++   I++D F GSG++    ++  R    +E+ + 
Sbjct: 321 ----NKNHPTSKPLDLLAYPIGNSSQANGIVVDTFGGSGSTLMACEQTNRICHTMELDEK 376

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLV 294
           Y  +  +R   V+  G+ +   +   R   ++ ++ LV
Sbjct: 377 YASVILRRY--VEDTGDADNVYVI--RDGEQIPYSALV 410


>gi|163932178|ref|YP_001642368.1| putative adenine methyltransferase [Lactobacillus johnsonii
           prophage Lj771]
 gi|163562132|gb|ABY26988.1| putative adenine methyltransferase [Lactobacillus johnsonii
           prophage Lj771]
          Length = 283

 Score =  142 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 53/252 (21%), Positives = 96/252 (38%), Gaps = 25/252 (9%)

Query: 20  KDKIIKGNSI--SVLEKLPAK-SVDLIFADPPYNLQLNGQ-LYRPDHSLVDAVTDSWDKF 75
           + +++ G+S     ++KL      DL+  DPPYN+  + +   R   S      D  +  
Sbjct: 42  RHRLMCGDSTKPEDVKKLMNGVQADLLITDPPYNVDYSSKDFGRTKMSKTRKNNDIANDK 101

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
              E +  F           +K   + ++  S     +     +     +   ++W K+N
Sbjct: 102 MENEQFMQFLVQAFSNASVNMKLGASFYIWFSDLATVQFNEAAKESGLNVKETLIWVKNN 161

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            +     + +Q+ HE  ++      +  +  +       N D   RSD            
Sbjct: 162 FV--LGRQDYQHKHEPCLYGWVDGGSHSWYSDRKQTTILNFDKPQRSD------------ 207

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                  LHPT KP  L    + +S+K GDI+LD F GSGT+    ++  R+   +E   
Sbjct: 208 -------LHPTMKPIPLFDYQIKNSSKSGDIVLDLFGGSGTTLMACEQDGRNAYLMEFDP 260

Query: 256 DYIDIATKRIAS 267
            Y+D+   R   
Sbjct: 261 RYVDVIIDRWEK 272


>gi|110667919|ref|YP_657730.1| site-specific DNA-methyltransferase [Haloquadratum walsbyi DSM
           16790]
 gi|109625666|emb|CAJ52098.1| site-specific DNA-methyltransferase [Haloquadratum walsbyi DSM
           16790]
          Length = 284

 Score =  142 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 57/265 (21%), Positives = 102/265 (38%), Gaps = 25/265 (9%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF-SSFEAY 81
           I +G+ +  L +L   ++ L F  PPY   +N + +      V   TD W++   S++ Y
Sbjct: 11  IHRGDCLDGLRELAEDAITLGFTSPPYFNAVNYEEHVEK---VHGNTDHWEREEMSYDDY 67

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNI--------FRIGTMLQNLNFWILNDIVWRK 133
             F         RV +P G   V  S  +         F +   ++++ +    DI+W K
Sbjct: 68  QDFLIKRFEEVFRVTRPGGHTIVNISPVHWEDERVALPFHLVGWMEDIGWTFKEDIIWEK 127

Query: 134 S------------NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
                        NP P +        +  +       + K   +     +   ++    
Sbjct: 128 PVAKDRRSGVLLQNPYPGYYYPSVVAEYVLVFQKEADDENKNNIYWNRTEEEKTKNEISL 187

Query: 182 SDWLIPICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
            D+         ++R    GE  HP   P  L  R++   +   D ++D F GSG +   
Sbjct: 188 DDYQGEKSKNVWKIRQVAPGENEHPAPFPRELAERVIQFYSYQDDTVMDIFAGSGQTLLA 247

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRI 265
           A+ L R FIG E + +Y++ A  R+
Sbjct: 248 AQDLDREFIGFETQHEYVEYAKNRV 272


>gi|330448524|ref|ZP_08312172.1| DNA methylase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492715|dbj|GAA06669.1| DNA methylase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 217

 Score =  142 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 99/246 (40%), Gaps = 33/246 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV--DAVTDSWDKFSSFE 79
           ++ + +++  L  LP +S+DL+  DPPY      +       L      ++ W      E
Sbjct: 2   QLFQQDAVEWLSSLPDQSIDLLITDPPYESLEKHRAVGTTTRLKQSKGSSNQWFNIFPNE 61

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            +D      L    RVLK N   ++      +F I  + + + F     IVW K   +  
Sbjct: 62  RFDTL----LTQAYRVLKQNSHFYLFCDQETMFHIKPIAEQVGFKFWKPIVWDK---VAI 114

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
             G  ++  +E +++     +                         +   S  + L  K 
Sbjct: 115 GMGYHYRARYEFILFFEKGKRK------------------------LNNLSIPDVLECKR 150

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
             + +PT+KP  LL  ++  S+  G+++ DPFFGSG++   A+KL R   G ++      
Sbjct: 151 VYRGYPTEKPVPLLEILIEQSSVEGEVVADPFFGSGSTLVAAQKLSRQAWGNDISDSAHQ 210

Query: 260 IATKRI 265
             T+RI
Sbjct: 211 HLTQRI 216


>gi|220920904|ref|YP_002496205.1| DNA methylase N-4/N-6 domain-containing protein [Methylobacterium
           nodulans ORS 2060]
 gi|219945510|gb|ACL55902.1| DNA methylase N-4/N-6 domain protein [Methylobacterium nodulans ORS
           2060]
          Length = 464

 Score =  142 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 100/247 (40%), Gaps = 13/247 (5%)

Query: 21  DKIIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +++ G+++++      L     DL+F DPPYN+ + G +     +       +  + + 
Sbjct: 188 HRLLCGDALALESYAALLQGDLADLVFTDPPYNVPIEGHVSGLGATKHRDFAMASGEMNE 247

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E + AF   +L   R   +     +V     +   + T ++ +   +    VW KSN  
Sbjct: 248 AE-FTAFLARFLDLARAHSRDGSIHYVCMDAAHALELLTAVRQVGLSLKTTCVWAKSNGG 306

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                 R Q     ++    +P           ++         + W     + S R   
Sbjct: 307 MGSL-YRQQCEFVHVLKNGEAPHVNN-------VELGRHGRNRTTLWQYAGVN-SFRRGR 357

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
            +   LHPT KP AL++  +   +K   ++LDPF GSGT+   A+K  R    +E+   Y
Sbjct: 358 MEELSLHPTVKPVALVADAIKDCSKRRGVVLDPFSGSGTTLVAAEKTGRVARVLELSPAY 417

Query: 258 IDIATKR 264
            D+A +R
Sbjct: 418 CDVAIRR 424


>gi|110005618|emb|CAK99936.1| hypothetical adenine specific dna methyltransferase protein
           [Spiroplasma citri]
          Length = 243

 Score =  142 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 110/254 (43%), Gaps = 29/254 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH---SLVDAVTDSWDKFSSF 78
           K+I G+++  ++ L   SVDLI  DPPY   L+ +     +   ++  ++    +     
Sbjct: 8   KLINGDALEFIKTLENDSVDLILTDPPYLYNLSKRENEQINEKSNITKSINKYINAIYDN 67

Query: 79  EAYDAF-TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--ILNDIVWRKSN 135
             +++F    +L    R+ K    L     + N  +I   L  +     + + I+W K+N
Sbjct: 68  NLHNSFDINTYLDEFYRISKNKFMLI----WMNRQQIIDYLDWVRKKDMLYDFILWNKTN 123

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           PMP          +  +I++    +   Y  +Y++ K        +              
Sbjct: 124 PMPTNNHIYQDKEYCMIIYSKKH-RIPNYKNDYESKKTIFNYSIGKKI------------ 170

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                   HPT+KP  + +R++   +K  D+ILD F GSGT+    ++L+R ++G E+  
Sbjct: 171 ------TRHPTEKPLYIFNRLISKYSKENDLILDCFMGSGTTAYACEQLKRKWLGCEINN 224

Query: 256 DYIDIATKRIASVQ 269
           +Y  I  KR+  +Q
Sbjct: 225 EYYKIIKKRLKDIQ 238


>gi|84684775|ref|ZP_01012675.1| prophage LambdaMc01, DNA methyltransferase [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667110|gb|EAQ13580.1| prophage LambdaMc01, DNA methyltransferase [Rhodobacterales
           bacterium HTCC2654]
          Length = 433

 Score =  142 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 99/251 (39%), Gaps = 13/251 (5%)

Query: 20  KDKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G+++    V + +  +   ++F+DPPYN+ ++G +             +  + S
Sbjct: 169 RHRLMCGDALDPVVVGDLMAGEVARMVFSDPPYNVPIDGHVGNSGKVQHREFAMASGEMS 228

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           S EA+  F    L             ++   + ++  +    + +   + N IVW K N 
Sbjct: 229 S-EAFTGFLTTALGNMADHAVEGSIHFLCMDWRHMGEMLAAGEAIYDELKNLIVWAKDNG 287

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
                G  +++ HE +            TF     +         + W     + + R  
Sbjct: 288 G---MGTFYRSRHELIFAFKNGTAPHVNTF-----ELGQHGRYRTNVWQYRGVN-TLRAG 338

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
             +   LHPT KP  +++  +   +  G+I+LD F GSG++   A+K  R     E+   
Sbjct: 339 RMEELALHPTVKPVQMIADAIRDVSGRGEIVLDLFGGSGSTLIAAQKTGRRGYLCELDPI 398

Query: 257 YIDIATKRIAS 267
           Y D    R  +
Sbjct: 399 YCDRIVARWEA 409


>gi|163758317|ref|ZP_02165405.1| DNA methylase N-4/N-6 [Hoeflea phototrophica DFL-43]
 gi|162284606|gb|EDQ34889.1| DNA methylase N-4/N-6 [Hoeflea phototrophica DFL-43]
          Length = 456

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 100/254 (39%), Gaps = 19/254 (7%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQ---LYRPDHSLVDAVTDSWDK 74
            +++ G++     +      K   L+F DPPYN+ ++G    L R  H      +   D+
Sbjct: 157 HRLLCGDARSHEDIARLCEGKPAALLFTDPPYNVAIDGHVSGLGRIKHREFALASGEMDE 216

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            +    + AF +  L A    LK     +V   + ++  +      +   + N  VW K+
Sbjct: 217 TT----FAAFLKESLGAAASQLKDGAIAYVCMDWRHMRELLEAGHAVFDELKNLCVWNKT 272

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N      G  +++ HE +        A    F        +      + W  P  S S  
Sbjct: 273 NGG---MGSFYRSKHELVFVFKKGTAAHINNF-----GLGDTGRYRTNVWDYPGIS-SLG 323

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
               +   +HPT K  AL++  +   +K GD +LD F GSG++   A +  R+   IE+ 
Sbjct: 324 ANRDEELAMHPTVKSVALIADAIRDCSKRGDTVLDVFGGSGSTLIAADQCGRAARLIEID 383

Query: 255 QDYIDIATKRIASV 268
             Y D   +R   +
Sbjct: 384 PLYCDTIIRRFERI 397


>gi|119944476|ref|YP_942156.1| DNA methylase N-4/N-6 domain-containing protein [Psychromonas
           ingrahamii 37]
 gi|119863080|gb|ABM02557.1| DNA methylase N-4/N-6 domain protein [Psychromonas ingrahamii 37]
          Length = 220

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 101/248 (40%), Gaps = 33/248 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV--DAVTDSWDKFSSFE 79
           ++ K ++++ L  L  +SVDL+  DPPY      +       L    A ++ W    S +
Sbjct: 2   QVYKDDAVNWLSTLADESVDLLITDPPYESLEKHRKIGTTTRLKVSKASSNEWFGIFSND 61

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            +++     L    RVLK N   ++      +F I  + + + F     I+W K   +  
Sbjct: 62  RFESL----LTEIYRVLKKNSHFYLFCDQETMFVIKPIAEKVGFKFWKPIIWDK---VCI 114

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
             G  ++  HE +++     K                         +   +  + L  K 
Sbjct: 115 GMGYHYRARHEYILFFEKGKKK------------------------LNNLATPDILEYKR 150

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
             + +PT+KP  L+  ++  S+  G++++DPFFGSG +   A+ L R + G ++ +    
Sbjct: 151 VFRGYPTEKPVPLMETLIAQSSVKGELVIDPFFGSGATLVAAQNLERRYSGCDLSESAHQ 210

Query: 260 IATKRIAS 267
               RI  
Sbjct: 211 HYQNRILE 218


>gi|322369912|ref|ZP_08044474.1| modification methylase [Haladaptatus paucihalophilus DX253]
 gi|320550248|gb|EFW91900.1| modification methylase [Haladaptatus paucihalophilus DX253]
          Length = 342

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 61/272 (22%), Positives = 112/272 (41%), Gaps = 27/272 (9%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDKF 75
            E + +I  G++      LP  S+DL+   PPY  +++   L+   +  ++    + D  
Sbjct: 1   METEHEIHVGDARDT--SLPDDSIDLVVTSPPYPMIEMWDDLFADANPEIETALSAGDGD 58

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLW------------VIGSYHNIFRIGTMLQNLNF 123
           ++FE       A      RVLKP G                  S+ N   +   L+    
Sbjct: 59  TAFELMHDELDAVWAELVRVLKPGGIAVINVGDATRKVDGTFQSFPNHAHVLRDLRERGL 118

Query: 124 WILNDIVWR-KSNPMPNFRGRRFQN-------AHETLIWASPSPKAKGYTFNYDALKAAN 175
             L DI+WR  SN +  F G             HE L+    +   + +    D    ++
Sbjct: 119 KSLPDILWRKPSNRLTKFMGSGMLPPNAYAALEHEYLL-VFRNGDTREFEPGVDHRYESS 177

Query: 176 EDVQMRSDWLIPICS---GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
              + R++W   + +   G E+L +    +      P  L  R++   +  GD +LDPF+
Sbjct: 178 YFWEERNEWFSDLWTDVRGEEQLLDHGDLRERSAAFPFELPYRLISMFSVYGDTVLDPFW 237

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           G+GT+   A    R+ +G E++ D++++  +R
Sbjct: 238 GTGTTSLAAMVAGRNSVGYELEPDFVELFAER 269


>gi|167760205|ref|ZP_02432332.1| hypothetical protein CLOSCI_02578 [Clostridium scindens ATCC 35704]
 gi|167662088|gb|EDS06218.1| hypothetical protein CLOSCI_02578 [Clostridium scindens ATCC 35704]
          Length = 250

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 53/259 (20%), Positives = 93/259 (35%), Gaps = 29/259 (11%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
            + + ++  +P   V LI  DPPY +       R  H ++D      D+   +E +    
Sbjct: 1   MDCMELMAHIPDNFVSLILTDPPYGIAYQNHFARQPHEILDG-----DQGIDYERF---- 51

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN--PMPNFRGR 143
            AW     R+L+ N   +    +         L+   F + N +V  K     + + +G 
Sbjct: 52  -AW--ESYRILRDNSHAYFFTRFDCYSFHYDCLRKAGFTVKNCLVVEKGTLGGIGDLKGS 108

Query: 144 RFQNAHETLIWASPSPKAKGYTF------NYDALKAANEDVQMRSDWLIPICSGSERL-- 195
              N+ E +I+     +    T                 +   +     P C   E    
Sbjct: 109 YANNS-EWIIFCQKGRRLFQQTQLLENRKKEGTQFHKGREPSKKYKTRFPACWFGEEYPK 167

Query: 196 ------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
                   K     HPT K    LS ++  S+   +++ D F G+G++   A    R ++
Sbjct: 168 ATYNATWQKKHGIYHPTVKNVEFLSWLIQISSTRKELVFDGFMGTGSTALAALANGRDYL 227

Query: 250 GIEMKQDYIDIATKRIASV 268
           G E+ + Y  I  KRI  V
Sbjct: 228 GAEINEAYFKITQKRIKEV 246


>gi|297617762|ref|YP_003702921.1| DNA methylase N-4/N-6 domain protein [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297145599|gb|ADI02356.1| DNA methylase N-4/N-6 domain protein [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 264

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/262 (22%), Positives = 106/262 (40%), Gaps = 33/262 (12%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           + DK+   +++ +L +LP  SVD++F DP YN+ +  +                    SF
Sbjct: 7   YLDKVFLMDTMDLLRELPDSSVDMVFGDPDYNVGVKYRGKSYKR--------------SF 52

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           + Y  +         RVLK  G L+ I        +     +   + ++D  W  ++ + 
Sbjct: 53  DEYIEWYVELARESLRVLKETGNLFFINYPKQNAYLRVKYLDEACYEVHDYAWVYNSNVG 112

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR------------SDWL- 185
           +   +RF  AH +++ A  +     Y  N         D ++R             DW  
Sbjct: 113 HS-PKRFTTAHRSILHARKTKNNDFYKENVAQPYKNPTDRRIRSNLANGSRGRMPYDWFY 171

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
             +     R      +  H  Q P+ L   ++ S T+PGD++L  F GSG+   V K+L 
Sbjct: 172 FDLVKNVSR-----EKTYHACQIPQKLSELLIKSCTRPGDVVLILFGGSGSELEVCKRLD 226

Query: 246 RSFIGIEMKQDYIDIATKRIAS 267
           R +I  E+  DY  +   R+ +
Sbjct: 227 RRYISAEVDPDYHRMILHRLEN 248


>gi|237737303|ref|ZP_04567784.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium
           mortiferum ATCC 9817]
 gi|229421165|gb|EEO36212.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium
           mortiferum ATCC 9817]
          Length = 253

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 64/276 (23%), Positives = 112/276 (40%), Gaps = 49/276 (17%)

Query: 15  SIFEWKD-KIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
           +I E K+ ++  GN + +++KL      VDLI  DPPY                    + 
Sbjct: 3   AILEIKNIQLYNGNCLEIMDKLIEAGIKVDLIITDPPY----------------QKTKNK 46

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           WD    F+  D + R      +++ K N  + + G    IF    +L N   +  + ++W
Sbjct: 47  WDYVIPFD--DMWNR-----LKKLRKDNTPIILFG--QGIFSAKLILSNEEEYRYS-LIW 96

Query: 132 RKSNPMPNFRGRRFQ-NAHETLI-WASPSPKAKGYTF-----------------NYDALK 172
            K +P       +   ++HE ++ +    P      F                 N     
Sbjct: 97  NKEHPSGFLNANKMPLSSHEDILVFYKKLPIYNPQKFKGKQNNSTGNTIAPKINNNYNNF 156

Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
              ++ +   D   P    + +  +     +HPTQKP  LL  ++ + +    ++LD   
Sbjct: 157 IQEDNSKKYGDMKFPRSILNFKKPH-PSVMVHPTQKPVELLEYLIKTYSNEKSLVLDFTM 215

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           GSG++G   K L R+FIGIE+ +DY  +A  R+  V
Sbjct: 216 GSGSTGIACKNLNRNFIGIEIDKDYFKLAINRLEVV 251


>gi|229520810|ref|ZP_04410232.1| hemagglutinin associated protein [Vibrio cholerae TM 11079-80]
 gi|229342043|gb|EEO07039.1| hemagglutinin associated protein [Vibrio cholerae TM 11079-80]
          Length = 236

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 100/243 (41%), Gaps = 29/243 (11%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           ++I+ L  + + SVDL+  DPPY      +       L ++ + S   F  F   +    
Sbjct: 20  DAITWLRTIESNSVDLVITDPPYESLEKHRKIGTTTRLKNSKSSSNQWFEIFP--NERFE 77

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
             +    R++K N   ++      +F I  + +++ F     IVW K   +    G  ++
Sbjct: 78  ELVSEIYRIMKKNSHFYLFCDQETMFVIKPIAESMGFKFWKPIVWDK---VSIGMGYHYR 134

Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
             +E +++     +                         +   S  + L  K   K +PT
Sbjct: 135 ARYEFILFFEKGKRK------------------------LNNLSIPDILVEKRVWKGYPT 170

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           +KP  L   ++  S+   D+++DPF GSG  G  ++ L R+F G ++  + + +   RI 
Sbjct: 171 EKPVNLAKTLIEQSSNEQDVVIDPFCGSGFVGQASELLNRNFRGNDLNIEAVKLTKTRIN 230

Query: 267 SVQ 269
           S++
Sbjct: 231 SIR 233


>gi|307947054|ref|ZP_07662389.1| DNA methylase N-4/N-6 domain-containing protein [Roseibium sp.
           TrichSKD4]
 gi|307770718|gb|EFO29944.1| DNA methylase N-4/N-6 domain-containing protein [Roseibium sp.
           TrichSKD4]
          Length = 470

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 109/291 (37%), Gaps = 34/291 (11%)

Query: 21  DKIIKGNSI--SVLEKL-------PAKSVD-------LIFADPPYNLQLNGQLYRPDHSL 64
            +++ G++     +  L        A   D       L+F DPPYN+ +NG +       
Sbjct: 185 HRLLCGDARSGEAVRLLCLGDEGEGAAQADRGLHMPSLLFTDPPYNVPVNGHVSGLGKKT 244

Query: 65  VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
                +   +  S E +  F    L A    L      +V   + ++  +    +     
Sbjct: 245 HREFVEGAGEM-SREGFTGFLTETLSAAASCLCNGAIAFVCMDWRHMREVLDAGEAAFDE 303

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
           + N  VW K+N      G  +++ HE +        A    F         E     + W
Sbjct: 304 LKNLCVWNKTNAG---MGSFYRSKHELVFVFKKGRGAHLNNF-----GLGEEGRYRTNVW 355

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
                +     R++D   +HPT KP A++   ++  +K GD ILD F GSG++   A + 
Sbjct: 356 DYAGANSFGTSRDED-LAMHPTVKPIAMVKDAILDCSKRGDAILDVFGGSGSTLIAADQA 414

Query: 245 RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            R    +E+   Y D+  +R   +   G   L   TGK      +FN L E
Sbjct: 415 GRHARLMELDPLYCDVIVRRFQKIT--GKTALHAETGK------SFNALEE 457


>gi|254441749|ref|ZP_05055242.1| ParB-like nuclease domain family [Octadecabacter antarcticus 307]
 gi|198251827|gb|EDY76142.1| ParB-like nuclease domain family [Octadecabacter antarcticus 307]
          Length = 438

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 54/281 (19%), Positives = 109/281 (38%), Gaps = 16/281 (5%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K +I  G++         +      ++F DPPYN+ + G +     +      ++  + +
Sbjct: 170 KHRIFCGDARIADDFAALVADSKAAMVFTDPPYNVPIAGHVSGKGKACHREFHEASGEMT 229

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             + +  F    L    +  +     ++   + ++  +    Q      LN  VW K+N 
Sbjct: 230 RSD-FTTFLDEVLTNTSQRCRDGAISFICMDWRHMGELLEAGQRAFDAYLNLCVWAKTNG 288

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
                G  +++ HE +         KG   + + ++         + W     + + R  
Sbjct: 289 G---MGSLYRSQHELVF-----VFRKGKAQHRNNVQLGRFGRNRTNVWTYAGVN-TFREG 339

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
             +    HPT KP A++   ++  TK G+++LDPF G G +   A++  R   G+++   
Sbjct: 340 RMEELSAHPTAKPVAMVKDAILDVTKRGEVVLDPFLGGGATLMAAEQSGRVAYGMDIDAA 399

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERG 297
           YID+A +R          E    +  RT   +     +E G
Sbjct: 400 YIDVALRRWRKETGQ---EPLRASDDRTFVSIEAEQDLEAG 437


>gi|256026877|ref|ZP_05440711.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
           D11]
 gi|289764870|ref|ZP_06524248.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
           D11]
 gi|289716425|gb|EFD80437.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
           D11]
          Length = 321

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 68/316 (21%), Positives = 119/316 (37%), Gaps = 84/316 (26%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G+S+ +L+ L  +S+D I   PPY    +  +        +            E Y
Sbjct: 2   KIINGDSLKILKTLDTESIDCIITSPPYWQLRDYNISGQIGLEEN-----------IEEY 50

Query: 82  DAFTRAWLLACRRVLKPNGTLW-VIGSYHNI----------------------------- 111
                  +    RVLK +GT +  IG  ++                              
Sbjct: 51  IEKLMLIMDELYRVLKKSGTFFLNIGDTYSNVNSKFSKRSNKKRGKENIFKVIPRKTNIQ 110

Query: 112 --------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
                    R+   + +  + + N+I+W K N +P     RF N  E + + + +   + 
Sbjct: 111 RKSKMMIPERLCIKMIDQGWILRNEIIWHKPNVLPESLNDRFTNDFEKIFFFTKN---QK 167

Query: 164 YTFNYDALKAANEDVQMRSDWLIP------------------ICSGSERLRNKDG----- 200
           Y F       + + +    D ++P                  I    + + N++G     
Sbjct: 168 YYFKKQYEPYSEKTLNGFKDGVMPTGKKKMLEAGESKTAMKRIDKPWKTIYNENGRNMRT 227

Query: 201 ---------EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
                    ++ H    PE L+ R L++      I+LDPF GSGT+  VAK L  + +G+
Sbjct: 228 VWSIATKGIKEGHYASFPEELVKRCLLAGCPIDGIVLDPFLGSGTTLKVAKSLNLNGVGV 287

Query: 252 EMKQDYIDIATKRIAS 267
           E+K++YI++A  RI  
Sbjct: 288 ELKKEYIEMAVSRIGE 303


>gi|283784041|ref|YP_003363906.1| prophage DNA adenine methylase [Citrobacter rodentium ICC168]
 gi|282947495|emb|CBG87043.1| putative prophage DNA adenine methylase [Citrobacter rodentium
           ICC168]
          Length = 246

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 58/256 (22%), Positives = 90/256 (35%), Gaps = 33/256 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT--------DSWD 73
            +  G+ + VL  L ++  D +  DPPY+   +G  ++ D S+  +          +   
Sbjct: 10  TLYCGDVLDVLPAL-SERFDAVITDPPYS---SGGTHKSDRSMAPSDKYVGHTQYAEFTG 65

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                 ++  +   W+      L P G   V   +  +  +    Q         +VW K
Sbjct: 66  DNRDQRSWAFWCSMWISHALHRLNPGGYFMVFSDWRQLPALTDAFQAGGVLWRGLVVWDK 125

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
           +          F++  E ++W S     K                        P   G  
Sbjct: 126 TQASRAPHTGYFRHQAEYVVWGSNGKLDK-----------------CPHGGPFP---GVI 165

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
             R    EKLH T KP  L++ ++     P   +LDPF GSGT+          F GIEM
Sbjct: 166 TQRVVPSEKLHMTAKPVQLMAELVK-PLAPDAHVLDPFMGSGTTAIPVLARGGRFTGIEM 224

Query: 254 KQDYIDIATKRIASVQ 269
              Y DIA  RI   Q
Sbjct: 225 TNQYFDIACARIEKAQ 240


>gi|260878075|ref|ZP_05890430.1| DNA (cytosine-5-)-methyltransferase [Vibrio parahaemolyticus
           AN-5034]
 gi|113200498|gb|ABI32388.1| N6-methyltransferase [Vibrio parahaemolyticus]
 gi|308089843|gb|EFO39538.1| DNA (cytosine-5-)-methyltransferase [Vibrio parahaemolyticus
           AN-5034]
          Length = 233

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 58/245 (23%), Positives = 106/245 (43%), Gaps = 33/245 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV--DAVTDSWDKFSSFEA 80
           + + ++++ L  L A SVDL+  DPPY      +       L    A ++ W      + 
Sbjct: 16  LFQDDAVTWLSTLDAASVDLLITDPPYESLEKHRKIGTTTRLKVSKASSNQWFDIFPNDR 75

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           ++A     L    RVLK +   ++      +F I  + + + F     IVW K   +   
Sbjct: 76  FEAL----LSEVYRVLKNHSHFYLFCDQETMFVIKPIAEKIGFKFWKPIVWDK---VSIG 128

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G  ++  HE +++     +                      D  IP     + L +K  
Sbjct: 129 MGYHYRARHEYILFFEKGKRKLN-------------------DLSIP-----DILTHKRV 164

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            + +PT+KP +LL  ++  S++ G++++DPFFGSG++   AK L R F G ++ Q   + 
Sbjct: 165 YRGYPTEKPVSLLEVLVAQSSRDGELVVDPFFGSGSTLVAAKNLNRRFKGNDISQSAHEH 224

Query: 261 ATKRI 265
             +R+
Sbjct: 225 IHQRM 229


>gi|328541919|ref|YP_004302028.1| DNA methylase N-4/N-6 domain protein [polymorphum gilvum
           SL003B-26A1]
 gi|326411670|gb|ADZ68733.1| DNA methylase N-4/N-6 domain protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 252

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 65/269 (24%), Positives = 97/269 (36%), Gaps = 46/269 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++ G+   ++        D+I ADPPY                           +  A+
Sbjct: 7   TVLAGDCRDLMPA--HGPFDMILADPPYG-------------------------DTSLAW 39

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D     WL   R  LKP G+LWV GS            +    I  +IVW K N    F 
Sbjct: 40  DRRVEGWLPLARAALKPTGSLWVFGSLRCFMVTAIRFADAGLRIAQEIVWEKQNGSG-FH 98

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP-------------- 187
             RF+  HE  +   P+       +N            +R     P              
Sbjct: 99  ADRFKRVHELAVQFYPAETPWRDVYNDVQTTPDALARTVRRKKRPPHTGRIDAGHYVSQD 158

Query: 188 ----ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
               +      +RN  G  +HPT+KP ALL  ++ +S   G ++ D F GSG +G   + 
Sbjct: 159 GGPRLMRSVIYVRNAHGRAIHPTEKPSALLEILIRTSCPEGGLVGDWFAGSGAAGEACRL 218

Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLG 272
             R ++G E+     + A  RIA+V P  
Sbjct: 219 SGRRYLGCEIDAAMAERANARIAAVLPFD 247


>gi|289579072|ref|YP_003477699.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter italicus
           Ab9]
 gi|289528785|gb|ADD03137.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter italicus
           Ab9]
          Length = 629

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 68/323 (21%), Positives = 126/323 (39%), Gaps = 54/323 (16%)

Query: 17  FEWKDKIIKGNSISVLEKL---PAKS--------VDLIFADPPYNLQLNGQLY------- 58
            +W +++I G+++ V++ L     +S        +DLI+ DPP++ + + +         
Sbjct: 62  QDWYNRLIYGDNLLVMQALLAGDEESGLPSLRGKIDLIYIDPPFDSKADYRTKITLPGGD 121

Query: 59  ---RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
              +P      A +D+W + +   +Y       L+  + +L   G + V   +H    + 
Sbjct: 122 IEQKPSVIEQFAYSDTWKEGTV--SYLKMLYPRLVLMKELLSDRGVICVHVDWHVGHYVK 179

Query: 116 TMLQNL--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA--------KGYT 165
            +L  +      +N+IVW   N   N   +    AH+ ++  S +           +G T
Sbjct: 180 ILLDEIFGKDKFVNEIVWYYYNKYSN-AKKCLPRAHDNILVYSKNNDHIYNEIRIDRGET 238

Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP-------------TQKPEAL 212
                    N  +Q   D    +       +  D   + P             TQK   L
Sbjct: 239 VKQLVRVNVNGVLQNARDENGNLLYREVNDKKADDVFIIPQLQPASSEWMNYKTQKHHDL 298

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS----- 267
           L RI+   +    I+ D F GSGT+GAVA++L R +I  ++ +    I  KR+       
Sbjct: 299 LERIIKIFSNEDSIVADFFAGSGTTGAVAERLGRRWIMCDIGKPACMIMRKRLIDQNAKP 358

Query: 268 --VQPLGNIELTVLTGKRTEPRV 288
              Q +G+ +  V    +   RV
Sbjct: 359 FLYQSVGDYQKEVFASSKMFKRV 381


>gi|297519344|ref|ZP_06937730.1| putative methyltransferase [Escherichia coli OP50]
          Length = 234

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 102/222 (45%), Gaps = 19/222 (8%)

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           +  +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +     
Sbjct: 1   FIDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ- 58

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------------VQMRSDWL 185
             + + + +E ++       AK YTFN DA+    +                        
Sbjct: 59  AKKHYGSMYEPILMMVKD--AKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVP 116

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
             +          D  + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA    
Sbjct: 117 GNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASG 176

Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
           R FIGIE+  +YI +  +R+         EL  +  ++T  R
Sbjct: 177 RKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNR 218


>gi|15020663|emb|CAC44538.1| methyltransferase [Lactococcus lactis subsp. cremoris]
          Length = 282

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 123/290 (42%), Gaps = 49/290 (16%)

Query: 5   NSLAINENQNSIFEWKDK---IIKGNSISVLEKLPAKS-VDLIFADPPYNLQLNGQLYRP 60
           N +AI E       +KD+   +   +S+  +E L  K  V+L    PPYN++        
Sbjct: 6   NKIAIIEKVLGKPYYKDERTILYNIDSLKGMELLSHKKLVNLTVTSPPYNIRK------- 58

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM--- 117
                      ++K  S E Y +++  W+       + NG+ W+   Y  I   G     
Sbjct: 59  ----------EYEKVMSVEDYISWSENWINLVYENTEENGSFWLNVGYMPIKDKGKAIPI 108

Query: 118 ----LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
                    F+++ +++W  S  +   +    +N  E ++W   +     YTFN D ++ 
Sbjct: 109 PYLLWDKTKFFMIQELIWNYSAGVAAKKSLSPRN--EKILWYVKNQ--NKYTFNLDDIRD 164

Query: 174 ANEDVQM----------------RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
            N                        W IP  +  +    K+    HP Q P  L  RI+
Sbjct: 165 PNVKYPNQKKNGKIRVNPLGKNPSDVWQIPKVTSGKNRSAKE-RVPHPAQTPIELFKRII 223

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           ++S+K  D++LDPF GSGT+  ++K L R  +G E+ +DY+DIA  RI +
Sbjct: 224 LASSKKNDLVLDPFIGSGTTAVISKSLDRYCLGFELNKDYLDIAIDRIKN 273


>gi|207109001|ref|ZP_03243163.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 175

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 64/181 (35%), Positives = 90/181 (49%), Gaps = 13/181 (7%)

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
              W+     ++ PNG + +  SY  I  I   L+   F + + I W K+NPMP    RR
Sbjct: 5   LLEWIKHYAPLVNPNGCMIIFCSYRFISYIADFLEENGFVVKDFIQWVKTNPMPRNIHRR 64

Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
           +    E  +WA        + FN    K  NE          P+ SG E+++       H
Sbjct: 65  YVQDTEFALWAVKKKA--KWVFN----KPKNEKYLRPLILKSPVVSGLEKVK-------H 111

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PTQK  AL+ +I+   T P DI+LDPF GSGT+G   K L R+FIGIE +++Y   A KR
Sbjct: 112 PTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKNLERNFIGIESEKEYFQTAKKR 171

Query: 265 I 265
           +
Sbjct: 172 L 172


>gi|313896452|ref|ZP_07830003.1| DNA (cytosine-5-)-methyltransferase [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312974876|gb|EFR40340.1| DNA (cytosine-5-)-methyltransferase [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 316

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 56/277 (20%), Positives = 111/277 (40%), Gaps = 34/277 (12%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K ++I G+S    +    L  + V+L+  DPPY +QL     +  +          D  +
Sbjct: 64  KHRVICGDSTLPETYERLLGEEKVNLVCTDPPYMIQLESTSGKIKN----------DDLN 113

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             +AY  F ++   A    +  + +++V  +           ++  F +   +VW+K   
Sbjct: 114 DKDAY-EFLKSAFTAFHSAMATDASIYVFYATAKARIFHDAYEDAGFKVGAGLVWKKDRL 172

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +      ++   HE +IW         +  +         D                +  
Sbjct: 173 VLTRTDWKYI--HEPIIWGWRKDGRHRWYGDQKQTTVFAFDRI--------------KDS 216

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
            KDG   HP+ KP  L++ ++   T+   I+LD F GS ++     +L R   G+E++  
Sbjct: 217 KKDGC-GHPSSKPVPLIAYLIKQCTQTNGIVLDGFLGSASTLIACDQLGRICYGVELEPK 275

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
           ++D+A +R    +  GN E   L  +R   R+++  +
Sbjct: 276 FVDVAVERYIQSKD-GNAEDVFL--ERDGKRISYKDV 309


>gi|42520154|ref|NP_966069.1| prophage LambdaW1, DNA methylase [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42409891|gb|AAS14003.1| prophage LambdaW1, DNA methylase [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|116486887|emb|CAH64687.1| DNA methylase [Wolbachia endosymbiont of Drosophila melanogaster]
 gi|116486889|emb|CAH64688.1| DNA methylase [Wolbachia endosymbiont of Drosophila melanogaster]
          Length = 409

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/248 (22%), Positives = 97/248 (39%), Gaps = 36/248 (14%)

Query: 21  DKIIKGNS--ISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +I  G+S  +   +  L  K  D+   DPPYN+       R D  +++           
Sbjct: 168 HRIYCGDSCLVESFKAVLDDKMADITVCDPPYNVAYGDSQEREDKKILNDDQG------- 220

Query: 78  FEAYDAFTRAWLLACRRVLKPN-GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            E Y+ F       C  VL    G +++  S   +  +  + +         I+W K++ 
Sbjct: 221 -EKYELFLYDI---CSHVLAYTKGAIYICASSSELATLQKVFEEAGGRWSTFIIWAKNHF 276

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
                    Q  +ET+++   +   + +                   W     +      
Sbjct: 277 TLGRSDY--QRQYETILYGWKNGNKREWH----------GGRNQSDLWFYDKPT------ 318

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                 LHPT KP  L+ R +V+S++PGDI+LDPF GSG++    ++  R    IE+   
Sbjct: 319 ---YNSLHPTMKPVELMERAIVNSSRPGDIVLDPFSGSGSTLIACERTGRICRTIELDPT 375

Query: 257 YIDIATKR 264
           ++D+  KR
Sbjct: 376 FVDVTIKR 383


>gi|299067591|emb|CBJ38795.1| putative dna modification methylase protein [Ralstonia solanacearum
           CMR15]
          Length = 411

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 92/250 (36%), Gaps = 30/250 (12%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +++ G++         L  + VD++F DPPYN+         +     A+ +       
Sbjct: 171 HRLLCGDATVAEHYDRLLQGEPVDMVFTDPPYNVNYANTAKDRERGTSRAILNDNLGGGF 230

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            +   A     +  CR      G ++V  S   +  +    +         I+W K    
Sbjct: 231 HDFLLAALTPLVANCR------GAIYVAMSSSELDVLQAAFREAGGHWSTFIIWAKDRFT 284

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                   Q  +E +++       + +  + D           R+D              
Sbjct: 285 LGRADY--QRQYEPILYGWAEGAQRHWCGDRDQGDVWQIKKPARND-------------- 328

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
                LHPT KP  L+ R + +S++PGD++LD F GSGT+   A+K  R    IE+   Y
Sbjct: 329 -----LHPTMKPVELVERAIRNSSRPGDVVLDAFGGSGTTLIAAEKAARVARLIELDPRY 383

Query: 258 IDIATKRIAS 267
            D+  +R   
Sbjct: 384 ADVIVRRWEE 393


>gi|116486891|emb|CAH64689.1| DNA methylase [Wolbachia endosymbiont of Drosophila simulans]
          Length = 409

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/248 (22%), Positives = 97/248 (39%), Gaps = 36/248 (14%)

Query: 21  DKIIKGNS--ISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +I  G+S  +   +  L  K  D+   DPPYN+       R D  +++           
Sbjct: 168 HRIYCGDSCLVESFKAVLDDKMADITVCDPPYNVAYGDSQEREDKKILNDDQG------- 220

Query: 78  FEAYDAFTRAWLLACRRVLKPN-GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            E Y+ F       C  VL    G +++  S   +  +  + +         I+W K++ 
Sbjct: 221 -EKYELFLYDI---CSHVLAYTKGAIYICASSSELATLQKVFEEAGGRWSTFIIWAKNHF 276

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
                    Q  +ET+++   +   + +                   W     +      
Sbjct: 277 TLGRSDY--QRQYETILYGWKNGNKREWH----------GGRNQSDLWFYDKPT------ 318

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                 LHPT KP  L+ R +V+S++PGDI+LDPF GSG++    ++  R    IE+   
Sbjct: 319 ---YNSLHPTMKPVELMERAIVNSSRPGDIVLDPFSGSGSTLIACERTGRICRTIELDPT 375

Query: 257 YIDIATKR 264
           ++D+  KR
Sbjct: 376 FVDVTIKR 383


>gi|5730144|emb|CAB52546.1| methyltransferase [Bacillus sp.]
          Length = 388

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/277 (22%), Positives = 107/277 (38%), Gaps = 32/277 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++   + I  +  +   ++DLIFADPP+NL    +    D               S   Y
Sbjct: 110 RLFNADCIQTMRNMNDNTIDLIFADPPFNLDKKYESGMNDK-------------ISKTEY 156

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +T  W+  C R+LKP G L++            +L N N  + + I       +P   
Sbjct: 157 LNWTEEWVTECVRILKPGGALFIWNLPQWNTYTAEIL-NRNLNLRHWIAADVKYSLPI-- 213

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW-------------LIPI 188
             +   AH  L++     K   +      L+          D+             L  I
Sbjct: 214 ANKLYPAHYALLYYVKGDKPNTFNREGLPLEICRHCAGDIKDYGGYKNKLNIEGMSLTDI 273

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
                 +R+K  +     + P  LL RI+   +  GD+I DPF GSGT+  V++ L R +
Sbjct: 274 WHDISPVRHKKYKNRDSNELPLNLLERIISMCSIEGDLIFDPFGGSGTTYIVSEILNRHW 333

Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           IG E+    I    +R   ++    +++  +  K+ +
Sbjct: 334 IGTEIGP--IIGIEERFNQIE-FAKLKINDIQSKKNQ 367


>gi|251779709|ref|ZP_04822629.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243084024|gb|EES49914.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 260

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 60/265 (22%), Positives = 101/265 (38%), Gaps = 45/265 (16%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I  G+ + V+  +  KS+D+I  D PY                      WD   + E 
Sbjct: 5   NNIYLGDCLEVMADIKDKSIDMILCDLPYGTTR----------------CKWDSVINLE- 47

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                + W   C RV+K NG + +            +  +    +  + +W K+    + 
Sbjct: 48  -----KLWEHYC-RVIKDNGAIVLFA---QTPFDKVLGSSNLEMLRYEWIWEKTQATGHL 98

Query: 141 RGRRF-QNAHETLIWASPS----------PKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
             ++    AHE ++    +            A   T+        N ++       I   
Sbjct: 99  NAKKMPMKAHENILVFYKNLPVYNPQKTVGHAPVNTYTKYIATQNNSELYGELSKEISGG 158

Query: 190 SGSERLR--------NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
             +ER          +K  E LHPTQKP  LL  ++ + T  G+ +LD   GSG++   A
Sbjct: 159 GNTERYPRSVQIFSSDKQKEHLHPTQKPVKLLEYLIKTYTNKGETVLDNCIGSGSTAVAA 218

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIA 266
             + R+FIGIE +  Y +IA  R+ 
Sbjct: 219 ININRNFIGIEKEFKYYEIALNRLK 243


>gi|148658589|ref|YP_001278794.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus sp.
           RS-1]
 gi|148570699|gb|ABQ92844.1| DNA methylase N-4/N-6 domain protein [Roseiflexus sp. RS-1]
          Length = 279

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/289 (21%), Positives = 116/289 (40%), Gaps = 53/289 (18%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++II+G+ +  L  L  +S+DL    PPY                D + D + K  SF+ 
Sbjct: 11  NRIIQGDCMEELAALSDESIDLTLFSPPY----------------DGIRD-YKKNWSFD- 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLW--------VIGSYHNIFRIGT-MLQNLNFWILNDIVW 131
                        RV K  G +                 FR+    +  + + +   +++
Sbjct: 53  ----IVELGDQLYRVTKDGGVVVVIIGDGTRQFAKSLTSFRLAVSWVDEIGWKLFECVIY 108

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR---------S 182
            +      +  +RF+  HE ++      + K +  ++  + + +                
Sbjct: 109 HRDGNPGAWWNQRFRVDHEYVLIFFKGERPKTFQKDHLMVPSKHAGKIYSGTDRLTNGGF 168

Query: 183 DWLIPICSGSERLR---------NKDGEKL---HPTQKPEALLSRILVSSTKPGDIILDP 230
             + P      + R         N +G +L   HP   P+ L   I++  ++PGDI+LDP
Sbjct: 169 KRITPKAVNPLKCRGTVWRYATSNTEGNRLKLQHPATFPDKLAEDIILCFSQPGDIVLDP 228

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
             GSGT+  +A+  +R FIGIE+  +Y +IA KR+A ++     + T+ 
Sbjct: 229 MCGSGTTCVMARNHQRHFIGIEISPEYCEIAGKRLA-MEHQPAEQQTLF 276


>gi|46206074|ref|ZP_00047737.2| COG0863: DNA modification methylase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 181

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 83/132 (62%), Positives = 98/132 (74%), Gaps = 1/132 (0%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL-NGQLYRPDHSLVDAVTDSWDKFSSFE 79
           D+I+ G+ I+ +E+LPA SVD +FADPPYNLQL    L RPD S+VDAV D WDKFSSF 
Sbjct: 45  DEILVGDCIAAMERLPASSVDCVFADPPYNLQLGEAGLTRPDQSVVDAVDDDWDKFSSFS 104

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           AYD FTRAWL A RRV+KPN TLWVIGSYHNIFR+G+ LQ+L +WILNDIVWR+  P   
Sbjct: 105 AYDEFTRAWLTAARRVMKPNATLWVIGSYHNIFRVGSALQDLGYWILNDIVWRQGQPDAE 164

Query: 140 FRGRRFQNAHET 151
              +RF      
Sbjct: 165 LPRQRFTTRMRP 176


>gi|76803974|gb|ABA55917.1| hemagglutinin associated protein [Vibrio sp. DAT722]
          Length = 224

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 91/245 (37%), Gaps = 29/245 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +  + +++  L+ L   SVDL   DPPY      +       L ++ + S   FS F   
Sbjct: 3   QTYQMDAVDWLKTLDDSSVDLFITDPPYESLEKHRKIGTTTRLKESKSSSNQWFSIFP-- 60

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           +           RVLK     ++      +F    + + + F     IVW K        
Sbjct: 61  NTRFEELFTEIYRVLKKGSHFYLFCDQETMFVAKPIAEQVGFKFWKPIVWDKC---AIGM 117

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G  ++  +E +++     +                      D  IP       L  K   
Sbjct: 118 GYHYRARYEFILFFEKGKRKLN-------------------DLSIPDV-----LEYKRVW 153

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           + +PT+KP  LL  ++  S+   D++ D FFGSG++   A  L R ++G ++     +  
Sbjct: 154 RGYPTEKPVDLLEVLIKQSSSEHDVVADSFFGSGSTLIAANNLSRKYLGCDVSDSAHEHF 213

Query: 262 TKRIA 266
             R+ 
Sbjct: 214 NNRLK 218


>gi|260588437|ref|ZP_05854350.1| DNA (cytosine-5-)-methyltransferase [Blautia hansenii DSM 20583]
 gi|260541311|gb|EEX21880.1| DNA (cytosine-5-)-methyltransferase [Blautia hansenii DSM 20583]
          Length = 238

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/252 (25%), Positives = 96/252 (38%), Gaps = 32/252 (12%)

Query: 22  KIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           ++ + +   V+  L      VD I  DPPY ++                   WDK  +  
Sbjct: 6   ELYQADCFDVMNDLIKQDVKVDAIICDPPYLIK----------------QADWDKEFN-- 47

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                    +  C  +LK NG L +   + N+ +   +L    F I N IVW +      
Sbjct: 48  -----MPLAINLCYDLLKDNGNLILFQGWSNVLQTKELLDE-KFEIQNWIVWDRIKGRG- 100

Query: 140 FRGRRFQNAHETLIWASP---SPKAKGYTFNYDALKAANEDVQMRSDWLIPIC-SGSERL 195
              + F +  E ++W          K Y+          +        L  +    S  +
Sbjct: 101 -AKKNFVSTREDILWYCKGDKPTFNKIYSNIPKKTGGMGKKNGQECRALTNVWYDISPIV 159

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                   HPTQKP  L+ R +   T  GD +LD   GSGT+G   K L R FIGIE ++
Sbjct: 160 PWSKERNGHPTQKPLQLMERCVTIWTNEGDTVLDFTMGSGTTGEACKNLNRKFIGIEKEE 219

Query: 256 DYIDIATKRIAS 267
           +Y +IA  R+  
Sbjct: 220 EYFNIAKDRLKE 231


>gi|308095386|ref|ZP_05905466.2| DNA (cytosine-5-)-methyltransferase [Vibrio parahaemolyticus
           Peru-466]
 gi|308125326|ref|ZP_05774521.2| DNA (cytosine-5-)-methyltransferase [Vibrio parahaemolyticus K5030]
 gi|308088761|gb|EFO38456.1| DNA (cytosine-5-)-methyltransferase [Vibrio parahaemolyticus
           Peru-466]
 gi|308111010|gb|EFO48550.1| DNA (cytosine-5-)-methyltransferase [Vibrio parahaemolyticus K5030]
          Length = 220

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 58/245 (23%), Positives = 106/245 (43%), Gaps = 33/245 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV--DAVTDSWDKFSSFEA 80
           + + ++++ L  L A SVDL+  DPPY      +       L    A ++ W      + 
Sbjct: 3   LFQDDAVTWLSTLDAASVDLLITDPPYESLEKHRKIGTTTRLKVSKASSNQWFDIFPNDR 62

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           ++A     L    RVLK +   ++      +F I  + + + F     IVW K   +   
Sbjct: 63  FEAL----LSEVYRVLKNHSHFYLFCDQETMFVIKPIAEKIGFKFWKPIVWDK---VSIG 115

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G  ++  HE +++     +                      D  IP     + L +K  
Sbjct: 116 MGYHYRARHEYILFFEKGKRKLN-------------------DLSIP-----DILTHKRV 151

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            + +PT+KP +LL  ++  S++ G++++DPFFGSG++   AK L R F G ++ Q   + 
Sbjct: 152 YRGYPTEKPVSLLEVLVAQSSRDGELVVDPFFGSGSTLVAAKNLNRRFKGNDISQSAHEH 211

Query: 261 ATKRI 265
             +R+
Sbjct: 212 IHQRM 216


>gi|28897168|ref|NP_796773.1| haemagglutinin associated protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|28805377|dbj|BAC58657.1| haemagglutinin associated protein [Vibrio parahaemolyticus RIMD
           2210633]
          Length = 221

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 58/245 (23%), Positives = 106/245 (43%), Gaps = 33/245 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV--DAVTDSWDKFSSFEA 80
           + + ++++ L  L A SVDL+  DPPY      +       L    A ++ W      + 
Sbjct: 4   LFQDDAVTWLSTLDAASVDLLITDPPYESLEKHRKIGTTTRLKVSKASSNQWFDIFPNDR 63

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           ++A     L    RVLK +   ++      +F I  + + + F     IVW K   +   
Sbjct: 64  FEAL----LSEVYRVLKNHSHFYLFCDQETMFVIKPIAEKIGFKFWKPIVWDK---VSIG 116

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G  ++  HE +++     +                      D  IP     + L +K  
Sbjct: 117 MGYHYRARHEYILFFEKGKRKLN-------------------DLSIP-----DILTHKRV 152

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            + +PT+KP +LL  ++  S++ G++++DPFFGSG++   AK L R F G ++ Q   + 
Sbjct: 153 YRGYPTEKPVSLLEVLVAQSSRDGELVVDPFFGSGSTLVAAKNLNRRFKGNDISQSAHEH 212

Query: 261 ATKRI 265
             +R+
Sbjct: 213 IHQRM 217


>gi|396849|emb|CAA45447.1| unnamed protein product [Vibrio cholerae]
 gi|746236|prf||2017285G hemagglutinin
          Length = 217

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 91/243 (37%), Gaps = 29/243 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KI + +++  L+ L   SVDL   DPPY      +       L ++ + S   FS F   
Sbjct: 3   KIYQMDAVDWLKTLENCSVDLFITDPPYESLEKYRQIVTTTRLKESKSSSNQWFSVFP-- 60

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           +           RVLK     ++      +F    + +++ F     IVW K        
Sbjct: 61  NTRFEELFREVYRVLKKGSHFYLFCDQETMFLAKPIAESVGFKFWKPIVWDKCRIG---M 117

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G  ++  +E +++     +                         +   S  + L  K   
Sbjct: 118 GYHYRARYEFILFFEKGKRK------------------------LNDLSVPDVLEYKRVW 153

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K +PT+KP  LL  ++  S+   +I+ D FFGSG +   A  L R +IG ++     +  
Sbjct: 154 KGYPTEKPVELLEVLIRQSSSENEIVADSFFGSGATLIAANNLSRKYIGCDISMSAHEYF 213

Query: 262 TKR 264
             R
Sbjct: 214 KNR 216


>gi|153951324|ref|YP_001398064.1| DNA methylase [Campylobacter jejuni subsp. doylei 269.97]
 gi|152938770|gb|ABS43511.1| DNA methylase [Campylobacter jejuni subsp. doylei 269.97]
          Length = 250

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 59/259 (22%), Positives = 111/259 (42%), Gaps = 34/259 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I+  + I  + K+   S+DLI ADPPY  Q+ G+               +  F     Y
Sbjct: 4   EIVNSDIIEYITKIADNSIDLIIADPPYF-QIKGEF-------------DFGVFKDKHEY 49

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHN----IFRIGTMLQNLNFWILNDIVWRKSNPM 137
            ++ + WL+  +R+LK  G++ + GS  N      R+  M+++ N ++  + + ++ N  
Sbjct: 50  LSWCKKWLIESKRILKDTGSMILWGSVGNREITFARLAIMIEDENIFLRKNWITQR-NTR 108

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                  + +  E  ++ +    +  YTFN       +      ++   P  +  +R+ N
Sbjct: 109 GIGTKTNYMSVREDFLFLTK---SNNYTFNIPYTNEKSTRKDFGANGK-PRKNTHKRVSN 164

Query: 198 -----------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                            HPT K + L  RI+ + +  GD I  PF GSG+    A +  R
Sbjct: 165 VWADIAEASQSSIERCNHPTVKAQKLCDRIIQTHSNEGDTIFVPFVGSGSEIISAIRNNR 224

Query: 247 SFIGIEMKQDYIDIATKRI 265
              G E+ ++Y ++A  R+
Sbjct: 225 KAFGCEINKEYCNLAKDRV 243


>gi|157364418|ref|YP_001471185.1| DNA methylase N-4/N-6 domain-containing protein [Thermotoga
           lettingae TMO]
 gi|157315022|gb|ABV34121.1| DNA methylase N-4/N-6 domain protein [Thermotoga lettingae TMO]
          Length = 412

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 63/310 (20%), Positives = 107/310 (34%), Gaps = 36/310 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G+S   + ++  +SVDLI   PPY            H     +        S   Y
Sbjct: 6   KIIIGDSRK-MPEIDDESVDLIVTSPPY-----------WHIKDYGIKGQIGYGQSLHEY 53

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHN--------------IFRIGTMLQNLNFWILN 127
                     C RVLKP   L +                       I    +++ F  + 
Sbjct: 54  LKDLYRVWNECFRVLKPGRRLCINIGDQFARSAIYGRYKIIPLHAEIVAQCEDIGFDYMG 113

Query: 128 DIVWRKSNPMPNFRGRRFQNAHET-------LIWASPSPKAKGYTFNYDALKAANEDVQM 180
            I+W+K   M    G     ++         + +       K    +  +     +    
Sbjct: 114 SIIWQKKTTMNTSGGANVMGSYPYPPNGMIEIDYEFILIFKKPGKSSKASADIKEKSKLT 173

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           + +W                +  H    PE L  R++   T  GD +LDPF GSGT+  +
Sbjct: 174 KEEWKEYFYG--HWYFGGAKQIGHEAMFPEELPRRLIKMYTFVGDTVLDPFLGSGTTAKM 231

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           + ++ R+ IG E+   ++ +   +I S + L      V   KR E ++  + +     I+
Sbjct: 232 SLEIGRNAIGYEINDKFLTVIENKIESKKNLFQSNFNVEIIKR-EHKINVDEINYTPTIK 290

Query: 301 PGQILTNAQG 310
             + L N Q 
Sbjct: 291 DAKPLINPQK 300


>gi|315445346|ref|YP_004078225.1| DNA modification methylase [Mycobacterium sp. Spyr1]
 gi|315263649|gb|ADU00391.1| DNA modification methylase [Mycobacterium sp. Spyr1]
          Length = 352

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 74/365 (20%), Positives = 110/365 (30%), Gaps = 121/365 (33%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
            +++II G+++  L  LP  SVD +   PPY    N                        
Sbjct: 8   HRNRIIVGDALKKLSGLPDASVDCVITSPPYFSLRNY-----------GADGQIGLERHV 56

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLW-VIGSYHNIF---------------RIGTMLQNLN 122
           + +     A      RVL P GT W  +G  ++                 R+   LQ   
Sbjct: 57  DQWVDHLAAISGQVARVLVPTGTYWLNLGDTYSAHQAQGAARKSLLMAPERLALRLQRDG 116

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA-------- 174
           + I N I+W K NPMP     R   AHE +   +  P+   Y F+ DA++          
Sbjct: 117 WIIRNKIIWAKPNPMPTSIPDRLNTAHEVIYVMARQPQ---YFFDLDAIRVPHVSVRTTV 173

Query: 175 ---------NEDVQMRSDWLIPICSGSERLR--NKDGEKLHP------------------ 205
                    N     R  W  P       L      G+  HP                  
Sbjct: 174 SGSGSGSGRNHTPLHREPWRGPNSDTVTGLAALKASGQVGHPLGKNPGDVWTITPGGYRS 233

Query: 206 ---TQKPEALLSRILVSSTK--------------------------------------PG 224
                 P  L  R++ +                                           
Sbjct: 234 AHHAIYPLTLAERMIAAGCPEARCARCRLPWRRKVIRGLGRTATRAALTPTCTCTTGSEA 293

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            ++LDPF GSGT+   A+   R ++GIE+  D+   A +RI             +  +R 
Sbjct: 294 GLVLDPFMGSGTTAVAAQNYGRDWLGIELNPDFAATARQRI-------------VEERRK 340

Query: 285 EPRVA 289
            PR  
Sbjct: 341 PPRAP 345


>gi|317059623|ref|ZP_07924108.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
           3_1_5R]
 gi|317060406|ref|ZP_07924891.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
           D12]
 gi|313685299|gb|EFS22134.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
           3_1_5R]
 gi|313686082|gb|EFS22917.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
           D12]
          Length = 311

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 68/316 (21%), Positives = 111/316 (35%), Gaps = 86/316 (27%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           + G+    L+ +  +S+D I   PPY    +             V++      S E Y  
Sbjct: 1   MHGDCSEYLKTIKTESIDCIVTSPPYWQLRDY-----------GVSNQIGMEESIEEYID 49

Query: 84  FTRAWLLACRRVLKPNGTLW-VIGSYHNI------------------------------- 111
                +    RVLK +GT +  +G  ++                                
Sbjct: 50  KLMNIMNELYRVLKKSGTFFLNLGDTYSNVNSKFYPANKMKDNKFSWIEGTVVSRKTNIL 109

Query: 112 --------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
                    R+   + +  + + N+I+W K N +P     RF N  E + + +    ++ 
Sbjct: 110 RKSKMMIPERLSIRMIDSGWILRNEIIWHKPNALPESLTDRFTNDFEKIFFFTK---SQK 166

Query: 164 YTFNYDALKAANEDVQMRSDWLIPICSGS------------------------------- 192
           Y F       + + +    D ++P                                    
Sbjct: 167 YYFQKQYEPYSEKTLHSFKDGIMPTGKKKMLSAGESKMAMKKIDKPWRAVYNEKGRNMRT 226

Query: 193 -ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
              + NK   + H    PE L+ R L+S      I+LDPF GSGT+  VAK L  + IGI
Sbjct: 227 VWSIANKGLREGHYASFPEKLVERCLLSGCPQNGIVLDPFLGSGTTLKVAKNLNLNGIGI 286

Query: 252 EMKQDYIDIATKRIAS 267
           E+K++YIDIA  RI  
Sbjct: 287 ELKKEYIDIAVHRIGE 302


>gi|215487725|ref|YP_002330156.1| predicted methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215265797|emb|CAS10205.1| predicted methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 246

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 57/256 (22%), Positives = 96/256 (37%), Gaps = 33/256 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT--------DSWD 73
            +  G+ + VL  L ++  D +  DPPY+   +G  ++ D S+  +          +   
Sbjct: 10  TLYCGDVLDVLPAL-SERFDAVITDPPYS---SGGTHKSDRSMAPSDKYVGHTQYAEFSG 65

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                 ++  ++  W+    R+++P G + V   +  +  +  + Q         +VW K
Sbjct: 66  DNRDQRSWAYWSTLWMSGAARLVRPGGYVMVFSDWRQLPTMTDVFQAGGVLWRGLVVWDK 125

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
           +          F++  E ++W S     K                        P   G  
Sbjct: 126 TQASRAPHTGYFRHQAEYVVWGSNGKLDK-----------------CPHGGPFP---GVI 165

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
             R    EKLH T KP  L++ ++     P   +LDPF GSGT+          F GIEM
Sbjct: 166 TQRVVPSEKLHMTAKPVQLMAELVK-PLAPDAHVLDPFMGSGTTAIPVLARGGRFTGIEM 224

Query: 254 KQDYIDIATKRIASVQ 269
              Y DIA  R+   Q
Sbjct: 225 TNQYFDIACARLEKAQ 240


>gi|304389868|ref|ZP_07371827.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315656924|ref|ZP_07909811.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|304327044|gb|EFL94283.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315492879|gb|EFU82483.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 411

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 87/251 (34%), Gaps = 34/251 (13%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G++     +   +  K  +L+  DPPYN+                ++   DK  
Sbjct: 161 RHRLVCGDATSADDIATLMDGKRANLVLTDPPYNVAFESG---------SGLSIKNDKMD 211

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             + YD F  +       V +   + +V  +               F++    +W K + 
Sbjct: 212 GEKFYD-FLLSAFTNMAGVCEKGASAYVFHADTEGLNFRRAFAEAGFYLSGCCIWVKDSL 270

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +       +Q  HE +++         +  +       N     R               
Sbjct: 271 V--LGRSPYQWQHEPVLYGWVKTGKHRWYADRKQTTIWNFAKPRR--------------- 313

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                  HPT KP  LL+  + +ST+   I+LD F GSG++    +   R    +E+ + 
Sbjct: 314 ----NADHPTSKPLDLLAYPIGNSTQANAIVLDTFAGSGSTLMACEATDRICYCMELDEK 369

Query: 257 YIDIATKRIAS 267
           Y  +  +R A 
Sbjct: 370 YASVILRRYAE 380


>gi|226303534|ref|YP_002763492.1| DNA methyltransferase [Rhodococcus erythropolis PR4]
 gi|226182649|dbj|BAH30753.1| probable DNA methyltransferase [Rhodococcus erythropolis PR4]
          Length = 291

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 62/309 (20%), Positives = 111/309 (35%), Gaps = 70/309 (22%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
           ++    A  E  N   +W  ++++G+    L+ L  +SVD +   PPY  Q + +     
Sbjct: 8   AESEPFAAGERPNGT-KW--QVLQGDCRVALQDLAPESVDCVVTSPPYYWQRDYE----- 59

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW-VIGSYHN---------- 110
                 V   +    S + +    R    A R  LK  GT++  +G  +           
Sbjct: 60  ------VAGQFGLEPSIDGFVDNLREAFAALRPALKNTGTVFLNLGDTYYSAKGRPHGTD 113

Query: 111 -----------------------------IFRIGTMLQNLNFWILNDIVWRKSNPMPNF- 140
                                         +R+   LQ   + + + I+W + + +P   
Sbjct: 114 AKHRSRRLPGLRAVDGPGLGLPRKSLIGIPWRVALALQEDGWTLRSTIIWVRKSAIPEPT 173

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
              R    +E +   S SP    Y F+ + L    +       W I      E  R    
Sbjct: 174 SKDRPWRKYEHIFLFSKSP---KYYFDREGLNGEED------VWFI------EPDRKSLA 218

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
              H    P  L+ R + S    G ++LDPF G GT+  VA  + RS IG+E+  ++  +
Sbjct: 219 RGTHYAPYPRKLVERCINSGCPEGGVVLDPFLGGGTTMYVADAMGRSSIGVELNPEFCSL 278

Query: 261 ATKRIASVQ 269
               + +++
Sbjct: 279 VADNMTAME 287


>gi|227874998|ref|ZP_03993147.1| adenine-specific DNA-modification methylase [Mobiluncus mulieris
           ATCC 35243]
 gi|227844447|gb|EEJ54607.1| adenine-specific DNA-modification methylase [Mobiluncus mulieris
           ATCC 35243]
          Length = 354

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 96/228 (42%), Gaps = 20/228 (8%)

Query: 51  LQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
           +   GQ Y+     V +  D       F  Y  F    L    RVLKP+GTL++   Y  
Sbjct: 126 VGFKGQSYKTIRGQVTSYNDE------FADYWGFLAPRLEEAWRVLKPSGTLYLHLDYRE 179

Query: 111 IFRIGTMLQNL--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN- 167
           +     +L  L      LN+I+W           RR+   H+ ++     P  K Y F+ 
Sbjct: 180 VHYAKVLLDALFGRECFLNEIIWAYDYGART--KRRWPAKHDNILVYVKDP--KQYYFDS 235

Query: 168 -------YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
                  Y A      +   R      +   +        +  + TQKPE +L RI+ +S
Sbjct: 236 ESVDREPYMAPGLVTAEKAARGKLPTDVWWHTIVSPTGKEKTGYATQKPEGILRRIVAAS 295

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           ++PGD +LD F GSGT+GAVA K+ R F+ ++     I +   R A+ 
Sbjct: 296 SRPGDWVLDFFAGSGTTGAVAGKMGRHFVLVDENPQAIAVMRARFAAA 343



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
          + +I G+++ VL  L  ++  LI+ DPP+N   
Sbjct: 34 NTVIHGDNLPVLRGLADETFQLIYVDPPFNTGK 66


>gi|294861398|gb|ADF45504.1| DNA methylase-like protein [Wolbachia endosymbiont of Culex
           quinquefasciatus]
          Length = 402

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 61/273 (22%), Positives = 103/273 (37%), Gaps = 41/273 (15%)

Query: 21  DKIIKGNSISVLEK----LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            +I  G+S SV+E     L  K  D+   DPPYN+       R D  +++          
Sbjct: 157 HRIYCGDS-SVVESYKALLDDKMADITVCDPPYNVDYGSSQEREDKKILNDNQG------ 209

Query: 77  SFEAYDAFTRAWLLACRRVLKPN-GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
             E Y+ F       C  +L    G +++  S      +    +         I+W K++
Sbjct: 210 --EKYELFLYDI---CSHILAYTKGAIYICISSSEFSTLQKAFEEAGGKWSTFIIWAKNH 264

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
                     Q  +E +++   S   + +                   W     +     
Sbjct: 265 FTLGRSDY--QRQYEAMLYGWKSGNKREWH----------GGRNQSDLWFYDKPT----- 307

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                  LHPT KP  L+ R +V+S++PGDI+LDPF GSG++    ++  R    IE+  
Sbjct: 308 ----HNTLHPTMKPVELMERAIVNSSRPGDIVLDPFSGSGSTLIACERTGRICRTIELDS 363

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
            ++D+  KR    Q     E  +    +T P +
Sbjct: 364 KFVDVTIKRW---QVYTGREAILSGTGKTFPEI 393


>gi|110004952|emb|CAK99283.1| hypothetical n-6 adenine-specific dna methyltransferase protein
           [Spiroplasma citri]
 gi|110005588|emb|CAK99908.1| hypothetical adenine specific dna methyltransferase protein
           [Spiroplasma citri]
          Length = 266

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 57/265 (21%), Positives = 105/265 (39%), Gaps = 36/265 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNL-QLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++  G+S+ +L+K+P KS+DLI  DPPY    +  +L   +  +   +    D   S   
Sbjct: 7   ELYLGDSLEILKKIPDKSIDLILTDPPYLYPDIAKKLENKEKHIKYNLKKIQDPNCSNIQ 66

Query: 81  Y------DAFTR----------AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
           Y        F +          ++     R++K    +  +        +  +       
Sbjct: 67  YQIRKRELEFLQGEFISSFDIPSYFKEWMRIIKKPNFIIYLSKQQLKDYLIEI--ENYNL 124

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
               I+++K+N  P+    R     E  ++   +P +    +N D               
Sbjct: 125 KFELIIYKKTNDAPSNTIYRK--DKELCLYIYKNPISYSNVWNQDMQT------------ 170

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
              I   +       G   HPT K   L+   +   +K GD +LD F GSGT+    ++L
Sbjct: 171 ---IYQITNSNNQFIGNIKHPTVKDINLIKLQINKHSKVGDTVLDCFLGSGTTAIACEQL 227

Query: 245 RRSFIGIEMKQDYIDIATKRIASVQ 269
            R +IGIE+ + Y  +A +R+ ++Q
Sbjct: 228 SRRWIGIEINEKYYKLAKQRLNNIQ 252


>gi|167746051|ref|ZP_02418178.1| hypothetical protein ANACAC_00746 [Anaerostipes caccae DSM 14662]
 gi|167654566|gb|EDR98695.1| hypothetical protein ANACAC_00746 [Anaerostipes caccae DSM 14662]
          Length = 422

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 56/279 (20%), Positives = 113/279 (40%), Gaps = 37/279 (13%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G++     V   +  K  +L+  DPPYN+              D ++   DK +
Sbjct: 170 RHRLMCGDATSIEDVDALMDGKKANLVITDPPYNVAFESS---------DGLSIKNDKMA 220

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           + + Y  F  +        L+  G+ +V  +            +  F +    +W K++ 
Sbjct: 221 NDKFY-EFLLSAFKNMANHLESGGSAYVFHADTEGLNFRRAFIDAGFHLSGCCIWVKNSL 279

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +        Q  HE +++     K      +Y +  A              I +  +  +
Sbjct: 280 VLGRSDY--QWQHEPVLYGFLPGK------HYWSKAAGRSQTT--------IWNFDKPKK 323

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           NK+    HPT KP  LL+  + +S++   II+D F GSG++    +K  R    +E+ + 
Sbjct: 324 NKN----HPTSKPLDLLAYPVGNSSRENAIIIDTFGGSGSTLMTCEKTNRICYTMELDEK 379

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
           Y  +  +R   V+  G+ E   +   R   ++A++ LV+
Sbjct: 380 YASVILRRY--VEDTGDAENVFVI--RNGEKLAYSDLVK 414


>gi|313888413|ref|ZP_07822081.1| DNA (cytosine-5-)-methyltransferase [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845610|gb|EFR33003.1| DNA (cytosine-5-)-methyltransferase [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 321

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 68/324 (20%), Positives = 117/324 (36%), Gaps = 90/324 (27%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + II  ++IS L++ P K+ D     PPY      + Y+ +  +         +  S E
Sbjct: 9   TNYIINLDAISALKEFPDKTFDCCITSPPY---YGLRDYKAEGQI--------GREESPE 57

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHN----------------------------- 110
            Y           +RVLK  GTLW++                                  
Sbjct: 58  EYLNKLIEVFREVKRVLKKEGTLWIVIGDSYAGTRSKKEYKDPKNTEGRSGQKESITEKL 117

Query: 111 -----------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
                       +++   L+   +++ +DI+W K N MP     R   ++E +   S   
Sbjct: 118 SGYKAKDLMGIPWQLALKLREEGWYLRSDIIWHKENAMPESCRDRPSRSYEHIFLLSK-- 175

Query: 160 KAKGYTFNYDALKAANEDVQMRS---------------------------DWLIPICSGS 192
            A+ Y +N+DA+K   +++  +                            ++   I    
Sbjct: 176 -ARKYFYNFDAMKEPIKEISKKRYMRARGKNNKYLQEGTGAKRQSINEAREYGEYIGDNV 234

Query: 193 ERLRNKDG---------EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
            + RN            +  H    P  L+   + +      +ILDPF GSGT G VA +
Sbjct: 235 PKFRNNRDIWTINTSAFKGKHYAVFPPKLVELCIKAGCPKKGLILDPFMGSGTVGMVAIR 294

Query: 244 LRRSFIGIEMKQDYIDIATKRIAS 267
           + R +IGI++ +DY  IA +RI  
Sbjct: 295 MDREYIGIDINKDYCQIAKERIEK 318


>gi|163816174|ref|ZP_02207542.1| hypothetical protein COPEUT_02358 [Coprococcus eutactus ATCC 27759]
 gi|158448594|gb|EDP25589.1| hypothetical protein COPEUT_02358 [Coprococcus eutactus ATCC 27759]
          Length = 321

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 119/298 (39%), Gaps = 49/298 (16%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKG--NSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
           M ++ SL    + +     + K++    +    L++LP KS+ LI  DPPYNL+L G   
Sbjct: 19  MRKEESLKNKISSDFEMPAEIKLLHSISDCGVFLKQLPDKSIQLICIDPPYNLELAG--- 75

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR----- 113
                        WD    +E Y  +   W+    RVL  NG++ + G            
Sbjct: 76  -------------WDI---YENYIEWASKWIYEAYRVLSDNGSMVIFGGIQFRDAKSGDL 119

Query: 114 ---IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
              I  + +N  F ++N I+W   N M     R F N HE  IW      +  Y F+ D+
Sbjct: 120 LDIIQYIRKNTKFKLVNTIIWHYKNGMSAH--RFFANRHEEAIWLVK---SNDYYFDLDS 174

Query: 171 LKAA---------------NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
           ++                 N +   +      +        N      HPTQKP A++ R
Sbjct: 175 VRVPYSEEDLKVALRDKRLNPETTRKGKNPTNVWEIGRLNGNSKERVGHPTQKPVAIIER 234

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
            + + + PG  +LD F GSGT G V     R+ +  +     ++   K I+ ++ LG 
Sbjct: 235 FIKALSYPGATVLDFFAGSGTVGRVCINEGRNCLMCDSDNKSLEYFAKHISLMEELGQ 292


>gi|134288033|ref|YP_001110197.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134132683|gb|ABO60309.1| DNA methylase N-4/N-6 domain protein [Burkholderia vietnamiensis
           G4]
          Length = 252

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 60/260 (23%), Positives = 111/260 (42%), Gaps = 41/260 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +++G+ + +LE +P  S+D++  D PY                      WD         
Sbjct: 9   LMQGDCLELLETIPDNSIDMVCCDMPYGT----------------TNCRWDATLD----- 47

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
              R      RRV   N  + +       F     + NL  W+  +++W+K++   +   
Sbjct: 48  --LRRLWAQYRRVTTENAAIVLFA--QTPFDKVLGVSNL-EWLRYELIWQKTHATGHLNA 102

Query: 143 RRF-QNAHETLI-WASPSPKAK-----GYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           ++    AHE ++ + +  P        G+       +  N  V    +++      ++R 
Sbjct: 103 KKMPMKAHENILVFYNKLPTYNPQKTTGHIRKTSVKRRDNTSVYGEQNFVELSYESTDRH 162

Query: 196 RN------KDGEK--LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                   KD ++  LHPTQKP AL+  ++ + T  GD +LD   GSGT+G   ++L R 
Sbjct: 163 PRSVLTFPKDTQRIALHPTQKPLALIEWLVSTFTNEGDAVLDNCMGSGTTGEACQRLGRR 222

Query: 248 FIGIEMKQDYIDIATKRIAS 267
           F+G+E+ + +  +A+ RI S
Sbjct: 223 FVGMELDESHFAVASSRILS 242


>gi|283796833|ref|ZP_06345986.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. M62/1]
 gi|291075240|gb|EFE12604.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. M62/1]
          Length = 454

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 105/284 (36%), Gaps = 23/284 (8%)

Query: 20  KDKIIKGNSI--SVLE-KLPAKSVDLIFADPPYNLQLNGQLYRPDH----SLVDAVTDSW 72
           + +++ G+S     +   +  +  DL+  DPPYN+    +    D          +    
Sbjct: 173 RHRLMCGDSTSQDDMAVLMNGEIADLVVTDPPYNVNYGDKAEMLDEYLPAKGHRNINHIK 232

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           +     +++ +F  A   +    ++    ++V  +            +    +   ++W 
Sbjct: 233 NDNMDNQSFYSFLLATYQSAYEFMRAGAAIYVFHAESTGHIFRQAFLDAGLKLAQCLIWE 292

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ----MRSDWLIPI 188
           K+  +     + +Q  HE  ++      A  +  +        ED      M+ + L+  
Sbjct: 293 KNAFV--LGRQDYQWRHEPCLYGWKEGAAHYFINDRTQDTVILEDDIDFSAMKKNELVAY 350

Query: 189 ----------CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
                      +            +HPT KP AL+ + + +S+K G  +LD F GSG++ 
Sbjct: 351 LEELRRKNRDQTSVIYENKPTRNDIHPTMKPIALVGKFITNSSKSGWNVLDLFGGSGSTL 410

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
             A++L R+   +E+ + + D+  KR         + +     K
Sbjct: 411 MAAEQLGRTAFIMELDERFCDVIVKRWEDYTGQQAVRIPAEDVK 454


>gi|268610664|ref|ZP_06144391.1| DNA methylase [Ruminococcus flavefaciens FD-1]
          Length = 419

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 100/286 (34%), Gaps = 38/286 (13%)

Query: 20  KDKIIKGNSI--SVLEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G++     +  L      +LI  DPPY +                +T   D   
Sbjct: 169 RHRLMCGDATSPEDVNTLMGNTKANLILTDPPYGVSFKSS---------SGLTIQNDSMK 219

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           + E Y  F  +        L+  G  +V  +            +  F +    +W K + 
Sbjct: 220 NEEFY-NFLLSAFKCMADHLEKGGAAYVFHADTEGLNFRRAFIDAGFHLAGCCIWVKDSL 278

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +        Q  HE +++         +  +       + D   R               
Sbjct: 279 VLGRSDY--QWQHEPVLYGFMQNGKHKWYSDRKQTTIWHFDKPKR--------------- 321

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                  HPT KP  LL   + +ST+   +++D F GSG++    +++ R    +E+ + 
Sbjct: 322 ----NANHPTSKPLDLLGYPIGNSTQENAMVIDTFGGSGSTLMACEQMNRICYMMELDEK 377

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPG 302
           Y  +  +R   V+  G+ E   +   R   ++ ++ LV+    + G
Sbjct: 378 YASVILRRY--VEDTGDAEGVYVI--RNGQQIPYSDLVKEVETKEG 419


>gi|294861400|gb|ADF45505.1| DNA methylase-like protein [Wolbachia endosymbiont of Culex
           pipiens]
          Length = 398

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 57/249 (22%), Positives = 96/249 (38%), Gaps = 38/249 (15%)

Query: 21  DKIIKGNSISVLEK----LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            +I  G+S SV+E     L  K  D+   DPPYN+       R D  +++          
Sbjct: 157 HRIYCGDS-SVVESYKALLDDKMADITICDPPYNVDYGSSQEREDKKILNDNQG------ 209

Query: 77  SFEAYDAFTRAWLLACRRVLKPN-GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
             E Y+ F       C  +L    G +++  S      +    +         I+W K++
Sbjct: 210 --EKYELFLYDI---CSHILAYTKGAIYICISSSEFSTLQKAFEEAGGKWSTFIIWAKNH 264

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
                     Q  +E +++   S   + +                   W     +     
Sbjct: 265 FTLGRSDY--QRQYEAMLYGWKSGNKREWH----------GGRNQSDLWFYDKPT----- 307

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                  LHPT KP  L+ R +V+S++PGDI+LDPF GSG++    ++  R    IE+  
Sbjct: 308 ----HNTLHPTMKPVELMERAIVNSSRPGDIVLDPFSGSGSTLIACERTGRICRTIELDS 363

Query: 256 DYIDIATKR 264
            ++D+  KR
Sbjct: 364 KFVDVTIKR 372


>gi|303233583|ref|ZP_07320241.1| DNA (cytosine-5-)-methyltransferase [Finegoldia magna BVS033A4]
 gi|302495327|gb|EFL55075.1| DNA (cytosine-5-)-methyltransferase [Finegoldia magna BVS033A4]
          Length = 321

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 68/324 (20%), Positives = 117/324 (36%), Gaps = 90/324 (27%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + II  ++IS L++ P K+ D     PPY      + Y+ +  +         +  S E
Sbjct: 9   TNYIINLDAISALKEFPDKTFDCCITSPPY---YGLRDYKAEGQI--------GREESPE 57

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHN----------------------------- 110
            Y           +RVLK  GTLW++                                  
Sbjct: 58  EYLNKLIEVFREVKRVLKKEGTLWIVIGDSYAGTRSKKEYKDPKNTEGRSGQKESITEKL 117

Query: 111 -----------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
                       +++   L+   +++ +DI+W K N MP     R   ++E +   S   
Sbjct: 118 SGYKAKDLMGIPWQLALKLREDGWYLRSDIIWHKENAMPESCRDRPSRSYEHIFLLSK-- 175

Query: 160 KAKGYTFNYDALKAANEDVQMRS---------------------------DWLIPICSGS 192
            A+ Y +N+DA+K   +++  +                            ++   I    
Sbjct: 176 -ARKYFYNFDAMKEPIKEISKKRYMRARGKNNKYLQEGTGAKRQSINEAREYGEYIGDNV 234

Query: 193 ERLRNKDG---------EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
            + RN            +  H    P  L+   + +      +ILDPF GSGT G VA +
Sbjct: 235 PKFRNNRDIWTINTSAFKGKHYAVFPPKLVELCIKAGCPKKGLILDPFMGSGTVGMVAIR 294

Query: 244 LRRSFIGIEMKQDYIDIATKRIAS 267
           + R +IGI++ +DY  IA +RI  
Sbjct: 295 MDREYIGIDINKDYCQIAKERIEK 318


>gi|227484714|ref|ZP_03915030.1| site-specific DNA-methyltransferase (cytosine-N(4)-specific)
           [Anaerococcus lactolyticus ATCC 51172]
 gi|227237299|gb|EEI87314.1| site-specific DNA-methyltransferase (cytosine-N(4)-specific)
           [Anaerococcus lactolyticus ATCC 51172]
          Length = 321

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 68/325 (20%), Positives = 119/325 (36%), Gaps = 92/325 (28%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + II  ++IS L++ P K+ D     PPY      + Y+ +  +         +  S E
Sbjct: 9   TNYIINLDAISALKEFPDKTFDCCITSPPY---YGLRDYKAEGQI--------GREESPE 57

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHN----------------------------- 110
            Y           +RVLK  GTLW++                                  
Sbjct: 58  EYLNKLIEVFREVKRVLKKEGTLWIVIGDSYAGTRSKKEYKDPKNIEGRSGQKESITEKL 117

Query: 111 -----------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
                       +++   L+   +++ +DI+W K N MP     R   ++E +   S   
Sbjct: 118 SGYKAKDLMGIPWQLALKLREDGWYLRSDIIWHKENAMPESCRDRPSRSYEHIFLLSK-- 175

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL---------------- 203
            A+ Y +N+DA+K   +++  +  ++    + ++ L+   G K                 
Sbjct: 176 -ARKYFYNFDAMKEPIKEISKKR-YMRARGNNNKYLQEGTGAKRQSINEAREYGEYIGDN 233

Query: 204 ---------------------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
                                H    P  L+   + +      +ILDPF GSGT G VA 
Sbjct: 234 VPKFRNNRDIWTINTSAFKGKHYAVFPPKLVELCIKAGCPKKGLILDPFMGSGTVGMVAI 293

Query: 243 KLRRSFIGIEMKQDYIDIATKRIAS 267
           ++ R +IGI++ +DY  IA +RI  
Sbjct: 294 RMDREYIGIDINKDYCQIAKERIEK 318


>gi|304439292|ref|ZP_07399209.1| site-specific DNA-methyltransferase (cytosine-N(4)-specific)
           [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372260|gb|EFM25849.1| site-specific DNA-methyltransferase (cytosine-N(4)-specific)
           [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 321

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 69/324 (21%), Positives = 117/324 (36%), Gaps = 90/324 (27%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + II  ++IS L++ P K+ D     PPY      + Y+ +  +         +  S E
Sbjct: 9   TNYIINLDAISALKEFPDKTFDCCITSPPY---YGLRDYKAEGQI--------GREESPE 57

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHN----------------------------- 110
            Y           +RVLK  GTLWV+                                  
Sbjct: 58  EYLNKLIEVFREVKRVLKKEGTLWVVIGDSYAGTRSKKEYKDPKNIEGRSGQKESITEKL 117

Query: 111 -----------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
                       +++   L+   +++ +DI+W K N MP     R   ++E +   S   
Sbjct: 118 SGYKAKDLMGIPWQLALKLREDGWYLRSDIIWHKENAMPESCRDRPSRSYEHIFLLSK-- 175

Query: 160 KAKGYTFNYDALKAANEDVQMRS---------------------------DWLIPICSGS 192
            A+ Y +N+DA+K   +++  +                            ++   I    
Sbjct: 176 -ARKYFYNFDAMKEPIKEISKKRYMRARGKNNKYLQEGTGAKRQSINEAREYGEYIGDNV 234

Query: 193 ERLRNKDG---------EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
            + RN            +  H    P  L+   + +      +ILDPF GSGT G VA +
Sbjct: 235 PKFRNNRDIWTINTSAFKGKHYAVFPPKLVELCIKAGCPKKGLILDPFMGSGTVGMVAIR 294

Query: 244 LRRSFIGIEMKQDYIDIATKRIAS 267
           + R +IGI++ +DY  IA +RI  
Sbjct: 295 MDREYIGIDINKDYCQIAKERIEK 318


>gi|144898902|emb|CAM75766.1| DNA methylase N-4/N-6:ParB-like nuclease [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 410

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 98/249 (39%), Gaps = 36/249 (14%)

Query: 21  DKIIKGNS--ISVLEKLPAKS-VDLIFADPPYNLQLNG--QLYRPDHSLVDAVTDSWDKF 75
            +++ G++  ++ +EK+   S  DL F DPPYN+      +  + D  +++         
Sbjct: 162 HRLLCGSATVLADVEKVLGGSLADLCFCDPPYNVDYGAPTKTAKKDRRILNDSLG----- 216

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
              + +  F     +    V K  G++++  S   +  +              +VW K+ 
Sbjct: 217 ---DGFRQFLYDASVNILTVTK--GSVYMCMSSSELHTLQGAFMEAGGHWSTFVVWAKNT 271

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
                     Q  +E +++               A      D      W +   + ++  
Sbjct: 272 FTLGRADY--QRQYEPILYGWKEG----------ADHYWCGDRDQGDVWFVNKPAKND-- 317

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                  LHPT KP  L+ R + +S+K  DI+LDPF GSGT+    ++  R    IE+  
Sbjct: 318 -------LHPTMKPVELVERAIRNSSKSRDIVLDPFGGSGTTLIACERTGRQARLIELAP 370

Query: 256 DYIDIATKR 264
            Y+D+  +R
Sbjct: 371 RYVDVIVRR 379


>gi|158520956|ref|YP_001528826.1| DNA methylase N-4/N-6 domain-containing protein [Desulfococcus
           oleovorans Hxd3]
 gi|158509782|gb|ABW66749.1| DNA methylase N-4/N-6 domain protein [Desulfococcus oleovorans
           Hxd3]
          Length = 301

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 61/260 (23%), Positives = 104/260 (40%), Gaps = 35/260 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +   + I V+  + ++SVD IFADPP+NL         D+              + + Y 
Sbjct: 46  LYNDDIIKVIPYVHSESVDTIFADPPFNLSKIYGNNVNDN-------------LTEKEYL 92

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           ++ + WL  C RVLKP G +++         +G  L        + I       +P    
Sbjct: 93  SWCKTWLDQCIRVLKPGGAIFIYNLPKWNIILGNHLSEAGMTFRHWIAVDIKLSLPIPG- 151

Query: 143 RRFQNAHETLIWASP----------------SPKAKGYTFNYDALKAANEDVQMRSDWLI 186
            R   +H ++++ +                     K         +A N +    +D   
Sbjct: 152 -RLYPSHYSMLYYTKGKPKTFRRVRTPIEVCRHCGKEIKDYGGHRRAMNPNGVNLTDVWH 210

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            I     R       +    Q    LL R++  ST+  DI+LDPF GSGT+  V ++L+R
Sbjct: 211 DIT--PVRHWKFKSRRRSANQLSTKLLERVIQLSTQEYDIVLDPFGGSGTTYDVCERLQR 268

Query: 247 SFIGIEMKQDYIDIATKRIA 266
            +IGIE++    D+  +R+ 
Sbjct: 269 HWIGIEIES--CDVIIERLQ 286


>gi|315168838|gb|EFU12855.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX1341]
          Length = 398

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 55/253 (21%), Positives = 103/253 (40%), Gaps = 36/253 (14%)

Query: 20  KDKIIKGNS-----ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           + +++ G+S     I +L  +  +  DL+  DPPYN+   G+          A+    D 
Sbjct: 167 RHRLMCGDSTNKAHIELL--MDGEKADLLITDPPYNVNYEGKT-------EAALKIKNDN 217

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            ++ E Y +F R+   +    LK   + +V  +   +      L +  F +  +++W K+
Sbjct: 218 KTASEFY-SFLRSAFSSTYDNLKEGASFYVWYASSEVINFVNSLVDSQFMVKQELIWLKN 276

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           + +   +   +Q  HE  ++      +  +  +               D+  PI +    
Sbjct: 277 SFVLGRQDYHWQ--HEPCLYGWKKDGSHRWYGD--------RKQTTVLDFDKPIAN---- 322

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                  K HPT KP  L    + +S+K GD ILD F GSGT+    ++  R    +E+ 
Sbjct: 323 -------KEHPTMKPIPLFDYQIKNSSKKGDKILDIFGGSGTTMIACEQNDRQAYLMELD 375

Query: 255 QDYIDIATKRIAS 267
             Y+D+   R   
Sbjct: 376 PKYVDVIINRWEE 388


>gi|298373418|ref|ZP_06983407.1| DNA modification methylase [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298274470|gb|EFI16022.1| DNA modification methylase [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 364

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 58/277 (20%), Positives = 96/277 (34%), Gaps = 49/277 (17%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           + + + ++ L++    S+DLI   PPY  Q                            Y 
Sbjct: 102 LFRDDCLNKLKQFKDDSIDLIITSPPYADQRKKTYGG----------------IPPNKYV 145

Query: 83  AFTRAWLLACRRVLKPNGTLWVIG--------SYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            +  +      RVLKP+GT  +              +  +   ++   +    + +W K 
Sbjct: 146 EWFLSISEQLLRVLKPSGTFILNIKEKVSQGERSTYVIELVLEMKKQGWLWTEEFIWHKK 205

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTF-------------------------NYD 169
           N  P     RF+++ E L+  + + K   Y                           N  
Sbjct: 206 NSFPGKWSNRFRDSWERLLQFNKNKKFNMYQDAVKIPIGDWASDRLKKLSDVDKIRDNAK 265

Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
                 + V       +   S    L  +   K H    PE+L    +   T+ GDI+LD
Sbjct: 266 NGSGFGKKVSNWLGKDMVYPSNVLYLATECNNKKHSAAFPESLPEWFIKLFTQEGDIVLD 325

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           PF GSGT+ +VA +L R  IGIE+   YI++      
Sbjct: 326 PFVGSGTTLSVAYRLNRKSIGIEIIPQYIEVIKNNFK 362


>gi|312623436|ref|YP_004025049.1| DNA methylase N-4/N-6 domain-containing protein
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203903|gb|ADQ47230.1| DNA methylase N-4/N-6 domain protein [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 412

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 70/338 (20%), Positives = 125/338 (36%), Gaps = 47/338 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G+S + + ++  +++DLI   PPY            H     V +      +   Y
Sbjct: 5   KIIIGDSRN-MSEIDNETIDLIITSPPY-----------WHLKDYGVANQIGYGQTLHEY 52

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHN--------------IFRIGTMLQNLNFWILN 127
                     C RVLK    L +                       I    +++ F  + 
Sbjct: 53  LKDLYRVWQECFRVLKEGRRLCINIGDQFARSIVYGRYKIIPLHSEIIAQCEDIGFDYMG 112

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETL------IWASPSPKAKGYTFNYDALKAANEDVQMR 181
            I+W+K   M    G     ++         I        K +  +        E   + 
Sbjct: 113 AIIWQKKTTMNTSGGANVMGSYPYPPNGMIEIDYEFILIFKKHGKSPKVSPEIKEKSVLT 172

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
            +      SG    + +  +  H    P+ L  R++   +  GD +LDPF GSGT+  VA
Sbjct: 173 KEEWKEYFSGHWYFKGEK-QTEHEAMFPDELPYRLIKMFSFVGDTVLDPFLGSGTTLKVA 231

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQP---------LGNIELTVLTGKRTEPRV-AFN 291
            +L R+ IG E+  D++++  K++ ++               E   +   + EPR+   +
Sbjct: 232 LELERNGIGYEINPDFLEVINKKLNTINNSFLYKIETIKKETETPEIKAVKYEPRIKDAS 291

Query: 292 LLVERGLIQPGQILTNAQGNISATVCADG-TLISGTEL 328
            +++  +I+P +   N    +S  V AD   L SG E+
Sbjct: 292 PIIDPKIIEPKK---NQYFKVSEIVSADTVKLNSGLEV 326


>gi|312128656|ref|YP_003993530.1| DNA methylase N-4/N-6 domain-containing protein
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311778675|gb|ADQ08161.1| DNA methylase N-4/N-6 domain protein [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 412

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 70/339 (20%), Positives = 129/339 (38%), Gaps = 49/339 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G+S + + ++  +++DLI   PPY            H     V +      +   Y
Sbjct: 5   KIIIGDSRN-MSEIDNETIDLIITSPPY-----------WHLKDYGVANQIGYGQTLHEY 52

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHN--------------IFRIGTMLQNLNFWILN 127
                     C RVLK    L +                       I    +++ F  + 
Sbjct: 53  LKDLYRVWQECFRVLKEGRRLCINIGDQFARSIVYGRYKIIPLHSEIIAQCEDIGFDYMG 112

Query: 128 DIVWRKSNPMPNFRGRRFQNAHET-------LIWASPSPKAKGYTFNYDALKAANEDVQM 180
            I+W+K   M    G     ++         + +       K       + +   + +  
Sbjct: 113 AIIWQKKTTMNTSGGANVMGSYPYPPNGMIEIDYEFILIFKKPGKSPKVSPEIKEKSILT 172

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           + +W     SG    + +  +  H    P+ L  R++   +  GD +LDPF GSGT+  V
Sbjct: 173 KEEWKE-YFSGHWYFKGEK-QTEHEAMFPDELPYRLIKMFSFVGDTVLDPFLGSGTTLKV 230

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQP---------LGNIELTVLTGKRTEPRV-AF 290
           A +L R+ IG E+  D++++  K++ ++              IE   +   + EPR+   
Sbjct: 231 ALELERNGIGYEINPDFLEVINKKLNTINNSFLYKIETIKKEIETPEIKAVKYEPRIKDA 290

Query: 291 NLLVERGLIQPGQILTNAQGNISATVCADG-TLISGTEL 328
           + +++  +I+P +   N    +S  V AD   L SG E+
Sbjct: 291 SPIIDPKIIEPKK---NQYFKVSEIVSADTVKLNSGLEV 326


>gi|254507558|ref|ZP_05119691.1| DNA methylase [Vibrio parahaemolyticus 16]
 gi|219549445|gb|EED26437.1| DNA methylase [Vibrio parahaemolyticus 16]
          Length = 231

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 104/244 (42%), Gaps = 33/244 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV--DAVTDSWDKFSSFEA 80
           + + +++  L  L   SVDL+  DPPY      +       L    A ++ W +    + 
Sbjct: 16  LFQDDAVKWLSTLDTASVDLLITDPPYESLEKHRKIGTTTRLKVSKASSNQWFEIFPNDR 75

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           ++A     L    RVLK +   ++      +F I  + + + F     IVW K   +   
Sbjct: 76  FEAL----LSEVYRVLKNHSHFYLFCDQETMFVIKPIAEKIGFKFWKPIVWDK---VSIG 128

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G  ++  HE +++     +                      D  IP     + L +K  
Sbjct: 129 MGYHYRARHEYILFFEKGKRKLN-------------------DLSIP-----DILTHKRV 164

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            + +PT+KP +LL  ++V S++ G++++DPFFGSG++   +K L R F G ++     + 
Sbjct: 165 YRGYPTEKPVSLLEVLVVQSSREGELVVDPFFGSGSTLVASKNLNRQFKGNDISSSAHEH 224

Query: 261 ATKR 264
             +R
Sbjct: 225 IRQR 228


>gi|218961788|ref|YP_001741563.1| putative Modification methylase BamHII (N-4 cytosine-specific
           methyltransferase BamHII) (M.BamHII) [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730445|emb|CAO81357.1| putative Modification methylase BamHII (N-4 cytosine-specific
           methyltransferase BamHII) (M.BamHII) [Candidatus
           Cloacamonas acidaminovorans]
          Length = 273

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 57/281 (20%), Positives = 95/281 (33%), Gaps = 63/281 (22%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I + + +  L+KLP   +DL  + PPY                       D    +  
Sbjct: 8   NDIYQTDCVEGLKKLPENCIDLCVSSPPY-----------------------DGIRDYHG 44

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNI--------FRIG-TMLQNLNFWILNDIVW 131
           +        +   RV+K  G   ++              FR       N  F +   +++
Sbjct: 45  FSLDLHNVGIELYRVMKEGGIAVMVMQDQTRNFAKSLTTFRTAIDWCDNAGFRLFETLIY 104

Query: 132 RKSNPMPNFRGRRFQNAHETLI---------WASPSPKAKGYTFNYDALKAA-------- 174
           RK      +   RF+  HE ++         +    P           L           
Sbjct: 105 RKYGAEGGWWKTRFRVDHEFMLVFLKGQRPQYFDKEPLKIPSKHGGKTLTGGGTRLTNGI 164

Query: 175 ---------NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
                    NE     + W         RL++K     HP   P+ L    +     P  
Sbjct: 165 RIPTRPILINEMKCRGTVWEYLTAGDGSRLKHK-----HPATFPDKLPYDFIQCFCPPEG 219

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           I+LD F GSGT+   A +L R+F+G E+ ++Y+ +A +RIA
Sbjct: 220 IVLDIFMGSGTTALAAIELNRNFLGFEISEEYVKLAKQRIA 260


>gi|190570706|ref|YP_001975064.1| Phage related DNA methylase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190570760|ref|YP_001975118.1| Phage related DNA methylase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190571683|ref|YP_001976041.1| Phage related DNA methylase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213019711|ref|ZP_03335516.1| Phage related DNA methylase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190356978|emb|CAQ54366.1| Phage related DNA methylase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190357032|emb|CAQ54425.1| Phage related DNA methylase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190357955|emb|CAQ55418.1| Phage related DNA methylase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212994752|gb|EEB55395.1| Phage related DNA methylase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 410

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 61/273 (22%), Positives = 103/273 (37%), Gaps = 41/273 (15%)

Query: 21  DKIIKGNSISVLEK----LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            +I  G+S SV+E     L  K  D+   DPPYN+       R D  +++          
Sbjct: 165 HRIYCGDS-SVVESYKALLDDKMADITVCDPPYNVDYGSSQEREDKKILNDNQG------ 217

Query: 77  SFEAYDAFTRAWLLACRRVLKPN-GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
             E Y+ F       C  +L    G +++  S      +    +         I+W K++
Sbjct: 218 --EKYELFLYDI---CSHILAYTKGAIYICISSSEFSTLQKAFEEAGGKWSTFIIWAKNH 272

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
                     Q  +E +++   S   + +                   W     +     
Sbjct: 273 FTLGRSDY--QRQYEAMLYGWKSGNKREWH----------GGRNQSDLWFYDKPT----- 315

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                  LHPT KP  L+ R +V+S++PGDI+LDPF GSG++    ++  R    IE+  
Sbjct: 316 ----HNTLHPTMKPVELMERAIVNSSRPGDIVLDPFSGSGSTLIACERTGRICRTIELDS 371

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
            ++D+  KR    Q     E  +    +T P +
Sbjct: 372 KFVDVTIKRW---QVYTGREAILSGTGKTFPEI 401


>gi|190570854|ref|YP_001975212.1| Phage related DNA methylase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213019341|ref|ZP_03335148.1| Phage related DNA methylase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357126|emb|CAQ54537.1| Phage related DNA methylase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995450|gb|EEB56091.1| Phage related DNA methylase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 406

 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 57/249 (22%), Positives = 96/249 (38%), Gaps = 38/249 (15%)

Query: 21  DKIIKGNSISVLEK----LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            +I  G+S SV+E     L  K  D+   DPPYN+       R D  +++          
Sbjct: 165 HRIYCGDS-SVVESYKALLDDKMADITVCDPPYNVDYGSSQEREDKKILNDNQG------ 217

Query: 77  SFEAYDAFTRAWLLACRRVLKPN-GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
             E Y+ F       C  +L    G +++  S      +    +         I+W K++
Sbjct: 218 --EKYELFLYDI---CSHILAYTKGAIYICISSSEFSTLQKAFEEAGGKWSTFIIWAKNH 272

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
                     Q  +E +++   S   + +                   W     +     
Sbjct: 273 FTLGRSDY--QRQYEAMLYGWKSGNKREWH----------GGRNQSDLWFYDKPT----- 315

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                  LHPT KP  L+ R +V+S++PGDI+LDPF GSG++    ++  R    IE+  
Sbjct: 316 ----HNTLHPTMKPVELMERAIVNSSRPGDIVLDPFSGSGSTLIACERTGRICRTIELDS 371

Query: 256 DYIDIATKR 264
            ++D+  KR
Sbjct: 372 KFVDVTIKR 380


>gi|54309137|ref|YP_130157.1| putative haemagglutinin associated protein [Photobacterium
           profundum SS9]
 gi|46913569|emb|CAG20355.1| Putative haemagglutinin associated protein [Photobacterium
           profundum SS9]
          Length = 219

 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 100/246 (40%), Gaps = 33/246 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV--DAVTDSWDKFSSFE 79
           ++ K ++++ L  L   SVDLI  DPPY      +       L    + ++ W +     
Sbjct: 2   QVFKEDAVTWLSTLADASVDLIVTDPPYESLEKHRKIGTTTRLKVSKSSSNQWFEIFPNN 61

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            ++ F R       RVLK +   ++      +F I  + + + F     I+W K   +  
Sbjct: 62  RFEDFLR----EVYRVLKKDAHFYLFCDQETMFFIKPIAEKVGFKFWKPIIWDK---VSI 114

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
             G  ++  HE +++     +                      D  IP     +R+    
Sbjct: 115 GMGYHYRARHEYILFFEKGKRKLN-------------------DLGIPDILEFKRVY--- 152

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
             + +PT+KP  L+  ++  S+   ++++DPFFGSG +   AK L R ++G ++     +
Sbjct: 153 --RGYPTEKPVELIQTLISQSSANYELVVDPFFGSGATLIAAKNLDRRYMGNDISDAAHE 210

Query: 260 IATKRI 265
               R+
Sbjct: 211 HFRNRL 216


>gi|209524051|ref|ZP_03272602.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
 gi|209495426|gb|EDZ95730.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
          Length = 495

 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 70/324 (21%), Positives = 116/324 (35%), Gaps = 75/324 (23%)

Query: 21  DKIIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQ-----LYRPDHSLVDAVTDSWDK 74
           + +  G+++ VL + +   SVDL + DPP+N + N       +   D +   A  D+W+ 
Sbjct: 3   NYLYYGDNLEVLRRYIKDDSVDLCYIDPPFNSKRNYNQIYNNIGSEDKAQAQAFIDTWEW 62

Query: 75  ----FSSFEA-------------------------------YDAFTRAWLLACRRVLKPN 99
                  FE                                Y       +    RVLKP 
Sbjct: 63  DNRAMHGFEEISTNYNGLFTEQAVYLITGLENVLGKGSLLAYLVSMTLRITEIHRVLKPT 122

Query: 100 GTLWVIGSYHNIFRIGTMLQNL----NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
           G+ ++         +  +L  +        LN+I+W        +  + F   H+ +   
Sbjct: 123 GSFYLHCDPTASHYLKLVLDAVFCSQGGNFLNEIIWCYRGAG--YPKKDFGRRHDLIFRY 180

Query: 156 SP-------------------SPKAKGYTFNY-----DALKAANEDVQMRSDWLIPICSG 191
           S                      +   Y  N         ++ N   +   DW       
Sbjct: 181 SKGKEFTFNLDSVREEYAETTKKRFSHYIGNKRGKKDFGQQSLNPLGKQPDDW----WEI 236

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
                +      +PTQKPEALL RI+ +S+  GDI+LD + G GT+ AV +K  R +IGI
Sbjct: 237 QPIAPSARERLGYPTQKPEALLERIIKASSNEGDIVLDAYCGCGTTVAVCEKFNRKWIGI 296

Query: 252 EMKQDYIDIATKRIASVQPLGNIE 275
           ++    I +  KR+      G +E
Sbjct: 297 DITYQSISLILKRLEDSFGKGVLE 320


>gi|153010509|ref|YP_001371723.1| DNA methylase N-4/N-6 domain-containing protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|151562397|gb|ABS15894.1| DNA methylase N-4/N-6 domain protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 247

 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 67/268 (25%), Positives = 100/268 (37%), Gaps = 46/268 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            I+ G+    +        D+I ADPPY                           +  A+
Sbjct: 2   TILTGDCREEMPWHAP--YDMIIADPPYG-------------------------DTSLAW 34

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D     W++  R  L+P G+LWV GS  +         +    I  +IVW K N    F 
Sbjct: 35  DRRVEGWVVLARAALRPTGSLWVFGSLRSFMATADRFTDAGLRIAQEIVWEKQNGTG-FH 93

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP-------------- 187
             RF+  HE  +   P+  A    +N            +R     P              
Sbjct: 94  ADRFKRVHELAVQFYPAETAWRDIYNDVQTTPDATARTVRRKQRPPHTGQIDAGHYVSHD 153

Query: 188 ----ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
               +      LRN  G  +HPT+KP ALL  ++ +S   G ++ D F GSG +G   + 
Sbjct: 154 GGPRLMRSVIYLRNCHGRAIHPTEKPSALLEILIRTSCPEGGLVGDWFAGSGAAGEACRL 213

Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPL 271
             R ++G E+  D  + A  RIA+V P 
Sbjct: 214 SGRRYLGCEIDPDMAECARARIATVLPF 241


>gi|298372547|ref|ZP_06982537.1| DNA (cytosine-5-)-methyltransferase [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298275451|gb|EFI17002.1| DNA (cytosine-5-)-methyltransferase [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 280

 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 105/261 (40%), Gaps = 25/261 (9%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           I  +++K+   + + +L+ LP  S+D+++ DP YN+ +N              T  W   
Sbjct: 2   IENFRNKVFNEDVLKILKSLPDNSLDMVYGDPDYNVGINYAGR--------NYTQKW--- 50

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
                Y  +         RVLKP G L+++        +     + N + ++D VW  + 
Sbjct: 51  ---AEYIEWYVDLATESMRVLKPTGNLFMMNYPKQNAYLRVKYLDNNAYDVSDYVWIYNT 107

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            + +   R+   AH +++ A+ S     Y  N  ++   N   +     +    +G    
Sbjct: 108 NVGHS-PRKLTTAHRSILHATKSKNNAFYKDN-ISVPYQNPTDKRIMKRIADGHTGRMPY 165

Query: 196 RN---------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                         +  H  Q P  L+  ++ S T+  D     F GSG+   + K L+R
Sbjct: 166 SWFYYDLVKNVSKDKTFHSCQIPLPLVEMLIKSCTREQDDCFILFGGSGSELVLCKNLKR 225

Query: 247 SFIGIEMKQDYIDIATKRIAS 267
           ++I  E+  +Y  +  +R+ +
Sbjct: 226 NYISCELHPEYYQMILERLNN 246


>gi|87199473|ref|YP_496730.1| DNA methylase N-4/N-6 [Novosphingobium aromaticivorans DSM 12444]
 gi|87135154|gb|ABD25896.1| DNA methylase N-4/N-6 [Novosphingobium aromaticivorans DSM 12444]
          Length = 435

 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 62/252 (24%), Positives = 114/252 (45%), Gaps = 16/252 (6%)

Query: 21  DKIIKGNSIS--VLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            ++  G+      L  +    K++D  F DPPYN+++NG           A+        
Sbjct: 178 HRLGCGDGRDAAFLRAVVGEGKAIDCAFLDPPYNVKINGHANARGRHREFAMAS---GEM 234

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           +  A+  F    L A   V +P    +V   + ++  +      +   +LN  VW KSN 
Sbjct: 235 TTAAFRTFLAETLGASAAVSRPGAVHFVCMDWRHMDDVSAAATPVYDDLLNICVWNKSNA 294

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
                G  +++ HE +++    P A       +A++         + W     + S R  
Sbjct: 295 G---MGSLYRSKHE-MVFVYRVPGAPH----TNAVELGRHGRNRTNVWDYASVN-SMRGS 345

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
            ++   LHPT KP A+++  +   T+ GD++LD F GSGT+   A+++ R+F GI++   
Sbjct: 346 RREDLALHPTVKPVAMVADAICDVTRQGDLVLDIFSGSGTTLIAAERVGRAFRGIDIDPA 405

Query: 257 YIDIATKRIASV 268
           Y+D+A  R +++
Sbjct: 406 YVDVALDRWSAL 417


>gi|58696775|ref|ZP_00372310.1| DNA methylase [Wolbachia endosymbiont of Drosophila simulans]
 gi|225630341|ref|YP_002727132.1| DNA methylase [Wolbachia sp. wRi]
 gi|225630735|ref|YP_002727526.1| DNA methylase [Wolbachia sp. wRi]
 gi|58537028|gb|EAL60168.1| DNA methylase [Wolbachia endosymbiont of Drosophila simulans]
 gi|116486897|emb|CAH64692.1| DNA methylase [Wolbachia endosymbiont of Drosophila teissieri]
 gi|116486899|emb|CAH64693.1| DNA methylase [Wolbachia endosymbiont of Drosophila simulans]
 gi|225592322|gb|ACN95341.1| DNA methylase [Wolbachia sp. wRi]
 gi|225592716|gb|ACN95735.1| DNA methylase [Wolbachia sp. wRi]
          Length = 408

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 94/247 (38%), Gaps = 34/247 (13%)

Query: 21  DKIIKGNS--ISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +I  G+S  +   +  L  K  D+   DPPYN+       R D  +++           
Sbjct: 166 HRIYCGDSCVVESFKAVLDDKMADITVCDPPYNVDYGSSQEREDKKILNDNQG------- 218

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E Y+ F            K  G +++  S      +    +         I+W K++  
Sbjct: 219 -EKYELFLYDICSNILAYTK--GAIYICISSSEFSTLQKAFEEAGGKWSTFIIWAKNHFT 275

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                   Q  +E +++   S   + +          N+      D  I           
Sbjct: 276 LGRSDY--QRQYEAMLYGWKSGNKREW------HGGRNQSDLWFYDKPI----------- 316

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
                LHPT KP  L+ + +V+S++PGD +LDPF GSG++    ++  R    IE+   +
Sbjct: 317 --HNSLHPTMKPVELMEKAIVNSSRPGDTVLDPFSGSGSTLIACERTGRICRTIELDSKF 374

Query: 258 IDIATKR 264
           +D+A KR
Sbjct: 375 VDVAIKR 381


>gi|150377536|ref|YP_001314131.1| site-specific DNA-methyltransferase (adenine-specific)
           [Sinorhizobium medicae WSM419]
 gi|150032083|gb|ABR64198.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Sinorhizobium medicae WSM419]
          Length = 707

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 73/321 (22%), Positives = 135/321 (42%), Gaps = 63/321 (19%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVD----------LIFADPPYNL 51
           +Q++  + +     +  W +K+I G++  +L  L    +           LI+ DPP+++
Sbjct: 74  AQQDLFSTDSRGRQLQGWNNKLIWGDNKLILSSLKNGPLRQEIERHGGLKLIYIDPPFDV 133

Query: 52  Q--------LNGQLYRPDHSLVD--AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
                    +    +    ++++  A  D+W + +  +++ A     L+ CR +L   G+
Sbjct: 134 GADFSMDIEIGDDTFTKKPNILEEIAYRDTWGRGA--DSFIAMIYERLILCRDLLADEGS 191

Query: 102 LWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRR-FQNAHETLIWASPS 158
           ++V   +   + I +++  +    +  N+I+W   N +    G + F   H+ L+  S  
Sbjct: 192 IFVHCDWRVNWAIRSVMNEIFGANFFRNEIIWHYENKLGTGWGAKTFDTRHDVLLRFSKG 251

Query: 159 PKAKGYTFNYDALKAANEDVQMR------------------------------SDWLIPI 188
              K Y  N  A K   E +Q                                  W IPI
Sbjct: 252 ---KKYVHNEIAEKVKVEKMQPVTKKVEGERIWLRNDDGSLMYAEGAKERPVGDVWTIPI 308

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
            +             +PTQKPE L+ RI++S +  GD+I D F GSGT+ AVA+KL R +
Sbjct: 309 INPV-----ATERLNYPTQKPEKLIERIILSGSNEGDLIADFFVGSGTTAAVAEKLGRKW 363

Query: 249 IGIEMKQDYIDIATKRIASVQ 269
           I  ++ +  +    KR+  VQ
Sbjct: 364 IVSDLGKFAVHTTRKRMIGVQ 384


>gi|227875052|ref|ZP_03993197.1| ParB family DNA methylase [Mobiluncus mulieris ATCC 35243]
 gi|306817339|ref|ZP_07451084.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris ATCC
           35239]
 gi|227844330|gb|EEJ54494.1| ParB family DNA methylase [Mobiluncus mulieris ATCC 35243]
 gi|304649780|gb|EFM47060.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris ATCC
           35239]
          Length = 411

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 90/251 (35%), Gaps = 34/251 (13%)

Query: 20  KDKIIKGNSISV--LEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G++ SV  +E L      +L+  DPPYN+                ++   DK  
Sbjct: 161 RHRLVCGDATSVEDVELLMDGKRANLVLTDPPYNVAFESG---------SGLSIKNDKMD 211

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             + YD F  +       V +   + +V  +               F++    +W K + 
Sbjct: 212 GDKFYD-FLLSAFSNMVGVCEKGASAYVFHADTEGLNFRRAFVEAGFYLSGCCIWVKDSL 270

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +       +Q  HE +++         +  +       N     R               
Sbjct: 271 V--LGRSPYQWQHEPVLFGWVKTGKHKWYADRKQTTIWNFAKPRR--------------- 313

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                  HPT KP  LL+  + +ST+   I+LD F GSG++   A+   R    +E+ + 
Sbjct: 314 ----NADHPTSKPLDLLAYPIGNSTQANAIVLDTFAGSGSTLMAAEATDRICYCMELDEK 369

Query: 257 YIDIATKRIAS 267
           Y  +  +R A 
Sbjct: 370 YASVILRRYAE 380


>gi|304390296|ref|ZP_07372249.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304326052|gb|EFL93297.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 416

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 90/251 (35%), Gaps = 34/251 (13%)

Query: 20  KDKIIKGNSISV--LEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G++ SV  +E L      +L+  DPPYN+                ++   DK  
Sbjct: 166 RHRLVCGDATSVEDVELLMDGKRANLVLTDPPYNVAFESG---------SGLSIKNDKMD 216

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             + YD F  +       V +   + +V  +               F++    +W K + 
Sbjct: 217 GDKFYD-FLLSAFSNMVGVCEKGASAYVFHADTEGLNFRRAFVEAGFYLSGCCIWVKDSL 275

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +       +Q  HE +++         +  +       N     R               
Sbjct: 276 V--LGRSPYQWQHEPVLFGWVKTGKHKWYADRKQTTIWNFAKPRR--------------- 318

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                  HPT KP  LL+  + +ST+   I+LD F GSG++   A+   R    +E+ + 
Sbjct: 319 ----NADHPTSKPLDLLAYPIGNSTQANAIVLDTFAGSGSTLMAAEATDRICYCMELDEK 374

Query: 257 YIDIATKRIAS 267
           Y  +  +R A 
Sbjct: 375 YASVILRRYAE 385


>gi|219872033|ref|YP_002476408.1| Modification methylase HindIII [Haemophilus parasuis SH0165]
 gi|219692237|gb|ACL33460.1| Modification methylase HindIII (M.HindIII) [Haemophilus parasuis
           SH0165]
          Length = 331

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 63/297 (21%), Positives = 113/297 (38%), Gaps = 48/297 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG--QLYRPDHSLVDAVTDSWDKFSS 77
           KD I   +SI  ++ + + S+  I +D PY +  +    L+   +S +   + +  K S 
Sbjct: 2   KDCIYNDDSIIAIKNIKSNSIHSIISDIPYGIDYDDWDTLHSNTNSALGGSSIAQQKTSL 61

Query: 78  F------------------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
           F                  + Y  +  +W     RVLK   ++++        R+    +
Sbjct: 62  FKRRGKPLNGWSEADKRRPQEYQEWVESWSNEWYRVLKSGSSVFIFAGRQFAHRVIVAFE 121

Query: 120 NLNFWILNDIVWRKSNPMPN-------------------FRGRRFQN---AHETLIWASP 157
           N  F   + + W +                         + G R  N     E ++W   
Sbjct: 122 NSGFTFKDMLSWERDKAPHRAQRISCVFEKRGDTFNQQKWAGWRVANLRPIFEPILWFQK 181

Query: 158 SPKAKGYTFNY---DALKAANEDVQMRSD---WLIPICSGSERLRNKDGEKLHPTQKPEA 211
             K  G   +    + + A NE+     +     +   +  +     +  K H TQKP  
Sbjct: 182 PYKTGGTLADNLIENEVGAWNENALTSWNIQRGALNHSNMFKVQVTTEDRKYHITQKPLN 241

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           L+  ++   TK   I+LDPF GS ++   A++L R FIG E  ++  DIA KR+ + 
Sbjct: 242 LMKLLVELVTKEKQIVLDPFAGSASTLLAARELNRHFIGFEKNKEIYDIAVKRLENT 298


>gi|321272264|gb|ADW80149.1| putative DNA methylase [Wolbachia endosymbiont wVitA of Nasonia
           vitripennis phage WOVitA1]
 gi|321272321|gb|ADW80203.1| putative DNA methylase [Wolbachia endosymbiont wVitB of Nasonia
           vitripennis phage WOVitB]
          Length = 404

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 95/248 (38%), Gaps = 36/248 (14%)

Query: 21  DKIIKGNSISVLEK----LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            +I  G+S SV+E     L  K  D+   DPPYN+       R D  +++          
Sbjct: 163 HRIYCGDS-SVVESYKALLDDKMADITVCDPPYNVDYGSSQEREDKKILNDNQG------ 215

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E Y+ F            K  G +++  S      +  + +         I+W K++ 
Sbjct: 216 --EKYELFLYDICSNILAYTK--GAIYICISSSEFSTLQKVFEEAGGKWSTFIIWAKNHF 271

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
                    Q  +E +++   S   + +                   W     +      
Sbjct: 272 TLGRSDY--QRQYEAMLYGWKSGNKREWH----------GGRNQSDLWFYDKPT------ 313

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                 LHPT KP  L+ R +V+S++PGDI+LDPF GSG++    ++  R    IE+   
Sbjct: 314 ---HNTLHPTMKPVELMERAIVNSSRPGDIVLDPFSGSGSTLIACERTGRICRTIELDSK 370

Query: 257 YIDIATKR 264
           ++D+  KR
Sbjct: 371 FVDVTIKR 378


>gi|225847886|ref|YP_002728049.1| modification methylase MjaVI (N-4
           cytosine-specificmethyltransferase MjaVI) (M.MjaVI)
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643473|gb|ACN98523.1| modification methylase MjaVI (N-4
           cytosine-specificmethyltransferase MjaVI) (M.MjaVI)
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 325

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 56/258 (21%), Positives = 99/258 (38%), Gaps = 27/258 (10%)

Query: 20  KDKIIKGNSISV-LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           K K+   + I V L     K V+LI   PPYN+ +    +              +   ++
Sbjct: 72  KIKLFHNDFIEVDLSDYKGK-VNLIITSPPYNVGIEYGKH--------------NDAVNY 116

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLW--------VIGSYHNIFRIGTMLQNLNFWILNDIV 130
           E Y +FT  WL     +L  +G             G          + + + F   + IV
Sbjct: 117 EDYLSFTEKWLYKSYELLADDGRACINIPLDKNRNGLKPVYADFINIAKKVGFNYQSTIV 176

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W + N         + +A    + A        Y   +  +     +  +  +  I   +
Sbjct: 177 WNEQNVSKRTAWGSWLSASAPYVIAPVEMIVVLYKKQWKRIN--KGESTITREEFIQWTN 234

Query: 191 GSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           G      +  +++ HP   P  L  R +   +   D++LDPF GSGT+   A K  R  I
Sbjct: 235 GVWNFSGESKKRVGHPAPFPLELPKRCIKLFSYKDDLVLDPFSGSGTTLIAAFKEERRAI 294

Query: 250 GIEMKQDYIDIATKRIAS 267
           G+E+ ++YID++ +R+  
Sbjct: 295 GVEIDKNYIDLSVERLTK 312


>gi|15320575|ref|NP_203418.1| DNA adenine methylase Mox [Myxococcus phage Mx8]
 gi|15281685|gb|AAK94340.1|AF396866_5 DNA adenine methylase Mox [Myxococcus phage Mx8]
 gi|2105127|gb|AAC48900.1| DNA adenine methyltransferase [Myxococcus phage Mx8]
          Length = 258

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 58/261 (22%), Positives = 101/261 (38%), Gaps = 44/261 (16%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
            + + L A+SVD I  DPPY                           +   +D +   W 
Sbjct: 21  ELADALQAESVDAIVTDPPYG-------------------------ETALEWDRWPVGWP 55

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAH 149
              R +LK  G++W  GS+   +       +  + +  D+VWRK N    F   RF+  H
Sbjct: 56  GLVRPLLKRTGSMWCFGSFRMWWDKRDEFVSGGWVVAEDVVWRKQNGSG-FATDRFRRVH 114

Query: 150 ETLIWASPSPKAKGYTFNYDALKAANE------------------DVQMRSDWLIPICSG 191
           E  +    +  A    F+   +    +                        D    + + 
Sbjct: 115 EQPVHFYRADAAWRDVFHQVPVTMDAKARTVTRRAQPPHLGAIGAHKYTSEDGGPRLMTS 174

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
              +RN  G  ++ TQKP AL+  ++ ++  PG ++ D F GSG++        R FIG 
Sbjct: 175 VLEVRNCHGFAVNETQKPVALVEPLVRNACPPGGLVADFFAGSGSTALACLATGRRFIGC 234

Query: 252 EMKQDYIDIATKRIASVQPLG 272
           ++++   + A + ++ V PLG
Sbjct: 235 DIREAQCEAAARELSQVLPLG 255


>gi|150009836|ref|YP_001304579.1| putative DNA-methyltransferase [Parabacteroides distasonis ATCC
           8503]
 gi|149938260|gb|ABR44957.1| putative DNA-methyltransferase [Parabacteroides distasonis ATCC
           8503]
          Length = 315

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 69/279 (24%), Positives = 115/279 (41%), Gaps = 60/279 (21%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
             +   +++  L+ +P  SV L+  DPPYNL+L                D WD   SF  
Sbjct: 38  HAVYIQDAVKFLKTVPDSSVQLVLIDPPYNLEL----------------DYWD---SFPN 78

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYH-NIFRIGTMLQ-------NLNFWILNDIVWR 132
           Y  + + W+    R++  NG   + G +     + G +L+       N N  ++N I+W 
Sbjct: 79  YLDWAKQWIDEIYRIMSDNGNCVIFGGFQFQDLKQGDLLEILYYIRHNTNLRLINLIIWY 138

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN----------------- 175
             N M     R F N HE  IW S     K Y F+ D+++                    
Sbjct: 139 YKNGMSAH--RYFANRHEEAIWLSK---TKKYYFDLDSVRVPYSEEAKKAALKDKRLRPE 193

Query: 176 ---EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
              +     + W I   +G     N      HPTQKP  ++ R++ + +  G ++LD F 
Sbjct: 194 NIEKGKNPTNVWEIGRLNG-----NSTERVGHPTQKPTEIIRRLVKALSYEGSLVLDFFA 248

Query: 233 GSGTSGAVAKKLRRSFIGIEMK---QDYIDIATKRIASV 268
           GSGT+G V  +  R  I ++     + Y ++  K+++  
Sbjct: 249 GSGTTGRVCIEENRHSIMVDSDNSLKRYFEMHRKKMSGT 287


>gi|170017230|ref|YP_001728149.1| site-specific DNA-methyltransferase [Leuconostoc citreum KM20]
 gi|169804087|gb|ACA82705.1| Site-specific DNA-methyltransferase [Leuconostoc citreum KM20]
          Length = 610

 Score =  138 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 121/291 (41%), Gaps = 55/291 (18%)

Query: 18  EWKDKIIKGNSISVLEKL-----------PAKS--VDLIFADPPYNLQLNGQLYRPDHSL 64
           EW +KII G+++ VL+ L              S  V +++ DPP+  + + Q        
Sbjct: 77  EWINKIIFGDNLQVLKTLIEWKKDGLLKNKDGSDGVRVVYIDPPFASKQDFQNKDQKA-- 134

Query: 65  VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
                   DK    E Y  + R  L+  R +L  +G ++V   +H +  +  ++  +   
Sbjct: 135 ------YSDKLKGVE-YLEWLRKRLILLREILADDGNIFVHLDWHKMHYVKVLMDEIFGE 187

Query: 125 --ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY------------------ 164
              +NDIVW             F   H+ +++ S   K K                    
Sbjct: 188 ANFVNDIVWSYRTGRG--GNSEFNKQHDDILFYSKQQKHKFNPQREKSYTKSKNRKPGLT 245

Query: 165 ------TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILV 218
                 T  ++  +       MR  W IP  +   +         +PTQKPEALL  I+ 
Sbjct: 246 NYGKATTEFFEDAQGVYRWSSMRDVWDIPYINSQSK-----ERVGYPTQKPEALLEIIIG 300

Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           S++  GD++LD F GSG + AVA+K+ R +I  ++ +  I +  KRI +++
Sbjct: 301 SASDAGDLVLDLFGGSGVTAAVAEKMDRRWITGDVGKLSIYVIQKRILALE 351


>gi|285019155|ref|YP_003376866.1| adn methyltransferase [Xanthomonas albilineans GPE PC73]
 gi|283474373|emb|CBA16874.1| putative adn methyltransferase protein [Xanthomonas albilineans]
          Length = 432

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 58/286 (20%), Positives = 102/286 (35%), Gaps = 42/286 (14%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQL-NGQLYRPDHSLVDAVTDSWDKFS 76
            +++ G++       + L  +  D+ F DPPYN+   N    +  +     + D+     
Sbjct: 183 HRLLCGDATKADDYTQLLGDELPDMAFTDPPYNVNYANAAKDKASNKNRPILNDNLG--- 239

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E +  F     +      K  G +++  S   +  + +  +         I+W K+  
Sbjct: 240 --EGFGGFLTEACMNILGCTK--GAVYIAMSSSELDTLQSAFRAAGGHWSTFIIWAKNTF 295

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
                    Q  +E +++         +    D           ++D             
Sbjct: 296 TMGRADY--QRQYEPILYGWREGIDHFWCGARDQGDVWQIKKPQKND------------- 340

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                 LHPT KP  L+ R + +S+K  DI+LDPF GSG++    +K  R    IE+   
Sbjct: 341 ------LHPTMKPVELVERAVRNSSKTKDIVLDPFGGSGSTLIACEKSGRRARVIELDPK 394

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPG 302
           Y+D+  +R         I        R    VAF   +E    QPG
Sbjct: 395 YVDVIVRRWQDYTGQAAI--------RASDGVAFGSTLEAE--QPG 430


>gi|302383110|ref|YP_003818933.1| DNA methylase N-4/N-6 domain protein [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193738|gb|ADL01310.1| DNA methylase N-4/N-6 domain protein [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 478

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 97/246 (39%), Gaps = 15/246 (6%)

Query: 22  KIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +++  ++       + L  + V ++F DPPYN+ + G +          +        + 
Sbjct: 184 RLLCADATEPASFEQLLTGEQVRVVFTDPPYNVAIAGHVTSGGKHGEFVMAS---GEMTD 240

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           + + AF+   ++  R  L   G L+    + ++              LN IVW K     
Sbjct: 241 DEFTAFSTKVMMRARENLVDGGLLYYCMDHRHMEHTLDAASAAGLDRLNLIVWDKKAGG- 299

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
              G  +++ HE +        +     + + ++         + W     +G    + K
Sbjct: 300 --MGSFYRSRHELIFLFRKPGAS-----HVNRVELGRHGRDRSNVWTYEGVNGFGAAKAK 352

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
              ++HPT KP AL+   ++  T  GD +LD F GSGT+   A+ + R     E+   Y+
Sbjct: 353 -AREMHPTVKPLALVRDAILDCTAKGDAVLDLFSGSGTTVIAAENVGRRGFATELDPRYV 411

Query: 259 DIATKR 264
           D+   R
Sbjct: 412 DVGVLR 417


>gi|224538891|ref|ZP_03679430.1| hypothetical protein BACCELL_03787 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519498|gb|EEF88603.1| hypothetical protein BACCELL_03787 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 288

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 55/270 (20%), Positives = 95/270 (35%), Gaps = 46/270 (17%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
            + I  +  +P   V+ I   PPYNL      Y              D   +F  ++   
Sbjct: 25  ADCIETMNNMPQGVVNTIVTSPPYNLSKKYGKY--------------DDSRTFAEWEELI 70

Query: 86  RAWLLACRRVLKPNGTLWVIGSY----------HNIFRIGTMLQNLNFWILNDIVWRKSN 135
                A   VL PNG+  +  S                   + +   + + N IVW  +N
Sbjct: 71  DKVAEAAYNVLVPNGSFLLNVSPVPDKKTKEIVPLDAIAYFVFKKHGYALRNSIVWHFNN 130

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFN------------------YDALKAANED 177
                   R     E+++W      +  +  +                   +     N D
Sbjct: 131 --MQNCTNRLSGRWESILWFVKDIDSYQFNLDDIRVPYITKNDKRLTGVGRNPTDIWNFD 188

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           +     W     +   +  NK G   HP   P  ++ RI+  +T  G++++DPF GSGT+
Sbjct: 189 IPESDFWYFDRVNNMTK--NKLGLTEHPCIFPTPMIERIIKMTTHKGEVVMDPFLGSGTT 246

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
              A+ L R  +G E+ + +  I  KR+ +
Sbjct: 247 LVAAQNLGRIGLGCELDEKFAPIIEKRVLN 276


>gi|160933418|ref|ZP_02080806.1| hypothetical protein CLOLEP_02264 [Clostridium leptum DSM 753]
 gi|156867295|gb|EDO60667.1| hypothetical protein CLOLEP_02264 [Clostridium leptum DSM 753]
          Length = 279

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 61/283 (21%), Positives = 105/283 (37%), Gaps = 45/283 (15%)

Query: 1   MSQKNSLAINENQNSIFEWKD-----KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ--- 52
           ++QKN LA    ++++    +      I+ G+++ ++     +  D +  DPPY      
Sbjct: 14  LNQKNELAQVVEESTLPIEHNGGDGWTILHGDTLQIIRAFKTQVFDALITDPPYASGGWK 73

Query: 53  ---------LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW 103
                           P ++  D   D+ D+ S    +  +   WL   R+  KP   + 
Sbjct: 74  PAEKNRTTTQKYSSMDPKNAPPDFDGDNRDQRS----WTRWMAEWLYDARKACKPGAPVC 129

Query: 104 VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
           +   +     I   LQ   +     +VW K    P     RF+   E ++W S  P    
Sbjct: 130 LFIDWRQYPSITDALQWAGWIWRGCVVWDKMTSRPQ--KGRFRQQSEYVVWGSNGPM--- 184

Query: 164 YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKP 223
                            R    +P   G  R  N    + H T+KP  L+  ++     P
Sbjct: 185 --------------PVSRPVGCLP---GVFRYANPQ-NRTHVTEKPLQLMRDLVKICV-P 225

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           G  ILDPF G+GT+   A+      +GIE+   Y  + + R+ 
Sbjct: 226 GGRILDPFCGAGTTVLAARLEGYEAVGIEVTDAYYKLGSDRVR 268


>gi|294861402|gb|ADF45506.1| DNA methylase-like protein [Wolbachia endosymbiont of Culex
           molestus]
          Length = 425

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 97/249 (38%), Gaps = 38/249 (15%)

Query: 21  DKIIKGNSISVLEK----LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            +I  G+S SV+E     L  K  D+   DPPYN+       R D  +++          
Sbjct: 157 HRIYCGDS-SVVESYKALLDDKMADITICDPPYNVDYGSSQEREDKKILNDNQG------ 209

Query: 77  SFEAYDAFTRAWLLACRRVLKPN-GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
             E Y+ F       C  +L    G +++  S      +  + +         I+W K++
Sbjct: 210 --EKYELFLYDI---CSHILAYTKGAIYICISSSEFSTLQKVFEEAGGRWSTFIIWAKNH 264

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
                     Q  +E +++   +   + +                   W     +     
Sbjct: 265 FTLGRSDY--QRQYEAMLYGWKNGNKREWH----------GGRNQSDLWFYDKPT----- 307

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                  LHPT KP  L+ R +V+S++PGDI+LDPF GSG++    ++  R    IE+  
Sbjct: 308 ----HNTLHPTMKPVELMERAIVNSSRPGDIVLDPFSGSGSTLIACERTGRICRTIELDS 363

Query: 256 DYIDIATKR 264
            ++D+  KR
Sbjct: 364 KFVDVTIKR 372


>gi|320159714|ref|YP_004172938.1| putative N-4 cytosine-specific methyltransferase [Anaerolinea
           thermophila UNI-1]
 gi|319993567|dbj|BAJ62338.1| putative N-4 cytosine-specific methyltransferase [Anaerolinea
           thermophila UNI-1]
          Length = 304

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 60/277 (21%), Positives = 99/277 (35%), Gaps = 17/277 (6%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II  +S   + +L   +V L    PPY   ++   +  D S         + +  +  Y 
Sbjct: 3   IIYTHSCERMPELEEGAVSLTVTSPPYWNAIDYDRHAEDDSQYYRTRQYANGYQDYHEYL 62

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGS--------YHNIFRIGTMLQNLNFWILNDIVWRKS 134
            +         RV KP G   V+          Y   F + +    + +    DI+W K 
Sbjct: 63  DWLVRIFREVYRVTKPGGFCAVVIGTVLLEGKLYPVPFDMTSQFVQIGWEFYQDIIWHKC 122

Query: 135 NPMP---------NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
                         + G  + N     I     P  + Y       K   +    R   +
Sbjct: 123 TAGVKRAGVSIQKPYPGYFYPNIMNEYILIFRKPGPRIYENRSQEEKEQAQYSIDRLFTM 182

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
               +             HP   PE +  R++   + PGD+ILDPF GSG +  VA+ L 
Sbjct: 183 DIANNIWHIAPVPPKIIPHPAPFPEEIPFRLIQLYSYPGDLILDPFVGSGQTLKVARHLG 242

Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
           R ++G E+ + Y+ +A +RI     L   +L  +  K
Sbjct: 243 RPYVGYEVIEKYVQLAKQRIPEPLDLRQEQLIAVFDK 279


>gi|296126937|ref|YP_003634189.1| DNA methylase N-4/N-6 domain protein [Brachyspira murdochii DSM
           12563]
 gi|296018753|gb|ADG71990.1| DNA methylase N-4/N-6 domain protein [Brachyspira murdochii DSM
           12563]
          Length = 322

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 120/291 (41%), Gaps = 38/291 (13%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
              L   + + S+    +K I  +    +  LP   +DL   DPPYNL  +         
Sbjct: 23  SKRLITLKEKTSLDSILNKTICNDFFESINYLPDNFIDLAIIDPPYNLNKD--------- 73

Query: 64  LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
                 +   +  S   Y+ +  +++      LK   +++V     +   +  +L    F
Sbjct: 74  ----FGNLNFRKKSDNDYNQYIDSFISLIIPHLKKTASIYVCCDLFSSSAVYDVLSK-YF 128

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
            + N I W++           ++NA E + +A+    +  Y FN DA+K     +    +
Sbjct: 129 IVRNRITWQREKGRGAQFN--WKNALEDIWFAT---VSNNYYFNIDAVKMKRRVIAPYRE 183

Query: 184 WLIP-----ICSGSERLRNKDG--------------EKLHPTQKPEALLSRILVSSTKPG 224
              P        G  RL +                    HPTQKPE L++++L++S+K G
Sbjct: 184 EGKPKDWQETEEGKFRLTHPSNFWDDISVPYWSMAENTTHPTQKPEKLIAKLLLASSKEG 243

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           DI+ DPF GSGT+  VA KL R ++ IEM + Y  +   R+       NI+
Sbjct: 244 DIVFDPFVGSGTTVVVANKLNRKYVSIEMDKYYALLTEYRLEKSNTDKNIQ 294


>gi|134297342|ref|YP_001121077.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134140499|gb|ABO56242.1| DNA methylase N-4/N-6 domain protein [Burkholderia vietnamiensis
           G4]
          Length = 420

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 96/247 (38%), Gaps = 30/247 (12%)

Query: 21  DKIIKGNS---ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +++ G++    S  + L  + V +I++D PYN+                + +       
Sbjct: 173 HRLVCGDATQPFSYEQLLAGQRVQMIWSDLPYNVNYANSAKDKLRGKHRPILNDNLG--- 229

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E +  F    L     +   +G +++  S   +  +    +         I+W K    
Sbjct: 230 -EGFYDFVFDALSLM--LPHCDGAVYIAMSSSELDTLQAAFRAAGGKWSTFIIWAKHTFT 286

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                   Q  +E +++  P   ++ +  + D     N     R+D              
Sbjct: 287 LGRADY--QRQYEPILYGWPEGSSRHWCGDRDQGDVWNIKKPARND-------------- 330

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
                LHPT KP  L+ R + +S++PGD++LD F GSG++   A+K  R    +E++  Y
Sbjct: 331 -----LHPTMKPVELMERSIRNSSRPGDVVLDCFGGSGSTLIAAEKSGRRCFMMELEPKY 385

Query: 258 IDIATKR 264
            D+  +R
Sbjct: 386 CDVIVRR 392


>gi|118576081|ref|YP_875824.1| DNA modification methylase [Cenarchaeum symbiosum A]
 gi|118194602|gb|ABK77520.1| DNA modification methylase [Cenarchaeum symbiosum A]
          Length = 320

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 64/293 (21%), Positives = 113/293 (38%), Gaps = 37/293 (12%)

Query: 7   LAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           ++I++++  I    D++   +S  ++ ++P  S++ +   PPY    +  L         
Sbjct: 31  MSISKSRARIRLDTDRVYYKDSR-MMTEIPDNSINCVITSPPYFSINDYSLDGYQRKRHS 89

Query: 67  AVTDSW-DKFSSFEAYDAFTRAWLLACRRVLKPNGTL-------------WVIGSYHNIF 112
               +       FE Y          C RVL+PNG L             +      +IF
Sbjct: 90  GNKAAQLGNIKKFETYIGELLKVWSECERVLRPNGKLIINAPLMPMLKRVYNTHFNRHIF 149

Query: 113 RIGT-----MLQNLNFWILNDIVWRKSNPM--------PNFRGRRFQNAHETLIWASPSP 159
            I +     +L +   ++L+  +W ++NP         P       QN  E +       
Sbjct: 150 NIHSEIQRSILDDTGLFLLDVYIWNRTNPSKKPMFGSYPYPSNFYAQNTIEFIAVYVKDG 209

Query: 160 KAKGYTFNYDALK----AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
           K+          +            +  W IP+ +  +    K     HP   PE +  R
Sbjct: 210 KSDNNISKTRKRRSRLTQKEWVEYTKQVWDIPMPNKGDSAFGK-----HPAIMPEEIPRR 264

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            +   T  GD++LDPF GSGT+  +AKKL R +IG E+ + Y    T+++   
Sbjct: 265 CIRLFTFEGDVVLDPFSGSGTTLKMAKKLNRKYIGYEIMKSYKGHITEKLGEA 317


>gi|114798140|ref|YP_761238.1| DNA methylase [Hyphomonas neptunium ATCC 15444]
 gi|114738314|gb|ABI76439.1| DNA methylase [Hyphomonas neptunium ATCC 15444]
          Length = 450

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 104/252 (41%), Gaps = 16/252 (6%)

Query: 20  KDKIIKGNSISVLE---KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G+ +  L+    +  +   + F DPPYN+++ G +   DH      +       
Sbjct: 184 QHRLLCGSCLEPLDWQCLMRGERARVCFTDPPYNVKIKGHVSSKDHDEFAMGSSE----M 239

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           S E + AF    L             ++   + ++  +      L    LN  VW K+N 
Sbjct: 240 SPEQFVAFLYGALGGAVEWSIDGAIHYICMDHRHMRELYAAADPLYSAQLNLCVWAKTNG 299

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
                G  +++ HE +          G   + + ++         + W     +   + R
Sbjct: 300 G---MGSFYRSRHELVAVYKV-----GTAPHINNVQLGRFGRNRTNVWSYAGANTFRKGR 351

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           +KD    HPT KP  +++  ++ ++ PGDI +D F GSGT    A++  R    IE++  
Sbjct: 352 DKDI-ADHPTVKPVTMVADAIMDASAPGDICIDGFGGSGTLILAAERTNRVARVIELEPK 410

Query: 257 YIDIATKRIASV 268
           Y D+A +R   +
Sbjct: 411 YCDVAVRRWEEM 422


>gi|207725435|ref|YP_002255831.1| dna modification methylase protein [Ralstonia solanacearum MolK2]
 gi|206590671|emb|CAQ37633.1| dna modification methylase protein [Ralstonia solanacearum MolK2]
          Length = 422

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 93/247 (37%), Gaps = 30/247 (12%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +++ G++    S    L  +  D++F DPPYN+               A+ +       
Sbjct: 171 HRLLCGDATVAESYDRLLQGEPADMVFTDPPYNVNYANTAKDRLRGKSRAILNDNLGSGF 230

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           ++   A     +  CR      G  +V  S   +  +    +         I+W K    
Sbjct: 231 YDFLLAALTLLVANCR------GAHYVAMSSSELDVLQAAFREAGGHWSTFIIWAKDRFT 284

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
               G  +Q  +E +++       + +  + D           R+D              
Sbjct: 285 M--GGADYQRQYEPILYGWTEGARRHWCGDRDQGDVWQIKKPARND-------------- 328

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
                LHPT KP  L+ R + +S++PGD++LD F GSGT+   A+K  R    IE+   Y
Sbjct: 329 -----LHPTMKPLELVERAIRNSSRPGDVVLDAFGGSGTTLIAAEKAARVARLIELDPKY 383

Query: 258 IDIATKR 264
            D+  +R
Sbjct: 384 ADVIVRR 390


>gi|212702853|ref|ZP_03310981.1| hypothetical protein DESPIG_00885 [Desulfovibrio piger ATCC 29098]
 gi|212673715|gb|EEB34198.1| hypothetical protein DESPIG_00885 [Desulfovibrio piger ATCC 29098]
          Length = 454

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 59/308 (19%), Positives = 123/308 (39%), Gaps = 54/308 (17%)

Query: 21  DKIIKGNSI------SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
            +++ G++       ++++ +     D+++ DPPYN+   G+  +  +   DA++D    
Sbjct: 166 HRLLCGDATLPESYAALMQGME---ADMVWTDPPYNVAYEGKAGKIKN---DAMSD---- 215

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF--RIGTMLQNLNFWILNDIVWR 132
               + + AF +         ++  G ++V  +   +               + + ++WR
Sbjct: 216 ----QDFAAFLQRVFRQMVTGVRKGGAVYVAHADAGVLGVTFRQAFIQAGLKLASCLIWR 271

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ-MRSDWLIPICSG 191
           K++ + +     +Q  HE +++         +  +       +     +R D  +P    
Sbjct: 272 KNSGVLSRADYHWQ--HEPILYGWRPGAPHVWFGDRKQTTVQDAFPAAVREDGDVPCWHI 329

Query: 192 SE-----RLRNKD-----------------GEKLHPTQKPEALLSRILVSSTKPGDIILD 229
            +     R+  KD                     HPT KP AL+ R+L +S+K G +ILD
Sbjct: 330 MDGERIVRISGKDVHVEVLAGSVFCEPKPQRNSHHPTMKPVALIERMLTNSSKRGGMILD 389

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
           PF GSG++    ++  R    +E+   ++D+  +R          E  +  G R    VA
Sbjct: 390 PFGGSGSTLMACERQDRICRTMELDPRFVDVIIRRWEDAT---GREALLEDGVRPFVEVA 446

Query: 290 FNLLVERG 297
               +ERG
Sbjct: 447 ----LERG 450


>gi|153824598|ref|ZP_01977265.1| DNA methylase [Vibrio cholerae MZO-2]
 gi|149741816|gb|EDM55845.1| DNA methylase [Vibrio cholerae MZO-2]
          Length = 218

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 104/244 (42%), Gaps = 33/244 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV--DAVTDSWDKFSSFEA 80
           + + ++++ L  L A SVDL+  DPPY      +       L    A ++ W      + 
Sbjct: 3   LFQDDAVTWLSTLDAASVDLLITDPPYESLEKHRKIGTTTRLKVSKASSNQWFDIFPNDR 62

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           ++A     L    RVLK +   ++      +F I  + + + F     IVW K   +   
Sbjct: 63  FEAL----LCEVYRVLKNHSHFYLFCDQETMFVIKPIAEKIGFKFWKPIVWDK---VSIG 115

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G  ++  +E +++     +                      D  IP     + L +K  
Sbjct: 116 MGYHYRARYEYILFFEKGKRKLN-------------------DLSIP-----DILTHKRV 151

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            + +PT+KP +LL  ++  S++ G++++DPFFGSG++   A  L+R F G ++     + 
Sbjct: 152 YRGYPTEKPVSLLEVLVAQSSREGELVVDPFFGSGSTLVAANNLKRQFKGNDISSSAHEH 211

Query: 261 ATKR 264
             +R
Sbjct: 212 IRQR 215


>gi|298294253|ref|YP_003696192.1| DNA methylase N-4/N-6 domain protein [Starkeya novella DSM 506]
 gi|296930764|gb|ADH91573.1| DNA methylase N-4/N-6 domain protein [Starkeya novella DSM 506]
          Length = 480

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 61/251 (24%), Positives = 103/251 (41%), Gaps = 21/251 (8%)

Query: 21  DKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPD-HSLVDAVTDSWDKFS 76
             II G+S       E +  +   ++ +D PYN+ +NG +     H    A     D   
Sbjct: 199 HSIICGDSTDSGTFGELMGDERATVVSSDGPYNVAINGHVSSTGRHREFVAGVGEMDA-- 256

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             +A+ AF  ++L  C     P   ++    + ++  + +  +     + N  VW K + 
Sbjct: 257 --DAFTAFNASYLNNCLAYSVPGVLIYAFMDWRHMEEVLSAGRLAKLDLQNLCVWNKGSG 314

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
                G  +++ HE L++    P A             N        W  P  S   +  
Sbjct: 315 G---MGSFYRSQHE-LVFVFKEPSASHVNNVKLGKFGRNRTN----VWNYPGASSLRK-- 364

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                +LHPT KP AL++ I+  ++  GD++LDPF GSGT+   A    R    IE+   
Sbjct: 365 ---ELELHPTPKPVALVADIIRDASNRGDVVLDPFSGSGTTIIAAASTGRRARVIELDPH 421

Query: 257 YIDIATKRIAS 267
           Y+D+A +R   
Sbjct: 422 YVDVAVRRWEE 432


>gi|285019387|ref|YP_003377098.1| DNA modification methylase [Xanthomonas albilineans GPE PC73]
 gi|283474605|emb|CBA17104.1| putative dna modification methylase protein [Xanthomonas
           albilineans]
          Length = 418

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 57/286 (19%), Positives = 101/286 (35%), Gaps = 42/286 (14%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQL-NGQLYRPDHSLVDAVTDSWDKFS 76
            +++ G++       + L  +  D+ F DPPYN+   N    +  +     + D+     
Sbjct: 169 HRLLCGDATKADDYTQLLGDELPDMAFTDPPYNVNYANAAKDKASNKSRPILNDNLG--- 225

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E +  F     +      K  G +++  S   +  + +  +         I+W K+  
Sbjct: 226 --EGFGGFLTEACMNILGCTK--GAVYIAMSSSELDTLQSAFRAAGGHWSTFIIWAKNTF 281

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
                    Q  +E +++         +    D           ++D             
Sbjct: 282 TMGRADY--QRQYEPILYGWREGIDHFWCGARDQGDVWQIKKPHKND------------- 326

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                 LHPT KP  L+ R + +S+K  DI+LDPF GSG++    +K  R    IE+   
Sbjct: 327 ------LHPTMKPVELVERAVRNSSKTKDIVLDPFGGSGSTLIACEKCGRRARVIELDPK 380

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPG 302
           Y+D+  +R         I        R    V F   +E    QPG
Sbjct: 381 YVDVIVRRWQDYTGQAAI--------RASDGVKFGSTLEAE--QPG 416


>gi|253991419|ref|YP_003042775.1| hypothetical protein PAU_03946 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782869|emb|CAQ86034.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 417

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 61/261 (23%), Positives = 108/261 (41%), Gaps = 32/261 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            +  G+ +++ + + + +VD++FADPP+NL                     D     E Y
Sbjct: 117 TLYHGDCLNISKVIQSDTVDMVFADPPFNLDK-------------LYPSKMDDNLKEEEY 163

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +T  WL  C R+LKP G  ++        +I + L        + I     N MP   
Sbjct: 164 IKWTHRWLDECIRILKPGGAFFLWNLPVWNSKIASFLHG-RLNFKHWIAVDMKNNMPIQG 222

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW-------------LIPI 188
             R   +H +L++     KA  +  +   ++   +      D+             L  +
Sbjct: 223 --RLYPSHYSLLYFIKGEKANTFEPDRLPVQTCPKCFGDLKDYGGYKSKMNPLGINLTDV 280

Query: 189 CSGSERLRNKDGEKLHPT-QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                 +R+K  +K +   +    +L R++  STK GD+I DPF GSGT+  +A+   R 
Sbjct: 281 WYDIPPVRHKKYKKRNGANELSIKVLDRVIEMSTKEGDLIFDPFGGSGTTYVIAEIKNRK 340

Query: 248 FIGIEMKQDYIDIATKRIASV 268
           +IG E+     DI  +R  ++
Sbjct: 341 WIGSEIDN--CDIIKERFDNI 359


>gi|158423793|ref|YP_001525085.1| site-specific DNA-methyltransferase [Azorhizobium caulinodans ORS
           571]
 gi|158330682|dbj|BAF88167.1| site-specific DNA-methyltransferase [Azorhizobium caulinodans ORS
           571]
          Length = 315

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 56/258 (21%), Positives = 87/258 (33%), Gaps = 43/258 (16%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYN------------LQLNGQLYRPDHSLVDAVT 69
            +  G+++ +L  L   SV  +  DPPY+                 Q         +   
Sbjct: 85  TLYLGDALEILPTLAPGSVGAVLCDPPYSSGGASLSDRSRPTSAKYQSSEHRGLYPEFQG 144

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
           D+ D+ S    Y A++  WL   R +  P     V   +  +      LQ   +      
Sbjct: 145 DTRDQRS----YLAWSTLWLSRARMLAAPGALCAVFTDWRQLPVTSDALQCAGWVWRGVA 200

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
            W K+       GR    A   +   + +   KG                       P+ 
Sbjct: 201 PWDKTERGRPQLGRYRAQAEYVVWGTNGARPLKG-----------------------PVA 237

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
            G  R       K H   KP  L+  ++     P   ILDPF GSGT G    +    +I
Sbjct: 238 PGVFRAP-IPHVKHHIAGKPVELMEGLMSIMEGP---ILDPFMGSGTVGLACARKGLPYI 293

Query: 250 GIEMKQDYIDIATKRIAS 267
           GIE++  Y +IA  R+ +
Sbjct: 294 GIEVEPAYYEIALSRLEA 311


>gi|116486901|emb|CAH64694.1| DNA methylase [Wolbachia endosymbiont of Drosophila yakuba]
 gi|116486903|emb|CAH64695.1| DNA methylase [Wolbachia endosymbiont of Drosophila santomea]
          Length = 408

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 93/247 (37%), Gaps = 34/247 (13%)

Query: 21  DKIIKGNS--ISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +I  G+S  +   +  L  K  D+   DPPYN+       R D  +++           
Sbjct: 166 HRIYCGDSCVVESFKAVLDDKMADITVCDPPYNVDYGSSQEREDKKILNDNQG------- 218

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E Y+ F            K  G +++  S      +    +         I+W K++  
Sbjct: 219 -EKYELFLYDICSNILAYTK--GAIYICISSSEFSTLQKAFEEAGGKWSTFIIWAKNHFT 275

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                   Q  +E +++   S   + +          N+      D  I           
Sbjct: 276 LGRSDY--QRQYEAMLYGWKSGNKREW------HGGRNQSDLWFYDKPI----------- 316

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
                LHPT KP  L+ + +V+S++PGD +LDPF GSG++    ++  R    IE+   +
Sbjct: 317 --HNSLHPTMKPVELMEKAIVNSSRPGDTVLDPFSGSGSTLIACERTGRICRTIELDSKF 374

Query: 258 IDIATKR 264
           +D+  KR
Sbjct: 375 VDVTIKR 381


>gi|103487781|ref|YP_617342.1| DNA methylase N-4/N-6 [Sphingopyxis alaskensis RB2256]
 gi|98977858|gb|ABF54009.1| DNA methylase N-4/N-6 [Sphingopyxis alaskensis RB2256]
          Length = 287

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 57/292 (19%), Positives = 115/292 (39%), Gaps = 50/292 (17%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
             ++++ +  LP +S+ LI   PPYN+                   ++++ S    Y   
Sbjct: 19  CQDNLAFMRPLPDESMKLIVTSPPYNIGK-----------------AYEQRSPLAEYVKG 61

Query: 85  TRAWLLACRRVLKPNGTL-WVIGSYHNIFRI-------GTMLQNLNFWILNDIVWRKSNP 136
               +  C R+L   G+L W +G++ +   I         + +     + N ++W   + 
Sbjct: 62  QAQVISECVRLLSKGGSLCWQVGNHVDRGEIFPLDMVLYPIFKEHGLNLRNRVIWHFEHG 121

Query: 137 MPNFRGRRFQNAHETLIWASP----------------SPKAKGYTFNYDALKAANEDVQM 180
           +     +R    +ET++W +                  P  K +        + N   + 
Sbjct: 122 LHCS--KRLSGRYETILWFTKGDSYHFDVDPIRVPAKYPGKKHFKGPKAGQLSGNPLGKN 179

Query: 181 RSD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
             D W+ P         N   +  HP Q P  L+ R++++ T+PGD + DP+ G G+S  
Sbjct: 180 PGDVWIFPNVKS-----NHVEKTSHPCQFPVELVERLVLALTEPGDAVFDPYMGVGSSVV 234

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFN 291
            A    R   G ++  +Y+DIA  R+ +++  G ++   +     +P +   
Sbjct: 235 AAAMHDRIGYGCDVVSEYVDIAWHRVHALRA-GTLKTRPMNKPVYDPSLPKG 285


>gi|307826187|ref|ZP_07656398.1| DNA methylase N-4/N-6 domain protein [Methylobacter tundripaludum
           SV96]
 gi|307732826|gb|EFO03692.1| DNA methylase N-4/N-6 domain protein [Methylobacter tundripaludum
           SV96]
          Length = 308

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 67/315 (21%), Positives = 115/315 (36%), Gaps = 85/315 (26%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
            +   + +++L +LP  S+DLI  DPPY                    ++WD ++ S   
Sbjct: 10  TVHNTDCLTLLSQLPDNSIDLIATDPPY---------------YKVKGEAWDNQWQSKAD 54

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           + A+  + L+   RVLKP G+L++    H   ++   +    F +LN ++WRK +   N 
Sbjct: 55  FFAWLDSILVEYHRVLKPAGSLYLFAGPHLATQVDVAVSQ-RFNLLNHLIWRKPSGRHNG 113

Query: 141 RGR-----RFQNAHETLIW---ASPSPKAKGYTFNYDALK-----------------AAN 175
             +           E +++       P A     +Y                       +
Sbjct: 114 GNKELPAPLPYPQTEHILFAESRKKMPFAFESIRSYLDNARTAAGISRKQIDQACGCQMS 173

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKL-------------------------------- 203
                RS W  P  +  + +    G  L                                
Sbjct: 174 GHWFDRSQWTFPSLANYQTMDKLFGGTLKPYGQLKAEYKAIKQQRRHFAVTKHVHYTNVW 233

Query: 204 -----------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
                      HP +KP  L+  I+ +S+KP D++LD F GSG++    ++L R F+G E
Sbjct: 234 DFKPVQWYPGKHPCEKPLDLMRHIIEASSKPNDVVLDTFVGSGSTAIACRELGRGFVGCE 293

Query: 253 MKQDYIDIATKRIAS 267
           M +   D A  R+ S
Sbjct: 294 MGEAEFDGAVDRLTS 308


>gi|269976406|ref|ZP_06183391.1| DNA methylase [Mobiluncus mulieris 28-1]
 gi|269935207|gb|EEZ91756.1| DNA methylase [Mobiluncus mulieris 28-1]
          Length = 354

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 95/228 (41%), Gaps = 20/228 (8%)

Query: 51  LQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
           +   GQ Y+     V +  D       F  Y  F    L    RVLKP+GTL++   Y  
Sbjct: 126 VGFKGQSYKTIRGQVTSYNDE------FADYWGFLAPRLEEAWRVLKPSGTLYLHLDYRE 179

Query: 111 IFRIGTMLQNL--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN- 167
           +     +L  L      LN+I+W           RR+   H+ ++     P  K Y F+ 
Sbjct: 180 VHYAKVLLDALFGRECFLNEIIWAYDYGART--KRRWPAKHDNILVYVKDP--KQYYFDS 235

Query: 168 -------YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
                  Y A      +   R      +   +        +  + TQKPE +L RI+ +S
Sbjct: 236 ESVDREPYMAPGLVTAEKAARGKLPTDVWWHTIVSPTGKEKTGYATQKPEGILRRIVAAS 295

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           ++PGD  LD F GSGT+GAVA K+ R F+ ++     I +   R A+ 
Sbjct: 296 SRPGDWALDFFAGSGTTGAVAGKMGRHFVLVDENPQAIAVMRARFAAA 343



 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
          + +I G+++ VL  L  ++  LI+ DPP+N   
Sbjct: 34 NTVIHGDNLPVLRGLADETFQLIYIDPPFNTGK 66


>gi|189499041|ref|YP_001958511.1| DNA methylase N-4/N-6 domain-containing protein [Chlorobium
           phaeobacteroides BS1]
 gi|189494482|gb|ACE03030.1| DNA methylase N-4/N-6 domain protein [Chlorobium phaeobacteroides
           BS1]
          Length = 441

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 63/285 (22%), Positives = 104/285 (36%), Gaps = 47/285 (16%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           + S+      II+G+S   +  L  +S+ L+   PPY              L D  T+S 
Sbjct: 8   KKSVLTTHHTIIQGDSRQ-MNLLSDRSIHLVITSPPY------------WQLKDYGTESQ 54

Query: 73  DKF-SSFEAYDAFTRAWLLACRRVLKPNGTLW-VIGS------YHNIF-------RIGTM 117
             F  S+E+Y          C R L P   L   IG       Y+  +        I   
Sbjct: 55  IGFHESYESYINNLNLVWSECERALYPGCRLCVNIGDQFARSVYYGRYKVIPIRTEIIRF 114

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNA------------HETLIWASPSPKAKGYT 165
            + + F  +  ++W+K        G     +            +E ++       A   T
Sbjct: 115 CETIGFDYMGAVIWQKVTTTNTTGGASIMGSFSYPRNGILKLDYEFILIFKKLGDAPKPT 174

Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
                 K   E   M  +      SG         +  H    PE L  R++      GD
Sbjct: 175 ------KEQKERSAMTKEEWNTYFSGHWNFAGAK-QDGHIAMFPEELPRRLIKMFAFEGD 227

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
            +LDPF GSGT+   A+ L R+ +G E+  ++++I+ +++   QP
Sbjct: 228 TVLDPFMGSGTTNLAARNLGRNSVGYEINSEFVEISKQKLGVNQP 272


>gi|297587086|ref|ZP_06945731.1| DNA (cytosine-5-)-methyltransferase [Finegoldia magna ATCC 53516]
 gi|297575067|gb|EFH93786.1| DNA (cytosine-5-)-methyltransferase [Finegoldia magna ATCC 53516]
          Length = 416

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 102/269 (37%), Gaps = 31/269 (11%)

Query: 20  KDKIIKGNSI--SVLEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + K+I G+S      EKL  +  V+L+  D PY + L  +     +          D  +
Sbjct: 168 RHKVICGDSTLWDTFEKLLGETKVNLVCTDAPYFVDLKNKSGTIKN----------DNLN 217

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             EAY  F        +  +  + +++   +           ++  F +   ++W+K   
Sbjct: 218 DKEAY-EFLMKVFTNFKDAMAKDASIYEFYATMKARVFYDAFEDAGFKVGAGLIWKKPRA 276

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
            P  R     N    +       K   Y            D +  + +       SE+  
Sbjct: 277 -PFMRTDWKFNMEPIIFGWRKDGKHNWY-----------GDQKQTAVFEFDGIKDSEKEG 324

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                  HP+ KP  L++ ++  ST+   ++LD F GS ++    ++L R   GIE++  
Sbjct: 325 C-----GHPSSKPVPLIAYLIKQSTQTNGLVLDGFLGSASTLIACEELNRICYGIEIEPK 379

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTE 285
           ++D+A KR  ++         +  GK+ +
Sbjct: 380 FVDVAVKRYLNLVGSDEDISLLRDGKKYK 408


>gi|331686024|ref|ZP_08386594.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H299]
 gi|331076750|gb|EGI47978.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H299]
          Length = 189

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 89/229 (38%), Gaps = 43/229 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RSGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     +H I R     ++  F +   +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWHRIDRFMAAWKHAGFSVAGHLVFTKNYTSKSAY 107

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
              R + A+                          +    R    +P   G +      G
Sbjct: 108 VAYRHECAY-----------------------ILAKGSPARPRNPLPDVLGWKY----SG 140

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
            + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +I
Sbjct: 141 NRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYI 189


>gi|42520448|ref|NP_966363.1| prophage LambdaW4, DNA methylase [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42410187|gb|AAS14297.1| prophage LambdaW4, DNA methylase [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|116486893|emb|CAH64690.1| DNA methylase [Wolbachia endosymbiont of Drosophila melanogaster]
 gi|116486895|emb|CAH64691.1| DNA methylase [Wolbachia endosymbiont of Drosophila melanogaster]
          Length = 408

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 93/247 (37%), Gaps = 34/247 (13%)

Query: 21  DKIIKGNS--ISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +I  G+S  +   +  L  K  D+   DPPYN+       R D  +++           
Sbjct: 166 HRIYCGDSCVVESFKAVLDDKMADITVCDPPYNVDYGSSQEREDKKILNDNQG------- 218

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E Y+ F            K  G +++  S      +    +         I+W K++  
Sbjct: 219 -EKYELFLYDICSNILAYTK--GAIYICISSSEFSTLQKAFEEAGGKWSTFIIWAKNHFT 275

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                   Q  +E +++   S   + +          N+      D  I           
Sbjct: 276 LGRSDY--QRQYEAMLYGWKSGNKREW------HGGRNQSDLWFYDKPI----------- 316

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
                LHPT KP  L+ + +V+S++PGD +LDPF GSG++    ++  R    IE+   +
Sbjct: 317 --HNSLHPTMKPVELMEKAIVNSSRPGDTVLDPFSGSGSTLIACERTGRICRTIELDSKF 374

Query: 258 IDIATKR 264
           +D+  KR
Sbjct: 375 VDVTIKR 381


>gi|325661423|ref|ZP_08150049.1| hypothetical protein HMPREF0490_00783 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472372|gb|EGC75584.1| hypothetical protein HMPREF0490_00783 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 340

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 117/295 (39%), Gaps = 37/295 (12%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K+  I G+ +  L+K+  +SVDL+   PPY+   N ++Y  D   +           S+E
Sbjct: 4   KNTWINGDCLKELKKMDDESVDLVITSPPYH---NLRVYSNDPCDLSNC-------ESYE 53

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWV-IGSYHNIF-------------RIGTMLQNLNFWI 125
            Y       +  C RVLKP G   +    Y+                 I  +++  +  +
Sbjct: 54  EYYYLLGLVIAECSRVLKPGGKFVMQFEDYNYTIGRDNKMGQESLTGDIDRIMKEHDMSL 113

Query: 126 LNDIVWRKSNPMPNFRG-----RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
                WRK +             R   A +T++    +     Y +         +   +
Sbjct: 114 WTKAFWRKYSAQRAMLAQGNLYYRNMKARDTIL---AANVGFVYVYKKAGECELIKASDI 170

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
             +       G   + N      H T   E L+ R +   + PGD+ILDPF G+GT   V
Sbjct: 171 TLEEWADWADGVWNISNSGI--GHTTPFAEELVKRCIKLWSCPGDVILDPFAGAGTVNKV 228

Query: 241 AKKLRRSFIGIEMKQDYIDIA-TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLV 294
           A +  R+ IGIE+K+++ D+A  +R        ++  T  + ++ + R    LL+
Sbjct: 229 AIENNRNAIGIELKKEFYDLANVERFNKWD--DSVYETEDSIEKMKERFNEQLLI 281


>gi|218960490|ref|YP_001740265.1| DNA methylase N-4/N-6 [Candidatus Cloacamonas acidaminovorans]
 gi|167729147|emb|CAO80058.1| DNA methylase N-4/N-6 [Candidatus Cloacamonas acidaminovorans]
          Length = 430

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 71/303 (23%), Positives = 111/303 (36%), Gaps = 47/303 (15%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            +   KII G+S   +EK+  +SV LI   PPY              L D    +   F+
Sbjct: 2   MKTSHKIIIGDSR-CMEKVKDESVHLIVTSPPY------------WQLKDYGNHNQIGFN 48

Query: 77  S-FEAYDAFTRAWLLACRRVLKPNGTLW-VIGS------YHNIF-------RIGTMLQNL 121
             +E Y          C+RVL     L   IG       Y+  +        I    ++ 
Sbjct: 49  DTYEEYINNLNLVWNECKRVLHKGCRLCINIGDQFARSVYYGRYKVIPIRTEIIKFCESD 108

Query: 122 NFWILNDIVWRKSN------------PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
            F  +  I+W+K                P  R    +  +E ++          Y     
Sbjct: 109 GFDYMGAIIWQKVTTCHTTGGATIMGSFPYPRNGIIKLDYEYILIFKK------YGDPPS 162

Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
              A  E  ++  +      +G      +   K H    PE L  R++   +  GD ILD
Sbjct: 163 VQSALKEQSKLTIEEWNQYFTGHWNFSGEKQNK-HLAMFPEELPKRLIKMFSFVGDTILD 221

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
           PF GSGTS   A+ L R+ IG E+ ++Y+ I  +++   Q +   E T    K+ E  + 
Sbjct: 222 PFLGSGTSSLAARNLNRNSIGYEINENYLPIIKEKLDLEQGVIFQEETYEIIKQKELDIN 281

Query: 290 FNL 292
           F  
Sbjct: 282 FQE 284


>gi|17545564|ref|NP_518966.1| hypothetical protein RSc0845 [Ralstonia solanacearum GMI1000]
 gi|17427857|emb|CAD14547.1| putative dna modification methylase protein [Ralstonia solanacearum
           GMI1000]
          Length = 411

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 93/251 (37%), Gaps = 30/251 (11%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G++    +    L  +  D+ F DPPYN+               A+ +      
Sbjct: 170 RHRLLCGDATVAENYDRLLQGEPADMAFLDPPYNVNYANTAKDRQRGTSRAILNDNLGSG 229

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            ++   A     +  CR      G ++V  S   +  +    +         I+W K+  
Sbjct: 230 FYDFLLAALTPTIANCR------GGIYVAMSSSELDVLQAAFREAGGRWSTFIIWAKNTF 283

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
                    Q  +E +++       + +  + D           R+D             
Sbjct: 284 TLGRADY--QRQYEPILYGWAEGAQRHWCGDRDQGDVWQIKKPARND------------- 328

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                 LHPT KP  L+ R + +S++PGD++LD F GSGT+   A+K  R    IE+   
Sbjct: 329 ------LHPTMKPVELVERAIRNSSRPGDVVLDAFGGSGTTLIAAEKAARVARLIELDPK 382

Query: 257 YIDIATKRIAS 267
           Y D+  +R   
Sbjct: 383 YADVIVRRWEE 393


>gi|322379314|ref|ZP_08053692.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter suis
           HS1]
 gi|322380167|ref|ZP_08054405.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter suis
           HS5]
 gi|321147406|gb|EFX42068.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter suis
           HS5]
 gi|321148259|gb|EFX42781.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter suis
           HS1]
          Length = 254

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 99/260 (38%), Gaps = 26/260 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           + + +++  L  L  +S+D I   PPYN+ +                   D    ++ Y 
Sbjct: 12  LYQASALDYL-VLEEQSLDCIITSPPYNVGMAYNGS--------------DDSQDYQEYL 56

Query: 83  AFTRAWLLACRRVLKPNGTLWVI--------GSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            F+  +L  C    K +G L +         G       I ++ + + +   + I+W + 
Sbjct: 57  DFSAHYLANCYAWAKKSGRLCLNIPLDKNKGGQQSVGADIISLAKKMGWCYHSSIIWNEG 116

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N         + +A    + A        Y   +        D+    +  I   +G   
Sbjct: 117 NVSRRTAWGSWLSASAPYVIAPVELIVIFYKEVWKKQHKGVSDL--SKEEFIAWTNGLWS 174

Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
              +  +++ HP   P  L  R +   +  GD+I DPF GSGT+   A   +R+F+GIE+
Sbjct: 175 FNGESAKRIGHPAPFPRELPRRCIKLFSFIGDVICDPFSGSGTTMLEAYANQRNFVGIEL 234

Query: 254 KQDYIDIATKRIASVQPLGN 273
              Y +++ +R   +    N
Sbjct: 235 DPTYCELSKQRFLRMIEDAN 254


>gi|198284865|ref|YP_002221186.1| DNA methylase N-4/N-6 domain-containing protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218665780|ref|YP_002427548.1| type III restriction-modification system, Mod subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198249386|gb|ACH84979.1| DNA methylase N-4/N-6 domain protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218517993|gb|ACK78579.1| type III restriction-modification system, Mod subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 751

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 71/364 (19%), Positives = 139/364 (38%), Gaps = 70/364 (19%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVD----------LIFADPPYNLQ------- 52
           +     +  W +K+I G++  +L  L + ++           LI+ DPP+++        
Sbjct: 83  DPRGRQVRGWTNKLIWGDNKLILSSLKSGALRRQIEDAGGLKLIYIDPPFDVGADFSMDV 142

Query: 53  -LNGQLYRPDHSLVD--AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
            + G+ +  + +L++  A  D+W + +  +++ +     L+  R ++  +G+++V   + 
Sbjct: 143 EIGGETFHKEANLLEQIAYRDTWGRGA--DSFISMIYERLILMRDLMAEDGSIYVHCDWR 200

Query: 110 NIFRIGTMLQNLNFW--------ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
               +   L  +             N+I+W  S        + +   H T+++ S +   
Sbjct: 201 LASLVRIALDEVFGKGGDNEAPGFRNEIIWYFSQGGKGV--KHWARKHNTILYYSKTDSP 258

Query: 162 KGYTF----------------NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE---- 201
                                NY      +ED +   +          R    +G+    
Sbjct: 259 IFNQDAVRLPFTPHKQDEKGENYGGRMGVDEDGRRYVEKWGTGKKKLYRYYLDEGKLPED 318

Query: 202 ---------------KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                            +PTQKPEALL RI+ +S+K GD++ D F GSGT+ AVA+KL R
Sbjct: 319 VWTDIQSIQSAATERMDYPTQKPEALLERIIKASSKEGDLVADFFVGSGTTAAVAEKLGR 378

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILT 306
            +I  ++ +  I    KR+  VQ             R    +       +  +  G  L+
Sbjct: 379 KWIATDLGKFGIHTTRKRLIGVQREKKAAEQDF---RAFEVLNLGRYERQAYLNVGGRLS 435

Query: 307 NAQG 310
             Q 
Sbjct: 436 GEQK 439


>gi|256544782|ref|ZP_05472154.1| DNA methylase N-4/N-6 [Anaerococcus vaginalis ATCC 51170]
 gi|256399671|gb|EEU13276.1| DNA methylase N-4/N-6 [Anaerococcus vaginalis ATCC 51170]
          Length = 321

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 68/324 (20%), Positives = 116/324 (35%), Gaps = 90/324 (27%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + II  ++IS L++ P K  D     PPY      + Y+ +  +         +  S E
Sbjct: 9   TNYIINLDAISALKEFPDKIFDCCITSPPY---YGLRDYKAEGQI--------GREESPE 57

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHN----------------------------- 110
            Y           +RVLK  GTLWV+                                  
Sbjct: 58  EYLNKLIEVFREVKRVLKKEGTLWVVIGDSYAGTRSKKEYKDPKNIEGRSGQKEFITEKL 117

Query: 111 -----------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
                       +++   L+   +++ +DI+W K N MP     R   ++E +   S   
Sbjct: 118 SGYKAKDLMGIPWQLALKLREDGWYLRSDIIWHKENAMPESCRDRPSRSYEHIFLLSK-- 175

Query: 160 KAKGYTFNYDALKAANEDVQMRS---------------------------DWLIPICSGS 192
            A+ Y +N+DA+K   +++  +                            ++   I    
Sbjct: 176 -ARKYFYNFDAMKEPIKEISKKRYMRARGKDNKYLQEGTGAKRQSINEAREYGEYIGDNV 234

Query: 193 ERLRNKDG---------EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
            + RN            +  H    P  L+   + +      +I+DPF GSGT G VA +
Sbjct: 235 PKFRNNRDIWTINTSAFKGKHYAVFPPKLVELCIKAGCPKKGLIIDPFMGSGTVGMVAIR 294

Query: 244 LRRSFIGIEMKQDYIDIATKRIAS 267
           + R +IGI++ +DY  IA +RI  
Sbjct: 295 MDREYIGIDINKDYCQIAKERIEK 318


>gi|226944536|ref|YP_002799609.1| adinene-specific DNA-methyltransferase [Azotobacter vinelandii DJ]
 gi|226719463|gb|ACO78634.1| adinene-specific DNA-methyltransferase [Azotobacter vinelandii DJ]
          Length = 677

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 65/314 (20%), Positives = 118/314 (37%), Gaps = 64/314 (20%)

Query: 19  WKDKIIKGNSI------------SVLEKLPAKSVDLIFADPPYNLQLNGQLY-------- 58
           W++++I G+++            S +  L    +DLI+ DPP++ + + +          
Sbjct: 88  WRNRLIYGDNLLAMAALLAGDPPSGMPALRGG-IDLIYIDPPFDSRADYRTRVSLPGVEL 146

Query: 59  --RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
             RP      A  D+W   ++  +Y       L+  R +L  +G++ +         +  
Sbjct: 147 EQRPTVLEQFAYCDTWSDGTA--SYLEMLVPRLILMRELLSKSGSICIHIGMQVSHYVKA 204

Query: 117 MLQNLNFW--ILNDIVWRKSNPMP-NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
           +   +        +IVW    P      G +   AHE L+W + +     +   Y     
Sbjct: 205 VADEIFGKANFNTEIVWSYGTPSGGRAAGNKMVKAHEYLLWYAKNYGEHFHRKEYLPYSE 264

Query: 174 AN-EDVQMRSDWLIPICSGSER---------------------------------LRNKD 199
              ED     D         ER                                 ++ K+
Sbjct: 265 KYIEDRFTEVDGHGRRYRTREREKGCFERQYLDESKGVPLSTVWTDVKQLYAHHYIKRKN 324

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
            E  + TQKPEALL R++ S+     ++ D F GSGT+ AVA++L R +I  ++ +    
Sbjct: 325 EETGYDTQKPEALLERVINSACPENGLVADFFGGSGTTAAVAERLGRRWITSDLGKPACM 384

Query: 260 IATKRI--ASVQPL 271
           I  KR+   + +P 
Sbjct: 385 IMRKRLIDRNARPF 398


>gi|320449664|ref|YP_004201760.1| DNA methylase [Thermus scotoductus SA-01]
 gi|320149833|gb|ADW21211.1| DNA methylase [Thermus scotoductus SA-01]
          Length = 319

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 60/280 (21%), Positives = 96/280 (34%), Gaps = 49/280 (17%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G++  VL + P  SV L+   PPY               +    D   + +  E Y+AF 
Sbjct: 55  GDARKVLAEFPEASVHLVLTSPPYWT-------------LKRYEDVPGQMAHIEDYEAFL 101

Query: 86  RA---WLLACRRVLKPNGT-LWVIGS-------------YHNIFRIGTMLQNLNFWILND 128
                      R+L P G  + V+G              +     I    + L F  LN 
Sbjct: 102 DELDRVWREAFRLLVPGGRLIIVVGDVAVARRRFGRHLVFPLHADIQVRCRKLGFDNLNP 161

Query: 129 IVWRKSN-------------PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
           I+W K                 P   G   +   E ++        +  +         +
Sbjct: 162 ILWYKRTNASLEVEGRGVFLGKPYEPGAIIKTEVEYILMQRKPGGYRRPSPEAREKSRLS 221

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
           ++   R    I            +  +LHP   P  L  R++   +  GD +LDPF G+G
Sbjct: 222 KEDFHRFFRQI------WEDIPGESTRLHPAPFPLELAERLVRMFSFVGDTVLDPFAGTG 275

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           T+   A K  R  +G+E+   Y  +A +R A   P   +E
Sbjct: 276 TTLVAAAKWGRRALGVELVPGYAALARERFAREVPGEMLE 315


>gi|78189066|ref|YP_379404.1| DNA modification methylase-like [Chlorobium chlorochromatii CaD3]
 gi|78171265|gb|ABB28361.1| DNA modification methylase-like protein [Chlorobium chlorochromatii
           CaD3]
          Length = 413

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 64/296 (21%), Positives = 104/296 (35%), Gaps = 48/296 (16%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF-SSFEAYDAFTRAWLL 90
           + +L  +SV LI   PPY              L D  T++   F   +E Y         
Sbjct: 1   MNELQDESVHLIVTSPPY------------WQLKDYGTENQIGFHDDYETYINHLNLTWQ 48

Query: 91  ACRRVLKPNGTLWVIGSYH--------------NIFRIGTMLQNLNFWILNDIVWRKSNP 136
            C RVL     L +                       I    + + F  +  I+W+K+  
Sbjct: 49  ECYRVLHKGCRLCINIGDQFARSTYYGRYKIIPIHSEIIKFCEIIGFDFMGQIIWQKTTT 108

Query: 137 MPNFRGRRFQNAH------------ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
           M    G     ++            E ++       +   T      K   ++  M ++ 
Sbjct: 109 MNTSGGASIMGSYPNPRNGIVKLDFEYILLFKKQGTSPKPT------KEQKDNSVMTNEE 162

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
                +G         ++ H    PE L  RI+   + P + +LDPF GSGT+   A+ L
Sbjct: 163 WNTYFNGHWYFSGAKQDQ-HLAMFPEELPRRIIKMFSFPNETVLDPFMGSGTTALAARNL 221

Query: 245 RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
            R+ IG E+   +I I   +I        +E +V+  K+ E  + FN  V R   Q
Sbjct: 222 NRNSIGYEINPTFIPIIKNKIGMDDVFMKVETSVI--KQPEITIDFNECVNRLPYQ 275


>gi|148271668|ref|YP_001221229.1| putative adenine-specific DNA-modification methylase [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147829598|emb|CAN00513.1| putative adenine-specific DNA-modification methylase [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 348

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 97/226 (42%), Gaps = 20/226 (8%)

Query: 51  LQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
           L  +G+ Y     ++    D      SF  Y  F    L+   R+L P GTL++   Y  
Sbjct: 115 LGFHGRSYDSVKGMLYGFDD------SFADYWDFLEPRLIEAWRLLDPTGTLYLHLDYRE 168

Query: 111 IFRIGTMLQNL--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN- 167
           +     +L  L      LN+IVW           RR+   H+T++     P    Y F+ 
Sbjct: 169 VHYAKVVLDALFGRRSFLNEIVWAYDYGAK--SRRRWPAKHDTILVYVKDPV--RYRFDS 224

Query: 168 -------YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
                  Y A      + + R      +   +        +  + TQKP  +L RI+ +S
Sbjct: 225 EGVDREPYMAPGLVTPEKRERGKLPTDVWWHTIVSPTGREKTGYATQKPLGVLRRIVQAS 284

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           ++PGD +LD F GSGT+GA A++L R F+ ++     +++   R+A
Sbjct: 285 SRPGDWVLDFFAGSGTTGAAARELGRRFVLVDENPQAVEVMRARLA 330



 Score = 43.4 bits (101), Expect = 0.052,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
            +  D +I   ++  +  LP  +  LI+ DPP+N   
Sbjct: 7  TPDGPDLVIHAENLEAVRALPDGAFQLIYLDPPFNTGR 44


>gi|294012595|ref|YP_003546055.1| putative DNA modification methylase [Sphingobium japonicum UT26S]
 gi|292675925|dbj|BAI97443.1| putative DNA modification methylase [Sphingobium japonicum UT26S]
          Length = 443

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 102/257 (39%), Gaps = 13/257 (5%)

Query: 21  DKIIKGNSI--SVLEKLP-AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            ++I G+S    V EKL   +   ++F D PYN+ +NG +        D       + S 
Sbjct: 177 HRLICGDSTKGEVFEKLMGDELAQMVFTDAPYNVPVNGHICGLGKVQHDEFIMGAGEMSR 236

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E +  F    +             +    + ++  +    + +   + N +VW K N  
Sbjct: 237 AE-FTDFLARVMDNLAAYSVDGSIHYQCMDWRHMGEMLEAGERVYDSLRNLVVWNKDNGG 295

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
               G  +++ HE +        A    F     +         + W     +  +  RN
Sbjct: 296 ---MGTFYRSKHELIFVFRKGSAAHINNF-----ELGQHGRYRTNVWDYAGVNSLKADRN 347

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           ++   +HPT KP  +++  ++  ++ G I+LD F GSGT+   A++  R    +EM   Y
Sbjct: 348 EE-LAMHPTVKPVKMVADAMLDCSRHGGIVLDAFSGSGTTIIAAEQTGRLGRAVEMDPRY 406

Query: 258 IDIATKRIASVQPLGNI 274
           +D+A +R   +     I
Sbjct: 407 VDVAVRRWQKLTGQKAI 423


>gi|281357233|ref|ZP_06243722.1| DNA methylase N-4/N-6 domain protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281316264|gb|EFB00289.1| DNA methylase N-4/N-6 domain protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 409

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 99/263 (37%), Gaps = 34/263 (12%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
             ++ G+S     + + +  +  DL   DPPYN+ L G          + +T   D  S 
Sbjct: 167 HILLCGDSTVPDDIAKLMGDEQADLYLVDPPYNVALEGS---------NGLTIQNDNMSD 217

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            + +  F          VLKP    ++  S            + +  +   + W K+  +
Sbjct: 218 SK-FREFLTKAFSCAADVLKPGSAFYIFHSDSESCNFRLASGDTDLEVHQTLYWVKNAFV 276

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                  +Q+  E+ ++      A  +  +       N D    +D              
Sbjct: 277 LGRFDYHYQS--ESCLYGWKPGAAHRWYSDRCQTNILNFDKPKHND-------------- 320

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
                +HP+ KP  +L  ++ +S+K G+++LD F GSG++    ++  R    IE+ + Y
Sbjct: 321 -----VHPSMKPVDMLVYLIQNSSKRGELVLDNFGGSGSTLIACEQTGRKCRMIELDEKY 375

Query: 258 IDIATKRIASVQPLGNIELTVLT 280
           +D+  KR A        +   LT
Sbjct: 376 VDVIRKRWAEFTHGEGCDWESLT 398


>gi|304383755|ref|ZP_07366214.1| type II restriction-modification system methylation subunit
           [Prevotella marshii DSM 16973]
 gi|304335279|gb|EFM01550.1| type II restriction-modification system methylation subunit
           [Prevotella marshii DSM 16973]
          Length = 427

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 105/289 (36%), Gaps = 47/289 (16%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF-SSFE 79
             +I G+S + L  +P KSV LI   PPY              L D  +D    F  S+E
Sbjct: 7   HTLINGDSRN-LSLMPDKSVHLIITSPPY------------WQLKDYGSDGQIGFHDSYE 53

Query: 80  AYDAFTRAWLLACRRVLKPNGTLW-VIGS------YHNIF-------RIGTMLQNLNFWI 125
           +Y          C RVL     L   IG       Y+  +        I    + L    
Sbjct: 54  SYINNLNMVWAECNRVLHDGCRLCINIGDQFARSVYYGRYKVIPIRTEIIRFCEALGMDY 113

Query: 126 LNDIVWRKSNPM------------PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
           +  ++W+K   M            P  R    +  +E ++      KA        A++ 
Sbjct: 114 MGAVIWQKQTTMNTTGGGAVMGSFPYPRNGILKIDYEFILIFKKQGKAP-----VPAIEQ 168

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
                  + +W       S        +  H    PE L  R++   +  G+ + DPF G
Sbjct: 169 KQYSEMTKDEW--NTFFASHWNFGGAKQDGHIAVFPEELPHRLIKMFSFAGETVFDPFMG 226

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
           SGT+   A+ L+R+ IG E+  DY     +++AS    GN+E      +
Sbjct: 227 SGTTAFAARNLQRNSIGYEINPDYKKYYEEKVASSFSFGNVEYRYRNDR 275


>gi|290559357|gb|EFD92690.1| Site-specific DNA-methyltransferase [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 316

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 100/231 (43%), Gaps = 30/231 (12%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +K+  G+++ V+  LP++S+DLI+ DPP+    N  +   D + V    D WD       
Sbjct: 91  NKLYWGDNLHVMRTLPSESIDLIYIDPPFFSGRNYNMIFQDKNEVLTFEDIWDG--GLPT 148

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMP 138
           Y  +  A L+  +R+LKP G+++V   +H    +   +  +       N+I+W       
Sbjct: 149 YQIWLNARLVEMKRLLKPTGSIYVHLDWHASHYMKVEMDKIFGYDKFRNEIIWSYQRWTG 208

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE---------------------- 176
                +FQ  H+ +++ +   +  GYTFN      + +                      
Sbjct: 209 --ATDKFQRMHDVILFYTK--ETDGYTFNIQTEPYSEKSLHKARRTSIAERGKVISQSYT 264

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
           D + R   +  +   S           +PTQKPEALL RI+ +S+  GD++
Sbjct: 265 DDRSRQKSMRDVWDISYINSQAKERLGYPTQKPEALLERIIKASSNKGDVV 315


>gi|168702226|ref|ZP_02734503.1| adenine specific DNA methyltransferase, putative [Gemmata
           obscuriglobus UQM 2246]
          Length = 256

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 64/265 (24%), Positives = 100/265 (37%), Gaps = 41/265 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY------------NLQLNGQLYRPDHSLVDAVT 69
           +I++G S++VL  LP+++ DL+ ADPPY             ++   Q             
Sbjct: 13  RIVQGESLAVLVDLPSEAFDLVLADPPYSSGGFTRGDKISGVRKKYQQTGTRREYPAFAG 72

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
           D+ D+     AY  ++  WL  C R  +P     V   +  +      +Q   +     +
Sbjct: 73  DTRDQR----AYGYWSALWLAQCLRAARPGTICGVFADWRQLPVTVDAIQAGGWVYRGIV 128

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
            W K    P     RF ++ E L+W +  P+                             
Sbjct: 129 PWHKPGARPTQG--RFTSSCEYLVWGTKGPRPL----------------------EGAPL 164

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
            G   +  K  +K H T KP  LL R LV       ++LDPF GS TS   A    R  +
Sbjct: 165 PGFYSVGVKQADKHHLTGKPTELL-RELVKIAPASGLVLDPFAGSFTSAVAAALEGRRCL 223

Query: 250 GIEMKQDYIDIATKRIASVQPLGNI 274
            IE +  Y+ I  +R+A    L  +
Sbjct: 224 AIECEAPYVAIGRQRVADALGLAEV 248


>gi|154151876|ref|YP_001405494.1| DNA methylase N-4/N-6 domain-containing protein [Candidatus
           Methanoregula boonei 6A8]
 gi|154000428|gb|ABS56851.1| DNA methylase N-4/N-6 domain protein [Methanoregula boonei 6A8]
          Length = 334

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 59/294 (20%), Positives = 102/294 (34%), Gaps = 45/294 (15%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
              N +   E    + + + K++ G++   L  +  +SV LI   PPY            
Sbjct: 33  KNANLIKKIEAITRLVQTEHKLVLGDARD-LSSIDDESVHLIVTSPPYWSLKKYHES--- 88

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR-------- 113
                           +EA+          C R+L   G L V+     + R        
Sbjct: 89  -------DGQLGNIQDYEAFLPELDKVWAECYRILAKGGRLIVVVGDVCLSRKEAGRHLV 141

Query: 114 ------IGTMLQNLNFWILNDIVWRK--------SNPMPNFRGRRF------QNAHETLI 153
                 I    + + F  L+ I+W K        SN      G+ F      +N  E ++
Sbjct: 142 MPLHASIIESCRRIGFDNLSPIIWHKIANATFEVSNGGGGILGKPFEPNGVIKNDIEFIL 201

Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL 213
                   +    + +    +    +    W   I +       +D    HP   P  L 
Sbjct: 202 MQRKPGAYRK--PDTEKRLLSTISQENHKLWFRQIWTDIPGASTQD----HPAPYPVELS 255

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           +R++   +  GD +LDPF G+GT+   A    R+ IGIE+   Y++ A +R+  
Sbjct: 256 TRLIRMFSFVGDTVLDPFVGTGTTMLSAAATGRNSIGIEIDPRYLEYAYQRLRK 309


>gi|307943752|ref|ZP_07659096.1| DNA methylase [Roseibium sp. TrichSKD4]
 gi|307773382|gb|EFO32599.1| DNA methylase [Roseibium sp. TrichSKD4]
          Length = 373

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 70/346 (20%), Positives = 105/346 (30%), Gaps = 107/346 (30%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           E K  +  G+ + +L  LP +SVD +   PPY    +             V        +
Sbjct: 9   EGKVALHVGDVLEMLATLPDESVDCVVTSPPYWGLRDY-----------GVEGQIGLEPT 57

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVI--------------------GSYHNIFR---- 113
              + A   A     RRVLKP GTLW+                     G+ +  FR    
Sbjct: 58  LAEHIALMVAVFEEVRRVLKPTGTLWLNYGDCYASSPNGRSAADTKAEGNDNRTFRDKPF 117

Query: 114 ------------------IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI-- 153
                             +   LQ   +W+ ++I+W K NPMP     R   AHE +   
Sbjct: 118 STVQGVLKPKDLCMIPNRLAIALQEAGWWVRSEIIWAKPNPMPESIRDRPATAHEKIFLL 177

Query: 154 ---------------------------WASPSPKAKGYTFN------------------- 167
                                      WAS          N                   
Sbjct: 178 SKSAKYFYDANAVRQGQHKVSKHTVAGWASGPGAHDTIKHNRGSRSKDTNSSASPPNSRP 237

Query: 168 -----YDALKAANEDVQMRSDWL-IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
                ++A   A+   +   +W          ++        H    P AL  R + +  
Sbjct: 238 HSLSEFEARHNADYPGRNLRNWEPEAAQPDVWKIATSPFPGAHFATFPLALAQRCVKAGC 297

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
             G ++LDPF G+GT+   A         IE+  +Y  IA +RI  
Sbjct: 298 PKGGVVLDPFGGAGTTAIAALAHGCQAQLIEINPEYARIAGERIEQ 343


>gi|86741041|ref|YP_481441.1| DNA methylase N-4/N-6 [Frankia sp. CcI3]
 gi|86567903|gb|ABD11712.1| DNA methylase N-4/N-6 [Frankia sp. CcI3]
          Length = 330

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 72/325 (22%), Positives = 112/325 (34%), Gaps = 87/325 (26%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G +  VL  LP  SV  +   PPY    +                      +  AY A  
Sbjct: 20  GQAAQVLRGLPDASVHCVVTSPPYFGLRDY-----------GEPGQIGLEPTPAAYVARL 68

Query: 86  RAWLLACRRVLKPNGTLW-VIGSYH----------------------------------- 109
                  RRVL P+GT W  +G  +                                   
Sbjct: 69  AEVFTEVRRVLHPDGTCWLNLGDSYAGKANGGPSVGLTRRADRAELIPPRRNTTAAAPYK 128

Query: 110 ----NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
                 +R+   LQ+  + + N IVW K+N MP     RF +  ETL   +    +  Y 
Sbjct: 129 SLLGIPWRVAFALQDAGWTVRNAIVWAKTNAMPESVTDRFASRTETLFLLTR---SARYH 185

Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK----------------------- 202
           F+ D ++    D    ++W      G    R ++ E                        
Sbjct: 186 FDLDPVRETPVDPTGGAEWAQRRKQGVPGRRGRNPESSVTAADRDFAAHQAGRNPGDVWQ 245

Query: 203 --------LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                    H    P  +  R +++   PG ++LDPF GS T+G VA +L R ++GI++ 
Sbjct: 246 IPVANFPGAHFAVFPPEIPRRAILTGCPPGGVVLDPFSGSATTGMVALQLGRRYVGIDLN 305

Query: 255 QDYIDIATK-RIASVQPLGNIELTV 278
            DY  +A + R+   +PL  I+   
Sbjct: 306 PDYHRLALRTRLLE-RPLPGIDQPA 329


>gi|206889827|ref|YP_002248296.1| DNA methylase [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741765|gb|ACI20822.1| DNA methylase [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 283

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 114/294 (38%), Gaps = 41/294 (13%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            K+I G++ S ++++  +SV L+   PPY                +A  D    F S+EA
Sbjct: 5   HKLIIGDATS-MKEIEDESVHLMITSPPYF---------------NAPFDYKGLFKSYEA 48

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGS--------YHNIFRIGTMLQNLNFWILNDIVWR 132
           Y    +       RVLK      +           +  +  +  + Q+  F   + I+W+
Sbjct: 49  YFEMIQKVAEETYRVLKKGRVAVINIDDMLIDGEKFTIVADVTKIFQSAGFKYRDRIIWK 108

Query: 133 KSNPMPNFRGRRF---QNAHETLIWASP----SPKAKGYTFNYDALKA-------ANEDV 178
           K +       R     QN +    +           +   FNY ++          ++  
Sbjct: 109 KPDGYLRISRRSGVLLQNPYPMYFYPDNLLESILIFQKGKFNYSSVPKDLKEESKIDKKE 168

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
            + + W   +      L N   EK      PE L  RI+   +  G+ +LDPF GSGT+ 
Sbjct: 169 FLENKWYSTLWEMVNVLPNSSLEKD-IAAFPEELPYRIIKLFSYIGETVLDPFAGSGTTM 227

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRI--ASVQPLGNIELTVLTGKRTEPRVAF 290
            VA+KL R+ IGIE+ +  + +  K++       LG     +    R E +V +
Sbjct: 228 KVARKLGRNSIGIEINKSLLSVIKKKLGFEGQLSLGEHGDRLEIIIREEEKVEY 281


>gi|315453087|ref|YP_004073357.1| adenine specific DNA methyltransferase [Helicobacter felis ATCC
           49179]
 gi|315132139|emb|CBY82767.1| adenine specific DNA methyltransferase [Helicobacter felis ATCC
           49179]
          Length = 255

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 52/256 (20%), Positives = 99/256 (38%), Gaps = 26/256 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++ + ++++    LP + +D I   PPYN+ +     +                 S++ Y
Sbjct: 13  RLYQASALNS-ALLPQECLDCIITSPPYNVGIAYNASQ--------------DAQSYQEY 57

Query: 82  DAFTRAWLLACRRVLKPNGTLWVI--------GSYHNIFRIGTMLQNLNFWILNDIVWRK 133
             F+  WL    +  K +G L +         G+      + T+ + + +   + IVW +
Sbjct: 58  LDFSACWLENVYQWTKTSGRLCLNIPLDKNKGGAQSVGADLITLAKKVGWSYHSSIVWNE 117

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
            N         + +A    + A        Y   +        D+    +  +   +G  
Sbjct: 118 GNISRRTAWGSWLSASAPYVIAPVELIVILYKQVWKKPFKGVSDI--SKEEFMAWTNGLW 175

Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
               +  +++ HP   P  L  R +   +  GD I DPF GSGT+   A   +R+FIGIE
Sbjct: 176 SFNGESKKRIGHPAPFPRELPRRCIKLFSFVGDTICDPFSGSGTTMIEAHLNQRAFIGIE 235

Query: 253 MKQDYIDIATKRIASV 268
           +   Y  ++ +R   V
Sbjct: 236 LDPTYCALSYERFLKV 251


>gi|162145944|ref|YP_001600402.1| DNA methylase N-4/N-6 [Gluconacetobacter diazotrophicus PAl 5]
 gi|161784518|emb|CAP54051.1| putative DNA methylase N-4/N-6 [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 247

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 94/251 (37%), Gaps = 44/251 (17%)

Query: 41  DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG 100
           D+I  DPPY           D SL               A+D     W       LKP+G
Sbjct: 19  DMILVDPPYG----------DTSL---------------AWDRCVPDWPGKALAALKPSG 53

Query: 101 TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
           +LWV GS  +        +N  +    ++VW K N    F   RF+  HE L+       
Sbjct: 54  SLWVFGSLRSFLASSAAFRNAGWKYAQELVWEKQNGSS-FHADRFRRVHELLVQFYRDDT 112

Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIP------------------ICSGSERLRNKDGEK 202
                +N            +R     P                  +      +RN  G  
Sbjct: 113 PWRAVYNSVPTTPDARARTVRRKHRPPHMGQIDAGHYVSEDGGPRLMRSVIPVRNAHGRA 172

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +HPT+KP ALL  ++ +S  PG ++ D F GSG +G   +   R ++G E+       A 
Sbjct: 173 IHPTEKPVALLEILIRTSCPPGGLVGDWFAGSGAAGVACRLAGRRYVGCEIDPVMAQKAR 232

Query: 263 KRIASVQPLGN 273
            RIASV PLG 
Sbjct: 233 DRIASVLPLGE 243


>gi|218781601|ref|YP_002432919.1| DNA methylase N-4/N-6 domain protein [Desulfatibacillum
           alkenivorans AK-01]
 gi|218762985|gb|ACL05451.1| DNA methylase N-4/N-6 domain protein [Desulfatibacillum
           alkenivorans AK-01]
          Length = 394

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 63/293 (21%), Positives = 111/293 (37%), Gaps = 33/293 (11%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            ++I G+S + ++++  +S+DL+   PPY  +Q+   ++      +  + +      ++E
Sbjct: 10  HQMIHGDS-TAMKEIKDQSIDLVVTSPPYPMIQMWDAIFSAQDQEIGNLLERGYGLKAYE 68

Query: 80  AYDAFTRAWLLACRRVLKPNGTLW-VIGS-----------YHNIFRIGTMLQNLNFWILN 127
                       C RV+K    L   IG            Y N  RI + L +L F IL 
Sbjct: 69  RMHDILDKVWAECFRVMKSGAILCINIGDATRSIDGEFSLYPNHARILSSLTDLGFSILP 128

Query: 128 DIVWRKSNPMPN--------FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
           +I+WRK    PN          G      HE ++ A    K +         + +    +
Sbjct: 129 EILWRKQTNAPNKFMGSGMLPGGAYVTLEHEFILVARKGGKREFKGVEKQNRQNSAYFWE 188

Query: 180 MRSDWLIPIC---SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
            R+ W   +     G+ +   +   +      P  L  R++   +  GD +LDPF G GT
Sbjct: 189 ERNTWFSDVWMDLKGARQEIGEKNLRERSAAFPFELPFRLINMYSAKGDAVLDPFGGLGT 248

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
           +   A    R+    E  ++        ++ V        T    KR E R+A
Sbjct: 249 TILAAMACGRNSRAYEQDEE--------LSRVFSPEASNFTGFANKRQEERLA 293


>gi|299541742|ref|ZP_07052070.1| Phage protein, DNA methylase [Lysinibacillus fusiformis ZC1]
 gi|298725737|gb|EFI66373.1| Phage protein, DNA methylase [Lysinibacillus fusiformis ZC1]
          Length = 232

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 57/253 (22%), Positives = 89/253 (35%), Gaps = 39/253 (15%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K+ I   + +  ++ +P KSVDLI  D PY                   T  WD    FE
Sbjct: 5   KNTIYNMDCLEGMQYIPDKSVDLILTDLPYGT----------------TTCRWDTIIPFE 48

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI--VWRKSNPM 137
                         RV+K NG + +  S    F    ++ NL  +    I    + +   
Sbjct: 49  LLWE-------QYERVIKDNGAIVLTAS--QPFTSKLIMSNLKLFRYEWIWKKGKHTTGF 99

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK------------AANEDVQMRSDWL 185
           PN      +N     ++    P        Y                  NE +       
Sbjct: 100 PNANKMPLKNHENVCVFYKKLPTYNPQGVIYCKPVLIKNSPKMKILGDRNETLSKPHIVK 159

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
                 S     +D +  HPTQKP +L   ++++ T PGD +LD   G+ T+       +
Sbjct: 160 RKNYPKSVIDFPRDSKTWHPTQKPLSLFEYLILTYTNPGDTVLDNCMGAFTTAVACDNTK 219

Query: 246 RSFIGIEMKQDYI 258
           RS+IG E+  +Y 
Sbjct: 220 RSWIGFELDSEYC 232


>gi|296115409|ref|ZP_06834044.1| putative DNA methylase N-4/N-6 [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978048|gb|EFG84791.1| putative DNA methylase N-4/N-6 [Gluconacetobacter hansenii ATCC
           23769]
          Length = 247

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 62/251 (24%), Positives = 95/251 (37%), Gaps = 44/251 (17%)

Query: 41  DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG 100
           D+I  DPPY                   + +WD+  +          W       LKP+G
Sbjct: 19  DMILVDPPYG----------------DTSLAWDRRVA---------DWPGKALAALKPSG 53

Query: 101 TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
           +LWV GS  +        +N  +    ++VW K N    F   RF+  HE ++       
Sbjct: 54  SLWVFGSLRSFLASNAAFRNAGWKYAQELVWEKQNGSS-FHADRFRRVHELIVQFYRDDT 112

Query: 161 AKGYTFN------------------YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
                +N                     +   +    +  D    +      +RN  G  
Sbjct: 113 PWRAVYNVVPTTSDARARTVRRRHRPPHMGRIDAGHYVSEDGGPRLMRSVIPVRNAHGRA 172

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +HPT+KP ALL  ++ +S  PG ++ D F GSG +G   +   R ++G E+       A 
Sbjct: 173 IHPTEKPVALLEILIRTSCPPGGLVGDWFAGSGAAGVACRLAGRRYVGCEIDPVMAQKAR 232

Query: 263 KRIASVQPLGN 273
            RIASV PLG 
Sbjct: 233 DRIASVLPLGE 243


>gi|19908852|gb|AAM03022.1|AF472611_3 M.BcnIB [Brevibacillus centrosporus]
          Length = 317

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 62/295 (21%), Positives = 107/295 (36%), Gaps = 54/295 (18%)

Query: 27  NSISVLEKLPAKSVDLIFADPPY------------------------------------- 49
           +   +L K+P +S+DL+   PPY                                     
Sbjct: 18  DCREILRKIPKESIDLLVTSPPYWAKRVYNEDEEGELGSEPTPEEFVKVLADYFDIFRPY 77

Query: 50  -------NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL 102
                   + +    +       +   D     +SF+         L   +  LK +G L
Sbjct: 78  IKKEGNLFVNIGDTFFGSGAGAWNKYLDEEGNTTSFQKERKEKYFTLKPLQPKLKQDGKL 137

Query: 103 WVIGSYHNIF-RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
           +       I  R    +Q+  + + +DI+WRK N +P     RF N +E +       +A
Sbjct: 138 YQNKQLLLIPSRFAIEMQSRGWILRDDIIWRKPNRIPASVKDRFNNTYEHVFHFV---QA 194

Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
           K Y F+ D++K       M ++  +        +  +     H    PEAL+   +   +
Sbjct: 195 KKYYFDLDSVK------IMGANGKLKNPGDVWDINTQPLRGSHTATFPEALVDICIKCGS 248

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
               ++ DPF G+GTS  VA++L R FIG E+  ++   + KR        N E 
Sbjct: 249 PKNGLVFDPFMGTGTSWIVARRLNRRFIGSEINPEFYQFSIKRFLESLSERNKEH 303


>gi|207092627|ref|ZP_03240414.1| adenine-specific DNA methylase [Helicobacter pylori HPKX_438_AG0C1]
          Length = 680

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 76/288 (26%), Positives = 116/288 (40%), Gaps = 47/288 (16%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
           +N  S  E    +IK  +   L  L     +S+D I+ DPP+N          D + +D 
Sbjct: 296 KNLFSEDEINGTLIKSENYQALNSLKNRYKESIDCIYIDPPFNTG-------SDFAYIDK 348

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--I 125
             DS         + +     L      L P G+ ++    +  +    +L ++      
Sbjct: 349 FQDS--------TWLSLIHNRLELAYDFLSPQGSFYLHLDNNANYLGRMLLNDIFGKENF 400

Query: 126 LNDIVWRKSNPMPNFRGRRFQN---------AHETLIWASPSPKA-------------KG 163
            N+I+W  SN M N      +N           E + +    P++             K 
Sbjct: 401 RNEIIWYYSNKMANSGNSFAKNTETILNYSKNEEYIFYRQKEPRSEPVLLSKREGRDGKN 460

Query: 164 YTFNYDALKAANEDVQMRSD---WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
                +  K   E    R     W IPI   +   R K+ E L  TQKPE LL RI+ +S
Sbjct: 461 MRARDEYGKVIYELSHERYVDTLWNIPIIGSTSTERVKNNENL--TQKPEKLLERIIQAS 518

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +    I+LD F GSGT+ AVA KL+R +IGIEM + +  +   R+  V
Sbjct: 519 SDENSIVLDFFAGSGTTCAVAHKLKRKYIGIEMGEHFDSVILPRLKKV 566


>gi|220905504|ref|YP_002480816.1| DNA methylase N-4/N-6 domain-containing protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869803|gb|ACL50138.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 285

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 62/257 (24%), Positives = 102/257 (39%), Gaps = 31/257 (12%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           ++G+ I++L+ + + SVD  FADPP+NL     +   D+         +DK      Y  
Sbjct: 29  LEGDCINILKNIKSNSVDTFFADPPFNLNKKYGVKSNDNK--------YDK-----EYIE 75

Query: 84  FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
           +  +W+    R+LKP G  ++         +G+ L +      + I       +P    +
Sbjct: 76  WCYSWISEGIRILKPGGAFFIYNLPKWNMILGSYLTSAGLLFRHWIAVSMKLSLPIP--K 133

Query: 144 RFQNAHETLIWASP---SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE------- 193
           R   AH +L++ +        K  T          E             +G         
Sbjct: 134 RLYPAHYSLLYFTKGAPKTFNKIRTPIELCRHCGKEIKDYGGHRKSMNPNGVNLSDVWND 193

Query: 194 ----RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
               R       K    Q    LL RI++ +T  GDI++DPF G GT+ AV +   R +I
Sbjct: 194 IAPVRHHKFKHNKRTENQLSTKLLERIILMTTNEGDIVVDPFGGGGTTFAVCEAKLRRWI 253

Query: 250 GIEMKQDYIDIATKRIA 266
           GIE++   I    +RI 
Sbjct: 254 GIEIED--ITPIKERIE 268


>gi|16273302|ref|NP_439546.1| modification methylase [Haemophilus influenzae Rd KW20]
 gi|1574226|gb|AAC23039.1| modification methylase (hindIIIM) [Haemophilus influenzae Rd KW20]
          Length = 309

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 62/294 (21%), Positives = 102/294 (34%), Gaps = 48/294 (16%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ--LYRPDHSLVDAVTDSWDKFSSF 78
           D I   +SI  ++KL + S+  I +D PY +  +    L+   +S +   + +  K S F
Sbjct: 3   DCIYNSDSIXEIKKLDSNSIHAIISDIPYGIDYDDWDILHSNTNSALGGTSSAQHKTSLF 62

Query: 79  ------------------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
                             + Y  +  +W     RVLK   +++V        R+    +N
Sbjct: 63  KRRGKPLNGWSEADKKRPQEYQEWVESWSNEWFRVLKSGSSVFVFAGRQFAHRVVVAFEN 122

Query: 121 LNFWILNDIVWRKSNP-------------------MPNFRGRRFQNAH---ETLIWASPS 158
             F   + + W K                         + G R  N     E ++W    
Sbjct: 123 SGFTFKDMLSWEKDKAPHRAQRISCVFERRGDIANTNKWVGWRVANLRPLFEPILWFQKP 182

Query: 159 PKA------KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
            K               A    +          +   +  +     + +  H  QKP  L
Sbjct: 183 YKTGSTLADNLIKHEVGAWNENSLTHWNIQQGALNHSNILKVRITSEDKGYHVAQKPLNL 242

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           +  ++   TK   I+LDPF GSGT+   AK+L R FIG E      +IA  R+ 
Sbjct: 243 MKLLIDLVTKEEQIVLDPFAGSGTTLLAAKELNRHFIGYEKNNGIYNIAVNRLG 296


>gi|209885571|ref|YP_002289428.1| DNA methylase [Oligotropha carboxidovorans OM5]
 gi|209873767|gb|ACI93563.1| DNA methylase [Oligotropha carboxidovorans OM5]
          Length = 252

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 63/269 (23%), Positives = 95/269 (35%), Gaps = 46/269 (17%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +I G+   ++   P    DLI ADPPY                   + +WD+        
Sbjct: 8   VIVGDCRVLMP--PRGPFDLILADPPYG----------------DTSLAWDRRVD----- 44

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
                WL      LKP+G+LW  GS            +       +IVW K N    F  
Sbjct: 45  ----GWLRLACDALKPSGSLWGFGSLRCFMATANQFADAGLRYAQEIVWEKQNGTS-FHA 99

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP--------------- 187
            RF+  HE +     +       +N            +R     P               
Sbjct: 100 DRFKRVHELVAQFYRADAPWSAVYNDVQTTPDATARTVRRKMRPPHTGHIDVGHYVSEDG 159

Query: 188 ---ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
              +       RN  G  +H T+KP  L+  ++ +S   G ++ D F GSG +G   +  
Sbjct: 160 GPRLMRSVIYARNCHGTAIHSTEKPSGLIEILIRTSCPQGGLVGDWFAGSGAAGEACRLA 219

Query: 245 RRSFIGIEMKQDYIDIATKRIASVQPLGN 273
            R ++G E+     ++A  RIASV PL  
Sbjct: 220 GRRYLGCEIDAGMAELARARIASVLPLAE 248


>gi|170780698|ref|YP_001709030.1| putative DNA methylase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169155266|emb|CAQ00367.1| putative DNA methylase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 334

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 96/225 (42%), Gaps = 20/225 (8%)

Query: 51  LQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
           L  +G+ Y     ++    D      SF  Y  F    L+   R+L P GTL++   Y  
Sbjct: 103 LGFHGRSYNSVKGMLYGFDD------SFADYWDFLEPRLIEAWRLLDPTGTLYLHLDYRE 156

Query: 111 IFRIGTMLQNL--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN- 167
           +     +L  L      LN+IVW           RR+   H+T++     P    Y F+ 
Sbjct: 157 VHYAKVVLDALFGRRSFLNEIVWAYDYGAK--SRRRWPAKHDTILVYVKDPL--RYRFDS 212

Query: 168 -------YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
                  Y A      + + R      +   +        +  + TQKP  +L RI+ +S
Sbjct: 213 EGVDREPYMAPGLVTPEKRERGKLPTDVWWHTIVSPTGREKTGYATQKPLGVLRRIVQAS 272

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           ++PGD +LD F GSGT+GA A++L R F+ ++     +++   R+
Sbjct: 273 SRPGDWVLDFFAGSGTTGAAARELGRRFVLVDENPQAVEVMRARL 317



 Score = 41.1 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
          I   ++  +  LP  +  LI+ DPP+N   
Sbjct: 2  IHAENLQAVRALPDGAFQLIYLDPPFNTGR 31


>gi|224438686|ref|ZP_03659576.1| putative methyltransferase [Helicobacter cinaedi CCUG 18818]
 gi|313145068|ref|ZP_07807261.1| modification methylase HpaI [Helicobacter cinaedi CCUG 18818]
 gi|313130099|gb|EFR47716.1| modification methylase HpaI [Helicobacter cinaedi CCUG 18818]
          Length = 276

 Score =  135 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 59/259 (22%), Positives = 106/259 (40%), Gaps = 24/259 (9%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            EW +KI   +++ +L+ LP + +D+I++DP YN+ +N    +         T  W    
Sbjct: 1   MEW-NKIYNDDTLKILKSLPNECLDMIWSDPDYNVGINYNGSK--------YTQKW---- 47

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E Y ++       C RVLKP+G L+++        +     +   + +++ VW  +  
Sbjct: 48  --EDYISWYCELATQCLRVLKPSGNLFLMNYPKQNAYLRVKCLDSLAYDVSEYVWVYNTN 105

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ------MRSDWLIPICS 190
           + +   RR   AH ++I A+ S     Y  N         D +            +P   
Sbjct: 106 VGHS-KRRLTTAHRSIIHATKSKNNHFYKDNIALPYQNPTDKRILQRLADGHKGRMPYSW 164

Query: 191 GSERLRN--KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
               L       +  H  Q P  L+   + S T  GD +   F GSG    + + L+R +
Sbjct: 165 FYFDLVKNVSKDKTFHSCQIPAPLVEMFIKSCTNEGDSVFVLFGGSGGEILLCENLKRKW 224

Query: 249 IGIEMKQDYIDIATKRIAS 267
           I  E+ + Y ++   R+ S
Sbjct: 225 ISCELHKPYFEMINDRLQS 243


>gi|254454493|ref|ZP_05067930.1| DNA methylase N-4/N-6 [Octadecabacter antarcticus 238]
 gi|198268899|gb|EDY93169.1| DNA methylase N-4/N-6 [Octadecabacter antarcticus 238]
          Length = 425

 Score =  135 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 62/252 (24%), Positives = 110/252 (43%), Gaps = 16/252 (6%)

Query: 21  DKIIKGNS--ISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            +I  G+   +  L+++      VD  F DPPYN++++G           A+        
Sbjct: 172 HRIGCGDGRDLDFLKEVVGQGALVDAAFLDPPYNVKISGHANAKGRHREFAMAS---GEM 228

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           + +A+  F    L  C  V +     +V   + +I  +      +    LN  VW KSN 
Sbjct: 229 TQQAFVQFLEETLGPCAAVSRSGAVHFVCMDWRHIDELSQAGSTVYDSRLNICVWNKSNA 288

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
                G  +++ HE +          G   + + ++         + W     +     R
Sbjct: 289 G---MGSLYRSKHELIFVYRV-----GAEQHLNNVELGKHGRNRTNVWNYASVNSLAGSR 340

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           ++D   LHPT KP A+++  +   TK GDI+LD F GSGT+   ++++ R F GIE+   
Sbjct: 341 SED-LALHPTVKPTAMVADAIQDVTKRGDIVLDIFLGSGTTLIASERVGRKFRGIELDPG 399

Query: 257 YIDIATKRIASV 268
           Y+D+A +R  ++
Sbjct: 400 YVDVAIERWRAM 411


>gi|23752321|ref|NP_705636.1| gp10 [Burkholderia phage Bcep781]
 gi|23507188|gb|AAN38011.1| gp10 [Burkholderia phage Bcep781]
          Length = 262

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 63/270 (23%), Positives = 98/270 (36%), Gaps = 50/270 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++  G+ + ++  LP  SVD++  D PY                     +WD    F+A 
Sbjct: 10  ELYWGDCLDLMRLLPDASVDMVMCDLPYGT----------------TACAWDSVLPFDAL 53

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN-F 140
            A         RR++K  G + +  +         ++ +   W   D VW K+ P     
Sbjct: 54  WA-------QYRRIVKSRGAVVLTAA---QPFTSALVASNFEWFKYDWVWAKNRPTNFAH 103

Query: 141 RGRRFQNAHETLIWASP----------------------SPKAKGYTFNYDALKAANEDV 178
              +    HE+++  SP                          K  T+N DA+ +     
Sbjct: 104 AKNKPMPKHESVLVFSPGTTVHASQSKLRMTYNPQGLTRIEPRKMKTYNTDAMFSKRGSH 163

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
              +                D   LHPT KP AL+  ++ + T  GD +LD   GSGT+G
Sbjct: 164 GEYTQEFTNYPHSLLEFST-DQLNLHPTAKPVALMEYLIRTYTSEGDTVLDNCMGSGTTG 222

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
                  R FIG+E   DY  IAT R+   
Sbjct: 223 VACINTGRRFIGMEKDADYALIATGRMREA 252


>gi|153870157|ref|ZP_01999614.1| type II DNA modification enzyme [Beggiatoa sp. PS]
 gi|152073377|gb|EDN70386.1| type II DNA modification enzyme [Beggiatoa sp. PS]
          Length = 526

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 75/371 (20%), Positives = 127/371 (34%), Gaps = 104/371 (28%)

Query: 20  KDKIIKGNSISVLE---KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD---AVTDSW- 72
            +K+  G+ + VL    ++  +SVDLI+ DPP+N + N  ++  D  +     A  D+W 
Sbjct: 1   MNKLYLGDCLDVLRNELEIKPESVDLIYIDPPFNSKRNYNIFFDDKEIQTQRMAFEDTWS 60

Query: 73  ----------------DKFSSFEA-----------YDAFTRAWLLACRRVLKPNGTLWVI 105
                           DK  +              Y       ++   +VLKP G+ ++ 
Sbjct: 61  LHSVGESLTELDTIHHDKLLNLLNAYRDIAPQVFPYLVMMTLRIIELHKVLKPTGSFYLH 120

Query: 106 GSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS------- 156
                   + T+   +       N+I W++S P  N   +   +    L +         
Sbjct: 121 CDPTASHYLKTVCDAVFGVKNFRNEISWKRSTPRGNASKKLAVSCDVVLFYTKSGLYTWY 180

Query: 157 -------PSPKAKGYTF---------------NYDALKAANEDVQMRSDWLIP------- 187
                  P   AK Y +                +  +    E   +   W  P       
Sbjct: 181 PIYGEYRPEYIAKYYNYIDDDTGRFFQPTSLLGHQEVNPIYEWQGLSKPWRYPKHRLDEL 240

Query: 188 -------------ICSGSERLRNKDGEKL-------------------HPTQKPEALLSR 215
                        +      L  + G+ L                   +PTQKP+ALL R
Sbjct: 241 EENQQIYWPPKGGMPRFKRYLDEQKGQPLQSLWDDIPPINSQAIERLGYPTQKPKALLER 300

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           I+ +S+  GDIILD F G GT+   A+ L R +IGI++    + +  +R+         +
Sbjct: 301 IIQASSNEGDIILDAFCGCGTTVDAAESLNRQWIGIDIAPFALSLIKRRLQDTYGDDLSK 360

Query: 276 LTVLTGKRTEP 286
             V      EP
Sbjct: 361 FEVRGTPTDEP 371


>gi|41057660|ref|NP_958114.1| gp10 [Burkholderia phage Bcep43]
 gi|40737647|gb|AAR89300.1| gp10 [Burkholderia phage Bcep43]
          Length = 262

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 63/270 (23%), Positives = 98/270 (36%), Gaps = 50/270 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++  G+ + ++  LP  SVD++  D PY                     +WD    F+A 
Sbjct: 10  ELYWGDCLDLMRLLPDASVDMVMCDLPYGT----------------TACAWDSVLPFDAL 53

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN-F 140
            A         RR++K  G + +  +         ++ +   W   D VW K+ P     
Sbjct: 54  WA-------QYRRIVKSRGAVVLTAA---QPFTSALVASNFEWFKYDWVWAKNRPTNFAH 103

Query: 141 RGRRFQNAHETLIWASP----------------------SPKAKGYTFNYDALKAANEDV 178
              +    HE+++  SP                          K  T+N DA+ +     
Sbjct: 104 AKNKPMPKHESVLVFSPGTTVHASQFKLRMTYNPQGLTRIEPRKMKTYNTDAMFSKRGSH 163

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
              +                D   LHPT KP AL+  ++ + T  GD +LD   GSGT+G
Sbjct: 164 GEYTQEFTNYPHSLLEFST-DQLNLHPTAKPVALMEYLIRTYTSEGDTVLDNCMGSGTTG 222

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
                  R FIG+E   DY  IAT R+   
Sbjct: 223 VACINTGRRFIGMEKDADYALIATGRMREA 252


>gi|219850185|ref|YP_002464618.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
           aggregans DSM 9485]
 gi|219544444|gb|ACL26182.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aggregans DSM
           9485]
          Length = 345

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/303 (20%), Positives = 103/303 (33%), Gaps = 67/303 (22%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
             G+S+ +L++LP   VDL+   PP+ L         D S                 Y  
Sbjct: 26  YLGDSLDLLKRLPDDCVDLVVTSPPFALLRQKAYGNTDQS----------------EYVE 69

Query: 84  FTRAWLLACRRVLKPNGTLW-----------VIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           +   +    RRVL+  G+              + S +    +  M   + F++  +  W 
Sbjct: 70  WLCRFGAEVRRVLRETGSFVLDLGGAYQRGVPVRSLYQYRVLLKMCDEVGFYLAEEFFWY 129

Query: 133 KSNPMPNF------RGRRFQNAHETLIWASPSPKAKGYT--------------------- 165
               +P+       R  R +++  T+ W S S   K                        
Sbjct: 130 NPAKLPSPIEWVNKRKIRVKDSVNTVWWFSKSEWPKADVRQVLAPYSERMKTLLKNPDAF 189

Query: 166 ---FNYDALKAANEDVQMRSDWLIPIC----------SGSERLRNKDGEKLHPTQKPEAL 212
               N  +    ++     +   IP            S   RL    G + HP + P AL
Sbjct: 190 YKPKNRPSGHDISKGFGSDNGGAIPSNLLQIPNTESNSSYLRLSKLVGIEAHPARFPAAL 249

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
               +   T  GD++LD F GS T+G VA++  R +I +E+   Y+  +  R     P  
Sbjct: 250 PEFFIKLLTTEGDLVLDIFAGSNTTGKVAEQFGRRWIAMEIDAGYVAGSALRFMEHLPQS 309

Query: 273 NIE 275
            + 
Sbjct: 310 EVA 312


>gi|260575307|ref|ZP_05843307.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sp. SW2]
 gi|259022567|gb|EEW25863.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sp. SW2]
          Length = 541

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 79/361 (21%), Positives = 130/361 (36%), Gaps = 114/361 (31%)

Query: 21  DKIIKGNSISVLEK-LPAKSVDLIFADPP------YNLQLNGQLYRPDHSLVDAVTDSWD 73
           + +  G+++ VL + +   SVDLI+ DPP      YN+   G       + ++A  D+W 
Sbjct: 3   NHLYYGDNLKVLRESIRDASVDLIYLDPPFNSNASYNVLFKGPQGADSAAQIEAFDDTWH 62

Query: 74  KFSSFEA-------------------------------YDAFTRAWLLACRRVLKPNGTL 102
              S E                                Y A     L+   RVLKP G+L
Sbjct: 63  WNDSAEEAFGDVMRGGNVAASTMLRAMRSFLGDNDMMAYLAMMAVRLVELHRVLKPTGSL 122

Query: 103 WVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS-- 158
           ++         +  +L  +  N    N+I+WR++N     +   F   H+T+++ S S  
Sbjct: 123 YLHCDPTASHYLKVLLDAVFGNENYRNEIIWRRTNAHNV-KSNVFPRVHDTILFYSKSDK 181

Query: 159 ----PKAKGYTFNYDALKAANEDVQ----------------------------------- 179
                +  GY+       + +ED +                                   
Sbjct: 182 STWAKQFIGYSPEQLKRYSVDEDGRLFTGQDLTMIGGSAERKKEWRGTIPSSGRAWGASL 241

Query: 180 -MRSDWLIP--ICSGSERLRNKDGEKLHPTQKP--------------------------- 209
             R +W     I +  +     DG K+   +KP                           
Sbjct: 242 EQREEWWAAGLILTKKDGTPRLDGRKVFLDEKPGKQADSLWTDILRVGNTADERLGYPTQ 301

Query: 210 --EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
              ALL RIL +S+ PGD++LDPF G GT+   A+KL R +IGI++    + +  KR+  
Sbjct: 302 KPVALLERILNASSNPGDVVLDPFCGCGTTVHAAQKLGRQWIGIDVTHLAVGLIEKRLRD 361

Query: 268 V 268
            
Sbjct: 362 A 362


>gi|315607455|ref|ZP_07882451.1| DNA (cytosine-5-)-methyltransferase domain protein [Prevotella
           buccae ATCC 33574]
 gi|315250887|gb|EFU30880.1| DNA (cytosine-5-)-methyltransferase domain protein [Prevotella
           buccae ATCC 33574]
          Length = 626

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 75/366 (20%), Positives = 132/366 (36%), Gaps = 78/366 (21%)

Query: 21  DKIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLY---RPDHSLVDAVT------ 69
           + +++G  +S    L  K   VDL++ DPP+    +       R +  + +A+       
Sbjct: 63  NLVLRGECLSACAYLKEKGVKVDLVYIDPPFASGADYAKKVYIRRNPRVAEAIKQAETEL 122

Query: 70  --------------DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
                         D WDK    E Y  +    L+A + V+    +++V   +H    + 
Sbjct: 123 DSEELRNFEEKMYGDVWDK----ERYLNWMYENLVAIKAVMSDTASIYVHLDWHIGHYVK 178

Query: 116 TMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
            ++  +       N+++W   N M     R   N H++L + S    +  +T+N    K 
Sbjct: 179 ILMDEVFGEDKFRNEVIWYYYNKMQGNVNRFASN-HDSLFYYSK---SDEFTYNQVKEKR 234

Query: 174 ANEDVQMRSDWLIPICSGSERLRN---------------------------KDGEKLHPT 206
           A    Q++  W            N                           K+    + T
Sbjct: 235 AETIKQIKRIWDKETQKLVNAKDNQGKVIYVDSDEFTIDDVWRMSMLQPADKNEPVGYAT 294

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           QKPEALL RI+ +S+    ++ D F GSG + AVA +L R FI  ++  + I+    R+ 
Sbjct: 295 QKPEALLERIIKASSNEDMLVADFFGGSGVTAAVANRLGRRFIHCDIGINSIETTRDRLR 354

Query: 267 SVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGT 326
            V      E+  +    +  R     + +   + PG    +A                  
Sbjct: 355 KV--GAEFEVMEVKDGVSLYRNPVQTMDKLKSLIPGLRNEDALDKFWE------------ 400

Query: 327 ELGSIH 332
             GSIH
Sbjct: 401 --GSIH 404


>gi|328954069|ref|YP_004371403.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
           11109]
 gi|328454393|gb|AEB10222.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
           11109]
          Length = 423

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 68/337 (20%), Positives = 118/337 (35%), Gaps = 57/337 (16%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            +II G+    + +L   +V L+   PPY      + Y P   +       +D   S+E 
Sbjct: 4   HRIIVGDCRR-MPELADATVHLVVTSPPY---WQLKDYGPKQQI------GYDD--SYED 51

Query: 81  YDAFTRAWLLACRRVLKPNGTLW-----------VIGSYHNIF---RIGTMLQNLNFWIL 126
           Y          C RVL P   L              G Y  +     I    + + F  +
Sbjct: 52  YINHLNLVWQECWRVLHPGCRLCVNIGDQFARAAYYGRYKIMPIRTEIIKFCETMGFDYM 111

Query: 127 NDIVWRKSN------------PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
             I+W+K                P  R    +  +E ++                A    
Sbjct: 112 GAIIWQKVTTCNTSGGATIMGSFPFPRNGMLKLDYEFILIFKKPGATPP------ASAEV 165

Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
            E  +M  +       G      +   K H    PE L  R++   T  G+ +LDPF GS
Sbjct: 166 KERSRMSQEEWKTYFQGHWNFPGEKQSK-HLAMFPEELPRRLIKMFTFVGETVLDPFLGS 224

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ-PLGNIELTVLTGKRTEP-----RV 288
           GT+   A+ L R+ +G E+ ++++ I  +++      L   +  VLT ++  P     R+
Sbjct: 225 GTTSLTARNLGRNSVGYEINEEFLPIIQEKLGLQHGALFGSDEVVLTQRKKAPTDHMTRI 284

Query: 289 AFNLLVERGLIQ------PGQILTNAQGNISATVCAD 319
           A    V    I+      P +    ++ + ++    D
Sbjct: 285 AALPYVFHDPIRFDKKNNPKERTYGSKIDSTSRKKED 321


>gi|206890953|ref|YP_002248361.1| modification methylase MjaI [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206742891|gb|ACI21948.1| modification methylase MjaI [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 446

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 62/274 (22%), Positives = 103/274 (37%), Gaps = 35/274 (12%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            +   KII G+S   ++++  +SV LI   PPY              L D    S   F+
Sbjct: 1   MKTYHKIIIGDSR-WMKEVADESVHLIVTSPPY------------WQLKDYGNGSQIGFN 47

Query: 77  S-FEAYDAFTRAWLLACRRVLKPNGTLW-VIGS------YHNIF-------RIGTMLQNL 121
             +E Y          C RVL     L   IG       Y+  +        I    + +
Sbjct: 48  DTYEEYINNLNLVWKECHRVLHKGCRLCINIGDQFARSVYYGRYKVIPIRTEIIKFCETI 107

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETL------IWASPSPKAKGYTFNYDALKAAN 175
            F  +  I+W+K        G     ++         +        K Y       K   
Sbjct: 108 GFDYMGAIIWQKVTTCNTTGGATVMGSYPYPRNGILKLDYEFILIFKKYGNPPKVSKEIK 167

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
           E  ++  +      +G      +  +K H    PE L  R++   +  G+ +LDPF GSG
Sbjct: 168 EKSKLTDEEWKQYFTGHWNFSGEKQDK-HLAMFPEELPKRLIKMFSFVGETVLDPFLGSG 226

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           T+  VA+KL R+ IG E+ ++++ I  +++   Q
Sbjct: 227 TTSLVARKLNRNSIGYEINENFLSIIKEKLGITQ 260


>gi|325107559|ref|YP_004268627.1| DNA methylase N-4/N-6 domain protein [Planctomyces brasiliensis DSM
           5305]
 gi|324967827|gb|ADY58605.1| DNA methylase N-4/N-6 domain protein [Planctomyces brasiliensis DSM
           5305]
          Length = 232

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 64/265 (24%), Positives = 109/265 (41%), Gaps = 42/265 (15%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           E+ +++   ++  +L KLP +S+D +  DP Y    N   Y  +  +  A  D       
Sbjct: 3   EFVNQVFHADARHLLAKLPEESIDAVICDPMYGTAKN---YEYEWGIDPANGD------- 52

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E +  + +     CRRVLKP G L    ++    +     Q+   W+ N  VW  +   
Sbjct: 53  PELHWEYHKPIYEECRRVLKPGGAL----AWGQGAKFCEHFQD---WLGNHRVWTITRFR 105

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           P     +    H  ++           T     +   + D  +  D + PI         
Sbjct: 106 P---KGKSATGHAWVVQ----------TREQKPIPMPDRDSLVICDNVGPI--------- 143

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
               KLHP  K    L  ++   TKPGDI+LD   G G++   A++L R +IG ++ Q Y
Sbjct: 144 ---RKLHPCIKMVEELKFVVEELTKPGDIVLDCCCGLGSTLLAAEQLGRRWIGCDISQRY 200

Query: 258 IDIATKRIASVQPLGNIELTVLTGK 282
             IA  R+ +++     + ++ T K
Sbjct: 201 SQIAKLRMENLRSHMESQGSLRTQK 225


>gi|196231519|ref|ZP_03130377.1| DNA methylase N-4/N-6 domain protein [Chthoniobacter flavus
           Ellin428]
 gi|196224372|gb|EDY18884.1| DNA methylase N-4/N-6 domain protein [Chthoniobacter flavus
           Ellin428]
          Length = 276

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/278 (20%), Positives = 97/278 (34%), Gaps = 52/278 (18%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+ +S +  L A SVD++   PPYNL ++   +R D S               E Y 
Sbjct: 12  LHHGDCVSGMADLDADSVDVVVTSPPYNLDIDYATFRDDASR--------------EDYL 57

Query: 83  AFTRAWLLACRRVLKPNGTLW-VIGSYHNIFRI----------GTMLQNLNFWILNDIVW 131
            ++  W     R+LKP+G+ +  +G+      +             LQN   WI +  V 
Sbjct: 58  EWSVRWATEVHRLLKPDGSFFLNVGASPANPLLPHQLVLALQPLFRLQNTIHWIKSVTVQ 117

Query: 132 RKSNP-------MPNFRGRRFQNAHETLIWASPSPKAKGYTF--------------NYDA 170
            +  P        P    R   + HE +   +                            
Sbjct: 118 PRRAPELSVGHFKPINSRRYITDCHEYVFHLTHKGDVPIDRLAVGVAYADKSNIARWAHT 177

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII-LD 229
                +     ++W I      E ++++D ++ HP   P  L             ++ LD
Sbjct: 178 RGVKRDRRCRGNNWFISY----ETIQHRDRQRPHPATFPTKLAEMCFRLHGAREGLVGLD 233

Query: 230 PFFGSGTSGAVAKKLRR-SFIGIEMKQDYIDIATKRIA 266
           PF G G + + A       FIG E+ + Y+  A  R+ 
Sbjct: 234 PFLGIGHAASAAATCGLERFIGFEIDEGYLTEARSRLG 271


>gi|194335796|ref|YP_002017590.1| DNA methylase N-4/N-6 domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308273|gb|ACF42973.1| DNA methylase N-4/N-6 domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 416

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/266 (24%), Positives = 101/266 (37%), Gaps = 46/266 (17%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF-SSFEAYDAFTRAWLL 90
           +  LP +SV L+   PPY              L D  TD+   F  S+E+Y         
Sbjct: 1   MNLLPGRSVHLVVTSPPY------------WQLKDYGTDNQIGFHESYESYINNLNLVWN 48

Query: 91  ACRRVLKPNGTLW-VIGS------YHNIF-------RIGTMLQNLNFWILNDIVWRKSN- 135
            C RVL P   L   IG       Y+  +        I    + + F  +  ++W+K   
Sbjct: 49  ECERVLHPGCRLCINIGDQFARSVYYGRYKVIPIRTEIIKFCETIGFDYMGAVIWQKVTT 108

Query: 136 -----------PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
                        P  R    +  +E ++       A   T      K   E   M ++ 
Sbjct: 109 TNTTGGASIMGSFPYPRNGILKIDYEFILIFKKQGDAPKPT------KEQKERSAMTTEE 162

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
                SG         ++ H    PE L  R++      GD +LDPF GSGT+   AK L
Sbjct: 163 WNTYFSGHWNFAGAK-QEGHLAMFPEELPHRLIKMFAFRGDTVLDPFMGSGTTSLAAKNL 221

Query: 245 RRSFIGIEMKQDYIDIATKRIASVQP 270
            R+ +G E+  ++I+IA +++ + QP
Sbjct: 222 ERNSVGYEINPEFIEIARQKLNTKQP 247


>gi|262201401|ref|YP_003272609.1| DNA methylase N-4/N-6 domain-containing protein [Gordonia
           bronchialis DSM 43247]
 gi|262084748|gb|ACY20716.1| DNA methylase N-4/N-6 domain protein [Gordonia bronchialis DSM
           43247]
          Length = 345

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 69/340 (20%), Positives = 112/340 (32%), Gaps = 105/340 (30%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF- 78
           +++I+ G++++ L++LP  S+D + A PPY              L D   D      S  
Sbjct: 8   RNRIVIGDALTRLQELPDSSIDCVVASPPYF------------RLRDYNADGQLGLESHV 55

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLW-VIGSYHNIF---------------RIGTMLQNLN 122
           +       A      R+L P GT W  +G  ++                 R+   L +  
Sbjct: 56  DQCVDNLAAISEQAGRILVPTGTFWLNVGDTYSGHASQGAARKSLLMAPERLALRLHHDG 115

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA-------- 174
           + I N IVW K NP+P+    R    +E +   +  P    Y F+ DA++          
Sbjct: 116 WLIRNKIVWAKPNPVPSSVRDRLNCTYEVIYVLARQP---HYFFDLDAIREPLRTARSST 172

Query: 175 ----NEDVQMRSDWLIPI--CSGSERLRNKDGEKLHP---------------------TQ 207
                     R  W  P    +   +     G   HP                       
Sbjct: 173 RANDEGQATTREAWRGPNGMAATGLQTLKAQGRAGHPLGKNPGDVWTITPGGYRGAHHAI 232

Query: 208 KPEALLSRILVSSTK--------------------------------------PGDIILD 229
            P  L  R++ +                                            ++LD
Sbjct: 233 FPLRLAERMIAAGCPEARCTRCRRPWTRRVIRALGGTATRAAITPTCQCNADHEPGLVLD 292

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           PF GSGT+   A+ L+R + GIE+  D+   A  RIA+ +
Sbjct: 293 PFMGSGTTAIAAENLKRDWYGIELNPDFAAAARDRIATAR 332


>gi|218891243|ref|YP_002440109.1| DNA methylase N-4/N-6 [Pseudomonas aeruginosa LESB58]
 gi|218771468|emb|CAW27235.1| DNA methylase N-4/N-6 [Pseudomonas aeruginosa LESB58]
          Length = 313

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/324 (18%), Positives = 105/324 (32%), Gaps = 88/324 (27%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           +P +S       PPY    +             +        +   + A         RR
Sbjct: 1   MPDQSFHCCITSPPYFGLRDY-----------GMASQIGLEQTPAEFVARLVEVFREVRR 49

Query: 95  VLKPNGTLWVIGSYHN-------------------------------------------- 110
           VL+ +GTLWV                                                  
Sbjct: 50  VLRDDGTLWVNMGDSYASIAGGYAPEGSAGKHDIVSRNTRGAVRRGHRRKPAEGLKQKDL 109

Query: 111 ---IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
               +R+   LQ+  +++  DI+W K NPMP     R   AHE +   +    ++ Y ++
Sbjct: 110 MGIPWRLAFALQDDGWYLRQDIIWHKPNPMPESVRDRCTKAHEYVFMLTK---SRRYYYD 166

Query: 168 YDALKAANEDVQMRSDWLI------------------PICSGSERLRNKDG--------- 200
           ++A+K          +                        +G    RN+           
Sbjct: 167 HEAVKEDAVSEHPSGNGFKRDARESYKNLDGTARGNDEQWTGVGGKRNRRSVWTVPTAGF 226

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +  H    P  L+   +++    G ++LDPF G+GT+  VA +  R  + IE+  +Y  I
Sbjct: 227 KGAHFATFPPDLIRPCVLAGAPRGGLVLDPFGGAGTTALVAMQEGRRSVLIELNPEYAAI 286

Query: 261 ATKRIASVQPLGNIELTVLTGKRT 284
           A  R+ +    G  +L +L  ++ 
Sbjct: 287 ARNRLDTAWLEGAAQLDLLHDQKE 310


>gi|156742487|ref|YP_001432616.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156233815|gb|ABU58598.1| DNA methylase N-4/N-6 domain protein [Roseiflexus castenholzii DSM
           13941]
          Length = 464

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 62/266 (23%), Positives = 109/266 (40%), Gaps = 44/266 (16%)

Query: 40  VDLIFADPPYNLQLNG----QLYRPDHSLVD-----AVTDSWDKFSSFEAYDAFTRAWLL 90
           ++LI+ DPP+   ++     +L  P  + +         D+WD     +AY  F    L+
Sbjct: 80  INLIYIDPPFGSGIDRARRVRLRGPGPARLIPAAEVEYCDTWDD----DAYLQFMYERLI 135

Query: 91  ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
           A R +L  +G +++   +     +  ++  +              P      R+F   H+
Sbjct: 136 ALRDLLADDGCIYLHCDFRKAHHLRCLMDEVFGAERMLNEIIWFYPRGGDGERQFNRKHD 195

Query: 151 TLIWASPSPKAKGYTFNYDALKAAN----------EDVQMRSDWLI-PICSGSERLRNKD 199
           T++  +       +TFNYDA+              ED + R  W + P     +    K 
Sbjct: 196 TILLYARGD---RWTFNYDAVLIPYTRRQIARFRQEDERGRYYWNVNPRGERVKTYLRKP 252

Query: 200 G-----------------EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           G                 +  +PT KP ALL RI+ +S++PGD++LD F GSGT+   A+
Sbjct: 253 GIGAYDVWTIPIDAALVRDLGYPTAKPLALLERIIRASSRPGDLVLDCFAGSGTTAVAAQ 312

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASV 268
            L R +I  +     I +  +R+   
Sbjct: 313 HLERRWIACDANPGAIQVTARRLRQA 338


>gi|307942430|ref|ZP_07657781.1| DNA methylase [Roseibium sp. TrichSKD4]
 gi|307774716|gb|EFO33926.1| DNA methylase [Roseibium sp. TrichSKD4]
          Length = 373

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 68/341 (19%), Positives = 103/341 (30%), Gaps = 107/341 (31%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+ + +L  LP +SVD +   PPY    +             V        +   + 
Sbjct: 14  LHVGDVLEMLATLPGESVDCVVTSPPYWGLRDY-----------GVEGQIGLEPTLAEHI 62

Query: 83  AFTRAWLLACRRVLKPNGTLWVI--------------------GSYHNIFR--------- 113
           A   A     RRVLKP GTLW+                     G+ +  FR         
Sbjct: 63  ALMVAVFEEVRRVLKPTGTLWLNYGDCYASSPNGRSAADTKAEGNDNRTFRDKPFSTVQG 122

Query: 114 -------------IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI------- 153
                        +   LQ   +W+ ++I+W K NPMP     R   AHE +        
Sbjct: 123 VLKPKDLCMIPNRLAIALQEAGWWVRSEIIWAKPNPMPESIRDRPATAHEKIFLLSKSAK 182

Query: 154 ----------------------WASPSPKAKGYTFN------------------------ 167
                                 WAS          N                        
Sbjct: 183 YFYDANAVRQGQHKVSKHTVAGWASGPGAHDTIKHNRGSRSKDTNSSASPPNSRPHSLSE 242

Query: 168 YDALKAANEDVQMRSDWL-IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
           ++A   A+   +   +W          ++        H    P AL  R + +    G +
Sbjct: 243 FEARHNADYPGRNLRNWEPEAAQPDVWKIATSPFPGAHFATFPLALAQRCVKAGCPKGGV 302

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           +LDPF G+GT+   A         IE+  +Y  IA +RI  
Sbjct: 303 VLDPFGGAGTTAIAALAHGCQAQLIEINPEYARIAGERIEQ 343


>gi|159030769|emb|CAO88447.1| cfrBIM [Microcystis aeruginosa PCC 7806]
          Length = 390

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 108/297 (36%), Gaps = 46/297 (15%)

Query: 1   MSQKNSLAINENQNSIFEWK-----DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG 55
           + +++   +   +    E+K     + I  G+   +LE++PA+SVDLIF  PPY      
Sbjct: 90  LLKQDESKLENRKKPKKEYKLSSLRNTIGFGDCSELLEEMPAESVDLIFTSPPYF----- 144

Query: 56  QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS-------Y 108
              RP++S  +       K           R  +  C RVL       +  S        
Sbjct: 145 -NARPEYSEFEEYESYLLK----------LRQVIRKCHRVLSEGRFFVINISPVLLRRAS 193

Query: 109 HNI--------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
            N         F +  +     +  ++DI+W K        GR  + A +       +  
Sbjct: 194 RNQASKRIAVPFDLHRIFIEEGYDFIDDIIWLKPEGAGWATGRGRRFAADRNPLQYKTVP 253

Query: 161 AKGYTFNYDALKAANEDVQMRS------DWLIPICSGSERLR----NKDGEKLHPTQKPE 210
              Y   Y        D  +R+           I  G ER      N      HP   P 
Sbjct: 254 VTEYVLVYRKHTDLLIDWHIRNHPAQEVVKASKIADGYERTNVWKINPVTNSKHPAAFPV 313

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            L  +++   +  GD++LDPF GSGT G  A  L R F+  E   +YI++  K I  
Sbjct: 314 ELAEKVITYYSFKGDVVLDPFAGSGTVGLAAASLDRRFVLFESNFNYIELIRKLITE 370


>gi|326802743|ref|YP_004320561.1| DNA (cytosine-5-)-methyltransferase [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651281|gb|AEA01464.1| DNA (cytosine-5-)-methyltransferase [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 371

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 69/303 (22%), Positives = 124/303 (40%), Gaps = 51/303 (16%)

Query: 10  NENQNSIFE--WKDKIIKGNSISVLEKLPAKS-----------VDLIFADPPYNLQLNGQ 56
           N +++  FE  W++ I+ G+++  L+ +               V LI+ DPP+  Q   +
Sbjct: 70  NGDEHPAFEDGWRNMIVFGDNLQFLKTINENKDPLIKDKVKGKVKLIYIDPPFATQDEFE 129

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
                 +  D    S         +  F R  L+  + +L  +G+++V      +  I T
Sbjct: 130 NKEGAKAYSDKKKGS--------EFLEFIRRRLILAKEILSDDGSIYVHLDEKMVDYIKT 181

Query: 117 MLQNL---NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP---KAKGYTFNYDA 170
           ++  +   N +    I + K++     +   +   H+ +++ S S      K Y  +Y  
Sbjct: 182 IMDEIFGKNNYKRQIIWFTKTSSGYKTKAENWIRGHDVILYYSKSDNPIFNKQYILDYKK 241

Query: 171 LKAAN--EDVQMRSDWLIPICSGSERLRNK----------------------DGEKLHPT 206
              A   +       +     +G  +  ++                           +PT
Sbjct: 242 EYLARFKKIDDNGRKYRDDRSNGERQYLDELKGIAINDVWDDIMSFQQAATSKEITGYPT 301

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           QKPE LLSRI+ +ST  GD+I+D F GSGTS AVA+KL R +I  ++ +       KRI 
Sbjct: 302 QKPEELLSRIIKASTNEGDLIMDFFGGSGTSMAVAEKLGRRWITCDLGKLAFLTMQKRIL 361

Query: 267 SVQ 269
            +Q
Sbjct: 362 QIQ 364


>gi|166366294|ref|YP_001658567.1| site-specific DNA-methyltransferase [Microcystis aeruginosa
           NIES-843]
 gi|166088667|dbj|BAG03375.1| site-specific DNA-methyltransferase [Microcystis aeruginosa
           NIES-843]
          Length = 312

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 62/306 (20%), Positives = 114/306 (37%), Gaps = 48/306 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV---------------- 65
           +++ G+   +L  L   S+  +  DPPYN +  G+ +  D                    
Sbjct: 8   QLLHGDCRELLTLLEESSISCVITDPPYNYEFIGRNWDHDEIQRRRERIQNSSTLVKNIP 67

Query: 66  -------DAVTDSWDKFS--SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
                      + W + +  +   Y  +   W     RV K    + V  S   +  I  
Sbjct: 68  YGSGLAGGVRNERWYQRNRENVVNYIEWATDWSKELMRVCKSGAVVAVFSSTRTLAHIQI 127

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRG-------------RRFQNAHETL--IWASPSPKA 161
            L+N  F+  + +V+R+ + +P                 +++Q  H  L   W +     
Sbjct: 128 ALENAGFYARDVLVYRRHSGIPKGLNIEKKLDKIGDTNAQQWQGWHTCLRNEWEAIVIVQ 187

Query: 162 KGYTFNYDALKAANEDVQMRSD-----WLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
           K    NY            ++      +   I  G  + R+++ ++ H T KP +L+ ++
Sbjct: 188 KPLKNNYIETLQMTGLGPFKAILSDGSFQSNILEGFSKGRDENFDE-HCTIKPLSLIRKL 246

Query: 217 LVSSTKPGD--IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
           L       +  I+LDPF G+GT+   A +L    IGIE++  YI+I  +R+         
Sbjct: 247 LELFLPQDNSHIVLDPFAGTGTTLIAALELGYQTIGIEIEAQYINIIQQRLGEYFGKIGQ 306

Query: 275 ELTVLT 280
           E  V  
Sbjct: 307 EFEVFD 312


>gi|311111790|ref|YP_003983012.1| adenine specific DNA methylase [Rothia dentocariosa ATCC 17931]
 gi|310943284|gb|ADP39578.1| adenine specific DNA methylase [Rothia dentocariosa ATCC 17931]
          Length = 413

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 120/297 (40%), Gaps = 43/297 (14%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQL----------------------NGQLYRP 60
           +++ ++++ L +LP+ S  +I+ DPP+N                           +    
Sbjct: 32  VVQADNLAYLSELPSASFTVIYIDPPFNTGKTQTRRTLKTAPAADGEEQGKGNGNRTGFQ 91

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
             S   A+        +FE Y AF    +    R+L  +GTL++   +  +     M   
Sbjct: 92  GKSYTSALQTLASYHDAFEDYWAFLEPRIRQAHRLLTEDGTLYLHLDWREVHYAKVMCDM 151

Query: 121 L--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN--------YDA 170
           +      +N+I+W           +R+   H+ ++    +P+   Y FN        Y A
Sbjct: 152 IFGRDCFINEIIWAYDYGAK--STKRWPTKHDNILMYVKNPQE--YYFNADAVDREPYMA 207

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
                E+   R      +   +        +  +PTQKP  LL R++ +S++PGD +LD 
Sbjct: 208 PGLVTEEKAARGKLPTDVWWHTIVSPTGKEKTGYPTQKPLGLLKRMIAASSRPGDWVLDF 267

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
           F GSGT+GA A  L R F+ ++     I++  KR+       N++       R  PR
Sbjct: 268 FAGSGTTGAAAAALGRRFVCVDQNPPAIEVMAKRL-------NVDAESFADYRGVPR 317


>gi|116486909|emb|CAH64696.1| DNA methylase [Wolbachia endosymbiont of Drosophila teissieri]
 gi|326485621|gb|ADZ76079.1| DNA methyltransferase [Wolbachia endosymbiont of Drosophila
           santomea]
          Length = 404

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 91/247 (36%), Gaps = 34/247 (13%)

Query: 21  DKIIKGNS--ISVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +I  G+S  +   + L      D+   DPPYN+       R D  +++           
Sbjct: 163 HRIYCGDSSLVESYKALLDDKMADITVCDPPYNVDYVSSQEREDKKILNDNQG------- 215

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E Y+ F            K  G +++  S      +  + +         I+W K++  
Sbjct: 216 -EKYELFLYDICSNILAYTK--GAIYICTSSSEFSTLQKVFEEAGGRWSTFIIWAKNHFT 272

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                   Q  +E +++   S   + +                   W     +       
Sbjct: 273 LGRSDY--QRQYEAMLYGWKSGNKREWH----------GGRNQSDLWFYDKPT------- 313

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
                LHPT KP  L+ + +V+S++ GDI+LDPF GSG++    ++  R    IE+   +
Sbjct: 314 --HNTLHPTMKPVELMEKAIVNSSRSGDIVLDPFSGSGSTLIACERTGRICRTIELDSKF 371

Query: 258 IDIATKR 264
           +D+  KR
Sbjct: 372 VDVTIKR 378


>gi|205320897|gb|ACI03011.1| hypothetical protein V35_57 [uncultured bacterium HHV35]
          Length = 577

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 75/309 (24%), Positives = 125/309 (40%), Gaps = 60/309 (19%)

Query: 3   QKNSLAINENQNSIFEWKDK---IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQ 56
                  N  Q  I E+ ++   IIKGN++  L  L      S+DLI+ DPP+N + +  
Sbjct: 153 NSKRYTENGVQEDIAEFTNQDNLIIKGNNLIALHSLKERYAGSIDLIYIDPPFNTEHDSF 212

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
            Y              DKF+    +  F +  L   R +L  +GT++V   ++    +  
Sbjct: 213 KY-------------NDKFNE-STWLTFMKNRLEIARDLLSVSGTIYVHIDHNEGHYLKV 258

Query: 117 MLQNL--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
           ++  +    +  N+I+WR S          F+  H+++   + S      ++ ++   + 
Sbjct: 259 LMDEIFGRQYFRNEIIWRYS-GWNKKLNYGFEKRHDSIFVYAKSDSQYFESY-FEKWASK 316

Query: 175 NEDVQMRSDWLIPICSGSERLRNKDG---------------------------------- 200
            E V+ R   L+    G E + +  G                                  
Sbjct: 317 EEYVKKRKQKLLTDTDGREYVLSDAGGGNRTKVFIEDVLSKGVVVDDVWDIDKLNNSAKE 376

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI-D 259
                +QK EALL RI+ +S  P  I+LD   GSGT+ A A K+ R +IGIE + DYI +
Sbjct: 377 SVGFASQKKEALLERIISASCPPNGIVLDFHLGSGTTCAAAHKMGRRYIGIE-QMDYINE 435

Query: 260 IATKRIASV 268
               R+  V
Sbjct: 436 TTVPRLQKV 444


>gi|311977254|gb|ADQ20507.1| M.BsaJI [Geobacillus stearothermophilus]
          Length = 437

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 51/272 (18%), Positives = 101/272 (37%), Gaps = 39/272 (14%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           E+ +KII G+++ +L  +   S+ L F  PPY    +  +Y                 SS
Sbjct: 165 EYMNKIINGDALKILRSVENNSIHLTFTSPPYYNARDYSIY-----------------SS 207

Query: 78  FEAYDAFTRAWLLACRRVLKPN---------------GTLWVIGSYHNIFRIGTMLQNLN 122
           +E Y  F         RV K                 G  +    Y   + +   L    
Sbjct: 208 YEEYLDFLEEVFSEVYRVTKDGRFLIVNTSPIIIPRVGRKYSSKRYPIPYDLHGRLVKQG 267

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
           +  ++DI+W K       R   FQ   + L++   +   +   +   + +  + +++   
Sbjct: 268 WEFIDDIIWVKPEASVKNRIGGFQQFRKPLMYKPNAVTEQLMVYRKKSNRLIDWNIRAYE 327

Query: 183 DWLI-------PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
           D ++          + +    +   +K+H    P+ L   ++   +  GD++ DPF GSG
Sbjct: 328 DEVVEASKVLTDFETTNVWEIDPVYDKVHSAVFPKKLCDNVVKYYSMKGDLVFDPFVGSG 387

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           T    A  L R     E+ ++Y +   + ++ 
Sbjct: 388 TLAKSALSLERKVFMTEISKEYFERIMENLSD 419


>gi|317132770|ref|YP_004092084.1| ParB domain protein nuclease [Ethanoligenens harbinense YUAN-3]
 gi|315470749|gb|ADU27353.1| ParB domain protein nuclease [Ethanoligenens harbinense YUAN-3]
          Length = 420

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 98/268 (36%), Gaps = 31/268 (11%)

Query: 20  KDKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K  ++ G+S       + L  K V+L+  D PY + L     +  +          D   
Sbjct: 166 KHTVVCGDSTDPETFAKLLGDKKVNLVCTDAPYFVNLENASGKIAN----------DDLK 215

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             +AYD F        +  +  + +++   +           ++  F +   ++W+K   
Sbjct: 216 GTQAYD-FLMKCFSNFKNAMADDASIYEFYATMQARVFYDAFEDAGFKVGAGLIWKKPRA 274

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
            P  R     N    +       K K Y            D + ++ +       S    
Sbjct: 275 -PLMRTDWKFNMEPIIFGWRKDGKHKWY-----------GDQKQKAVFEFDGVKNS---- 318

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
            K+    HP+ KP  L++ ++  ST    ++LD F GS ++     ++ R   G+E++  
Sbjct: 319 -KEDGFGHPSSKPVPLIAYLIEQSTATNGLVLDGFLGSASTLIACDQIGRICYGVELEPK 377

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRT 284
           Y+D+A  R        + ++ ++   + 
Sbjct: 378 YVDVAVVRYLHSHNEDSSDVKLVRDGKE 405


>gi|113707431|gb|ABI36611.1| M2.NcuI DNA methyltransferase [Moraxella cuniculi]
          Length = 278

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 60/279 (21%), Positives = 108/279 (38%), Gaps = 36/279 (12%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
            + +   +S + ++++P  SV  I   PPY N++   +     +S  +  T        +
Sbjct: 1   MNTVFFKDSRN-MKEVPNNSVHPIITSPPYFNIKDYAKDGYQQNSHSNKHTSQIGDIDDY 59

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLW-----------VIGSYHNIFRIGT-------MLQN 120
           E Y          C RVL PNG L             + +++              +L+N
Sbjct: 60  ENYLIEMLQVWRECERVLTPNGKLVINTPLMPMLKKDMNTHYTRHIFDLNSDIQQTILKN 119

Query: 121 LNFWILNDIVWRKSNPM--------PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
            N ++++  +W ++N          P  R    QN  E +       K    +       
Sbjct: 120 TNLFLMDTYLWNRTNSSKKLMFGSYPYPRNFYAQNTTEFVTIYVKDGKPNKVSDEIKEKS 179

Query: 173 AANEDVQ---MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
              +       +  W IPI + ++         +H    PE +  R++   +  GD +LD
Sbjct: 180 KLTQQEWVEFTKQIWDIPIPNKNDLAFG-----VHSAIMPEEIPRRLIKLYSFYGDTVLD 234

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           PF GSGT+  VAK+L R +IG E+ + Y +I   ++   
Sbjct: 235 PFAGSGTTLKVAKELGRKYIGFELMEKYSEIIDLKLRDA 273


>gi|71279759|ref|YP_267259.1| hemagglutinin associated protein [Colwellia psychrerythraea 34H]
 gi|71145499|gb|AAZ25972.1| haemagglutinin associated protein [Colwellia psychrerythraea 34H]
          Length = 230

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 106/254 (41%), Gaps = 30/254 (11%)

Query: 21  DKII-KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + II + +++  L+ LP +S+DL+  DPPY      +       L  + + S + F  F 
Sbjct: 4   NFIISQSDAVDFLKSLPDESLDLVITDPPYESLEKHRKIGTTTRLKHSKSSSNNWFEIFP 63

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
             ++      +   R LK N   +++      F +  + ++  F     IVW K   M  
Sbjct: 64  --NSRFEELFIEIYRTLKNNTHFYLLCDQETAFIVKPIAESCGFKFWKPIVWDK---MKI 118

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
             G  ++  +E +++     +                      +  IP      R+    
Sbjct: 119 GMGYHYRARYEFILFFEKGKRKLN-------------------NLAIPDVLQVPRVY--- 156

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
             + +PT+KP AL+  ++  ST+ G +I DPF GSG+ G  A  L R F G ++  D ++
Sbjct: 157 --RGYPTEKPVALMDILIEQSTEKGFLICDPFMGSGSVGVSALSLSRKFYGNDLSIDSLN 214

Query: 260 IATKRIASVQPLGN 273
               RI +++   +
Sbjct: 215 HTIDRIKNIEETPD 228


>gi|88706703|ref|ZP_01104405.1| DNA methylase N-4/N-6 [Congregibacter litoralis KT71]
 gi|88699024|gb|EAQ96141.1| DNA methylase N-4/N-6 [Congregibacter litoralis KT71]
          Length = 438

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 58/267 (21%), Positives = 116/267 (43%), Gaps = 19/267 (7%)

Query: 21  DKIIKGNSI-----SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
            +++ G+S+     +VL  +   +  L  +DPPYN+   G +   D +       +  + 
Sbjct: 168 HRVMCGSSLCPEQIAVL--MSGATATLHISDPPYNVPTQGHISVGDDAGHGDFAMAAGEM 225

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
           +  E +  F R  LL    V       ++   + +I  +   +  +   ++N  VW K+N
Sbjct: 226 TP-EEFTDFLRQSLLGLSSVCGNGSLHYIFMDWRHIRELLEAVDTVYAHLINLCVWAKTN 284

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
                 G  +++ HE +  A       G   + + ++         + W     +    +
Sbjct: 285 GG---MGSFYRSQHELIAVAKK-----GSEPHINNVQLGANGRYRTNVWRYAGMNTFS-V 335

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
             ++   +HPT KP A++   ++ ++  GDI+LD F GSGT+   A++  R   G+E+  
Sbjct: 336 DREETLAVHPTVKPTAMIIDAILDASNLGDIVLDGFLGSGTTLLAAEQTGRVCRGMELDP 395

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGK 282
            Y D+A +R  ++   GN  +   +GK
Sbjct: 396 RYADVAIRRWEALT--GNHAIHEASGK 420


>gi|61805940|ref|YP_214300.1| putative N6A methyltransferase [Prochlorococcus phage P-SSM2]
 gi|61374449|gb|AAX44446.1| putative N6A methyltransferase [Prochlorococcus phage P-SSM2]
 gi|265525147|gb|ACY75944.1| conserved hypothetical protein [Prochlorococcus phage P-SSM2]
          Length = 306

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 67/309 (21%), Positives = 108/309 (34%), Gaps = 69/309 (22%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAYDAFTRAWLL 90
           + ++  KSVDL+  DPPYN+  +      D          +  K  S  +Y  + +   +
Sbjct: 1   MREVEDKSVDLVLIDPPYNIAKD------DWDNFGVTKKGYQPKEYSGVSYYEWMQEVFI 54

Query: 91  ACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-----NLNFWILNDIVWRKSNPMPNFRG--- 142
              RVLK +G+ W     HN FR+   L      N N    N IVW K        G   
Sbjct: 55  EIDRVLKDSGSFWFF---HNDFRMMAELDRRITDNTNLEYRNFIVWNKLFSGCKQEGFLN 111

Query: 143 --------RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ--------MRSDWLI 186
                     FQ   E +++ +              L   + D+           + W  
Sbjct: 112 GFVQVEGLNNFQKMAEYILFYTKKNLHLKLRERRLELGVKSSDISKEILSKTGNVTGWYS 171

Query: 187 PICSGSERLRNK-----------------------------------DGEKLHPTQKPEA 211
            I +G      +                                     +  H T KP  
Sbjct: 172 NIETGKNYPTKETIKPITKHLGFTLDDLVPKFYNQRTHHSVWQYDFDSKKMGHLTPKPIE 231

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           LL  +++  T  GD +LD F GSG++     +  R +I IE ++ Y++I+ +RI +  P+
Sbjct: 232 LLKNVILHCTDEGDTVLDCFGGSGSTAVACIETNRDYILIEREEKYVNISKERIQNAVPV 291

Query: 272 GNIELTVLT 280
             +  T L 
Sbjct: 292 EEVAHTQLN 300


>gi|303245319|ref|ZP_07331603.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio fructosovorans
           JJ]
 gi|302493168|gb|EFL53030.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio fructosovorans
           JJ]
          Length = 445

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 55/269 (20%), Positives = 100/269 (37%), Gaps = 37/269 (13%)

Query: 20  KDKIIKGN---SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G+   S  +   L  +  +L   DPPYN+ + G+  +  +  +           
Sbjct: 166 RHRLLCGDATSSTDLAALLGEERPELAVTDPPYNVAVEGKAGKILNDNMGET-------- 217

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
              A+  F      A   VL     ++V  S               F +   ++WRK+  
Sbjct: 218 ---AFREFLGRAFAALFEVLADGAAVYVAHSETEGLTFRESFLAAGFKLAGCLIWRKNVH 274

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTF--------------------NYDALKAANE 176
           +       +Q  HE +++         +                              N 
Sbjct: 275 VLGRSDYHWQ--HEPILYGWKPTGRHAWFGGRRQTTLLEALPGAVLLDDGRVQIPAGDNV 332

Query: 177 DVQMRSDWLIPICSGSERLRNKD-GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
            +    D  + I  GS    +K      HPT KP ALL R + +S++PGD+++DPF GSG
Sbjct: 333 YLVSGQDLSVEIAPGSIISVDKPPRSDAHPTMKPVALLERFIRNSSRPGDLVIDPFGGSG 392

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           ++    + L RS   +E+   + D+  +R
Sbjct: 393 STFMACEGLGRSCRTLELDPRFCDVIVRR 421


>gi|226313135|ref|YP_002773029.1| hypothetical protein BBR47_35480 [Brevibacillus brevis NBRC 100599]
 gi|226096083|dbj|BAH44525.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 432

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 96/261 (36%), Gaps = 28/261 (10%)

Query: 20  KDKIIKGNSIS------VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           +  ++ G+S S      +++ + A    L+  DPPYN+              D      +
Sbjct: 173 RHLLMCGDSTSRHDVQVLMDGVKAA---LVVTDPPYNVAFK---SDSSELAADGRASIMN 226

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                E ++ F          ++     ++V           T +      +    VW K
Sbjct: 227 DDMPMEQFEEFLGYTFQNYSDLMDDKAAIYVFHPSSYQREFETKMNEAGIVVRTQCVWVK 286

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN------EDVQMRSDWLIP 187
           +     F   +F+  HE + +A    +A  +  +              E  +  S W   
Sbjct: 287 NAATFGFAQYKFK--HEPVFYAHLKGQAPAWYGDRKQTTVWRSGGLLGEQQEPNSVW--- 341

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                E  R    + +HPTQKP  LL+  + +S++  DI++D F GSG++    +++ R 
Sbjct: 342 -----EVSRGDVSKYVHPTQKPLELLAIPISNSSQKNDIVVDLFGGSGSTLMTCEQMGRI 396

Query: 248 FIGIEMKQDYIDIATKRIASV 268
              +E+   + D+  +R    
Sbjct: 397 CRTMELDPKFCDVIKRRFLEA 417


>gi|260580772|ref|ZP_05848598.1| DNA methylase [Haemophilus influenzae RdAW]
 gi|1171051|sp|P43871|MTH3_HAEIN RecName: Full=Modification methylase HindIII; Short=M.HindIII;
           AltName: Full=Adenine-specific methyltransferase HindIII
 gi|290943|gb|AAA61959.1| HindIII modification methyltransferase [Haemophilus influenzae]
 gi|260092589|gb|EEW76526.1| DNA methylase [Haemophilus influenzae RdAW]
 gi|301170147|emb|CBW29751.1| modification methylase hindiii (ec 2.1.1.72) (adenine-specific
           methyltransferase hindiii) (m.hindiii) [Haemophilus
           influenzae 10810]
          Length = 309

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 62/294 (21%), Positives = 102/294 (34%), Gaps = 48/294 (16%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ--LYRPDHSLVDAVTDSWDKFSSF 78
           D I   +SI  ++KL + S+  I +D PY +  +    L+   +S +   + +  K S F
Sbjct: 3   DCIYNSDSIFEIKKLDSNSIHAIISDIPYGIDYDDWDILHSNTNSALGGTSSAQHKTSLF 62

Query: 79  ------------------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
                             + Y  +  +W     RVLK   +++V        R+    +N
Sbjct: 63  KRRGKPLNGWSEADKKRPQEYQEWVESWSNEWFRVLKSGSSVFVFAGRQFAHRVVVAFEN 122

Query: 121 LNFWILNDIVWRKSNP-------------------MPNFRGRRFQNAH---ETLIWASPS 158
             F   + + W K                         + G R  N     E ++W    
Sbjct: 123 SGFTFKDMLSWEKDKAPHRAQRISCVFERRGDIANTNKWVGWRVANLRPLFEPILWFQKP 182

Query: 159 PKA------KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
            K               A    +          +   +  +     + +  H  QKP  L
Sbjct: 183 YKTGSTLADNLIKHEVGAWNENSLTHWNIQQGALNHSNILKVRITSEDKGYHVAQKPLNL 242

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           +  ++   TK   I+LDPF GSGT+   AK+L R FIG E      +IA  R+ 
Sbjct: 243 MKLLIDLVTKEEQIVLDPFAGSGTTLLAAKELNRHFIGYEKNNGIYNIAVNRLG 296


>gi|291460777|ref|ZP_06600167.1| DNA (cytosine-5-)-methyltransferase [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291416736|gb|EFE90455.1| DNA (cytosine-5-)-methyltransferase [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 292

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 59/294 (20%), Positives = 99/294 (33%), Gaps = 44/294 (14%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           ++ +   +S   L  +   SV LI   PPY    N + YR   + +  + D       ++
Sbjct: 3   QNVLFHADSRD-LSFIKDGSVHLILTSPPYF---NLKEYRRGDNQLGIIND-------YQ 51

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR--------------IGTMLQNLNFWI 125
            +          C RVL P G +  +     + R              I    + + F  
Sbjct: 52  QFVDELEKVWKECYRVLVPGGRIVCVVGDVCLSRRKYGRHVVMPLHSDIAVSCRRIGFDN 111

Query: 126 LNDIVWRKSN-------------PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
           LN I+W K +               P       +N  E ++        +  T       
Sbjct: 112 LNPILWHKISNAAFEANTNSSILGKPYEPNAIIKNDMEYILMERKPGGYRKPTEQQREKS 171

Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
             +++      W   I      +        HP   P  L +R++   +   D++LDPF 
Sbjct: 172 KIDKEDFQS--WFTQIWE----MPGASTRNGHPAPFPLELATRLVKMFSFVDDVVLDPFC 225

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
           GSGT+   A    RS +G+E ++ Y      RI   + L +I          EP
Sbjct: 226 GSGTTMLAAINEGRSAVGVEAEEYYCRYTLDRIEKEKTLFHIYDVHYYDISKEP 279


>gi|75909223|ref|YP_323519.1| DNA methylase N-4/N-6 [Anabaena variabilis ATCC 29413]
 gi|75702948|gb|ABA22624.1| DNA methylase N-4/N-6 [Anabaena variabilis ATCC 29413]
          Length = 301

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 64/318 (20%), Positives = 113/318 (35%), Gaps = 68/318 (21%)

Query: 1   MSQKNSLAINENQNSIFEWKDK---IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQL 57
           M+ + +  I E  N I  +  +   +  G+ + +++ +P  SV+LI   PP+ L    + 
Sbjct: 1   MNSQQTTTI-ELTNFIPSYTQQHGAVYLGDCLEIIKSIPDNSVNLILTSPPFALTRKKEY 59

Query: 58  YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW-----------VIG 106
                              S E Y  +   +    +RVL  NG+              + 
Sbjct: 60  GN----------------ESAEKYIEWFLPFADEFKRVLAENGSFILDLGGAYLPGNPVR 103

Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF------RGRRFQNAHETLIWASPSPK 160
           S +    +  + + + F++  +        +P        R  R ++A   + W S +P 
Sbjct: 104 SIYQYELLVRLCKEVGFFLAQEFYHYNPARLPTPAEWVTIRRVRVKDAVNIVWWLSKTPN 163

Query: 161 --------------------AKGYTFNYDALKAANEDVQMRSD-WLIP----------IC 189
                                KGY            D   + +   IP            
Sbjct: 164 PKADNKKILKPYSQSMKRLLKKGYKAQVRPSGHDISDKFQKDNQGAIPPNLLEIANTESN 223

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           S   R     G K HP + P+      +   T  GD++LDPF GS T+G VA+  +R +I
Sbjct: 224 STYLRRCKAAGVKPHPARFPQGFAEFFIKFLTDEGDLVLDPFAGSNTTGFVAETFQRRWI 283

Query: 250 GIEMKQDYIDIATKRIAS 267
            +E+ QDY+  +  R + 
Sbjct: 284 AVEINQDYVLGSRYRFSE 301


>gi|124485590|ref|YP_001030206.1| hypothetical protein Mlab_0768 [Methanocorpusculum labreanum Z]
 gi|124363131|gb|ABN06939.1| DNA methylase N-4/N-6 domain protein [Methanocorpusculum labreanum
           Z]
          Length = 262

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 53/270 (19%), Positives = 93/270 (34%), Gaps = 49/270 (18%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
            + +  +  L    VD+I   PPYN+      Y              D       Y  + 
Sbjct: 1   MDCVEGMSTLTPGMVDVIVTSPPYNIGKAYTTY--------------DDTIPRNTYLKWM 46

Query: 86  RAWLLACRRVLKPNGTLW-VIGSYHNIFRI-----------GTMLQNLNFWILNDIVWRK 133
           R       RVL  +G+ +  IG       I           G +LQN+  WI +  +  +
Sbjct: 47  RTVAEESYRVLSDHGSFYLNIGGSLKDPWIPIDVAQAFREQGFVLQNMIHWIKSIALPDE 106

Query: 134 SNPMPNFR----GRRFQNAHETLIWASPSPKA----------KGYTFNYDALKAANEDVQ 179
                +++     R   + HE +   + +                  N +       D++
Sbjct: 107 GVAAGHYKPINSKRYHNDCHEFIFHFTKNGTVQIDRLATGVPYQDKSNVNRWGGEKRDLR 166

Query: 180 MRSD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILV-SSTKPGDIILDPFFGSGTS 237
            R + W IP  +  E        + HP   P  L    +         +++DPF G G +
Sbjct: 167 DRGNTWFIPYETIRE-------SRPHPATFPIQLPVMCIKDHGLDKCRLVMDPFMGIGNT 219

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
              A +L   FIG E+ + Y  +A +R+++
Sbjct: 220 AIAAIRLGVPFIGFEIDEGYRKVANERVSA 249


>gi|229582710|ref|YP_002841109.1| DNA methylase N-4/N-6 domain protein [Sulfolobus islandicus
           Y.N.15.51]
 gi|228013426|gb|ACP49187.1| DNA methylase N-4/N-6 domain protein [Sulfolobus islandicus
           Y.N.15.51]
          Length = 283

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 58/285 (20%), Positives = 107/285 (37%), Gaps = 41/285 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I G+S + ++++   SV L+   PPY                +A  D  D F S+  Y
Sbjct: 2   RVIFGDSRN-MKEVEDNSVGLVLTSPPY---------------YNAPFDFPDLFPSYADY 45

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGS--------YHNIFRIGTMLQNLNFWILNDIVWRK 133
            +          RVL+       + +        Y  +  +  ++Q+L F     I+W+K
Sbjct: 46  LSLLNGVGKEIFRVLEEGRVAVFVTADVRIHGELYPIVADLIKIMQSLGFKYQERIIWKK 105

Query: 134 SNPM-------------PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
                            P        N +E ++          +          + +   
Sbjct: 106 PEGYIRISRRSGVLIQHPYPLYYYPDNVYEDILVFKKPG---KFIPRNKEESKIDVNKFQ 162

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           R  W + +   +  L N    K +    PE L  RI+   +  GD +LDPF G+ T+  V
Sbjct: 163 REKWYLSVWEITNVLPNNKYSK-YTAPFPEELARRIITLYSYVGDTVLDPFAGTSTTLKV 221

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           A +L+R+ IG E+  +  DI  +RI      G  ++ ++  +  +
Sbjct: 222 ANELKRNAIGYEIDLELKDIILERIGVNTLFGKPQIDIIEREDAK 266


>gi|300741895|ref|ZP_07071916.1| adenine specific DNA methylase [Rothia dentocariosa M567]
 gi|300381080|gb|EFJ77642.1| adenine specific DNA methylase [Rothia dentocariosa M567]
          Length = 402

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 120/297 (40%), Gaps = 43/297 (14%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQL----------------------NGQLYRP 60
           +++ ++++ L +LP+ S  +I+ DPP+N                           +    
Sbjct: 21  VVQADNLAYLSELPSASFTVIYIDPPFNTGKTQTRRTLKTAPAADGEEQGKGNGNRTGFQ 80

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
             S   A+        +FE Y AF    +    R+L  +GTL++   +  +     M   
Sbjct: 81  GKSYTSALQTLASYHDAFEDYWAFLEPRIRQAHRLLTEDGTLYLHLDWREVHYAKVMCDM 140

Query: 121 L--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN--------YDA 170
           +      +N+I+W           +R+   H+ ++    +P+   Y FN        Y A
Sbjct: 141 IFGRDCFINEIIWAYDYGAK--STKRWPTKHDNILMYVKNPQE--YYFNADAVDREPYMA 196

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
                E+   R      +   +        +  +PTQKP  LL R++ +S++PGD +LD 
Sbjct: 197 PGLVTEEKAARGKLPTDVWWHTIVSPTGKEKTGYPTQKPLGLLKRMIAASSRPGDWVLDF 256

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
           F GSGT+GA A  L R F+ ++     I++  KR+       N++       R  PR
Sbjct: 257 FAGSGTTGAAAAALGRKFVCVDQNPPAIEVMAKRL-------NVDAESFADYRGVPR 306


>gi|147669683|ref|YP_001214501.1| DNA methylase N-4/N-6 domain-containing protein [Dehalococcoides
           sp. BAV1]
 gi|146270631|gb|ABQ17623.1| DNA methylase N-4/N-6 domain protein [Dehalococcoides sp. BAV1]
          Length = 733

 Score =  132 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 65/352 (18%), Positives = 122/352 (34%), Gaps = 79/352 (22%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK----------SVDLIFADPPYNLQ 52
           Q +  + +     +  W +K+I G++  +L  L              + LI+ DPP+++ 
Sbjct: 73  QPDMFSFDSRGRQLKGWTNKLIWGDNKLILSSLKNGPLREEIERQGGIKLIYIDPPFDVG 132

Query: 53  LNGQ----------LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL 102
            +              +P+     A  D+W K +  +++ +     L+  R +L  +G++
Sbjct: 133 ADFSMDIEIGEDTFTKKPNVLEEIAYRDTWGKGT--DSFISMIYERLVLMRDLLAKDGSI 190

Query: 103 WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP--- 159
           +V   +     +  +L  +    +N  +      M    G+ F  +HET++         
Sbjct: 191 YVHCDWRVNSYLKLVLDEVFSGFVNTEIIWICGLMG--SGKVFPKSHETILLYRKQNSIF 248

Query: 160 ------------------------------------KAKGYTFNYDALKAANEDVQMRSD 183
                                                 K Y     +        +   +
Sbjct: 249 NMPLRLGLSPRITNALQKDNEGWFYTRGQESSGGKNWLKSYISKEVSFSKEKAIEEANQN 308

Query: 184 WLIPICSGSE----------------RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
              P                             +  +PTQKPEALL RI+ +S+  GD++
Sbjct: 309 RPQPAWDVWIGKKELAKAFNDFPVGTYAYTDQEKVGYPTQKPEALLERIIKASSNEGDLV 368

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
            D F GSGT+ AVA+KL R +I  ++ +  +    KR+  VQ     E    
Sbjct: 369 ADFFCGSGTTAAVAEKLGRKWIATDLGKFAVHTTRKRMIGVQRQLKAENKDF 420


>gi|83590061|ref|YP_430070.1| site-specific DNA-methyltransferase (adenine-specific) [Moorella
           thermoacetica ATCC 39073]
 gi|83572975|gb|ABC19527.1| Site-specific DNA-methyltransferase (adenine-specific) [Moorella
           thermoacetica ATCC 39073]
          Length = 470

 Score =  132 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 63/264 (23%), Positives = 113/264 (42%), Gaps = 30/264 (11%)

Query: 21  DKIIKGNSISVLEKLPA----KSVDLIFADPPYNLQLN--------GQLYRPDHSLVD-- 66
           + +I+G+++  ++ L        + LI+ DPP+  Q N        G     +  +++  
Sbjct: 57  NLLIQGDNLQAMQGLLDRGYEGKIHLIYIDPPFFSQDNYSHRVPLAGTAAGQERRVIERA 116

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
           A  D+W      +AY       L   +R+L  NG+++V               +   + +
Sbjct: 117 AYRDTW--RGGIDAYLDMLYPRLQLMKRLLASNGSIYVHLDASISHYNWVRNHDTLLFYV 174

Query: 127 NDIVWRKSNP--MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
            D      N   +P   G R + + ET        K KGY  + D   A   + +++ + 
Sbjct: 175 RDPARFTFNKEYLPYPPGYRRRGSRET--------KGKGYPLD-DVWNANPFEFELKGEE 225

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
            +         R K G     TQK  +LL RI+ +S+ PGD++ D F GSGT+   A+ L
Sbjct: 226 SLDSIQIKSFSREKTG---FATQKNLSLLRRIIKASSNPGDLVADFFCGSGTTLVAAEAL 282

Query: 245 RRSFIGIEMKQDYIDIATKRIASV 268
            R ++G E+    + +A KR+ + 
Sbjct: 283 DRKWLGCEIGWTGLQVARKRLVAA 306


>gi|260583020|ref|ZP_05850802.1| DNA methylase [Haemophilus influenzae NT127]
 gi|260093871|gb|EEW77777.1| DNA methylase [Haemophilus influenzae NT127]
          Length = 310

 Score =  132 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 62/294 (21%), Positives = 101/294 (34%), Gaps = 48/294 (16%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ--LYRPDHSLVDAVTDSWDKFSSF 78
           D I   +SI  ++KL + S+  I +D PY +  +    L+   +S +   + +  K S F
Sbjct: 3   DCIYNSDSIFEIKKLDSNSIHAIISDIPYGIDYDDWDILHSNTNSALGGTSSAQHKTSLF 62

Query: 79  ------------------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
                             + Y  +  +W     RVLK   + +V        R+    +N
Sbjct: 63  KRRGKPLNGWSEADKKRPQEYQEWVESWSNEWFRVLKSGSSAFVFAGRQFAHRVVVAFEN 122

Query: 121 LNFWILNDIVWRKSNP-------------------MPNFRGRRFQNAH---ETLIWASPS 158
             F   + + W K                         + G R  N     E ++W    
Sbjct: 123 SGFTFKDMLSWEKDKAPHRAQRISCVFERRGDIANTNKWVGWRVANLRPLFEPILWFQKP 182

Query: 159 PKA------KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
            K               A    +          +   +  +     + +  H  QKP  L
Sbjct: 183 YKTGSTLADNLIKHEVGAWNENSLTHWNIQQGALNHSNILKVRITSEDKGYHVAQKPLNL 242

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           +  ++   TK   I+LDPF GSGT+   AK+L R FIG E      +IA  R+ 
Sbjct: 243 MKLLIDLVTKEEQIVLDPFAGSGTTLLAAKELNRHFIGYEKNNGIYNIAVNRLG 296


>gi|219851568|ref|YP_002466000.1| DNA methylase N-4/N-6 domain protein [Methanosphaerula palustris
           E1-9c]
 gi|219545827|gb|ACL16277.1| DNA methylase N-4/N-6 domain protein [Methanosphaerula palustris
           E1-9c]
          Length = 294

 Score =  132 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 102/232 (43%), Gaps = 19/232 (8%)

Query: 22  KIIKGNSIS-VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
               G+ IS     +P  SVDLI  DPPY +  + +L+R  +     V D + +    E 
Sbjct: 10  TFYHGDCISGAAAAIPDNSVDLIITDPPYGINGD-KLHRHYNRNEAFVVDGYIEIPQSE- 67

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  F+  W+    RVL+P G+++++  Y N+  I   L+  +   +N I+W+ S  +  F
Sbjct: 68  YADFSVNWIREAERVLRPGGSIYIVSGYTNLVDILNALRGTSLTEVNHIIWKYSFGV--F 125

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD-------WLIPICSGSE 193
             ++F ++H  +++       + +                  +       W+I       
Sbjct: 126 TRQKFVSSHYHILFYEKPGGRRTFNLESRFGLVEKTGDGRSCNNADREDVWVINREYKPS 185

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +++NK+       + P  LL++++  S+  GD++ D F G  ++  VA  L 
Sbjct: 186 QVKNKN-------ELPFKLLAKMIQYSSNEGDLVADFFLGGFSTAKVAIGLN 230


>gi|126461424|ref|YP_001042538.1| nuclease [Rhodobacter sphaeroides ATCC 17029]
 gi|126103088|gb|ABN75766.1| ParB domain protein nuclease [Rhodobacter sphaeroides ATCC 17029]
          Length = 459

 Score =  132 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 57/273 (20%), Positives = 102/273 (37%), Gaps = 46/273 (16%)

Query: 21  DKIIKGNSISVLEKLPA-------KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
            +++ G+S     KL         +S+D  + DPPYN+   G   +  +   D + D+  
Sbjct: 176 HRVMCGDST----KLADVEALCGGESIDACWTDPPYNVDYKGAAGKIAN---DNMADA-- 226

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                 A+  F +A  L+   VL+    ++V  +           +   F +   +VW  
Sbjct: 227 ------AFREFLQAAFLSAFAVLRSGAPIYVAHADTEGENFRGAFREAGFKLSGCLVWV- 279

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF---NYDALKAANEDVQMRSDWLIPICS 190
             P        +Q  HE +++      A  +           A     +++ D  + + S
Sbjct: 280 -KPSLVLGRSDYQWRHEPILYGWKPGAAHAWFGGRARTTVFDAGEVPFEVQLDGSVHVKS 338

Query: 191 GSE-------------------RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
           G +                   R         HPT KP  L+  +LV+ST+ GD +LD F
Sbjct: 339 GGQTFVIRGEALTVEAVEGSVIRAEKPKKSVEHPTMKPVGLVRDMLVNSTRRGDSVLDLF 398

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            GSG++     K+ R    +E    + D+  +R
Sbjct: 399 GGSGSTLIACHKVGRVARLMEFDPKFADVIVRR 431


>gi|116486911|emb|CAH64697.1| DNA methylase [Wolbachia endosymbiont of Drosophila yakuba]
          Length = 404

 Score =  132 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 91/247 (36%), Gaps = 34/247 (13%)

Query: 21  DKIIKGNS--ISVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +I  G+S  +   + L      D+   DPPYN+       R D  +++           
Sbjct: 163 HRIYCGDSSLVESYKALLDDKMADITVCDPPYNVDYVSSQEREDKKILNDNQG------- 215

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E Y+ F            K  G +++  S      +  + +         I+W K++  
Sbjct: 216 -EKYELFLYDICSNILAYTK--GAIYICTSSSEFSTLQKVFEEAGGRWSTFIIWAKNHFT 272

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                   Q  +E +++   S   + +                   W     +       
Sbjct: 273 LGRSDY--QRQYEAMLYGWKSGNKREWH----------GGRNQSDLWFYDKPT------- 313

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
                LHPT KP  L+ + +V+S++ GDI+LDPF GSG++    ++  R    IE+   +
Sbjct: 314 --HNTLHPTMKPVELMGKAIVNSSRSGDIVLDPFSGSGSTLIACERTGRICRTIELDSKF 371

Query: 258 IDIATKR 264
           +D+  KR
Sbjct: 372 VDVTIKR 378


>gi|269119459|ref|YP_003307636.1| DNA methylase N-4/N-6 domain protein [Sebaldella termitidis ATCC
           33386]
 gi|268613337|gb|ACZ07705.1| DNA methylase N-4/N-6 domain protein [Sebaldella termitidis ATCC
           33386]
          Length = 302

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 61/294 (20%), Positives = 108/294 (36%), Gaps = 52/294 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG-----------------QLYRPDHSL 64
           K+  GN++S+++K+   S+  I   PPY    +                  +L +  ++ 
Sbjct: 2   KLYHGNAVSLIDKIKDNSIQSIITSPPYFCLRDYEYPQQIGLEDQVEDYLTKLIQIWNTA 61

Query: 65  VDAVTDSWDKFSSFEAYDAF-----TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT--- 116
            + + D    F + +    +     T+ W +      +P   +     Y     +     
Sbjct: 62  KNKLKDDGLLFINIDDTYYYPRPGETKIWGMNANGDKRPG--IKKHNEYRKSSLMAVPQK 119

Query: 117 ---MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
               +    +     I+W+K N MP     RF   +E +   S    ++ Y FN      
Sbjct: 120 LIIKMIESGWIFRQQIIWQKPNCMPESTTSRFTRDYEAIFMFSK---SENYKFNQLKEDM 176

Query: 174 ANED-------------------VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
             ED                      ++++   + S             H    P  L  
Sbjct: 177 KTEDLSNPRGSNGTTKQSGRRNEENKKTEYTRNMRSVWSINNVCSSNNNHYATFPAELAR 236

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           R+++ ST   D +LDPF GSGT+  VAK+L R  IGIE+   Y+++A K I  +
Sbjct: 237 RLILCSTDEKDTVLDPFSGSGTTLKVAKQLNRHGIGIEINSKYVELAEKNINDL 290


>gi|284165403|ref|YP_003403682.1| DNA methylase N-4/N-6 domain protein [Haloterrigena turkmenica DSM
           5511]
 gi|284015058|gb|ADB61009.1| DNA methylase N-4/N-6 domain protein [Haloterrigena turkmenica DSM
           5511]
          Length = 370

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 58/283 (20%), Positives = 104/283 (36%), Gaps = 27/283 (9%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDKF 75
            E   ++  G+S   L  +   SV+L+   PPY  +++   L+      V    ++ D  
Sbjct: 1   METTHRVFVGDSRD-LAAIDDDSVELVVTSPPYPMIEMWDDLFTRLDPAVGDALEAGDGR 59

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLW------------VIGSYHNIFRIGTMLQNLNF 123
            +F+A  A          RVL   G                   Y N  R+    ++  F
Sbjct: 60  RAFDAMHAQLDRVWDELERVLVDGGIACINVGDATRSVDDSFRVYANHARVLEAFESRGF 119

Query: 124 WILNDIVWRKS-NPMPNFRGR-------RFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
             L DI+WRK  N    F G             HE ++      +++ +    D    A 
Sbjct: 120 DPLPDILWRKPANSAAKFMGSGMIPPNAYVTLEHEYVLVFRKGGESRSFEPGADRRYEAA 179

Query: 176 EDVQMRSDWLIPICSGSER-----LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
              + R+ W   + +             D  +      P  +  R++   +  GD +LDP
Sbjct: 180 YFWEERNRWFSDVWTDVRGELQALSDEHDDLRDRSAAYPLEIPYRLICMYSAYGDTVLDP 239

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           F+G+GT+   A    R+ +G E++  ++++   R+  V  L  
Sbjct: 240 FWGTGTTTLAAMYAGRNSVGSELESSFLEVFDDRLGDVPALSR 282


>gi|85715779|ref|ZP_01046758.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
           Nb-311A]
 gi|85697432|gb|EAQ35311.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
           Nb-311A]
          Length = 426

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 61/248 (24%), Positives = 108/248 (43%), Gaps = 16/248 (6%)

Query: 21  DKIIKGNSI--SVLEK-LPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            ++  G+S     L++ +  K  VD  F DPPYN+++ G           A+       +
Sbjct: 175 HRVGCGDSRDAEFLQRVIGDKKRVDAAFLDPPYNVRIGGHAVAAGSHREFAMASGEMNEA 234

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            F ++ A T   L A   V +     +V   + ++  +  +   +    LN  VW KSN 
Sbjct: 235 EFRSFLADT---LGAAASVSRDGAVHFVCMDWRHMDSVSAVGATVYGACLNLCVWNKSNA 291

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
                G  +++ HE +          G   + + ++         + W     + S R  
Sbjct: 292 G---MGSLYRSKHELVFVYRV-----GMAPHLNMVELGKHGRNRTNVWDYASVN-SMRGS 342

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
            ++   LHPT KP  L++  L   T+ GD++LD F GSGT+   A++  R F G+++   
Sbjct: 343 RREDLALHPTVKPTGLVADALKDVTRHGDLVLDLFLGSGTTLIAAERTGRCFRGLDIDPA 402

Query: 257 YIDIATKR 264
           Y+D+A +R
Sbjct: 403 YVDVAIER 410


>gi|75675738|ref|YP_318159.1| DNA methylase N-4/N-6 [Nitrobacter winogradskyi Nb-255]
 gi|74420608|gb|ABA04807.1| DNA methylase N-4/N-6 [Nitrobacter winogradskyi Nb-255]
          Length = 470

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 63/274 (22%), Positives = 104/274 (37%), Gaps = 19/274 (6%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +I  G+S     V   L  +   L+  DPPY ++ +     P       VT      +
Sbjct: 197 RHRITNGDSTNPEDVARVLAGRVPHLMVTDPPYGVKYD-----PAWRQAAGVTSK--DAA 249

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           + +  +     W  A          +W  G+Y     +   L    F I   IVW K   
Sbjct: 250 TGKVLNDDRADWREAWELFPGDVAYIWHAGAYCGD--VANSLTACRFKIRAHIVWVKQRH 307

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN--EDVQMRSDWLIPICSGSER 194
           +       FQ  HE   +A      + + F  +   A     D +          S    
Sbjct: 308 VLGRGDYHFQ--HEPCFYAVKEGADERWHFVPEHEVATYTVRDGERGHYEGGRKQSTVWN 365

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           + +   E  H TQKP   + R + ++++PG+++ +PF GSGT+   A+   R    IE+ 
Sbjct: 366 IEHVKSETGHGTQKPVEAMKRPIENNSQPGEMVYEPFSGSGTTLIAAEITGRKCFAIELN 425

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
             Y+D+A KR    Q    +  T+ +  RT   V
Sbjct: 426 PLYVDVAVKRW---QQFTGLVATLESDGRTFDDV 456


>gi|317010048|gb|ADU80628.1| type IIS restriction enzyme M2 protein (mod) [Helicobacter pylori
           India7]
          Length = 287

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 69/289 (23%), Positives = 117/289 (40%), Gaps = 44/289 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +K+   +S + + ++P  SVDLI   PPY N++   +    D        +       +E
Sbjct: 4   NKVFYHSSTN-MNEVPDNSVDLIITSPPYFNIKDYAKNGTQDLQHSTQHVEDLGALEKYE 62

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVI-----------GSYHNIFRIGT-------MLQNL 121
            Y        L C RVLKPNG L +             +++N             +L +L
Sbjct: 63  DYLLGLLKVWLECYRVLKPNGKLCINVPLMPMLKKVLNTHYNRHIFDLHADIQHSILHDL 122

Query: 122 N--------FWILNDIVWRKSNP--------MPNFRGRRFQNAHETLIWASPSPKAKGYT 165
           N         ++L+  +W++ NP         P  R    QN  E +       K K  T
Sbjct: 123 NNTLENKPKMFLLDVYIWKRVNPTKRLMFGSYPYPRNFYAQNTIEFIGVFVKDGKPKQPT 182

Query: 166 FNYDALKAANEDVQ---MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK 222
                     ++      +  W IPI + ++    K     H    P  L  R++   + 
Sbjct: 183 EEQKEQSQLTQEEWVEFTKQIWEIPIPNKNDIAFGK-----HAALMPAELARRLIRLYSC 237

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
            GD++LDPF GSGT+   AK L+R+FIG E+ ++Y  +  +++ ++   
Sbjct: 238 VGDVVLDPFSGSGTTLREAKLLKRNFIGYELYENYKPLIEQKLGNLFDF 286


>gi|320159453|ref|YP_004172677.1| putative N-4 cytosine-specific methyltransferase [Anaerolinea
           thermophila UNI-1]
 gi|319993306|dbj|BAJ62077.1| putative N-4 cytosine-specific methyltransferase [Anaerolinea
           thermophila UNI-1]
          Length = 278

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 58/268 (21%), Positives = 97/268 (36%), Gaps = 39/268 (14%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
                K+I G+S++ + ++P +SV L+   PPY                +A  D    +S
Sbjct: 1   MSTNHKLIIGSSVN-MPEIPDESVHLVVTSPPYF---------------NAPFDYKGLYS 44

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGS--------YHNIFRIGTMLQNLNFWILND 128
           S++ Y    +       RVL       +           +  +     +  +  F   + 
Sbjct: 45  SYQNYLEMLKQVAREAYRVLANGRIFVLNIDDMLVDGEKFPIVADATRIFLDAGFRYRDR 104

Query: 129 IVWRKSNPMPNFRGRRF---QNAHE-----------TLIWASPSPKAKGYTFNYDALKAA 174
           I+W+K         R     QN +             +I+       K    +       
Sbjct: 105 IIWKKPEGYLRISRRSGVLLQNPYPMYFYPDNLLESIIIFQKGRFDYKSVPQDVREASKI 164

Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
           N      + W + +      L N   EK      PE L  R +   +  G+ +LDPF GS
Sbjct: 165 NIKEFQENKWYMTLWEMVNVLPNSPLEKD-IAAFPEELPYRCIQLFSYVGETVLDPFCGS 223

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           GT+  VA++L R+ IGIE+ +  I I T
Sbjct: 224 GTTMKVARQLGRNSIGIEINEALIPIIT 251


>gi|284048425|ref|YP_003398764.1| DNA methylase N-4/N-6 domain protein [Acidaminococcus fermentans
           DSM 20731]
 gi|283952646|gb|ADB47449.1| DNA methylase N-4/N-6 domain protein [Acidaminococcus fermentans
           DSM 20731]
          Length = 416

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 96/251 (38%), Gaps = 31/251 (12%)

Query: 20  KDKIIKGNSI--SVLEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K +++ G+S      EKL      +L+  DPPY + L     +  +          D  +
Sbjct: 168 KHRVLCGDSTKPESYEKLLDGVKPNLVLTDPPYLVNLQSTSGKIKN----------DDLN 217

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E Y  F +        V+  + +++V  +           ++  F +   ++W+K   
Sbjct: 218 DQEGY-EFLKKAFSCFHDVMAQDASIYVFYATMKARVFYDAFEDAGFKVGAGLIWKKPKA 276

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
            P  R     N    +       K   Y            D + ++ +       S    
Sbjct: 277 -PFMRTDWKFNMEPIIFGWRKDGKHNWY-----------GDQKQKAVFEFDGIKNS---- 320

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
            K+    HP+ KP  +L+ ++  S++   ++LD F GS ++     +L R   G+E++  
Sbjct: 321 -KEDGFGHPSSKPVPMLAYLIKLSSQINGVVLDGFLGSASTLMACDQLGRICYGVELEPK 379

Query: 257 YIDIATKRIAS 267
           ++D+A KR  +
Sbjct: 380 FVDVAVKRYLA 390


>gi|312620950|ref|YP_003927880.1| hypothetical protein pBS02_002 [Bacillus sp. BS-02]
 gi|307543258|gb|ADN44272.1| hypothetical protein [Bacillus sp. BS-02]
          Length = 571

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 117/291 (40%), Gaps = 50/291 (17%)

Query: 13  QNSIFEWKDK---IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           ++ I ++ D+   IIKGN++  L  L       + +I+ DPPYN   +   Y        
Sbjct: 167 KHDIDDFTDQDNLIIKGNNLIALHSLKERYENKIKMIYIDPPYNTGNDSFKY-------- 218

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL---NF 123
                 DKF +   + AF +  L     +L  +G++++    + +  +  ++  +   N 
Sbjct: 219 -----NDKF-NHSTWLAFVKNRLEIAYSLLSQDGSIYIQIDNNEVHYLKVLMDEIFGENN 272

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP----------------------SPKA 161
           +    I   K           F   HET+++ S                           
Sbjct: 273 FQREIIWVLKGVSGYKSMINNFVRGHETILFYSKSSEFSFNKQYLPYSEAQLKRFTKKDK 332

Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICS---GSERLRNKDGEKLHPTQKPEALLSRILV 218
            G T+            + +   +  +       + + N        TQKPE L+ RI+ 
Sbjct: 333 DGRTYKPITKTRRMYLDEAKGIPISDVWDDIASFQTVVNAQERVGFNTQKPEKLIQRIID 392

Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRIASV 268
           SS+  GDIILD F GS T+ AVA K+ R +IGIE + DYI+ ++  R+  V
Sbjct: 393 SSSNKGDIILDFFMGSSTTQAVAHKMGRQYIGIE-QMDYINTVSVPRLQKV 442


>gi|14590480|ref|NP_142548.1| modification methylase [Pyrococcus horikoshii OT3]
 gi|3256990|dbj|BAA29673.1| 309aa long hypothetical modification methylase [Pyrococcus
           horikoshii OT3]
          Length = 309

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 62/269 (23%), Positives = 97/269 (36%), Gaps = 41/269 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KI+ G S   +E++P  SV L+   PPY                +A  D    FSS+E Y
Sbjct: 10  KIVFG-SSENMEEIPDNSVHLVVTSPPY---------------YNAPFDFPGLFSSYEEY 53

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNI---------FRIGTMLQNLNFWILNDIVWR 132
               R       RVL+P      +     I           I  M+  L F   + I+WR
Sbjct: 54  LNLLRKVGKELMRVLQPGRYACFVTQDVRIEGKLYPIVSDLIHIMVHELGFEYQDKIIWR 113

Query: 133 KSNPM-------------PNFRGRRFQNAHETLIWASPSPKAKG--YTFNYDALKAANED 177
           K                 P        N +E ++      K                +  
Sbjct: 114 KPEGYIRISRRSGVLIQHPYPMYYYPDNIYEEVVIFKKPGKFDRSAVPPEIREKSKISIS 173

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                 W + +      L ++   K +    PE L  R++   +  G+ +LDPF GSGT+
Sbjct: 174 KFQAEKWYLSVWDIKNVLPHEKWSK-YTAPFPEELAERLIRLYSYVGETVLDPFLGSGTT 232

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
             V++KL R+ IG E+  +  +I  +R+ 
Sbjct: 233 CVVSRKLHRNCIGYEIDLELREIIEERLG 261


>gi|206889804|ref|YP_002249010.1| modification methylase [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741742|gb|ACI20799.1| modification methylase [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 684

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 70/379 (18%), Positives = 130/379 (34%), Gaps = 88/379 (23%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEK--------LPA---KSVDLIFADPPY 49
           +  +     +E+     EW++ I+ G+++  L+         +       V LI+ DPP+
Sbjct: 63  LQVEKVFNSDEHPAGDKEWRNMIVFGDNLQFLKTVYENKDPLIKDRVKGKVKLIYIDPPF 122

Query: 50  NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
                    R   +       +         +  F R  L+  R +L  +G+++V   YH
Sbjct: 123 GTGDEYDANRGQKAYSARAKGA--------EFVEFLRRRLILAREILADDGSIFVRQDYH 174

Query: 110 NIFRIGTMLQNLNFW--ILNDIVWRKSNPMPNFRGRRFQNAHETLIWA------------ 155
               +  ++  +      LN+I+  +      F   R+  A++ L W             
Sbjct: 175 FGHYVKVIMDEVFGKENFLNEIIVARITKKG-FGANRYPTANDYLFWYSKTSDYFFKPYR 233

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRS------------DWLI----------------- 186
            P    K    + D++    +  + R              W                   
Sbjct: 234 KPLNSKKEKWHSMDSMSGGRKTGEPRFILGEMRYPPKGRVWTFSQERIFEMEKEGLIKLN 293

Query: 187 ---------------PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
                          P+ S    +        +PT+  E LL RI+ S+T+P D++LD F
Sbjct: 294 SKGRPIYKVLTQEGEPLDSNWTDIPGYSFTTDYPTENSEQLLERIIKSTTQPNDLVLDFF 353

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFN 291
            GSGT+ AVA+KL R +I  ++ +       KRI ++Q   ++E       +        
Sbjct: 354 AGSGTTAAVAEKLGRRWIVCDIGKLAFYTMQKRILTIQDSKDLENPKKKYGKKA------ 407

Query: 292 LLVERGLIQPGQILTNAQG 310
               R  I     L + + 
Sbjct: 408 ----RSFITVNTGLYDLKK 422


>gi|302344011|ref|YP_003808540.1| ParB domain protein nuclease [Desulfarculus baarsii DSM 2075]
 gi|301640624|gb|ADK85946.1| ParB domain protein nuclease [Desulfarculus baarsii DSM 2075]
          Length = 472

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 58/297 (19%), Positives = 101/297 (34%), Gaps = 48/297 (16%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G+S    +V + +  +   L+F  PPY  + +                      
Sbjct: 181 QHRLLCGDSTLAEAVTKVMSGQRAALLFTSPPYGNKRDYTTG------------------ 222

Query: 77  SFEAYDAFTRAWLLAC-----RRVLKPNGTLWVIGSYHNIFR-IGTMLQNLNFWILNDIV 130
               +D   R            +VL   G +     +H  +      ++   +      V
Sbjct: 223 GIADWDGLMRGVFANAPMGQGGQVLVNLGLIHEKNEWHPYWEGWLDWMRGQGWRRFAWYV 282

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA-----------------LKA 173
           W +   +P     RF  +HE +   +   +                           ++ 
Sbjct: 283 WDQGFGLPGDWNGRFGPSHEFVFHFNRQSRRPHKIMPCIHAGEDRDFKSGLRGKDGVVQK 342

Query: 174 ANEDVQMRSDWLIP-ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
            N       +  IP   +   R + +  E  HP   P AL    +++ T P D+  +PF 
Sbjct: 343 WNGKTFQTQESKIPDSVARIFRHQARGIETGHPAVFPVALPEHFMLAFTDPEDVCFEPFS 402

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
           GSGTS   A+K  R    IE+  +Y DIA +R A + P    E   L   RT   V+
Sbjct: 403 GSGTSLVAAQKTGRICQAIELAPEYCDIAIRRFAGLFPQ---ESITLEDGRTFDEVS 456


>gi|257792342|ref|YP_003182948.1| DNA methylase N-4/N-6 domain-containing protein [Eggerthella lenta
           DSM 2243]
 gi|257476239|gb|ACV56559.1| DNA methylase N-4/N-6 domain protein [Eggerthella lenta DSM 2243]
          Length = 237

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 59/262 (22%), Positives = 100/262 (38%), Gaps = 34/262 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I G+   V+ ++   S   +  DPPY +              D + D W    +    
Sbjct: 5   EVIAGDMFDVIGRVEPASCRCVLIDPPYMIG-------TQSVHRDNMIDPWADLMNGA-- 55

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             F R  + A R  L  +G +W+  ++  +  I     +  +   + +VW K  P     
Sbjct: 56  -RFYREVIDAVRPKLTKDGAMWLFMNWRGLPGIYKASCDAKWLPASCMVWSKDWPG---T 111

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G   + +HE  +              Y        + +        +   + R       
Sbjct: 112 GDPLRASHELCLL-------------YTCDGFKRPNAKTLDVQTFKLVPTAHR------- 151

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
            +H  QKP  LL  +L  +T  GD +LD F GSG++G  A  + R F+GIE      ++A
Sbjct: 152 -VHSAQKPVPLLRMMLDFTTARGDKVLDCFCGSGSTGVAAVSMGRRFVGIEANAAIAEVA 210

Query: 262 TKRIASVQPLGNIELTVLTGKR 283
            +RI      G + +T   GKR
Sbjct: 211 RRRIEGEASQGQLFVTSEEGKR 232


>gi|92116412|ref|YP_576141.1| DNA methylase N-4/N-6 [Nitrobacter hamburgensis X14]
 gi|91799306|gb|ABE61681.1| DNA methylase N-4/N-6 [Nitrobacter hamburgensis X14]
          Length = 436

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 56/256 (21%), Positives = 105/256 (41%), Gaps = 32/256 (12%)

Query: 21  DKIIKGNSIS------VLE------KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
            ++I  ++ S      +++       +P +         PYN  +   + R      +  
Sbjct: 169 HRLICADACSRKAYQALMKDCFASVAIPDQ---------PYNDSIVKIVGRGKIKHREFA 219

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
             S +   S E +  F R W+  C    KP    +V   + ++    T    +   + N 
Sbjct: 220 RASGE--LSPEQFVNFQRQWMELCSEFSKPGSIHFVFIDWRHLSEALTAGHAVYSELKNV 277

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
            VW K+N     +G  +++ HE ++         G   + + ++         + W    
Sbjct: 278 AVWCKTNAG---QGSFYRSQHELILVFK-----NGDAPHQNNIELGRHGRNRSNVWTYAG 329

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
            + + R    D   +HPT KP  L+   +   ++ GDI+LDPF GSGT+   A+++ R  
Sbjct: 330 VN-TFRAGRMDDLSVHPTVKPVGLVLDAIKDCSRRGDIVLDPFMGSGTTILAAERVDRRG 388

Query: 249 IGIEMKQDYIDIATKR 264
            GIE+   Y+D+A +R
Sbjct: 389 FGIEIDPLYVDVAIRR 404


>gi|212694808|ref|ZP_03302936.1| hypothetical protein BACDOR_04342 [Bacteroides dorei DSM 17855]
 gi|237710921|ref|ZP_04541402.1| DNA methylase N-4/N-6 [Bacteroides sp. 9_1_42FAA]
 gi|212662662|gb|EEB23236.1| hypothetical protein BACDOR_04342 [Bacteroides dorei DSM 17855]
 gi|229454765|gb|EEO60486.1| DNA methylase N-4/N-6 [Bacteroides sp. 9_1_42FAA]
          Length = 408

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 69/334 (20%), Positives = 121/334 (36%), Gaps = 89/334 (26%)

Query: 22  KIIKGNSISVLEKL-PAKSV----DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           ++   +++ VL  L   +SV    DLI+ DPPYN     +     H+  D  T       
Sbjct: 39  RLYHADNLDVLNSLIKDESVCGKIDLIYIDPPYNTGGAFETRDSKHAYNDNFT------- 91

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGS----YHNIFRIGTMLQNLNFW-------- 124
             E Y  F    L+   ++L P+G+++V       +H    + ++    NF         
Sbjct: 92  -TEGYIKFMEVRLILMHKLLSPSGSIYVHLDSNMVFHIKILMDSIFGEKNFRGMITRKKC 150

Query: 125 ------------ILNDIVWRKSNPMPNFRGRRFQNAHETLI------------------- 153
                       I + I++   +    +     Q   E ++                   
Sbjct: 151 KSKNFTRTTYGNISDYILFYTKSDSAKWNRPYEQWDDEKILKEYPFIEEGTGRRHKRVPC 210

Query: 154 ----------------WASPSPKAKGYTFNYDALKAANEDVQMRSDWL------------ 185
                              P  K   YT +      A  ++   S+              
Sbjct: 211 HAPGTRNGATGGPWRGMMPPEGKHWQYTPDKLDEMDARGEIYWSSNGNPRRKVYLDQSKG 270

Query: 186 IPICSGSERLRNKDGEKLH----PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
           I +        + + +  H    PT+K   +L RI+ SS+ PGDI+LD F GSGT+   A
Sbjct: 271 IAVQDIWLDFLDVNNQNTHLTGYPTEKNIDMLKRIINSSSNPGDIVLDCFAGSGTTLVAA 330

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIAS-VQPLGNI 274
           ++L R +IG+++ ++ I I   R  +  +PLG+ 
Sbjct: 331 EELGRQWIGVDIGEEAIKIIQNRFENGTKPLGDY 364


>gi|86281699|gb|ABC90762.1| probable DNA-methyltransferase protein (hemagglutinin-associated
           protein) [Rhizobium etli CFN 42]
          Length = 201

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/239 (22%), Positives = 97/239 (40%), Gaps = 41/239 (17%)

Query: 29  ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
           ++++++L   SVD I  DPPY ++   +  R   +  +AV               + +  
Sbjct: 1   MTLMQRLQGGSVDFILTDPPYLVRYRDRRGRTVANDNNAV---------------WLKPA 45

Query: 89  LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
                RVLKP         ++++ R     +   F ++  +V+ KS        R     
Sbjct: 46  FAEMHRVLKPGRLAVSFYGWNHVDRFMEAWRKAGFRVVGHLVFVKSYASSQRFVRYH--- 102

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
           HE             Y           + +     W               G ++HPTQK
Sbjct: 103 HEQA-----------YVLAKGDAAPPAQPIADVLPWDY------------TGNRMHPTQK 139

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           P   L +I+ + +KPG+++LDPF GSG++   A +  R ++G+E++  +   A+ R+ S
Sbjct: 140 PLRPLEQIIRAFSKPGELVLDPFCGSGSTLLAAARSGRDYLGMELEHRHQLTASLRVHS 198


>gi|317176841|dbj|BAJ54630.1| adenine-specific DNA methylase [Helicobacter pylori F16]
          Length = 750

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 69/277 (24%), Positives = 113/277 (40%), Gaps = 47/277 (16%)

Query: 22  KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
            +IK  +   L  L     +++D I+ DPP+N          D + +D   DS       
Sbjct: 377 TLIKSENYQALNSLKNRYKETIDCIYIDPPFNTG-------SDFAYIDKFQDS------- 422

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--ILNDIVWRKSNP 136
             + +     L      L P G+ ++    +  +    +L ++       N+I+W  SN 
Sbjct: 423 -TWLSLMHNRLELAYDFLSPQGSFYLHLDNNANYLGRMLLNDIFGKENFRNEIIWYYSNK 481

Query: 137 MPNFRGRRFQN---------AHETLIWASPSP----------------KAKGYTFNYDAL 171
           M N      +N         + + + +    P                  +    N   +
Sbjct: 482 MANSGNSFAKNTETILNYSKSEKYIFYRQKEPRSEPVLLSKREGRDGKNMRARDENGKVI 541

Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
              + +  + + W IPI   +   R K+ E L  TQKPE LL RI+ +S+    IILD F
Sbjct: 542 YELSHERYVDTLWDIPIIGSTSTERVKNNENL--TQKPEKLLERIIQASSDENSIILDFF 599

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            GSGT+ AVA KL+R +IGIEM + +  +   R+  V
Sbjct: 600 AGSGTTCAVAHKLKRKYIGIEMGEHFDSVILPRLKKV 636


>gi|309806637|ref|ZP_07700633.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
           03V1-b]
 gi|308166942|gb|EFO69125.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
           03V1-b]
          Length = 576

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/280 (22%), Positives = 110/280 (39%), Gaps = 47/280 (16%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       V  I+ DPPYN + +              + +++   +
Sbjct: 189 NLIIKGNNLIALASLLKRYEGKVKCIYIDPPYNTKND--------------SFNYNDSFN 234

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSN 135
              +  F +  L   R++L+ +GT++V    +    +  ++ ++        +IVW    
Sbjct: 235 HSTWLTFMKNRLELARKLLREDGTIFVQCDDNEQAYLKVLMDSIFGRNNFQAEIVWVLEG 294

Query: 136 PMPN-FRGRRFQNAHETLIWASP---SPKAKGYTFNYDALKAANEDVQMRSDWLIPICS- 190
                     +   HE++++ S        K Y    +        +        PI   
Sbjct: 295 ASGYKSLVNNYVRGHESILFYSKSNYFNFNKIYLPYSEKQIKRFSKLDDSGRRYKPITKT 354

Query: 191 ---------------------GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
                                  + + N        TQKPE L+ RI+ + T   D++LD
Sbjct: 355 RRLYLDEAKGVPLTDVWTDIASFQTIVNSPERTGFDTQKPEKLIERIIETLTTTHDLVLD 414

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYI-DIATKRIASV 268
              GSGT+ AVA K+ R +IG+E + DYI DI  +R+  V
Sbjct: 415 FHLGSGTTAAVAHKMGRRYIGVE-QMDYIQDITVERLKKV 453


>gi|78777552|ref|YP_393867.1| site-specific DNA-methyltransferase (adenine-specific)
           [Sulfurimonas denitrificans DSM 1251]
 gi|78498092|gb|ABB44632.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Sulfurimonas denitrificans DSM 1251]
          Length = 378

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/300 (22%), Positives = 119/300 (39%), Gaps = 63/300 (21%)

Query: 18  EWKDKIIKGNSISVLEKLPAK-----------SVDLIFADPPYNLQLNGQLY-------- 58
           EWK+++I G++I V++ L A             +DLI+ DPP++ + + +          
Sbjct: 62  EWKNRLIYGDNILVMQGLLAGDATSGLESMRGKIDLIYIDPPFDSKADYRTKITLPNINL 121

Query: 59  --RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
             +P      A  D+W   +   +Y       L+  R +L   G+++V   +H    +  
Sbjct: 122 SQKPTVIEQFAYADTWKDGTV--SYLKMIYPRLVLMRELLSEKGSIYVHIDWHVGHYVKI 179

Query: 117 MLQNL--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK--------GYTF 166
           +L ++       N+I+W  S         +F   H+ +     S  A          Y+ 
Sbjct: 180 LLDDIFGKGKFRNEIIWHYSTLGRP--KDKFAQKHDQIFVYGKSDDAFFNTEEAKIPYSD 237

Query: 167 NY-----------------------DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
           +Y                         +   +E +     W IP  +   +         
Sbjct: 238 DYIESHFRDIDDNGKKCRKRFDAGKWRIYYPDEGMIPNDVWDIPYENSMSK-----ERVS 292

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           + TQKP AL+ RI+ SST  G +I D F GSGT+  VA++L R +I  ++ +  I +  K
Sbjct: 293 YATQKPVALMERIIKSSTIKGQLIADFFGGSGTTAVVAERLNRQWISSDIGKPSIMVQRK 352


>gi|320199117|gb|EFW73713.1| Adenine-specific methyltransferase [Escherichia coli EC4100B]
          Length = 217

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/245 (24%), Positives = 95/245 (38%), Gaps = 56/245 (22%)

Query: 34  KLPAKSVDL---IFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
           KL  ++V L      DPPY +       R   ++   V D W + +S E Y         
Sbjct: 2   KLKQQTVRLSRRTLTDPPYLVGFRD---RSGRTIAGDVNDDWLQPASNEMY--------- 49

Query: 91  ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNFRGRRFQNAH 149
              RVLK +  +     ++ I R     +   F ++  +V+ KS      +   R + A+
Sbjct: 50  ---RVLKKDALMVSFYGWNRIDRFMAAWKRAEFSVVGHLVFTKSYTSKSAYVAYRHECAY 106

Query: 150 -----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
                   +   P P   G+ +                                 G + H
Sbjct: 107 ILAKGRPALPPKPLPDVLGWKY--------------------------------SGNRHH 134

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ + Y     +R
Sbjct: 135 PTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQR 194

Query: 265 IASVQ 269
           +A+VQ
Sbjct: 195 LATVQ 199


>gi|10954486|ref|NP_039775.1| DNA modification methylase [Methanothermobacter thermautotrophicus]
 gi|266584|sp|P29568|MTHZ_METTF RecName: Full=Modification methylase MthZI; Short=M.MthZI; AltName:
           Full=N-4 cytosine-specific methyltransferase MthZI
 gi|44647|emb|CAA48447.1| ZIM [Methanothermobacter thermautotrophicus]
 gi|44659|emb|CAA47651.1| mthZIM [Methanothermobacter thermautotrophicus]
          Length = 355

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/284 (21%), Positives = 106/284 (37%), Gaps = 27/284 (9%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN-LQLNGQLYRP-DHSLVDAVTDSWDK 74
            +   +I   NS   + +L  KS++L+   PPY  +++  +L+   +  + + + D  D 
Sbjct: 1   MKTTHRIYFKNSAD-MNELKDKSINLVVTSPPYPMVEIWDRLFSELNPKIEETLIDEEDG 59

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGT-LWVIGS-----------YHNIFRIGTMLQNLN 122
             S+               RV  P G  +  IG            Y N  R      +  
Sbjct: 60  LRSYNLMHEELEKVWHEVDRVTAPGGVVIINIGDATRKIGKKFQLYPNHVRTIDFFFDRG 119

Query: 123 FWILNDIVWRKSNPMP-NFRGR-------RFQNAHETLIWASPS-PKAKGYTFNYDALKA 173
           + +L  I+WRK +  P  F G           + HE ++      P+           + 
Sbjct: 120 YQVLPFIIWRKQSNKPTKFMGSGMLPPNAYVTHEHEYILIFRKEGPRQFKTEEERKLRRE 179

Query: 174 ANEDVQMRSDWLIPICS---GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
           +    + R+ W   + +   G  +  N    +      P  L  R++   +  GD +LDP
Sbjct: 180 SAYFWEERNQWFSDVWTDLTGVSQRLNHKNLRKRAAAYPFELAYRLINMYSIMGDWVLDP 239

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
           F G+GT+   A    R+ IG E+  ++ D+   RI     L N 
Sbjct: 240 FLGTGTTMIAAACAGRNSIGYELDHNFKDLIESRINETLKLSNE 283


>gi|309805410|ref|ZP_07699457.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
           09V1-c]
 gi|308165228|gb|EFO67464.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
           09V1-c]
          Length = 576

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 62/280 (22%), Positives = 112/280 (40%), Gaps = 47/280 (16%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       V  I+ DPPYN + +              + +++   +
Sbjct: 189 NLIIKGNNLIALASLLKRYEGKVKCIYIDPPYNTKND--------------SFNYNDSFN 234

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSN 135
              +  F +  L   R++L+ +GT++V    +    +  ++ ++        +IVW    
Sbjct: 235 HSTWLTFMKNRLELARKLLREDGTIFVQCDDNEQAYLKVLMDSIFGRNNFQAEIVWVLEG 294

Query: 136 PMPN-FRGRRFQNAHETLIWASPSPKAK----------------------GYTFNYDALK 172
                     +   HE++++ S S                          G  +      
Sbjct: 295 ASGYKSLVNNYVRGHESILFYSKSNYFNFNKIYLPYSEKQIKRFSKLDDSGRRYKPITKT 354

Query: 173 AANEDVQMRSDWLIPICS---GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
                 + +   L  + +     + + N        TQKPE L+ RI+ + T   D++LD
Sbjct: 355 RRLYLDEAKGVPLTDVWTDIASFQTIVNSPERTGFDTQKPEKLIERIIETLTTTHDLVLD 414

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYI-DIATKRIASV 268
              GSGT+ AVA K+ R +IG+E + DYI DI  +R+  V
Sbjct: 415 FHLGSGTTAAVAHKMGRRYIGVE-QMDYIQDITVERLKKV 453


>gi|260170368|ref|ZP_05756780.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides sp.
           D2]
 gi|315918727|ref|ZP_07914967.1| DNA methylase [Bacteroides sp. D2]
 gi|313692602|gb|EFS29437.1| DNA methylase [Bacteroides sp. D2]
          Length = 326

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 79/306 (25%), Positives = 113/306 (36%), Gaps = 71/306 (23%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           I  + +K+I+G+ +++L  +P KS+D+I  D PY    N                 WD  
Sbjct: 30  IKPFVNKVIQGDCLNILPSIPDKSIDMILCDLPYGTTQN----------------KWDSV 73

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
              +A  A          R++K NG + +  +   IF    +L          I W KS 
Sbjct: 74  IDLQALWA-------EYERIIKDNGAIVL--TAQGIFTAKLILSKEKL-FKYKITWIKSK 123

Query: 136 PMPNFRGRRFQ-NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI-------- 186
           P      ++     HE +         K   +N    K    D  +R D           
Sbjct: 124 PTNFLNAKKQPLRKHEDVCVFYK----KQSVYNPQMTKGEAYDKGVRKDQYTGSYGEFKP 179

Query: 187 -PICSGSERLRN-------------------KDGEKLHPTQKPEALLSRILVSSTKPGDI 226
             + S  ER  N                    +GE  HPTQKP  L   ++ + + PGDI
Sbjct: 180 QHVKSDGERYPNDVVFFEEDHDDFVYVKTAESEGEVYHPTQKPVELGRYLIRTFSNPGDI 239

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQ----------DYIDIATKRIASVQPLGNIEL 276
           ILD   GSG+    A    R FIGIE  +          DYI I   RI+  + L   E+
Sbjct: 240 ILDNACGSGSFLLSAILENRRFIGIEKNEDVLLHRIQPTDYIKICMDRIS--ETLKREEV 297

Query: 277 TVLTGK 282
           T  T K
Sbjct: 298 TPSTRK 303


>gi|160935258|ref|ZP_02082641.1| hypothetical protein CLOBOL_00154 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441989|gb|EDP19686.1| hypothetical protein CLOBOL_00154 [Clostridium bolteae ATCC
           BAA-613]
          Length = 236

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/259 (20%), Positives = 89/259 (34%), Gaps = 40/259 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++  G+ + +L  +  KS+D+IF D PY    NG                WD        
Sbjct: 2   ELFLGDCLDILPGIQDKSIDMIFTDLPYGTTRNG----------------WDCVID---- 41

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
               +       R++K NG + +     + F       NL  +    I+ +         
Sbjct: 42  ---LKRLWEHYSRIIKNNGCIALWA--QSPFDKVLACSNLKMYRYEWIIEKTKGTGHLNA 96

Query: 142 GRRFQNAHETLIWASPSPKAKGYTF-------NYDALKAANEDVQMRSDWLIPICSGSER 194
            +     HE ++                    +      ++     ++   I     +ER
Sbjct: 97  AKMPMKCHENVLIFYKHLPTYNPQITTGHSPVHSYTKHVSDGSNYGKTRTGISGGGSTER 156

Query: 195 L--------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                     +   E+LHPTQKP       + + T  GD +LD   GS T+G   ++L R
Sbjct: 157 YPRDVLRFKWDTQRERLHPTQKPLEACKYFIRTYTNSGDTVLDSCMGSNTTGVACQELGR 216

Query: 247 SFIGIEMKQDYIDIATKRI 265
            +IGIE       IA  R+
Sbjct: 217 KYIGIEKDTVNYRIALDRV 235


>gi|150009567|ref|YP_001304310.1| adenine-specific DNA methylase [Parabacteroides distasonis ATCC
           8503]
 gi|149937991|gb|ABR44688.1| adenine-specific DNA methylase [Parabacteroides distasonis ATCC
           8503]
          Length = 654

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 68/350 (19%), Positives = 129/350 (36%), Gaps = 86/350 (24%)

Query: 18  EWKDKIIKGNSISVLEKL---------PA--KSVDLIFADPPYNLQLNGQLY-------- 58
           EW ++++ G+++  ++ L         P+    VDLI+ DPP++ + + +          
Sbjct: 63  EWMNRLVYGDNLLAMQALLAGDEATGLPSLRGKVDLIYIDPPFDSKADYRTKINLPGMDI 122

Query: 59  --RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
             +P      A +D+W   +   +Y       L+  R +L   G+++V   +H    +  
Sbjct: 123 EQKPTVIEQFAYSDTWQDGTV--SYLKMLYPRLVLMRELLSDKGSIYVHIDWHVGAYVKV 180

Query: 117 MLQNLNFW--ILNDIVWRKSNPMPNFRG-------------------------------R 143
           ++ ++      +N+I+W    P P                                    
Sbjct: 181 LMDDVFGKDNFVNNIIWHYGGPSPIKTAFARKYDIIYLYGKTLKRIFNPQYGNIPISVLN 240

Query: 144 RFQNAHETLIWAS------------------PSPKAKGYTFNYDALKAANEDVQMRSDWL 185
           R +      +W                       + K             E  Q  + W 
Sbjct: 241 RAKKDENGRLWLDQNLGKLKEDTIAKMESEGRLYRTKTGGLRRKQYLDEMEGAQFDNVWD 300

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           IPI +   +      +  + TQKPEALL RI+ +S+  GD++ D F GSGT+ AVA++L 
Sbjct: 301 IPIINSQAK-----EDVGYITQKPEALLERIIKASSNEGDLVCDFFGGSGTTAAVAERLG 355

Query: 246 RSFIGIEMKQDYIDIATKRI--ASVQPL-----GNIELTVLTGKRTEPRV 288
           R +I  ++ +    +  KR     V+P      G+ +       +   R+
Sbjct: 356 RRWITTDIGKPATLVMRKRFIDQEVKPFLYQAIGDYQKEAFQNNKQYKRI 405


>gi|317179829|dbj|BAJ57615.1| Type IIS restriction enzyme M2 protein [Helicobacter pylori F32]
          Length = 287

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 117/289 (40%), Gaps = 44/289 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +K+   +S + + ++P  SVDLI   PPY N++   +    D        +       +E
Sbjct: 4   NKVFYHSSTN-MNEVPDNSVDLIITSPPYFNIKDYAKNGTQDLQHSAQHVEDLGALEKYE 62

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVI-----------GSYHNIFRIGT-------MLQNL 121
            Y        L C R LKPNG L +             +++N             +L +L
Sbjct: 63  DYLLGLLKVWLECYRALKPNGKLCINVPLMPMLKKVLNTHYNRHIFDLHADIQHSILHDL 122

Query: 122 N--------FWILNDIVWRKSNP--------MPNFRGRRFQNAHETLIWASPSPKAKGYT 165
           N         ++L+  +W+++NP         P  R    QN  E +       K K  T
Sbjct: 123 NNTLENKPKMFLLDVYIWKRANPTKRLMFGSYPYPRNFYAQNTIEFIGVFVKDGKPKQPT 182

Query: 166 FNYDALKAANEDVQ---MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK 222
                     ++      +  W IPI + ++    K     H    P  L  R++   + 
Sbjct: 183 EEQKEQSQLTQEEWVEFTKQIWEIPIPNKNDIAFGK-----HAALMPAELARRLIRLYSC 237

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
            GD++LDPF GSGT+   AK L+R+FIG E+ ++Y  +  +++ ++   
Sbjct: 238 VGDVVLDPFSGSGTTLREAKLLKRNFIGYELYENYKPLIEQKLGNLFDF 286


>gi|332346700|gb|AEE60031.1| putative DNA methylase protein [Escherichia coli UMNK88]
          Length = 217

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 94/245 (38%), Gaps = 56/245 (22%)

Query: 34  KLPAKSVDL---IFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
           KL  ++V L      DPPY +       R   ++    TD W + +S E Y         
Sbjct: 2   KLKQQTVRLSRRTLTDPPYLVGFRD---RQGRTITGDKTDEWLQPASNEMY--------- 49

Query: 91  ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNFRGRRFQNAH 149
              RVLK +  +     ++ I R     +   F ++  +V+ K+      +   R + A+
Sbjct: 50  ---RVLKKDALMVSFYGWNRIDRFMAAWKRAGFSVVGHLVFTKNYTSKSAYVAYRHECAY 106

Query: 150 -----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
                   +   P P   G+ +                                 G + H
Sbjct: 107 ILAKGRPALPQKPLPDVLGWKY--------------------------------SGNRHH 134

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PT+KP   L  ++ +   P  I+LDPF GSG++   A +  R +IGIE+ + Y     +R
Sbjct: 135 PTEKPVTSLQPLIETFIHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQR 194

Query: 265 IASVQ 269
           +A+VQ
Sbjct: 195 LAAVQ 199


>gi|163855603|ref|YP_001629901.1| adenine DNA methyltransferase protein [Bordetella petrii DSM 12804]
 gi|163259331|emb|CAP41631.1| adenine DNA methyltransferase protein [Bordetella petrii]
          Length = 319

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/329 (20%), Positives = 117/329 (35%), Gaps = 83/329 (25%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKL-PAK-SVDLIFADPPYNLQLNG-QLYRPDHSLV 65
           ++   N    W D+   G+   +L+++      V +    PPY    +      PD  L 
Sbjct: 1   MSRPVNDAGRWLDRTHAGDCRQLLKRMYQDGVRVQMCVTSPPYFGLRSYLPAGHPDKRL- 59

Query: 66  DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN--------------- 110
                   +  +   Y         A R+VL  +GTLWV+                    
Sbjct: 60  -----EIGRQITVRKYIRDLVDVFRAVRQVLADDGTLWVVIGDTYAATRTWQAPSTRGGP 114

Query: 111 --------------------------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
                                      + +   L+   +++  DIVW K NPMP     R
Sbjct: 115 KHAAAQQAAGGMRTGDGLKPKDMMGIPWALAFALRRDGWYLRQDIVWAKPNPMPESVADR 174

Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER---------- 194
              +HE L   + +   + Y F+ DA++  + D +   +         ER          
Sbjct: 175 CTRSHEYLFLLAKN---RHYYFDQDAIREPSTDPRGPGNIRPVSAPPGERASSGNANLRG 231

Query: 195 ------------------LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
                             + +K     H    P+ L++  +++ ++ GD +LDPF GSGT
Sbjct: 232 SLHKIGARSTRNRRDVWTIASKPFRGGHFAVFPDTLVTPCILAGSRAGDTVLDPFMGSGT 291

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           +   A +L+R FIG E+ + +ID   +R+
Sbjct: 292 TAVAALRLQRHFIGCELNRSFID--QQRL 318


>gi|85714766|ref|ZP_01045753.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
           Nb-311A]
 gi|85698651|gb|EAQ36521.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
           Nb-311A]
          Length = 451

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 61/248 (24%), Positives = 108/248 (43%), Gaps = 16/248 (6%)

Query: 21  DKIIKGNSI--SVLEK-LPA-KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            ++  G+S     L++ +   K VD  F DPPYN+++ G           A+       +
Sbjct: 200 HRVGCGDSRDAEFLQRVIGDRKRVDAAFLDPPYNVRIGGHAVSAGSHREFAMASGEMNEA 259

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            F ++ A T   L A   V +     +V   + ++  +  +   +    LN  VW KSN 
Sbjct: 260 EFRSFLADT---LGAAASVSRDGAVHFVCMDWRHMDSVSAVGATVYGACLNLCVWNKSNA 316

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
                G  +++ HE +          G   + + ++         + W     + S R  
Sbjct: 317 G---MGSLYRSKHELVFVYRV-----GMAPHLNMVELGKYGRNRTNVWDYASVN-SMRGS 367

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
            ++   LHPT KP  L++  L   T+ GD++LD F GSGT+   A++  R F G+++   
Sbjct: 368 RREDLTLHPTVKPTGLVADALKDVTRHGDLVLDLFLGSGTTLIAAERTGRCFRGLDIDPA 427

Query: 257 YIDIATKR 264
           Y+D+A +R
Sbjct: 428 YVDVAIER 435


>gi|297526129|ref|YP_003668153.1| DNA methylase N-4/N-6 domain protein [Staphylothermus hellenicus
           DSM 12710]
 gi|297255045|gb|ADI31254.1| DNA methylase N-4/N-6 domain protein [Staphylothermus hellenicus
           DSM 12710]
          Length = 339

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 102/275 (37%), Gaps = 46/275 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +  I  G+S + L  +P++SV L+   PPY +    + Y+P    +  + D       + 
Sbjct: 58  RHIIYHGDSRN-LSFIPSESVHLVVNSPPYWIV---KKYKPIPGQLGVIKD-------YN 106

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVI-----------GSYHNIFRIGTMLQN---LNFWI 125
            +            RVL P G L ++           G +  I     +++    + F  
Sbjct: 107 KFLEELGKVWREVYRVLVPGGRLIIVVGDVLLPRRKYGRHRVIPLHSDIIKQCTSIGFEY 166

Query: 126 LNDIVW-------RKSNPMPNFRGRRF------QNAHETLIWASPSPKAKGYTFNYDALK 172
           L  I+W       R+      F G+ +      +N  E ++              Y ++ 
Sbjct: 167 LAPIIWFKIGNVSREVPGRSGFLGKPYMPNAVIKNDIEYILMFRKPG--------YRSVS 218

Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
                + +  + L             +  K HP   P  L  R++   +   D +LDPF 
Sbjct: 219 RVRMKLSVIPEKLFKEWFTQIWRLLGESTKHHPAPFPLELAERLIRMYSYVYDTVLDPFM 278

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           G+GT+   A +  R+ IG+E+  +Y+  A  R+  
Sbjct: 279 GTGTTLLAAARTGRNSIGVEIDPEYVKYAYNRLRK 313


>gi|189461068|ref|ZP_03009853.1| hypothetical protein BACCOP_01715 [Bacteroides coprocola DSM 17136]
 gi|189432158|gb|EDV01143.1| hypothetical protein BACCOP_01715 [Bacteroides coprocola DSM 17136]
          Length = 252

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/265 (21%), Positives = 88/265 (33%), Gaps = 47/265 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + K + + V+  LP  S+DL+  DPP+ +                    WDK   F   
Sbjct: 11  TLYKADCLEVMPFLPESSIDLVLCDPPFGI----------------TASQWDKIIPFPEM 54

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGS--YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                      RRV K N    + GS  + +  R G +          D VW KS     
Sbjct: 55  -------WKEIRRVRKENAPTVLFGSEPFSSFLRCGNL-----DEFKYDWVWEKSKASNF 102

Query: 140 FRGRRFQ-NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
              ++    AHE +                                +  + + + R  NK
Sbjct: 103 LLAKKQPLKAHELISVFGKGRTPYYPIMEEGEPYGNRTKRGSNWTGINNVPNPTFRHENK 162

Query: 199 ----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
                           +G+ +H  QKP ALL  ++ + TK GD +LD   GS ++     
Sbjct: 163 GTRYPRSVIYFKTAESEGKTIHVNQKPIALLEYLIKTYTKEGDTVLDFASGSMSTAIACI 222

Query: 243 KLRRSFIGIEMKQDYIDIATKRIAS 267
              R  I IE  + Y     KR+ +
Sbjct: 223 YTNRKCICIEKDETYFSQGEKRVRN 247


>gi|251795626|ref|YP_003010357.1| DNA methylase N-4/N-6 domain protein [Paenibacillus sp. JDR-2]
 gi|247543252|gb|ACT00271.1| DNA methylase N-4/N-6 domain protein [Paenibacillus sp. JDR-2]
          Length = 358

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/356 (18%), Positives = 113/356 (31%), Gaps = 111/356 (31%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQL---------YRPDHSLVDAVTDSWD 73
           I+ G+  +V+  +  +        PPY    +  +         Y P   L      +W+
Sbjct: 2   ILHGDCRTVMASMEPEQFHTCVTSPPYWGLRDYGIPGSDWPEVTYTPMAGLPQVTVPAWN 61

Query: 74  K----FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN------------------- 110
                  + E + A +        R+L+P GTLW+                         
Sbjct: 62  GCLGLEPTPEMFVAHSVLVFREVWRLLRPEGTLWMNYGDSYAKSGLSGMGDPTIGERNLG 121

Query: 111 ---------------------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAH 149
                                 +R+   LQ   +++  D +W K N MP     R   AH
Sbjct: 122 GMKAIAKSIPIGLKPKDLIGIPWRVAFALQADGWYLRMDNIWNKPNCMPESVKDRPTKAH 181

Query: 150 ETLIWASPSPKAKGYTFNYDALKAANEDV------------------------------- 178
           E +   S    +  Y ++ +A+K    D                                
Sbjct: 182 EYMFLLSK---SDRYYYDAEAIKEQMNDSSIARLSQDVENQQGSDRANGGSKKGMKAVGK 238

Query: 179 -----QMRSDWLIPICSGSERLRNKDGE-------------------KLHPTQKPEALLS 214
                +  ++  +P      R   +D E                   + H    PE L+ 
Sbjct: 239 AYSFARNVNEGKVPGQVKQHRTDREDVEYYGTRNKRSVWTVATAQFTEAHFATFPEKLIE 298

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
             +++       +LDPF GSGT+  VA +  R    IE+ + Y++IA +R A++QP
Sbjct: 299 PCILAGAPVDGKVLDPFGGSGTTLKVALENNRECTIIELGEQYVEIAERRTATLQP 354


>gi|116486907|emb|CAH64840.1| DNA methylase [Wolbachia endosymbiont of Drosophila simulans]
          Length = 401

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 92/248 (37%), Gaps = 39/248 (15%)

Query: 21  DKIIKGNSISVLEKLP----AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            +I  G+S SV+E        K  D+   DPPYN+  +      D  +++          
Sbjct: 163 HRIYCGDS-SVVESFKAVLGDKMADITICDPPYNVDYSN---SQDKKILNDNQG------ 212

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E Y+ F            K  G +++  S      +    +         I+W K++ 
Sbjct: 213 --EKYELFLYDICTHILAYTK--GAIYICISSSEFSTLQKAFEEAGGKWSTFIIWAKNHF 268

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
                    Q  +E +++   S   + +                   W     +      
Sbjct: 269 TLGRSDY--QRQYEAMLYGWKSGNKREWH----------GGRNQSDLWFYDKPT------ 310

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                 LHPT KP  L+ + +V+S++PGD +LDPF GSG++    ++  R    IE+   
Sbjct: 311 ---HNTLHPTMKPVELMEKAIVNSSRPGDTVLDPFSGSGSTLIACERTGRICRTIELDSK 367

Query: 257 YIDIATKR 264
           ++D+  KR
Sbjct: 368 FVDVTIKR 375


>gi|255103003|ref|ZP_05331980.1| DNA methylase N-4/N-6 domain-containing protein [Clostridium
           difficile QCD-63q42]
 gi|255519121|ref|ZP_05386797.1| DNA methylase N-4/N-6 domain-containing protein [Clostridium
           difficile QCD-97b34]
 gi|255652294|ref|ZP_05399196.1| DNA methylase N-4/N-6 domain-containing protein [Clostridium
           difficile QCD-37x79]
          Length = 256

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/274 (19%), Positives = 96/274 (35%), Gaps = 39/274 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+  GN + +++ +  KS+DLI  D PY                      WD    F   
Sbjct: 8   KLYNGNCLEIMDLIEDKSIDLILCDLPYGT----------------TNCKWDTIIPF--- 48

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
               ++      R++K  G + +  +    F    +  N+  +  +    +  +    F 
Sbjct: 49  ----KSIWNQYNRIIKDGGAIVLFSA--QPFTTSLINSNIKNYKYSWYWIKNKSTGFAFS 102

Query: 142 GRRFQNAHETL-IWASPSPKAKGYTFNY------DALKAANEDVQMRS-------DWLIP 187
             +     E + ++   +P                  K  N+D   R             
Sbjct: 103 KYQPLRKVEDINVFYKKAPLYNPQNLEKLDKPITCKKKNKNKDGIYRHHTLSKEYVQEYT 162

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
               +    NK+   +HPTQKP  LL  ++ + T   +++LD  FGSG+ G     + R 
Sbjct: 163 NYPNNTLYFNKETNCIHPTQKPVDLLEYLIKTYTNENELVLDNCFGSGSVGIACANINRK 222

Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
           F+GIE+  DY      RI        I+  ++  
Sbjct: 223 FVGIELDSDYFLQGKNRIERAYRNNAIDKNIVKS 256


>gi|304439723|ref|ZP_07399622.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371798|gb|EFM25405.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 383

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 101/270 (37%), Gaps = 17/270 (6%)

Query: 20  KDKIIKGNSISVLEKLPAKS--VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           K+ ++  +    +  L      VDLI+ DPP+N      +   D        D ++    
Sbjct: 41  KNLVVLADGFETINFLKENKILVDLIYIDPPFNTGKTFGI-EIDAGDEKIYKDCYEDNLD 99

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            + +  +    L   + +LK  G++++   Y     +  ++  +            S   
Sbjct: 100 KDEFLLWMYEILTRLKNLLKETGSIFLHVDYRTSSELKLIMDKVFGDSNFVNEIIWSYKS 159

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYT-------------FNYDALKAANED-VQMRSD 183
                + F   H+ +++ S   + K +              +N+  +K   +        
Sbjct: 160 GGAGKKSFSKKHDNILFYSKDYRQKIFKPLKEKSYNRDFKPYNFKGVKEYKDHLGYYTMV 219

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
            +  + +     R       +P+QKP  LL RI+ S+T+ G  +LD F GSG++   A  
Sbjct: 220 NMKDVWNIDMVGRTSSERVKYPSQKPFELLRRIIESTTEEGMTVLDIFGGSGSTAKAASI 279

Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           L+R +I  ++ +    +A + +       N
Sbjct: 280 LKRHYIHGDISEYSCSVAREYLEDATYFSN 309


>gi|82703297|ref|YP_412863.1| site-specific DNA-methyltransferase (adenine-specific)
           [Nitrosospira multiformis ATCC 25196]
 gi|82411362|gb|ABB75471.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nitrosospira multiformis ATCC 25196]
          Length = 673

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 62/328 (18%), Positives = 119/328 (36%), Gaps = 74/328 (22%)

Query: 12  NQNSIFEWKDKIIKGNSISVLEKL-----------PAKS--VDLIFADPPYNLQLNGQLY 58
           N+N +  W +K+I G+++  ++ L              +  + L++ DPP+  +   Q  
Sbjct: 64  NKNGVT-WHNKLIFGDNLQAMKTLLEMKRRGELCNADGTSGIRLVYIDPPFATRQEFQGA 122

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
           +   +  D +  +         +  F R  L+  R +L  NG L+V   Y     I  +L
Sbjct: 123 QDQKAYQDKIYGA--------TFIEFLRKRLILIRDLLSDNGLLYVHLDYRKSHYIKVIL 174

Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD--------- 169
             +                     R +   H+ ++  + + K+  + FN+          
Sbjct: 175 DEIFGEQNFMNEVAWCYGERELATRHWNRKHDNILVYAKNFKSDQHVFNWKEAAGQYSQG 234

Query: 170 ------------------------ALKAANEDVQMRSDWLIPICSGSERLRNKDGEK--- 202
                                   +       + +  +   P     +    K+G +   
Sbjct: 235 TLAKYEHIDEDGRKFQLRGRNVKGSPWRGKHGIPLDVEAANPEWVYRDYFDTKEGIRPRD 294

Query: 203 ----------------LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                            +P+ K  ALL+RI+  S+  GD+++D F GSGT+ AVA+KL R
Sbjct: 295 WWSDIPFLNRASSDRYDYPSAKNPALLNRIIKVSSNIGDLVMDAFAGSGTTCAVAEKLNR 354

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNI 274
            +IGI+  +  I    KR+ ++   G  
Sbjct: 355 RWIGIDCGKLAIYTIQKRMLNLSEKGKA 382


>gi|261837490|gb|ACX97256.1| type III restriction enzyme M protein [Helicobacter pylori 51]
          Length = 619

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 69/284 (24%), Positives = 114/284 (40%), Gaps = 47/284 (16%)

Query: 15  SIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
           S  E    +IK  +   L  L     +++D I+ DPP+N          D + +D   DS
Sbjct: 239 SEDEINGTLIKSENYQALNSLKNRYKETIDCIYIDPPFNTG-------SDFAYIDKFQDS 291

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--ILNDI 129
                    + +     L      L   G+ ++    +  +    +L ++       N+I
Sbjct: 292 --------TWLSLMHNRLELAYDFLSSQGSFYLHLDNNANYLGRMLLNDIFGKENFRNEI 343

Query: 130 VWRKSNPMPNFRGRRFQN---------AHETLIWASPSP----------------KAKGY 164
           +W  SN M N      +N         + + + +    P                  +  
Sbjct: 344 IWYYSNKMANSGNSFAKNTETILNYSKSEKYIFYRQKEPRSEPVLLSKREGRDGKNMRAR 403

Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
             N   +   + +  + + W IPI   +   R K+ E L  TQKPE LL RI+ +S+   
Sbjct: 404 DENGKVIYELSHERYVDTLWDIPIIGSTSTERVKNNENL--TQKPEKLLKRIIQASSDEN 461

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            I+LD F GSGT+ AVA KL+R +IGIEM + +  +   R+  V
Sbjct: 462 SIVLDFFAGSGTTCAVAHKLKRKYIGIEMGEHFERVILPRLKKV 505


>gi|15645980|ref|NP_208160.1| type IIS restriction enzyme M2 protein (mod) [Helicobacter pylori
           26695]
 gi|2314539|gb|AAD08412.1| type IIS restriction enzyme M2 protein (mod) [Helicobacter pylori
           26695]
          Length = 287

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 117/289 (40%), Gaps = 44/289 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +K+   +S + + ++P  SVDLI   PPY N++   +    D        +       +E
Sbjct: 4   NKVFYHSSTN-MNEVPDNSVDLIITSPPYFNIKDYAKNGTQDLQHSAQHVEDLGALEKYE 62

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVI-----------GSYHNIFRIGT-------MLQNL 121
            Y        L C R LKPNG L +             +++N             +L +L
Sbjct: 63  DYLLGLLKVWLECYRALKPNGKLCINVPLMPMLKKVLNTHYNRHIFDLHADIQHSILHDL 122

Query: 122 N--------FWILNDIVWRKSNP--------MPNFRGRRFQNAHETLIWASPSPKAKGYT 165
           N         ++L+  +W+++NP         P  R    QN  E +       K K  T
Sbjct: 123 NNMLKNKPKMFLLDVYIWKRANPTKRLMFGSYPYPRNFYAQNTIEFIGVFVKDGKPKQPT 182

Query: 166 FNYDALKAANEDVQ---MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK 222
                     ++      +  W IPI + ++    K     H    P  L  R++   + 
Sbjct: 183 EEQKEQSQLTQEEWVEFTKQIWEIPIPNKNDIAFGK-----HAALMPAELARRLIRLYSC 237

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
            GD++LDPF GSGT+   AK L+R+FIG E+ ++Y  +  +++ ++   
Sbjct: 238 VGDVVLDPFSGSGTTLREAKLLKRNFIGYELYENYKPLIEQKLGNLFDF 286


>gi|325996644|gb|ADZ52049.1| type IIS restriction enzyme M2 protein [Helicobacter pylori 2018]
 gi|325998233|gb|ADZ50441.1| type IIS restriction enzyme M2 protein [Helicobacter pylori 2017]
          Length = 287

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 116/289 (40%), Gaps = 44/289 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +K+   +S + + ++P  SVDLI   PPY N++   +    D        +       +E
Sbjct: 4   NKVFYHSSTN-MNEVPDNSVDLIITSPPYFNIKDYAKNGTQDLQHSAQHVEDLGALEKYE 62

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVI-----------GSYHNIFRIGT-------MLQNL 121
            Y        L C R LKPNG L +             +++N             +L +L
Sbjct: 63  DYLLGLLKVWLECYRALKPNGKLCINAPLMPMLKKVLNTHYNRHIFDLHADIQHSILHDL 122

Query: 122 N--------FWILNDIVWRKSNP--------MPNFRGRRFQNAHETLIWASPSPKAKGYT 165
           N         ++L+  +W++ NP         P  R    QN  E +       K K  T
Sbjct: 123 NNILENKPKMFLLDVYIWKRVNPTKRLMFGSYPYPRNFYAQNTIEFIGVFVKDGKPKQPT 182

Query: 166 FNYDALKAANEDVQ---MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK 222
                     ++      +  W IPI + ++    K     H    P  L  R++   + 
Sbjct: 183 EEQKEQSQLTQEEWVEFTKQIWEIPIPNKNDIAFGK-----HAALMPAELARRLIRLYSC 237

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
            GD++LDPF GSGT+   AK L+R+FIG E+ ++Y  +  +++ ++   
Sbjct: 238 VGDVVLDPFSGSGTTLREAKLLKRNFIGYELYENYKPLIEQKLGNLFDF 286


>gi|208434731|ref|YP_002266397.1| DNA methylase [Helicobacter pylori G27]
 gi|208432660|gb|ACI27531.1| DNA methylase [Helicobacter pylori G27]
          Length = 272

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 62/285 (21%), Positives = 113/285 (39%), Gaps = 52/285 (18%)

Query: 13  QNSIFEWKDKIIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
           + +I    +     N ++ ++ KL  +S+D+I   PPY                      
Sbjct: 6   KPNIQSLLNNFYVDNCVNFMQHKLQNESIDMILTSPPY---------------------- 43

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGS-------YHNIFRIGTMLQNLNF 123
            D   +++ Y            RV+K  G + W++G            FR     Q + F
Sbjct: 44  -DNLRNYQGYTFAFENIANEIFRVIKRGGVVVWIVGDKIKNGNKSLTSFRQALYFQQIGF 102

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP------SPKAKGYTFNYDALKAANED 177
            + + +++ K N  P  R   + NA+E +   S       +P  +    N   +   N+ 
Sbjct: 103 NMHDVMIYAKKNT-PFMRSNAYTNAYEYMFVLSKGKPKTFNPLKEPTARNGMEMLVTNKG 161

Query: 178 VQMRSDWLI----------PICSGSERLRNKDGEKL---HPTQKPEALLSRILVSSTKPG 224
              +++ ++           I   +  L     +K+   HP   PE L    ++S +   
Sbjct: 162 ADAKNNKILKELKKEKTKNNIWHYAVGLGGSTNDKIAFNHPAIFPEQLALDHILSWSNER 221

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           DI+ DP  GSGT+  +A    R+FIG+++ ++YI IA KR+   Q
Sbjct: 222 DIVFDPMCGSGTTCKMAFLHNRNFIGVDISKEYIQIAQKRLQQYQ 266


>gi|308062652|gb|ADO04540.1| type IIS restriction enzyme M2 protein (mod) [Helicobacter pylori
           Cuz20]
          Length = 287

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 117/289 (40%), Gaps = 44/289 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +K+   +S + + ++P  SVDLI   PPY N++   +    D        +       +E
Sbjct: 4   NKVFYHSSTN-MNEVPDNSVDLIITSPPYFNIKDYTKNGTQDLQHSTQHVEDLGALEKYE 62

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVI-----------GSYHNIFRIGT-------MLQNL 121
            Y        L C R LKPNG L +             +++N             +L +L
Sbjct: 63  DYLLGLLKVWLECYRALKPNGKLCINVPLMPMLKKVLNTHYNRHIFDLHADIQHSILHDL 122

Query: 122 N--------FWILNDIVWRKSNP--------MPNFRGRRFQNAHETLIWASPSPKAKGYT 165
           N         ++L+  +W+++NP         P  R    QN  E +       K K  T
Sbjct: 123 NNTLENKPKMFLLDVYIWKRANPTKRLMFGSYPYPRNFYAQNTIEFIGVFVKDGKPKQPT 182

Query: 166 FNYDALKAANEDVQ---MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK 222
                     ++      +  W IPI + ++    K     H    P  L  R++   + 
Sbjct: 183 EEQKEQSQLTQEEWVEFTKQIWEIPIPNKNDIAFGK-----HAALMPAELARRLIRLYSC 237

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
            GD++LDPF GSGT+   AK L+R+FIG E+ ++Y  +  +++ ++   
Sbjct: 238 VGDVVLDPFSGSGTTLREAKLLKRNFIGYELYENYKPLIEQKLGNLFDF 286


>gi|317014761|gb|ADU82197.1| type IIS restriction enzyme M2 protein (mod) [Helicobacter pylori
           Gambia94/24]
          Length = 287

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 66/278 (23%), Positives = 110/278 (39%), Gaps = 43/278 (15%)

Query: 32  LEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
           + ++P  SVDLI   PPY N++   +    D        +       +E Y        L
Sbjct: 14  MNEVPDNSVDLIITSPPYFNIKDYAKNGTQDLQHSAQHVEDLGALEKYEDYLLGLLKVWL 73

Query: 91  ACRRVLKPNGTLWVI-----------GSYHNIFRIGT-------MLQNLN--------FW 124
            C R LKPNG L +             +++N             +L +LN         +
Sbjct: 74  ECYRALKPNGKLCINVPLMPMLKKVLNTHYNRHIFDLHADIQHSILHDLNNTLENKPKMF 133

Query: 125 ILNDIVWRKSNP--------MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
           +L+  +W++ NP         P  R    QN  E +       K K  T          +
Sbjct: 134 LLDVYIWKRVNPTKRLMFGSYPYPRNFYAQNTIEFIGVFVKDGKPKQPTEEQKEQSQLTQ 193

Query: 177 DVQ---MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
           +      +  W IPI + ++    K     H    P  L  R++   +  GD++LDPF G
Sbjct: 194 EEWVEFTKQIWEIPIPNKNDIAFGK-----HAALMPAELARRLIRLYSCVGDVVLDPFSG 248

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           SGT+   AK L+R+FIG E+ ++Y  +  +++ ++   
Sbjct: 249 SGTTLREAKLLKRNFIGYELYENYKPLIEQKLGNLFDF 286


>gi|283852819|ref|ZP_06370082.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio sp. FW1012B]
 gi|283571811|gb|EFC19808.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio sp. FW1012B]
          Length = 320

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 55/282 (19%), Positives = 105/282 (37%), Gaps = 56/282 (19%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           + G+++ +L +LPA+SVDL F  PPY          PD                   Y  
Sbjct: 43  VHGDALELLPRLPARSVDLFFMSPPYADARAYSRIHPDR------------------YVE 84

Query: 84  FTRAWLLACRRVLKPNGTLWVIG-------------SYHNIFRIGTMLQNLNFWILNDIV 130
           +   +  A     K +G++ +                +  ++ +   LQ++ +  L   +
Sbjct: 85  WFLPFARAMLDAAKDSGSMILNIKNRVANRGALKGQRHPYVYALVLALQHMGWRWLETYI 144

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAK--------GYTFNYDALKAANEDVQMRS 182
           W K N +P   G R +++ E +   +   +           Y  +   +     D   R 
Sbjct: 145 WAKPNAVPGRFGPRTKDSFEYVYHFAKGVRPHFDLDAVRVPYKADPAEIARRKRDTLGRR 204

Query: 183 DWLIPI-----------------CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
           + +                         +  N+     H    PE L    +  ++  G 
Sbjct: 205 NTMAGFGRDRTKTYLLGGADPGNVVSVPQTYNQHRGVAHTAAMPEGLAEFFIRVASPAGG 264

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           +++DPF GSGT+  VA++L R   G E+ ++Y+  A +R+A+
Sbjct: 265 VVIDPFAGSGTTVVVARRLGRLAGGFELHEEYVAEAKRRLAA 306


>gi|70607700|ref|YP_256570.1| modification methylase [Sulfolobus acidocaldarius DSM 639]
 gi|68568348|gb|AAY81277.1| modification methylase [Sulfolobus acidocaldarius DSM 639]
          Length = 286

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 66/301 (21%), Positives = 114/301 (37%), Gaps = 46/301 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+I G+S + + ++  KS+ L+   PPY                +A  D  D F S+E Y
Sbjct: 3   KVIFGDSRN-MSEVEDKSIGLVLTSPPY---------------YNAPFDFPDLFPSYEEY 46

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGS--------YHNIFRIGTMLQNLNFWILNDIVWRK 133
               R       RVL        + S        Y  +  +  ++ +L F     I+W+K
Sbjct: 47  LNLLRDVGKELYRVLDDGRVAVFVTSDVRIEGVLYPIVADLIRIMTDLGFKYQERIIWKK 106

Query: 134 SNPM-------------PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
                            P        N +E ++        K +T N       + +   
Sbjct: 107 PEGYIRISRRSGVLIQHPYPLYYYPDNVYEDIVVFKKPG--KFHTTN-QEKSKIDVNKFQ 163

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           +  W + +   +  L N    K      PE L +RI+   +  GD +LDPF G+GT+  V
Sbjct: 164 KEKWYLNVWEITNVLPNNKYSK-FTAPFPEELANRIVTLYSYVGDTVLDPFAGTGTTLYV 222

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK-----RTEPRVAFNLLVE 295
           A+ L R+ +G E+  +  ++  +R+       N E+  +        RT+ R   N  +E
Sbjct: 223 ARILSRNAVGYEIDLELKEVIRERVGHPTLFDNHEVVFVERSDAKRLRTKLREKINEKLE 282

Query: 296 R 296
           +
Sbjct: 283 K 283


>gi|118576608|ref|YP_876351.1| DNA modification methylase [Cenarchaeum symbiosum A]
 gi|118195129|gb|ABK78047.1| DNA modification methylase [Cenarchaeum symbiosum A]
          Length = 359

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 99/252 (39%), Gaps = 28/252 (11%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW----DKF 75
           K ++   +S+    KL   SVDL+  DPPY +       R     V      +     +F
Sbjct: 126 KHRMSCADSMVECAKLKDNSVDLLLTDPPYGISSPYATERQIPRRVRKNGGDFIMPKGEF 185

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
             ++ +D+   AW       +K  G   +  ++  I     +L    F  +N +VW K+N
Sbjct: 186 GEWD-HDSDPAAWTKVVLPKIK--GWAVIFCAHVQIKDYTEILSGNGFVAVNALVWHKTN 242

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P+P     +  +A E+ +                          + + +     S ++R 
Sbjct: 243 PVPFNHKFKMLSAWESAVMGKRP-------------STKFNGKSVHNVFTYKSPSPAQR- 288

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                  +HPTQKP  L+  ++   +  GD++LDPF GS T+   A    R  I  E   
Sbjct: 289 -------IHPTQKPLGLMEELIQLMSDKGDLVLDPFGGSATTMIAAMNQNRKSITYENDP 341

Query: 256 DYIDIATKRIAS 267
               +A++R+ S
Sbjct: 342 KMYKLASQRVKS 353


>gi|254804607|ref|YP_003082828.1| putative type II DNA modification methylase [Neisseria meningitidis
           alpha14]
 gi|15982212|emb|CAC85161.1| unnamed protein product [Neisseria meningitidis]
 gi|254668149|emb|CBA04786.1| putative type II DNA modification methylase [Neisseria meningitidis
           alpha14]
          Length = 461

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 61/282 (21%), Positives = 99/282 (35%), Gaps = 39/282 (13%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
           + N   +  +  +    K+ ++  +   VL+ +P  SV L F  PPY    +  +Y    
Sbjct: 169 KVNKKTLLPHTETYPFLKNVVVNSDVRDVLQLVPEDSVHLTFTSPPYYNARDYSIY---- 224

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS--------------- 107
                         S+EAY  F +       R+ K    L V  S               
Sbjct: 225 -------------PSYEAYLVFLQEVFKEIHRITKEGRFLIVNTSPVIVPRISRAHSSKR 271

Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
           Y   F +   L  + +  ++DIVW K       R   FQ   + L +   S       + 
Sbjct: 272 YPIPFDLHHRLIQIGWEFIDDIVWMKPEYSVKNRIGGFQQHRKPLAYKPNSVTEYLMVYR 331

Query: 168 YDALKAANEDVQMRSDWLIP-------ICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
               +  + ++       I          + +    +   +K+H    P  L  RI+   
Sbjct: 332 KQTDRLLDWNMNQYDKQTIEESKVADGFETTNVWQIHPKSDKVHSAIFPADLCKRIVEYY 391

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +   D++ DPF GSGT G VAKKL R F   E  + Y +   
Sbjct: 392 SFKDDLVFDPFGGSGTLGRVAKKLGRHFFLTEKDEKYFEYMQ 433


>gi|313667109|gb|ADR73002.1| M.BspCNI [Bacillus sp. 1310(2010)]
          Length = 271

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 111/294 (37%), Gaps = 53/294 (18%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           +  + +++I+G+ + V++ +P KSVD+I  D PY    N                 WD  
Sbjct: 2   LNNYLNQVIQGDCLEVMKGIPNKSVDMILCDLPYGTTQN----------------KWDSV 45

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
              +             +R+LK NG + +  +   IF    ML N   W    +VW KS 
Sbjct: 46  IPLDLL-------WKEYKRILKDNGVIVL--TSQGIFTANLMLSNP-SWFKYKLVWEKSK 95

Query: 136 PMPNFRGRRFQ-NAHETL-IWASPSPKAKGYTFN---YDALKAANEDVQMRSDW------ 184
                  ++     HE + ++    P       +   YD     N+      D+      
Sbjct: 96  ATNFLNAKKQPLRKHEDICVFYKKQPVYNPQMRDGDPYDKGIRKNQLTGSYGDFKPVHVV 155

Query: 185 ----LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
                 P      +    +G   H TQKP  L   ++ + T  G  +LD   GSG+    
Sbjct: 156 SDGKRYPTDVIYFKTAESEGTVYHATQKPVELGRYLIRTYTNEGATVLDNACGSGSFLVS 215

Query: 241 AKKLRRSFIGIEMKQD---Y-------IDIATKRIASVQPLGNIELTVLTGKRT 284
           A   +R+FIGIE  +D   Y       I++  KRI        ++   +T +++
Sbjct: 216 AILEKRNFIGIEKNEDVELYKNEKIDLIEVCNKRIEDA--FKKVKRENITYEKS 267


>gi|297380549|gb|ADI35436.1| Modification methylase [Helicobacter pylori v225d]
          Length = 287

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 117/289 (40%), Gaps = 44/289 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +K+   +S + + ++P  SVDLI   PPY N++   +    D        +       +E
Sbjct: 4   NKVFYHSSTN-MNEVPDNSVDLIITSPPYFNIKDYTKNGTQDLQHSTQHVEDLGALEKYE 62

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVI-----------GSYHNIFRIGT-------MLQNL 121
            Y        + C R LKPNG L +             +++N             +L +L
Sbjct: 63  DYLLGLLKVWIECYRALKPNGKLCINVPLMPMLKKVLNTHYNRHIFDLHADIQHSILHDL 122

Query: 122 N--------FWILNDIVWRKSNP--------MPNFRGRRFQNAHETLIWASPSPKAKGYT 165
           N         ++L+  +W+++NP         P  R    QN  E +       K K  T
Sbjct: 123 NNTLENKPKMFLLDVYIWKRANPTKRLMFGSYPYPRNFYAQNTIEFIGVFVKDGKPKQPT 182

Query: 166 FNYDALKAANEDVQ---MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK 222
                     ++      +  W IPI + ++    K     H    P  L  R++   + 
Sbjct: 183 EEQKEQSQLTQEEWVEFTKQIWEIPIPNKNDIAFGK-----HAALMPAELARRLIRLYSC 237

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
            GD++LDPF GSGT+   AK L+R+FIG E+ ++Y  +  +++ ++   
Sbjct: 238 VGDVVLDPFSGSGTTLREAKLLKRNFIGYELYENYKPLIEQKLGNLFDF 286


>gi|294338307|emb|CBJ94346.1| Possible phage DNA methylase [Campylobacter phage CPt10]
          Length = 221

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 99/245 (40%), Gaps = 31/245 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +II  + +++LE +    VDLI  DPPY +   G+     +         WD F + + +
Sbjct: 4   EIINDDCLNILENIRN--VDLIITDPPYFVIPKGKKTNNGYDNF-----KWDSFDNMDHF 56

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             FT+ W   C + L  +  +++  S    F  G  + N N      ++W   N +    
Sbjct: 57  LKFTKEWFDLCYKKLNNDSFMYIFWS-QKYFSYGFEIFNPN----RVLLWHYRNLVLGGN 111

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G    + +E +                              ++  P  +       K  +
Sbjct: 112 GDFAYD-YEPIFVIKKGNPKLI-----------KGKHSSILNFTKPQSNF------KADK 153

Query: 202 KLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            +HPTQKP  L+  ++ +S+ K   +ILDPF G+GT+   +  L+   I IE +  Y ++
Sbjct: 154 LVHPTQKPLKLIEYLISISNLKENAVILDPFGGAGTTALASNNLKYDCITIEKETGYCNL 213

Query: 261 ATKRI 265
              R+
Sbjct: 214 INNRL 218


>gi|91204182|emb|CAJ71835.1| site-specific DNA-methyltransferase (cytosine-N4-specific)
           [Candidatus Kuenenia stuttgartiensis]
          Length = 412

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 70/311 (22%), Positives = 114/311 (36%), Gaps = 41/311 (13%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N+ +  +   ++ +  G+S  +L+++P +SVDLIF  PPY         RP++S  +   
Sbjct: 115 NKKKYILSNLRNTVGLGDSAQLLDEMPIESVDLIFTSPPYF------NARPEYSEYEEYE 168

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS-------YHN--------IFRI 114
           +   K           R  +  C RVL       +  S         N         F +
Sbjct: 169 EYLFK----------MRQIIRRCHRVLTEGRFFVMNISPVLLRRASRNESSRRIAVPFDM 218

Query: 115 GTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL--- 171
             +     +  ++DI+W K        GR  + A +       +     Y   Y      
Sbjct: 219 HRIFIEEGYDFIDDIIWLKPEGAGWATGRGRRFAADRNPLQYKAVPVTEYVLVYRKHSDL 278

Query: 172 ---KAANEDVQMRSDWLIPICSGSERLR----NKDGEKLHPTQKPEALLSRILVSSTKPG 224
                        +     I  G E+      N      HP   P AL  ++L   +  G
Sbjct: 279 LIDWFIRNHPDRNTVEASKISDGYEKTNIWKINPSTSSKHPAAFPIALAEKVLRYYSFKG 338

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
           D++LDPF GSGT G  A +L R F+  +   +YIDI  K I S + +    +  +  +  
Sbjct: 339 DVVLDPFAGSGTVGVAASELERRFVLFDNNPEYIDIIRKEIISWKNVNLNTVMWINCESV 398

Query: 285 EPRVAFNLLVE 295
           +P      L E
Sbjct: 399 KPVCKQKALFE 409


>gi|315453690|ref|YP_004073960.1| Modification methylase BamHII [Helicobacter felis ATCC 49179]
 gi|315132742|emb|CBY83370.1| Modification methylase BamHII [Helicobacter felis ATCC 49179]
          Length = 266

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 61/279 (21%), Positives = 107/279 (38%), Gaps = 56/279 (20%)

Query: 19  WKDKIIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + +++   ++++ L+  +P+  VD++   PPY                       D    
Sbjct: 5   FLNRLYASDAVAFLKSHVPSGGVDMVLTSPPY-----------------------DDLRH 41

Query: 78  FEAYDAFTRAWLLACRRVLKPNG-TLWVIGS-------YHNIFRIGTMLQNLNFWILNDI 129
           +  Y            RVLK  G  +WV+G            FR     Q + F + + +
Sbjct: 42  YNGYTFEFEKMACEIFRVLKKGGVAVWVVGDKIKNGNKSLTSFRHALYFQEIGFNVHDVM 101

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSP---------------------KAKGYTFNY 168
           ++ K N  P  R   + N++E +   S                          K    N+
Sbjct: 102 IYAKKNT-PFMRSNAYTNSYEYMFVFSKGKPKTFNPLKEATARHGVEMLVANKKADGKNH 160

Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
              +   ++    + W   +  G     N      HP   PE L    ++S +  GD++L
Sbjct: 161 KVPRELKKEKTRTNIWYYAV--GLGGTTNDKEAFKHPATYPEQLAQDHILSWSNEGDLVL 218

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           DP  GSGT+  +A   RR+FIGI++ Q+YID+A +R+  
Sbjct: 219 DPMCGSGTTCKMAFLNRRNFIGIDISQEYIDLAQQRLDK 257


>gi|229541605|ref|ZP_04430665.1| DNA methylase N-4/N-6 domain protein [Bacillus coagulans 36D1]
 gi|229326025|gb|EEN91700.1| DNA methylase N-4/N-6 domain protein [Bacillus coagulans 36D1]
          Length = 556

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 66/288 (22%), Positives = 112/288 (38%), Gaps = 41/288 (14%)

Query: 8   AINENQNSIFEWKDK---IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD 61
              +    + E+KD    IIKGN++  +  L       ++LI+ DPPYN   +   Y  +
Sbjct: 159 YYTDGTEPVTEFKDTDNLIIKGNNLLAISSLLKRYEGKINLIYIDPPYNTGTDSFGYNDN 218

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
                              +  F +  L   +++L P G ++V   YH +     ++  +
Sbjct: 219 FKR--------------STWLTFMKNRLDIAQKLLSPEGAIYVQLDYHQVHYAKVLMDEI 264

Query: 122 NFW--ILNDIVWRKSNPMPNFR-GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
                   +I+WR             +   H+T+++ S   K   +  NY       E  
Sbjct: 265 FGESNFQREIIWRIGWLSGYKTTDNNWIRNHDTILFYSKDYKRLKFIKNYIPKSEFKEIA 324

Query: 179 QMRSDWL--IPICSGSERLRNKDGEKLHPT----------------QKPEALLSRILVSS 220
               +      + + +E         +  +                QK E L+ RI+ + 
Sbjct: 325 NTNIERYPIEDVWNANEYDDLNSIAIVSFSGETVSKMLTPQDEVKGQKSEKLIERIIKAH 384

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           T  GDI+LD F G+GT+ AVA KLRR +I  E    +IDI  +R+  V
Sbjct: 385 TNEGDIVLDFFGGTGTTAAVAHKLRRRYIVCEQLDKHIDICIRRMNKV 432


>gi|304316269|ref|YP_003851414.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777771|gb|ADL68330.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 647

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 72/368 (19%), Positives = 132/368 (35%), Gaps = 57/368 (15%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKS--VDLIFADPPYNLQLNGQLY--- 58
           K    + +N N      + +I+G  IS    L  +   VDLI+ DPP+    +       
Sbjct: 48  KKVETVGKNPNG-----NMLIRGECISACAYLKEQGIEVDLIYIDPPFASGADYAKKVYI 102

Query: 59  RPDHSLVDAVTDS----------------WDKFSSFEAYDAFTRAWLLACRRVLKPNGTL 102
           R +  + +A+  +                +      E Y  +    L+A + V+    ++
Sbjct: 103 RRNPKVAEAIAQAGKELDIEELKTFEEKMYGDIWRKEDYLNWMYENLMAIKSVMSETASI 162

Query: 103 WVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
           +V   +H    +  ++  +     ++N+I+W   +           N H  + W S +  
Sbjct: 163 FVHLYWHIGHYVKILMDEIFGEDKLINEIIWYYPDNFQGNVKGFATN-HNNIFWYSKNET 221

Query: 161 AKGYT--------------------------FNYDALKAANEDVQMRSDWLIPICSGSER 194
                                           N D      E  + ++D +  I   S  
Sbjct: 222 YISNKVIIPLDKPVKRDKRIWSKELGKLVSARNDDGTLIYEEFTEKKADDVWTIGQTSVT 281

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
               +    +PTQKPE LL RI+ +ST  G ++ D F GSG + AVA KL R FI  ++ 
Sbjct: 282 KSTSNEYMDYPTQKPEELLRRIIEASTNEGMLVADFFGGSGVTAAVANKLGRRFIHCDIG 341

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISA 314
            + I     R+  +      ++  +    +  R     + +   + PG     + G+  A
Sbjct: 342 INSIQTTRDRL--IADKAEFDIYEIKDGVSLYRNPTQTMEKIKKLIPGLKNEKSLGDFWA 399

Query: 315 TVCADGTL 322
              +D  L
Sbjct: 400 GAISDSKL 407


>gi|71898330|ref|ZP_00680503.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
 gi|71731853|gb|EAO33911.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
          Length = 200

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 55/207 (26%), Positives = 83/207 (40%), Gaps = 23/207 (11%)

Query: 62  HSLVDAVTDSWD-KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           +S    +   +D  F     + A++  WL  CRRV +P G L V   +  +  +   +Q+
Sbjct: 14  NSTTKHIAPDFDCDFRDHRGFLAWSSQWLSECRRVTRPGGVLLVFTDWRMLPTLTDAVQS 73

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
              W    IV     P    +  RF++  E ++WAS          N  A          
Sbjct: 74  AG-WAWQGIVVWDKTPACRPQLGRFRSQAEFIVWASCGLM------NPKAHPV------- 119

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
                     G         EK H   KP AL+  ++     P   +LDPF GSGT+G  
Sbjct: 120 -------TPVGVFATGTAPREKRHQVGKPLALMEHLVKI-VPPTSTVLDPFAGSGTTGVA 171

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIAS 267
           A +    FIG+E+   Y D+A +R+A 
Sbjct: 172 ALRAGHQFIGMEISPWYCDVAKQRLAD 198


>gi|75675042|ref|YP_317463.1| DNA methylase N-4/N-6 [Nitrobacter winogradskyi Nb-255]
 gi|74419912|gb|ABA04111.1| DNA methylase N-4/N-6 [Nitrobacter winogradskyi Nb-255]
          Length = 252

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 65/267 (24%), Positives = 102/267 (38%), Gaps = 46/267 (17%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +I G+   ++        DLI ADPPY                   + +WD+        
Sbjct: 8   VITGDCRVLMPA--QGPFDLILADPPYG----------------DTSLAWDRRVD----- 44

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
                WL      LKP+G+LWV GS  +         + +     +IVW K N    F  
Sbjct: 45  ----GWLQLACAALKPSGSLWVFGSLRSFMATADQFADADLRYAQEIVWEKQNGTS-FHA 99

Query: 143 RRFQNAHETL--IWASPSPKAKGY-----TFNYDALKAANEDVQMRSDWLIPICSGSE-- 193
            RF+  HE +   + +  P +  Y     T +  A     +     +  +      SE  
Sbjct: 100 DRFKRVHELVAQFYRADVPWSAVYNDVQTTPDATARTVRRKMPPPHTGRIDAGHYVSEDG 159

Query: 194 ---------RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
                      RN  G  +HPT+KP  L+  ++ +S   G ++ D F GSG +G   +  
Sbjct: 160 GPRLMRSVIYARNCHGTAIHPTEKPSGLIEILIRTSCPQGGLVGDWFVGSGAAGEACRLA 219

Query: 245 RRSFIGIEMKQDYIDIATKRIASVQPL 271
            R ++G E+     ++A  RI SV P 
Sbjct: 220 GRRYVGCEIDAGMAELARGRITSVLPF 246


>gi|188995976|ref|YP_001930227.1| DNA methylase N-4/N-6 domain protein [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931043|gb|ACD65673.1| DNA methylase N-4/N-6 domain protein [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 412

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 62/310 (20%), Positives = 111/310 (35%), Gaps = 39/310 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+   +S S +E++  +S+ LI   PPY            H     V +      +   Y
Sbjct: 6   KLYVADSRS-MEEVEDESISLIITSPPY-----------WHIKDYGVENQIGYGQTLHDY 53

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYH--------------NIFRIGTMLQNLNFWILN 127
                   L C RVLKP   L +                       I +  + + F  + 
Sbjct: 54  LKDLYRVWLECFRVLKPGRRLCINVGDQFARSVIYGRYKVIPIHSEIISQCEKIGFDYMG 113

Query: 128 DIVWRKSNPMPNFRGRRFQNAHET-------LIWASPSPKAKGYTFNYDALKAANEDVQM 180
            I+W+K   M    G     ++         + +       K       A     +    
Sbjct: 114 SIIWQKKTTMNTTGGAVVMGSYPYPPNGLIEIDYEYILIFKKPGGKEKIAKDIKEKSKLT 173

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           + +W     SG  +   +  +  H    PE L  R++   +  G+ +LDPF GSGT+  V
Sbjct: 174 KEEWKE-YFSGHWKFGGEK-QINHEAMFPEELPKRLIKMFSFVGETVLDPFVGSGTTLKV 231

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           A  L+R+ IG E+ + ++DI  ++I+      +I  T +   + E +     +     IQ
Sbjct: 232 ANLLQRNAIGYEINEKFLDIIKQKIS----FKDILFTKIDVIKRETKTEVKPIDYTPSIQ 287

Query: 301 PGQILTNAQG 310
             +   + + 
Sbjct: 288 DAKPEIDPKK 297


>gi|85717646|ref|ZP_01048585.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
           Nb-311A]
 gi|85695538|gb|EAQ33457.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
           Nb-311A]
          Length = 454

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 56/282 (19%), Positives = 113/282 (40%), Gaps = 16/282 (5%)

Query: 21  DKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +++ G++     ++  +   +  + F DPPYN+++   + R   S          + S 
Sbjct: 180 HRLLCGDARDENQLVRLMNGSTAAMAFLDPPYNVRIRDVVGR-GRSKHSEFKMGVGELSD 238

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E +  F R  L A   V       +V   + +   IG + +         +        
Sbjct: 239 AE-FVKFLRDSLGAVAAVSCDGAIHYVCMDWRH---IGQLFEAGGSVYGASLNLAVWVKT 294

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
              +G  +++ HE +          G + + + ++         + W     + + R   
Sbjct: 295 NAGQGSFYRSQHELIGIFRV-----GRSQHLNNVELGRHGRSRSNVWKYAGVN-TFRAGR 348

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
            D  K HPT KP AL++  +  +T+  DI+LD F GSGTS   A+++ R    +E++  +
Sbjct: 349 LDDLKSHPTVKPVALVADAIKDATRRRDIVLDTFCGSGTSILAAERVGRRAYALELEPRF 408

Query: 258 IDIATKRIASVQPLGNI--ELTVLTGKRTEPRVAFNLLVERG 297
           +D+A +R         I  +  +   + +E     + L E+G
Sbjct: 409 VDLAIRRWQEFTGRDAIHLDSGLTFHEMSERHSTLSDLPEKG 450


>gi|221369906|ref|YP_002521002.1| DNA modification methylase [Rhodobacter sphaeroides KD131]
 gi|221162958|gb|ACM03929.1| DNA modification methylase [Rhodobacter sphaeroides KD131]
          Length = 458

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 53/289 (18%), Positives = 94/289 (32%), Gaps = 33/289 (11%)

Query: 21  DKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            ++I G++     V   +      L+F  PPY  Q +    +            WD    
Sbjct: 175 HRLICGDATDPTVVARLMDGAQASLMFTSPPYAQQRDYGAAKEK-------VGDWDALMQ 227

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR-IGTMLQNLNFWILNDIVWRKSNP 136
                 F  A +    ++L   G +   G +   +      ++  ++      VW +   
Sbjct: 228 G----VFVAAPVTEAAQLLVNLGLVHRDGEWIPYWEGWLDWMRAQDWRRFGWYVWDQGPG 283

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYT--------------FNYDALKAANEDVQMRS 182
           +P     R   +HE +   +  P+    T                        +     +
Sbjct: 284 LPGGWNGRLAPSHEFIFHFNRQPRKPNKTVESKHAGETLGGGGLRGADGTVHRKTGFGNA 343

Query: 183 DWLIPICSGSERLRNKDG----EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
                I     R+    G       HP   P AL+  +L + T PGD++ +PF GSGT  
Sbjct: 344 IQSHRIPDSVFRIMRHKGGLGAAGSHPAVFPVALVEAVLKAFTDPGDLVFEPFCGSGTQL 403

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
             A++  R    +E+   Y D+A +R  +        +T     R   R
Sbjct: 404 IAAERTGRRCSAVELDPVYCDVAVRRWETATGRAAHRITEQEEARKPAR 452


>gi|308185150|ref|YP_003929283.1| type IIS restriction enzyme M2 protein (mod) [Helicobacter pylori
           SJM180]
 gi|308061070|gb|ADO02966.1| type IIS restriction enzyme M2 protein (mod) [Helicobacter pylori
           SJM180]
          Length = 287

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 116/289 (40%), Gaps = 44/289 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +K+   NS + + ++P  SVD I   PPY N++   +    D        +       +E
Sbjct: 4   NKVFYHNSTN-MHEVPDNSVDSIITSPPYFNIKDYTKNGTQDLQHSAQHVEDLGALEKYE 62

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVI-----------GSYHNIFRIGT-------MLQNL 121
            Y        L C R LKPNG L +             +++N             +L +L
Sbjct: 63  DYLLGLLKVWLECYRALKPNGKLCINVPLMPMLKKVLNTHYNRHIFDLHADIQRSILHDL 122

Query: 122 N--------FWILNDIVWRKSNP--------MPNFRGRRFQNAHETLIWASPSPKAKGYT 165
           N         ++L+  +W+++NP         P  R    QN  E +       K K  T
Sbjct: 123 NNTLENKPKMFLLDVYIWKRTNPTKRLMFGSYPYPRNFYAQNTIEFIGVFVKDGKPKQPT 182

Query: 166 FNYDALKAANEDVQ---MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK 222
                     ++      +  W IPI + ++    K     H    P  L  R++   + 
Sbjct: 183 EEQKEQSQLTQEEWVEFTKQIWEIPIPNKNDIAFGK-----HAALMPAELARRLIRLYSC 237

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
            GD++LDPF GSGT+   AK L+R+FIG E+ ++Y  +  +++ ++   
Sbjct: 238 VGDVVLDPFSGSGTTLREAKLLKRNFIGYELYENYKPLIEQKLGNLFDF 286


>gi|15611823|ref|NP_223474.1| putative type II DNA modification enzyme (methyltransferase)
           [Helicobacter pylori J99]
 gi|4155312|gb|AAD06327.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
           [Helicobacter pylori J99]
          Length = 272

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 61/285 (21%), Positives = 113/285 (39%), Gaps = 52/285 (18%)

Query: 13  QNSIFEWKDKIIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
           + +I    +     + ++ ++ KL  +S+D+I   PPY                      
Sbjct: 6   KPNIQSLLNNFYVDSCVNFMQHKLQNESIDMILTSPPY---------------------- 43

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGS-------YHNIFRIGTMLQNLNF 123
            D   +++ Y            RV+K  G + W++G            FR     Q + F
Sbjct: 44  -DNLRNYQGYTFAFENIANEIFRVIKKGGVVVWIVGDKIKNGNKSLTSFRQALYFQQIGF 102

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP------SPKAKGYTFNYDALKAANED 177
            + + +++ K N  P  R   + NA+E +   S       +P  +    N   +   N+ 
Sbjct: 103 NMHDVMIYAKKNT-PFMRSNAYTNAYEYMFVLSKGKPKTFNPLKEPTARNGMEMLVTNKG 161

Query: 178 VQMRSDWLI----------PICSGSERLRNKDGEKL---HPTQKPEALLSRILVSSTKPG 224
              +++ ++           I   +  L     +K+   HP   PE L    ++S +   
Sbjct: 162 ADAKNNKILKELKKEKTKNNIWHYAVGLGGSTNDKIAFNHPAIFPEQLALDHILSWSNER 221

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           DI+ DP  GSGT+  +A    R+FIG+++ ++YI IA KR+   Q
Sbjct: 222 DIVFDPMCGSGTTCKMAFLHNRNFIGVDISKEYIQIAQKRLQQYQ 266


>gi|261879520|ref|ZP_06005947.1| type II restriction-modification system methylation subunit
           [Prevotella bergensis DSM 17361]
 gi|270333837|gb|EFA44623.1| type II restriction-modification system methylation subunit
           [Prevotella bergensis DSM 17361]
          Length = 460

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 62/265 (23%), Positives = 91/265 (34%), Gaps = 47/265 (17%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS-F 78
           K  II G+S + +  +P +SV LI   PPY              L D   D    F   +
Sbjct: 4   KHTIIYGDSRN-MSLIPNESVQLIVTSPPY------------WQLKDYGVDKQIGFDDLY 50

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYH--------------NIFRIGTMLQNLNFW 124
           E Y          C R L+P   L +                       I    + + F 
Sbjct: 51  EDYINNLNLVWKECFRTLEPGCRLCINIGDQFARSAYYGRYKVIPIHSEIIRFCEEIGFD 110

Query: 125 ILNDIVWRKSNPM------------PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
            +  I+W+K   M            P  RG   +   E ++    + K+        + +
Sbjct: 111 YMGSIIWQKPTSMHTTGGDTVMGSFPYPRGGIVKIDFELILLFKKTGKSAS-----VSKE 165

Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
                   R +W     S       K  +  H    PE L  R++   +  GD ILDPF 
Sbjct: 166 IKEASKLTRQEWNEYFFSHWNFGGAKQDK--HIAVFPEELPKRLIRMFSFVGDTILDPFM 223

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDY 257
           GSGT+   AK   R+ IG E+ Q +
Sbjct: 224 GSGTTALAAKNQNRNSIGYEINQKF 248


>gi|71902388|ref|ZP_00684352.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
 gi|71727876|gb|EAO30113.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
          Length = 200

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 81/207 (39%), Gaps = 22/207 (10%)

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           ++       D    F     + A++  WL  CRRV +P G L V   +  +  +   +Q+
Sbjct: 14  NNGTKHVAPDFDCDFRDHRGFLAWSSQWLSECRRVTRPGGVLLVFTDWRMLPTLTDAVQS 73

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
              W+   IV     P    +  RF++  E ++WAS          N  A          
Sbjct: 74  AG-WVWQGIVVWDKTPACRPQLGRFRSQAEFIVWASCGLM------NPKAHPV------- 119

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
                     G         EK H   KP AL+  ++     P   +LDPF GSGT+G  
Sbjct: 120 -------TPVGVFATGTAPREKRHQVGKPLALMEHLVKI-VPPASTVLDPFAGSGTTGVA 171

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIAS 267
           A +    FIG+E+   Y D+  +R+A 
Sbjct: 172 ALRAGHRFIGMELSPWYCDVTKQRLAD 198


>gi|320536136|ref|ZP_08036189.1| DNA (cytosine-5-)-methyltransferase [Treponema phagedenis F0421]
 gi|320147053|gb|EFW38616.1| DNA (cytosine-5-)-methyltransferase [Treponema phagedenis F0421]
          Length = 297

 Score =  129 bits (324), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 61/306 (19%), Positives = 115/306 (37%), Gaps = 53/306 (17%)

Query: 20  KDKII-KGNSISVLEKLPAKSVDLIFADPPYNLQ--LNGQ-------------------- 56
            + II  G+++ +++++  +S+DL+   PPY  +   NG+                    
Sbjct: 1   MNHIIACGDTLELVKQIRRESIDLLVTSPPYWAKRVYNGEGEIGSEKTPEAYVENLADFF 60

Query: 57  -------------LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKP----- 98
                              +   +   +W K+   +      +          KP     
Sbjct: 61  DTLKPHLKPSANLFINIGDTFFGSGAGAWSKYVDEDGNITQAKKDRKEKYFTTKPLQPKI 120

Query: 99  --NGTLWVIGSYHNIF-RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
             NG L+       I  R    +Q   + + +DI+W K N +P     RF N +E +   
Sbjct: 121 KQNGKLYQNKQLLLIPSRFAIEMQERGWLLRDDIIWYKPNRIPASVTDRFNNTYEHVFHF 180

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
                 K Y FN DA+K    + +M++            +  +     H    PE L+ +
Sbjct: 181 V---LNKKYFFNLDAVKVLGANSRMKN------PGDVWPINTQPLNGNHTATFPEKLVEQ 231

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           I++ ++  G  + DPF G+GT+  V  +L R+ +G E+  +Y + A  R    + LG+  
Sbjct: 232 IVLCASPEGGTVFDPFLGTGTTWIVCDRLGRNCVGFEINYEYFEFAQNRFDESRGLGDEY 291

Query: 276 LTVLTG 281
             +   
Sbjct: 292 YRICNH 297


>gi|195546627|ref|YP_002117655.1| p097 [Rhizobium phage 16-3]
 gi|102642580|gb|ABF71361.1| p097 [Rhizobium phage 16-3]
          Length = 223

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 59/272 (21%), Positives = 89/272 (32%), Gaps = 63/272 (23%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            +  G+ + V+  L    V  +  DPPY + +     R  H  +D     WD  +  EA 
Sbjct: 10  TLYLGDCMDVMPTL--GRVPAVVTDPPYGIGIAANPVRQKHEKLD-----WDSSTPTEAV 62

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +                 +W    ++     G                          
Sbjct: 63  IDYILE--------NSDEQIIWGGNYFNLPPSQGF------------------------- 89

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
                     LIW    P+        +   A  E   +   W     +   R      +
Sbjct: 90  ----------LIWDKKQPE--------NFSLAMCEMAWISRKW----PAKMFRQSVLSYD 127

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HPTQKP  L+   L    +   ++LDPF GSGT+G    K  RSFIGIE +  Y +IA
Sbjct: 128 KEHPTQKPVPLMQWCLGYL-QTTGVVLDPFMGSGTTGVACVKAGRSFIGIEREPSYFEIA 186

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
            +RI   Q   ++ +          + A   L
Sbjct: 187 CERIRKAQAQPDMFIAANDNVPAATQFAVGNL 218


>gi|228969725|ref|ZP_04130502.1| DNA methylase N-4/N-6 domain protein [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228789984|gb|EEM37789.1| DNA methylase N-4/N-6 domain protein [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 241

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 91/257 (35%), Gaps = 41/257 (15%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
            + +  ++ +P KSVD+I  D PY                   +  WD+   FE      
Sbjct: 1   MDCLEGMKMIPDKSVDMILCDLPYGT----------------TSCRWDEIIPFE------ 38

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
                   RV+K NG + +  S    F    +  N+  +    I  +  +        R 
Sbjct: 39  -PLWEQYERVIKDNGAILLTAS--QPFTTKLIASNIKLFRYEWIWKKGKHTTGFPNANRM 95

Query: 146 --QNAHETLIWASPSP--------------KAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
             +N    L++    P              + K         K  NE +           
Sbjct: 96  PLKNHENVLVFYKKLPKYYPQDLILLDKPIQKKEIKRMKIFGKRNNESLNKLHVKKYTNY 155

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
             S     ++ +  HPTQKP AL   ++ + TK G+ +LD   GS T+        R++I
Sbjct: 156 PKSIIDFPRESKTFHPTQKPVALFEYLIKTYTKEGETVLDNCMGSFTTAIACINTNRNYI 215

Query: 250 GIEMKQDYIDIATKRIA 266
           G EM ++Y  +  +R+ 
Sbjct: 216 GFEMDEEYWKLGNERVE 232


>gi|254510906|ref|ZP_05122973.1| DNA methylase [Rhodobacteraceae bacterium KLH11]
 gi|221534617|gb|EEE37605.1| DNA methylase [Rhodobacteraceae bacterium KLH11]
          Length = 261

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 58/250 (23%), Positives = 92/250 (36%), Gaps = 29/250 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL---NGQLYRPDHSLVDAVTDSWDKFSSF 78
           ++I G+++ V+ +L   +VD + +DPPY   L        R   +   A     D     
Sbjct: 18  RLILGDAMQVMPEL--GAVDHLISDPPYEQSLHDAKNSAARRHRTDGRAELSGLDFAGID 75

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           E  D FT      C      NG   V  +   + +   ++           +W K +  P
Sbjct: 76  EIRDEFTELSSAIC------NGWFVVFCTIEGVAKWADVINPSEMKYKRGCIWIKPDSTP 129

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
              G+      E  +                   A +     R +        +      
Sbjct: 130 QLNGQGPAQGAECFV------------------TAWSGSGYARWNARGKRGVYTHLTNPP 171

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           D    HPT+KP  L+  +++  T PG +ILDPF GSGT+   A    R  IG+E+   Y 
Sbjct: 172 DRHGGHPTEKPWRLMKEMILDFTNPGQLILDPFMGSGTTLVAAALTGRRAIGVELNPKYF 231

Query: 259 DIATKRIASV 268
           D+A  R+A  
Sbjct: 232 DMACLRVAKA 241


>gi|332283499|ref|YP_004415410.1| DNA methylase [Pusillimonas sp. T7-7]
 gi|330427452|gb|AEC18786.1| DNA methylase [Pusillimonas sp. T7-7]
          Length = 187

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 84/222 (37%), Gaps = 41/222 (18%)

Query: 45  ADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
            DPPY +    +  R           + DK +       +         RVL+P+     
Sbjct: 2   TDPPYLVNYRDRTGRSI---------ANDKQAD------WLGPAFKHAYRVLRPDSFCVS 46

Query: 105 IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
              ++ +       +   F ++  +V+ KS        +  Q  HE+    +    A   
Sbjct: 47  FYGWNRVDYFFKAWKEAGFRVVGHLVFAKSY---QSSAKYVQYRHESAYLLAKGKPALPV 103

Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
               D L                            G KLHPTQKP   L+ ++ + +KPG
Sbjct: 104 NPLPDLLPWKY-----------------------TGNKLHPTQKPVESLAPLVEAFSKPG 140

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
            I+LDPF GSG++   AK+  R +IGIE+   Y  +  +R+A
Sbjct: 141 AIVLDPFAGSGSTCVAAKQAGRRYIGIELDAQYHAVGLQRLA 182


>gi|300788916|ref|YP_003769207.1| adenine-specific DNA-methyltransferase [Amycolatopsis mediterranei
           U32]
 gi|299798430|gb|ADJ48805.1| putative adenine-specific DNA-methyltransferase [Amycolatopsis
           mediterranei U32]
          Length = 268

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 59/284 (20%), Positives = 97/284 (34%), Gaps = 76/284 (26%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           GN+  ++ +LP  SVD +   PPY    + +           V +      + + Y A  
Sbjct: 15  GNAAGIVAELPESSVDCVVTSPPYWGLRDYR-----------VAEQLGGERTVDEYVARL 63

Query: 86  RAWLLACRRVLKPNGTLW------VIGSYHNI---------------------------- 111
            A       VL P GT+W        GS+ +                             
Sbjct: 64  AAVFDELVHVLAPQGTVWLNLGDSYGGSWGHYVAAGSTARTAAERSRTPYGTHRPPQASH 123

Query: 112 ---------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
                    +R+   LQ   + +  +I+W K N  P     RF   +E +   +      
Sbjct: 124 RAKDLVGVPWRVTHALQERGWILEREIIWHKPNARPESVRDRFARRYENIFVLTR----- 178

Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK 222
                             R D      +    + +  G   HP +    +  R +    +
Sbjct: 179 -----------------DRRDPCETSETAVWSISSDRGRVGHPAKGTLEVARRCVRLGCR 221

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           PG  +LDPF GSGT+G  A++ R  FIGI++  D   +A +R+ 
Sbjct: 222 PGGTVLDPFSGSGTTGIAAREHRCRFIGIDLNPDCHALALQRLG 265


>gi|206602570|gb|EDZ39051.1| DNA methyltransferase [Leptospirillum sp. Group II '5-way CG']
          Length = 350

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 63/276 (22%), Positives = 97/276 (35%), Gaps = 42/276 (15%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +  +   ++  +L+     SV L+   PPY      + YR     + A+TD  D      
Sbjct: 73  RHDLFHSDAR-LLDSFVPNSVHLVLTSPPYWTL---KKYREHSKQLGAITDYRD------ 122

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR---------------IGTMLQNLNFW 124
            +         AC +VL P G L  +     + R               I    + + + 
Sbjct: 123 -FLNELDKVWRACYQVLVPGGRLVCVVGDVCLSRRKNGGEHTVVPLHASIQERCRAIGYA 181

Query: 125 ILNDIVWRK---------SNPMPNFRGRRFQNA--HETLIWASPSPKAKGYTFNYDALKA 173
            L+ IVW K          N           N+     + +     K  GY     A + 
Sbjct: 182 NLSPIVWNKIANAKYEAEGNGGGFLGKPYEPNSVIKNDIEFILMQRKMGGYRSPSVATRI 241

Query: 174 ANEDVQMRS-DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
            +     R  DW   I  G          + HP   P  L  R++   +  GD +LDPF 
Sbjct: 242 LSVIPANRHKDWFQQIWMGV----TGASTRHHPAPFPIELAERLIRMFSFVGDTVLDPFM 297

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           G+GT+   A    R+ IGIE+ Q+Y    T+RI   
Sbjct: 298 GTGTTNVAAGLWGRNSIGIEVDQEYFLFGTQRIEKA 333


>gi|254441682|ref|ZP_05055175.1| ParB-like nuclease domain family [Octadecabacter antarcticus 307]
 gi|198251760|gb|EDY76075.1| ParB-like nuclease domain family [Octadecabacter antarcticus 307]
          Length = 420

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 60/272 (22%), Positives = 103/272 (37%), Gaps = 38/272 (13%)

Query: 21  DKIIKGNSI--SVL-EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            ++I G+S    V+   L      L+  DPPY ++ +        + V A          
Sbjct: 175 HQLICGDSTSADVVGRLLGDVKPQLMVTDPPYGVKYD----PSWRNQVGAAKTKRTGKVL 230

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            +    +  AW       L P    +V  S  +   +   L    F + + I+W K   +
Sbjct: 231 NDDRADWREAW------ALFPGDVAYVWHSALHAATVAESLMATGFNVRSQIIWAKDRLV 284

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
            +     +Q  HE   +A        +            D +  + W I         ++
Sbjct: 285 LSRGDYHWQ--HEPCWYAVKKTGKGHW----------AGDRKQTTLWHISG-------KD 325

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           +D   +H TQKP   + R +++++ PG  + +PF GSGT+   A+   R   GIE+   Y
Sbjct: 326 QDATTVHGTQKPVECMRRPILNNSSPGQAVYEPFMGSGTTLIAAETTGRVCFGIELNPAY 385

Query: 258 IDIATKRIA------SVQPLGNIELTVLTGKR 283
           +D+A +R        +V P      T L  KR
Sbjct: 386 VDVAIERWQQFTGANAVLPETGETFTDLKAKR 417


>gi|162148641|ref|YP_001603102.1| DNA methylase N-4/N-6 domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787218|emb|CAP56811.1| putative DNA methylase N-4/N-6 domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 247

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 91/253 (35%), Gaps = 46/253 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++ G+   ++        DLI ADPPY                   + SWD+       
Sbjct: 2   TLLCGDCRDLMPA--QGPYDLILADPPYG----------------ETSLSWDRR------ 37

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                 WL    + L P+G+L V GS  +        +        +IVW K N    F 
Sbjct: 38  ---VEGWLPLAAQALTPSGSLSVFGSLRSFMATEVDFRAARLRHAQEIVWEKQNGSV-FH 93

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP-------------- 187
             RF+  HE ++   P+       +N  A         +R     P              
Sbjct: 94  ADRFRRVHELIVQFYPATARWQDIYNVVATTDDARARTVRRKRRPPHTGAIAAGIYRSLD 153

Query: 188 ----ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
               +    +R RN  G  +HPT+KP  LL  ++  S  P  ++ D F GSG +G   + 
Sbjct: 154 GGPRLARSVQRFRNVHGRAIHPTEKPVPLLDLLVRVSCPPDGLVGDWFAGSGAAGVACRL 213

Query: 244 LRRSFIGIEMKQD 256
             R ++G E+  D
Sbjct: 214 AGRRYVGCEIDPD 226


>gi|291296948|ref|YP_003508346.1| DNA methylase N-4/N-6 domain-containing protein [Meiothermus ruber
           DSM 1279]
 gi|290471907|gb|ADD29326.1| DNA methylase N-4/N-6 domain protein [Meiothermus ruber DSM 1279]
          Length = 313

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 59/300 (19%), Positives = 105/300 (35%), Gaps = 67/300 (22%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
             G+++ +L +L  +SV L+   PP+ LQ   ++Y     +                Y  
Sbjct: 2   YCGDALELLPQLEDQSVHLLLTSPPFALQRP-KVYGNKPQV---------------EYVD 45

Query: 84  FTRAWLLACRRVLKPNGTLW-----------VIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           +   ++      L P+G+L             + S +N   +  +  ++ +++  D  W 
Sbjct: 46  WLLEFMRIAYDKLHPSGSLVLDLGGAYEQGVPVRSLYNFRLLVRLCDDIGYFLAQDFYWH 105

Query: 133 KSNPMPNF------RGRRFQNAHETLIWASPSPK---------------AKGYTFNYDAL 171
             + +P+       R  R ++A  T+ W S +P                 K    N +  
Sbjct: 106 NPSKLPSPIEWVNKRKIRAKDAVNTVWWLSKNPWPQADLSQVLTPYSERMKKLLRNPEKY 165

Query: 172 KAANEDVQMRSD----------------WLIPICSGS---ERLRNKDGEKLHPTQKPEAL 212
               E                         IP    +   +R     G K HP + P  L
Sbjct: 166 YQPKERPSGHQISRAFAKDNGGALPSNLLSIPNSGSNDPYQRRCKALGLKPHPARFPAQL 225

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
               +   TKP D++LD F GS T+G VA+ L R +I  E+   +   +  R    +  G
Sbjct: 226 PEFFIRLLTKPNDLVLDIFAGSNTTGFVAEGLGRRWIAFELDAHFTATSALRFLPEEASG 285


>gi|297380564|gb|ADI35451.1| type III restriction enzyme [Helicobacter pylori v225d]
          Length = 572

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 77/301 (25%), Positives = 122/301 (40%), Gaps = 67/301 (22%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            + +IKGN++  L  L    AK V  I+ DPPYN   +   Y              D F 
Sbjct: 167 TNYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNY-------------NDNF- 212

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKS 134
           +  ++  F +  L   R  L  +G++++   Y+ +     ++  +       ++I+WR  
Sbjct: 213 NHSSWLVFMKNRLEVAREFLSDDGSIYINLDYNEVHYCKVLMDEIFKRENFRSEIIWRMG 272

Query: 135 NPMPNF-RGRRFQNAHETLIWASPSPKA---KGYTFN----------------------- 167
                    +++   H+T+++ S S      K Y  N                       
Sbjct: 273 FLSGYKTAAKKYIRNHDTILFYSKSDNYLFNKTYIENKDFLQLLTKNEVQNAFKKFSFPQ 332

Query: 168 -------------YDALKAANEDVQMRSDW----LIPICSGSERLRN--KDGEKLHPTQK 208
                            K   ED    + W     I I S   R+       ++    QK
Sbjct: 333 EKVDDFLTFINHENRGEKYPLEDTWNSNKWDKLNSIAIDSSVSRVDETIAIDDENFKGQK 392

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRIAS 267
           PEAL+SRIL  ST   D++LD F GSGT+ AVA K++R +IGIE + DYI+ I  +R+  
Sbjct: 393 PEALISRILEVSTNENDLVLDFFAGSGTTCAVAHKMKRRYIGIE-QMDYIETITKERLKK 451

Query: 268 V 268
           V
Sbjct: 452 V 452


>gi|255690831|ref|ZP_05414506.1| DNA (cytosine-5-)-methyltransferase [Bacteroides finegoldii DSM
           17565]
 gi|260623637|gb|EEX46508.1| DNA (cytosine-5-)-methyltransferase [Bacteroides finegoldii DSM
           17565]
          Length = 252

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 91/265 (34%), Gaps = 47/265 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + K + + V+  LP  S+DL+  DPP+ + ++                 WDK   F   
Sbjct: 11  TLYKADCLEVMPFLPESSIDLVLCDPPFGITVS----------------QWDKIIPFPEM 54

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGS--YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                      RRV K N    + GS  + ++ R G +          D VW KS     
Sbjct: 55  -------WKEIRRVRKKNAPTVLFGSEPFSSLLRCGNL-----DEFKYDWVWEKSKASNF 102

Query: 140 FRGRRFQ-NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
              ++    AHE +                                +  + + + R  NK
Sbjct: 103 LLAKKQPLKAHELISVFGRGEIPYYPIMEEGEPYGNRTKRGSNWTGVNNVPNPTFRHENK 162

Query: 199 ----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
                           +G+ +H  QKP ALL  ++ + TK GD +LD   GS ++     
Sbjct: 163 GRRYPRSVKYFKTAESEGKTIHVNQKPIALLQYLIKTYTKEGDTVLDFASGSMSTAIACI 222

Query: 243 KLRRSFIGIEMKQDYIDIATKRIAS 267
              R  I IE  + Y     +R+ +
Sbjct: 223 YTNRKCICIEKDETYFSQGEERVRN 247


>gi|117926035|ref|YP_866652.1| nuclease [Magnetococcus sp. MC-1]
 gi|117609791|gb|ABK45246.1| ParB domain protein nuclease [Magnetococcus sp. MC-1]
          Length = 452

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 62/296 (20%), Positives = 111/296 (37%), Gaps = 37/296 (12%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNG------QLYRPDHSLVDAVTDS 71
            +++ G+S+    V+  +  +   L   DPPY +  +G      +  R   SL    +DS
Sbjct: 180 HRLLCGSSLNPEDVIRLMNGERAILFATDPPYLVDYDGTNHPGSKESRKRESLNKDWSDS 239

Query: 72  ----WDKFS-SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
               WD  S   E Y+ F RA +      ++PN   +   +      +  + + +  +  
Sbjct: 240 YGVTWDDSSQGPELYEGFIRAAID---HAIEPNAAWYCWHASKRQAMLEAVWEKMGAFQH 296

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
             I+W K   +       +++    + W   +   K            N    + + W I
Sbjct: 297 QQIIWNKEKGVLTRSKYLWKHEPCLMGWIKGNMPPKI-----------NGAEFLSTVWDI 345

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
              SG ER         HPT KP    +  +    + G +  +PF GSG+     +   R
Sbjct: 346 RGLSGEERPD-------HPTPKPLDCFAIPMRQHVERGGLCYEPFSGSGSQIMAGEMTGR 398

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPG 302
               +E+   Y+D+A KR   +Q  G I     +G ++   VA    ++     PG
Sbjct: 399 RVHAMEISPVYVDVAVKRF--IQATGKIVYLDGSGGKSFEDVALERGIDLEAEPPG 452


>gi|327398792|ref|YP_004339661.1| DNA methylase N-4/N-6 domain-containing protein [Hippea maritima
           DSM 10411]
 gi|327181421|gb|AEA33602.1| DNA methylase N-4/N-6 domain protein [Hippea maritima DSM 10411]
          Length = 246

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 106/254 (41%), Gaps = 38/254 (14%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +   + + +L  +P +S+DLI  DPPY +  N +             +  D+F + +   
Sbjct: 21  LYNADCLELLPCIPQESIDLILTDPPYGVGSNERNG----------INYKDEFYNVDEVS 70

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           +F           LK N   +V  +      +    +N  F++   ++W K N     + 
Sbjct: 71  SFL-------YGSLKDNSRAYVFTAQKTFIDVAKWFENNGFYLHQTLIWYKKNLAGGTKK 123

Query: 143 RRF--QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
           R +   + +E ++                      +   +      P    +  L     
Sbjct: 124 RTYDFTSTYEQILNFHKGKPHLL------------KKDHLSDVLEFPQPQSNYTLD---- 167

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           ++ H  QKP  L+  ++  ST   DI+ DPF GSGT+ A A++L R ++ IE++ +Y  I
Sbjct: 168 KRYHIHQKPLKLIEYLIYVSTNENDIVFDPFAGSGTTAAAAERLGRRWVAIEIQPEYCQI 227

Query: 261 ATKRI---ASVQPL 271
           A +RI   AS++PL
Sbjct: 228 AKERIRRFASIKPL 241


>gi|298373714|ref|ZP_06983703.1| DNA (cytosine-5-)-methyltransferase domain protein [Bacteroidetes
           oral taxon 274 str. F0058]
 gi|298274766|gb|EFI16318.1| DNA (cytosine-5-)-methyltransferase domain protein [Bacteroidetes
           oral taxon 274 str. F0058]
          Length = 628

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 59/298 (19%), Positives = 110/298 (36%), Gaps = 50/298 (16%)

Query: 21  DKIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLY---RPDHSLVDAVTD----- 70
           + II+G  +S    L  K   VDL++ DPP+    +       R +  + +A+       
Sbjct: 63  NTIIRGECLSACAYLKEKGIKVDLVYIDPPFASGADYAKNVYLRRNPKVAEAIKQAETEI 122

Query: 71  SWDKFSSFEA-----------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
             D+   FE            Y  +    L+A + V+    +++V   +H    +  +L 
Sbjct: 123 DSDEIRGFEEKMYGDVWDKERYLNWMYENLMAIKSVMSETASIYVHLDWHIGHYVKILLD 182

Query: 120 NLN--FWILNDIVWRKSNPMPNFR-GRRFQNAHETLIWASP----------SPKAKGYTF 166
            +        +I+W              +   H+++ + S            P  K Y  
Sbjct: 183 EIFGEDNFQREIIWDIMVLSGFKTIASNWVRGHDSIFYYSKSEVRIFNKLIQPHKKEYLD 242

Query: 167 NYDALKAANEDVQ-------------MRSDWLIPICS---GSERLRNKDGEKLHPTQKPE 210
           +++ +                      +      + +     ++      +  + TQKPE
Sbjct: 243 SFNRVDENGRKYMVAHGFKRYLDEVERKGKPYGDVWNDLMSFQQQPTSAEKVDYATQKPE 302

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           ALL RI+ +S+  G +I D F GSG +  VA KL R FI  ++  + I+ A  R+   
Sbjct: 303 ALLERIIKASSNEGMLIADFFGGSGVTATVAHKLGRRFIHCDIGINSIETARDRLRKA 360


>gi|163795354|ref|ZP_02189321.1| DNA methylase N-4/N-6 [alpha proteobacterium BAL199]
 gi|163798208|ref|ZP_02192141.1| DNA methylase N-4/N-6 [alpha proteobacterium BAL199]
 gi|163798303|ref|ZP_02192231.1| DNA methylase N-4/N-6 [alpha proteobacterium BAL199]
 gi|159176416|gb|EDP61003.1| DNA methylase N-4/N-6 [alpha proteobacterium BAL199]
 gi|159176502|gb|EDP61083.1| DNA methylase N-4/N-6 [alpha proteobacterium BAL199]
 gi|159179340|gb|EDP63871.1| DNA methylase N-4/N-6 [alpha proteobacterium BAL199]
          Length = 425

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 57/247 (23%), Positives = 103/247 (41%), Gaps = 15/247 (6%)

Query: 21  DKIIKGNSISVLE---KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +I+ G++         L  +   ++FADPPYN+ + G +         A+        S
Sbjct: 165 HRIMCGDARDAAAYYTLLGDERAAMMFADPPYNVAIAGNVSSTGRHAEFAMAS---GEMS 221

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            EA+  F    L    R  +      V   + +I  + ++  ++   +LN  VW K    
Sbjct: 222 PEAFRTFLSDALGLAARYSRAGAVHDVCMDWRHIQDLLSVGTSVYDALLNLCVWDKGIGG 281

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
               G  +++ HE +          G   + + ++         + W  P  S       
Sbjct: 282 ---MGSLYRSQHELI-----CVFRAGKARHRNNVQLGRFGRNRSNVWGYPGASSLGGELR 333

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           +     HPT KP  L++  ++  TK GD++LDPF GSGT+   A++  R    IE++  Y
Sbjct: 334 RQS-ADHPTPKPIELVTDAILDVTKAGDLVLDPFGGSGTTMLAAERSSRKARLIELEGRY 392

Query: 258 IDIATKR 264
           +D++ +R
Sbjct: 393 VDLSIRR 399


>gi|332296748|ref|YP_004438670.1| DNA methylase N-4/N-6 domain protein [Treponema brennaborense DSM
           12168]
 gi|332179851|gb|AEE15539.1| DNA methylase N-4/N-6 domain protein [Treponema brennaborense DSM
           12168]
          Length = 399

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 62/281 (22%), Positives = 97/281 (34%), Gaps = 41/281 (14%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
             N +   I    + I  G+S  +L + PA+S+DL+F  PPY    N +           
Sbjct: 99  KKNGDSPKISHVINTIGLGDSEELLNETPAESIDLVFTSPPY---YNAR----------- 144

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY---------------HNIF 112
               +  + ++E Y    R  + AC RVL       +  S                   F
Sbjct: 145 --PEYADYETYEDYLNKMRKIIRACHRVLNEGRFFVINISPILIRRSSRSESSKRIAVPF 202

Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGR-RFQNAHETLIWASPSPK-----AKGYTF 166
               +     F  ++DI+W K        GR R  +A    +   P P            
Sbjct: 203 DFHRLFIEEGFEFIDDIIWVKPEGAGWATGRGRRFSADRNPLQYKPVPVTEYILVYRKKT 262

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSE----RLRNKDGEKLHPTQKPEALLSRILVSSTK 222
           +        +    +      I  G E            K HP   P +L  +++   + 
Sbjct: 263 DKLIDWHIRKHPDQKLVEQSKIEDGYEVTNIWKITPAHSKKHPAIFPVSLAEKVIQYYSF 322

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
             D+ILDPF G GT G  A KL R ++  EM  +Y+    +
Sbjct: 323 VNDVILDPFGGIGTVGDAANKLNRRYVLFEMNDEYMKEIKQ 363


>gi|266623396|ref|ZP_06116331.1| putative site-specific DNA methyl transferase [Clostridium
           hathewayi DSM 13479]
 gi|288864822|gb|EFC97120.1| putative site-specific DNA methyl transferase [Clostridium
           hathewayi DSM 13479]
          Length = 322

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 109/254 (42%), Gaps = 24/254 (9%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +I+G+   +   +   S+D I  D PY L+             +++      F+S++ + 
Sbjct: 83  LIQGDGRDI-SFIADNSIDAIITDHPYLLK-------------NSLKGGNRDFASYDLF- 127

Query: 83  AFTRAWLLACRRVLKPNGTLWVI------GSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            +T+  L    RVLK    L          +Y  ++++  M +   F     + W+K N 
Sbjct: 128 QYTQEDLDEKFRVLKKGHFLVEFLPEENGDNYEYLYQVKAMAKESGFSYYAKVAWKKGNF 187

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           + N  GR+ +N  E + + S   +A+    +    KA        S     + +  +   
Sbjct: 188 VAN-TGRKAKN-TEDIFFFSK-GRARDMRPDAKKDKAEPGTCHYMSGVKGMLPTAFDIQP 244

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
              GE++H  +KP  LL +I+   T   ++ILD + GS +    A  L R  I IE+ QD
Sbjct: 245 PPKGERVHQAEKPVKLLKQIIEFVTNEKELILDQYAGSFSLAEAALDLDRDSISIEISQD 304

Query: 257 YIDIATKRIASVQP 270
           Y +   KRI +V+ 
Sbjct: 305 YFEEGKKRIENVKK 318


>gi|153809570|ref|ZP_01962238.1| hypothetical protein BACCAC_03888 [Bacteroides caccae ATCC 43185]
 gi|149127815|gb|EDM19039.1| hypothetical protein BACCAC_03888 [Bacteroides caccae ATCC 43185]
          Length = 417

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 63/318 (19%), Positives = 118/318 (37%), Gaps = 38/318 (11%)

Query: 21  DKIIKGNSISVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +++   +S  +LE +P    +      PPY    + + Y  ++ +             +E
Sbjct: 7   NQVYNIDSRHILESIPQNIEIQTTITSPPYF---DMKDYGSENQVGYG--------QIYE 55

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHN--------IFRIGTMLQNLNFWILNDIVW 131
            Y    +       ++ K +GTLW+I              F +   L+++ +++ + I+W
Sbjct: 56  DYLNDLQNIFGQILKITKDDGTLWIIIDTFKRNNQVVSLPFDLANKLKDIGWFLQDIIIW 115

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS--------- 182
           +K   +P       Q   E +++ S SPK K           +                 
Sbjct: 116 KKDKTVPWSTNGFMQRKFEYILFFSKSPKYKSNKDKVRIYDTSQLKKWWVKYPERYNPKG 175

Query: 183 -----DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                 W  PI          D    H    P+ L++ ++  ST   DIILDPF GSGT 
Sbjct: 176 KALDEIWEFPIPVQGSW---GDEYIRHFCPLPKELVATMIQISTDENDIILDPFAGSGTV 232

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERG 297
              +  ++R++IG E+  +YI +    I         E  +L  +  +      +L  R 
Sbjct: 233 LTQSAYMKRNYIGFELNNEYIKMFENYIKRTIKKYRKEYELLEQQNNQSNFETQILNLRA 292

Query: 298 LIQPGQILTNAQGNISAT 315
            ++  ++L N     +A 
Sbjct: 293 -LKFARLLINKIEEETAR 309


>gi|117924618|ref|YP_865235.1| nuclease [Magnetococcus sp. MC-1]
 gi|117925871|ref|YP_866488.1| nuclease [Magnetococcus sp. MC-1]
 gi|117608374|gb|ABK43829.1| ParB domain protein nuclease [Magnetococcus sp. MC-1]
 gi|117609627|gb|ABK45082.1| ParB domain protein nuclease [Magnetococcus sp. MC-1]
          Length = 452

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 61/296 (20%), Positives = 111/296 (37%), Gaps = 37/296 (12%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNG------QLYRPDHSLVDAVTDS 71
            +++ G+S+    V+  +  +   L   DPPY +  +G      +  R   SL    +DS
Sbjct: 180 HRLLCGSSLNPEDVIRLMNGERAILFATDPPYLVDYDGTNHPGSKESRKRESLNKDWSDS 239

Query: 72  ----WDKFS-SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
               WD  S   E Y+ F R+ +      ++PN   +   +      +  + + +  +  
Sbjct: 240 YGVTWDDSSQGPELYEGFIRSAID---HAIEPNAAWYCWHASKRQAMLEAVWEKMGAFQH 296

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
             I+W K   +       +++    + W   +   K            N    + + W I
Sbjct: 297 QQIIWNKEKGVLTRSKYLWKHEPCLMGWIKGNMPPKI-----------NGAEFLSTVWDI 345

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
              SG ER         HPT KP    +  +    + G +  +PF GSG+     +   R
Sbjct: 346 RGLSGEERPD-------HPTPKPLDCFAIPMRQHVERGGLCYEPFSGSGSQIMAGEMTGR 398

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPG 302
               +E+   Y+D+A KR   +Q  G I     +G ++   VA    ++     PG
Sbjct: 399 RVHAMEISPVYVDVAVKRF--IQATGKIVYLDGSGGKSFEDVALERGIDLEAEPPG 452


>gi|290957416|ref|YP_003488598.1| restriction-modification system methyltransferase [Streptomyces
           scabiei 87.22]
 gi|260646942|emb|CBG70041.1| putative restriction-modification system methyltransferase
           [Streptomyces scabiei 87.22]
          Length = 592

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 73/360 (20%), Positives = 124/360 (34%), Gaps = 111/360 (30%)

Query: 20  KDKIIKGNSISVLE--KLPAKSVDLIFADPP------YNLQLNGQLYRPDHSLVDAVTDS 71
            +K+I G+++ +L    +P++SVDL++ DPP      YN+    +      + ++A  D+
Sbjct: 58  TNKLIYGDNLEILRGNLIPSQSVDLVYLDPPFNSNRSYNILFKDKSGEESPAQIEAFDDT 117

Query: 72  WDKFSSFEA--------------------------------YDAFTRAWLLACRRVLKPN 99
           W+     EA                                Y     A L+   RVLK  
Sbjct: 118 WNWSHETEALYLELLEGDHPLAIKDALEAMRRLLGENDVLAYLTMMTARLIELHRVLKST 177

Query: 100 GT------------------------------LWVIGSYHNIFR---------IGTMLQN 120
           G+                              +W   S HN  R         +     +
Sbjct: 178 GSLYLHCDPTASHYLKIVLDAIFGPEAFLSEIIWKRTSAHNRVRRFGPVHDVILHYAKGS 237

Query: 121 LNFWILNDIVWRKSNPMPNFRG----------------RRFQNAHETLIWASPSPKAKGY 164
              W    + + +     ++R                  R  + HE      P  +   Y
Sbjct: 238 SPTWNPQYVPYDQDYIDRDYRRIEETTGRRYRISDMTANRPGSRHEWKGMPPPGNRFWAY 297

Query: 165 TFNYDALKAANEDVQMRSDWL---------------IPICSGSERLRNKDGEKL-HPTQK 208
           +        A   +   +                    + +    + N+  EKL +PTQK
Sbjct: 298 SLESMERLEAEGKIVYSTRGYPQVKRYLDEMPGQLVQDVWTDIAPINNRAAEKLGYPTQK 357

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           P ALL RI+ +S+  GD++LDPF G GT+   A++L R +IGI++    ID+   R+   
Sbjct: 358 PLALLERIIATSSNEGDVVLDPFCGCGTTIDAAQRLGRRWIGIDITTLAIDLIDARLRHT 417


>gi|332299507|ref|YP_004441428.1| DNA methylase N-4/N-6 domain protein [Porphyromonas asaccharolytica
           DSM 20707]
 gi|332176570|gb|AEE12260.1| DNA methylase N-4/N-6 domain protein [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 639

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 77/375 (20%), Positives = 136/375 (36%), Gaps = 81/375 (21%)

Query: 21  DKIIKGNSISVLEKLPAKS--VDLIFADPPYNLQLNGQLY---RPDHSLVDAV------- 68
           + I++G  +S    L  +   VDL++ DPP+    +       R +  + +AV       
Sbjct: 64  NLILRGECVSACAYLKDQGIEVDLVYIDPPFASGADYAKKVYLRRNPKVAEAVAKAEKEL 123

Query: 69  -------------TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
                         D WDK    E Y  +    LLA + V+ P  +++V   +H    + 
Sbjct: 124 DNEELRAFEETMYGDVWDK----ELYLNWMYENLLAIKSVMSPTASIYVHLDWHIGHYVK 179

Query: 116 TMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
            ++  +       N+I+W           R +   H+ + + + S     Y FNY A+  
Sbjct: 180 ILMDEIFGEENFRNEIIWCYKE--RESSKRYYNRKHDCIYFYTRSDD---YVFNYRAIWE 234

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKL------------------------------ 203
               V ++    +       RLR KDG                                 
Sbjct: 235 EYSPVTLKKFKFLDQNGEPYRLRYKDGRNDPTEESENTYRQYLKDAEGTLPRDWFELAIV 294

Query: 204 ---------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                    + TQKPEALL R + +S+  G ++ D F GSG + AVA KL R FI  ++ 
Sbjct: 295 NQAATERVEYATQKPEALLDRFIKASSDEGMLVADFFGGSGVTAAVATKLGRRFIHSDVG 354

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISA 314
            + I     R+  + P    ++  +    +  R     + +   + PG    +A   +  
Sbjct: 355 VNSIQTTRDRLRKI-PGATAQILEIQDGVSLYRNPQQTMTKLRELIPGLRNEDALDKMW- 412

Query: 315 TVCADGTLISGTELG 329
               +G+++   E  
Sbjct: 413 ----EGSILDSKEGM 423


>gi|320103977|ref|YP_004179568.1| ParB domain-containing protein nuclease [Isosphaera pallida ATCC
           43644]
 gi|319751259|gb|ADV63019.1| ParB domain protein nuclease [Isosphaera pallida ATCC 43644]
          Length = 446

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/298 (19%), Positives = 102/298 (34%), Gaps = 53/298 (17%)

Query: 21  DKIIKGNS---ISVLEKLPAKSVDLIFADPPYNLQLN----------------------- 54
            +++ G+S     V   L    + L+  DPPYN+++                        
Sbjct: 163 HRLLCGDSGKPEDVDRLLNGAVIHLVNTDPPYNVRVEPRSNNAIAAGLSSFEVTHHQKMD 222

Query: 55  -----GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
                 +       L        + F S E ++    AW     RVL+     ++ G Y 
Sbjct: 223 VVRHPEKAKPTGKKLRAKDRPLANDFVSDEVFEKMLHAWFGNLARVLESGRAFYIWGGYA 282

Query: 110 NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
           N      +L+    +    I+W K +P+     + F   HE   +      A  +    +
Sbjct: 283 NCANYPPVLKATGLYFSQAIIWVKEHPV--LTRKDFMGNHEWCFYGWREGAAHVFLGPNN 340

Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
           A+            W +   +            +H T+KP  L  R +  S++PG+ +LD
Sbjct: 341 AVD----------VWSVKKVNPQ--------SMIHLTEKPVELAVRAIQYSSRPGENVLD 382

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
            F GSG++   A++  R    +E+   Y D+  +R       G     V       PR
Sbjct: 383 LFGGSGSTLIGAEQTGRKAYLMELDPLYCDVICERWCKFT--GKEAFRVDPQGNQTPR 438


>gi|254719905|ref|ZP_05181716.1| phage integrase family protein [Brucella sp. 83/13]
 gi|306838791|ref|ZP_07471623.1| phage integrase family protein [Brucella sp. NF 2653]
 gi|306406127|gb|EFM62374.1| phage integrase family protein [Brucella sp. NF 2653]
          Length = 497

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 63/251 (25%), Positives = 101/251 (40%), Gaps = 49/251 (19%)

Query: 28  SISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA------VTDSWDKFSSF 78
           ++++LEKLP              PY   ++G+ YR   S   A        D   +    
Sbjct: 279 AVAILEKLPRVKNN---------PY---VHGRAYRRTPSQRHAEAVAAHFRDRQGRTVVN 326

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM- 137
           +    + R       RVLK  G       +H +       +   F ++  IV+RK     
Sbjct: 327 DDNGHWLRPAFNQIHRVLKDGGFAISFYGWHKVDLFMDAWKTAGFRVVGHIVFRKHYASS 386

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
             F   + + A+         P                 D  + +    P          
Sbjct: 387 AKFLRYQHEQAYLLAKGNVRFP-----------------DSPIPNVIDFPYT-------- 421

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
             G +LHPTQKP   L+ ++ + TKP D++LDPF GSG++ A A+ L R +IGIE+ +++
Sbjct: 422 --GNRLHPTQKPVEALAPLIKAFTKPDDLVLDPFCGSGSTLAAAQHLGRDWIGIELDKNH 479

Query: 258 IDIATKRIASV 268
              A KR+AS+
Sbjct: 480 YATACKRLASM 490


>gi|312888140|ref|ZP_07747723.1| DNA methylase N-4/N-6 domain protein [Mucilaginibacter paludis DSM
           18603]
 gi|311299407|gb|EFQ76493.1| DNA methylase N-4/N-6 domain protein [Mucilaginibacter paludis DSM
           18603]
          Length = 385

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 59/276 (21%), Positives = 101/276 (36%), Gaps = 24/276 (8%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           K  I+ G +   +EKL   S+ L+   PPY  +++   +    +  +       +   +F
Sbjct: 19  KHSILTGAANKEMEKLNDHSISLVVTSPPYPMIEMWDDIMAAQNQSIAKEQLKGNGDIAF 78

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLW------------VIGSYHNIFRIGTMLQNLNFWIL 126
           E          +   R L P G                   Y+N  RI +    L F  +
Sbjct: 79  ELMHQELDKIWIQVERTLSPGGIACINIGDATRTINEHFSLYNNHSRIVSAFIKLGFNNM 138

Query: 127 NDIVWRKSNPMPN--------FRGRRFQNAHETLIWASPSPKAKGYTF-NYDALKAANED 177
            +I+WRK    PN          G      HE ++      K    T       + +   
Sbjct: 139 PNIIWRKQTNAPNKFMGSGMLPAGAYVTLEHEWILIFRKGGKRNFKTDAEKQLRRESAFF 198

Query: 178 VQMRSDWLIPIC--SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
            + R+ W   +    G+++       +      P  L  R++   +  GD +LDPF G+G
Sbjct: 199 WEERNVWFSDVWDLKGAKQRIESPESRNRSAAYPFELPYRLINMYSVKGDTVLDPFLGTG 258

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           T+   A    R+ IGIE+   +I I  + I +  P+
Sbjct: 259 TTTLAAIASERNSIGIEIDPSFIPIVNENIINATPV 294


>gi|327400150|ref|YP_004340989.1| DNA methylase N-4/N-6 domain-containing protein [Archaeoglobus
           veneficus SNP6]
 gi|327315658|gb|AEA46274.1| DNA methylase N-4/N-6 domain protein [Archaeoglobus veneficus SNP6]
          Length = 316

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 64/306 (20%), Positives = 117/306 (38%), Gaps = 37/306 (12%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSW 72
             +     KII G+S   +E++  +SV L+   PPY  +++  + +R   S +D +    
Sbjct: 3   EEVEATTHKIIIGDSRK-MEEVDDESVHLVVTSPPYPMIEIWDEQFRKMDSRIDDLWAKL 61

Query: 73  DKFSS-----------FEAYDAFTRAWLLACRRVLKPNG-TLWVIGS-----------YH 109
           D               ++            C RVL   G     IG            + 
Sbjct: 62  DTIGGTSEKNRIVQKIYDLMHENLAGVWKECYRVLVDGGIACINIGDATRKVNGLFRLFP 121

Query: 110 NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR--------FQNAHETL----IWASP 157
           N  R+    + + F  L  I+W+K    P ++G+           NA+ TL    I    
Sbjct: 122 NHARVIEHCERIGFVTLPYILWKKPTTKPKYKGKGAFLGSGMLPPNAYVTLDCEFILIFR 181

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
             + + +  +     A+    + R  W   I       +     +      PE +  R++
Sbjct: 182 KGEPRKFPPHDPMRYASKYTKEERDRWFTQIWDIVGTRQTLPEVERRVAAFPEEIPYRLI 241

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
              +  GD +LDPF G+GT+  VA +L R+ IG E+ ++ + +   +I   Q   +++  
Sbjct: 242 RMFSIIGDTVLDPFVGTGTTMKVAMQLNRNSIGYEIDKNLLPVIKDKIGVSQSRLDMDFR 301

Query: 278 VLTGKR 283
           V   +R
Sbjct: 302 VEIIER 307


>gi|255994270|ref|ZP_05427405.1| DNA (cytosine-5-)-methyltransferase [Eubacterium saphenum ATCC
           49989]
 gi|255993938|gb|EEU04027.1| DNA (cytosine-5-)-methyltransferase [Eubacterium saphenum ATCC
           49989]
          Length = 288

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 117/293 (39%), Gaps = 56/293 (19%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           M++KN   + + +     + + II+G+++  + K+P+ +VD++  D PY    N      
Sbjct: 1   MTRKNIKTLRDTK-----FLNNIIQGDTLEEMAKIPSGTVDMLLVDLPYGTTQN------ 49

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
                      WD     E      + W+    R++K NG +    S   +F    ML N
Sbjct: 50  ----------KWDSLIPLE------KLWM-EYNRIVKENGAMIFTAS--GLFTASLMLSN 90

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQ-NAHETLI-------WASPS-----PKAKGYTFN 167
              +     VW KS P      ++     HE ++       +  P      P  KG   N
Sbjct: 91  SKNYKYK-YVWEKSKPTNFLNAKKQPLRKHEDILVFYRRQPYYCPQMTQGEPYTKGVRKN 149

Query: 168 Y--DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
               +    N  +   +    P+     +    +G+  HPTQK   L   ++ + +K GD
Sbjct: 150 QLTGSYGEFNPTLVESNGERYPVDVLYFKTAESEGKVFHPTQKSVELARYLIRTFSKTGD 209

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQ----------DYIDIATKRIASV 268
           +ILD   G+G+    A    R+FIGIE  +          DYI+I+ KRI   
Sbjct: 210 VILDNTCGAGSFLVAAILEGRNFIGIEKNEDVALFKNKPVDYIEISKKRIKEA 262


>gi|188528172|ref|YP_001910859.1| putative type III restriction enzyme M protein [Helicobacter pylori
           Shi470]
 gi|188144412|gb|ACD48829.1| putative type III restriction enzyme M protein [Helicobacter pylori
           Shi470]
          Length = 572

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 77/301 (25%), Positives = 123/301 (40%), Gaps = 67/301 (22%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            + +IKGN++  L  L    AK V  I+ DPPYN   +   Y              D F 
Sbjct: 167 TNYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNY-------------NDNF- 212

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKS 134
           +  ++  F +  L   R  L  +G++++   Y+ +     ++  +     + ++I+WR  
Sbjct: 213 NHSSWLVFMKNRLEVAREFLSDDGSIYINLDYNEVHYCKVLMDEIFKRENLRSEIIWRMG 272

Query: 135 NPMPNF-RGRRFQNAHETLIWASPSPKA---KGYTFN----------------------- 167
                    +++   H+T+++ S S      K Y  N                       
Sbjct: 273 FLSGYKTAAKKYIRNHDTILFYSKSDNYLFNKTYIENKDFLQLLTKNEVQNAFKKFSFPQ 332

Query: 168 -------------YDALKAANEDVQMRSDW----LIPICSGSERLRN--KDGEKLHPTQK 208
                            K   ED    + W     I I S   R+       ++    QK
Sbjct: 333 EKVDDFLTFINHENRGEKYPLEDTWNSNKWDKLNSIAIDSSVSRVDETIAIDDENFKGQK 392

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRIAS 267
           PEAL+SRIL  ST   D++LD F GSGT+ AVA K++R +IGIE + DYI+ I  +R+  
Sbjct: 393 PEALISRILEVSTNENDLVLDFFAGSGTTCAVAHKMKRRYIGIE-QMDYIETITKERLKK 451

Query: 268 V 268
           V
Sbjct: 452 V 452


>gi|311977223|gb|ADQ20484.1| M2.BfaI [Bacteroides fragilis]
          Length = 461

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 64/276 (23%), Positives = 100/276 (36%), Gaps = 47/276 (17%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF- 75
                  I G+S   +  +  +SV LI   PPY              L D  +D    F 
Sbjct: 1   MSTTHLFINGDSRK-MSLVSNESVQLIVTSPPY------------WQLKDYGSDKQIGFN 47

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLW-VIGS------YHNIF-------RIGTMLQNL 121
            S+E Y          C RVL+P   L   IG       Y++ +        I    + +
Sbjct: 48  DSYEEYINNLNLVWNECFRVLEPGCRLCINIGDQFARSVYYSRYKVIPIHSEIIRFCEEV 107

Query: 122 NFWILNDIVWRKSNPM------------PNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
            F  +  IVW+K   M            P  RG   +   E ++      KA        
Sbjct: 108 GFDYMGSIVWQKPTSMHTTGGEKIMGSFPYPRGGIVKIDFEHILLFKKIGKATP------ 161

Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
             +   E  +   +      S          +K H    PE L  R++   +  GD +LD
Sbjct: 162 ISREKKEASKFTIEEWNEYFSSHWTFGGARQDK-HIAVFPEELPKRLIRMFSFVGDTVLD 220

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           PF GSGT+  VA+ L R+ IG E+ ++++    +++
Sbjct: 221 PFMGSGTTALVARNLNRNSIGYEINKNFLQFYKEKV 256


>gi|312866071|ref|ZP_07726292.1| DNA (cytosine-5-)-methyltransferase [Streptococcus downei F0415]
 gi|311098475|gb|EFQ56698.1| DNA (cytosine-5-)-methyltransferase [Streptococcus downei F0415]
          Length = 296

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 64/295 (21%), Positives = 108/295 (36%), Gaps = 52/295 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN----------------------GQLY 58
           D     +SI  L ++P  S+  I +D PY +  +                       +L+
Sbjct: 4   DCFYNEDSIVGLSRIPTNSIHSIISDIPYGIDYDEWDVLHSNTNSGLGGSSLSQTKNKLF 63

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
           +     ++  +++ DK    E Y  +  +W     RVLKP G+ +V        R+   L
Sbjct: 64  KRRGKPLNGWSEA-DKQRPLE-YQNWVSSWSKEWFRVLKPGGSAFVFAGRKYSHRVIIAL 121

Query: 119 QNLNFWILNDIVWRKSNP---------MPNFRGRRFQNAH-------------ETLIWAS 156
           +   F   + + W +            +   RG      +             E ++W  
Sbjct: 122 EEAGFTFKDMLSWERDKAPHRAQRLSKIYERRGDYENQKNWEGWRVANLRPLFEPILWLQ 181

Query: 157 PSPKAKGYTFNY---DALKAANEDVQMRSDWLIPICSGSERL---RNKDGEKLHPTQKPE 210
              K  G   N    + + A  ED   + +    + + S  +      D  K H TQKP 
Sbjct: 182 KPYKTGGTIANNVLENGVGAWYEDALKKWNINQDMSNQSNMIKVEFQPDDRKYHTTQKPI 241

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
            L+  ++   T  G +ILDPF GS T+   AK+L R +IG E      +    R+
Sbjct: 242 NLMKLLVELVTVEGQVILDPFAGSATTLLAAKELHRKYIGFEKDTKIFESGLSRL 296


>gi|308185151|ref|YP_003929284.1| adenine-specific DNA methylase [Helicobacter pylori SJM180]
 gi|308061071|gb|ADO02967.1| adenine-specific DNA methylase [Helicobacter pylori SJM180]
          Length = 754

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 70/284 (24%), Positives = 114/284 (40%), Gaps = 47/284 (16%)

Query: 15  SIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
           S  E    +IK  +   L  L     +++D I+ DPP+N          D + +D   DS
Sbjct: 374 SENEINGTLIKSENYQALNSLKNRYKETIDCIYIDPPFNTG-------SDFAYIDKFQDS 426

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--ILNDI 129
                    + +     L      L P G+ ++    +  +    +L ++       N+I
Sbjct: 427 --------TWLSLMHNRLELAYDFLSPQGSFYLHLDNNANYLGRMLLNDIFGKENFRNEI 478

Query: 130 VWRKSNPMPNFRGRRFQN---------AHETLIWASPSP----------------KAKGY 164
           +W  SN M N      +N         + + + +    P                  +  
Sbjct: 479 IWYYSNKMANSGNSFAKNTETILNYSKSEKYIFYRQKEPRSEPVLLSKREGRDGKNMRAR 538

Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
             N   +   + +  + + W IPI   +   R K+ E L  TQKPE LL RI+ +S+   
Sbjct: 539 DENGKVIYELSHERYVDTLWDIPIIGSTSTERVKNNENL--TQKPEKLLERIIQASSDEN 596

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            IILD F GS T+ AVA KL+R +IGIEM + +  +   R+  V
Sbjct: 597 SIILDFFAGSRTTCAVAHKLKRKYIGIEMGEHFDSVILPRLKKV 640


>gi|224369435|ref|YP_002603599.1| MthZ [Desulfobacterium autotrophicum HRM2]
 gi|223692152|gb|ACN15435.1| MthZ [Desulfobacterium autotrophicum HRM2]
          Length = 360

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 62/282 (21%), Positives = 106/282 (37%), Gaps = 28/282 (9%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           + ++   +S   +  + + SV+L+   PPY  +++   L+   ++ + A         +F
Sbjct: 5   RHRVHFTDSAD-MGAVESNSVNLVVTSPPYPMVEMWDDLFCSQNADIKAALSQGKGMQAF 63

Query: 79  EAYDAFTRAWLLACRRVLKPNG-TLWVIGS-----------YHNIFRIGTMLQNLNFWIL 126
           E              R+L P       IG            Y N  RI T + NL F  +
Sbjct: 64  EMMHRKLDQVWQETYRILAPGSFACINIGDATRTVDGVFQLYPNHARILTAMVNLGFSPM 123

Query: 127 NDIVWRKSNPMPN--------FRGRRFQNAHETLIWASP-----SPKAKGYTFNYDALKA 173
             I+WRK    PN          G      HE ++            A        +   
Sbjct: 124 PLILWRKQTNAPNKFMGSGMLPAGAYVTLEHEYVLILRKGDKRQFKSAGEKENRRQSALF 183

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
             E  Q  SD    +    ++L +K   K   +  P +L  R++   +   DI++DPF G
Sbjct: 184 WEERNQWFSDVWFDLKGTVQKLEDKAVRKRSGS-FPFSLPYRLINMFSVKQDIVVDPFLG 242

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
            GT+   A    R+ +G E+   + +  ++RI   +PL N E
Sbjct: 243 LGTTTLAAMAAGRNSLGFEVDPGFWEPISQRIERSKPLLNQE 284


>gi|76800785|ref|YP_325793.1| modification methylase [Natronomonas pharaonis DSM 2160]
 gi|76556650|emb|CAI48221.1| modification methylase [Natronomonas pharaonis DSM 2160]
          Length = 346

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 63/281 (22%), Positives = 110/281 (39%), Gaps = 26/281 (9%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDKF 75
            +   +I+ G++   LE+L   +V+L+   PPY  ++L   L+      V ++    D  
Sbjct: 1   MKTTHRIVAGDAR-GLEELDDDAVELVVTSPPYPMVELWDDLFADLDGTVASLLSDGDGD 59

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWV------------IGSYHNIFRIGTMLQNLNF 123
           ++FEA      A      RVL   G   V               Y N  RI    ++L F
Sbjct: 60  AAFEAMHEQLDAVWRELSRVLVDGGIACVNVGDATRTLGDGFRVYQNHARIIEAFESLGF 119

Query: 124 WILNDIVWRKS-NPMPNFRGRRFQN-------AHETLIWASPSPKAKGYTFNYDALKAAN 175
             L +++WRK  N    F G             HE ++    +   + +  N D    A 
Sbjct: 120 DPLPEVLWRKPANSTAKFMGSGMVPPNAYVTLEHEYIL-VFRNGGRRAFEPNADRRYEAA 178

Query: 176 EDVQMRSDWLIPICS---GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
              + R+ W   + +   G  +  + +  +      P  +  R++   +  GD +LDPF+
Sbjct: 179 YFWEERNQWFSDVWTDVRGETQTLDNEDLRDRSAAYPFEIPYRLINMYSTYGDTVLDPFW 238

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           G+GT+   A    R+ +G E+    ++    R A V  L  
Sbjct: 239 GTGTTTLAAMVAGRNSVGYELDDGLVEAFDDRAADVPALSR 279


>gi|298674310|ref|YP_003726060.1| DNA methylase N-4/N-6 domain-containing protein [Methanohalobium
           evestigatum Z-7303]
 gi|298287298|gb|ADI73264.1| DNA methylase N-4/N-6 domain protein [Methanohalobium evestigatum
           Z-7303]
          Length = 260

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 70/264 (26%), Positives = 116/264 (43%), Gaps = 33/264 (12%)

Query: 15  SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDAVTDS 71
           +  E K K+ + +++  ++ LP  SVD+I  DP Y   N ++     R      +   + 
Sbjct: 10  TSQEGKVKLYQDDALDFIKGLPENSVDIIVTDPAYSGMNQKMKFGNGRIVGEYKNENNNK 69

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           W  F  F   +   R +L  C +VLK N  ++++   +++  +G +L+   F + N IVW
Sbjct: 70  W--FQEFHDTEDNYRYFLSQCYKVLKDNSHIYIMFDSYSLLSLGNLLRE-YFNVKNIIVW 126

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
            K N      G  F+  HE +I+A+                  N+ +  R    IP    
Sbjct: 127 DKVN---MGMGHYFRRRHEFVIFATK----------------GNKKLISR---SIPDVWR 164

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILV-SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
            +R+ NK     +PTQKP  L   +L  S       + DPF GSG+S   A K   +FIG
Sbjct: 165 FKRIYNKC----YPTQKPVELFEAMLAGSVDNENLTVCDPFVGSGSSAIAALKKNCNFIG 220

Query: 251 IEMKQDYIDIATKRIASVQPLGNI 274
            +  +  +  +++RI S     N 
Sbjct: 221 NDTDEKALKTSSERIDSFLKTEND 244


>gi|322379738|ref|ZP_08054049.1| DNA methylase [Helicobacter suis HS5]
 gi|321147836|gb|EFX42425.1| DNA methylase [Helicobacter suis HS5]
          Length = 272

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 60/265 (22%), Positives = 104/265 (39%), Gaps = 35/265 (13%)

Query: 32  LEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
           ++++P +SV LI   PPY N++   +         ++          +E Y        L
Sbjct: 13  MDEVPDQSVALIITSPPYFNIKDYSKNGTQSSKHSESHAGDLGNIDHYETYIKEMLQVWL 72

Query: 91  ACRRVLKPNGTLWVI-----------GSYHNIFRIGT-------MLQNLNFWILNDIVWR 132
            C+RVL+PNG L +             +++N             +L++   ++L+  +W 
Sbjct: 73  ECQRVLEPNGKLCINVPMLPMLKSVYNTHYNRHIFDLKSDIEHSILKSTKLYLLDLYIWN 132

Query: 133 KSN--------PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ---MR 181
           ++N          P+      QN  E +I      K K  +          +       +
Sbjct: 133 RTNTTKKLMFGSYPHPTNFYAQNTSEFIIVFVKDGKPKKVSQERKEASRLTQQEWVEFTK 192

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
             W IPI + S+    +     H    PE L  R+    +   D++LDPF GSGT+  VA
Sbjct: 193 QIWDIPIPNKSDLAFGE-----HAAIMPELLAYRLTKMFSFVQDVVLDPFVGSGTTLKVA 247

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIA 266
           K L R +IG E+   Y  +   ++ 
Sbjct: 248 KALDRQYIGYEIYPHYERLIRAKLQ 272


>gi|281420151|ref|ZP_06251150.1| DNA (cytosine-5-)-methyltransferase [Prevotella copri DSM 18205]
 gi|281405951|gb|EFB36631.1| DNA (cytosine-5-)-methyltransferase [Prevotella copri DSM 18205]
          Length = 217

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 57/138 (41%), Positives = 81/138 (58%), Gaps = 6/138 (4%)

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
                 + NP PN   R F  + E +IWA   P  K + FNYD +K  NE+ QM   W +
Sbjct: 40  QCHHMGEDNPPPNISCRYFTYSTEFIIWARKCP-KKPHYFNYDLMKLLNENKQMTDVWRL 98

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  +  E+ + K     HPTQKP ALL RI+++ST+ G  ILDPF GSGT+G  A    R
Sbjct: 99  PAIARWEKSQGK-----HPTQKPLALLVRIILASTRHGAWILDPFSGSGTTGIAASLTGR 153

Query: 247 SFIGIEMKQDYIDIATKR 264
            ++GIE +++Y+D++ +R
Sbjct: 154 RYLGIEREKEYLDLSIRR 171


>gi|238027159|ref|YP_002911390.1| DNA modification methylase [Burkholderia glumae BGR1]
 gi|237876353|gb|ACR28686.1| DNA modification methylase [Burkholderia glumae BGR1]
          Length = 355

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 68/355 (19%), Positives = 116/355 (32%), Gaps = 112/355 (31%)

Query: 17  FEWKDKIIKGNSISVLEKL-PAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
             W D+   G+   ++  +      V  I   PPY      + Y PD     A      +
Sbjct: 1   MTWLDRSHLGDCRDLMRTMIADGVRVQTIVTSPPY---WGLRSYLPDGHPDKA--REIGQ 55

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLW-VIGSYH------------------------ 109
             +   +           R++L  +GT W  +G  +                        
Sbjct: 56  EPTLREFIDTLVEVFSLARQLLADDGTAWINMGDSYAANRSYQVASTLMNGDATNQAQAA 115

Query: 110 ------------------NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
                               +R+   LQ+  +++  DI+W K NPMP     R   AHE 
Sbjct: 116 GGRGMKVPDGLKPKDLVGQPWRLAFALQDAGWYLRQDIIWAKPNPMPESVRDRCTKAHEY 175

Query: 152 LIWASPSPKAKGYTFNYDALKAAN------------------EDVQMRSDWLIPICSGSE 193
           L   S    ++ Y F++ A++                     +D  +     +P     +
Sbjct: 176 LFLLSK---SERYYFDHQAMREPRTQDEDSSVFRGGCYVGGADDNAVLGKRRVPGNKSHK 232

Query: 194 RLRNKDGEKLHPTQ-----------------------------------------KPEAL 212
                  ++ H T+                                          PEAL
Sbjct: 233 GTTASANDEKHRTKAGLVDYAQRERDADPGDLGTRNRRSVWTIATQPYAAAHFATFPEAL 292

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           +   +++ ++PGD++ DPFFGSGT G VA++L R F+G E+  DY  +   R+  
Sbjct: 293 VEPCVLAGSRPGDVVFDPFFGSGTVGQVAQRLGRRFLGCELNPDYEPLQRDRLRQ 347


>gi|258654745|ref|YP_003203901.1| DNA methylase N-4/N-6 domain-containing protein [Nakamurella
           multipartita DSM 44233]
 gi|258557970|gb|ACV80912.1| DNA methylase N-4/N-6 domain protein [Nakamurella multipartita DSM
           44233]
          Length = 352

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 61/349 (17%), Positives = 108/349 (30%), Gaps = 108/349 (30%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +++ G++++ L  L   S+D++   PPY    +                        + +
Sbjct: 9   RLLIGDALTELRTLADASIDMVLTSPPYFRLRDY-----------GQGGQIGLEPHVDDW 57

Query: 82  DAFTRAWLLACRRVLKPNGTLW-VIGSYHNIF---------------RIGTMLQNLNFWI 125
                  +   RRVL+P G+LW  +G  +                  R+   +    + +
Sbjct: 58  VQRLLPVMRELRRVLRPTGSLWLNLGDTYATHLREGAERKSLLLGPERLALAMAADGWIL 117

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA-------------KGYTFNYDALK 172
            N IVW K+NP P     R     E +   +  P+A             +          
Sbjct: 118 RNKIVWAKTNPRPTSVPDRLACTWEPVYLFAAGPRAFFDIDAIRQPHRTRPPQVRQTGKH 177

Query: 173 AANEDVQMRSDWLIPICS----------------------GSERLRNKDGEKL--HPTQK 208
             +     R  +L P                         G        G ++  HP   
Sbjct: 178 GCSRPGAARGKYLGPNSDRLGGLTALKAQGRVGHPLGKNPGDVWQLATGGLRIGSHPAVF 237

Query: 209 PEALLSRILVSST--------------------------------------KPGDIILDP 230
           P AL  R +++                                            ++LDP
Sbjct: 238 PPALAERAILAGCPERRCSNCRTAYRRLVRRIGATAVRGALRRQCSCTGKGFEPGVVLDP 297

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI------ASVQPLGN 273
           F G+GT+   A++L R ++GIE+  DY  +  +R+       +VQP  N
Sbjct: 298 FLGAGTTALAAERLGRDWVGIELNPDYAALTIERLRQERATKAVQPDPN 346


>gi|208435275|ref|YP_002266941.1| putative type III restriction enzyme M protein [Helicobacter pylori
           G27]
 gi|208433204|gb|ACI28075.1| putative type III restriction enzyme M protein [Helicobacter pylori
           G27]
          Length = 534

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 123/301 (40%), Gaps = 67/301 (22%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            + +IKGN++  L  L    AK V  I+ DPPYN   +   Y              D F 
Sbjct: 129 TNYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNY-------------NDNF- 174

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKS 134
           +  ++  F +  L A R  L  +G++++   Y+ +     ++  +       ++I+WR  
Sbjct: 175 NHSSWLVFMKNRLEAAREFLSDDGSIYINLDYNEVHYCKVLMDEIFKRENFRSEIIWRMG 234

Query: 135 NPMPNF-RGRRFQNAHETLIWASPSPKA---KGYTFN----------------------- 167
                    +++   H+T+++ S S      K Y  N                       
Sbjct: 235 FLSGYKTAAKKYIRNHDTILFYSKSDNYLFNKTYIENKDFLPLLTKNEVQNAFKKFSFPQ 294

Query: 168 -------------YDALKAANEDVQMRSDW----LIPICSGSERLRN--KDGEKLHPTQK 208
                          + K   ED    + W     I I S   R+       ++    QK
Sbjct: 295 EKIDDFLTFINHENRSEKYPLEDTWNSNKWDKLNSIAIDSSVSRVDETIAIDDENFKGQK 354

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRIAS 267
           PE+L+ RIL  ST   D++LD F GSGT+ AVA K++R +IGIE + DYI+ I  +R+  
Sbjct: 355 PESLIQRILEVSTNENDLVLDFFAGSGTTCAVAHKMKRRYIGIE-QMDYIETITKERLKK 413

Query: 268 V 268
           V
Sbjct: 414 V 414


>gi|291515624|emb|CBK64834.1| DNA modification methylase [Alistipes shahii WAL 8301]
          Length = 408

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 62/275 (22%), Positives = 94/275 (34%), Gaps = 46/275 (16%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF-SSFEAYDAFTRAWLLACR 93
           +P KSV LI   PPY              L D  +D    F  S+E+Y          C 
Sbjct: 1   MPDKSVHLIITSPPY------------WQLKDYGSDGQIGFHDSYESYINNLNMVWAECN 48

Query: 94  RVLKPNGTLW-VIGS------YHNIF-------RIGTMLQNLNFWILNDIVWRKSNPM-- 137
           RVL     L   IG       Y+  +        I    + L    +  ++W+K   M  
Sbjct: 49  RVLHDGCRLCINIGDQFARSVYYGRYKVIPIRTEIIRFCEALGMDYMGAVIWQKQTTMNT 108

Query: 138 ----------PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
                     P  R    +  +E ++      KA              +D          
Sbjct: 109 TGGGAVMGSFPYPRNGILKIDYEFILIFKKQGKAPVPAIEQKQCSEMTKDEWNTF----- 163

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
               S        +  H    PE L  R++   +  G+ + DPF GSGT+   A+ L+R+
Sbjct: 164 --FASHWNFGGAKQDGHIAVFPEELPHRLIKMFSFAGETVFDPFMGSGTTALAARNLQRN 221

Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
            IG E+  DY     +++AS    GN+E      +
Sbjct: 222 SIGYEINPDYKKYYEEKVASSFSFGNVEYRYSNDR 256


>gi|62632223|gb|AAX89131.1| M2.BstSEI [Geobacillus stearothermophilus]
          Length = 267

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 63/248 (25%), Positives = 106/248 (42%), Gaps = 30/248 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           KI   + IS L  L  +S+DLI  DP Y   N +L     R         T++   F+ F
Sbjct: 20  KIELNDCISFLNSLKDESIDLIVTDPAYSGMNNKLKLGKGRIVGEYKQKGTENGKWFAEF 79

Query: 79  EAYDAFTRAWLLACRRVLKPN-GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           E  +     +L  C+RVLK + G ++++    ++  +G +++   F + N I W K N  
Sbjct: 80  EDSEENYHLFLQECKRVLKKDTGHIYIMFDSFSLLSLGHLMRE-YFDVKNIITWDKIN-- 136

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
               G  F+  HE +I+                  A N + +   +   P     +R+ +
Sbjct: 137 -MGMGHYFRRRHEYIIF------------------ATNGNNRKIRNRSFPDVWRFKRIHH 177

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
                 +PT KP  L   ++ +S + G  + DPF GSG+S   A K    F+G ++  + 
Sbjct: 178 SK----YPTPKPVELFQAMIYASAEEGFTVCDPFLGSGSSAIAAIKNNCRFLGCDIASNA 233

Query: 258 IDIATKRI 265
                +RI
Sbjct: 234 FTANVERI 241


>gi|225018791|ref|ZP_03707983.1| hypothetical protein CLOSTMETH_02741 [Clostridium methylpentosum
           DSM 5476]
 gi|224948519|gb|EEG29728.1| hypothetical protein CLOSTMETH_02741 [Clostridium methylpentosum
           DSM 5476]
          Length = 264

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 62/278 (22%), Positives = 94/278 (33%), Gaps = 39/278 (14%)

Query: 5   NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL 64
           +S A+ +N  ++      +   + I+ L  LP  SVD++  DPPY    N          
Sbjct: 3   DSPALGQNVPNLNPEPSGLYLMDGIAGLRSLPEHSVDMLLTDPPYGTTRNY--------- 53

Query: 65  VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
                  WD                 A R  +KP+G +              +  +    
Sbjct: 54  -------WDVPLP-------LPELWEAVRWAVKPSGAVLFFA---QCPYDKVLGASNLSM 96

Query: 125 ILNDIVWRKSNPMPNFRGRRFQ-NAHETLIWASPSPKAKGYTF---NYDALKAANEDVQM 180
           +  + VW KS        RR      E ++            F         A+  D   
Sbjct: 97  LRYEWVWYKSRCTGFLNARRAPLKKTENILVFYRRLPLYNPQFEQGKPYKKIASQRDQSP 156

Query: 181 RSDWLIPICSGSERLRNKDGE---------KLHPTQKPEALLSRILVSSTKPGDIILDPF 231
                +   SGSE  R   G           +HPTQKP  L   ++ + T PG+++ D  
Sbjct: 157 NYGKFVRSGSGSEDGRRFPGNLLSFQTVAHTVHPTQKPVELCEYLIKTYTAPGEVVADIC 216

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            GSGT+   A    R FI  E    +   AT+RI   +
Sbjct: 217 AGSGTTAIAALNTGREFICFETAPAFYGPATERITQAR 254


>gi|189345611|ref|YP_001942140.1| DNA methylase N-4/N-6 domain protein [Chlorobium limicola DSM 245]
 gi|189339758|gb|ACD89161.1| DNA methylase N-4/N-6 domain protein [Chlorobium limicola DSM 245]
          Length = 416

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 59/265 (22%), Positives = 94/265 (35%), Gaps = 46/265 (17%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF-SSFEAYDAFTRAWLL 90
           +  LP  SV L+   PPY              L D  T++   F  S+E+Y         
Sbjct: 1   MNLLPDSSVHLVITSPPY------------WQLKDYGTENQIGFHDSYESYINNLNLVWS 48

Query: 91  ACRRVLKPNGTLW-VIGS------YHNIF-------RIGTMLQNLNFWILNDIVWRKSN- 135
            C RVL P   L   IG       Y+  +        I    + + F  +  ++W+K   
Sbjct: 49  ECERVLHPGCRLCINIGDQFARSVYYGRYKVIPIRTEIIRFCETIGFDYMGAVIWQKVTT 108

Query: 136 -----------PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
                        P  R    +  +E ++       A        A +          +W
Sbjct: 109 TNTTGGASIMGSFPYPRNGILKLDYEFILLFKKPGDAPK-----PAKEQKERSAMSTEEW 163

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
               C           +  H    PE L  R++      G+ +LDPF GSGT+   AK L
Sbjct: 164 --NTCFSGHWNFAGAKQDGHIAVFPEELPHRLIRMFAFSGETVLDPFMGSGTTSLAAKNL 221

Query: 245 RRSFIGIEMKQDYIDIATKRIASVQ 269
            R+ +G E+  ++I IA +++ + Q
Sbjct: 222 DRNSVGYEINPEFIGIAKEKLRANQ 246


>gi|254884129|ref|ZP_05256839.1| gp10 [Bacteroides sp. 4_3_47FAA]
 gi|255013645|ref|ZP_05285771.1| putative site-specific DNA-methyltransferase [Bacteroides sp.
           2_1_7]
 gi|254836922|gb|EET17231.1| gp10 [Bacteroides sp. 4_3_47FAA]
          Length = 256

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 57/265 (21%), Positives = 92/265 (34%), Gaps = 47/265 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + K + + V+  LP  S+DL+  DPP+ +                    WDK       
Sbjct: 11  TLYKADCLEVMPLLPESSIDLVLCDPPFGI----------------TASQWDKIIP---- 50

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGS--YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
             F++ W    RRV K N    + GS  + ++ R G + +        D VW KS     
Sbjct: 51  --FSKMW-EEIRRVRKDNAPTALFGSEPFSSLLRCGNLAE-----FKYDWVWEKSKASNF 102

Query: 140 FRGRRFQ-NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
              ++    AHE +                                +  + + + R  NK
Sbjct: 103 LLAKKQPLKAHELISIFCNGRTPYYPIMEEGEPYENRTKRGSNWTGVNKVPNPTFRNENK 162

Query: 199 ----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
                           +G+ +H  QKP ALL  ++ + TK GD +LD   GS ++     
Sbjct: 163 GTRYPRSVKYFKTAESEGKTIHVNQKPVALLKYLIKTYTKEGDTVLDFASGSMSTAIACI 222

Query: 243 KLRRSFIGIEMKQDYIDIATKRIAS 267
              R  I IE    +     +RI +
Sbjct: 223 HTNRKCICIEKDDMHFSRGEERIRN 247


>gi|317178343|dbj|BAJ56131.1| adenine-specific DNA methylase [Helicobacter pylori F30]
          Length = 750

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 67/277 (24%), Positives = 112/277 (40%), Gaps = 47/277 (16%)

Query: 22  KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
            +IK  +   L  L     ++++ I+ DPP+N          D + +D   DS       
Sbjct: 377 TLIKSENYQALNSLKNRYKETINCIYIDPPFNTG-------SDFAYIDKFQDS------- 422

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--ILNDIVWRKSNP 136
             + +     L      L P G+ ++    +  +    +L ++       N+I+W  SN 
Sbjct: 423 -TWLSLMHNRLELAYDFLSPQGSFYLHLDNNANYLGRMLLNDIFGKENFRNEIIWYYSNK 481

Query: 137 MPNFRGRRFQN---------AHETLIWASPSP----------------KAKGYTFNYDAL 171
           M N      +N         + + + +    P                  +    N   +
Sbjct: 482 MANSGNSFAKNTETILNYSKSEKYIFYRQKEPRSEPVLLSKREGRDGKNMRARDENGKVI 541

Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
              + +  + + W I I   +   R K+ E L  TQKPE LL RI+ +S+    IILD F
Sbjct: 542 YELSHERYVDTLWDISIIGSTSTERVKNNENL--TQKPEKLLERIIQASSDENSIILDFF 599

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            GSGT+ AVA KL+R +IGIEM + +  +   R+  V
Sbjct: 600 AGSGTTCAVAHKLKRKYIGIEMGEHFDSVILPRLKKV 636


>gi|254252471|ref|ZP_04945789.1| DNA modification methylase [Burkholderia dolosa AUO158]
 gi|124895080|gb|EAY68960.1| DNA modification methylase [Burkholderia dolosa AUO158]
          Length = 344

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 72/347 (20%), Positives = 120/347 (34%), Gaps = 103/347 (29%)

Query: 17  FEWKDKIIKGNSISVLEKL-PAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
             W +   +G+   ++  +      V  I   PPY      + Y P+            +
Sbjct: 1   MTWLNHSHRGDCRDLMRAMIADGVRVQTIVTSPPY---WGLRSYLPEGHPDKH--REIGQ 55

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLW-VIGSYH------------------------ 109
             +   +           R++L  +GTLW  +G  +                        
Sbjct: 56  EPTLREFIDTLVGVFDLARQLLADDGTLWLNMGDSYAANRTYQVASTLMNGDATNQAQAA 115

Query: 110 ------------------NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
                               +R+   LQ   +++  DI+W K NPMP     R   AHE 
Sbjct: 116 GGRGMKVPDGLKPKDLVGQPWRLAFALQEAGWYLRQDIIWHKPNPMPESVRDRCTKAHEY 175

Query: 152 LIWASPSPKAKGYTFNYDALKAA----------------------------NEDVQMRSD 183
           L   S    ++ Y F+ DA+                               N +++    
Sbjct: 176 LFLLSK---SERYYFDQDAILEPVSANTHARLSQNVQAQIGSARANGGAKTNGNMKAVGR 232

Query: 184 WLIPICSGSERL-------------RNKDGEKLHPTQ---------KPEALLSRILVSST 221
            L    SG++               RN+      PTQ          PEAL+   +++ +
Sbjct: 233 KLAHDASGTKTNASFDEAMAIMPTERNRRSVWTIPTQSYSGAHFATFPEALVEPCVLAGS 292

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +PGD++ DPFFGSGT+G VA++L R FIG E+  +Y  +   R+  +
Sbjct: 293 RPGDVVFDPFFGSGTTGQVAQRLGRRFIGCELNPNYEPLQRDRLRQL 339


>gi|317179582|dbj|BAJ57370.1| putative type III restriction enzyme M protein [Helicobacter pylori
           F30]
          Length = 569

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 75/301 (24%), Positives = 121/301 (40%), Gaps = 67/301 (22%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            + +IKGN++  L  L    AK V  I+ DPPYN   +   Y              D F 
Sbjct: 164 TNYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNY-------------NDNF- 209

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKS 134
           +  ++  F +  L   R  L  +G++++   Y+ +     ++  +       ++I+WR  
Sbjct: 210 NHSSWLVFMKNRLEVAREFLSDDGSIYINLDYNEVHYCKVLMDEIFKRENFRSEIIWRMG 269

Query: 135 NPMPNF-RGRRFQNAHETLIWASPSPKA---KGYTFN----------------------- 167
                    +++   H+T+++ S S      K Y  N                       
Sbjct: 270 FLSGYKTAAKKYIRNHDTILFYSKSDNYLFNKTYIENKDFLQLLTKNEVQNAFKKFSFPQ 329

Query: 168 -------------YDALKAANEDVQMRSDW----LIPICSGSERLRN--KDGEKLHPTQK 208
                            K   ED    + W     I I S   R+       ++    QK
Sbjct: 330 EKVDDFLTFINHENRGEKYPLEDTWNSNKWDKLNSIAIDSSVSRVDETIAIDDENFKGQK 389

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRIAS 267
           PE+L+ RIL  ST   D++LD F GSGT+ AVA K++R +IGIE + DYI+ I  +R+  
Sbjct: 390 PESLIQRILEVSTNENDLVLDFFAGSGTTCAVAHKMKRRYIGIE-QMDYIETITKERLKK 448

Query: 268 V 268
           V
Sbjct: 449 V 449


>gi|308273683|emb|CBX30285.1| hypothetical protein N47_D30940 [uncultured Desulfobacterium sp.]
          Length = 429

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 56/275 (20%), Positives = 94/275 (34%), Gaps = 45/275 (16%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
             I   +S  ++ ++  KSV L+   PPY    +    R               + ++E 
Sbjct: 4   HTIYIADSR-IMSEVCDKSVHLVITSPPYWQLKDYDDIRQIG-----------FYDTYEE 51

Query: 81  YDAFTRAWLLACRRVLKPNGTLW-VIGS------YHNIF-------RIGTMLQNLNFWIL 126
           Y          C RVLK    L   IG       Y+  +        I    ++  F  +
Sbjct: 52  YINNLNLVWKECHRVLKEGCRLCINIGDQFARAAYYGRYKVIPIRTEIIKFCESAGFDYM 111

Query: 127 NDIVWRKSN------------PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
             I+W+K                P  R    +  +E ++                  K  
Sbjct: 112 GAIIWQKVTTCNTTGGASIMGSFPYPRNGILKIDYEFILLFKKPGDP------PSVEKEI 165

Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
            E  ++ +       +G      +   K H    PE L  R++       + +LDPF GS
Sbjct: 166 KEKAKLSTKEWNEYFAGHWIFPGEKQNK-HLAMFPEELPKRLIRMFCFEQETVLDPFSGS 224

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           GT+   AK L R  IG E+ + Y+ +  K++ + Q
Sbjct: 225 GTTSLAAKNLNRHSIGYEINESYLPVIKKKLGTEQ 259


>gi|295091780|emb|CBK77887.1| DNA modification methylase [Clostridium cf. saccharolyticum K10]
          Length = 303

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 50/265 (18%), Positives = 83/265 (31%), Gaps = 49/265 (18%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +   + I  L  LP  SVD++  DPPY    N                 WD       + 
Sbjct: 60  LFLMDGIEGLRSLPRHSVDMLLTDPPYGTTRNY----------------WDVPLPLIEFW 103

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
                   A R  +KP+G + +            +  +    +  + +W K         
Sbjct: 104 E-------AVRWAVKPDGAVLLF---SQCPYDKVLGASNLAMLRYEWIWYKERGTGFLNA 153

Query: 143 RRF--QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            R   + +   L++    P      +N                   P     ER+  +  
Sbjct: 154 NRAPLKKSENILVFYQKPP-----VYNPQFTYGEPYRKTHARSGSSPNYGKFERVGTESS 208

Query: 201 E----------------KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           +                 +HPTQKP  L   ++ + T  G+++ D   GSGT+   A   
Sbjct: 209 DGRRYPSNVLFVPTVSHTIHPTQKPVELCEYLIQTYTNEGEVVADICAGSGTTAVAALNT 268

Query: 245 RRSFIGIEMKQDYIDIATKRIASVQ 269
            R FI  E    +   A +RI   +
Sbjct: 269 GRRFICFENAPVFYGPAVERIEQAR 293


>gi|53714093|ref|YP_100085.1| putative site-specific DNA-methyltransferase [Bacteroides fragilis
           YCH46]
 gi|224026988|ref|ZP_03645354.1| hypothetical protein BACCOPRO_03747 [Bacteroides coprophilus DSM
           18228]
 gi|253567381|ref|ZP_04844830.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|255009155|ref|ZP_05281281.1| putative site-specific DNA-methyltransferase [Bacteroides fragilis
           3_1_12]
 gi|256840369|ref|ZP_05545877.1| DNA methylase [Parabacteroides sp. D13]
 gi|265763626|ref|ZP_06092194.1| DNA methylase [Bacteroides sp. 2_1_16]
 gi|293371328|ref|ZP_06617765.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CMC 3f]
 gi|294645298|ref|ZP_06723014.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CC 2a]
 gi|294808760|ref|ZP_06767493.1| DNA (cytosine-5-)-methyltransferase [Bacteroides xylanisolvens SD
           CC 1b]
 gi|313146904|ref|ZP_07809097.1| DNA methylase [Bacteroides fragilis 3_1_12]
 gi|52216958|dbj|BAD49551.1| putative site-specific DNA-methyltransferase [Bacteroides fragilis
           YCH46]
 gi|224020224|gb|EEF78222.1| hypothetical protein BACCOPRO_03747 [Bacteroides coprophilus DSM
           18228]
 gi|251943950|gb|EES84478.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|256737641|gb|EEU50967.1| DNA methylase [Parabacteroides sp. D13]
 gi|263256234|gb|EEZ27580.1| DNA methylase [Bacteroides sp. 2_1_16]
 gi|292633688|gb|EFF52243.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CMC 3f]
 gi|292639377|gb|EFF57679.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CC 2a]
 gi|294444057|gb|EFG12791.1| DNA (cytosine-5-)-methyltransferase [Bacteroides xylanisolvens SD
           CC 1b]
 gi|313135671|gb|EFR53031.1| DNA methylase [Bacteroides fragilis 3_1_12]
          Length = 256

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 59/271 (21%), Positives = 95/271 (35%), Gaps = 47/271 (17%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           +FE    + K + + V+  LP  S+DL+  DPP+ +                    WDK 
Sbjct: 5   VFEKDITLYKADCLEVMPLLPESSIDLVLCDPPFGI----------------TASQWDKI 48

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS--YHNIFRIGTMLQNLNFWILNDIVWRK 133
                   F++ W    RRV K N    + GS  + ++ R G + +        D VW K
Sbjct: 49  IP------FSKMW-EEIRRVRKDNAPTALFGSEPFSSLLRCGNLAE-----FKYDWVWEK 96

Query: 134 SNPMPNFRGRRFQ-NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           S        ++    AHE +                                +  + + +
Sbjct: 97  SKASNFLLAKKQPLKAHELISIFCNGRTPYYPIMEEGEPYENRTKRGSNWTGVNKVPNPT 156

Query: 193 ERLRNK----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
            R  NK                +G+ +H  QKP ALL  ++ + TK GD +LD   GS +
Sbjct: 157 FRNENKGTRYPRSVKYFKTAESEGKTIHVNQKPVALLKYLIKTYTKEGDTVLDFASGSMS 216

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           +        R  I IE    +     +RI +
Sbjct: 217 TAIACIHTNRKCICIEKDDMHFLRGEERIRN 247


>gi|317481266|ref|ZP_07940337.1| DNA methylase [Bacteroides sp. 4_1_36]
 gi|316902599|gb|EFV24482.1| DNA methylase [Bacteroides sp. 4_1_36]
          Length = 264

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 56/263 (21%), Positives = 84/263 (31%), Gaps = 43/263 (16%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + K + + V+  LP  S+DL+  DPP+                      WDK   F   
Sbjct: 11  TLYKADCLEVMPLLPESSIDLVLCDPPFGT----------------TASQWDKIIPFPEM 54

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                      RRV K N    + GS    F       NL      D VW KS       
Sbjct: 55  -------WKEIRRVRKENAPTALFGS--EPFSSLLRYSNL-DEFKYDWVWEKSKASNFLL 104

Query: 142 GRRFQ-NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK-- 198
            ++    AHE +                                +  + + + R  N+  
Sbjct: 105 AKKQPLKAHELISVFCKGKTPYYPIMEEGEPYGNRTKRGSNWTGINNVPNPAFRNENRGI 164

Query: 199 --------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
                         +G+ +H  QKP ALL  ++ + TK GD +LD   GS ++       
Sbjct: 165 RYPRSVKYFKTAESEGKTIHVNQKPIALLQYLIKTYTKEGDTVLDFASGSMSTAIACIYT 224

Query: 245 RRSFIGIEMKQDYIDIATKRIAS 267
            R  I IE  + Y      R+ +
Sbjct: 225 NRKCICIEKDEKYFSQGEGRVRN 247


>gi|51980192|ref|YP_077259.1| Cytosine methylase, similar to N4-cytosine methylase [Sulfolobus
           virus STSV1]
 gi|51890325|emb|CAH04249.1| Cytosine methylase, similar to N4-cytosine methylase [Sulfolobus
           virus STSV1]
          Length = 297

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 92/267 (34%), Gaps = 37/267 (13%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I+ G+S + ++++   SV L+   PPY                +A  D  D F  ++ 
Sbjct: 5   NLIVFGDSRN-MKEISDGSVHLVVTSPPYF---------------NAPFDYPDLFKDYDE 48

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGS--------YHNIFRIGTMLQNLNFWILNDIVWR 132
           +    R       RVL        +          Y     I  ++    F   + I+W+
Sbjct: 49  FLGLIRDVARELYRVLAEGRIACFVTQDVRINGKLYPVTADILRIMMEEGFTYRDRIIWK 108

Query: 133 KSNPM-------------PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
           K                 P        N +E ++                     +    
Sbjct: 109 KPEGYVRISRRSGVQLQHPYPMYFYPDNIYEEILIMQKGEYKYPKNKAELESSRIDIQEF 168

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
            R  W + +   +  L  K   +      PE +  R++   +  G+ +LDPF GS T+  
Sbjct: 169 NREKWYLSVWEITNVLPVKGRIEEGIAAFPEEIPYRLIKLFSYVGETVLDPFMGSATTLK 228

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIA 266
           VA +LRR  +G E+  + +D+  K++ 
Sbjct: 229 VAVELRRKAVGYEIDLELLDVVKKKLG 255


>gi|294629192|ref|ZP_06707752.1| DNA (cytosine-5-)-methyltransferase [Streptomyces sp. e14]
 gi|292832525|gb|EFF90874.1| DNA (cytosine-5-)-methyltransferase [Streptomyces sp. e14]
          Length = 369

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 64/319 (20%), Positives = 104/319 (32%), Gaps = 82/319 (25%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G+S+ +L +LPA SVDL    PP+ L         D                 E Y A+ 
Sbjct: 25  GDSLELLGELPANSVDLFMTSPPFPLLRKKAYGNKDQ----------------EEYVAWL 68

Query: 86  RAWLLACRRVLKPNGTLW-----------VIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
             +    +  LKP G+L             + S H    +   + +L +++  +  W   
Sbjct: 69  VKFAKLAKDALKPTGSLVIDIGGAYQQGEPVRSLHQFRALLAFVDDLGYFLAEEFYWYNP 128

Query: 135 NPMPNF------RGRRFQNAHETLIWASPSPKAKGYT---------------FNYDALKA 173
             +P+       R  R ++A  T+ W S + + K                   +  A   
Sbjct: 129 AKLPSPIEWVNKRKYRAKDAVNTVWWLSKTERPKADVGKVRVPYSKAMQQLLKDPAAYYR 188

Query: 174 ANEDVQMRSDW----------------LIPIC------------------SGSERLRNKD 199
             E     +                   IP                        R     
Sbjct: 189 PKERPSHHNIGKAFGVDNGGALPSNLLEIPYLEDLLEIPNLLELPNSQSNDAYLRTLKAM 248

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
               HP + P  L +  +   T PGD+++D F GS T+G  A+ L R+++  E+   Y  
Sbjct: 249 ERPGHPARFPIKLPTFFIKMLTDPGDVVVDFFGGSNTTGRAAEDLGRNWLSFELDPAYAA 308

Query: 260 IATKRIASVQPLGNIELTV 278
           ++  R    Q L  IE  V
Sbjct: 309 LSAVRFMEGQDLKAIERAV 327


>gi|42557717|emb|CAF28692.1| putative type II DNA modification methylase [uncultured
           crenarchaeote]
          Length = 289

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 63/272 (23%), Positives = 105/272 (38%), Gaps = 35/272 (12%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +++ I  G+  ++LEKLPA S+ L    PPY   ++  ++   +      T    + S+ 
Sbjct: 6   FENSIQTGDCKNILEKLPADSIQLTITSPPYRNAIDYSMHVEGNGYYRGTT----RISTT 61

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYH---------NIFRIGTMLQNLNFW-ILND 128
           E  +     +     RV +  G   ++                 +  ++Q    W +  +
Sbjct: 62  EYLNDMIEIFNNHVFRVTREGGYCCIVIGNEVVNGSILPLPHMLLSNLVQPFGNWSLHEE 121

Query: 129 IVWRKSNPM----------PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
           I+W K              P  +  R    HE ++         G T   DAL A +E+ 
Sbjct: 122 IIWHKVTGGTNRYGSFVINPYPKYFRANIMHEFILVLRKGNVKSGRTQRDDALPAKHEEF 181

Query: 179 QM---RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
                 S W I             G   HP   PE +  R++   +  GD+ILDPF GSG
Sbjct: 182 TKEIANSVWHIAPVP--------PGFINHPCPFPEEIPYRLMKLYSYEGDVILDPFNGSG 233

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            +  VA    R +IGI++  +Y  +A  R+  
Sbjct: 234 QTTKVAHHFLRGYIGIDIINEYAKLAKGRLHD 265


>gi|46200906|ref|ZP_00207895.1| COG0863: DNA modification methylase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 422

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 55/281 (19%), Positives = 99/281 (35%), Gaps = 34/281 (12%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G+S     V   L      L+  DPPY ++ +            A T       
Sbjct: 173 RHRLLCGDSTSATDVERLLAGAMPHLMVTDPPYGVEYDPTWRNEAGVSSSARTGK----V 228

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           + +    +  AW       L P    +V  S      +   L+   F +   I+W K   
Sbjct: 229 ANDDRADWREAW------ALFPGEVAYVWHSAIYTRTVADSLEANGFKLRAQIIWSKPRF 282

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +       +Q  HE   +A        +                 + W I          
Sbjct: 283 VLGRGDYHWQ--HEPCWYAVRKNGTGHWQ----------GARDQATIWAIG------NNG 324

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           ++D   +H TQKP   + R +++++  GD + +PF GSGT+   A+   R  + +E+   
Sbjct: 325 DEDEATVHGTQKPVECMRRPILNNSAEGDAVYEPFAGSGTTVIAAETTGRICVAMELNPA 384

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERG 297
           Y D+   R    Q L   +  +    R+   +A   +V  G
Sbjct: 385 YADVIVGRW---QKLTGQKAVLDGDGRSFEEIAAGKVVSAG 422


>gi|237719964|ref|ZP_04550445.1| gp10 [Bacteroides sp. 2_2_4]
 gi|229450516|gb|EEO56307.1| gp10 [Bacteroides sp. 2_2_4]
          Length = 256

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 59/271 (21%), Positives = 95/271 (35%), Gaps = 47/271 (17%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           +FE    + K + + V+  LP  S+DL+  DPP+ +                    WDK 
Sbjct: 5   VFEKDITLYKADCLEVMPLLPESSIDLVLCDPPFGI----------------TASQWDKI 48

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS--YHNIFRIGTMLQNLNFWILNDIVWRK 133
                   F++ W    RRV K N    + GS  + ++ R G + +        D VW K
Sbjct: 49  IP------FSKMW-EEIRRVRKDNAPTALFGSEPFSSLLRCGNLAE-----FKYDWVWEK 96

Query: 134 SNPMPNFRGRRFQ-NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           S        ++    AHE +                                +  + + +
Sbjct: 97  SKASNFLLAKKQPLKAHELISIFCNGRTPYYPIMEEGEPYENRTKRGSNWTGVNKVPNPT 156

Query: 193 ERLRNK----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
            R  NK                +G+ +H  QKP ALL  ++ + TK GD +LD   GS +
Sbjct: 157 FRNENKGTRYPRSVKYFKTAESEGKTIHVNQKPIALLKYLIKTYTKEGDTVLDFASGSMS 216

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           +        R  I IE    +     +RI +
Sbjct: 217 TAIACIHTNRKCICIEKDDMHFLRGEERIRN 247


>gi|119355923|ref|YP_910567.1| DNA methylase N-4/N-6 domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119353272|gb|ABL64143.1| DNA methylase N-4/N-6 domain protein [Chlorobium phaeobacteroides
           DSM 266]
          Length = 429

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 63/292 (21%), Positives = 102/292 (34%), Gaps = 48/292 (16%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF-SSFEAYDAFTRAWLL 90
           +  LP  SV LI   PPY              L D  T++   F  S+E+Y         
Sbjct: 1   MNLLPDSSVHLIITSPPY------------WQLKDYGTENQIGFHDSYESYINNLNLVWS 48

Query: 91  ACRRVLKPNGTLW-VIGS------YHNIF-------RIGTMLQNLNFWILNDIVWRKSN- 135
            C RVL P   L   IG       Y+  +        I    + + F  +  ++W+K   
Sbjct: 49  ECERVLHPGCRLCINIGDQFARSVYYGRYKVIPIRTEIIRFCETIGFDYMGAVIWQKVTT 108

Query: 136 -----------PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
                        P  R    +  +E ++       A        + +          +W
Sbjct: 109 TNTTGGASIMGSFPYPRNGILKLDYEFILLFKKQGDAPK-----PSKELKERSAMTTEEW 163

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
               C           +  H    PE L  R++      G+ +LDPF GSGT+   AK L
Sbjct: 164 --NTCFSGHWNFAGAKQDGHIAVFPEDLPHRLIRMFAFVGETVLDPFMGSGTTSLAAKNL 221

Query: 245 RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
            R+ +G E+  ++I IA +++ S Q        V      +  +  + ++ER
Sbjct: 222 DRNSVGYEINPEFIGIAREKLNSNQTDFAGTEYVFQHDTLKGDI--SEMIER 271


>gi|299769744|ref|YP_003731770.1| phage DNA methylase [Acinetobacter sp. DR1]
 gi|298699832|gb|ADI90397.1| phage DNA methylase [Acinetobacter sp. DR1]
          Length = 253

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 59/274 (21%), Positives = 94/274 (34%), Gaps = 44/274 (16%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            + K +++ G+ +  + ++   +VD+I  D PY                      WD   
Sbjct: 1   MKNKIQLMLGDCLERMREVETGTVDMILCDLPYGT----------------TCCKWDVVI 44

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            F       +       RV+K NG + +  +    F       NL  +    I  + +  
Sbjct: 45  PF-------KQLWEQYERVIKNNGAIVLFSA--QPFTSILATSNLKLFRYEWIWEKPAAT 95

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW---------LIP 187
                  +   AHE ++    S      TFN             R D           I 
Sbjct: 96  GFLNADIQPLRAHENILVFYKSLP----TFNPQKTFGHKRKTAKRKDIGSALYGKQMNIK 151

Query: 188 ICSGSERL------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
               +ER        ++D   +H TQKP  L   ++ S T PG+++LD   GSGT+G   
Sbjct: 152 DYDSTERYPRSVQIFSRDFPVVHDTQKPVDLCEFLIRSYTNPGELVLDNTMGSGTTGVAC 211

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
               R+FIGIE        A  RI       + +
Sbjct: 212 VNTGRNFIGIEKDIKTFQTAEDRIKEAHKNKDKQ 245


>gi|315586028|gb|ADU40409.1| site-specific DNA-methyltransferase (cytosine-N(4)-specific)
           [Helicobacter pylori 35A]
          Length = 287

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 64/289 (22%), Positives = 111/289 (38%), Gaps = 44/289 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +K+   +S + + ++   SVDLI   PPY N++   +    D        +       +E
Sbjct: 4   NKVFYHSSTN-MNEVLDNSVDLIITSPPYFNIKDYTKNGTQDLQHSAQHVEDLGALEKYE 62

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVI-----------GSYHNIFRIGTMLQ--------- 119
            Y        L C R LKPNG L +             +++N                  
Sbjct: 63  DYLLGLLKVWLECYRALKPNGKLCINVPLMPMLKKVLNTHYNRHIFDLHADIQHSILYDL 122

Query: 120 ------NLNFWILNDIVWRKSNP--------MPNFRGRRFQNAHETLIWASPSPKAKGYT 165
                     ++L+  +W+++NP         P  R    QN  E +       K K  T
Sbjct: 123 NNTLENKPKMFLLDVYIWKRTNPTKRLMFGSYPYPRNFYAQNTIEFIGVFVKDGKPKQPT 182

Query: 166 FNYDALKAANEDVQ---MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK 222
                     ++      +  W IPI + ++    K     H    P  L  R++   + 
Sbjct: 183 KEQKEQSQLTQEEWVEFTKQIWEIPIPNKNDIAFGK-----HAALMPAELARRLIRLYSC 237

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
            GD++LDPF GSGT+   AK L+R+FIG E+ ++Y  +  +++ ++   
Sbjct: 238 VGDVVLDPFSGSGTTLREAKLLKRNFIGYELYENYKPLIEQKLGNLFDF 286


>gi|260588436|ref|ZP_05854349.1| DNA (cytosine-5-)-methyltransferase [Blautia hansenii DSM 20583]
 gi|260541310|gb|EEX21879.1| DNA (cytosine-5-)-methyltransferase [Blautia hansenii DSM 20583]
          Length = 230

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 91/254 (35%), Gaps = 43/254 (16%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           +  +  +S+D+I  D PY                      WD   S E            
Sbjct: 1   MNNISDESIDMILCDLPYGT----------------TKCKWDSIISLEEL-------WKQ 37

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
             R++K NG + +       F       NL       I  +          +    AHE 
Sbjct: 38  YCRIIKENGAIVLFA--QTPFDKVLGASNLKMLRYEWIWEKTQATGHLNAKKMPMKAHEN 95

Query: 152 LI-WASPSPKAKG---------YTFNYDALKAANEDVQMRSDWLIPICSGSERLR----- 196
           L+ +    P             +++        N ++  + +  I     + R       
Sbjct: 96  LLVFYKKLPTYNPQMTEGHEPIHSYTKYITTQNNTEIYGKMNKEISGGGETIRYPRSVLT 155

Query: 197 ---NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
              +K    LHPTQKP AL   ++ + T  GD++LD   GSGT+G   K L R FIGIE 
Sbjct: 156 FPSDKQTCYLHPTQKPLALCEYMVKTYTNEGDLVLDNCMGSGTTGLSCKNLNRRFIGIEK 215

Query: 254 KQDYIDIATKRIAS 267
           ++ Y +IA  RI +
Sbjct: 216 EEKYFEIAKDRINN 229


>gi|308189375|ref|YP_003933505.1| DNA methylase [Pantoea vagans C9-1]
 gi|308055990|gb|ADO08159.1| putative DNA methylase [Pantoea vagans C9-1]
          Length = 909

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 89/221 (40%), Gaps = 43/221 (19%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + ++GNS+ ++   P  S+D I  DPPY +       R   S+   V+D W   +S E +
Sbjct: 3   RFMRGNSVEIMANFPDNSIDFILTDPPYLVGFKD---RSGRSIAGDVSDEWVLPASREMF 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK N        ++ +       +   F ++  +V+ K+      F
Sbjct: 60  ------------RVLKNNSLAVSFYGWNRVDIFMQAWKAAGFRVVGHLVFTKTYASKSAF 107

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G + ++A+       P P                          +P     +      G
Sbjct: 108 VGYQHESAYLLAKGHPPLPAKP-----------------------LPDVMPWQYT----G 140

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
            + HPT+KP ++L  ++ + TKPG ++LDPF GSG++   A
Sbjct: 141 NRHHPTEKPVSVLQPLIETFTKPGGLVLDPFAGSGSTCVAA 181


>gi|291535300|emb|CBL08412.1| DNA modification methylase [Roseburia intestinalis M50/1]
          Length = 264

 Score =  125 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 87/257 (33%), Gaps = 39/257 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +   + I  L  LP  SVD++  DPPY    N                 WD         
Sbjct: 21  LFLMDGIEGLRSLPKHSVDMLLTDPPYGTTRN----------------FWDVPLP----- 59

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
                   A +  +KP+G +              +  +    +  + VW KS        
Sbjct: 60  --LPELWEAVKWAVKPDGAVLFFA---QCPYDKVLGASNLSMLRYEWVWYKSRCTGFLNA 114

Query: 143 RRF--QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW--LIPICSGSERLRNK 198
           RR   +     L++    P            K  +       ++   +   SGSE     
Sbjct: 115 RRAPLKRTENILVFYQKLPYYDPQFEQGKPYKKISRTGDNSPNYGKFLRSSSGSEDGLRF 174

Query: 199 DGE---------KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
            G           +HPTQKP  L   ++ + T+PG+++ D   GSGT+   A  + R F+
Sbjct: 175 PGNLLSFSSVQRTVHPTQKPVELCEYLIKTYTRPGEVVADICAGSGTTAVAALNMGRRFV 234

Query: 250 GIEMKQDYIDIATKRIA 266
             E    +   AT+RI 
Sbjct: 235 CFETAPAFYAPATERIR 251


>gi|13542295|ref|NP_111983.1| adenine specific DNA methylase [Thermoplasma volcanium GSS1]
 gi|14325729|dbj|BAB60632.1| modification methylase [Thermoplasma volcanium GSS1]
          Length = 616

 Score =  125 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 75/347 (21%), Positives = 129/347 (37%), Gaps = 72/347 (20%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLY 58
           S   +LA    +    EWK+K+I G++  V+  L  +    + +I+ADPP+    N  + 
Sbjct: 33  SNIGTLAQFRKEPENSEWKNKLIWGDNKYVMASLLPEFRGKIKMIYADPPFFTGTNMNIT 92

Query: 59  ----------RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
                      P      A  + W +  S  +Y  +     +  + +L  +G++WV   Y
Sbjct: 93  LEVGDEEAVKEPSAIEEIAYRNMWKEGPS--SYLQYMYDRFVLMKDLLSEDGSIWVRSDY 150

Query: 109 HNIFRIGTMLQNLNFW--ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
           H    I  +L  +  +    N+I+  +     +   +R+  A ++L + S +        
Sbjct: 151 HYSHYIKGILDEIFGYENFRNEIIINRIKKS-DSGAKRYNTATDSLFFYSKTDNYFFKNV 209

Query: 167 NYDALKAANEDVQMR---------------------SDWLI-------PICSGSERLRNK 198
                   NE                            W          I  G  RL  K
Sbjct: 210 KKKLEITKNERWHSMDSQGQGGPRTIFGKTMYPPSGRHWTFGQENIDRMIAEGRIRLNPK 269

Query: 199 DGE--------------------------KLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
            G+                            +PT+  E LL RI++S+T+ GD+I D F 
Sbjct: 270 TGKPEYKLEETEEQILDSNWTDIPGYSFSTGYPTENAEQLLERIILSATEKGDLIADFFS 329

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
           GSGT+ AVA+KL R +IG ++ +  +    KR+  +      E+  L
Sbjct: 330 GSGTTVAVAEKLGRRWIGADIGRFSVHTIRKRLLDIPHCKPFEVLNL 376


>gi|317123215|ref|YP_004097327.1| DNA methylase N-4/N-6 domain protein [Intrasporangium calvum DSM
           43043]
 gi|315587303|gb|ADU46600.1| DNA methylase N-4/N-6 domain protein [Intrasporangium calvum DSM
           43043]
          Length = 306

 Score =  125 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 58/282 (20%), Positives = 102/282 (36%), Gaps = 35/282 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYN----LQLNGQLYRPDHSLVDAVTDSWDK--- 74
           +++  + ++ L + P KS+  +  DPPY          Q  R     V  +  ++D    
Sbjct: 10  ELVHTDCLTWLRRRPEKSIHAVVTDPPYGATEYTHEQQQKLRAGKGGVWRIPPAFDGHRR 69

Query: 75  ----------FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
                      +  +    F  AW    R  L P   + V  +      I   L      
Sbjct: 70  APLPRFTTMSRADLDYMHDFFYAWAEVLRPTLVPGAHVMVACNPLVSPYISMALTKAGLE 129

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF--------------NYDA 170
              +IV      M    G R +NAHE  + A+  P+++   +              N   
Sbjct: 130 RRGEIVRLV---MTMRGGDRPKNAHEEFVDATVMPRSQWEPWLLYREPLECRTVADNLRK 186

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK-PGDIILD 229
            K         +     +       + +     HP+ KP++ L  ++ +S      IILD
Sbjct: 187 YKTGALRRISDAQPFGDVIKSHPTRKLERQIANHPSLKPQSFLRAVVRASLPLGEGIILD 246

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           PF GSG++ A A+ +    IG+E   +Y ++A + I  +  L
Sbjct: 247 PFAGSGSTLAAAEAIGYQSIGLERDAEYFEVARQAIPQLARL 288


>gi|257075994|ref|ZP_05570355.1| MthZ [Ferroplasma acidarmanus fer1]
          Length = 345

 Score =  125 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 113/294 (38%), Gaps = 26/294 (8%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDKF 75
            +   KII  ++   ++++ ++SVDL+   PPY  +++   ++   +  +       +  
Sbjct: 1   MKTLHKIIYSDARE-MKEVKSESVDLMITSPPYPMIKMWDDMFSVQNPEIAEALREENGE 59

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNG-TLWVIGS-----------YHNIFRIGTMLQNLNF 123
            +FE  +           RVLK  G     IG            Y N  RI     +L F
Sbjct: 60  KAFELMNKELDKVWKEVYRVLKIGGIACINIGDATRSLGGKFQIYTNHARILNYCLSLGF 119

Query: 124 WILNDIVWRKSNPMP---NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA------ 174
             L +I+W K    P      G     A+ TL         KGY   + + +        
Sbjct: 120 HALPEILWLKETNKPDKFMGSGMLPVGAYVTLEHEYILILRKGYKREFKSAEEKLNRQNS 179

Query: 175 NEDVQMRSDWLIPICS---GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
               + R+ W     +   G  +  N    +      P  L  R++   +  GD ILDPF
Sbjct: 180 AFFWEERNTWFSDKWNDLNGVFQRLNHIKVRERSGAYPIELAYRLINMFSVQGDTILDPF 239

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
            G+GT+   A    R+ IG E+  ++ DI  +RI +++   NI +     +  E
Sbjct: 240 LGTGTTTLGAIASARNSIGYEIDGNFKDIVEERIKNIKDTSNIYIDERLSRHIE 293


>gi|109946808|ref|YP_664036.1| modification methylase mjai [Helicobacter acinonychis str. Sheeba]
 gi|109714029|emb|CAJ99037.1| modification methylase mjai [Helicobacter acinonychis str. Sheeba]
          Length = 290

 Score =  125 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 118/292 (40%), Gaps = 47/292 (16%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +K+   +S + + ++   SVDLI   PPY N++   +    D        +       +E
Sbjct: 4   NKVFYHSSTN-MNEVLDNSVDLIITSPPYFNIKDYTKNGTQDLQHSTQHVEDLGALEKYE 62

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVI-----------GSYHNIFRIGT-------MLQNL 121
            Y          C RVLKPNG L +             +++N             +L++L
Sbjct: 63  DYLLGLLKVWHECYRVLKPNGKLCINVPLIPMLKKVLNTHYNRHIFDLHADIQHSILRDL 122

Query: 122 NF--------WILNDIVWRKSNP--------MPNFRGRRFQNAHETLIWASPSPKAKGYT 165
           N         ++L+  +W+++NP         P  R    QN  E +       K K  T
Sbjct: 123 NNMLENKPKIFLLDVYIWKRTNPTKKLMFGSYPYPRNFYAQNTIEFIGVFVKDGKPKQPT 182

Query: 166 FNYDALKAANEDVQMRSD------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVS 219
                 K  ++  Q          W IPI + ++    K     H    P  L  R++  
Sbjct: 183 KEQREQKEQSQLTQEEWVEFTKQIWEIPIPNKNDIAFGK-----HAALMPAELARRLIRL 237

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
            +  GD++LDPF GSGT+   AK L+R+FIG E+ ++Y  +  +++ ++   
Sbjct: 238 YSCVGDVVLDPFSGSGTTLREAKLLKRNFIGYELYENYKPLIEQKLGNLFDF 289


>gi|15790524|ref|NP_280348.1| CTAG modification methylase [Halobacterium sp. NRC-1]
 gi|169236262|ref|YP_001689462.1| site-specific DNA-methyltransferase [Halobacterium salinarum R1]
 gi|10581030|gb|AAG19828.1| CTAG modification methylase [Halobacterium sp. NRC-1]
 gi|167727328|emb|CAP14114.1| site-specific DNA-methyltransferase [Halobacterium salinarum R1]
          Length = 348

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 59/281 (20%), Positives = 111/281 (39%), Gaps = 26/281 (9%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDKF 75
            E   ++  G++  +   L A +VDL+   PPY  +++   ++      + A  D+    
Sbjct: 2   DETTHRVAVGDARDL--PLAADAVDLVVTSPPYPMIEMWDAVFTDLDPEIGAALDAGAGE 59

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNG-----------TLWVIGSYHNIFRIGTMLQNLNFW 124
            + +   A         +RVL+P G           ++     Y N  R+     +L F 
Sbjct: 60  RAHDRMHAVLADAWREVKRVLRPGGIAVVNVGDATRSVDRFRVYDNHARVTNAFADLGFD 119

Query: 125 ILNDIVWR-KSNPMPNFRGRRFQN-------AHETLIWASPSPKAKGYTFNYDALKAANE 176
            L  ++WR  +N    F G             HE L+    + + +G+    D    A  
Sbjct: 120 PLPGVLWRKPTNSAAKFMGSGMVPPNAYVTLEHEHLL-VFRNGERRGFEPGADRRYEAAY 178

Query: 177 DVQMRSDWLIPIC---SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
             + R+DW   +    +G+ +   + G +      P AL  R++   +  GD +LDPF+G
Sbjct: 179 FWEERNDWFSDVWTDLNGARQDLAEPGLRERSAAFPFALPYRLINMYSVYGDTVLDPFWG 238

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
           +GT+   A    R+ +G++   + +     RI +   L   
Sbjct: 239 TGTTSVAAAVAGRNSVGVDADPEVVAAFADRITATPELSRA 279


>gi|283786302|ref|YP_003366167.1| prophage DNA methylase [Citrobacter rodentium ICC168]
 gi|282949756|emb|CBG89375.1| putative prophage DNA methylase [Citrobacter rodentium ICC168]
          Length = 243

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/262 (20%), Positives = 94/262 (35%), Gaps = 40/262 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            +   +   V   + + SVD++ AD PY                      WD     E  
Sbjct: 4   TLHNADCFDVFPTIASGSVDMVCADIPYGT----------------TQCCWDSVLDLE-- 45

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                       R+ KP+  + +  +    F    +  NL  W  ++ +W K N      
Sbjct: 46  -----VMWHELYRIAKPSAAIVLFSA--QPFTAVLVGSNLADW-RSEWIWEKGNATGFLN 97

Query: 142 GRRFQ-NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER------ 194
            ++    AHE +             F +   +  ++   + S+      + ++       
Sbjct: 98  AKKQPLRAHENIEVFYRRQPTYNPQFTHGHARRTSKRKTVNSECYGKALTLTKYDSTSRY 157

Query: 195 -------LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                    +K     HPTQKP AL+  ++ + + PGD +LD   GSGT+G    ++ R 
Sbjct: 158 PRDVQFFSSDKQTGNFHPTQKPLALVQYLIETYSNPGDTVLDFTMGSGTAGVACLRVGRC 217

Query: 248 FIGIEMKQDYIDIATKRIASVQ 269
           FIGIE       +A  RI + Q
Sbjct: 218 FIGIEKDTSIFQVARHRIGTKQ 239


>gi|86139841|ref|ZP_01058407.1| DNA methylase N-4/N-6 [Roseobacter sp. MED193]
 gi|85823470|gb|EAQ43679.1| DNA methylase N-4/N-6 [Roseobacter sp. MED193]
          Length = 420

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 99/248 (39%), Gaps = 34/248 (13%)

Query: 21  DKIIKGNSI--SVLEKLPAKSVD--LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            +++ G+S    V+ +L   SV   L+  DPPY ++ +        +   A         
Sbjct: 175 HRLVCGDSTSADVVGRLL-GSVKPLLMVTDPPYGVEYD----PSWRNQAGAAKTKRTGKV 229

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             +    +  AW       L P    ++     +   +   L    F I + I+W K   
Sbjct: 230 LNDDRADWREAW------SLFPGDVAYIWHGALHAATVADSLTAAGFAIRSQIIWAKDRL 283

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           + +     +Q  HE   +A  +     +            D +  + W I         +
Sbjct: 284 VLSRGDYHWQ--HEPCWYAVRAKGKGHW----------AGDRKQTTLWQIA-------NK 324

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           ++D E +H TQKP   + R +++++ PG  + +PF GSGT+   A+   R   G+E+   
Sbjct: 325 DQDAETVHGTQKPVDCMRRPILNNSNPGQAVYEPFMGSGTTLIAAETTGRICYGVELNPA 384

Query: 257 YIDIATKR 264
           Y+D+A +R
Sbjct: 385 YVDVAIER 392


>gi|189466780|ref|ZP_03015565.1| hypothetical protein BACINT_03156 [Bacteroides intestinalis DSM
           17393]
 gi|189435044|gb|EDV04029.1| hypothetical protein BACINT_03156 [Bacteroides intestinalis DSM
           17393]
          Length = 631

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 60/304 (19%), Positives = 111/304 (36%), Gaps = 56/304 (18%)

Query: 21  DKIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLY---RPDHSLVDAV------- 68
           + II+G  +S    L  K  SVDL++ DPP+    +       R +  + +A+       
Sbjct: 63  NLIIRGECVSACAYLKDKGISVDLVYIDPPFASGADYAKKVYIRRNPKVAEAMRQAETEL 122

Query: 69  -------------TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
                         D WDK    E Y  +    L+A + V+    +++V   +H    + 
Sbjct: 123 DVEELKAFEEKMYGDIWDK----ERYLNWMYENLMAIKSVMSDTASIYVHLDWHIGHYVK 178

Query: 116 TMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
            ++  +      +N+IVW  + P      + F   H+T+ W     +   +      +  
Sbjct: 179 VLMDEVFGEDNFVNEIVWCYNGPGSPGM-QHFNKKHDTIFWYCKDKQDYIFNDKDIRMTH 237

Query: 174 -----------------------ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
                                   NE  ++  DW       S    +      + T+KP 
Sbjct: 238 NAKTIDNFKKGLVGSGFISDTYDLNEKGKIPEDWW-KYAVASRYPVDGIKRVEYATEKPY 296

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
            L+ RI+++S+   DI+ D F GSG     +    R FI  ++  + I     R+ + + 
Sbjct: 297 PLIERIVLASSNSNDIVADFFGGSGVLSTASHLNNRRFIHCDIGINSIQTVRDRLIAAKA 356

Query: 271 LGNI 274
             +I
Sbjct: 357 EFDI 360


>gi|13786045|gb|AAK39545.1|AF355462_1 MlyIM [Micrococcus lylae]
          Length = 266

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 114/245 (46%), Gaps = 30/245 (12%)

Query: 27  NSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           + IS L+ LP  SVD++  DP Y   N +L     R      D  T+    F+ F+  + 
Sbjct: 33  DVISFLKSLPDNSVDVLITDPAYSGMNNKLKLGKGRIVGKYADKGTEQAKWFNEFDDTEE 92

Query: 84  FTRAWLLACRRVL-KPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
               +L  C+RVL K  G ++++    ++  +G +++   F + N  VW K N      G
Sbjct: 93  NYHQFLSECKRVLNKQTGHIYLMFDSFSLLTLGALVRE-YFDVKNLXVWDKVNIG---MG 148

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
             F+  HE +++A+          N +  K ++  +    D         +R+ N     
Sbjct: 149 HYFRRRHELILFAT----------NGNTRKVSSRSLHDIWD--------VKRIHNSK--- 187

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            +PTQKP  +  R+L +S+ PG  + DPF GSG++   A K   +F+G ++ +   ++ +
Sbjct: 188 -YPTQKPVEVFERMLEASSIPGFTVCDPFLGSGSAALAAIKYDCNFVGCDISEQSFELCS 246

Query: 263 KRIAS 267
           +RI  
Sbjct: 247 ERIQQ 251


>gi|134095382|ref|YP_001100457.1| putative site-specific DNA-methyltransferase (adenine-specific)
           [Herminiimonas arsenicoxydans]
 gi|133739285|emb|CAL62334.1| Putative site-specific DNA-methyltransferase (adenine-specific)
           [Herminiimonas arsenicoxydans]
          Length = 674

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 64/290 (22%), Positives = 109/290 (37%), Gaps = 39/290 (13%)

Query: 103 WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ-NAHETLIWASPSPKA 161
           +        F  G +L++        +V+      P   G R +  + E +  A     +
Sbjct: 241 YHRTDEKGRFYDGPILRSDGMGARPYLVYEYKGFTPGPSGWRMKKTSLEVIDQAGDLGWS 300

Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
            G           ++   + S W       S      +    +PTQKP  LL RI+ ++T
Sbjct: 301 TGGKPFRKLRPEKDKGRPIGSFWN----DISLINSQAEERIGYPTQKPIKLLERIITATT 356

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV-----QPLGNIE- 275
            PGD++ D F GSGT+   A KL R FIG ++    I I+ KR+ ++     Q L   E 
Sbjct: 357 DPGDLVFDGFVGSGTTLVAAAKLGRRFIGSDINLAAIQISAKRLQTLLDQLGQQLDLDES 416

Query: 276 -------------LTVLTGKRTEPRVAFN------LLVERGLIQPGQILT---NAQGNIS 313
                          V   KR   R  F         + R  +Q  ++L      Q    
Sbjct: 417 IEEFVDDDEDDEARVVSNLKRATQRCGFEVYNVNHYDIFRNPVQAKELLIEVLEVQKLEF 476

Query: 314 ATVC---ADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
           +TV     DG +I   ++  ++R+  +   +E   G+++  +E+      
Sbjct: 477 STVFDGEKDGRMI---KIMPVNRIATRADLNELIAGFDYKAWERKQNEAP 523



 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 13/159 (8%)

Query: 19  WKDKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLNGQLY-RPDHSLVDAVTD---- 70
           W++K+  G+++ V+  L  K    V LI+ DPP++ + + +   R   +  ++  +    
Sbjct: 66  WRNKLFWGDNLQVMSHLIKKFRGQVKLIYIDPPFDSKADYKKSVRLRGTAAESDQNCFEE 125

Query: 71  -SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILN 127
             +    S + Y  F    L+  R +L   G+++V   +H    I  ML  +       N
Sbjct: 126 KQYTDIWSNDEYLQFIYERLILLRELLSETGSIFVHCDWHKSHYIRLMLDEIFGSENFRN 185

Query: 128 DIVW-RKSNP-MPNFRGRRFQNAHETLIWASPSPKAKGY 164
           +IVW R +NP       R F    +T+ + + SP+++ Y
Sbjct: 186 EIVWVRSTNPKGSQHESRSFSPFTDTIFYYAKSPQSRLY 224


>gi|268318070|ref|YP_003291789.1| DNA methylase N-4/N-6 domain-containing protein [Rhodothermus
           marinus DSM 4252]
 gi|262335604|gb|ACY49401.1| DNA methylase N-4/N-6 domain protein [Rhodothermus marinus DSM
           4252]
          Length = 396

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 62/329 (18%), Positives = 104/329 (31%), Gaps = 39/329 (11%)

Query: 36  PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRV 95
             KS+DLI   PPY            H     V        S   Y          C RV
Sbjct: 5   EDKSIDLIVTSPPY-----------WHIKDYGVPGQIGYGQSLHEYLKDLYRVWKECYRV 53

Query: 96  LKPNGTLWVIGSYHN--------------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           LKP   L V                            + + F  +  I+W+K   M    
Sbjct: 54  LKPGRRLCVNIGDQFARSIIYGRYKIIPLHAEFIAQCEEIGFDYMGAIIWQKKTTMNTTG 113

Query: 142 GRRFQNAHET-------LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           G     ++         + +       K    +  A     +    + +W          
Sbjct: 114 GANVMGSYPYPPNGMIEIDYEFILIFKKPGKSDKVAQTLKEKSKLSKEEWKEYFLGHWYF 173

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
              +  E  H    P+ L  R++   +   D +LDPF GSGT+  VA  L R+ +G E+ 
Sbjct: 174 GGARQIE--HEAMFPDELPKRLIKMFSFVDDTVLDPFLGSGTTVKVALNLGRNAVGYEIN 231

Query: 255 QDYIDIATKRI---ASVQPLGNIELTVLTGKRTEPRVAFNLLVE--RGLIQPGQILTNAQ 309
             ++ I  ++I    S     N+++     +    +V +   ++  +  I P +      
Sbjct: 232 DKFVSIMKEKIGLGKSSLQFDNVQIVKREIEEKFEKVNYFPRIKDAKPQIDPKKFNFKND 291

Query: 310 GNISATVCADGTLISGTELGSIHRVGAKV 338
                T   D   I      ++  +GAK+
Sbjct: 292 RLYKVTGIIDEKTIQVDTGLNVKFLGAKI 320


>gi|295100461|emb|CBK98006.1| DNA modification methylase [Faecalibacterium prausnitzii L2-6]
          Length = 263

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 59/273 (21%), Positives = 91/273 (33%), Gaps = 39/273 (14%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           + +  S+ +  + +   + I+ L  LP  SVD++  DPPY    N               
Sbjct: 7   DTSGQSVQKSPEGLFLQDGIAGLRSLPRHSVDMLLTDPPYGTTRN--------------- 51

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
             WD                 A +  +KP G +              +  +    +  + 
Sbjct: 52  -FWDVPLP-------LPELWEAVKWAVKPEGAVLFFA---QCPYDKVLGASNLPMLRYEW 100

Query: 130 VWRKSNPMPNFRGRRF--QNAHETLIWASPSPKAKGY--TFNYDALKAANEDVQMRSDWL 185
           VW KS        RR   +     L++    P               A N          
Sbjct: 101 VWYKSRCTGFLNARRAPLKKTENILVFYQKLPLYNPQFEQGKPYKKIAGNRGDSTNYGKF 160

Query: 186 IPICSGSERLRNKDGE---------KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
           I   SGSE      G           +HPTQKP  L    + + T+PG+++ D   GSGT
Sbjct: 161 IRSGSGSEDGLRFPGNVLAFPTVQRTIHPTQKPVELCEYFIKTYTRPGEVVADICAGSGT 220

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           +   A    R FI  E    Y   A++RI + +
Sbjct: 221 TAVAALNTGRRFICFETVPAYYAAASERIRAAR 253


>gi|218296686|ref|ZP_03497404.1| DNA methylase N-4/N-6 domain protein [Thermus aquaticus Y51MC23]
 gi|218242999|gb|EED09532.1| DNA methylase N-4/N-6 domain protein [Thermus aquaticus Y51MC23]
          Length = 237

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 99/247 (40%), Gaps = 34/247 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++  G ++ VL  L   +V+ +  DPPY     G   RP+          + +    E +
Sbjct: 12  RLHHGEALEVLASLKTGAVEAVLTDPPYGT---GHWRRPESGQGADPRAVYGR----EPW 64

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D+++ AWL    RV +     ++        R+   L       L   +     P P  R
Sbjct: 65  DSWSLAWLPEALRVARGPVLFFLPQD-----RLEEALAFARERGLPFRLLIWGKPDPRPR 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            +    A E ++     P      F                       + S R       
Sbjct: 120 PQGPAYAFEPVLALRGLPGRGKDLF----------------------LATSPRPGRDGEA 157

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HP QKP ++++ ++  +++PGD +LDPF GSG++G  A  L R F+G+E +  ++ +A
Sbjct: 158 TGHPHQKPVSVMAWLVELASRPGDTLLDPFMGSGSTGVAAVGLGRGFLGVEREASWLQVA 217

Query: 262 TKRIASV 268
            +R+ S 
Sbjct: 218 ERRLRSA 224


>gi|294340230|emb|CAZ88602.1| Phage related DNA methyltransferase (cytosine-N(4)-specific)
           [Thiomonas sp. 3As]
          Length = 454

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 52/301 (17%), Positives = 91/301 (30%), Gaps = 55/301 (18%)

Query: 20  KDKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + ++I G+S     V   +  +   L F  PPY  Q +                      
Sbjct: 161 RHRLICGDSTDASVVAALMEGERAQLCFTSPPYGNQRDYTSG------------------ 202

Query: 77  SFEAYDAFTRAWLLAC-----RRVLKPNGTLWV---IGSYHNIFRIGTMLQNLNFWILND 128
               +DA  R            +VL   G +        Y N +     ++   +     
Sbjct: 203 GIADWDALMRGVFANLPTTADAQVLVNLGLIHRDNEFIPYWNAWV--EWMRTTGWRRFAW 260

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWA------------SPSPKAKGYTFNYDALKAANE 176
            VW +   MP     RF  + E +                     + +     +  A   
Sbjct: 261 YVWDQGPGMPGDWSGRFAPSFEFVFHFNRESRKPNKIVPCKFAGQETHLRADGSSTAMRG 320

Query: 177 DVQMRSDWL--------IPICSGSERLRNKDGEKL----HPTQKPEALLSRILVSSTKPG 224
                  W           I     R+    G+      HP   P  L   ++ + T   
Sbjct: 321 KDGEVGGWTAAGQPTQDFRIPDSVIRVMRHKGKIGQDIDHPAVFPVVLPEFVIEAFTDQA 380

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
           DI+ +PF GSG++   A++  R+   +E+  +Y+D+A +R     P   + L        
Sbjct: 381 DIVFEPFGGSGSTMLAAERTGRTCRAVEIAPEYVDVAIRRFLQNHPQEEVTLVATGQSFA 440

Query: 285 E 285
           E
Sbjct: 441 E 441


>gi|124005746|ref|ZP_01690585.1| chromosome partitioning protein [Microscilla marina ATCC 23134]
 gi|123988814|gb|EAY28420.1| chromosome partitioning protein [Microscilla marina ATCC 23134]
          Length = 494

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 91/256 (35%), Gaps = 22/256 (8%)

Query: 20  KDKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQLN--GQLYRPDHSLVDAVTDSWDK 74
           K ++I G+S+  +  E L   S   ++  DPPYN+  +  G L +  H          D 
Sbjct: 220 KHRLICGDSLLAATFETLMNGSLARILITDPPYNIPYSLFGGLGKVQHEDFSMAAGEMDD 279

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
               + +  F   ++    +        +    + + + +      +        V   +
Sbjct: 280 ----QEFVEFLATYMRHAVQHTVDGSIHFHFMDFRHAWHMCEAGGKVYGSREPKQVCVWN 335

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
             +    G  ++  HE                         +D    + W     +    
Sbjct: 336 KSI-QANGSFYRAKHEFCFIFKSGEAK-------HLSHLELKDRFRSNVWDYKSANDFSN 387

Query: 195 LRNKDGEKL-----HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
              K+  KL     HPT KP  +++  L+ +T  GDI+LD F GSGT+   A++ RR   
Sbjct: 388 EERKEFGKLGALENHPTPKPVRMIADALLDTTNEGDIVLDCFLGSGTTLMAAERTRRICY 447

Query: 250 GIEMKQDYIDIATKRI 265
           G+E +  Y+     R 
Sbjct: 448 GVEYEPGYMQGILTRF 463


>gi|38638617|ref|NP_944318.1| gp10 [Burkholderia phage Bcep1]
 gi|34485999|gb|AAQ73356.1| gp10 [Burkholderia phage Bcep1]
          Length = 233

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 63/264 (23%), Positives = 104/264 (39%), Gaps = 48/264 (18%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           + G+ +  + +LPA+SVDL+  D PY    N                 WD          
Sbjct: 1   MFGDCLLAMHELPAQSVDLVLCDLPYGTTRN----------------RWDTP------LD 38

Query: 84  FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
            +R W +A R V KP   + +         +G    +    +  + +W K+N       +
Sbjct: 39  LSRLW-VAYRHVCKPGAPVLLFAQTPFDKVLGA---SNLPELRYEWIWEKTNATGFLNAK 94

Query: 144 RFQ-NAHETLI----------------WASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           R    AHE ++                    +    GY+ NY A   ++ D   R    +
Sbjct: 95  RAPLKAHENILVFCDRAPTYRPIKTSGHVRKTSTRLGYSSNYGAQAVSSYDSTERYPRSV 154

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
              +      +K   KLHPTQKP ALL  ++ +   PG ++LD   G  ++   A +   
Sbjct: 155 LRFAS-----DKQRSKLHPTQKPVALLEYLIRTHAAPGAVVLDNCMGCASTALAAMQAGC 209

Query: 247 SFIGIEMKQDYIDIATKRIASVQP 270
           +FIGIE   ++ + A +R+   QP
Sbjct: 210 AFIGIENDVEHFETAQRRVRDYQP 233


>gi|323358512|ref|YP_004224908.1| adenine specific DNA methylase Mod [Microbacterium testaceum
           StLB037]
 gi|323274883|dbj|BAJ75028.1| adenine specific DNA methylase Mod [Microbacterium testaceum
           StLB037]
          Length = 324

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/218 (24%), Positives = 94/218 (43%), Gaps = 12/218 (5%)

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
            +  +++ +     ++D    F+ Y  F    L+   R+L  +GTL++   Y  +     
Sbjct: 107 FHGREYARLRGDLRTYDDR--FDDYWGFLEPRLIEAWRLLADDGTLYLHLDYREVHYAKV 164

Query: 117 MLQNL--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN------Y 168
           M   L      LN+++W           RR+   HET++    +P    +  +      Y
Sbjct: 165 MCDALFGRDKFLNELIWAYDYGAKT--KRRWPTKHETILVYVKNPATYFFDSDAVDREPY 222

Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
            A      +   R      +   +        +  +PTQKPE +L R++ +S++PGD +L
Sbjct: 223 MAPGLVTAEKAARGKMPTDVWWHTIVPTTGREKTGYPTQKPEGVLRRMVQASSRPGDRVL 282

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           D F GSGT GAVA  L R  + I+   D + +  KR+ 
Sbjct: 283 DMFAGSGTLGAVAAPLGRDSVLIDDNADAVAVMRKRLE 320


>gi|116622013|ref|YP_824169.1| DNA methylase N-4/N-6 domain-containing protein [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116225175|gb|ABJ83884.1| DNA methylase N-4/N-6 domain protein [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 296

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 60/271 (22%), Positives = 90/271 (33%), Gaps = 59/271 (21%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D++ + + +  L  LP ++VD+   DPPY  +LN                          
Sbjct: 5   DQVTQMDCLKALADLPDQAVDVTLTDPPYPNRLN-------------------------- 38

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                                  +          G  L            W   N     
Sbjct: 39  -----------------------LFSDSIVDGYAGLYLACKKTKNYVVFFWSNDNIPQAP 75

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G      H   +W  P        +    + + +   +    W IPI       R+   
Sbjct: 76  PGWYEVARH---VWHKP-DCKSITHYELIIVWSRDYKRKTSRVWSIPILD----YRSLRD 127

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K HPTQKP  L+  +L   TK GD +LDPF G+GT+    K++RR FI I+    YI +
Sbjct: 128 WKPHPTQKPVRLIRYLLEQYTKEGDTVLDPFVGTGTTAVACKQMRRHFIAIDNDPAYIKM 187

Query: 261 ATKRI--ASVQPLGNIELTVLTGKRTEPRVA 289
           AT R+   S Q     +   + G+   P   
Sbjct: 188 ATARLTTRSKQDDAAPQEATVKGEDAPPEDP 218


>gi|283955714|ref|ZP_06373205.1| hypothetical protein C1336_000060025 [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283792669|gb|EFC31447.1| hypothetical protein C1336_000060025 [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 771

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 59/302 (19%), Positives = 113/302 (37%), Gaps = 49/302 (16%)

Query: 1   MSQKNSLAINENQNSIFEWKD-KIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQ 56
           +S++N   + ++ +++ E  + +++K ++   L  L  K    +DLI+ DPP+N      
Sbjct: 355 LSEENYYKLLQSFDNLDEILNGELVKADNFQALNSLMPKYQGKIDLIYIDPPFNTG---- 410

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
                     +  D  DKF     + +     L   +  L   G+ ++   Y+  +R   
Sbjct: 411 ----------SDFDYKDKFQD-STWLSLMHNRLELAKEFLSDKGSFYLHLDYNANYRGRE 459

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS-------------------- 156
           +L ++            +         +F   H+T+++                      
Sbjct: 460 LLNDIFGEENFVNEIVWNYKGTTNTNVKFAPKHDTILYYKTKSHIFNFDDVRIPYEDDDK 519

Query: 157 --------PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL--HPT 206
                        K     Y   K  N    +       + +    +    G++     T
Sbjct: 520 FSIDENGKYYMMWKKDQRYYPPQKFVNNTWILLGKSQYDVWNDIPSMATAHGKEFLNFQT 579

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           QK E LL RI+ +S+    I+LD F GSGT+ A A KL R ++G+EM + +  +   R+ 
Sbjct: 580 QKQEKLLQRIIKASSNENSIVLDFFTGSGTTIATAHKLERKWLGVEMGEHFYKVIIPRMK 639

Query: 267 SV 268
            V
Sbjct: 640 KV 641


>gi|225375476|ref|ZP_03752697.1| hypothetical protein ROSEINA2194_01101 [Roseburia inulinivorans DSM
           16841]
 gi|257439458|ref|ZP_05615213.1| DNA (cytosine-5-)-methyltransferase [Faecalibacterium prausnitzii
           A2-165]
 gi|225212673|gb|EEG95027.1| hypothetical protein ROSEINA2194_01101 [Roseburia inulinivorans DSM
           16841]
 gi|257198117|gb|EEU96401.1| DNA (cytosine-5-)-methyltransferase [Faecalibacterium prausnitzii
           A2-165]
          Length = 264

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 86/257 (33%), Gaps = 39/257 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +   + I  L  LP  SVD++  DPPY    N                 WD         
Sbjct: 21  LFLMDGIEGLRSLPKHSVDMLLTDPPYGTTRN----------------FWDVPLP----- 59

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
                   A +  +KP+G +              +  +    +  + VW KS        
Sbjct: 60  --LPELWEAVKWAVKPDGAVLFFA---QCPYDKVLGASNLSMLRYEWVWYKSRCTGFLNA 114

Query: 143 RRF--QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW--LIPICSGSERLRNK 198
           RR   +     L++    P            K  +       ++   +   SGSE     
Sbjct: 115 RRAPLKRTENILVFYQKLPYYDPQFEQGKPYKKISRTGDNSPNYGKFLRSSSGSEDGLRF 174

Query: 199 DGE---------KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
            G           +HPTQKP  L   ++ + T+PG+++ D   GSGT+   A    R F+
Sbjct: 175 PGNLLAFSSVQRTVHPTQKPVELCEYLIRTYTRPGEVVADICAGSGTTAVAAVNTGRRFV 234

Query: 250 GIEMKQDYIDIATKRIA 266
             E    +   AT+RI 
Sbjct: 235 CFETAPAFYAPATERIR 251


>gi|295086226|emb|CBK67749.1| DNA modification methylase [Bacteroides xylanisolvens XB1A]
          Length = 282

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 57/256 (22%), Positives = 101/256 (39%), Gaps = 24/256 (9%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           II  N+   + +L   S+D+I   PPY  +++   ++   +  +          ++FE  
Sbjct: 4   IIYFNTAQKMSQLSDNSIDMIVTSPPYPMIEMWDDIFAAQNPDIRTAFKQNKPRTAFELM 63

Query: 82  DAFTRAWLLACRRVLKPNGTLW------------VIGSYHNIFRIGTMLQNLNFWILNDI 129
                     C RVLK    +                 Y+N  RI    + L F  L +I
Sbjct: 64  HKELDKVWSECWRVLKDGSFMCINIGDATRTINSEFALYNNNTRIILACEKLGFINLPNI 123

Query: 130 VWRKSNPMPN--------FRGRRFQNAHETL-IWASPSPKAKGYTFNYDALKAANEDVQM 180
           +W+K+   PN          G      HE + I+     +    T + DA ++++   + 
Sbjct: 124 LWKKTTNAPNKFMGSGMLPCGAYVTLEHEWILIFRKGGKRVYKTTEDKDARRSSSFFWEE 183

Query: 181 RSDWLIPIC--SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
           R+ W   I    G ++  +K   +      P  L  R++   ++ GD +LDPF G GT+ 
Sbjct: 184 RNIWFSDIWDIKGVKQTIDKAPSRERNASYPIELPYRLINMYSQKGDTVLDPFMGLGTTV 243

Query: 239 AVAKKLRRSFIGIEMK 254
             +    R+ IG E+ 
Sbjct: 244 IASILSERNSIGYEID 259


>gi|218295065|ref|ZP_03495901.1| DNA methylase N-4/N-6 domain protein [Thermus aquaticus Y51MC23]
 gi|218244268|gb|EED10793.1| DNA methylase N-4/N-6 domain protein [Thermus aquaticus Y51MC23]
          Length = 237

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 99/247 (40%), Gaps = 34/247 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++  G ++ VL  L   +V+ +  DPPY     G   RP+          + +    E +
Sbjct: 12  RLHHGEALEVLASLKTGAVEAVLTDPPYGT---GHWRRPESGQGADPRAVYGR----EPW 64

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D+++ AWL    RV +     ++        R+   L       L   +     P P  R
Sbjct: 65  DSWSLAWLPEALRVARGPVLFFLPQD-----RLEEALAFARERGLPFRLLIWGKPDPRPR 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            +    A E ++     P      F                       + S R       
Sbjct: 120 PQGPAYAFEPVLALRSLPGRGKDLF----------------------LATSPRPGRDGEA 157

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HP QKP ++++ ++  +++PGD +LDPF GSG++G  A  L R F+G+E +  ++ +A
Sbjct: 158 TGHPHQKPVSVMAWLVELASRPGDTLLDPFMGSGSTGVAAVGLGRGFLGVEREASWLQVA 217

Query: 262 TKRIASV 268
            +R+ S 
Sbjct: 218 ERRLRSA 224


>gi|117924549|ref|YP_865166.1| nuclease [Magnetococcus sp. MC-1]
 gi|117608305|gb|ABK43760.1| ParB domain protein nuclease [Magnetococcus sp. MC-1]
          Length = 444

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/289 (21%), Positives = 110/289 (38%), Gaps = 37/289 (12%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNG------QLYRPDHSLVDAVTDS 71
            +++ G+S+    V+  +  +   L   DPPY +  +G      +  R   SL    +DS
Sbjct: 176 HRLLCGSSLNPDDVIRLMNGERAILFATDPPYLVDYDGTNHPGSKETRKRESLNKDWSDS 235

Query: 72  ----WDKFS-SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
               WD  S   E Y+ F R    A    ++PN   +   +      +  + + +  +  
Sbjct: 236 YGVTWDDSSQGPELYEGFIR---TAIDHAIEPNAAWYCWHASKRQAMLEAVWEKMGAFQH 292

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
             I+W K   +       +++    + W   +   K           A+    + + W I
Sbjct: 293 QQIIWNKEKGVLTRSKYLWKHEPCLMGWIKGNMPPK-----------ADGAEFLSTVWDI 341

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
              SG ER         HPT KP    +  +    + G +  +PF GSG+     +   R
Sbjct: 342 QGLSGDERPD-------HPTPKPLDCFAIPMRQHVERGGLCYEPFSGSGSQIMAGEMTGR 394

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
               +E+   Y+D+A KR   +Q  G I     +G ++   VA +  +E
Sbjct: 395 RVHAMEISPIYVDVAVKRF--IQATGKIVYLDGSGGKSFEDVAADRGIE 441


>gi|192289131|ref|YP_001989736.1| DNA methylase N-4/N-6 domain protein [Rhodopseudomonas palustris
           TIE-1]
 gi|192282880|gb|ACE99260.1| DNA methylase N-4/N-6 domain protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 238

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 93/255 (36%), Gaps = 40/255 (15%)

Query: 22  KIIKGNSISVLEKLPAKSV-DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE- 79
            +  G+++ ++  L    V D +  DPPY+    G +     S  +       K+  F+ 
Sbjct: 12  TVYLGDALEIMPTLGP--VGD-VLTDPPYSSG--GNVRDLAKSTNEKYLTGPAKYPEFQG 66

Query: 80  ------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                 ++ A++  W+   R + +P   L     +  +      +Q   +     + W K
Sbjct: 67  DTRDQRSFLAWSTLWMGRARALTRPGAMLVCFSDWRQLPVTSDAVQCAGWVWRGIVPWDK 126

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
           +      +GR    A E  +W +   +                        + P+  G  
Sbjct: 127 TEGSRPQKGRYRVQA-EYALWGTNGARPP----------------------VGPVAPGVF 163

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           R  +    K H   KP  L+  ++     P   ILDPF GSGT G    +    ++GIE+
Sbjct: 164 R-MSVPRIKHHVAGKPVDLMLGLMGVLDGP---ILDPFMGSGTVGIACLQRGLPYVGIEV 219

Query: 254 KQDYIDIATKRIASV 268
            + Y +IA  R+   
Sbjct: 220 DETYFEIACGRLEEA 234


>gi|260576702|ref|ZP_05844688.1| ParB domain protein nuclease [Rhodobacter sp. SW2]
 gi|259021069|gb|EEW24379.1| ParB domain protein nuclease [Rhodobacter sp. SW2]
          Length = 419

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 96/248 (38%), Gaps = 34/248 (13%)

Query: 21  DKIIKGNSI--SVLEKLPAKSVD--LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            ++I G+S    V+ +L    V   L+  DPPY ++ +        +   A         
Sbjct: 174 HRLICGDSTSADVVGRLLGD-VRPLLMVTDPPYGVEYD----PSWRNQAGAAKTKRTGKV 228

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             +    +  AW       L P    +V     +   +   L    F + + I+W K   
Sbjct: 229 LNDDRADWREAW------ALFPGDVAYVWHGALHAGEVADSLAAAGFAVRSQIIWAKDRL 282

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           + +     +Q  HE   +A        +            D +  + W I         +
Sbjct: 283 VLSRGDYHWQ--HEPCWYAVRVKGKGHW----------AGDRKQTTLWHISG-------K 323

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           ++D   +H TQKP   + R +++++ PG  + +PF GSGT+   A+   R   GIE+   
Sbjct: 324 DQDAATVHGTQKPVECMRRPILNNSSPGQAVFEPFMGSGTTLIAAETTGRVCFGIELNPA 383

Query: 257 YIDIATKR 264
           Y+D+A +R
Sbjct: 384 YVDLAIER 391


>gi|240143545|ref|ZP_04742146.1| prophage LambdaMc01, DNA methyltransferase [Roseburia intestinalis
           L1-82]
 gi|257204476|gb|EEV02761.1| prophage LambdaMc01, DNA methyltransferase [Roseburia intestinalis
           L1-82]
          Length = 480

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/295 (20%), Positives = 108/295 (36%), Gaps = 54/295 (18%)

Query: 20  KDKIIKGNSI------SVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDAVTD 70
           + +++ GNS        +L     +   L+  DPPY     Q +G+      ++    TD
Sbjct: 214 RHRLMCGNSTNAKDREELLAGAEPE---LMLTDPPYCSGGHQESGKSTGSIGTVRKGQTD 270

Query: 71  SW---DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
           +    +   S   Y     A       +       +V   +     +  +++   F + +
Sbjct: 271 APKIANDILSTRGYIKLLTAAFEGITPL-----FAYVFTDWRMWIYLYDIIEKSGFGVRS 325

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWAS----PSPKAKGYTFNYDALKAANEDVQMRSD 183
            IVW K  P     G  +++ HE  ++ S         KGY                   
Sbjct: 326 MIVWDKETPG---MGVGWRSQHELCLFGSRGKAKFDGHKGY------------------- 363

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
                  G+    ++ G +LHPTQKP  L+  IL +       + DPF GSGT+ A A+K
Sbjct: 364 -------GNVLRCSRSGNELHPTQKPVELMEMILDNMDFVK-TVYDPFGGSGTTLAAAEK 415

Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGL 298
              +   +E+   Y D+  KR   +    +    +  G   +P V   +  + G+
Sbjct: 416 TGHTAYLMELTPGYTDVIVKRYFRITGNKDQIQLIRDGAPADPAVYAEIFDDVGI 470


>gi|117926185|ref|YP_866802.1| nuclease [Magnetococcus sp. MC-1]
 gi|117609941|gb|ABK45396.1| ParB domain protein nuclease [Magnetococcus sp. MC-1]
          Length = 444

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 59/289 (20%), Positives = 111/289 (38%), Gaps = 37/289 (12%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNG------QLYRPDHSLVDAVTDS 71
            +++ G+S+    V+  +  +   L   DPPY +  +G      +  R   SL    +DS
Sbjct: 176 HRLLCGSSLNPDDVIRLMNGERAILFATDPPYLVDYDGTNHPGSKETRKRESLNKDWSDS 235

Query: 72  ----WDKFS-SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
               WD  S   E Y+ F RA +      ++PN   +   +      +  + + +  +  
Sbjct: 236 YGVTWDDSSQGPELYEGFIRAAID---HAIEPNAAWYCWHASKRQAMLEAVWEKMGAFQH 292

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
             I+W K   +       +++    + W   +   K           A+    + + W I
Sbjct: 293 QQIIWNKEKGVLTRSKYLWKHEPCLMGWIKGNMPPK-----------ADGAEFLSTVWDI 341

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
              SG ER         HPT KP    +  +    + G +  +PF GSG+     +   R
Sbjct: 342 QGLSGDERPD-------HPTPKPLDCFAIPMRQHVERGGLCYEPFSGSGSQIMAGEMTGR 394

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
               +E+   Y+D+A KR   ++  G +     +G ++   VA +  +E
Sbjct: 395 RVHAMEISPVYVDVAVKRF--IRATGKVVYLDGSGGKSFEDVAADRGIE 441


>gi|289580416|ref|YP_003478882.1| DNA methylase N-4/N-6 domain protein [Natrialba magadii ATCC 43099]
 gi|289529969|gb|ADD04320.1| DNA methylase N-4/N-6 domain protein [Natrialba magadii ATCC 43099]
          Length = 330

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/276 (19%), Positives = 98/276 (35%), Gaps = 47/276 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++ +G++   L  +P +S++L+   PPY           D    +  T   ++    E 
Sbjct: 54  HELHRGDARD-LSMVPEESIELVVTSPPYF----------DIKDYENGTGGENQLGDIEG 102

Query: 81  YDAFTRA---WLLACRRVLKPNGTLWVI-------GSYHNIFRIGTM-------LQNLNF 123
           Y+AF          C   L P G + ++        S +   R+  +         ++ F
Sbjct: 103 YEAFNDEIDRVWEQCYEKLVPGGRMCIVVGDVLRSRSDYGRHRVLPLHATIQERCTDIGF 162

Query: 124 WILNDIVWRKSN-------------PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
             L  I+W K                 P   G   +N  E ++        +  T     
Sbjct: 163 DNLAPIIWYKIGNSSLEAGGNARFLGKPYEPGAVIKNDIEYILLFRKPGDYRSPTVAERV 222

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
           L     D        +            + +  HP   P  L  R++   +   D +LDP
Sbjct: 223 LSLIEADRHQTMFRQL------WTDITGEAQTDHPAPYPATLAERLIRMFSFVTDTVLDP 276

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           F GSG++   A +  R  I +E++++Y +IA +R+ 
Sbjct: 277 FAGSGSTAVGATRCGRDSISVELEEEYFEIAKRRVE 312


>gi|218129458|ref|ZP_03458262.1| hypothetical protein BACEGG_01035 [Bacteroides eggerthii DSM 20697]
 gi|254881376|ref|ZP_05254086.1| gp10 [Bacteroides sp. 4_3_47FAA]
 gi|217988188|gb|EEC54511.1| hypothetical protein BACEGG_01035 [Bacteroides eggerthii DSM 20697]
 gi|254834169|gb|EET14478.1| gp10 [Bacteroides sp. 4_3_47FAA]
          Length = 254

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 89/265 (33%), Gaps = 47/265 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + K + + V+  LP  S+DL+  DPP+ +                    WDK   F   
Sbjct: 11  TLYKADCLEVMPFLPESSIDLVLCDPPFGI----------------TASQWDKIIPFPEM 54

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGS--YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                      RRV K N    + GS  + ++ R G +          D VW KS     
Sbjct: 55  -------WKEIRRVRKENAPTVLFGSEPFSSLLRCGNL-----EEFKYDWVWEKSKASNF 102

Query: 140 FRGRRFQ-NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
              ++    AHE +                                +  + + + R  NK
Sbjct: 103 LLAKKQPLKAHELISVFGKGRTPYYPIMEEGEPYGNRTKRGSNWTGINNVPNPTFRNENK 162

Query: 199 ----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
                           +G+ +H  QKP ALL  ++ + TK GD +LD   GS ++     
Sbjct: 163 GTRYPRSVIYFKTAESEGKTIHVNQKPIALLQYLIRTYTKEGDTVLDFASGSMSTAIACI 222

Query: 243 KLRRSFIGIEMKQDYIDIATKRIAS 267
              R  I IE  + +     KR+ +
Sbjct: 223 YTHRKCICIEKDETHFSQGEKRVRN 247


>gi|150400630|ref|YP_001324396.1| DNA methylase N-4/N-6 domain-containing protein [Methanococcus
           aeolicus Nankai-3]
 gi|150013333|gb|ABR55784.1| DNA methylase N-4/N-6 domain protein [Methanococcus aeolicus
           Nankai-3]
          Length = 446

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 67/278 (24%), Positives = 107/278 (38%), Gaps = 48/278 (17%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF-SS 77
           + + II+ +S +++E +P  SV LI   PPY              L D   +    F  S
Sbjct: 4   FHNVIIR-DSRNMVE-IPDNSVHLIITSPPY------------WQLKDYGVEEQIGFNDS 49

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLW-VIGS------YHNIF-------RIGTMLQNLNF 123
           +E Y          C RVL P   +   IG       Y+  +        I    + + F
Sbjct: 50  YEEYINNLNLVWKECYRVLHPGCRMVINIGDQFARSVYYGRYKVIPIRTEIIKFAETIGF 109

Query: 124 WILNDIVWRKSNPM------------PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
             +  IVW+K+  M            P  R    +  +E ++       A          
Sbjct: 110 DYMGAIVWQKNTTMNTTGGASVMGSYPYPRNGIIKIDYEHILIFKKPGNAPK------PS 163

Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
           K   E  ++  +      SG         +K H    PE L  RI+   +  G+ +LDPF
Sbjct: 164 KEIKEASKLTKEEWKEYFSGHWYFNGVKQDK-HLAMFPEELPKRIIKMFSFVGETVLDPF 222

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            GSGT+   AKKL R+ IG E+ ++++ I   ++ + Q
Sbjct: 223 LGSGTTSLAAKKLDRNSIGYELNKEFLPIILDKLGANQ 260


>gi|169834647|ref|YP_001693301.1| DNA methylase [Clostridium botulinum B1 str. Okra]
 gi|169123195|gb|ACA47030.1| DNA methylase [Clostridium botulinum B1 str. Okra]
          Length = 254

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/262 (21%), Positives = 95/262 (36%), Gaps = 40/262 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I  GN + +++K+  KS+D++ +D P+ +                  + WDK   FE 
Sbjct: 5   NNIYLGNCLEIMKKIDDKSIDMVLSDLPFGM----------------TNNEWDKAIPFE- 47

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGS-------------YHNIFRIGTMLQNLNFWILN 127
                        R+ K N ++ ++ +             Y+    I    +  NF   N
Sbjct: 48  ------PMWQEINRIAKDNASIALMAAGVFTSELVVSNKKYYRYSWIWKPKEKSNFLNAN 101

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF---NYDALKAANEDVQMRSDW 184
            +  R+   +P F         +      P  K K +T    NY   K   E       +
Sbjct: 102 RMPLRQHIDIPIFYKNLPVYNPQKTYGHKPVKKYKQHTTAGANYGKTKIGMEGGGQTDRY 161

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
              I         K  +++HPTQKP  L   ++ + T    I LD   GS          
Sbjct: 162 PTTIIDIPYNTI-KIKDRIHPTQKPIELYEYLIKTYTNEEGIALDFTAGSCVLAEACINT 220

Query: 245 RRSFIGIEMKQDYIDIATKRIA 266
            R++I IE ++ Y + A +RI 
Sbjct: 221 NRNYICIEKEKKYCNKAKERIK 242


>gi|170695981|ref|ZP_02887120.1| ParB domain protein nuclease [Burkholderia graminis C4D1M]
 gi|170139165|gb|EDT07354.1| ParB domain protein nuclease [Burkholderia graminis C4D1M]
          Length = 473

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 57/261 (21%), Positives = 99/261 (37%), Gaps = 34/261 (13%)

Query: 21  DKIIKGNSIS------VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
            +++ G+S         L  +      L+  DPPY +  +   +R    +V+        
Sbjct: 165 HRLVCGDSTDGEVAKAALAGIRPS---LMITDPPYGVDYDAD-WRNRVVMVEGERRGTHG 220

Query: 75  FSSFEAYDAFTRA-WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
             S       TRA W  A +        +W  G + ++  +   L+  NF I + I+W K
Sbjct: 221 TRSTGKVLNDTRADWREAWQHFPGDVAYVWHAGVFADV--VAGSLRACNFGIRSQIIWAK 278

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
              + +     +Q  HE   +A    K  G+T +                      S   
Sbjct: 279 HTLVVSRGHYHWQ--HEPCWYAVREGKTAGWTGDRSQ-------------------STLW 317

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           ++ ++  E  H TQKP   + R + + T PG  + +PF GSGT+   A+ + R    IE+
Sbjct: 318 QIEHRRSESGHSTQKPVEAMRRPIENHTSPGQAVYEPFSGSGTTIVAAESVGRVCHAIEL 377

Query: 254 KQDYIDIATKRIASVQPLGNI 274
              Y D+A  R  +      +
Sbjct: 378 NPAYCDVAVLRWQAATRQQAV 398


>gi|255008159|ref|ZP_05280285.1| putative site-specific DNA-methyltransferase [Bacteroides fragilis
           3_1_12]
 gi|313145876|ref|ZP_07808069.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313134643|gb|EFR52003.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 254

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 89/265 (33%), Gaps = 47/265 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + K + + V+  LP  S+DL+  DPP+ +                    WDK   F   
Sbjct: 11  TLYKADCLEVMPFLPESSIDLVLCDPPFGI----------------TASQWDKIIPFPEM 54

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGS--YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                      RRV K N    + GS  + ++ R G +          D VW KS     
Sbjct: 55  -------WKEIRRVRKENAPTVLFGSEPFSSLLRCGNL-----EEFKYDWVWEKSKASNF 102

Query: 140 FRGRRFQ-NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
              ++    AHE +                                +  + + + R  NK
Sbjct: 103 LLAKKQPLKAHELISVFGKGRIPYYPIMEEGEPYGNRTKRGSNWTGINNVPNPTFRNENK 162

Query: 199 ----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
                           +G+ +H  QKP ALL  ++ + TK GD +LD   GS ++     
Sbjct: 163 GTRYPRSVIYFKTAESEGKTIHVNQKPIALLQYLIRTYTKEGDTVLDFASGSMSTAIACI 222

Query: 243 KLRRSFIGIEMKQDYIDIATKRIAS 267
              R  I IE  + +     KR+ +
Sbjct: 223 YTHRKCICIEKDETHFSQGEKRVRN 247


>gi|117925345|ref|YP_865962.1| nuclease [Magnetococcus sp. MC-1]
 gi|117609101|gb|ABK44556.1| ParB domain protein nuclease [Magnetococcus sp. MC-1]
          Length = 448

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 59/289 (20%), Positives = 109/289 (37%), Gaps = 37/289 (12%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNG------QLYRPDHSLVDAVTDS 71
            +++ G+S+    V+  +  +   L   DPPY +  +G      +  R   SL    +DS
Sbjct: 180 HRLLCGSSLNPDDVIRLMNGERAILFATDPPYLVDYDGTNHPGSKESRKRESLNKDWSDS 239

Query: 72  ----WDKFS-SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
               WD  S   E Y+ F RA +      ++PN   +   +      +  + + +  +  
Sbjct: 240 YGVTWDDSSQGPELYEGFIRAAID---HAIEPNAAWYCWHASKRQAMLEAVWEKMGAFQH 296

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
             I+W K   +       +++    + W   +   K            N    + + W I
Sbjct: 297 QQIIWNKEKGVLTRSKYLWKHEPCLMGWIKGNMPPKI-----------NGAEFLSTVWDI 345

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
              SG ER         HPT KP    +  +    + G +  +PF GSG+     +   R
Sbjct: 346 RGLSGEERPD-------HPTPKPLDCFAIPMRQHVERGGLCYEPFSGSGSQIMAGEMTGR 398

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
               +E+   Y+D+A KR   +Q  G I     +G ++   +A    ++
Sbjct: 399 RVHAMEISPVYVDVAVKRF--IQATGKIVYLDGSGGKSFDEIAAQRGID 445


>gi|169835025|ref|YP_001715839.1| DNA methylase [Clostridium botulinum A3 str. Loch Maree]
 gi|169409132|gb|ACA57542.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 254

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 55/262 (20%), Positives = 95/262 (36%), Gaps = 40/262 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I  GN + +++K+  KS+D++ +D P+ +                  + WDK   FE 
Sbjct: 5   NNIYLGNCLEIMKKIDDKSIDMVLSDLPFGM----------------TNNEWDKAIPFE- 47

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGS-------------YHNIFRIGTMLQNLNFWILN 127
                        R+ K N ++ ++ +             Y+    I    +  NF   N
Sbjct: 48  ------PMWQEINRIAKDNASIALMAAGVFTSELVVSNKKYYRYSWIWKPKEKSNFLNAN 101

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF---NYDALKAANEDVQMRSDW 184
            +  R+   +P F         +      P  K K +T    NY   K   E       +
Sbjct: 102 RMPLRQHIDIPIFYKNLPVYNPQKTYGHKPVKKYKQHTTAGANYGKTKIGMEGGGQTDRY 161

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
              +         K  +++HPTQKP  L   ++ + T    I LD   GS          
Sbjct: 162 PTTVIDIPYNTI-KIKDRIHPTQKPIELYEYLIKTYTNEEGIALDFTAGSCVLAEACINT 220

Query: 245 RRSFIGIEMKQDYIDIATKRIA 266
            R++I IE ++ Y + A +RI 
Sbjct: 221 NRNYICIEKEKKYCNKAKERIK 242


>gi|300710254|ref|YP_003736068.1| modification methylase [Halalkalicoccus jeotgali B3]
 gi|299123937|gb|ADJ14276.1| modification methylase [Halalkalicoccus jeotgali B3]
          Length = 343

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 62/297 (20%), Positives = 114/297 (38%), Gaps = 26/297 (8%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
             +  G++  +   LP +SVDL+   PPY  +++   ++      ++ +  + +   +FE
Sbjct: 5   HALHVGDARDL--ALPDESVDLVVTSPPYPMIEMWDDVFAGLDPGIEEMLAAGEGERAFE 62

Query: 80  AYDAFTRAWLLACRRVLKPNGTLW------------VIGSYHNIFRIGTMLQNLNFWILN 127
           +  A   A      RVL+                     +Y N  RI    ++  F  L 
Sbjct: 63  SMHAILDAVWDELERVLREGAIACINVGDATRTVENTFQTYPNHVRITEAFRDRGFVSLP 122

Query: 128 DIVWR-KSNPMPNFRGRRF--QNAHETLIWASPSPKAKG----YTFNYDALKAANEDVQM 180
            I+WR  +N    F G      NA+ TL         KG    +  + ++   +    + 
Sbjct: 123 GILWRKPTNSTAKFMGSGMVPTNAYPTLEHEHVLIFRKGGPRRFEPHLESRYESAYFWEE 182

Query: 181 RSDWLIPICSGSERLRNK-DGE-KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
           R+ W   + S  + +  + DGE +      P  L  R++   +   D + DPF+G+GT+ 
Sbjct: 183 RNRWFSDLWSDIKGVDQRLDGEARERSGAFPFELPYRLINMFSIHEDTVCDPFWGTGTTT 242

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN--IELTVLTGKRTEPRVAFNLL 293
             A    R  +G E+    ++    R+A +       IE  +   +    RV    L
Sbjct: 243 LAAMVAGRESVGHELDPGLVEAFDGRLADLPAFSREVIENRLADHRAFVERVGAEEL 299


>gi|260577042|ref|ZP_05845021.1| ParB domain protein nuclease [Rhodobacter sp. SW2]
 gi|259020712|gb|EEW24029.1| ParB domain protein nuclease [Rhodobacter sp. SW2]
          Length = 419

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 96/248 (38%), Gaps = 34/248 (13%)

Query: 21  DKIIKGNSI--SVLEKLPAKSVD--LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            ++I G+S    V+ +L    V   L+  DPPY ++ +        +   A         
Sbjct: 174 HRLICGDSTSADVVGRLLGD-VRPLLMVTDPPYGVEYD----PSWRNQAGAAKTKRTGKV 228

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             +    +  AW       L P    +V     +   +   L    F + + I+W K   
Sbjct: 229 LNDDRADWREAW------ALFPGDVAYVWHGALHSSTVAESLVAAGFAVRSQIIWAKDRL 282

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           + +     +Q  HE   +A        +            D +  + W I         +
Sbjct: 283 VLSRGDYHWQ--HEPCWYAVKKTGKGHW----------AGDRKQTTLWHISG-------K 323

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           ++D   +H TQKP   + R +++++ PG  + +PF GSGT+   A+   R   GIE+   
Sbjct: 324 DQDAATVHGTQKPVECMRRPILNNSSPGQAVFEPFMGSGTTLIAAETTGRVCFGIELNPV 383

Query: 257 YIDIATKR 264
           Y+D+A +R
Sbjct: 384 YVDVAIER 391


>gi|317013156|gb|ADU83764.1| type IIS restriction enzyme M2 protein (mod) [Helicobacter pylori
           Lithuania75]
          Length = 287

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 115/289 (39%), Gaps = 44/289 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +K+   +S + + ++   SVDLI   PPY N++   +    D        +       +E
Sbjct: 4   NKVFYHSSTN-MHEVLDNSVDLIITSPPYFNIKDYTKNGTQDLQHSAQHVEDLGALEKYE 62

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVI-----------GSYHNIFRIGT-------MLQNL 121
            Y        L C R LKPNG L +             +++N             +L +L
Sbjct: 63  DYLLGLLKVWLECYRALKPNGKLCINVPLMPMLKKVLNTHYNRHIFDLHADIQHSILHDL 122

Query: 122 N--------FWILNDIVWRKSNP--------MPNFRGRRFQNAHETLIWASPSPKAKGYT 165
           N         ++L+  +W+++NP         P  R    QN  E +       K K  T
Sbjct: 123 NNTLENKPKMFLLDVYIWKRTNPTKRLMFGSYPYPRNFYAQNTIEFIGVFVKDGKPKQPT 182

Query: 166 FNYDALKAANEDVQ---MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK 222
                     ++      +  W IPI + ++    K     H       L  R++   + 
Sbjct: 183 EEQKEQSQLTQEEWVEFTKQIWEIPIPNKNDIAFGK-----HAALMSAELARRLIRLYSC 237

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
            GD++LDPF GSGT+   AK L+R+FIG E+ ++Y  +  +++ ++   
Sbjct: 238 VGDVVLDPFSGSGTTLREAKLLKRNFIGYELYENYKPLIEQKLGNLFDF 286


>gi|198276338|ref|ZP_03208869.1| hypothetical protein BACPLE_02533 [Bacteroides plebeius DSM 17135]
 gi|198270780|gb|EDY95050.1| hypothetical protein BACPLE_02533 [Bacteroides plebeius DSM 17135]
          Length = 254

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 89/265 (33%), Gaps = 47/265 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            + K + + V+  LP  S+DL+  DPP+ +                    WDK   F   
Sbjct: 11  TLYKADCLEVMPFLPESSIDLVLCDPPFGI----------------TASQWDKIIPFPEM 54

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGS--YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                      RRV K N    + GS  + ++ R G +          D VW KS     
Sbjct: 55  -------WKEIRRVRKENAPTVLFGSEPFSSLLRCGNL-----EEFKYDWVWEKSKASNF 102

Query: 140 FRGRRFQ-NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
              ++    AHE +                                +  + + + R  N+
Sbjct: 103 LLAKKQPLKAHELISVFGKGRTPYYPIMEEGEPYGNRTKRGSNWTGIGKVPNPTFRNENR 162

Query: 199 ----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
                           +G+ +H  QKP ALL  ++ + TK GD +LD   GS ++     
Sbjct: 163 GTRYPRSVIYFKTAESEGKTIHVNQKPIALLQYLIRTYTKEGDTVLDFASGSMSTAIACI 222

Query: 243 KLRRSFIGIEMKQDYIDIATKRIAS 267
              R  I IE  + +     KR+ +
Sbjct: 223 YTHRKCICIEKDETHFSQGEKRVRN 247


>gi|121610449|ref|YP_998256.1| DNA methylase N-4/N-6 domain-containing protein [Verminephrobacter
           eiseniae EF01-2]
 gi|121555089|gb|ABM59238.1| DNA methylase N-4/N-6 domain protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 331

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 54/306 (17%), Positives = 104/306 (33%), Gaps = 67/306 (21%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
              +S+ +L +LP  S++L+   PP+ LQ        D                   Y  
Sbjct: 22  YVADSLDMLRQLPDNSINLVMTSPPFALQRQKDYGNKDQ----------------HEYID 65

Query: 84  FTRAWLLACRRVLKPNGTLW-----------VIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           +   +     + L P+G+              + S +N   +      + F +  +  W 
Sbjct: 66  WLTEFATLVYQKLTPDGSFVLDLGGAYQKGLPVRSLYNYRVLIRFCDEIGFHLAEEFFWF 125

Query: 133 KSNPMPNF------RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
             + +P+       R  R +++  T+ W S +   K       A  +      ++     
Sbjct: 126 NPSKLPSPIEWVNKRKIRAKDSVNTVWWLSKTEWPKADVSKVLAEYSERMKKLIKDPEAY 185

Query: 187 ----PICSGSE------------------------------RLRNKDGEKLHPTQKPEAL 212
                  SG +                              +L  + G + HP + P  L
Sbjct: 186 YSPAKRPSGHDIGSSFGKDNGGSIPSNLLQISNSEANSQYLKLCKEVGIQAHPARFPAKL 245

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
               +   T+P D+++D F GS T+G V +   R ++  E  Q+Y+  +  R    QP+ 
Sbjct: 246 PEFFIRYLTEPNDLVVDIFGGSNTTGHVCESEGRRWLAFEQLQEYLSASVFRFMQDQPIE 305

Query: 273 NIELTV 278
           +I+ T 
Sbjct: 306 SIKTTF 311


>gi|302343976|ref|YP_003808505.1| ParB domain protein nuclease [Desulfarculus baarsii DSM 2075]
 gi|301640589|gb|ADK85911.1| ParB domain protein nuclease [Desulfarculus baarsii DSM 2075]
          Length = 395

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 93/248 (37%), Gaps = 33/248 (13%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G+S     V   L      L+  DPPY ++ +       +  +           
Sbjct: 163 RHRLMCGDSTSADDVDRLLAGVRPHLMVTDPPYGVEYD---PAWRNEALSGQKTKRTGMV 219

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             +    +  AW       L P    +V     +   +   L    F I + I+W K   
Sbjct: 220 LNDDRADWREAW------TLFPGDVAYVWHGALHAATVAESLVACGFGIRSQIIWAKERL 273

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +       +   HE   +A                   N D +  + W IP        +
Sbjct: 274 V--LSRGHYHWMHEPCWYAVKDKAH------------WNGDRKQVTIWNIP-------SK 312

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
            +D + +H TQKP   + R + +++ PG  + +PF GSGT+   A+   R+ + +E+   
Sbjct: 313 GQDADTIHGTQKPVECMKRPMENNSSPGQAVYEPFSGSGTTIIAAEITGRACLAMELNPA 372

Query: 257 YIDIATKR 264
           Y+D+A KR
Sbjct: 373 YVDVAVKR 380


>gi|149882909|ref|YP_001294846.1| DNA methylase [Burkholderia phage BcepNY3]
 gi|148763560|gb|ABR10543.1| DNA methylase [Burkholderia phage BcepNY3]
          Length = 243

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 62/271 (22%), Positives = 107/271 (39%), Gaps = 50/271 (18%)

Query: 18  EWKDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           E  ++  ++ G+ +  + +LPA+SVDL+  D PY    N                 WD  
Sbjct: 3   EIANRCELMFGDCLLAMHELPAQSVDLVLCDLPYGTTRN----------------RWDTP 46

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
                    +R W +A R V KP   + +         +G    +    +  + +W K+N
Sbjct: 47  ------LDLSRLW-VAYRHVCKPGAPVLLFAQTPFDKVLGA---SNLPELRYEWIWEKTN 96

Query: 136 PMPNFRGRRFQ-NAHETLI----------------WASPSPKAKGYTFNYDALKAANEDV 178
                  +R    AHE ++                    +    GY+ NY A   ++ D 
Sbjct: 97  ATGFLNAKRAPLKAHENILVFCDRAPTYRPIKTSGHVRKTSTRLGYSSNYGAQAVSSYDS 156

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
             R    +   +      +K   KLHPTQKP ALL  ++ +   PG ++LD   G  ++ 
Sbjct: 157 TERYPRSVLRFAS-----DKQRSKLHPTQKPVALLEYLIRTHAAPGAVVLDNCMGCASTA 211

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
             A +   +FIGIE   ++ + A +R+   +
Sbjct: 212 LAAMQAGCAFIGIENDVEHFETAQRRVRDYR 242


>gi|309781003|ref|ZP_07675742.1| prophage LambdaMc01, DNA methyltransferase [Ralstonia sp.
           5_7_47FAA]
 gi|330824600|ref|YP_004387903.1| DNA methylase N-4/N-6 domain-containing protein [Alicycliphilus
           denitrificans K601]
 gi|308920306|gb|EFP65964.1| prophage LambdaMc01, DNA methyltransferase [Ralstonia sp.
           5_7_47FAA]
 gi|329309972|gb|AEB84387.1| DNA methylase N-4/N-6 domain protein [Alicycliphilus denitrificans
           K601]
          Length = 471

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 58/319 (18%), Positives = 102/319 (31%), Gaps = 59/319 (18%)

Query: 21  DKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            ++I G++     V   +   +  L F  PPY  Q +                       
Sbjct: 177 HRLICGDATDRDVVAALMQGDAARLCFTSPPYGNQRDYTSG------------------G 218

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH-------NIFRIGTMLQNLNFWILNDIV 130
              +D   R    A   +      L  +G  H               ++   +      V
Sbjct: 219 IADWDGLMRGVF-AHLPMAGDGQVLVNLGLIHRDNEVIPYWDAWLGWMRQQGWRRFAWYV 277

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWAS-------PSPKAKGYTFNYDALKAANEDVQMRSD 183
           W +   MP     RF  + E +   +            K            +       D
Sbjct: 278 WDQGPGMPGDWAGRFAPSFEFVFHFNRESRKPNKIVPCKHAGQESHLRADGSSTAMRGKD 337

Query: 184 WLIPICSGS----------------ERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDI 226
             +   +                   R + K G+ + HP   P AL   ++ + T  GDI
Sbjct: 338 GEVGGWTHKGLPTQDTRIPDSVIRVMRHKGKIGQDIDHPAVFPVALPEFVIEAYTDAGDI 397

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
           + +PF GSGT+   A++  R    +E+   Y+D+A KR     P   I +T++   ++  
Sbjct: 398 VFEPFGGSGTTMLAAERTGRICCSVEIAPQYVDVAIKRFQQNHP--GIPVTLIATGQSFE 455

Query: 287 RVAFNLLVERGLIQPGQIL 305
           +VA    VER      +++
Sbjct: 456 QVA----VERATTPDAEVV 470


>gi|224436928|ref|ZP_03657909.1| DNA methylase [Helicobacter cinaedi CCUG 18818]
 gi|313143399|ref|ZP_07805592.1| modification methylase [Helicobacter cinaedi CCUG 18818]
 gi|313128430|gb|EFR46047.1| modification methylase [Helicobacter cinaedi CCUG 18818]
          Length = 267

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 58/283 (20%), Positives = 107/283 (37%), Gaps = 52/283 (18%)

Query: 15  SIFEWKDKIIKGNSISVL-EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           S     +     + +  + +++   SVDL+   PPY                       D
Sbjct: 8   STNNLLNNFYIDDCVHFMQKRMHDNSVDLVVTSPPY-----------------------D 44

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGS-------YHNIFRIGTMLQNLNFWI 125
               ++ Y+    +      R++K  G + WV+G            F+     Q + F  
Sbjct: 45  NLRDYKGYNFEFESIANEIFRIVKKGGIVVWVVGDKIKNGNKSLTSFKQALYFQKIGFNA 104

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASP------SPKAKGYTFNYDALKAANEDVQ 179
            + +++ K N  P  R   + N +E +   S       +P  +    N   +  AN+   
Sbjct: 105 HDVMIYAKKNT-PFMRSNAYTNGYEYMFIFSKGKPKTFNPLKEKTARNGFEMLVANKKSD 163

Query: 180 MRSDWLIP-------------ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
            +++ ++                 G     N      HP   PE L    ++S +  GDI
Sbjct: 164 GKNNKVLKELKQEKTKTNIWYYAVGLGGTTNDREAFKHPAMYPEQLALDHILSWSNEGDI 223

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           + DP  GSGT+  +A   +R+FIG+++  +YI+IA KR+   +
Sbjct: 224 VFDPMCGSGTTCKMAFLAKRNFIGVDISWEYIEIAKKRLDKYK 266


>gi|328552988|gb|AEB23480.1| Modification methylase BamHII [Bacillus amyloliquefaciens TA208]
          Length = 279

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 97/281 (34%), Gaps = 59/281 (20%)

Query: 21  DKIIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +KI   + +  +++ +   ++DL    PPY                       D   ++ 
Sbjct: 4   NKIHNNDCVQFMKENIGDCTIDLTVTSPPY-----------------------DDLRNYN 40

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI--------FRIGTMLQNLNFWILNDIVW 131
            Y            RV K  G +  +              FR     + L F + + +++
Sbjct: 41  GYSFNFEETAQELYRVTKEGGVVVWVVGDKTHKGSETGSSFRQALYFKELGFNLHDTMIY 100

Query: 132 RKSNPMPNFRGRRFQNAHETLIWAS--------------PSPKAKGYTFNYDALKAANED 177
            K +     + R +Q      I++                    K +   +       + 
Sbjct: 101 EKDSISFPDKNRYYQIFEYMFIFSKGKPKTINLLADRKNKWYNGKKHIKGHYRKMDGEKV 160

Query: 178 VQMRSD-----------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
              + +           W IP  +G ++         HP   PE L    ++S +  GDI
Sbjct: 161 RHHKQNLLKEFGVRFNIWRIP--NGHQKSTLDKIAFQHPAIFPEKLAEDHILSWSNEGDI 218

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           + DPF GSGT+  +A    R +IG E+ ++Y DIA +R+ +
Sbjct: 219 VFDPFMGSGTTAKMAALNNRKYIGTEISKEYCDIANERLKN 259


>gi|257389071|ref|YP_003178844.1| DNA methylase N-4/N-6 domain protein [Halomicrobium mukohataei DSM
           12286]
 gi|257171378|gb|ACV49137.1| DNA methylase N-4/N-6 domain protein [Halomicrobium mukohataei DSM
           12286]
          Length = 352

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 60/257 (23%), Positives = 98/257 (38%), Gaps = 25/257 (9%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNL--QLNGQLYRPDHSLVDAVTDSWDK 74
            E   +++ G++  +   LP  SVDL+   PPY +    +      D ++ DA+ D  D 
Sbjct: 1   METTHRVVTGDAREL--ALPDDSVDLVVTSPPYPMIEMWDDIFAALDPAVEDALADE-DG 57

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWV------------IGSYHNIFRIGTMLQNLN 122
             +F+              RVL+P G   +              S+ N   I T L +  
Sbjct: 58  ERAFQLMHDVLDTVWAEVVRVLRPGGIACINVGDATRSIGDGFRSFSNHAEITTRLTDRG 117

Query: 123 FWILNDIVWRKSNPMP---NFRGRRFQNAHETLIWAS----PSPKAKGYTFNYDALKAAN 175
              L DI+WRK +         G    NA+ TL         + + + +    D    + 
Sbjct: 118 LRALPDILWRKPSNRATKFMGSGMLPPNAYPTLEHEHVLVFRNGQRRTFPPGDDDRYESA 177

Query: 176 EDVQMRSDWLIPICS-GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
              + R+ W   +     ER   +DG +      P  L  R++   +  GD +LDPF G+
Sbjct: 178 YFWEERNVWFSDLWELTGERQAVEDGLRERSGAFPLELPYRLVSMFSTYGDTVLDPFLGT 237

Query: 235 GTSGAVAKKLRRSFIGI 251
           GT+   A    R  +G 
Sbjct: 238 GTTTMAALVAGRDSVGY 254


>gi|117926107|ref|YP_866724.1| nuclease [Magnetococcus sp. MC-1]
 gi|117609863|gb|ABK45318.1| ParB domain protein nuclease [Magnetococcus sp. MC-1]
          Length = 448

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 59/289 (20%), Positives = 108/289 (37%), Gaps = 37/289 (12%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNG------QLYRPDHSLVDAVTDS 71
            +++ G+S+    V+  +  +   L   DPPY +  +G      +  R   SL    +DS
Sbjct: 180 HRLLCGSSLNPDDVIRLMNGERAILFATDPPYLVDYDGTNHPGSKESRKRESLNKDWSDS 239

Query: 72  ----WDKFS-SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
               WD  S   E Y+ F RA +      ++PN   +   +      +  + + +  +  
Sbjct: 240 YGVTWDDSSQGPELYEGFIRAAID---HAIEPNAAWYCWHASKRQAMLEAVWEKMGAFQH 296

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
             I+W K   +       +++    + W   +   K            N    + + W I
Sbjct: 297 QQIIWNKEKGVLTRSKYLWKHEPCLMGWIKGNMPPKI-----------NGAEFLSTVWDI 345

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
              SG ER         HPT KP    +  +    + G +  +PF GSG+     +   R
Sbjct: 346 RGLSGEERPD-------HPTPKPLDCFAIPMRQHVERGGLCYEPFSGSGSQIMAGEMTGR 398

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
               +E+   Y+D+A KR   +Q  G I     +G  +   +A    ++
Sbjct: 399 RVHAMEISPVYVDVAVKRF--IQATGKIVYLDGSGGESFDEIAAQRGID 445


>gi|254441811|ref|ZP_05055304.1| ParB-like nuclease domain family [Octadecabacter antarcticus 307]
 gi|198251889|gb|EDY76204.1| ParB-like nuclease domain family [Octadecabacter antarcticus 307]
          Length = 398

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 90/232 (38%), Gaps = 13/232 (5%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K +I  G++      +  +      ++F DPPYN+ + G +     +      ++  + +
Sbjct: 172 KHRIFCGDARSADDFVALVGDGKAAMVFTDPPYNVPIVGHVSGKGKACHREFHEASGEMT 231

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
               + AF    L       +     +V   + ++  +    Q      LN  VW K+N 
Sbjct: 232 R-SGFAAFLDEVLANTAHSCRDGAISFVCMDWRHMGELLEAGQRAFDAYLNLCVWAKTNG 290

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
                G  +++ HE +         KG   + + ++         + W     + + R  
Sbjct: 291 G---MGSLYRSQHELVF-----VFRKGKAQHRNNVQLGRFGRNRTNVWTYAGVN-TFREG 341

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
             +    HPT KP A++   ++  TK G+++LDPF G G +   A++  R  
Sbjct: 342 RMEELSAHPTAKPVAMVKDAILDVTKRGEVVLDPFLGGGATLIAAEQSGRHC 393


>gi|154500925|ref|ZP_02038963.1| hypothetical protein BACCAP_04610 [Bacteroides capillosus ATCC
           29799]
 gi|150270255|gb|EDM97590.1| hypothetical protein BACCAP_04610 [Bacteroides capillosus ATCC
           29799]
          Length = 264

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 61/261 (23%), Positives = 87/261 (33%), Gaps = 41/261 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF-EAY 81
           +   + I  L  LP  SVD++  DPPY    N                 WD      E +
Sbjct: 21  LFLMDGIEGLRSLPRHSVDMLLTDPPYGTTRN----------------FWDVPLPLPELW 64

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           DA         +  +KP+G +              +  +    +  + VW KS       
Sbjct: 65  DA--------VKWAVKPDGAVLFFA---QCPYDKVLGASNLSMLRYEWVWYKSRCTGFLN 113

Query: 142 GRRF--QNAHETLIWASPSPKAKGY--TFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
            RR   +     L++    P               A N              SGSE    
Sbjct: 114 ARRAPLKKTENILVFYQKLPLYNPQFEQGKPYKKIAGNNGNSTNYGKFTRSGSGSEDGLR 173

Query: 198 KDGEKL---------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
             G  L         HPTQKP AL    + + T+PG++++D   GS T+   A    R F
Sbjct: 174 FPGNVLTFPAVQRTVHPTQKPVALCEYFIKTYTRPGEVVVDICAGSATTAVAALNTGRRF 233

Query: 249 IGIEMKQDYIDIATKRIASVQ 269
           I  E    Y   AT+RI   +
Sbjct: 234 ICFETVPAYYAAATERIRVAR 254


>gi|195940396|ref|ZP_03085778.1| putative methylase [Escherichia coli O157:H7 str. EC4024]
          Length = 209

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 78/194 (40%), Gaps = 38/194 (19%)

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
           D + +       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 30  DEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYTSKAAY 89

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ +                             
Sbjct: 90  VGYRHECAYILAKGRPALPQKPLPDVLGWKY----------------------------- 120

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 121 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 177

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 178 QYHRAGQQRLAAVQ 191


>gi|222112352|ref|YP_002554616.1| DNA methylase n-4/n-6 domain-containing protein [Acidovorax ebreus
           TPSY]
 gi|221731796|gb|ACM34616.1| DNA methylase N-4/N-6 domain protein [Acidovorax ebreus TPSY]
          Length = 394

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 107/294 (36%), Gaps = 65/294 (22%)

Query: 22  KIIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           KI +G+S+  L  K+   SV+LI   PP+ L         D +                 
Sbjct: 78  KIYQGDSLEYLHHKVKPGSVNLIMTSPPFGLVRKKSYGNEDAA----------------E 121

Query: 81  YDAFTRAWLLACRRVLKPNGTL-------WVIGSYH---NIFRIGTML-QNLNFWILNDI 129
           Y  + R +     RVLK +G+L       W  GS       F++  ML +   F +  + 
Sbjct: 122 YCEWFRPFAEGFHRVLKDDGSLVIDIGGAWKSGSPTRSLYHFKLLVMLCEEYGFHLAQEH 181

Query: 130 VWRKSNPMPNF------RGRRFQNAHETLIWASPSPKAK--------------------G 163
            W     +P+       R  R ++A   + W S +P  K                    G
Sbjct: 182 YWWNPAKLPSPAEWVNVRRVRVKDAINCVWWLSKTPFPKASNKRVLAPYSDSMKGLLKNG 241

Query: 164 YTFNYDALKAANEDVQMRSDW------LIPICSG-----SERLRNKDGEKLHPTQKPEAL 212
           YT           D   + +       L+ I +       +     +G  +HP + P  L
Sbjct: 242 YTAKLRPSGHDISDKFSKDNGGSVPPNLLAIANTESNGVYQEYCRANGIDIHPARFPALL 301

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
               +   T PGD+++DPF GS  +G VA+ L R +  IE+  +YI     R  
Sbjct: 302 PEYFIRFLTDPGDLVVDPFGGSCVTGMVAEALGRKWACIELSSEYIRGGIGRFQ 355


>gi|302338349|ref|YP_003803555.1| DNA methylase N-4/N-6 domain protein [Spirochaeta smaragdinae DSM
           11293]
 gi|301635534|gb|ADK80961.1| DNA methylase N-4/N-6 domain protein [Spirochaeta smaragdinae DSM
           11293]
          Length = 352

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 63/307 (20%), Positives = 115/307 (37%), Gaps = 31/307 (10%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDKF 75
            +    I+ G++ + +  + A+++ L+   PPY  + +   L+   +  +    ++ + +
Sbjct: 1   MQTTHDILFGSARN-MRTIEAETIALVVTSPPYPMISMWDLLFALQNPDIKVALENGNGY 59

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLW-VIGS-----------YHNIFRIGTMLQNLNF 123
            +FEA  +        C RVL P G L   IG            + N  RI +  + L F
Sbjct: 60  KAFEAMHSILDEVWRECSRVLMPGGFLCINIGDATRKIGAHFRLFTNHARIISSCEALGF 119

Query: 124 WILNDIVWRKSNPMPN--------FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
             L  ++WRK    P           G      HE ++        +         K + 
Sbjct: 120 HSLPPLLWRKQTNSPTKFMGSGMLPAGAYVTLEHEYILVFRKGGNRRFSEDGRIIRKRSA 179

Query: 176 EDVQMRSDWLIPIC--SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
              + R+ W   +    G  +  ++ G +      P  L  R++   +   D +LDPF G
Sbjct: 180 LFWEERNSWFSDLWDFKGIRQPLSQKGCRSRSAAFPFELAFRLINMFSIQNDTVLDPFLG 239

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
           +GT  A A    R+ +G+E+      +  + I +    GN        KR    + F   
Sbjct: 240 TGTVTAAAIASARNSVGVEIDSGLCGLIKETITAATEAGNKR----QSKRLSDHLHF--- 292

Query: 294 VERGLIQ 300
           VE   +Q
Sbjct: 293 VEDKELQ 299


>gi|265984913|ref|ZP_06097648.1| DNA methylase N-4/N-6 domain-containing protein [Brucella sp.
           83/13]
 gi|264663505|gb|EEZ33766.1| DNA methylase N-4/N-6 domain-containing protein [Brucella sp.
           83/13]
          Length = 215

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 58/228 (25%), Positives = 92/228 (40%), Gaps = 37/228 (16%)

Query: 48  PYNLQLNGQLYRPDHSLVDA------VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
           PY   ++G+ YR   S   A        D   +    +    + R       RVLK  G 
Sbjct: 11  PY---VHGRAYRRTPSQRHAEAVAAHFRDRQGRTVVNDDNGHWLRPAFNQIHRVLKDGGF 67

Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNFRGRRFQNAHETLIWASPSPK 160
                 +H +       +   F ++  IV+RK       F   + + A+         P 
Sbjct: 68  AISFYGWHKVDLFMDAWKTAGFRVVGHIVFRKHYASSAKFLRYQHEQAYLLAKGNVRFP- 126

Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
                           D  + +    P            G +LHPTQKP   L+ ++ + 
Sbjct: 127 ----------------DSPIPNVIDFPYT----------GNRLHPTQKPVEALAPLIKAF 160

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           TKP D++LDPF GSG++ A A+ L R +IGIE+ +++   A KR+AS+
Sbjct: 161 TKPDDLVLDPFCGSGSTLAAAQHLGRDWIGIELDKNHYATACKRLASM 208


>gi|298483961|ref|ZP_07002131.1| DNA (cytosine-5-)-methyltransferase [Bacteroides sp. D22]
 gi|298269870|gb|EFI11461.1| DNA (cytosine-5-)-methyltransferase [Bacteroides sp. D22]
          Length = 256

 Score =  122 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 58/271 (21%), Positives = 94/271 (34%), Gaps = 47/271 (17%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           +FE    + K + + V+  L   S+DL+  DPP+ +                    WDK 
Sbjct: 5   VFEKDITLYKADCLEVMPLLSESSIDLVLCDPPFGI----------------TASQWDKI 48

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS--YHNIFRIGTMLQNLNFWILNDIVWRK 133
                   F++ W    RRV K N    + GS  + ++ R G + +        D VW K
Sbjct: 49  IP------FSKMW-EEIRRVRKDNAPTALFGSEPFSSLLRCGNLAE-----FKYDWVWEK 96

Query: 134 SNPMPNFRGRRFQ-NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           S        ++    AHE +                                +  + + +
Sbjct: 97  SKASNFLLAKKQPLKAHELISIFCNGRTPYYPIMEEGEPYENRTKRGSNWTGVNKVPNPT 156

Query: 193 ERLRNK----------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
            R  NK                +G+ +H  QKP ALL  ++ + TK GD +LD   GS +
Sbjct: 157 FRNENKGTRYPRSVKYFKTAESEGKTIHVNQKPVALLKYLIKTYTKEGDTVLDFASGSMS 216

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           +        R  I IE    +     +RI +
Sbjct: 217 TAIACIHTNRKCICIEKDDMHFLRGEERIRN 247


>gi|257486160|ref|ZP_05640201.1| DNA methylase N-4/N-6 [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331010490|gb|EGH90546.1| DNA methylase N-4/N-6 [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 360

 Score =  122 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 120/365 (32%), Gaps = 118/365 (32%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            +I+ G+ I V+  LP +SV      PPY    +             V        +   
Sbjct: 5   HQILLGDCIDVMRTLPDESVHTCVTSPPYYGLRDY-----------GVEGQIGLEETPAE 53

Query: 81  YDAFTRAWLLACRRVLKPNGTLW-VIGSYH------------------------------ 109
           + A         RRVL+ +GT+W  +G  +                              
Sbjct: 54  FIARLVDVFREVRRVLRADGTIWVNMGDSYATGGRGGGGSYMAERGDAAWKGKGSATGWR 113

Query: 110 -------------NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
                          +R+   LQ+  +++  DI+W K NPMP     R   AHE L   S
Sbjct: 114 SAPAGFKHKDLMGMPWRLAFALQDDGWYLRQDIIWHKPNPMPESTRDRCTKAHEYLFLLS 173

Query: 157 PSPKAKGYTFNYDALKAA-----------NEDVQMRSDWLIPICSGSER--LRNKDGEKL 203
               ++ Y ++ DA+K             N D Q  SD +    +G  +     +D  K 
Sbjct: 174 K---SRRYFYDQDAIKEPVAASSIARLSQNVDDQAGSDRVPGKTNGPMKAVRSRRDSFKR 230

Query: 204 HPTQKPEALL----------------------SRILVS-----------STKPGDII--- 227
             +++ +A+                        R + S           +T P D+I   
Sbjct: 231 EDSKREQAIPGQAFGTHRPDRDDSDYPLDVRNKRSVWSVPTVGYKGAHFATFPPDLIRPC 290

Query: 228 -----------LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
                      LDPF G+GT+  V+ +  R  I  E+   Y  +A  RI S    G  ++
Sbjct: 291 ILASAPRGGVVLDPFGGAGTTSLVSMQEGRRSIICELNPGYAALARARIDSAWLDGAAQM 350

Query: 277 TVLTG 281
            V   
Sbjct: 351 DVFRD 355


>gi|298346399|ref|YP_003719086.1| putative site-specific DNA-methyltransferase [Mobiluncus curtisii
           ATCC 43063]
 gi|298236460|gb|ADI67592.1| possible site-specific DNA-methyltransferase
           (cytosine-N(4)-specific) [Mobiluncus curtisii ATCC
           43063]
          Length = 405

 Score =  122 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 62/303 (20%), Positives = 106/303 (34%), Gaps = 52/303 (17%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +D  + G+++ ++EKL   SV+ +    PY           +    D    S+    + E
Sbjct: 101 RDSFVVGDALQLIEKLKDGSVNAVVTSTPYWAMRVYDEPG-ERLWADGEYCSFGLEQTPE 159

Query: 80  AYDAFTRAWLLACRRVLKPNGTLW-VIGSYHNIF-------------------------- 112
            +   +   L A    +  +G++W  I   +N                            
Sbjct: 160 GFIRHSVEVLYALLPKIASDGSVWWNIMDSYNTRTQIRGSAVETLHAMQGKDERSWKDHK 219

Query: 113 ---------------------RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
                                RI      + +++ + I W K    P  +  R     E 
Sbjct: 220 YLRYSAGHSYLKDGEQCLIPQRIAQRAAQIGYYVKSTISWCKQATTPEPQQSRVSRNVEY 279

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           ++  +     K   FN         D+  R        S    L    G   H  Q P  
Sbjct: 280 ILHLTRERTPK---FNKATYLELPSDLGGRQSLESDKLSDFWYLPTSSGRDGHGAQFPVQ 336

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           L  R +  ST PGD++LDPF G+GT+   AKKL R++IG ++  +Y+  A + +AS+   
Sbjct: 337 LPGRCIAISTDPGDVVLDPFMGAGTTAIAAKKLDRNYIGFDVSAEYLATAERVLASMTAQ 396

Query: 272 GNI 274
             +
Sbjct: 397 QAL 399


>gi|154500910|ref|ZP_02038948.1| hypothetical protein BACCAP_04595 [Bacteroides capillosus ATCC
           29799]
 gi|150270273|gb|EDM97607.1| hypothetical protein BACCAP_04595 [Bacteroides capillosus ATCC
           29799]
          Length = 264

 Score =  122 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 82/257 (31%), Gaps = 39/257 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +   + I  L  LP  SVD++  DPPY    N                 WD         
Sbjct: 21  LFLMDGIEGLRSLPRHSVDMLLTDPPYGTTRN----------------FWDVPLP----- 59

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
                   A +  +KP+G +              +  +    +  + VW KS        
Sbjct: 60  --LPELWEAVKWAVKPDGAVLFFA---QCPYDKVLGASNLSMLRYEWVWYKSRCTGFLNA 114

Query: 143 RRF--QNAHETLIWASPSPKAKGY--TFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           RR   +     L++    P               A N              SGSE     
Sbjct: 115 RRAPLKKTENILVFYQKLPLYNPQFEQGKPYKKIAGNNGNSTNYGKFTRSGSGSEDGLRF 174

Query: 199 DGEKL---------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
            G  L         HPTQKP AL    + + T+PG+++ D   GS T+   A    R FI
Sbjct: 175 PGNVLTFPAVQRTVHPTQKPVALCEYFIKTYTRPGEVVADICAGSATTAVAALNTGRRFI 234

Query: 250 GIEMKQDYIDIATKRIA 266
             E    Y   AT+RI 
Sbjct: 235 CFETVPAYYAAATERIR 251


>gi|254450262|ref|ZP_05063699.1| modification methylase DpnIIB [Octadecabacter antarcticus 238]
 gi|198264668|gb|EDY88938.1| modification methylase DpnIIB [Octadecabacter antarcticus 238]
          Length = 422

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 96/247 (38%), Gaps = 32/247 (12%)

Query: 21  DKIIKGNSI--SVL-EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            ++I G+S    V+   L  +   L+  DPPY +Q +        +     T        
Sbjct: 177 HRLICGDSTSADVVGRLLGDEKPLLMVTDPPYGVQYDPGWRNKAGAAKTKRTGK----VL 232

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            +    +  AW       L P    +V     +   +   L    F I + I+W K   +
Sbjct: 233 NDDRADWREAW------ALFPGDVAYVWHGALHAATVADSLIASGFNIRSQIIWAKDRLV 286

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
            +     +Q  HE   +A  +     +            D +  + W I         ++
Sbjct: 287 LSRGDYHWQ--HEPCWYAVRAKGKGHW----------AGDRKQTTLWQIA-------NKD 327

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           +D + +H TQKP   + R +++++ PG  + +PF GSGT+   A+   R   GIE+   Y
Sbjct: 328 QDADTVHGTQKPVECMRRPILNNSSPGQAVFEPFMGSGTTLIAAETTARVCYGIELNPAY 387

Query: 258 IDIATKR 264
           +D+  +R
Sbjct: 388 VDVVIER 394


>gi|226355112|ref|YP_002784852.1| DNA methylase [Deinococcus deserti VCD115]
 gi|226317102|gb|ACO45098.1| putative DNA methylase [Deinococcus deserti VCD115]
          Length = 337

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 68/331 (20%), Positives = 114/331 (34%), Gaps = 58/331 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH-------SLVDAVTDSWD 73
           ++I +G+S  +L+++ A S+DL    PPY +  + + Y   +       S V A  D   
Sbjct: 6   NQIHQGDSRKLLKEIDANSIDLSVWSPPYYVGKDYERYLESYQDWVNLLSAVIAEHDRIL 65

Query: 74  KFSSF-------------EAYDAFTRAWLLACRRVLKPNGTLW------VIGSYH----- 109
           K   F             E    F    +   R  +     L           Y      
Sbjct: 66  KPGGFMVINIADILVFKDEEIPRFQALNITKQRSAITREDVLAAKENNPTFSRYQLAELL 125

Query: 110 -------------NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE------ 150
                        N  R G         ++ D+V   ++    +   R   A +      
Sbjct: 126 GTSEQTIDRRLNGNNIRGGKYNTQTRVKLVGDVVSDAAHAARLYLYDRRIWAKDAAWENS 185

Query: 151 ---TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
              +L + S       Y F        +       +W      G  R  +      H  +
Sbjct: 186 KWTSLSYRSVDEFEYIYIFWKPGETVVDRRRLTGDEWKEWGSRGIWRFPSVRANDDHEAK 245

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            P  L +R++   T PGD +LD F GSGT+   A  L R+FIG+E+  +Y+ ++ + +A+
Sbjct: 246 FPLELPTRVIKLLTNPGDTVLDCFMGSGTTAVAATNLNRNFIGLELLPEYVALSRRNVAA 305

Query: 268 VQPLG-----NIELTVLTGKRTEPRVAFNLL 293
               G       +   L+ +RTE   A  L 
Sbjct: 306 AVQRGHGLLRQDKDLRLSSERTEEAAAVGLF 336


>gi|56416259|ref|YP_153334.1| DNA methyltransferase SptAIM [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197365182|ref|YP_002144819.1| DNA methyltransferase SptAIM [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|11992068|gb|AAG42425.1|AF306456_2 DNA methyltransferase SptAIM [Salmonella enterica subsp. enterica
           serovar Paratyphi A]
 gi|22135356|gb|AAM93161.1|AF508974_1 DNA methyltransferase SbaIM [Salmonella enterica]
 gi|56130516|gb|AAV80022.1| DNA methyltransferase SptAIM; protects DNA against PvuII
           endonuclease [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197096659|emb|CAR62274.1| DNA methyltransferase SptAIM; protects DNA against PvuII
           endonuclease [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 331

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 56/295 (18%), Positives = 104/295 (35%), Gaps = 67/295 (22%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
              +S+ +LE +P  S++L+   PP+ LQ   +    D                 E Y  
Sbjct: 18  YIADSLEMLESMPDNSLNLVMTSPPFALQRKKEYGNHDQ----------------EQYID 61

Query: 84  FTRAWLLACRRVLKPNGTLW-----------VIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           +   +     + LK +G+              + S +N   +  M+  + F +  D  W 
Sbjct: 62  WFLKFGELVFKKLKDDGSFVVDFGGAYMKGVPVRSVYNFRVLIRMIDEVGFHLAEDFYWF 121

Query: 133 KSNPMPNF------RGRRFQNAHETLIWASPSPKAKGYTFNYDALKA---------ANED 177
             + +P+       R  R +++  T+ W S +   K          +          N+ 
Sbjct: 122 NPSKLPSPIEWVNKRKLRVKDSVNTIWWFSKTEWPKSDITKVLVPYSDRMKKLIEDPNKF 181

Query: 178 VQMRSDWLIPICSGSERLRN-------------------------KDGEKLHPTQKPEAL 212
              +        S S    N                         K G K HP + P  L
Sbjct: 182 YSPKMRPSGHDISSSFGKDNGGAIPPNLLQIPNSESNGGYLSGCKKIGVKGHPARFPSKL 241

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
               +   T+PGD+++D F GS T+G+ A++L+R ++  E+  +Y+  +  R   
Sbjct: 242 PEFFINMLTEPGDLVVDIFGGSNTTGSAAEQLKRKWLSFELSPEYVAASVFRFTD 296


>gi|326784623|ref|YP_004324886.1| DNA adenine methylase [Prochlorococcus phage P-SSM7]
 gi|310004656|gb|ADO99048.1| DNA adenine methylase [Prochlorococcus phage P-SSM7]
          Length = 253

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 80/248 (32%), Gaps = 37/248 (14%)

Query: 33  EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLAC 92
             +   SVD++  D PY                      WD     +             
Sbjct: 23  PTIADNSVDMVLCDLPYGT----------------TACKWDSIIPLDEL-------WKQY 59

Query: 93  RRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL 152
            R+ K +G +    +    F       N+       I  +     P         +HE +
Sbjct: 60  NRICKEDGAMVFTAA--QPFTAILAASNIKNLKYEWIWEKPQGTNPMNAKIMPLKSHENI 117

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER------------LRNKDG 200
           +              Y    +  +    +   +        R            L+ K  
Sbjct: 118 LVFYRKKPTYNPQMWYSTPYSGFKSDTAKIGEVYGEAQSKHRDNPEGSRYPKTILKYKQE 177

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           + LHPTQKP  L+  ++ + T  G+ +LD   GSGT+G     L R+FIG+E  + Y  I
Sbjct: 178 KGLHPTQKPVGLMEYMIKTYTNKGETVLDSTMGSGTTGLACVNLDRNFIGMESDEKYFKI 237

Query: 261 ATKRIASV 268
           A  RI S+
Sbjct: 238 AEDRIGSL 245


>gi|298252318|ref|ZP_06976120.1| DNA methylase N-4/N-6 domain protein [Ktedonobacter racemifer DSM
           44963]
 gi|297545738|gb|EFH79607.1| DNA methylase N-4/N-6 domain protein [Ktedonobacter racemifer DSM
           44963]
          Length = 567

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 72/362 (19%), Positives = 123/362 (33%), Gaps = 112/362 (30%)

Query: 21  DKIIKGNSISVLEK-LPAKSVDLIFADPP------YNLQLNGQLYRPDHSLVDAVTDSWD 73
           + +  G++  +L +    + VDLI+ DPP      YN+    +      + + A  D+W 
Sbjct: 8   NTLFYGDNFDILREYFIDECVDLIYLDPPFNSNRNYNVLFKDEHGSDSEAQITAFEDTWH 67

Query: 74  KFSSFE-------------------------------AYDAFTRAWLLACRRVLKPNGTL 102
              + E                               AY     A L+   RVLKP G+L
Sbjct: 68  WTVATEHTYYHILNHSSDKVVEMITALRAFIGTNQMMAYLVMMTARLIELHRVLKPTGSL 127

Query: 103 WVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMP---------------NFRGRRF 145
           ++         +  +L  +       N+I+W++++                    RG + 
Sbjct: 128 YLHCDPTASHYLKIILDTIFGAQNFRNEIIWKRTSSHGNVTTTYGDVTDTILYYSRGGKP 187

Query: 146 QNAHETLIWASPSPKA---------KGYTFNYDALKAANEDVQMRSDWLIPICSGS---- 192
                 + +     ++         + YT +         ++        P  +G     
Sbjct: 188 VWNQVYIPYTQKHIESSFTHVDSDGRRYTTSDLRNPGYRPNLIYDYKGYKPHPNGWAVSR 247

Query: 193 ------------ERLRNKDGEKL--------------------------------HPTQK 208
                           NKDG                                   +PTQK
Sbjct: 248 EKMEEYDRQGRLWFPSNKDGRIRLKRYLDESPGHRVQNLWDDIPPISSQAAERLGYPTQK 307

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           P ALL RI+ +S+ PG +ILDPF G GT+ A A+KL R +IGI++    I +   R+ ++
Sbjct: 308 PLALLERIIAASSNPGCVILDPFCGCGTAIAAAQKLERKWIGIDVTHLSIALQKYRLEAM 367

Query: 269 QP 270
            P
Sbjct: 368 FP 369


>gi|11995224|ref|NP_072082.1| PvuIIM [Proteus vulgaris]
 gi|1709165|sp|P11409|MTP2_PROVU RecName: Full=Modification methylase PvuII; Short=M.PvuII; AltName:
           Full=N-4 cytosine-specific methyltransferase PvuII
 gi|1256542|gb|AAA96336.1| PvuIIM [Proteus vulgaris]
          Length = 336

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 59/293 (20%), Positives = 105/293 (35%), Gaps = 67/293 (22%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
             G+S+ +LE  P +S+ L+   PP+ LQ   +    +                   Y  
Sbjct: 31  YIGDSLELLESFPDESISLVMTSPPFALQRKKEYGNLEQ----------------HEYVD 74

Query: 84  FTRAWLLACRRVLKPNGTLW-VIG----------SYHNIFRIGTMLQNLNFWILNDIVWR 132
           +  ++     + LKP+G+     G          S +N   +  M+  + F++  D  W 
Sbjct: 75  WFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVPARSIYNFRVLIRMIDEVGFFLAEDFYWF 134

Query: 133 KSNPMPNF------RGRRFQNAHETLIWASPSPKAKGYTFNYDALKA--ANEDVQMRSDW 184
             + +P+       R  R ++A  T+ W S +   K       A  +    + ++    +
Sbjct: 135 NPSKLPSPIEWVNKRKIRVKDAVNTVWWFSKTEWPKSDITKVLAPYSDRMKKLIEDPDKF 194

Query: 185 LIPICSGSERLRNKD--------------------------------GEKLHPTQKPEAL 212
             P    S     K                                 G K HP + P  L
Sbjct: 195 YTPKTRPSGHDIGKSFSKDNGGSIPPNLLQISNSESNGQYLANCKLMGIKAHPARFPAKL 254

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
               +   T+P D+++D F GS T+G VA++  R +I  EMK +Y+  +  R 
Sbjct: 255 PEFFIRMLTEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRF 307


>gi|315295559|gb|EFU54883.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 16-3]
          Length = 185

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 78/194 (40%), Gaps = 38/194 (19%)

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
           D + +       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 6   DEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYTSKAAY 65

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ +                             
Sbjct: 66  VGYRHECAYILAKGRPALPQKPLPDVLGWKY----------------------------- 96

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 97  ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 153

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 154 QYHRAGQQRLAAVQ 167


>gi|317127854|ref|YP_004094136.1| DNA methylase N-4/N-6 domain protein [Bacillus cellulosilyticus DSM
           2522]
 gi|315472802|gb|ADU29405.1| DNA methylase N-4/N-6 domain protein [Bacillus cellulosilyticus DSM
           2522]
          Length = 278

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/280 (18%), Positives = 100/280 (35%), Gaps = 52/280 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+   +S   + ++   ++DLI   PPY            + +  +  D   K  S++ +
Sbjct: 4   KLYNKDSTVDMNEIQTGTIDLIVTSPPY-----------WNLIDYSHPDQLGKGLSYKMF 52

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSY--------HNIFRIGTMLQNLNFWILNDI---- 129
               +  L  C RVLK +  + ++           +   RI ++  +L  +   ++    
Sbjct: 53  MKKIKKNLFECMRVLKEDAFICIVVGDVRTGEYKQNGRPRIYSLQSSLIEYFTEEMDFDL 112

Query: 130 ---VWRKSNPMPNFRGRRFQNA---------------------HETLIWASPSPKAKGYT 165
                 +   +    G     +                        L++  P  +++G  
Sbjct: 113 FQHFIWEKFGVKKGNGPNIYGSVGTGKNKDKAVGPLLYSDLIMEHILVFRKPGKRSRGSI 172

Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
               + K      +   +WL P+        +K     HP   P+ L  R+++  +   D
Sbjct: 173 AERLSHKENILMKEELVEWLNPVWKIHSPHNSK-----HPATFPDELCKRLILLFSLKDD 227

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
            +LDPF G+GT+   A  L R+  G E+   YIDI    I
Sbjct: 228 KVLDPFAGTGTTLINALNLGRNAYGYEINPKYIDIIKSNI 267


>gi|239625054|ref|ZP_04668085.1| predicted protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521440|gb|EEQ61306.1| predicted protein [Clostridiales bacterium 1_7_47FAA]
          Length = 324

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 107/254 (42%), Gaps = 24/254 (9%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +I+GN    L  L   S+D I  D PY L+              ++      F+S++ + 
Sbjct: 85  LIQGNGRD-LSFLEDNSIDAIITDHPYLLKK-------------SLKGGNRDFASYDLF- 129

Query: 83  AFTRAWLLACRRVLKPNGTLWVI------GSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            +T+  L    RVLK    L          +Y  ++++  M +   F     + WRK   
Sbjct: 130 QYTQQDLDEKFRVLKKGHFLVEFLPEENGDNYEYLYQVKAMAKESGFEYYAKVAWRKGTI 189

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           + N  GR+ +N  + L+++    +        D  +   +     +  ++P     + + 
Sbjct: 190 VAN-TGRKAKNTEDILLFSKGRARDMRPDAKKDKAEPEMKHYMSGAKGMLPTAFDIQPIS 248

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
             D  ++H ++KP  LL +IL   T   +++LD + GS      A +  R  I IE+ Q+
Sbjct: 249 KAD--RVHQSEKPVELLKQILEFVTDKKELVLDQYAGSFALAEAALESERDSISIEISQE 306

Query: 257 YIDIATKRIASVQP 270
           Y +   KRI +V+ 
Sbjct: 307 YFEEGKKRIENVKK 320


>gi|15611696|ref|NP_223347.1| putative type II DNA modification enzyme (methyltransferase)
           [Helicobacter pylori J99]
 gi|4155180|gb|AAD06206.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
           [Helicobacter pylori J99]
          Length = 404

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 60/269 (22%), Positives = 101/269 (37%), Gaps = 46/269 (17%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K  ++ G++   L K+   SV+LIF  PPY    N ++Y                + +++
Sbjct: 143 KPSLLVGDNAQTLNKIAPSSVNLIFTSPPY---YNARIYS--------------DYKNYK 185

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGS---------------YHNIFRIGTMLQNLNFW 124
            Y +     L AC RVL+    + +  S               Y   F    +L +  F+
Sbjct: 186 DYLSAMSQSLKACFRVLEEGRFIIINVSPIITKRAGREFESVRYPIHFDFHQILIDNGFY 245

Query: 125 ILNDIVWRKSNPMPNFR-----------GRRFQNAHETLIWASPSPKA---KGYTFNYDA 170
            +++I+W K +     R           G +     E+L+           K        
Sbjct: 246 FVDEILWIKPDFSVPNRIGGYLQNKKPLGYKPNCVSESLLVYRKKAPFLLDKNIKIAEKR 305

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
           LK   ++  +     +PI + +         K HP   PE+L  R+L   +   +++ DP
Sbjct: 306 LKPIKQNHTLFGKKELPIETTNCWYITPKSSKDHPAVFPESLCERVLNYYSFENEVVCDP 365

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           F GSGT G VAK + R  +  E    Y  
Sbjct: 366 FAGSGTFGMVAKSMGRIPLLCEQHPKYAQ 394


>gi|86136192|ref|ZP_01054771.1| DNA methylase N-4/N-6 [Roseobacter sp. MED193]
 gi|85827066|gb|EAQ47262.1| DNA methylase N-4/N-6 [Roseobacter sp. MED193]
          Length = 410

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 54/281 (19%), Positives = 101/281 (35%), Gaps = 50/281 (17%)

Query: 20  KDKIIKGNS---------ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
           K +++ G++         +  +  L      L+  DPPY ++ +        +     T 
Sbjct: 164 KHRLLCGDATVATDVGRVLDGVTPL------LMVTDPPYGVEYDPSWRNDTGAAKTKRTG 217

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
                   +    +  AW       L P    +V     +   +   L+   F I + I+
Sbjct: 218 K----VLNDDRADWREAW------ALFPGDVAYVWHGALHATTVADSLEVSGFNIRSQII 267

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W K   + +     +Q  HE  ++A        +            D +  + W I    
Sbjct: 268 WAKDRLILSRGDYHWQ--HEPCLYAVKKTGKGHW----------AGDRKQTTLWQIA--- 312

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
                +++D + +H TQKP   + R +++++ PG  + +PF GSGT+   A    R   G
Sbjct: 313 ----NKDQDADTVHGTQKPVECMRRPILNNSSPGQAVYEPFMGSGTTLIAAATTGRVCYG 368

Query: 251 IEMKQDYIDIATKRIAS------VQPLGNIELTVLTGKRTE 285
           IE+   Y+D+A  R         +   G      L  +R  
Sbjct: 369 IELNPAYVDVAVARWQKFTGKQAILEGGEQSFDALKSEREA 409


>gi|167747634|ref|ZP_02419761.1| hypothetical protein ANACAC_02355 [Anaerostipes caccae DSM 14662]
 gi|167652996|gb|EDR97125.1| hypothetical protein ANACAC_02355 [Anaerostipes caccae DSM 14662]
          Length = 322

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 107/254 (42%), Gaps = 24/254 (9%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +I+GN    L  L   S+D I  D PY L+              ++      F+S++ + 
Sbjct: 83  LIQGNGRD-LSFLEDNSIDAIITDHPYLLKK-------------SLKGGNRDFASYDLF- 127

Query: 83  AFTRAWLLACRRVLKPNGTLWVI------GSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            +T+  L    RVLK    L          +Y  ++++  M +   F     + WRK   
Sbjct: 128 QYTQQDLDEKFRVLKKGHFLVEFLPEENGDNYEYLYQVKAMAKESGFEYYAKVAWRKGTI 187

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           + N  GR+ +N  + L+++    +        D  +   +     +  ++P     + + 
Sbjct: 188 VAN-TGRKAKNTEDILLFSKGRARDMRPDAKKDKAEPEMKHYMSGAKGMLPTAFDIQPIS 246

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
             D  ++H ++KP  LL +IL   T   +++LD + GS      A +  R  I IE+ Q+
Sbjct: 247 KAD--RVHQSEKPVELLKQILEFVTDKKELVLDQYAGSFALAEAALESERDSISIEISQE 304

Query: 257 YIDIATKRIASVQP 270
           Y +   KRI +V+ 
Sbjct: 305 YFEEGKKRIENVKK 318


>gi|300937905|ref|ZP_07152695.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 21-1]
 gi|300457086|gb|EFK20579.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 21-1]
          Length = 177

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 88/222 (39%), Gaps = 53/222 (23%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R  +  +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +  +P P   G+ +                             
Sbjct: 108 VGYRHECAYILAKGRPRLPQNPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGST 177


>gi|308183476|ref|YP_003927603.1| type IIS restriction enzyme M2 protein (mod) [Helicobacter pylori
           PeCan4]
 gi|308065661|gb|ADO07553.1| type IIS restriction enzyme M2 protein (mod) [Helicobacter pylori
           PeCan4]
          Length = 287

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 113/290 (38%), Gaps = 46/290 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNL--QLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +K+   +S + + ++   SVDLI   PPY           +        V D W      
Sbjct: 4   NKVFYHSSTN-MNEVLDNSVDLIITSPPYFNIKDYTKNGTQDLQHSAQHVEDLWALEKYE 62

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVI-----------GSYHNIFRIGT-------MLQN 120
           +      + WL  C R LKPNG L +             +++N             +L +
Sbjct: 63  DYLLGLLKVWL-ECYRALKPNGKLCINVPLMPMLKKVLNTHYNRHIFDLHADIQHSILHD 121

Query: 121 LN--------FWILNDIVWRKSNP--------MPNFRGRRFQNAHETLIWASPSPKAKGY 164
           LN         ++L+  +W+++NP         P  R    QN  E +       K K  
Sbjct: 122 LNNTLENKPKMFLLDVYIWKRANPTKGLMFGSYPYPRNFYAQNTIEFIGVFVKDGKPKQP 181

Query: 165 TFNYDALKAANEDVQ---MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
           T          ++      +  W IPI + ++    K     H    P  L  R++   +
Sbjct: 182 TKEQKEQSQLTQEEWVEFTKQIWEIPIPNKNDIAFGK-----HAALMPAELARRLIRLYS 236

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
             GD++LDPF G GT+   AK L+R+FIG E+ ++Y  +  +++ ++   
Sbjct: 237 CVGDVVLDPFSGIGTTLREAKFLKRNFIGYELYENYKPLIEQKLGNLFDF 286


>gi|261879519|ref|ZP_06005946.1| DNA (cytosine-5-)-methyltransferase [Prevotella bergensis DSM
           17361]
 gi|270333836|gb|EFA44622.1| DNA (cytosine-5-)-methyltransferase [Prevotella bergensis DSM
           17361]
          Length = 350

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 59/262 (22%), Positives = 107/262 (40%), Gaps = 27/262 (10%)

Query: 32  LEKLPAKSVDLIFADPPYNL--QLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
           + ++  KSVDL+   PPY +    +  L + + ++++ + +  +K  +FE          
Sbjct: 1   MMQIEDKSVDLVVTSPPYPMIEMWDEILGKQNPNILECLENEPEK--AFEMMHQELDKVW 58

Query: 90  LACRRVLKPNGTLW-VIGS-----------YHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
               RV+KP G L   IG            Y+N  RI     +  F  L +I+WRK    
Sbjct: 59  KESFRVIKPGGFLCINIGDATRTINGKFALYNNHSRITKACIDFGFVGLPNIIWRKQTNA 118

Query: 138 PN--------FRGRRFQNAHETL-IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
           PN          G      HE + I+     +         A   ++   + R+ W   +
Sbjct: 119 PNKFMGSGMLPCGAYVTLEHEWILIFRKGDKRIFKSANEKLARMKSSFFWEERNVWFSDV 178

Query: 189 C--SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
               G+++   K   +      P  +  R++   ++ GD+ILDPF G+GT+   A    R
Sbjct: 179 WDIKGTKQNLQKSKTRERSAAFPFEIPYRLINMFSQKGDMILDPFLGTGTTMQAAIVCGR 238

Query: 247 SFIGIEMKQDYIDIATKRIASV 268
           +  G E+  ++  I  + I ++
Sbjct: 239 NSCGYEIDANFEQIIREGINNL 260


>gi|261838076|gb|ACX97842.1| type II m4C methyltransferase [Helicobacter pylori 51]
 gi|317177507|dbj|BAJ55296.1| putative type II cytosine specific methyltransferase [Helicobacter
           pylori F16]
          Length = 404

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/269 (21%), Positives = 101/269 (37%), Gaps = 46/269 (17%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K  ++ G++   L K+   S++LIF  PPY    N ++Y                + +++
Sbjct: 143 KPSLLIGDNAQTLNKIVPNSINLIFTSPPY---YNARIYS--------------DYKNYK 185

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGS---------------YHNIFRIGTMLQNLNFW 124
            Y       L AC RVL+    + +  S               Y   F    +L +  F+
Sbjct: 186 DYLNAMSQSLKACFRVLEEGRFIIINVSPVITKRAGREFESVRYPIHFDFHQILIDNGFY 245

Query: 125 ILNDIVWRKSNPMPNFR-----------GRRFQNAHETLIWASPSPKA---KGYTFNYDA 170
            +++I+W K +     R           G +     E+L+           K        
Sbjct: 246 FVDEILWIKPDFSVPNRIGGYLQNKKPLGYKPNCVSESLLVYRKKAPFLLDKNIKIAEKR 305

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
           LK + ++  +     +PI + +         K HP   PE+L  R+L   +   +++ DP
Sbjct: 306 LKPSKQNNTLFGKKELPIETTNCWYITPKSSKDHPAVFPESLCERVLNYYSFENEVVCDP 365

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           F GSGT G VAK + R  +  E    Y  
Sbjct: 366 FAGSGTFGMVAKSMGRIPLLCEQHPKYAQ 394


>gi|313885775|ref|ZP_07819522.1| DNA (cytosine-5-)-methyltransferase [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619002|gb|EFR30444.1| DNA (cytosine-5-)-methyltransferase [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 404

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 68/290 (23%), Positives = 120/290 (41%), Gaps = 63/290 (21%)

Query: 24  IKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KGN++  L  L  K    V LI+ DPP+N               +  +  ++ + +   
Sbjct: 1   MKGNNLLALHSLKEKYAGKVKLIYIDPPFNT--------------EGDSFEYNDYFNHST 46

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMP 138
           +  F +  L     +L  +G +++   ++ +  +  +   +      LN+I+W       
Sbjct: 47  WLTFMKNRLEIAHTLLDSDGLIYIHLDFNEVHYLKILADEIFGRKNFLNEIIWCYQE--R 104

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
               R F   H+++++ +   +   YTFN + ++    +V ++    +       RLR K
Sbjct: 105 ETSKRFFNRKHDSILFYAKDKETD-YTFNNELIREKYSEVTLKKFKYLDSEGRKYRLRTK 163

Query: 199 DGEK---------------------------------------LHPTQKPEALLSRILVS 219
           DG+                                           TQKPE L+ + +++
Sbjct: 164 DGKSDPAQEDDNTYRQYLDAQSGPLPRDWFMIPFLNQASSERVGFNTQKPEELIKKFILA 223

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI-DIATKRIASV 268
            +  GDIILD F GSGT+ +VA KL R +IGIE + DYI DI   R+  V
Sbjct: 224 GSNEGDIILDFFAGSGTTLSVAHKLNRKYIGIE-QMDYIKDITVPRLFDV 272


>gi|260588283|ref|ZP_05854196.1| DNA (cytosine-5-)-methyltransferase [Blautia hansenii DSM 20583]
 gi|260541421|gb|EEX21990.1| DNA (cytosine-5-)-methyltransferase [Blautia hansenii DSM 20583]
          Length = 259

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 87/269 (32%), Gaps = 49/269 (18%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +   + I  L  LP  SVD++  DPPY    N                 WD         
Sbjct: 16  LFLMDGIEGLRSLPKHSVDMLLTDPPYGTTRNY----------------WDVPLP----- 54

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
                   A +  +KPNG +              +  +    +  + +W K         
Sbjct: 55  --LPELWEAVKWAVKPNGAVLFFA---QCPFDKVLGASNLAMLRYEWIWYKERGTGFLNA 109

Query: 143 RRF--QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            R   + +   L++   SP      +N                         ER  ++  
Sbjct: 110 NRAPLKKSENILVFYQKSP-----VYNPQFTYGKPYTRVHSRSGTSSNYGKFERQGSESN 164

Query: 201 EK----------------LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           +                 +HPTQKP  L   ++ + T+PG+++ D   GSGT+   A   
Sbjct: 165 DGRRYPGNVLFVPTVSGGIHPTQKPVELCEYLIRTYTRPGELVADICAGSGTTAIAAINT 224

Query: 245 RRSFIGIEMKQDYIDIATKRIASVQPLGN 273
            R F+  E    +   A++RI + Q + +
Sbjct: 225 ERRFVCFETAPSFYAAASERIRAAQAVKS 253


>gi|255012035|ref|ZP_05284161.1| MthZ [Bacteroides fragilis 3_1_12]
 gi|313149875|ref|ZP_07812068.1| DNA methylase [Bacteroides fragilis 3_1_12]
 gi|311977222|gb|ADQ20483.1| M1.BfaI [Bacteroides fragilis]
 gi|313138642|gb|EFR56002.1| DNA methylase [Bacteroides fragilis 3_1_12]
          Length = 364

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/267 (20%), Positives = 103/267 (38%), Gaps = 25/267 (9%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           ++   +      ++DL+   PPY  +++  ++    +  +    +S  + + FE      
Sbjct: 10  DASQHMTSTEDNTIDLVVTSPPYPMIEMWDEIMAKQNPEITDNLESNPEMA-FELMHREL 68

Query: 86  RAWLLACRRVLKPNGTLW------------VIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                 C RVLK  G L                 Y+N  RI      + F  L +I+WRK
Sbjct: 69  DKVWKECFRVLKVGGFLCVNIGDATRTINDNFTLYNNHSRISKACIEIGFVGLPNIIWRK 128

Query: 134 SNPMPN--------FRGRRFQNAHETL-IWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
              +PN          G      HE + I+   S +             ++   + R+ W
Sbjct: 129 QTNVPNKFMGSGMLPCGAYVTLEHEWILIFRKGSKREYKKADAKLNRMKSSFFWEERNVW 188

Query: 185 LIPIC--SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
              +    G+++   K   +      P  +  R++   ++ GD ++DPF G+GT+   A 
Sbjct: 189 FSDVWEIKGTKQKIQKKTSRERSAAYPFEVPYRLINMFSQKGDTVMDPFLGTGTTTQAAM 248

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQ 269
            L R+  G E+  ++  I  + I S++
Sbjct: 249 LLGRNSCGYEIDPNFETIIRESIDSLK 275


>gi|330507788|ref|YP_004384216.1| DNA methylase [Methanosaeta concilii GP-6]
 gi|328928596|gb|AEB68398.1| DNA methylase [Methanosaeta concilii GP-6]
          Length = 312

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 63/291 (21%), Positives = 112/291 (38%), Gaps = 62/291 (21%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
              +S+ V++ +P  SV+LI   PPY L     +Y+ ++  VDA            AY  
Sbjct: 36  YLADSLEVMKNMPESSVNLIVTSPPYAL-----VYKKEYGNVDAN-----------AYVK 79

Query: 84  FTRAWLLACRRVLKPNGTLWVI--GSY------HNIFRIGTMLQ-NLNFWILNDIVWRKS 134
           +   +     RVL  +G+L +   GS+       + ++   +++    F +  +  W   
Sbjct: 80  WFMDFADQFLRVLTEDGSLVINIGGSWNRGKPTRSTYQFELIIELAKKFHLAQEFYWYNP 139

Query: 135 NPMPNF------RGRRFQNAHETLIWASPSPKAK--------GYTFNYDALKAANEDVQM 180
             +P        R  R +++ E ++W S SP  K         Y+ +   L       + 
Sbjct: 140 AKLPAPAEWVTVRRIRVKDSVELVLWLSKSPFPKADNRKILQPYSKDMQRLIERGYVAKK 199

Query: 181 R-----------------------SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
           R                               S   +   +   K HP + P+ L    +
Sbjct: 200 RPSGHNITSKFQRDNKGAIPPNLLQVGNNDANSPYLQKCKESNMKPHPARFPKELPQLFI 259

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
              T  GD+++DPF GS  +G VA+  +R +IGIE  +DY+  +  R   +
Sbjct: 260 DFLTDQGDVVMDPFCGSNMTGIVAETRKRRWIGIESIEDYLKASEFRFPHI 310


>gi|317009298|gb|ADU79878.1| putative type II cytosine specific methyltransferase [Helicobacter
           pylori India7]
          Length = 404

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/269 (21%), Positives = 101/269 (37%), Gaps = 46/269 (17%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K  ++ G++   L K+   S++LIF  PPY    N ++Y                + +++
Sbjct: 143 KPSLLIGDNAQTLNKIVPNSINLIFTSPPY---YNARIYS--------------DYKNYK 185

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGS---------------YHNIFRIGTMLQNLNFW 124
            Y       L AC RVL+    + +  S               Y   F    +L +  F+
Sbjct: 186 DYLNAMSQSLKACFRVLEEGRFIIINVSPVITKRAGREFESVRYPIHFDFHQILIDNGFY 245

Query: 125 ILNDIVWRKSNPMPNFR-----------GRRFQNAHETLIWASPSPKA---KGYTFNYDA 170
            +++I+W K +     R           G +     E+L+           K        
Sbjct: 246 FVDEILWIKPDFSVPNRIGGYLQNKKPLGYKPNCVSESLLVYRKKAPFLLDKNIKIAEKR 305

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
           LK + ++  +     +PI + +         K HP   PE+L  R+L   +   +++ DP
Sbjct: 306 LKPSKQNNTLFGKKELPIETTNCWYITPKSSKDHPAVFPESLCERVLNYYSFENEVVCDP 365

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           F GSGT G VAK + R  +  E    Y  
Sbjct: 366 FAGSGTFGMVAKSMGRIPLLCEQHPKYAQ 394


>gi|332829798|gb|EGK02440.1| hypothetical protein HMPREF9455_01397 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 473

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 57/278 (20%), Positives = 95/278 (34%), Gaps = 44/278 (15%)

Query: 21  DKIIKGNSISVL---EKLPAKSVDLIFADPPYNL---QLNGQLYRPDHSLVDAVTDSWDK 74
            ++I G+S  V      +  +   ++F DPPYNL   Q +G       +    V +    
Sbjct: 174 HRLICGDSTDVNVIGRLMAGQYAHMVFTDPPYNLAPEQFSGFGKNEAQTFAMGVGE---- 229

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
             S E +  F +   L   R        +V   + ++  I      +     N IVW K+
Sbjct: 230 -MSEEQFTEFLKKCFLVLIRHSVKGSIHYVCMDWKHVLEIRAA-GKVYSEYKNMIVWNKT 287

Query: 135 NPMPNFRGRRFQNAHETLIWASPSP----------------------------KAKGYTF 166
           N      G  +++ HE +     +                                G   
Sbjct: 288 NGG---MGSFYRSKHELIFMFQNNQDLPEEILDARITDIEQTGYEAHHELIFVFKNGRER 344

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
           N +            + W  P  S   +  +    K HPT KP  L++  ++  +  G I
Sbjct: 345 NVNNFMLGQTGRYRTNVWDYPGASSFNKTADVS-TKDHPTPKPVKLVADAIMDCSLIGHI 403

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           ILD F GSGT+   A +  R     ++   Y D+  +R
Sbjct: 404 ILDIFSGSGTTIIAADQTERVAYVADLGPGYCDLNVRR 441


>gi|162457644|ref|YP_001620011.1| DNA methyltransferase [Sorangium cellulosum 'So ce 56']
 gi|161168226|emb|CAN99531.1| DNA methyltransferase [Sorangium cellulosum 'So ce 56']
          Length = 312

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 62/285 (21%), Positives = 105/285 (36%), Gaps = 46/285 (16%)

Query: 25  KGNSISVLEKLPAK-SVDLIFADPPYNLQLN-----GQLYRPDHSLVDAVTDSWDKFSSF 78
            G++  V   LPA    DL++ DPP+ +         +         ++  D++D  +S 
Sbjct: 7   HGDAADVCAALPADVRFDLVYLDPPFGVGTTMTARAARGQARGRRRPESGPDAYDDRASA 66

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNP 136
           +A  A     L A R  +    TL++   +  +         L      L +I+W   N 
Sbjct: 67  DALVAMLAPRLEAIRDRMTEGATLYLHLDHRAVHDAKVACDRLFGRGAFLGEIIWAPGNG 126

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKG--------------YTFNYDALKAANEDVQMRS 182
               RG      H+T++  + +   +G              Y     A+   + D   R 
Sbjct: 127 GRGARGFSVT--HQTILLYARAASERGQVVYNAADPTLREPYAETSLAMHFKHRDEDGRL 184

Query: 183 DWLIPICSGSERLRNKDGEKL----------------------HPTQKPEALLSRILVSS 220
                +   + R    +G +L                      +PTQKPE LL RI+ +S
Sbjct: 185 YRERILGGKAYRYYADEGRRLGSVWSDIPGMVANTPLRREATGYPTQKPERLLERIVRAS 244

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           + PG  + D   GSGT+   A +L R F+G +        A +R+
Sbjct: 245 SAPGATVADLMCGSGTTLVAAARLGRRFVGGDRSPLAFATARERL 289


>gi|224372986|ref|YP_002607358.1| DNA methylase [Nautilia profundicola AmH]
 gi|223590019|gb|ACM93755.1| DNA methylase [Nautilia profundicola AmH]
          Length = 352

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/266 (20%), Positives = 102/266 (38%), Gaps = 26/266 (9%)

Query: 34  KLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLAC 92
           ++  +S+D I   PPY  +++  + +   +  +    +  +   ++E            C
Sbjct: 16  QINNESIDFILTSPPYPMIEMWDETFFKLNQEIKNQFNKKNYRLAYELMHNELNKTWKEC 75

Query: 93  RRVLKPNGTL-WVIGS-----------YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN- 139
            RVLKP G +   IG            + N  +I   +QNL    L  I+WRK++  PN 
Sbjct: 76  YRVLKPGGIIAINIGDATRTLNKNFQLFTNHVKIIEYMQNLGMQSLPPIIWRKTSNKPNK 135

Query: 140 -------FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS-- 190
                           HE ++      K K         + +    + R+ W   I    
Sbjct: 136 FMGSGMLPVNAYVTLEHEYILIFRKGEKRKFNKNEIIRRRKSAFFWEERNKWFSDIWKDI 195

Query: 191 -GSERLRNK--DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
            G  +  +K     +      P  L  R++   +   D + DPF G+GT+   +  L R+
Sbjct: 196 VGENQTIDKYYKTNRDRNAAFPLELSLRLIHMFSIYEDTVFDPFLGTGTTTIASAVLGRN 255

Query: 248 FIGIEMKQDYIDIATKRIASVQPLGN 273
            IG E+   + ++  +RI +++ +  
Sbjct: 256 SIGYEIDTSFKNLIKERINNIKTITE 281


>gi|261839489|gb|ACX99254.1| Modification methylase CfrBI [Helicobacter pylori 52]
          Length = 404

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/269 (21%), Positives = 102/269 (37%), Gaps = 46/269 (17%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K  ++ G++   L K+   S++LIF  PPY    N ++Y                + +++
Sbjct: 143 KPSLLIGDNAQTLNKIVPNSINLIFTSPPY---YNARIYS--------------DYKNYK 185

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGS---------------YHNIFRIGTMLQNLNFW 124
            Y       L AC RVL+    + +  S               Y   F    +L +  F+
Sbjct: 186 DYLNAMSQSLKACFRVLEEGRFIIINVSPVITKRAGREFESVRYPIHFDFHQILIDNGFY 245

Query: 125 ILNDIVWRKSNPMPNFR-----------GRRFQNAHETLIWASPSPKA---KGYTFNYDA 170
            +++I+W K +     R           G +     E+L+           K        
Sbjct: 246 FVDEILWIKPDFSVPNRIGGYLQNKKPLGYKPNCVSESLLVYRKKAPFLLDKNIKIAEKR 305

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
           LK++ ++  +     +PI + +         K HP   PE+L  R+L   +   +++ DP
Sbjct: 306 LKSSKQNNTLFGKKELPIETTNCWYITPKSSKDHPAVFPESLCERVLNYYSFENEVVCDP 365

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           F GSGT G VAK + R  +  E    Y  
Sbjct: 366 FAGSGTFGMVAKSMGRIPLLCEQHPKYAQ 394


>gi|218885335|ref|YP_002434656.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756289|gb|ACL07188.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 399

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/315 (21%), Positives = 112/315 (35%), Gaps = 57/315 (18%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
           ++   + +N   I     ++++G+++  +     KSV+ +    PY     G     D  
Sbjct: 83  RSKNGVKKNNAGIANVPFELVEGDALEKIRSFSDKSVNCVVTSTPY----WGLRLYKDSF 138

Query: 64  LVDAVTDSWDKFSSFEAYDAFTR---AWLLACRRVLKPNGTLW-VIGSYHN--------- 110
            V         F   +  ++F R     L A   VL  +G++W  I    N         
Sbjct: 139 FVRWGDGELCPFGHEQTPESFIRHSVEVLSALYNVLTDDGSVWWNIMDSFNTRTQIRGSS 198

Query: 111 --------------------------------------IFRIGTMLQNLNFWILNDIVWR 132
                                                   RI      + +++   I W 
Sbjct: 199 AEALQAMQGKDSRGWADHACRRYSAGHSYLKDGEQCMIPSRIAERASRVGYYVKAVITWA 258

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           K++ +P  +  R     E ++  +     K     Y +L +A       S+      S  
Sbjct: 259 KTSSLPEPQTSRVSRNLEYVLHLTKVRTPKFDKEVYRSLPSALGGRNNGSE--TDKLSDV 316

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
             L   +G   H  Q P AL +R +  +T   D++LDPF G+G S   A  L+R FIGI+
Sbjct: 317 WVLPTSNGRHGHGAQFPVALPARCIALATNANDLVLDPFVGAGNSAIAALALKRKFIGID 376

Query: 253 MKQDYIDIATKRIAS 267
              +YID+A KRI  
Sbjct: 377 TSSEYIDVAKKRIKE 391


>gi|108563097|ref|YP_627413.1| putative type II cytosine specific methyltransferase [Helicobacter
           pylori HPAG1]
 gi|107836870|gb|ABF84739.1| putative type II cytosine specific methyltransferase [Helicobacter
           pylori HPAG1]
          Length = 404

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/269 (21%), Positives = 101/269 (37%), Gaps = 46/269 (17%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K  ++ G++   L K+   S++LIF  PPY    N ++Y                + +++
Sbjct: 143 KPSLLIGDNAQTLNKIVPNSINLIFTSPPY---YNARIYS--------------DYKNYK 185

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGS---------------YHNIFRIGTMLQNLNFW 124
            Y       L AC RVL+    + +  S               Y   F    +L +  F+
Sbjct: 186 DYLNAMSQSLKACFRVLEEGRFIIINVSPVITKRAGREFESVRYPIHFDFHQILIDNGFY 245

Query: 125 ILNDIVWRKSNPMPNFR-----------GRRFQNAHETLIWASPSPKA---KGYTFNYDA 170
            +++I+W K +     R           G +     E+L+           K        
Sbjct: 246 FVDEILWIKPDFSVPNRIGGYLQNKKPLGYKPNCVSESLLVYRKKAPFLLDKNIKIAEKR 305

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
           LK + ++  +     +PI + +         K HP   PE+L  R+L   +   +++ DP
Sbjct: 306 LKPSKQNNTLFGKKELPIETTNCWYITPKSSKDHPAVFPESLCERVLNYYSFENEVVCDP 365

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           F GSGT G VAK + R  +  E    Y  
Sbjct: 366 FAGSGTFGMVAKSMGRIPLLCEQHPKYAQ 394


>gi|297379884|gb|ADI34771.1| Modification methylase [Helicobacter pylori v225d]
          Length = 404

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 60/269 (22%), Positives = 101/269 (37%), Gaps = 46/269 (17%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K  ++ G++   L K+   S++LIF  PPY    N ++Y                + +++
Sbjct: 143 KPSLLIGDNAQTLNKIVPNSINLIFTSPPY---YNARIYS--------------DYKNYK 185

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGS---------------YHNIFRIGTMLQNLNFW 124
            Y       L AC RVL+    + +  S               Y   F    +L +  F+
Sbjct: 186 DYLNTMSQSLKACFRVLEEGRFIIINVSPVITKRAGREFESVRYPIHFDFHQILIDNGFY 245

Query: 125 ILNDIVWRKSNPMPNFR-----------GRRFQNAHETLIWASPSPKA---KGYTFNYDA 170
            +++I+W K +     R           G +     E+L+           K        
Sbjct: 246 FVDEILWIKPDFSVPNRIGGYLQNKKPLGYKPNCVSESLLVYRKKAPFLLDKNIKIAEKR 305

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
           LK + ++  +     +PI + +         K HP   PE+L  R+L   +   +I+ DP
Sbjct: 306 LKPSKQNNTLFGKKELPIETTNCWYITPKSSKDHPAVFPESLCERVLNYYSFENEIVCDP 365

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           F GSGT G VAK + R  +  E    Y  
Sbjct: 366 FAGSGTFGMVAKSMGRIPLLCEQHPKYAQ 394


>gi|228941076|ref|ZP_04103633.1| DNA methylase N-4/N-6 [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228974008|ref|ZP_04134582.1| DNA methylase N-4/N-6 [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228980596|ref|ZP_04140905.1| DNA methylase N-4/N-6 [Bacillus thuringiensis Bt407]
 gi|228779157|gb|EEM27415.1| DNA methylase N-4/N-6 [Bacillus thuringiensis Bt407]
 gi|228785734|gb|EEM33739.1| DNA methylase N-4/N-6 [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228818619|gb|EEM64687.1| DNA methylase N-4/N-6 [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 301

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 63/308 (20%), Positives = 102/308 (33%), Gaps = 95/308 (30%)

Query: 43  IFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL 102
           +   PPY    +             V       ++ E Y +   +     +RVLK +GTL
Sbjct: 1   MVTSPPYWGLRDY-----------GVDGQIGLEATVEEYVSNLVSVFREVKRVLKDDGTL 49

Query: 103 WVIGSYHN-----------------------------------------------IFRIG 115
           W+                                                      +R+ 
Sbjct: 50  WLNLGDVYAGSGRGRNADGKGNPGNNHFQSVGQVTGIVSITKSVDGLKPKDLIGLPWRVA 109

Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA----- 170
             LQ   +++  DIVW K N MP     R   +HE +   S SP    Y +++++     
Sbjct: 110 FALQQDGWYLRQDIVWNKPNAMPESVRDRPTKSHEYIFLLSKSP---KYYYDHESIKEPA 166

Query: 171 -----------------------------LKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
                                                  R+            +  K  +
Sbjct: 167 VYGQQDVRGSEGAFGPPQRAKRTSKEKGSFNGKYGHEAFRAIRDKRNKRSVWTVATKPLK 226

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           + H    PEAL+   +++      I++DPFFGSGT G VA K  R+FIGIE+   YI+I+
Sbjct: 227 EAHFATFPEALIEPCILAGAPAEGIVMDPFFGSGTVGRVAAKHNRNFIGIELNPGYIEIS 286

Query: 262 TKRIASVQ 269
            + +++VQ
Sbjct: 287 DRLLSNVQ 294


>gi|108563753|ref|YP_628069.1| putative type III restriction enzyme M protein [Helicobacter pylori
           HPAG1]
 gi|107837526|gb|ABF85395.1| putative type III restriction enzyme M protein [Helicobacter pylori
           HPAG1]
          Length = 569

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 71/301 (23%), Positives = 118/301 (39%), Gaps = 67/301 (22%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            + +IKGN++  L  L    AK V  I+ DPPYN   +   Y              D F 
Sbjct: 164 TNYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNY-------------NDNF- 209

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKS 134
           +  ++  F +  L   R  L  +G++++   Y+ +     ++  +        +I+WR  
Sbjct: 210 NHSSWLVFMKNRLEVAREFLSDDGSIYINLDYNEVHYCKVLMDEIFGVENFQREIIWRIG 269

Query: 135 NPMPNFRG-RRFQNAHETLIWASPSPKAKGYTFNYDALKAA------------------- 174
                      F   H+T+++ S +     +   Y   K                     
Sbjct: 270 WLSGYKTSINNFIRNHDTILFYSKNADKLFFNKKYIENKDFKELIKIEKIQSNLDNLGID 329

Query: 175 -----------NEDVQMRSDWLIPICSGSER---------------LRNKDGEKLHPTQK 208
                      N + + +   L  I +G+E                +    G +    QK
Sbjct: 330 REKQKNIIKIINHETRPKRYPLEDIWNGNEYDDLNSIAIVSYSGETVSKMLGTEEIKGQK 389

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRIAS 267
            E L+ RIL +ST   D++LD F GSGT+ AVA K++R +IGIE + DYI+ I  +R+  
Sbjct: 390 SEKLIQRILEASTNENDLVLDFFAGSGTTCAVAHKMKRRYIGIE-QMDYIETITKERLKK 448

Query: 268 V 268
           V
Sbjct: 449 V 449


>gi|304383947|ref|ZP_07366404.1| DNA (cytosine-5-)-methyltransferase domain protein [Prevotella
           marshii DSM 16973]
 gi|304335025|gb|EFM01298.1| DNA (cytosine-5-)-methyltransferase domain protein [Prevotella
           marshii DSM 16973]
          Length = 648

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 68/382 (17%), Positives = 132/382 (34%), Gaps = 85/382 (22%)

Query: 21  DKIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLY---RPDHSLVDAVT------ 69
           + +++G  +S    L  K   VDL++ DPP+    +       R +  + +A+       
Sbjct: 63  NLVLRGECLSACAYLKEKGMKVDLVYIDPPFASGADYAKKVYIRRNPKVAEAIKQAETEI 122

Query: 70  --------------DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
                         D WDK    E Y  +    L+A + V+    +++V   +H    + 
Sbjct: 123 DNEDLRNFEEKMYGDVWDK----ERYLNWMYENLVAIKAVMSDTASIYVHLDWHIGHYVK 178

Query: 116 TMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP---------------- 157
            ++  +       N+IVW     +       F   H+T+   S                 
Sbjct: 179 ILMDEIFGEDKFRNEIVWHYPGGIKAIPT-YFPRKHDTIYVYSKGDIVTYNVQRKSIQEN 237

Query: 158 --SPKAKGYTFNYDALKAANEDVQMRSDWLI----------------------------P 187
               +   Y+ + +A+   N   + +  + +                             
Sbjct: 238 SLYNRWIKYSEDGEAITYRNFPRKDKVKFEMYVNRFISQNGRKPQENDELYRFEGAMIDD 297

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           + S    +     +  + TQKPEALL RI+ +S+  G ++ D F GSG + AVA +L R 
Sbjct: 298 VWSDCPAVFRSSEDINYSTQKPEALLERIIKASSNEGMLVADFFGGSGVTAAVANRLGRK 357

Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTN 307
           FI  ++  + I+    R+         E+  +    +  R     + +   + PG    +
Sbjct: 358 FIHCDIGINSIETTRDRLRKA--GAEFEVMEIKDGVSLYRNPVQTMDKLKSLIPGLRNED 415

Query: 308 AQGNISATVCADGTLISGTELG 329
           A          +G++    E  
Sbjct: 416 ALDKFW-----EGSIYDTKEGM 432


>gi|188527466|ref|YP_001910153.1| putative type II cytosine specific methyltransferase [Helicobacter
           pylori Shi470]
 gi|188143706|gb|ACD48123.1| putative type II cytosine specific methyltransferase [Helicobacter
           pylori Shi470]
 gi|308062014|gb|ADO03902.1| putative type II cytosine specific methyltransferase [Helicobacter
           pylori Cuz20]
          Length = 404

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/269 (21%), Positives = 101/269 (37%), Gaps = 46/269 (17%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K  ++ G++   L K+   S++LIF  PPY    N ++Y                + +++
Sbjct: 143 KPSLLIGDNAQTLNKIVPNSINLIFTSPPY---YNARIYS--------------DYKNYK 185

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGS---------------YHNIFRIGTMLQNLNFW 124
            Y       L AC RVL+    + +  S               Y   F    +L +  F+
Sbjct: 186 DYLNAMSQSLKACFRVLEEGRFIIINVSPVITKRAGREFESVRYPIHFDFHQILIDNGFY 245

Query: 125 ILNDIVWRKSNPMPNFR-----------GRRFQNAHETLIWASPSPKA---KGYTFNYDA 170
            +++I+W K +     R           G +     E+L+           K        
Sbjct: 246 FVDEILWIKPDFSVPNRIGGYLQNKKPLGYKPNCVSESLLVYRKKAPFLLDKNIKIAEKR 305

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
           LK + ++  +     +PI + +         K HP   PE+L  R+L   +   +++ DP
Sbjct: 306 LKPSKQNNTLFGKKELPIETTNCWYITPKSSKDHPAIFPESLCERVLNYYSFENEVVCDP 365

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           F GSGT G VAK + R  +  E    Y  
Sbjct: 366 FAGSGTFGMVAKSMGRIPLLCEQHPKYAQ 394


>gi|291562208|emb|CBL41024.1| DNA modification methylase [butyrate-producing bacterium SS3/4]
          Length = 259

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/264 (19%), Positives = 87/264 (32%), Gaps = 39/264 (14%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +   + I  L  LP  SVD++  DPPY    N                 WD         
Sbjct: 16  LFLMDGIEGLRSLPKHSVDMLLTDPPYGTTRNY----------------WDVPLP----- 54

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
                   A +  +KPNG +              +  +    +  + +W K         
Sbjct: 55  --LPELWEAVKWAVKPNGAVLFFA---QCPFDKVLGASNLAMLRYEWIWYKERGTGFLNA 109

Query: 143 RRF--QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD- 199
            R   + +   L++   SP               +      S++      GSE    +  
Sbjct: 110 NRAPLKKSENILVFYKKSPVYNPQFTYGKPYARVHSRSGTSSNYGKFERQGSESNDGRRY 169

Query: 200 ----------GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
                        +HPTQKP  L   ++ + T PG+++ D   GSGT+   A    R F+
Sbjct: 170 PGNVLFVPTVSGGIHPTQKPVELCEYLIRTYTHPGELVADICVGSGTTAIAAINTERRFV 229

Query: 250 GIEMKQDYIDIATKRIASVQPLGN 273
             E    +   A++RI + Q + +
Sbjct: 230 CFETAPSFYAAASERIRAAQAVKS 253


>gi|255012034|ref|ZP_05284160.1| DNA methylase N-4/N-6 domain protein [Bacteroides fragilis 3_1_12]
 gi|313149874|ref|ZP_07812067.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides
           fragilis 3_1_12]
 gi|313138641|gb|EFR56001.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides
           fragilis 3_1_12]
          Length = 447

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 61/261 (23%), Positives = 96/261 (36%), Gaps = 46/261 (17%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF-SSFEAYDAFTRAWLL 90
           +  +  +SV LI   PPY              L D  +D    F  S+E Y         
Sbjct: 1   MSLVSNESVQLIVTSPPY------------WQLKDYGSDKQIGFNDSYEEYINNLNLVWN 48

Query: 91  ACRRVLKPNGTLW-VIGS------YHNIF-------RIGTMLQNLNFWILNDIVWRKSNP 136
            C RVL+P   L   IG       Y++ +        I    + + F  +  IVW+K   
Sbjct: 49  ECFRVLEPGCRLCINIGDQFARSVYYSRYKVIPIHSEIIRFCEEVGFDYMGSIVWQKPTS 108

Query: 137 M------------PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
           M            P  RG   +   E ++      KA          +   E  +   + 
Sbjct: 109 MHTTGGEKIMGSFPYPRGGIVKIDFEHILLFKKIGKATP------ISREKKEASKFTIEE 162

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
                S          +K H    PE L  R++   +  GD +LDPF GSGT+  VA+ L
Sbjct: 163 WNEYFSSHWTFGGARQDK-HIAVFPEELPKRLIRMFSFVGDTVLDPFMGSGTTALVARNL 221

Query: 245 RRSFIGIEMKQDYIDIATKRI 265
            R+ IG E+ ++++    +++
Sbjct: 222 NRNSIGYEINKNFLQFYKEKV 242


>gi|149924541|ref|ZP_01912899.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Plesiocystis pacifica SIR-1]
 gi|149814594|gb|EDM74176.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Plesiocystis pacifica SIR-1]
          Length = 569

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 66/283 (23%), Positives = 106/283 (37%), Gaps = 37/283 (13%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVD---------AV 68
           D +I G+++  LE L      S DLI+ DPP+       L R   S  +         A 
Sbjct: 55  DALILGDNLLALEALARDRPGSADLIYIDPPFATGSRFSLIRRVGSKREGDEAELRLPAF 114

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWIL 126
            D+W+   +           L    R+L P G+L+V         +  +L  +       
Sbjct: 115 DDAWEGGPA--GLLRMLDPRLRLLHRLLAPTGSLYVHVDPTVGHAVKLLLDEIFGPECFQ 172

Query: 127 NDIVWRKSNPMPNF-RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS--- 182
            +IVWR         + R +   H+ + +    P+A  +   Y       +    +    
Sbjct: 173 REIVWRIGWLSGFKTKARNWIRNHDLIFFYVKDPRAFTFNKRYVPHPPGYKRRDGKPSKA 232

Query: 183 -------DWLIPIC----SGSERLRNKDGEKLH------PTQKPEALLSRILVSSTKPGD 225
                   W         SG E L +   +          TQK E+LL RI+ +S+ PGD
Sbjct: 233 PGVAIEDVWNANAVEAELSGRESLDSIQIKSFSKEKTGWATQKNESLLRRIIEASSNPGD 292

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            ++D F GSGT+  VA +L R F   +  +  + I   R+   
Sbjct: 293 RVVDVFAGSGTAAVVAAELGRRFWACDRAEAAVQIGRGRLLEA 335


>gi|302344012|ref|YP_003808541.1| ParB domain protein nuclease [Desulfarculus baarsii DSM 2075]
 gi|301640625|gb|ADK85947.1| ParB domain protein nuclease [Desulfarculus baarsii DSM 2075]
          Length = 399

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 97/249 (38%), Gaps = 35/249 (14%)

Query: 20  KDKIIKGNSISV--LEKLPAKSV--DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + +++ G+S S   ++KL A  V   L+  DPPY ++ +       +  +          
Sbjct: 165 RHRLMCGDSTSADNVKKLLAG-VRPHLMVTDPPYGVEYD---PAWRNEALSGQKTKRTGV 220

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
              +    +  AW       L P    +V     +   +   L    F I + I+W K  
Sbjct: 221 VLNDDRADWREAW------ALFPGDVAYVWHGALHAATVAESLVACGFDIRSQIIWAKER 274

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            +       +   HE   +A                   N D +  + W IP        
Sbjct: 275 LV--LSRGHYHWMHEPCWYAVKGKAH------------WNGDRKQVTIWNIP-------S 313

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           + +D + +H TQKP   + R + +++ PG  + +PF GSGTS   A+   R+ + +E+  
Sbjct: 314 KGQDADTIHSTQKPVECMKRPMENNSSPGQAVYEPFSGSGTSIIAAEITGRACLAMELNP 373

Query: 256 DYIDIATKR 264
            Y+D+  KR
Sbjct: 374 AYVDVGVKR 382


>gi|209963409|ref|YP_002296324.1| DNA methylase, putative [Rhodospirillum centenum SW]
 gi|209956875|gb|ACI97511.1| DNA methylase, putative [Rhodospirillum centenum SW]
          Length = 412

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 87/247 (35%), Gaps = 31/247 (12%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +++ G++     V   L      L+  DPPY ++ +        +             +
Sbjct: 169 HRLLCGDATGASDVERLLAGARPHLMVTDPPYGVEYD----PSWRNAAGVAKTKRTGKVA 224

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            +    +  AW       L P    +V  +  +   +   L    F I   IVW KS   
Sbjct: 225 NDDRADWRDAW------ALFPGDVAYVWHAAIHATTVAESLIACGFDIRAQIVWSKSRFA 278

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                  +Q  HE   +               A           + W I    G      
Sbjct: 279 LGRGDYHWQ--HEPCWYGVRKG----------AKSHWQGARDQSTLWSIAPAGG------ 320

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           +D    H TQKP  ++ R +V+++  GD++ +PF GSGT+   A+ + R    +E+   Y
Sbjct: 321 EDAATPHGTQKPVEVMRRPIVNNSARGDVLYEPFCGSGTTLIAAETVGRVCYALELDPTY 380

Query: 258 IDIATKR 264
            D+  +R
Sbjct: 381 CDVIVRR 387


>gi|57505368|ref|ZP_00371297.1| m4C-methyltransferase, putative [Campylobacter upsaliensis RM3195]
 gi|57016504|gb|EAL53289.1| m4C-methyltransferase, putative [Campylobacter upsaliensis RM3195]
          Length = 387

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 57/260 (21%), Positives = 98/260 (37%), Gaps = 39/260 (15%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K  ++ G++ S L K+    ++ IF  PPY    N ++Y                + S++
Sbjct: 137 KPSLLIGDNRSSLNKIRDNQINFIFTSPPY---YNARIYS--------------DYVSYK 179

Query: 80  AYDAFTRAWLLACRRVLKPN---------------GTLWVIGSYHNIFRIGTMLQNLNFW 124
           AY    +  L  C R+L+                 G  +    Y   F    +L    F+
Sbjct: 180 AYLKAMQETLKQCYRILEDGRFIIINVSPVITKRAGREFESIRYPIHFDFHQILCESGFY 239

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK-----AANEDVQ 179
            +++I+W K       R   +      L +           +  ++         N D  
Sbjct: 240 FVDEILWIKPEYSVPNRVAGYLQTKMPLSYKPNCISESLMVYRKNSPFLLDKNIKNYDKN 299

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
           +R+D  +   S +    +   +K HP   PE L  R+L   +  GD++ DPF GSGT G 
Sbjct: 300 LRNDDELD--STNCWHISPKADKNHPAVFPEELCKRVLKYYSFKGDVVCDPFAGSGTFGR 357

Query: 240 VAKKLRRSFIGIEMKQDYID 259
           VA+ + R  +  E  + Y  
Sbjct: 358 VARSMGRIPLLCEANEKYAQ 377


>gi|45932|emb|CAA32026.1| unnamed protein product [Proteus vulgaris]
          Length = 336

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 59/293 (20%), Positives = 105/293 (35%), Gaps = 67/293 (22%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
             G+S+ +LE  P +S+ L+   PP+ LQ   +    +                   Y  
Sbjct: 31  YIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQ----------------HEYVD 74

Query: 84  FTRAWLLACRRVLKPNGTLW-VIG----------SYHNIFRIGTMLQNLNFWILNDIVWR 132
           +  ++     + LKP+G+     G          S +N   +  M+  + F++  D  W 
Sbjct: 75  WFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVPARSIYNFRVLIRMIDEVGFFLAEDFYWF 134

Query: 133 KSNPMPNF------RGRRFQNAHETLIWASPSPKAKGYTFNYDALKA--ANEDVQMRSDW 184
             + +P+       R  R ++A  T+ W S +   K       A  +    + ++    +
Sbjct: 135 NPSKLPSPIEWVNKRKIRVKDAVNTVWWFSKTEWPKSDITKVLAPYSDRMKKLIEDPDKF 194

Query: 185 LIPICSGSERLRNKD--------------------------------GEKLHPTQKPEAL 212
             P    S     K                                 G K HP + P  L
Sbjct: 195 YTPKTRPSGHDIGKSFSKDNGGSIPPNLLQISNSESNGQYLANCKLMGIKAHPARFPAKL 254

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
               +   T+P D+++D F GS T+G VA++  R +I  EMK +Y+  +  R 
Sbjct: 255 PEFFIRMLTEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRF 307


>gi|288801506|ref|ZP_06406958.1| DNA (cytosine-5-)-methyltransferase domain protein [Prevotella sp.
           oral taxon 299 str. F0039]
 gi|288331587|gb|EFC70073.1| DNA (cytosine-5-)-methyltransferase domain protein [Prevotella sp.
           oral taxon 299 str. F0039]
          Length = 648

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 69/385 (17%), Positives = 134/385 (34%), Gaps = 94/385 (24%)

Query: 21  DKIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNG-------------QLYRPDHSLV 65
           + +++G  +S    L  +   VDL++ DPP+    +              ++ + D + +
Sbjct: 63  NLVLRGECLSACAYLKERGVKVDLVYIDPPFASGADYAKKIYIRRNPKVAEIIKQDETEI 122

Query: 66  DA----------VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
           D+            D WDK    E Y  +    L+A + V+    +++V   +H    + 
Sbjct: 123 DSEELRNFEEKMYGDVWDK----EGYLNWMYENLVAIKAVMSDTASIYVHLDWHIGHYVK 178

Query: 116 TMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP---------------- 157
            ++  +       N+IVW     +       F   H+T+   S                 
Sbjct: 179 ILMDEIFGEDKFRNEIVWHYPGGIKAIPT-YFPRKHDTIYVYSKGDIVIYNVQRKSIQEN 237

Query: 158 --SPKAKGYTFNYDALKAANEDVQMRSDWLI----------------------------P 187
               +   Y+ + +A+   N   + +  + +                             
Sbjct: 238 SLYNRWIKYSEDGEAITYKNFPRKDKVKFEMYVNRFISQNGRKPQENDELYRFEGAMIDD 297

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           + S    +     +  + TQKPEALL RI+ +S+  G ++ D F GSG + AVA +L R 
Sbjct: 298 VWSDCPAVFRSSEDINYSTQKPEALLERIIKASSNEGMLVADFFGGSGVTAAVANRLERK 357

Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTN 307
           FI  ++  + I+    R+   +     E+  +    +  R     + +   + PG    +
Sbjct: 358 FIHCDIGINSIETTRDRLCKAE--AEFEVMEVKDGVSLYRNPVQTMDKLKGLIPGLRNED 415

Query: 308 AQGNISATVCADGTLISGTELGSIH 332
           A                    GSIH
Sbjct: 416 ALDKFWE--------------GSIH 426


>gi|85716950|ref|ZP_01047914.1| DNA methylase N-4/N-6 [Nitrobacter sp. Nb-311A]
 gi|85696229|gb|EAQ34123.1| DNA methylase N-4/N-6 [Nitrobacter sp. Nb-311A]
          Length = 423

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 95/250 (38%), Gaps = 36/250 (14%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G+S     V + L      L+  DPPY +  +     P   +   V  +  K  
Sbjct: 174 RHRLLCGDSTIATDVEKVLAGVKPHLMVTDPPYGVNYD-----PAWRIRAGVNLNERKLG 228

Query: 77  --SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
             + +    +  AW       L P    +V  +      +   L+   F +   I+W K 
Sbjct: 229 KVANDDRADWREAW------ALFPGTVAYVWHAGRYTSEVQQSLEAAGFEVRAQIIWAKD 282

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
               +     +Q  HE   +A     +  +          + D +  + W I        
Sbjct: 283 RFALSRGHYHWQ--HEPCWYAVRGTSSSHW----------SGDRKQSTLWTI-------- 322

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
              +DG   H TQKP   + R + +++ PG  I +PF GSGT+   A+   RS   IE+ 
Sbjct: 323 NAREDGGHGHGTQKPVECMRRPIENNSSPGQAIYEPFSGSGTTIIAAEMTGRSCSAIELD 382

Query: 255 QDYIDIATKR 264
             Y+D+A  R
Sbjct: 383 PAYVDVAVLR 392


>gi|330007888|ref|ZP_08306110.1| DNA (cytosine-5-)-methyltransferase [Klebsiella sp. MS 92-3]
 gi|328535300|gb|EGF61788.1| DNA (cytosine-5-)-methyltransferase [Klebsiella sp. MS 92-3]
          Length = 242

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 53/259 (20%), Positives = 95/259 (36%), Gaps = 40/259 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++   +   V  ++ + +VDL+ AD PY                      WD        
Sbjct: 3   RLHNADCFDVFPQIASGTVDLVCADIPYGT----------------TQCRWDSVLD---- 42

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                       R++KP+  + +  +    F    +  NL  W  ++ +W K N      
Sbjct: 43  ---LALMWEQLYRIVKPSAAIVLFSA--QPFTSVLINSNLRDW-RSEWIWEKGNATGFLN 96

Query: 142 GRRFQ-NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER------ 194
            ++    AHE +             F +   +  ++   + S+      + ++       
Sbjct: 97  AKKQPLRAHENIEVFYRRQPTYNPQFTHGHERRTSKRKTVNSECYGKALTLTKYDSTSRY 156

Query: 195 -------LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                    +K     HPTQKP AL+  ++ + + PGD +LD   GSGT+G   ++  RS
Sbjct: 157 PRDVQFFSSDKQTGNYHPTQKPLALVQYLIETYSNPGDTVLDFTMGSGTAGVACQQTERS 216

Query: 248 FIGIEMKQDYIDIATKRIA 266
           FIGIE        A +R+ 
Sbjct: 217 FIGIEKDAAIYRTACERMG 235


>gi|6729995|pdb|1BOO|A Chain A, Pvuii Dna Methyltransferase (Cytosine-N4-Specific)
          Length = 323

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 59/293 (20%), Positives = 105/293 (35%), Gaps = 67/293 (22%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
             G+S+ +LE  P +S+ L+   PP+ LQ   +    +                   Y  
Sbjct: 18  YIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQ----------------HEYVD 61

Query: 84  FTRAWLLACRRVLKPNGTLW-VIG----------SYHNIFRIGTMLQNLNFWILNDIVWR 132
           +  ++     + LKP+G+     G          S +N   +  M+  + F++  D  W 
Sbjct: 62  WFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVPARSIYNFRVLIRMIDEVGFFLAEDFYWF 121

Query: 133 KSNPMPNF------RGRRFQNAHETLIWASPSPKAKGYTFNYDALKA--ANEDVQMRSDW 184
             + +P+       R  R ++A  T+ W S +   K       A  +    + ++    +
Sbjct: 122 NPSKLPSPIEWVNKRKIRVKDAVNTVWWFSKTEWPKSDITKVLAPYSDRMKKLIEDPDKF 181

Query: 185 LIPICSGSERLRNKD--------------------------------GEKLHPTQKPEAL 212
             P    S     K                                 G K HP + P  L
Sbjct: 182 YTPKTRPSGHDIGKSFSKDNGGSIPPNLLQISNSESNGQYLANCKLMGIKAHPARFPAKL 241

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
               +   T+P D+++D F GS T+G VA++  R +I  EMK +Y+  +  R 
Sbjct: 242 PEFFIRMLTEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRF 294


>gi|322378661|ref|ZP_08053095.1| putative type II cytosine specific methyltransferase [Helicobacter
           suis HS1]
 gi|322380031|ref|ZP_08054295.1| type II cytosine-specific methyltransferase [Helicobacter suis HS5]
 gi|321147547|gb|EFX42183.1| type II cytosine-specific methyltransferase [Helicobacter suis HS5]
 gi|321148914|gb|EFX43380.1| putative type II cytosine specific methyltransferase [Helicobacter
           suis HS1]
          Length = 391

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 101/251 (40%), Gaps = 11/251 (4%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +  ++ G++   L K+    + L+F  PPY    N + Y    +  + +    +  +   
Sbjct: 140 RPTLLVGDNRLTLNKIRQGQIQLVFTSPPY---YNARTYSSYKNYKEYLKQMQESLAQAY 196

Query: 80  AYDAFTRAWLLACRRVL-KPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
                 R  ++    V+ K  G  +    Y   F   ++L    F+ +++I+W K     
Sbjct: 197 RILEEGRFIIINVSPVIVKRAGREFESIRYPIHFDFHSILVQSGFYFIDEIIWIKPEVCV 256

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP---ICSGSERL 195
             R   +      L +           +  +     + +++  +  L     + S +   
Sbjct: 257 PNRIAGYLQTKRPLSYKPNCITESLLVYRKNTPFLLDRNMKRYNKRLKNDGAVDSTNCWF 316

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                +K HP   PE L++R+L   +  GD++ DPF GSGT   VA++++R  +  E  +
Sbjct: 317 ITPKSDKDHPAVFPEELVARVLRYYSFEGDVVCDPFAGSGTLARVAQRMKRIALLCEQNE 376

Query: 256 DYIDIATKRIA 266
           +++    KR+ 
Sbjct: 377 EFV----KRLK 383


>gi|118595064|ref|ZP_01552411.1| DNA methylase N-4/N-6 [Methylophilales bacterium HTCC2181]
 gi|118440842|gb|EAV47469.1| DNA methylase N-4/N-6 [Methylophilales bacterium HTCC2181]
          Length = 380

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 67/300 (22%), Positives = 111/300 (37%), Gaps = 67/300 (22%)

Query: 22  KIIKGNSISVLEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           KII G+S+  + K   K SV+LI   PP+ L L+ + Y  ++S               E 
Sbjct: 81  KIICGDSLKWMAKAENKKSVNLIVTSPPFGL-LSKKSYGNENS---------------EN 124

Query: 81  YDAFTRAWLLACRRVLKPNGTL-------WVIG----SYHNIFRIGTMLQNLNFWILNDI 129
           Y  + R++  +  +VL  +G+L       W  G    S ++   +  + +   F++  + 
Sbjct: 125 YCDWFRSFAESFNQVLADDGSLVIDIQGVWSKGIPARSLYHFKLLQMLCEEYGFYLCQEH 184

Query: 130 VWRKSNPMPNFRGR------RFQNAHETLIWASPSPKAKGYTFN---------------- 167
            W   + +P+          R ++A   + W S +P  K                     
Sbjct: 185 YWWNPSKLPSPAEWVTVKRVRVKDAVNCIWWLSKTPNPKANNKKILTSYSESMLSVLSNG 244

Query: 168 -------YDALKAANEDVQMRSDWLIP----------ICSGSERLRNKDGEKLHPTQKPE 210
                      K +     +     IP           C        K G K+HP + P 
Sbjct: 245 FYNKGTRPSGHKLSKSHFSINHGGSIPPNLIVASNAASCGPYFDYCKKYGLKIHPARFPY 304

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
           A+    +   T   D+ILDPF GS  +G VA+K  R +I IE   D+ +      A+  P
Sbjct: 305 AIPDYFIRFLTNENDLILDPFAGSSVTGFVAEKNNRKWIAIEKDIDFANGGKGHFANKSP 364


>gi|147919509|ref|YP_686751.1| N-4 cytosine-specific methyltransferase [uncultured methanogenic
           archaeon RC-I]
 gi|110622147|emb|CAJ37425.1| N-4 cytosine-specific methyltransferase [uncultured methanogenic
           archaeon RC-I]
          Length = 347

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 105/273 (38%), Gaps = 27/273 (9%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
             KI  GN+   ++ L A SV+L+   PPY  +++  + +      V    ++ D   ++
Sbjct: 4   THKIYFGNARD-MKDLSAGSVNLVVTSPPYPMIEMWDRQFSASSPGVRKALEAGDGKRAY 62

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLW-VIGS-----------YHNIFRIGTMLQNLNFWIL 126
           E              RVL P+G +   IG            Y N  RI        + +L
Sbjct: 63  ELMHRALDRVWHETDRVLAPSGIVCINIGDATRKVSDAFRLYPNHVRITDFFVKAGYDVL 122

Query: 127 NDIVWRKSNPMP---NFRGRRFQNA-----HETLIWASPSPKAKGYTFNYDALKAANEDV 178
             I+WRK++  P      G    NA     HE ++        + +  +    + +    
Sbjct: 123 PMIIWRKTSNKPNKFMGSGMLPPNAYVTLEHEYILIFRKGGN-RQFGEDAKVRRQSAYFR 181

Query: 179 QMRSDWLIPICS---GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
           + R+ W   + S   G  +  N  G        P  L  R++   +  GD +LDPF G+G
Sbjct: 182 EERNAWFSDVWSDLKGVPQQLNGKGRNR-SAAYPFELPYRLIQMYSVYGDTVLDPFAGTG 240

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           T+   A    R+  G E+      I  +R+A V
Sbjct: 241 TTMLAAMASARNSAGYEIDGTLEQIIDERVAGV 273


>gi|256396438|ref|YP_003118002.1| DNA methylase N-4/N-6 domain-containing protein [Catenulispora
           acidiphila DSM 44928]
 gi|256362664|gb|ACU76161.1| DNA methylase N-4/N-6 domain protein [Catenulispora acidiphila DSM
           44928]
          Length = 345

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 64/345 (18%), Positives = 112/345 (32%), Gaps = 109/345 (31%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +++I+ G+  + L +LP  +V  +   PPY    +               D      + +
Sbjct: 9   RNRILVGDVRARLSELPDAAVHCVITSPPYWSLRDY-----------GHPDQIGAEPTVQ 57

Query: 80  AYDAFTRAWLLACRRVLKPNGTLW-VIGSYHNIF---------------RIGTMLQNLNF 123
           A+     A      RVL+P+G LW  +G  ++                 R+   +    +
Sbjct: 58  AWAETIAAVCGDLGRVLRPDGVLWLNLGDGYSRHIREGAAKKCLLLGPERVALKMTQSGW 117

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA--------- 174
            + N ++W K NPMP     R   +HE L   + SP+   Y F+ DA++           
Sbjct: 118 LLRNKVIWAKRNPMPANVRDRLSTSHEYLYCFTRSPQ---YYFDLDAIREPAVTANKQQR 174

Query: 175 -NEDVQMRSDWLIPICSG-------------------------------SERLRNKDGEK 202
                       +P  +G                                  +       
Sbjct: 175 AGNRATYPPRTAVPSLNGGSTSRVDLNHGLSAMKARGVQSHPLGKNPGDVWSISTASYHG 234

Query: 203 LHPTQKPEALLSRILVSSTKP--------------------------------------G 224
            H    P  L+ R L+++                                          
Sbjct: 235 AHFATFPVELVRRPLLATCPERTCAACGTPWARTLLGTGHRRASSGPLRQACLCQAGWQP 294

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            ++LDPF G+GT G  A++  R ++GIE+  D+  +AT RIA  +
Sbjct: 295 GLVLDPFIGAGTVGVAAERFGRDWLGIELNPDFAALATARIAEAR 339


>gi|317012500|gb|ADU83108.1| putative type II cytosine specific methyltransferase [Helicobacter
           pylori Lithuania75]
          Length = 403

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 59/269 (21%), Positives = 100/269 (37%), Gaps = 46/269 (17%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K  ++ G++   L K+   S++LIF  PPY    N ++Y                + +++
Sbjct: 142 KPSLLIGDNAQTLNKIVPNSINLIFTSPPY---YNARIYS--------------DYKNYK 184

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGS---------------YHNIFRIGTMLQNLNFW 124
            Y       L AC RVL+    + +  S               Y   F    +L +  F+
Sbjct: 185 DYLNAMSQSLKACFRVLEEGRFIIINVSPVITKRAGREFESVRYPIHFDFHQILIDNGFY 244

Query: 125 ILNDIVWRKSNPMPNFR-----------GRRFQNAHETLIWASPSPKA---KGYTFNYDA 170
            +++I+W K +     R           G +     E+L+           K        
Sbjct: 245 FVDEILWIKPDFSVPNRIGGYLQNKKPLGYKPNCVSESLLVYRKKAPFLLDKNIKIAEKR 304

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
           LK   ++  +     +PI + +         K HP   PE+L  R+L   +   +++ DP
Sbjct: 305 LKPNKQNNTLFGKKELPIETTNCWYIAPKSSKDHPAVFPESLCERVLNYYSFENEVVCDP 364

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           F GSGT G VAK + R  +  E    Y  
Sbjct: 365 FAGSGTFGMVAKSMGRIPLLCEQHPKYAQ 393


>gi|53803170|ref|YP_115058.1| prophage LambdaMc01, DNA methyltransferase [Methylococcus
           capsulatus str. Bath]
 gi|53756931|gb|AAU91222.1| prophage LambdaMc01, DNA methyltransferase [Methylococcus
           capsulatus str. Bath]
          Length = 447

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 52/302 (17%), Positives = 98/302 (32%), Gaps = 53/302 (17%)

Query: 21  DKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            ++I G++     V   +  +   L F  PPY  Q +                       
Sbjct: 155 HRLICGDATDPAVVAALMRGERAKLCFTSPPYGNQRDYTTG------------------G 196

Query: 78  FEAYDAFTRAWL-----LACRRVLKPNGTLWVIGSYHNIFRIGT-MLQNLNFWILNDIVW 131
              +DA  R            +VL   G +         +      ++   +      VW
Sbjct: 197 IADWDALMRGVFGHLPMAEDGQVLVNLGLIHRDNEVIPYWDAWLGWMRAQGWRRFAWYVW 256

Query: 132 RKSNPMPNFRGRRFQNAHETLIWAS-------PSPKAKGYTFNYDALKAANEDVQMRSDW 184
            +   MP     RF  + E +   +            K    +       +       D 
Sbjct: 257 DQGPGMPGDWAGRFAPSFEFVFHFNRQSRKPNKIVPCKHAGQDSHLRADGSSTAMRNKDG 316

Query: 185 LIPICSG----------------SERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDII 227
            +   +                   R + K G+ + HP   P AL   ++ + +  G ++
Sbjct: 317 EVGGWTHAGLPTQDTRIPDSVIRVMRHKGKIGKGIDHPAVFPVALPQFVMEAYSDEGAVV 376

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
            +PF GSGT+   A++  R    +E+  +Y+D+A KR     P  ++ +T+L   ++   
Sbjct: 377 FEPFGGSGTTMLAAERTGRVCRSVEIAPEYVDVAIKRFQQNHP--DVAVTLLASGQSFAE 434

Query: 288 VA 289
           VA
Sbjct: 435 VA 436


>gi|302035483|ref|YP_003795805.1| site-specific DNA-methyltransferase N-4/N-6 (phage related)
           [Candidatus Nitrospira defluvii]
 gi|300603547|emb|CBK39877.1| Site-specific DNA-methyltransferase N-4/N-6 (phage related)
           [Candidatus Nitrospira defluvii]
          Length = 469

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 53/305 (17%), Positives = 99/305 (32%), Gaps = 47/305 (15%)

Query: 20  KDKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + ++I G++     V   +   +  L F  PPY  Q +                 WD   
Sbjct: 176 QHRLICGDATDSSVVATLMQGDAARLCFTSPPYGNQRDYTSGGVK---------DWDGLM 226

Query: 77  SFEAYDAFTR---AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                          L+    + + N  +     +         ++   +      VW +
Sbjct: 227 RSVFGLVPMADDGQVLVNLGLIHRDNEVIAYWDGW------LDWMRTQGWRRFAWYVWDQ 280

Query: 134 SNPMPNFRGRRFQNAHETLIWA-------SPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
              MP     R   + E +          +     K            +       D  +
Sbjct: 281 GPGMPGDWQGRLAPSFEFVFHFNRASLKPNKIVPCKHAGLESHLRADGSSTAMRGKDGEV 340

Query: 187 PICSGS----------------ERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILD 229
              +                   R + K G+ + HP   P AL   ++ + T  GD++ +
Sbjct: 341 GGWTHKGQPTQDTRIPDSVIRVMRHKGKIGQDIDHPAVFPVALPEFVIEAYTDTGDLVFE 400

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
           PF GSGT+   A++  R    +E+  +Y+D+A KR     P   + +T+L   ++   VA
Sbjct: 401 PFGGSGTTMLAAQRTGRVCRTVEIAPEYVDVAIKRFQQNHP--GVPVTLLATGQSFDDVA 458

Query: 290 FNLLV 294
            + LV
Sbjct: 459 DDRLV 463


>gi|300916082|ref|ZP_07132854.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 115-1]
 gi|300416575|gb|EFJ99885.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 115-1]
          Length = 282

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 57/275 (20%), Positives = 107/275 (38%), Gaps = 56/275 (20%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN-----------------------GQL 57
           + +  G+SI +++K+  +S  LI +D PY +  +                       G +
Sbjct: 14  NSVTNGDSIELIKKVQTQSAHLILSDIPYGIGADDWDVLHKNSNNAYLGSSPAQKSAGAI 73

Query: 58  YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
           ++     ++  +D+ D+    E Y  +   W     R LKP  +  +        R    
Sbjct: 74  FKKRGKPINGWSDA-DRKIPLE-YQQWCEEWASEWYRTLKPGASAIIFAGRRFSHRCICA 131

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE------------------------TLI 153
           ++N  F + + I W ++      R +R    +E                         ++
Sbjct: 132 MENAGFNLRDIIAWMRTKA--PHRAQRLSCVYERRGDQYNKEKWDGWRVGNLQPTFEPIL 189

Query: 154 WASPSPKAKGYTFNY---DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
           W S   K  G   +      + A N+D     +        +   RN+ G  LHPTQKP 
Sbjct: 190 WFSKPYKIGGTIADNVLLHGVGAYNQDAFTARNGKPENVIHAGFERNEGG--LHPTQKPV 247

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +L+  ++  +T+ G +++DPF GSG++   AK+L 
Sbjct: 248 SLMKALIELTTQEGQLVIDPFSGSGSTLVAAKELG 282


>gi|260576703|ref|ZP_05844689.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sp. SW2]
 gi|259021070|gb|EEW24380.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sp. SW2]
          Length = 454

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 90/267 (33%), Gaps = 33/267 (12%)

Query: 20  KDKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + ++  G++     V   +  +   L+F  PPY  Q +    +            WD   
Sbjct: 173 RHRLCCGDATDPAAVARLMQGEQATLMFTSPPYAQQRDYGAAKEK-------VGDWDALM 225

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR-IGTMLQNLNFWILNDIVWRKSN 135
                  FT A +    +VL   G +     +   +      ++   +      VW +  
Sbjct: 226 QG----VFTVAPVAGDAQVLVNLGLVHRDSEWQPYWEGWVEWMRGSGWRRFGWYVWDQGP 281

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYT--------------FNYDALKAANEDVQMR 181
            +P     R   +HE +   + +P+    T                        +     
Sbjct: 282 GLPGDWNGRLAPSHEFIFHFNRAPRKPHKTVPSKHAGETLGGGGLRGADGTVHAKTGTGN 341

Query: 182 SDWLIPICSGSERLRNKDG----EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           +     I     R+    G       HP   P AL+  +L + + PGD+I +PF GSGT 
Sbjct: 342 AIQSHRIPDSVFRIMRHKGGLGAAGSHPAVFPVALVEAVLTAFSDPGDLIFEPFCGSGTQ 401

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKR 264
              A++  R    +E+   Y D+A +R
Sbjct: 402 IVAAERAGRRCFAMELDPVYCDVAVRR 428


>gi|289579736|ref|YP_003478202.1| DNA methylase N-4/N-6 domain protein [Natrialba magadii ATCC 43099]
 gi|289529289|gb|ADD03640.1| DNA methylase N-4/N-6 domain protein [Natrialba magadii ATCC 43099]
          Length = 360

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 58/303 (19%), Positives = 107/303 (35%), Gaps = 35/303 (11%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDKF 75
            E   ++  G+S   L  +   +V+L+   PPY  +++   L+      +    +S    
Sbjct: 1   METTHRVFVGDSRD-LAAVGDDTVELVVTSPPYPMIEMWDDLFTELDPAIGDALESGAGR 59

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLW------------VIGSYHNIFRIGTMLQNLNF 123
            +FEA  A          RVL   G                   + N  R+    ++  F
Sbjct: 60  RAFEAMHAQLDRVWDEVERVLVDGGIACINVGDATRSVDGSFRVFSNHARVLEAFESRGF 119

Query: 124 WILNDIVWR-KSNPMPNFRGR-------RFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
             L D++WR  +N    F G             HE ++      +++ +    D    A 
Sbjct: 120 DPLPDVLWRKPTNSAAKFMGSGTLPPNAYVTLEHEYVLLFRNGGESRSFEPGADRRYEAA 179

Query: 176 EDVQMRSDWLIPICS-------------GSERLRNKDGEKLHPTQKPEALLSRILVSSTK 222
              + R++W   + +              +ER       +      P  +  R++   + 
Sbjct: 180 YFWEERNNWFSDVWTDVKGELQHLEQPDNTERSGQDTDLRDRSAAYPFEIPYRLITMYSA 239

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
            GD +LDPF+G+GT+   A    R  IG E++  + D+  +R+  V  L          +
Sbjct: 240 YGDTVLDPFWGTGTTTLAAMCAGRHSIGQELETGFRDVFDERVERVPSLSRSVGQARLER 299

Query: 283 RTE 285
             E
Sbjct: 300 HRE 302


>gi|85703022|ref|ZP_01034126.1| DNA methylase N-4/N-6 [Roseovarius sp. 217]
 gi|85671950|gb|EAQ26807.1| DNA methylase N-4/N-6 [Roseovarius sp. 217]
          Length = 457

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 96/257 (37%), Gaps = 34/257 (13%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +++ G++     V   L      L+  DPPY +  +        +   A          
Sbjct: 210 HRLLCGDATSAADVARLLGDVRPHLMVTDPPYGVMYDPDW----RNRAGASETKRTGKVL 265

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            +    +  AW       L P    +V     +   +   L    F I + I+W K   +
Sbjct: 266 NDDRADWRAAW------ALFPGDVAYVWHGALHATTVAESLVASGFDIRSQIIWAKDRHV 319

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
            +     +Q  HE   +A              A    + D +  + W IP        R+
Sbjct: 320 LSRGHYHWQ--HEPAWYAVR------------AKGHWSGDRKQSTLWSIP-------NRD 358

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           +D E  H TQKP   + R +++++ PG ++ +PF GSGT+   A+  +R    IE+   Y
Sbjct: 359 QDAETSHGTQKPVECMRRPILNNSSPGQVVYEPFCGSGTTLIAAQSTKRIGFAIELDPAY 418

Query: 258 IDIATKRIASVQPLGNI 274
           +D+A  R  +      +
Sbjct: 419 VDVAVLRWQAFTDQDAV 435


>gi|189036170|gb|ACD75435.1| AMDV4_6 [uncultured virus]
          Length = 219

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 94/257 (36%), Gaps = 46/257 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPP--YNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           + I   +++  L ++ ++S+D I  DPP  YN   +   +   +   + V++ +      
Sbjct: 4   NTIENKDALEGLREMESESIDCIITDPPWPYN---SYNQFPNRNLTYNTVSNEY------ 54

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
                          R+LK     +V  +   + +  T L+   F     ++   +    
Sbjct: 55  ------LEETFKELYRILKKGKHAYVFTTNLRLGKDITTLEKCGFRYNQTLILLAN---G 105

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
              G  +++ +  +++      +     +   +   +    +                  
Sbjct: 106 IKLGYGYRHTYLPILFLDKEGTSVTNLHDVSNVLGPSNFNVLS----------------- 148

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                    KP  ++   L  STK GDI+ DPF GSG++    K++ R+++G E+ ++  
Sbjct: 149 ---------KPVEIIDTFLRQSTKEGDIVFDPFMGSGSTAIACKRIGRNYLGFEIDKERF 199

Query: 259 DIATKRIASVQPLGNIE 275
           +    RI       ++E
Sbjct: 200 ETTNIRIERTHVFDDME 216


>gi|213615498|ref|ZP_03371324.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 211

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 60/196 (30%), Positives = 92/196 (46%), Gaps = 19/196 (9%)

Query: 105 IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
           + S  N+  I    + L F I + IVW   +       + F + +E ++    +P  K Y
Sbjct: 2   MNSTENMPYIDLKCRTL-FTIKSRIVWSYDSSGVQ-AKKYFGSMYEPILMMVKNP--KSY 57

Query: 165 TFNYDAL------KAANEDVQMRSDWLIPI---------CSGSERLRNKDGEKLHPTQKP 209
           TFN DA+       A    +  R +   P           S        D  + HPTQKP
Sbjct: 58  TFNRDAILVETTTGAKRALIDYRKNPPQPYNQKKVPGNVWSFPRVRYLMDEYENHPTQKP 117

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            ALL RI+++S+ P D +LDPF GS T+GAVA    R FIGIE+  +Y+ +  +R++   
Sbjct: 118 SALLKRIILASSNPSDTVLDPFAGSFTTGAVAAASGRKFIGIELNNEYVKMGLRRLSVTS 177

Query: 270 PLGNIELTVLTGKRTE 285
                EL  +  ++T+
Sbjct: 178 HYSENELAKVKKRKTQ 193


>gi|119511905|ref|ZP_01631004.1| DNA methylase N-4/N-6 [Nodularia spumigena CCY9414]
 gi|119463473|gb|EAW44411.1| DNA methylase N-4/N-6 [Nodularia spumigena CCY9414]
          Length = 301

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 53/292 (18%), Positives = 102/292 (34%), Gaps = 64/292 (21%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
             G+S+ +++ L   S++LI   PP+ L                         + + Y  
Sbjct: 26  YLGDSLKLIKSLDQNSINLILTSPPFALTRQKAYGN----------------ETADKYIE 69

Query: 84  FTRAWLLACRRVLKPNGTLW-----------VIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           +   +    +RVL  NG+              + S +    +  + + + F++  +    
Sbjct: 70  WFLPFAYEFKRVLAENGSFVLDLGGAYLRGNPVRSIYQYELLVRLCKEVGFFLAQEFYHY 129

Query: 133 KSNPMPNF------RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
               +P        R  R +++   + W S +P  K          + +    +++ +  
Sbjct: 130 NPARLPTPAEWVTIRRIRVKDSVNVVWWLSKTPNPKADNRKVLKPYSQSMKQLLKNGYKA 189

Query: 187 PI-CSGSE------------------------------RLRNKDGEKLHPTQKPEALLSR 215
            I  SG +                              R    +G K HP + P      
Sbjct: 190 KIRPSGHDISDKFQKDNQGAIPPNLLEIANTESNSAYLRRCKAEGMKPHPARFPSGFAEF 249

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            +   T  GD++LDPF GS T+G VA+  +R +I  E+ +DY+  +  R A 
Sbjct: 250 FIKFLTDEGDMVLDPFAGSNTTGFVAQTWQRRWISFELNEDYVKGSRYRFAQ 301


>gi|237751381|ref|ZP_04581861.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
 gi|229372747|gb|EEO23138.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
          Length = 376

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 56/260 (21%), Positives = 98/260 (37%), Gaps = 39/260 (15%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K  ++ G++   L K+    + LIF  PPY    N ++Y                + S++
Sbjct: 126 KPSLLIGDNRLSLNKIKDNQISLIFTSPPY---YNARIYS--------------DYVSYK 168

Query: 80  AYDAFTRAWLLACRRVLKPN---------------GTLWVIGSYHNIFRIGTMLQNLNFW 124
           AY    +  L  C R+L+                 G  +    Y   F    +L    F+
Sbjct: 169 AYLKAMQETLKQCYRILEDGRFIIINVSPVITKRAGREFESIRYPIHFDFHQILCESGFY 228

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK-----AANEDVQ 179
            +++I+W K       R   +      L +           +  ++         N D  
Sbjct: 229 FIDEILWIKPEYSVPNRVAGYLQTKMPLSYKPNCISESLMVYRKNSPFLLDKNIKNYDKS 288

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
           +++D  +   S +    +   +K HP   PE L  R+L   +  GD++ DPF GSGT G 
Sbjct: 289 LKNDDELD--STNCWYISPKADKNHPAVFPEELCKRVLKYYSFKGDVVCDPFAGSGTFGR 346

Query: 240 VAKKLRRSFIGIEMKQDYID 259
           VA+ + R  +  E  + Y +
Sbjct: 347 VARSMGRIPLLCEANESYAE 366


>gi|172058382|ref|YP_001814842.1| DNA methylase N-4/N-6 domain-containing protein [Exiguobacterium
           sibiricum 255-15]
 gi|171990903|gb|ACB61825.1| DNA methylase N-4/N-6 domain protein [Exiguobacterium sibiricum
           255-15]
          Length = 492

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 56/283 (19%), Positives = 101/283 (35%), Gaps = 43/283 (15%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLE-----KLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
            +N  +N   +  ++ I G+S+  L+      +P   VDLI   PPY           D 
Sbjct: 1   MLNSVENLNMQDLNQYINGSSL-FLKEYFEKTIP--FVDLIVTSPPY----------WDM 47

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY--------HNIFRI 114
                V +       + AY    +        + K + +++VI                I
Sbjct: 48  KDYGEVKEQTGFGQEYAAYLKDIKKIFEGVYHIAKDSASMFVIVDTMKRDGRMIRLPDDI 107

Query: 115 GTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK--AKGYTFNYDALK 172
              L+ + +   + I+W K   +P  R  + +N  E ++  +       K Y        
Sbjct: 108 SRELETVGWVHQDTIIWDKGKTLPWSRKGQMRNVFEYVLMFTKGKSTSYKYYIDRIKTTD 167

Query: 173 AANEDVQMRSD------------WLIPICSGSERLRNKD---GEKLHPTQKPEALLSRIL 217
              E      +            W   I +       KD    E  H    P  +++R++
Sbjct: 168 KLKEWWIDYPERYGPQGKVPDNIWEFYIPTQGSWGSKKDFGEEEFRHACPFPPEMMARLI 227

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           + +T   D++ DPF G+G   A A+K+ R F+G +   DY  +
Sbjct: 228 LLATDENDVVFDPFAGTGVLLATAEKMNRRFLGFDTNPDYKKV 270


>gi|291164792|gb|ADD80822.1| DNA methylase [Rhodococcus phage ReqiDocB7]
          Length = 236

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 100/256 (39%), Gaps = 31/256 (12%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL--NGQLYRPDHSLVDAVTDSWDK 74
            E    I  G+++ +   LP+ SV+ +  DPP+ +    N  +          + +  D 
Sbjct: 1   METVHDIWLGDAVDLCAILPSGSVNCVITDPPFGIDAISNQSVTEKGKEYARKIANDSDP 60

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH---NIFRIGTMLQNLNFWILNDIVW 131
             + E ++    + L         +  L++  S+H   +   +   L    F   N ++W
Sbjct: 61  QVAIEVFNKVMDSLL----PKTSDDCDLYIFTSWHVLDHWIGVAHDLSRHGFTYKNMLIW 116

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
            + N         +  ++E +++     + +                 +     +P  + 
Sbjct: 117 -EKNGASMGDTNSWGTSYEVILFLKKGKRIR----------TDKRRPGVIRVGQLPANT- 164

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
                      +HP +KP  LL  +L  S+  GD+++DPF GSG+    AK++ R+ I +
Sbjct: 165 ----------LIHPHEKPVELLQILLRHSSSEGDLVVDPFGGSGSLVRAAKEIGRNAIAM 214

Query: 252 EMKQDYIDIATKRIAS 267
           E+ ++    A +++  
Sbjct: 215 ELDENNWKKAVRKLQD 230


>gi|296534837|ref|ZP_06897177.1| DNA (cytosine-5-)-methyltransferase [Roseomonas cervicalis ATCC
           49957]
 gi|296264835|gb|EFH11120.1| DNA (cytosine-5-)-methyltransferase [Roseomonas cervicalis ATCC
           49957]
          Length = 267

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 95/247 (38%), Gaps = 31/247 (12%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +++ G++     V   L      L+  DPPY +  + +            T       +
Sbjct: 18  HRLLCGDATSAADVARLLDGTRPHLMITDPPYGVNYDPEWRNEAGVSATMRTGK----VA 73

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            +    +  AW       L P    +V  +  +   +   L+   F I + IVW KS  +
Sbjct: 74  NDDRADWREAW------TLFPGDVAYVWHAGVHARTVIESLEAAGFAIRSQIVWAKSRFV 127

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                  +Q  HE  ++A        +    D                 PI +G     +
Sbjct: 128 LGRGDYHWQ--HEPALYAVRKGATGHWQGARDQATLW------------PISTG----GD 169

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           +D   +H TQKP   + R +++++ PG+ + +PF GSG++   A+   R    +E+   Y
Sbjct: 170 EDAATVHGTQKPVECMRRPMLNNSAPGEAVYEPFCGSGSTIIAAETSGRICYAMEIDPRY 229

Query: 258 IDIATKR 264
           +D+A +R
Sbjct: 230 VDVAVRR 236


>gi|124008729|ref|ZP_01693419.1| chromosome partitioning protein, putative [Microscilla marina ATCC
           23134]
 gi|123985805|gb|EAY25678.1| chromosome partitioning protein, putative [Microscilla marina ATCC
           23134]
          Length = 495

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 49/274 (17%), Positives = 95/274 (34%), Gaps = 19/274 (6%)

Query: 1   MSQKN-SLAINENQNSIFEWKDKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQLNGQ 56
           M ++   + + + +      K ++I G+S+     E L   +   ++  DPPYN+  +  
Sbjct: 201 MPEEEAEIVVQKGEVYELNGKHRLICGDSLLAETFETLMNGTLARILITDPPYNIPYSLF 260

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
                    D V    +   S + +  F   ++             +    + +++ +  
Sbjct: 261 GGLGKVQHEDFVMGIGE--MSDQEFVEFLATYMRHAVGHTVDGSIHYNFIDFRHVWHMCE 318

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
               +        V   +  +    G  ++  HE                         +
Sbjct: 319 AGGKVYGSHEPKQVCVWNKSI-QANGSFYRAKHEFCFIFKSGEAK-------HLSHLELK 370

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKL-----HPTQKPEALLSRILVSSTKPGDIILDPF 231
           D    + W     +       K+  +L     HPT KP  +++  L+ +T  GDI LD F
Sbjct: 371 DRFRSNVWEYKSANDFSNEERKEFGRLGALENHPTPKPVRMIADALLDTTNEGDIALDCF 430

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
            GSGT+   A++ RR   GIE +  Y+     R 
Sbjct: 431 LGSGTTLMAAERTRRICYGIEYEPGYMQGILTRF 464


>gi|257052261|ref|YP_003130094.1| DNA methylase N-4/N-6 domain protein [Halorhabdus utahensis DSM
           12940]
 gi|256691024|gb|ACV11361.1| DNA methylase N-4/N-6 domain protein [Halorhabdus utahensis DSM
           12940]
          Length = 344

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 64/290 (22%), Positives = 106/290 (36%), Gaps = 24/290 (8%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDKF 75
            E    ++ G++  +   LPA SVDL+   PPY  +++   ++      +    D+ D  
Sbjct: 1   METDHAVVTGDAREL--SLPADSVDLVVTSPPYPMIEMWDDIFAALDPAIGDALDADDGQ 58

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNG-----------TLWVIGSYHNIFRIGTMLQNLNFW 124
            +FEA            +RVL   G           TL     Y N   I   + +  F 
Sbjct: 59  RAFEAMHDVLDVVWEQLQRVLVEGGIAAINVGDATRTLDRFRQYPNAGEITRRMVDYGFD 118

Query: 125 ILNDIVWRKS-NPMPNFRGR-------RFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
            L DIVWRK  N    F G             HE+++     P+ + +    +    +  
Sbjct: 119 PLPDIVWRKPANSGAKFMGSGMVPPNAYPTLEHESILLFRNGPR-RSFPPGDETRYESAY 177

Query: 177 DVQMRSDWLIPICSGSERLRNKD-GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
             + R+ W   +   +   +  D G +      P  +  R++   +  GD +LDPF+G+G
Sbjct: 178 FWEERNQWFSDLWEMTGTPQGLDAGLRERSGAFPVEIPLRLIRMFSVYGDTVLDPFWGTG 237

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           T+   A    R  +G E   D       RI  +        T    +  E
Sbjct: 238 TTTLAAMLAGRESVGYERDADLRAAFDDRIEGLPERSRERATQRLERHRE 287


>gi|229051402|ref|ZP_04194907.1| DNA methylase N-4/N-6 [Bacillus cereus AH676]
 gi|228721971|gb|EEL73411.1| DNA methylase N-4/N-6 [Bacillus cereus AH676]
          Length = 301

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 62/308 (20%), Positives = 100/308 (32%), Gaps = 95/308 (30%)

Query: 43  IFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL 102
           +   PPY    +             V        + E Y +   +     +RVL+ +GTL
Sbjct: 1   MVTSPPYWGLRDY-----------GVDGQIGLEETVEEYVSNLVSVFREVKRVLRDDGTL 49

Query: 103 WVIGSYHN-----------------------------------------------IFRIG 115
           W+                                                      +R+ 
Sbjct: 50  WLNLGDAYAGSGRGRNADGKGNPGNNHFQSVGQVTGIVSVTKSVDGLKPKDLIGLPWRVA 109

Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA----- 170
             LQ   +++  DIVW K N MP     R   +HE +   S SP    Y +++++     
Sbjct: 110 FALQQDGWYLRQDIVWNKPNAMPESVRDRPTKSHEYIFLLSKSP---KYYYDHESIKEPA 166

Query: 171 -----------------------------LKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
                                                  R+            +  K  +
Sbjct: 167 VYGQQDVRGSEGAFGPPQRAKRTSKEKGSFNGKYGHEAFRAIRDKRNKRSVWTVSTKPLK 226

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           + H    PEAL+   +++      I++DPFFGSGT G VA K  R+FIGIE+   YI+I+
Sbjct: 227 EAHFATFPEALIEPCILAGAPAEGIVMDPFFGSGTVGRVAAKHNRNFIGIELNPGYIEIS 286

Query: 262 TKRIASVQ 269
            + ++ VQ
Sbjct: 287 DRLLSDVQ 294


>gi|295100556|emb|CBK98101.1| DNA modification methylase [Faecalibacterium prausnitzii L2-6]
          Length = 241

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 51/266 (19%), Positives = 86/266 (32%), Gaps = 49/266 (18%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
            + I  L  LP  SVD++  DPPY    N                 WD            
Sbjct: 1   MDGIEGLRSLPKHSVDMLLTDPPYGTTRNY----------------WDVPLP-------L 37

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
                A +  +KPNG +              +  +    +  + +W K          R 
Sbjct: 38  PELWEAVKWAVKPNGAVLFFA---QCPFDKVLGASNLAMLRYEWIWYKERGTGFLNANRA 94

Query: 146 --QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK- 202
             + +   L++   SP      +N                         ER  ++  +  
Sbjct: 95  PLKKSENILVFYQKSP-----VYNPQFTYGKPYTRVHSRSGTSSNYGKFERQGSESNDGR 149

Query: 203 ---------------LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                          +HPTQKP  L   ++ + T+PG+++ D   GSGT+   A    R 
Sbjct: 150 RYPGNVLFVPTVSGGIHPTQKPVELCEYLIRTYTRPGELVADICAGSGTTAIAAINTERR 209

Query: 248 FIGIEMKQDYIDIATKRIASVQPLGN 273
           F+  E    +   A++RI + Q + +
Sbjct: 210 FVCFETAPAFYAAASERIRAAQAVKS 235


>gi|55378613|ref|YP_136463.1| CTAG modification methylase [Haloarcula marismortui ATCC 43049]
 gi|55231338|gb|AAV46757.1| CTAG modification methylase [Haloarcula marismortui ATCC 43049]
          Length = 342

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 58/274 (21%), Positives = 102/274 (37%), Gaps = 25/274 (9%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDKF 75
            E   ++  G++ ++    P  SV+L+   PPY  +++   ++      +    DS D  
Sbjct: 1   METTHRVRTGDARTL--ACPDDSVELVITSPPYPMIEMWDDIFTALDPDIGTALDSDDGD 58

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWV------------IGSYHNIFRIGTMLQNLNF 123
            +F        A      RVL P G   +              SY N   I   L +   
Sbjct: 59  RAFTLMHDVLDAVWAEIERVLVPGGIACINVGDATRSLSDGFRSYPNHAEITDRLTDHGL 118

Query: 124 WILNDIVWR-KSNPMPNFRGR-------RFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
             L DI+WR  +N    F G             HE ++    + + +      D    + 
Sbjct: 119 RALPDILWRKPTNSGAKFMGSGMVPPNAYPTLEHEHIL-VFRNGERRRLEPGADRRYESA 177

Query: 176 EDVQMRSDWLIPICS-GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
              + R++W   +     E     DG +      P  +  R++   +  GD +LDPF G+
Sbjct: 178 YFWEERNEWFSDLWELPGETQDLDDGLRDRSGAFPLTVPYRLISMFSVYGDTVLDPFLGT 237

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           GT+   A    R+ IG++   D +    +R+A+ 
Sbjct: 238 GTTTLAAMVAGRNSIGVDRDPDLLSALEERVATA 271


>gi|156741157|ref|YP_001431286.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156232485|gb|ABU57268.1| DNA methylase N-4/N-6 domain protein [Roseiflexus castenholzii DSM
           13941]
          Length = 314

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 98/277 (35%), Gaps = 44/277 (15%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH--SLVDAVTDSWDKFSSFEAY 81
           I  +    + + PA+S+  I  DPPY +    + Y PD      +     W    SF+ +
Sbjct: 25  IHADCYEWMRQAPAESIHAIVTDPPYGV----KEYDPDQLEKRSNGHGGVWRIPPSFDGH 80

Query: 82  D-------------------AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
           +                    +   W     R+L+P   +++  +      +   L +  
Sbjct: 81  NRSPLPRFTALNPRERARIQEYFYEWARLTLRLLRPGAHVFLASNVFLSQIVFAALTDAG 140

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETL---------------IWASPSPKAKGYTFN 167
                 ++           G R +NA E                 I+  P PK       
Sbjct: 141 LEFRGQVIRLVRTLRG---GDRPKNAEEEFPDVCSMPRGCYEPWGIFRKPVPKDMTVGAC 197

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK-PGDI 226
               +      +   +    +       + +     HP+ KP++ L +I+ +S      I
Sbjct: 198 LRTFQTGGLRRKPDGNPFEDVIESERTPQKERSIANHPSLKPQSFLRQIVYASLPLGKGI 257

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +LDPF G+G++ A A+ +  + IGIE  ++Y  ++ +
Sbjct: 258 VLDPFMGAGSTLAAAEAVGYTAIGIEKNREYYAMSLR 294


>gi|124004362|ref|ZP_01689208.1| prophage LambdaSa04, DNA methylase [Microscilla marina ATCC 23134]
 gi|123990432|gb|EAY29931.1| prophage LambdaSa04, DNA methylase [Microscilla marina ATCC 23134]
          Length = 495

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 89/256 (34%), Gaps = 22/256 (8%)

Query: 20  KDKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQLN--GQLYRPDHSLVDAVTDSWDK 74
           K ++I G+S+  +  E L   +   ++  DPPYN+  +  G L +  H            
Sbjct: 221 KHRLICGDSLLAATFETLMNGTLARVLITDPPYNIPYSLFGGLGKVQHEDFSMAAGEMGD 280

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
               + +  F   ++    +        +    + + + +      +        V   +
Sbjct: 281 ----QEFVEFLATYMRHAVQHTVDGSIHYNFMDFRHAWHMCEAGGKVYGSREPKQVCVWN 336

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
             +    G  ++  HE                         +D    + W     +    
Sbjct: 337 KSI-QANGSFYRAKHEFCFIFKSGEAK-------HLSHLELKDRFRSNVWEYKSANDFSN 388

Query: 195 LRNKDGEKL-----HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
              K+  +L     HPT KP  +++  L+ +T  GDI LD F GSGT+   A++ RR   
Sbjct: 389 EERKEFGRLGALENHPTPKPVRMIADALLDTTNEGDIALDCFLGSGTTLMAAERTRRICY 448

Query: 250 GIEMKQDYIDIATKRI 265
           G+E +  Y+     R 
Sbjct: 449 GVEYEPGYMQGILTRF 464


>gi|13542307|ref|NP_111995.1| adenine specific DNA methylase [Thermoplasma volcanium GSS1]
          Length = 681

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 61/325 (18%), Positives = 120/325 (36%), Gaps = 79/325 (24%)

Query: 18  EWKDKIIKGNSISVLEKL---------PA--KSVDLIFADPPYNLQLNGQLY-------- 58
           E+ +++I G+++  ++ L         P+    +DLI+ DPP++ + + +          
Sbjct: 83  EFLNRLIYGDNLLAMQALLAGDPETGLPSMRGKIDLIYIDPPFDSKADYRTKIHLPSVDI 142

Query: 59  --RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
             +P      A +D+W   +  ++Y       L+  R +L   G L+V   +H    +  
Sbjct: 143 EQKPSVIEQFAYSDTWKDGT--KSYLEMLVPRLVLMRELLSEQGFLYVHIDWHIGHYVKV 200

Query: 117 MLQNLNFW--ILNDIVWRK--SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
           ++ ++       N+++ R+   N       ++    H+T+++ S +  A+   F     +
Sbjct: 201 IIDDIFGKDNFRNEVIVRRIKKNVQEYDTVKQINYGHDTILFYSKNQDARFKPFQRHNER 260

Query: 173 AANEDVQ---------------------MRSDWLIPICSGSERL--------RNKDGEKL 203
                                           W      G+ +           K   K+
Sbjct: 261 QERWHSFEAAGYRGGMDYELFGFKPRQGNHWRWSKDRADGAIKTGMLRPNPNTGKPEYKV 320

Query: 204 -----------------------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
                                  + T+K E LL  IL  S+    +I D F GSGT+GAV
Sbjct: 321 EASESEVRDTIWEDITAYSFQFNYQTEKNEDLLDLILEHSSSSNSVIADFFAGSGTTGAV 380

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRI 265
           A+KL R +I  ++ +    I  KR+
Sbjct: 381 AEKLGRKWIMCDLGKPACMITRKRL 405


>gi|83310259|ref|YP_420523.1| modification methylase DpnIIB [Magnetospirillum magneticum AMB-1]
 gi|82945100|dbj|BAE49964.1| Modification methylase DpnIIB [Magnetospirillum magneticum AMB-1]
          Length = 422

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/280 (18%), Positives = 100/280 (35%), Gaps = 34/280 (12%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G+S     V   L   +  L+  DPPY ++ +        +     + S     
Sbjct: 173 RHRLLCGDSTNATDVERLLAEATPHLMVTDPPYGVEYDPDW----RNQAGVSSTSRTGKV 228

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           + +    +  AW       L P    +V  S      +   L+  +F +   I+W K+  
Sbjct: 229 ANDDRADWREAW------ALFPGEVAYVWHSAIYTRTVADSLEANDFKLRAQIIWSKNRF 282

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +       +Q  HE   +A        +                 + W I          
Sbjct: 283 VLGRGDYHWQ--HEPCWYAVRKTGTGHWQ----------GARDQATIWTIG------NNG 324

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           ++D   +H TQKP   + R +++++  G+ + +PF GSGT+   A+   R    +E+   
Sbjct: 325 DEDEATVHGTQKPVECMRRPILNNSAEGEAVYEPFAGSGTTVIAAETTGRICFAMELNPA 384

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
           Y D+   R    Q L   +  +    R+   +A    V  
Sbjct: 385 YADVIVGRW---QKLTGQKAVLNGDGRSFEEIAAGKAVSA 421


>gi|292654957|ref|YP_003534854.1| CTAG modification methylase [Haloferax volcanii DS2]
 gi|291370416|gb|ADE02643.1| CTAG modification methylase [Haloferax volcanii DS2]
          Length = 364

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 65/281 (23%), Positives = 101/281 (35%), Gaps = 23/281 (8%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
           G++      L  +SV+L+   PPY  +++   L+      VDA  D+ D  ++FEA    
Sbjct: 10  GDAADT--GLADESVNLVVTSPPYPMIEMWDDLFSARDDAVDAALDAGDGDAAFEAMHEQ 67

Query: 85  TRAWLLACRRVLKPNGTLW------------VIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
             A      RVL P G                   Y N  R+ T L       L D VWR
Sbjct: 68  LDAVWDEVARVLAPGGVACVNVGDATRSLDGSFRQYPNHARVLTALGERGLTPLPDAVWR 127

Query: 133 KSNPMP---NFRGRRFQNAHETLIWASPSPKAKG----YTFNYDALKAANEDVQMRSDWL 185
           K           G    NA+ TL         KG    +    D    +    + R+ W 
Sbjct: 128 KPTNRLTKFMGSGTLPTNAYVTLEHEYVLVVRKGDPRSFPPGDDRRYESAFFWEERNRWF 187

Query: 186 IPICSGSERLRNKD-GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
             +   S   +  D G +      P  L  R++   +  GD + DPF G+GT+   A   
Sbjct: 188 SDLWEFSGTDQRLDSGARERSAAFPVELPLRLIRMYSVYGDTVFDPFVGTGTTTLAAMLA 247

Query: 245 RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
            R  +G ++  D +    +R+  +    + E+        E
Sbjct: 248 GRDSVGYDLDADLVLGFERRLDDLPERSHAEVERRLDAHRE 288


>gi|313143927|ref|ZP_07806120.1| DNA methylase [Helicobacter cinaedi CCUG 18818]
 gi|313128958|gb|EFR46575.1| DNA methylase [Helicobacter cinaedi CCUG 18818]
          Length = 149

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/131 (37%), Positives = 76/131 (58%), Gaps = 2/131 (1%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           + +G+  ++L ++  +S D+IFADPPY L  +G L      +V      WD+  + +  D
Sbjct: 21  LYQGDCNALLPQMK-ESFDVIFADPPYFLSNDG-LSIQSGKIVSVNKGEWDRGENIDEID 78

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F   W+   +  LKP G++ + G+YHNIF +G  LQ L+F ILN I W+K+NP PNF  
Sbjct: 79  RFNMEWISNAKIALKPTGSIMISGTYHNIFSLGRALQKLDFKILNIITWQKTNPPPNFSC 138

Query: 143 RRFQNAHETLI 153
           R   ++ E +I
Sbjct: 139 RYLTHSTEQII 149


>gi|14325741|dbj|BAB60644.1| DNA adenine modification methylase [Thermoplasma volcanium GSS1]
          Length = 703

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 61/325 (18%), Positives = 120/325 (36%), Gaps = 79/325 (24%)

Query: 18  EWKDKIIKGNSISVLEKL---------PA--KSVDLIFADPPYNLQLNGQLY-------- 58
           E+ +++I G+++  ++ L         P+    +DLI+ DPP++ + + +          
Sbjct: 105 EFLNRLIYGDNLLAMQALLAGDPETGLPSMRGKIDLIYIDPPFDSKADYRTKIHLPSVDI 164

Query: 59  --RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
             +P      A +D+W   +  ++Y       L+  R +L   G L+V   +H    +  
Sbjct: 165 EQKPSVIEQFAYSDTWKDGT--KSYLEMLVPRLVLMRELLSEQGFLYVHIDWHIGHYVKV 222

Query: 117 MLQNLNFW--ILNDIVWRK--SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
           ++ ++       N+++ R+   N       ++    H+T+++ S +  A+   F     +
Sbjct: 223 IIDDIFGKDNFRNEVIVRRIKKNVQEYDTVKQINYGHDTILFYSKNQDARFKPFQRHNER 282

Query: 173 AANEDVQ---------------------MRSDWLIPICSGSERL--------RNKDGEKL 203
                                           W      G+ +           K   K+
Sbjct: 283 QERWHSFEAAGYRGGMDYELFGFKPRQGNHWRWSKDRADGAIKTGMLRPNPNTGKPEYKV 342

Query: 204 -----------------------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
                                  + T+K E LL  IL  S+    +I D F GSGT+GAV
Sbjct: 343 EASESEVRDTIWEDITAYSFQFNYQTEKNEDLLDLILEHSSSSNSVIADFFAGSGTTGAV 402

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRI 265
           A+KL R +I  ++ +    I  KR+
Sbjct: 403 AEKLGRKWIMCDLGKPACMITRKRL 427


>gi|85703053|ref|ZP_01034157.1| DNA methylase N-4/N-6 [Roseovarius sp. 217]
 gi|85671981|gb|EAQ26838.1| DNA methylase N-4/N-6 [Roseovarius sp. 217]
          Length = 426

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 96/257 (37%), Gaps = 34/257 (13%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +++ G++     V   L      L+  DPPY +  +        +   A          
Sbjct: 179 HRLLCGDATSAADVARLLGDVRPHLMVTDPPYGVMYDPDW----RNRAGASETKRTGKVL 234

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            +    +  AW       L P    +V     +   +   L    F I + I+W K   +
Sbjct: 235 NDDRADWRAAW------ALFPGDVAYVWHGALHATTVAESLVASGFDIRSQIIWAKDRHV 288

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
            +     +Q  HE   +A              A    + D +  + W IP        R+
Sbjct: 289 LSRGHYHWQ--HEPAWYAVR------------AKGHWSGDRKQSTLWSIP-------NRD 327

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           +D E  H TQKP   + R +++++ PG +I +PF GSGT+   A+  +R    IE+   Y
Sbjct: 328 QDAETSHGTQKPVECMRRPILNNSSPGQVIYEPFCGSGTTLIAAQSAKRIGFAIELDPTY 387

Query: 258 IDIATKRIASVQPLGNI 274
           +D+A  R  +      +
Sbjct: 388 VDVAVLRWQAFTDQDAV 404


>gi|119509284|ref|ZP_01628434.1| DNA methylase N-4/N-6 [Nodularia spumigena CCY9414]
 gi|119466126|gb|EAW47013.1| DNA methylase N-4/N-6 [Nodularia spumigena CCY9414]
          Length = 882

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 66/321 (20%), Positives = 122/321 (38%), Gaps = 75/321 (23%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLN----------------------GQLYRPD 61
             GNS++++ +LP +SVDLI   PP+ L                          ++ +P 
Sbjct: 27  YLGNSLALMAELPNESVDLICTSPPFALVRKKEYGNVDACEYIEWFKKFAIQFYRILKPQ 86

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS--YHNIF------- 112
            SLV  +  +W K     +   F    +  C+   K     ++     ++N         
Sbjct: 87  GSLVVDIGGTWHKGVPVRSLYHF-ELVVELCKPKSKGGLGFYLAQELFWYNPAKLPTPAE 145

Query: 113 -------RIGTMLQNLNFWILNDIVWRKSN-----PMPNFRGRRFQNAHETLIWASPSPK 160
                  R+   + N  +W+  D   + +N     P  +      +N +E  +  S    
Sbjct: 146 WVTVRRERVKDAV-NTVWWLSKDPHPKANNKRVLRPYSDAMKNLLKNGYEAKLRPSGHDI 204

Query: 161 AKGYTFNYDALKAAN--------------------EDVQMRSDWLIPICSGS-------- 192
           +  +  +       N                     +  + +D + P+   S        
Sbjct: 205 STKFKNDRGGAIPPNIIIDSEFGSSTLIGKPVLGEFNWILENDMVQPVNVISASNTASND 264

Query: 193 --ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
             +R   ++G K HP + P+AL   ++   T+PGD++LDPF GS T+G VA+ L R ++ 
Sbjct: 265 YYQRRCKEEGVKPHPARFPQALPEFVIGLCTEPGDLVLDPFAGSNTTGRVAETLDRRWLA 324

Query: 251 IEMKQDYIDIATKRIASVQPL 271
            E+ ++YI  +  R  +  PL
Sbjct: 325 FELDENYIQTSQFRFENDAPL 345


>gi|167630912|ref|YP_001681411.1| DNA methylase [Heliobacterium modesticaldum Ice1]
 gi|167593652|gb|ABZ85400.1| DNA methylase [Heliobacterium modesticaldum Ice1]
          Length = 432

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 82/262 (31%), Gaps = 32/262 (12%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +++ G+S       + +      +    PPY +    +          A  + W     
Sbjct: 171 HRLMCGDSTSEEDFEKLMNGGHAQMAVTSPPYGVGKEYE---------KAGIEPW----- 216

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGS--------YHNIFRIGTMLQNLNFWILNDI 129
           FE      R        V    G L+  GS        Y     +    + +   I    
Sbjct: 217 FETVRPVIRNLCRRADIVCWNLGDLYATGSQFIEPTSVYSVNMFLDNGFRPIWIRIWKKQ 276

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP-- 187
                    +    +    +E +   S + +A+ Y        +A      +    +   
Sbjct: 277 GQNFGVGPYHLVSNKPVQQYEYISAFSKNGEAEEYNDQEYVWLSAFAGHSYKFVKRLTKE 336

Query: 188 -----ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
                  +G   +      K HP   P  L  R +   +  G I+L+PF GSGT+   A+
Sbjct: 337 ERKKWGYAGIWEMTTVRANKEHPAMFPVELPWRCIKMHSDKGGIVLEPFSGSGTTIIAAE 396

Query: 243 KLRRSFIGIEMKQDYIDIATKR 264
           +  R    +E+   Y D+A KR
Sbjct: 397 QTERKCYAMELSPVYCDLAVKR 418


>gi|120609261|ref|YP_968939.1| DNA methylase N-4/N-6 domain-containing protein [Acidovorax
           citrulli AAC00-1]
 gi|120587725|gb|ABM31165.1| DNA methylase N-4/N-6 domain protein [Acidovorax citrulli AAC00-1]
          Length = 323

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 67/319 (21%), Positives = 111/319 (34%), Gaps = 86/319 (26%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDL--IFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           W D    G+   +L ++ A  V +      PPY      + Y PDH             S
Sbjct: 8   WLDTTHAGDCRVLLSRMLADGVQVQTCITSPPYF---GLRCYLPDHHPDKH--REIGCGS 62

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN-------------------------- 110
           + E Y A         RR+L  +GTLW++                               
Sbjct: 63  TPEQYVAQLVEVFQIVRRLLADDGTLWIVIGDSYAANGASGLNTGWAERSRRYAGGGRRA 122

Query: 111 -----------------------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
                                   + +   L+   +++  +++W K NPMP     R   
Sbjct: 123 AQARNRTRKSVPAGLKAKDLIGVPWMLAFALRRDGWYLRQEVIWHKPNPMPESVTDRCTR 182

Query: 148 AHETLIWASPSPKAKGYTFNYDALKAA-------------------NEDVQMRSDWLIPI 188
           AHE++   S       Y F+  A+                      +  VQ +++  +P 
Sbjct: 183 AHESVFLLSKRA---RYYFDVQAIAEPVAPSTVLRLSQPRLAQQSGSTRVQGKTNGNMPT 239

Query: 189 C--------SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
                         +  +     H    P AL+   +++ ++ GD++LDPF GSGT+G  
Sbjct: 240 VGCLDMRRRRSVWTIATRANRGPHNATYPAALIGPCILAGSRAGDVVLDPFMGSGTTGTT 299

Query: 241 AKKLRRSFIGIEMKQDYID 259
           A +LRR F+G E+ + YID
Sbjct: 300 ALRLRRHFVGCELVRSYID 318


>gi|152982005|ref|YP_001354446.1| phage related DNA methyltransferase [Janthinobacterium sp.
           Marseille]
 gi|151282082|gb|ABR90492.1| phage related DNA methyltransferase [Janthinobacterium sp.
           Marseille]
          Length = 474

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 99/302 (32%), Gaps = 53/302 (17%)

Query: 21  DKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            ++I G++     V   +   +  L F  PPY  Q +                       
Sbjct: 180 HRLICGDATDPAVVATLMQGDTAQLCFTSPPYGNQRDYTSG------------------G 221

Query: 78  FEAYDAFTRAWLLAC-----RRVLKPNGTLWVIGSYHNIFR-IGTMLQNLNFWILNDIVW 131
              +DA  R            +VL   G +         +    + +++  +      VW
Sbjct: 222 IADWDALMRGVFAHLPMAGDGQVLINLGLIHRDNEVIPYWDGWLSWMRSQGWRRFAWYVW 281

Query: 132 RKSNPMPNFRGRRFQNAHETLIWAS-------PSPKAKGYTFNYDALKAANEDVQMRSDW 184
            +   MP     R   + E +   +            K            +       D 
Sbjct: 282 DQGPGMPGDWQGRLAPSFEFVFHFNRSTRKPNKIVPCKHAGQESHLRADGSSTAMRGKDG 341

Query: 185 LIPICSGS----------------ERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDII 227
            +   +                   R + K G+ + HP   P AL    + + T+ GDI+
Sbjct: 342 EVGGWTHKGQPTQDTRIPDSVIRVMRHKGKIGQDIDHPAVFPVALPEFAIEAYTEAGDIV 401

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
            +PF GSGT+   A++  R    +E+  +Y+D+A KR     P   + +T+L   ++  +
Sbjct: 402 FEPFGGSGTTMLAAQRTGRLCRSMEIAPEYVDVAIKRFQQNHP--GVPVTLLATGQSFEQ 459

Query: 288 VA 289
           VA
Sbjct: 460 VA 461


>gi|228924788|ref|ZP_04087951.1| DNA methylase N-4/N-6 [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228834891|gb|EEM80367.1| DNA methylase N-4/N-6 [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 301

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 62/308 (20%), Positives = 100/308 (32%), Gaps = 95/308 (30%)

Query: 43  IFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL 102
           +   PPY    +             V          E Y +   +     +RVL+ +GTL
Sbjct: 1   MVTSPPYWGLRDY-----------GVDGQIGLEEKVEEYVSNLVSVFREVKRVLRDDGTL 49

Query: 103 WVIGSYHN-----------------------------------------------IFRIG 115
           W+                                                      +R+ 
Sbjct: 50  WLNLGDAYAGSGRGRNADGKGNPGNNHFQSVGQVTGIVSVTKSVDGLKPKDLIGLPWRVA 109

Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA----- 170
             LQ   +++  DIVW K N MP     R   +HE +   S SP    Y +++++     
Sbjct: 110 FALQQDGWYLRQDIVWNKPNAMPESVRDRPTKSHEYIFLLSKSP---KYYYDHESIKEPA 166

Query: 171 -----------------------------LKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
                                                  R+            +  K  +
Sbjct: 167 VYGQQDVRGSEGAFGPPQRAKRENKEKGSFNGKYGHEAFRAIRDKRNKRSVWTVSTKPLK 226

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           + H    PEAL+   +++      I++DPFFGSGT G VA K  R+FIGIE+   YI+I+
Sbjct: 227 EAHFATFPEALIEPCILAGAPAEGIVMDPFFGSGTVGRVAAKHNRNFIGIELNPGYIEIS 286

Query: 262 TKRIASVQ 269
            + +++VQ
Sbjct: 287 DRLLSNVQ 294


>gi|229551578|ref|ZP_04440303.1| probable site-specific DNA-methyltransferase [Lactobacillus
           rhamnosus LMS2-1]
 gi|229315043|gb|EEN81016.1| probable site-specific DNA-methyltransferase [Lactobacillus
           rhamnosus LMS2-1]
          Length = 244

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 60/260 (23%), Positives = 90/260 (34%), Gaps = 49/260 (18%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           +  LP  S+D+I  D PY    N                +WDK   FE            
Sbjct: 1   MADLPTASIDMILCDLPYGTTAN----------------AWDKVIPFEYL-------WGQ 37

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
             R++KP GT+ +  +    F    +  N   +    +  + +         R  +  E 
Sbjct: 38  YERLIKPQGTIVL--TATERFSADLVQSNPALYRYKWVWIKNTVTNFVNAKNRPLSRFEE 95

Query: 152 LIWASPS--------PKAKGYTF--------NYDALKAANEDVQMRSDWLIPICSGSERL 195
           ++  S S        P  KG  +        N        E       W  P     E  
Sbjct: 96  ILVFSKSGTANFGNSPDTKGMNYFPQGLLPYNKTVNSRKYERANQLHPWNAPDSYTQEWT 155

Query: 196 --------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                      +    HPTQKP  L + ++ + T+PG+I+LD   GSGT+   A    R 
Sbjct: 156 NYPADVLSYKSERTGWHPTQKPVDLFAYLIKTYTQPGEIVLDNCMGSGTTAIAAMDTNRH 215

Query: 248 FIGIEMKQDYIDIATKRIAS 267
           FIG E+ ++Y   A  RI  
Sbjct: 216 FIGYELSEEYWRRANDRIKQ 235


>gi|224538181|ref|ZP_03678720.1| hypothetical protein BACCELL_03072 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520203|gb|EEF89308.1| hypothetical protein BACCELL_03072 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 327

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 102/298 (34%), Gaps = 67/298 (22%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+S++++ +L   SV L+   PP+ L    +    D                 + Y 
Sbjct: 14  VYCGDSLNLITQLEDDSVSLVITSPPFALLRKKEYGNKDQ----------------DEYI 57

Query: 83  AFTRAWLLACRRVLKPNGTLW-----------VIGSYHNIFRIGTMLQNLNFWILNDIVW 131
            +   +  A    LK +G+L             I S +N   +    + L + +  +  W
Sbjct: 58  EWLAEFAKALLPKLKEDGSLVIDLGGAYEKGKPIRSLYNFKVLIHFCEVLGYHLAEEFYW 117

Query: 132 RKSNPMPNF------RGRRFQNAHETLIWASPSPKAK----------------------G 163
              + +P+       R  R +++  T+ W S S   K                       
Sbjct: 118 YNPSKLPSPIEWVNKRKMRAKDSVNTVWWFSKSDFPKSDVTKVLTPYSDRMKKLLDNPEK 177

Query: 164 YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE------------KLHPTQKPEA 211
           Y    +     N      SD    I S   ++ N +              K HP + P  
Sbjct: 178 YYQAKERPSGHNISTSFGSDNGGAIPSNLLQISNSESNSKYLTYCKKLNIKSHPARFPTK 237

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           L    +   T   D+++D F GS T+G V   L R ++G E+ ++Y+  +  R    +
Sbjct: 238 LPEFFVNMLTDENDLVVDIFAGSCTTGEVCDNLHRRWLGFELDRNYVANSIFRFIPAE 295


>gi|83309462|ref|YP_419726.1| modification methylase DpnIIB [Magnetospirillum magneticum AMB-1]
 gi|82944303|dbj|BAE49167.1| Modification methylase DpnIIB [Magnetospirillum magneticum AMB-1]
          Length = 423

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/280 (19%), Positives = 99/280 (35%), Gaps = 34/280 (12%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +++ G+S     V   L      L+  DPPY ++ + +          A T       +
Sbjct: 175 HRLLCGDSTVVTDVDRLLAGAKPHLMVTDPPYGVEYDPEWRNQAGVSSSARTGK----VA 230

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            +    ++ AW       L P    +V  +      +   L+  +F I   I+W K+  +
Sbjct: 231 NDDRADWSEAW------ALFPGEVAYVWHAAIFAKTVADSLEANDFKIRAQIIWSKNRFV 284

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                  +Q  HE  I+A        +                 + W I          +
Sbjct: 285 LGRGDYHWQ--HEPCIYAVRKNATGHWQ----------GARDQATIWAIG------NNGD 326

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           +D   +H TQKP   + R +++++  GD + +PF GSGT+   A+   R    +E+   Y
Sbjct: 327 EDEATVHGTQKPVECMRRPILNNSAEGDSVYEPFAGSGTTVIAAETTGRVCFALELNPAY 386

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERG 297
            D+   R   +     I   +    R    +A    V  G
Sbjct: 387 ADVTVGRWQKMTGQKAI---LDGDGRCFDDIAAGKAVSAG 423


>gi|193214766|ref|YP_001995965.1| DNA binding domain-containing protein [Chloroherpeton thalassium
           ATCC 35110]
 gi|193088243|gb|ACF13518.1| DNA binding domain protein, excisionase family [Chloroherpeton
           thalassium ATCC 35110]
          Length = 352

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 57/277 (20%), Positives = 104/277 (37%), Gaps = 31/277 (11%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
            +    +++ ++ ++ E   ++   +S S LE+L   S+ L+   PPY    N +LY   
Sbjct: 65  HRPQPASLSRSKITVDEVFIELFNKDS-SSLEELADDSIHLMVTSPPYF---NAKLY--- 117

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI----------GSYHN- 110
               + ++         + + +          RVL+P    ++           G Y   
Sbjct: 118 --AAEPISGDLGDIHDIDDWFSKIGHVWQEVFRVLQPGRKAFINIMNLPISLEDGKYRTL 175

Query: 111 --IFRIGTMLQNLNFWILNDIVWRKSNPM-------PNFRGRRFQNAHETLIWASPSPKA 161
             + R   + + + F    DIVW K+N +       P   G    N HE ++      + 
Sbjct: 176 NLVGRTIDVCEAIGFTFKRDIVWHKTNAVRAHFGTYPYPGGILINNMHEFILEFDKPERR 235

Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD--GEKLHPTQKPEALLSRILVS 219
               + +            +  WL    S    +  +     + H    P  L  RI+ +
Sbjct: 236 GARKYAHVTKDQREASKLDKEFWLSIKKSDVWVMAPEGSGNNRSHVAPFPYELPMRIIKA 295

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
            +  G+ ILDPF GSGT+   A  LRR+  G E+  +
Sbjct: 296 FSYVGERILDPFVGSGTTLCAAADLRRNSFGYEINPE 332


>gi|268683469|ref|ZP_06150331.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae SK-92-679]
 gi|268623753|gb|EEZ56153.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae SK-92-679]
          Length = 152

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 77/135 (57%), Gaps = 5/135 (3%)

Query: 23  IIKGNSISVLEKL----PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +   NS++V+ K+    P    D+IFADPPY L  +G     +  +V     +WDK    
Sbjct: 19  LYNENSLNVMRKILEKHPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGM 77

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            A   F   WL  C  +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP P
Sbjct: 78  AADLEFYEEWLRLCYALLKPNGTIWVCGTFHNIYLIGYLMQTVGYHILNNITWEKPNPPP 137

Query: 139 NFRGRRFQNAHETLI 153
           N   R F ++ ET++
Sbjct: 138 NLSCRFFTHSTETIL 152


>gi|113200567|ref|YP_717729.1| putative DNA methyl transferase [Synechococcus phage syn9]
 gi|76574466|gb|ABA47031.1| putative DNA methyl transferase [Synechococcus phage syn9]
          Length = 281

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 57/288 (19%), Positives = 97/288 (33%), Gaps = 59/288 (20%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +     + +  ++++ A+SVDL    PPY           D       +  WD       
Sbjct: 5   NTTHLMSCVDGMQQMDAESVDLCITSPPY-----------DDLRTYNDSSKWD------- 46

Query: 81  YDAFTRAWLLACRRVLKPNGTL-WVIGSYH-------NIFRIGTMLQNLNFWILNDIVWR 132
           ++ F +       RVLKP G + W +           + FR      + + + L+D +  
Sbjct: 47  FNVF-KDVAAGLARVLKPGGIIMWNVNDATVKGSETGSSFRQCLHFMDAHGFRLHDTMIY 105

Query: 133 KSNPMPNFRGRRFQNAHETLIWAS---------------PSPKAKGYT------------ 165
           +        G +     +   +                    K  GYT            
Sbjct: 106 EKTGTAFASGPKSVRYTQIFEYCFILSKGKPKTINLIQDKKNKWAGYTSFGNAVTRKKDG 165

Query: 166 -FNYDAL--KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK 222
            FN       A  E     + W I    G  +      +  HP   PE L    + + + 
Sbjct: 166 TFNDPGKKSNAIREWGVRTNIWKIKNSGGFGQSSKASYK--HPATMPEELARGHIQTWSN 223

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
            GD+I+DPF G+GT+  +  +  R+FIG E+   Y ++   R     P
Sbjct: 224 KGDLIIDPFMGAGTTAQMCIEEGRNFIGFEIDPTYHEMCLDRAKESTP 271


>gi|86211167|gb|ABC87269.1| M.NotI DNA methyltransferase [Nocardia otitidiscaviarum]
          Length = 353

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 61/298 (20%), Positives = 103/298 (34%), Gaps = 73/298 (24%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPD---------HSLVDAVTDSWDK 74
           +G++  +   L  +S+DLI   PPY  ++  G  +  D         +   D     W +
Sbjct: 58  QGDAYDLASGLDPQSIDLIITSPPYWGMRTYGHDHSEDVLDEWVAEGNHATDVPPYEWYR 117

Query: 75  FSS--------FEAYDAFTRAWLLACRRVLKPNGTLW----------------------- 103
                       E + +         R  LK  G++W                       
Sbjct: 118 EHGGLLGMEPIPEWFISHLVEIFERLRPALKLGGSVWVNLGDTYFARWSSIRSDGRQGLG 177

Query: 104 ---------VIGSYHN-------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
                     +G Y           R    +Q+  + + ND++W K N  P     R + 
Sbjct: 178 DNPRTRRKTPMGGYRQEKQLMLIPSRFAIAMQDKRWILRNDLIWHKPNVAPRPEKDRLRL 237

Query: 148 AHETLIWAS--PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
           AHE        P      Y ++  A++    DV   +               + G   H 
Sbjct: 238 AHEHFFHFVLRPKEGRAKYYYDTSAVEEGTRDVVTVNV--------------RSGSDGHS 283

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
              P  L+   + SS+  G ++LDPF G+G +  VA +L RS IG E+ +++   AT+
Sbjct: 284 ATFPPDLIRPRIESSSPVGGLVLDPFAGTGRALGVAAELGRSAIGFELSEEFTQAATR 341


>gi|299067592|emb|CBJ38796.1| putative Site-specific DNA-methyltransferase [Ralstonia
           solanacearum CMR15]
          Length = 466

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 54/310 (17%), Positives = 104/310 (33%), Gaps = 61/310 (19%)

Query: 21  DKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            ++I G++     +   +  +  DL F  PPY  Q                         
Sbjct: 174 HRLICGDATDAAVIAALMAGQHADLCFTSPPYANQRTYTTG------------------G 215

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI-------GTMLQNLNFWILNDIV 130
              +D   R        +      L  +G  H    +          ++   +      V
Sbjct: 216 IADWDVLMRGVFGNL-PMAGDGQVLVNLGLVHRDSEVVPYWDGWIGWMRTQGWRRFGWYV 274

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W +   MP     R   + E +   +  P+    T      K A +D  +R+D       
Sbjct: 275 WDQGPGMPGDWMGRLAPSFEFVFHFNREPRRPNKT---VPCKFAGQDEHLRADGTSTSMR 331

Query: 191 GSE--------------------------RLRNKDGEKL-HPTQKPEALLSRILVSSTKP 223
           G +                          R + K G+ + HP   P AL   ++ + +  
Sbjct: 332 GKDGVRGSWAHEGTVTQDTRIPDSVIRVMRHKGKIGKGIDHPAVFPVALPEFVIEAYSDA 391

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            D++ +PF GSGT+   A++  R    +E+  +Y+D+A KR    Q    + +T+ + ++
Sbjct: 392 SDVVFEPFGGSGTTMLAAQRTGRLCRSVEVAPEYVDVAIKRFQ--QNFPEVPVTLQSTRQ 449

Query: 284 TEPRVAFNLL 293
           +   V+   +
Sbjct: 450 SFEAVSAERM 459


>gi|328545669|ref|YP_004305778.1| ParB domain protein nuclease [polymorphum gilvum SL003B-26A1]
 gi|326415409|gb|ADZ72472.1| ParB domain protein nuclease [Polymorphum gilvum SL003B-26A1]
          Length = 492

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 95/262 (36%), Gaps = 38/262 (14%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNG--------------QLYRPDHS 63
            +++ G+SI    V+  +  +   L   DPPY +  +G              ++   D S
Sbjct: 215 HRLLCGDSISAKDVIRLMNGERAALFATDPPYLVDYDGTNHPTKKNASARAKKIANKDWS 274

Query: 64  LVDAVTDSWDKFS-SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                   WD  S   + Y+AF +  +      +K +   +   +      +       +
Sbjct: 275 DDYIEQKHWDDSSQGPQFYEAFMQVAIDCA---IKEDAAWYCWHASRRQAMLEACWSKFD 331

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
                 I+W KS P+          AHE  ++   S        N   +     +    +
Sbjct: 332 VLHHQQIIWAKSRPV--LTRSIMLWAHEPCLFGWRSG-------NKPRVNREGFENWPTT 382

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
            W IP         ++   + HPT KP  + +  +   T PG+I  +PF GSG+     +
Sbjct: 383 VWSIP--------SSEIETREHPTSKPVRVFTLPMELHTVPGEICYEPFSGSGSQIIAGE 434

Query: 243 KLRRSFIGIEMKQDYIDIATKR 264
           +  R   G+E+ + + D+   R
Sbjct: 435 RTGRRVYGLELSETFCDVIVNR 456


>gi|240013323|ref|ZP_04720236.1| putative modification methylase DpnIIB [Neisseria gonorrhoeae
           DGI18]
 gi|240120394|ref|ZP_04733356.1| putative modification methylase DpnIIB [Neisseria gonorrhoeae
           PID24-1]
 gi|240127400|ref|ZP_04740061.1| putative modification methylase DpnIIB [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268685774|ref|ZP_06152636.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|268626058|gb|EEZ58458.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
          Length = 161

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 77/135 (57%), Gaps = 5/135 (3%)

Query: 23  IIKGNSISVLEKL----PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +   NS++V+ K+    P    D+IFADPPY L  +G     +  +V     +WDK    
Sbjct: 28  LYNENSLNVMRKILEKHPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGM 86

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            A   F   WL  C  +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP P
Sbjct: 87  AADLEFYEEWLRLCYALLKPNGTIWVCGTFHNIYLIGYLMQTVGYHILNNITWEKPNPPP 146

Query: 139 NFRGRRFQNAHETLI 153
           N   R F ++ ET++
Sbjct: 147 NLSCRFFTHSTETIL 161


>gi|152981981|ref|YP_001354390.1| DNA modification methylase [Janthinobacterium sp. Marseille]
 gi|151282058|gb|ABR90468.1| DNA modification methylase [Janthinobacterium sp. Marseille]
          Length = 473

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/279 (17%), Positives = 89/279 (31%), Gaps = 41/279 (14%)

Query: 20  KDKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + ++I G++     +   +  +   L F  PPY  Q +                 WD   
Sbjct: 176 QHRLICGDAADPSVIASLMRGEQAKLCFTSPPYGNQRD---------YASGGITDWDGLM 226

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR-IGTMLQNLNFWILNDIVWRKSN 135
                  F    +    +VL   G +         +      ++   +      VW +  
Sbjct: 227 RG----VFGNVPMAEDAQVLVNLGLIHRDNEVIPYWDGWLGWMRTQGWRRFAWYVWDQGP 282

Query: 136 PMPNFRGRRFQNAHETLIWAS-------PSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
            MP     R   + E +   +            K    +       +       D  +  
Sbjct: 283 GMPGDWQGRLAPSFEFVFHFNRQNRKPNKIVPCKHAGQDSHLRADGSSTAMRGKDGEVGG 342

Query: 189 CSG----------------SERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPF 231
            +                   R + K G+ + HP   P AL   IL + +  GDI+ +PF
Sbjct: 343 WTHAGQPTQDKRIPDSVIRVMRHKGKIGQDIDHPAVFPVALPEFILDAYSDSGDIVFEPF 402

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
            GSGT+   A++  R    +E+  +Y+D+A KR     P
Sbjct: 403 GGSGTTMLAAERTGRRCRAVEIAPEYVDVAVKRFQQNFP 441


>gi|311741947|ref|ZP_07715757.1| DNA (cytosine-5-)-methyltransferase [Aeromicrobium marinum DSM
           15272]
 gi|311314440|gb|EFQ84347.1| DNA (cytosine-5-)-methyltransferase [Aeromicrobium marinum DSM
           15272]
          Length = 344

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 62/316 (19%), Positives = 93/316 (29%), Gaps = 75/316 (23%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLN----------------GQLYRPDHSLVDAV 68
            GN+  +L +LP  SVD +  DPPY +                   G    P   L    
Sbjct: 23  HGNAFDLLRELPDASVDAVVTDPPYGIATPPGLKALHGRQVTCRTCGDTTAPTWVLCQTC 82

Query: 69  TDSWDKFSSFE---------------------------AYDAFTRAWLLACRRVLKPNGT 101
            D        E                               +         RVLKP G 
Sbjct: 83  LDIQRDVLLTEPSMLGHVAPNAHTTGTHTRGLADCDPGLLQRWAELLGTQLLRVLKPGGH 142

Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
             + G+     R+ T L+N  F + + I W          G     +    +   P    
Sbjct: 143 ALLFGAPKTSHRVTTGLENAGFDVRDQITWIHQGAGARSTGILAVQSELIAVVRRPMIGT 202

Query: 162 KGYTFNYDALKAAN------------------------------EDVQMRSDWLIP--IC 189
           +    +       N                              + +   +    P  +C
Sbjct: 203 RAMNHDLFGTGVLNTAGAASLAELPTTPTNVVAGEPGPDVFARAQQMLHDTVAFPPAVVC 262

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
             + +         HPT KP AL+  ++  +T PG  +LDPF GSGT+   A    R  I
Sbjct: 263 KKATKGERTFTSGTHPTVKPLALMRYLVELATPPGGTVLDPFAGSGTTVEAAIVQGRPVI 322

Query: 250 GIEMKQDYIDIATKRI 265
             E    Y+ + T+RI
Sbjct: 323 AFEADSAYLPLITERI 338


>gi|124002990|ref|ZP_01687841.1| prophage LambdaSa04, DNA methylase [Microscilla marina ATCC 23134]
 gi|123991640|gb|EAY31048.1| prophage LambdaSa04, DNA methylase [Microscilla marina ATCC 23134]
          Length = 403

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 88/256 (34%), Gaps = 22/256 (8%)

Query: 20  KDKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQLN--GQLYRPDHSLVDAVTDSWDK 74
           K ++I G+S+  +  E L   +   ++  DPPYN+  +  G L +  H            
Sbjct: 129 KHRLICGDSLLAATFETLMNGTLARVLITDPPYNIPYSLFGGLGKVQHEDFSMAAGEMGD 188

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
               + +  F   ++    +        +    + + + +      +        V   +
Sbjct: 189 ----QEFVEFLATYMRHAVQHTVDGSIHYNFMDFRHAWHMCEAGGKVYGSREPKQVCVWN 244

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
             +    G  ++  HE                         +D    + W     +    
Sbjct: 245 KSI-QANGSFYRAKHEFCFIFKSGEAK-------HLSHLELKDRFRSNVWDYKSANDFSN 296

Query: 195 LRNKDGEKL-----HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
              K+  KL     HPT KP  +++  L+ +T  GDI LD F GSGT+    ++ RR   
Sbjct: 297 EERKEFGKLGALENHPTPKPVRMIADALLDTTNEGDIALDCFLGSGTTLMATERTRRICY 356

Query: 250 GIEMKQDYIDIATKRI 265
           G+E +  Y+     R 
Sbjct: 357 GVEYEPHYMQGILTRF 372


>gi|291087315|ref|ZP_06346093.2| DNA (cytosine-5-)-methyltransferase [Clostridium sp. M62/1]
 gi|291075350|gb|EFE12714.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. M62/1]
          Length = 276

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 57/270 (21%), Positives = 98/270 (36%), Gaps = 80/270 (29%)

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN----------------------- 110
           + ++ + Y +         RRVL+P+GTLW+  S                          
Sbjct: 7   RETTPKEYISRLTEVFTEVRRVLRPDGTLWLNISDTYAGKGNQGDFVDPKNPSGRNGQAV 66

Query: 111 -----------------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
                             + +   L++  +++ NDI+W K NPMP     R    +E + 
Sbjct: 67  ALNNKVEGCKPKDMIGIPWMLAFALRDTGWYLRNDIIWMKDNPMPESVKDRCARCYEHIF 126

Query: 154 WASPSPKAKGYTFNYDALKAA---------NEDVQMRSDWLIPIC--------------- 189
             S    +K Y F+Y A+               ++  + +  P+                
Sbjct: 127 LFSK---SKKYFFDYKAISEPIAPATAERLKRGMKGGNKYGKPVPGQPQPQSINRPREHG 183

Query: 190 -------------SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
                            ++     +  H    P  L+   L++    G I+LDPF GSGT
Sbjct: 184 EIKDADINPLRNKRDVWKINTVPFKGGHYAAYPPKLVETCLLAGCPEGGIVLDPFMGSGT 243

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           +G VA ++ R F+GIE+  +Y ++A KRI 
Sbjct: 244 TGMVASQMGRHFVGIELNPEYTELAYKRIG 273


>gi|23015918|ref|ZP_00055682.1| COG0863: DNA modification methylase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 418

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 49/258 (18%), Positives = 94/258 (36%), Gaps = 31/258 (12%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K +++ G+S     V   L      L+  DPPY ++ +        +     + +     
Sbjct: 172 KHRLLCGDSTVATDVDRLLVGAKPHLMVTDPPYGVEYD----PSWRNQAGVSSTTRTGKV 227

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           + +    ++ AW       L P    +V  +      +   L+  +F +   I+W K   
Sbjct: 228 ANDDRADWSEAW------ALFPGEVAYVWHAAIYAKTVADSLEANDFKVRAQIIWSKPRF 281

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +       +Q  HE  I+A        +                 + W I          
Sbjct: 282 VLGRGDYHWQ--HEPCIYAVRKNGTGHWQ----------GARDQATVWAIGSGG------ 323

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           ++D   +H TQKP   + R +++++  GD + +PF GSGT+   A+   R    +E+   
Sbjct: 324 DEDEATVHGTQKPVECMRRPILNNSAEGDAVYEPFTGSGTTVIAAETTGRVCFAMELNPA 383

Query: 257 YIDIATKRIASVQPLGNI 274
           Y+D+   R   +     I
Sbjct: 384 YVDVVIGRWQKLTGQKAI 401


>gi|119384800|ref|YP_915856.1| nuclease [Paracoccus denitrificans PD1222]
 gi|119374567|gb|ABL70160.1| ParB domain protein nuclease [Paracoccus denitrificans PD1222]
          Length = 463

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 53/283 (18%), Positives = 92/283 (32%), Gaps = 32/283 (11%)

Query: 21  DKIIKGNSI--SVLEKLPAKSVDLIF--ADPPYNLQLNGQLYRPDHSLVD-AVTDSWDKF 75
            +++ G+S     + +L       +    DPPY +  +G  +   +     +   +WD  
Sbjct: 181 HRLLCGDSTSHDDVRRLMNGE-RAVLFATDPPYLVDYDGSNHPTRNKDWSTSYGTTWDDS 239

Query: 76  S-SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
           S   E YD F  A L      +  N   +   +      +    +    ++   I+W K 
Sbjct: 240 SQGAELYDGFIAAALAEA---ITENAAWYCWHASRRQAMLEACWEKAGAFVHQQIIWVKD 296

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
             +       +   HE  +     P                 D  + S W +P  +  ER
Sbjct: 297 RGV--LTRSHYLWKHEPCLMGWRRPN----------RPPKVADQTLPSTWEMPSFARDER 344

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                    HPT KP       +      G +  +PF GSG+     +   R    +E+ 
Sbjct: 345 PD-------HPTPKPLDAFGIPMRQHVARGGLCYEPFCGSGSQIMAGEVNGRRVFAMEIS 397

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERG 297
             Y+D+A +R  +      I   +    RT   V    L E  
Sbjct: 398 PAYVDVAVERWQAETGKDAI---LDGDGRTFAEVKAERLGEHA 437


>gi|239908245|ref|YP_002954986.1| hypothetical protein DMR_36090 [Desulfovibrio magneticus RS-1]
 gi|239798111|dbj|BAH77100.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 221

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 91/244 (37%), Gaps = 33/244 (13%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           I+G+ +  + ++P  SV L+  DPPY         R + ++ +   +   +         
Sbjct: 5   IEGDCLEHIHEIPDGSVALLLTDPPYGCTFRSISDRTNRTIANDNPEDATRI-------- 56

Query: 84  FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
             +  L      +K +  + V      +     ++++  +      VW+KS+        
Sbjct: 57  -LKESLEQLYPKMKDDSYIVVFSGDKMLADFINIIKSAGYCYQGVAVWKKSHHTQGSLIS 115

Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
             +   E +I+A+                        +      IC   E    K+  + 
Sbjct: 116 GLRPITEKIIYATKG----------------------KPVLYDAICDHFEYPNTKN--EF 151

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           H T+KP  LL  ++ + T PGD ++D F GSG+S   AK + R++ G  +  D       
Sbjct: 152 HQTEKPAGLLRELIGAMTVPGDCVVDCFAGSGSSVVQAKAMGRNWWGCVLDPDDYQNGYM 211

Query: 264 RIAS 267
           R+  
Sbjct: 212 RLNE 215


>gi|302873930|ref|YP_003842563.1| DNA methylase N-4/N-6 domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307689819|ref|ZP_07632265.1| DNA methylase N-4/N-6 domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302576787|gb|ADL50799.1| DNA methylase N-4/N-6 domain protein [Clostridium cellulovorans
           743B]
          Length = 247

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 89/247 (36%), Gaps = 39/247 (15%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           L  +   S+DL+   PPYN+  +      D SL                Y+ F +     
Sbjct: 22  LNFILNNSLDLVITSPPYNIGTDYTGSSDDKSLYG--------------YETFIKNVFKE 67

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
           C   LK +              I  + +N+          +  + +    G    + H  
Sbjct: 68  CYEKLKMDAYC-----------IVNIPENIKTKNEVWYYPKIYSSILKNIGFSLISVHP- 115

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMR--SDWLIPICSGSERLRNKDGEK------- 202
             W   S   + +T          +D  +   ++W +     +++   K GE        
Sbjct: 116 --WFKLSLDGELFTSKKWEEGKVCKDSHVHSVTEWFMIFKKSNQKEEFKIGEGFTFTPYK 173

Query: 203 --LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
             LHP   P AL+  ++ +  +    +LDPF G  T+G    +  R FIG+++ +DYI I
Sbjct: 174 TPLHPAAWPVALIEELIKNYCQVEGKVLDPFAGICTTGLACVRNNRCFIGVDISKDYISI 233

Query: 261 ATKRIAS 267
            +K +  
Sbjct: 234 GSKLLNE 240


>gi|291546457|emb|CBL19565.1| DNA modification methylase [Ruminococcus sp. SR1/5]
          Length = 548

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 55/297 (18%), Positives = 100/297 (33%), Gaps = 51/297 (17%)

Query: 20  KDKIIKGNSI--SVLEKL-PAKSVDLIFADPPYNLQLNG---QLYRPDHSLVDAVTDSWD 73
           + ++I G+S     L+KL   +    +  DPPY + L+G      R    + +    + D
Sbjct: 205 QHRLICGDSTKPETLQKLLGDELAQCVNTDPPYGISLDGGGGNGKRQKQQIENNGMIAND 264

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           + +  +              +  KP+   ++  +          +          ++W K
Sbjct: 265 ELTDDDLLGKLLIPAFKNAVKYSKPDAAFYIYHATDTRRDFEDAMTAAGLLEKQYLIWLK 324

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN------------------ 175
           +N   N  G  +    E + +A  +     +  +                          
Sbjct: 325 NN--HNLSGTDYLRDFEPMFYAEKAGHTAKWCGDRSNNTCWKITLRDDAGMATTLSGGIV 382

Query: 176 ------------------------EDVQMRSDWLIPICS-GSERLRNKDGEKLHPTQKPE 210
                                      + +S +L P    G+     +D    HPTQKP 
Sbjct: 383 VTDGAGGKAFISDKVPKGKKIRYLRLQEDKSVFLYPEDKQGAVWEVARDTATFHPTQKPV 442

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            L +R +++S+ PGDIILD F GSG +   A+   R    +E+   Y D   +R  S
Sbjct: 443 ELATRAILNSSDPGDIILDLFGGSGFTLIGAEMTERQARLVELSPTYCDGIIRRYVS 499


>gi|261819793|ref|YP_003257899.1| DNA methylase N-4/N-6 [Pectobacterium wasabiae WPP163]
 gi|261603806|gb|ACX86292.1| DNA methylase N-4/N-6 domain protein [Pectobacterium wasabiae
           WPP163]
          Length = 329

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 63/314 (20%), Positives = 115/314 (36%), Gaps = 71/314 (22%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
              +S+ +LE +P  S++L+   PP+ LQ   +    D                 E Y  
Sbjct: 18  YIADSLEMLEAVPDSSLNLVMTSPPFALQRKKEYGNHDQ----------------EQYID 61

Query: 84  FTRAWLLACRRVLKPNGTLW-----------VIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           +   +     + LK +G+              + S +N   +  M+  + F +  D  W 
Sbjct: 62  WFLKFGELVFKKLKDDGSFVVDFGGSYMKGVPVRSVYNFRVMIRMIDEIGFHLAEDFYWF 121

Query: 133 KSNPMPNF------RGRRFQNAHETLIWASPSPKAK----------------------GY 164
             + +P+       R  R +++  T+ W S +   K                       Y
Sbjct: 122 NPSKLPSPIEWVNKRKLRVKDSVNTVWWFSKTEWPKSDVTKVLVPYSDRMKKLIEDPNKY 181

Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRN------------KDGEKLHPTQKPEAL 212
                     +       D    I S   ++ N            K G K HP + P  L
Sbjct: 182 YSPKMRPSGHDISSSFGKDNGGAIPSNLLQIPNSESNGGYLSGCKKIGIKGHPARFPSKL 241

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI----ASV 268
               +   T+PGD+++D F GS T+G++A+KL R ++  E+  +Y+  +  R      S 
Sbjct: 242 PEFFINMLTEPGDLVVDIFGGSNTTGSIAEKLNRKWLSFELSPEYVAASVFRFTSKNTSS 301

Query: 269 QPLGNIELTVLTGK 282
           + L N+  ++L G+
Sbjct: 302 EKLQNMYDSILNGE 315


>gi|260577043|ref|ZP_05845022.1| ParB domain protein nuclease [Rhodobacter sp. SW2]
 gi|259020713|gb|EEW24030.1| ParB domain protein nuclease [Rhodobacter sp. SW2]
          Length = 443

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 91/267 (34%), Gaps = 33/267 (12%)

Query: 20  KDKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K ++  G++     V   +  +   L+F  PPY  Q +    +           +WD   
Sbjct: 173 KHRLCCGDATDPAVVARLMQGEQATLMFTSPPYAQQRDYGAAKEK-------VGNWDALM 225

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR-IGTMLQNLNFWILNDIVWRKSN 135
                  F  A + A  ++L   G +     +   +      ++   +      VW +  
Sbjct: 226 QG----VFATAPVTAEAQLLVNLGLVHRDSEWQPYWEGWVEWMRASGWRRFGWYVWDQGP 281

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYT--------------FNYDALKAANEDVQMR 181
            +P     R   +HE +   + +P+    T                        +     
Sbjct: 282 GLPGDWNGRLAPSHEFIFHFNRAPRKPHKTVPSKHAGETLGGGGLRGADGTVHAKTGTGN 341

Query: 182 SDWLIPICSGSERLRNKDG----EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           +     I     R+    G       HP   P AL+  +L + + PGD+I +PF GSGT 
Sbjct: 342 AIQSHRIPDSVFRIMRHKGGLGAAGSHPAVFPVALVEAVLTAFSDPGDLIYEPFCGSGTQ 401

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKR 264
              A++  R    +EM   Y D+A +R
Sbjct: 402 IIAAERAGRLCFAMEMDPVYCDVAVRR 428


>gi|257081772|ref|ZP_05576133.1| LlaDCHIB [Enterococcus faecalis E1Sol]
 gi|256989802|gb|EEU77104.1| LlaDCHIB [Enterococcus faecalis E1Sol]
          Length = 214

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 49/239 (20%), Positives = 95/239 (39%), Gaps = 26/239 (10%)

Query: 42  LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
           ++  DPPY L   G+          +  +  +  ++      F R  L    RV+K    
Sbjct: 1   MVIIDPPY-LMKQGKSGGAFGRDKRSYHNEIESMTN-----DFERKVLDELVRVMKKIN- 53

Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
           L+V  S   +             + + + W K+NP+P   G+   +    L +     K 
Sbjct: 54  LYVWCSKDQLQGYINYFSQKGCTL-DLLTWHKTNPVPTCNGKYLSDTEYLLFFKEKGVKV 112

Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
            G                 +  + +   +  ++   +     HPT KP  ++  ++++S+
Sbjct: 113 FG-------------SYSTKKKFYVTPTNKKDKDLYQ-----HPTVKPLNIIENLVINSS 154

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
           +  +++LD F GSGT+   A    R FIG E +++Y D+A +RI  V    + +   + 
Sbjct: 155 QENEVVLDCFIGSGTTAVAAINTNRQFIGFEKEKEYFDVAIERIEKVSEEDDSKNRSMD 213


>gi|116327802|ref|YP_797522.1| DNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116120546|gb|ABJ78589.1| DNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis L550]
          Length = 360

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 123/337 (36%), Gaps = 36/337 (10%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            +I   +S  +   L ++SVDL+   PPY  +++  +L+      +     + D   S+E
Sbjct: 6   HRIQFRDSRKMFP-LKSESVDLVLTSPPYPMIEMWDELFFGFSKEIQENFPT-DPNLSYE 63

Query: 80  AYDAFTRAWLLACRRVLKPNGTLW-VIGS-----------YHNIFRIGTMLQNLNFWILN 127
                         RVLK  G L   IG            Y N  RI     ++ F  L 
Sbjct: 64  RIHIELDKVWKESFRVLKNGGFLVINIGDATRNTSAGFQIYMNHARILQGCNSIGFQSLP 123

Query: 128 DIVWRKSNPMPN--------FRGRRFQNAHETLIWASPSPKAKGYTF-NYDALKAANEDV 178
            I+WRK    PN          G      HE ++    S K K  T     A   +    
Sbjct: 124 GILWRKQTNSPNKFMGSGMLPAGAYVTLEHEHILIFRKSNKRKFVTKAEQFARAQSAFFW 183

Query: 179 QMRSDWLIPIC--SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
           + R+ W   +    G ++  N    +      P  L +RI++  +  GD++LDPF+G+GT
Sbjct: 184 EERNLWFTDLWDFKGKKQSLNPLTGRDRSAAYPLELANRIILMYSLKGDVVLDPFWGTGT 243

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDI----------ATKRIASVQPLGNIELTVLTGKRTEP 286
           +   A    R+ IG ++                 +  RI   +   +           +P
Sbjct: 244 TTLAAIGNCRNSIGFDLNPGLFQTHFENLSSLGESLNRIVEKRKRDHDLFVQTRQNEGKP 303

Query: 287 RVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
            + FN  ++  ++   +   N +  I     +D  ++
Sbjct: 304 LLHFNQNLQTPVVTKQEKFLNLEKIIGLLRNSDEEIV 340


>gi|222112382|ref|YP_002554646.1| DNA methylase n-4/n-6 domain-containing protein [Acidovorax ebreus
           TPSY]
 gi|221731826|gb|ACM34646.1| DNA methylase N-4/N-6 domain protein [Acidovorax ebreus TPSY]
          Length = 471

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 56/297 (18%), Positives = 98/297 (32%), Gaps = 43/297 (14%)

Query: 21  DKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            ++I G++     V   +  +   L F  PPY  Q +                 WD    
Sbjct: 177 HRLICGDATDRDVVAALMQGEVSRLCFTSPPYGNQRDYT---------SGGISDWDGLMR 227

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR-IGTMLQNLNFWILNDIVWRKSNP 136
                 F    +    +VL   G +         +      ++   +      VW +   
Sbjct: 228 G----VFAHLPMAGDGQVLINLGLIHRDNEVIPYWDGWLAWMRQQGWRRFAWYVWDQGPG 283

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKG----------------------YTFNYDALKAA 174
           MP     R   + E +   +   +                                +   
Sbjct: 284 MPGDWQGRLAPSFEFVFHFNRESRKPNKIVLCKHAGQESHLRADGSSTAMRGKDGEVGGW 343

Query: 175 NEDVQMRSDWLIPICSG-SERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFF 232
               Q   D  IP       R + K G+ + HP   P AL   ++ + T  GDI+ DPF 
Sbjct: 344 THKGQPTQDTRIPDSVIRVMRHKGKIGQDIDHPAVFPVALPEFVIEAYTDAGDIVFDPFG 403

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
           GSGT+   A++  R    +E+  +Y+D+A KR     P   + +T++   ++  +VA
Sbjct: 404 GSGTTMLAAERTGRVCRSVEIASEYVDVAIKRFQQNHP--GVPVTLIATGQSFEQVA 458


>gi|257440144|ref|ZP_05615899.1| DNA (cytosine-5-)-methyltransferase [Faecalibacterium prausnitzii
           A2-165]
 gi|257197496|gb|EEU95780.1| DNA (cytosine-5-)-methyltransferase [Faecalibacterium prausnitzii
           A2-165]
          Length = 276

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 58/270 (21%), Positives = 96/270 (35%), Gaps = 80/270 (29%)

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLW--------------VIGSYHNI-------- 111
           + ++ + Y +         RRVL+P+GTLW                    N         
Sbjct: 7   RETTPKEYISRLTEVFTEVRRVLRPDGTLWLNISDTYAGKGNQGDFIDPKNPNGRNGQAV 66

Query: 112 ------------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
                             + +   L++  +++ NDI+W K NPMP     R    +E + 
Sbjct: 67  ALNNKVEGCKPKDMIGIPWMLAFALRDTGWYLRNDIIWMKENPMPESVKDRLSRCYEHIF 126

Query: 154 WASPSPKAKGYTFNYDALKAA---------NEDVQMRSDWLIPIC--------------- 189
             S    +K Y F+Y A+               ++  + +  P+                
Sbjct: 127 LFSK---SKKYFFDYKAISEPIAPATAERLKRGMKGGNKYGKPVPGQPQPQSINRPREHG 183

Query: 190 -------------SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
                            ++     +  H    P  L+   L++    G I+LDPF GSGT
Sbjct: 184 EIKDADINPLRNKRDVWKINTVPFKGGHYAAYPPKLVETCLLAGCPEGGIVLDPFMGSGT 243

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           +G VA ++ R FIGIE+   Y ++A KRI 
Sbjct: 244 TGMVASQMGRHFIGIELNPAYTELAYKRIG 273


>gi|186472281|ref|YP_001859623.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           phymatum STM815]
 gi|184194613|gb|ACC72577.1| DNA methylase N-4/N-6 domain protein [Burkholderia phymatum STM815]
          Length = 374

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 92/273 (33%), Gaps = 34/273 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNL----QLNGQLYRPDHSLVDAVTDSWDKF-- 75
            + +G+    L      SV  +  DPPY L           R     V  +  S+D    
Sbjct: 89  TLHQGDCFEWLASQKPSSVHAVVTDPPYGLVEYTAKETAKLRAGKGGVWRIPPSFDGHQR 148

Query: 76  -----------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
                      +  +A  AF + +     RV  P   + +  +      +   +      
Sbjct: 149 APLPRFTVLTDTDRQALHAFFKRFGTLIGRVAVPGANVVIASNPLLAHIVAEAMGLAGLE 208

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF-------------NYDAL 171
           +   I  +    M    G R +NAHE     S  P+++   +             N    
Sbjct: 209 LRGYIARQV---MTMRGGDRPKNAHEEFDGVSVMPRSQWEPWVVLRKPLEGRVQDNLRRW 265

Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK-PGDIILDP 230
                    +      +        ++     HP+ KP+A + +I+ +       I+LDP
Sbjct: 266 GTGGFRRPSKERPFGDLIKSHPTPASEKKIAPHPSLKPQAFMRQIVRAVLPLEEGIVLDP 325

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           F G+G++ A A  +     G+E+ +++  +A K
Sbjct: 326 FMGAGSTLAAANAVGYQSCGVELDEEFFALAAK 358


>gi|300114273|ref|YP_003760848.1| DNA methylase N-4/N-6 domain-containing protein [Nitrosococcus
           watsonii C-113]
 gi|299540210|gb|ADJ28527.1| DNA methylase N-4/N-6 domain protein [Nitrosococcus watsonii C-113]
          Length = 1013

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 74/385 (19%), Positives = 132/385 (34%), Gaps = 95/385 (24%)

Query: 5   NSLAINENQNSIFEWKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYR 59
           +  A  E       W +++I G+S+ V+  L         V  I+ DPPY ++ N     
Sbjct: 120 DEAAKTEFYQHEAHWSNRMILGDSLQVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQW 179

Query: 60  PDHSL----------------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW 103
              S                 V A  D+W       +Y  + R  L   R +L  +G+++
Sbjct: 180 STTSRDVKDGNVQHITREPEQVKAFRDTW--RDGIHSYLTYLRDRLTVARDLLTDSGSIF 237

Query: 104 VIGSYHNIFRIGTMLQNLNFW--ILNDIVWRKSNPMPN-----------FRGRRFQNAHE 150
           V     N+ R+  ++  +      +++IV++K+   P            +  +R QNA  
Sbjct: 238 VQIGDENVHRVRALMDEVFGDVNFVSEIVFQKTGSQPGSIIGNISDYILWFAKRKQNAKV 297

Query: 151 TLIWASPSP-----------------------KAKGYTFNYDALKAA------------- 174
             I+                              +G  F+                    
Sbjct: 298 RNIFLPKDGGEGDFSPDPLTSDGASEKGTANFYFQGQIFHPGKKAHWKTTLGGMEILARA 357

Query: 175 ------NEDVQMRSDWLIPICSGSERLRNKDG---EKLHPTQKPEALLSRILVSSTKPGD 225
                  + +++R  W+         +    G     ++  Q  E +  R L+ ST PGD
Sbjct: 358 GRIIKQRKQIRLRKYWVDNPVKTLTNIWTDSGGASNVIYVVQTNEKIPQRCLLMSTDPGD 417

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI--------------ASVQPL 271
           ++LDP  GSGT+  VA++  R +I I+  +  + +A  RI                V   
Sbjct: 418 LVLDPTCGSGTTAYVAEQWGRRWITIDTSRVALALARSRIMGARYPYYLLVDSKEGVLKE 477

Query: 272 GNIELTVLTGKRTEPRVAFNLLVER 296
             I  T  + K T   + +  + ER
Sbjct: 478 AEITRTAPSTKPTTENIRYGFVYER 502


>gi|323344838|ref|ZP_08085062.1| DNA methylase N-4/N-6 [Prevotella oralis ATCC 33269]
 gi|323094108|gb|EFZ36685.1| DNA methylase N-4/N-6 [Prevotella oralis ATCC 33269]
          Length = 193

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 33/187 (17%)

Query: 111 IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
            + +   L+ L  ++  DI+W K+N MP     R   +HE +   S    +K Y F+++A
Sbjct: 5   PWMLAFSLRPLGCYLRQDIIWNKTNAMPESVKDRCTRSHEYIFLLSK---SKTYYFDHEA 61

Query: 171 LKAANEDVQMRSDWLI-------PICSGSERLRNKDGEKL-------------------- 203
           ++         S  ++          +  E+     G+                      
Sbjct: 62  MREPAVYGPKDSKNILSARYGGKKYTAMPEKFYRTKGKNAYAYTGYKNKRDVWTVSVRPF 121

Query: 204 ---HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
              H    PE L++  +++    G I+LDPF GSGT+  VA +  R+FIG E+   YIDI
Sbjct: 122 SSAHFATFPEKLITPCILAGCPEGGIVLDPFMGSGTTAKVALEHNRNFIGFELNPSYIDI 181

Query: 261 ATKRIAS 267
           A +R+  
Sbjct: 182 AKERLRD 188


>gi|323357538|ref|YP_004223934.1| DNA modification methylase [Microbacterium testaceum StLB037]
 gi|323273909|dbj|BAJ74054.1| DNA modification methylase [Microbacterium testaceum StLB037]
          Length = 464

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 83/252 (32%), Gaps = 40/252 (15%)

Query: 44  FADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW 103
              PPY   +N               D      S+E+Y A  R          +  G++W
Sbjct: 54  ITSPPYANLVNY-----------GTPDQIGFGQSYESYLAECRTVFEDIFSWTRDEGSMW 102

Query: 104 VIGSYHN--------------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAH 149
           ++                    F +        + + + IVWRK    P     R +N  
Sbjct: 103 LVADTLMEPQGAGKPSRLVPLPFDLAAQATAAGWTLRDTIVWRKDRTRPWASKGRLRNGF 162

Query: 150 ETLIWASPSPKAKGYTFN------YDALKAANEDVQMRS------DWLIPICSGSERLRN 197
           E +++       K +           +      +            W IPI        N
Sbjct: 163 EYVLYFVKGSSFKYHVDRLRDIRGMRSWWVKYPERHNPWGMTPDNVWDIPIPVQGSWASN 222

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
              +  H    P  L+ RI+  ST PGD++ DPF GSG   AV++   R  +G E+  ++
Sbjct: 223 ---DLRHACPFPPELVKRIVSLSTDPGDVVFDPFSGSGMVAAVSEAEGRRPLGTELNPEF 279

Query: 258 IDIATKRIASVQ 269
             I  + +   Q
Sbjct: 280 CRIYEQHVRPTQ 291


>gi|194097603|ref|YP_002000639.1| putative modification methylase [Neisseria gonorrhoeae NCCP11945]
 gi|240124889|ref|ZP_04737775.1| putative modification methylase [Neisseria gonorrhoeae SK-92-679]
 gi|240127401|ref|ZP_04740062.1| putative modification methylase [Neisseria gonorrhoeae SK-93-1035]
 gi|193932893|gb|ACF28717.1| putative modification methylase [Neisseria gonorrhoeae NCCP11945]
          Length = 92

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 5/97 (5%)

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
           +K  N+  QM+  W  P  + +E+   K     HPTQKP  LL R ++S++  GD+I DP
Sbjct: 1   MKTQNDGKQMKCVWTFPPPNKTEKTFGK-----HPTQKPLPLLERCILSASNIGDLIFDP 55

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           F GSGT+G  A K  R F G E+++D+ ++A KR+  
Sbjct: 56  FMGSGTTGVAALKHGRRFCGCELEEDFFELAKKRLEK 92


>gi|116331534|ref|YP_801252.1| DNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116125223|gb|ABJ76494.1| DNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 360

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 122/337 (36%), Gaps = 36/337 (10%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            +I   +S      L ++SVDL+   PPY  +++  +L+      +     + D   S+E
Sbjct: 6   HRIQFRDSRKTFP-LKSESVDLVLTSPPYPMIEMWDELFFGFSKEIQENFPT-DPNLSYE 63

Query: 80  AYDAFTRAWLLACRRVLKPNGTLW-VIGS-----------YHNIFRIGTMLQNLNFWILN 127
                         RVLK  G L   IG            Y N  RI     ++ F  L 
Sbjct: 64  RIHIELDKVWKESFRVLKNGGFLVINIGDATRNTSAGFQIYMNHARILQGCNSIGFQSLP 123

Query: 128 DIVWRKSNPMPN--------FRGRRFQNAHETLIWASPSPKAKGYTF-NYDALKAANEDV 178
            I+WRK    PN          G      HE ++    S K K  T     A   +    
Sbjct: 124 GILWRKQTNSPNKFMGSGMLPAGAYVTLEHEHILIFRKSNKRKFVTKAEQFARAQSAFFW 183

Query: 179 QMRSDWLIPIC--SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
           + R+ W   +    G ++  N    +      P  L +RI++  +  GD++LDPF+G+GT
Sbjct: 184 EERNLWFTDLWDFKGKKQSLNPLTGRDRSAAYPLELANRIILMYSLKGDVVLDPFWGTGT 243

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDI----------ATKRIASVQPLGNIELTVLTGKRTEP 286
           +   A    R+ IG ++                 +  RI   +   +           +P
Sbjct: 244 TTLAAIGNCRNSIGFDLNPGLFQTHFENLSSLGESLNRIVEKRKRDHDLFVQTRQNEGKP 303

Query: 287 RVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
            + FN  ++  ++   +   N +  I     +D  ++
Sbjct: 304 LLHFNQNLQTPVVTKQEKFLNLEKIIGLLRNSDEEIV 340


>gi|304316272|ref|YP_003851417.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777774|gb|ADL68333.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 432

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 80/265 (30%), Gaps = 32/265 (12%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +++ G+S       + +      +    PPY +    +          A  + W     
Sbjct: 171 HRLMCGDSTKDEDFEKLMEGCHAQMAVTSPPYGVGKEYE---------KAGIEPW----- 216

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGS--------YHNIFRIGTMLQNLNFWILNDI 129
           FE      R        V    G L+  GS        Y     +    + +   I    
Sbjct: 217 FETVRPVIRNLCRYADIVCWNLGDLYATGSQFIEPTSVYSVNMFLDNGYRPIWIRIWKKQ 276

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP-- 187
                    +    +    +E +   S   + + Y        +A      +    +   
Sbjct: 277 GQNFGVGPYHLVSNKPVQQYEYISAFSNKGEVEEYNDQEYVWLSAFAGHSYKFVKRLTKE 336

Query: 188 -----ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
                  +G   +      K HP   P  L  R +   +  G I+L+PF GSGT+   A+
Sbjct: 337 ERKKWGYAGIWEMTTVRANKEHPAMFPVELPWRCIKMHSDKGGIVLEPFSGSGTTIIAAE 396

Query: 243 KLRRSFIGIEMKQDYIDIATKRIAS 267
           +  R    +E+   Y D+A KR   
Sbjct: 397 QTERKCYAMELSPVYCDLAVKRWEE 421


>gi|125974145|ref|YP_001038055.1| DNA methylase N-4/N-6 [Clostridium thermocellum ATCC 27405]
 gi|125714370|gb|ABN52862.1| DNA methylase N-4/N-6 [Clostridium thermocellum ATCC 27405]
          Length = 432

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 79/257 (30%), Gaps = 16/257 (6%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +++ G+S       + +      +    PPY +    +    +    + V         
Sbjct: 171 HRLMCGDSTKNEDFEKLMEGCHAQMAVTSPPYGVGKEYEKAGIEP-WFETVRPVIRNLCR 229

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           +     +    L A         +++ +  +     +    + +   I            
Sbjct: 230 YADIVCWNLGDLYATGSQFIEPTSVYSVNMF-----LDNGYRPIWIRIWKKQGQNFGVGP 284

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP-------ICS 190
            +    +    +E +   S   + + Y        +A      +    +          +
Sbjct: 285 YHLVSNKPVQQYEYISAFSNKGEVEEYNDQEYVWLSAFAGHSYKFVKRLTKEERKKWGYA 344

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           G   +      K HP   P  L  R +   +  G I+L+PF GSGT+   A++  R    
Sbjct: 345 GIWEMTTVRANKEHPAMFPVELPWRCIKMHSDKGGIVLEPFSGSGTTIIAAEQTERKCYA 404

Query: 251 IEMKQDYIDIATKRIAS 267
           +E+   Y D+A KR   
Sbjct: 405 MELSPVYCDLAVKRWEE 421


>gi|310642922|ref|YP_003947680.1| adenine methyltransferase, putative [Paenibacillus polymyxa SC2]
 gi|309247872|gb|ADO57439.1| Adenine methyltransferase, putative [Paenibacillus polymyxa SC2]
          Length = 410

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 94/234 (40%), Gaps = 15/234 (6%)

Query: 20  KDKIIKGNS-----ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           + +++ G++     +++L  +   +  L+  DPPYN+ +       +    D  +   + 
Sbjct: 176 RHRLVCGDATNPDDVTLL--MDGANAALVVTDPPYNVAVE---SVSERLAADGRSSIMND 230

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
               E +  F  A       V++P   ++V             +   +  +    VW K+
Sbjct: 231 NMPAEDFAGFLYAVFSNYAVVMQPTAAIYVFHPSSYHREFEDAMNAASIVVRTQCVWVKN 290

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
                +   R++  HE + +A    KA  +  +          + +       +   S  
Sbjct: 291 AATFGWAQYRYK--HEPVFYAHLKGKAPAWYGDRTQTTVWKAGLPVEDPLPETVWEVSRG 348

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
             NK    +HPTQKP  LL+  + +S++ GD ++D F GSG++    +++ R+ 
Sbjct: 349 DVNKY---VHPTQKPLDLLAIPIRNSSQRGDEVVDFFGGSGSTLMTCEQMDRTC 399


>gi|256003546|ref|ZP_05428536.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum DSM
           2360]
 gi|255992570|gb|EEU02662.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum DSM
           2360]
 gi|316941389|gb|ADU75423.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum DSM
           1313]
          Length = 432

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 78/257 (30%), Gaps = 16/257 (6%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +++ G+S       + +      +    PPY +    +    +    + V         
Sbjct: 171 HRLMCGDSTKDEDFEKLMEGCHAQMAVTSPPYGVGKEYEKAGIEP-WFETVRPVIRNLCR 229

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           +     +    L A         +++ +  +          + +   I            
Sbjct: 230 YADIVCWNLGDLYATGSQFIEPTSVYSVNMFLENGY-----RPIWIRIWKKQGQNFGVGP 284

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP-------ICS 190
            +    +    +E +   S   + + Y        +A      +    +          +
Sbjct: 285 YHLVSNKPVQQYEYISAFSNKGEVEEYNDQEYVWLSAFAGHSYKFVKRLTKEERKKWGYA 344

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           G   +      K HP   P  L  R +   +  G I+L+PF GSGT+   A++  R    
Sbjct: 345 GIWEMTTVRANKEHPAMFPVELPWRCIKMHSDKGGIVLEPFSGSGTTIIAAEQTERKCYA 404

Query: 251 IEMKQDYIDIATKRIAS 267
           +E+   Y D+A KR   
Sbjct: 405 MELSPVYCDLAVKRWEE 421


>gi|260438180|ref|ZP_05791996.1| hemagglutinin associated protein [Butyrivibrio crossotus DSM 2876]
 gi|292809370|gb|EFF68575.1| hemagglutinin associated protein [Butyrivibrio crossotus DSM 2876]
          Length = 306

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 100/254 (39%), Gaps = 29/254 (11%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +I+GN    L  L   S+D I  D P+       L R  +               F  YD
Sbjct: 66  LIEGNGRD-LSMLKDNSIDCILTDHPW-------LDRKSNK---------GGTRDFAEYD 108

Query: 83  AF--TRAWLLACRRVLKPNGTLWVI------GSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            F  T        RVLK    L  +       +Y  +++I    +   F   + + W+K 
Sbjct: 109 CFRYTLNDFKEKARVLKEGCFLVEVLPAENENNYEYLYQIKNYAKEAGFLYYSKVTWKKG 168

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N + N  GR+ +N  + +++ S             +           S+ ++P     + 
Sbjct: 169 NFVSN-TGRKAKNTQD-IMFFSKGKARSMRIDKKKSDSTGQIHYMSGSNGMLPAMFDIQP 226

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           +  K+  K+H ++ P  L   IL   T  G+I+LD F GSG  G  A   +R+ I IE+ 
Sbjct: 227 VSKKN--KIHQSELPVELCEEILEYVTYQGEIVLDSFAGSGAVGVAALNKKRNCILIEIL 284

Query: 255 QDYIDIATKRIASV 268
           ++ I+    R  SV
Sbjct: 285 KENIEKIKNRFKSV 298


>gi|332983336|ref|YP_004464777.1| DNA methylase N-4/N-6 domain-containing protein [Mahella
           australiensis 50-1 BON]
 gi|332701014|gb|AEE97955.1| DNA methylase N-4/N-6 domain protein [Mahella australiensis 50-1
           BON]
          Length = 432

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 79/257 (30%), Gaps = 16/257 (6%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +++ G+S       + +      +    PPY +    +    +    + V         
Sbjct: 171 HRLMCGDSTKDEDFEKLMEGCHAQMAVTSPPYGVGKEYEKAGIEP-WFETVRPVIRNLCR 229

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           +     +    L A         +++ +  +     +    + +   I            
Sbjct: 230 YADIVCWNLGDLYATGSQFIEPTSVYSVNMF-----LDNGYRPIWIRIWKKQGQNFGVGP 284

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP-------ICS 190
            +    +    +E +   S   + + Y        +A      +    +          +
Sbjct: 285 YHLVSNKPVQQYEYISAFSNKGEVEEYNDQEYVWLSAFAGHSYKFVKRLTKEERKKWGYA 344

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           G   +      K HP   P  L  R +   +  G I+L+PF GSGT+   A++  R    
Sbjct: 345 GIWEMTTVRANKEHPAMFPVELPWRCIKMHSDKGGIVLEPFSGSGTTIIAAEQTERKCYA 404

Query: 251 IEMKQDYIDIATKRIAS 267
           +E+   Y D+A KR   
Sbjct: 405 MELSPVYCDLAVKRWEE 421


>gi|15669175|ref|NP_247980.1| type II R/M system modification methyltransferase
           [Methanocaldococcus jannaschii DSM 2661]
 gi|2500155|sp|Q58392|MTM1_METJA RecName: Full=Modification methylase MjaI; Short=M.MjaI; AltName:
           Full=N-4 cytosine-specific methyltransferase MjaI
 gi|1591647|gb|AAB98988.1| modification methylase, type II R/M system 1 [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 303

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 64/295 (21%), Positives = 108/295 (36%), Gaps = 34/295 (11%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPY-------------NLQLNGQLYRPDHSLVDA 67
            KII G++   ++++  +SV L+   PPY             NL++N + +    +  D 
Sbjct: 10  HKIIFGDARK-MDEIEDESVHLVVTSPPYPMIEMWDELFKMLNLEIN-KRWMEMENEEDE 67

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG-TLWVIGS-----------YHNIFRIG 115
                     +               RVL P G     IG            + N  +I 
Sbjct: 68  EKKEKLIMQIYNLMHQTLYPVWEEVYRVLVPGGIACINIGDATRKINGVFRLFPNHSKII 127

Query: 116 TMLQNLNFWILNDIVWRKSNPMPNF---RGRRFQNAHETL----IWASPSPKAKGYTFNY 168
              + + F  L  I+W+K +  PN     G    NA+ TL    I      K + +    
Sbjct: 128 ENFEKIGFVTLPYILWKKPSNKPNAFLGSGFLPPNAYVTLDVEYILIFRKGKPRKFKPKD 187

Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
               A+    + R  W   I       +     +      PE +  R++   +  GD +L
Sbjct: 188 PLRYASAYTKEERDRWFSQIWEIVGDKQTHPKIERRTASFPEEIPRRLIRMFSIIGDTVL 247

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
           DPF G+GT+   A +L+R+ IG E+ +    I  ++I   Q    ++  V    R
Sbjct: 248 DPFLGTGTTVKAAIELKRNSIGYEIDKSLKPIIEEKIGIKQKRIGMDFNVEFINR 302


>gi|114326568|ref|YP_743727.1| DNA methylase N-4/N-6 domain-containing protein [Nitrosomonas
           eutropha C91]
 gi|114326627|ref|YP_743785.1| DNA methylase N-4/N-6 domain-containing protein [Nitrosomonas
           eutropha C91]
 gi|114309507|gb|ABI60749.1| DNA methylase N-4/N-6 domain protein [Nitrosomonas eutropha C91]
 gi|114309566|gb|ABI60807.1| DNA methylase N-4/N-6 domain protein [Nitrosomonas eutropha C91]
          Length = 662

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 80/183 (43%), Gaps = 18/183 (9%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           S         G   +PT+KPE LL RI+ +    G ++LD F GSGT+   A+KL R FI
Sbjct: 335 SIWTDCGRMKGGSDYPTRKPEQLLERIITAGCPAGGVVLDTFVGSGTTAVAAQKLGRKFI 394

Query: 250 GIEMKQDYIDIATKRIASV------QPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQ 303
             ++    +  +TKR+ +       QPL   E      +        N  + R  +Q  +
Sbjct: 395 VADINLGAVQSSTKRLINSAVEILQQPLNEEERAFWGFEIHNVN---NYDIFRNPVQAKE 451

Query: 304 ILTNA---QGNISATVC---ADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGE 357
           +L  A   Q    +TV     DG ++   ++  ++R+  +   +E   G+++  +E+   
Sbjct: 452 LLIEALEIQKLEFSTVFDGEKDGRMV---KIMPVNRIATRADLNELIAGFDYKAWERKQN 508

Query: 358 LHS 360
              
Sbjct: 509 ESP 511



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 73/159 (45%), Gaps = 12/159 (7%)

Query: 19  WKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNL--QLNGQLYRPDHSLVDAVTDSWD 73
           W++KI  G+++ V+  L       +D+++ DPP++       +++    ++   +    D
Sbjct: 66  WRNKIFWGDNLQVMSHLLKQFRGKIDMVYIDPPFDSKADYRKKIHLKGITVAGDMAAFED 125

Query: 74  KFS----SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILN 127
           K      + + Y  F    L+  R +L   G++WV   +H    I  +L+ +      LN
Sbjct: 126 KQYGDLWTNDEYLQFMYERLVLLRELLTEEGSIWVQCDWHRSHHIRCLLEEIFGSSNFLN 185

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
           ++ W++++P  +    R    H+T+ W + + +   Y +
Sbjct: 186 EVAWQRTDPHND-AKSRLGIIHDTIFWVAKNKEKVFYDW 223


>gi|325168258|ref|YP_004277299.1| DNA methyltransferase [Acidiphilium multivorum AIU301]
 gi|325052937|dbj|BAJ83270.1| putative DNA methyltransferase [Acidiphilium multivorum AIU301]
          Length = 324

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/296 (17%), Positives = 107/296 (36%), Gaps = 41/296 (13%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS--LVDAVTDSWDKFSS 77
           + +++  ++   L +LP +SVD +  DPPY +    + Y  D    ++      W    S
Sbjct: 24  RSQLVHADAFEWLSQLPPESVDGMVFDPPYGV----KEYELDQIEMMLSGGPGIWRLPPS 79

Query: 78  FE-------------------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
           F+                       F R + +A    LKP   +++  +      + + +
Sbjct: 80  FDGSQRAPLPRFTALNPEERTTLHRFFRDFAVAALPALKPGAHIFMASNSFLSQLVFSAM 139

Query: 119 QNLNFWILNDIVWRKSNPMPNFR-----------GRRFQNAHETL-IWASPSPKAKGYTF 166
            +  F    +I+          R               +  +E   ++  P P       
Sbjct: 140 IDGGFEFRTEIIRLVQTLRGGDRPKLGEEEYPDVCSLPRGGYEPWGLFRKPMPPKMTVRE 199

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK-PGD 225
                       +   +    +       + +     HP+ KP++LL +++ +       
Sbjct: 200 CLRIYGTGGLRRRSDGNPFCDVIDSERTPKREKEIAPHPSLKPQSLLRQLVRAVLPLGKG 259

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK---RIASVQPLGNIELTV 278
           +++DPF GSG++ A A+ +    +G+E   DY ++ATK   R+ +V+        V
Sbjct: 260 VVVDPFMGSGSTVAAAEAVGYKCVGVERYDDYFEMATKAVPRLITVKAAAKSSHVV 315


>gi|163798248|ref|ZP_02192180.1| ParB domain protein nuclease [alpha proteobacterium BAL199]
 gi|159176496|gb|EDP61079.1| ParB domain protein nuclease [alpha proteobacterium BAL199]
          Length = 422

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 83/249 (33%), Gaps = 27/249 (10%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD-AVTDSWDKFS 76
            +++ G+S     V   +  +   L   DPPY +  +G  +   +     +   +WD  S
Sbjct: 161 HRLLCGDSTKPEDVRRLMNGERAALFATDPPYLVDYDGSNHPTRNKDWSQSYGVTWDDSS 220

Query: 77  -SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
              + YD F  A +      +  +   +   +      +    +    ++   I+W K  
Sbjct: 221 QGSDLYDGFIAAAVAEA---ITEDAAWYCWHASRRQAMLEACWEKAGAFVHQQIIWVKDR 277

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            +       +   HE        P                 D  + S W +P  +  ER 
Sbjct: 278 GV--LTRSHYLWKHEPCFMGWRRPN----------RPPKVADDTLASTWELPSFAKDERP 325

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                   HPT KP       +      G +  +PF GSG+     +   R    +E+  
Sbjct: 326 D-------HPTPKPLDAFGIPMRQHVARGGLCYEPFSGSGSQIMAGEANGRRVYAMEISP 378

Query: 256 DYIDIATKR 264
            Y+D+A +R
Sbjct: 379 AYVDVAIER 387


>gi|261837549|gb|ACX97315.1| adenine-methyltransferase [Helicobacter pylori 51]
          Length = 165

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 66/151 (43%), Positives = 91/151 (60%), Gaps = 6/151 (3%)

Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
           +G +LQ L+F ILN I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK 
Sbjct: 1   MGRILQKLDFKILNLITWQKTNPPPNFSCRYLTHSAEQIIWARKSRKHK-HVFNYEVLKK 59

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
            N D QMR  W  P  +  E+   K     HPTQKP ALL R+L+ ++    +I DPF G
Sbjct: 60  INNDKQMRDVWSFPAIAPWEKTNGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSG 114

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           S T+G  A  L+R FIGIE + +++ ++  R
Sbjct: 115 SSTTGIAANLLKRQFIGIEKESEFVKMSMDR 145


>gi|257440814|ref|ZP_05616569.1| DNA (cytosine-5-)-methyltransferase [Faecalibacterium prausnitzii
           A2-165]
 gi|257196788|gb|EEU95072.1| DNA (cytosine-5-)-methyltransferase [Faecalibacterium prausnitzii
           A2-165]
          Length = 184

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 79/189 (41%), Gaps = 21/189 (11%)

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           +  F        +     +G L     +         ++   F + ++++W K       
Sbjct: 16  FIWFLYDAFRVLKSGEAGHGGLICFTRWDVEQTFIDAMKIAGFNVKSEVIWDKVYHGMGD 75

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
               F  +HE +++A     +                 + +     P  + S+       
Sbjct: 76  TKAAFAPSHENIVFAIKGKYSFP-------------GSRPKDLVTFPKINSSKM------ 116

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
             +HPT+KP  LL+ ++ S TKPGD+ILDPF GSG++   AKK  R FIGIE+  DY   
Sbjct: 117 --VHPTEKPVGLLANLISSVTKPGDLILDPFAGSGSTLVAAKKTGRRFIGIELDDDYFVT 174

Query: 261 ATKRIASVQ 269
           A +RI  V+
Sbjct: 175 AQRRIEEVR 183


>gi|308272438|emb|CBX29042.1| hypothetical protein N47_J00230 [uncultured Desulfobacterium sp.]
          Length = 745

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 79/426 (18%), Positives = 150/426 (35%), Gaps = 98/426 (23%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVD----------LIFADPPYNLQ---------------- 52
           W +K+I G++  +L  L    +           LI+ DPP+++                 
Sbjct: 89  WTNKLIWGDNKLILSSLKNGPLREEIEKQGGLKLIYIDPPFDVGADFSMDIEIPSSFSPE 148

Query: 53  ------LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
                 +     +P+     A  D+W K +  +++ A     L+  R +L  +G+++V  
Sbjct: 149 KGGQRGVETFTKKPNILEEIAYRDTWGKGA--DSFIAMIYERLVLMRDLLAEDGSIYVHC 206

Query: 107 SYHNIFRIGTMLQNLN--FWILNDIVWRKS--NPMPNFRGRRFQNAHETLIWASPSPKAK 162
            +     I  +L ++       N+I W++           +  +N+   L ++       
Sbjct: 207 DWRVNSYIRLVLDDIFGTSCYRNEIRWKRQPVRGAKATSNQYARNSDGILFYSKSDKWTW 266

Query: 163 GYTFNYDALKAANEDVQMRSDW------------------------LIPICSGSERL--- 195
              +     K      +  +D                         +    SG +RL   
Sbjct: 267 NGAYKDYDPKFIETKFRSDTDGRLFRDCDLGDYSEKSISDFEKQGKIYITSSGKKRLKRF 326

Query: 196 -RNKDGEKL-------------------HPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
              + GE L                   + TQKPE+L+  I+ +S+  GD++ D F GSG
Sbjct: 327 LDEEKGESLGDMLVHIPEVNSMAVERTGYATQKPESLVEIIIKASSNEGDLVADFFCGSG 386

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
           T+ AVA+KL R +I  ++ +  I    KR+  VQ     E       R    +       
Sbjct: 387 TTAAVAEKLGRKWIATDLGKFAIHTTRKRLIGVQRQLKAEG---KNYRAFEILNLGKYER 443

Query: 296 RGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKL 355
           +  I     L  A+ +           +   E   I  +  K   +E  +G+  ++ +K 
Sbjct: 444 QHYIGINPNLREAEQHKQ---------LEEKEAAFIELI-LKAYRAEKTSGFTAFHGKKA 493

Query: 356 GELHSI 361
           G L ++
Sbjct: 494 GRLVAV 499


>gi|282600720|ref|ZP_05979580.2| DNA (cytosine-5-)-methyltransferase [Subdoligranulum variabile DSM
           15176]
 gi|282571522|gb|EFB77057.1| DNA (cytosine-5-)-methyltransferase [Subdoligranulum variabile DSM
           15176]
          Length = 276

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 55/270 (20%), Positives = 95/270 (35%), Gaps = 80/270 (29%)

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLW--------------VIGSYHNI-------- 111
           + ++ + Y +         RRVL+ +GTLW                    N         
Sbjct: 7   RETTPKEYISRLTEVFTEVRRVLRSDGTLWLNISDTYAGKGNQGDFNDPKNPNGRNGQAV 66

Query: 112 ------------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
                             + +   L++  +++ NDI+W K NPMP     R    +E + 
Sbjct: 67  ALNNKVEGCKPKDMIGIPWMLAFALRDTGWYLRNDIIWMKDNPMPESVKDRCARCYEHIF 126

Query: 154 WASPSPKAKGYTFNYDALKAA---------NEDVQMRSDWLIPIC--------------- 189
             S    +K Y F+Y A+               ++  + +  P+                
Sbjct: 127 LFSK---SKKYFFDYKAISEPIAPATAERLKRGMKGGNKYGKPVPGQPQPQSINRPREHG 183

Query: 190 -------------SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
                            ++     +  H    P  L+   L++    G ++LDPF GSGT
Sbjct: 184 EIKDADINPLRNKRDVWKINTVPFKGGHYAAYPPKLVETCLLAGCPEGGVVLDPFMGSGT 243

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           +G VA ++ R F+GIE+   Y ++A KRI 
Sbjct: 244 TGMVAAQMGRHFVGIELNPAYTELAYKRIG 273


>gi|219850188|ref|YP_002464621.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
           aggregans DSM 9485]
 gi|219544447|gb|ACL26185.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aggregans DSM
           9485]
          Length = 347

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 54/316 (17%)

Query: 6   SLAINENQN-SIFEWK-DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ------- 56
            L +N N N ++ + + ++I  G++ ++L  +   S+ L    PPY +    +       
Sbjct: 25  ELYVNGNGNGTLHDVRPNEIYVGDARALLPNIEPNSIALSVWSPPYFVGKEYEAHLSFED 84

Query: 57  --------------LYRPDHSLVDAVTDSW----------------------------DK 74
                         + +P   LV  + D                                
Sbjct: 85  WQDLLRTVIHLHFPIIKPGGFLVINIADILVFKDPSMPRIQAEAVTRKRCPVTKADVLKA 144

Query: 75  FSSFEAYDAFTRAWLLACRRVLKP---NGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
            +    Y+ +  A LL C         +G     G Y +  R+  +   +  W L+  ++
Sbjct: 145 MAEHPDYNRYQLAKLLGCSEQTIDRRLHGNNIRGGKYESQTRVKIVGGLVEEWALSAGLY 204

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
                +         +   +L + S       Y F    +   +       +W      G
Sbjct: 205 PYDRRIWVKDAAWENSRWASLSYRSVDEFEYLYFFWKPGITKFDRKRLSADEWKNWGSRG 264

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
              + +      H  + P  L +R++   T PGDI+LD F GSGT+   A +  R +IGI
Sbjct: 265 VWYVPSVRANDDHEAKFPIELPTRVIRLLTDPGDIVLDCFMGSGTTAVAAIRENRQYIGI 324

Query: 252 EMKQDYIDIATKRIAS 267
           E+ + Y+++A +RIA+
Sbjct: 325 EILEKYVNLARQRIAA 340


>gi|254442327|ref|ZP_05055803.1| DNA methylase [Verrucomicrobiae bacterium DG1235]
 gi|198256635|gb|EDY80943.1| DNA methylase [Verrucomicrobiae bacterium DG1235]
          Length = 330

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 63/292 (21%), Positives = 99/292 (33%), Gaps = 72/292 (24%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            K+++G+S  +L+  P + V L F   PY             S+VD  T S  +F S + 
Sbjct: 48  HKLLQGDSFELLDLFPPECVQLHFTSIPYG------------SIVD-YTGSGLEFGSEKT 94

Query: 81  YDAFT---RAWLLACRRVLKPNGTLWVIG------------------------------- 106
           Y  F      +L A  R+ K  G + +                                 
Sbjct: 95  YQKFLDRLELFLAASFRLCKQGGCVVLNARGLSSGSGCGPVGSKTFRGRSKIAAKRGVGR 154

Query: 107 --SYHNIFR----------IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
             ++   FR          IG +   + F    D +W K+  +P     R    HE LI 
Sbjct: 155 QSNFAEGFRRKDFIDLPGDIGRLGSKVGFTWRGDDIWEKTRCLPESVKDRHARVHENLIL 214

Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
            +  P    Y F+   L+     +               RL        HP      L  
Sbjct: 215 LTKGPL---YKFDRSRLRQLGSKMDQ----------SVLRLPTSTANYGHPATFSPILAE 261

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
             + ++T  GD++LD F G G++   A K  R  I +E+  D+   A  R+ 
Sbjct: 262 HYIYAATDEGDVVLDAFGGVGSTALAALKHGRHSITMELSHDFFGKALDRLE 313


>gi|313678462|ref|YP_004056202.1| type III restriction-modification system, Mod subunit [Mycoplasma
           bovis PG45]
 gi|312950447|gb|ADR25042.1| type III restriction-modification system, Mod subunit [Mycoplasma
           bovis PG45]
          Length = 352

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/299 (17%), Positives = 105/299 (35%), Gaps = 28/299 (9%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDKF 75
              K  I+  +++ +   +  +SVDL+   PPY  +++  +++  +    + +    D  
Sbjct: 1   MHTKHTILNIDALKMNSHIDDESVDLVITSPPYPMIKMWDEIFEINE---NEIKTEADVN 57

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLW-VIGS-----------YHNIFRIGTMLQNLNF 123
           S+F     F         + +KP G +   IG            + N  ++        +
Sbjct: 58  SAFLKATQFLNNIWEKVDKSIKPGGIVCINIGDATRNLGGNFRLFSNSGQVINFFIKKGY 117

Query: 124 WILNDIVWRKSNPMPN--------FRGRRFQNAHETLIWASPSPKAKGYTF--NYDALKA 173
             L  I+WRK    PN          G      HE ++        + +    +      
Sbjct: 118 LQLPSIIWRKQTNAPNKFMGSGMLPAGAYATLEHEWILIFRKGITKREFKNAKDKSLRNE 177

Query: 174 ANEDVQMRSDWLIPIC--SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
           +    + R+ W   +    G ++  +    +      P  L  R++   +   DI+ DPF
Sbjct: 178 SAFFWEERNVWFSDLWDFKGIKQKNDIKNSRDRTAAYPIELPYRLISMFSVKNDIVFDPF 237

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAF 290
            G+GT+   +  L+R+ IG+E+ +   +   + +                KR      F
Sbjct: 238 LGTGTTTLASMLLQRNSIGVEIDKSLCNHFKEYLVKNDVKLVDNFNDKISKRISSHTEF 296


>gi|258592088|emb|CBE68393.1| Modification methylase BglI (M.BglI) (N(4)-cytosine-specific
           methyltransferase BglI) (BglI modification
           methyltransferase) [NC10 bacterium 'Dutch sediment']
          Length = 338

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/313 (18%), Positives = 108/313 (34%), Gaps = 86/313 (27%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I  G+SI+VL   PA S+DL F  PPY +  N + +                  +F+ 
Sbjct: 35  NRIYTGDSIAVLRSFPAASIDLSFWSPPYFVGKNYEAH-----------------LTFQQ 77

Query: 81  YDAFTRAWLLACRRVLKPNGTLW-------VIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           +    R  ++   RV+K    +                  +   + N    I  + V   
Sbjct: 78  WQELLRGVIVEHARVMKSGSFMVINISDILCFTDTEMPRYMANNISNKKIAITREDVLAA 137

Query: 134 SNPMPNFRG---------------RRFQNA------------------------------ 148
               P                   RR ++                               
Sbjct: 138 MKKHPKASRYELAKLFGCSEQTIQRRAEHNNVRGGKYEAGTKVFVVGGLLQGWAESVGLY 197

Query: 149 -HETLIWAS--PSPKAKGYTFNYDALKAA--------------NEDVQMRSDWLIPICSG 191
            ++  IW        ++ ++ +Y A+                 + +   +++W      G
Sbjct: 198 LYDRRIWHKDPCWANSRWHSNSYRAVDEFEYLYVFWKPGIIDVDRNRLKKNEWAEWGSRG 257

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
              +R+      H  + PE L  R++   + PGD+++DPF GSGT+  +A KL+R +IGI
Sbjct: 258 VWNIRSVQRNGRHECEFPEMLAERVIRLFSDPGDVVIDPFVGSGTTTRMAHKLKRKYIGI 317

Query: 252 EMKQDYIDIATKR 264
           +  + Y  +A  R
Sbjct: 318 DRLKKYTKLAESR 330


>gi|313631431|gb|EFR98768.1| DNA methylase [Listeria seeligeri FSL N1-067]
          Length = 203

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 88/206 (42%), Gaps = 6/206 (2%)

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            + E +D F      + ++V+  +  ++V             ++  N  + +  +W K+ 
Sbjct: 1   MTDEQFDMFLAKVFQSYQKVMAGHAAIYVFHPSSYQIEFENSMKLANIQVRSQCIWIKNY 60

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P   +   R+Q  HE + +A    ++  +  +        +   +  +      +  E  
Sbjct: 61  PSFGWSQYRWQ--HEPVFYAHLKGESPFWYGDRKQTTTWRDHSYLGEE----ASTIWEIA 114

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           R+ +   +HPTQKP  LL+  + +S+K GD I D F GSG++   A++L R    +E+  
Sbjct: 115 RDSNNTYIHPTQKPLDLLAIPMRNSSKKGDTIADFFGGSGSTLLTAEQLGRICYTMELDP 174

Query: 256 DYIDIATKRIASVQPLGNIELTVLTG 281
            + D   +R  +   +  + +  LT 
Sbjct: 175 KFCDAIKQRFEAYTGIKPVLMQQLTT 200


>gi|256840184|ref|ZP_05545692.1| adenine-specific DNA methylase [Parabacteroides sp. D13]
 gi|256737456|gb|EEU50782.1| adenine-specific DNA methylase [Parabacteroides sp. D13]
          Length = 674

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 69/365 (18%), Positives = 127/365 (34%), Gaps = 96/365 (26%)

Query: 18  EWKDKIIKGNSISVLEKL---------PA--KSVDLIFADPPYNLQLNGQLY-------- 58
           EW +++I G+++ V++ L         P+    VDLI+ DPP++ + + +          
Sbjct: 63  EWMNRLIYGDNLLVMQALLAGDETTGLPSLRGKVDLIYIDPPFDSKADYRTKINLPGVDI 122

Query: 59  --RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-----WVIGSY--- 108
             +P      A +D+W   +   +Y       L+  R +L   G++     W IG+Y   
Sbjct: 123 EQKPTVIEQFAYSDTWQDGTV--SYLKMLYPRLVLMRELLSEKGSIYVHIDWHIGAYLKV 180

Query: 109 -------HNIFRIGTMLQNL-------------------------NFWILNDIVWRKSNP 136
                     F+   + ++                             + NDI    S  
Sbjct: 181 IMDDVLGKENFKNEIIWKSAVGDTSNKNKKYIKSHDTIFFYNKIQGIQVWNDIFQEYSEK 240

Query: 137 MPNFRGRRF-QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS---DWLIP----- 187
             N       +  +  +   +P      Y   Y      N     +     W+       
Sbjct: 241 NKNAYRYEDEKGTYRFVPIDNPGGGGYIYDLGYGENIPTNGYRMPKETALKWIESGELIV 300

Query: 188 -----------------ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
                             C+      N +   ++ TQKPE LL RI+ +S+  GD++ D 
Sbjct: 301 EKGKCPKRKLYQKTDGLRCTDIWTDINHERGLVYATQKPEKLLERIIKASSDEGDLVCDF 360

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS-------VQPLGNIELTVLTGKR 283
           F GSGT+ AVA++L R +I  ++ +    +  KR           Q +G+ +       +
Sbjct: 361 FGGSGTTAAVAERLGRRWITTDIGKPATLVMRKRFIDQEVKPFLYQAIGDYQKEAFQNNK 420

Query: 284 TEPRV 288
              R+
Sbjct: 421 QYKRI 425


>gi|281418289|ref|ZP_06249309.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum
           JW20]
 gi|281409691|gb|EFB39949.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum
           JW20]
          Length = 432

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 79/257 (30%), Gaps = 16/257 (6%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +++ G+S       + +      +    PPY +    +    +    + V         
Sbjct: 171 HRLMCGDSTKDEDFEKLMEGCHAQMAVTSPPYGVGKEYEKAGIEP-WFETVRPVIRNLCR 229

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           +     +    L A         +++ +  +     +    + +   I            
Sbjct: 230 YADIVCWNLGDLYATGSQFIEPTSVYSVNMF-----LDNGYRPIWIRIWKKQGQNFGVGP 284

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP-------ICS 190
            +    +    +E +   S   + + Y        +A      +    +          +
Sbjct: 285 YHLVSNKPVQQYEYISAFSNKGEVEEYNDQEYVWLSAFAGHSYKFVKRLTKEERKKWGYA 344

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           G   +      K HP   P  L  R +   +  G I+L+PF GSGT+   A++  R    
Sbjct: 345 GIWEMTTVRANKEHPAMFPVELPWRCIKMHSDNGGIVLEPFSGSGTTIIAAEQTERKCYA 404

Query: 251 IEMKQDYIDIATKRIAS 267
           +E+   Y D+A KR   
Sbjct: 405 MELSPVYCDLAVKRWEE 421


>gi|15612349|ref|NP_224002.1| type II DNA modification (methyltransferase [Helicobacter pylori
           J99]
 gi|4155888|gb|AAD06858.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
           pylori J99]
          Length = 649

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 63/302 (20%), Positives = 107/302 (35%), Gaps = 71/302 (23%)

Query: 22  KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
            +IK  +   L  L     +++D I+ DPP+N          D + +D   DS       
Sbjct: 250 TLIKSENYQALNSLKNRYKEAIDCIYIDPPFNTG-------SDFAYIDRFQDS------- 295

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--ILNDIVWRKSNP 136
             + +     L      L P G  ++   Y   +    +L ++       N+I+W     
Sbjct: 296 -TWLSLMHNRLQLAYDFLSPQGNFYLHLDYRANYLGRMLLNDIFSKENFRNEIIWHFRTY 354

Query: 137 MPNFRGRRFQNAHETLIWASPS-----PKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
               +   F   H++L+W S +          Y+ NY          +   D    +   
Sbjct: 355 QGQIQSN-FPRKHDSLLWYSKNCNVNNFFKITYSDNYKDTVDYRRWREFIVDNNKIVYPN 413

Query: 192 SERLRNK----------------------------------DGEKLHP-----------T 206
             +  ++                                  D + + P           T
Sbjct: 414 YPKADSRFDGYLKRYLQSTKEPKNGDIIATINGYVIDDVWTDIQAIDPKKADERLQGTLT 473

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           QKPE LL RI+ +S+    I+ D F GSGT+ AVA KL+R +IG+EM + +  +   R+ 
Sbjct: 474 QKPEKLLERIIKASSNENSIVCDFFAGSGTTCAVAHKLKRKYIGVEMGEHFESVILPRLK 533

Query: 267 SV 268
            V
Sbjct: 534 KV 535


>gi|317474980|ref|ZP_07934249.1| DNA methylase [Bacteroides eggerthii 1_2_48FAA]
 gi|316908883|gb|EFV30568.1| DNA methylase [Bacteroides eggerthii 1_2_48FAA]
          Length = 255

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 98/262 (37%), Gaps = 44/262 (16%)

Query: 23  IIKGNSISVLEKLPAKSV--DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + +G+++ VL  L  + +  D++ +DPPY     G  +    +++D +   W+       
Sbjct: 16  LYRGDALDVLPLLAEEGITADMVLSDPPY-----GTTHCRWDAVID-IPGMWN------- 62

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                     A + + +P+  + +   +     +G+   NL       +  +        
Sbjct: 63  ----------AVQGISRPDTPVLLFCQHPFTSLLGS--SNLRRLRYAWVWEKTQATGFLN 110

Query: 141 RGRRFQNAHETLI----------WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
            GR    AHE ++                  +         K    ++  + D      S
Sbjct: 111 AGRMPMKAHEDILVFYDRLPKYHPIKTDGHRRKVVMAEHQRKCDAGEIYRKHDNFRDYIS 170

Query: 191 GSERLR-------NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
                R       +K    LH TQKP ALL  ++ + T  GDI+LD   GSG++    + 
Sbjct: 171 TERYPRSVLKFKTDKQRSCLHATQKPVALLEYLIRTYTDEGDIVLDFAMGSGSTAVACRN 230

Query: 244 LRRSFIGIEMKQDYIDIATKRI 265
             R F+G+E+ ++    A  RI
Sbjct: 231 TGRRFVGVEIDREIFQTALNRI 252


>gi|21674545|ref|NP_662610.1| DNA methylase, putative [Chlorobium tepidum TLS]
 gi|21647740|gb|AAM72952.1| DNA methylase, putative [Chlorobium tepidum TLS]
          Length = 1122

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 66/332 (19%), Positives = 121/332 (36%), Gaps = 85/332 (25%)

Query: 19  WKDKIIKGNSISVLEKLPAK-----SVDLIFADPPYNLQLN-------GQLYRPDHSLVD 66
           W +++I G+S+ V+  L  K      V +I+ DPPY ++          +    D    D
Sbjct: 138 WSNRLIAGDSLLVMNSLLEKEGMAGKVQMIYIDPPYGIKYGSNFQPFVNKRDVKDGKDED 197

Query: 67  ---------AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
                    A  D+W+      +Y  + R  LL  R +L  +G+++V  S  N+  +  +
Sbjct: 198 LTAEPEQIRAFRDTWE--LGIHSYLTYLRDRLLLARELLTESGSIFVQISDENVHHVREL 255

Query: 118 LQNLN--FWILNDIVWRKSNPMP------------NFRGRRFQNAHETLIWASPSPKAKG 163
           +  +         I  +K +P P             F   R ++ +  L W S   +  G
Sbjct: 256 MDEVFGARNFQRVITIKKRSPQPDKFLSGVADYLIWFSKDRDRSKYNQLYWLS-EGEYNG 314

Query: 164 YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE---------------------- 201
             F    L +++E  +   +    + S   R  +   E                      
Sbjct: 315 NEFVTSDLTSSHEYHRTPFEHEGQVFSPGSRYWSTSIEGLTNLARSGRLVVSGSTLRYKR 374

Query: 202 -------------------------KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
                                    KL+  Q    +L R L+ +T PGD++ DP  GSGT
Sbjct: 375 FNSDWPCQLIGNIWDDVVFAPFLEDKLYAVQTSVKILQRCLLMTTDPGDLVFDPTCGSGT 434

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +  VA++  R +I  +  +  + +A +R+ + 
Sbjct: 435 TAYVAEQWGRRWITCDTSRVALTLARQRLMTA 466


>gi|260587176|ref|ZP_05853089.1| putative prophage LambdaMc01, DNA methyltransferase [Blautia
           hansenii DSM 20583]
 gi|260542371|gb|EEX22940.1| putative prophage LambdaMc01, DNA methyltransferase [Blautia
           hansenii DSM 20583]
          Length = 445

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 56/286 (19%), Positives = 106/286 (37%), Gaps = 46/286 (16%)

Query: 21  DKIIKGNSISVLEK---LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS- 76
            +++ G+S +  ++   L      ++  DPPY      +  R   S+     D+  K   
Sbjct: 190 HRLVCGDSTNEADRALLLDGAEPQILLMDPPYCSGGFQESGRSTGSIGTKRYDANGKEIK 249

Query: 77  --------SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
                   S   Y    R+ L            ++    +     +  +++   F + N 
Sbjct: 250 VTIANDSLSTRGYQQLMRSILKQF-----TGTVVYCFTDWRMWLYLYDVMEESGFGVKNM 304

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
           IVW K  P     G  ++  HE +++A  +  A                      W    
Sbjct: 305 IVWNKKTPG---MGMGWRTQHELIMFAHRTKPA----------------------WDNHK 339

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
             G+     + G +LHPTQKP  +L ++L + T+  + ++D F GSGT+   A+ + +  
Sbjct: 340 GYGNVIEATRSGNELHPTQKPVEILEKLLDN-TQWAEGVMDAFGGSGTTLIAAESIGQKS 398

Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK-RTEPRVAFNLL 293
             +E+   ++D   KR   ++  G      L  K +   R  F  +
Sbjct: 399 YLMELSPQFVDTIVKRY--IRTTGKTTGIRLFRKGKELGREHFERM 442


>gi|257439329|ref|ZP_05615084.1| putative prophage LambdaMc01, DNA methyltransferase
           [Faecalibacterium prausnitzii A2-165]
 gi|257198204|gb|EEU96488.1| putative prophage LambdaMc01, DNA methyltransferase
           [Faecalibacterium prausnitzii A2-165]
          Length = 445

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 56/286 (19%), Positives = 106/286 (37%), Gaps = 46/286 (16%)

Query: 21  DKIIKGNSISVLEK---LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS- 76
            +++ G+S +  ++   L      ++  DPPY      +  R   S+     D+  K   
Sbjct: 190 HRLVCGDSTNEADRALLLDGAEPQILLMDPPYCSGGFQESGRSTGSIGTKRYDANGKEIK 249

Query: 77  --------SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
                   S   Y    R+ L            ++    +     +  +++   F + N 
Sbjct: 250 VTIANDTLSTRGYQQLMRSILKQF-----TGTVVYCFTDWRMWLYLYDVMEESGFGVKNM 304

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
           IVW K  P     G  ++  HE +++A  +  A                      W    
Sbjct: 305 IVWNKKTPG---MGMGWRTQHELIMFAHRTKPA----------------------WDNHK 339

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
             G+     + G +LHPTQKP  +L ++L + T+  + ++D F GSGT+   A+ + +  
Sbjct: 340 GYGNVIEATRSGNELHPTQKPVEILEKLLDN-TQWAEGVMDAFGGSGTTLIAAESIGQKS 398

Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK-RTEPRVAFNLL 293
             +E+   ++D   KR   ++  G      L  K +   R  F  +
Sbjct: 399 YLMELSPQFVDTIVKRY--IRTTGKTTGIRLFRKGKELGREHFERM 442


>gi|291303704|ref|YP_003514982.1| DNA methylase N-4/N-6 domain-containing protein [Stackebrandtia
           nassauensis DSM 44728]
 gi|290572924|gb|ADD45889.1| DNA methylase N-4/N-6 domain protein [Stackebrandtia nassauensis
           DSM 44728]
          Length = 333

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 64/307 (20%), Positives = 105/307 (34%), Gaps = 76/307 (24%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF-EAY 81
           ++  ++ ++   L  +SVDLI   PPY      + Y       D    +    +++ +A 
Sbjct: 5   VMCADARAL--PLADESVDLIVTSPPY---YGLRSYTNGGRHYDGQIGAEPTPAAYIDAL 59

Query: 82  DAFTRAWLLACRRVLKPNGTLW-------------------------------VIGSYHN 110
              TR WL    RVLKP G+LW                                 G+   
Sbjct: 60  IEATRDWL----RVLKPVGSLWVNLGDAYVGGGRGGNLGGHLTGGSHTKTASTPHGTSKY 115

Query: 111 ---------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS--- 158
                           L +L   +  +++W K N MP     R + +HET +        
Sbjct: 116 PAKTLLGLPWRYAIRCLDDLGLILRAEVIWSKPNAMPESMTDRVRRSHETWLHFVQHQRY 175

Query: 159 --------PKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK------------ 198
                     A  Y+    A + A    + R   ++  C+   RL               
Sbjct: 176 FAAIDGIREPASNYSRPNGAGRQARGGQKPRK--MLDTCNPLGRLPGSVWEIATQPLHIP 233

Query: 199 -DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
            +    H    P     R++++   P   +LDPF G+GT+  VA  L R+ I ++   DY
Sbjct: 234 AELNITHHAAFPLEWPRRLIIAWCPPSGTVLDPFGGTGTTALVADVLGRTGISVDASADY 293

Query: 258 IDIATKR 264
             +A  R
Sbjct: 294 CRLARWR 300


>gi|283798251|ref|ZP_06347404.1| putative prophage LambdaMc01, DNA methyltransferase [Clostridium
           sp. M62/1]
 gi|291074032|gb|EFE11396.1| putative prophage LambdaMc01, DNA methyltransferase [Clostridium
           sp. M62/1]
          Length = 445

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 56/286 (19%), Positives = 106/286 (37%), Gaps = 46/286 (16%)

Query: 21  DKIIKGNSISVLEK---LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS- 76
            +++ G+S +  ++   L      ++  DPPY      +  R   S+     D+  K   
Sbjct: 190 HRLVCGDSTNEADRALLLDGAEPQILLMDPPYCSGGFQESGRSTGSIGTKRYDANGKEIK 249

Query: 77  --------SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
                   S   Y    R+ L            ++    +     +  +++   F + N 
Sbjct: 250 VTIANDTLSTRGYQQLMRSILKQF-----TGTVVYCFTDWRMWLYLYDVMEESGFGVKNM 304

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
           IVW K  P     G  ++  HE +++A  +  A                      W    
Sbjct: 305 IVWNKKTPG---MGMGWRTQHELIMFAHRTKPA----------------------WDNHK 339

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
             G+     + G +LHPTQKP  +L ++L + T+  + ++D F GSGT+   A+ + +  
Sbjct: 340 GYGNVIEATRSGNELHPTQKPVEILEKLLDN-TQWAEGVMDAFGGSGTTLIAAESIGQKS 398

Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK-RTEPRVAFNLL 293
             +E+   ++D   KR   ++  G      L  K +   R  F  +
Sbjct: 399 YLMELSPQFVDTIVKRY--IRTTGKTTGIRLFRKGKELGREHFERM 442


>gi|218960492|ref|YP_001740267.1| putative Modification methylase MjaI (N-4 cytosine-specific
           methyltransferase MjaI) (M.MjaI) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729149|emb|CAO80060.1| putative Modification methylase MjaI (N-4 cytosine-specific
           methyltransferase MjaI) (M.MjaI) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 350

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 60/289 (20%), Positives = 110/289 (38%), Gaps = 34/289 (11%)

Query: 2   SQKNSLAINE-NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           S  N++ I++ N   I     KI   NS+  ++ L    + L+   PPY    + ++Y  
Sbjct: 65  SHSNNIDIDKVNTLEINGTIQKIYIKNSMK-MDDLEDNRIHLMITSPPYF---DTKMYSG 120

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW-------------VIGS 107
           +      +        + + +            RVL+P    +                +
Sbjct: 121 EP-----LPGDLGNIHNIDEWFEKIGEVWKEVYRVLQPGRKAFINIMNLPVRLEKGKFRT 175

Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPM-------PNFRGRRFQNAHETLIWASPSPK 160
            +   R   + + + F    DI+W+K+N +       P   G    N HE ++     P+
Sbjct: 176 LNLAGRTIDLCEKIGFIFKRDIIWQKTNAVRAHFGTYPYPGGILINNMHEFILEFDK-PE 234

Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG---EKLHPTQKPEALLSRIL 217
            KG+       K   E  ++  D+ + I      +    G    + H    P  L  R++
Sbjct: 235 KKGFNKYGHLTKEQKEQSKLDKDFWLSIKKSDVWVMKPQGSGDNRNHIAPFPYELPFRLI 294

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
            + +  G+ ILDPF GSG + + A  L+R+ IG E+  +    A K + 
Sbjct: 295 KAFSYVGETILDPFVGSGVTLSAAADLKRNGIGYEIYPEIAYEAVKALR 343


>gi|148658370|ref|YP_001278575.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus sp.
           RS-1]
 gi|148570480|gb|ABQ92625.1| DNA methylase N-4/N-6 domain protein [Roseiflexus sp. RS-1]
          Length = 314

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/285 (17%), Positives = 106/285 (37%), Gaps = 36/285 (12%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNL------------QLNGQLYRPDHSLVDAVTD 70
           +I  +    + ++P +S+  I  DPPY +              +G ++R   S    V  
Sbjct: 24  VIHADCFEWMSRIPTESIHAIVTDPPYGVKEYDSEQLEKRSNGHGGIWRIPPSFDGHVRS 83

Query: 71  SWDKFSSF-----EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
              +F++      E  + +   W     ++L+P   L++  +      +   +       
Sbjct: 84  PLPRFTALNSKERERIEQYFYEWAKLAMQILRPGAHLFLASNVFLSQIVFASIVRAGLEF 143

Query: 126 LNDIVWRKSNPMPNFRGRRFQNA--------------HETL-IWASPSPKAKGYTFNYDA 170
              ++           G R +NA              +E   I+  P PK          
Sbjct: 144 RGQVIRLVRTLRG---GDRPKNAEDEFPGVCSMPRGCYEPWGIFRKPVPKGMTIGECLRT 200

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK-PGDIILD 229
            +      +   +    +       + +     HP+ KP++ L +I+ +S      I+LD
Sbjct: 201 FQTGGLRRKPDGNPFEDVIESERTPQKERYIADHPSLKPQSFLRQIVYASLPLGEGIVLD 260

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
           PF GSG++ A A+ +  S +G+E  ++Y  ++ + I ++  L + 
Sbjct: 261 PFMGSGSTVAAAEAVGYSALGVEQYREYFLMSLQSIPALSSLDSE 305


>gi|24214246|ref|NP_711727.1| DNA methyltransferase [Leptospira interrogans serovar Lai str.
           56601]
 gi|24195157|gb|AAN48745.1| DNA methyltransferase [Leptospira interrogans serovar Lai str.
           56601]
          Length = 364

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 57/277 (20%), Positives = 98/277 (35%), Gaps = 25/277 (9%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            +I   +S      L ++SVDL+   PPY +           S         D   S+E 
Sbjct: 6   HRIHFRDSRETFP-LDSESVDLVLTSPPYPMIEMWDELFFGFSREIQKNFLIDPNLSYEQ 64

Query: 81  YDAFTRAWLLACRRVLKPNGTL------------WVIGSYHNIFRIGTMLQNLNFWILND 128
                        RVLK  G L            +    Y N  RI     ++ F  L  
Sbjct: 65  MHFELDKVWKESFRVLKNGGFLVINIGDATRNTAFGFRIYMNHARILQGCNSIGFQSLPG 124

Query: 129 IVWRKSNPMPN--------FRGRRFQNAHETLIWASPSPKAKGYTF-NYDALKAANEDVQ 179
           I+W+K    P           G      HE ++    + + K  T     +   +    +
Sbjct: 125 ILWKKQTNSPTKFMGSGTLPAGAYVTLEHEHILIFRKNNRRKFSTKSERLSRMESAFFWE 184

Query: 180 MRSDWLIPICSGSERLRNKDG---EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
            R+ W   +     + +        +      P  L +RI++  +  GDI+LDPF G+GT
Sbjct: 185 ERNFWFTDVWDFKGKKQGLSSLLAGRERSAAYPLELANRIILMYSLKGDIVLDPFLGTGT 244

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           +   A    R+ IG +++   + +  + + S++   N
Sbjct: 245 TTLAAIGNCRNSIGFDLEPGLLKVQLENLHSIKDKLN 281


>gi|224369183|ref|YP_002603347.1| two component protein (ParB-like partition domain/site-specific DNA
           modification methylase) [Desulfobacterium autotrophicum
           HRM2]
 gi|223691900|gb|ACN15183.1| two component protein (ParB-like partition domain/site-specific DNA
           modification methylase) [Desulfobacterium autotrophicum
           HRM2]
          Length = 530

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 62/312 (19%), Positives = 107/312 (34%), Gaps = 64/312 (20%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +   ++   + +LP +SV L+   PPY   +  +L                   +++ + 
Sbjct: 225 VYFKDAKD-MAELPKESVGLVLTSPPYFNGMEYELG-----------------FTYDEHL 266

Query: 83  AFTRAWLLACRRVLKPNGTLWVI----------GSYHNIFRIGTML-------QNLNFWI 125
              +  L    RVL   G L +               N  RI  ML       +   F +
Sbjct: 267 ENVKGVLAESARVLVKGGILALNVADITNFKGKNGTDNRSRIQPMLHFYNLCLRKHGFHL 326

Query: 126 LNDIVWRKSNPM------------PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
            ++I+W K +                    R  + HE +         KG          
Sbjct: 327 QDEIIWVKDSNSFTQDDAVNYTDKTVHTQYRIVDRHEPIYIFKK----KGDRPIPSDENI 382

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
             +    + +W +     + ++      + HP   P+ L  RI+   +  GD +LDPF G
Sbjct: 383 ILQSRISKEEWKV-YAPSAWQISPAPRNQGHPNAFPDELARRIIRMYSFVGDTVLDPFLG 441

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFN-- 291
           SGT+  VA++L R  +G E    Y     +++   +            +R EP   F   
Sbjct: 442 SGTTVKVARELDRDGVGYERDLRYKAAIMRKLGVAE----------VEERQEPVSDFAAR 491

Query: 292 LLVERGLIQPGQ 303
            L E    QPG+
Sbjct: 492 QLEELEANQPGK 503


>gi|163796619|ref|ZP_02190578.1| ParB domain protein nuclease [alpha proteobacterium BAL199]
 gi|159178179|gb|EDP62724.1| ParB domain protein nuclease [alpha proteobacterium BAL199]
          Length = 437

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 83/250 (33%), Gaps = 29/250 (11%)

Query: 21  DKIIKGNSI--SVLEKLPAKSVDLIF--ADPPYNLQLNGQLYRPDHSLVD-AVTDSWDKF 75
            +++ G+S     + +L       +    DPPY +  +G  +   +     +   +WD  
Sbjct: 176 HRLLCGDSTKPEDVRRLMNGE-RAVLFATDPPYLVDYDGSNHPTRNKDWSHSYGVTWDDS 234

Query: 76  S-SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
           S   + YD F  A +      +  +   +   +      +    +    ++   I+W K 
Sbjct: 235 SQGSDLYDGFIAAAVAEA---ISEDAAWYCWHASRRQAMLEACWEKAGAFVHQQIIWVKD 291

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
             +       +   HE        P                 D  + S W +P  +  ER
Sbjct: 292 RGV--LTRSHYLWKHEPCFMGWRRPN----------RPPKVADETLASTWELPSFAKDER 339

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                    HPT KP       +      G +  +PF GSG+     +   R    +E+ 
Sbjct: 340 PD-------HPTPKPLDAFGIPMRQHVARGGLCYEPFSGSGSQIMAGEANGRRVYAMEIS 392

Query: 255 QDYIDIATKR 264
             Y+D+A +R
Sbjct: 393 PAYVDVAIER 402


>gi|159028775|emb|CAO89946.1| pvuIIM [Microcystis aeruginosa PCC 7806]
          Length = 883

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 65/320 (20%), Positives = 113/320 (35%), Gaps = 73/320 (22%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLN----------------------GQLYRPD 61
             GNS++++ +LP +SVDLI   PP+ L                          ++ +P 
Sbjct: 27  YLGNSLTLMGELPDESVDLICTSPPFALVRKKEYGNVDADDYVEWFKIFAGEFYRILKPK 86

Query: 62  HSLVDAVTDSWDK------FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF--- 112
            SLV  +  SW K         FE      +  L             W   +        
Sbjct: 87  GSLVIDIGGSWLKGFPVRSLYHFELVIELCKPRLEGGLGFFLAQELFWYNPAKLPTPAEW 146

Query: 113 ------RIGTMLQNLNFWILNDIVWRKSN-----PMPNFRGRRFQNAHETLIWASPSPKA 161
                 R+   + N  +W+  +   + +N     P         +N +E  +  S    +
Sbjct: 147 VTVRRERVKDAV-NTVWWLSKEPHPKANNKRVLRPYSEAMKNLIKNGYEAKLRPSGHDIS 205

Query: 162 KGYTFNYDALKAAN--------------------EDVQMRSDWLIPICSGS--------- 192
             +  +       N                     +  + +D   P+   S         
Sbjct: 206 TKFQNDRGGAIPPNIITDSIQERGASIGSPVLGEFNWILENDLGQPVNVISASNTASNDY 265

Query: 193 -ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
            +R   ++G K HP + P+AL   ++   T+PGD++LDPF GS  +G VA+ L R ++  
Sbjct: 266 YQRRCKEEGVKPHPARFPQALPEFVISLCTEPGDLVLDPFAGSNMTGRVAETLERRWLAF 325

Query: 252 EMKQDYIDIATKRIASVQPL 271
           E+ +DY+  +  R     PL
Sbjct: 326 ELNEDYMIASQFRFEQDAPL 345


>gi|121596379|ref|YP_988275.1| DNA methylase N-4/N-6 domain-containing protein [Acidovorax sp.
           JS42]
 gi|120608459|gb|ABM44199.1| DNA methylase N-4/N-6 domain protein [Acidovorax sp. JS42]
          Length = 545

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 67/328 (20%), Positives = 105/328 (32%), Gaps = 80/328 (24%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPD---------------- 61
           + +I+G+++  L+ L       V  IF DPPYN Q   + Y  +                
Sbjct: 39  NLLIQGDNLEALKALLPFYRGKVKCIFIDPPYNTQSAFEHYDDNLEHSQWLSMMLPRLQL 98

Query: 62  -HSLVDAVTDSWDKFSSFEAYD------------AFTRAWLLACRRVLKPNGTLWVIGSY 108
              L+      W      E +              F    +            +    +Y
Sbjct: 99  LRELLSEDGSIWVTIDDNEGHYLKVLMDEVFGRRNFIATVIWENFYGRSGTAAISPAHNY 158

Query: 109 -HNIFRIGTMLQNLNFWI--LNDIVWRKSNPMPNFRGRR-------FQNAHETLIWASPS 158
            H     G   +++   +    +   +  NP  + RG          +  HE L++   +
Sbjct: 159 IHCYSPSGDAWKHIRGLLPRSEESTSKYKNPDNDPRGPWRLGPIFAPEERHEGLMYTVTT 218

Query: 159 PKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK-------------------- 198
           P  +  +    +     E    R      I  G+    N                     
Sbjct: 219 PSGRQVSPPKGSHWRMVEVDFWRMVEEGRISFGANGTNNPAVKLFLNEVQAGVVPRSIWP 278

Query: 199 ------------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
                              GE    T KPE LL RIL  ++ PGD++LD F GSGT+ AV
Sbjct: 279 HSEAGHTQDAKREVMALFPGETPFGTPKPERLLQRILHIASNPGDLVLDSFLGSGTTAAV 338

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASV 268
           A K+ R +IGIEM +        R+  V
Sbjct: 339 AHKMGRRWIGIEMGEHAATHCLPRLQKV 366


>gi|168494847|ref|ZP_02718990.1| DNA methylase [Streptococcus pneumoniae CDC3059-06]
 gi|168494889|ref|ZP_02719032.1| DNA methylase [Streptococcus pneumoniae CDC3059-06]
 gi|168494942|ref|ZP_02719085.1| DNA methylase [Streptococcus pneumoniae CDC3059-06]
 gi|168495009|ref|ZP_02719152.1| DNA methylase [Streptococcus pneumoniae CDC3059-06]
 gi|307126208|ref|YP_003878239.1| DNA methylase [Streptococcus pneumoniae 670-6B]
 gi|183575130|gb|EDT95658.1| DNA methylase [Streptococcus pneumoniae CDC3059-06]
 gi|183575191|gb|EDT95719.1| DNA methylase [Streptococcus pneumoniae CDC3059-06]
 gi|183575250|gb|EDT95778.1| DNA methylase [Streptococcus pneumoniae CDC3059-06]
 gi|183575298|gb|EDT95826.1| DNA methylase [Streptococcus pneumoniae CDC3059-06]
 gi|306483270|gb|ADM90139.1| DNA methylase [Streptococcus pneumoniae 670-6B]
          Length = 224

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 95/252 (37%), Gaps = 36/252 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K + G+ + ++++ P    DL   DPPY      + +         V+  + + S    +
Sbjct: 3   KFLNGDCMDIMKQYPDNYFDLAIVDPPYFSGPEKRKFYGRKISPIGVSRLYGEIS---EW 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
               R +     RV K    +W +  +   F                IVW K N   +F 
Sbjct: 60  KIPNRDYFDELFRVSKNQ-IIWGVNYFDYSF------------GSGRIVWDKVNGQSSF- 105

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK--D 199
                 +   + + S     + + + ++ +                I  G  +  NK  +
Sbjct: 106 ------SDCEIAYCSYHDSTRLFRYMWNGMMQGK-----------SISEGHIQQGNKALN 148

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
             ++HPTQKP  L   +L +  K GD ILD   GS +S     +L   ++G E+ +   +
Sbjct: 149 EVRIHPTQKPVNLYLWLLQTYAKEGDKILDTHVGSASSLIACGELGFDYVGCEIDKSIFN 208

Query: 260 IATKRIASVQPL 271
           +A +R+ + +  
Sbjct: 209 LAQQRLDAYEKQ 220


>gi|45658071|ref|YP_002157.1| DNA methyltransferase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|45601312|gb|AAS70794.1| DNA methyltransferase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 364

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 57/277 (20%), Positives = 98/277 (35%), Gaps = 25/277 (9%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            +I   +S      L ++SVDL+   PPY +           S         D   S+E 
Sbjct: 6   HRIHFRDSRETFP-LDSESVDLVLTSPPYPMIEMWDELFFGFSREIQKNFLIDPNLSYEQ 64

Query: 81  YDAFTRAWLLACRRVLKPNGTL------------WVIGSYHNIFRIGTMLQNLNFWILND 128
                        RVLK  G L            +    Y N  RI     ++ F  L  
Sbjct: 65  MHFELDKVWRESFRVLKNGGFLVINIGDATRNTAFGFRIYMNHARILQGCNSIGFQSLPG 124

Query: 129 IVWRKSNPMPN--------FRGRRFQNAHETLIWASPSPKAKGYTF-NYDALKAANEDVQ 179
           I+W+K    P           G      HE ++    + + K  T     +   +    +
Sbjct: 125 ILWKKQTNSPTKFMGSGTLPAGAYVTLEHEHILIFRKNNRRKFSTKSERLSRMESAFFWE 184

Query: 180 MRSDWLIPICSGSERLRNKDG---EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
            R+ W   +     + +        +      P  L +RI++  +  GDI+LDPF G+GT
Sbjct: 185 ERNFWFTDVWDFKGKKQGLSSLLAGRERSAAYPLELANRIILMYSLKGDIVLDPFLGTGT 244

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           +   A    R+ IG +++   + +  + + S++   N
Sbjct: 245 TTLAAIGNCRNSIGFDLEPGLLKVQLENLHSIKDKLN 281


>gi|325529766|gb|EGD06617.1| DNA methylase [Burkholderia sp. TJI49]
          Length = 234

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 55/264 (20%), Positives = 94/264 (35%), Gaps = 49/264 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            +  G+   VLE LP    D++  DP               ++   +    D+       
Sbjct: 13  TLFLGDCREVLETLP--RADVVITDP------------VWPNVPAGLLQGHDRP------ 52

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                  L      ++    + ++    +  R  T +  L  + +  I+      MP + 
Sbjct: 53  ----YELLEEAIGAMRLPKRMVIVMRSDSDPRFLTAVTPLMPFFVAQILQYV---MPGYI 105

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           GR+         +  P     G                     LIP  S   + R +   
Sbjct: 106 GRKLGGNEIAYGFGEPIASGPGCH-------------------LIPGMSPKVQPRGRKAN 146

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HP  +       ++   ++ GD++LDPF GSGT+G  A +  R F GIE++  Y +IA
Sbjct: 147 -GHPCSRALEHFDWLMRFWSEDGDMVLDPFMGSGTTGVAAIRAGRKFTGIEIEPKYFEIA 205

Query: 262 TKRIASVQPLGNIELTVLTGKRTE 285
            +RI   Q   ++  +  T KR E
Sbjct: 206 CRRIEDAQRQESLFTS--TPKRAE 227


>gi|291528646|emb|CBK94232.1| DNA modification methylase [Eubacterium rectale M104/1]
          Length = 307

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 55/253 (21%), Positives = 101/253 (39%), Gaps = 29/253 (11%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +++G+    L  +   S+D IF D P+                  +  +     +F  YD
Sbjct: 66  VLEGDGRD-LSIIEDNSIDCIFTDHPWL----------------DIKSNKGGTRAFAVYD 108

Query: 83  AF--TRAWLLACRRVLKPNGTLWVI------GSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            F  T        RVLK    L  +       +Y  +++I    +   F   + + W+K 
Sbjct: 109 CFKYTLDDFKEKARVLKDGCFLVEVLPAENENNYEYLYQIKQYAKEAGFIYYSKVAWKKG 168

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
             + N  GR+ +N  + +I+ S               +            ++P     + 
Sbjct: 169 TFVSN-TGRKAKNTQDIMIF-SKGKARNMRIDTKRTEQTGKLTYMSGCKGMLPTMFDVQP 226

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           +  K+  ++H ++ P +L  +IL   T  G+++LD F GSG  G  A  L+R+ I IE+ 
Sbjct: 227 VSKKN--RIHQSELPVSLCEQILEFLTYEGEVVLDSFAGSGAVGEAALNLKRNCILIEIL 284

Query: 255 QDYIDIATKRIAS 267
           +D I+   KR  +
Sbjct: 285 KDNIEKIKKRFEN 297


>gi|301166968|emb|CBW26547.1| putative methylase [Bacteriovorax marinus SJ]
          Length = 260

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 64/260 (24%), Positives = 117/260 (45%), Gaps = 31/260 (11%)

Query: 21  DKIIKGNSI------SVLEKLPAKSVDLIFADPPYNL-----QLNGQLYRPDHSLVDAVT 69
            + I G+S       S+++    +   +++ADPPY L     +  G L  P  + ++   
Sbjct: 17  HRHINGDSTIGSNYESIMQ---GEKAQMLYADPPYCLLVRRNKKTGALRDPKKAKINH-- 71

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF-WILND 128
           ++  ++ + +AY  FTR WL    + +  +GTL +  +Y  I  I  +   L +     +
Sbjct: 72  EAVTRYENTKAYKYFTRNWLSEAVKHISEDGTLVIWTNYLGIKPIKDVALELGYEHFYGE 131

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
            +W K     N         +E  +  S  PK           + +N D+ ++      I
Sbjct: 132 FLWGKLAKETNSGNETNVRLYEVALVFSKIPKK----------ELSNSDLPLQW----SI 177

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
            +  +          HP  KP + L  ++ + T+PGD +LDPF GSG++ A   +L R  
Sbjct: 178 ITKYDEEGEATKWDNHPNHKPFSSLEPLIRNFTRPGDRVLDPFTGSGSTPAACIQLGRKI 237

Query: 249 IGIEMKQDYIDIATKRIASV 268
            GIE+++ + DI+ +RIA +
Sbjct: 238 SGIELREHWADISQRRIAEL 257


>gi|313125852|ref|YP_004036122.1| DNA modification methylase [Halogeometricum borinquense DSM 11551]
 gi|312292217|gb|ADQ66677.1| DNA modification methylase [Halogeometricum borinquense DSM 11551]
          Length = 372

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 57/345 (16%), Positives = 110/345 (31%), Gaps = 59/345 (17%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDKF 75
            E + +++ G++ + +  +   +V+L+   PPY  +++   L+              D  
Sbjct: 1   MESRHRVVVGDART-MSDIADDAVELVVTSPPYPMVEMWDDLFSELTDEAGPALRDGDGE 59

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLW------------VIGSYHNIFRIGTMLQNLNF 123
           ++FEA  +          RVL P G                   Y N  R+      L F
Sbjct: 60  AAFEAMHSALDDVWAEISRVLVPGGIACINVGDATRTVGDSFRVYPNHARVTDAFVELGF 119

Query: 124 WILNDIVWR-KSNPMPNFRGR-------RFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
             L D++WR  +N    F G             HE ++       ++ +         + 
Sbjct: 120 EPLPDVLWRKPTNSAAKFMGSGMIPPNAYVTLEHEYVLVFRNGTDSRAFDPGETRRYESA 179

Query: 176 EDVQMRSDWLIPICSGSERLRNK------------------------------DGEKLHP 205
              + R+ W   + +       +                              D  +   
Sbjct: 180 YFWEERNAWFSDVWTDVAGTGQEVAARTRAHTGSGDGEIADGGNVYDLDAESGDELRERT 239

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
              P  +  R++   +  GD +LDPFFG+GT+   A    R  +G E++  ++D    R 
Sbjct: 240 AAFPFEIPYRLVNMYSVYGDTVLDPFFGTGTTSLAAMVAGRDSVGYELEDAFVDAFDARA 299

Query: 266 ASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQG 310
                L    +        E        VE+ + +      +A+ 
Sbjct: 300 TGAPTLSREVVEARLDDHRE-------FVEKRIEKGSPPGYDAEN 337


>gi|126444474|ref|YP_001063378.1| DNA methylase [Burkholderia pseudomallei 668]
 gi|126223965|gb|ABN87470.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei 668]
          Length = 232

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 86/248 (34%), Gaps = 47/248 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            +  G+   VLE LP    D++  DP               ++   +    D+       
Sbjct: 11  TLYLGDCREVLETLP--RADVVITDP------------VWPNVPAGLLQGHDRP------ 50

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                  L      ++    + ++    +  R  T +  L  + +  I+      MP + 
Sbjct: 51  ----YELLEEAIGAMRLPKRMVIVMRSDSDPRFLTAVTPLMPFFVAQILQYV---MPGYI 103

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           GR+         +  P     G                     LIP  S   + R +   
Sbjct: 104 GRKLGGNEIAYGFGEPIASGPGCH-------------------LIPGMSPKVQPRGRKAN 144

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HP  +       ++   ++  D++LDPF GSGT+G  A +  R F GIE++  Y +IA
Sbjct: 145 -GHPCSRALEHFDWLMRFWSEDDDMVLDPFMGSGTTGVAAIRAGRKFTGIEIEPKYFEIA 203

Query: 262 TKRIASVQ 269
            +RI   Q
Sbjct: 204 CRRIEDAQ 211


>gi|3914078|sp|O59647|MTMW_METWO RecName: Full=Modification methylase MwoI; Short=M.MwoI; AltName:
           Full=N-4 cytosine-specific methyltransferase MwoI
 gi|2961238|gb|AAC05700.1| MwoI DNA modification methyltransferase [Methanothermobacter
           wolfeii]
          Length = 668

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 69/280 (24%), Positives = 107/280 (38%), Gaps = 56/280 (20%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K KI+ G+  S L  L   S+ +    PPY  Q +                   +  + E
Sbjct: 3   KGKILFGDVFSALRCLEDNSISVALTSPPYWRQRDY-----------GFKGQIGREKTPE 51

Query: 80  AYDAFTRAWLLACRRVLKPNGTLW-VIGSYHNI-----------FRIGTMLQNLNFWILN 127
            Y           R  LK +G  +  IG  +             +R+   +    + +L+
Sbjct: 52  EYIGRLIVIFRELRAKLKDDGVFFLNIGDKYKNRYGKSHLLQIPYRLAAHMIKDGWKLLD 111

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
            I+W K N MP+    RF N +E ++    S                N   +      IP
Sbjct: 112 IIIWYKPNHMPSSVKDRFTNTYEPVLVFGKSD--------------ENIYTKKHPVLKIP 157

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSST-KPGDIILDPFFGSGTSGAVAKKLRR 246
           +     +         H    PE L+S +L     K GD ILDPF G+GT+GAV KK++ 
Sbjct: 158 LQQTKWK---------HTAVFPEKLVSSLLSRCNLKDGDYILDPFAGTGTTGAVVKKMKY 208

Query: 247 -------SFIGIEMKQDYIDIATKR--IASVQPLGNIELT 277
                  + I IE  + ++DI T+R  I  ++ L + E T
Sbjct: 209 QLYPKDLNVILIEKGKKFLDIITERTGIKEIKELKSSEYT 248


>gi|294155855|ref|YP_003560239.1| adenine-specific DNA modification methyltransferase [Mycoplasma
           crocodyli MP145]
 gi|291600015|gb|ADE19511.1| adenine-specific DNA modification methyltransferase [Mycoplasma
           crocodyli MP145]
          Length = 323

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 60/310 (19%), Positives = 109/310 (35%), Gaps = 72/310 (23%)

Query: 31  VLEKLPAKSVDLIFADPPYN----LQLNGQLYRPDHSLVDAVTDSWDKFS---------- 76
            L+++  KSVD I  DPPY     +QL+GQ  + D  +     D +++F+          
Sbjct: 15  FLDEIDEKSVDFICIDPPYGKINGMQLSGQKTKIDWDVNIDWKDLFNRFTRVLKPGGTIA 74

Query: 77  -------------SFEAYDAFTRAWLLA----------CRRVLKPNGTLWVIG-SYHNIF 112
                            Y  +   W+                   N  ++++G +  N  
Sbjct: 75  VFGQNPTYSMMIIDNIKYYKYELIWVKNNAAQGFHADKMPLTFTENIAIFIVGENSKNKR 134

Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD--- 169
               + Q              +  + +F   + +  HE ++    S     YT       
Sbjct: 135 TFNNIAQKEEIDKNKHFTRWYAQSLYDFINIKRRKIHE-ILGHRKSEFFFCYTGKQFGLL 193

Query: 170 ----ALKAANEDVQMRSDWLIPICSGSERLRN--------------------------KD 199
                 +   +    + ++ IP     E+  N                          K+
Sbjct: 194 SEAIYNELIEKFAIDKWEFFIPYTQLKEKWVNEKSATQYIKLDSFNYSKTLPNYIFEQKE 253

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
              LHPTQKP  L+ R++   +  G++ILD F GSG++G  A  L R F+G E+ + +  
Sbjct: 254 IVYLHPTQKPVKLMERLIKMYSNEGNVILDCFMGSGSTGVAALNLNRKFLGCELDEQHFQ 313

Query: 260 IATKRIASVQ 269
            +  RI +++
Sbjct: 314 TSKNRIENIK 323


>gi|240013324|ref|ZP_04720237.1| putative modification methylase DpnIIB [Neisseria gonorrhoeae
           DGI18]
 gi|240120395|ref|ZP_04733357.1| putative modification methylase DpnIIB [Neisseria gonorrhoeae
           PID24-1]
          Length = 92

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 38/97 (39%), Positives = 57/97 (58%), Gaps = 5/97 (5%)

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
           +K  N+  QM+  W     + +E+   K     HPTQKP  LL R ++S++  GD+I DP
Sbjct: 1   MKTQNDGKQMKCVWTFAPPNKAEKTFGK-----HPTQKPLPLLERCILSASNIGDLIFDP 55

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           F GSGT+G  A K  R F G E+++D+ ++A KR+  
Sbjct: 56  FMGSGTTGVAALKHGRRFCGCELEEDFFELAKKRLEK 92


>gi|300871092|ref|YP_003785964.1| DNA methylase N-4/N-6 domain-containing protein [Brachyspira
           pilosicoli 95/1000]
 gi|300688792|gb|ADK31463.1| DNA methylase N-4/N-6 domain protein-like protein [Brachyspira
           pilosicoli 95/1000]
          Length = 283

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 59/277 (21%), Positives = 95/277 (34%), Gaps = 34/277 (12%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNG--------------QLYRPDHSLVDAVTDSWDKFSS 77
           +E+L + S++ I +DPPY    +               +    D+S++ A     D F  
Sbjct: 1   MEELESNSINAIASDPPYLYLKHKLDIPFNEDKVFGEWKRLLKDNSMI-AFFGRGDAFFR 59

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI--------------GTMLQNLNF 123
           +                  K N + ++         I                 L+    
Sbjct: 60  WNLILEKLGFKFKESAVWEKENASNYLNNFLRIHEDISFRSLGNANLRKEYTDYLEYQIN 119

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAH----ETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
               D +      + +    R ++      ET I        + Y       + A   V 
Sbjct: 120 KNKLDRIIDIWKGLKSALNGRDKDDVIKYIETGIKEFNYESKRKYEITARKHQGAKRGVN 179

Query: 180 -MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
             +S  +  I +   R   +  +  HPTQKP AL+ RI+   +   D ILDPF G G++G
Sbjct: 180 LFQSVKVGKIETSIMRCNREQYKYQHPTQKPVALMERIVKLISNENDTILDPFMGGGSTG 239

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
                + R FIGIE+  +Y D A  RI         E
Sbjct: 240 VACINVNRKFIGIELDDEYFDTAVNRITKAYQDKENE 276


>gi|34495460|ref|NP_899675.1| DNA methyltransferase [Chromobacterium violaceum ATCC 12472]
 gi|34101316|gb|AAQ57685.1| probable DNA methyltransferase [Chromobacterium violaceum ATCC
           12472]
          Length = 298

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 59/290 (20%), Positives = 104/290 (35%), Gaps = 63/290 (21%)

Query: 23  IIKGNSISVLEKLPAKSV--DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           I   +    +  L    V  + +   PP+  Q +             V            
Sbjct: 29  IFNMDVREAMGHLARAGVIVNCMVTSPPFYGQRDY-----------GVDGQIGLEEHPRD 77

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNI----------------------------- 111
           + A       A R VL  NG+LWV                                    
Sbjct: 78  FIANLVGCFEASRPVLAENGSLWVNLGDTYWSGKGEHKSGEGKQSARRFGLRPQDRTGDG 137

Query: 112 ------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
                        R    +Q+ ++ + ND VW K NP+P+    R   +HE +       
Sbjct: 138 ELCKPKQLLLIPHRFAIAMQDHDWLVRNDNVWVKPNPIPDQVRDRCSMSHEYVFHLVK-- 195

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVS 219
            ++ Y FN DA+   +         ++P     E    +   + H  +  E L+   +++
Sbjct: 196 -SRWYYFNKDAVGRKSASGS-----VLPPPDTWEVAPARSSHQ-HKARFSEELVRIPILA 248

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           +T PG ++LDPF GSGTS   A+K     IGI++K ++ ++  +++ S++
Sbjct: 249 TTPPGGVVLDPFGGSGTSLVFARKHGFRAIGIDLKAEFCELMVEQLRSLE 298


>gi|218441210|ref|YP_002379539.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
 gi|218173938|gb|ACK72671.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
          Length = 874

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 64/316 (20%), Positives = 115/316 (36%), Gaps = 75/316 (23%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLN----------------------GQLYRPD 61
             G+S+ VL ++P +S+DLI   PP+ L                          ++ + +
Sbjct: 17  YLGDSLKVLSQIPDESIDLICTSPPFALVRKKEYGNVDADEYVQWFDSFAQQFYRILKQN 76

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG--SYHNIF------- 112
            SLV  +  SW K     +   F    +  C+   +     ++     ++N         
Sbjct: 77  GSLVIDIGGSWIKGYPVRSLYHF-ELVMHLCKPRREGGLGFYLAQELYWYNPAKLPTPAE 135

Query: 113 -------RIGTMLQNLNFWILNDIVWRKSN-----PMPNFRGRRFQNAHETLIWASPSPK 160
                  R+   + N  +W+  D   +  N     P         +N ++  +  S    
Sbjct: 136 WVTVRRERVKDAV-NTIWWLSKDPHPKACNKRVLRPYSKAMENLLKNGYDAKLRPSGHDI 194

Query: 161 AKGYTFNYDALKAAN--------------------EDVQMRSDWLIPICSGS-------- 192
           +  +  N       N                     D  + +D   P+   S        
Sbjct: 195 STKFQRNRGGAIPPNIIDAQTTSVATAIGSPVLASFDWLLFNDLAQPVNVISASNTASND 254

Query: 193 --ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
             +R   ++G K HP + P+AL   I+   T+PGD++LDPF GS  +G VA+ L+R ++ 
Sbjct: 255 YYQRRCKEEGIKPHPARFPQALPEFIINLCTEPGDLVLDPFCGSNVTGRVAEDLKRYWLA 314

Query: 251 IEMKQDYIDIATKRIA 266
           IE+ Q Y+  +  R  
Sbjct: 315 IEIDQGYLKASQYRFE 330


>gi|296112748|ref|YP_003626686.1| modification methylase MboIB [Moraxella catarrhalis RH4]
 gi|295920442|gb|ADG60793.1| modification methylase MboIB [Moraxella catarrhalis RH4]
 gi|326563756|gb|EGE14007.1| modification methylase MboIB [Moraxella catarrhalis 46P47B1]
 gi|326564371|gb|EGE14599.1| modification methylase MboIB [Moraxella catarrhalis 12P80B1]
 gi|326566776|gb|EGE16915.1| modification methylase MboIB [Moraxella catarrhalis 103P14B1]
 gi|326567381|gb|EGE17496.1| modification methylase MboIB [Moraxella catarrhalis BC1]
 gi|326569906|gb|EGE19956.1| modification methylase MboIB [Moraxella catarrhalis BC8]
 gi|326571492|gb|EGE21507.1| modification methylase MboIB [Moraxella catarrhalis BC7]
 gi|326575225|gb|EGE25153.1| modification methylase MboIB [Moraxella catarrhalis CO72]
 gi|326577637|gb|EGE27514.1| modification methylase MboIB [Moraxella catarrhalis O35E]
          Length = 112

 Score =  112 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 44/113 (38%), Positives = 67/113 (59%), Gaps = 5/113 (4%)

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
           +K  N D Q +  W +P     E+ + K     HPTQKP  LLSRI++SST+ GD+ILDP
Sbjct: 1   MKKLNGDKQAKDVWRLPAVGSWEKTQGK-----HPTQKPLGLLSRIILSSTQKGDLILDP 55

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
           F GSGT+G  A  L R FIGI+ + ++++++ +R  ++ P    E      ++
Sbjct: 56  FSGSGTTGIAATILGRQFIGIDKELEFLELSKRRYQAITPKSKYEFKQKIREQ 108


>gi|300689932|ref|YP_003750927.1| site-specific DNA-methyltransferase [Ralstonia solanacearum PSI07]
 gi|299076992|emb|CBJ49605.1| putative Site-specific DNA-methyltransferase [Ralstonia
           solanacearum PSI07]
          Length = 467

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 59/310 (19%), Positives = 97/310 (31%), Gaps = 61/310 (19%)

Query: 21  DKIIKGNSIS--VLEKL-PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            ++I G++    V+  L   +   L F  PPY  Q N                       
Sbjct: 175 HRLICGDAADSDVIATLMAGQQAALCFTSPPYANQRNYTTG------------------G 216

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH-------NIFRIGTMLQNLNFWILNDIV 130
              +D   R        +      L  +G  H               ++   +      V
Sbjct: 217 IADWDVLMRGVFDNV-PMAGGGQVLVNLGLVHRDSEVVPYWDAWIAWMRTQGWRRFGWYV 275

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W +   MP     R   + E +   +   +    T      K A  D  +R D       
Sbjct: 276 WDQGPGMPGDWMGRLAPSFEFVFHFNREARRPNKT---VPCKFAGRDEHLRPDGTSTSMR 332

Query: 191 G--------------------------SERLRNKDGEKL-HPTQKPEALLSRILVSSTKP 223
           G                            R + K G  + HP   P AL   ++ + +  
Sbjct: 333 GRDGVRGSWTHKGKLTQDTRIPDSVIRVMRHKGKIGRDIDHPAVFPVALPKFVIEAYSDA 392

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
           GDI+ +PF GSGT+   A++  R    +E+  +Y+D+A KR    Q      +T+ +  +
Sbjct: 393 GDIVFEPFGGSGTTMLAAQRTGRQCRSVEIAPEYVDVAIKRFQ--QSYPEAPVTLQSTGQ 450

Query: 284 TEPRVAFNLL 293
               VA   L
Sbjct: 451 PFAAVAAERL 460


>gi|109897009|ref|YP_660264.1| DNA methylase N-4/N-6 [Pseudoalteromonas atlantica T6c]
 gi|109699290|gb|ABG39210.1| DNA methylase N-4/N-6 [Pseudoalteromonas atlantica T6c]
          Length = 230

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 91/247 (36%), Gaps = 37/247 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNL----QLNGQLYRPDHSLVDAVTDSWDKFSS 77
            + + +++  L   P +SV+LI  DP Y      +  G   R  +S  DA +++W     
Sbjct: 6   TVHRQDAVDWLHMQPNQSVNLIVTDPAYQSLEKHRAKGTTTRLKNS--DASSNAWFAIFP 63

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            + +  F     +   RVL  N  ++V+        I  + + + F     I W K    
Sbjct: 64  NDRFFDF----FIEAYRVLDDNSHMYVMCDQETGLLIKPIAEQVGFKFWKFITWDKC--- 116

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
               G  ++N  E +++     +                         +      + LR+
Sbjct: 117 AMGMGYHYRNQTEWVMFLEKGKRK------------------------LNNLGMCDVLRH 152

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K     +PT+KP  L + ++  ST   + + D FFGSG     A  L R  IG ++    
Sbjct: 153 KRVRNGYPTEKPMQLYADLIEQSTNIDETVADVFFGSGAGLLAAHNLGRKAIGTDISDAA 212

Query: 258 IDIATKR 264
                +R
Sbjct: 213 HAYLQQR 219


>gi|163796705|ref|ZP_02190663.1| ParB domain protein nuclease [alpha proteobacterium BAL199]
 gi|159177959|gb|EDP62506.1| ParB domain protein nuclease [alpha proteobacterium BAL199]
          Length = 437

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 80/249 (32%), Gaps = 27/249 (10%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD-AVTDSWDKFS 76
            +++ G+S     V   +  +   L   DPPY +  +G  +   +     +   +WD  S
Sbjct: 176 HRLLCGDSTKPEDVQHLMNGERAALFATDPPYLVDYDGSNHPTRNKDWSHSYGVTWDDSS 235

Query: 77  -SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
              + YD F  A +      +  +   +   +      +    +    ++   I+W K  
Sbjct: 236 QGSDLYDGFIAAAVAEA---ITEDAAWYCWHASRRQAMLEACWEKAGAFVHQQIIWVKDR 292

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            +       +   HE        P                        W +P  +  ER 
Sbjct: 293 GV--LTRSHYLWKHEPCFMGWRRPNRPPKVAEETLAST----------WALPSFARDERP 340

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                   HPT KP       +      G +  +PF GSG+     +   R    +E+  
Sbjct: 341 D-------HPTPKPLDAFGIPMRQHVARGGLCYEPFSGSGSQIMAGEANGRRVYAMEISP 393

Query: 256 DYIDIATKR 264
            Y+D+A +R
Sbjct: 394 AYVDVAVER 402


>gi|163796565|ref|ZP_02190524.1| ParB domain protein nuclease [alpha proteobacterium BAL199]
 gi|159178125|gb|EDP62670.1| ParB domain protein nuclease [alpha proteobacterium BAL199]
          Length = 437

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 83/249 (33%), Gaps = 27/249 (10%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD-AVTDSWDKFS 76
            +++ G+S     V   +  +   L   DPPY +  +G  +   +     +   +WD  S
Sbjct: 176 HRLLCGDSTKPEDVQHLMNGERAVLFATDPPYLVDYDGSNHPTRNKDWSQSYGVTWDDSS 235

Query: 77  -SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
              + YD F  A +      +  +   +   +      +    +    ++   I+W K  
Sbjct: 236 QGSDLYDGFIAAAVAEA---ITEDAAWYCWHASRRQGMLEACWEKAGAFVHQQIIWVKDR 292

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            +       +   HE        P                 D  + S W +P  +  ER 
Sbjct: 293 GV--LTRSHYLWKHEPCFMGWRRPN----------RPPKVADDTLPSTWELPSFAKDERP 340

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                   HPT KP       +      G +  +PF GSG+     +   R    +E+  
Sbjct: 341 D-------HPTPKPLDAFGIPMRQHVARGGLCYEPFSGSGSQIMAGEANGRRVYAMEISP 393

Query: 256 DYIDIATKR 264
            Y+D+A +R
Sbjct: 394 AYVDVAVER 402


>gi|306824121|ref|ZP_07457493.1| DNA (cytosine-5-)-methyltransferase [Bifidobacterium dentium ATCC
           27679]
 gi|304552657|gb|EFM40572.1| DNA (cytosine-5-)-methyltransferase [Bifidobacterium dentium ATCC
           27679]
          Length = 95

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/97 (42%), Positives = 62/97 (63%), Gaps = 5/97 (5%)

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
           +K  N   QM+  W   +    E++  K     HPTQKP  LL RI++SST+PGD++LDP
Sbjct: 1   MKEMNGGKQMKDVWTGSLTPKREKIEGK-----HPTQKPLYLLERIILSSTEPGDLVLDP 55

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           F GS T+G  A+KL R +IGI+ + +YI+++ +R+  
Sbjct: 56  FCGSSTTGVAAQKLGRKYIGIDNEPEYIELSKRRLQK 92


>gi|317505265|ref|ZP_07963195.1| DNA (cytosine-5-)-methyltransferase domain protein [Prevotella
           salivae DSM 15606]
 gi|315663609|gb|EFV03346.1| DNA (cytosine-5-)-methyltransferase domain protein [Prevotella
           salivae DSM 15606]
          Length = 668

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 64/374 (17%), Positives = 121/374 (32%), Gaps = 98/374 (26%)

Query: 21  DKIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLY---RPDHSLVDAVT------ 69
           + +++G  +S    L  K   VDL++ DPP+    +       R +  + +A+       
Sbjct: 63  NLVLRGECLSACAYLKDKGMKVDLVYIDPPFASGADYAKKVYIRRNPKVAEAIKQAETEI 122

Query: 70  --------------DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
                         D WDK    E Y  +    L+A + V+    +++V   +H    + 
Sbjct: 123 DSEELRNFEEKMYGDVWDK----ERYLNWMYENLMAIKSVMSDTASIYVHLDWHIGHYVK 178

Query: 116 TMLQNLN--FWILNDIVWRKSNPMPNFRGR--------RFQNAHETLIWASPSPKAKGYT 165
            ++  +       N+IVW++     +             +   +E   W       +   
Sbjct: 179 ILMDEIFGEDNFRNEIVWQRVYSHNDANKYGQIHDVIFYYSKDNEKYTWNIQYQPYEEKY 238

Query: 166 FNYDALKAANEDVQMRSDWLIPI-------CSGSERLRNKDGEKL--------------- 203
               ++   +       + L P         +G  R      E +               
Sbjct: 239 LKMYSMDDGDGRKYKVENTLGPGGRGSTYEWNGVVRTWRYSFETMSELEKQGLLYYTSSG 298

Query: 204 -----------------------------------HPTQKPEALLSRILVSSTKPGDIIL 228
                                              + TQKPEALL RI+ +S+  G ++ 
Sbjct: 299 FPKKKIYLDEMPGKPLQSIWTDINVIAGQAKELVDYATQKPEALLERIIKASSNEGMLVA 358

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
           D F GSG +  VA KL R+FI  ++  + I+    R+         E+  +    +  R 
Sbjct: 359 DFFGGSGVTATVASKLGRNFIHCDIGINSIETTRDRLRKA--GAEFEVMEVKDGVSLYRN 416

Query: 289 AFNLLVERGLIQPG 302
               + +   + PG
Sbjct: 417 PVQTMDKLKSLIPG 430


>gi|163797566|ref|ZP_02191516.1| ParB domain protein nuclease [alpha proteobacterium BAL199]
 gi|159177165|gb|EDP61725.1| ParB domain protein nuclease [alpha proteobacterium BAL199]
          Length = 439

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 79/250 (31%), Gaps = 29/250 (11%)

Query: 21  DKIIKGNSI--SVLEKLPAKSVDLIF--ADPPYNLQLNGQLYRPDHSLVD-AVTDSWDKF 75
            +++ G+S     + +L       +    DPPY +  +G  +   +     +   +WD  
Sbjct: 176 HRLLCGDSTKPEDVRRLMNGE-RAVLFATDPPYLVDYDGSNHPTRNKDWSHSYGVTWDDS 234

Query: 76  S-SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
           S   + YD F  A +      +  +   +   +      +    +    ++   I+W K 
Sbjct: 235 SQGSDLYDGFIAAAVAEA---ITEDAAWYCWHASRRQAMLEACWEKAGAFVHQQIIWVKD 291

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
             +       +   HE        P                        W +P       
Sbjct: 292 RGV--LTRSHYLWKHEPCFMGWRRPNRPPKVAEETLAST----------WPLP------- 332

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
              KD    HPT KP       +      G +  +PF GSG+     +   R    +E+ 
Sbjct: 333 SFAKDDRPDHPTPKPLDAFGIPMRQHVARGGLCYEPFSGSGSQIMAGEANGRRVYAMEIS 392

Query: 255 QDYIDIATKR 264
             Y+D+A +R
Sbjct: 393 PAYVDVAVER 402


>gi|163798191|ref|ZP_02192125.1| ParB domain protein nuclease [alpha proteobacterium BAL199]
 gi|159176528|gb|EDP61108.1| ParB domain protein nuclease [alpha proteobacterium BAL199]
          Length = 458

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 83/251 (33%), Gaps = 31/251 (12%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIF--ADPPYNLQLNGQLYRPDHSLVD-AVTDSWDK 74
            +++ G+S     V   +  +    +    DPPY +  +G  +   +     +   +WD 
Sbjct: 199 HRLLCGDSTKPEDVQHLMNGE--RAVLFATDPPYLVDYDGSNHPTRNKDWSQSYGVTWDD 256

Query: 75  FS-SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
            S   + YD F  A +      +  +   +   +      +    +    ++   I+W K
Sbjct: 257 SSQGSDLYDGFIAAAVAEA---ITEDAAWYCWHASRRQGMLEACWEKAGAFVHQQIIWVK 313

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
              +       +   HE        P                 D  + S W +P  +  E
Sbjct: 314 DRGV--LTRSHYLWKHEPCFMGWRRPN----------RPPKVADETLASTWELPSFAKDE 361

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           R         HPT KP       +      G +  +PF GSG+     +   R    +E+
Sbjct: 362 RPD-------HPTPKPLDAFGIPMRQHVARGGLCYEPFSGSGSQIMAGEANGRRVYAMEI 414

Query: 254 KQDYIDIATKR 264
              Y+D+A +R
Sbjct: 415 SPAYVDVAIER 425


>gi|207725436|ref|YP_002255832.1| dna modification methylase protein [Ralstonia solanacearum MolK2]
 gi|206590672|emb|CAQ37634.1| dna modification methylase protein [Ralstonia solanacearum MolK2]
          Length = 467

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 55/310 (17%), Positives = 99/310 (31%), Gaps = 61/310 (19%)

Query: 21  DKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            ++I G++     +   +  +   L F  PPY  Q N                       
Sbjct: 175 HRLICGDATDGAVIAALMAGQQATLCFTSPPYANQRNYTSG------------------G 216

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH-------NIFRIGTMLQNLNFWILNDIV 130
              +D   R        ++     L  +G  H               ++   +      V
Sbjct: 217 IADWDVLMRGAFGNA-PMVGDGQVLVNLGLVHRDSEVVPYWDAWIGWMRTQGWRRFGWYV 275

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD------- 183
           W +   MP     R   + E +   +   +    T      K A +D  +R D       
Sbjct: 276 WDQGPGMPGDWMGRLGPSFEFVFHFNREARRPNKT---VPCKFAGKDEHLRPDGTSTSMR 332

Query: 184 --------WLIP--------ICSGSERLRNKDGEKL----HPTQKPEALLSRILVSSTKP 223
                   W           I     R+    G+      HP   P AL   ++ + +  
Sbjct: 333 NKAGVRGSWTHEGQVTQDTRIPDSVIRVMRHKGKIGKGIDHPAVFPVALPEFVIGAYSDA 392

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
           GD++ +PF GSGT+   A++  R    +E+  +Y+D+A +R    Q    + +T+ +  +
Sbjct: 393 GDVVFEPFGGSGTTMLAAQRTGRLCRSVEIAPEYVDVAIQRFQ--QNYPEVPVTLQSTGQ 450

Query: 284 TEPRVAFNLL 293
           T    A   L
Sbjct: 451 TFAEAAAQRL 460


>gi|160700711|ref|YP_001552391.1| gp62 [Mycobacterium phage Giles]
 gi|159136661|gb|ABW88457.1| gp62 [Mycobacterium phage Giles]
          Length = 220

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 91/249 (36%), Gaps = 46/249 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS--LVDAVTDSWDKFSSFE 79
            +  G+   V   L     D +  DPPY +        P  S  ++++ TD+  + ++ +
Sbjct: 11  TLFHGDCRDVDAWLD---ADALITDPPYGIAYRSGRPNPKGSPRVIESDTDTAARDAALD 67

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            + AF                   V GS+      GT            +VW K+     
Sbjct: 68  MWAAF-------------GGAQAAVFGSWKIPRPAGT---------HTVLVWSKNTSGMG 105

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
              + F  +HE +       K  G+                       + + +E  +   
Sbjct: 106 DLAQPFGPSHEEIYLLGRWSKPDGFK------------------RRGSVIATTEHPQRTA 147

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
               HPT KP  L+  +LVS+T  G  I DPF G G +   A+ L R  IG+E+ + Y +
Sbjct: 148 ELVAHPTPKPVGLME-VLVSATPDGASIADPFAGGGATLLAARNLGRKAIGVEIDERYCE 206

Query: 260 IATKRIASV 268
           +   R++ +
Sbjct: 207 VIANRLSQM 215


>gi|172037500|ref|YP_001804001.1| DNA methylase N-4/N-6 [Cyanothece sp. ATCC 51142]
 gi|171698954|gb|ACB51935.1| DNA methylase N-4/N-6 [Cyanothece sp. ATCC 51142]
          Length = 371

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 74/316 (23%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLN----------------------GQLYRPD 61
              NS+ +++++P +S+DLI   PP+ L                          ++ +P 
Sbjct: 27  YLANSLKLMKEIPNESIDLICTSPPFALVRKKDYGNVEAEQYIEWFEPFAKEFYRILKPQ 86

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI--GSYHNIF------- 112
            SL   +  SW K     +   F    +  CR   K     ++     ++N         
Sbjct: 87  GSLAIDIGGSWVKGYPIRSLYHF-ELVVHLCRPQNKGGLGFYLAQEIYWYNPAKLPTPAE 145

Query: 113 -------RIGTMLQNLNFWILNDIVWRKSN-----PMPNFRGRRFQNAHETLIWASPSPK 160
                  R+   + N  +W+  +   + +N     P         +N ++  +  S    
Sbjct: 146 WVTVRRERVKDAV-NTIWWLCKEPHPKANNRNVLKPYSKAMKNLLKNGYKAKLRPSGHDI 204

Query: 161 AKGYTFNYDALKAAN-----------------EDVQMRSDWLIPICSGS----------- 192
           +  +  +       N                  D     +  +PI               
Sbjct: 205 STKFKNDRGGAIPPNIINTQDVEGSEIGDILIFDENDSENLYVPISGNVISASNTSSNDY 264

Query: 193 -ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
            ++   ++G K HP + P+AL    +   T+ GDI+LDPF GS  +G VA+ L R +I I
Sbjct: 265 YQKRCKQEGIKRHPARFPQALPEFFINLCTEVGDIVLDPFAGSNMTGKVAETLDRKWIAI 324

Query: 252 EMKQDYIDIATKRIAS 267
           E++++Y+  +  R  S
Sbjct: 325 EIEEEYVKGSKLRFES 340


>gi|256005294|ref|ZP_05430260.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum DSM
           2360]
 gi|255990730|gb|EEU00846.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum DSM
           2360]
 gi|316939535|gb|ADU73569.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum DSM
           1313]
          Length = 623

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 55/328 (16%), Positives = 110/328 (33%), Gaps = 67/328 (20%)

Query: 19  WKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNG-QLYRPDHSLVDAVTD---- 70
           W +++  G+++ V+  L  +    + LI+ DPP++ + +  +  R     ++  T     
Sbjct: 52  WVNRLYWGDNLQVMSHLMKEFRGKIKLIYIDPPFDSKADYRKRIRLRGKQLEGDTSVIEE 111

Query: 71  -SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI-------------------GSYHN 110
             +    + + Y  F    L   R +L   G +++                     +Y N
Sbjct: 112 KQYTDIWANDLYLQFMYERLQLMRELLSEEGFIFIHLNDERVHYIKIILDEIFGNSNYRN 171

Query: 111 IFRIGTM----LQNLNFWILND------IVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
              +  +    ++    +  N+      +  +  NP      +      E          
Sbjct: 172 QIIVKRIKKSYIEQSGVFSFNEGCDYILLYSKSENPRLRPSLKYA-PKEERWHGFDAPNI 230

Query: 161 AKGYTFNYDALKAANEDVQ----------------------MRSDWLIPICSGSER---- 194
               T+                                    + ++ IP      R    
Sbjct: 231 RPNLTYELFGQLPPPGRHWLKSPEEAQKMIEAGDLRPNPNTGKPEYRIPATEYISRDNLW 290

Query: 195 --LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
             +        +PT+K E LL  IL  ++ PGD++ D F GSGT+ AVA+KL R +IG +
Sbjct: 291 DDITASAFTTGYPTEKNETLLEEILNVASNPGDLVADFFCGSGTTMAVAQKLGRRWIGSD 350

Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLT 280
           +    +    +R++ +      E    T
Sbjct: 351 INLGAVHTTARRVSQIIKEQQEETRQQT 378


>gi|134297344|ref|YP_001121079.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134140501|gb|ABO56244.1| DNA methylase N-4/N-6 domain protein [Burkholderia vietnamiensis
           G4]
          Length = 447

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 96/282 (34%), Gaps = 47/282 (16%)

Query: 20  KDKIIKGNS---ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + ++I G++   + V   +  +   L F  PPY  Q +                 WD   
Sbjct: 149 QHRLICGDASDPLVVATLMQGEQASLCFTSPPYGNQRDYT---------SGGIADWDGLM 199

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY-HNIFRIGTMLQNLNFWILNDIVWRKSN 135
                  F    + A  +VL   G +     +     +    ++   +      VW +  
Sbjct: 200 RG----VFAHVPMAADGQVLVNLGLIHRDNEFIPYWDQWLDWMRTQGWRRFAWYVWDQGP 255

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE-- 193
            MP     R   + E +   +   +    T      K A ++  +R+D       G +  
Sbjct: 256 GMPGDWQGRLAPSFEFIFHFNRQTRKPNKT---VPCKFAGQETHLRADGSSTAMRGKDGQ 312

Query: 194 ------------------------RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIIL 228
                                   R + K G+ + HP   P  L   ++ + T  G+++ 
Sbjct: 313 VNGWTAAGQPTQDCRIPDSVIRVMRHKGKIGKDIDHPAVFPVTLPVEVIEAYTDEGEVVF 372

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
           +PF GSGT+   A++  R    +E+  +Y+D+A  R     P
Sbjct: 373 EPFGGSGTTLMAAQRTGRIGRAVEIAPEYVDVALLRFQQNFP 414


>gi|300784035|ref|YP_003764326.1| adenine-specific DNA-methyltransferase [Amycolatopsis mediterranei
           U32]
 gi|299793549|gb|ADJ43924.1| putative adenine-specific DNA-methyltransferase [Amycolatopsis
           mediterranei U32]
          Length = 345

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 62/336 (18%), Positives = 99/336 (29%), Gaps = 102/336 (30%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I+ G+    L +LP  SVD +   PPY    +     P     +   D+W    +     
Sbjct: 12  ILIGDVRQRLRELPDASVDCVITSPPYWALRDY--GHPGQIGAEPTVDAWADTIA----- 64

Query: 83  AFTRAWLLACRRVLKPNGTLW-VIGSYHNIF---------------RIGTMLQNLNFWIL 126
               A      RVL P G LW  +G   +                 R+   L    + + 
Sbjct: 65  ----AVCTELARVLTPTGALWLNLGDSFSRHEREGAAKKSLLLGPQRVALRLTASGWLLR 120

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY---------------------- 164
           N ++W K NP P+    RF  +HE L   +   +                          
Sbjct: 121 NQVIWAKPNPTPSSVRDRFTASHELLYLLTRQSRYFFDLDAVREPARTAPAGSAVKAART 180

Query: 165 TFNYDALKAANEDVQMRSD----------------WLIPICSGSERLRNKDGEKLHPTQK 208
               +A+ + N     R D                 L         +        H    
Sbjct: 181 YLTREAVPSLNGGSSPRVDLNQGLAQMKTTGLASHPLGKSPGDVWTIPTGSYRGAHFATF 240

Query: 209 PEALLSRILVSSTKPG-------------------------------------DIILDPF 231
           P AL+ R L+++                                           +LDPF
Sbjct: 241 PLALVRRPLLTTCPERVCAVCDLPWRRTPQLVDGRQLATGPLTPSCPHRQFRAGRVLDPF 300

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            G+GT    A+   R ++GIE+ + Y  +A  R+ +
Sbjct: 301 MGAGTVALAAETYGRDWVGIELNEAYAALAEARLTA 336


>gi|167589701|ref|ZP_02382089.1| DNA methylase N-4/N-6 domain protein [Burkholderia ubonensis Bu]
          Length = 294

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 92/288 (31%), Gaps = 34/288 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNL----QLNGQLYRPDHSLVDAVTDSWDK--- 74
           ++ + +    L     +SV  +  DPPY L           R     +  +  S+D    
Sbjct: 7   RLFQEDCFEWLASQKPQSVHAVVTDPPYGLVEYTAKETGKLRAGKGGIWRIPPSFDGHQR 66

Query: 75  ----------FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
                      +  +A  AF + +     +VL P   + +  +      +   +      
Sbjct: 67  APLPRFTVLTETDRQALHAFFKRFGTLIAKVLVPGANIVIASNPLLSHIVAEAMGQAGLE 126

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAH--------ETLIWASPS-----PKAKGYTFNYDAL 171
           +   I  +    M    G R +NAH               P      P       N    
Sbjct: 127 LRGYIARQV---MTMRGGDRPKNAHVEFDSVSVMPRSQWEPWVVLRAPLDGRVQDNLRRW 183

Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK-PGDIILDP 230
                           +        ++     HP+ KP+A + +I+ +       ++LDP
Sbjct: 184 GTGGFRRPSSERPFGDLIKSHPTPASEKKIAPHPSLKPQAFMRQIVRAVLPLGQGVVLDP 243

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278
           F G+G++ A A  +     G+E+  ++  +AT  +  +  L   +  +
Sbjct: 244 FMGAGSTLAAANAIGYESCGVEVDSEFFALATNAVPQLAALPAKDRQI 291


>gi|217980181|ref|YP_002364231.1| DNA methylase N-4/N-6 domain protein [Thauera sp. MZ1T]
 gi|217508352|gb|ACK55137.1| DNA methylase N-4/N-6 domain protein [Thauera sp. MZ1T]
          Length = 305

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/289 (19%), Positives = 98/289 (33%), Gaps = 63/289 (21%)

Query: 23  IIKGNSISVLEKLPAKSV--DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           I   +    +  L    V  + +   PP+  Q +                        + 
Sbjct: 36  IFNMDVREAMAHLTKAGVIVNCMVTSPPFYGQRDY-----------GAKGQIGLEEHPQQ 84

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNI----------------------------- 111
           +     A   A + VL  NG+LWV                                    
Sbjct: 85  FIEQLVACFEAAKPVLADNGSLWVNLGDTYWSGKGEHKSGESKQSARRFGLRPQDRTGDG 144

Query: 112 ------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
                        R    +Q+ ++ + ND VW K NP+P+    R   +HE +       
Sbjct: 145 QLCKPKQLLLIPHRFAIAMQDKDWIVRNDNVWLKPNPIPDQVRDRCSMSHEYMFHLVK-- 202

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVS 219
            ++ Y FN D +   +E        ++P     E    +    +H  +  E L+   ++S
Sbjct: 203 -SRWYFFNKDLVGRKSETGS-----ILPPPDTWEIPPARRS-HMHKARFSEELVRIPILS 255

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +T    ++LDPF GSGTS   A+K     IGI++K+D+     + I  +
Sbjct: 256 TTPQSGVVLDPFGGSGTSLVFARKHGFRAIGIDIKKDFCQSMVEHIGEL 304


>gi|284005615|ref|YP_003391435.1| DNA methylase N-4/N-6 domain protein [Spirosoma linguale DSM 74]
 gi|283820799|gb|ADB42636.1| DNA methylase N-4/N-6 domain protein [Spirosoma linguale DSM 74]
          Length = 644

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 61/268 (22%), Positives = 106/268 (39%), Gaps = 15/268 (5%)

Query: 103 WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
           ++  +Y      G   Q ++                         A+          + K
Sbjct: 230 YIKQNYRMKDEDGRAFQTVDLTARKPGGDTSYEWKGYTLSSGRYWAYSKANMEKFEQEGK 289

Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSST 221
            Y  +    +      +M    L  + +  + L +  GE++ +PTQKPE LL RI+  S+
Sbjct: 290 IYYTSSGLPRLKYYLDEMPGVSLQDMWTDVKLLSSHSGERVDYPTQKPETLLERIIQVSS 349

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN---IELTV 278
            PGD++ D F GSGT+ +VA KL R FIG ++    I   TKR+  +    N    + TV
Sbjct: 350 NPGDLVFDCFMGSGTTQSVAMKLGRRFIGADINLGAIQTTTKRLIKIANELNGKVNDGTV 409

Query: 279 LTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISA------TVCADGTLISGTELGSIH 332
            TG +      ++  V R  ++  ++L  A     A          DG LI   ++  ++
Sbjct: 410 YTGFQVYNVNHYD--VFRNPLEAKELLMKALEVEPAPGGGLFDGEKDGRLI---KVMPVN 464

Query: 333 RVGAKVSGSETCNGWNFWYFEKLGELHS 360
           R+  +   +E  +  +   +EK      
Sbjct: 465 RIATRADLNELLSNIDLRAYEKKKSEAP 492



 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 80/177 (45%), Gaps = 16/177 (9%)

Query: 19  WKDKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLNGQLY---RPDHSLVDAVTDSW 72
           W ++I  G+++ V+  L  K    VDLI+ DPP++ + + +     R    + DA +   
Sbjct: 62  WMNQIFWGDNLQVMSHLLKKFRGQVDLIYIDPPFDSKADYKKKIQLRGKDIMNDATSFEE 121

Query: 73  DKFSSF---EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILN 127
            +++     + Y  F    L+  + +L   G+++V   YH    I ++L  +      LN
Sbjct: 122 KQYTDIWTNDEYLQFMYERLIILKELLSEKGSIYVHCDYHKSHYIRSLLDEIFGQNNFLN 181

Query: 128 DIVWRKSNPMPNFR--GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
           +IVW+++    + +   + F   H+ + +      +  Y +N   +  +++ ++   
Sbjct: 182 EIVWKRTAAHSDAKQGAKFFGRQHDIIFYYCK---SLNYIWNQQYIPYSDDYIKQNY 235


>gi|304389846|ref|ZP_07371805.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304327022|gb|EFL94261.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 368

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 55/334 (16%), Positives = 102/334 (30%), Gaps = 80/334 (23%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA-- 80
           +I+G++  VLEK P  SV LI  DPPY+      +        D    +W +  + +   
Sbjct: 35  VIQGDAAEVLEKFPDDSVSLILTDPPYHSTKKANIANDRAFREDEDFLAWMETFAVQWKR 94

Query: 81  -------------------------------------------YDAF--------TRAWL 89
                                                      YD +         R+W 
Sbjct: 95  ILRPSGTVYVFCSSAMSARLEIMFSKYFRPIGHITWSKPNDPGYDGWKGKMKKEALRSWY 154

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL------------------NFWILNDIVW 131
               R+L      +     +    +G  LQ+                           V 
Sbjct: 155 PHSERILMFEHGQYGSWEAYRRSPLGQFLQDKRKQAGLTMKALTEEVGAYGKVNHGGAVA 214

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
                       +++     +I      +   Y  +       + DV     W  P    
Sbjct: 215 NWEAGRNIPSHDQYEKICAAIIATGKVAEMPKYE-DVVRPMFLSNDVNFIDVWDFPSV-- 271

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
                 +     HP +KP ALL  ++ +S+   D++LD F GSG++   A  L R  I +
Sbjct: 272 ------RPFRGKHPAEKPSALLEHMIKASSYEDDVVLDCFAGSGSTAVAAVGLGRKAIVV 325

Query: 252 EMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           E+++ +++   K +  +        + +  + +E
Sbjct: 326 ELEEKWVERTIKDLEFIAQEEPSFKSSVASRESE 359


>gi|115375277|ref|ZP_01462542.1| DNA methylase [Stigmatella aurantiaca DW4/3-1]
 gi|310820222|ref|YP_003952580.1| modification methylase [Stigmatella aurantiaca DW4/3-1]
 gi|115367744|gb|EAU66714.1| DNA methylase [Stigmatella aurantiaca DW4/3-1]
 gi|309393294|gb|ADO70753.1| Modification methylase [Stigmatella aurantiaca DW4/3-1]
          Length = 254

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/253 (20%), Positives = 94/253 (37%), Gaps = 20/253 (7%)

Query: 22  KIIKGNSIS---VLEKLPAKSVDLIFADPPYNL---QLNGQLYRPDHSLVDAVTDSWDKF 75
           +  + ++      L  L      L+  DPPY L   +  G   R   +      +   +F
Sbjct: 11  RCHRADAREPGGYLSALGDSRAHLLLTDPPYCLLTRRRKGGDERDPRAHKKIDRNPIVRF 70

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            + + Y  FT AW+      L P   L +  +      I T+ + L +  L         
Sbjct: 71  ETVKDYRVFTEAWMTRAVSWLTPEARLVIWTNLLGKEPITTVARQLGYTHLLGEYVWGKR 130

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
                   +    +E  +  S +P                   +  + W   +  G +  
Sbjct: 131 TTDKNANEQLLRVYEVALVFSRTP------------LPPLGPGEAPTVW--AVVGGYDDD 176

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                   HP  KP ++L  ++ + ++PG+ ILDPF GSG++ A A +L R    +E++ 
Sbjct: 177 AEAQQWGNHPHHKPFSVLEPLVRTYSRPGETILDPFAGSGSTPAAALRLERRPACMEIEP 236

Query: 256 DYIDIATKRIASV 268
           ++ +  T R+  V
Sbjct: 237 EWAERVTHRLRGV 249


>gi|71274670|ref|ZP_00650958.1| DNA methylase N-4/N-6 [Xylella fastidiosa Dixon]
 gi|71901601|ref|ZP_00683682.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
 gi|170730091|ref|YP_001775524.1| site-specific DNA-methyltransferase [Xylella fastidiosa M12]
 gi|71164402|gb|EAO14116.1| DNA methylase N-4/N-6 [Xylella fastidiosa Dixon]
 gi|71728649|gb|EAO30799.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
 gi|167964884|gb|ACA11894.1| site-specific DNA-methyltransferase [Xylella fastidiosa M12]
          Length = 173

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 69/174 (39%), Gaps = 22/174 (12%)

Query: 94  RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           RV +P G L V   +  +  +   +Q+   W    IV     P    +  RF++  E ++
Sbjct: 20  RVTRPGGVLLVFTDWRMLPTLTDAVQSAG-WAWQGIVVWDKTPACRPQLGRFRSQAEFIV 78

Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL 213
           WAS          N  A                    G         EK H   KP AL+
Sbjct: 79  WASCGLM------NPKAHPV--------------TPVGVFATGTAPREKRHQVGKPLALM 118

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
             ++     P   +LDPF GSGT+G  A +    FIG+E+   Y D+A +R+A 
Sbjct: 119 EHLIKI-VPPTSTVLDPFAGSGTTGVAALRAGHQFIGMEISPWYCDVAKQRLAD 171


>gi|315612387|ref|ZP_07887300.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sanguinis ATCC
           49296]
 gi|315315368|gb|EFU63407.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sanguinis ATCC
           49296]
          Length = 224

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 96/252 (38%), Gaps = 36/252 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K + G+ + ++++ P    DL   DPPY      + +         V+  + + S    +
Sbjct: 3   KFLNGDCMDIMKQYPDDYFDLAIVDPPYFSGPEKRKFYGRKISPIGVSRLYGETS---EW 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
               + +     RV K    +W +  +   F                IVW K N   +F 
Sbjct: 60  QIPNKDYFDELFRVSKNQ-IIWGVNYFDYSF------------GPGRIVWDKVNGQSSF- 105

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK--D 199
                 +   + + S     + + + ++ +                I  G  +  NK  +
Sbjct: 106 ------SDCEIAYCSLHDSTRLFRYMWNGMMQGK-----------SISEGHIQQGNKALN 148

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
             ++HPTQKP  L   +L +  K GD ILD   GS +S    ++L   ++G E+  D  +
Sbjct: 149 EVRIHPTQKPANLYLWLLRNYAKEGDKILDTHVGSASSLIACQELGFEYVGCELDGDIFN 208

Query: 260 IATKRIASVQPL 271
           IA +R+ + +  
Sbjct: 209 IAKQRLDAYEKQ 220


>gi|209963408|ref|YP_002296323.1| DNA methylase, putative [Rhodospirillum centenum SW]
 gi|209956874|gb|ACI97510.1| DNA methylase, putative [Rhodospirillum centenum SW]
          Length = 461

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 90/278 (32%), Gaps = 40/278 (14%)

Query: 20  KDKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G+S     V + L   S  L F  PPY  Q +                 WD   
Sbjct: 170 QHRLLCGDSTDPAAVAQVLGGDSAALCFTSPPYGQQRDYTTGGIAR---------WDSLM 220

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY-HNIFRIGTMLQNLNFWILNDIVWRKSN 135
                  F    +    +VL   G +   G +          ++   +      VW +  
Sbjct: 221 Q----RVFALLPMAPEGQVLVNLGLIHRDGEWLPYWSDWLDWMRTQGWRRFGLYVWDQGP 276

Query: 136 PMPNFRGRRFQNAHETLIWA-------SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
            +P   G R   + E +          +     K    +       +     ++D  +  
Sbjct: 277 GLPGDWGGRLAPSFEFVFHFNRQGRKPNKIVPCKYAGLDTHLRADGHSTAMRKADGTVGA 336

Query: 189 CSGS----------------ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
            + +                 R + +  E  HP   P AL   IL +    GD++ +PF 
Sbjct: 337 WTHAGQPTQTHRIPDSVIRIGRHKARGIEVEHPAVFPVALPELILNAYADAGDVVYEPFS 396

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
           GSGT+    ++  R    +++   Y+D+A +R     P
Sbjct: 397 GSGTTLIAGERTGRRVCAVDLAPAYVDVAVRRWNEQFP 434


>gi|29566484|ref|NP_818050.1| gp77 [Mycobacterium phage Che9d]
 gi|29425209|gb|AAN07995.1| gp77 [Mycobacterium phage Che9d]
          Length = 217

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 85/250 (34%), Gaps = 54/250 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            +  G+ + + E L     D++  DPPY +       +    + +      D+ ++    
Sbjct: 11  TLYHGDCLEITEWLA---ADVLVTDPPYGMAFVSSWTKQKRPVAN------DENTTHR-- 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D   + W      V KP     V G++                 +  ++           
Sbjct: 60  DNALQEW-----GVEKPAA---VFGTWRV----------AKPANVRQVLIWDKRGAGPGM 101

Query: 142 GRRFQ---NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           G        +HE +                            RS     + +      + 
Sbjct: 102 GDLTTAFGTSHEEIYLI--------------------GHWAKRSTRRGSVITTESSPSDL 141

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                HPT KP  L+  I+ ++  P  ++ DPF GSG++   A+ L R  IG+E+++ Y 
Sbjct: 142 TSRIGHPTPKPIGLMETIIAAA--PDGVVADPFAGSGSTLVAARNLGRKAIGVELEEKYC 199

Query: 259 DIATKRIASV 268
           ++  KR+  +
Sbjct: 200 ELIAKRLDQM 209


>gi|153810297|ref|ZP_01962965.1| hypothetical protein RUMOBE_00678 [Ruminococcus obeum ATCC 29174]
 gi|149833476|gb|EDM88557.1| hypothetical protein RUMOBE_00678 [Ruminococcus obeum ATCC 29174]
          Length = 658

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 74/416 (17%), Positives = 142/416 (34%), Gaps = 107/416 (25%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKS--VDLIFADPPYNLQLNGQLY 58
           M +K ++  N +        + +I+G  +S    L  +S  VDL++ DPP+    +    
Sbjct: 47  MEKKETVGENSDG-------NMVIRGECVSACAYLKEQSIQVDLVYIDPPFASGADYAKK 99

Query: 59  ---RPDHSLVDA--------------------VTDSWDKFSSFEAYDAFTRAWLLACRRV 95
              R +  + +                       D WDK    E Y ++    L+A + V
Sbjct: 100 VYIRRNPKVAEVIARAEQELDVDELRAFEEKMYGDIWDK----EKYLSWMYENLMAIKSV 155

Query: 96  LKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPN--FRGR-------R 144
           +  + +++V   YH    +  +L  +       N+I+W+++    +  F G         
Sbjct: 156 MSESASIYVHLDYHIGHYVKILLDEIFGEDNFRNEIIWKRATAHSDAEFYGNNFDCIYFY 215

Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ--------------------MRSDW 184
            ++  E +      P  + Y   +                                RS W
Sbjct: 216 TKSQTEYVFNTVYQPYDESYIARFSRTDPDGRKWDSGNLTAKGLQGGGYDYEYKGYRSLW 275

Query: 185 LIPICSG-------------------------------------SERLRNKDGEKL-HPT 206
            +P+ +                                         + ++  EK+ + T
Sbjct: 276 RMPLETMERMDREGRIHITKNGGIRSKVYLDELPGMPAQSMWLDVNPINSQANEKVDYAT 335

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           QKPEAL+ RI+ +S+   DI+ D F GSG + AV+ KL R FI  ++  + I     R+ 
Sbjct: 336 QKPEALIERIISASSNENDIVADFFAGSGVTAAVSHKLNRKFITSDIGLNSIQTTRDRL- 394

Query: 267 SVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
            V      ++  +       R     + +   + PG    ++  +      +D  L
Sbjct: 395 -VSDGSEFDVLEIKDGVQLYRNPVQTMDKIKSLIPGLKNEDSLDSFWEGAISDSKL 449


>gi|157952314|ref|YP_001497206.1| hypothetical protein NY2A_B010R [Paramecium bursaria Chlorella
           virus NY2A]
 gi|155122541|gb|ABT14409.1| hypothetical protein NY2A_B010R [Paramecium bursaria Chlorella
           virus NY2A]
          Length = 303

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 55/303 (18%), Positives = 99/303 (32%), Gaps = 74/303 (24%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK-FSSFEAYD 82
           +  +++  +     +SVDL   DPPY                  V +SWD  + +FE Y 
Sbjct: 3   VNEDNVKFMNTFEDESVDLFILDPPY---------------YKVVKESWDNVWKTFEEYQ 47

Query: 83  AFTRA---------------WLLACRRVLKPNGTLWVIGS--YHNIFRIGTMLQNL---- 121
            +                  WL      L    ++       Y     +   +Q++    
Sbjct: 48  EWFDNLMGTISKKAKKSCSLWLFGFPYQLTKLISIMEHHGFAYRQQIIVFKGMQSVAGRV 107

Query: 122 ----------------NFWILNDIVWRKSNPMPNFRGRRFQ--NAH-----------ETL 152
                            +    DIV +  N      G+  +  N H             +
Sbjct: 108 SSKLKMFPTATESIFFFYKDSRDIVKKLLNERKIVSGKTCKEINDHLGKASNGGGTWSGI 167

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI--------CSGSERLRNKDGEKLH 204
                         +++ L      +    D++                   N+  +K+H
Sbjct: 168 AGLKKKDTQYPTKEDWEKLDELIGPIGKYGDYVYKFNVKFGLTDVWSDINFYNRSVQKIH 227

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PTQKP  L+ R++ SS+   D++ DPF GSG +  V +K+ R     E+ ++Y + A   
Sbjct: 228 PTQKPIELIQRLIESSSNENDVVCDPFGGSGVTWYVCQKMNRKCFSCELSKEYYEKALDA 287

Query: 265 IAS 267
           I+ 
Sbjct: 288 ISK 290


>gi|226324847|ref|ZP_03800365.1| hypothetical protein COPCOM_02634 [Coprococcus comes ATCC 27758]
 gi|225207295|gb|EEG89649.1| hypothetical protein COPCOM_02634 [Coprococcus comes ATCC 27758]
          Length = 287

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 58/266 (21%), Positives = 106/266 (39%), Gaps = 26/266 (9%)

Query: 39  SVDLIFADPPYNLQLN----------GQLYRPDHSLV--DAVTDSWDKFSSFEAYDAFTR 86
              LI AD PYN+  N          G+  +   S +  +A  +S   F+ +E +   ++
Sbjct: 26  KAQLIIADVPYNVGRNFYGSNPMWYVGRDNKNGKSKLAEEAAFNSDFNFNLYEYFHFCSK 85

Query: 87  AWLLACRRVLKPNGT-----LWVIGSYHNIFRIGTMLQNLNF-WILNDIVWRKSNPMPNF 140
                 ++  K   +     + V  S+  +  +    +   F   +  +  +  +P    
Sbjct: 86  MLKKEPKKAGKCGRSSDAPCMIVFCSFEQLSTLINAAKKHGFVNYIPLVFVKNYSPQVLK 145

Query: 141 RGRRFQNAHET--LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
              R   A E   +++    PK +      +  K       M  +W             K
Sbjct: 146 ANMRIVGATEYALVLYRDKLPKFRNGAQFDENGKTIRGTGHMVFNWF------KWEKDGK 199

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           D  K+HPTQKP  LL +++ + T PGD+++DP  GSG++   A+ L RS  G E+ +++ 
Sbjct: 200 DIPKIHPTQKPVRLLEQLIQTFTDPGDVVIDPCCGSGSTLRAARNLGRSAFGFEIDRNFY 259

Query: 259 DIATKRIASVQPLGNIELTVLTGKRT 284
             A   +  V+    + +T   G  T
Sbjct: 260 ARAKNEMLKVEKEQQMNITDFIGGNT 285


>gi|323139912|ref|ZP_08074936.1| DNA methylase N-4/N-6 domain protein [Methylocystis sp. ATCC 49242]
 gi|322394829|gb|EFX97406.1| DNA methylase N-4/N-6 domain protein [Methylocystis sp. ATCC 49242]
          Length = 237

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 75/192 (39%), Gaps = 9/192 (4%)

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            S   +  F   +L      L P   L +   + +   +    ++ +  +L   VW K +
Sbjct: 1   MSEAEFTKFLTEFLQTTSASLVPGAVLSIFMDWRHQREVLNAARSTSLTLLCVCVWNKGS 60

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
                 G  +++ HE +                + ++         + W  P  +G  R 
Sbjct: 61  GG---MGSLYRSQHELVFVLKKGGAPHK-----NRVQLGRHGRCRTNVWNYPGLAGFGRD 112

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           R +     HPT K  A+++  +   +  GD+++DPF GSGT+   A K  R    IE++ 
Sbjct: 113 RQQQ-LADHPTVKNCAMIADAIRDVSDRGDLVIDPFSGSGTTIIGAAKTGRRACAIELEP 171

Query: 256 DYIDIATKRIAS 267
            Y D+A +R   
Sbjct: 172 KYTDVAIRRWEK 183


>gi|54026003|ref|YP_120245.1| putative DNA methyltransferase [Nocardia farcinica IFM 10152]
 gi|54017511|dbj|BAD58881.1| putative DNA methyltransferase [Nocardia farcinica IFM 10152]
          Length = 221

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 53/252 (21%), Positives = 92/252 (36%), Gaps = 55/252 (21%)

Query: 22  KIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
            +  G+ +     L      + D++  DPPY +   G          D  T   D+    
Sbjct: 12  TLYHGSCLDNDDWL------TADILVTDPPYGMSYTGHGGHKTLIAGDDTTTIRDQ---- 61

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
               A TR W         P+    V G++          +  N  ++  +VW K++   
Sbjct: 62  ----ALTR-WFD-----HNPDNPALVFGTWRVP-------RPPNPKLV--LVWDKTDGTG 102

Query: 139 NFRGRR---FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
              G     F ++HE +      P                     R   ++    G   L
Sbjct: 103 PGMGDLTCAFGSSHEEIYLWGKWP----------------RGQHRRMGSVLRTAVGMSSL 146

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
             K G   HPT KP  L+  ++   + P  +I DPF GSG++   A+ L R  +G+E+++
Sbjct: 147 SRKIG---HPTPKPIGLMETLIER-SIPDGVIADPFAGSGSTLVAAQNLGRRAVGVELEE 202

Query: 256 DYIDIATKRIAS 267
            Y ++  +R+  
Sbjct: 203 RYCELIARRLDQ 214


>gi|254414217|ref|ZP_05027984.1| DNA methylase [Microcoleus chthonoplastes PCC 7420]
 gi|196178892|gb|EDX73889.1| DNA methylase [Microcoleus chthonoplastes PCC 7420]
          Length = 326

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 58/296 (19%), Positives = 106/296 (35%), Gaps = 39/296 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNL------------QLNGQLYRPDHSLVDAVTD 70
           I+  +    L ++P  S+  +  DPPY +               G ++R   S       
Sbjct: 18  ILYADCFDWLAQIPENSIHGVVTDPPYGVKEYDIEQIKKRSNGKGGIWRIPPSYDGHQRS 77

Query: 71  SWDKFSSFEAYDA-----FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
              +F++    +      F   W     RVL+P G ++V  +      + + L       
Sbjct: 78  PLPRFTALTQKERTTLKCFFIEWSKLVVRVLRPGGHVFVASNAFLSQLVFSALVEGGLEF 137

Query: 126 LNDIVWRKSNPMPNFRGRRFQNA--------------HETL-IWASPSPKAKGYTFNYDA 170
             +++           G R +NA              +E   I   P P     +     
Sbjct: 138 RGELIRLVRTLRG---GDRPKNAEQEFPHVSSMPRGCYEPWGILRKPIPSGMKVSDCLRE 194

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL-D 229
            +          +    +       R +     HP+ KP++ L +++ +    G+ IL D
Sbjct: 195 FQTGGLRRTPDGNPFNDVIFSERTPRQEREIANHPSLKPQSFLRQLVHAVLPLGEGILID 254

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           PF GSG++ A A+ +    IGIE   +Y  ++  RIA +  L  + ++    K TE
Sbjct: 255 PFMGSGSTVAAAEAVGVCCIGIERYTEYYQMS--RIA-IPQLAALNVSPHLQKSTE 307


>gi|240124888|ref|ZP_04737774.1| putative modification methylase [Neisseria gonorrhoeae SK-92-679]
          Length = 125

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 52/125 (41%), Positives = 72/125 (57%), Gaps = 1/125 (0%)

Query: 29  ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
             +LEK P    D+IFADPPY L  +G     +  +V     +WDK     A   F   W
Sbjct: 2   RKILEKHPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGMAADLEFYEEW 60

Query: 89  LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
           L  C  +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP PN   R F ++
Sbjct: 61  LRLCYALLKPNGTIWVCGTFHNIYLIGYLMQTVGYHILNNITWEKPNPPPNLSCRFFTHS 120

Query: 149 HETLI 153
            ET++
Sbjct: 121 TETIL 125


>gi|307564728|ref|ZP_07627256.1| DNA (cytosine-5-)-methyltransferase [Prevotella amnii CRIS 21A-A]
 gi|307346450|gb|EFN91759.1| DNA (cytosine-5-)-methyltransferase [Prevotella amnii CRIS 21A-A]
          Length = 338

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 67/326 (20%), Positives = 109/326 (33%), Gaps = 80/326 (24%)

Query: 20  KDKIIKGNSISVLEKLPAK----SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           K+ +IKGN+I  L+ L  K     +DLI+ DPP+     G         V  ++ S D  
Sbjct: 2   KNLLIKGNNIDGLQLLLDKGYKGKIDLIYIDPPFATG--GTFSIDSGGRVATISKSNDAN 59

Query: 76  SSFEA------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML----------- 118
            ++        Y  + R  +     +L   G+ ++   Y     I  ML           
Sbjct: 60  IAYTDTLKGRNYLTYIRKRIELLYLLLSDKGSFYLHIDYKIGHYIKVMLDSIFGIENFRN 119

Query: 119 ------------QNLNFWILNDIVWRKSNP-MPNFRGRRFQNAHETLIWASPSPKAKGYT 165
                       Q + +  + D++   +    P +    F+ + + +I       A G  
Sbjct: 120 DITRIKCNPKNFQKIGYGNIKDMILFYTKGDNPIWNNPIFEYSEDEIIKRYNKIDANGRR 179

Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL---------------------- 203
           +    L A  E     S     I     R      E+L                      
Sbjct: 180 YTTVPLHAPGETKGKTSLPFKGIYPPKGRHWRTSIEELEQLDKKGLIEWSSNGNPRKINY 239

Query: 204 ----------------------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                                 +PTQK E LL  I+ +S+    I+LD F GSGT+   A
Sbjct: 240 ADDRIGKKAQDIWDFKDPQYPIYPTQKNEDLLHFIIKASSSINSIVLDCFAGSGTTLKAA 299

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIAS 267
            +L R +IGI+  +  I    + + S
Sbjct: 300 NRLGRKWIGIDQSELAIKTIKENLRS 325


>gi|328545737|ref|YP_004305846.1| ParB domain protein nuclease [polymorphum gilvum SL003B-26A1]
 gi|326415477|gb|ADZ72540.1| ParB domain protein nuclease [Polymorphum gilvum SL003B-26A1]
          Length = 439

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 91/282 (32%), Gaps = 30/282 (10%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA-VTDSWDKFS 76
            +++ G+S     V   +  +   L   DPPY +  +G  +   +    A    +WD  S
Sbjct: 179 HRLLCGDSTSASDVRRLMNGERAILFATDPPYLVDYDGSNHPTRNKDWSASYGTTWDDSS 238

Query: 77  -SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
              E YD F  A +             +   +      +    +    ++   I+W K  
Sbjct: 239 QGAELYDGFIAAAVAEAIAEDA---AWYCWHASRRQAMLEACWEKAGAFVHQQIIWVKDR 295

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            +       +   HE        P                 +  + S W +P  +  ER 
Sbjct: 296 GV--LTRSHYLWKHEPCFMGWRRPN----------RPPKVAEQTLPSTWEMPSFAKDERP 343

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                   HPT KP       +      G +  +PF GSG+     +   R    +E+  
Sbjct: 344 D-------HPTPKPLDAFGIPMRQHVARGGLCYEPFSGSGSQIMAGEANGRRVFAMEISP 396

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERG 297
            Y+D+A +R  +      I   + +  RT   V    L E+ 
Sbjct: 397 AYVDVAVERWQAETGKDAI---LDSDGRTFAEVKAERLGEKA 435


>gi|237740968|ref|ZP_04571449.1| modification methylase HinfI [Fusobacterium sp. 4_1_13]
 gi|229431012|gb|EEO41224.1| modification methylase HinfI [Fusobacterium sp. 4_1_13]
          Length = 90

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 43/78 (55%), Positives = 55/78 (70%)

Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
          +KI KG+SI VL+  P++SVD IFADPPY +Q  G+L R D +  + V D WDKF SF+ 
Sbjct: 10 NKIYKGDSIEVLKTFPSESVDFIFADPPYYMQTEGELLRTDGTKFNGVEDEWDKFWSFQD 69

Query: 81 YDAFTRAWLLACRRVLKP 98
          YD FT+ WL  C+RVLK 
Sbjct: 70 YDNFTKQWLGECKRVLKK 87


>gi|218960497|ref|YP_001740272.1| Modification methylase (fragment) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729154|emb|CAO80065.1| Modification methylase (fragment) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 114

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 43/81 (53%), Positives = 63/81 (77%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
            +PI  G ER++ ++G  LHPTQKPE L+  IL++S+   D+ILDPFFG+GT+G+VA +L
Sbjct: 25  EMPIVQGKERIKGENGRALHPTQKPEKLIELILLASSDENDLILDPFFGTGTTGSVASRL 84

Query: 245 RRSFIGIEMKQDYIDIATKRI 265
           +R++IGIE+ +DY +IA  RI
Sbjct: 85  KRNWIGIEINEDYCNIAHNRI 105


>gi|99034523|ref|ZP_01314503.1| hypothetical protein Wendoof_01000687 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 198

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 75/187 (40%), Gaps = 25/187 (13%)

Query: 79  EAYDAFTRAWLLACRRVLKPN-GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           E Y+ F       C  VL    G +++  S   +  +  + +         I+W K++  
Sbjct: 10  EKYELFLYDI---CSHVLAYTKGAIYICASSSELATLQKVFEEAGGRWSTFIIWAKNHFT 66

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                   Q  +ET+++   +   + +                   W     +       
Sbjct: 67  LGRSDY--QRQYETILYGWKNGNKREWH----------GGRNQSDLWFYDKPT------- 107

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
                LHPT KP  L+ R +V+S++PGDI+LDPF GSG++    ++  R    IE+   +
Sbjct: 108 --YNSLHPTMKPVELMERAIVNSSRPGDIVLDPFSGSGSTLIACERTGRICRTIELDPTF 165

Query: 258 IDIATKR 264
           +D+  KR
Sbjct: 166 VDVTIKR 172


>gi|241889780|ref|ZP_04777078.1| DNA methylase [Gemella haemolysans ATCC 10379]
 gi|241863402|gb|EER67786.1| DNA methylase [Gemella haemolysans ATCC 10379]
          Length = 178

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 14/180 (7%)

Query: 88  WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
                 R+LK   ++ V  S      +  +     F+     +W K+NPMP      F N
Sbjct: 8   VFKESSRILKNGASMIVFMSILRGETLVEIANKFGFYYKTTGIWHKTNPMPRNMNLHFVN 67

Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
           ++E  I+ +   K K  TFN             +   ++     S     +     HPTQ
Sbjct: 68  SNECWIYFT--YKTKTRTFN------------NKGKLVLDYIETSVTTAREKKLGKHPTQ 113

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           KP  L    +   +  GD+++DPF GSG+S   + +L R+FIG+E+++ Y  +   R+  
Sbjct: 114 KPIILFEHFIRLLSNKGDLVVDPFLGSGSSAIASYRLNRNFIGVELEEKYAKLVNMRVED 173


>gi|127421|sp|P18051|MTB2_BACAM RecName: Full=Modification methylase BamHII; Short=M.BamHII;
           AltName: Full=N(4)-cytosine-specific methyltransferase
           BamHII
 gi|39314|emb|CAA37205.1| unnamed protein product [Bacillus amyloliquefaciens]
          Length = 265

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 90/268 (33%), Gaps = 58/268 (21%)

Query: 33  EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLAC 92
           E +   ++DL    PPY                       D   ++  Y           
Sbjct: 3   ENIGDCTIDLTVTSPPY-----------------------DDLRNYNGYSFNFEETAQEL 39

Query: 93  RRVLKPNGTLWVIGSYHNI--------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
            RV K  G +  +              FR     + L F + + +++ K +     + R 
Sbjct: 40  YRVTKEGGVVVWVVGDKTHKGSETGSSFRQALYFKELGFNLHDTMIYEKDSISFPDKNRY 99

Query: 145 FQNAHETLIWAS--------------PSPKAKGYTFNYDALKAANEDVQMRSD------- 183
           +Q      I++                    K +   +       +    + +       
Sbjct: 100 YQIFEYMFIFSKGKPKTINLLADRKNKWYNGKKHIKGHYRKMDGEKVRHHKQNLLKEFGV 159

Query: 184 ----WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
               W IP  +G ++         HP   PE L    ++S +  GDI+ DPF GSGT+  
Sbjct: 160 RFNIWRIP--NGHQKSTLDKIAFQHPAIFPEKLAEDHILSWSNEGDIVFDPFMGSGTTAK 217

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           +A    R +IG E+ ++Y DIA +R+ +
Sbjct: 218 MAALNNRKYIGTEISKEYCDIANERLKN 245


>gi|300775660|ref|ZP_07085521.1| DNA (cytosine-5-)-methyltransferase [Chryseobacterium gleum ATCC
           35910]
 gi|300505687|gb|EFK36824.1| DNA (cytosine-5-)-methyltransferase [Chryseobacterium gleum ATCC
           35910]
          Length = 297

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 59/314 (18%), Positives = 101/314 (32%), Gaps = 85/314 (27%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + K+   +++ ++++LP +S+D+I  DPPY    N +L RP                 F+
Sbjct: 3   RIKLFNEDNLELMKRLPDESIDVICIDPPYLYLKNQKLERP-----------------FD 45

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            +      +   CRR+L  NG + + G   + +R  T+L  L F    +I+W KS    +
Sbjct: 46  EH-----KFFSECRRLLTKNGFIVMFGRGESFYRWNTILSELKFSFKEEIIWNKSYTTSS 100

Query: 140 FRGRRFQNAHETLIWASP------------------------------------------ 157
                    HET++                                              
Sbjct: 101 MHA--ISRCHETVVIFGKDAGINNVRVPYLEVKQENISSIIQDIKRIKSALNNTKELEAL 158

Query: 158 ----------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
                       + K   FN      + E  +        +    E+         + T 
Sbjct: 159 ELFMTKRMIEFGEDKKRGFNTTIQGVSKEQCRSVKTMQSVVYGMKEKSIINVKRNHYGTI 218

Query: 208 KPEA----LLSRILVSSTKPGD-----IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            P      LL R+L             I+ D F GS +       +    I  E+ Q+Y 
Sbjct: 219 HPTEKPVRLLERLLALVIPESKPREEIIVADFFGGSMSCMEAVHNMGMKGIACEIDQEYF 278

Query: 259 DIATKRIASVQPLG 272
           +   +RI  +QPL 
Sbjct: 279 EKGKERIEKLQPLQ 292


>gi|317181433|dbj|BAJ59217.1| Type II restriction enzyme M protein [Helicobacter pylori F57]
          Length = 139

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 50/129 (38%), Positives = 70/129 (54%), Gaps = 5/129 (3%)

Query: 15  SIFEWKDKI---IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
            IF+ +D++    +G+   VL +      DLIFADPPY L  +G L      +V      
Sbjct: 9   PIFKSQDQLFTLYQGDCNEVLPQFE-NQFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGD 66

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           WDK  S    D F   W+   ++ LK  G+L + G+YHNIF +G +LQ L+F ILN I W
Sbjct: 67  WDKEESVNDIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKILNLITW 126

Query: 132 RKSNPMPNF 140
           +K+NP P  
Sbjct: 127 QKTNPRPIL 135


>gi|213419982|ref|ZP_03353048.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 149

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 5/120 (4%)

Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
           +  +  +  N+     + W  P           D  + HPTQKP ALL RI+++S+ P D
Sbjct: 17  YRKNPPQPYNQKKVPGNVWSFPRV-----RYLMDEYENHPTQKPSALLKRIILASSNPSD 71

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
            +LDPF GS T+GAVA    R FIGIE+  +Y+ +  +R++        EL  +  ++T+
Sbjct: 72  TVLDPFAGSFTTGAVAAASGRKFIGIELNNEYVKMGLRRLSVTSHYSENELAKVKKRKTQ 131


>gi|58425934|gb|AAW74971.1| site-specific DNA-methyltransferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 162

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 67/173 (38%), Gaps = 22/173 (12%)

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
            + WL  C R+LK    + +   +  +      LQ   F      VW K+  +    G R
Sbjct: 1   MQLWLSECARLLKEGAPVLLFTDWRQLPLTTDALQAAGFKWRGVAVWDKTEGVRPQLG-R 59

Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
           F+N  E ++W S                          D   P+  G  R      +K H
Sbjct: 60  FRNQAEYIVWGSKGGM--------------------PLDRRAPVLPGVVRTPVLKADKHH 99

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
            T KP  L+ R LV   + G  ILDPF GSGT+   A+     + G+EM Q Y
Sbjct: 100 LTGKPTELM-RSLVRICEAGGRILDPFAGSGTTLVAAELEGYRWTGVEMTQHY 151


>gi|291529735|emb|CBK95321.1| DNA modification methylase [Eubacterium rectale M104/1]
          Length = 307

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 59/255 (23%), Positives = 102/255 (40%), Gaps = 23/255 (9%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +I+G+    L  L  KS+D I  D P+           D       + ++ ++  FE   
Sbjct: 65  LIEGDGRD-LSILEDKSIDCIITDHPW----------LDKKANKGGSRNFAQYDCFE--- 110

Query: 83  AFTRAWLLACRRVLKPNGTLWVI------GSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            +T A  +   RVLK    L  I       +Y  ++R+  M +   F   + + W+K   
Sbjct: 111 -YTPADFIEKARVLKQGSFLCEIIPAESATNYEYLYRLKKMAEAAGFQYYSKVPWKKGTF 169

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           + N  GR+ +N  + LI+ S  P  K        L A     +  S     + +  +  +
Sbjct: 170 VSN-TGRKAKNTEDCLIF-SLGPARKLRPDKQRGLDANGNPTRFMSGAAGMLPTEFDYQQ 227

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
               +++  ++KP  L   ++   TKP +I+LD F GSG  G  A    R  +  E   +
Sbjct: 228 VSKKDRIAQSEKPVELFETLIGYLTKPEEIVLDQFAGSGVCGEAAINTGRGCVLFEKVHE 287

Query: 257 YIDIATKRIASVQPL 271
             D    R+    P+
Sbjct: 288 LCDKICDRLGLTAPV 302


>gi|315611985|ref|ZP_07886903.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sanguinis ATCC
           49296]
 gi|315315974|gb|EFU64008.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sanguinis ATCC
           49296]
          Length = 224

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 94/252 (37%), Gaps = 36/252 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +    + + ++++ P    DL   DPPY      + Y         V   + K S    +
Sbjct: 3   EFFNNDCMDIMKQYPDDYFDLAIVDPPYFSGPEKREYYGRKVSPIGVNRLYGKTS---EW 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
               R +     RV K    +W +  +   F                IVW K N   +F 
Sbjct: 60  QIPNRDYFDELFRVSKNQ-IIWGVNYFDYSFD------------SGRIVWDKVNGHSSF- 105

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK--D 199
                 +   + + S     + + + ++ +                I  G  +  NK  +
Sbjct: 106 ------SDCEIAYCSLHDSTRLFRYMWNGMMQGK-----------SISEGHIQQGNKALN 148

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
             ++HPTQKP  L   +L +  K GD ILD   GS +S    ++L   ++G E+ ++  +
Sbjct: 149 EVRIHPTQKPVNLYLWLLRNYAKEGDKILDTHVGSASSLIACQELGFDYVGCELDKNIFN 208

Query: 260 IATKRIASVQPL 271
           +A +R+ + +  
Sbjct: 209 LAQQRLDAYEKQ 220


>gi|148658273|ref|YP_001278478.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus sp.
           RS-1]
 gi|148570383|gb|ABQ92528.1| DNA methylase N-4/N-6 domain protein [Roseiflexus sp. RS-1]
          Length = 350

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 58/298 (19%), Positives = 97/298 (32%), Gaps = 52/298 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY---------------------R 59
           D I  G++  +L ++   S+ L    PPY +    + +                     +
Sbjct: 43  DNIYCGDARQLLPQIEPNSIALSVWSPPYFVGKEYEEHLSFDEWKDLLRTVIHLHFPIIK 102

Query: 60  PDHSLVDAVTD-------------------------SWDKFSSFEAYDAFTRAWLLACRR 94
           P   LV  + D                           D   + E +  F R  L     
Sbjct: 103 PGGFLVINIADILVFKDPHMPRIQAEAVNRKRSPVTREDILRAIEQHPDFNRYQLAELLG 162

Query: 95  VLKP------NGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
             +       NG     G Y    R+  +   +  W L+   +     +         + 
Sbjct: 163 CSEQTIDRRLNGNNIRGGKYDIQTRVKIVGGLVEEWALDAGFFTYDRRIWVKDAAWENSR 222

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
             +L + S       + F    +   +       +W      G  R+ +      H  + 
Sbjct: 223 WASLSYRSVDEFEYIFFFWKPGVTKFDRRRLSSDEWRDWGSRGVWRIPSVRSNDDHEAKF 282

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           P  L SR +   T PGDI+LD F GSGT+   A +  R +IGI++ Q Y+D+A   I 
Sbjct: 283 PVELPSRAIKLLTDPGDIVLDCFIGSGTTAIAAIRAGRRYIGIDILQKYVDLARNNIR 340


>gi|237751142|ref|ZP_04581622.1| adenine-specific DNA methylase [Helicobacter bilis ATCC 43879]
 gi|229373587|gb|EEO23978.1| adenine-specific DNA methylase [Helicobacter bilis ATCC 43879]
          Length = 221

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 96/235 (40%), Gaps = 27/235 (11%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +  +  + + ++  L + SVDL F DP Y   L+   Y  +            + +  + 
Sbjct: 10  NTRLNIDGLELMGSLESCSVDLCFFDPQYRGVLDKMRYGNEGKRQKG------RSTLVQM 63

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGS-YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            +   ++++    RVLKP+  L +    +H    +   ++  +  +++ I W K   +  
Sbjct: 64  SEEQIQSFICEIDRVLKPSCYLMLWIDKFHLCEGVKAWVEQTSLQVVDLITWDK---LKM 120

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
             G R +   E L+    +P     T+             +R  W   I +        D
Sbjct: 121 GMGYRTRRQSEYLLVLQKAPVRAKNTW---------RLHNIRDVWSEKIPN--------D 163

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
             K+HP  KP+ L   ++ S T  GD++LDP  GS +    A++L R FIG  + 
Sbjct: 164 ELKIHPHSKPKGLQKALIESCTNKGDLVLDPASGSFSVFECARELGREFIGTNLS 218


>gi|215484232|ref|YP_002326459.1| Modification methylase SmaI [Acinetobacter baumannii AB307-0294]
 gi|213989133|gb|ACJ59432.1| Modification methylase SmaI [Acinetobacter baumannii AB307-0294]
          Length = 348

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 66/356 (18%), Positives = 114/356 (32%), Gaps = 121/356 (33%)

Query: 20  KDKIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +KI+ G+   ++ ++  +          PPY    +             V       ++
Sbjct: 1   MNKILFGDCRDLMNQMIEEGLKAQTCVTSPPYFGLRDY-----------GVNGQLGLENT 49

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLW-VIGSYH--------------------------- 109
            + Y           R +L  +GTLW  +G  +                           
Sbjct: 50  VDEYVQNMVEVFRLVRELLHEDGTLWLNLGDSYAGSGLGMTRTGLNDGKNPKTKGLVLPK 109

Query: 110 ---------------NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
                            +++   LQ   +++  DI+W K NPMP     R   AHE +  
Sbjct: 110 QNAAQSNLKPKDLIGIPWKVAFALQADGWYLRQDIIWHKPNPMPESITDRCTKAHEYIFL 169

Query: 155 ASPSPKAKGYTFNYDALKAA-----------NEDVQMRSDWLIPICSGSER----LRNKD 199
            S    ++ Y F++ A+K             N D Q  S   +   +G  +      ++D
Sbjct: 170 FSK---SRRYFFDHVAIKEPVAESSIKRLSQNLDQQHGSTRAVMKHNGPMKAVYSRSSRD 226

Query: 200 GEKLHPTQKP-------------------EALLSRILVS--------------STKPGDI 226
             K H +++                      LL+R   S              +T P D+
Sbjct: 227 SFKRHNSKRAAVIPNQANGTHRSERLESEYDLLTRNKRSVWQVSTKPYKGAHFATFPMDL 286

Query: 227 I--------------LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           I               DPF GSGT+ AVA    R ++G E+   Y ++  +R+  V
Sbjct: 287 IEPCVLAGSRVNDVVFDPFMGSGTTAAVALMHNRQYLGCELNPQYYELQQERLEKV 342


>gi|134298735|ref|YP_001112231.1| DNA methylase N-4/N-6 domain-containing protein [Desulfotomaculum
           reducens MI-1]
 gi|134051435|gb|ABO49406.1| DNA methylase N-4/N-6 domain protein [Desulfotomaculum reducens
           MI-1]
          Length = 505

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 66/328 (20%), Positives = 109/328 (33%), Gaps = 80/328 (24%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY------------------- 58
           + II+G+++  L+ L       V  I+ DPPYN+    + Y                   
Sbjct: 38  NMIIQGDNLEALKALLPYFAGQVKCIYIDPPYNIGAAFEHYDDNLEHSQWLQLIYPRLEL 97

Query: 59  -----RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG----------TLW 103
                  D S+  ++ DS   +      + F R   +AC    K               +
Sbjct: 98  LREFLSQDGSIWVSIDDSEAAYLKVIMDEIFGRKRFIACNVWQKRYSRENREAIGDVHEY 157

Query: 104 VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-----------FQNAHETL 152
           +     N          +        V+R  N  P  R R             +  +E +
Sbjct: 158 IFTYAKNPDLFKKTRNMVPITEKQAKVYRNPNNDPLGRWRPVPMTAQEGHATPEQYYEVI 217

Query: 153 IWASP-SPKAKGYTFN---------------YDALKAANEDVQMRSDWLIPICSGSERLR 196
                     KG  +                Y      ++   +R  W +P  +      
Sbjct: 218 TPTGKVHKPPKGRCWGISKATYEDLLAKGRIYFGKTGNSQPNIIRYIWQVPGVAPWTWWP 277

Query: 197 NKD----------------GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           +++                  K   T KPE L+ RI+  +T PGD+I+D F GSGT+ AV
Sbjct: 278 SEEVGHTDEAKKEIHALFGKIKAFDTPKPERLIQRIIHIATNPGDLIMDSFLGSGTTAAV 337

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASV 268
           A K+ R +IG+EM +  +     R+  V
Sbjct: 338 AHKMGRRYIGVEMGEQAVTHVVPRLQKV 365


>gi|260583506|ref|ZP_05851254.1| DNA (cytosine-5-)-methyltransferase [Granulicatella elegans ATCC
           700633]
 gi|260158132|gb|EEW93200.1| DNA (cytosine-5-)-methyltransferase [Granulicatella elegans ATCC
           700633]
          Length = 178

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 14/180 (7%)

Query: 88  WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
                 R+LK   ++ V  S   +  +  ++    F+     +W K+NP+P      F N
Sbjct: 8   VFKELSRILKNGTSMIVFMSILRVETLVEIVNEFGFYYKTTGIWHKTNPIPRNMNLHFIN 67

Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
           ++E  I+ +   K K  TFN             +   ++     S     +     HPTQ
Sbjct: 68  SNECWIYFT--YKTKTGTFN------------NKGKLVLDYIETSVTTAREKKLGKHPTQ 113

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           KP  L    +   +  GD+++DPF GSG+S   + +L R+FIG+E+++ Y  +A  R+  
Sbjct: 114 KPIILFEHFIRLLSNEGDLVVDPFLGSGSSAIASYRLNRNFIGVELEEKYAKLANMRVED 173


>gi|227505796|ref|ZP_03935845.1| site-specific DNA-methyltransferase [Corynebacterium striatum ATCC
           6940]
 gi|227197605|gb|EEI77653.1| site-specific DNA-methyltransferase [Corynebacterium striatum ATCC
           6940]
          Length = 266

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 86/242 (35%), Gaps = 29/242 (11%)

Query: 39  SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD--------AFTRAWLL 90
              LI AD PYNL +N     P   +     +   + +  + +D         F      
Sbjct: 18  KAQLICADIPYNLGVNAYGSNPKWYVGGDNKNGESELAGKQFFDTDKDFRVPEFMHFASR 77

Query: 91  ACRRVLKPNG---TLWVIGSYHNIFRIGTMLQNLNF-WILNDIVWRKSNPMPNFRGRRFQ 146
             R+  K  G    + V  ++   + +    +   F   +N +  + S+P       +  
Sbjct: 78  MLRKEPKERGQAPAMIVFCAFDQQWALIEEAKKYGFNHYINLVFRKPSSPQVLKANMKVV 137

Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
              E  +    +   K   F        N     R    IP              K+HPT
Sbjct: 138 GNAEYALIFYRNKLPK---FRNHGRMVMNIMDWARDGSHIP--------------KVHPT 180

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           QKP AL+ R++   T P D+++DP  GSG +   A+ L R   G E+K+D+       + 
Sbjct: 181 QKPVALMERLIDLFTDPDDVVIDPCAGSGATLVAAENLGRKSYGFEIKKDFCQAFENEMR 240

Query: 267 SV 268
             
Sbjct: 241 HA 242


>gi|209883964|ref|YP_002287821.1| ParB domain protein nuclease [Oligotropha carboxidovorans OM5]
 gi|209872160|gb|ACI91956.1| ParB domain protein nuclease [Oligotropha carboxidovorans OM5]
          Length = 455

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 87/253 (34%), Gaps = 27/253 (10%)

Query: 21  DKIIKGNSISVL---EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD-AVTDSWDKFS 76
            +++ G+S +++     +  +   L   DPPY +  +G  +   +     +   +WD  S
Sbjct: 176 HRLLCGDSTNIVDVRRLMNGERAILFATDPPYLVDYDGTNHPTQNKDWSPSYGTTWDDSS 235

Query: 77  -SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
              E YD F  A +             +   +      +    +    ++   IVW K  
Sbjct: 236 QGAELYDEFIAAAVAEAIAEDAA---WYCWHASRRQAMLEACWEKAGAFVHQQIVWVKER 292

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            +          +H         P   G+       K A E +     WL+P  +  ER 
Sbjct: 293 GV-------LTRSHYL---WKHEPCFMGWIKGKRPPKVAEETLPST--WLLPSFAKDERP 340

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                   HPT KP       +      G +  +PF GSG+     +   R    +E+  
Sbjct: 341 D-------HPTPKPLDAFGIPMRQHVTRGGLCYEPFCGSGSQIMAGEANDRRVYAMEISP 393

Query: 256 DYIDIATKRIASV 268
            Y+D+A +R  + 
Sbjct: 394 AYVDVAIERWQAA 406


>gi|15838888|ref|NP_299576.1| DNA methylase [Xylella fastidiosa 9a5c]
 gi|9107461|gb|AAF85096.1|AE004041_8 DNA methylase [Xylella fastidiosa 9a5c]
          Length = 156

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/177 (28%), Positives = 71/177 (40%), Gaps = 23/177 (12%)

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           A++  WL  CRRV +P G L V   +  +  +   +Q+   W    IV     P    + 
Sbjct: 2   AWSSQWLSECRRVTRPGGVLLVFTDWRMLPTLTDAVQSAG-WAWQGIVVWDKTPACRPQL 60

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
            RF++  E ++WAS          N  A                    G         EK
Sbjct: 61  GRFRSQAEFIVWASCGLM------NPKAHPV--------------TPVGVFPTGTAPREK 100

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ-DYI 258
            H   KP AL+  ++     P   ILDPF GSGT+G  A +    FIG+EM +  Y+
Sbjct: 101 RHQVGKPLALMEHLIKI-VPPASTILDPFAGSGTTGVAALRAGHRFIGMEMSRFKYV 156


>gi|157311255|ref|YP_001469299.1| gp66 [Mycobacterium phage Tweety]
 gi|148540884|gb|ABQ86135.1| gp66 [Mycobacterium phage Tweety]
          Length = 218

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 84/250 (33%), Gaps = 53/250 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            +  G+ + + E L     D++  DPPY +             +    D           
Sbjct: 11  TLYHGDCLEITEWLA---ADVLVTDPPYGMSYQSGRRAEKFQAIAGDKDVQ--------- 58

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
               R   LA     +P     V G++                 +   +           
Sbjct: 59  ---CRDRTLAVWGTERPAA---VFGTWRV----------AKPANVQQCLIWDKRGAGPGM 102

Query: 142 GRRFQ---NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           G        +HE +           Y   + A ++           +I   S    L ++
Sbjct: 103 GDLTTAFGTSHEEI-----------YLIGHWAKRSTRRGS------VITTESSPSALTSR 145

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            G   HPT KP  L+  I+ ++  P  ++ DPF GSG++   A+ L R  I +E+++ Y 
Sbjct: 146 IG---HPTPKPIGLMETIIAAA--PEGVVADPFAGSGSTLVAARNLGRKAIDVELEEKYC 200

Query: 259 DIATKRIASV 268
           +I  KR+  +
Sbjct: 201 EIIAKRLDQM 210


>gi|298369708|ref|ZP_06981025.1| modification methylase LlaDCHIB [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298282265|gb|EFI23753.1| modification methylase LlaDCHIB [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 90

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 5/88 (5%)

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
           M+  W     + +E+   K     HPTQKP ALL R +++++  GD+I DPF GSGT+G 
Sbjct: 1   MKCVWTFTPPNKTEKTFGK-----HPTQKPLALLKRCILAASNTGDLIFDPFMGSGTTGV 55

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            A K  R F G E + ++ ++A KR+ +
Sbjct: 56  AALKYGRKFCGCEQETEFFELAKKRLEN 83


>gi|171060953|ref|YP_001793302.1| DNA methylase N-4/N-6 domain-containing protein [Leptothrix
           cholodnii SP-6]
 gi|170778398|gb|ACB36537.1| DNA methylase N-4/N-6 domain protein [Leptothrix cholodnii SP-6]
          Length = 447

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 65/355 (18%), Positives = 125/355 (35%), Gaps = 95/355 (26%)

Query: 37  AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
            K   LI+ DPPY   L+ Q    +H+  DA++D+         Y  F R  L+    +L
Sbjct: 91  GKKATLIYLDPPYATGLDFQSRDQEHAYNDALSDA--------GYIEFIRRRLILMLELL 142

Query: 97  KPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETL--- 152
              G+++V   +  +  +  +L  +       +I+ R+     NF   ++ N ++ +   
Sbjct: 143 SDQGSIYVHIGHQMLGEMKLILDEVFGAKNFRNIITRRKCSSKNFTKHQYANLNDYILFY 202

Query: 153 --------------------------------------------------IWASPSPKAK 162
                                                             +W    P A 
Sbjct: 203 SKSDSYTWNQPMENPDPDWIAKEYPKVDSKGQYKLVPVHAPGTRRGETGGLWRGEMPPAG 262

Query: 163 GYT---------FNYDALKAANEDVQMRSDWLIPICSG------SERLRNKDGEKL---- 203
            +          F+       +++   R    +P   G       ++ R+   + +    
Sbjct: 263 KHWQYTPTRLDEFDAKGEIHWSKNGNPRRKVYLPADKGLALTDYWDKYRDAHHQSILITG 322

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +PT+K   ++  I+ +S+ PGD+++DPF GSG++   A  L R +IGI+     +  A K
Sbjct: 323 YPTEKNFEMMKMIVAASSNPGDLVIDPFSGSGSTVHAADVLGREWIGIDQSLLAVKTAIK 382

Query: 264 RI------------ASVQPLGNIELTVLTGKRTEPRVAFNLLVERGL--IQPGQI 304
           R+                P    E    T +       F+LLV+  +  + P ++
Sbjct: 383 RLTLGRNPMGDFVKGETPPDLFSEFKASTVQHETVSAEFSLLVDHEISKLHPAEV 437


>gi|168183994|ref|ZP_02618658.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum Bf]
 gi|237794621|ref|YP_002862173.1| DNA methylase [Clostridium botulinum Ba4 str. 657]
 gi|182672994|gb|EDT84955.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum Bf]
 gi|229262760|gb|ACQ53793.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum Ba4 str.
           657]
          Length = 268

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 89/242 (36%), Gaps = 28/242 (11%)

Query: 39  SVDLIFADPPYNLQLN-----------GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT-R 86
              L+ AD PYN+  N           G     +         + D+  +   Y  F  R
Sbjct: 26  KAQLVIADIPYNIGKNAYGSNPEWYIGGNNKNGESKKAGKTFFNTDENFNIAEYFHFCNR 85

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF- 145
             +   +   K    +    S+  I  +    +   F     + + K+      +     
Sbjct: 86  LLIKEPKEKGKSPAMIV-FCSFEQIPTVIEYGKKHGFKNSYPLFFIKNYSAQVLKANMKI 144

Query: 146 --QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
                H  +++    PK      N        + +    +W        +R   K+  K+
Sbjct: 145 VGATEHAVVLYRDKLPKFN----NGKKETGKGKMIFNWFEW--------KRDSKKEYPKV 192

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPTQKP ALL +++   T  GD+++DP  GSG++     +L RS  G E+ +++   A +
Sbjct: 193 HPTQKPIALLKQLIEIFTDEGDVVIDPVAGSGSTLRACMELNRSSYGFEVSKEFYKKAQE 252

Query: 264 RI 265
           ++
Sbjct: 253 QM 254


>gi|42559533|sp|Q9LAI2|MTB1_BACSQ RecName: Full=Modification methylase BslI; Short=M.BslI; AltName:
           Full=N(4)- cytosine-specific methyltransferase BslI
 gi|6958314|gb|AAF32529.1|AF135191_2 BslIM [Bacillus sp. NEB-606]
          Length = 912

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 59/301 (19%), Positives = 102/301 (33%), Gaps = 60/301 (19%)

Query: 1   MSQKNSLAINENQNSIFEWKD---------KIIKGNSISVLEKLPAKSVDLIFADPPYNL 51
           +     L + E+Q  +    +         K+I+G+S  VL+ +   +       PPY  
Sbjct: 621 LKNFTELYLPEDQRRVSPEINNFLNSGGRLKLIQGDSYEVLKSVEDNTFAAAVTSPPY-- 678

Query: 52  QLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG-TLWVIGSYHN 110
                               + ++ +   Y       +  C R LKP    L+ I    +
Sbjct: 679 ---------------YNAREYSQWPNLYLYFNDMYNIIKECFRTLKPGSVFLYNIADIVD 723

Query: 111 IFRIGT-----------------MLQNLNFWILNDIVWRKSNPMPNFRGR---------R 144
              I                     Q   F +L++I+W K  P  N +           +
Sbjct: 724 NENIIVKSSMGNKRIPLGAYTIYFFQKAGFELLDNIIWDKGEPQSNRQKNDGKFTPHYQK 783

Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
             NA+E +     +      + ++ +                P+   + +  N  G   H
Sbjct: 784 PLNAYEHMFIFKKTGAPLTLSDDWQS---KRGSWIKNIVPFQPVFKINSKGENILG---H 837

Query: 205 PTQKPEALLSRILVSSTKP-GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
               PE +   +    TK   DIILDPF GS TS   + K  R  +GIE+  DY++++  
Sbjct: 838 TAPFPEDIPRFVANVFTKHDNDIILDPFSGSLTSAIASYKSNRIGLGIELSPDYVELSRD 897

Query: 264 R 264
           R
Sbjct: 898 R 898


>gi|330996254|ref|ZP_08320144.1| DNA (cytosine-5-)-methyltransferase [Paraprevotella xylaniphila YIT
           11841]
 gi|329573758|gb|EGG55349.1| DNA (cytosine-5-)-methyltransferase [Paraprevotella xylaniphila YIT
           11841]
          Length = 233

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 57/247 (23%), Positives = 94/247 (38%), Gaps = 41/247 (16%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYN-----LQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            + +  ++ +P K  +L   DPPY      L   G+          A           + 
Sbjct: 1   MDCMEYMKSVPDKFFELAVVDPPYFDGPNKLGYYGKEISSFGIKRPAYK--------VKH 52

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           +    + +     RV K    +W +  Y               +    IVW K N   +F
Sbjct: 53  WGIPLKRFFEELFRVSKEQ-IVWGVNYYPY-----------GIFSSGRIVWNKVNGKSSF 100

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
                  +   + + S     + +T+ +      N   Q +S     +  G +R   K+ 
Sbjct: 101 -------SDCEIAFCSMIDTVRMFTYMW------NGMCQGKSLKEGHLQQGDKR---KNE 144

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +++HPTQKP AL + +L +   PGD ILD   GSG+S   A K+   F G E+ ++Y D 
Sbjct: 145 KRIHPTQKPVALYAWLLQNYANPGDKILDTHLGSGSSRIAAYKMGFDFYGTEIDKEYFDA 204

Query: 261 ATKRIAS 267
             KR   
Sbjct: 205 QEKRFRE 211


>gi|296531888|ref|ZP_06894691.1| DNA (cytosine-5-)-methyltransferase [Roseomonas cervicalis ATCC
           49957]
 gi|296267754|gb|EFH13576.1| DNA (cytosine-5-)-methyltransferase [Roseomonas cervicalis ATCC
           49957]
          Length = 488

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 53/290 (18%), Positives = 95/290 (32%), Gaps = 34/290 (11%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            ++  G+S    +V   + A    L+F  PPY  Q +                 WD    
Sbjct: 201 HRLACGDSANRSTVARVMAADHAALLFTSPPYGNQRDYTTGGVS---------DWDALM- 250

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR-IGTMLQNLNFWILNDIVWRKSNP 136
            +         L    +VL   G +   G +   ++     ++   +       W +   
Sbjct: 251 -QGVFQHLDGALRRDAQVLVNLGLIHREGEWQPYWQGWLDWMRGQGWRRFGLYAWDQGPG 309

Query: 137 MPNFRGRRFQNAHETLIWASPS--------PKAKGYTFNYDAL------KAANEDVQMRS 182
           +P     R   A E +   +          P     T N  +       +          
Sbjct: 310 LPGDWNGRLAPAFELVFHFNREARQANKIVPCKWAGTPNKGSGLRAADGEVKAYTHIGLP 369

Query: 183 DWLIPICSGSERLRNKDGEKL---HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
              + I     R+    G  +   HP   P AL   ++ + T   D++ +PF GSGT+  
Sbjct: 370 VQEMRIPDSVLRITRHKGRGIETEHPAVFPVALPEFLMRAYTDECDVVFEPFGGSGTTIL 429

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
             ++  R    IE+   Y+D+A  R   + P  ++ +T+    R    VA
Sbjct: 430 AGQRTGRRVRAIELAPAYVDLAIARWRMLHP--DLPVTLAEDGRDYDSVA 477


>gi|242309402|ref|ZP_04808557.1| modification methylase HhaII [Helicobacter pullorum MIT 98-5489]
 gi|239523973|gb|EEQ63839.1| modification methylase HhaII [Helicobacter pullorum MIT 98-5489]
          Length = 213

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 96/232 (41%), Gaps = 27/232 (11%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K+  +  + +++L+ L + S+DL F DP Y   L+   Y  +            + +  +
Sbjct: 2   KNTKLTIDGLTLLKSLESASIDLCFFDPQYRGVLDKMRYGNEGERQKG------RSALIQ 55

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGS-YHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
             +   +++++   RVLKP+  L +    +H    +G  L +    I++ I W K     
Sbjct: 56  MSEESIKSFIIEINRVLKPSCYLMLWIDKFHLCEGVGAWLDSTLLQIVDLITWDKGK--- 112

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
              G R +   E L+     P     T+         +   +R     P+        +K
Sbjct: 113 MGMGYRTRKQSEYLLVIQKKPIKAKGTW---------KLHTIRDVCHEPL--------SK 155

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           +  K HP  KP+ L   ++ S T  GD++ DP  GS +     K+L R FIG
Sbjct: 156 EELKAHPHSKPKKLQKMLIESCTNKGDLVCDPAAGSFSVFECCKELERDFIG 207


>gi|299134373|ref|ZP_07027566.1| DNA methylase N-4/N-6 domain protein [Afipia sp. 1NLS2]
 gi|298591120|gb|EFI51322.1| DNA methylase N-4/N-6 domain protein [Afipia sp. 1NLS2]
          Length = 765

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 141/365 (38%), Gaps = 99/365 (27%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVD----------LIFADPPYNL 51
           +Q++    +     +  W +K+I G++  +L  L    +           LI+ DPP+++
Sbjct: 80  AQQDLFLTDSRGRQLQGWTNKLIWGDNKLILSSLKNGPLREEIERQGGLKLIYIDPPFDV 139

Query: 52  Q--------LNGQLYRPDHSLVD--AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
                    +    +    ++++  A  D+W + S  +++ +     L+  R +L  +G+
Sbjct: 140 GADFSMPVEIGDDTFTKKPNILEEIAYRDTWGRGS--DSFISMVYERLILMRDLLAGDGS 197

Query: 102 LWV-----------------IGSYHN----IFRIGTMLQNLNF----------------W 124
           ++V                  GS H+    I+R      +                   W
Sbjct: 198 IYVHTGPNVNHLLRSALDEVFGSSHHLNEIIWRRAFAHNDSGRCGIIHDSILFYSKGDTW 257

Query: 125 ILNDIVWRKS-----------NPMPNFRGRR---FQNAHE---TLIWASPSPK-AKGYTF 166
           I N+++ + S           +P+   R  R       H     L++       A G T+
Sbjct: 258 IWNEVLQKPSPDYIEQFFDQYDPVRGERYNRLPLDAPRHGDGGNLVYEWKGAWPAPGRTW 317

Query: 167 NYDALKAANEDVQMRSDW---------------------LIPICSGSERLRNKDGEKL-H 204
            Y        D + R  +                     L  I +   ++ N+  E L +
Sbjct: 318 AYKREHMERFDREGRIHYPKKEGGKPRLKDFESDYKGMVLQDIWTDINKIHNQSVELLGY 377

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            TQKPEALL R++ +S+  GD++ D F GSGT+ AVA+KL R +I  ++ +  +    KR
Sbjct: 378 ATQKPEALLDRVIRASSNRGDLVADFFCGSGTTAAVAEKLGRKWIASDLGKFAVHTTRKR 437

Query: 265 IASVQ 269
           +  VQ
Sbjct: 438 MIGVQ 442


>gi|312864600|ref|ZP_07724831.1| DNA (cytosine-5-)-methyltransferase [Streptococcus downei F0415]
 gi|311099727|gb|EFQ57940.1| DNA (cytosine-5-)-methyltransferase [Streptococcus downei F0415]
          Length = 456

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/201 (25%), Positives = 79/201 (39%), Gaps = 29/201 (14%)

Query: 93  RRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL 152
           R VL  +G++++   +H    I  ++  +            S        + F   H+ +
Sbjct: 3   REVLSDDGSIYIHLDWHKAHYIKVLMDEVFGEGRFINNIIWSYRTGAGGKKEFNKQHDDI 62

Query: 153 IWASPSPKA-------KGYTF---------NYDALKAA--------NEDVQMRSDWLIPI 188
           +  S +          K YT          NY                   MR  W IP 
Sbjct: 63  LLYSKTEHRIFNQLKEKSYTKAKGRKAGITNYGGSNTEFFEDSNGVYRWSTMRDVWDIPY 122

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
            +   +         +PTQKPE LL RI+  S+  GD++LD F GSGT+ AVA+KL R +
Sbjct: 123 INSQAK-----ERVGYPTQKPEKLLERIIKVSSNEGDLVLDCFGGSGTTAAVAEKLGRRW 177

Query: 249 IGIEMKQDYIDIATKRIASVQ 269
           I ++     I    KRI  ++
Sbjct: 178 ITVDAGILSIYTIQKRILGLE 198


>gi|315924885|ref|ZP_07921102.1| type III restriction-modification system methylation subunit
           [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621784|gb|EFV01748.1| type III restriction-modification system methylation subunit
           [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 582

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 70/309 (22%), Positives = 115/309 (37%), Gaps = 67/309 (21%)

Query: 13  QNSIFEWK-DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
           +N  F+ K + IIKGN++  L  L       V  ++ DPP+N   +   Y          
Sbjct: 165 ENITFDEKDNLIIKGNNLIALSSLLKRYEGKVKCVYIDPPFNTGSDSFNY---------- 214

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWIL 126
               DKF S   +  F +  L   +R+L   G ++V    +    + T+   +      +
Sbjct: 215 ---NDKF-SRSTWLVFMKNRLELAKRLLHVTGNIFVHIDINQSHYLKTLCDGIFGEDNFV 270

Query: 127 NDIVWRKSNPMPNFRG-RRFQNAHETLIWASP-----------SPKAKGYTFNYDALKAA 174
            +I+W   +P        +  N H+ ++  +             P ++ Y  ++      
Sbjct: 271 EEIIWAYGSPSGGRAATPKPVNIHDYILHYAKSYSERKQNRVYVPYSEKYIKDWFKYIDD 330

Query: 175 NEDVQMRS---------------------------DWLIPICSGSERLRNKDGEK----- 202
           +     R                             W       ++    KDG K     
Sbjct: 331 DGRKYRRRQRGKDENGNPIWTKQYLDESKGVPLSTVWNDIQQVYADPRAYKDGNKTDVEV 390

Query: 203 ---LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
                  QKPEAL+ RIL  +T  GD++LD   G+GTS A A KL R +IG+E   + ID
Sbjct: 391 LKEFKGGQKPEALIKRILEMATDEGDLVLDFHIGTGTSAATAHKLNRKYIGVEQMVNQID 450

Query: 260 IATKRIASV 268
           +   R+  V
Sbjct: 451 LILPRLQKV 459


>gi|254169291|ref|ZP_04876123.1| DNA methylase domain protein [Aciduliprofundum boonei T469]
 gi|289596730|ref|YP_003483426.1| DNA methylase N-4/N-6 domain protein [Aciduliprofundum boonei T469]
 gi|197621768|gb|EDY34351.1| DNA methylase domain protein [Aciduliprofundum boonei T469]
 gi|289534517|gb|ADD08864.1| DNA methylase N-4/N-6 domain protein [Aciduliprofundum boonei T469]
          Length = 849

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 61/259 (23%), Positives = 101/259 (38%), Gaps = 30/259 (11%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K KII G+S  VLE    K  +++   PPY    N + Y    +L + + D ++     +
Sbjct: 591 KMKIIVGDSYKVLELFKNKITNMV-TSPPY---YNAREYSKWDNLFNYLNDIYNII--LK 644

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI------GTMLQNLNFWILNDIVWRK 133
           A+DA  +  +         +    ++ S     RI        + +   F +L+DI+W K
Sbjct: 645 AHDALIKGGVFFYNIGDIFDNENIIVKSKMGEKRIPLGAYTILIFEKAGFELLDDIIWYK 704

Query: 134 SNPMPNFRGR---------RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
             P  N             R  N +E +                +    +N         
Sbjct: 705 GEPQSNRHKNDGMYTPYYQRPTNCYEHMFIFKKEGDVIINKDKDEIKIKSN------IIK 758

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
             P+    +   N+ G   H    P+ +    + + T  GDI+LDPF GSGT+  VA   
Sbjct: 759 FAPVVKIGKGGENRYG---HTAPFPKMIPLLSISTFTNQGDIVLDPFSGSGTTPIVASIN 815

Query: 245 RRSFIGIEMKQDYIDIATK 263
            R  IGIE+ ++Y  ++ K
Sbjct: 816 GRKAIGIEINKEYALLSIK 834


>gi|284109435|ref|ZP_06386482.1| DNA methylase N-4/N-6 domain protein [Candidatus Poribacteria sp.
           WGA-A3]
 gi|283829822|gb|EFC34119.1| DNA methylase N-4/N-6 domain protein [Candidatus Poribacteria sp.
           WGA-A3]
          Length = 139

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 13/143 (9%)

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
            + I W K  PMP     R  NA E +   S +     Y ++  A++            L
Sbjct: 1   RSKITWVKKAPMPESVKNRPSNATEEVFLFSKTA---NYYYDNQAVREETGANLKNYWLL 57

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
            P  SG+           HP   P+ L  R ++  T+P D++LDPF GSGT+G VA +L 
Sbjct: 58  GPDSSGTP----------HPAVFPKELARRCILLGTRPRDLVLDPFSGSGTTGLVAAELN 107

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  + IE+ ++Y+  +  R+ +V
Sbjct: 108 RRAVLIELNEEYVAHSKTRLDTV 130


>gi|254415251|ref|ZP_05029013.1| DNA methylase [Microcoleus chthonoplastes PCC 7420]
 gi|196178057|gb|EDX73059.1| DNA methylase [Microcoleus chthonoplastes PCC 7420]
          Length = 299

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 66/310 (21%), Positives = 110/310 (35%), Gaps = 86/310 (27%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           + ++   SV L F  PPY +  +                 ++K  +FE++ +  R  +  
Sbjct: 1   MLEIEPNSVALSFWSPPYFVGKD-----------------YEKEETFESWQSLLRQVIHN 43

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTM-------LQNLNFWILNDIVWRKSNPMPNF---- 140
             ++LKP G L +  +    F+   M       + N    +  ++V       P++    
Sbjct: 44  HYQILKPGGFLVINIADILCFKDKYMPRIQALNISNQKCKVTREMVLEARQKHPDYNRYE 103

Query: 141 ---------------------RGRRFQ--------------NAHETLIW------ASPSP 159
                                RG ++Q               A+E  I+          P
Sbjct: 104 LASLLGCSEQTIDRRLNGNNIRGGKYQVQTRVKLVGNYIEKYAYEVGIYLYDKRVWVKDP 163

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL---------------- 203
                 +  + LKA NE   +   W         R  +KD  K                 
Sbjct: 164 SWVNSQWTSNTLKAVNEYEDLYIFWKPGEYVIDRRKLSKDEWKSWGSRGLWYINSVRVND 223

Query: 204 -HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            H  + PE L SR++   ++  D+ILDPF GSGT+   A K  R++IGIE +  Y+ +A 
Sbjct: 224 DHEAKFPEELASRVIRLFSEENDLILDPFMGSGTTAVAAIKHNRNYIGIEKEAKYVKLAK 283

Query: 263 KRIASVQPLG 272
           KRI  +    
Sbjct: 284 KRIRELSSFQ 293


>gi|190573864|ref|YP_001971709.1| putative DNA methylase [Stenotrophomonas maltophilia K279a]
 gi|190011786|emb|CAQ45406.1| putative DNA methylase [Stenotrophomonas maltophilia K279a]
          Length = 483

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 50/285 (17%), Positives = 89/285 (31%), Gaps = 50/285 (17%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLAC-- 92
           +   +  L F  PPY  Q +                          +DA  R        
Sbjct: 208 MQGDTASLCFTSPPYGNQRDYTSGGIS------------------DWDALMRGVFANLPM 249

Query: 93  ---RRVLKPNGTLWVIGSYHNIFR-IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
               +VL   G +         +      +++  +      VW +   MP     R   +
Sbjct: 250 AADGQVLVNLGLIHRDNEVIPYWDGWLAWMRSQGWRRFAWYVWDQGPGMPGDWQGRLAPS 309

Query: 149 HETLIWAS-------PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS--------- 192
            E +   +            K            +       D  +   +           
Sbjct: 310 FEFVFHFNRESRKPNKIVPCKHAGQESHLRADGSSTAMRGKDGEVGGWTHKGQPTQDTRI 369

Query: 193 -------ERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
                   R + K G+ + HP   P AL   ++ + T  GDI+ +PF GSGT+   A++ 
Sbjct: 370 PDSVIRVMRHKGKIGQDIDHPAVFPVALPEFVIEAYTDAGDIVFEPFGGSGTTMLAAERT 429

Query: 245 RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
            R    +E+   Y+D+A KR     P   + +T+    ++  +VA
Sbjct: 430 GRICRSVEIAPQYVDVAIKRFQQNHP--GVPVTLAATGQSFEQVA 472


>gi|255020318|ref|ZP_05292386.1| ParB domain protein nuclease [Acidithiobacillus caldus ATCC 51756]
 gi|254970238|gb|EET27732.1| ParB domain protein nuclease [Acidithiobacillus caldus ATCC 51756]
          Length = 510

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 89/287 (31%), Gaps = 55/287 (19%)

Query: 21  DKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            ++I  +S     +   +  +   L+F  PPY  Q N                       
Sbjct: 182 HRLICADSADSAAIERLMAGERAALLFTSPPYANQRNYTTG------------------G 223

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVI-------GSYHNIFR-IGTMLQNLNFWILNDI 129
              +DA       A   +++ +G + V        G +   +      ++   +      
Sbjct: 224 IADWDALMHGVFAAAMPIMRADGQMLVNLGLVHRDGEWQPYWDGWIEWMRAQGWRRFGWY 283

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWAS----------PSPKAKGYTF------------N 167
           VW +   +P     R    HE +   +          P   A   T              
Sbjct: 284 VWDQGVTVPGDWVGRLAPRHEFIFHFNREARKPNKIVPCKWAGQETHLRADGSSTAMRGK 343

Query: 168 YDALKAANEDVQMRSDWLIP----ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKP 223
              + A         D+ IP      +      +K+ E  HP   P  L   ++ + T  
Sbjct: 344 DGKVGAWCHAGLPTQDYRIPDSVISITRQRGPIDKEREIDHPAVFPIGLPQFVMEAYTNE 403

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
           GD++ +PF GSGT+    +   R     E+  +Y+D+A  R     P
Sbjct: 404 GDVVFEPFSGSGTTILAGEACGRRVRASELAPEYVDVAVIRWIKNHP 450


>gi|297374639|emb|CBL42926.1| DNA methylase N-4/N-6 domain protein [Candidatus Magnetobacterium
           bavaricum]
          Length = 382

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 87/226 (38%), Gaps = 27/226 (11%)

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPM 137
           AY       L+  RRVLK  G++++         +  ++  +       N+IVW      
Sbjct: 3   AYLVMMCVRLIELRRVLKDTGSIYLHCDPTASHYLKIVMDAIFGVKNFRNEIVWCYRGGG 62

Query: 138 PNFR--GRRFQNAHETLIWASPSPKAKGY-------------------TFNYDALKAANE 176
              +  GRR    H+ ++  S +     Y                    +          
Sbjct: 63  TPRKDFGRR----HDVILRYSKTNDYLFYSDPVRVPYQAEGIERTDDAMWGKHKGTDKVY 118

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
                        S +    N      + TQKP  LL RI+ +S+K GD++LDPF G GT
Sbjct: 119 KPHPLGKVPEDWWSMNILNANDPERLGYQTQKPGTLLERIVNASSKEGDLVLDPFCGCGT 178

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
           + AVA+KL R +IGI++     ++   R+  +  L       +TG+
Sbjct: 179 TVAVAQKLNRQWIGIDITHLATNLIKLRLKCLFDLEPKRDYDVTGE 224


>gi|311105221|ref|YP_003978074.1| C-5 cytosine-specific DNA methylase 1 [Achromobacter xylosoxidans
           A8]
 gi|310759910|gb|ADP15359.1| C-5 cytosine-specific DNA methylase 1 [Achromobacter xylosoxidans
           A8]
          Length = 253

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 56/255 (21%), Positives = 88/255 (34%), Gaps = 40/255 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            +  G+   +L  LP   VD +  DPPY        +    S   +V     K       
Sbjct: 10  TVYCGDCREILPTLP--QVDAVITDPPYGQAYKVNTFYKGGSRESSVVQRNGKTL----- 62

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                       RVL        I      F    +L +L   +L     +  + +P  R
Sbjct: 63  ------------RVLPN--LHAEIDGDDEPFDPSHLL-DLAPSVLIWGAHKFGHLLPQGR 107

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV-----QMRSDWL-IPICSGSERL 195
                     L+     P  K  +         N +        R  W  + +  G+   
Sbjct: 108 ----------LLVWDKVPTGKIRSQGDGETAWTNVNPNGPLRMFRLLWDGLCVGEGARHE 157

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMK 254
                ++ HP QKPE L+   +  +  P  ++ DP+ GSG++G  A +     F GIE +
Sbjct: 158 VTAGQKRHHPMQKPEILMRWSIEQAGFPRRLV-DPYMGSGSTGVAAVQTGCEAFFGIESQ 216

Query: 255 QDYIDIATKRIASVQ 269
             Y DIA +RI + Q
Sbjct: 217 ISYFDIACRRIEAAQ 231


>gi|15646208|ref|NP_208161.1| adenine-specific DNA methylase [Helicobacter pylori 26695]
          Length = 809

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 71/320 (22%), Positives = 115/320 (35%), Gaps = 74/320 (23%)

Query: 22  KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS------- 71
            +IK  +   L  L     +++D I+ DPPYN Q N  +Y  +      ++         
Sbjct: 377 TLIKSENYQALNSLKNRYKEAIDCIYIDPPYNTQNNEFIYADNFKRSSWLSMMENRLELA 436

Query: 72  ----WDKFSSFEAYDAFTRAWLLACRRVLKPNGT---LWVIGSYHNIFRIGT-------- 116
                DK + F + D   +A+L      +   G         S+     +          
Sbjct: 437 RKLLNDKGAMFVSIDDNEQAYLKVLMDEVFNGGGGDNFVASISWKQFHSVKNDAANFSKN 496

Query: 117 ---------------------------MLQNLNFWILNDIVW----------------RK 133
                                       L++ N +   D VW                  
Sbjct: 497 IEYILCYCKNFSKNLISNEPFDKSNLYKLKDENGFYKLDPVWAKSGNNFSPYTFLNGKTW 556

Query: 134 SNPMPNFRGR-----RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
           S P   F        +    +  +++   +P AK Y  +  A    +      S+    +
Sbjct: 557 SPPSGTFWRYSIGTLKDMEQNNRIVFNGKNPMAKRY-LSEVAEGRKSSTFWDGSEVGYNL 615

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
              +E  +  +G K+    KPEALL RIL  STK  D++LD F GSGT+ AVA K++R +
Sbjct: 616 NGDAEIKQLFNGNKVFNNPKPEALLQRILEISTKENDLVLDFFAGSGTTCAVAHKMKRKY 675

Query: 249 IGIEMKQDYIDIATKRIASV 268
           IGIEM + +  +   R+  V
Sbjct: 676 IGIEMGEHFESVILPRLKKV 695


>gi|326388796|ref|ZP_08210380.1| DNA methylase N-4/N-6 [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206706|gb|EGD57539.1| DNA methylase N-4/N-6 [Novosphingobium nitrogenifigens DSM 19370]
          Length = 512

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 89/222 (40%), Gaps = 14/222 (6%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK--DGEKLHPTQKPE 210
           I+     KA+     Y +               +     S++  N     +    T KPE
Sbjct: 251 IYWGKDGKAQPSVIRYLSEVEGLVPWTWWPHTEVGHTDESKKECNALFGADVSFGTPKPE 310

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV-- 268
            LL RIL  +T PGD++LD F GSGT+ AVA K+ RS+IGIEM    +     R+  V  
Sbjct: 311 RLLERILHIATNPGDLVLDSFLGSGTTAAVAHKMGRSWIGIEMGDHAVSHCAPRLHKVID 370

Query: 269 -QPLGNIELTVLT--GKRTEPRVAFNLLVERGLIQPGQILTNAQGNIS-------ATVCA 318
            +  G  E       G  T  R+   +  + G I PG   T    +I             
Sbjct: 371 GEQGGISEAIGWKGGGGFTFYRLGEAVFDDTGAINPGIAFTPLAAHIWFAETGQPMAAAH 430

Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
           +G  +   + G +  +   + G ++ +G N    + LG + +
Sbjct: 431 NGPFLGSHDGGGLALLYNGILGDKSVSGGNVLTRKTLGMIRA 472



 Score = 65.8 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 17/146 (11%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + +I+G+++  L+ L       V  I+ DPPYN +              +  + +D    
Sbjct: 39  NMLIQGDNLEALKSLLPYYRGQVKCIYIDPPYNTR--------------SAFEHYDDNLE 84

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
              + A     L+  R +L  +G++WV    +    +  ++  +                
Sbjct: 85  HSQWLAMIWPRLVLLRELLAEDGSIWVSIDDNEGHYLKVIMDEVFGRRNFIASNVWQKRY 144

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKG 163
                    + HE L+  + SP+A  
Sbjct: 145 SRENREAIGDVHEYLMVYAKSPEAFK 170


>gi|328948065|ref|YP_004365402.1| DNA methylase N-4/N-6 domain protein [Treponema succinifaciens DSM
           2489]
 gi|328448389|gb|AEB14105.1| DNA methylase N-4/N-6 domain protein [Treponema succinifaciens DSM
           2489]
          Length = 671

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 65/343 (18%), Positives = 112/343 (32%), Gaps = 89/343 (25%)

Query: 20  KDKIIKGNSISVLEKLPAKS--VDLIFADPPYNLQLNGQLY---RPDHSLVDAVTD---- 70
           ++ +I+G  +S    L  K   VDL++ DPP+    +       R +  L  A+      
Sbjct: 61  QNLVIRGECVSACAYLKEKGILVDLVYIDPPFASGADYSKTVYIRQNPKLAKALKQAEEE 120

Query: 71  -SWDKFSSFEA-----------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
              +   SFE            Y  +    L A + V+    +++V   YH    +  ++
Sbjct: 121 LEIEDLKSFEEKMYGDVWNKEKYLNWMYENLCAIKSVMSETASIYVHLDYHIGHYVKILM 180

Query: 119 QNLN--FWILNDIVWRKSNP---MPNFRGRR-----------------FQNAHETLIWAS 156
             +       ++I+W+++        F                     FQ+  E  I   
Sbjct: 181 DEIFGEDNFRSEIIWKRATAHSDSGFFGNNYDMIYFYTKSDSAIFNTIFQDYDEKYIARF 240

Query: 157 PSPKAKGYTFNYDALKAA--------NEDVQMRSDWLIPICSGSER-------------- 194
                 G  ++     A          E    R+ W  P  +  +               
Sbjct: 241 KYKDPDGRLWDSGNPTAKGLQGGGYDYEYDGYRTLWRYPYETLKKMDEEGRLYRTKNGGI 300

Query: 195 ------------------------LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
                                       D    + TQKPEALL RI+ +S+    ++ D 
Sbjct: 301 RTKVYLDELKGMPCQALWTDINAVNSQADERIDYATQKPEALLERIIKASSDENMLVADF 360

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           F GSG + AVA KL R FI  ++  + I     R+ + +   N
Sbjct: 361 FGGSGVTAAVANKLNRRFIHCDVGINSIQTVRDRLIAQKETPN 403


>gi|261414483|ref|YP_003248166.1| DNA methylase N-4/N-6 domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261370939|gb|ACX73684.1| DNA methylase N-4/N-6 domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302327525|gb|ADL26726.1| putative type II DNA modification methyltransferase [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 292

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 97/287 (33%), Gaps = 43/287 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL------------NGQLYRPDHS------ 63
           K+   +    +E     ++  I  DPPY ++             +G ++R          
Sbjct: 4   KVFNEDCFDWMENQSENTITAIVTDPPYGVKEYTEKELVKKRAGSGGIWRIPQKFDGCTR 63

Query: 64  ----LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
                   + D  ++  +   Y  F R W    +++L P G +++  +      +G+ L+
Sbjct: 64  QPVPRFSVINDDPEERKNV--YLFFER-WARLAKKILVPGGHIFLASTPLLSDIVGSALR 120

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNA--------------HETLIWASPSPKAKGYT 165
           +       +I+           G R +NA               E           K   
Sbjct: 121 SAGLEKRGEIIRSVCTLRG---GDRPKNAEDEFPELSVIPKALWEPWCLYRKPLAEKTVA 177

Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK-PG 224
            N    KA                   +  + +     HP+ KP++ L +I+ ++     
Sbjct: 178 ENLRVWKAGALRRPAIDRPFSDFIQSEKTPKIERDIVNHPSIKPQSFLRQIVRAALPLGE 237

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
            I+LDPF GSG++ A A  L    IG+E   ++   +   I  +  L
Sbjct: 238 GIVLDPFSGSGSTLAAADYLGYDSIGVEKDTEFFRQSLHAIPKLSKL 284


>gi|227833763|ref|YP_002835470.1| hypothetical protein cauri_1939 [Corynebacterium aurimucosum ATCC
           700975]
 gi|262184838|ref|ZP_06044259.1| hypothetical protein CaurA7_12648 [Corynebacterium aurimucosum ATCC
           700975]
 gi|227454779|gb|ACP33532.1| hypothetical protein cauri_1939 [Corynebacterium aurimucosum ATCC
           700975]
          Length = 261

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 51/242 (21%), Positives = 88/242 (36%), Gaps = 33/242 (13%)

Query: 39  SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD--------AFTRAWLL 90
              L+ AD PY+L  N     P   +     +   + +  + +D         F      
Sbjct: 18  KAQLLVADIPYSLGTNAYGSSPAWYIGGDNKNGESELAGKQFFDTDKDFRVPEFMHFASK 77

Query: 91  ACRRVLKPNG---TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF-- 145
             R   K  G    + V  S+     +    +   F    ++V+RK       +      
Sbjct: 78  MLRPEPKAKGQAPCMIVFCSFEQQIPLIEEAKRYGFKNYINLVFRKPTSPQVLKANMRVV 137

Query: 146 -QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
               +  +++    P      FN       N     +    IP              K+H
Sbjct: 138 GNAEYALILYRDKLP-----KFNNHGHMIMNVQDWAKDGKHIP--------------KVH 178

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PTQKP AL+ R++   T PGD+++DP  GSG++   A+ L R   G E+K+D+     ++
Sbjct: 179 PTQKPVALIERLIELFTDPGDVVIDPCAGSGSTLVAAENLGRRGYGFEIKKDFCRAFERQ 238

Query: 265 IA 266
           + 
Sbjct: 239 MR 240


>gi|256617858|ref|ZP_05474704.1| DNA modification methylase [Enterococcus faecalis ATCC 4200]
 gi|307269936|ref|ZP_07551262.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX4248]
 gi|256597385|gb|EEU16561.1| DNA modification methylase [Enterococcus faecalis ATCC 4200]
 gi|306513726|gb|EFM82332.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX4248]
 gi|315148884|gb|EFT92900.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX4244]
          Length = 254

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 98/247 (39%), Gaps = 32/247 (12%)

Query: 39  SVDLIFADPPYNLQLN-----------GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
              L+ AD PYNL  N           G++   + +  +      D+      +  F   
Sbjct: 24  KAQLVIADIPYNLGKNAYASSSAWYEGGKIENGESNKANKSFFDTDENFRISEFMHFCSK 83

Query: 88  WLL-ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW-RKSNPMPNFRGRRF 145
            L    + V K    +    ++  +  +    +   F     +V+ +KS+P       + 
Sbjct: 84  MLKKEPKEVGKAPAMIV-FCAFQQLQMVIDYGKKYGFNNHIPLVFIKKSSPQVLKANMKV 142

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
             A E  +        K            N D +M  +W        E   +    K+HP
Sbjct: 143 VGATEYALVLYREKLPK-----------FNNDGRMVLNWF-------EWETDNSYPKIHP 184

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           TQKP  ++ R++   T  GD+++DP  GSG++   A +L R+  G E+K++  ++A +++
Sbjct: 185 TQKPIPVIKRLIEIFTDYGDVVIDPCAGSGSTLRAAAELNRNAYGFEIKKEMYEVAQEKM 244

Query: 266 ASVQPLG 272
            S  P+G
Sbjct: 245 LSNIPMG 251


>gi|301029971|ref|ZP_07192957.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 196-1]
 gi|299877231|gb|EFI85442.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 196-1]
          Length = 172

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 47/217 (21%), Positives = 79/217 (36%), Gaps = 53/217 (24%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +       R   ++   V D W + +S E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RSGRTIAGDVNDDWLQPASNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK N  +     ++ I R     +   F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKNALMVSFYGWNRIDRFMAAWKRAGFSVVGHLVFTKNYTSKSAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
              R + A+        +   P P   G+ +                             
Sbjct: 108 VAYRHECAYILAKGRPALPQKPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
               G + HPT+KP   L  ++ S T P  I+LDP  
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPLC 172


>gi|255523619|ref|ZP_05390586.1| DNA methylase N-4/N-6 domain protein [Clostridium carboxidivorans
           P7]
 gi|255512674|gb|EET88947.1| DNA methylase N-4/N-6 domain protein [Clostridium carboxidivorans
           P7]
          Length = 307

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 52/253 (20%), Positives = 99/253 (39%), Gaps = 29/253 (11%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +I+G+    L  +   S+D I  D P+    + +                    SF  YD
Sbjct: 67  VIEGDGRD-LSIIEDNSIDCILTDHPWLDTKSNKGGS----------------RSFSDYD 109

Query: 83  AFTRAW--LLACRRVLKPNGTLWVI------GSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            F           RVLKP   L  I       ++  ++ I    +       + + W+K 
Sbjct: 110 CFRYNIDDFKEKARVLKPGCFLVEIIPSENENNFEYLYEIKKYAKECGLIYYSKVTWKKG 169

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N + N  GR+ +N+ + +I++    +A             N       + ++P  +  + 
Sbjct: 170 NFVSN-TGRKAKNSQDVMIFSKGKARAMRMDQKKTLKTGEN-CYMSGCNGMLP--TMFDV 225

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                 +++H ++ P +L  +IL   T  G+++LD F GSG  G  A   +R+ I IE+ 
Sbjct: 226 PPVSKNKRIHQSELPTSLCEQILEFVTYEGEVVLDSFAGSGAVGEAALNKKRNCILIELL 285

Query: 255 QDYIDIATKRIAS 267
           ++ +     R+  
Sbjct: 286 RENVVKIKSRLRD 298


>gi|13487817|ref|NP_108695.1| putative methylase [Lactococcus phage Tuc2009]
 gi|5001703|gb|AAD37103.1|AF109874_9 putative methylase [Bacteriophage Tuc2009]
          Length = 252

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 96/243 (39%), Gaps = 33/243 (13%)

Query: 39  SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF----TRAWLLACRR 94
              L+ AD PYNL  N         +     +   + ++ E +D         ++  C R
Sbjct: 20  KAQLVIADIPYNLGKNAYASSNAWYIDGDNKNGESEKANTEFFDTDKDFRIAEFMHFCNR 79

Query: 95  VL----KPNG---TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF-- 145
           +L    K  G    + V  ++  I  +    +   F     +V+ K       +      
Sbjct: 80  MLIKEPKEKGKAPAMIVFCAFQQIQMVMDYGEKYGFKHAYPLVFIKDYSAQVLKANMKIV 139

Query: 146 -QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
               +  +++    P      FN +     N     R +  IP              K+H
Sbjct: 140 GATEYAVVLYRDKLP-----KFNNNGEMIFNWMPWGRDNKTIP--------------KIH 180

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PTQKP+++L R++   T  GD I+DP  GSG++   + +L R+  G E+K+D+ ++A ++
Sbjct: 181 PTQKPQSVLKRLIEIFTDKGDTIIDPCMGSGSTIRASIELGRNAYGFEIKKDFYNLAKEK 240

Query: 265 IAS 267
           +  
Sbjct: 241 MLK 243


>gi|57237552|ref|YP_178566.1| site-specific DNA-methyltransferase, putative [Campylobacter jejuni
           RM1221]
 gi|57166356|gb|AAW35135.1| site-specific DNA-methyltransferase, putative [Campylobacter jejuni
           RM1221]
          Length = 250

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 89/240 (37%), Gaps = 36/240 (15%)

Query: 39  SVDLIFADPPYNLQLNGQLYRPDH------------SLVDAVTDSWDKFSSFEAYDAFTR 86
              LI AD PYNL  N     P+                 A  D+ + F   E     ++
Sbjct: 20  KAQLIIADIPYNLGNNAYASSPEWYINGDNKNGESKKANKAFFDTDNDFRVSEFMHFCSK 79

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF- 145
             +   +   K    +    S+     +  + +   F    ++V+RK +     +     
Sbjct: 80  MLIKEPKECGKSPCMIV-FCSFEQQAMLIEVAKKYGFNHCINLVFRKQSSSQVLKANMKI 138

Query: 146 --QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
                +  +++    P      FN D     N       DW           +++   K+
Sbjct: 139 VGNCEYALILYREKLP-----KFNNDGKMIYN-----CMDWQ----------KDEGIPKV 178

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPTQKP  LL R++   T  GD+++DP  GSG++   A  L R   G E+K+D+   A +
Sbjct: 179 HPTQKPVKLLERLITIFTDAGDVVIDPCAGSGSTLLAACNLNRKAYGFEIKKDFFKSANE 238


>gi|229125143|ref|ZP_04254294.1| hypothetical protein bcere0016_54070 [Bacillus cereus 95/8201]
 gi|228658310|gb|EEL13999.1| hypothetical protein bcere0016_54070 [Bacillus cereus 95/8201]
          Length = 181

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 78/193 (40%), Gaps = 21/193 (10%)

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
              E++  F     +    V +P   ++V  +          L++  + +   I+W K++
Sbjct: 1   MDDESFYEFLLTAYINMLEVSRPGAAIYVCHADSEGINFRKGLKDAGWLLKQCIIWAKNS 60

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            +       +Q  HE +++               A    N D +  + W           
Sbjct: 61  FVIGRSDYHWQ--HEPILYGWKPG----------AAHTWNSDRKQTTVWEFDKPL----- 103

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
             ++GE  HPT KP  + ++ + +S+  G+++ +PF GSG++   A++L R    +E   
Sbjct: 104 --RNGE--HPTMKPVGIPAKGIQNSSFKGNLVFEPFGGSGSTLIAAEQLNRICYIMEYDP 159

Query: 256 DYIDIATKRIASV 268
            Y D+  KR   +
Sbjct: 160 KYCDVIIKRWEEL 172


>gi|328545380|ref|YP_004305489.1| ParB domain protein nuclease [polymorphum gilvum SL003B-26A1]
 gi|326415122|gb|ADZ72185.1| ParB domain protein nuclease [Polymorphum gilvum SL003B-26A1]
          Length = 454

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 80/249 (32%), Gaps = 27/249 (10%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA-VTDSWDKFS 76
            +++ G+S     V   +  +   L   DPPY +  +G  +   +    A    +WD  S
Sbjct: 179 HRLLCGDSTSASDVRRLMNGERAILFATDPPYLVDYDGSNHPTRNKDWSASYGTTWDDSS 238

Query: 77  -SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
              E YD F  A +             +   +      +    +    ++   I+W K  
Sbjct: 239 QGAELYDGFIAAAVAEAIAEDA---AWYCWHASRRQAMLEACWEKAGAFVHQQIIWVKDR 295

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            +       +   HE        P                 +  + S W +P        
Sbjct: 296 GV--LTRSHYLWKHEPCFMGWRRPN----------RPPKVAEETLPSTWALP-------S 336

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
             KD    HPT KP       +      G +  +PF GSG+     +   R    +E+  
Sbjct: 337 FAKDDRPDHPTPKPLDAFGIPMRQHVARGGLCYEPFSGSGSQIMAGEANGRRVFAMEISP 396

Query: 256 DYIDIATKR 264
            Y+D+A +R
Sbjct: 397 AYVDVAVER 405


>gi|134288432|ref|YP_001110595.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134133082|gb|ABO59792.1| DNA methylase N-4/N-6 domain protein [Burkholderia vietnamiensis
           G4]
          Length = 409

 Score =  105 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 60/298 (20%), Positives = 98/298 (32%), Gaps = 70/298 (23%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           + GNS   +  L   S+  I   PPY L    Q                        Y  
Sbjct: 112 LFGNSEEAVGYLDDGSIQSIICSPPYPLLREKQYGNK----------------HVNEYLD 155

Query: 84  FTRAWLLACRRVLKPNGTL-------WVIGSYHNIFRIGTML----QNLNFWILNDIVWR 132
           +         + L  +G++       W  G  +       +L      L + +     W 
Sbjct: 156 WLLRIAEQWPKKLTADGSVVINLGDVWTAGEPYMSLYQERLLIRLEDELGWKLCQRYAWH 215

Query: 133 KSNPMPNF------RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR----- 181
               MP        R  R + + E + W +P+ +   Y  N + L   +E ++ R     
Sbjct: 216 NPAKMPAPAEWVTIRRVRVKPSLEQIYWLAPNGE--PYADNRNVLVPYSEAMRSRIAAGG 273

Query: 182 --------------------SDWLIPIC----------SGSERLRNKDGEKLHPTQKPEA 211
                               +   IP            S   R   + G  +HP + P  
Sbjct: 274 ETGGTRPSGHQLAAGAFDVDNGGAIPSSLLVAANTSSNSDYIRKCREQGLPVHPARFPAD 333

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           L    L  +T+ GD  LDPF GS  +GAVA+++ R +IGI+   +Y+     R  + +
Sbjct: 334 LPRHFLALTTREGDTCLDPFGGSLETGAVAEEMGRHWIGIDCNLEYLYGGANRFPNAR 391


>gi|297380548|gb|ADI35435.1| Modification methylase [Helicobacter pylori v225d]
          Length = 200

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 78/190 (41%), Gaps = 24/190 (12%)

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
               LK  G+ ++  +  N       L +     LN I W K +   N   +R+ +A E+
Sbjct: 1   MLPKLKDTGSFYIFNTPFNCALFLAYLCHKKVHFLNFITWVKKDGFAN-AKKRYNHAQES 59

Query: 152 LIWAS-----------------------PSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
           +++ S                          ++KG   N        +       W I  
Sbjct: 60  ILFYSMHKKNYTFNADEVRTAYESTERIKHAQSKGILKNNKRWFPNPKGKLCLDVWEITS 119

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
               E+   K  +  HP+ KP+AL+ R++ +S+   D+ILD F GSG +  VAK L R+F
Sbjct: 120 QRHVEKENGKILKPKHPSIKPKALIERMIKASSHKNDLILDLFSGSGMTSLVAKSLGRNF 179

Query: 249 IGIEMKQDYI 258
           IG E   +Y+
Sbjct: 180 IGCETHAEYV 189


>gi|308062650|gb|ADO04538.1| type IIS restriction enzyme M1 protein (mod) [Helicobacter pylori
           Cuz20]
          Length = 202

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 78/190 (41%), Gaps = 24/190 (12%)

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
               LK  G+ ++  +  N       L +     LN I W K +   N   +R+ +A E+
Sbjct: 1   MLPKLKDTGSFYIFNTPFNCALFLAYLHHKKVHFLNFITWVKKDGFAN-AKKRYNHAQES 59

Query: 152 LIWAS-----------------------PSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
           +++ S                          ++KG   N        +       W I  
Sbjct: 60  ILFYSMHKKNYTFNADEVRTAYESTERIKHAQSKGILKNNKRWFPNPKGKLCLDVWEITS 119

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
               E+   K  +  HP+ KP+AL+ R++ +S+   D+ILD F GSG +  VAK L R+F
Sbjct: 120 QRHVEKENGKILKPKHPSIKPKALIERMIKASSHKNDLILDLFSGSGMTSLVAKSLGRNF 179

Query: 249 IGIEMKQDYI 258
           IG E   +Y+
Sbjct: 180 IGCETHAEYV 189


>gi|45569523|ref|NP_996592.1| adenine DNA methyltransferase [Bordetella phage BMP-1]
          Length = 200

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 73/214 (34%), Gaps = 28/214 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDAVTDSW-----D 73
           ++I+G ++  L  +P++SVD +  DPPY       + +   PD     + +         
Sbjct: 7   QLIQGEALPALIAMPSESVDAVITDPPYSSGGFSRDDKAKDPDAKYTQSGSQGRYPTFSG 66

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                 +Y  +   W+  C RVLKP G       +  +  +   +Q    +    I W K
Sbjct: 67  DSRDQRSYLTWCSLWIAECVRVLKPGGYFMAFTDWRQLPLMSDAVQAGGVFWRGLIAWDK 126

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
                      F++  E ++W +                      Q+  D       G  
Sbjct: 127 GRGARAPHKGYFRHQCEYVVWGTKGAAV-----------------QLEHDGPFD---GCI 166

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
           +   +  +K H T KP AL+  ++      G   
Sbjct: 167 QAVVRRDDKHHLTGKPTALMRELVRPVMPGGGWC 200


>gi|224437622|ref|ZP_03658575.1| adenine-specific DNA methylase [Helicobacter cinaedi CCUG 18818]
 gi|313144074|ref|ZP_07806267.1| modification methylase HhaII [Helicobacter cinaedi CCUG 18818]
 gi|313129105|gb|EFR46722.1| modification methylase HhaII [Helicobacter cinaedi CCUG 18818]
          Length = 225

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 97/236 (41%), Gaps = 27/236 (11%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +  +  + + ++  L ++SVDL F DP Y   L+   Y  +            + +  + 
Sbjct: 16  NTKLNIDGLELMGSLESRSVDLCFFDPQYRGVLDKMRYGNEGERQKG------RSNLVQM 69

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGS-YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            +   ++++    RVLKP+  L +    +H    +   ++  +  +++ I W K   +  
Sbjct: 70  SETQIQSFICEIDRVLKPSCYLMLWIDKFHLCEGVKAWVKQTSLQVVDLITWDK---LKI 126

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
             G R +   E L+    +P     T+             +R  W   I +        D
Sbjct: 127 GMGYRTRRQSEYLLVLQKAPIKAKNTW---------RLHNIRDVWSEKIPN--------D 169

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
             K+HP  KP+ L   ++ S T  GD++LDP  GS +    AK+L R FIG  +  
Sbjct: 170 ELKIHPHSKPKGLQKALIESCTNKGDLVLDPASGSFSVFECAKELGREFIGTNLMP 225


>gi|161525446|ref|YP_001580458.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           multivorans ATCC 17616]
 gi|160342875|gb|ABX15961.1| DNA methylase N-4/N-6 domain protein [Burkholderia multivorans ATCC
           17616]
          Length = 403

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 82/261 (31%), Gaps = 36/261 (13%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           L  +   L+F  PPY  Q               V D WD         A  RA L    +
Sbjct: 125 LDGERAHLLFTSPPYANQREYTT--------GGVAD-WDVLMQGVFGTA--RAALRDEAQ 173

Query: 95  VLKPNGTLWVIGSYHNIFR-IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           VL   G +     +   +      ++   +      VW +S  +P     R    HE + 
Sbjct: 174 VLVNLGLVHRDNEWQPYWDGWIEWMRTQGWRRFGWYVWDQSVTVPGDWAGRLAPRHEFVF 233

Query: 154 WA------------SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE-------- 193
                               + +     +  A         +W        E        
Sbjct: 234 HFNRQARKPNKIVPCKWAGHETHLRADGSSTAMRGKDGKVGEWNHAGTPTQEFRIPDSVV 293

Query: 194 ---RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
              R R + G+ + HP   P  L    + + +   +I+ +PF GSGT+    +   R   
Sbjct: 294 EVTRQRGRIGDGIDHPAVFPLGLPKFFIEAYSDEAEIVFEPFSGSGTTLLAGQLTGRKVR 353

Query: 250 GIEMKQDYIDIATKRIASVQP 270
            IE+  +Y+D+A +R     P
Sbjct: 354 AIELAPEYVDVALRRWLQHHP 374


>gi|170766101|ref|ZP_02900912.1| hypothetical adenine-specific methylase YhdJ [Escherichia albertii
           TW07627]
 gi|170125247|gb|EDS94178.1| hypothetical adenine-specific methylase YhdJ [Escherichia albertii
           TW07627]
          Length = 106

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/86 (45%), Positives = 56/86 (65%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           D  + HPTQKPEALL RI+++S+ PGD++LDPF GS T+GAVA    R FIGIE+  +YI
Sbjct: 2   DEYENHPTQKPEALLQRIILASSNPGDVVLDPFAGSFTTGAVAIATGRKFIGIEINNEYI 61

Query: 259 DIATKRIASVQPLGNIELTVLTGKRT 284
            +  +R+         +L  +  ++T
Sbjct: 62  KMGLRRLNISSHYSVKDLAKVKKRKT 87


>gi|332653909|ref|ZP_08419653.1| DNA methylase N-4/N-6 [Ruminococcaceae bacterium D16]
 gi|332516995|gb|EGJ46600.1| DNA methylase N-4/N-6 [Ruminococcaceae bacterium D16]
          Length = 575

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 100/237 (42%), Gaps = 15/237 (6%)

Query: 65  VDAVTDSWDKFSSFEAYDAFTRAWLLACRRV------LKPNGTLWVIGSYHNIFRIGTML 118
           V+   ++ D F+  +AY+A     +   ++V      L     + + G + +  +   + 
Sbjct: 339 VEGFNNNKDHFN--DAYEAILDYMVGEAQKVGLKAKQLTEITGVQMWGHWFSKSQFTPIP 396

Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
           +     +      R    +P+ +  + +N       +  +   +   F  +    ++E  
Sbjct: 397 EWHYKKLQQAFKGRA-FSLPHDQVMKLRNKPSEAYQSMKAEAMELRAFFDNTHNDSDEHD 455

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
            M   W  PI + +ER    D    H T KP AL  R ++SS++PG++++D F GSG++ 
Sbjct: 456 IMTDVWRFPITNTAER----DDAGGHATPKPIALCERAILSSSRPGELVVDFFGGSGSTL 511

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
              +   R+   IE++  + D+  +R   ++  G+  +  +   R  PR     + E
Sbjct: 512 IACENTGRTCAMIELEPKWCDVIVRRY--IKTTGDNNVRCVRQGRELPREEIATIFE 566



 Score = 59.6 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 16/89 (17%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            ++  G+S+    V +    +  DL+F DPPY +       + D+   +           
Sbjct: 204 HRLYCGDSLKMGDVQKATDGQRADLVFTDPPYGMGKESDGVQNDNQNQN----------- 252

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
                 F + W+     +LK NG+ +  G
Sbjct: 253 --DLLEFNKKWIALSFSILKENGSWYCWG 279


>gi|294084850|ref|YP_003551610.1| DNA methylase N-4/N-6 domain-containing protein [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292664425|gb|ADE39526.1| DNA methylase N-4/N-6 domain protein [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 754

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 71/352 (20%), Positives = 118/352 (33%), Gaps = 109/352 (30%)

Query: 19  WKDKIIKGNSISVLEKLPAK----------SVDLIFADPPYNLQLNGQLYRPDHSLV--- 65
           W +K+I G++  +L  L              + LI+ DPP+++  +  +       +   
Sbjct: 87  WTNKLIWGDNKFILSSLKNGPLREEIEANGGIKLIYIDPPFDVGADFTMGVEIGEEIFEK 146

Query: 66  -------DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL---------------- 102
                   A  D+W K    +++ +     L+  + +L P+G +                
Sbjct: 147 ESNVLEEIAYRDTWGK--GQDSFISMLYERLILLKDLLAPDGAIYVHCDYRVSAYVRLIL 204

Query: 103 --------------------------WVIGSYHNIF----RIGTMLQNLNFWILNDIVWR 132
                                     + I   H  F        +  +      +  V R
Sbjct: 205 SEIFGEGSFRNQIIWKRTSAHNDPARYGIIDDHIYFFSKSATDWIWTDHRTEYQDWYVER 264

Query: 133 KSNPMPNFRGRRFQN-------------AHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
                    G+RF +              +E      P  +   YT +        E + 
Sbjct: 265 YYRYQDEKTGKRFLSRDVTAPSHGSDAGVYEWKGKYPPKGRMWAYTKDKMKQMDEAERLF 324

Query: 180 MR----------------------SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
                                    D ++PI S S      D    +PTQKPEAL+ RI+
Sbjct: 325 YTSNGIPRLKQYLDEMDGASIQTIWDDILPIVSWS------DERSGYPTQKPEALVDRII 378

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            +ST   DI+ D F GSGT+ AVA+KL R +I  ++ +  I  A KR+  VQ
Sbjct: 379 QASTNEDDIVCDFFIGSGTTAAVAEKLGRKWICSDLGKFSIHTARKRLIGVQ 430


>gi|283956294|ref|ZP_06373774.1| site-specific DNA-methyltransferase [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283792014|gb|EFC30803.1| site-specific DNA-methyltransferase [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 250

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 89/240 (37%), Gaps = 36/240 (15%)

Query: 39  SVDLIFADPPYNLQLNGQLYRPDH------------SLVDAVTDSWDKFSSFEAYDAFTR 86
              L+ AD PYNL  N     P+                 A  D+ + F   E     ++
Sbjct: 20  KAQLVIADIPYNLGNNAYASSPEWYINGDNKNGESKKANKAFFDTDNDFRVSEFMHFCSK 79

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF- 145
             +   +   K    +    S+     +  + +   F    ++V+RK +     +     
Sbjct: 80  MLIKEPKECGKSPCMIV-FCSFEQQAMLIEVAKKYGFNHYINLVFRKQSSSKVLKANMKI 138

Query: 146 --QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
                +  +++    P      FN D     N       DW           +++   K+
Sbjct: 139 VGNCEYALILYREKLP-----KFNNDGKMIYN-----CMDWQ----------KDEGIPKV 178

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPTQKP  LL R++   T  GD+++DP  GSG++   A  L R   G E+K+D+   A +
Sbjct: 179 HPTQKPIKLLERLISIFTDAGDVVIDPCAGSGSTLLAATNLNRKAYGFEIKKDFFKSANE 238


>gi|167462734|ref|ZP_02327823.1| hypothetical protein Plarl_09255 [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322382813|ref|ZP_08056656.1| adenine-specific DNA methylase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321153196|gb|EFX45643.1| adenine-specific DNA methylase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 247

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/263 (20%), Positives = 107/263 (40%), Gaps = 40/263 (15%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++II  +   +  ++P  SVD+I  D PY                +   + WD     + 
Sbjct: 6   NQIIHADCFDIFPEIPDGSVDMILCDLPY----------------ETTQNEWDVGLPLDL 49

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                       +R++K NG + +  +    F     + N+N  +  + +W K+NP    
Sbjct: 50  L-------WSHYKRIIKQNGAILL--TAQPPFDKVLGMSNINM-LRYEWIWVKNNPTGFL 99

Query: 141 RGRRFQ-NAHETLIWASP-----SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
              +    +HE ++         +P+        +  K  + D     +  + I  G + 
Sbjct: 100 NANKMPLKSHENILVFYRRLPTYNPQKTQGHPPVNHYKKLSSDGSNYGNTKVGIEGGGQT 159

Query: 195 --------LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                      +D ++ HPTQKP AL   ++ + T  G +++D   G  T+   A K +R
Sbjct: 160 DRFPTDVLYFQRDQKRFHPTQKPVALFEYLIKTYTNEGALVVDNCAGVATTAVAAIKNKR 219

Query: 247 SFIGIEMKQDYIDIATKRIASVQ 269
           +FI IE ++ ++ I  +R+ +VQ
Sbjct: 220 NFIAIEKEEKWVKIGKQRLQNVQ 242


>gi|329122242|ref|ZP_08250832.1| site-specific DNA-methyltransferase [Haemophilus aegyptius ATCC
           11116]
 gi|327473915|gb|EGF19329.1| site-specific DNA-methyltransferase [Haemophilus aegyptius ATCC
           11116]
          Length = 245

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 95/242 (39%), Gaps = 28/242 (11%)

Query: 39  SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD--------AFTRAWLL 90
              L+ AD PYNL  N     P+  +     +     ++   +D         F      
Sbjct: 20  KAQLVIADIPYNLGNNAYASNPEWYVNGDNKNGESDKANSSFFDTDKDFRIAEFMHFCSK 79

Query: 91  ACRRVLKPNG---TLWVIGSYHNIFRIGTMLQNLNFWILNDIVW-RKSNPMPNFRGRRFQ 146
              +  K  G    + V  ++  I  +    +   F     +V+ + S+P       +  
Sbjct: 80  MLIKEPKERGKAPCMIVFCAFQQIPMVIDYAKQHGFKNHIPLVFIKSSSPQVLKANMKVV 139

Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
            A E  +        K            N + +M  +W        E+   K+  KLHPT
Sbjct: 140 GATEYALILYRDKLPK-----------FNNNGKMIKNWFE-----WEKDNRKEIPKLHPT 183

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           QKP A+L R++   T  GD+++DP  GS ++   A++L R   G E+K+D   IA +++ 
Sbjct: 184 QKPIAVLKRLIEIFTDEGDVVIDPVAGSASTLRAARELNRPSYGFEIKKDSCKIAKEQML 243

Query: 267 SV 268
           ++
Sbjct: 244 NI 245


>gi|330993445|ref|ZP_08317380.1| Modification methylase MjaV [Gluconacetobacter sp. SXCC-1]
 gi|329759475|gb|EGG75984.1| Modification methylase MjaV [Gluconacetobacter sp. SXCC-1]
          Length = 259

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 83/232 (35%), Gaps = 41/232 (17%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           + A SVD++   PPYN+ L  + YR                   + Y  +        RR
Sbjct: 1   MEAASVDVVVTSPPYNIGLKYRTYR--------------DRLEEDGYLDWMVEVAAEVRR 46

Query: 95  VLKPNGTLWVI--GSYHNIF---------RIGTMLQNLNFWILNDIVWRKSNP--MPNFR 141
           V++P+G+ ++   GS    +         R   +LQN   W+ +  V   ++    P   
Sbjct: 47  VMRPDGSFFLNVAGSSAQPWLPFELMVRLRELFVLQNHISWVKSISVGVDTHGHFKPVNS 106

Query: 142 GRRFQNAHETLIWA--------SPSPKAKGYTFN-YDALKAANEDVQMRSD-WLIPICSG 191
            R     HE L                   Y        +   +D + R D W IP    
Sbjct: 107 HRYLNRNHEHLFHLTLKGEVGLKRLDIGVPYKDKSNIVRRGHRQDRRCRGDTWFIPY--- 163

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
            E ++ +  +  HP   P  L    +    K   ++LDPF G+GT+   A +
Sbjct: 164 -ETVQGRAQKFHHPGTFPVLLPQMCIRLHGKSAPVVLDPFMGTGTTLVAAVR 214


>gi|28199526|ref|NP_779840.1| DNA modification methylase [Xylella fastidiosa Temecula1]
 gi|28057641|gb|AAO29489.1| DNA modification methylase [Xylella fastidiosa Temecula1]
 gi|307578535|gb|ADN62504.1| DNA modification methylase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 174

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 74/199 (37%), Gaps = 32/199 (16%)

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL-----NDIV 130
              + Y  + R  L    R+L+ +G ++    Y++ +R+   L      I+       I+
Sbjct: 1   MPHDEYVRWQRDCLTEMMRLLRNDGAIF----YNHKWRVQAGLLQDRTDIVTGFPVRQII 56

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
             + N   NF    F   +E +   +          N                W IP   
Sbjct: 57  IWQRNGGINFNSGYFLPTYEVIYLIAKPDFKLKPKANAIGD-----------VWTIP--- 102

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
                  ++ +  HP   P  L  R + S       +LDPF GSGT    A+ L   ++G
Sbjct: 103 -------QESKNPHPAPFPVELAQRCIESVGAEP--VLDPFMGSGTIAVAAEILGYDWVG 153

Query: 251 IEMKQDYIDIATKRIASVQ 269
           IE    Y++++  R+ S++
Sbjct: 154 IEKSPKYVEMSLDRLKSLK 172


>gi|261840056|gb|ACX99821.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter pylori
           52]
          Length = 72

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/62 (54%), Positives = 45/62 (72%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPTQK  AL+ +I+   T P DI+LDPF GSGT+G   K+L R+FIGIE +++Y  IA K
Sbjct: 8   HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLERNFIGIESEKEYFQIAKK 67

Query: 264 RI 265
           R+
Sbjct: 68  RL 69


>gi|226947209|ref|YP_002802282.1| adenine specific DNA methylase N-4/N-6 [Azotobacter vinelandii DJ]
 gi|226722136|gb|ACO81307.1| adenine specific DNA methylase N-4/N-6 [Azotobacter vinelandii DJ]
          Length = 560

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 68/333 (20%), Positives = 113/333 (33%), Gaps = 78/333 (23%)

Query: 12  NQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD------- 61
           ++N  F+  +++I G+++  L+ L    +  V  +F DPPYN       Y          
Sbjct: 39  SENDFFD--NQLIFGDNLLALKALEQEFSGKVKCVFIDPPYNTGSAFTHYDDGLEHSIWL 96

Query: 62  ----------HSLVDAVTDSWDKFSSFEAY-------DAFTRAWLLA---CRRVLKPNGT 101
                       L+      W      E +       + F R   ++     +   P  +
Sbjct: 97  GLMRDRLEIIKRLLSDDGSLWITIDDNECHYLKVLCDEVFGRNNFVSNLIWEKADSPRNS 156

Query: 102 LWVIGSYHNIFRIG--------TMLQN---------------LNFWILNDIVWRKSNPMP 138
                + H+   I           LQ                   W+  D    K     
Sbjct: 157 ARQFSTDHDHILIFSKNPDWIPKKLQRTEQANSIYSNPDNDPRGPWLPGDPYANKPYSKG 216

Query: 139 NFR-------------GRRFQNAHETL--------IWASPSPKAKGYTFNYDALKA--AN 175
            +              GR ++ + E L        IW  P+  A+     Y +       
Sbjct: 217 QYTVTGPTGRDFSPPPGRYWRISEEKLQELNTDGRIWWGPNGSARPSIKRYLSEVGDLVP 276

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
             +  + D      S +E      G+    T KPE L+ R+L  +T PGD++LD F GSG
Sbjct: 277 RTLWSKEDVGSNRTSKNEMRLLFPGDSSFDTPKPERLIERVLNIATSPGDLVLDSFAGSG 336

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           T+GAVA K+ R +I +E+ +        R+  V
Sbjct: 337 TTGAVAHKMGRRWIMVELGEHCHTHIIPRLKKV 369


>gi|163849167|ref|YP_001637211.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222527144|ref|YP_002571615.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus sp.
           Y-400-fl]
 gi|163670456|gb|ABY36822.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222451023|gb|ACM55289.1| DNA methylase N-4/N-6 domain protein [Chloroflexus sp. Y-400-fl]
          Length = 314

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/282 (19%), Positives = 104/282 (36%), Gaps = 36/282 (12%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNL------------QLNGQLYRPDHSLVDAVTD 70
           +I  +    L ++P  S+  I  DPPY +              NG ++R   S       
Sbjct: 24  VIHADCFEWLSEVPGDSIHAIVTDPPYGVKEYDPEQLEKRSNGNGGIWRIPPSFDGHTRS 83

Query: 71  SWDKFSSF-----EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
              +F++      E    +   W     RVL+P G +++  +      + T +    F  
Sbjct: 84  PLPRFTALNPKERERIQHYFYEWARLALRVLRPGGHVFLASNVFLSQIVFTAIVQAGFEF 143

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETL---------------IWASPSPKAKGYTFNYDA 170
              +V           G R +NA E                 I+  P P     +     
Sbjct: 144 RGQVVRLVRTLRG---GDRPKNAEEEFPDVCSMPRGCYEPWGIFRKPIPDGMTVSECLRL 200

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK-PGDIILD 229
            +      +   +    +       + +     HP+ KP++ L +I+ +S      ++LD
Sbjct: 201 FQTGGLRRKQDGNPFEDVIESERTPQKERAIANHPSLKPQSFLRQIVYASLPLGEGVVLD 260

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           PF GSG++ A A+ +  + IGIE  ++Y  ++ + I ++  L
Sbjct: 261 PFMGSGSTIAAAEAIGYAAIGIEKYREYYLMSLQSIPALSSL 302


>gi|209963444|ref|YP_002296359.1| type III restriction-modification system methyltransferase,
           putative [Rhodospirillum centenum SW]
 gi|209956910|gb|ACI97546.1| type III restriction-modification system methyltransferase,
           putative [Rhodospirillum centenum SW]
          Length = 554

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/324 (17%), Positives = 102/324 (31%), Gaps = 74/324 (22%)

Query: 19  WKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD-------------- 61
           + +++I G+++  L+ L    A  V  +F DPPYN     + Y                 
Sbjct: 45  FDNRLIFGDNLLALKALEQEFAGKVKCVFIDPPYNTGSAFEHYEDGVEHSLWLSLMRDRL 104

Query: 62  ---HSLVDAVTDSWDKFSSFEAY------------------DAFTRAWLLACRRVL---K 97
                ++      W      EA+                    + +      R  +    
Sbjct: 105 EIIRRMLSDDGSLWITIDDNEAHYLKILLDEVFGRSSFIANIVWQKRTSRENRAAIGSAH 164

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR--GRRFQNAHET---- 151
            +  ++          +   L +   +   D   +       F   G R    ++     
Sbjct: 165 DHILIYAPSGPQRWKDVRNRLGDEGSYSNPDNDTKGPWRSIPFSAQGYRANQMYDIETPS 224

Query: 152 ---------LIWASPSPKAKGYTFNYDALKAANEDVQMRSD-------------WLIPIC 189
                      W +  P  K +  +           + R               W     
Sbjct: 225 GEIVKPPAGRCWGATEPVFKKHLADGRVYFPNGGTGRPRIKQYKGEEVGLAPMTWWDAAF 284

Query: 190 SGSERLRNKD-----GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           +G  +   K+      + +  T KPE LL  ++  +T PGD++LD F GSGT+GAVA K+
Sbjct: 285 AGDNQAAKKEILGLFDDDIFGTPKPEKLLMNVIHIATNPGDLVLDSFAGSGTTGAVAHKM 344

Query: 245 RRSFIGIEMKQDYIDIATKRIASV 268
            R +I +E+ +        R+  V
Sbjct: 345 GRRWIMVELGEHCHTHIIPRLKKV 368


>gi|308185115|ref|YP_003929248.1| type IIS restriction enzyme R protein (MBOIIR) [Helicobacter pylori
           SJM180]
 gi|308061035|gb|ADO02931.1| type IIS restriction enzyme R protein (MBOIIR) [Helicobacter pylori
           SJM180]
          Length = 587

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 85/225 (37%), Gaps = 24/225 (10%)

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
               +K  G+ ++  +  N       L+      LN I W K +   N   +R+ +A E+
Sbjct: 1   MLPKIKDTGSFYIFNTPFNCALFLAYLRQKKAHFLNFITWVKKDGFAN-AKKRYNHAQES 59

Query: 152 LIWAS-----------------------PSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
           +++ S                          ++KG   N        +       W I  
Sbjct: 60  ILFYSMHKKNYTFNADEVRTAYESTERIKHAQSKGILKNNKRWFPNPKGKLCLDVWEITS 119

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
               E+   K  +  HP+ KP+AL+ R++ +S+   D+ILD F GSG    VAK L R+F
Sbjct: 120 QRHVEKENGKILKPKHPSIKPKALIERMIKASSNENDLILDLFSGSGMISLVAKSLGRNF 179

Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
           IG E   +Y+    +     +             +T  +  FN +
Sbjct: 180 IGCETHVEYVHEGLEMFKYNEYKSQHNRYDQNKIKTIIQAIFNEV 224


>gi|32266743|ref|NP_860775.1| adenine-specific DNA methylase [Helicobacter hepaticus ATCC 51449]
 gi|32262794|gb|AAP77841.1| adenine-specific DNA methylase [Helicobacter hepaticus ATCC 51449]
          Length = 227

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 64/240 (26%), Positives = 97/240 (40%), Gaps = 30/240 (12%)

Query: 12  NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
            +  +F  + KI   + + +L  + ++S+DL F DP Y   L+   Y  +        + 
Sbjct: 14  REKKLFNTRLKI---DGLELLSMIESQSIDLCFFDPQYRGVLDKMKYGNEGERQRGRANL 70

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS-YHNIFRIGTMLQNLNFWILNDIV 130
                S E    F    L    RVLK +  L +    +H    I   L+N N  I++ I 
Sbjct: 71  M--QMSEENIIHF----LQEIARVLKLSKYLMLWIDKFHLCEGIHQWLKNTNLQIVDLIT 124

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           W K        G R +   E L+     P     T+         E   +R  W   I S
Sbjct: 125 WDKQK---MGMGYRTRRQSEYLLILQKKPLKAKGTW---------ERKNIRDIWSEKIPS 172

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
                   D  K+HP  KP+ L S ++ S TK G+++LDP  GS +     ++L R FIG
Sbjct: 173 --------DSIKIHPHTKPKGLQSALIESCTKVGEVVLDPASGSFSVLECCRELNRHFIG 224


>gi|57238157|ref|YP_179407.1| site-specific DNA-methyltransferase [Campylobacter jejuni RM1221]
 gi|88596378|ref|ZP_01099615.1| site-specific DNA-methyltransferase [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|57166961|gb|AAW35740.1| site-specific DNA-methyltransferase [Campylobacter jejuni RM1221]
 gi|88191219|gb|EAQ95191.1| site-specific DNA-methyltransferase [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|315058718|gb|ADT73047.1| Adenine-specific methyltransferase [Campylobacter jejuni subsp.
           jejuni S3]
 gi|315927088|gb|EFV06439.1| DNA methylase family protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 251

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 89/240 (37%), Gaps = 36/240 (15%)

Query: 39  SVDLIFADPPYNLQLNGQLYRPDH------------SLVDAVTDSWDKFSSFEAYDAFTR 86
              L+ AD PYNL  N     P+                 A  D+ + F   E     ++
Sbjct: 21  KAQLVIADIPYNLGNNAYASSPEWYINGDNKNGESKKANKAFFDTDNDFRVSEFMHFCSK 80

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF- 145
             +   +   K    +    S+     +  + +   F    ++V+RK +     +     
Sbjct: 81  MLIKEPKECGKSPCMIV-FCSFEQQTMLIEVAKKYGFNHYINLVFRKQSSSQVLKANMKI 139

Query: 146 --QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
                +  +++    P      FN D     N       DW           +++   K+
Sbjct: 140 VGNCEYALILYREKLP-----KFNNDGKMIYN-----CMDWQ----------KDEGIPKV 179

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPTQKP  LL R++   T  GD+++DP  GSG++   A  L R   G E+K+D+   A +
Sbjct: 180 HPTQKPVKLLERLITIFTDAGDVVIDPCAGSGSTLLAATNLNRKAYGFEIKKDFFKSANE 239


>gi|289764488|ref|ZP_06523866.1| DNA methylase N-4/N-6 [Fusobacterium sp. D11]
 gi|289716043|gb|EFD80055.1| DNA methylase N-4/N-6 [Fusobacterium sp. D11]
          Length = 395

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 64/282 (22%), Positives = 105/282 (37%), Gaps = 66/282 (23%)

Query: 37  AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
              V  I+ DPPYN   +   Y              D F +   +  F +  L   +++L
Sbjct: 5   GGGVKCIYIDPPYNTGSDSFNY-------------NDNF-NHSTWLTFMKNRLELAKKLL 50

Query: 97  KPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSN--PMPNFRGRRFQNAHETL 152
             +G++++   Y+ +     ++ ++        +I+WR               +N H+T+
Sbjct: 51  TDDGSIFINLDYNEVHYCKVLMDDIFGRENFQREIIWRIGWVSGYKTSVNNYIRN-HDTI 109

Query: 153 IWASPSP---KAKGYTFNYDALKAANEDVQMR-----------SDWLIPICSGSERLRNK 198
           ++ S +      K Y  N +      +D                D L+ I +   R    
Sbjct: 110 LFYSKNKEFYFNKQYILNSEFKNLVKKDKVKSEFEKLNIDDDLQDKLLNIINYKTRPERY 169

Query: 199 DGEKLHPT-------------------------------QKPEALLSRILVSSTKPGDII 227
             E +                                  QK E L+ RI+ +ST  GD I
Sbjct: 170 PLEDVWNANEYDDLNSIAIVSYSGESVSKMLKIENDIKGQKSEKLIERIIKNSTMEGDTI 229

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI-DIATKRIASV 268
           LD   GSGT+ AVA K+ R +IGIE + DYI DI  +R+  V
Sbjct: 230 LDFHLGSGTTAAVAHKMGRRYIGIE-QMDYIEDIVVERLKKV 270


>gi|168181366|ref|ZP_02616030.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum Bf]
 gi|168184214|ref|ZP_02618878.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum Bf]
 gi|182672690|gb|EDT84651.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum Bf]
 gi|182675431|gb|EDT87392.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum Bf]
          Length = 268

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 88/242 (36%), Gaps = 28/242 (11%)

Query: 39  SVDLIFADPPYNLQLN-----------GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT-R 86
              L+ AD PYN+  N           G     +         + D+  +   Y  F  R
Sbjct: 26  KAQLVIADIPYNIGKNAYGSNPEWYIGGNNKNGESKKAGKTFFNTDENFNIAEYFHFCNR 85

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF- 145
             +   +   K    +    S+  I  +    +   F     + + K+      +     
Sbjct: 86  LLIKEPKERGKAPAMIV-FCSFEQIPTVIEYGKKHGFKNSYPLFFIKNYSAQVLKANMKI 144

Query: 146 --QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
                H  +++    PK      N        + +    +W        +R   K+  K+
Sbjct: 145 VGATEHAVVLYRDKLPKFN----NGKKETGKGKMIFNWFEW--------KRDSKKEYPKV 192

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPTQKP ALL +++   T  GD+++DP  G G++     +L RS  G E+ +++   A +
Sbjct: 193 HPTQKPIALLKQLIEIFTDEGDVVIDPVAGGGSTLRACMELNRSSYGFEVSKEFYKKAQE 252

Query: 264 RI 265
           ++
Sbjct: 253 QM 254


>gi|317134067|ref|YP_004089978.1| DNA methylase N-4/N-6 domain protein [Ruminococcus albus 7]
 gi|315450529|gb|ADU24092.1| DNA methylase N-4/N-6 domain protein [Ruminococcus albus 7]
          Length = 317

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 95/250 (38%), Gaps = 24/250 (9%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +I+G+    L      S D I  D P              S   A       F+ +E + 
Sbjct: 73  LIEGDGRD-LSVFSNDSFDCIITDHP-------------WSDEKANKGGNRSFADYETF- 117

Query: 83  AFTRAWLLACRRVLKPNGTLWVI------GSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            +T        RVLK    L  +       +Y  +++I  M +   F     + W K   
Sbjct: 118 RYTPDDFKEKARVLKDGCFLVEMIPAENESNYEYLYQIKKMAEAAGFQYYAKVPWTKGTF 177

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           + N  GR+ +N  + +I++    ++       D      +     ++ ++P     +   
Sbjct: 178 VGN-TGRKAKNQEDMMIFSLGKARSMRPDAKKDKADPTVKHYMSGANGMLPTNFNVQPPD 236

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
            K   ++H  +KP  L+ +IL   T  G+I+LD F GSG  G      +R  + IE  ++
Sbjct: 237 KKS--RIHQAEKPMGLVEQILDYLTFEGEIVLDQFAGSGVVGEACINKKRGCVLIEKSKE 294

Query: 257 YIDIATKRIA 266
            I    +R+ 
Sbjct: 295 CIKKIIQRLG 304


>gi|240850618|ref|YP_002972018.1| adenine specific DNA methylase Mod [Bartonella grahamii as4aup]
 gi|240267741|gb|ACS51329.1| adenine specific DNA methylase Mod [Bartonella grahamii as4aup]
          Length = 546

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 69/329 (20%), Positives = 113/329 (34%), Gaps = 81/329 (24%)

Query: 19  WKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPD-------------- 61
           + +K+I G+++  L+ L  +    V  I+ DPPYN     + Y                 
Sbjct: 46  FDNKLIFGDNLLTLKALEQEYMGKVKCIYIDPPYNTGNAFEHYEDGLEHSLWLSLMRDRL 105

Query: 62  ---HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR-RVLKPNGTLWV----------IGS 107
              H L+      W      E   A+ +  +     R    N  +W             S
Sbjct: 106 ELLHHLLADDGSIWISIDDDEQ--AYLKVMMDEIFGRQNFINNIIWQKKYAPQNDTKWLS 163

Query: 108 YHNIFRIGTMLQNLNFW-----ILNDIVWRKSNPMPNFRGRRF-----------QNAHET 151
            ++ F +      + +        +D+  R  NP  + RG              ++ +E 
Sbjct: 164 DNHDFIMVYAKDKMFWRPQLLPRSSDMDARYKNPDNDPRGPWKSGDLSVKRVTLKDIYEI 223

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP-----------------------I 188
           +  +                K   E ++    W  P                       I
Sbjct: 224 ITPSGRKVMPPNGRSWAMNEKKFFELLKDNRIWFGPTGSNVPSLKRFLSEVKNGTVSMTI 283

Query: 189 CSGSERLRNKDGEK---------LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
              +E   N+D +K         +  T KPE L+ RI+  +T PGD+ILD F GSGT+GA
Sbjct: 284 WPYTEVGHNQDAKKEVKVFNSDNVFTTPKPERLMERIIQLATNPGDLILDSFAGSGTTGA 343

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           VA K+ R +I IE+ +        R+  V
Sbjct: 344 VAHKMGRKWIMIELGEHCHTHIIPRLKQV 372


>gi|68249856|ref|YP_248968.1| modification methylase DpnIIB-like [Haemophilus influenzae
           86-028NP]
 gi|145629790|ref|ZP_01785584.1| modification methylase DpnIIB-like protein [Haemophilus influenzae
           22.1-21]
 gi|229844468|ref|ZP_04464608.1| modification methylase DpnIIB-like protein [Haemophilus influenzae
           6P18H1]
 gi|68058055|gb|AAX88308.1| modification methylase DpnIIB-like [Haemophilus influenzae
           86-028NP]
 gi|144977936|gb|EDJ87724.1| modification methylase DpnIIB-like protein [Haemophilus influenzae
           22.1-21]
 gi|229812717|gb|EEP48406.1| modification methylase DpnIIB-like protein [Haemophilus influenzae
           6P18H1]
          Length = 245

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 95/242 (39%), Gaps = 28/242 (11%)

Query: 39  SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD--------AFTRAWLL 90
              L+ AD PYNL  N     P+  +     +     ++   +D         F      
Sbjct: 20  KAQLVIADIPYNLGNNAYASNPEWYVNGDNKNGESDKANSSFFDTDKDFRIAEFMHFCSK 79

Query: 91  ACRRVLKPNG---TLWVIGSYHNIFRIGTMLQNLNFWILNDIVW-RKSNPMPNFRGRRFQ 146
              +  K  G    + V  ++  I  +    +   F     +V+ + S+P       +  
Sbjct: 80  MLIKEPKERGKAPCMIVFCAFQQISMVIDYAKQHGFKNHIPLVFIKSSSPQVLKANMKVV 139

Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
            A E  +        K            N + +M  +W        E+   K+  KLHPT
Sbjct: 140 GATEYALILYRDKLPK-----------FNNNGKMIKNWFE-----WEKDNRKEIPKLHPT 183

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           QKP A+L R++   T  GD+++DP  GS ++   A++L R   G E+K+D   IA +++ 
Sbjct: 184 QKPIAVLKRLIEIFTDEGDVVIDPVAGSASTLRAARELNRPSYGFEIKKDSCKIAKEKML 243

Query: 267 SV 268
           ++
Sbjct: 244 NI 245


>gi|317181064|dbj|BAJ58850.1| fusion protein of dpnA and hopN [Helicobacter pylori F32]
          Length = 95

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/62 (54%), Positives = 46/62 (74%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPTQK  AL+ +I+   T P DI+LDPF GSGT+G   K+L+R+FIGIE +++Y  IA K
Sbjct: 31  HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLKRNFIGIESEKEYFQIAKK 90

Query: 264 RI 265
           R+
Sbjct: 91  RL 92


>gi|257091062|ref|ZP_05585423.1| DNA modification methylase [Enterococcus faecalis CH188]
 gi|256999874|gb|EEU86394.1| DNA modification methylase [Enterococcus faecalis CH188]
          Length = 254

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 99/246 (40%), Gaps = 30/246 (12%)

Query: 39  SVDLIFADPPYNLQLNGQLYRP----DHSLVDAVTDSWDK--FSSFEAYD--AFTRAWLL 90
              L+ AD PYNL  N             + +  +D  +K  F + E +    F      
Sbjct: 24  KAQLVIADIPYNLGKNAYASSSAWYEGGKIENGESDKANKSFFDTDENFRISEFMHFCSK 83

Query: 91  ACRRVLKPNG---TLWVIGSYHNIFRIGTMLQNLNFWILNDIVW-RKSNPMPNFRGRRFQ 146
             ++  K  G    + V  ++  +  +    +   F     +V+ +KS+P       +  
Sbjct: 84  MLKKEPKEVGKAPAMIVFCAFQQLQMVIDYGKKYGFNNHIPLVFIKKSSPQVLKANMKVV 143

Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
            A E  +        K            N D +M  +W        E   +    K+HPT
Sbjct: 144 GATEYALVLYREKLPK-----------FNNDGRMVLNWF-------EWETDNSYPKIHPT 185

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           QKP  ++ R++   T  GD+++DP  GSG++   A +L R+  G E+K++  + + +++ 
Sbjct: 186 QKPIPVIKRLIEIFTDYGDVVIDPCAGSGSTLRAAAELNRNAYGFEIKKEMYEASQEKML 245

Query: 267 SVQPLG 272
           S  P+G
Sbjct: 246 SNIPMG 251


>gi|53793641|ref|YP_112541.1| modification methylase [Flavobacterium phage 11b]
 gi|53748231|emb|CAH56692.1| modification methylase [Flavobacterium phage 11b]
          Length = 216

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 86/250 (34%), Gaps = 53/250 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQL----YRPDHSLVDAVTDSWDKFSS 77
           +I   +++ ++ + P    DL   DPPY ++  GQ       P H         WD    
Sbjct: 8   EITNEDNMLLMARYPDNYFDLAIVDPPYGIERGGQTETFTKNPKHKRKLHQQKDWDNSIP 67

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            + Y            RV K                             N I+W  +  +
Sbjct: 68  TKDY-------FNELFRVSK-----------------------------NQIIWGANYFV 91

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
            +         H ++ W       +G T +   +  ++     R        + +  L  
Sbjct: 92  KHLN-------HSSMGWIFWFKGQEGLTMSDGEIAYSSFQKATRQ------ININRGLIA 138

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           + G  +HPTQKPE L   +L +  K GD ILD   GSG+        +      E+ ++Y
Sbjct: 139 QKGGSIHPTQKPEKLYRWLLENYAKEGDKILDTHLGSGSIAIACHDYKFDLTACELDKEY 198

Query: 258 IDIATKRIAS 267
            D A KRI +
Sbjct: 199 YDAAVKRITN 208


>gi|217033239|ref|ZP_03438675.1| hypothetical protein HPB128_189g1 [Helicobacter pylori B128]
 gi|298737066|ref|YP_003729596.1| adenine DNA methyltransferase protein [Helicobacter pylori B8]
 gi|216945027|gb|EEC23755.1| hypothetical protein HPB128_189g1 [Helicobacter pylori B128]
 gi|298356260|emb|CBI67132.1| adenine DNA methyltransferase protein [Helicobacter pylori B8]
          Length = 80

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/79 (46%), Positives = 49/79 (62%), Gaps = 7/79 (8%)

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P+ SG E+ +       HPTQK  AL+ +I+   T P DI+LDPF GSGT+G   K L R
Sbjct: 6   PVVSGLEKTK-------HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKNLER 58

Query: 247 SFIGIEMKQDYIDIATKRI 265
            FIGIE +++Y   A KR+
Sbjct: 59  KFIGIESEKEYFQTAQKRL 77


>gi|319775706|ref|YP_004138194.1| DNA methylase [Haemophilus influenzae F3047]
 gi|317450297|emb|CBY86513.1| DNA methylase [Haemophilus influenzae F3047]
          Length = 245

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 95/242 (39%), Gaps = 28/242 (11%)

Query: 39  SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD--------AFTRAWLL 90
              L+ AD PYNL  N     P+  +     +     ++   +D         F      
Sbjct: 20  KAQLVIADIPYNLGNNAYASNPEWYVNGDNKNGESDKANSSFFDTDKDFRIAEFMHFCSK 79

Query: 91  ACRRVLKPNG---TLWVIGSYHNIFRIGTMLQNLNFWILNDIVW-RKSNPMPNFRGRRFQ 146
              +  K  G    + V  ++  I  +    +   F     +V+ + S+P       +  
Sbjct: 80  MLIKEPKERGKAPCMIVFCAFQQISMVIDYAKQHGFKNHIPLVFIKSSSPQVLKANMKVV 139

Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
            A E  +        K            N + +M  +W        E+   K+  KLHPT
Sbjct: 140 GATEYALILYRDKLPK-----------FNNNGKMIKNWFE-----WEKDNRKEIPKLHPT 183

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           QKP A+L R++   T  GD+++DP  GS ++   A++L R   G E+K+D   IA +++ 
Sbjct: 184 QKPIAVLKRLIEIFTDEGDVVIDPVAGSASTLRAARELNRPSYGFEIKKDSCKIAKEQML 243

Query: 267 SV 268
           ++
Sbjct: 244 NI 245


>gi|257462692|ref|ZP_05627101.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
           D12]
          Length = 260

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 56/253 (22%), Positives = 103/253 (40%), Gaps = 30/253 (11%)

Query: 39  SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS---FEAYDAF-TRAWLLACRR 94
              LI AD PYNL  N     P+  +     +   K ++   F+    F    +   C +
Sbjct: 25  KAQLIIADIPYNLGNNAYASSPEWYIGGDNKNGESKKANKSFFDTDHNFKIAEFFHFCSK 84

Query: 95  VLKPNG-------TLWVIGSYHNIFRIGTMLQNLNFWILNDIVW-RKSNPMPNFRGRRFQ 146
           +LKP          + V  ++     +              +V+ + S+P       R  
Sbjct: 85  MLKPEPKEKNQAPCMIVFCAFQQFQTVIDYAAKYGIKKYIPLVFIKNSSPQVLKANMRVV 144

Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
            A E  +        K              + +M  +W        E+ +  + EK+HPT
Sbjct: 145 GACEYALVLYRDKLPK-----------FRNNKKMIKNWFE-----WEKDKKGEVEKIHPT 188

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           QKP+ +L +++   T  GD+++DP  GSG++   AK L+R+  G E+K+D   +A +++ 
Sbjct: 189 QKPQRVLKKLIEIFTDEGDVVIDPVAGSGSTLRAAKDLKRNSYGFEIKKDMYQLALEKV- 247

Query: 267 SVQPLGNIELTVL 279
            + P  ++E   +
Sbjct: 248 -INPQKDVEQLEM 259


>gi|290558935|gb|EFD92321.1| hypothetical protein BJBARM5_0955 [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 217

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 5/130 (3%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +K+  G+++ V+  LP++S+DLI+ DPP+    N  +   D + V    D WD       
Sbjct: 91  NKLYWGDNLHVMRTLPSESIDLIYIDPPFFSGRNYNMIFQDKNEVLTFEDIWDG--GLPT 148

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMP 138
           Y  +  A L+  +R+LKP G+++V   +H    +   +  +      LN+IVW       
Sbjct: 149 YQVWLNARLVEMKRLLKPTGSIYVHLDWHASHYMKVEMDKIFGYDKFLNEIVWCY-RGGG 207

Query: 139 NFRGRRFQNA 148
            F G   + A
Sbjct: 208 AFTGWICKKA 217


>gi|94268294|ref|ZP_01291133.1| DNA methylase N-4/N-6 [delta proteobacterium MLMS-1]
 gi|93451668|gb|EAT02451.1| DNA methylase N-4/N-6 [delta proteobacterium MLMS-1]
          Length = 622

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 63/352 (17%), Positives = 126/352 (35%), Gaps = 91/352 (25%)

Query: 7   LAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVD----------LIFADPPYNLQ---- 52
             ++     +  W +K+I G++  +L  L    +           LI+ DPP+++     
Sbjct: 79  FDVDARGRQLKGWTNKLIWGDNKLILSSLKNGPLREEIEAQGGLKLIYIDPPFDVGADFS 138

Query: 53  ----LNGQLYRPDHSLVD--AVTDSWDKFSS------FEAY------------------- 81
               + G  +    S ++  A  D+W K +       +E                     
Sbjct: 139 MDIEIGGDTFTKRPSFLEEIAYRDTWGKGADSFIAMIYERMILLRDLLAENGSIYVHCDW 198

Query: 82  --DAFTRAWLLACRRVLKPNG---------------------TLWVIG-----------S 107
             ++F R  +     V    G                     +L+              +
Sbjct: 199 RVNSFIRVVMDEVFGVDNNRGEIIWKRASAHSDSSAYGQVHDSLYYFSKARKPIWNSPLT 258

Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
            +  + +    +  +      +    S    +  G R+       +W    P++K    +
Sbjct: 259 KYEEWYLDRYYRYTDVDGRKFMSDNLSAKGLSGGGYRYTWKGCEGLW--RCPESKMQQLD 316

Query: 168 YDALKAANEDVQMRSDWLI------PICSGSERLRN----KDGEKLHPTQKPEALLSRIL 217
            ++     ++   R    I      P+ S  + +++        + +PTQKPEA+L RI+
Sbjct: 317 AESRIFYTKNGVPRLKRFIDEMEGRPVQSVWDDIQSVVSWARETETYPTQKPEAILERII 376

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            +S+  GD++ D F GSGT+ AVA+KL R +I  ++ +  +    KR+  VQ
Sbjct: 377 KASSNEGDLVADFFCGSGTTAAVAEKLGRRWICTDLGKFAVHTTRKRMIGVQ 428


>gi|237743768|ref|ZP_04574249.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
 gi|229432799|gb|EEO43011.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
          Length = 261

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 99/243 (40%), Gaps = 28/243 (11%)

Query: 39  SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD--------AFTRAWLL 90
              LI AD PYNL  N     P+  +     +     ++   +D         F      
Sbjct: 27  KAQLIIADIPYNLGNNAYASSPEWYINGDNKNGESSKANKAFFDTDHNFKIAEFMHFCQK 86

Query: 91  ACRRVLKPNG---TLWVIGSYHNIFRIGTMLQNLNFW-ILNDIVWRKSNPMPNFRGRRFQ 146
             ++  K  G    + +  ++  I  +    +   F   +     ++S+P       +  
Sbjct: 87  MLKKEPKEKGKAPCMIIFCAFQQINTLIEYAKKYGFENYIPIFFIKQSSPQVLKANMKIV 146

Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
            A E  +            F  D L   N + +M  +W        E+   +  +K+HPT
Sbjct: 147 GATEYAL-----------IFYRDKLPKFNNNGKMIKNWF-----NWEKDNKEKVKKIHPT 190

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           QKP A+L R++   T  GD+++DP  GSGT+   AK+L+R+  G E+K+D   +A + + 
Sbjct: 191 QKPIAILKRLIEIFTDAGDVVIDPCAGSGTTLRAAKELKRNSYGFEIKKDMYSLALEHMI 250

Query: 267 SVQ 269
           + +
Sbjct: 251 NYK 253


>gi|45580774|ref|NP_996640.1| adenine DNA methyltransferase [Bordetella phage BIP-1]
          Length = 258

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 72/205 (35%), Gaps = 28/205 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDAVTDSW-----D 73
           ++I+G ++  L  +P++SVD +  DPPY       + +   PD     + +         
Sbjct: 7   QLIQGEALPALIAMPSESVDAVITDPPYSSGGFSRDDKAKDPDAKYTQSGSQGRYPTFSG 66

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                 +Y  +   W+  C RVLKP G       +  +  +   +Q    +    I W K
Sbjct: 67  DSRDQRSYLTWCSLWIAECVRVLKPGGYFMAFTDWRQLPLMSDAVQAGGVFWRGLIAWDK 126

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
                      F++  E ++W +                      Q+  D       G  
Sbjct: 127 GRGARAPHKGYFRHQCEYVVWGTKGAAV-----------------QLEHDGPFD---GCI 166

Query: 194 RLRNKDGEKLHPTQKPEALLSRILV 218
           +   +  +K H T KP AL+  ++ 
Sbjct: 167 QAVVRRDDKHHLTGKPTALMRELVR 191


>gi|163797174|ref|ZP_02191128.1| ParB domain protein nuclease [alpha proteobacterium BAL199]
 gi|159177469|gb|EDP62023.1| ParB domain protein nuclease [alpha proteobacterium BAL199]
          Length = 439

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 81/250 (32%), Gaps = 29/250 (11%)

Query: 21  DKIIKGNSI--SVLEKLPAKSVDLIF--ADPPYNLQLNGQLYRPDHSLVD-AVTDSWDKF 75
            +++ G+S     + +L       +    DPPY +  +G  +   +     +   +WD  
Sbjct: 176 HRLLCGDSTKPEDVRRLMNGE-RAVLFATDPPYLVDYDGSNHPTRNKDWSHSYGVTWDDS 234

Query: 76  S-SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
           S   + YD F  A +             +   +      +    +    ++   I+W K 
Sbjct: 235 SQGSDLYDGFIAAAVAEAIAEDA---AWYCWHASRRQAMLEACWEKAGAFVHQQIIWVKD 291

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
             +       +   HE        P                 D  + S W +P  +  ER
Sbjct: 292 RGV--LTRSHYLWKHEPCFMGWRRPN----------RPPKVADETLASTWELPSFAKDER 339

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                    HPT KP       +      G +  +PF GSG+     +   R    +E+ 
Sbjct: 340 PD-------HPTPKPLDAFGIPMRQHVARGGLCYEPFSGSGSQIMAGEANGRRVFAMEIS 392

Query: 255 QDYIDIATKR 264
             Y+D+A +R
Sbjct: 393 PAYVDVAVER 402


>gi|163797425|ref|ZP_02191377.1| ParB domain protein nuclease [alpha proteobacterium BAL199]
 gi|159177344|gb|EDP61901.1| ParB domain protein nuclease [alpha proteobacterium BAL199]
          Length = 437

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 78/250 (31%), Gaps = 29/250 (11%)

Query: 21  DKIIKGNSI--SVLEKLPAKSVDLIF--ADPPYNLQLNGQLYRPDHSLVD-AVTDSWDKF 75
            +++ G+S     + +L       +    DPPY +  +G  +   +     +   +WD  
Sbjct: 176 HRLLCGDSTKPEDVRRLMNGE-RAVLFATDPPYLVDYDGSNHPTRNKDWSHSYGVTWDDS 234

Query: 76  S-SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
           S   E YD F  A + A           +   +      +    +    ++   I+W K 
Sbjct: 235 SQGAELYDGFIAAAVAAAIAKDA---AWYCWHASRRQAMLEACWEKAGAFVHQQIIWVKD 291

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
             +       +   HE        P                        W +P       
Sbjct: 292 RGV--LTRSHYLWKHEPCFMGWRRPNRPPKVAEETLAST----------WPLP------- 332

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
              KD    HPT KP       +      G +  +PF GSG+     +   R    +E+ 
Sbjct: 333 SFAKDDRPDHPTPKPLDAFGIPMRQHVARGGLCYEPFSGSGSQIMAGEANGRRVYAMEIS 392

Query: 255 QDYIDIATKR 264
             Y+D+A +R
Sbjct: 393 PAYVDVAIER 402


>gi|159033046|gb|ABW87807.1| SpcM [Streptomyces spectabilis]
          Length = 267

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 92/249 (36%), Gaps = 38/249 (15%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
             G+S+++LE +P  SV  +   PP+     G     D     A +  W           
Sbjct: 22  HWGDSLALLEGVPDGSVRAVVCSPPF----EGPQLIADEDRAGACSSDW----------- 66

Query: 84  FTRAWLLACRRVLKPNGT-------LWVI---GSYHNIFRIGTMLQNLNFWILNDIVWRK 133
               +     RVL+P+G        LW+    G           L    + ++ D  +  
Sbjct: 67  -LMPFFGQFERVLRPDGCVAFELGGLWLSDAPGKAVQHAGAVHALAKAGWRLVQDFYYYN 125

Query: 134 S---NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
               NP P    R    A +++       +     ++  AL+       +R + L    S
Sbjct: 126 PQLLNPEPEGAAR----APDSVTPIWVMARTHDVHYDVSALRHPARAPFVRGNLLEFDTS 181

Query: 191 GSERLRNKD---GEKLHPT--QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           G      +       LHP   + P  +    +   T+PGD++LDPF GSG +   A++L 
Sbjct: 182 GVYDRAYEKTLAETSLHPYVDRWPTVVPELFVELLTRPGDLVLDPFAGSGATCFAAERLG 241

Query: 246 RSFIGIEMK 254
           R ++G E+ 
Sbjct: 242 RRWLGFELD 250


>gi|317060340|ref|ZP_07924825.1| conserved hypothetical protein [Fusobacterium sp. D12]
 gi|313686016|gb|EFS22851.1| conserved hypothetical protein [Fusobacterium sp. D12]
          Length = 255

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 56/253 (22%), Positives = 103/253 (40%), Gaps = 30/253 (11%)

Query: 39  SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS---FEAYDAF-TRAWLLACRR 94
              LI AD PYNL  N     P+  +     +   K ++   F+    F    +   C +
Sbjct: 20  KAQLIIADIPYNLGNNAYASSPEWYIGGDNKNGESKKANKSFFDTDHNFKIAEFFHFCSK 79

Query: 95  VLKPNG-------TLWVIGSYHNIFRIGTMLQNLNFWILNDIVW-RKSNPMPNFRGRRFQ 146
           +LKP          + V  ++     +              +V+ + S+P       R  
Sbjct: 80  MLKPEPKEKNQAPCMIVFCAFQQFQTVIDYAAKYGIKKYIPLVFIKNSSPQVLKANMRVV 139

Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
            A E  +        K              + +M  +W        E+ +  + EK+HPT
Sbjct: 140 GACEYALVLYRDKLPK-----------FRNNKKMIKNWFE-----WEKDKKGEVEKIHPT 183

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           QKP+ +L +++   T  GD+++DP  GSG++   AK L+R+  G E+K+D   +A +++ 
Sbjct: 184 QKPQRVLKKLIEIFTDEGDVVIDPVAGSGSTLRAAKDLKRNSYGFEIKKDMYQLALEKV- 242

Query: 267 SVQPLGNIELTVL 279
            + P  ++E   +
Sbjct: 243 -INPQKDVEQLEM 254


>gi|307151722|ref|YP_003887106.1| DNA methylase N-4/N-6 domain-containing protein [Cyanothece sp. PCC
           7822]
 gi|306981950|gb|ADN13831.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7822]
          Length = 328

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 59/313 (18%), Positives = 119/313 (38%), Gaps = 75/313 (23%)

Query: 29  ISVLEKLPAKSVDLIFADPPY---------NLQLN-------------GQLYRPDHSLVD 66
           +++L ++P +++DLI   PP+         N+  +              ++ +P+ SLV 
Sbjct: 1   MAILSEVPDETIDLICTSPPFALLRKKEYGNVNADQYVQWFETFAQQFYRILKPNGSLVI 60

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG--SYHNIF------------ 112
            +  SW K     +   F    +  C+  ++     ++     ++N              
Sbjct: 61  DIGGSWVKGYPVRSLYHF-ELVMHLCKPRIEGGLGFYLAQELYWYNPAKLPTPAEWVTVR 119

Query: 113 --RIGTMLQNLNFWILNDIVWRKSN-----PMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
             R+   + N  +W+  D   +  N     P         +N ++  +  S    ++ + 
Sbjct: 120 RERVKDAV-NTIWWLSKDPHPKACNKNVLRPYSKAMENFLKNGYDAKLRPSGHDISRKFQ 178

Query: 166 FNYDALKAAN--------------------EDVQMRSDWLIPICSGS----------ERL 195
            N       N                     D  + +D   P+   S          +R 
Sbjct: 179 KNRGGAIPPNIIDAQESAVATAIGSPVLATFDWLLSNDLAQPVNVISASNTASNDYYQRR 238

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
             ++G K HP + P+AL   I+   T+PGD++LDPF GS  +G VA+ L+R ++ I++ +
Sbjct: 239 CKEEGLKPHPARFPQALPEFIINLCTEPGDLVLDPFCGSNVTGRVAEDLKRHWLAIDINE 298

Query: 256 DYIDIATKRIASV 268
           +Y+  +  R    
Sbjct: 299 EYLKASQYRFEQA 311


>gi|317178081|dbj|BAJ55870.1| fusion protein of dpnA and hopN [Helicobacter pylori F16]
          Length = 95

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/62 (54%), Positives = 45/62 (72%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPTQK  AL+ +I+   T P DI+LDPF GSGT+G   K+L R+FIGIE +++Y  IA K
Sbjct: 31  HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLERNFIGIESEKEYFQIAKK 90

Query: 264 RI 265
           R+
Sbjct: 91  RL 92


>gi|205357999|ref|ZP_03223900.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205328364|gb|EDZ15128.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
          Length = 307

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 43/70 (61%)

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           +D EK HPTQKP ALL  ++ + + PGD +LD   GSG++G       R FIGIE +Q Y
Sbjct: 232 RDREKYHPTQKPVALLEDLIQTYSNPGDTVLDFTMGSGSTGVACVNTGRRFIGIEKEQKY 291

Query: 258 IDIATKRIAS 267
            DIA  RI  
Sbjct: 292 FDIAAARIEK 301



 Score = 73.5 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 54/159 (33%), Gaps = 15/159 (9%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           E    I  G+ + V+  L   SVDLI  DPPY     G +   +     A T  WD    
Sbjct: 4   EMNHTIYHGDCLDVMPTLEHGSVDLIVCDPPY-----GTMKGANLDTWSAATTQWDDAID 58

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
                    A    C RVL+ NG L +        R+ T   + N      + W K +  
Sbjct: 59  P-------VALFAVCERVLRVNGALVLFAQEPYTSRLITQAHS-NLPFSYRLAWEKEHFG 110

Query: 138 PNFRGRRFQNAH--ETLIWASPSPKAKGYTFNYDALKAA 174
              + +    ++  + L++         +     + +  
Sbjct: 111 NPLQAKNAPVSYFEDVLVFFKKYEPNLNHPMREYSRRVK 149


>gi|17545563|ref|NP_518965.1| hypothetical protein RSc0844 [Ralstonia solanacearum GMI1000]
 gi|17427856|emb|CAD14546.1| putative dna modification methylase protein [Ralstonia solanacearum
           GMI1000]
          Length = 441

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 56/286 (19%), Positives = 89/286 (31%), Gaps = 58/286 (20%)

Query: 42  LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
           L F  PPY  Q N                          +D   R        +      
Sbjct: 173 LCFTSPPYANQRNYTTG------------------GIADWDVLMRGVFGNV-PMAGDGQV 213

Query: 102 LWVIGSYH-------NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
           L  +G  H               ++   +      VW +   MP     R   + E +  
Sbjct: 214 LVNLGLVHRDSEVVPYWDAWIAWMRTQGWRRFGWYVWDQGPGMPGDWMGRLAPSFEFVFH 273

Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG----------------------- 191
            +   +    T      K A +D  +R D       G                       
Sbjct: 274 FNREARRPHKT---VPCKFAGQDEHLRPDGTSTSMRGRDGIRGSWTHKGKLTQDTRIPDS 330

Query: 192 ---SERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                R + K G  + HP   P AL   ++ + +  GDI+ +PF GSGT+   A++  R 
Sbjct: 331 VIRVMRHKGKIGRDIDHPAVFPVALPEFVIEAYSDAGDIVFEPFGGSGTTMLAAQRTGRL 390

Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
              +E+  +Y+D+A KR    Q      +T+ +  +T   VA   L
Sbjct: 391 CHSVEIAPEYVDVAIKRFQ--QNYPEAPVTLQSTGQTFAAVAAERL 434


>gi|332086446|gb|EGI91593.1| hypothetical protein SD15574_3806 [Shigella dysenteriae 155-74]
          Length = 197

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 20/188 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+K+PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            + + + +E ++       AK YTFN DA+    +    R+  LI       +  N    
Sbjct: 120 KKHYGSMYEPILMMVK--DAKNYTFNGDAILVEAKTGSQRA--LIDYRKNPPQPYNHQKV 175

Query: 202 KLHPTQKP 209
             +    P
Sbjct: 176 PGNVWDFP 183


>gi|317182587|dbj|BAJ60371.1| fusion protein of dpnA and hopN [Helicobacter pylori F57]
          Length = 95

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/62 (54%), Positives = 45/62 (72%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPTQK  AL+ +I+   T P DI+LDPF GSGT+G   K+L R+FIGIE +++Y  IA K
Sbjct: 31  HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLERNFIGIESEKEYFQIAKK 90

Query: 264 RI 265
           R+
Sbjct: 91  RL 92


>gi|315587231|gb|ADU41612.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori 35A]
          Length = 95

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/62 (54%), Positives = 45/62 (72%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPTQK  AL+ +I+   T P DI+LDPF GSGT+G   K+L R+FIGIE +++Y  IA K
Sbjct: 31  HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLERNFIGIESEKEYFQIAKK 90

Query: 264 RI 265
           R+
Sbjct: 91  RL 92


>gi|319644069|ref|ZP_07998628.1| hypothetical protein HMPREF9011_04231 [Bacteroides sp. 3_1_40A]
 gi|317384417|gb|EFV65385.1| hypothetical protein HMPREF9011_04231 [Bacteroides sp. 3_1_40A]
          Length = 112

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/82 (37%), Positives = 45/82 (54%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
            P    S    +K G   HPTQKP AL+  ++ + T  GD++LD   GSGT+   A +  
Sbjct: 13  YPTSVISIPKEHKTGAFYHPTQKPVALIEYLIRTYTNEGDVVLDNCIGSGTTAIAAIRTG 72

Query: 246 RSFIGIEMKQDYIDIATKRIAS 267
           R +IG E++  Y +IA +RI  
Sbjct: 73  RHYIGFEIEPTYCEIAGRRIRE 94


>gi|187251367|ref|YP_001875849.1| DNA modification methylase [Elusimicrobium minutum Pei191]
 gi|186971527|gb|ACC98512.1| DNA modification methylase [Elusimicrobium minutum Pei191]
          Length = 396

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 49/288 (17%), Positives = 94/288 (32%), Gaps = 49/288 (17%)

Query: 5   NSLAINENQNSIFEWKDKIIKGNSI--SVLEKLPAKSVDLIFADPPYNLQL-NGQLYRPD 61
           N+ A+ +  N     K +++ G+S      + + AK  D IF DPPY + +         
Sbjct: 147 NAPAVTKTGNVWLLGKHRLLCGDSTKKESFDAISAKEADFIFTDPPYGIDIAKSGAIGSS 206

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
                 +    D         A  RA+    + +   +  +W              L   
Sbjct: 207 GKKYKPIIGDND--------TATARAFYELAKELNLKDMLIWGAN------YFADFL--- 249

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV--Q 179
                                RR+      L+W            + +     ++     
Sbjct: 250 ------------------PVSRRW------LVWNKRGEMDSNNFADGEIAWVRSDGNLRI 285

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
               W      GS +   K   ++HPTQKP  +    +    +P +++ D F GSG++  
Sbjct: 286 FSHVWSGYTREGSHKEELKT--RIHPTQKPVGVCID-IFKELEPFEVVFDAFMGSGSTLI 342

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
             +K+++  +GIE+   Y D+  +R  +      +          E +
Sbjct: 343 ACEKMKKVCLGIEIDPKYCDLIIERWQNYTGEKAVLKNTGKTYEEEKK 390


>gi|257461052|ref|ZP_05626150.1| adenine-specific DNA methylase [Campylobacter gracilis RM3268]
 gi|257441426|gb|EEV16571.1| adenine-specific DNA methylase [Campylobacter gracilis RM3268]
          Length = 823

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 61/316 (19%), Positives = 113/316 (35%), Gaps = 72/316 (22%)

Query: 1   MSQKNSLAINENQNSIFEWKD-KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQ 56
           +S KN L +     ++ E  + +++K ++ + L  L       +DLI+ DPP+N      
Sbjct: 360 LSNKNRLDLLSRFENLDEILNGELVKSDNFAALNTLMPRYKGKIDLIYIDPPFNTG---- 415

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
               D    D   D+         +    +  L   R +L   G+ ++    +  F    
Sbjct: 416 ---SDFEYKDRFQDA--------TWLTLMQNRLELAREILSDRGSFYLHLDENADFLGRM 464

Query: 117 MLQNLNFWILNDIVWRKSNPMPN---------FRGRRFQNAHETLIWASP---------- 157
           +L  +  +     +   +N   +           G  F     T+ +             
Sbjct: 465 LLDEIFNFDECKKITFNTNATKDEEADLFGYKSFGNNFALKSSTIFFIKNGNSIFNKLWK 524

Query: 158 -----------------------SPKAKGYTF----------NYDALKAANEDVQMRSDW 184
                                    K K Y F             ++  +NE +    D 
Sbjct: 525 PNRNISQLNLGQLDLIAVAKTNCPKKIKDYNFLIEQYENDKLKLQSVDISNEKIYPVGDI 584

Query: 185 LIPICSGSERLRNKDGE-KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
              I S ++           + +QKPE ++ RI+ +S+   +++LD F GSGT+ +VA K
Sbjct: 585 WNDIYSFTQSEMRVSENISFYSSQKPEHMIRRIIQASSNQNNLVLDFFTGSGTTCSVAHK 644

Query: 244 LRRSFIGIEMKQDYID 259
           L+R +IGIEM   + +
Sbjct: 645 LKRRWIGIEMGNHFYE 660


>gi|229149253|ref|ZP_04277492.1| DNA methylase N-4/N-6 domain protein [Bacillus cereus m1550]
 gi|228634225|gb|EEK90815.1| DNA methylase N-4/N-6 domain protein [Bacillus cereus m1550]
          Length = 656

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 56/282 (19%), Positives = 105/282 (37%), Gaps = 29/282 (10%)

Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAH-ETLIWASPSPKAKGYTFNYDA 170
           +    +L++        +V+      P   G R + +  E L        +K        
Sbjct: 238 YYDAPILRSNGMGERPHLVYEYKGFTPGPAGWRMKKSSLEKLDLEGNLGWSKTGKPFRKL 297

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
              +++   + S W       S      +    +PTQKP  LL RI+++S+KPGDI+ D 
Sbjct: 298 RPESDKGKPVGSFWN----DISLINSQAEERVGYPTQKPVKLLERIILASSKPGDIVFDC 353

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI----ASVQPLGNIELTVLTGKRT-E 285
           F GSGT+   A  L R FIG ++    I   TKR+      +  L   +   +T K   E
Sbjct: 354 FMGSGTTQNAAMNLGRKFIGADINLGSIQTTTKRLINEVRKIDALLKADTGQMTFKNEFE 413

Query: 286 PRVAFNLLVE--RGLIQPGQILTNAQGN-----------ISATVCADGTLISGT------ 326
             V +N + E   G         +   N           +        ++  G       
Sbjct: 414 DEVTYNSISEYYTGFNVYNVNNYDIFKNPVEAKNILLEVLEVQPLVSNSVFDGEKDGAMV 473

Query: 327 ELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
           ++  ++R+  K   ++     ++  +EK  + + +  +  ++
Sbjct: 474 KIMPVNRITTKADLNDLITNIDYKMYEKRQQENPMQIVENII 515



 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 70/158 (44%), Gaps = 17/158 (10%)

Query: 19  WKDKIIKGNSISVLEKLPAK---SVDLIFADPPYN--------LQLNGQLYRPDHSLVDA 67
           W +KI  G+++ V+  L  K      LI+ DPP++        + + G+    D S  + 
Sbjct: 54  WMNKIFWGDNLQVMSHLLKKYRGQFKLIYIDPPFDSKAQYKKSVSIKGKSAENDTSFFED 113

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--I 125
               ++   + + Y  F    L+  R +L  +G++++   +H    +  ++  +      
Sbjct: 114 T--QYNDIWANDDYLQFMYERLILLRELLADDGSIYLHCDWHKSHHLRMIMDEIFGESNF 171

Query: 126 LNDIVW-RKSNPMPNFRGRR-FQNAHETLIWASPSPKA 161
            N+I+W R +NP  +    R F +  +T+ +   +P A
Sbjct: 172 RNEIIWVRSTNPKGSQHESRTFSHFTDTIFYYVKTPSA 209


>gi|327188048|gb|EGE55276.1| DNA methylase N-4/N-6 domain-containing protein [Rhizobium etli
           CNPAF512]
          Length = 1045

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 53/331 (16%), Positives = 110/331 (33%), Gaps = 84/331 (25%)

Query: 19  WKDKIIKGNSISVLEKLPAK-----SVDLIFADPPYNLQL-----------------NGQ 56
           W ++++ G+S+ V+  L AK      V +I+ DPPY ++                    +
Sbjct: 274 WSNRLVAGDSLLVMNSLLAKESMRGKVQMIYIDPPYGIKYGSNFQPFTNKRKLSDSDKDE 333

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
               +  ++ A  D+W+      +Y  + R  L+  R +L  +G ++V  S  N+  +  
Sbjct: 334 DLNQEPEMIKAFRDTWE--LGIHSYLTYLRDRLILARELLNDSGAVFVQISDENVHLVRG 391

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY------------ 164
           +L  + F + N +     +   +  G       + L++ + +     Y            
Sbjct: 392 VLDEI-FGVTNFVSQISFSKTGSVTGSHLGKVCDILLFYAKNKDRLKYRTLYEKKPDMDG 450

Query: 165 ---------------TFNYDALKAANEDVQMRSDWLIPIC-------------------- 189
                          T         +        W +PI                     
Sbjct: 451 DYSEDPLKSDGFRSTTTCPYNFMGKSWPCGANEHWKVPIEGLDRAAKAGRIVPKTTSLRL 510

Query: 190 ------------SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                                     +  +    ++ R ++ +T PGD++LD   GSGT+
Sbjct: 511 KKFATDFEYKVFHSVWLGFGGASNMQYVVETNTRIVERCILMTTDPGDLVLDITCGSGTT 570

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
              A+K  R +I  +  +  I +A +R+ + 
Sbjct: 571 AFTAEKWGRRWITCDTSRIAITLAKQRLMTA 601


>gi|109946717|ref|YP_663945.1| adenine specific DNA methyltransferase fragment 3 [Helicobacter
           acinonychis str. Sheeba]
 gi|109713938|emb|CAJ98946.1| adenine specific DNA methyltransferase fragment 3 [Helicobacter
           acinonychis str. Sheeba]
          Length = 71

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 47/71 (66%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
            ++     HPTQK  AL+ +I+   T P D++LDPF GSGT+G   K L+R+FIG E+++
Sbjct: 1   MSRTERVKHPTQKSLALMEKIISIHTNPNDLVLDPFMGSGTTGLTCKNLKRNFIGTELEK 60

Query: 256 DYIDIATKRIA 266
           +Y  IA KR+ 
Sbjct: 61  EYFQIAKKRLG 71


>gi|291288949|ref|YP_003517452.1| adenine-specific methyltransferase [Klebsiella pneumoniae]
 gi|290792081|gb|ADD63407.1| adenine-specific methyltransferase [Klebsiella pneumoniae]
          Length = 176

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 74/190 (38%), Gaps = 24/190 (12%)

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
             RVLK +  +    S++ + R     +   F+ +  +V+ K+                 
Sbjct: 1   MYRVLKKDALMVSFYSWNRVDRFMAAWKAAGFYAVGQLVFTKNYASNRRN---------- 50

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
                   +     + ++      +   +     +P            G  LHPTQKP  
Sbjct: 51  -----ARARRGFVDYCHEGAYVLAKGRPVPPLKPLPDVLPFPYT----GNTLHPTQKPVE 101

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ-- 269
            L  ++ S + PG I+LDPF GSG++   A +  R +IGIEM   Y    T+R+A++   
Sbjct: 102 ALQPLIESFSAPGAIVLDPFAGSGSTCVAAYRAGRRYIGIEMLAQYHRAGTERLAAMHRA 161

Query: 270 ---PLGNIEL 276
              P  N E 
Sbjct: 162 VNTPAANDEW 171


>gi|1498743|gb|AAC44855.1| aatII methylase [Acetobacter aceti]
          Length = 331

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 50/275 (18%), Positives = 94/275 (34%), Gaps = 30/275 (10%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNL----QLNGQLYRPDHSLVDAVTDSWDKFS------ 76
           ++I  L +LP  S+  +  DPPY +      + Q  R     V  +  S+D         
Sbjct: 55  DAIHFLSELPPNSIHAVVTDPPYGVIEYEDKHHQKLRSGRGGVWRIPPSFDGVKRSPLPR 114

Query: 77  ----SFEAYDAFTRAWLLACR---RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
               S +  +  +  +        R L P G +++  +      +    Q   F    ++
Sbjct: 115 FTVLSEDELNRLSSFFSALAYGLHRALVPGGHVFMAANPLLSSMVFHAFQTAGFEKRGEV 174

Query: 130 VWRKSNPMPNFRGR-----------RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
           +          R +             ++  E        P +   + N           
Sbjct: 175 IRLVQTLRGGDRPKGAEKEFSDVSMMARSCWEPW-GMFRKPFSGPASTNLRTWGTGGLRR 233

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG-DIILDPFFGSGTS 237
              ++    +   S     +     HP+ KP+  L +++ ++   G  II DPF GSG++
Sbjct: 234 ISDTEPFKDVILCSPTRGREREIAPHPSLKPQRFLRQVVRAALPLGIGIIYDPFAGSGST 293

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
            A A+ +    IG +    Y  I TK  +S+  L 
Sbjct: 294 LAAAEAVGYRAIGTDRDAQYFGIGTKAFSSLSTLD 328


>gi|313892471|ref|ZP_07826061.1| DNA (cytosine-5-)-methyltransferase [Dialister microaerophilus UPII
           345-E]
 gi|313119153|gb|EFR42355.1| DNA (cytosine-5-)-methyltransferase [Dialister microaerophilus UPII
           345-E]
          Length = 299

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 107/301 (35%), Gaps = 39/301 (12%)

Query: 4   KNSLAINENQNSIFEWKDK-----IIKGNSISVLEK--LPAKSVDLIFADPPYNLQ---- 52
              L    N  S  ++KDK     +   ++    ++  +P     L+ AD PY L+    
Sbjct: 11  SERLNKVNNAKSEKKYKDKPIKIELYN-DNFQNYKRYNIP--KAQLVIADIPYRLEEKAY 67

Query: 53  -------LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT-RAWLLACRRVLKPNGTLWV 104
                   NG     +    +      D+      Y  F  +  +   +   K    +  
Sbjct: 68  ASSPKWYKNGDNSNGESKFANKSFFKTDEIFRIAEYMHFCSKLLIKEPKERGKAPAMIV- 126

Query: 105 IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF---QNAHETLIWASPSPKA 161
             S+  I  +    +   F     I + K+      +          H  +++    PK 
Sbjct: 127 FCSFEQIPIVVEYGKKYGFAHNYPIFFIKNYSAQVLKANMKIVGAVEHAVVLYRDKLPKF 186

Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
                        N D  M  ++ I      +R   K   K+HPTQKP  +L +++   T
Sbjct: 187 NN--------TDENGDRHMIFNYFI-----WKRDNQKIYPKIHPTQKPVNILKKLIEIFT 233

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
              D+++DP  GSG++     +L RS  G E+++++   A +++ + +   N+       
Sbjct: 234 DEKDVVIDPVAGSGSTLRACMELNRSCYGFEVEKEFYRSAKEKMLNAKINDNLFSKEFKH 293

Query: 282 K 282
           +
Sbjct: 294 E 294


>gi|189485518|ref|YP_001956459.1| adenine/cytosine-specific DNA methylase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|170287477|dbj|BAG13998.1| adenine/cytosine-specific DNA methylase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 214

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 72/225 (32%), Gaps = 37/225 (16%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   +  +   ++  +S+DL   DPPYN++                    D F S + 
Sbjct: 5   NKIYNLDCFTFFNQVEKESIDLAIIDPPYNMKKAKG----------------DTFKSHQD 48

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           +  FT  W+ A    LK  G+L++  +  N   I   L +      N I W K + +   
Sbjct: 49  FLYFTFKWINALIPTLKETGSLYIFNTPFNCAYILQYLVDKGLIFQNWITWDKRDGLGTS 108

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTF---------------------NYDALKAANEDVQ 179
           + +        L +         Y                       N       ++   
Sbjct: 109 KTKYSNGQESILFFTKNKKHIFNYDEIRVPYESTERIEHASKKGILKNGKRWFPNDKGRL 168

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
               W I       ++  K  +  H   KP  L+ RI+ +S+   
Sbjct: 169 CGEVWHIVSERHRNKINGKTIKNEHVASKPLELIERIIKASSNEK 213


>gi|218672851|ref|ZP_03522520.1| DNA methylase N-4/N-6 domain-containing protein [Rhizobium etli
           GR56]
          Length = 724

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 53/331 (16%), Positives = 110/331 (33%), Gaps = 84/331 (25%)

Query: 19  WKDKIIKGNSISVLEKLPAK-----SVDLIFADPPYNLQL-----------------NGQ 56
           W ++++ G+S+ V+  L AK      V +I+ DPPY ++                    +
Sbjct: 162 WSNRLVAGDSLLVMNSLLAKESMRGKVQMIYIDPPYGIKYGSNFQPFTNKRKLSDSDKDE 221

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
               +  ++ A  D+W+      +Y  + R  L+  R +L  +G ++V  S  N+  +  
Sbjct: 222 DLNQEPEMIKAFRDTWE--LGIHSYLTYLRDRLILARELLNDSGAVFVQISDENVHLVRG 279

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY------------ 164
           +L  + F + N +     +   +  G       + L++ + +     Y            
Sbjct: 280 VLDEI-FGVTNFVSQISFSKTGSVTGSHLGKVCDILLFYAKNKDRLKYRTLYEKKPDMDG 338

Query: 165 ---------------TFNYDALKAANEDVQMRSDWLIPIC-------------------- 189
                          T         +        W +PI                     
Sbjct: 339 DYSEDPLKSDGFRSTTTCPYNFMGKSWPCGANEHWKVPIEGLDRAAKAGRIVPKTTSLRL 398

Query: 190 ------------SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                                     +  +    ++ R ++ +T PGD++LD   GSGT+
Sbjct: 399 KKFATDFEYKVFHSVWLGFGGASNMQYVVETNTRIVERCILMTTDPGDLVLDITCGSGTT 458

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
              A+K  R +I  +  +  I +A +R+ + 
Sbjct: 459 AFTAEKWGRRWITCDTSRIAITLAKQRLMTA 489


>gi|320640054|gb|EFX09635.1| putative methyltransferase [Escherichia coli O157:H7 str. G5101]
          Length = 147

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 18/150 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+KLP +SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLLEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
            + + + +E ++       AK YTFN DA 
Sbjct: 120 KKHYGSMYEPILMMVK--DAKNYTFNGDAH 147


>gi|195661243|ref|YP_002117711.1| DNA methylase [Lactobacillus phage Lrm1]
 gi|166200957|gb|ABY84344.1| DNA methylase [Lactobacillus phage Lrm1]
          Length = 252

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 89/246 (36%), Gaps = 30/246 (12%)

Query: 39  SVDLIFADPPYNLQLNGQLYRP----DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
              L+ AD PYN+  N     P      +  +  +    K       D     ++  C  
Sbjct: 23  KAQLVIADIPYNIGNNAYGSNPTWYVGGNDKNGTSSKAGKTFFDTDVDFRVAEFMHFCSH 82

Query: 95  VL----KPNG---TLWVIGSYHNIFRIGTMLQNLNF-WILNDIVWRKSNPMPNFRGRRFQ 146
           +L    K  G    + V  ++  +  +    +   F      I  +  +        R  
Sbjct: 83  MLVKEPKERGKAPAMIVFCAFQQMQMVIEYGEKYGFQHSFPLIFIKNQSAQALKANMRIV 142

Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
            A E  +        K            N D QM  +W            +    K+HPT
Sbjct: 143 GATEYAVVLYRDKLPK-----------FNNDGQMVFNWF-------RWDTDSTYPKIHPT 184

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           QKP  +L R++   T  GD+++DP  GSG++   A +L RS  G E+K+D   +A +++ 
Sbjct: 185 QKPIPVLKRLIELFTDQGDVVIDPCAGSGSTLRAAAELGRSCFGFEIKKDMYRLAKEKML 244

Query: 267 SVQPLG 272
           S   L 
Sbjct: 245 STMSLA 250


>gi|2735920|gb|AAC46044.1| Tsp45I methyltransferase [Thermus sp. YS45]
          Length = 413

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 59/311 (18%), Positives = 99/311 (31%), Gaps = 77/311 (24%)

Query: 37  AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD------SWDKFSSFEAYDAFTRAWLL 90
           A  V L++ DPPY       +   +   V  V+        +D       +  F R  L+
Sbjct: 91  AGKVQLVYIDPPYGTGQQFLVGGDETDRVATVSQPKNGQLGYDDTLDGPQFVEFLRERLI 150

Query: 91  ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMPNFRGRRFQNA 148
             R ++  +G ++V       F +  +L  +      +N I    SNP    R       
Sbjct: 151 LLRELMADSGLIFVHIDEKYGFEVKLILDEVFGRRNFVNHIARIASNPKNFSRKAFGSQK 210

Query: 149 HETLIWASPSPKAKG------------------------YTFNYDALKAANEDVQMRSDW 184
              L+++                                YT N        +D      W
Sbjct: 211 DMILVYSKTRDYVWNESASPYSEEEIARLFPFVDENGERYTTNPLHAPGETKDGPTGRPW 270

Query: 185 --LIPICSGSERLRN------------------------------KDGEKL--------- 203
             ++P      R                                 K G+KL         
Sbjct: 271 RGILPPPGRHWRYPPEKLDELDAQGLIVWSKNGVPRKKVYARDRLKKGKKLQDVWQFKDP 330

Query: 204 ----HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
               +PT+K   +L  I+ + +  GD++LDPF GSGT+   +  L+R  IGI+   + + 
Sbjct: 331 PYPRYPTEKNLDMLKLIVQTGSNEGDLVLDPFAGSGTTLIASPLLKRRSIGIDASWEAVK 390

Query: 260 IATKRIASVQP 270
             T+R+    P
Sbjct: 391 AFTRRVLEDFP 401


>gi|30250236|ref|NP_842306.1| adenine specific DNA methylase Mod [Nitrosomonas europaea ATCC
           19718]
 gi|30181031|emb|CAD86221.1| Adenine specific DNA methylase Mod [Nitrosomonas europaea ATCC
           19718]
          Length = 567

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 65/331 (19%), Positives = 113/331 (34%), Gaps = 81/331 (24%)

Query: 19  WKDKIIKGNSISVLEKLPAKS---VDLIFADPPYN------------------------L 51
           + +++I G+++  L+ L  +    V  +F DPPYN                        L
Sbjct: 45  FDNRLIFGDNLLALKALEQEFAGEVKCVFIDPPYNTGSAFTHYDDGLEHSIWLGLMRDRL 104

Query: 52  QLNGQLYRPDHSLVDAVTDS---WDKFSSFEAYDAFTRAWLLACRR---VLKPNGTLWVI 105
           ++  +L   D SL   + D+   + K    E +        +  +R   V      +  I
Sbjct: 105 EIIKRLLSNDGSLWITIDDNECHYLKVLCDEIFGRANYKTTITWQRKYSVSNNFQGIASI 164

Query: 106 GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG--------------RRFQNAHET 151
             +  ++      +N       +   R +NP  + RG              +R    ++ 
Sbjct: 165 CDFVLVYSKSEAFKNNLLPRSEESAARYNNPDNDPRGPWKAVDYLNQATPEKRPNLCYDI 224

Query: 152 L-----IWASPSPKAKGYTFNYDALKAANEDVQM-----------------------RSD 183
           +     +    + KA  Y           + +                           +
Sbjct: 225 VNPNTGVVIKNTKKAWKYDPTTHQRHVDEKRIWWGRDGGNSVPALKLFLSEVRDGMTPHN 284

Query: 184 WLIPICSGSERLRNKD------GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           W      G      K+         +  T KPE LL RIL  +T PGD++LD F GSGT+
Sbjct: 285 WWSHEEVGHTDESKKEMIGLYGPRDVFDTPKPERLLKRILEIATNPGDLVLDSFAGSGTT 344

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           GAVA K+ R +I +E+ +        R+  V
Sbjct: 345 GAVAHKMGRRWIMVELGEHCHTHIIPRLKKV 375


>gi|85716202|ref|ZP_01047177.1| DNA methylase N-4/N-6 [Nitrobacter sp. Nb-311A]
 gi|85697035|gb|EAQ34918.1| DNA methylase N-4/N-6 [Nitrobacter sp. Nb-311A]
          Length = 513

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 98/326 (30%), Gaps = 78/326 (23%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + +I+G+++  L+ L       V  I+ DPPYN +   + Y  +      +   W +   
Sbjct: 39  NMLIQGDNLEALKALLPFYAGQVKCIYIDPPYNTRSAFEHYDDNLEHSQWLAMMWPRLEL 98

Query: 78  FEAYDA---------------FTRAWLLACRRVLKPNGT-LWV----------IGSYHNI 111
                A               + +  L       +   T +W           IG  H  
Sbjct: 99  LRDLLAEDGSIWVSIDDAEGSYMKVILDEIFGRSRFIATNVWQKRYSRENREAIGDVHEY 158

Query: 112 FRIGTMLQNLNFWILNDIVW-----------------RKSNPMPNFRGRRFQNAHET--- 151
             +  +         N I                   R        +G R    +     
Sbjct: 159 IYVYAINPESFKKQRNRIPPTEEQAKIYKNPNNDPKGRWRGIPMTAQGYRPNQMYAITTP 218

Query: 152 ---------------------------LIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
                                       IW       +     Y +              
Sbjct: 219 VGVVHRPPEGRCWSTIESEFEKLKARGRIWFGKDGTGQPNIIRYLSEVEGFVPWTWWPSD 278

Query: 185 LIPICSGSERLRNK--DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
            +     +++  +     E    T KPEAL+ RIL  +T PGD++LD F GSGT+ AVA 
Sbjct: 279 EVGHTDQAKKEMHGLLGREDAFGTPKPEALIQRILHIATNPGDLVLDSFLGSGTTAAVAH 338

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASV 268
           K  R +IGIEM +  +     R+  V
Sbjct: 339 KTGRRYIGIEMGEHSVTHCVPRLNKV 364


>gi|317178367|dbj|BAJ56155.1| fusion protein of dpnA and hopN [Helicobacter pylori F30]
          Length = 95

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/62 (53%), Positives = 46/62 (74%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPTQK  AL+ +I+   T P DI+LDPF GSGT+G   K+L+R+FIGIE +++Y  I+ K
Sbjct: 31  HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLKRNFIGIESEKEYFQISKK 90

Query: 264 RI 265
           R+
Sbjct: 91  RL 92


>gi|332674142|gb|AEE70959.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori 83]
          Length = 112

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/62 (53%), Positives = 45/62 (72%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPTQK   L+ +I+   T P DI+LDPF GSGT+G   K+L+R+FIGIE +++Y  IA K
Sbjct: 48  HPTQKSLTLMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLKRNFIGIESEKEYFQIAKK 107

Query: 264 RI 265
           R+
Sbjct: 108 RL 109


>gi|153868265|ref|ZP_01998283.1| methyltransferase [Beggiatoa sp. SS]
 gi|152144415|gb|EDN71717.1| methyltransferase [Beggiatoa sp. SS]
          Length = 191

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/110 (30%), Positives = 63/110 (57%), Gaps = 4/110 (3%)

Query: 162 KGYTFNYDALKAANEDVQMRSDWLI----PICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
           K + FN D ++   +  + R++        + + S      +  + HPTQKPE L+ R++
Sbjct: 6   KEFIFNLDEIRVPQKYYRERNNMRGANPGDVWTFSHVHYCHENRQNHPTQKPEGLIERMI 65

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           ++S+  G  +LDPF GSGT+  V ++L R+ IGIE+  +Y+ ++ +R+  
Sbjct: 66  LASSHEGAQVLDPFLGSGTTLRVCQQLNRACIGIELNPNYVKMSQERLQK 115


>gi|9634640|ref|NP_038314.1| ORF13 [Streptococcus phage 7201]
 gi|7248470|gb|AAF43506.1|AF145054_14 ORF13 [Streptococcus phage 7201]
          Length = 250

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 93/243 (38%), Gaps = 34/243 (13%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS---FEAYDAF-TRAWLLACRRV 95
             LI AD PYNL  N     P      +  +   K +    FE  + F    +   C R+
Sbjct: 22  AQLIIADIPYNLGSNAYASDPRWYKDGSNENGESKLAGKSFFETDNDFKINNFFDFCARL 81

Query: 96  LKPN----G---TLWVIGSYHNIFRIGTMLQNLNFWILNDIVW-RKSNPMPNFRGRRFQN 147
           LK      G    + V  S+     +    +   F     + + +K++P       +   
Sbjct: 82  LKKEPKEKGQAPAMIVFHSWQQREMVIQCGKKHGFNNAYPLYFTKKTSPQVLKANMKIVG 141

Query: 148 AHE--TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
           A E  T+++    P      FN +     N     +               +     +HP
Sbjct: 142 ATEEATVLYRDKLP-----KFNNNGAMVLNHMPWEK---------------DSSYPTIHP 181

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           TQKP  +L R++   T P D+++DP  GSG++   A ++ R+  G E+K+++   A   +
Sbjct: 182 TQKPIPVLKRLIELFTDPEDVVIDPVAGSGSTIRAAVEMNRNAYGFEIKKEFYKKAQSEM 241

Query: 266 ASV 268
            S 
Sbjct: 242 LST 244


>gi|148827567|ref|YP_001292320.1| hypothetical protein CGSHiGG_04970 [Haemophilus influenzae PittGG]
 gi|148718809|gb|ABQ99936.1| hypothetical protein CGSHiGG_04970 [Haemophilus influenzae PittGG]
          Length = 243

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 91/237 (38%), Gaps = 28/237 (11%)

Query: 39  SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD--------AFTRAWLL 90
              L+ AD PYNL  N     P+  +     +     ++   +D         F      
Sbjct: 20  KAQLVIADIPYNLGNNAYASNPEWYVNGDNKNGESDKANSSFFDTDKDFRIAEFMHFCSK 79

Query: 91  ACRRVLKPNG---TLWVIGSYHNIFRIGTMLQNLNFWILNDIVW-RKSNPMPNFRGRRFQ 146
              +  K  G    + V  ++  I  +    +   F     +V+ + S+P       +  
Sbjct: 80  MLIKEPKERGKAPCMIVFCAFQQISMVIDYAKQHGFKNHIPLVFIKSSSPQVLKANMKVV 139

Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
            A E  +        K            N + +M  +W        E+   K+  KLHPT
Sbjct: 140 GATEYALILYRDKLPK-----------FNNNGKMIKNWFE-----WEKDNRKEIPKLHPT 183

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           QKP A+L R++   T  GD+++DP  GS ++   A++L R   G E+K+D   IA +
Sbjct: 184 QKPIAVLKRLIEIFTDEGDVVIDPVAGSASTLRAARELNRPSYGFEIKKDSCKIAKR 240


>gi|254509635|ref|ZP_05121702.1| DNA methylase N-4/N-6 domain protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221533346|gb|EEE36334.1| DNA methylase N-4/N-6 domain protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 481

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 82/188 (43%), Gaps = 17/188 (9%)

Query: 187 PICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
            + +   +L N+  E   +PTQKPE L+ RI+  +T PGD++LD F GSGTS A A K  
Sbjct: 147 DLWTDINKLHNRSPEATGYPTQKPEKLIERIIACTTDPGDLVLDFFVGSGTSAAAAYKTG 206

Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR-VAF------NLLVERGL 298
           R ++  ++    I+   KR+  ++     + T+   +    R   F      N  + R  
Sbjct: 207 RRYLAADINLGAIETTIKRLNLLREAECDQKTLKDLELGAKRFTGFELYNVNNYDIFRNP 266

Query: 299 IQPGQILTNAQGNISATVCADGTLISGT------ELGSIHRVGAKVSGSETCNGWNFWYF 352
           ++  +++  A   +        ++  G       ++  ++R+      +E   G +F  +
Sbjct: 267 VEAKELIKEA---MELQPLPTNSVFDGQRDQFLVKIMPVNRIATCQDLNEVIAGMDFKAY 323

Query: 353 EKLGELHS 360
           E+      
Sbjct: 324 ERRQAEAP 331


>gi|170765736|ref|ZP_02900547.1| DNA methylase [Escherichia albertii TW07627]
 gi|170124882|gb|EDS93813.1| DNA methylase [Escherichia albertii TW07627]
          Length = 195

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/160 (28%), Positives = 78/160 (48%), Gaps = 18/160 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II+G+++  L+K+PA SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIQGDALCELKKMPAASVDLIFADPPYNIGKN----------FDGMVENWKE----DQF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  +    + L F I + I+W   +     R
Sbjct: 62  IDWLLEVIAECHRVLKKQGSMYIMNSTENMPFVDLYCRKL-FTIKSRIIWSYDSSGVQAR 120

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
                + +E ++       AK YTFN DA+    +    R
Sbjct: 121 KYYG-SMYEPILMMVK--DAKNYTFNSDAILVEAKTGARR 157


>gi|118576466|ref|YP_876209.1| DNA modification methylase [Cenarchaeum symbiosum A]
 gi|118194987|gb|ABK77905.1| DNA modification methylase [Cenarchaeum symbiosum A]
          Length = 259

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 91/247 (36%), Gaps = 35/247 (14%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
            + +  LE     S   +  DP YN  + G  +                      YD + 
Sbjct: 39  ADVLETLESARDASA--VILDPWYNRGVGGVRHN---------------------YDEWL 75

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
              +     V      ++V G    + R+   L      +   I W   N     RG R 
Sbjct: 76  GTVVDRSFDVAD---HVYVWGFPQIVCRVLDKL-PPKTELTAWITWYYKNCPSMIRGWR- 130

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN-----KDG 200
            +A  T +  S    A+ Y  N+   +      + +  ++    S  E   N     +  
Sbjct: 131 -SAQYTCLHLSRDG-ARLYPENFMTEEQQERYREGKMRYIPGPPSVLEVPLNIGFVGRGE 188

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +  HP QKP   +  ++  S+K GD+++DP  GSGT+G V   L R  +  +M ++Y  +
Sbjct: 189 QTGHPAQKPLKTIEPLVKMSSKEGDLVIDPMCGSGTTGVVCNMLNRKAVLCDMSEEYTAL 248

Query: 261 ATKRIAS 267
           A KR+  
Sbjct: 249 ARKRVLE 255


>gi|110668023|ref|YP_657834.1| site-specific DNA-methyltransferase [Haloquadratum walsbyi DSM
           16790]
 gi|109625770|emb|CAJ52205.1| site-specific DNA-methyltransferase [Haloquadratum walsbyi DSM
           16790]
          Length = 516

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 102/294 (34%), Gaps = 84/294 (28%)

Query: 26  GNSISVLEKL-----PAK-SVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           G+S  + + L     PA+  VD I   PPY +LQ  G+            TD       +
Sbjct: 12  GDSRKLQQTLSKKGAPAEPYVDAIITSPPYADLQKYGE------------TDDQIGEQEY 59

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSY--------HNIFRIGTMLQNL--------- 121
           EA+ +  +A    C  +   + TLW+               F I   L+NL         
Sbjct: 60  EAFLSDIKAVFQQCYNISTADSTLWINTDTFRRDGRLVRLPFDIADDLENLPELKNCTTD 119

Query: 122 -----------------------------NFWILNDIVWRKSNPMPNFRGRRFQNAHETL 152
                                        ++ + + I+W K    P +   + +N +E +
Sbjct: 120 SCTGQLQVDRGNGVYQCDTCGRRVDPLEKSWRLADHIIWDKKRTRPWYAEGKLRNVYEHV 179

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSD---------------WLIPICSGSERLRN 197
              S   + K Y  +        +  +   D               W  PI    +    
Sbjct: 180 SMYSKEAEFK-YNVDSVRETDPEKFGRWWVDYPERYNPSGKVPNNLWSFPIPKQGQW--- 235

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
                 HP+  P  L+SRI+  +T PGD ILDPF G GT+ AVAK L R  IG 
Sbjct: 236 GPKLAYHPSPFPPGLISRIIKLATDPGDTILDPFAGVGTTLAVAKALNRKVIGF 289


>gi|126011082|ref|YP_001039907.1| putative N-6 adenine-specific DNA methylase [Streptococcus phage
           phi3396]
 gi|124389351|gb|ABN10793.1| putative N-6 adenine-specific DNA methylase [Streptococcus phage
           phi3396]
          Length = 224

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 89/247 (36%), Gaps = 36/247 (14%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
             + + ++ + P K  +L   DPPY      + Y         V   + K S    +   
Sbjct: 6   NEDCMQLMSRYPDKYFELAIVDPPYFSGPEKRNYYGRKVSPIGVKRLYGKTS---EWHVP 62

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
              +     RV K    +W +  Y   F                IVW K N   +F    
Sbjct: 63  DEKYFDELFRVSKNQ-IIWGVNYYDYHFS------------SGRIVWDKVNGQSSF---- 105

Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK--DGEK 202
              +   + + S     + + + ++ +                I  G  +  NK  +  +
Sbjct: 106 ---SDCEIAYCSFYDSVRLFRYMWNGMMQGK-----------SISEGHLQQGNKSLNEVR 151

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +HPTQKP  L   +L +  K GD ILD   GS +S    ++L   ++G E+      +A+
Sbjct: 152 IHPTQKPVNLYLWLLQNYAKDGDKILDTHVGSASSLIACEELGFDYVGCELDSGIYTLAS 211

Query: 263 KRIASVQ 269
           +R+   +
Sbjct: 212 ERLNKYK 218


>gi|308273677|emb|CBX30279.1| Putative type III restriction-modification system HindVIP enzyme
           mod [uncultured Desulfobacterium sp.]
          Length = 616

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 104/308 (33%), Gaps = 75/308 (24%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       V LI+ DPP+N + +   Y              +   S
Sbjct: 180 NLIIKGNNLLALHTLKKQFRGKVKLIYIDPPFNTERDSFTY--------------NDSFS 225

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSN 135
              +  F R  LLA    L  +G + V    +    +  +L  +      +N+I+W K  
Sbjct: 226 HSTWLTFMRNRLLAAHEFLTKDGNIIVHIDNNESHYLKILLDEIFGRTNFVNEIIWHKGR 285

Query: 136 ------------PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
                        MP      F  A E  I     P    Y  +       +E     + 
Sbjct: 286 EGGSSRSHSASSSMPTEYQNIFVYAKEKSIRYWSLPL-GPYKKSTIGGIDKDEKGWFYTR 344

Query: 184 WLIPICSGSERLRNKDG------------------------------------------- 200
             +        L  K G                                           
Sbjct: 345 GRMSRTPAEWELAEKAGLKTYVSDRIDLEKSEVIKLITASDAKYVALGDVWGNDFIKNTK 404

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           E  + T KPE LL  I+ ++T+P DI+LD F GSGT+ AV  KL R  IGIE     ++I
Sbjct: 405 EADYDTSKPEGLLKIIIEAATQPKDIVLDFFLGSGTTAAVTIKLNRQCIGIEQLSGGMNI 464

Query: 261 ATKRIASV 268
              R+  V
Sbjct: 465 LLPRLKEV 472


>gi|163868337|ref|YP_001609546.1| methyltransferase [Bartonella tribocorum CIP 105476]
 gi|161017993|emb|CAK01551.1| methyltransferase [Bartonella tribocorum CIP 105476]
          Length = 546

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 67/329 (20%), Positives = 113/329 (34%), Gaps = 81/329 (24%)

Query: 19  WKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPD-------------- 61
           + +K+I G+++  L+ L  +    V  I+ DPPYN     + Y                 
Sbjct: 46  FDNKLIFGDNLLALKALEQEYTGKVKCIYIDPPYNTGNAFEHYEDGLEHSIWLSLMRDRL 105

Query: 62  ---HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR-RVLKPNGTLWV----------IGS 107
              H L+      W      E   A+ +  +     R    N  +W             S
Sbjct: 106 ELLHHLLADDGSIWISIDDDEQ--AYLKVMMDEIFGRQNFINNIIWQKKYAPQNDTKWFS 163

Query: 108 YHNIFRIGTMLQNLNFWIL-----NDIVWRKSNPMPNFRGRRF-----------QNAHET 151
            ++ F +        +        + +  R  NP  + RG              ++ +E 
Sbjct: 164 DNHDFIMVYAKDKTIWRPYLLPRSSAMDARYKNPDNDPRGPWKPGDLSVKRVTLKDIYEI 223

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP-----------------------I 188
           +  +              + K  +E ++    W  P                       I
Sbjct: 224 VTPSGRKVMPPHGRSWAMSEKKFSELLKDNRIWFGPTGSNIPSLKRFLSEVKNGMVSMTI 283

Query: 189 CSGSERLRNKDGEK---------LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
              +E   N+D ++         +  T KPE L+ RI+  +T PGD+ILD F GSGT+GA
Sbjct: 284 WPYTEVGHNQDAKREVKAFNSDHVFTTPKPERLMERIIQLATTPGDLILDSFAGSGTTGA 343

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           VA K+ R +I IE+ +        R+  V
Sbjct: 344 VAHKMGRRWIMIELGEHCHTHIIPRLKQV 372


>gi|255103333|ref|ZP_05332310.1| putative site-specific DNA-methyltransferase [Clostridium difficile
           QCD-63q42]
 gi|255652441|ref|ZP_05399343.1| putative site-specific DNA-methyltransferase [Clostridium difficile
           QCD-37x79]
          Length = 269

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 53/268 (19%), Positives = 98/268 (36%), Gaps = 43/268 (16%)

Query: 22  KIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           ++     + +++ L  K   VD I AD P                     ++WDK     
Sbjct: 8   ELYNDECLKIMDTLIEKNVKVDAIIADIP----------------QGITKNNWDKP---- 47

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
              AF   W    +     N  + +    +  F    +  N   + +    W K  P   
Sbjct: 48  --LAFNAMWDRLYKLRRNKNTPIILFT--NQPFTSKLICSNDKHFKIMK-YWEKDRPSGF 102

Query: 140 FRGRRF--QNAHETLIWASPSPKAKGYTF---NYDALKAANEDVQMRSDWLIPICSGSER 194
              +R   +N  E  I+    P             ++   N + + +++      +  ER
Sbjct: 103 LNAKRMPLKNVEEIAIFYEKPPVYNPQMIVGKPSHSIGKVNGESKCKNNNNYGNFARVER 162

Query: 195 LRN-----------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
             N           +    +HPT+KP  LL  ++++ +  GD+ILD   G  ++G  A +
Sbjct: 163 EGNLKYPKQILKYSRPHPPIHPTEKPVPLLKDLIMTYSNEGDVILDFTAGVISTGVAALE 222

Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPL 271
             R FIGIE+ ++  +   KR+ + + L
Sbjct: 223 TNRRFIGIELNEESFNKGVKRMRNTESL 250


>gi|29566483|ref|NP_818049.1| gp76 [Mycobacterium phage Che9d]
 gi|29425208|gb|AAN07994.1| gp76 [Mycobacterium phage Che9d]
          Length = 224

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 84/251 (33%), Gaps = 41/251 (16%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + +  +  G+ + + E L     D++  DPPY  +   Q     H   +      D  + 
Sbjct: 7   DDRVTLYHGDCLEITEWLA---ADVLVTDPPYG-RDWKQGELKGHFTANRSGIQNDSSTD 62

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
              Y    + W          +    V G       I           +       +  +
Sbjct: 63  TRDYA--LQLW---------GDRQAIVFGDLMLAPPI-------GTKHVLVYRKPSNAGL 104

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
               G   ++A    +         G   +  A  AA                       
Sbjct: 105 RGAVGGYRRDAEAVYLIGPGHGSGIGGESSVIATSAAMMGGST----------------G 148

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
             G   HP +KP  +L R+L S++    ++ DPF GSG++   A+ L R  IG+E+++ Y
Sbjct: 149 LGGRTGHPHEKPLDVLERLLDSTS---GVVADPFAGSGSTLVAARNLGRRAIGVELEERY 205

Query: 258 IDIATKRIASV 268
            +I  +R+  +
Sbjct: 206 CEIIARRLDQM 216


>gi|53713761|ref|YP_099753.1| putative methylase [Bacteroides fragilis YCH46]
 gi|253566235|ref|ZP_04843689.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|52216626|dbj|BAD49219.1| putative methylase [Bacteroides fragilis YCH46]
 gi|251945339|gb|EES85777.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|301164556|emb|CBW24115.1| putative DNA methylase [Bacteroides fragilis 638R]
          Length = 251

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 88/243 (36%), Gaps = 34/243 (13%)

Query: 39  SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD--------AFTRAWLL 90
              LI AD PYNL  N     P   +     +     +  E +D         F      
Sbjct: 21  KAQLIIADVPYNLGNNAYASNPSWYVDGDNKNGESDLAGKEFFDTDKDFRPAEFMHFCSQ 80

Query: 91  ACRRVLKPNG---TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF-- 145
              +  K  G    + +   + + FR   + +        ++V+RK       +      
Sbjct: 81  MLMKEPKEKGKAPCMIIFCEFEDQFRYIELGKRYGLNNYINLVFRKDFSAQVLKANMKIV 140

Query: 146 -QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
               +  L++    P      FN D     N       DW+    +           K+H
Sbjct: 141 GNCEYGLLLYRDKLP-----KFNNDGRMIFN-----CFDWVRDGETP----------KVH 180

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PTQKP  LL R++   T  GD+++DP  GSG++   A +L R   G E+K+ +   A K 
Sbjct: 181 PTQKPVPLLRRLIEIFTDKGDVVIDPCAGSGSTLLAAAQLGRKAYGFEIKKQFFADANKL 240

Query: 265 IAS 267
           I S
Sbjct: 241 ILS 243


>gi|167757963|ref|ZP_02430090.1| hypothetical protein CLOSCI_00299 [Clostridium scindens ATCC 35704]
 gi|167664395|gb|EDS08525.1| hypothetical protein CLOSCI_00299 [Clostridium scindens ATCC 35704]
          Length = 281

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 90/250 (36%), Gaps = 26/250 (10%)

Query: 40  VDLIFADPPYNLQ----------LNGQLYRPDHSLVDAVTDSWDKFS-SFEAYDAFTRAW 88
             L+ AD PYN+            NG   R   S +         F+ +   Y  F    
Sbjct: 24  AQLVIADVPYNVGNNFYGSNPMWYNGGDNRNGESRLAGKAAFNSDFNFNLYEYFHFCSKM 83

Query: 89  LLACRRVLKPNGT------LWVIGSYHNIFRIGTMLQNLNF-WILNDIVWRKSNPMPNFR 141
           L    +     G       + V  S+  I  +    +   F   +  +  +  +P     
Sbjct: 84  LKRDDKKPVRRGRSSDSPCMIVFCSFEQIQTLIKAAEKHGFVHYIPLVFCKNYSPQVLKA 143

Query: 142 GRRFQNAHET--LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
             R   A E   L++    PK +    + +  K       M  +W +           KD
Sbjct: 144 NMRIVGATEYALLLYRDRLPKFRNGVKSDENGKTIPGTGHMVFNWFM------WERDGKD 197

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
             K+HP QK   +L +++ + T PGD+++DP  GSG +   A +L R+  G E+ + +  
Sbjct: 198 VPKIHPAQKSVKVLKKLIETFTDPGDVVIDPCCGSGATLRAAHELGRNAFGFEIDRTFYR 257

Query: 260 IATKRIASVQ 269
            A   +   +
Sbjct: 258 RAKNEMLKFE 267


>gi|254180442|ref|ZP_04887040.1| DNA methylase [Burkholderia pseudomallei 1655]
 gi|184210981|gb|EDU08024.1| DNA methylase [Burkholderia pseudomallei 1655]
          Length = 303

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 73/193 (37%), Gaps = 24/193 (12%)

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            +  AWL  CRR LKP G L     +  +  +  ++Q     +    VW K+      R 
Sbjct: 131 DWCHAWLSECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLTLRGVAVWDKTLGRMRLRR 190

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
             F    E ++WAS         +                   +P+             K
Sbjct: 191 GGFAQQAEFVVWASRGAMRGCDVYLPGVFPC-----------RLPLP------------K 227

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            H T+KP   ++R +V     G ++ D F GSGT  A A++    ++G E  Q Y  I++
Sbjct: 228 QHVTEKPLD-IAREVVRLMPAGVVVCDLFAGSGTFLAAAREAGLHWVGSETNQAYHAISS 286

Query: 263 KRIASVQPLGNIE 275
            R+ +      ++
Sbjct: 287 ARLDATTDDSGVQ 299


>gi|254510701|ref|ZP_05122768.1| DNA methylase [Rhodobacteraceae bacterium KLH11]
 gi|221534412|gb|EEE37400.1| DNA methylase [Rhodobacteraceae bacterium KLH11]
          Length = 386

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 75/209 (35%), Gaps = 52/209 (24%)

Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK---------- 162
           R    +Q   +W+ ++I+W K NPMP     R   +HE +   +   +            
Sbjct: 160 RFAIAMQEWGWWVRSEIIWAKPNPMPESIKDRPATSHEKIFMFTKEGRYDYDAQAVRTGR 219

Query: 163 -----------------------------------------GYTFNYDALKAANEDVQMR 181
                                                    G+  ++DA+    +    R
Sbjct: 220 KSDEDANGFRGGSYVGGKPGARTAVGNKKTDKQRGHSRRHAGFNDHWDAMSKEEQQSNGR 279

Query: 182 SDWLI-PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           +     P       +  +  ++ H    P  L+ R L +    G  +LDPF G+GT+G V
Sbjct: 280 NLRNYEPAPVQVWEIATRPFKEAHFATFPPELVERCLKAGCPQGGKVLDPFGGAGTTGLV 339

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           A +L+     IE+  +Y DIA +RI S Q
Sbjct: 340 ADRLQMDATLIELNPEYADIAIRRIESDQ 368



 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 67/246 (27%), Gaps = 48/246 (19%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++++G+ + +L  LP    D +   PPY    +             V        +   +
Sbjct: 5   RVLQGDVLDMLATLPDDHFDCVVTSPPYWGLRDY-----------GVEGQIGLEPTLAEH 53

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSY--------HNIFRIGTMLQNLNFWILNDI---- 129
                       RVL P GT WV                       +   +         
Sbjct: 54  LDVMVRVFAEVHRVLNPTGTCWVNYGDCYATAPNGRTAADTKAAGNDDRTFRDKPFSTVG 113

Query: 130 -VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
            +    +P    RG+  +NA       S    + GY    D +   N       +W    
Sbjct: 114 PICADGSPSSTTRGQNGKNAKGQT-GNSKRIMSGGYLKPKDLVMVPNRFAIAMQEW--GW 170

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRI------LVSSTKPGDIILDPFFGSGTSGAVAK 242
              SE +  K      P   PE++  R       +   TK G    D         A A 
Sbjct: 171 WVRSEIIWAK------PNPMPESIKDRPATSHEKIFMFTKEGRYDYD---------AQAV 215

Query: 243 KLRRSF 248
           +  R  
Sbjct: 216 RTGRKS 221


>gi|19745777|ref|NP_606913.1| hypothetical protein spyM18_0742 [Streptococcus pyogenes MGAS8232]
 gi|94990072|ref|YP_598172.1| adenine-specific methyltransferase [Streptococcus phage 10270.1]
 gi|94993984|ref|YP_602082.1| Adenine-specific methyltransferase [Streptococcus phage 10750.1]
 gi|19747918|gb|AAL97412.1| hypothetical phage protein [Streptococcus pyogenes MGAS8232]
 gi|94543580|gb|ABF33628.1| Adenine-specific methyltransferase [Streptococcus phage 10270.1]
 gi|94547492|gb|ABF37538.1| Adenine-specific methyltransferase [Streptococcus phage 10750.1]
          Length = 262

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 95/243 (39%), Gaps = 34/243 (13%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS---FEAYDAF-TRAWLLACRRV 95
             LI AD PYNL  N     P      +  +   K +    F+  + F    +   C R+
Sbjct: 34  AQLIIADIPYNLGNNAYASDPRWYENGSNKNGESKLAGKSFFDTDNDFKINNFFDFCSRL 93

Query: 96  L----KPNG---TLWVIGSYHNIFRIGTMLQNLNFWILNDIVW-RKSNPMPNFRGRRFQN 147
           L    K  G    + V  ++     +    +   F     + + +KS+P       +   
Sbjct: 94  LRKEPKEKGKAPAMIVFHAWQQRELVIACGKKHGFNNAYPLYFTKKSSPQVLKANMKIVG 153

Query: 148 AHE--TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
           A E  T+++    P      FN       N     + D   P+              +HP
Sbjct: 154 AVEEATVLYRDKLP-----KFNNGGAMILNHAPWEK-DSSYPV--------------IHP 193

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           TQKP  +L R++   T P D+++DP  GSG++   A ++ R+  G E+K+D+   A + +
Sbjct: 194 TQKPIPVLKRLIEIFTDPDDVVIDPVAGSGSTIRAAIEMNRNAYGFEIKKDFYKRAKEEM 253

Query: 266 ASV 268
            S 
Sbjct: 254 LST 256


>gi|319957548|ref|YP_004168811.1| DNA methylase n-4/n-6 domain protein [Nitratifractor salsuginis DSM
           16511]
 gi|319419952|gb|ADV47062.1| DNA methylase N-4/N-6 domain protein [Nitratifractor salsuginis DSM
           16511]
          Length = 263

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 87/240 (36%), Gaps = 33/240 (13%)

Query: 40  VDLIFADPPYNLQLNGQLYRP----DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRV 95
             L+ AD PYNL  N     P    D    +  +    K      Y+     +   C ++
Sbjct: 37  AQLVIADIPYNLGNNAYASNPMWYKDGDRKNGESKKAGKAFFNSDYNFNIAEFFHFCSKL 96

Query: 96  L----KPNG---TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF--- 145
           L    K  G    + V  ++  I  I    +   F     + + K+      +       
Sbjct: 97  LIKEPKEAGKAPCMIVFCAFEQIPSIVEYAKKHGFKNSIPLFFIKNYSAQVLKANMRIVG 156

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
              H  +++    P      FN       N     R    IP              K+HP
Sbjct: 157 ATEHAVILYRDKLP-----KFNNRGRMIYNWMEWRRDGKEIP--------------KIHP 197

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           TQKP  LL+ ++   T  GD ++DP  GSG++     +L R+  G E+ +D   +AT+++
Sbjct: 198 TQKPVNLLAHLVQLFTDEGDTVIDPVAGSGSTLRACFELNRNGYGFEVSRDMYRLATEKM 257


>gi|319896754|ref|YP_004134948.1| DNA methylase [Haemophilus influenzae F3031]
 gi|317432257|emb|CBY80609.1| DNA methylase [Haemophilus influenzae F3031]
          Length = 245

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 95/242 (39%), Gaps = 28/242 (11%)

Query: 39  SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD--------AFTRAWLL 90
              L+ AD PYNL  N     P+  +     +     ++   +D         F      
Sbjct: 20  KAQLVIADIPYNLGNNAYASNPEWYVNGDNKNGESDKANSSFFDTDKDFRIAEFMHFCSK 79

Query: 91  ACRRVLKPNG---TLWVIGSYHNIFRIGTMLQNLNFWILNDIVW-RKSNPMPNFRGRRFQ 146
              +  K  G    + V  ++  I  +    +   F     +V+ + S+P       +  
Sbjct: 80  MLIKEPKERGKAPCMIVFCAFQQISMVIDYAKQHGFKNHIPLVFIKSSSPQVLKANMKVV 139

Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
            A E  +        K            N + +M  +W        E+   K+  KLHPT
Sbjct: 140 GATEYALILYRDKLPK-----------FNNNGKMIKNWFE-----WEKDNRKEIPKLHPT 183

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           QKP A+L R++   T  GD+++DP  GS ++   A++L R   G E+K+D   IA +++ 
Sbjct: 184 QKPIAVLKRLIEIFTDEGDVVIDPVAGSASTLRAARELYRPSYGFEIKKDSCKIAKEQML 243

Query: 267 SV 268
           ++
Sbjct: 244 NI 245


>gi|139473507|ref|YP_001128223.1| phage DNA methylase [Streptococcus pyogenes str. Manfredo]
 gi|134271754|emb|CAM29987.1| phage DNA methylase [Streptococcus pyogenes str. Manfredo]
          Length = 254

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 57/243 (23%), Positives = 95/243 (39%), Gaps = 34/243 (13%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS---FEAYDAF-TRAWLLACRRV 95
             LI AD PYNL  N     P      +  +   K +    F+  + F    +     R+
Sbjct: 26  AQLIIADIPYNLGTNAYASDPRWYEKGSNKNGESKLAGKSFFDTDNDFKINNFFGFSARL 85

Query: 96  LKPN----G---TLWVIGSYHNIFRIGTMLQNLNFWILNDIVW-RKSNPMPNFRGRRFQN 147
           LK      G    + V  S+     +    +   F     + + +KS+P       R   
Sbjct: 86  LKKEPKEKGKAPAMIVFHSWQQREMVIQCGKKHGFKKAYPLYFIKKSSPQALKANMRIVG 145

Query: 148 AHE--TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
           A E  T+++    P      FN +     N     + D   P+              +HP
Sbjct: 146 AVEEATVLYRDKLP-----KFNNNGAMVLNHLPWEK-DSSYPV--------------IHP 185

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           TQKP  +L R++   T P D+++DP  GSG++   A ++ R+  G E+K+D+   A + +
Sbjct: 186 TQKPIPVLKRLIEIFTDPDDVVIDPVAGSGSTIRAAIEMNRNAYGFEIKKDFYKRAKEEM 245

Query: 266 ASV 268
            S 
Sbjct: 246 LST 248


>gi|126661667|ref|ZP_01732677.1| hypothetical protein CY0110_09335 [Cyanothece sp. CCY0110]
 gi|126617047|gb|EAZ87906.1| hypothetical protein CY0110_09335 [Cyanothece sp. CCY0110]
          Length = 226

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 20/144 (13%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KF 75
            ++ ++II+G+ + +L++LP KS+DLI  DPPY                  +   WD ++
Sbjct: 1   MKYLNQIIQGDCLEILQELPDKSIDLIILDPPY---------------WKVIQQKWDYQW 45

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS- 134
            + E Y  +   WL    RV+K +G+L++ G   N+F +   + +L F     I+  K  
Sbjct: 46  RTEEDYKQWCLQWLPEISRVIKLSGSLYLFGYLRNLFYLYEPIIDLGFNFRQQIIINKGM 105

Query: 135 ---NPMPNFRGRRFQNAHETLIWA 155
              +       + F N  E+L++ 
Sbjct: 106 KAISGRATKNYKMFPNVTESLLFF 129


>gi|260174933|ref|ZP_05761345.1| putative methylase [Bacteroides sp. D2]
 gi|315923173|ref|ZP_07919413.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313697048|gb|EFS33883.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 251

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 53/239 (22%), Positives = 84/239 (35%), Gaps = 34/239 (14%)

Query: 39  SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD--------AFTRAWLL 90
              LI AD PYNL  N     P   +     +     +  E +D         F      
Sbjct: 21  KAQLIIADVPYNLGNNAYASNPSWYVDGDNKNGESDKAGKEFFDTDKDFRPAEFMHFCSQ 80

Query: 91  ACRRVLKPNG---TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF-- 145
              +  K       + +   + + FR   + +        ++V+RK       +      
Sbjct: 81  MLVKEPKDKAKAPCMIIFCEFEDQFRYIELGKRYGLNNYINLVFRKDFSAQVLKANMKVV 140

Query: 146 -QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
               +  L +    P      FN D     N    +R +               D  K+H
Sbjct: 141 GNCEYGLLFYREKLP-----KFNNDGRMIFNCFDWVRDN---------------DTPKIH 180

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           PTQKP  LL R++   T  GD+++DP  GSG++   A +L R   G E+K+ +   A K
Sbjct: 181 PTQKPVPLLRRLIEIFTDKGDVVIDPCAGSGSTLLAAAQLGRRAYGFEIKKKFFADANK 239


>gi|224535546|ref|ZP_03676085.1| hypothetical protein BACCELL_00410 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522836|gb|EEF91941.1| hypothetical protein BACCELL_00410 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 251

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 87/239 (36%), Gaps = 34/239 (14%)

Query: 39  SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD--------AFTRAWLL 90
              LI AD PYNL  N     P   +     +     +  E +D         F      
Sbjct: 21  KAQLIIADVPYNLGNNAYASNPSWYVDGDNKNGESDKAGKEFFDTDKDFRPAEFMHFCSQ 80

Query: 91  ACRRVLKPNG---TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF-- 145
              +  K  G    + +   + + FR   + +        ++V+RK       +      
Sbjct: 81  MLMKEPKEKGKAPCMIIFCEFEDQFRYIDLGKRYGLNNYINLVFRKDFSAQVLKANMKVV 140

Query: 146 -QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
               +  L++    P      FN D     N       DW+    +           K+H
Sbjct: 141 GNCEYGILLYRDKLP-----KFNNDGRMIFN-----CFDWVRDGETP----------KIH 180

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           PTQKP  LL R++   T  GD+++DP  GSG++   A +L R   G E+K+D+   A +
Sbjct: 181 PTQKPVPLLRRLIEIFTDKGDVVIDPCAGSGSTLLAAAQLGRKGYGFEIKKDFFREANR 239


>gi|309785587|ref|ZP_07680218.1| uncharacterized adenine-specific methylase yhdJ domain protein
           [Shigella dysenteriae 1617]
 gi|308926707|gb|EFP72183.1| uncharacterized adenine-specific methylase yhdJ domain protein
           [Shigella dysenteriae 1617]
          Length = 200

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 85/188 (45%), Gaps = 20/188 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+KLP +SV+LIFADPPYN+  N           D + ++W +      +
Sbjct: 16  TIIHGDALAELKKLPTESVNLIFADPPYNIGKN----------FDGLIEAWKE----ALF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    +  C RVLK  G+++++ S  N+  I    + L F I + IVW   +      
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKL-FTIKSRIVWSYDSSGVQ-A 119

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
            + + + +E ++       AK YTFN DA+    +    R+  LI       +  N    
Sbjct: 120 KKHYGSMYEPILMMVK--DAKNYTFNGDAILVEAKTGSQRT--LIDYRKNPPQPYNHQKV 175

Query: 202 KLHPTQKP 209
             +    P
Sbjct: 176 PGNVWDFP 183


>gi|313143920|ref|ZP_07806113.1| LOW QUALITY PROTEIN: adenine specific DNA methyltransferase
           [Helicobacter cinaedi CCUG 18818]
 gi|313128951|gb|EFR46568.1| LOW QUALITY PROTEIN: adenine specific DNA methyltransferase
           [Helicobacter cinaedi CCUG 18818]
          Length = 191

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 64/156 (41%), Gaps = 3/156 (1%)

Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
           + T+ + + +   + I+W + N         + +A    + A        Y   +     
Sbjct: 27  LTTLAKQIGWKYHSTIIWNEGNISRRTAWGSWLSASAPYVIAPVELIVVLYKGAWKKKHK 86

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFF 232
              D+    +  +   +G      +  +++ HP   P  L  R +   +  GD++ DPF 
Sbjct: 87  GESDI--SKEEFMAWTNGLWSFNGESKKRIGHPAPFPRELPKRCIKLFSYVGDVVFDPFC 144

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           GSGT+   +    R FIGIE+ ++Y +++ KR    
Sbjct: 145 GSGTTMIESYLNNRQFIGIELDREYCELSKKRFLET 180


>gi|312962033|ref|ZP_07776530.1| DNA modification methylase [Pseudomonas fluorescens WH6]
 gi|311283843|gb|EFQ62427.1| DNA modification methylase [Pseudomonas fluorescens WH6]
          Length = 427

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 63/172 (36%), Gaps = 34/172 (19%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY---------------------- 58
            +I+ G+ I ++  LP  SVD +  DPPY ++  G+ +                      
Sbjct: 5   HQILVGDCIEMMRTLPDNSVDSVVTDPPYGIRFMGKSWDGQDIEARAAYRASMPSHAGAC 64

Query: 59  --RPDHSLVDAVTDSWD-KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
                H  + A    +D   +   A+ AFT  W   C RVLKP G L    +      + 
Sbjct: 65  GPNGGHRSIAAEAGKYDLTPAGMRAFQAFTLEWATECLRVLKPGGHLLSFAAARTYHHMA 124

Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN---------AHETLIWASPS 158
             ++   F I + I+W   +  P     + ++         AHE +  A   
Sbjct: 125 VGIEMSGFEIRDQIMWVFGSGFPKSHNLKGKHEGKGTALKPAHEPICMARKP 176



 Score = 93.1 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 38/63 (60%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPT KP  L++ +L   T PG + LDPF GSG++G  A +    FIG E+ + Y+ IA  
Sbjct: 343 HPTVKPTDLMAYLLRLVTPPGGVALDPFMGSGSTGKAAMREGFQFIGCEIDEQYVAIARA 402

Query: 264 RIA 266
           RI 
Sbjct: 403 RIE 405


>gi|323699610|ref|ZP_08111522.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio sp. ND132]
 gi|323459542|gb|EGB15407.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio desulfuricans
           ND132]
          Length = 242

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 57/247 (23%), Positives = 91/247 (36%), Gaps = 33/247 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I   ++   LE  P+   + I  DPP+ + + G+ +       D +              
Sbjct: 21  IHNDDAFLFLENCPSHRYEAIITDPPFEIGIAGKDWDCKKLRTDVLA------------- 67

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
                      RVLKP G ++V  S    F+ G   + L+ +      +    P      
Sbjct: 68  -------YQFYRVLKPGGNVFVFCSD---FQFGDWYRELSRYFTKLRKYAWCKPDSRSTN 117

Query: 143 RRF-QNAHETLIWASP---SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           +   Q + E  +           +G   NY      + + +M  D         E    K
Sbjct: 118 KGMFQESFELGLHVCSENSYFDKEGRYKNYVVAGKTSGNERMMPD------PDEEWSTKK 171

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
             + LHPTQK  +++  ++ + +K GD I DPF G+GT G  AK L R F  +E      
Sbjct: 172 GEKTLHPTQKKLSVIETLVTALSKEGDTIFDPFAGTGTLGVAAKNLGRKFEMVEYGFRNH 231

Query: 259 DIATKRI 265
             A  RI
Sbjct: 232 IAAWDRI 238


>gi|316997315|dbj|BAJ52764.1| type II DNA modification enzyme [Campylobacter lari]
          Length = 669

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 56/316 (17%), Positives = 115/316 (36%), Gaps = 72/316 (22%)

Query: 1   MSQKNSLAINENQNSIFEWKD-KIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQ 56
           +S++N   + ++  ++ E  + +++K ++   L  L  K    +DLI+ DPP+N      
Sbjct: 355 LSEENYYKLLQSFENLDEILNGELVKADNFQALNSLMPKYQGKIDLIYIDPPFNTG---- 410

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
                     +  D  DKF     + +     L   +  L   G+ ++    +  +    
Sbjct: 411 ----------SDFDYKDKFQD-STWLSLMHNRLELAKEFLSDKGSFYLHLDENADYFGRI 459

Query: 117 MLQNLNFWILNDIVWRKSNPMPN---------FRGRRFQNAHETLIW------------- 154
           +L      +    +   +N   +           G  F     T+++             
Sbjct: 460 LLNEFFGEMECKKITFDTNATKDEEADLFGYKSFGNNFVLKSSTILFLKKANSIFNKLWK 519

Query: 155 -----------------------ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
                                         + Y   +   K  +E + ++ + + P+   
Sbjct: 520 PNRNSSLLDLGQLDLIGISTIEAPKKITDYEYYIQKWKNGKLCHEKIDIKDEKIYPLGDI 579

Query: 192 SERLRN--------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
              L +         +    + +QKPE +L RI+ SS+    +++D F GSGT+ AV+ K
Sbjct: 580 WNDLYSFTQSEMRVSENISFYSSQKPENMLRRIIQSSSDENSVVMDFFVGSGTTLAVSHK 639

Query: 244 LRRSFIGIEMKQDYID 259
           L R +IGIEM + + +
Sbjct: 640 LNRKYIGIEMGEHFYE 655


>gi|306828378|ref|ZP_07461620.1| DNA (cytosine-5-)-methyltransferase [Streptococcus pyogenes ATCC
           10782]
 gi|304429428|gb|EFM32495.1| DNA (cytosine-5-)-methyltransferase [Streptococcus pyogenes ATCC
           10782]
          Length = 253

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 95/243 (39%), Gaps = 34/243 (13%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS---FEAYDAF-TRAWLLACRRV 95
             LI AD PYNL  N     P      +  +   K +    F+  + F    +   C R+
Sbjct: 25  AQLIIADIPYNLGNNAYASDPRWYENGSNKNGESKLAGKSFFDTDNDFKINNFFDFCSRL 84

Query: 96  L----KPNG---TLWVIGSYHNIFRIGTMLQNLNFWILNDIVW-RKSNPMPNFRGRRFQN 147
           L    K  G    + V  ++     +    +   F     + + +KS+P       +   
Sbjct: 85  LRKEPKEKGKAPAMIVFHAWQQRELVIACGKKHGFNNAYPLYFTKKSSPQVLKANMKIVG 144

Query: 148 AHE--TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
           A E  T+++    P      FN       N     + D   P+              +HP
Sbjct: 145 AVEEATVLYRDKLP-----KFNNGGAMILNHAPWEK-DSSYPV--------------IHP 184

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           TQKP  +L R++   T P D+++DP  GSG++   A ++ R+  G E+K+D+   A + +
Sbjct: 185 TQKPIPVLKRLIEIFTDPDDVVIDPVAGSGSTIRAAIEMNRNAYGFEIKKDFYKRAKEEM 244

Query: 266 ASV 268
            S 
Sbjct: 245 LST 247


>gi|316997329|dbj|BAJ52776.1| adenine-specific DNA methylase [Campylobacter lari]
          Length = 670

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 56/316 (17%), Positives = 115/316 (36%), Gaps = 72/316 (22%)

Query: 1   MSQKNSLAINENQNSIFEWKD-KIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQ 56
           +S++N   + ++  ++ E  + +++K ++   L  L  K    +DLI+ DPP+N      
Sbjct: 355 LSEENYYKLLQSFENLDEILNGELVKADNFQALNSLMPKYQGKIDLIYIDPPFNTG---- 410

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
                     +  D  DKF     + +     L   +  L   G+ ++    +  +    
Sbjct: 411 ----------SDFDYKDKFQD-STWLSLMHNRLELAKEFLSDKGSFYLHLDENADYFGRI 459

Query: 117 MLQNLNFWILNDIVWRKSNPMPN---------FRGRRFQNAHETLIW------------- 154
           +L      +    +   +N   +           G  F     T+++             
Sbjct: 460 LLNEFFGEMECKKITFDTNATKDEEADLFGYKSFGNNFVLKSSTILFLKKANSIFNKLWK 519

Query: 155 -----------------------ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
                                         + Y   +   K  +E + ++ + + P+   
Sbjct: 520 PNRNSSLLDLGQLDLIGISTIEAPKKITDYEYYIQKWKNGKLCHEKIDIKDEKIYPLGDI 579

Query: 192 SERLRN--------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
              L +         +    + +QKPE +L RI+ SS+    +++D F GSGT+ AV+ K
Sbjct: 580 WNDLYSFTQSEMRVSENISFYSSQKPENMLRRIIQSSSDENSVVMDFFVGSGTTLAVSHK 639

Query: 244 LRRSFIGIEMKQDYID 259
           L R +IGIEM + + +
Sbjct: 640 LNRKYIGIEMGEHFYE 655


>gi|119513181|ref|ZP_01632229.1| DNA methyltransferase [Nodularia spumigena CCY9414]
 gi|119462168|gb|EAW43157.1| DNA methyltransferase [Nodularia spumigena CCY9414]
          Length = 558

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/210 (23%), Positives = 88/210 (41%), Gaps = 14/210 (6%)

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           ++F+       +T  ++      +  +G  +  G   N            + +L+     
Sbjct: 177 NQFTWNPLKLPYTDEYIKQYYCNIDSDGRRFQFGDLTNTKTSRGYF----YKLLDCDPPD 232

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
               MP  R +++ +     I     P  K   +     + A + +    D + P+ S +
Sbjct: 233 NGWRMPESRAQQWLSEGRIAI----PPTGKTPRYKRYLDEVAGKGISDIWDDIPPVNSQA 288

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           +          +PTQKP++LL RI+  S+   DI+LDPF G GT+   A+KL R++IGI+
Sbjct: 289 KEALG------YPTQKPQSLLERIIQVSSNKDDIVLDPFCGCGTAIHAAEKLGRNWIGID 342

Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLTGK 282
           +    I +  KR+    P   IE    T K
Sbjct: 343 ITHLAIALIEKRLRDAFPSKFIEDENKTQK 372



 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 66/214 (30%), Gaps = 43/214 (20%)

Query: 22  KIIKGNSISVLEK-LPAKSVDLIFADPP------YNLQLNGQLYRPDHSLVDAVTDSW-- 72
           ++  G++++VL   +P + +DLI+ DPP      YN+           + + A  D+W  
Sbjct: 3   RLYYGDNLNVLRDHIPDEYIDLIYLDPPFNSKSNYNILFKNTTGERSEAQITAFEDTWTW 62

Query: 73  --------DKFS--------------------SFEAYDAFTRAWLLACRRVLKPNGTLWV 104
                   D+                      S  AY       L+   RVLK  G+L++
Sbjct: 63  SIESERFLDQIKHKKGELYQLLDLLVRTLGKNSLSAYLVMMAIRLIELHRVLKSTGSLYL 122

Query: 105 IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP------S 158
                    +  +L  +                 +   +++    + + +         +
Sbjct: 123 HCDTTASHYLKMILDLIFDARNYRNQITWKRTSSHSDAKKYARVTDIIFYYVKSNQFTWN 182

Query: 159 PKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           P    YT  Y      N D   R      + +  
Sbjct: 183 PLKLPYTDEYIKQYYCNIDSDGRRFQFGDLTNTK 216


>gi|159027337|emb|CAO90522.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 437

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 74/378 (19%), Positives = 133/378 (35%), Gaps = 79/378 (20%)

Query: 21  DKIIKGNSISVLEKLP-----AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW--- 72
           +++   ++++VL  L      +  V L++ DPP+    + +  + +H+  D +       
Sbjct: 57  NRLYHADNLAVLAALARDEAVSGKVKLVYIDPPFATASSFESRKQNHAYDDHLVGPDFVE 116

Query: 73  --------------DKFSSFEAYDA-------------FTRAWLLACRRVLKPNGTLWVI 105
                         D  S +   D              F       C    K N   +  
Sbjct: 117 TLRERLILIHRLLADDGSLYLHLDERMIFHFRVVLDEIFGEKNFRNCITRKKCNPKNYTR 176

Query: 106 GSYHNIFRIGTMLQNLNFWILN-------DIVWRKSNPMPNFRGRRFQ--NAHETLI--- 153
            +Y N+          + ++ N       ++   K  P  +  GRR++    H   +   
Sbjct: 177 KTYGNVADYILFYTKSDNYVWNRPIEPWDEVKSVKEYPCLDPDGRRYKKVPVHAPGVRNG 236

Query: 154 -----WASPSPKAKGYTFNYDALKAANEDVQMRSDWL----------------IPICSGS 192
                W    P    + + Y        D +    W                 IP+    
Sbjct: 237 ETGGEWKGKLPPPGKH-WQYKPSTLDEMDARGEIYWSPTGNPRRKIYLENSAGIPVQDIW 295

Query: 193 ERLRNKDGEKLH----PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
              R+   + +H    PT+K  ALLSRI+ +S+ PGD++LD + GSGT+  VA +L R +
Sbjct: 296 MDFRDAHNQNIHITGYPTEKNPALLSRIIEASSNPGDLVLDCYAGSGTTLVVASELGRKW 355

Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP---RVAFNLLVERGL--IQPGQ 303
           IG++  Q+ I     R+A+        +   + K + P      F L  E     IQP  
Sbjct: 356 IGVDRSQEAITTILHRMANGSDRMGDFVNEKSKKASLPLFSIADFTLFEEAAEENIQPKD 415

Query: 304 ILTNAQGNISATVCADGT 321
               +   +  T+ + G 
Sbjct: 416 ADITSPNGVL-TIRSSGR 432


>gi|225869629|ref|YP_002745576.1| phage DNA methylase [Streptococcus equi subsp. equi 4047]
 gi|225699033|emb|CAW92142.1| phage DNA methylase [Streptococcus equi subsp. equi 4047]
          Length = 224

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 90/241 (37%), Gaps = 32/241 (13%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
             + + ++ + P K  DL   DPPY      + Y         V   +++ +    +   
Sbjct: 6   NEDCMQLMARYPDKHFDLAIVDPPYFSGPEKRQYYGRKISPIGVKRVYEQTT---QWAIP 62

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
            + +     RV K    +W +  Y   F                I+W K N   +F    
Sbjct: 63  GKDYFDELFRVSKNQ-IIWGVNYYDYPF------------GSGRIIWDKVNGSSSF---- 105

Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
              +   + + S    A+ + + ++ +       +        +  G+++L  K   ++H
Sbjct: 106 ---SDCEIAYCSLHDSARLFRYMWNGMMQGKSIAEGH------VQQGNKKLNEK---RIH 153

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PTQKP  L   +L    K GD ILD   GS +S    K+L   ++G E+     + A  R
Sbjct: 154 PTQKPVNLYIWLLQKYAKTGDKILDTHVGSASSLIACKELGFDYVGCELDTHIYNKAIDR 213

Query: 265 I 265
           +
Sbjct: 214 L 214


>gi|254374752|ref|ZP_04990233.1| predicted protein [Francisella novicida GA99-3548]
 gi|151572471|gb|EDN38125.1| predicted protein [Francisella novicida GA99-3548]
          Length = 839

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 57/296 (19%), Positives = 104/296 (35%), Gaps = 65/296 (21%)

Query: 23  IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +IK  +   ++ +     + +  I+ DPP+N          D    D   DS        
Sbjct: 410 LIKSENYQAMQTILPKFKEKIQCIYIDPPFNTG-------SDFDYKDGYQDS-------- 454

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            + +     L   R  L+ +G+L++   Y   +R   +L N                +  
Sbjct: 455 TWLSIMYDRLAIARDFLRDDGSLYLHLDYRANYRGRELLNNTFGCDHLLNEVVYGYRIQG 514

Query: 140 FRGRRFQNAHETL-IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS-------- 190
            +   + N H+T+ I+    P    + F  +  +       + ++ + P  S        
Sbjct: 515 IKRNAYANKHDTIYIYTKSKPDENKHYFQVEKERQIYNKPFIDTETISPEISSLTDKDFK 574

Query: 191 ----------------------------GSERLRNKDGEK----------LHPTQKPEAL 212
                                           + + D  K             TQK + L
Sbjct: 575 YLIDSILNKKVLKDRYKDLLFNSYYSDTFVRDVWDHDKTKPLISGSSEYLQFKTQKSQGL 634

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           LSR++ +S+K    I+D F GSGT+ A A KL R ++GIEM + + ++   R+  V
Sbjct: 635 LSRVISNSSKENHCIMDFFSGSGTTVATAHKLGRKWLGIEMGEHFDNVIIPRMKKV 690


>gi|124009615|ref|ZP_01694288.1| DNA methylase [Microscilla marina ATCC 23134]
 gi|123984756|gb|EAY24736.1| DNA methylase [Microscilla marina ATCC 23134]
          Length = 322

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 1/121 (0%)

Query: 150 ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL-RNKDGEKLHPTQK 208
           ET I         G+  +     AAN       D          ++ ++ D   +HPT K
Sbjct: 200 ETRIPFEDGEGEVGHNPHPKGRVAANIIRTETMDDGYDKFFTVPKVRQHADDYNIHPTLK 259

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           P +L+  ++   T     +LDPF GSG++G  A  L+R+F G E+  DY  IA KR+ +V
Sbjct: 260 PVSLMQHLVKLLTFEQQTVLDPFAGSGSTGVAALNLQRNFTGFELSPDYAKIAQKRLKAV 319

Query: 269 Q 269
           Q
Sbjct: 320 Q 320



 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 69/207 (33%), Gaps = 24/207 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KI   + +  L  +  +S+D +  DPPY +                    WDK       
Sbjct: 7   KIFNKDCV-GLSGVAPQSIDALVTDPPYGIGFQAH--------------EWDKSLP---- 47

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
               +     C RV+KP     V  +   + R+   L++  F I + + W   N MP  R
Sbjct: 48  ---NKQIWSDCLRVMKPGAFGLVFSAVRLMHRLMVDLEDNGFIIKDVLFWVYLNGMPKSR 104

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
                N  + L   S       Y   Y    A +     + +   P  S  ++     G 
Sbjct: 105 N-VGLNIDKKLGVDSKIVGKYTYMQGYKKGGADSYTNPQQKNKYKPSSSLGKKYDGA-GL 162

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIIL 228
            + P  +P  L+ + L       + ++
Sbjct: 163 GIKPAYEPIILIQKPLEKGLNVAENVI 189


>gi|262066934|ref|ZP_06026546.1| DNA (cytosine-5-)-methyltransferase [Fusobacterium periodonticum
           ATCC 33693]
 gi|291379347|gb|EFE86865.1| DNA (cytosine-5-)-methyltransferase [Fusobacterium periodonticum
           ATCC 33693]
          Length = 389

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 81/386 (20%), Positives = 131/386 (33%), Gaps = 93/386 (24%)

Query: 4   KNSLAINENQNSIFEWKDKI------------IKGNSISVLEKLPAK---SVDLIFADPP 48
           K+  +I++ +  I   K+K             IK ++   + +L  +    VDL++ DPP
Sbjct: 6   KDKKSIDKIEKKILTCKNKFLSLKTKNKYGLFIKDDNFIAMSRLLDEYQGKVDLVYIDPP 65

Query: 49  YNLQ---LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI 105
           YN +             S    V  ++    +F+ Y  F R  L+   ++L P GTL++ 
Sbjct: 66  YNTKSIFYYDNKKTSTISSSKNVDIAYKDNMNFKDYLEFIRERLILIHKLLSPKGTLYLH 125

Query: 106 GSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPNFR---------------------- 141
                   I  +L  +      +NDI   KSNP    R                      
Sbjct: 126 IDIKVGHYIKIILDEIFGTNNFINDITRVKSNPKNFSRNAYGNEKDVIYVYSKIEKNNIF 185

Query: 142 ----------------------GRRFQNAHETL----------IWASPSPKAKGYTFNYD 169
                                 GRR+                 +        KG  + Y 
Sbjct: 186 NNILNPVSKEKIEKNFSKIDKNGRRYTTVPCHAPGETKNGVTGMKWKDIFPPKGRHWRYS 245

Query: 170 ALKAANEDVQMRSDWLIP-ICSGSERLRNKDGEKL--------------HPTQKPEALLS 214
             +    D   R +W    +    +     +GEK+              +PTQK   +L 
Sbjct: 246 PEELEKLDKDNRIEWSKNGVPRIIKYADEHNGEKIQDIWKDFKDPQYPDYPTQKNFDMLE 305

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
            I+  S+    II+D F GS +   +  K  R  IGI+      DIA K + S Q L  I
Sbjct: 306 LIIKQSSNENSIIMDCFAGSASFLEMGLKNNRFVIGIDNS----DIAYKLLLSNQNLQKI 361

Query: 275 ELTVLTGKRTEPRVAFNLLVERGLIQ 300
           E+ +   K  E +     L +  +I+
Sbjct: 362 EVIIQDKKNNEKQFKQMNLFKEEIIE 387


>gi|199598945|ref|ZP_03212354.1| modification methylase DpnIIB-like protein [Lactobacillus rhamnosus
           HN001]
 gi|199590145|gb|EDY98242.1| modification methylase DpnIIB-like protein [Lactobacillus rhamnosus
           HN001]
          Length = 251

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 88/246 (35%), Gaps = 30/246 (12%)

Query: 39  SVDLIFADPPYNLQLNGQLYRP----DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
              L+ AD PYN+  N     P      +  +  +    K       D     ++  C  
Sbjct: 22  KAQLVIADIPYNIGNNAYGSNPTWYVGGNDKNGTSSKAGKTFFDTDVDFRVAEFMHFCSH 81

Query: 95  VL----KPNG---TLWVIGSYHNIFRIGTMLQNLNF-WILNDIVWRKSNPMPNFRGRRFQ 146
           +L    K  G    + V  ++  +  +        F      I  +  +        R  
Sbjct: 82  MLAKEPKERGKAPAMIVFCAFQQMQMVIEYGNKYGFQHSFPLIFIKNQSAQALKANMRIV 141

Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
            A E  +        K            N D QM  +W            +    K+HPT
Sbjct: 142 GATEYAVVLYRDKLPK-----------FNNDGQMVFNWF-------RWDTDNTYPKIHPT 183

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           QKP  +L R++   T  GD+++DP  GSG++   A +L RS  G E+K+D   +A +++ 
Sbjct: 184 QKPIPVLKRLIELFTDQGDVVIDPCAGSGSTLRAAAELGRSCFGFEIKKDMYRLAKEKML 243

Query: 267 SVQPLG 272
           S   L 
Sbjct: 244 STMSLA 249


>gi|167754382|ref|ZP_02426509.1| hypothetical protein ALIPUT_02676 [Alistipes putredinis DSM 17216]
 gi|167659007|gb|EDS03137.1| hypothetical protein ALIPUT_02676 [Alistipes putredinis DSM 17216]
          Length = 262

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 82/249 (32%), Gaps = 45/249 (18%)

Query: 39  SVDLIFADPPYNLQLN-----------GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
              LI AD PYNL  N           G     + +L        DK      +  F   
Sbjct: 21  KAQLIIADVPYNLGANAYASNPAWYVDGDNKNGESALAGKQFFDTDKDFRPAEFMHFCSQ 80

Query: 88  WLLACR-----------RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            L   +           R       + +   +  +     + Q         +V+RK   
Sbjct: 81  MLRKDKPIKEEKSEGGGRSKGGAACMILFCPFEQMHYYIELGQRYGLKRYIPLVFRKDFS 140

Query: 137 MPNFRGRRF---QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
               +          +  +++    P      FN D     N    +R            
Sbjct: 141 AQVLKANMKVVGNCEYGLILYRDRLP-----KFNNDGRMIFNCFDWVR------------ 183

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
              + D  K+HPTQKP  LL R++   T  GD+++DP  GSGT+   A  + R   G E+
Sbjct: 184 ---DTDTPKIHPTQKPVPLLERLIEIFTDKGDVVIDPCAGSGTTLLAAANMGRKAYGFEI 240

Query: 254 KQDYIDIAT 262
           K+D+   A 
Sbjct: 241 KKDFCAEAR 249


>gi|305432837|ref|ZP_07401995.1| type III restriction enzyme M protein [Campylobacter coli JV20]
 gi|304443991|gb|EFM36646.1| type III restriction enzyme M protein [Campylobacter coli JV20]
          Length = 820

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 55/316 (17%), Positives = 114/316 (36%), Gaps = 72/316 (22%)

Query: 1   MSQKNSLAINENQNSIFEWKD-KIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQ 56
           +S++N   +  +  ++ E  + +++K ++   L  L  K    +DLI+ DPP+N      
Sbjct: 355 LSEENYYKLLSSFENLDEILNGELVKADNFQALNSLMPKYQGKIDLIYIDPPFNTG---- 410

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
                     +  D  DKF     + +     L   +  L   G+ ++    +  +    
Sbjct: 411 ----------SDFDYKDKFQD-STWLSLMHNRLELAKEFLSDKGSFYLHLDENADYFGRI 459

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGR---------------------RFQNAHETLIW- 154
           +L      +    +   +N   +                         +  N+    +W 
Sbjct: 460 LLNEFFGEMECKKITFDTNATKDEEADLFGYKSFGNNFVLKSSTILFLKKTNSIFNKLWK 519

Query: 155 -----------------------ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
                                         + Y   +   K  +E + ++ + + P+   
Sbjct: 520 PNRNSSLLNLGQLDLIGISTIETPKKITDYEYYVQKWKNGKLYHEKIDIKDEKIYPLGDI 579

Query: 192 SERLRN--------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
              L +         +    + +QKPE +L RI+ SS++   +++D F GSGT+ AV+ K
Sbjct: 580 WNDLYSFTQSEMRVSENISFYSSQKPENMLRRIIQSSSEENSVVMDFFVGSGTTLAVSHK 639

Query: 244 LRRSFIGIEMKQDYID 259
           L R +IGIEM + + +
Sbjct: 640 LNRKYIGIEMGEHFYE 655


>gi|262039287|ref|ZP_06012604.1| nuclease [Leptotrichia goodfellowii F0264]
 gi|261746677|gb|EEY34199.1| nuclease [Leptotrichia goodfellowii F0264]
          Length = 400

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 83/252 (32%), Gaps = 50/252 (19%)

Query: 23  IIKGNSIS------VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           ++ G+S        +L+ +    ++L   DPPY + +         +   A T  + K  
Sbjct: 183 LMCGDSTKKDNFEKLLKDID---INLCLTDPPYGINIVKN--GKIGAENAAKTTEYKKVK 237

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E  +   +++                                       +++ + S  
Sbjct: 238 GDETTETAQKSF---------------------------------------ELIKQYSEK 258

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +  F G  F              K K    N  A              +           
Sbjct: 259 VILFGGNYFTAFLPFSDGWIVWDKRKDMNSNNFADGELAWCNFHTPVRIYKQLWNGMIRE 318

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
            + G+++HPTQKP  +L  IL   +K  D ILD F GSG++    ++  R+   IE ++ 
Sbjct: 319 GERGKRVHPTQKPIRMLGEILQDFSKENDNILDVFGGSGSTLIACEETGRNCYMIEYEEH 378

Query: 257 YIDIATKRIASV 268
           Y ++  KR   +
Sbjct: 379 YCNVILKRWEDL 390


>gi|329117582|ref|ZP_08246299.1| DNA (cytosine-5-)-methyltransferase [Streptococcus parauberis NCFD
           2020]
 gi|326907987|gb|EGE54901.1| DNA (cytosine-5-)-methyltransferase [Streptococcus parauberis NCFD
           2020]
          Length = 250

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 93/243 (38%), Gaps = 34/243 (13%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS---FEAYDAF-TRAWLLACRRV 95
             LI AD PYNL  N     P      +  +   K +    F+  + F    +   C R+
Sbjct: 22  AQLIIADIPYNLGNNAYASDPRWYENGSNKNGESKLAGKSFFDTDNDFKINNFFDFCARL 81

Query: 96  LKPN----G---TLWVIGSYHNIFRIGTMLQNLNFWILNDIVW-RKSNPMPNFRGRRFQN 147
           LK      G    + V  S+     +    +   F     + + +KS+P       +   
Sbjct: 82  LKKEPKEKGQAPAMIVFHSWQQREMVIQCGKKHGFNNAYPLYFTKKSSPQVLKANMKIVG 141

Query: 148 AHE--TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
           A E  T+++    P      FN +     N        W       +          +HP
Sbjct: 142 ATEEATVLYRDKLP-----KFNNNGSMVLN-----HMVWEKDSSYPT----------IHP 181

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           TQKP  +L R++   T P D+++DP  GSG++   A ++ R   G E+K+D+ + A   +
Sbjct: 182 TQKPIPVLKRLIEIFTDPEDVVIDPVAGSGSTIRAAIEMNRCAYGFEIKKDFYNKAQSEM 241

Query: 266 ASV 268
            S 
Sbjct: 242 LST 244


>gi|118588966|ref|ZP_01546373.1| DNA methylase N-4/N-6 [Stappia aggregata IAM 12614]
 gi|118438295|gb|EAV44929.1| DNA methylase N-4/N-6 [Stappia aggregata IAM 12614]
          Length = 252

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 82/253 (32%), Gaps = 36/253 (14%)

Query: 22  KIIKGNSISVLEKL----PAKSVDLIFADPPYNLQLNGQLYRPDHSLV--DAVTDSWDKF 75
           ++  G++  V+ KL    P    D      PY L   G         V        +D  
Sbjct: 10  ELHLGDARDVVPKLGRRFPVACFDA-----PYRLTSGGAARSSGKHKVMSGGWMADYDNS 64

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
             F   D   +  +      L  +  ++   +  N F              N + W K  
Sbjct: 65  GQFMVCDITWKEIMQLVVSCLAEDADVYAFANDKNQFEAQREAFAAGLKFHNMLAWDKKT 124

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
                  R +    E +++                   A +        L+P        
Sbjct: 125 ATA---NRFYMKNLEFILYLYR--------------GRARKIANCGDKQLVPFP------ 161

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                   HPT+KP  L+   + +S +PG+ ++DPF GSGT+     +    F+G+E+  
Sbjct: 162 --HRDVTDHPTEKPVPLVEAYIRNSARPGEAVIDPFMGSGTAAVACVRTGNPFVGVEIDP 219

Query: 256 DYIDIATKRIASV 268
            Y + A +R+   
Sbjct: 220 KYFETARRRVERA 232


>gi|225155635|ref|ZP_03724124.1| DNA methylase N-4/N-6 domain protein [Opitutaceae bacterium TAV2]
 gi|224803608|gb|EEG21842.1| DNA methylase N-4/N-6 domain protein [Opitutaceae bacterium TAV2]
          Length = 315

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 88/288 (30%), Gaps = 42/288 (14%)

Query: 22  KIIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQLYRPD-HSLVDAVTDSWDKFSSFE 79
            +  G+ I  +  KL   S+DL     P+         R D  +  D +          +
Sbjct: 6   TLHFGDCIEGMATKLAPDSIDLCVTSIPFGALFMYSGKREDIGNNRDCLMVERHADMLAD 65

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVI-------------GSYHNIFRIGTMLQNLN--FW 124
            +    R W+    RV++P   + +                  ++      +  L    W
Sbjct: 66  QFGLHMRFWVAQLLRVMRPGRNICIHIQQLLKYANQHGAMGRRDLRNATVRMMELGGFEW 125

Query: 125 ILNDIVWRKSNPMPNFRGRRF----------------QNAHETLIWA-----SPSPKAKG 163
                + +    M                         N    +         P P  + 
Sbjct: 126 KAEFAIPKNPQAMAQRNNLHCLMFATGKRDAVDLGPAPNDFVLVFQKPGENAVPVPALRD 185

Query: 164 YTFNYDALKAANEDVQM----RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVS 219
              N     A  E ++       D          +   +  E+ H       ++ R +  
Sbjct: 186 ENANPRGWVATEEWIKWASGVWDDIRETDVLDGWKSARETDEERHVCPLQLEVIRRCVKL 245

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            T PG+++LDPF G G++  V+ +  R  +G E+K+ Y +++ + +  
Sbjct: 246 YTNPGELVLDPFMGIGSTAYVSVEQGRRAVGFELKESYHNLSIRNLEK 293


>gi|85813800|emb|CAF31853.1| putative 3-N-methyltransferase [Streptomyces hygroscopicus subsp.
           hygroscopicus]
          Length = 272

 Score = 99.7 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 96/260 (36%), Gaps = 29/260 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            +  G++   L  LP +SV L+   P +           + S  D  + ++  +   + Y
Sbjct: 21  TLFHGDATVFLRALPERSVRLVVTSPWF-------TGPCEPSSQDPTSPAFGDW--LDHY 71

Query: 82  DAFTRAWLLACRRVLKPNGTLW----VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            A     LL    V+   G  W     + +  +   +  +L+  ++++L +  W     +
Sbjct: 72  LAEMERVLLWDGSVVLETGGAWARDRPVRTVQHYAALSRLLERGDWYLLQEFYWYNPGLL 131

Query: 138 P---NFRGRRFQNAHE---TLIWASPSPKAKGYT-----FNYDALKAANEDVQMRSDW-L 185
                +  RRF   H+   T  W S SP A   T     F           + +   W  
Sbjct: 132 EVNEEYEERRFNRLHDCVTTWFWLSRSPDAPADTRRVRGFQNHLTHPFGNFLALSDSWAD 191

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
            P    +   R++      P   P       +   T+ G+ ++DPF G G++   A+K  
Sbjct: 192 QPYLEAAGERRSRADLDRFPVAAPL----YFIRLLTEEGEHVVDPFAGIGSTALAAEKAG 247

Query: 246 RSFIGIEMKQDYIDIATKRI 265
           R +   ++    I IA +RI
Sbjct: 248 RRWSCNDISAAAISIAKQRI 267


>gi|224437467|ref|ZP_03658429.1| DNA methylase N-4/N-6 domain protein [Helicobacter cinaedi CCUG
           18818]
          Length = 169

 Score = 99.7 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 64/156 (41%), Gaps = 3/156 (1%)

Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
           + T+ + + +   + I+W + N         + +A    + A        Y   +     
Sbjct: 5   LTTLAKQIGWKYHSTIIWNEGNISRRTAWGSWLSASAPYVIAPVELIVVLYKGAWKKKHK 64

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFF 232
              D+    +  +   +G      +  +++ HP   P  L  R +   +  GD++ DPF 
Sbjct: 65  GESDI--SKEEFMAWTNGLWSFNGESKKRIGHPAPFPRELPKRCIKLFSYVGDVVFDPFC 122

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           GSGT+   +    R FIGIE+ ++Y +++ KR    
Sbjct: 123 GSGTTMIESYLNNRQFIGIELDREYCELSKKRFLET 158


>gi|308270524|emb|CBX27136.1| hypothetical protein N47_A11650 [uncultured Desulfobacterium sp.]
          Length = 388

 Score = 99.7 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 47/79 (59%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           +   +LR    + +HPT KP AL++ ++   ++ GD++LDPF GSGT+   A    R  I
Sbjct: 301 NNPYKLRPALRKNIHPTVKPLALMTYLIKMGSRKGDVVLDPFMGSGTTCIAALLTNRRSI 360

Query: 250 GIEMKQDYIDIATKRIASV 268
           GIE +++Y  IA +R  S 
Sbjct: 361 GIEKEEEYFSIAKERCKSA 379



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 26/126 (20%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK-FSSFE 79
           + +  G+ + VL+++   SVD++  DPPY ++  G+              +WDK   S E
Sbjct: 13  NTLSLGDCLEVLKQMSDNSVDVMITDPPYGIKFMGK--------------NWDKAIPSVE 58

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF--RIGTMLQNLNFWI-LNDIVWRKSNP 136
            +          C+RVLKP    +++ +       R+   L+          I W  ++ 
Sbjct: 59  IW--------KECQRVLKPGAFAFIMCAPRQDLLCRMTDNLEKAGLKTGFTPIYWTYASG 110

Query: 137 MPNFRG 142
            P    
Sbjct: 111 FPKAHN 116


>gi|293372203|ref|ZP_06618590.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CMC 3f]
 gi|292632829|gb|EFF51420.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CMC 3f]
          Length = 251

 Score = 99.7 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 49/239 (20%), Positives = 82/239 (34%), Gaps = 34/239 (14%)

Query: 39  SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD--------AFTRAWLL 90
              LI AD PYN+  N     P   +    ++   + +  E +D         F      
Sbjct: 21  KAQLIIADIPYNIGKNAYGSNPSWYIDGDNSNGESELAGKEFFDTDKDFRITEFLHFCSK 80

Query: 91  ACRRVLKPNG---TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF-- 145
              +  K  G    + V   +   F +    +        ++V++K+      +      
Sbjct: 81  MLVKEPKEKGKSPCMIVFCEFQQQFELIQKAKEYGLNKYINLVFKKNFSAQVLKANMKVV 140

Query: 146 -QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
               +  L++    P      FN       N     R                 D  ++H
Sbjct: 141 GNCEYGVLLYRDKLP-----KFNNGGRMVFNCFDYPRDI---------------DTPRIH 180

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           PTQK   LL R++   T  GD+++DP  GSGT+   A +  R   G E+K+ +   A K
Sbjct: 181 PTQKSVPLLERLIELFTDAGDVVIDPCAGSGTTLLAAAQCGRKAYGFEIKKKFYADANK 239


>gi|108758950|ref|YP_630621.1| modification methylase [Myxococcus xanthus DK 1622]
 gi|108462830|gb|ABF88015.1| modification methylase [Myxococcus xanthus DK 1622]
          Length = 260

 Score = 99.7 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 85/227 (37%), Gaps = 17/227 (7%)

Query: 45  ADPPYNL---QLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
            DPPY L   +  G   R   +      +   +F +   Y AF+ AWL +    L P+  
Sbjct: 37  TDPPYCLLTRRRKGGDLRDTRAHKKIDQNPIVRFETVRDYRAFSEAWLSSATAHLTPDAP 96

Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
           L +  +      I T  + L +  L                 +    +E  +  + +P  
Sbjct: 97  LIIWTNLLGKEPILTAARGLGYPHLRGEYVWGKRTTDKNANEQTLRVYEVALVIARTPAP 156

Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
                +   + A              +  G +          HP  KP ++L  ++ + +
Sbjct: 157 PLAPGDLPTVWA--------------VVGGYDDEGEAKRWGGHPHHKPFSVLEPLVRTYS 202

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +PGD +LDPF GSG+  + A +L R    +E++ ++ +  T R+   
Sbjct: 203 RPGDTVLDPFAGSGSMPSAALRLGRRPACLEIEPEWAERVTHRLRET 249


>gi|308274483|emb|CBX31082.1| hypothetical protein N47_E45940 [uncultured Desulfobacterium sp.]
          Length = 544

 Score = 99.3 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 68/334 (20%), Positives = 113/334 (33%), Gaps = 86/334 (25%)

Query: 19  WKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD-------------- 61
           + +++I G+++  L+ L    A  V  ++ DPPYN     + Y                 
Sbjct: 45  FDNRLIFGDNLLALKALEWEFAGKVKCVYIDPPYNTGSAFEHYDDGIEHSVWLSLMRDRL 104

Query: 62  ---HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW----------VIGSY 108
                L+      W      EA+  + +              T+            + S+
Sbjct: 105 EIIQRLLSDDGSMWITIDDNEAH--YLKVLCDEVFGRGNFVATMVWEKRTSRENRRVFSF 162

Query: 109 HNIFRIGTMLQNLNFWIL-------NDIVWRKSNPMPNFRGRRFQ--------NAHETLI 153
           ++ F +    Q   F +         +I+ R  NP  + RG            +A  +  
Sbjct: 163 NHDFVLVYAKQKQKFELTRNPLSLNQEILGRYKNPDNDPRGPWQSVSANAQAGHATPSQF 222

Query: 154 WASPSP------KAKGYTFNY------------DALKAANEDVQMRSDWLIP-------- 187
           +    P        KG  + Y            +    AN D   R    +         
Sbjct: 223 YKLRLPSGREIDPPKGRCWLYTKDRIEQEIAAGNIWFGANGDNTPRVKKFLSNNQDKGLT 282

Query: 188 ---ICSGSERLRNKDGEK----------LHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
              I   SE   N D +K          +    KPE  L R++  +T PGD++LD F GS
Sbjct: 283 PETIWPASEVGTNDDAKKGLLQLLPHVQVFDNPKPEGFLERLIHIATNPGDLVLDSFAGS 342

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           GT+GAVA K+ R +I +E+ +        R+  V
Sbjct: 343 GTTGAVAHKMGRRWIMVELGEHCHTHIIPRLKKV 376


>gi|60202514|gb|AAX14643.1| DNA methyltransferase [Geobacillus stearothermophilus]
          Length = 447

 Score = 99.3 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 77/191 (40%), Gaps = 18/191 (9%)

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           F+ YD+F +A      ++ K           + +  I    + +   +     W+  N  
Sbjct: 262 FDKYDSFIKAVKNINPKLAKKY--------TYELLEIALADEKVKQDVEKWKGWKLGNLA 313

Query: 138 PNFRGRRFQNAHETLIW-ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           P          +E + W   P       T N    +    ++ +         +  +   
Sbjct: 314 PY---------YEPIAWLFKPYDSVVTLTDNVLVNEVGAINMNVGKINGREPKNILKFDF 364

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
             + EK+H  QKP  L+  ++   T+ G +ILDPF GSGT+   AK+L R+FI  E+ + 
Sbjct: 365 TNEEEKVHDAQKPIELIKYLINIMTREGQVILDPFVGSGTTAVAAKELNRNFIAFEINEH 424

Query: 257 YIDIATKRIAS 267
           Y  +A KR+  
Sbjct: 425 YHSLANKRLNQ 435



 Score = 76.2 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 59/155 (38%), Gaps = 20/155 (12%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN------- 54
           S+ + +  N  ++ +  + +KII G+    L KLP  SV +  +D PY + L+       
Sbjct: 59  SELDKILNNSRESDLTPYLNKIILGDCTEYLSKLPKNSVHMFLSDIPYGINLDEWDVLHN 118

Query: 55  -----------GQLYRPDHSLVDAVTDSWDKFSS--FEAYDAFTRAWLLACRRVLKPNGT 101
                       Q  +          + W+K      +AY  +  +W      V+K    
Sbjct: 119 NTNSALLGASPAQEGKSAFKRRGKPINGWNKEDRQINQAYHDWVYSWAQQLFPVMKEGAP 178

Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           + + G+   I      ++   F + + + W KS+ 
Sbjct: 179 VLIFGARRTISSAIAAMEKAGFLLKDILAWEKSSA 213


>gi|300869254|ref|ZP_07113847.1| DNA methylase N-4/N-6 domain protein [Oscillatoria sp. PCC 6506]
 gi|300332745|emb|CBN59045.1| DNA methylase N-4/N-6 domain protein [Oscillatoria sp. PCC 6506]
          Length = 450

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 67/356 (18%), Positives = 124/356 (34%), Gaps = 78/356 (21%)

Query: 20  KDKIIKGNSISVLEKLPA-----KSVDLIFADPPY---------NLQLNGQLYRPDHSLV 65
            +K+I G+++ VL  L         V L++ DPPY         NL      +R     +
Sbjct: 55  TNKLIYGDNLRVLRALLDDANIAGKVSLVYIDPPYATGANFASRNLDHAYNDFREGAEYL 114

Query: 66  DAVT-----------DSWDKFSSFEAYDAF--------------TRAWLLA--------C 92
           + +            D    +   +   AF               R W+           
Sbjct: 115 EYIRCRLILMRELLADDGSIYVHLDENMAFPVKILMDEIFGIKNFRNWITRKKCNPKNYT 174

Query: 93  RRVLKPNGTLWVIGSYHNIFRIGTMLQ-------NLNFWILNDIVWRKSNPMPNFRGRRF 145
           RR         +  S    +      +       N  +  +     R+   +P       
Sbjct: 175 RRQYGNVSDYILFYSKTEQYIWNQPFESWTEVTANKEYEYVEKETGRRYKKVPIHAPGIR 234

Query: 146 QNAHETLIWASPSPKAKGYTF--------------NYDALKAANEDVQMRSDWLIPICSG 191
             A          P  K + +               + +       V + +   IPI   
Sbjct: 235 NGATGQKWRGMMPPPGKHWQYTPATLDLMDARGEIYWSSTGNPRRKVYLDNSKGIPIQDI 294

Query: 192 SERLRNKDGEKL----HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
               ++   + +    +PT+K   LL R++++S+ PGD++LD F GSGT+ AVA+ L R 
Sbjct: 295 WLDFKDAHNQNIKITGYPTEKNPELLKRMIIASSNPGDLVLDAFAGSGTTAAVAEDLGRQ 354

Query: 248 FIGIEMKQDYIDIATKRIAS-VQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPG 302
           +I I+  +  ++    R+A   +P+G+     L G   +P+   +L  E  +++ G
Sbjct: 355 WIAIDNAKLALETMVWRLAKGTEPMGD----FLKGNDDQPK-QISLFDENRVLKSG 405


>gi|300777382|ref|ZP_07087240.1| N-6 adenine-specific DNA methylase [Chryseobacterium gleum ATCC
           35910]
 gi|300502892|gb|EFK34032.1| N-6 adenine-specific DNA methylase [Chryseobacterium gleum ATCC
           35910]
          Length = 253

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 58/259 (22%), Positives = 82/259 (31%), Gaps = 50/259 (19%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            I + N++ ++ + P    DL   DPPY + LN      D+         WD   + + +
Sbjct: 3   TITRENNMELMARYPDNYFDLAIVDPPYGI-LNKTKRGGDYKFNMDEYSQWDVKPNDDYF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           +   R             G LW+   Y+  F                             
Sbjct: 62  NELLRVSKNQIIWGGNYFGQLWLKSEYNKGF----------------------------- 92

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
                     +IW    P+    T N  ++    E      D    I   S R   K+  
Sbjct: 93  ----------IIWDKNQPE----TLNNFSMA---EMAWSSLDKPSKIFRFSVR---KNRN 132

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+HPTQKP  L   +L      GD ILD   GSGT          S    E+ + Y   A
Sbjct: 133 KIHPTQKPVELYEWLLKMYANQGDKILDTHLGSGTIAIACYNAGLSLTACEISETYYLKA 192

Query: 262 TKRIASVQPLGNIELTVLT 280
             +I  V P   I    L 
Sbjct: 193 LDKIKEVIPESAIHTNDLD 211


>gi|208780084|ref|ZP_03247427.1| type III restriction-modification system: methylase [Francisella
           novicida FTG]
 gi|208744088|gb|EDZ90389.1| type III restriction-modification system: methylase [Francisella
           novicida FTG]
          Length = 558

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 76/326 (23%), Positives = 116/326 (35%), Gaps = 69/326 (21%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLY--------- 58
           E   +I    + I+KGN++  L  L    A  V LI+ DPPYN   +   Y         
Sbjct: 161 EENPTISNKDNLILKGNNLLALHSLKKKYAGKVKLIYIDPPYNTGNDSFKYNDNFNHSTW 220

Query: 59  ---------------RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG--- 100
                          R D ++  +  D+   +      + F R   +      K  G   
Sbjct: 221 LTFMKNRLEVARELLRDDGAIFISCDDNEQAYLKILMDEIFGRNNFINNIVWHKKRGKDN 280

Query: 101 TLWVIGSYHNIF----RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF----------Q 146
           +       H       ++  +L+ L   +         N   + RG              
Sbjct: 281 SAKYFSITHENLIVFGKVKEILEILKVDLEESTKKAYKNQDNDPRGNYRILGIWSRQQGG 340

Query: 147 NAHETL----------IWASPSPKAKG-----------YTFNYDALKAANEDVQMRSDWL 185
           + +E +          +W       K                Y    + N      + W 
Sbjct: 341 SEYEYITNSGKKYSKRLWLVNKDTMKKLDDDNRLIESDNKLYYKKFLSENTGSIPETIWK 400

Query: 186 IPICSGSERLRNKD--GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
               + + +   K   G+ +  T KPE LL RIL  STKP D++LD F GSGT+ AVA K
Sbjct: 401 DTSNNANAKDEIKKLFGDAVFVTPKPEPLLERILEISTKPNDLVLDFFVGSGTTCAVAHK 460

Query: 244 LRRSFIGIEMKQDYI-DIATKRIASV 268
           + R +IGIE + DYI DI  +R+  V
Sbjct: 461 MGRQYIGIE-QMDYIQDITVERMKKV 485


>gi|170718367|ref|YP_001783592.1| DNA methylase N-4/N-6 domain-containing protein [Haemophilus somnus
           2336]
 gi|168826496|gb|ACA31867.1| DNA methylase N-4/N-6 domain protein [Haemophilus somnus 2336]
          Length = 254

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/242 (21%), Positives = 88/242 (36%), Gaps = 30/242 (12%)

Query: 39  SVDLIFADPPYNLQLNGQLYRPDH------------SLVDAVTDSWDKFSSFEAYDAFTR 86
              L+ AD PYN+  N     P+                 A  D+ + F   E     ++
Sbjct: 27  KAQLVIADIPYNVGNNAYASSPEWYKDGDNKNGESDKANKAFFDTDENFRIAEFMHFCSK 86

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW-RKSNPMPNFRGRRF 145
             +   +   +    +    ++  I  +    +   F     +V+ + S+P       + 
Sbjct: 87  MLVKEPKERNQAPCMIV-FCAFQQIQMVLEYAEKYGFKKHIPLVFIKSSSPQVLKANMKV 145

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
             A E  +        K   F  +     N     R D              K   KLHP
Sbjct: 146 VGATEYALILYREKLPK---FRNNGKMIKNWMEWTRDD-------------RKKYPKLHP 189

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           TQKP  +L R++   T  GD+++DP  GSG++   A++L R+  G E+K+D    A + +
Sbjct: 190 TQKPIDVLKRLIEIFTDEGDVVIDPVAGSGSTLRAARELGRNSYGFEIKKDVYQNAKENM 249

Query: 266 AS 267
             
Sbjct: 250 LK 251


>gi|315638959|ref|ZP_07894130.1| type II DNA modification methylase EcaI [Campylobacter upsaliensis
           JV21]
 gi|315480988|gb|EFU71621.1| type II DNA modification methylase EcaI [Campylobacter upsaliensis
           JV21]
          Length = 368

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 60/322 (18%), Positives = 107/322 (33%), Gaps = 74/322 (22%)

Query: 21  DKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + +I  ++++ +  L        S+DLI+ DPP+      +L     +  D+     DKF
Sbjct: 31  NLLIYDDNLNAMRFLAQELDYQNSIDLIYIDPPFGTNNIFKLGSTMSAEKDSKIAYKDKF 90

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRK 133
            S E+Y  F    L+  R+++   G+L++         +  +   +      +NDI   K
Sbjct: 91  -SLESYLEFLYCRLVWIRKLMSEKGSLYLHIDSKMGHYVKILCDEVFGRENFINDITRIK 149

Query: 134 SNPMPNFRG---------------------------------RRFQNAHETLIWASPSPK 160
            NP    R                                  +RF    +   + +    
Sbjct: 150 CNPKNFKRKAYGNIKDMILFYAKSSQYIWNEIKDEVLESDLKKRFNKKDDKGYYTTIPLH 209

Query: 161 AKGYTFNYDALKAAN-----------------------------EDVQMRSDWLIPICSG 191
           A G T N ++ +  N                              +   R       C G
Sbjct: 210 APGITQNGESGQEWNGIKPPNGRHWRCSLKELDRLQELGLIEWSRNNNPRKKVYRDKCKG 269

Query: 192 SE----RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
            +              +PT+K  A+L RI+  S+     ++D F G G     A  L R 
Sbjct: 270 KKIQDIWEFKDSQNPAYPTEKNRAMLRRIIAMSSNEDSRVMDCFCGGGGFLQEALNLGRK 329

Query: 248 FIGIEMKQDYIDIATKRIASVQ 269
           FIGI+   + I +  K + + +
Sbjct: 330 FIGIDEGIEAIKLNQKWLKASE 351


>gi|194097602|ref|YP_002000638.1| putative modification methylase [Neisseria gonorrhoeae NCCP11945]
 gi|193932892|gb|ACF28716.1| putative modification methylase [Neisseria gonorrhoeae NCCP11945]
          Length = 111

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/112 (41%), Positives = 66/112 (58%), Gaps = 1/112 (0%)

Query: 42  LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
           +IFADPPY L  +G     +  +V     +WDK     A   F   WL  C  +LKPNGT
Sbjct: 1   MIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGMAADLEFYEEWLRLCYALLKPNGT 59

Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           +WV G++HNI+ IG ++Q + + ILN+I W K NP PN   R F ++ ET++
Sbjct: 60  IWVCGTFHNIYLIGYLMQTVGYHILNNITWEKPNPPPNLSCRFFTHSTETIL 111


>gi|71899324|ref|ZP_00681485.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
 gi|71730950|gb|EAO33020.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
          Length = 196

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 70/187 (37%), Gaps = 32/187 (17%)

Query: 88  WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL-----NDIVWRKSNPMPNFRG 142
            +    R+L+ +G ++    Y++ +R+   L      I+       I+  + N   NF  
Sbjct: 35  VITEMMRLLRNDGAIF----YNHKWRVQAGLLQDRTDIVTGFPVRQIIIWQRNGGINFNS 90

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
             F   +E +   +          N                W IP          ++ + 
Sbjct: 91  GYFLPTYEVIYLIAKPDFKLKPKANAIGD-----------VWTIP----------QESKN 129

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HP   P  L  R + S       +LDPF GSGT    A+ L   ++GIE    Y++++ 
Sbjct: 130 PHPAPFPVELAQRCIESVGAEP--VLDPFMGSGTIAVAAEILGYDWVGIEKSPKYVEMSL 187

Query: 263 KRIASVQ 269
            R+ S++
Sbjct: 188 DRLKSLK 194


>gi|224419165|ref|ZP_03657171.1| adenine-specific DNA methylase [Helicobacter canadensis MIT
           98-5491]
 gi|313142671|ref|ZP_07804864.1| modification methylase HhaII [Helicobacter canadensis MIT 98-5491]
 gi|313131702|gb|EFR49319.1| modification methylase HhaII [Helicobacter canadensis MIT 98-5491]
          Length = 229

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 88/225 (39%), Gaps = 27/225 (12%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           + + +L+ L   S+DL F DP Y   L+   Y  +            +    +  ++   
Sbjct: 25  DGLELLQSLGDCSIDLCFFDPQYRGVLDKMRYGNEGERQKG------RSVLVQMSESTII 78

Query: 87  AWLLACRRVLKPNGTLWVIGS-YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
            ++    RVLK +  L +    +H    +   L + +  I++ I W K   M    G R 
Sbjct: 79  HFIQEISRVLKSSRYLMLWIDKFHLCEGVRPWLDSTSLEIVDLITWDK---MKMGMGYRT 135

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
           +   E L+     P     T+          +++      IP          ++  K HP
Sbjct: 136 RKQSEYLLIVQKKPIKAKGTWKLH-------NIRDVCSEKIP----------QNELKAHP 178

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
             KP+ L   ++ S T  GD++ DP  GS +     K+L R+FIG
Sbjct: 179 HSKPKTLQKTLIESCTNIGDLVCDPAAGSFSVLECCKELGRNFIG 223


>gi|53711930|ref|YP_097922.1| DNA methyltransferase [Bacteroides fragilis YCH46]
 gi|52214795|dbj|BAD47388.1| DNA methyltransferase [Bacteroides fragilis YCH46]
          Length = 339

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 61/345 (17%), Positives = 117/345 (33%), Gaps = 95/345 (27%)

Query: 16  IFEWK-DKIIKGNSISVLE------KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
           IFE K   +I+GNSI +L+      KL  K V+LI   PP+ L    Q            
Sbjct: 10  IFESKLGSLIQGNSIELLKSKKYLNKLKGK-VNLIVTSPPFPLNNKKQYGNEKG------ 62

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV--IGSYHNIFRIGTMLQ------- 119
                     + Y  +          +L  +G+L +    ++     + ++L        
Sbjct: 63  ----------DEYLKWFTDLAPIFSDLLADDGSLVIEIGNAWEPERPVQSLLHLECLFGL 112

Query: 120 ----NLNFWILNDIVWRKSNPMPNFRGR------RFQNAHETLIWASPSPKAK------- 162
                 N  ++ + +    + +P+          R  +++  + W + +   K       
Sbjct: 113 VKHPTANLRLIQEFICYNPSKLPSPAQWVTVNRIRTVDSYTHVWWLAKNDYPKADNTKVL 172

Query: 163 -----------------------------------------GYTFNYDALKAANEDVQMR 181
                                                       F  +++    +     
Sbjct: 173 RPYSKSMEQLLKKGKYNAGKRPSEHNISESGFLKDHGGSISHNFFEMESIDEKRKVRLPH 232

Query: 182 SDWLIPICSGSE---RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
           S       + ++   +   +     HP +    L++  +   T   D++LDPF GS T+G
Sbjct: 233 SVLSFSNTNSNDYFLKTCREKSITPHPARMNGGLINFFINFLTDEDDLVLDPFSGSNTTG 292

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
             A+KL+R +I  E+K+DYI+ A  R +  Q L +    V  G++
Sbjct: 293 YCAEKLKRKWISFEIKEDYIEQAILRFSE-QELNSSLKEVSNGRK 336


>gi|253828098|ref|ZP_04870983.1| adenine-specific DNA methylase [Helicobacter canadensis MIT
           98-5491]
 gi|253511504|gb|EES90163.1| adenine-specific DNA methylase [Helicobacter canadensis MIT
           98-5491]
          Length = 238

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 88/225 (39%), Gaps = 27/225 (12%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           + + +L+ L   S+DL F DP Y   L+   Y  +            +    +  ++   
Sbjct: 34  DGLELLQSLGDCSIDLCFFDPQYRGVLDKMRYGNEGERQKG------RSVLVQMSESTII 87

Query: 87  AWLLACRRVLKPNGTLWVIGS-YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
            ++    RVLK +  L +    +H    +   L + +  I++ I W K   M    G R 
Sbjct: 88  HFIQEISRVLKSSRYLMLWIDKFHLCEGVRPWLDSTSLEIVDLITWDK---MKMGMGYRT 144

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
           +   E L+     P     T+          +++      IP          ++  K HP
Sbjct: 145 RKQSEYLLIVQKKPIKAKGTWKLH-------NIRDVCSEKIP----------QNELKAHP 187

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
             KP+ L   ++ S T  GD++ DP  GS +     K+L R+FIG
Sbjct: 188 HSKPKTLQKTLIESCTNIGDLVCDPAAGSFSVLECCKELGRNFIG 232


>gi|153951716|ref|YP_001398660.1| adenine-specific DNA methylase [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152939162|gb|ABS43903.1| adenine-specific DNA methylase [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 820

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/316 (16%), Positives = 113/316 (35%), Gaps = 72/316 (22%)

Query: 1   MSQKNSLAINENQNSIFEWKD-KIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQ 56
           +S++N   + E+  ++ E  + +++K ++   L  L  K    +DLI+ DPP+N      
Sbjct: 355 LSEENYFKLLESFENLDEILNGELVKADNFQALNSLMPKYQGKIDLIYIDPPFNTG---- 410

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
                     +  D  DKF     + +     L   +  L   G+ ++    +  +    
Sbjct: 411 ----------SDFDYKDKFQD-STWLSLMHNRLELAKEFLSDKGSFYLHLDENADYFGRI 459

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGR---------------------RFQNAHETLIW- 154
           +L      +    +   +N   +                         +  N+    +W 
Sbjct: 460 LLNEFFGEMECKKITFDTNATKDEEADLFGYKSFGNNFVLKSSTILFLKKTNSIFNKLWK 519

Query: 155 -----------------------ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
                                         + Y   +   K  +E + ++ + + P+   
Sbjct: 520 PNRNSSLLNLGQLDLIGISTIETPKKITDYEYYVQIWKNGKLCHEKIDIKDEKIYPLGDI 579

Query: 192 SERLRN--------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
              L +         +    + +QKPE +L RI+ SS+    +++D F GSGT+  V+ K
Sbjct: 580 WNDLYSFTQSEMRVSENISFYSSQKPENMLRRIIQSSSDENSVVMDFFVGSGTTLVVSHK 639

Query: 244 LRRSFIGIEMKQDYID 259
           L R ++G+EM + + +
Sbjct: 640 LNRKYLGVEMGEHFYE 655


>gi|295100748|emb|CBK98293.1| DNA modification methylase [Faecalibacterium prausnitzii L2-6]
          Length = 244

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 59/259 (22%), Positives = 87/259 (33%), Gaps = 32/259 (12%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
              + +  ++  P K  DL   DPPY      + Y    S V       D   + + +D 
Sbjct: 13  FNLDCMEGMKAFPDKLFDLAVVDPPYFSGPEHRGY--YGSRVSKTGVHRDYPITPK-WDV 69

Query: 84  FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
             +       RV K    +W    +   F                IVW K N   +F   
Sbjct: 70  PGKDCFNELLRVSKHY-IIWGCNYFDYHFA------------PGRIVWDKCNGGTSFS-- 114

Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
                               +          N  +Q +S     I  G++ L  K   ++
Sbjct: 115 -----------DCEIAATDLFDSVRLFRYMWNGMMQGKSIREGHIQQGNKILNEK---RI 160

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPTQKP AL S I     KPG +ILD   GSG+S   A      F G E+ Q+Y  +  +
Sbjct: 161 HPTQKPVALYSWIFQKYAKPGQMILDTHVGSGSSRIAAYDAGLYFTGFEISQEYFLLQKE 220

Query: 264 RIASVQPLGNIELTVLTGK 282
           R  +     ++       K
Sbjct: 221 RYKAYTAQTDMFHAEGVNK 239


>gi|317181324|dbj|BAJ59108.1| adenine-specific DNA methylase [Helicobacter pylori F57]
          Length = 821

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/148 (31%), Positives = 69/148 (46%), Gaps = 6/148 (4%)

Query: 127 NDIVWRKSNPMPNFRGRRFQN-AHETLIWASP-----SPKAKGYTFNYDALKAANEDVQM 180
           ND      N       ++ +N   E + W        +P    Y       K   +   +
Sbjct: 560 NDFYPIAPNGEEGCWRKKPENLDSEHIFWQENSKGRLTPYEVIYYDEIKNAKKVIKTRTI 619

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
            +++     +  E L   +G KL  T KPEALL RI+  ST+  D++LD F GSGT+ AV
Sbjct: 620 FTEYGTTTEATKEILALFNGTKLFDTPKPEALLKRIIEISTQENDLVLDFFAGSGTTCAV 679

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASV 268
           A KL+R +IGIEM + +  +   R+  V
Sbjct: 680 AHKLKRKYIGIEMGEHFDSVILPRLKKV 707



 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 67/205 (32%), Gaps = 22/205 (10%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
           +N  S  E    +IK  +   L  L     +++D I+ DPPYN Q N  +Y  +      
Sbjct: 366 KNLFSEDEINGTLIKSENYQALNSLKNRYKETIDCIYIDPPYNTQNNEFIYADNFKRSS- 424

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL----NF 123
                        + +     L    ++L   G ++V    +    + T++  +      
Sbjct: 425 -------------WLSMMENRLELAHKLLNNKGVMFVSIDDNEQAYLKTLMDEVFNGGGD 471

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
             +  ++W+K            +  HE ++           T     ++  N+ +  +  
Sbjct: 472 NFVASLIWQKKKGGSQDSENFAK-EHEYILCYQKEKFTIIDTETDHDIQDFNKTINGKQA 530

Query: 184 WLIPICSGSERLRNKDGEKLHPTQK 208
            ++ +          D   L+   K
Sbjct: 531 KILKLEKWGNHSLRTDRPTLYYAIK 555


>gi|67924671|ref|ZP_00518079.1| DNA methylase N-4/N-6 [Crocosphaera watsonii WH 8501]
 gi|67853474|gb|EAM48825.1| DNA methylase N-4/N-6 [Crocosphaera watsonii WH 8501]
          Length = 161

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/101 (43%), Positives = 60/101 (59%), Gaps = 5/101 (4%)

Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
           +     +  N      + W  P      R R ++ EK HPTQKPEALL RI ++S+  GD
Sbjct: 35  YRRAIPQVYNSHKVPGNVWYFPRV----RYRMEEYEK-HPTQKPEALLKRITLASSNVGD 89

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
            ILDPF G+ T+ AVA+KL R  IGIE+++DYI I  +R+ 
Sbjct: 90  TILDPFSGTFTTSAVAQKLGRKSIGIEIEEDYIKIGLRRLG 130


>gi|188528159|ref|YP_001910846.1| adenine-specific DNA methylase [Helicobacter pylori Shi470]
 gi|188144399|gb|ACD48816.1| adenine-specific DNA methylase [Helicobacter pylori Shi470]
          Length = 358

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/148 (31%), Positives = 69/148 (46%), Gaps = 6/148 (4%)

Query: 127 NDIVWRKSNPMPNFRGRRFQN-AHETLIWASP-----SPKAKGYTFNYDALKAANEDVQM 180
           ND      N       ++ +N  +E + W         P    Y       K   +   +
Sbjct: 97  NDFYPIAPNGEEGCWRKKPENLDNEHIFWQENSKGRLIPYEVIYYDEIKNAKKVIKTRTI 156

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
            +++     +  E L   +G KL  T KPEALL RI+  ST+  D++LD F GSGT+ AV
Sbjct: 157 FTEYGTTTEATKEILALFNGTKLFDTPKPEALLKRIIEISTQENDLVLDFFAGSGTTCAV 216

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASV 268
           A KL+R +IGIEM + +  +   R+  V
Sbjct: 217 AHKLKRKYIGIEMGEHFDSVILPRLKKV 244


>gi|309751295|gb|ADO81279.1| Type III restriction-modification system methylase (M.HindVIP)
           [Haemophilus influenzae R2866]
          Length = 667

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 62/312 (19%), Positives = 100/312 (32%), Gaps = 65/312 (20%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP----------------- 60
           + IIKGN++  L  L       V LI+ DPPYN   +G  Y                   
Sbjct: 219 NLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTGNDGFKYNDKFNHSTWLTFMKNRLEI 278

Query: 61  -------DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
                  D  +     D    +      D F R   +      K        G+   +  
Sbjct: 279 AKTLLADDSVIFVQCDDKEQAYLKILMDDIFKRENFINTIVWRKVKSAKIQSGNLPRVKE 338

Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN--AHETLIWASPSPKAKGYTFNYDAL 171
              + +     + N  + R +         + +N   +    +         Y       
Sbjct: 339 YILVYKKSKLSLHNIFLPRNNEKDKKLYRFQDKNGRVYRLSDFTQKGQGEARYFGENLIE 398

Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDG------------------------------- 200
               +      + +         + +K+G                               
Sbjct: 399 PPKGKHWIWTQEKIDEGMKNDLIVFSKNGMPSVKRFLDEKEGIPLSDLWEDDFVQIVSST 458

Query: 201 ---EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
               +    QKPEAL+ RI+  +T   DI+LD   GSGT+ AVA K+ R +IGIE + DY
Sbjct: 459 SSERQDFDGQKPEALIKRIIELTTNESDIVLDYHLGSGTTAAVAHKMNRQYIGIE-QMDY 517

Query: 258 ID-IATKRIASV 268
           I+ +A +R+  V
Sbjct: 518 IETLAVERLKKV 529


>gi|77411475|ref|ZP_00787820.1| adenine specific DNA methyltransferase (mod) [Streptococcus
           agalactiae CJB111]
 gi|77162478|gb|EAO73444.1| adenine specific DNA methyltransferase (mod) [Streptococcus
           agalactiae CJB111]
          Length = 481

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 69/329 (20%), Positives = 108/329 (32%), Gaps = 83/329 (25%)

Query: 21  DKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPD---------------- 61
           + IIKGN++  L  L  K    V LI+ DPPYN   +  +Y                   
Sbjct: 27  NLIIKGNNLLALHTLKDKYAGKVKLIYIDPPYNTGNDSFMYNDRFNHSTWLNFIYNRLSI 86

Query: 62  -HSLVDAVTDSWDKFSSFEAY------------DAFTRAWLLACRRVLKPNGTLWVIGSY 108
            + L+  V   W      E++            + F    +   +   + + T +     
Sbjct: 87  ANELLSEVGSIWLNIDDDESHYLKVLCDELFGRENFIGNIIWEKKFSPQNDATFFSDMHD 146

Query: 109 HNIFRIGTML----------------------QNLNFWILNDIVWR-----KSNPMPNFR 141
           H +     +                            W  +D+  R        P+    
Sbjct: 147 HILVYCKNIDKFKINLLARTEKMNERYKNPDNDPRGPWSSSDLTVRTYSKEYDYPIETPS 206

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP----------ICSG 191
           G+            S    +K  + N       + D   R    +           I   
Sbjct: 207 GKIINPPKGRCWRTSKENLSKLISQNRI-WFGESGDNVPRLKRFLTDVKQGLTPGTIWKH 265

Query: 192 SERLRNKDGEKL-----------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
            E   N++  K              T KPE LL RI+   +  GD++LD F GS T+ AV
Sbjct: 266 QEVSHNQEARKEISRLFEDTEYDFSTPKPEKLLQRIIHIGSNEGDLVLDFFMGSATTQAV 325

Query: 241 AKKLRRSFIGIEMKQDYID-IATKRIASV 268
           A K+ R FIGIE + DYI+ ++  R+  V
Sbjct: 326 AMKMNRRFIGIE-QMDYINTVSVPRLQKV 353


>gi|153806906|ref|ZP_01959574.1| hypothetical protein BACCAC_01182 [Bacteroides caccae ATCC 43185]
 gi|149131583|gb|EDM22789.1| hypothetical protein BACCAC_01182 [Bacteroides caccae ATCC 43185]
          Length = 254

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 87/239 (36%), Gaps = 34/239 (14%)

Query: 39  SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD--------AFTRAWLL 90
              LI AD PYNL  +     P   +     +     +  E +D         F      
Sbjct: 24  KAQLIIADVPYNLGNSAYASNPSWYVDGDNKNGESDKAGKEFFDTDKDFRPAEFMHFCSQ 83

Query: 91  ACRRVLKPNG---TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF-- 145
              +  K  G    + +   + + FR   + +        ++V+RK+      +      
Sbjct: 84  MLVKEPKEKGKAPCMIIFCEFEDQFRYIELGKRYGLNNYINLVFRKNFSAQVLKANMKIV 143

Query: 146 -QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
               +  L++    P      FN D     N       DW++   +           K+H
Sbjct: 144 GNCEYGLLLYRDKLP-----KFNNDGRMIFN-----CFDWVVDNETP----------KVH 183

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
            TQKP  LL R++   T  GD+++DP  GSG++   A +L R   G E+K+ +   A K
Sbjct: 184 STQKPVPLLRRLIEIFTDKGDVVIDPCAGSGSTLLAAAQLGRRAYGFEIKKKFFADANK 242


>gi|329767390|ref|ZP_08258915.1| DNA methylase [Gemella haemolysans M341]
 gi|328836079|gb|EGF85770.1| DNA methylase [Gemella haemolysans M341]
          Length = 157

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 14/166 (8%)

Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
           + V  S   +  +  +     F+     +WRK+NPMP      F N++E  I+ +   K 
Sbjct: 1   MIVFMSILRVETLVEIANEFGFYYKTTGIWRKTNPMPRNMNLHFVNSNECWIYFT--YKT 58

Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
           K  TFN             +   ++     S     +     HPTQKP  L    +   +
Sbjct: 59  KTGTFN------------NKGKLVLDYIETSVTTAREKKLGKHPTQKPIILFEHFIRLLS 106

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
             GD+++DPF GSG+S   + +L R+FI +E+++ Y  +A  R+  
Sbjct: 107 NEGDLVVDPFLGSGSSAIASYRLNRNFIDVELEEKYAKLANMRVED 152


>gi|317181432|dbj|BAJ59216.1| Type II restriction enzyme M protein [Helicobacter pylori F57]
          Length = 134

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 6/120 (5%)

Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
             ++ E +IWA  S K K + FNY+ LK  N D QM   W  P  +  E+   K     H
Sbjct: 1   MTHSAEQIIWARKSHKHK-HVFNYEVLKKINNDKQMHDVWSFPAIAPWEKTNGK-----H 54

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PTQKP ALL R+L+ ++    +I DPF GS T+G  A  L+R FIGIE + +++ I+  R
Sbjct: 55  PTQKPLALLVRLLLMASNENSLIGDPFSGSSTTGIAANLLKRQFIGIEKESEFVKISMDR 114


>gi|308064145|gb|ADO06032.1| adenine-specific DNA methylase [Helicobacter pylori Sat464]
          Length = 348

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/148 (31%), Positives = 69/148 (46%), Gaps = 6/148 (4%)

Query: 127 NDIVWRKSNPMPNFRGRRFQN-AHETLIWASP-----SPKAKGYTFNYDALKAANEDVQM 180
           ND      N       ++ +N  +E + W         P    Y       K   +   +
Sbjct: 87  NDFYPIAPNGEEGCWRKKPENLDNEHIFWQENSKGRLIPYEVIYYDEIKNAKKVIKTRTI 146

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
            +++     +  E L   +G KL  T KPEALL RI+  ST+  D++LD F GSGT+ AV
Sbjct: 147 FTEYGTTTEATKEILALFNGTKLFDTPKPEALLKRIIEISTQENDLVLDFFAGSGTTCAV 206

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASV 268
           A KL+R +IGIEM + +  +   R+  V
Sbjct: 207 AHKLKRKYIGIEMGEHFDSVILPRLKKV 234


>gi|309803500|ref|ZP_07697593.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
           11V1-d]
 gi|308164384|gb|EFO66638.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
           11V1-d]
          Length = 520

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 116/337 (34%), Gaps = 81/337 (24%)

Query: 11  ENQNSIFEWKDKIIKGNSI----SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD----- 61
           E   +  +  + IIKGN++    S+L++   K V  I+ DPPYN   +   Y  +     
Sbjct: 63  ETGITFKDDDNLIIKGNNLIALVSLLKRYEGK-VKCIYIDPPYNTGSDSFNYNDNFNHST 121

Query: 62  ------------HSLVDAVTDSWDKFSSFEAY------------DAFTRAWL-------- 89
                       + L+      W      E +            D F    +        
Sbjct: 122 WLTFMKNRLEASYRLLSDDGSIWINIDDDEVHYLKVLCDEIFGRDNFVANIIWKKKFSPQ 181

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQN--------------LNFWILNDIVWRKSN 135
              R     +  + +       F++  + ++                 W   D   R  N
Sbjct: 182 NDARYFSDMHDHILLFAKNKENFKVNGLPRSEEMDSRYQNLDNDPRGPWTSGDFSVRTYN 241

Query: 136 -------------PMPNFRGRRFQNAHETL--------IWASPSPKAKGYTFNYDALKAA 174
                         +    GR ++ + E          IW             + +    
Sbjct: 242 ESTDYPITTPSGRVVNPPTGRCWRASKEKFDEMVDENRIWFGEDGSNVPRVKRFLSEVKQ 301

Query: 175 NEDVQMRSDWLIPICSGS--ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
           +   Q   D+     +    + L    G+K+  T KPE+LL RI+   +   DIILD F 
Sbjct: 302 SVTPQTIWDYSEVGHNQEAIQNLNKMFGKKIFDTPKPESLLQRIIHIGSNEDDIILDFFT 361

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYI-DIATKRIASV 268
           GSGT+ AVA K+ R +IG+E + DYI DI  +R+  V
Sbjct: 362 GSGTTAAVAHKMGRRYIGVE-QMDYIQDITVERLKKV 397


>gi|19746425|ref|NP_607561.1| hypothetical protein spyM18_1488 [Streptococcus pyogenes MGAS8232]
 gi|19748626|gb|AAL98060.1| hypothetical phage protein [Streptococcus pyogenes MGAS8232]
          Length = 251

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 95/243 (39%), Gaps = 34/243 (13%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS---FEAYDAF-TRAWLLACRRV 95
             LI AD PYNL  N     P      +  +   K +    F+  + F    +     R+
Sbjct: 23  AQLIIADIPYNLGTNAYASDPRWYEKGSNKNGESKLAGKSFFDTDNDFKINNFFDFSARL 82

Query: 96  LKPN----G---TLWVIGSYHNIFRIGTMLQNLNFWILNDIVW-RKSNPMPNFRGRRFQN 147
           LK      G    + V  ++     +    +   F     + + +KS+P       +   
Sbjct: 83  LKKEPKEKGKAPAMIVFHAWQQREMVIACGKKHGFNNAYPLYFTKKSSPQVLKANMKIVG 142

Query: 148 AHE--TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
           A E  T+++    P      FN       N    ++ D   P+              +HP
Sbjct: 143 AVEEATVLYRDKLP-----KFNNGGAMILNHAPWVK-DSSYPV--------------IHP 182

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           TQKP  +L R++   T P D+++DP  GSG++   A ++ R+  G E+K+D+   A + +
Sbjct: 183 TQKPIPVLKRLIEIFTDPDDVVIDPVAGSGSTIRAAIEMNRNAYGFEIKKDFYKRAKEEM 242

Query: 266 ASV 268
            S 
Sbjct: 243 LST 245


>gi|308186460|ref|YP_003930591.1| hypothetical protein Pvag_0949 [Pantoea vagans C9-1]
 gi|308056970|gb|ADO09142.1| hypothetical protein Pvag_0949 [Pantoea vagans C9-1]
          Length = 346

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 84/214 (39%), Gaps = 30/214 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++   + + VL+ +P  SVDLI  DPPY                    D WD ++   E 
Sbjct: 10  ELFNADCLRVLKTMPDDSVDLIVTDPPYF---------------KVKPDGWDNQWKGDED 54

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKPNG++++   +     I  M++   F ILN I+W K +     
Sbjct: 55  YLRWLDCCLADFWRVLKPNGSIYLFSGHRLASDIEIMMR-TRFNILNHIIWAKPDGRWKG 113

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
             +    ++           A+ Y   Y     + +  +++   L P+       R++ G
Sbjct: 114 CNKESLRSYFPA--TERILFAEHYQGPYKPDAYSRKCDELKQQVLTPLIDYFRNARSELG 171

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
                TQ         +V++T   +++   F GS
Sbjct: 172 VTA--TQ---------IVAATGKKNMVSHWFGGS 194



 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 41/71 (57%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A KL 
Sbjct: 262 VPYTDVWTHKPVQFYPGKHPCEKPADMLEQIINASSRPGDVVADFFMGSGSTIKAAIKLG 321

Query: 246 RSFIGIEMKQD 256
           R  IG+E++++
Sbjct: 322 RFAIGVELEEE 332


>gi|307307475|ref|ZP_07587209.1| DNA methylase N-4/N-6 domain protein [Shewanella baltica BA175]
 gi|306910150|gb|EFN40584.1| DNA methylase N-4/N-6 domain protein [Shewanella baltica BA175]
          Length = 356

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 67/172 (38%), Gaps = 11/172 (6%)

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
                   V             +++   E ++          Y  +   +   +   +  
Sbjct: 195 GKVNHGGAVSNWEAGRNTPSRDQYKKICEVILGTGKVDHMPPYE-DIIRVFKMDGTKEFT 253

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
             W  P          +  +  HP +KP  +L   + + +  GDI+LD F GSG++   A
Sbjct: 254 DVWNFPSV--------RPYKGKHPAEKPLDMLKHAIEACSHEGDIVLDCFAGSGSTAVAA 305

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
             L R  + IE+++ +++  ++R+ +++ L   +L  L  ++  P    ++L
Sbjct: 306 LSLGRRSVSIEIEEPWVEGISERLKAIEKLDEEDLANL--EKLPPAAPQDIL 355



 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 15/142 (10%)

Query: 18  EWKDKII-KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + K+ I+  G+S+ +L K+P  S+ LI  DPPY         +  +   D +      F+
Sbjct: 22  KTKNAILAHGDSLELLRKIPDNSISLILTDPPY------HATKKKNIYGDTL------FA 69

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             + Y  +   + +  RRVLK NG+L+         R+  +  ++ F IL+ +VW K N 
Sbjct: 70  QDQHYLEWMNEYAIEWRRVLKQNGSLFCYCDSSMSARLEVLF-SVEFNILSHVVWTKPN- 127

Query: 137 MPNFRGRRFQNAHETLIWASPS 158
            P F G + +   E+L      
Sbjct: 128 EPGFDGWKGKMKKESLRQWYGH 149


>gi|168704008|ref|ZP_02736285.1| helicase domain protein [Gemmata obscuriglobus UQM 2246]
          Length = 752

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 52/280 (18%), Positives = 90/280 (32%), Gaps = 43/280 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I  G+ +  L     + VD     PP+           D             ++ F A+ 
Sbjct: 460 IHLGDCVETLRGFDPECVDYSLFSPPFASLYTYSNSPRDMGNCGT-------YAEFAAHF 512

Query: 83  AFTRAWLLACRRVLKPNGTLWVIG-----SYHNIFRIGTM---------LQNLNFWILND 128
            F  A      RVLKP   +         +  +   IG            Q   F   ++
Sbjct: 513 GFLVA---ELYRVLKPGRLVSFHCMNLPTTKEHHGYIGIQDFRGDLIRQFQAAGFIYHSE 569

Query: 129 IVWRKSNPMPNFRGR----------RFQNAHETLIWASPSPKAKG--------YTFNYDA 170
           +   K       R +          +        I        K         +T +   
Sbjct: 570 VCVWKDPVTAMQRTKALGLLHKQLKKDSCMSRQGIPDFVVTVRKPGVNPAPVSHTNDTFP 629

Query: 171 LKAANED-VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
           +         +  D        + R   ++ ++ H       ++ R L   ++PGD++L 
Sbjct: 630 VDRWQRYASPVWMDIDQSDTLNNYRDARQEQDERHICPLQLGVIERCLELWSRPGDLVLS 689

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           PF G G+ G VA K++R F+G E+K  Y +IAT  +   +
Sbjct: 690 PFAGIGSEGYVALKMKRRFVGCELKPSYFEIATANLRRAE 729


>gi|120436806|ref|YP_862492.1| phage DNA modification methylase [Gramella forsetii KT0803]
 gi|117578956|emb|CAL67425.1| phage DNA modification methylase [Gramella forsetii KT0803]
          Length = 260

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 75/245 (30%), Gaps = 22/245 (8%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I + +++ ++ +   K  DL   DPPY +        P+ S+        D + S    
Sbjct: 27  RITQEDNMELMARAKDKEYDLAIVDPPYGINA------PNMSMGTNKKRKGDGYPSVSVA 80

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
               +  L      LK      +   +          + L     N I+W  +       
Sbjct: 81  QRLKKGRLNQGSGKLKNRALNTMNCEWDFEVPSQEYFKELFRISKNQIIWGGNYFDLPPT 140

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
                     + W    P      +         E      D    +   S        +
Sbjct: 141 R-------CIVCWDKCQPWENFSQW---------EMAWTSFDKPAAMFRFSNTGGANQEK 184

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+HPTQKP  L   +L+    PGD I+D   GSG+       L       E  + Y   +
Sbjct: 185 KIHPTQKPVKLYEYLLMKFGNPGDKIIDTHLGSGSHSIACHNLGFHLDACEKDEQYYKDS 244

Query: 262 TKRIA 266
             R+ 
Sbjct: 245 LNRLK 249


>gi|298737029|ref|YP_003729559.1| modification methylase KpnI [Helicobacter pylori B8]
 gi|298356223|emb|CBI67095.1| Modification methylase KpnI [Helicobacter pylori B8]
          Length = 371

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/148 (31%), Positives = 69/148 (46%), Gaps = 6/148 (4%)

Query: 127 NDIVWRKSNPMPNFRGRRFQN-AHETLIWASP-----SPKAKGYTFNYDALKAANEDVQM 180
           ND      N       ++ +N   E + W         P    Y       K   +   +
Sbjct: 110 NDFYPIAPNGEEGRWRKKPENLDSEHIFWQENSKGRLIPYEVIYYDEIKNAKKVIKTRTI 169

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
            +++     +  E L   +G KL  T KPEAL+SRIL  +T+  D++LD F GSGT+ AV
Sbjct: 170 FTEYGTTTEATKEILALFNGTKLFDTPKPEALISRILEIATQENDLVLDFFAGSGTTCAV 229

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASV 268
           A KL+R +IGIEM + +  +   R+  V
Sbjct: 230 AHKLKRKYIGIEMGEHFDSVILPRLKKV 257


>gi|311070558|ref|YP_003975481.1| putative DNA methylase [Bacillus atrophaeus 1942]
 gi|21759276|sp|O68556|MTB1_BACSU RecName: Full=Modification methylase BglI; Short=M.BglI; AltName:
           Full=BglI modification methyltransferase; AltName:
           Full=N(4)- cytosine-specific methyltransferase BglI
 gi|2952320|gb|AAC63974.1| BglI modification methyltransferase [Bacillus subtilis]
 gi|310871075|gb|ADP34550.1| putative DNA methylase [Bacillus atrophaeus 1942]
          Length = 348

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 57/343 (16%), Positives = 105/343 (30%), Gaps = 94/343 (27%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K+   +G++  +L+ +  +S+ L    PPY++                    +++  ++E
Sbjct: 9   KNSFHEGDARELLKCIEEESIALSVWSPPYHVGKK-----------------YEEGQTYE 51

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWV-------IGSYHNIFRIGTMLQNLNFWILNDIVWR 132
            + +     +     +LKP G L +                    L+     +  + +  
Sbjct: 52  QWSSLLTKVIALHYPILKPGGFLVINIDDILAFPDPRMPRFQAVNLKKHRVSVTREDILN 111

Query: 133 KSNPMPNFRGR----RFQNAHETLIWASPSPKAKGYTFNYD------------ALKAANE 176
                P         +F  + +T+         +G  +N              A + A  
Sbjct: 112 ALKLEPELTKYQLAKKFNCSEQTIERRLKGNNIRGGKYNVQTKVKLAGPVLEKAAEEAGL 171

Query: 177 DVQMRSDWLI-PICSGSERLRN---------------KDGEKL----------------- 203
            +  R  W   P    S+   N               K GE +                 
Sbjct: 172 YLYDRRIWAKDPAWQNSQWHSNSYKAVSEFEHLYIFWKPGETVIDRNKLSKEEWASWASR 231

Query: 204 -------------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
                        H  + P  L  R++   T+ GD +LD F GSGT+   A    R+FIG
Sbjct: 232 GIWYIPSVRKNDDHEAKFPLLLPQRLIKLLTQKGDTVLDCFMGSGTTAVAALSESRNFIG 291

Query: 251 IEMKQDYIDIATK--------RIASVQPLGNIELTVLTGKRTE 285
           IE +  YI ++ K        R      +     +V   K+  
Sbjct: 292 IEKEPKYIQLSNKNVETFYISRNKEASKIKETNHSVTDEKKKA 334


>gi|217032420|ref|ZP_03437914.1| hypothetical protein HPB128_164g20 [Helicobacter pylori B128]
 gi|216945899|gb|EEC24517.1| hypothetical protein HPB128_164g20 [Helicobacter pylori B128]
          Length = 355

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/148 (31%), Positives = 69/148 (46%), Gaps = 6/148 (4%)

Query: 127 NDIVWRKSNPMPNFRGRRFQN-AHETLIWASP-----SPKAKGYTFNYDALKAANEDVQM 180
           ND      N       ++ +N   E + W         P    Y       K   +   +
Sbjct: 94  NDFYPIAPNGEEGRWRKKPENLDSEHIFWQENSKGRLIPYEVIYYDEIKNAKKVIKTRTI 153

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
            +++     +  E L   +G KL  T KPEAL+SRIL  +T+  D++LD F GSGT+ AV
Sbjct: 154 FTEYGTTTEATKEILALFNGTKLFDTPKPEALISRILEIATQENDLVLDFFAGSGTTCAV 213

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASV 268
           A KL+R +IGIEM + +  +   R+  V
Sbjct: 214 AHKLKRKYIGIEMGEHFDSVILPRLKKV 241


>gi|328953515|ref|YP_004370849.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
           11109]
 gi|328453839|gb|AEB09668.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
           11109]
          Length = 546

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 52/215 (24%), Positives = 88/215 (40%), Gaps = 18/215 (8%)

Query: 56  QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKP-NGTLWVIGSYHNIFRI 114
           +  R   ++         KF+  + Y  +   ++    R ++P  G ++ +G   N  R 
Sbjct: 168 RFSRSHDTIFFYAKSEKTKFA--QQYSRYKEDYVKKFYRHIEPETGRIFQLGDLTNPNR- 224

Query: 115 GTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
                        ++ +         R  R+        W                 +  
Sbjct: 225 ----------NRPNLTYEFPPGSGITRVWRWTQEKMMKAWKDGMIVIPEQGGVPRLKRYF 274

Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFG 233
           NE   ++   L  I    E L   + E L +PTQKPEALL RI+ +S+  GD++LDPF G
Sbjct: 275 NE---LKGTLLTDIWVDIEHLHGSNKEWLKYPTQKPEALLYRIIKTSSNEGDVVLDPFCG 331

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            GT+  VA++L+R +IGI++    I +  KR+   
Sbjct: 332 CGTATVVAERLKRRWIGIDITHLAITLIKKRLRDT 366



 Score = 89.7 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 77/184 (41%), Gaps = 41/184 (22%)

Query: 19  WKDKIIKGNSISVLEK-LPAKSVDLIFADPP------YNLQLNGQLYRPDHSLVDAVTDS 71
           W++++  G+++++L + LP++SVDLI+ DPP      YN+    +      + + A  D+
Sbjct: 4   WQNQLYFGDNLNILREYLPSESVDLIYLDPPFNSKATYNVLFAEKSGDASVAQITAFDDT 63

Query: 72  WDKFSSFEA-------------------------------YDAFTRAWLLACRRVLKPNG 100
           W      E                                Y       L+   RVLKP G
Sbjct: 64  WHWGREAEEAFHDLITTGPVKLSHLIAAFRSFLGQNDMMAYIVMMAIRLVELHRVLKPTG 123

Query: 101 TLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
           ++++         I  +L ++       N+I+W++S P  +    RF  +H+T+ + + S
Sbjct: 124 SIYLHCDPTASHYIKLLLDSIFEVKNFRNEIIWKRSQPKAHAVT-RFSRSHDTIFFYAKS 182

Query: 159 PKAK 162
            K K
Sbjct: 183 EKTK 186


>gi|76808626|ref|YP_335016.1| DNA methylase [Burkholderia pseudomallei 1710b]
 gi|254190422|ref|ZP_04896930.1| DNA methylase [Burkholderia pseudomallei Pasteur 52237]
 gi|254258049|ref|ZP_04949103.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei
           1710a]
 gi|76578079|gb|ABA47554.1| DNA methylase [Burkholderia pseudomallei 1710b]
 gi|157938098|gb|EDO93768.1| DNA methylase [Burkholderia pseudomallei Pasteur 52237]
 gi|254216738|gb|EET06122.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei
           1710a]
          Length = 200

 Score = 97.0 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 71/193 (36%), Gaps = 24/193 (12%)

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            +  AWL  CR  LKP G L     +  +  +  ++Q     +    VW K+      R 
Sbjct: 28  DWCHAWLSECRCALKPGGLLVSFIDWRQLPTLTDVVQAAGLILRGVAVWDKTLGRMRLRR 87

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
             F    E ++WAS         +                   +P+             K
Sbjct: 88  GGFAQQAEFVVWASRGAMRGCDVYLPGVFPC-----------RLPLP------------K 124

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            H T+KP   ++R +V     G ++ D F  SGT  A A++    ++G E  Q Y  I++
Sbjct: 125 QHVTEKPLD-IAREVVRLVPAGGVVCDLFAASGTFLAAAREAGLHWVGSESNQAYHAISS 183

Query: 263 KRIASVQPLGNIE 275
            R+ +      ++
Sbjct: 184 ARLDATTDDSGVQ 196


>gi|162450105|ref|YP_001612472.1| hypothetical protein sce1834 [Sorangium cellulosum 'So ce 56']
 gi|161160687|emb|CAN91992.1| hypothetical protein sce1834 [Sorangium cellulosum 'So ce 56']
          Length = 611

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 2/148 (1%)

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
            + +    +RGR +  + E +         +                +M       + + 
Sbjct: 277 YEWHGKRPYRGRFWAFSKEKMDQM--YADGRIVFRRTGMPVYKRYLDEMPGVPFQDVWTD 334

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
                       +PTQKP ALL RI+ SS+K GD++LDPF G GT+   A KL R ++GI
Sbjct: 335 VRLASASTERIGYPTQKPLALLERIIASSSKSGDLVLDPFCGCGTTIEAAHKLGRKWVGI 394

Query: 252 EMKQDYIDIATKRIASVQPLGNIELTVL 279
           ++    IDI   RI ++ P  +   TV+
Sbjct: 395 DITYLSIDIIKGRIDALSPGSDDMYTVI 422



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 70/204 (34%), Gaps = 48/204 (23%)

Query: 22  KIIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD------AVTDSWDK 74
            +  G+++ VL + +  +SVDLI+ DPP+N + N  +   +    D      A  DSW  
Sbjct: 49  TLYYGDNLKVLREHVRDESVDLIYLDPPFNSKRNYNVIYKEPDSSDSVAQKRAFDDSWHW 108

Query: 75  FSSFE-------------------------------------AYDAFTRAWLLACRRVLK 97
             + +                                     AY       ++   RVLK
Sbjct: 109 DFAADAAYRRLVGSGAEERGVPTKLVSLVEAFRIFLGQTDMLAYVVMMAERIVELHRVLK 168

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
             G+L++         +  +L  +       N+IVW++S    +    R+   H+ + + 
Sbjct: 169 RTGSLYLHCDPTASHYLKLVLDAIFGPDNFRNEIVWQRSTAKNDPS--RYGRCHDIIFFY 226

Query: 156 SPSPKAKGYTFNYDALKAANEDVQ 179
           + S +    T        + E   
Sbjct: 227 TKSQEFYWDTQYSPFQDYSVEKNY 250


>gi|331680930|ref|ZP_08381570.1| conserved hypothetical protein [Escherichia coli H299]
 gi|331081918|gb|EGI53076.1| conserved hypothetical protein [Escherichia coli H299]
          Length = 107

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 43/74 (58%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
               G + HPT+KP   L  ++ S T P  I+LDPF GSG++   A +  R +IGIE+ +
Sbjct: 16  WKYSGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 75

Query: 256 DYIDIATKRIASVQ 269
            Y     +R+A+VQ
Sbjct: 76  QYHRAGQQRLAAVQ 89


>gi|76801822|ref|YP_326830.1| modification methylase [Natronomonas pharaonis DSM 2160]
 gi|76557687|emb|CAI49270.1| modification methylase [Natronomonas pharaonis DSM 2160]
          Length = 535

 Score = 96.6 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 64/304 (21%), Positives = 107/304 (35%), Gaps = 82/304 (26%)

Query: 24  IKGNSISVLEKL-------PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
              ++ ++ E L           VD+    PPY    + + Y  D  L   + D      
Sbjct: 21  YNEDTRNLYETLSKAFTDVDDALVDVTITSPPY---ADVKDYGYDEELQVGLGD------ 71

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVI-GSYHNIFR-------IGTMLQNL------- 121
            +E Y    R        V KP+G+LWV+  ++    R       I  + +NL       
Sbjct: 72  DYEDYLEELRDIYKQTYDVTKPDGSLWVVVNTFKKGGRTVRLPTDIADVCENLEDKTTCD 131

Query: 122 -----------------------------NFWILNDIV-WRKSNPMPNFRGRRFQNAHET 151
                                          W+L DIV W K   +P     +F+N  E 
Sbjct: 132 ECGAPLDKDRETGILYCSDDCGFEYDATEGSWVLQDIVIWDKVRALPYSGTGKFRNVFEY 191

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC-----------SGSERLRNKDG 200
           ++  S         F++D  K    D     DW I              +  E +    G
Sbjct: 192 ILCFSKQND-----FHFDLDKIRIADPAEFKDWWIDYPERYHPRGMVPDNIWEMVTPTQG 246

Query: 201 -----EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                   HP   P  L+ RI+  +T+P D++ DPF G+GT    ++ + R  +G E+ +
Sbjct: 247 GWSDMTIDHPAPFPRELVERIVHLTTEPDDVVFDPFGGTGTVLGQSEAMGRWPLGFELSE 306

Query: 256 DYID 259
           ++++
Sbjct: 307 EFVE 310


>gi|325928939|ref|ZP_08190100.1| cation/multidrug efflux pump [Xanthomonas perforans 91-118]
 gi|325540628|gb|EGD12209.1| cation/multidrug efflux pump [Xanthomonas perforans 91-118]
          Length = 624

 Score = 96.6 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 43/156 (27%), Positives = 62/156 (39%), Gaps = 22/156 (14%)

Query: 111 IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
              +  MLQ   F      VW K+  +    G RF+N  E ++W S              
Sbjct: 489 QPAVEGMLQIAGFTWRGITVWDKTEGVRPQLG-RFRNQAEYIVWGSKGNM---------- 537

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
                       D   P+  G  R   +  +K H T KP  L+ R++ S  + G  ILDP
Sbjct: 538 ----------PLDRRAPVLPGVIRESVRKADKHHLTGKPTELMRRLV-SICEAGGQILDP 586

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           F GSGT+   AK     + G+E+   Y ++   R A
Sbjct: 587 FAGSGTTLVAAKLEGYGWTGVEISPHYAEVVRNRFA 622


>gi|331090073|ref|ZP_08338962.1| DNA methylase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330402535|gb|EGG82104.1| DNA methylase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 233

 Score = 96.6 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 85/251 (33%), Gaps = 31/251 (12%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
              N +  + + P K  D+   DPPY    N + Y               ++   + +D 
Sbjct: 7   YNMNCMDGMREFPDKFFDIAVVDPPYFAGPNKRRY--YGRSESTTLIKCREYDIIDTWDV 64

Query: 84  FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
               +     RV + +  +W    +   F                IVW K      F   
Sbjct: 65  PGMEYFDELIRVSR-HQIVWGCNYFDYHF------------GSGRIVWDKCRSNMTF--- 108

Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
               +   + + S     K + + +D +       +        I  G+++       ++
Sbjct: 109 ----SDAEIAYCSLHDTVKTFRYMWDGMMQGKSVDEGW------IQKGNKKTNEH---RI 155

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPTQKP  L   I     KPG  +LD   GS +S     +    ++G E+ +     A K
Sbjct: 156 HPTQKPIDLYRWIAREYIKPGWNVLDTHTGSASSLIAYHEAGIRYVGFEINEKMYQKARK 215

Query: 264 RIASVQPLGNI 274
           R+  V+   +I
Sbjct: 216 RLKEVENQLSI 226


>gi|261837491|gb|ACX97257.1| type IIS m4C methylase [Helicobacter pylori 51]
          Length = 233

 Score = 96.2 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 93/231 (40%), Gaps = 42/231 (18%)

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVI-----------GSYHNIFRIGT-------MLQ 119
           +E Y        L C R LKPNG L +             +++N             +L 
Sbjct: 7   YEDYLLGLLKVWLECYRALKPNGKLCINVPLMPMLKKVLNTHYNRHIFDLHADIQRSILH 66

Query: 120 NLN--------FWILNDIVWRKSNP--------MPNFRGRRFQNAHETLIWASPSPKAKG 163
           +LN         ++L+  +W+++NP         P  R    QN  E +       K K 
Sbjct: 67  DLNNTLENKPKMFLLDIYIWKRANPTKRLMFGSYPYPRDFYAQNTIEFIGVFVKDGKPKQ 126

Query: 164 YTFNYDALKAANEDVQ---MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
            T          ++      +  W IPI + ++    K     H    P  L  R++   
Sbjct: 127 PTEEQKEQSQLTQEEWVEFTKQIWEIPIPNKNDIAFGK-----HAALMPAELARRLIRLY 181

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           +  GD++LDPF GSGT+   AK L+R+FIG E+ ++Y  +  +++ ++   
Sbjct: 182 SCVGDVVLDPFSGSGTTLREAKLLKRNFIGYELYENYKPLIEQKLGNLFDF 232


>gi|257455090|ref|ZP_05620329.1| DNA methylase N-4/N-6 domain protein [Enhydrobacter aerosaccus
           SK60]
 gi|257447505|gb|EEV22509.1| DNA methylase N-4/N-6 domain protein [Enhydrobacter aerosaccus
           SK60]
          Length = 572

 Score = 96.2 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 68/321 (21%), Positives = 111/321 (34%), Gaps = 73/321 (22%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD---------------- 61
           + II+G+++  L+ L       V  IF DPPYN Q   + Y                   
Sbjct: 39  NLIIQGDNLQALKALLPLYGGQVKCIFIDPPYNTQSAFEHYDDKLEHAQWLSMMYPRLQL 98

Query: 62  -----------HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
                         +D     + K    E +        +     ++  G       +HN
Sbjct: 99  LKDLLHDTGSIWITLDDNESHYLKVMCDEIFGRRNFMGNIIWNHSVQAKGYAGKFSIHHN 158

Query: 111 IFRIG-----TMLQNLNFWILNDIVWRKSNPMPNFRGR----RFQNAHETLIWASPSPK- 160
              +       +L+NL     +++ +   +  P  R R    R       L++   +P  
Sbjct: 159 HILVYRKSDSFLLKNLGRTEEHNVNYSNPDDDPKGRWRSGDVRNALVRPNLMYNITTPNG 218

Query: 161 ------AKGYTFNYDALKAA----------------NEDVQMRSDWLIP----------- 187
                  KG+ F+ +  +                   +      D  +P           
Sbjct: 219 NIIEHPVKGWRFSKETFERELAEGKIIFSEDETRIIRKIYLCDQDGRVPESLWFADEAGT 278

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
               S  L+N   +++  T KPE L+ RIL  ST   D++LD F GSGT+ AVA K+ R 
Sbjct: 279 TRDASSELKNLFEDEIFETPKPEKLIERILSISTSENDLVLDSFLGSGTTAAVAHKMTRR 338

Query: 248 FIGIEMKQDYIDIATKRIASV 268
           +IGIEM +        R+  V
Sbjct: 339 YIGIEMGEHSKTHVIPRLIKV 359


>gi|167847537|ref|ZP_02473045.1| DNA methylase [Burkholderia pseudomallei B7210]
          Length = 304

 Score = 96.2 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 71/193 (36%), Gaps = 24/193 (12%)

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            +  AWL  CR  LKP G L     +  +  +  ++Q     +    VW K+      R 
Sbjct: 132 DWCHAWLSECRCALKPGGLLVSFIDWRQLPTLTDVVQAAGLILRGVAVWDKTLGRMRLRR 191

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
             F    E ++WAS         +                   +P+             K
Sbjct: 192 GGFAQQAEFVVWASRGAMRGCDVYLPGVFPC-----------RLPLP------------K 228

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            H T+KP   ++R +V     G ++ D F  SGT  A A++    ++G E  Q Y  I++
Sbjct: 229 QHVTEKPLD-IAREVVRLVPAGGVVCDLFAASGTFLAAAREAGLHWVGSESNQAYHAISS 287

Query: 263 KRIASVQPLGNIE 275
            R+ +      ++
Sbjct: 288 ARLDATTDDSGVQ 300


>gi|207108433|ref|ZP_03242595.1| type II DNA modification (methyltransferase [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 244

 Score = 96.2 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/85 (45%), Positives = 52/85 (61%), Gaps = 2/85 (2%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           W IPI   +   R K+ E L  TQKPE LL RI+ +S+    I+LD F GSGT+ AVA K
Sbjct: 48  WNIPIIGSTSTERVKNNENL--TQKPEKLLERIIQASSDENSIVLDFFAGSGTTCAVAHK 105

Query: 244 LRRSFIGIEMKQDYIDIATKRIASV 268
           L+R +IGIEM + +  +   R+  V
Sbjct: 106 LKRKYIGIEMGEHFDSVILPRLKKV 130


>gi|323698906|ref|ZP_08110818.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio sp. ND132]
 gi|323458838|gb|EGB14703.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio desulfuricans
           ND132]
          Length = 242

 Score = 96.2 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 88/244 (36%), Gaps = 27/244 (11%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I   ++   L   PA   + I  DPPY + +  + +      +D +              
Sbjct: 21  IHNNDAYLFLGNCPAHRYEAIITDPPYEIGIASKEWDCKELQIDVLA------------- 67

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP-MPNFR 141
                      RVLKP G ++V  S    F+ GT  + L+ +      +    P    + 
Sbjct: 68  -------YQFHRVLKPGGNVFVFCSD---FQFGTWYRELSRYFTKLRKYAWCKPDSVGYN 117

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
              FQ + E  + A            Y       +          P     E  + K  +
Sbjct: 118 KGMFQESFELGLHACSDDSYFDMGNYYKNHTVIGKTSGKERIMPDP---DEEWTKGKGSK 174

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
            LHPTQK   ++  ++ + +K GD ILDPF G+GT    AK+L R F  I+        A
Sbjct: 175 ALHPTQKSLEVIKNLVSALSKEGDTILDPFSGTGTLRVAAKQLGRKFEMIDYGFRNHIAA 234

Query: 262 TKRI 265
             RI
Sbjct: 235 WDRI 238


>gi|220934219|ref|YP_002513118.1| DNA methylase N-4/N-6 domain-containing protein [Thioalkalivibrio
           sp. HL-EbGR7]
 gi|219995529|gb|ACL72131.1| DNA methylase N-4/N-6 domain-containing protein [Thioalkalivibrio
           sp. HL-EbGR7]
          Length = 330

 Score = 96.2 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 58/286 (20%), Positives = 100/286 (34%), Gaps = 67/286 (23%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           L +   K V+LIF  PP+ L    +                      E+Y  +   +   
Sbjct: 52  LARFEGK-VNLIFTSPPFPLNRKKRYGNETG----------------ESYIRWLCTFGPL 94

Query: 92  CRRVLKPNGTL-------WVIGSYHNI---FRIGTMLQNLNF-WILNDIVWRKSNPMPNF 140
            +++L P+G++       W  GS        R     Q+ N  ++  + +W+    +P+ 
Sbjct: 95  FKKMLTPDGSIVIEMGNSWEPGSPVMSTLALRALLEFQSKNDLYLCQEFIWQNPAKLPSP 154

Query: 141 RGR------RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
                    R +++   L W SP+ K K          + +    ++          SE 
Sbjct: 155 AQWVNVERIRVKDSFTKLWWLSPNEKPKASNQRVLQEYSKSMKDLLKKGSYNAGKRPSEH 214

Query: 195 ---------------------------------LRNKDGEKLHPTQKPEALLSRILVSST 221
                                                +  +LHP + P  L    +   T
Sbjct: 215 DIGETSFLKNNGGAIPSNVLTYANTLASDAYQTYCRNNQFQLHPARMPSDLAKFFIKFLT 274

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           +PGDI+LDPF GS T+G  A+ L R +I IE  ++YI  +  R  +
Sbjct: 275 EPGDIVLDPFGGSNTTGCAAENLERFWISIEASEEYIKGSRGRFGN 320


>gi|284097643|ref|ZP_06385677.1| DNA methylase N-4/N-6 domain protein [Candidatus Poribacteria sp.
           WGA-A3]
 gi|283830846|gb|EFC34922.1| DNA methylase N-4/N-6 domain protein [Candidatus Poribacteria sp.
           WGA-A3]
          Length = 142

 Score = 96.2 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 1/105 (0%)

Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKP 223
             +     + + +  M  +  +   +G      +  +++ HP   P  L  R +   +  
Sbjct: 19  YKDQWKKTSGSGESDMNREEFMEWTNGLWTFPGESKKRIGHPAPFPIELPRRCIKLFSYV 78

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           GD +LDPF GSGT+   A   +R  IGIE+ +DY  +A  RI   
Sbjct: 79  GDTVLDPFMGSGTTLVAACANKRYGIGIEVDRDYCKLAKDRIGQA 123


>gi|237508020|ref|ZP_04520735.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei
           MSHR346]
 gi|235000225|gb|EEP49649.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei
           MSHR346]
          Length = 378

 Score = 96.2 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 9/89 (10%)

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
             RS W IP  S          +  H    PEAL+   +++ ++PGD++ DPFFGSGT+G
Sbjct: 291 NRRSVWTIPTQSF---------DGAHFATFPEALVEPCVLAGSRPGDVVFDPFFGSGTTG 341

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            VA++L R FIG E+  DY  +   R+  
Sbjct: 342 QVAQRLGRRFIGCELNPDYEPLQRDRLRQ 370



 Score = 73.5 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 67/204 (32%), Gaps = 54/204 (26%)

Query: 17  FEWKDKIIKGNSISVLEKL-PAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
             W D+  +G+   ++  +      V  I   PPY      + Y PD             
Sbjct: 1   MNWLDQSHRGDCRDLMRAMIADGVRVQTIVTSPPY---WGLRSYLPDGHPDKG--REIGS 55

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLW-VIGSYH------------------------ 109
            S+   +          CR++L  +GTLW  +G  +                        
Sbjct: 56  ESTLREFIDTLVGVFELCRQLLVDDGTLWLNMGDAYASSGGQTPMRGETFAGRARAKENI 115

Query: 110 -------------------NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
                                +R+   LQ+  +++  DI+W K NPMP     R   AHE
Sbjct: 116 CLSNRKAGIDGLKVKDLMGQPWRLAFALQDAGWYLRQDIIWHKPNPMPESVRDRCTKAHE 175

Query: 151 TLIWASPSPKAKGYTFNYDALKAA 174
            L   S    ++ Y +++ A++  
Sbjct: 176 YLFLLSK---SERYYYDFHAMQEP 196


>gi|331703800|ref|YP_004400487.1| adenine specific DNA methylase [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|328802355|emb|CBW54509.1| Adenine specific DNA methylase [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 239

 Score = 96.2 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 97/252 (38%), Gaps = 31/252 (12%)

Query: 6   SLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV 65
            L  +  +N   E+  K    + + +L  +   ++ ++F DP Y   L+   Y  +    
Sbjct: 17  ELGKDIFKNERMEFNHK-YGLDGLVILNNIKDNAIPVVFFDPQYRGVLDKLSYGNEGKRQ 75

Query: 66  DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS-YHNIFRIGTMLQNLNFW 124
             +  S  +  + E    F R       RVL P G L++    +H    I   +++ +  
Sbjct: 76  --IKRSELQQMTEEKIIHFIR----EMDRVLIPTGHLFLWVDKFHLCQGISDWIKDTSLS 129

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
           I++ IVW K        G R +   E LI     P      +             +R  W
Sbjct: 130 IVDMIVWDKDK---MGMGYRTRRQCEYLIVLQKKPIRAKDVW---------RLRNIRDVW 177

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
              I            +K+HP QKP  L   ++ + + PGD+I+D   GS +      + 
Sbjct: 178 KEKIV-----------DKVHPHQKPIELQKILIQAVSNPGDVIMDVAAGSFSVLTSCIET 226

Query: 245 RRSFIGIEMKQD 256
            R FIG ++K+ 
Sbjct: 227 GRLFIGTDIKEK 238


>gi|261839365|gb|ACX99130.1| hypothetical protein HPKB_0530 [Helicobacter pylori 52]
          Length = 345

 Score = 96.2 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 47/148 (31%), Positives = 69/148 (46%), Gaps = 6/148 (4%)

Query: 127 NDIVWRKSNPMPNFRGRRFQN-AHETLIWASP-----SPKAKGYTFNYDALKAANEDVQM 180
           ND      N       ++ +N   E + W         P    Y       K   +   +
Sbjct: 84  NDFYPIAPNGEEGCWRKKPENLDSEHIFWQENSKGRLIPYEVIYYDEIKNTKKVVKTRTI 143

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
            +++     +  E L   +G KL  T KPEAL+SRIL  ST+  D++LD F GSGT+ AV
Sbjct: 144 FTEYGTTTDATKEILVLFNGTKLFDTPKPEALISRILEISTQENDLVLDFFAGSGTTCAV 203

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASV 268
           A KL+R +IGIEM + +  +   R+  V
Sbjct: 204 AHKLKRKYIGIEMGEHFERVILPRLKKV 231


>gi|315453000|ref|YP_004073270.1| DNA modification methyltransferase [Helicobacter felis ATCC 49179]
 gi|315132052|emb|CBY82680.1| DNA modification methyltransferase,XbaI methylase [Helicobacter
           felis ATCC 49179]
          Length = 271

 Score = 95.8 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 69/164 (42%), Gaps = 22/164 (13%)

Query: 104 VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
              S  + ++  T+ ++ +     D + ++       + R  +N    ++ A        
Sbjct: 16  FFYSKTDHYKFNTLFKDYSPTTNIDQILQQRERNAKGKCRYKRNTEGAIVMAK------- 68

Query: 164 YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKP 223
                         V +   W IP  +   +         +PTQKP  LL R++  ST  
Sbjct: 69  ----------EKRGVPLSDVWEIPFLNPKAK-----ERVGYPTQKPIELLERLIQISTDE 113

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            DIILDPF GSGT+   AK L R +IGI++ Q+ I +  +R+  
Sbjct: 114 NDIILDPFCGSGTTLVSAKLLHREYIGIDISQEAIHLTQQRLDK 157


>gi|317181087|dbj|BAJ58873.1| putative type III restriction enzyme M protein [Helicobacter pylori
           F32]
          Length = 601

 Score = 95.8 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 68/320 (21%), Positives = 117/320 (36%), Gaps = 73/320 (22%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPP---------YNLQLNGQLY--------- 58
            + +IKGN++  L  L    AK V  I+ DPP         YN   N   +         
Sbjct: 164 TNYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNYNDNFNHSSWLVFMKNRLE 223

Query: 59  -----------------RPDHSLVDAVTDS------------WDKFSS-----------F 78
                              + + +  + D             W +F S            
Sbjct: 224 VAREFLSDDGVIFVQCDDNEQAYLKVLMDEIFLRENFVGCISWKQFHSVKNDAANFSKNI 283

Query: 79  EAYDAFTRAWLLACRRVLKPNGT-LWVIGSYHNIFRIGTMLQNLNFWILNDIVWR---KS 134
           E    + + +          + + L+ +   +  +++  +         +         S
Sbjct: 284 EYILCYCKNFSKNLISNEPFDKSNLYKLKDENGFYKLDPVWAKSGNNFSSYTFLNGKTWS 343

Query: 135 NPMPNFRGR-----RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
            P   F        +    +  +++   +P AK Y  +  A    +      S+    + 
Sbjct: 344 PPSGTFWRYSIGTLKDMEQNNRIVFNGKNPMAKRY-LSEVAEGRKSSTFWDGSEVGYNLN 402

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
             +E  +  +G K+    KPEAL+SRIL  ST   D++LD F GSGT+ AVA K++R +I
Sbjct: 403 GDAEIKQLFNGNKVFNNPKPEALISRILEVSTNENDLVLDFFAGSGTTCAVAHKMKRRYI 462

Query: 250 GIEMKQDYID-IATKRIASV 268
           GIE + DYI+ I  +R+  V
Sbjct: 463 GIE-QMDYIETITKERLKKV 481


>gi|17975218|ref|NP_536413.1| putative DNA cytosine methylase [Burkholderia phage phiE125]
 gi|17484079|gb|AAL40330.1|AF447491_58 gp56 [Burkholderia phage phiE125]
          Length = 378

 Score = 95.8 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 9/89 (10%)

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
             RS W IP  S          +  H    PEAL+   +++ ++PGD++ DPFFGSGT+G
Sbjct: 291 NRRSVWTIPTQSF---------DGAHFATFPEALVEPCVLAGSRPGDVVFDPFFGSGTTG 341

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            VA++L R FIG E+  DY  +   R+  
Sbjct: 342 QVAQRLGRRFIGCELNPDYEPLQRDRLRQ 370



 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 68/204 (33%), Gaps = 54/204 (26%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDL--IFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
            +W D+  +G+   ++  + A  V +  I   PPY      + Y PD            +
Sbjct: 1   MDWLDRSHRGDCRDLMRAMAADGVRVQTIVTSPPY---WGLRSYLPDGHPDKH--REIGQ 55

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLW-VIGSYH------------------------ 109
             +   +           R +L  +GTLW  +G  +                        
Sbjct: 56  EPTLREFINTLVGVFDLARALLADDGTLWLNMGDAYASSGGQTPMRGETFAGRARAKENI 115

Query: 110 -------------------NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
                                +R+   LQ+  +++  DI+W K NPMP     R   AHE
Sbjct: 116 CLSNRKAGIDGLKVKDLMGQPWRLAFALQDAGWYLRQDIIWHKPNPMPESVRDRCTKAHE 175

Query: 151 TLIWASPSPKAKGYTFNYDALKAA 174
            L   S    ++ Y +++ A++  
Sbjct: 176 YLFLLSK---SERYYYDFHAMQEP 196


>gi|213417795|ref|ZP_03350907.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 103

 Score = 95.8 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 36/100 (36%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G++++ L+KLP++S+DLIFADPPYN+  +           D + +SWD+ S    +
Sbjct: 16  KIIHGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDEAS----F 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
            A+    +  C RVLK +GT++++ S  N+  I    + L
Sbjct: 62  LAWLYECIDECHRVLKKHGTMYIMNSTENMPYIDLKCRTL 101


>gi|153951550|ref|YP_001398640.1| modification methylase BslI [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152938996|gb|ABS43737.1| modification methylase BslI [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 413

 Score = 95.8 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 55/331 (16%), Positives = 96/331 (29%), Gaps = 102/331 (30%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
           +K  + IN+  N       KII G+    L+K+ ++S+  +   PPY             
Sbjct: 85  EKLDIFINDKTNK------KIIWGDCFKTLKKMKSESIACMVTSPPY------------- 125

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG-TLWVIGSYHNI---------- 111
                    + K+ +   Y A  +  L  C RVL  +   ++ +G   +           
Sbjct: 126 ----YNAREYAKWDNLNTYFADMKKILKECYRVLDNHRVFIFNVGDIFDNDNLFTTSTWG 181

Query: 112 -------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR---------RFQNAHETLIWA 155
                       + + + F  ++DI+W K                      N +E ++  
Sbjct: 182 KRRLPLGAYFINLFEKVGFTFVDDIIWDKGEVQSQRHKNGDKPYPFYQYPMNCYEHILVF 241

Query: 156 SPSPKAK-------------------------------------------------GYTF 166
               +                                                    +T 
Sbjct: 242 HKHRQDNLRYPCPVCGCLQVNGNAYTEKGLKSWECKNLDCFERSAANRGKRFSAKTYFTQ 301

Query: 167 NYDALKAANEDVQMRSDWLIPICSGS---ERLRNKDGEKLHPTQKPEALLSRILVSSTKP 223
           N    + +  D      W   I   +   +    K     H    P+ +    +   +  
Sbjct: 302 NEAFNQNSQIDKDFIYVWRRDIKKINPVIKINSKKQNFLGHSAPFPKEIPEFAIRMFSYK 361

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           G+ +LDPF G GTS  VA +L R  IGIE  
Sbjct: 362 GEKVLDPFMGIGTSVKVANELGRIGIGIERD 392


>gi|83716880|ref|YP_439226.1| gp56 [Burkholderia thailandensis E264]
 gi|257142349|ref|ZP_05590611.1| gp56 [Burkholderia thailandensis E264]
 gi|83650705|gb|ABC34769.1| gp56 [Burkholderia thailandensis E264]
          Length = 378

 Score = 95.8 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 9/89 (10%)

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
             RS W IP  S          +  H    PEAL+   +++ ++PGD++ DPFFGSGT+G
Sbjct: 291 NRRSVWTIPTQSF---------DGAHFATFPEALVEPCVLAGSRPGDVVFDPFFGSGTTG 341

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            VA++L R FIG E+  DY  +   R+  
Sbjct: 342 QVAQRLGRRFIGCELNPDYEPLQRDRLRQ 370



 Score = 70.4 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 65/207 (31%), Gaps = 60/207 (28%)

Query: 17  FEWKDKIIKGNSISVLEKL-PAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
             W D+  +G+   ++  +      V  I   PPY        +     L D   D   +
Sbjct: 1   MNWLDRSHRGDCRDLMRAMIADGVKVQTIVTSPPY--------WGLRSYLPDGHPDKHRE 52

Query: 75  FSSFEAYDAFTR---AWLLACRRVLKPNGTLW-VIGSYH--------------------- 109
             S      F           R +L  +GTLW  +G  +                     
Sbjct: 53  IGSEPTLREFINTLVGVFDLARALLADDGTLWLNMGDAYASSGGQTPMRGETFAGRARAK 112

Query: 110 ----------------------NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
                                   +R+   LQ+  +++  DI+W K NPMP     R   
Sbjct: 113 ENICLSNRKAGIDGLKVKDLMGQPWRLAFALQDAGWYLRQDIIWHKPNPMPESVRDRCTK 172

Query: 148 AHETLIWASPSPKAKGYTFNYDALKAA 174
           AHE L   S    ++ Y +++ A++  
Sbjct: 173 AHEYLFLLSK---SERYYYDFHAMQEP 196


>gi|167743449|ref|ZP_02416223.1| DNA methylase [Burkholderia pseudomallei 14]
 gi|167907411|ref|ZP_02494616.1| DNA methylase [Burkholderia pseudomallei NCTC 13177]
          Length = 87

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/76 (42%), Positives = 50/76 (65%), Gaps = 1/76 (1%)

Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           RL  +  E++ HPTQKP  ++ R++++S  PG  +LDPF GSGT+     + RR F+G E
Sbjct: 3   RLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQRRGFVGYE 62

Query: 253 MKQDYIDIATKRIASV 268
           + + Y  IA +R+AS+
Sbjct: 63  INESYCAIARERVASL 78


>gi|308064158|gb|ADO06045.1| type III R-M system methyltransferase [Helicobacter pylori Sat464]
          Length = 601

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 78/388 (20%), Positives = 136/388 (35%), Gaps = 77/388 (19%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPP---------YNLQLNGQLY--------- 58
            + +IKGN++  L  L    AK +  I+ DPP         YN   N   +         
Sbjct: 164 TNYLIKGNNLIALHSLKKKFAKQIKCIYIDPPYNTGNDSFNYNDNFNHSSWLVFMKNRLE 223

Query: 59  -----------------RPDHSLVDAVTDS------------WDKFSS-----------F 78
                              + + +  + D             W +F S            
Sbjct: 224 AAREFLSDDGVIFVQCDDNEQAYLKVLMDEIFLRENFVGCISWKQFHSVKNDAANFSKNI 283

Query: 79  EAYDAFTRAWLLACRRVLKPNGT-LWVIGSYHNIFRIGTMLQNLNFWILNDIVWR---KS 134
           E    + + +          + + L+ +   +  +++  +                   S
Sbjct: 284 EYILCYCKNFSKNLISNEPFDKSNLYKLKDENGFYKLDPVWAKSGNNFSPYTFLNGKTWS 343

Query: 135 NPMPNFRGR-----RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
            P   F        +    +  +++   +P AK Y  +  A    +      S+    + 
Sbjct: 344 PPSGTFWRYSIGTLKDMEQNNRIVFNGKNPMAKRY-LSEVAEGKKSSTFWDGSEVGYNLN 402

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
             +E  +  +G K+    KPEAL+SRIL  ST   D++LD F GSGT+ AVA K++R +I
Sbjct: 403 GDAEIKQLFNGNKVFNNPKPEALISRILEVSTNENDLVLDFFAGSGTTCAVAHKMKRRYI 462

Query: 250 GIEMKQDYID-IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNA 308
           GIE + DYI+ I  +R+  V       ++     +      F  L E  L    QIL   
Sbjct: 463 GIE-QMDYIETITKERLKKVIEGEQGGISKKCDFKGGGSFVFAELKEVNLEVKKQILNAK 521

Query: 309 QGNISATVCADGT----LISGTELGSIH 332
             +    +  D +      +  ++G IH
Sbjct: 522 SKSECLKIFNDLSERFLKRADCKIGEIH 549


>gi|317011742|gb|ADU85489.1| modification methylase KpnI [Helicobacter pylori SouthAfrica7]
          Length = 360

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 6/148 (4%)

Query: 127 NDIVWRKSNPMPNFRGRRFQN-AHETLIWASP-----SPKAKGYTFNYDALKAANEDVQM 180
           ND      N       ++ +N   E + W        +P    Y       K   +   +
Sbjct: 99  NDFYPIAPNGEEGRWRKKPENLDSEHIFWQENSKGRLTPYEVIYYDEIKNAKKVIKTRTI 158

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
            +++     +  E L   +G KL  T KPEALL RIL  STK  D++ D F GSGT+ AV
Sbjct: 159 FTEYGTTTEATKEILALFNGTKLFDTPKPEALLQRILEISTKENDLVCDFFAGSGTTCAV 218

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASV 268
           A KL+R +IGIEM + +  +   R+  V
Sbjct: 219 AHKLKRKYIGIEMGEHFDSVILPRLKKV 246


>gi|117924582|ref|YP_865199.1| DNA methylase N-4/N-6 domain-containing protein [Magnetococcus sp.
           MC-1]
 gi|117608338|gb|ABK43793.1| DNA methylase N-4/N-6 domain protein [Magnetococcus sp. MC-1]
          Length = 271

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/270 (20%), Positives = 86/270 (31%), Gaps = 44/270 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
              +   ++ + +  L  +SV L+   PPY                  VT  + K  +FE
Sbjct: 5   THTVYYADNNN-MHLLEDESVHLVVTSPPY------------------VTTEFKKGQAFE 45

Query: 80  AYDAFTRAWLLAC---RRVLKPNGTL-WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            YD F  A+   C    +VL P G     +      +R           + +D++    N
Sbjct: 46  -YDLFLDAFSSVCSSLFKVLVPGGRFALNVADVITKYRYKDSSLMARAPLGSDLLQVAQN 104

Query: 136 PMPNFRGRRFQNAHETL--------IWASPSPKAKGYTFNYDALKAANEDVQMRS----- 182
               F  R   +   T          +  P        F Y  +        ++      
Sbjct: 105 SGFRFLERYIWDKGYTRNFGGPLLGSFPFPLTVYNNNYFEYIYILYKPGKRTVKQSVRKS 164

Query: 183 ------DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
                 +W I            +    H    P  +  RI+   +  GD ILDP+ GSG 
Sbjct: 165 SEFSLEEWRIWTQQWWRVESITEKFDYHRAVFPIEIPYRIIRMYSYVGDTILDPYLGSGA 224

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           +   +    RS IG E+ +   DI   RI 
Sbjct: 225 TMIASYLTNRSSIGFEI-ESCDDIVKHRIE 253


>gi|256384315|gb|ACU78885.1| GANTC--recognizing Type II restriction modification system (MmyCIV)
           adenine DNA methylase subunit [Mycoplasma mycoides
           subsp. capri str. GM12]
 gi|256385148|gb|ACU79717.1| GANTC--recognizing Type II restriction modification system (MmyCIV)
           adenine DNA methylase subunit [Mycoplasma mycoides
           subsp. capri str. GM12]
 gi|296455587|gb|ADH21822.1| GANTC--recognizing Type II restriction modification system (MmyCIV)
           adenine DNA methylase subunit [synthetic Mycoplasma
           mycoides JCVI-syn1.0]
          Length = 239

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 96/252 (38%), Gaps = 31/252 (12%)

Query: 6   SLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV 65
            L  +  +N   E+  K    + + +L  +   ++ ++F DP Y   L+   Y  +    
Sbjct: 17  ELGKDIFKNERMEFNHK-YGLDGLVILNNIKDNAIPVVFFDPQYRGVLDKLSYGNEGKRQ 75

Query: 66  DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS-YHNIFRIGTMLQNLNFW 124
             +  S  +  + E    F R       RVL P G L++    +H    I   +++ +  
Sbjct: 76  --IKRSELQQMTEEKIVHFIR----EMDRVLIPTGHLFLWVDKFHLCQGISDWIKDTSLS 129

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
           I++ IVW K        G R +   E LI     P      +             +R  W
Sbjct: 130 IVDMIVWDKEK---MGMGYRTRRQCEYLIVLQKKPIRAKNVW---------RLRNIRDVW 177

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
              I             K+HP QKP  L   ++ + + PGD+I+D   GS +      + 
Sbjct: 178 KEKIVG-----------KVHPHQKPIELQKILIQAVSNPGDVIMDVAAGSFSVLTSCIET 226

Query: 245 RRSFIGIEMKQD 256
            R FIG ++K+ 
Sbjct: 227 GRLFIGTDIKEK 238


>gi|313667103|gb|ADR72998.1| M.BstEII [Geobacillus stearothermophilus]
          Length = 433

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 60/341 (17%), Positives = 117/341 (34%), Gaps = 73/341 (21%)

Query: 18  EWKDKIIKGNSISVLEKLPAKS-----VDLIFADPPYNLQLNGQLYRPDHSLVDAV---- 68
           ++ ++II G+++ +L  L         V LI+ DPPY    + +    +H+  D +    
Sbjct: 51  DYYNQIIFGDNLYILRTLLDNKDIVGKVRLIYIDPPYGTNSSFKSRSQEHAYDDNLIGDK 110

Query: 69  ----------------TDSWDKFSSFEAYDAF--------------TRAWLLACRRVLKP 98
                            D    +   +++ AF               R W+   +   K 
Sbjct: 111 YLEFIRQRLILMRELLADDGSIYVHLDSHMAFPVKIIMDEVFGQQNFRNWITRQKCNPKN 170

Query: 99  N-----GTL------------WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                 G +            +V       +   T  +   +         K  P+    
Sbjct: 171 YTRKQYGNISDYILFYSKTKNYVFNQPFQPWDEETAKKEYPYVEEETGRRFKKVPLHAPG 230

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW---------------LI 186
            R  +          P  K   YT +       N ++    +                + 
Sbjct: 231 IRNGETGKAWRGILPPPGKHWQYTPSKLDEMDKNGEIYWSPNGNPRRKVYLDNSKGIPVQ 290

Query: 187 PICSGSERLRNKDGE-KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
            I    +   N++ +   +PT+K   +L +I+++S+  GDI+LD F GSGT+ AVA++ R
Sbjct: 291 DIWLNFKDAHNQNAKITGYPTEKNPNMLKQIILASSNEGDIVLDAFAGSGTTIAVAEEHR 350

Query: 246 RSFIGIEMKQDYIDIATKRIAS-VQPLGNIELTVLTGKRTE 285
           R +I I+     I     R+ +  + +G+        ++ E
Sbjct: 351 RKWIAIDNSSLAIKTMLNRLINGTKKMGDFVKKEFETEQLE 391


>gi|110668022|ref|YP_657833.1| site-specific DNA-methyltransferase [Haloquadratum walsbyi DSM
           16790]
 gi|109625769|emb|CAJ52204.1| site-specific DNA-methyltransferase [Haloquadratum walsbyi DSM
           16790]
          Length = 988

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 58/309 (18%), Positives = 109/309 (35%), Gaps = 81/309 (26%)

Query: 21  DKIIKGNSI---SVLEKLPAK----SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           D+II+G+S      LE++ ++     +DL    PPY    +  +           +    
Sbjct: 458 DEIIRGDSRYLEKYLERVMSENLCGKIDLAITSPPYFDLKDYDV---------ETSSQIG 508

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNI-------FRIGTMLQNLN--- 122
           +  S++ Y       L     V+  +G+L  ++ ++            I  + Q+L+   
Sbjct: 509 QGDSYQQYLLDLETVLKQVYNVVSDDGSLWVIVNNFQTNQQVVDLPGDIINLCQSLSVQE 568

Query: 123 --------------------------------------FWILNDIVWRKSNPMPNFRGRR 144
                                                 + + + IVW K++ +P  +  +
Sbjct: 569 HCPNCSTDEITVPLTKGESATSRSCVNCEFQSDSHSTAWNLRDIIVWDKNHALPYVKNGQ 628

Query: 145 FQNAHETLIWASP--------------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           F+N  E ++  +               +P      +     +     +  R+ W     S
Sbjct: 629 FRNVFEHILCFTKSTETEFQTDEVRITNPNEFKNWWVEYPERYNPRGMVPRNIWDF--MS 686

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
            S+    +     HP   P  L+SRI+  ++  GDI+ DPF GSG   A A+ L R  IG
Sbjct: 687 PSQGAFGQFDALDHPAPLPPGLVSRIVELASNKGDIVFDPFAGSGMVPATAEALNRVGIG 746

Query: 251 IEMKQDYID 259
           IE    + +
Sbjct: 747 IEPNAKFCE 755


>gi|306825918|ref|ZP_07459256.1| type III restriction-modification system methylation subunit
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304431850|gb|EFM34828.1| type III restriction-modification system methylation subunit
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 641

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 78/345 (22%), Positives = 120/345 (34%), Gaps = 92/345 (26%)

Query: 15  SIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPP-------------YN-------- 50
            I +  + IIKGN++  L  L       V LI+ DPP             YN        
Sbjct: 175 EIQDTDNLIIKGNNLLALYSLKERFAGKVKLIYIDPPYYFLKTKPTDTFTYNSNFSLSSW 234

Query: 51  -------LQLNGQLYRPDHSLVDAVTDS---WDKFSSFEAY--DAFTRAWLLACRRVLKP 98
                  L +  QL   D  L  +++D    + K    E +  + F        R  +  
Sbjct: 235 LTFLKNRLSIAYQLLSYDGLLFLSMSDEGTHYLKVMMDEIFGIENFIADVTWEARSSVSS 294

Query: 99  NGTL--------------------------------WVIGSYHNIFRIG-----TMLQNL 121
           +G                                  +        +R+       + +NL
Sbjct: 295 DGLFSMNSNHILVYAKNKDAIDKNDFRLALDIETFKYDDNDGRGPYRLEPFDAPNIRKNL 354

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLI------WASPSPKAKGYTFNYDALKAAN 175
            + I N        P      R  +  +E  +      +             Y  +K A 
Sbjct: 355 QYEITNPNTRDIYIPPKGRCWRTTKENYERWLADNRIRFGVNGTSKPQLKAYYSEVKMAG 414

Query: 176 EDVQMRSDWLIPICSGSERLRNKD-----------GEKLHPTQKPEALLSRILVSSTKPG 224
           +     S W I   S + R  N +           GE++    KPE L+ R+L  ST  G
Sbjct: 415 KGKASSSIWTIQPNSITWRETNTNTSATKHQQELFGEEVFTNPKPEELIKRVLELSTNEG 474

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRIASV 268
           D++LD F GSGT+ AVA K+ R +IGIE + DYI+ +A +R+  V
Sbjct: 475 DLVLDFFMGSGTTAAVAHKMNRQYIGIE-QMDYIETVAVERLKKV 518


>gi|313143493|ref|ZP_07805686.1| modification methylase BslI [Helicobacter cinaedi CCUG 18818]
 gi|313128524|gb|EFR46141.1| modification methylase BslI [Helicobacter cinaedi CCUG 18818]
          Length = 399

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 59/312 (18%), Positives = 97/312 (31%), Gaps = 96/312 (30%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KI+ G+ +  L+++ ++SV  +   PPY    N + Y               ++S   AY
Sbjct: 84  KILWGDCLQGLKQMKSESVGAMVTSPPY---YNARAYA--------------QWSDLNAY 126

Query: 82  DAFTRAWLLACRRVLKPNGTL-WVIGSYHNI-----------------FRIGTMLQNLNF 123
            +   A L  C RVL  +    + +G   +                       + + + F
Sbjct: 127 MSDMEAILRECYRVLDNHRVFVFNVGDIFDNDNLFTRSTWGKRRLPLGAYFILLFEKVGF 186

Query: 124 WILNDIVWRKSN---------PMPNFRGRRFQNAHETLIWASPS---------------- 158
             ++DI+W K             P    +   N +E ++                     
Sbjct: 187 SFVDDIIWDKGQVQSQRHKNGDKPYPYYQYPMNCYEHILIFHKHRSDETRYPCPVCGCLQ 246

Query: 159 --------------------------------PKAKGYTFNYDALKAANE---DVQMRSD 183
                                             AK Y    +A    NE   D      
Sbjct: 247 VNGNAYTEKGLRSWECKNLDCFERSKANRGKRFSAKTYFTQNEAFNRGNEIDKDFIYAWR 306

Query: 184 WLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
             I   +   ++ +K    L H    P+ +    +   +  G+ +LDPF G GTS  VA 
Sbjct: 307 RDIKAINPVIKINSKGQNTLGHTAPFPKEIPEFAIKMFSYKGERVLDPFMGLGTSVKVAD 366

Query: 243 KLRRSFIGIEMK 254
           KL R  IGIE  
Sbjct: 367 KLGRIGIGIERD 378


>gi|297380018|gb|ADI34905.1| Modification methylase [Helicobacter pylori v225d]
          Length = 359

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 67/148 (45%), Gaps = 6/148 (4%)

Query: 127 NDIVWRKSNPMPNFRGRRFQN-AHETLIWASP-----SPKAKGYTFNYDALKAANEDVQM 180
           ND      N       ++ +N   E + W         P    Y       K   +   +
Sbjct: 98  NDFYPIAPNGEDGCWRKKPENLDSEHIFWQENSKGRLIPYEVIYYDEIKNAKKVIKTRTI 157

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
            +++     +  E L   +G KL  T KPEALL RI+  ST+  D++LD F GSGT+ AV
Sbjct: 158 FTEYGTTTEATKEILALFNGTKLFDTPKPEALLKRIIEISTQENDLVLDFFAGSGTTCAV 217

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASV 268
           A K +R +IGIEM + +  +   R+  V
Sbjct: 218 AHKFKRKYIGIEMGEHFDSVILPRLKKV 245


>gi|320089235|emb|CBY98988.1| K07319 putative adenine-specific DNA-methyltransferase [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
          Length = 145

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 38/160 (23%)

Query: 116 TMLQNLNFWILNDIVWRKSNPM-PNFRGRRFQNAH-----ETLIWASPSPKAKGYTFNYD 169
              +N  F ++  +V+ K+      + G R + A+        +  +P P   G+ +   
Sbjct: 2   AAWKNAGFSVVGHLVFTKTYTSKAAYVGYRHECAYILAKGRPRLPQNPLPDVLGWKY--- 58

Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
                                         G + HPT+KP   L  ++ S T PG I+LD
Sbjct: 59  -----------------------------SGNRHHPTEKPVTSLQPLIESFTHPGAIVLD 89

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           PF GSG++   A +  R +IGIE+ + Y     +R+A+V+
Sbjct: 90  PFAGSGSTCVAALQAGRRYIGIELLERYHRAGQQRLAAVR 129


>gi|153869323|ref|ZP_01998963.1| DNA methylase N-4/N-6 [Beggiatoa sp. PS]
 gi|152074153|gb|EDN71039.1| DNA methylase N-4/N-6 [Beggiatoa sp. PS]
          Length = 194

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 81/187 (43%), Gaps = 24/187 (12%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G++I + + +   S+DLI ADPPYNL  +                +     +F+ Y  F+
Sbjct: 23  GDAIDLFQDIKDDSIDLIIADPPYNLGKDY--------------GNNHDLKAFDDYINFS 68

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML-QNLNFWILNDIVWRKSNPMPNFRGRR 144
           + WL   +RVLKP GT++V      I  +  ++ + LN    + I W  +  M    G  
Sbjct: 69  KKWLSQAKRVLKPTGTIYVFMGVKFISYLYNIMDRELNLCFNSWICWHYTQGMGKTMG-- 126

Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL----IPICSGSERLRNKDG 200
           F   H+ ++  +     K Y FN DA++   +  + +++        +   S      + 
Sbjct: 127 FSPRHDDILMFNK---TKTYVFNLDAIRIPQKYYRAKNNMRGANPGDVWEFSHIHYCHEN 183

Query: 201 EKLHPTQ 207
            + HPT+
Sbjct: 184 RQNHPTK 190


>gi|207723082|ref|YP_002253489.1| dna methylase protein [Ralstonia solanacearum IPO1609]
 gi|206588274|emb|CAQ18974.1| putative dna methylase protein [Ralstonia solanacearum IPO1609]
          Length = 268

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 94/249 (37%), Gaps = 29/249 (11%)

Query: 5   NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL 64
             LA+++   S+ +  ++  K + + +L K P ++V  +F DP Y   ++   Y  + + 
Sbjct: 46  QDLALDKLPKSLKKLANQKTKMDGLKLLSKFPTETVPAVFFDPQYRGVMDKLDYGNEGAR 105

Query: 65  VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
                    + +  +  D   R +++   RVL P+G L +     ++             
Sbjct: 106 QKG------RAALSQMSDETIRNFVVEIDRVLCPSGHLLLWVDKFHLVEGIDAWTEGTSL 159

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
              D+V      +      R ++ +  ++   P      +T              +   W
Sbjct: 160 ETVDLVTWDKGRIGMGYRTRRKSEYLIILQKLPKKAKGHWT-----------SHDIPDVW 208

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           L            +   + HP  KPE L S I+ +  KPGD ++DP  G  +    A   
Sbjct: 209 L------------EKVGRHHPHAKPEQLQSAIINAIVKPGDFVVDPASGGFSVMRSAINA 256

Query: 245 RRSFIGIEM 253
            R+FIG ++
Sbjct: 257 GRNFIGCDL 265


>gi|260867515|ref|YP_003233917.1| putative DNA methylase [Escherichia coli O111:H- str. 11128]
 gi|257763871|dbj|BAI35366.1| putative DNA methylase [Escherichia coli O111:H- str. 11128]
 gi|323178009|gb|EFZ63591.1| DNA methylase family protein [Escherichia coli 1180]
          Length = 352

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 60/156 (38%), Gaps = 19/156 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  +  LP  SVDLI  DPPY                    + WD +++  E 
Sbjct: 11  ELINADCLEFMRSLPENSVDLIVTDPPYF---------------KVKPEGWDNQWAGDED 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +        M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDTEIMMRE-RFNVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
             +    A+           A+ Y   Y    A  E
Sbjct: 115 CNKESLRAYFPA--TERILFAEHYQGPYRPKDAGYE 148



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 41/83 (49%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +K   +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTYKPVQYYPGKHPCEKTAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R   G+E++ +  +   + +  +
Sbjct: 325 RRATGVELETERFEQTVREVQDL 347


>gi|284097712|ref|ZP_06385726.1| DNA methylase N-4/N-6 domain protein [Candidatus Poribacteria sp.
           WGA-A3]
 gi|283830777|gb|EFC34873.1| DNA methylase N-4/N-6 domain protein [Candidatus Poribacteria sp.
           WGA-A3]
          Length = 124

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 48/98 (48%)

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
           ++V    D  +   +    L  + G + H    P+AL    +   TK  D +LDPF GSG
Sbjct: 21  KNVSNWLDRKMAYPTNVLHLATETGNRKHSAVFPKALPEWFIKLFTKENDWVLDPFAGSG 80

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           T+  VA+ L R+ +GIE+  DY  +A + I     L N
Sbjct: 81  TTCQVAQTLMRNSVGIEILPDYYKLAQENIKPTPHLEN 118


>gi|224437021|ref|ZP_03658002.1| modification methylase BslI [Helicobacter cinaedi CCUG 18818]
          Length = 409

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 59/312 (18%), Positives = 97/312 (31%), Gaps = 96/312 (30%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KI+ G+ +  L+++ ++SV  +   PPY    N + Y               ++S   AY
Sbjct: 94  KILWGDCLQGLKQMKSESVGAMVTSPPY---YNARAYA--------------QWSDLNAY 136

Query: 82  DAFTRAWLLACRRVLKPNGTL-WVIGSYHNI-----------------FRIGTMLQNLNF 123
            +   A L  C RVL  +    + +G   +                       + + + F
Sbjct: 137 MSDMEAILRECYRVLDNHRVFVFNVGDIFDNDNLFTRSTWGKRRLPLGAYFILLFEKVGF 196

Query: 124 WILNDIVWRKSN---------PMPNFRGRRFQNAHETLIWASPS---------------- 158
             ++DI+W K             P    +   N +E ++                     
Sbjct: 197 SFVDDIIWDKGQVQSQRHKNGDKPYPYYQYPMNCYEHILIFHKHRSDETRYPCPVCGCLQ 256

Query: 159 --------------------------------PKAKGYTFNYDALKAANE---DVQMRSD 183
                                             AK Y    +A    NE   D      
Sbjct: 257 VNGNAYTEKGLRSWECKNLDCFERSKANRGKRFSAKTYFTQNEAFNRGNEIDKDFIYAWR 316

Query: 184 WLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
             I   +   ++ +K    L H    P+ +    +   +  G+ +LDPF G GTS  VA 
Sbjct: 317 RDIKAINPVIKINSKGQNTLGHTAPFPKEIPEFAIKMFSYKGERVLDPFMGLGTSVKVAD 376

Query: 243 KLRRSFIGIEMK 254
           KL R  IGIE  
Sbjct: 377 KLGRIGIGIERD 388


>gi|15801505|ref|NP_287522.1| putative DNA adenine methyltransferase encoded by prophage CP-933O
           [Escherichia coli O157:H7 EDL933]
 gi|15831034|ref|NP_309807.1| DNA methylase [Escherichia coli O157:H7 str. Sakai]
 gi|195939953|ref|ZP_03085335.1| putative DNA methylase [Escherichia coli O157:H7 str. EC4024]
 gi|208810880|ref|ZP_03252713.1| DNA methylase [Escherichia coli O157:H7 str. EC4206]
 gi|208816213|ref|ZP_03257392.1| DNA methylase [Escherichia coli O157:H7 str. EC4045]
 gi|208818296|ref|ZP_03258616.1| DNA methylase [Escherichia coli O157:H7 str. EC4042]
 gi|209399852|ref|YP_002270209.1| DNA methylase [Escherichia coli O157:H7 str. EC4115]
 gi|254792748|ref|YP_003077585.1| putative DNA adenine methyltransferase encoded by prophage CP-933O
           [Escherichia coli O157:H7 str. TW14359]
 gi|261226550|ref|ZP_05940831.1| putative DNA adenine methyltransferase encoded by prophage CP-933O
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261254841|ref|ZP_05947374.1| putative DNA adenine methyltransferase encoded by prophage CP-933O
           [Escherichia coli O157:H7 str. FRIK966]
 gi|12515007|gb|AAG56134.1|AE005344_10 putative DNA adenine methyltransferase encoded by prophage CP-933O
           [Escherichia coli O157:H7 str. EDL933]
 gi|13361245|dbj|BAB35203.1| putative DNA methylase [Escherichia coli O157:H7 str. Sakai]
 gi|208724386|gb|EDZ74094.1| DNA methylase [Escherichia coli O157:H7 str. EC4206]
 gi|208732861|gb|EDZ81549.1| DNA methylase [Escherichia coli O157:H7 str. EC4045]
 gi|208738419|gb|EDZ86101.1| DNA methylase [Escherichia coli O157:H7 str. EC4042]
 gi|209161252|gb|ACI38685.1| DNA methylase [Escherichia coli O157:H7 str. EC4115]
 gi|254592148|gb|ACT71509.1| putative DNA adenine methyltransferase encoded by prophage CP-933O
           [Escherichia coli O157:H7 str. TW14359]
 gi|320189851|gb|EFW64504.1| putative DNA methylase [Escherichia coli O157:H7 str. EC1212]
 gi|326344501|gb|EGD68252.1| putative DNA methylase [Escherichia coli O157:H7 str. 1044]
          Length = 352

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 60/156 (38%), Gaps = 19/156 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  +  LP  SVDLI  DPPY                    + WD +++  E 
Sbjct: 11  ELINADCLEFMRSLPENSVDLIVTDPPYF---------------KVKPEGWDNQWAGDED 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +        M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDTEIMMRE-RFNVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
             +    A+           A+ Y   Y    A  E
Sbjct: 115 CNKESLRAYFPA--TERILFAEHYQGPYRPKDAGYE 148



 Score = 76.9 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTYKPVQYYPGKHPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R   G+E++ +  +   + +  +
Sbjct: 325 RRATGVELETERFEQTVREVQDL 347


>gi|302188328|ref|ZP_07265001.1| putative site-specific DNA methyltransferase [Pseudomonas syringae
           pv. syringae 642]
          Length = 432

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 64/171 (37%), Gaps = 34/171 (19%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY----------------------- 58
           ++  G+ + V+  LPA SVD +  DPPY ++  G+ +                       
Sbjct: 4   ELHLGDCLEVMRSLPADSVDSVVTDPPYGIRFMGKSWDGKDIEDRATYRASMPSNDGACG 63

Query: 59  -RPDHSLVDAVTDSWD-KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
               H  V A    +D   +  +A+ AFT  W   C RVLKP G L    +      +  
Sbjct: 64  PNGGHRSVAAEAGKYDLTPAGMKAFQAFTLDWATECLRVLKPGGHLLSFAAARTYHHMAV 123

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQN---------AHETLIWASPS 158
            ++   F I + I+W   +  P     + ++         AHE +  A   
Sbjct: 124 GIEMAGFEIRDQIMWVFGSGFPKSHNLKGEHVGWGTALKPAHEPICMARKP 174



 Score = 81.2 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/66 (43%), Positives = 36/66 (54%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPT KP  L++ +L   T  G   LDPF GSG++G  A      FIGIE    Y+ IA  
Sbjct: 345 HPTVKPTDLMAYLLRLVTPTGGKTLDPFMGSGSTGKAAVFEGFDFIGIEQDVAYMAIANA 404

Query: 264 RIASVQ 269
           RIA  +
Sbjct: 405 RIAHAR 410


>gi|207110618|ref|ZP_03244780.1| DNA methylase [Helicobacter pylori HPKX_438_CA4C1]
          Length = 71

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 41/68 (60%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
              PE L+ R L   +   DI+LDPF G+GT+  VAK+L R FIGI++ + Y ++A +R+
Sbjct: 1   AMFPEELVKRCLKLFSYQNDIVLDPFNGAGTTTKVAKQLGRRFIGIDISEKYCEVAKERL 60

Query: 266 ASVQPLGN 273
                L N
Sbjct: 61  KETTNLFN 68


>gi|226324846|ref|ZP_03800364.1| hypothetical protein COPCOM_02633 [Coprococcus comes ATCC 27758]
 gi|225207294|gb|EEG89648.1| hypothetical protein COPCOM_02633 [Coprococcus comes ATCC 27758]
          Length = 143

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 16/140 (11%)

Query: 147 NAHETL-IWASPSPKAKGYTFNYDA-------LKAANEDVQMRSDWLIPICSGSERLRNK 198
            AHE + I+    P          +        + + +D    +++ +     +ER    
Sbjct: 4   RAHEDICIFYKKLPTYNPQKTTGHSRKVTKAEHRKSCKDSPDYNEFGLTSYDSTERYPRS 63

Query: 199 --------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
                       +HPTQKP ALL  ++ + T   D +LD   GSG++G       R FIG
Sbjct: 64  VLRFPKDIQKSAVHPTQKPVALLEYLIKTYTNEADTVLDNCMGSGSTGVACVNTERKFIG 123

Query: 251 IEMKQDYIDIATKRIASVQP 270
            E+   + +IA +RI + + 
Sbjct: 124 FELDLHFYEIAQERIMTTKK 143


>gi|76810832|ref|YP_333073.1| DNA methylase [Burkholderia pseudomallei 1710b]
 gi|254260324|ref|ZP_04951378.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei
           1710a]
 gi|76580285|gb|ABA49760.1| DNA methylase [Burkholderia pseudomallei 1710b]
 gi|254219013|gb|EET08397.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei
           1710a]
          Length = 378

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 9/89 (10%)

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
             RS W IP  S          +  H    PEAL+   +++ ++PGD++ DPFFGSGT+G
Sbjct: 291 NRRSVWTIPTQSF---------DGAHFATFPEALVEPCVLAGSRPGDVVFDPFFGSGTTG 341

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            VA++L R FIG E+   Y  +   R+  
Sbjct: 342 QVAQRLGRRFIGCELNPAYEPLQRDRLRQ 370



 Score = 72.7 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 66/204 (32%), Gaps = 54/204 (26%)

Query: 17  FEWKDKIIKGNSISVLEKL-PAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
             W D+  +G+   ++  +      V  I   PPY      + Y P              
Sbjct: 1   MNWLDQSHRGDCRDLMRAMIADGVRVQTIVTSPPY---WGLRSYLPGGHPDKG--REIGS 55

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLW-VIGSYH------------------------ 109
            ++   +          CR++L  +GTLW  +G  +                        
Sbjct: 56  EATLREFIDTLVGVFELCRQLLMDDGTLWLNMGDAYASSGGQTPMRGETFAGRARAKENI 115

Query: 110 -------------------NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
                                +R+   LQ+  +++  DI+W K NPMP     R   AHE
Sbjct: 116 CLSNRKAGIDGLKVKDLMGQPWRLAFALQDAGWYLRQDIIWHKPNPMPESVRDRCTKAHE 175

Query: 151 TLIWASPSPKAKGYTFNYDALKAA 174
            L   S    ++ Y +++ A++  
Sbjct: 176 YLFLLSK---SERYYYDFHAMQEP 196


>gi|269122884|ref|YP_003305461.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Streptobacillus moniliformis DSM 12112]
 gi|268314210|gb|ACZ00584.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Streptobacillus moniliformis DSM 12112]
          Length = 369

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 61/318 (19%), Positives = 102/318 (32%), Gaps = 77/318 (24%)

Query: 24  IKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS---WDKFSS 77
           I  ++   +  L      SVDL++ DPP+N   +        S + +  +    +    +
Sbjct: 38  INADNFDAMIMLLDNFENSVDLVYIDPPFNTNSDFYYNEDKTSTISSSKNDSLAYSDKMN 97

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--ILNDIVWRKSN 135
              Y  F R  L+  +++L   GT++          I  +L  +      +NDI   KSN
Sbjct: 98  LNEYLEFIRKRLILIKKLLSDRGTIYFHIDCKVGPYIKLILDEIFGIKNFVNDISRVKSN 157

Query: 136 PMPNFRG-------------RRFQN----------AHETLIWASPSPKAKGYTFNYDALK 172
           P    R              ++ QN          + E ++   P     G  +N     
Sbjct: 158 PKNFKRKAFGNEKDVIYIYSKKNQNNIFNNVTIALSEEEILKKFPKIDKNGRRYNTVPCH 217

Query: 173 AA----NEDVQMRSDWLIPICSGSERLRNKDGEKL------------------------- 203
           A     N +   +   + P      R   K+ EKL                         
Sbjct: 218 APGETKNGETGGKWKGVFPPKGRHWRYSPKELEKLDENGLIEWSKNGVPRIKNFSDEHKG 277

Query: 204 -----------------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                            +PT+K   +LS I   S+    II+D F GS +        +R
Sbjct: 278 KKIQDIWSNFKDPQNPIYPTEKNLDMLSMIAQQSSNEDSIIMDCFCGSSSFLLAGINKKR 337

Query: 247 SFIGIEMKQDYIDIATKR 264
             IGI+      ++  KR
Sbjct: 338 YVIGIDKSDVSKEVLLKR 355


>gi|118576338|ref|YP_876081.1| DNA modification methylase [Cenarchaeum symbiosum A]
 gi|118194859|gb|ABK77777.1| DNA modification methylase [Cenarchaeum symbiosum A]
          Length = 236

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/239 (21%), Positives = 93/239 (38%), Gaps = 32/239 (13%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           I   +++ + G  +++L+++P  SV   F DP Y   L+   Y  +      +    ++ 
Sbjct: 28  IMNRRNR-MNG--LTLLDRMPDCSVQAAFFDPQYRGILDRMKYGNEGVSRGRLRSGMEQM 84

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS-YHNIFRIGTMLQNLNFWILNDIVWRKS 134
           S+        R +L    RVL P+GTL++    +H +  I   ++      ++ I W K 
Sbjct: 85  SA-----DTVREFLGEMGRVLVPSGTLFLWIDKFHLVDGISGWIEGTCLNAVDMITWDKQ 139

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
                +R RR  + H  ++  SP      +            D  +   W          
Sbjct: 140 RMGMGYRTRRC-SEHMVVLQKSPKRAKNVW-----------RDHGIPDVW---------- 177

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
              K   + H   KP  L +R++   T     +LDP  G  +     K+  R+FIG ++
Sbjct: 178 -PEKVEGRNHTHAKPVRLQARLIECVTTGRGAVLDPAAGGYSVLESCKRTGRNFIGCDL 235


>gi|260868444|ref|YP_003234846.1| putative DNA methylase [Escherichia coli O111:H- str. 11128]
 gi|257764800|dbj|BAI36295.1| putative DNA methylase [Escherichia coli O111:H- str. 11128]
          Length = 352

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 61/156 (39%), Gaps = 19/156 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  +  LP  SVDLI  DPPY                    + WD +++  E 
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPYF---------------KVKPEGWDNQWTGDED 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
             +    A+           A+ Y   Y    A  E
Sbjct: 115 CNKESLRAYFPA--TERILFAEHYQGPYRPKDAGYE 148



 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTHKPVQYYPGKHPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAALALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R   G+E++ +  +   + +  +
Sbjct: 325 RRATGVELETERFEQTVREVQDL 347


>gi|209550029|ref|YP_002281946.1| DNA methylase N-4/N-6 [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535785|gb|ACI55720.1| DNA methylase N-4/N-6 domain protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 379

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 103/289 (35%), Gaps = 66/289 (22%)

Query: 37  AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
             S D  F D P+     G +Y P HS    +  S D+ S  E+               +
Sbjct: 105 DGSDDRTFRDKPF--STVGPVYDPKHSKARGLFVSGDRQSHVES------------GGRV 150

Query: 97  KPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
              G +          R+   LQ+  +W+ ++I+W K+NP P     R    HE +   +
Sbjct: 151 VAGGYMKPKDVCMIPNRLAIALQDDGWWVRSEIIWNKTNPKPESIDDRPAAVHEKIWLLT 210

Query: 157 PSPKAKGYTFNYDALKAA--NEDVQMRSDWLIPICSGSERLRNKDG-------------- 200
               ++ Y F+ D+LK          R D       GS   +N++G              
Sbjct: 211 K---SERYFFDADSLKEPTTGNAHARRKDGQYKAAKGSTAGQNREGTWVETYVPDLRNGR 267

Query: 201 ----------EKLHPTQKPEALLSRILVSSTKP----------------------GDIIL 228
                        H    P  L  R +++ T                          I+L
Sbjct: 268 NVWTFNIEGYRGAHFATFPRELARRCILAGTPKTVCGCCGAAEGCGPICDTFERLPGIVL 327

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
           DPF GSGT   VA++       IE+K +Y DIA +RIA   P+ +IE  
Sbjct: 328 DPFGGSGTVAVVAEQYSYRSALIELKPEYADIAERRIAGA-PVVSIENE 375



 Score = 70.0 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 11/89 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I  G+ I V+  +PA S+D +   PPY    +             V        +   +
Sbjct: 13  RIHVGDCIEVMRSMPANSIDCVVTSPPYWGLRDY-----------GVAGQIGLERTLGEH 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
                +     RR+LK +GT+WV      
Sbjct: 62  LEVMVSVFREIRRILKAHGTVWVNYGDCY 90


>gi|322513973|ref|ZP_08067048.1| modification methylase EcaI [Actinobacillus ureae ATCC 25976]
 gi|322120199|gb|EFX92157.1| modification methylase EcaI [Actinobacillus ureae ATCC 25976]
          Length = 375

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/318 (16%), Positives = 104/318 (32%), Gaps = 70/318 (22%)

Query: 20  KDKIIKGNSISVLEKLPAK----SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS---- 71
           ++K+  G+++  ++ L        ++LI+ DPPY    N +     H+  D +  +    
Sbjct: 10  QNKLFFGDNLDSMQYLLNNGYSGKINLIYIDPPYATSHNFKNKDQQHAYSDTLEGAEFVE 69

Query: 72  ----------------------------------WDKFSSFEAYDAF-------TRAWLL 90
                                              D+    +   AF       T+ +  
Sbjct: 70  FLRERLILMRELLASNGSIYLHLDSNMAFTMKLIMDEIFGEKNCRAFITRKKCSTKNYTR 129

Query: 91  ACRRVLKPNGTLWVIGS---YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
                +      +       +H  F    + + +  +   D   R+   +P         
Sbjct: 130 NTFGNISDYIMFYTKSDKYTWHRPFEPWELEKMIEQYPYIDKQGRRYKKVPIHAPGERNG 189

Query: 148 AHETLIWASPSPKAKGYTF--------------NYDALKAANEDVQMRSDWLIPICSGSE 193
           A          PK K + +               + +       V    D  IPI     
Sbjct: 190 ATGQAWRGKLPPKGKHWQYTPDKLDELDSAGEIYWSSTGNPRRMVFCNPDQGIPIQDIWL 249

Query: 194 RLRNKDGEK----LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
             R+   +      +PT+K   +L  I+ SS+ P D+++D F GSGT+   A +L R++I
Sbjct: 250 NYRDSINQAQKTTGYPTEKNFDMLKLIIASSSNPNDLVMDCFSGSGTTLGAAFELNRNWI 309

Query: 250 GIEMKQDYIDIATKRIAS 267
           G++   + I    KR  +
Sbjct: 310 GMDNSLESIKAIFKRFRN 327


>gi|168751107|ref|ZP_02776129.1| DNA methylase [Escherichia coli O157:H7 str. EC4113]
 gi|168783722|ref|ZP_02808729.1| DNA methylase [Escherichia coli O157:H7 str. EC4076]
 gi|195939154|ref|ZP_03084536.1| putative DNA methylase [Escherichia coli O157:H7 str. EC4024]
 gi|208811074|ref|ZP_03252907.1| DNA methylase [Escherichia coli O157:H7 str. EC4206]
 gi|208815815|ref|ZP_03256994.1| DNA methylase [Escherichia coli O157:H7 str. EC4045]
 gi|208820893|ref|ZP_03261213.1| DNA methylase [Escherichia coli O157:H7 str. EC4042]
 gi|209396181|ref|YP_002271441.1| DNA methylase [Escherichia coli O157:H7 str. EC4115]
 gi|209397302|ref|YP_002270274.1| DNA methylase [Escherichia coli O157:H7 str. EC4115]
 gi|254792813|ref|YP_003077650.1| DNA methylase [Escherichia coli O157:H7 str. TW14359]
 gi|188014746|gb|EDU52868.1| DNA methylase [Escherichia coli O157:H7 str. EC4113]
 gi|188998945|gb|EDU67931.1| DNA methylase [Escherichia coli O157:H7 str. EC4076]
 gi|208724580|gb|EDZ74288.1| DNA methylase [Escherichia coli O157:H7 str. EC4206]
 gi|208732463|gb|EDZ81151.1| DNA methylase [Escherichia coli O157:H7 str. EC4045]
 gi|208741016|gb|EDZ88698.1| DNA methylase [Escherichia coli O157:H7 str. EC4042]
 gi|209157581|gb|ACI35014.1| DNA methylase [Escherichia coli O157:H7 str. EC4115]
 gi|209158702|gb|ACI36135.1| DNA methylase [Escherichia coli O157:H7 str. EC4115]
 gi|254592213|gb|ACT71574.1| DNA methylase [Escherichia coli O157:H7 str. TW14359]
          Length = 352

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 61/156 (39%), Gaps = 19/156 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  +  LP  SVDLI  DPPY                    + WD +++  E 
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPYF---------------KVKPEGWDNQWTGDED 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
             +    A+           A+ Y   Y    A  E
Sbjct: 115 CNKESLRAYFPA--TERILFAEHYQGPYRPKDAGYE 148



 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTHKPVQYYPGKHPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R   G+E++ +  +   + +  +
Sbjct: 325 RRATGVELETERFEQTVREVQDL 347


>gi|22001112|gb|AAM88315.1|AF479829_4 unknown [Escherichia coli]
          Length = 352

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 62/156 (39%), Gaps = 19/156 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  ++ LP  SVDLI  DPPY                    + WD +++  E 
Sbjct: 11  ELINADCLEFIQTLPENSVDLIVTDPPYF---------------KVKPEGWDNQWTGDED 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
             +    A+           A+ Y   Y    A  E
Sbjct: 115 CNKESLRAYFPA--TERILFAEHYQGPYRPKDAGYE 148



 Score = 77.3 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTHKPVQYYPGKHPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R   G+E++ +  +   + +  +
Sbjct: 325 RRATGVELETERFEQTVREVQGL 347


>gi|299138965|ref|ZP_07032142.1| DNA methylase N-4/N-6 domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298599119|gb|EFI55280.1| DNA methylase N-4/N-6 domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 197

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 66/192 (34%), Gaps = 17/192 (8%)

Query: 109 HNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR-GRRFQNAHETLIWASPSPKAKGYTFN 167
              F     + NL   +  +++W K          +     HE ++              
Sbjct: 5   QQPFTTTVAVSNLKQ-LKTELIWEKPQGTNFLNAKKYPMKVHENILVFCDQTPLYHPQMT 63

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNK-----------DGEKLHPTQKPEALLSRI 216
             A           S++     +G +   +                +HPTQKP +L   +
Sbjct: 64  TGATPYVTGAHYGSSNYRPMDYAGGKVNADGSRYPRSVLQFIPERGMHPTQKPVSLCEWL 123

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
           + + +  GD +LD   GSGT+   A    R  IGIE  Q Y DIA +R    +       
Sbjct: 124 IRTYSNAGDTVLDCCMGSGTTILAALNTDRKGIGIEQDQKYFDIAAQRCKETE----ANQ 179

Query: 277 TVLTGKRTEPRV 288
           T LT    EP +
Sbjct: 180 TTLTSIPHEPDI 191


>gi|119359933|dbj|BAF41976.1| cellulase [uncultured bacterium]
          Length = 375

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 78/278 (28%), Gaps = 78/278 (28%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K+ I++G+ I  L  LP   V      PPY    +             V        + E
Sbjct: 2   KNVILQGDVIEALRSLPDGFVHTCVTSPPYWGLRDY-----------GVEGQIGLEPTPE 50

Query: 80  AYDAFTRAWLLACRRVLKPNGTLW-VIGSYH----------------------------- 109
            Y           RRVL+ +GTLW  +G  +                             
Sbjct: 51  EYIEKMVEVFREVRRVLRDDGTLWLNLGDSYVGSGKGPSGKSAKVHATKDGRQTMNNRVV 110

Query: 110 -----------NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
                        +R+   LQ   +++ +DI+W K N MP     R   AHE +   S S
Sbjct: 111 PYGLKPKDLVGIPWRVALALQADGWYLRSDIIWHKPNAMPESVKDRPTKAHEYIFLLSKS 170

Query: 159 PKAKGY------------TFNYDALKAANEDVQMRSDWLIPI-----------CSGSERL 195
           P+                  N       N  +  + D   P                  +
Sbjct: 171 PRYYYDADAIREDAIYQEKRNGRVGAYQNRAIFHKGDGTTPTGVATRDLSKRNKRTVWSI 230

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
             K  +  H    P  L+   +++ +        P  G
Sbjct: 231 PTKPFKGAHFAVFPPDLIEPCILAGSPEKAC---PHCG 265



 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/44 (54%), Positives = 34/44 (77%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
             I+LDPFFGSGT+G VA+K  R ++GIE+  +YI+IA KR+ +
Sbjct: 330 RGIVLDPFFGSGTTGLVAQKHGRDWVGIELNPEYIEIAKKRLEA 373


>gi|77163949|ref|YP_342474.1| DNA methylase N-4/N-6 [Nitrosococcus oceani ATCC 19707]
 gi|76882263|gb|ABA56944.1| DNA methylase N-4/N-6 [Nitrosococcus oceani ATCC 19707]
          Length = 238

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/234 (22%), Positives = 91/234 (38%), Gaps = 29/234 (12%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+ IK + +  L +L   SV   F DP Y   ++   Y  + S    +     +      
Sbjct: 25  DRKIKMDGLKFLGRLVDNSVPAAFFDPQYRGVMDKLKYGNEGSRQQ-LRAQMKQMPEETI 83

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGS-YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           +D     ++    RVL P+G L++    +H      +         ++ I W K      
Sbjct: 84  FD-----FVSEIARVLCPSGHLFLWIDKFHLCEGTSSWFDGTPMKTVDLITWDKERIGMG 138

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           +R RR   A   L+      +AKG   N+       E  Q                  +D
Sbjct: 139 YRSRRK--AEYLLVAQKKPVRAKGVWTNHSIPDVYQEKFQ------------------RD 178

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
               HP  KP  L ++++ + T  GD+++DP  GS +  A A++  R F+G ++
Sbjct: 179 MSFAHP--KPIGLQAKLIDAVTNSGDVVIDPAAGSFSVLAAAQQTGRKFLGCDI 230


>gi|193215938|ref|YP_001997137.1| DNA methylase N-4/N-6 domain-containing protein [Chloroherpeton
           thalassium ATCC 35110]
 gi|193089415|gb|ACF14690.1| DNA methylase N-4/N-6 domain protein [Chloroherpeton thalassium
           ATCC 35110]
          Length = 328

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 1/122 (0%)

Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS-DWLIPICSGSERLRNKDGEKLHP 205
           N   T I  +      G+  +     AAN        D         +  +  +    HP
Sbjct: 197 NIENTRIPYAKGETKVGHNPHPKGRVAANIIRTEPFSDEYDKFFVIPKVRQKAEEFNDHP 256

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T KP  L+  ++   +     +LDPF GSG++G     L+R FIG E+ + Y +I  KRI
Sbjct: 257 TLKPVELMHHLVKLVSFENQTVLDPFMGSGSTGVACLTLKRKFIGYELDERYYEICKKRI 316

Query: 266 AS 267
            +
Sbjct: 317 DA 318



 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 43/120 (35%), Gaps = 22/120 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I   +    L +L   S+D +  DPPY +                  + WDK       
Sbjct: 7   EIYNKSCY-GLGELKDNSIDAMVTDPPYGISYQ--------------NNYWDK------- 44

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D   +       +VLKP     V  S   + R+   L++  F I + + W   N MP  R
Sbjct: 45  DLPDKKIWEDSVKVLKPGSFGLVFSSVRLMHRLMVALEDAGFLIKDVMFWSYLNGMPKSR 104


>gi|254436061|ref|ZP_05049568.1| DNA methylase [Nitrosococcus oceani AFC27]
 gi|207089172|gb|EDZ66444.1| DNA methylase [Nitrosococcus oceani AFC27]
          Length = 256

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/234 (22%), Positives = 91/234 (38%), Gaps = 29/234 (12%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+ IK + +  L +L   SV   F DP Y   ++   Y  + S    +     +      
Sbjct: 43  DRKIKMDGLKFLGRLVDNSVPAAFFDPQYRGVMDKLKYGNEGSRQQ-LRAQMKQMPEETI 101

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGS-YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           +D     ++    RVL P+G L++    +H      +         ++ I W K      
Sbjct: 102 FD-----FVSEIARVLCPSGHLFLWIDKFHLCEGTSSWFDGTPMKTVDLITWDKERIGMG 156

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           +R RR   A   L+      +AKG   N+       E  Q                  +D
Sbjct: 157 YRSRRK--AEYLLVAQKKPVRAKGVWTNHSIPDVYQEKFQ------------------RD 196

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
               HP  KP  L ++++ + T  GD+++DP  GS +  A A++  R F+G ++
Sbjct: 197 MSFAHP--KPIGLQAKLIDAVTNSGDVVIDPAAGSFSVLAAAQQTGRKFLGCDI 248


>gi|317014763|gb|ADU82199.1| adenine-specific DNA methylase [Helicobacter pylori Gambia94/24]
          Length = 356

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/148 (31%), Positives = 67/148 (45%), Gaps = 6/148 (4%)

Query: 127 NDIVWRKSNPMPNFRGRRFQN-AHETLIWASP-----SPKAKGYTFNYDALKAANEDVQM 180
           ND      N       ++ +N   E + W         P    Y       K   +   +
Sbjct: 95  NDFYPIAPNGEEGCWRKKPENLDSEHIFWQENSKGRLIPYEVIYYDEIKNAKKVIKTRTI 154

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
            +++     +  E L   +G KL  T KPEALL RIL  STK  D++ D F GSGT+ AV
Sbjct: 155 FTEYGTTTEATKEILALFNGTKLFDTPKPEALLQRILEISTKENDLVCDFFAGSGTTCAV 214

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASV 268
           A KL+R +IG+EM + +  +   R+  V
Sbjct: 215 AHKLKRKYIGVEMGEHFERVILPRLKKV 242


>gi|168803035|ref|ZP_02828042.1| DNA methylase [Escherichia coli O157:H7 str. EC508]
 gi|189375205|gb|EDU93621.1| DNA methylase [Escherichia coli O157:H7 str. EC508]
          Length = 352

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 61/156 (39%), Gaps = 19/156 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  +  LP  SVDLI  DPPY                    + WD +++  E 
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPYF---------------KVKPEGWDNQWTGDED 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
             +    A+           A+ Y   Y    A  E
Sbjct: 115 CNKESLRAYFPA--TERILFAEHYQGPYRPKDAGYE 148



 Score = 77.3 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTHKPVQYYPGKHPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R   G+E++ +  +   + +  +
Sbjct: 325 RRATGVELETERFEQTVREVQDL 347


>gi|154148655|ref|YP_001406623.1| modification methylase CcrMI (adenine-specificmethyltransferase
          CcrMI) (M.CcrMI) [Campylobacter hominis ATCC BAA-381]
 gi|153804664|gb|ABS51671.1| modification methylase CcrMI (Adenine-specificmethyltransferase
          CcrMI) (M.CcrMI) [Campylobacter hominis ATCC BAA-381]
          Length = 88

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 1/81 (1%)

Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSF 78
          K+ I++G+ + +L+ LP KS+DLIFADPPY ++++G L RP+        D  D  F + 
Sbjct: 3  KNTILQGDCLKILKTLPDKSIDLIFADPPYWMRVDGILKRPEGENFSGCDDKRDNNFLNN 62

Query: 79 EAYDAFTRAWLLACRRVLKPN 99
          + Y  FT  WL  C+ VLK N
Sbjct: 63 DDYSQFTEKWLNECKIVLKNN 83


>gi|300902573|ref|ZP_07120550.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 84-1]
 gi|301301981|ref|ZP_07208114.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 124-1]
 gi|300405386|gb|EFJ88924.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 84-1]
 gi|300842533|gb|EFK70293.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 124-1]
 gi|315253749|gb|EFU33717.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 85-1]
          Length = 349

 Score = 93.9 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 17/131 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  +  LP  SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPYF---------------KVKPEGWDNQWKGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRRASDIEIMMRE-RFSVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHET 151
             +    A+  
Sbjct: 115 CNKESLRAYFP 125



 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTYKPVQYYPGKHPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  IG+E++    +   + +  +
Sbjct: 325 RRAIGVELETGRFEQTVREVQDL 347


>gi|187730991|ref|YP_001879898.1| DNA methylase [Shigella boydii CDC 3083-94]
 gi|187427983|gb|ACD07257.1| DNA methylase [Shigella boydii CDC 3083-94]
          Length = 349

 Score = 93.9 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 60/156 (38%), Gaps = 19/156 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  +  LP  SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPYF---------------KVKPEGWDNQWKGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
             +    A+           A+ Y   Y    A  E
Sbjct: 115 CNKESLRAYFPA--TERILFAEHYQGPYRPKDAGYE 148



 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTHKPVQFYPGKHPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAALALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  IG+E++    +   + +  +
Sbjct: 325 RRAIGVELETGRFEQTVREVQDL 347


>gi|182682259|ref|YP_001830419.1| DNA methylase N-4/N-6 domain-containing protein [Xylella fastidiosa
           M23]
 gi|182632369|gb|ACB93145.1| DNA methylase N-4/N-6 domain protein [Xylella fastidiosa M23]
          Length = 158

 Score = 93.9 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 69/183 (37%), Gaps = 32/183 (17%)

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL-----NDIVWRKSNPMPNFRGRRFQ 146
             R+L+ +G ++    Y++ +R+   L      I+       I+  + N   NF    F 
Sbjct: 1   MMRLLRNDGAIF----YNHKWRVQAGLLQDRTDIVTGFPVRQIIIWQRNGGINFNSGYFL 56

Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
             +E +   +          N                W IP          ++ +  HP 
Sbjct: 57  PTYEVIYLIAKPDFKLKPKANAIGD-----------VWTIP----------QESKNPHPA 95

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
             P  L  R + S       +LDPF GSGT    A+ L   ++GIE    Y++++  R+ 
Sbjct: 96  PFPVELAQRCIESVGAEP--VLDPFMGSGTIAVAAEILGYDWVGIEKSPKYVEMSLDRLK 153

Query: 267 SVQ 269
           S++
Sbjct: 154 SLK 156


>gi|227888077|ref|ZP_04005882.1| DNA methylase [Escherichia coli 83972]
 gi|227834923|gb|EEJ45389.1| DNA methylase [Escherichia coli 83972]
 gi|307552955|gb|ADN45730.1| DNA methylase [Escherichia coli ABU 83972]
 gi|315290929|gb|EFU50294.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 153-1]
          Length = 352

 Score = 93.9 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 60/156 (38%), Gaps = 19/156 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  +  LP  SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPYF---------------KVKPEGWDNQWKGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
             +    A+           A+ Y   Y    A  E
Sbjct: 115 CNKESLRAYFPA--TERILFAEHYQGPYRPKDAGYE 148



 Score = 77.3 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTHKPVQYYPGKHPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R   G+E++ +  +   + +  +
Sbjct: 325 RRATGVELETERFEQTVREVQDL 347


>gi|163785231|ref|ZP_02179904.1| type II restriction-modification system methylation subunit
           [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879499|gb|EDP73330.1| type II restriction-modification system methylation subunit
           [Hydrogenivirga sp. 128-5-R1-1]
          Length = 306

 Score = 93.9 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 87/225 (38%), Gaps = 19/225 (8%)

Query: 111 IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET-------LIWASPSPKAKG 163
              I    +++ F  +  I+W+K   M    G     ++         + +       K 
Sbjct: 23  HAEIIAQCEDIGFDYMGSIIWQKKTTMNTTGGANVMGSYPYPPNGMVEIDYEHILIFKKP 82

Query: 164 YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKP 223
                   +   +    + +W             +  E  H    PE L  RI+   +  
Sbjct: 83  GKSKKIEKEVKEKSKLSKEEWKEYFSGHWNFAGARQIE--HQAMFPEELPKRIIKMFSFV 140

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI-----ASVQPLGNIELTV 278
           G+ +LDPF GSGT+  VA +L R+ +G E+ ++++D+  K+I      +++ +      V
Sbjct: 141 GETVLDPFLGSGTTAKVAVELGRNAVGYEVNENFLDVIIKKIDNNSNKNIEIIKRDFPIV 200

Query: 279 LTGKRTEPRV-AFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
               +  P++   N ++E   ++ G+    ++      +  DG L
Sbjct: 201 PEDIKYTPKIKNANPVIEPEKLKFGK----SKTYKVIDILKDGRL 241


>gi|168763633|ref|ZP_02788640.1| DNA methylase [Escherichia coli O157:H7 str. EC4501]
 gi|217329285|ref|ZP_03445365.1| DNA methylase [Escherichia coli O157:H7 str. TW14588]
 gi|189366278|gb|EDU84694.1| DNA methylase [Escherichia coli O157:H7 str. EC4501]
 gi|217317724|gb|EEC26152.1| DNA methylase [Escherichia coli O157:H7 str. TW14588]
          Length = 352

 Score = 93.5 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 60/156 (38%), Gaps = 19/156 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  +  LP  SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPYF---------------KVKPEGWDNQWKGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
             +    A+           A+ Y   Y    A  E
Sbjct: 115 CNKESLRAYFPA--TERILFAEHYQGPYRPKDAGYE 148



 Score = 77.3 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTHKPVQYYPGKHPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R   G+E++ +  +   + +  +
Sbjct: 325 RRATGVELETERFEQTVREVQDL 347


>gi|261227063|ref|ZP_05941344.1| DNA methylase [Escherichia coli O157:H7 str. FRIK2000]
          Length = 352

 Score = 93.5 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 60/156 (38%), Gaps = 19/156 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  +  LP  SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPYF---------------KVKPEGWDNQWKGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
             +    A+           A+ Y   Y    A  E
Sbjct: 115 CNKESLRAYFPA--TERILFAEHYQGPYRPKDAGYE 148



 Score = 77.3 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTHKPVQYYPGKHPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R   G+E++ +  +   + +  +
Sbjct: 325 RRATGVELETERFEQTVREVQDL 347


>gi|260867672|ref|YP_003234074.1| putative DNA methylase [Escherichia coli O111:H- str. 11128]
 gi|257764028|dbj|BAI35523.1| putative DNA methylase [Escherichia coli O111:H- str. 11128]
          Length = 352

 Score = 93.5 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 60/156 (38%), Gaps = 19/156 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  +  LP  SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPYF---------------KVKPEGWDNQWKGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
             +    A+           A+ Y   Y    A  E
Sbjct: 115 CNKESLRAYFPA--TERILFAEHYQGPYRPKDAGYE 148



 Score = 77.3 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTHKPVQYYPGKHPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R   G+E++ +  +   + +  +
Sbjct: 325 RRATGVELETERFEQTVREVQDL 347


>gi|323179216|gb|EFZ64786.1| DNA methylase family protein [Escherichia coli 1180]
          Length = 352

 Score = 93.5 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 60/156 (38%), Gaps = 19/156 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  +  LP  SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPYF---------------KVKPEGWDNQWKGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMREC-FSVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
             +    A+           A+ Y   Y    A  E
Sbjct: 115 CNKESLRAYFPA--TERILFAEHYQGPYRPKDAGYE 148



 Score = 77.3 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTHKPVQYYPGKHPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R   G+E++ +  +   + +  +
Sbjct: 325 RRATGVELETERFEQTVREVQDL 347


>gi|301307372|ref|ZP_07213377.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 124-1]
 gi|300837456|gb|EFK65216.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 124-1]
 gi|315253198|gb|EFU33166.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 85-1]
          Length = 182

 Score = 93.5 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 64/168 (38%), Gaps = 21/168 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P   +D I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNGIDFILTDPPYLVGFRD---RQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
            G R + A+        +   P P   G+ ++ +            SD
Sbjct: 108 VGYRHECAYVLAKGRPALPQKPLPDVLGWKYSGNRHHPTERHCCKVSD 155


>gi|300115200|ref|YP_003761775.1| adenine-specific DNA-methyltransferase [Nitrosococcus watsonii
           C-113]
 gi|299541137|gb|ADJ29454.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nitrosococcus watsonii C-113]
          Length = 238

 Score = 93.5 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 52/234 (22%), Positives = 90/234 (38%), Gaps = 29/234 (12%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D+ IK + +  L +L   SV   F DP Y   ++   Y  + S    +     +      
Sbjct: 25  DQKIKMDGLKFLGRLVDNSVPAAFFDPQYRGVMDKLKYGNEGSRQQ-LRAQMKQMPEETI 83

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGS-YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           +D     ++    RVL P+G L++    +H      +         ++ I W K      
Sbjct: 84  FD-----FVSEIARVLCPSGHLFLWIDKFHLCEGTSSWFDGTPMKTVDLITWDKERIGMG 138

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           +R RR   A   L+      +AKG   N+       E  Q    +               
Sbjct: 139 YRSRRK--AEYLLVAQKKPVRAKGVWTNHSIPDVYQERFQRNMSF--------------- 181

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
               HP  KP  L ++++ + T  GD+++DP  GS +  A A++  R F+G ++
Sbjct: 182 ---AHP--KPIGLQAKLIDAVTNSGDVVIDPAAGSFSVLAAAQQTGRKFLGCDI 230


>gi|157414587|ref|YP_001481843.1| hypothetical protein C8J_0267 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157385551|gb|ABV51866.1| hypothetical protein C8J_0267 [Campylobacter jejuni subsp. jejuni
           81116]
          Length = 820

 Score = 93.5 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 52/316 (16%), Positives = 111/316 (35%), Gaps = 72/316 (22%)

Query: 1   MSQKNSLAINENQNSIFEWKD-KIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQ 56
           +S++N   +    +++ E  + +++K ++   L  L  K    +DLI+ DPP+N      
Sbjct: 355 LSEENYYKLLSAFDNLDEILNGELVKADNFQALNSLMPKYQGKIDLIYIDPPFNTG---- 410

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
                     +  D  DKF     + +     L   +  L   G  ++    +  +    
Sbjct: 411 ----------SDFDYKDKFQD-STWLSLMHNRLELAKEFLSDKGNFYLHLDENADYFGRI 459

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGR---------------------RFQNAHETLIW- 154
           +L      +    +   +N   +                         +  N+    +W 
Sbjct: 460 LLNEFFGEMECKKITFDTNATKDEEADLFGYKSFGNNFVLKSSTILFLKKTNSIFNKLWK 519

Query: 155 -----------------------ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
                                         + Y   +   K  +E + ++ + + P+   
Sbjct: 520 PNRNSSLLNLGQLDLIGISTIETPKKITDYEYYVQIWKNGKLCHEKIDIKDEKIYPLGDI 579

Query: 192 SERLRN--------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
              L +         +    + +QKPE +L RI+ SS+    +++D F GSGT+  V+ K
Sbjct: 580 WNDLYSFTQSEMRVSENISFYSSQKPENMLRRIIQSSSDENSVVMDFFVGSGTTLVVSHK 639

Query: 244 LRRSFIGIEMKQDYID 259
           L R ++G+EM + + +
Sbjct: 640 LNRKYLGVEMGEHFYE 655


>gi|218694475|ref|YP_002402142.1| putative DNA adenine methyltransferase ( DNA methylase) from phage
           origin [Escherichia coli 55989]
 gi|218351207|emb|CAU96911.1| putative DNA adenine methyltransferase ( DNA methylase) from phage
           origin [Escherichia coli 55989]
          Length = 349

 Score = 93.5 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 17/131 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  +  LP  SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPYF---------------KVKPEGWDNQWKGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHET 151
             +    A+  
Sbjct: 115 CNKESLRAYFP 125



 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTHKPVQFYPGKHPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAALALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  IG+E++    +   + +  +
Sbjct: 325 RRAIGVELETGRFEQTVREVQDL 347


>gi|2314540|gb|AAD08413.1| type III restriction enzyme M protein (mod) [Helicobacter pylori
           26695]
          Length = 288

 Score = 93.5 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 9/175 (5%)

Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWR---KSNPMPNFRGR-----RFQNAHETLI 153
           ++ +   +  +++  +                   S P   F        +    +  ++
Sbjct: 1   MYKLKDENGFYKLDPVWAKSGNNFSPYTFLNGKTWSPPSGTFWRYSIGTLKDMEQNNRIV 60

Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL 213
           +   +P AK Y  +  A    +      S+    +   +E  +  +G K+    KPEALL
Sbjct: 61  FNGKNPMAKRY-LSEVAEGRKSSTFWDGSEVGYNLNGDAEIKQLFNGNKVFNNPKPEALL 119

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            RIL  STK  D++LD F GSGT+ AVA K++R +IGIEM + +  +   R+  V
Sbjct: 120 QRILEISTKENDLVLDFFAGSGTTCAVAHKMKRKYIGIEMGEHFESVILPRLKKV 174


>gi|170770051|ref|ZP_02904504.1| DNA methylase [Escherichia albertii TW07627]
 gi|256023044|ref|ZP_05436909.1| putative DNA adenine methyltransferase ( DNA methylase) from phage
           origin [Escherichia sp. 4_1_40B]
 gi|170121117|gb|EDS90048.1| DNA methylase [Escherichia albertii TW07627]
 gi|284921102|emb|CBG34167.1| phage DNA adenine-methylase [Escherichia coli 042]
          Length = 349

 Score = 93.5 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 17/131 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  +  LP  SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPYF---------------KVKPEGWDNQWKGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHET 151
             +    A+  
Sbjct: 115 CNKESLRAYFP 125



 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTHKPVQFYPGKHPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAALALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  IG+E++    +   + +  +
Sbjct: 325 RRAIGVELETGRFEQTVREVQDL 347


>gi|323187745|gb|EFZ73046.1| DNA methylase family protein [Escherichia coli RN587/1]
          Length = 349

 Score = 93.5 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 60/156 (38%), Gaps = 19/156 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  +  LP  SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPYF---------------KVKPEGWDNQWKGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
             +    A+           A+ Y   Y    A  E
Sbjct: 115 CNKESLRAYFPA--TERILFAEHYQGPYRPKDAGYE 148



 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTYKPVQYYPGKHPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  IG+E++    +   + +  +
Sbjct: 325 RRAIGVELETGRFEQTVREVQDL 347


>gi|57234105|ref|YP_181827.1| type III restriction-modification system, methylase subunit
           [Dehalococcoides ethenogenes 195]
 gi|57224553|gb|AAW39610.1| type III restriction-modification system, methylase subunit
           [Dehalococcoides ethenogenes 195]
          Length = 587

 Score = 93.5 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 65/359 (18%), Positives = 121/359 (33%), Gaps = 99/359 (27%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQ---------------LNGQLYR--PDHS 63
           I+G+++ VL+ +       V LIF DPPYN                  + ++     D +
Sbjct: 107 IEGDNLEVLKLIQESYMGKVKLIFIDPPYNTGSDFIYADDFAVGSAEYSDEIGEVDADGN 166

Query: 64  LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN- 122
            +   TDS  +F S   + +   + L+  R +L  +G++++   ++ +  +  ++  +  
Sbjct: 167 RLFKNTDSNGRFHS--DWCSMMYSRLMLARNLLTDDGSIFISIDFNEVENLKKIMDEVFG 224

Query: 123 -FWILNDIVWRKSNPMPNF-RGRRFQNAHETLIWASPS----PKAKGYTFNYDALKAANE 176
                 +IVWR             F   H+T+++ S +       K Y  N D      +
Sbjct: 225 AENFQREIVWRIGWLSGYKTMAPNFIRNHDTILFYSKNSSKIEFIKKYIENKDFKPLLKK 284

Query: 177 D------------------------VQMRSDWLIPICSGSERLRNKD----------GEK 202
           D                                 PI          D          GEK
Sbjct: 285 DAKVTAKLKSLGLSDEQQKELLEFINHGNRPERYPIEDTWNSNEYDDLNSIAIVSFSGEK 344

Query: 203 L---------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RS 247
           +            QK   +L RI+ ++TK  DI++D F G+G++     ++       R 
Sbjct: 345 ISKILDVDQDFKGQKSVKMLMRIIEATTKEDDIVMDFFSGTGSTAHAVMQMNAEDGCHRK 404

Query: 248 FIG---------------------IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           +I                       E+ ++ I    +RI    PL +++      K  E
Sbjct: 405 YIMVQLPEPCEDGGAAKEAGYENICEIGKERIRRIGQRINESAPLFDLDTGFRVFKVAE 463


>gi|299067110|emb|CBJ38306.1| Putative Site-specific DNA-methyltransferase (adenine-specific)
           [Ralstonia solanacearum CMR15]
          Length = 294

 Score = 93.5 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 57/279 (20%), Positives = 93/279 (33%), Gaps = 45/279 (16%)

Query: 24  IKGNSISVLEKLPAKSVD-LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I G+ +  L  LP   V   IF  PP+                ++  D  +  +  E +D
Sbjct: 15  IHGDCVEALADLPDACVGYSIF-SPPFASLYTYS---------NSPRDMGNCRTDVEFFD 64

Query: 83  AFTRAWLLACRRVLKPNGTLWVIG-----SYHNIFRIGT---------MLQNLNFWILND 128
            F    +   RRV+KP   +         S      IG            Q   F   + 
Sbjct: 65  HFDYL-IAQLRRVMKPGRDVSFHCMDMPASKERDGYIGLKDFGGDLLRAFQRHGFIFHSK 123

Query: 129 IVWRK---------------SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
           +   K                  +        Q   + LI      + +  T +      
Sbjct: 124 VTIWKDPVTAMQRTKALGLLHKSVRENAAMCRQGIPDYLITIRAPGECERVTHDAKDYPV 183

Query: 174 ANEDVQMRSDW--LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
                     W  + P  +   R   +  ++ H       ++ R ++  T P DI+L PF
Sbjct: 184 DLWQKVASPVWMDINPSDTLQYRSAREHDDERHICPLQLEVIRRGVMLWTNPDDIVLSPF 243

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK--RIASV 268
            G G+ G V+ +L R F+G+E+K+ Y D A    R+AS 
Sbjct: 244 MGIGSEGVVSLELGRRFVGVELKKSYYDQAAANLRLASA 282


>gi|32456042|ref|NP_862209.1| DNA methyltransferase [Enterobacter sp. RFL1396]
 gi|27464468|gb|AAO16095.1| DNA methyltransferase [Enterobacter sp. RFL1396]
          Length = 332

 Score = 93.5 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 14/136 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I+  + ++VL+K+P+ S+ LI  DPPY+      +Y               +F   + Y 
Sbjct: 27  IVNHDCLTVLKKIPSNSISLILTDPPYHATQKKNIYGDT------------QFKKDDEYI 74

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            +     +  RR+LKPNG+L+         R+  ML    F ILN IVW K N  P F G
Sbjct: 75  NWMEEISIEWRRILKPNGSLYCFCDSSMSARLEVMLSK-RFNILNHIVWTKPN-QPGFDG 132

Query: 143 RRFQNAHETLIWASPS 158
            + +   E+L      
Sbjct: 133 WKGKMNKESLRQWYGH 148



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 58/147 (39%), Gaps = 9/147 (6%)

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
                   V             ++Q   + ++          Y  +       +++++  
Sbjct: 194 GKVNHGGAVSNWETGRNIPSREQYQKIKDAILNTKKVNSMPEYE-DAIRPFIISKNLEYT 252

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
             W             +  +  HP +KP+ +L+ I+++S+   DIILD F GSG++   A
Sbjct: 253 DVWNFESV--------RPYKGKHPAEKPQDMLNHIIMASSYESDIILDCFSGSGSTALSA 304

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASV 268
           K+ +R  I I++   + D   +R+  +
Sbjct: 305 KRNKRKCISIDIDTHWTDYTERRLNEL 331


>gi|323962523|gb|EGB58103.1| DNA methylase [Escherichia coli H489]
          Length = 349

 Score = 93.5 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 17/131 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  +  LP  SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPYF---------------KVKPEGWDNQWKGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHET 151
             +    A+  
Sbjct: 115 CNKESLRAYFP 125



 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTHKPVQFYPGKHPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAALALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  IG+E++    +   + +  +
Sbjct: 325 RRAIGVELETGRFEQTVREVQDL 347


>gi|288818917|ref|YP_003433265.1| adenine-specific DNA methylase [Hydrogenobacter thermophilus TK-6]
 gi|288788317|dbj|BAI70064.1| adenine-specific DNA methylase [Hydrogenobacter thermophilus TK-6]
 gi|308752504|gb|ADO45987.1| DNA methylase N-4/N-6 domain protein [Hydrogenobacter thermophilus
           TK-6]
          Length = 824

 Score = 93.5 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 56/303 (18%), Positives = 116/303 (38%), Gaps = 78/303 (25%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
           S+L +   + V  I+ DPP+N     +    D+       D+         +       +
Sbjct: 399 SILPRFK-EKVQTIYIDPPFN-----KEQDADYFYEVDYKDA--------TWATMLENRV 444

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--ILNDIVWRKSNPM---------- 137
              R +L+  G+++V   Y+  + +  ++  +       N+I+  ++  +          
Sbjct: 445 RLGRELLRDTGSIFVRCDYNGNWIVRPLMDEIFGKENFRNEIIVNRTKKIFTGVKGYNVA 504

Query: 138 ----------------PNFRGR----RFQNAH--------ETLIWA--SPSPKAKGYTFN 167
                           P ++ R    ++ N H        E +I+      PK + +TF 
Sbjct: 505 TDDLFFYSKSQGFCFNPQYKRREKAQKWLNMHSPGERRPPERIIFGRLFYPPKGRHWTFT 564

Query: 168 YDALKAANEDVQMRSDWLIPIC----------------------SGSERLRNKDGEKLHP 205
            + +    ++ ++R +  +                         S    +      +  P
Sbjct: 565 QETINKMIKEGRIRINEEVEYIDIKGNKVKGMPQYLTGEDELLDSNWTDIPGYSQNQGFP 624

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T+  E LL R++ S++  GD+++D F GSGT+ AVA KL+R +IG+EM + +  +   R+
Sbjct: 625 TENSEILLKRVIESTSNEGDLVMDFFLGSGTTTAVAHKLKRKWIGVEMGEHFYTVVLPRM 684

Query: 266 ASV 268
             V
Sbjct: 685 KKV 687


>gi|300937239|ref|ZP_07152086.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 21-1]
 gi|300457695|gb|EFK21188.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 21-1]
          Length = 349

 Score = 93.5 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 17/131 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  +  LP  SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPYF---------------KVKPEGWDNQWKGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPVGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHET 151
             +    A+  
Sbjct: 115 CNKESLRAYFP 125



 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 43/83 (51%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++  VA  L 
Sbjct: 265 VPYTDVWTHKPVQFYPGKHPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKVALALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  IG+E++    +   + +  +
Sbjct: 325 RRAIGVELETGRFEQTVREVQDL 347


>gi|309793314|ref|ZP_07687741.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 145-7]
 gi|308122901|gb|EFO60163.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 145-7]
          Length = 349

 Score = 93.5 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 17/131 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  +  LP  SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPYF---------------KVKPEGWDNQWKGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPVGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHET 151
             +    A+  
Sbjct: 115 CNKESLRAYFP 125



 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTHKPVQFYPGKHPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAALALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  IG+E++    +   + +  +
Sbjct: 325 RRAIGVELETGRFEQTVREVQDL 347


>gi|74312383|ref|YP_310802.1| putative DNA adenine methyltransferase encoded by prophage
           [Shigella sonnei Ss046]
 gi|73855860|gb|AAZ88567.1| putative DNA adenine methyltransferase encoded by prophage
           [Shigella sonnei Ss046]
 gi|323168336|gb|EFZ54019.1| DNA methylase family protein [Shigella sonnei 53G]
          Length = 352

 Score = 93.5 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 17/131 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  +  LP  SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPYF---------------KVKPEGWDNQWKGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHET 151
             +    A+  
Sbjct: 115 CNKESLRAYFP 125



 Score = 76.2 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD+I D F G G++   A  L 
Sbjct: 265 VPYTDVWTHKPVQFYPGKHPCEKPAEMLQQIISASSRPGDLIADFFMGLGSTVKAALALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  IG+E++ +  +   + +  +
Sbjct: 325 RRAIGVELETERFEQTVREVQDL 347


>gi|323159624|gb|EFZ45604.1| DNA methylase family protein [Escherichia coli E128010]
          Length = 352

 Score = 93.1 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 17/131 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  ++ LP  SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINADCLEFIQTLPENSVDLIVTDPPYF---------------KVKPEGWDNQWKGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHET 151
             +    A+  
Sbjct: 115 CNKESLRAYFP 125



 Score = 79.6 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 43/83 (51%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD+I D F GSG++   A  L 
Sbjct: 265 VPYTDVWTHKPVQFYPGKHPCEKPAEMLQQIISASSRPGDLIADFFMGSGSTVKAALALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  IG+E++ +  +   + +  +
Sbjct: 325 RRAIGVELETERFEQTVREVQDL 347


>gi|91210506|ref|YP_540492.1| putative prophage CP-933O DNA adenine methyltransferase
           [Escherichia coli UTI89]
 gi|117623488|ref|YP_852401.1| putative DNA adenine methyltransferase encoded by prophage CP-933O
           [Escherichia coli APEC O1]
 gi|187733653|ref|YP_001880053.1| DNA methylase [Shigella boydii CDC 3083-94]
 gi|218558208|ref|YP_002391121.1| DNA adenine methyltransferase ( DNA methylase) from phage origin
           [Escherichia coli S88]
 gi|237705245|ref|ZP_04535726.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|91072080|gb|ABE06961.1| putative DNA adenine methyltransferase encoded by prophage CP-933O
           [Escherichia coli UTI89]
 gi|115512612|gb|ABJ00687.1| putative DNA adenine methyltransferase encoded by prophage CP-933O
           [Escherichia coli APEC O1]
 gi|187430645|gb|ACD09919.1| DNA methylase [Shigella boydii CDC 3083-94]
 gi|218364977|emb|CAR02674.1| putative DNA adenine methyltransferase ( DNA methylase) from phage
           origin [Escherichia coli S88]
 gi|226900002|gb|EEH86261.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|294491791|gb|ADE90547.1| DNA methylase [Escherichia coli IHE3034]
 gi|307627204|gb|ADN71508.1| putative DNA adenine methyltransferase ( DNA methylase) from phage
           origin [Escherichia coli UM146]
 gi|315288675|gb|EFU48073.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 110-3]
 gi|323949606|gb|EGB45492.1| DNA methylase [Escherichia coli H252]
          Length = 349

 Score = 93.1 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 17/131 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  +  LP  SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPYF---------------KVKPEGWDNQWKGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHET 151
             +    A+  
Sbjct: 115 CNKESLRAYFP 125



 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTHKPVQFYPGKHPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  IG+E++    +   + +  +
Sbjct: 325 RRAIGVELETGRFEQTVREVQDL 347


>gi|320175402|gb|EFW50504.1| putative DNA methylase [Shigella dysenteriae CDC 74-1112]
          Length = 349

 Score = 93.1 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 17/131 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  +  LP  SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPYF---------------KVKPEGWDNQWKGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHET 151
             +    A+  
Sbjct: 115 CNKESLRAYFP 125



 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 41/83 (49%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD + D F GSG++   A  L 
Sbjct: 265 VPYTDVWTYKPVQYYPGKHPCEKPAEMLQQIINASSRPGDQVADFFMGSGSTVKAALALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  IG+E++    +   + +  +
Sbjct: 325 RRAIGVELETGRFEQTVREVQDL 347


>gi|187730072|ref|YP_001880669.1| DNA methylase [Shigella boydii CDC 3083-94]
 gi|187427064|gb|ACD06338.1| DNA methylase [Shigella boydii CDC 3083-94]
          Length = 349

 Score = 93.1 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 17/131 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  +  LP  SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPYF---------------KVKPEGWDNQWKGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHET 151
             +    A+  
Sbjct: 115 CNKESLRAYFP 125



 Score = 77.3 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 41/83 (49%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD + D F GSG++   A  L 
Sbjct: 265 VPYTDVWTYKPVQYYPGKHPCEKPAEMLQQIINASSRPGDQVADFFMGSGSTVKAALALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  IG+E++    +   + +  +
Sbjct: 325 RRAIGVELETGRFEQTVREVQDL 347


>gi|315295556|gb|EFU54880.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 16-3]
          Length = 159

 Score = 93.1 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 72/204 (35%), Gaps = 53/204 (25%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P   +D I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNGIDFILTDPPYLVGFRD---RQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R     +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            G R + A+        +   P P   G+ +                             
Sbjct: 108 VGYRHECAYVLAKGRPALPQKPLPDVLGWKY----------------------------- 138

Query: 196 RNKDGEKLHPTQKPEALLSRILVS 219
               G + HPT+KP   L  ++ S
Sbjct: 139 ---SGNRHHPTEKPVTSLQPLIES 159


>gi|161870247|ref|YP_001599417.1| type III restriction/modification system modification methylase
           [Neisseria meningitidis 053442]
 gi|161595800|gb|ABX73460.1| type III restriction/modification system modification methylase
           [Neisseria meningitidis 053442]
          Length = 371

 Score = 93.1 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 82/233 (35%), Gaps = 49/233 (21%)

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRG 142
            +  L   R +L  +G +++   YH +     ++  +   +    +I+WR          
Sbjct: 1   MKNRLEIARELLADDGAIYINLDYHEVHYCKVLMDEIFGEYNFQREIIWRIGWVSGYKTT 60

Query: 143 -RRFQNAHETLIWASPSPKAKGY-------------------TFNYDALKAANEDVQMRS 182
              +   H+T+++ S       +                   T N       N++   + 
Sbjct: 61  VSNYIRNHDTILFYSKDYNHLNFNKYYIDNKHFKVLVDLDRATKNTFTKFGINKETAEKI 120

Query: 183 DWLIPICSGSERLRNKDGEKLH---------------------------PTQKPEALLSR 215
              I   +  ER   +D    +                             QK E LL R
Sbjct: 121 LQEINFSNRPERYPLEDVWNANEYDDLNSIAIVSYSGESVSKMLGLEEIKGQKSEKLLKR 180

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           IL + TKP DI+LD F GSGT+ AVA K+ R +I IE      D   KR+  +
Sbjct: 181 ILEAHTKPNDIVLDFFGGSGTTAAVAHKMNRQYICIEQIDKQTDTIVKRLNKI 233


>gi|170724675|ref|YP_001758701.1| DNA methylase N-4/N-6 domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169810022|gb|ACA84606.1| DNA methylase N-4/N-6 domain protein [Shewanella woodyi ATCC 51908]
          Length = 510

 Score = 93.1 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 63/331 (19%), Positives = 109/331 (32%), Gaps = 87/331 (26%)

Query: 21  DKIIKGNSISVLEKL---PAKSVDLIFADPPYNLQLNGQLYRPD---------------- 61
           + +I+G+++  L+ L    A  V  IF DPPYN +   + Y  +                
Sbjct: 39  NMLIQGDNLEALKALIPTHAGRVKCIFIDPPYNTKSAFEHYDDNLEHSHWLSMIYPRMEL 98

Query: 62  -HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR-RVLKPNGTLW-----------VIGSY 108
            H L+      W      E++  + +  L     R       +W            +   
Sbjct: 99  LHQLLADDGSIWITLDDNESH--YMKVILDEIFGRKNFVANCIWQKLYTVKNSAKYLSDM 156

Query: 109 HNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF-----------------RGRRFQNAHET 151
           H    + +  +N   W  N +   + +                      R       +E 
Sbjct: 157 HEHVLVYS--KNKQIWERNLLPRTEKSASNYSNADDDKRGAWTTNAIQARNYYSLGTYEI 214

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN-----KDG------ 200
           +  +         TF   +  +  +       W     +   R++      KDG      
Sbjct: 215 VSPSGRKHVPPQGTFWRISEDSFKKLDSDNRIWWGKDGNNVPRVKKFLSEAKDGVVPATF 274

Query: 201 -----------------------EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                                  +++  T KPE L+ RIL  ++K GD++LD F GSGT+
Sbjct: 275 WSYQDAGSNADAKKEVREVFNELDEIFITPKPEKLIQRILNIASKEGDLVLDSFLGSGTT 334

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            AV+ K+ R FIGIE+ +    +   R   V
Sbjct: 335 SAVSAKMNRKFIGIELGEHAESLCVHRQKKV 365


>gi|206600247|ref|YP_002241853.1| gp66 [Mycobacterium phage Ramsey]
 gi|206287335|gb|ACI12678.1| gp66 [Mycobacterium phage Ramsey]
          Length = 316

 Score = 93.1 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 56/296 (18%), Positives = 100/296 (33%), Gaps = 60/296 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            ++ G+S   L ++ +++VDL    PP+               V  + +S  +   FE Y
Sbjct: 15  TLLLGDSCERLSEIESETVDLSVCSPPFASLFTYSPS------VRDLGNSASRREFFEHY 68

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYH-------------NIFR--IGTMLQNLNFWIL 126
               R  L    RV KP G L  I                   FR  +    QN  ++  
Sbjct: 69  GFIIREQL----RVTKP-GRLACIHVQQLTTTKATDGYMGMTDFRGQVIAAFQNAGWYFN 123

Query: 127 NDI----------VWRKSNPMPNFRGRRFQNAHET------LIWASP----SPKAKGYTF 166
            ++          +  +S+ +      R   A         L++  P     P     T 
Sbjct: 124 GEVTVWKDPQAQSIRTRSHALAFATKNRDSAATRPALADYLLLFRKPGDNAVPIKNDVTN 183

Query: 167 NYDALKAANEDVQMRSDWLI-------PICSG-------SERLRNKDGEKLHPTQKPEAL 212
           +     A+           +       P+  G       + ++  +  ++ H        
Sbjct: 184 DEWIEWASPIWTDHHDGGWLSDDGHICPVWYGIRETDTLNTKVAKESADERHICPLQLGF 243

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           + R +   + PG+++L PF G G+    A KL R  IGIE+K  Y   A   + ++
Sbjct: 244 VERCVRLWSNPGELVLTPFAGIGSELYQAVKLGRRAIGIELKPSYWRTAVDNMRAL 299


>gi|18249888|ref|NP_543076.1| putative DNA methylase [Enterobacteria phage phiP27]
 gi|18152355|emb|CAC83542.1| putative DNA methylase [Enterobacteria phage phiP27]
          Length = 352

 Score = 92.7 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 17/131 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  ++ LP  SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINADCLEFIQTLPENSVDLIVTDPPYF---------------KVKPEGWDNQWKGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHET 151
             +    A+  
Sbjct: 115 CNKESLRAYFP 125



 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWMYKPVQYYLGKHPCEKPAEMLRQIITTSSRPGDLVADFFMGSGSTVKAAMALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  IG+E++    +   + +  +
Sbjct: 325 RRAIGVELETGRFEQTVREVQDL 347


>gi|74316954|ref|YP_314694.1| adenine specific DNA methylase MOD [Thiobacillus denitrificans ATCC
           25259]
 gi|74056449|gb|AAZ96889.1| adenine specific DNA methylase MOD [Thiobacillus denitrificans ATCC
           25259]
          Length = 577

 Score = 92.7 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 36/108 (33%), Positives = 52/108 (48%)

Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
              YT  Y           + SD      + + +    +G +   T KPE L+SRIL  S
Sbjct: 275 WVPYTREYAPDAPTRPWPTIWSDLHTTRQTKAHQRSVLEGVQAFETPKPEDLVSRILSIS 334

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           T PGD +LD F GSGT+GA A K+ R +I +E+++        R+  V
Sbjct: 335 TNPGDWVLDSFAGSGTTGAAAHKMGRRWIMVELEETCHTHIIPRLRKV 382



 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 55/154 (35%), Gaps = 20/154 (12%)

Query: 12  NQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
           + N IF+  +++I G+++  L+ L    +  V  +F DPPYN                + 
Sbjct: 39  SDNDIFD--NRLIFGDNLLALKALEQEFSGKVKCVFIDPPYNTG--------------SA 82

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILN 127
              +D       +    R  L   RR+L  +G+LW+    +    +  +   +       
Sbjct: 83  FAQYDDGLEHSIWLGLVRDRLEIIRRLLSDDGSLWISIDDNEAHYLKVLCDEIFGRKCFV 142

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
                K    PN         HE ++    +P +
Sbjct: 143 TSFIWKKVDSPNDNKGALSPDHEYILCYVKNPDS 176


>gi|291543314|emb|CBL16423.1| DNA modification methylase [Ruminococcus sp. 18P13]
          Length = 167

 Score = 92.7 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 13/165 (7%)

Query: 102 LWVIGSYHNIFRIGTMLQNLNFW-ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
           + V  ++  I  +    +   F   +  +  +  +P       R   A E  +       
Sbjct: 10  MIVFCAFQQIPEVIRQAEKYGFKNYIPLVFCKNYSPQVLKANIRIVGATEYAL---VLYL 66

Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
            K   F           +    DW+            KD  K+HP+QKP ++L R++   
Sbjct: 67  GKLPKFRNTDANGKRHMIFDHFDWV---------RDGKDIPKIHPSQKPISVLKRLIEIF 117

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T  GD+++DP   SG++   A++L R   G E+ +D+   A K++
Sbjct: 118 TDEGDVVIDPCACSGSTLRAARELGRHSYGFEVSKDFYTKACKQM 162


>gi|312794943|ref|YP_004027865.1| adenine-specific methyltransferase [Burkholderia rhizoxinica HKI
           454]
 gi|312166718|emb|CBW73721.1| Adenine-specific methyltransferase (EC 2.1.1.72) [Burkholderia
           rhizoxinica HKI 454]
          Length = 168

 Score = 92.7 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 63/181 (34%), Gaps = 24/181 (13%)

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
              D      +  A+  + RAWL   RR LKP G L     +  + R+  +++   +   
Sbjct: 12  VYEDFECDNMNPRAWAFWCRAWLTESRRALKPGGLLVCFIDWRQLPRLTDVMRATGWVQR 71

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
              V  K+      R   F+   E ++WAS     +   +                    
Sbjct: 72  GIAVCDKTPSRACPRRGGFKQQTELIVWASKGVIRQRDVY-------------------- 111

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
              +   R       K H T+KP  L +R +V       ++ D F GSGT    AK+   
Sbjct: 112 ---TPGVRPCALGLPKRHLTEKPLEL-ARQIVRLAPADGVVCDLFAGSGTFLVAAKEAGL 167

Query: 247 S 247
           +
Sbjct: 168 N 168


>gi|326346321|gb|EGD70058.1| putative DNA methylase [Escherichia coli O157:H7 str. 1125]
          Length = 240

 Score = 92.7 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 60/156 (38%), Gaps = 19/156 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  +  LP  SVDLI  DPPY                    + WD +++  E 
Sbjct: 11  ELINADCLEFMRSLPENSVDLIVTDPPYF---------------KVKPEGWDNQWAGDED 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +        M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDTEIMMRE-RFNVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
             +    A+           A+ Y   Y    A  E
Sbjct: 115 CNKESLRAYFPA--TERILFAEHYQGPYRPKDAGYE 148


>gi|157156068|ref|YP_001462540.1| DNA methylase [Escherichia coli E24377A]
 gi|157078098|gb|ABV17806.1| DNA methylase [Escherichia coli E24377A]
          Length = 348

 Score = 92.7 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 17/131 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  ++ LP  SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINADCLEFIQTLPENSVDLIVTDPPYF---------------KVKPEGWDNQWKGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRQ-RFNVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHET 151
             +    A+  
Sbjct: 115 CNKESLRAYFP 125



 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 42/77 (54%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD+++D F GSG++   A  L 
Sbjct: 265 VPYTDVWTYKPVQYYPGKHPCEKPADMLRQIITASSRPGDLVVDFFMGSGSTIKAAMTLG 324

Query: 246 RSFIGIEMKQDYIDIAT 262
           R  IG+E++++  +   
Sbjct: 325 RRAIGVELEKERFNQTV 341


>gi|327398832|ref|YP_004339701.1| DNA methylase N-4/N-6 domain-containing protein [Hippea maritima
           DSM 10411]
 gi|327181461|gb|AEA33642.1| DNA methylase N-4/N-6 domain protein [Hippea maritima DSM 10411]
          Length = 323

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 57/322 (17%), Positives = 105/322 (32%), Gaps = 90/322 (27%)

Query: 20  KDKIIKGNSISV----LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           K ++  GN   V    L++     + LI   PP+ L    +                   
Sbjct: 9   KGELFLGNFTEVYSEYLKEHYENKIQLIITSPPFPLNNKKRYGNLTG------------- 55

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTL-------WVIGSYHNIFRIGTMLQNL------N 122
              E Y  +  ++      +LK NG+L       W              L NL      N
Sbjct: 56  ---EEYLKWFESFAPIFSSLLKENGSLVIEIGNVWEKNRPVQSLLHLEALMNLVRHPYAN 112

Query: 123 FWILNDIVWRKSNPMPNFRGR------RFQNAHETLIWASPSPKAK-------------- 162
             ++ + +    + +P+          R  +++  + W + S   K              
Sbjct: 113 LRLIQEFIVYNPSRLPSPAQWVTVNRIRTIDSYTHVWWIAKSDFPKADNRKVLRPYSSSM 172

Query: 163 -----------------GYT--------------FNYDALKAANEDVQMRSDWLIPICSG 191
                             Y                N+  +K  +E  ++R  + +   S 
Sbjct: 173 KNLLKRKKYNSGKRPSEHYIGEKSFLKNNGGSIAHNFFEMKPLDEKREVRLPYNVLSFSN 232

Query: 192 SE------RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           S       +   + G K HP +    + +  +   T   D++LDPF GS T+G VA+ L 
Sbjct: 233 SSSNDYFLKRCRELGIKPHPARMHPGVAAFFIEFLTDENDLVLDPFAGSNTTGYVAEMLN 292

Query: 246 RSFIGIEMKQDYIDIATKRIAS 267
           R +I  E+K++Y++ +  R   
Sbjct: 293 RRWIACELKKEYVEQSKIRFED 314


>gi|262403655|ref|ZP_06080213.1| putative DNA methylase [Vibrio sp. RC586]
 gi|262350159|gb|EEY99294.1| putative DNA methylase [Vibrio sp. RC586]
          Length = 349

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 21/147 (14%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           Q+++ + +  +I  + ++ L+KL   SVDLI  DPPY                    ++W
Sbjct: 3   QHTLHDGRATLIHADCLTYLKKLEDNSVDLILTDPPYF---------------QVKRNAW 47

Query: 73  D-KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           D ++    ++ A+    LL   RVLKP+G+L++            +++N  F + N I+W
Sbjct: 48  DNQWPDVASFLAWLDEVLLEFWRVLKPSGSLYLFCGSKLASDTEILIRN-RFEVFNHIIW 106

Query: 132 RKSNPMPNFRG----RRFQNAHETLIW 154
            K +           R F  A E +++
Sbjct: 107 AKPSGPWRRMHKPDLRMFFPATERILF 133



 Score = 86.2 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 45/84 (53%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
            +P     +    +     HP +KP+ LL  I+  S++  D++LD F GSG++G     L
Sbjct: 266 EVPYTDVWQFAPVQYYPGKHPCEKPQDLLQHIISVSSRENDVVLDAFMGSGSTGKACLSL 325

Query: 245 RRSFIGIEMKQDYIDIATKRIASV 268
            R FIGIEM+++  + A   + ++
Sbjct: 326 NRCFIGIEMEEETFEQALASMKNI 349


>gi|301382136|ref|ZP_07230554.1| putative site-specific DNA methyltransferase [Pseudomonas syringae
           pv. tomato Max13]
 gi|302058960|ref|ZP_07250501.1| putative site-specific DNA methyltransferase [Pseudomonas syringae
           pv. tomato K40]
 gi|302134307|ref|ZP_07260297.1| putative site-specific DNA methyltransferase [Pseudomonas syringae
           pv. tomato NCPPB 1108]
          Length = 430

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 63/171 (36%), Gaps = 34/171 (19%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY----------------------- 58
           ++  G+ + VL  LPA S+D +  DPPY ++  G+ +                       
Sbjct: 4   ELHLGDCLEVLRGLPANSIDSVVTDPPYGIRFMGKSWDGQDIEDRAAYRASMPSHAGACG 63

Query: 59  -RPDHSLVDAVTDSWD-KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
               H  V A    +D       A+ AFT  W     RVLKP G L    +      +  
Sbjct: 64  PNGGHRSVAAEAGKYDLTPDGMRAFQAFTLEWATEALRVLKPGGHLLSFAAARTYHHMAV 123

Query: 117 MLQNLNFWILNDIVWRKSNPMP---NFRGRRF------QNAHETLIWASPS 158
            ++   F I + I+W   +  P   N +G R       + AHE +  A   
Sbjct: 124 GIEMAGFEIRDQIMWVFGSGFPKSHNLKGDRAGWGTALKPAHEPICMARKP 174



 Score = 83.1 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 35/73 (47%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPT KP  L++ +L   T  G   LDPF GSG++G  A      FIGIE    Y+ IA  
Sbjct: 343 HPTVKPTDLMAYLLRLVTPTGGKTLDPFMGSGSTGKAAVLEGFDFIGIEQDAAYMAIAKA 402

Query: 264 RIASVQPLGNIEL 276
           RI         + 
Sbjct: 403 RIGHAHANSQAQQ 415


>gi|323956991|gb|EGB52718.1| DNA methylase [Escherichia coli H263]
          Length = 250

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 60/156 (38%), Gaps = 19/156 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  +  LP  SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINADCLEFIRSLPENSVDLIVTDPPYF---------------KVKPEGWDNQWKGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
             +    A+           A+ Y   Y    A  E
Sbjct: 115 CNKESLRAYFPA--TERILFAEHYQGPYRPKDAGYE 148


>gi|293433587|ref|ZP_06662015.1| DNA methylase [Escherichia coli B088]
 gi|291324406|gb|EFE63828.1| DNA methylase [Escherichia coli B088]
          Length = 352

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 17/131 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  ++ LP  SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINADCLEFIQTLPENSVDLIVTDPPYF---------------KVKPNGWDNQWKGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHET 151
             +    A+  
Sbjct: 115 CNKESLRAYFP 125



 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 44/84 (52%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           L+P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L
Sbjct: 264 LVPYMDVWTHKPVQYYHGKHPCEKPAEMLHQIISASSRPGDLVADFFMGSGSTIKAAMSL 323

Query: 245 RRSFIGIEMKQDYIDIATKRIASV 268
            R  IG+E++ +  +   + +  +
Sbjct: 324 GRRAIGVELETERFEQTVREVQDL 347


>gi|283786281|ref|YP_003366146.1| prophage DNA adenine methylase [Citrobacter rodentium ICC168]
 gi|282949735|emb|CBG89354.1| putative prophage DNA adenine methylase [Citrobacter rodentium
           ICC168]
          Length = 350

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 17/140 (12%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           +N++     ++I  + +  +  LP  S+DLI  DPPY                    + W
Sbjct: 2   KNTVKINSVELINADCLHYIATLPDNSIDLIVTDPPYF---------------KVKPNGW 46

Query: 73  D-KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           D ++   E Y  +    L    RVLKP G+L++   +     I  ++++  F ILN I+W
Sbjct: 47  DNQWKGDEDYLRWLDRCLAEFWRVLKPAGSLYLFCGHRLAADIEILMRD-RFSILNHIIW 105

Query: 132 RKSNPMPNFRGRRFQNAHET 151
            K +   N   +    A+  
Sbjct: 106 AKPSGRWNGCNKESLRAYFP 125



 Score = 81.2 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 44/83 (53%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTHKPVQFYPGKHPCEKPADMLKQIISASSRPGDVVADFFMGSGSTLKAAIDLG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  IG+E++ +  +   + I ++
Sbjct: 325 RKAIGVELETERFNQTVEEIRAL 347


>gi|330465121|ref|YP_004402864.1| hypothetical protein VAB18032_05690 [Verrucosispora maris
           AB-18-032]
 gi|328808092|gb|AEB42264.1| hypothetical protein VAB18032_05690 [Verrucosispora maris
           AB-18-032]
          Length = 125

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 55/98 (56%), Gaps = 1/98 (1%)

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           +  +  HP +KP  LLS ++ +S+ PGDI+LD F GSG++G  A +  R  + +E+++ +
Sbjct: 29  RPFKGKHPAEKPLDLLSHMISASSYPGDIVLDCFAGSGSTGVAALRAGRRAVCMEIEEQW 88

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
              A K +A+ +   ++  T     +  P V F+ L +
Sbjct: 89  CSRAGKELAAAEKGVDLTTTREHHMKKSPVV-FDSLFD 125


>gi|209919268|ref|YP_002293352.1| putative phage DNA methylase [Escherichia coli SE11]
 gi|209912527|dbj|BAG77601.1| putative phage DNA methylase [Escherichia coli SE11]
          Length = 348

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 17/131 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  ++ LP  SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINADCLEFIQTLPENSVDLIVTDPPYF---------------KVKPEGWDNQWKGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHET 151
             +    A+  
Sbjct: 115 CNKESLRAYFP 125



 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 40/82 (48%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S+ PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTHKPVQYYPGKHPCEKPADMLRQIITASSHPGDLVADFFMGSGSTIKAALSLG 324

Query: 246 RSFIGIEMKQDYIDIATKRIAS 267
           R  IG+E +++  +     I  
Sbjct: 325 RHAIGVEQEEERFNQTVSEIKE 346


>gi|218688833|ref|YP_002397045.1| putative DNA adenine methyltransferase ( DNA methylase) from phage
           origin [Escherichia coli ED1a]
 gi|218426397|emb|CAR07223.1| putative DNA adenine methyltransferase ( DNA methylase) from phage
           origin [Escherichia coli ED1a]
          Length = 352

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 59/156 (37%), Gaps = 19/156 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  +   P  SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINADCLEFIRSFPENSVDLIVTDPPYF---------------KVKPEGWDNQWKGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
             +    A+           A+ Y   Y    A  E
Sbjct: 115 CNKESLRAYFPA--TERILFAEHYQGPYRPKDAGYE 148



 Score = 77.3 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTHKPVQYYPGKHPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R   G+E++ +  +   + +  +
Sbjct: 325 RRATGVELETERFEQTVREVQDL 347


>gi|260843572|ref|YP_003221350.1| putative DNA methylase [Escherichia coli O103:H2 str. 12009]
 gi|257758719|dbj|BAI30216.1| putative DNA methylase [Escherichia coli O103:H2 str. 12009]
          Length = 352

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 60/156 (38%), Gaps = 19/156 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           +++  + +  +  LP  SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELVNADCLEFIRSLPENSVDLIVTDPPYF---------------KVKPEGWDNQWKGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
             +    A+           A+ Y   Y    A  E
Sbjct: 115 CNKESLRAYFPA--TERILFAEHYQGPYRPKDAGYE 148



 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTHKPVQYYPGKHPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R   G+E++ +  +   + +  +
Sbjct: 325 RRATGVELETERFEQTVREVQDL 347


>gi|332672826|gb|AEE69643.1| type III restriction enzyme M protein [Helicobacter pylori 83]
          Length = 299

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 46/70 (65%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+ L  T KPEALL RI+  ST+  D++LD F GSGT+  VA KL+R +IGIEM + + 
Sbjct: 116 EGQALFDTPKPEALLKRIIEISTQENDLVLDFFAGSGTTCTVAHKLKRKYIGIEMGEHFD 175

Query: 259 DIATKRIASV 268
            +   R+  V
Sbjct: 176 SMILPRLKKV 185


>gi|188493586|ref|ZP_03000856.1| DNA methylase [Escherichia coli 53638]
 gi|188488785|gb|EDU63888.1| DNA methylase [Escherichia coli 53638]
          Length = 350

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 17/131 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  ++ LP  SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINADCLEFIQTLPENSVDLIVTDPPYF---------------KVKPEGWDNQWKGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLTQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHET 151
             +    A+  
Sbjct: 115 CNKESLRAYFP 125



 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 43/83 (51%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWMHKPVQFYPGKHPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  +G+E++ +  +   K I  +
Sbjct: 325 RRALGVELESERFNQTVKEINEL 347


>gi|254191985|ref|ZP_04898485.1| DNA methylase [Burkholderia pseudomallei Pasteur 52237]
 gi|157987807|gb|EDO95572.1| DNA methylase [Burkholderia pseudomallei Pasteur 52237]
          Length = 390

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 9/90 (10%)

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
             RS W IP  S          +  H    PEAL+   +++ ++PGDI+ DPFFGSGT+G
Sbjct: 303 NRRSVWTIPTQSF---------DGAHFATFPEALVEPCVLAGSRPGDIVFDPFFGSGTTG 353

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            VA++L R F+G E+  DY  +   R+   
Sbjct: 354 QVAQRLGRRFLGCELNPDYESLQFDRLRQT 383



 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 110 NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
             +R+   LQ+  +++  DI+W K NPMP     R   AHE L   S    ++ Y +++D
Sbjct: 147 QPWRLAFALQDAGWYLRQDIIWHKPNPMPESVRDRCTKAHEYLFLLSK---SERYYYDFD 203

Query: 170 ALKAA 174
           A++  
Sbjct: 204 AMQEP 208



 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 8/102 (7%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKS--VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
             W D   +G+   ++  + A    V  I   PPY      + Y PD             
Sbjct: 1   MNWIDHSHRGDCRDLMRAMAADGLRVQTIVTSPPY---WGLRSYLPDGHPDKG--REIGS 55

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLW-VIGSYHNIFRIG 115
             +   +          CR++L  +GTLW  +G  +   R G
Sbjct: 56  EPTLREFIDTLVGVFELCRQLLADDGTLWLNMGDSYAGSRSG 97


>gi|153818467|ref|ZP_01971134.1| DNA methylase [Vibrio cholerae NCTC 8457]
 gi|126511026|gb|EAZ73620.1| DNA methylase [Vibrio cholerae NCTC 8457]
          Length = 351

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 21/147 (14%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           Q+++ + +  +I  + ++ L+KL   SVDLI  DPPY                     +W
Sbjct: 3   QHTLHDGRATLIHADCLTYLKKLEDNSVDLILTDPPYF---------------QVKRQAW 47

Query: 73  D-KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           D ++    ++ A+    LL   RVLKP+G+L++            +++N  F + N I+W
Sbjct: 48  DNQWPDVTSFLAWLDEVLLEFWRVLKPSGSLYLFCGSKLASDTELLIRN-RFEMFNHIIW 106

Query: 132 RKSNPMPNFRG----RRFQNAHETLIW 154
            K +           R F  A E +++
Sbjct: 107 AKPSGPWRRMHKPDLRMFFPATERILF 133



 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 47/85 (55%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
            +P     +    +     HP +KP+ LL  I+ +S++  D++LD F GSG++G     L
Sbjct: 266 EVPYTDVWQFAPVQYYPGKHPCEKPQDLLQHIIAASSRENDVVLDAFMGSGSTGKACLSL 325

Query: 245 RRSFIGIEMKQDYIDIATKRIASVQ 269
            R FIGIEM+++  + A   I +++
Sbjct: 326 NRRFIGIEMEEETFEQALASIKNIK 350


>gi|190890732|ref|YP_001977274.1| helicase/DNA methylase hybrid protein [Rhizobium etli CIAT 652]
 gi|190696011|gb|ACE90096.1| putative helicase/DNA methylase hybrid protein [Rhizobium etli CIAT
            652]
          Length = 1324

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 7/92 (7%)

Query: 184  WLIPICSGSERLRNKD-------GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
            W     +G  +   +D       G +  PT KPE LL RIL  +T PGD+ILD F GSGT
Sbjct: 1046 WWPADEAGHNQEAKRDHLNKLLRGIEPFPTPKPERLLHRILTIATNPGDLILDSFAGSGT 1105

Query: 237  SGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            +GAVA K+ R +I +E+ +        R+  V
Sbjct: 1106 TGAVAHKMGRRWIMVELGEHCHTHIIPRLKKV 1137


>gi|162455643|ref|YP_001618010.1| adenine DNA methyltransferase [Sorangium cellulosum 'So ce 56']
 gi|161166225|emb|CAN97530.1| adenine DNA methyltransferase [Sorangium cellulosum 'So ce 56']
          Length = 338

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 1/97 (1%)

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
           + W  P   G ER   +D   +H  QKP  LL RI+ +S+ PGD++ +PF G  +    A
Sbjct: 242 NVWQEPAVRGPERF-KEDTRSIHGNQKPLKLLDRIIRASSDPGDVVWEPFGGLCSVAVAA 300

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278
               R     E+   Y  +A++R+A   P   +E++ 
Sbjct: 301 FNAGRRCYSAEIAPTYHAVASRRLAKCAPQPRVEISA 337


>gi|85860687|ref|YP_462889.1| type II restriction-modification system methylation subunit
           [Syntrophus aciditrophicus SB]
 gi|85723778|gb|ABC78721.1| type II restriction-modification system methylation subunit
           [Syntrophus aciditrophicus SB]
          Length = 361

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 68/188 (36%), Gaps = 7/188 (3%)

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D F R+      +V+     +           +G ++                   P  R
Sbjct: 13  DQFARSVYYGRYKVIPIRTEIIKFCETMGFDYMGAIIWQKVTTTNTTGGATIMGSFPYPR 72

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
               +  +E +++      A   T      +     V  + DW     SG         +
Sbjct: 73  NGILKLDYEFILFFKKQGNAPKPT-----REQKERSVISKEDWNT-YFSGHWYFSGVK-Q 125

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           + H    PE L +R++      GD +LDPF GSGT+   A+ L R+ IG E+ QD+I   
Sbjct: 126 EGHIAMFPEELPARLIKMFAFVGDTVLDPFLGSGTTSMAARNLERNSIGYEINQDFIPAI 185

Query: 262 TKRIASVQ 269
            +++   Q
Sbjct: 186 RQKLNVCQ 193


>gi|167724489|ref|ZP_02407725.1| DNA modification methylase RsrI [Burkholderia pseudomallei DM98]
          Length = 539

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 18/146 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++   + +     LP  S+DLI ADPPY L  +        S               + +
Sbjct: 30  ELHNRDFLHEAASLPDASIDLIVADPPYGLGKDYGNDSDKRSG--------------DEH 75

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+TR WL      LK  G+++V  ++     I + L+     ++N+I+W +  P     
Sbjct: 76  LAWTREWLELAVPKLKSTGSMYVFCTWQYAPEIFSFLK-TKLTMVNEIIWDRRVPSMGGT 134

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFN 167
            RRF + H+ + + +    +KGY F+
Sbjct: 135 TRRFTSVHDNIGFFA---VSKGYYFD 157


>gi|170290286|ref|YP_001737102.1| DNA methylase N-4/N-6 domain-containing protein [Candidatus
           Korarchaeum cryptofilum OPF8]
 gi|170174366|gb|ACB07419.1| DNA methylase N-4/N-6 domain protein [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 565

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 68/190 (35%), Gaps = 22/190 (11%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
             +     N+  NS   W  K+I G+   VL +LP   +D +   PPY +Q +       
Sbjct: 3   KIEKIFRFNKIDNS---WVPKLILGDVREVLPRLPDNFIDCVITSPPYWMQRDY------ 53

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN--------IFR 113
                   D   +  + E Y           R  LK   T+++   Y             
Sbjct: 54  -----GHPDQIGREGTPEEYVKTIADIFELIRPKLKRTATIFLNVGYKYLNERLILIPEM 108

Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
           I   ++   F + N I+W K N MP     R  N +E +++       + Y FN + +  
Sbjct: 109 IALEMERRGFLLRNKIIWWKPNAMPTPARNRLNNVYEPVLFFIRDDGKEVYYFNLEEISP 168

Query: 174 ANEDVQMRSD 183
            +  +   ++
Sbjct: 169 KSRTLDHYAN 178



 Score = 82.7 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 72/190 (37%), Gaps = 12/190 (6%)

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F R W    +RV   +  + +  SY           +  +W     V R  +     + 
Sbjct: 363 KFLRYW-RNLKRVSIEDIDIELGYSYTAGHWFRL---DFGWWGKGGSVPRPGDWGRLKKL 418

Query: 143 RRFQNAHETL-------IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS-ER 194
             F + ++ L       +      +      +   ++        + ++ I   +G   +
Sbjct: 419 LGFNDIYDKLVTERVAVLQTVKPHETGKNPGDVQGIEVEEILEDFKRNYEIMGEAGDIWK 478

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           ++ +   + H +  P  L+   +     P  ++LDPF GSGT G VA +L R  I IE+ 
Sbjct: 479 IKLEPYPEAHFSIFPTKLVETAMRMGCPPRGVVLDPFAGSGTVGEVAMRLNRKAILIELT 538

Query: 255 QDYIDIATKR 264
            ++ D+  KR
Sbjct: 539 PEFADLIRKR 548


>gi|110633553|ref|YP_673761.1| DNA methylase N-4/N-6 [Mesorhizobium sp. BNC1]
 gi|110284537|gb|ABG62596.1| DNA methylase N-4/N-6 [Chelativorans sp. BNC1]
          Length = 306

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/286 (18%), Positives = 94/286 (32%), Gaps = 43/286 (15%)

Query: 24  IKGNSISVLEKLPAKSVDL-IFADPPYN----------------------------LQLN 54
              + +     LPA S+D  ++  PP++                            ++  
Sbjct: 16  YCADCVPFTAALPANSIDFSVY-SPPFSSLYIYSESVADMGNCASDDEFFEQYRFLVREK 74

Query: 55  GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI 114
            +  RP       V D     +S E   A  R +   C R+    G  W   S   I+R 
Sbjct: 75  FRATRPGRLTAIHVKDLVYYQNSSERGTAGLRPFSDDCTRLHIEEG--WDFHSRITIWR- 131

Query: 115 GTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI--WASPSPKAKGYTFNYDALK 172
              ++ +     + ++W+       F  R     +  +   WAS   + +  T   +   
Sbjct: 132 -DPVREMQKTKAHGLLWKTLRADSTFS-RMGLPEYLLVFRKWASDGEEVRPVTHTKETFP 189

Query: 173 AANEDVQMRSDWLIPICSGSE------RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
                      W  P     E      ++   D ++ H    P  +  R L   +  GD+
Sbjct: 190 VEEWQQYASPVWNYPRQDLPETDVLNVKVARSDKDEKHLCPMPLNITRRALRMWSNRGDV 249

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
           +  PF G G+ G V+ +  R FIG E+   Y   A K +   +  G
Sbjct: 250 VYSPFMGIGSEGVVSIEEGRKFIGTELNPAYFRQAIKNLIDAEASG 295


>gi|284112010|ref|ZP_06386548.1| type II DNA modification enzyme (methyltransferase) [Candidatus
           Poribacteria sp. WGA-A3]
 gi|283829725|gb|EFC34045.1| type II DNA modification enzyme (methyltransferase) [Candidatus
           Poribacteria sp. WGA-A3]
          Length = 457

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/105 (32%), Positives = 58/105 (55%), Gaps = 4/105 (3%)

Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK 222
           G    Y       +   + + W + I + + R + + G   +PTQKP ALL RI+ +S+ 
Sbjct: 261 GNVPRYKRYLDEQKGKTLNNIW-VDIPNLTARNKERIG---YPTQKPIALLERIICASSN 316

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           PGD++LDPF G  T+   A++L+R +IGI++  +   +A  R+  
Sbjct: 317 PGDMVLDPFCGCATTCIAAERLQRHWIGIDLSPESSKLAKLRLEQ 361



 Score = 71.9 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 82/232 (35%), Gaps = 32/232 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW--------- 72
            I +G+++ VL  L A ++DLI+ DPP+N     +      +   A  DSW         
Sbjct: 7   TIFEGDNLYVLRGLDADTIDLIYLDPPFNSNRTFEASIESKAAGAAFKDSWTPNDLDSAW 66

Query: 73  --------------------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
                                   S +AY       +L   R+LKP GTL++    +   
Sbjct: 67  HGELSEKVPNLYHAISTAEFTHGKSMKAYLIMMGIRMLEMYRILKPTGTLYLHCDDNASH 126

Query: 113 RIGTMLQNL--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
            +  M+  +       N+IVW+++        +      + ++  + S     +  +   
Sbjct: 127 YLKMMMDGIFGRENFRNEIVWQRAVTSKGNLKKGLARDSDLILRYAKSNDFV-WNPDAVT 185

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK 222
           +    ED+  ++           R           TQ P++ L+  ++  T+
Sbjct: 186 IPYDMEDLDEKTKRQYYYVEPGTRRLVSHTSITAQTQDPDSHLTYEVMGVTR 237


>gi|169830888|ref|YP_001716870.1| DNA methylase N-4/N-6 domain-containing protein [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169637732|gb|ACA59238.1| DNA methylase N-4/N-6 domain protein [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 545

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 1/82 (1%)

Query: 188 ICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           I +   R+ N   E+L +PTQKPEALL RI+ +S+  GD++LDPF G GT+  VA+ L R
Sbjct: 285 IWADIPRVGNTSKERLGYPTQKPEALLKRIINASSNEGDLVLDPFCGCGTTVTVAELLNR 344

Query: 247 SFIGIEMKQDYIDIATKRIASV 268
            +IGI++    I     R+ S 
Sbjct: 345 RWIGIDITHLAIAHMKHRLESA 366



 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 70/182 (38%), Gaps = 41/182 (22%)

Query: 19  WKDKIIKGNSISVLEK-LPAKSVDLIFADPP------YNLQLNGQLYRPDHSLVDAVTDS 71
           WK+K   G+++ ++   +P  SVDLI+ DPP      YN+    +      + + A  D+
Sbjct: 5   WKNKFYFGDNLGIMRDYIPDGSVDLIYLDPPFNSNATYNVLFQEKNGTQSAAQITAFEDT 64

Query: 72  WDKFSSFEA-------------------------------YDAFTRAWLLACRRVLKPNG 100
           W      E                                Y       LL   RVLK  G
Sbjct: 65  WHWGLESEEAYREVVTGGPKRLADLIQALRSFLGQNDMMAYVVMLAIRLLDMHRVLKSTG 124

Query: 101 TLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
           ++++         +  ++ ++       N+I+WR++N     + R+F   H+ L++ S +
Sbjct: 125 SIYLHCDPTASHYLKLIMDSIFGARHFRNEIIWRRTNAHNM-KSRQFPRIHDVLLFYSKT 183

Query: 159 PK 160
            +
Sbjct: 184 DQ 185


>gi|191169084|ref|ZP_03030846.1| DNA methylase [Escherichia coli B7A]
 gi|190900878|gb|EDV60665.1| DNA methylase [Escherichia coli B7A]
          Length = 349

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 17/131 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  ++ LP  SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINADCLEFIQTLPENSVDLIVTDPPYF---------------KVKPEGWDNQWEGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +        M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPTGSLYLFCGHRLASDTEIMMRE-RFNVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHET 151
             +    A+  
Sbjct: 115 CNKESLRAYFP 125



 Score = 76.2 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTHKPVQYYPGKHPCEKPAEMLQQIINASSRPGDLVADFFMGSGSTVKAAMALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  IG+E++    +   + +  +
Sbjct: 325 RCAIGVELETGRFEQTVREVQDL 347


>gi|169838492|ref|ZP_02871680.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [candidate
           division TM7 single-cell isolate TM7a]
          Length = 100

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/90 (54%), Positives = 65/90 (72%)

Query: 51  LQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
           +Q  G+L R D +  + V D WDKF SF  YD F   WL  C+R+LK +G++ +IGS+ N
Sbjct: 1   MQTEGELLRTDGTKFNGVEDEWDKFDSFYEYDNFCNNWLKECKRILKKDGSICIIGSFQN 60

Query: 111 IFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           IFRIG ++QNL FWI+NDI+W KSNP+PNF
Sbjct: 61  IFRIGYLMQNLEFWIINDIIWNKSNPVPNF 90


>gi|302133240|ref|ZP_07259230.1| DNA methylase N-4/N-6 [Pseudomonas syringae pv. tomato NCPPB 1108]
          Length = 363

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 68/201 (33%), Gaps = 61/201 (30%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            +I+ G+ I ++ KLP +SV      PPY    +             V        +   
Sbjct: 5   HQILVGDCIDMMRKLPDESVHTCVTSPPYYGLRDY-----------GVEGQIGLEETPAE 53

Query: 81  YDAFTRAWLLACRRVLKPNGTLW-VIGSYH------------------------------ 109
           + A         RRVL+ +GT+W  +G  +                              
Sbjct: 54  FIARLVDVFREVRRVLRADGTIWVNMGDSYAGSWGAHGRDDMGVGVSTISQRQVMASQRK 113

Query: 110 ----------------NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
                             +R+   LQ+  +++  DI+W K NPMP     R   +HE L 
Sbjct: 114 SKATTHAEYKPKDLMGMPWRLAFALQDDGWYLRQDIIWHKPNPMPESTRDRCTKSHEYLF 173

Query: 154 WASPSPKAKGYTFNYDALKAA 174
             S SP    Y ++ +A+K  
Sbjct: 174 LLSKSP---RYYYDQNAIKEP 191



 Score = 88.5 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 66/172 (38%), Gaps = 12/172 (6%)

Query: 113 RIGTMLQNLNFWILNDIVWRKSN-PMPNFRGRRFQNAHE--TLIWASPSPKAKGYTFNYD 169
            I  M Q++     +D V  KSN PM   R RR     E      A P      +  + D
Sbjct: 196 SIVRMAQDIEQQHGSDRVPGKSNGPMKAVRSRRDSFKREGSKREQAIPGQTVGTHRPDRD 255

Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
                 +    RS W +P             +  H    P  L+   +++    G ++LD
Sbjct: 256 DSDYPLDVRNKRSVWSVPTVGF---------KGAHFATFPPDLIRPCILAGAPRGGVVLD 306

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
           PF G+GT+  V+ +  R  I  E+  +Y  +A  RI +    G  ++ V   
Sbjct: 307 PFGGAGTTSLVSMQEGRRSIICELNPEYAALARARIDAAWLDGAAQMDVFRD 358


>gi|168697888|ref|ZP_02730165.1| ParB domain protein nuclease [Gemmata obscuriglobus UQM 2246]
          Length = 681

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 3/127 (2%)

Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR--SDWLIPICSGSERLRNKDGEK 202
           F+  H+  +W+    + K Y  +   +              WL      +    +K  + 
Sbjct: 545 FERVHDLEVWSMDVERDKHYVADGIVVHNCLYGWIDGAAHTWLGDRSQTTVLEFDKPAKN 604

Query: 203 -LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             HPT KP  L + +L +S  PG ++LDPF GSGT+ A A++  R+   +E+   Y D+ 
Sbjct: 605 PDHPTPKPAELFAYLLNNSCPPGGLVLDPFAGSGTALAAAEQTGRNAALLELDPRYCDVI 664

Query: 262 TKRIASV 268
            +R  S+
Sbjct: 665 VQRFESL 671



 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 13/136 (9%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G++     +   LP    DL+  DPPYN+  +G+         DA+T + D   
Sbjct: 162 RHRLLCGDATKPADLARLLPDGPADLLLTDPPYNVAYSGKT-------ADALTIANDDM- 213

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           S E Y AF  A L A +  LKP G  +V  +      + T        +   +VW KS  
Sbjct: 214 SPEQYRAFLTAALTAAKAHLKPGGAFYVWHADTAGLDVRTACAAAGLQVRQCLVWVKSAL 273

Query: 137 MPNFRGRRFQNAHETL 152
           +   +   ++  HE  
Sbjct: 274 VLGRQDYHWK--HEPC 287


>gi|254521561|ref|ZP_05133616.1| type III restriction-modification system, methyltransferase
           [Stenotrophomonas sp. SKA14]
 gi|219719152|gb|EED37677.1| type III restriction-modification system, methyltransferase
           [Stenotrophomonas sp. SKA14]
          Length = 508

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 60/329 (18%), Positives = 104/329 (31%), Gaps = 78/329 (23%)

Query: 18  EWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNL----------------------- 51
           +  + +I+G+++  L+ L       V  IF DPPYN                        
Sbjct: 39  DSPNMLIEGDNLDALKALLPYYAGQVKCIFIDPPYNTRSAFDHYDDNLEHAKWLSMMYPR 98

Query: 52  ------------QLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL---------- 89
                        +   L   +      + D      +F A   + + +           
Sbjct: 99  LELLRDLLAEDGSIWITLDDNEAHYFKVIADEVFGRKNFIANAIWQKVFSPKNSARHLSV 158

Query: 90  -LACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-----LNFWILNDIVWRK-----SNPMP 138
                 V   +  +W         R     +N        W   D+  R      + P+ 
Sbjct: 159 DHDHLFVYAKDADIWRPNDMPRSERQTATYKNPDEDPRGPWTSGDLSARNFYGAGTYPIT 218

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP----------I 188
              GR        + W     K +    +      A  +   R    +           I
Sbjct: 219 CPSGRVIPGPPNGMYWRVSKEKFQEMDSDGRIWWGAAGNNAPRIKRFLSEVKQGVVPQTI 278

Query: 189 CSGSERLRNKD---------GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
              S+    ++         G +   T KPE LL R++  +++ GD++LD F GS T+ A
Sbjct: 279 WMNSDVGNTQEAKKEVVALFGSENFMTPKPERLLQRVIHIASEEGDLVLDSFLGSATTSA 338

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           VA K+RR +IGIE+ +    +   R+  V
Sbjct: 339 VAHKMRRKWIGIEVGEHARLLGQPRMKKV 367


>gi|323977145|gb|EGB72232.1| DNA methylase [Escherichia coli TW10509]
          Length = 349

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 17/131 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  ++ LP  SVDLI  DPPY                    +SWD ++   + 
Sbjct: 11  ELINADCLEFIQTLPENSVDLIVTDPPYF---------------KVKPESWDNQWEGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +        M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDTEIMMRE-RFNVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHET 151
             +    A+  
Sbjct: 115 CNKESLRAYFP 125



 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTHKPVQHYPGKHPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  IG+E++    +   + +  +
Sbjct: 325 RRAIGVELETGRFEQTVREVQDL 347


>gi|323186687|gb|EFZ72012.1| hypothetical protein ECRN5871_5079 [Escherichia coli RN587/1]
          Length = 147

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 17/111 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  +  LP  SVDLI  DPPY                    + WD +++  E 
Sbjct: 11  ELINADCLEFMRSLPENSVDLIVTDPPYF---------------KVKPEGWDNQWAGDED 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           Y  +    L    RVLKP G+L++   +        M++   F +LN I+W
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDTEIMMRE-RFNVLNHIIW 105


>gi|313143166|ref|ZP_07805359.1| DNA methyltransferase [Helicobacter cinaedi CCUG 18818]
 gi|313128197|gb|EFR45814.1| DNA methyltransferase [Helicobacter cinaedi CCUG 18818]
          Length = 196

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 63/156 (40%), Gaps = 9/156 (5%)

Query: 116 TMLQNLNFWILNDIVWRKSNPM-PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
             L +L  W   +   +      P  R    QN  E +       K +            
Sbjct: 33  LFLLDLYIWNRTNTTKKLMFGSYPYPRNFYAQNTSEFITIYVKDGKPQNTPQELKEQSKL 92

Query: 175 NEDVQ---MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
           ++       +  W IPI + ++    K     H    PE +  R++   +  GDI+LDPF
Sbjct: 93  SQKEWVQFTKQIWDIPIPNKADSAFGK-----HAAIMPEIIPYRLIKLYSFIGDIVLDPF 147

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            GSGT+  VAK+L R+FIG E+   Y  +  +++  
Sbjct: 148 AGSGTTLKVAKELGRNFIGYEIYPHYKSVIEEKLGE 183


>gi|15837243|ref|NP_297931.1| DNA methyltransferase [Xylella fastidiosa 9a5c]
 gi|9105517|gb|AAF83451.1|AE003909_4 DNA methyltransferase [Xylella fastidiosa 9a5c]
          Length = 380

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 23/164 (14%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++ G++++VL+ LP + +D     PPY                +         + +  + 
Sbjct: 51  LLNGDALAVLKSLPDECIDFAMTSPPY------------WGKREYENGGIGLEADYRDFV 98

Query: 83  AFTRAWLLACRRVLKPNGTLW-VIGSYHN-------IFRIGTMLQNL-NFWILNDIVWRK 133
               A  L  +RVLKP G+ W  IG  +N        +R+   L ++  + + N +VW K
Sbjct: 99  KDLAAIFLELKRVLKPTGSFWLNIGDTYNGKGLVGIPWRVAFELTDVQGWTMRNSVVWNK 158

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
                +    R  N HE L      P  KGY +N DA+++   +
Sbjct: 159 LKGGMDNSKDRLANVHENLFHFVKQP--KGYYYNADAIRSKPRE 200



 Score = 76.6 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 38/84 (45%)

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
              +   P         +      H    P  L  R L+++  PG I+LDPF G+GT+  
Sbjct: 291 YHPNGSKPGDVWDIIPEDTQRRGAHFAPYPLDLCRRPLLATCPPGGIVLDPFCGTGTTLL 350

Query: 240 VAKKLRRSFIGIEMKQDYIDIATK 263
            A  L    +GI++ + Y++++ +
Sbjct: 351 AAGNLGLKSVGIDISRHYLELSQE 374


>gi|237750641|ref|ZP_04581121.1| LOW QUALITY PROTEIN: type IIS restriction enzyme M1 protein
           [Helicobacter bilis ATCC 43879]
 gi|229373731|gb|EEO24122.1| LOW QUALITY PROTEIN: type IIS restriction enzyme M1 protein
           [Helicobacter bilis ATCC 43879]
          Length = 156

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 52/102 (50%)

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
             K  G   N                W I      +++  K  +  HPT KP+ ++ R++
Sbjct: 47  HAKKNGILKNGKRWYPNENGKLCPDVWEITSQRHKQKINGKTQKLHHPTIKPKEMIERMI 106

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
            +S+K GD++LD F GSGT+  VA++L R+FIG E   +Y+D
Sbjct: 107 KASSKKGDLVLDLFSGSGTTSLVARELERNFIGCEASIEYVD 148


>gi|282901316|ref|ZP_06309242.1| DNA modification methylase [Cylindrospermopsis raciborskii CS-505]
 gi|281193811|gb|EFA68782.1| DNA modification methylase [Cylindrospermopsis raciborskii CS-505]
          Length = 348

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 40/67 (59%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
              HP   P  ++  ++   +K GD +LDPF GSGT+   AK L R ++GIE+  DY+++
Sbjct: 272 NNHHPAVYPLYIIQELIKLLSKEGDFVLDPFCGSGTTCLAAKNLNRHYLGIEINPDYVNL 331

Query: 261 ATKRIAS 267
           A  R+A 
Sbjct: 332 ANSRMAE 338



 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 68/170 (40%), Gaps = 22/170 (12%)

Query: 7   LAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           + IN     I  +K+KII G+++SVL+++   + DLI   PPY  Q N            
Sbjct: 1   MLINMPLQEISHFKNKIIFGDNLSVLKQIENDTFDLIITSPPYFQQRNYGNGDL------ 54

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNIFRIGTML------- 118
                    S+   Y          C RVLK  G + + +G  +    +  +        
Sbjct: 55  ----EIGNESTEAEYLNNILTVFQECVRVLKSTGAIVFNLGDKYINGSLSLIPYKFAIQA 110

Query: 119 -QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
            +N N +++N I W K NP P    ++   A E     +    +K Y FN
Sbjct: 111 TENNNIFLINQITWSKLNPTPRQDKKKLIQATEPFFIFAK---SKDYYFN 157


>gi|119715324|ref|YP_922289.1| DNA methylase N-4/N-6 domain-containing protein [Nocardioides sp.
           JS614]
 gi|119535985|gb|ABL80602.1| DNA methylase N-4/N-6 domain protein [Nocardioides sp. JS614]
          Length = 540

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 66/333 (19%), Positives = 109/333 (32%), Gaps = 86/333 (25%)

Query: 21  DKIIKGNSISVLE---KLPA------KSVDLIFADPPYNLQLNGQLY------------- 58
           + +  G+S+ VL     +P         V L++ DPP+N     + Y             
Sbjct: 59  NLLFTGDSLDVLRILTTVPEYARHYKGKVRLVYIDPPFNTGQAFEHYDDWLEHATWLSFM 118

Query: 59  ----RPDHSLVDAVTDSWDKFSSFEAYDA--FTRAWL--------LACRRVLKPNGTLWV 104
               R    L+      W      EA+                  +A +R   P  T   
Sbjct: 119 RDRLRQIRELLTPDGSVWVHLDDAEAHHMRVLLDEVFGPANFLGNVAWKRRNDPRNTAQF 178

Query: 105 IGSYHNIFRIG---------------TMLQ---------NLNFWILNDIVWRKSNPMPNF 140
           I + H+   I                  +              W   D+  R       +
Sbjct: 179 ISADHDQLLIYGRDAARARFNKLERTEAMDSAYTNPDNDERGPWRRGDLAARNFYSRGTY 238

Query: 141 --------------RGRRFQNAHETL--------IWASPSPKAKGY--TFNYDALKAANE 176
                          G  ++ + E L        I+  PS  ++ Y   F  +       
Sbjct: 239 AITTPSGRVVDGPPSGSYWRVSEEELARLDSDGRIYWGPSGDSRPYLKRFLTEVQGGRVP 298

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
                 + +  + +G E +R   G+ +  T KPE LL R+L   + PGD++LD F GSGT
Sbjct: 299 SSVWHPEEVGFVRNGKEEVRALVGD-VFATPKPERLLERVLHIGSDPGDVVLDCFAGSGT 357

Query: 237 SGAVAKKLRRSFIGIE-MKQDYIDIATKRIASV 268
           + AVA K+ R +I  E + +   +    R+  V
Sbjct: 358 TAAVAHKMGRRWITAEVLGETVKEFTRPRLELV 390


>gi|300825231|ref|ZP_07105318.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 119-7]
 gi|331667978|ref|ZP_08368834.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA271]
 gi|300522283|gb|EFK43352.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 119-7]
 gi|331064788|gb|EGI36691.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA271]
          Length = 361

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 17/131 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  ++ LP  SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINADCLEFIQTLPENSVDLIVTDPPYF---------------KVKPEGWDNQWKGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +        M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDTEIMMRE-RFNVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHET 151
             +    A+  
Sbjct: 115 CNKESLRAYFP 125



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 39/80 (48%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG +   A  L 
Sbjct: 265 VPYTDVWTHKPVQYYPGKHPCEKPADMLRQIISASSRPGDVVADFFMGSGATIKAAMGLG 324

Query: 246 RSFIGIEMKQDYIDIATKRI 265
           R  IG+E++    +     I
Sbjct: 325 RRTIGVELESGRFEQTVGEI 344


>gi|46402138|ref|YP_006632.1| putative DNA adenine methylase [Klebsiella phage phiKO2]
 gi|40218282|gb|AAR83068.1| putative DNA adenine methylase [Klebsiella phage phiKO2]
          Length = 353

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 17/140 (12%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           +N++     +++  +S+  ++ LP  S+D I  DPPY                    ++W
Sbjct: 2   ENTVKINSAQLVHADSLEFIKTLPDNSIDAIITDPPY---------------YRVKANAW 46

Query: 73  D-KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           D ++ S   Y A+   +     RVLKP G+L+V            +L++  F +LN I+W
Sbjct: 47  DNQWPSVTDYLAWLDEFFAEFWRVLKPAGSLYVFCGPKLSSDTELLLRD-RFNVLNHIIW 105

Query: 132 RKSNPMPNFRGRRFQNAHET 151
            K +   N   +    A+  
Sbjct: 106 AKPSGRWNGARKEGFRAYFP 125



 Score = 82.7 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 46/98 (46%)

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
            +  N     R    +P  +  E    +     HP +KP  ++  I+ +ST+PGD++ D 
Sbjct: 256 QQYENLRRPFRVTKEVPHTNVWEYPPVQYYPGKHPCEKPLQMMLDIISASTRPGDVVADF 315

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           F GSG +   A +L R  IG+E++++        I  +
Sbjct: 316 FMGSGATIKAALQLGREAIGVELEEERFLQTVSEIEKI 353


>gi|237731137|ref|ZP_04561618.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226906676|gb|EEH92594.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 350

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 69/170 (40%), Gaps = 23/170 (13%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           +N++     ++I  +S+  +  LP  S+DLI  DPPY                    + W
Sbjct: 2   KNTVKINSVELINADSLQYVATLPDNSIDLIVTDPPYF---------------KVKPNGW 46

Query: 73  D-KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           D ++   + Y  +  + L    RVLKP G++++   +     I  M++   F +LN I+W
Sbjct: 47  DNQWKGDDDYLRWLDSCLAEYARVLKPAGSIYLFCGHRLASDIEIMMR-ARFNVLNHIIW 105

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
                     GR      E+L    PS +   +  +Y       EDV  R
Sbjct: 106 ------AKPSGRWNGCNKESLRAYFPSTERILFAEHYLGPYTGKEDVYER 149



 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           L+P          +     HP +KP  +L +I+ +S++PGDI+ D F GSG++   A +L
Sbjct: 264 LVPYTDVWTHKPVQFYPGKHPCEKPADMLKQIISASSRPGDIVADFFMGSGSTVKAAIEL 323

Query: 245 RRSFIGIEMKQD-YIDIATK 263
            R  IG+E++ D +I    +
Sbjct: 324 GRRAIGVELEADRFIQTTEE 343


>gi|163716605|gb|ABY40517.1| putative DNA cytosine methylase [Burkholderia phage Bups phi1]
          Length = 363

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 45/73 (61%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           +  +  +  H    PEAL+   +++ ++PGD++ DPFFGSGT+G VA++L R F+G E+ 
Sbjct: 283 IPTQSFDGAHFATFPEALVEPCVLAGSRPGDVVFDPFFGSGTTGQVAQRLGRRFLGCELN 342

Query: 255 QDYIDIATKRIAS 267
            DY  +   R+  
Sbjct: 343 PDYEPLQRDRLRQ 355



 Score = 59.6 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 58/179 (32%), Gaps = 52/179 (29%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99
           V  I   PPY      + Y PD              S+   +          CR++L  +
Sbjct: 11  VQTIVTSPPY---WGLRSYLPDGHPDKG--SEIGSESTLREFIDTLVGVFELCRQLLVDD 65

Query: 100 GTLW-VIGSYH-------------------------------------------NIFRIG 115
           GTLW  +G  +                                             +R+ 
Sbjct: 66  GTLWLNMGDAYASSGGQTPMRGETFAGRARAKENICLSNRKAGIDGLKVKDLMGQPWRLA 125

Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
             LQ+  +++  DI+W K NPMP     R   AHE L   S    ++ Y +++ A++  
Sbjct: 126 FALQDAGWYLRQDIIWHKPNPMPESVRDRCTKAHEYLFLLSK---SERYYYDFHAMQEP 181


>gi|74317509|ref|YP_315249.1| adenine specific DNA-methyltransferase [Thiobacillus denitrificans
           ATCC 25259]
 gi|74057004|gb|AAZ97444.1| adenine specific DNA-methyltransferase [Thiobacillus denitrificans
           ATCC 25259]
          Length = 779

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 4/128 (3%)

Query: 185 LIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           ++ +     R+     E+L +PTQKPEALL RI+ +S+  GD++ D F GSGT+ AVA+K
Sbjct: 353 VVDLWDEVNRISPTSSERLDYPTQKPEALLERIIKASSNEGDLVADFFCGSGTTAAVAEK 412

Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQ 303
           L R +I  ++ +  +    KR+  VQ             R    +       +  +  G 
Sbjct: 413 LGRKWIATDLGKFGVHTTRKRMIGVQRQLKDSGKPF---RAFEVLNLGRYERQAYLNVGG 469

Query: 304 ILTNAQGN 311
            L   Q  
Sbjct: 470 RLNGHQKE 477



 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 87/213 (40%), Gaps = 32/213 (15%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVD----------LIFADPPYNLQ------- 52
           +     +  W +K+I G++  +L  L + ++           LI+ DPP+++        
Sbjct: 85  DTRGRQLKGWTNKLIWGDNKLILSSLKSGALRQQIEDAGGLKLIYIDPPFDVGADFSMDI 144

Query: 53  -LNGQLYRPDHSLVD--AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
            + G+ +  + +L++  A  D+W + +  +++ +     L+  R +L  +G+++V     
Sbjct: 145 EIGGETFHKEPNLLEQIAYRDTWGRGA--DSFISMVYERLILMRDLLADDGSIYVHMGKT 202

Query: 110 NIFRIGTMLQNLN--FWILNDIVWRKSNPMPNF--RGRRFQNAHETLIWASP------SP 159
               +    + +     I+N+I W++S+   +       F    ET++          +P
Sbjct: 203 VAHYVRLACEEVFGSANIVNEITWKRSHAHGDTGQGASHFGRTTETILLFRKSEKGIWNP 262

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           + K YT +  A      + +    + +    G 
Sbjct: 263 QHKPYTDDVLARDYKYTEEKTGERYRLMPVDGP 295


>gi|146311899|ref|YP_001176973.1| DNA methylase N-4/N-6 domain-containing protein [Enterobacter sp.
           638]
 gi|145318775|gb|ABP60922.1| DNA methylase N-4/N-6 domain protein [Enterobacter sp. 638]
          Length = 348

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 19/178 (10%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           +N++     ++   + + VL  LPA SVDLI  DPPY                    + W
Sbjct: 2   KNTVKINSAELFNADCLQVLALLPADSVDLIITDPPYF---------------KVKPNGW 46

Query: 73  D-KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           D ++     Y  +    L+   RVLKPNG++++   +        +++N  F ILN I+W
Sbjct: 47  DNQWRGDVDYLEWLDKCLVEFWRVLKPNGSIYLFCGHRLSADTELLMRN-RFNILNHIIW 105

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
            K +   N   +    A+           A+ Y   Y   + A +    + + + P+ 
Sbjct: 106 AKPSGRWNGCNKESLRAYFPS--TERVIFAEHYPGPYKPDEYAEQSNTTKQNVMSPLI 161



 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 39/65 (60%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  IG+E++ +  +    
Sbjct: 281 HPCEKPADMLRQIINASSRPGDMVADFFMGSGSTVKAALDLGRRAIGVELEDERFNQTVS 340

Query: 264 RIASV 268
            +  +
Sbjct: 341 EVREL 345


>gi|315173014|gb|EFU17031.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX1346]
          Length = 220

 Score = 91.2 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 87/221 (39%), Gaps = 21/221 (9%)

Query: 54  NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL-ACRRVLKPNGTLWVIGSYHNIF 112
            G++   +    +      D+      +  F    L    + V K    +    ++  + 
Sbjct: 16  GGKIENGESDKANKSFFDTDENFRISEFMHFCSKMLKKEPKEVGKAPAMIV-FCAFQQLQ 74

Query: 113 RIGTMLQNLNFWILNDIVW-RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
            +    +   F     +V+ +KS+P       +   A E  +        K         
Sbjct: 75  MVIDYGKKYGFNNHIPLVFIKKSSPQVLKANMKVVGATEYALVLYREKLPK--------- 125

Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
              N D +M  +W        E   +    K+HPTQKP  ++ R++   T  GD+++DP 
Sbjct: 126 --FNNDGRMVLNWF-------EWETDNSYPKIHPTQKPIPVIKRLIEIFTDYGDVVIDPC 176

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
            GSG++   A +L R+  G E+K++  + + +++ S  P+G
Sbjct: 177 AGSGSTLRAAAELNRNAYGFEIKKEMYEASQEKMLSNIPMG 217


>gi|308183475|ref|YP_003927602.1| type IIS restriction enzyme M1 protein (mod) [Helicobacter pylori
           PeCan4]
 gi|308065660|gb|ADO07552.1| type IIS restriction enzyme M1 protein (mod) [Helicobacter pylori
           PeCan4]
          Length = 136

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 19/145 (13%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +KI   +  + L+KL  KSVDL   DPPYNL++                 SWD F + E 
Sbjct: 4   NKIYIEDVFTFLDKLEDKSVDLAIIDPPYNLKIA----------------SWDSFKNDEE 47

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           +  F+  W+      LK  G+ ++  +  N       L++     LN I W K +   N 
Sbjct: 48  FLTFSYTWIDKMLPKLKDTGSFYIFNTPFNCALFLAYLRHKKVHFLNFITWVKKDGFAN- 106

Query: 141 RGRRFQNAHETLIWASPSPKAKGYT 165
             +R+ +A E++++ S     K YT
Sbjct: 107 AKKRYNHAQESILFYS--MHKKNYT 129


>gi|270692628|ref|ZP_06222937.1| DNA (cytosine-5-)-methyltransferase [Haemophilus influenzae HK1212]
 gi|270316038|gb|EFA28070.1| DNA (cytosine-5-)-methyltransferase [Haemophilus influenzae HK1212]
          Length = 181

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 52/92 (56%)

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
           D    +  +I      E+   K+  KLHPTQKP A+L R++   T  GD+++DP  GS +
Sbjct: 90  DEFNNNGKMIKNWFEWEKDNRKEIPKLHPTQKPIAVLKRLIEIFTDEGDVVIDPVAGSAS 149

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +   A++L R   G E+K+D   IA +++ ++
Sbjct: 150 TLRAARELNRPSYGFEIKKDSCKIAKEQMLNI 181


>gi|193071376|ref|ZP_03052292.1| DNA methylase [Escherichia coli E110019]
 gi|192955292|gb|EDV85779.1| DNA methylase [Escherichia coli E110019]
 gi|315617974|gb|EFU98567.1| DNA methylase family protein [Escherichia coli 3431]
          Length = 354

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 61/156 (39%), Gaps = 23/156 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  ++ LP  SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINADCLEFIQTLPENSVDLIVTDPPYF---------------KVKPEGWDNQWKGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    R+LKP G+L++   +     I  M++   F +LN I+W         
Sbjct: 56  YLKWLDQCLAQFWRLLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIW------AKP 108

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
            GR    + E+L    P+ +   +  +Y        
Sbjct: 109 SGRWNGCSKESLRAYFPATERILFAEHYQGPYQPKN 144



 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWMYKPVQYYPGKHPCEKPADMLRQIIEASSRPGDLVADFFMGSGSTIKAALSLG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  IG+E++ +  +     I  +
Sbjct: 325 RRAIGVELEAERFEQTVSEIREI 347


>gi|325201916|gb|ADY97370.1| conserved hypothetical protein [Neisseria meningitidis M01-240149]
          Length = 751

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 27/212 (12%)

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT--LWVIGSYHN-IFRIGTM 117
            ++ V  +TD        +  + F   ++   +   +  G   +  I       +R G  
Sbjct: 430 KNNTVSTITDEEFSQIYNKDLEVFNDDFIQKLKEKYENLGYNFILPIADKQWGRWRWGYS 489

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
           ++N      + IV +  N +  ++ +R     E     +  PK   Y   Y +       
Sbjct: 490 IKNKARLQTDIIVSQSKNGISLYKKQRP----ELDDLPTKKPKTIFYKPEYSSG------ 539

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                       +G+E+++N  GEK     KPE L+   +  +T   DI+LD   GSGT+
Sbjct: 540 ------------NGTEQMKNLFGEKAFKNPKPEELIQDFITITTNESDIVLDYHLGSGTT 587

Query: 238 GAVAKKLRRSFIGIEMKQDYID-IATKRIASV 268
            AVA K+ R +IGIE + DYI+ +A +R+  V
Sbjct: 588 AAVAHKMNRQYIGIE-QMDYIETLAVERLKKV 618



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 58/198 (29%), Gaps = 14/198 (7%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       V LI+ DPPY      Q     ++    ++        
Sbjct: 243 NLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYYFVKKKQQDSFGYNTNFKLS-------- 294

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNP 136
              +  F +  L   + +L  +G + +         +  +L  +  F      +    N 
Sbjct: 295 --TWLTFMKNRLSIAKELLTDDGIIVISIDDDGNAYLKILLDEIFGFENFIGNLPTIMNL 352

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
             N     F   HE  +  + +     +           E  +          +      
Sbjct: 353 KGNNDEYAFAGTHEYTLVFAKNKDKSTFYEFPIDEDNFLEKWEEDEIGFYKKGAPMRATG 412

Query: 197 NKDGEKLHPTQKPEALLS 214
            +D  +  P      L+ 
Sbjct: 413 TEDKREDRPEMFYPFLVK 430


>gi|302337974|ref|YP_003803180.1| DNA methylase N-4/N-6 domain protein [Spirochaeta smaragdinae DSM
           11293]
 gi|301635159|gb|ADK80586.1| DNA methylase N-4/N-6 domain protein [Spirochaeta smaragdinae DSM
           11293]
          Length = 314

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/252 (15%), Positives = 81/252 (32%), Gaps = 32/252 (12%)

Query: 46  DPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI 105
           DPPYN+++ G        L               +Y  F+R W+ A    L  +   ++ 
Sbjct: 66  DPPYNVEVGGMQSDALSRL------------EITSYIDFSRRWIEAALPALAKDAYFYIW 113

Query: 106 G------SYHNIFRIGTMLQNLNFWI-LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
                  S+  +  +  +++        + I  R                          
Sbjct: 114 IGADQKRSFQPLPEVMMLMRGFPELAAKSFITLRNQRGYGTLSNWMSVRQELLCYVKGKP 173

Query: 159 PKAKGYTFNYDALKAANEDVQMRSDWLI-----------PICSGSERLRNKDGEKLH--P 205
                YT     +    + V       +            + +  +++  +  E +    
Sbjct: 174 GFTVQYTNQPKKVAGYYKKVGGVRKENLARGRSHTLRAGNVWTDIQQVFYRMEENVPGAY 233

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
            QKP A L RI+ S ++ G+++ D F  SGT+   A+ L R     ++   + ++  +R+
Sbjct: 234 AQKPLAALRRIISSGSRSGEVVADFFAHSGTTLLAAEILERRCFTCDIDPVFAELTIRRL 293

Query: 266 ASVQPLGNIELT 277
              +  G     
Sbjct: 294 ERFRQKGKTGWQ 305


>gi|299145512|ref|ZP_07038580.1| DNA (cytosine-5-)-methyltransferase [Bacteroides sp. 3_1_23]
 gi|298516003|gb|EFI39884.1| DNA (cytosine-5-)-methyltransferase [Bacteroides sp. 3_1_23]
          Length = 271

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 71/280 (25%), Positives = 95/280 (33%), Gaps = 71/280 (25%)

Query: 42  LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
           +I  D PY    N                 WD     +A  A          R++K NG 
Sbjct: 1   MILCDLPYGTTQN----------------KWDSVIDLQALWA-------EYERIIKDNGA 37

Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ-NAHETLIWASPSPK 160
           + +  +   IF    +L          I W KS P      ++     HE +        
Sbjct: 38  IVL--TAQGIFTAKLILSKEKL-FKYKITWIKSKPTNFLNAKKQPLRKHEDICIFYK--- 91

Query: 161 AKGYTFNYDALKAANEDVQMRSDWLI---------PICSGSERLRN-------------- 197
            K   +N    K    D  +R D             + S  ER  N              
Sbjct: 92  -KQPVYNPQMTKGEAYDKGIRKDQYTGSYGEFKPQHVKSDGERYPNDVVFFEEDHDDFVY 150

Query: 198 -----KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
                 +GE  HPTQKP  L   ++ + + PGDIILD   GSG+    A    RSFIGIE
Sbjct: 151 VKTAESEGEVYHPTQKPVELGRYLIRTFSNPGDIILDNACGSGSFLLSAILENRSFIGIE 210

Query: 253 MKQ----------DYIDIATKRIASVQPLGNIELTVLTGK 282
             +          DYI I   RI+  + L   E+T  T K
Sbjct: 211 KNEDVLLHRIQPTDYIKICMDRIS--ETLKREEVTPATRK 248


>gi|330445064|ref|ZP_08308717.1| DNA methylase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489255|dbj|GAA03214.1| DNA methylase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 347

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 18/124 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           +++  + +  L+ LP  SVDL+  DPPY                    ++WD ++   E+
Sbjct: 12  QLVNADCLDYLKTLPDSSVDLVLTDPPYF---------------QVKKNAWDNQWPDVES 56

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           + A+    L+   RVLKP+G+L++            ++++  F +L+ IVW K N  P  
Sbjct: 57  FLAWLDEVLVEFWRVLKPSGSLYLFCGSKLASDTELLIRS-RFNVLSHIVWAKPNG-PWL 114

Query: 141 RGRR 144
           R R+
Sbjct: 115 RQRK 118



 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 39/71 (54%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
            +P                HP +KP  LL  ++ +S++   I+LD F GSG++G V +K+
Sbjct: 266 EVPYTDVWTYSPVAYYPGKHPCEKPADLLEHVIAASSREDAIVLDAFMGSGSAGKVCRKM 325

Query: 245 RRSFIGIEMKQ 255
            R FIGIEM++
Sbjct: 326 NRQFIGIEMEE 336


>gi|320536135|ref|ZP_08036188.1| DNA (cytosine-5-)-methyltransferase [Treponema phagedenis F0421]
 gi|320147052|gb|EFW38615.1| DNA (cytosine-5-)-methyltransferase [Treponema phagedenis F0421]
          Length = 299

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 183 DWL---IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
           DW+   I +       R+   +K+HP   P A+  R++   T  G+++LDPF GSGT+  
Sbjct: 29  DWMKNQIGVWEFMYEPRDIRDKKIHPAVFPIAMAKRVIEQFTHRGELVLDPFVGSGTTLL 88

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            A+ L R+ IG ++KQ+Y+D++  RIA+
Sbjct: 89  AAQDLNRNAIGFDLKQEYVDLSNSRIAA 116



 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 53/149 (35%), Gaps = 20/149 (13%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPD------HSLVDAVTDSWD 73
           I  ++ ++  ++   +V L F  PPY    N +   +  R D         V+  +   +
Sbjct: 128 ICDDARNIANRIAPCTVKLAFTSPPYANILNRKRKNKSRRGDLRQNEQFGKVEQYSQDPN 187

Query: 74  KFSSFEAYD---------AFTRAWLLACRRVLKPNGTLWVIG-SYHNIFRIGTMLQNLNF 123
              + EA D         A  +        VL      W+ G        I   +++  +
Sbjct: 188 DLGTLEADDFEKAIAAIFAQMKPVFQEKAHVLINITDAWIDGKRVPLHINIINAMRDAGY 247

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETL 152
              N I+W + N + N     + +++ T+
Sbjct: 248 EFRNTIIWDRRNLVNNIGIFGWPSSYITM 276


>gi|194440206|ref|ZP_03072244.1| DNA methylase [Escherichia coli 101-1]
 gi|194420860|gb|EDX36909.1| DNA methylase [Escherichia coli 101-1]
          Length = 349

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 17/131 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  ++ LP  SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINADCLEFIQTLPENSVDLIVTDPPYF---------------KVKPEGWDNQWEGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +        M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDTEIMMRE-RFNVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHET 151
             +    A+  
Sbjct: 115 CNKESLRAYFP 125



 Score = 76.2 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTHKPVQYYPGKHPCEKPAEMLQQIINASSRPGDLVADFFMGSGSTVKAAMALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  IG+E++    +   + +  +
Sbjct: 325 RCAIGVELETGRFEQTVREVQDL 347


>gi|260844249|ref|YP_003222027.1| putative DNA methylase [Escherichia coli O103:H2 str. 12009]
 gi|257759396|dbj|BAI30893.1| putative DNA methylase [Escherichia coli O103:H2 str. 12009]
          Length = 352

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 17/131 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  ++ LP  SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINADCLEFIQTLPKNSVDLIVTDPPYF---------------KVKPEGWDNQWKGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++  +F +LN I+W K +   N 
Sbjct: 56  YLKWLGQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-HFNVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHET 151
             +    A+  
Sbjct: 115 CNKESLRAYFP 125



 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTHKPVQFYPGKHPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAALALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R   G+E++ +  +   + +  +
Sbjct: 325 RRATGVELEAERFEQTVREVQDL 347


>gi|88811354|ref|ZP_01126609.1| adenine specific DNA-methyltransferase [Nitrococcus mobilis Nb-231]
 gi|88791243|gb|EAR22355.1| adenine specific DNA-methyltransferase [Nitrococcus mobilis Nb-231]
          Length = 460

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 4/118 (3%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                + TQKPE +L RI+   T  GD++ D F GSGT+ AVA+KL R +I  ++ +  I
Sbjct: 46  SERTGYATQKPEEMLERIIKLGTNGGDLVADFFAGSGTTAAVAEKLGRKWIATDLGKFAI 105

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATV 316
               KR+  VQ             R    +       R  +  G  L +A+    A V
Sbjct: 106 HTTRKRLIGVQRELKAADRPF---RAFEVLNLGRYERRAYLNVGGRL-SAEQREQALV 159


>gi|297374640|emb|CBL42927.1| DNA methylase N-4/N-6 domain protein [Candidatus Magnetobacterium
           bavaricum]
          Length = 262

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 53/95 (55%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           +    +   +      +PTQKP ALL RI+++S+  GD++LDPF G GT+   A+KL R 
Sbjct: 10  VWDIDKLNSSAKERLGYPTQKPIALLERIIMASSNEGDLVLDPFCGCGTTVTAAQKLNRQ 69

Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
           +IGI++     ++   R+A +  L       +TG+
Sbjct: 70  WIGIDITHLATNLIKLRLADMFELEPKRDYDVTGE 104


>gi|1072644|pir||S53866 cytosine methylase - phage HP1
 gi|695570|emb|CAA56446.1| cytosine methylase [Halobacterium phage phiH]
          Length = 472

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 88/244 (36%), Gaps = 55/244 (22%)

Query: 6   SLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV 65
           ++ +  ++ +I EW + I +G++  VL +LP  SV ++   PPY    +           
Sbjct: 16  AVVVMASETTISEWVNDIHEGDAEEVLAELPESSVHMVMTSPPYFGLRDY---------- 65

Query: 66  DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW------VIGSY----------- 108
             V        S + Y           RRVL+P+G+ W        GS+           
Sbjct: 66  -GVDGQIGLEDSLDEYIDDLLDVAEQLRRVLRPDGSWWLNLGDSFAGSWGAQSKDETSNN 124

Query: 109 ------------HN-----------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
                        N             R+   LQ+  + + +D VW K NPMP+    R 
Sbjct: 125 ILQHGFPEKNPARNGGLRRKSKMLVPHRVAIALQDAGWIVRSDAVWSKPNPMPHPVKDRL 184

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANE-DVQMRSDWLIPICSGSERLRNKDGEKLH 204
               E +    P P    Y F+ DA++  ++ +   RS         S+R      E L+
Sbjct: 185 HEHKEFVFHLVPEPD---YWFDLDAVRQPHKSNSIERSQREDNRHEHSQRQTAASEETLN 241

Query: 205 PTQK 208
           P Q 
Sbjct: 242 PDQF 245



 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 30/44 (68%)

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
              I+LDPF G+GT+   AK+L R F+G+++  +Y+ +A KR+ 
Sbjct: 402 EPGIVLDPFAGAGTTCLSAKELGRRFLGVDLNPEYVAMAQKRVG 445


>gi|290558936|gb|EFD92322.1| DNA methylase N-4/N-6 domain protein [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 403

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 3/146 (2%)

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
              F   +DI+             +      T          K Y   Y       ++ +
Sbjct: 12  QDGFARKHDIILYYKKGKEITFNSKDIKVERTNTSFFVDEAGKKYWLKYGKRFYFTDEGK 71

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
              DW   I   S   + + G   +PTQKPEALL RI+ +S+  GD++ D F G GT+ A
Sbjct: 72  NPEDWWDDISPLSGPYKERIG---YPTQKPEALLERIIKASSNTGDVVADFFCGGGTTPA 128

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRI 265
           VA++L R +I  ++ +  +++   RI
Sbjct: 129 VAQRLGRRWIASDISRIAVEVTKGRI 154


>gi|121635081|ref|YP_975326.1| putative type III restriction/modification system modification
           methylase [Neisseria meningitidis FAM18]
 gi|120866787|emb|CAM10540.1| conserved hypothetical protein [Neisseria meningitidis FAM18]
          Length = 744

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 27/212 (12%)

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT--LWVIGSYHN-IFRIGTM 117
            ++ V  +TD        +  + F   ++   +   +  G   +  I       +R G  
Sbjct: 418 KNNTVSTITDEEFSQIYNKDLEVFNDDFIQKLKEKYENLGYNFILPIADKQWGRWRWGYS 477

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
           ++N      + IV +  N +  ++ +R     E     +  PK   Y   Y +       
Sbjct: 478 IKNKARLQTDIIVSQSKNGISLYKKQRP----ELDDLPTKKPKTIFYKPEYSSG------ 527

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                       +G+E+++N  GEK     KPE L+   +  +T   DI+LD   GSGT+
Sbjct: 528 ------------NGTEQMKNLFGEKAFKNPKPEELIQDFITITTNESDIVLDYHLGSGTT 575

Query: 238 GAVAKKLRRSFIGIEMKQDYID-IATKRIASV 268
            AVA K+ R +IGIE + DYI+ +A +R+  V
Sbjct: 576 AAVAHKMNRQYIGIE-QMDYIETLAVERLKKV 606



 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 58/198 (29%), Gaps = 14/198 (7%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       V LI+ DPPY      Q     ++    ++        
Sbjct: 231 NLIIKGNNLIALHSLATQFKGKVKLIYIDPPYYFVKKKQQDSFGYNTNFKLS-------- 282

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNP 136
              +  F +  L   + +L  +G + +         +  +L  +  F      +    N 
Sbjct: 283 --TWLTFMKNRLSIAKELLTDDGIIVISIDDDGNAYLKILLDEIFGFENFIGNLPTIMNL 340

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
             N     F   HE  +  + +     +           E  +          +      
Sbjct: 341 KGNNDEYAFAGTHEYTLVFAKNKDKSTFYEFPIDEDNFLEKWEEDEIGFYKKGAPMRATG 400

Query: 197 NKDGEKLHPTQKPEALLS 214
            +D  +  P      L+ 
Sbjct: 401 TEDKREDRPEMFYPFLVK 418


>gi|309701411|emb|CBJ00715.1| phage DNA adenine-methylase [Escherichia coli ETEC H10407]
          Length = 349

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 17/131 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  ++ LP  SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINADCLEFIQTLPENSVDLIVTDPPYF---------------KVKPEGWDNQWEGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +        M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDTEIMMRE-RFNVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHET 151
             +    A+  
Sbjct: 115 CNKESLRAYFP 125



 Score = 76.2 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTHKPVQYYPGKHPCEKPAEMLQQIINASSRPGDLVADFFMGSGSTVKAAMALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  IG+E++    +   + +  +
Sbjct: 325 RCAIGVELETGRFEQTVREVQDL 347


>gi|194430626|ref|ZP_03063079.1| DNA methylase [Escherichia coli B171]
 gi|215486360|ref|YP_002328791.1| predicted DNA methylase [Escherichia coli O127:H6 str. E2348/69]
 gi|312968768|ref|ZP_07782975.1| DNA methylase family protein [Escherichia coli 2362-75]
 gi|194411330|gb|EDX27699.1| DNA methylase [Escherichia coli B171]
 gi|215264432|emb|CAS08792.1| predicted DNA methylase [Escherichia coli O127:H6 str. E2348/69]
 gi|312286170|gb|EFR14083.1| DNA methylase family protein [Escherichia coli 2362-75]
          Length = 349

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 17/131 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  ++ LP  SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINADCLEFIQTLPENSVDLIVTDPPYF---------------KVKPEGWDNQWEGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +        M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDTEIMMRE-RFNVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHET 151
             +    A+  
Sbjct: 115 CNKESLRAYFP 125



 Score = 76.2 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTHKPVQYYPGKHPCEKPAEMLQQIINASSRPGDLVADFFMGSGSTVKAAMALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  IG+E++    +   + +  +
Sbjct: 325 RCAIGVELETGRFEQTVREVQDL 347


>gi|315616051|gb|EFU96675.1| DNA methylase family protein [Escherichia coli 3431]
          Length = 349

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 17/131 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  +  LP   VDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINADCLEFIRSLPENFVDLIVTDPPYF---------------KVKPEGWDNQWKGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRRASDIEIMMRE-RFSVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHET 151
             +    A+  
Sbjct: 115 CNKESLRAYFP 125



 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTHKPVQFYPGKHPCEKPAEMLQQIIRASSRPGDLVADFFMGSGSTVKAALALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  IG+E++    +   + +  +
Sbjct: 325 RRAIGVELETGRFEQTVREVQDL 347


>gi|240147216|ref|ZP_04745817.1| DNA (cytosine-5-)-methyltransferase [Roseburia intestinalis L1-82]
 gi|257200622|gb|EEU98906.1| DNA (cytosine-5-)-methyltransferase [Roseburia intestinalis L1-82]
          Length = 251

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 83/263 (31%), Gaps = 68/263 (25%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            D II  +++  L +LP++SV+     PPY      + Y  D  +         +  + E
Sbjct: 3   TDVIINRDALYALRELPSESVNCCVTSPPY---YGLRDYGLDAQI--------GQEDTPE 51

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI-----------------FRIGTMLQNLN 122
            Y           RRVLK +GT W+  +                     + +   L++  
Sbjct: 52  QYIDRLVEVFRELRRVLKDDGTFWLNIADTYCGTGMKAGCKQKDLIGIPWLLAFALRSDG 111

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA--------- 173
           +++ +DI+W K NPMP     R    +E +   +    +K Y ++  A+           
Sbjct: 112 WYLRSDIIWLKENPMPESCRDRPSRCYEHIFLLTK---SKKYYYDAAAIAEPIAPGTAAR 168

Query: 174 -------------------------ANEDVQMRSDWLIPICSGSERLR---NKDGEKLHP 205
                                             D L+P       +        +  H 
Sbjct: 169 YRQGRGAGHKYAEEVPGQGKVQGINKTRSGGYYDDALMPTTRNKRDVWLINTVPYKGGHF 228

Query: 206 TQKPEALLSRILVSSTKPGDIIL 228
              P  L    +++    G ++L
Sbjct: 229 AAYPPKLAETCILAGCPAGGVVL 251


>gi|90425626|ref|YP_533996.1| DNA methylase N-4/N-6 [Rhodopseudomonas palustris BisB18]
 gi|90107640|gb|ABD89677.1| DNA methylase N-4/N-6 [Rhodopseudomonas palustris BisB18]
          Length = 544

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 88/231 (38%), Gaps = 17/231 (7%)

Query: 50  NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
           N    G+    +   +       DK++  + Y  ++  ++    +   P+G  + +    
Sbjct: 171 NDAKQGRTQYGNVRDIIFFYTKSDKWNWNQQYTPYSEEYVRDFYKFSDPDGRRYRLSDIT 230

Query: 110 NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
                G    N ++ I           +  +         + +          G      
Sbjct: 231 GPG--GAAKGNPSYEIF---------GVTRYWRYSKLRMQQLINEGKVIQTRPGTVPAEK 279

Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
                   V +++DW          L ++     + TQKP ALL RI+ +S+  GD++LD
Sbjct: 280 RYLDEMPGVALQNDW------SDIGLPSRKENLGYGTQKPVALLERIISASSNEGDVVLD 333

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
           PF G GT+   A+KL R++IGI++    I++  +R+    P    E+  + 
Sbjct: 334 PFCGCGTTVHAAQKLNRNWIGIDVTHLAINLIKRRLIDAFPHAQFEIHGVP 384



 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 77/209 (36%), Gaps = 45/209 (21%)

Query: 21  DKIIKGNSISVLE-KLPAKSVDLIFADPP------YNLQLNGQLYRPDHSLVDAVTDSWD 73
           + +  G+++ +L   + ++SVDL++ DPP      YN+  +        + ++A  D+W 
Sbjct: 14  NHLYYGDNLDILGGSIASESVDLVYLDPPFNSNASYNVLFHAPGGESSPAQIEAFDDTWH 73

Query: 74  KFSSFE-------------------------------AYDAFTRAWLLACRRVLKPNGTL 102
              + E                               AY A     LL   RVLKP G+L
Sbjct: 74  WSPTAERAFDEVIQSGNSDVSEMLRAMRSFLKDNDMMAYLAMMAVRLLELHRVLKPTGSL 133

Query: 103 WVIGSYHNIFRIGTMLQNLNFW--ILNDIVWRKSNPMPNFRGRRFQ--NAHETLIWASPS 158
           ++         +  +L  +        +I WR+ +   + +  R Q  N  + + + +  
Sbjct: 134 YLHCDPTASHYLKILLDAVFGKRQFKTEISWRRQSAHNDAKQGRTQYGNVRDIIFFYTK- 192

Query: 159 PKAKGYTFNYDALKAANEDVQMRSDWLIP 187
             +  + +N      + E V+    +  P
Sbjct: 193 --SDKWNWNQQYTPYSEEYVRDFYKFSDP 219


>gi|270700791|ref|ZP_06223041.1| DNA (cytosine-5-)-methyltransferase [Haemophilus influenzae HK1212]
 gi|270315873|gb|EFA27964.1| DNA (cytosine-5-)-methyltransferase [Haemophilus influenzae HK1212]
          Length = 256

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 5/97 (5%)

Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
           +  N + +M  +W        E+   K+  KLHPTQKP A+L R++   T  GD+++DP 
Sbjct: 165 REFNNNGKMIKNWFE-----WEKDNRKEIPKLHPTQKPIAVLKRLIEIFTDEGDVVIDPV 219

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            GS ++   A++L R   G E+K+D   IA +++ ++
Sbjct: 220 AGSASTLRAARELNRPSYGFEIKKDSCKIAKEQMLNI 256


>gi|294341862|emb|CAZ90291.1| putative DNA methylase N-4/N-6 [Thiomonas sp. 3As]
          Length = 519

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 8/117 (6%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +    T KPEAL+ RI+  ++ PGD++LD F GSGT+ AVA K+ R +IGIEM +     
Sbjct: 309 KASFETPKPEALIQRIIHIASNPGDLVLDSFLGSGTTAAVAHKMGRRWIGIEMGEHARTH 368

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
              R+  V       ++   G +      F  L        G+   +A G+I+A V 
Sbjct: 369 CIPRLQKVIDGEQGGISEAVGWKGGGGFRFYTL--------GETAFDAHGHINAAVR 417



 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 59/148 (39%), Gaps = 19/148 (12%)

Query: 21  DKIIKGNSISVLEKL-P--AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + +I+G+++  L+ L P  A  V  IF DPPYN Q              +  + +D    
Sbjct: 36  NLLIQGDNLLALKALIPFYAGRVKCIFIDPPYNTQ--------------SAFEHYDDKLE 81

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSN 135
              + +     L+  R +L  +G++WV    +    +  ++  +      + DI W++ +
Sbjct: 82  HSQWLSMMYPRLVLLRELLTEDGSIWVTIDDNEAHYLKVLMDEVFGRGSFIADIAWKRRD 141

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKG 163
             PN R     + H      +    +K 
Sbjct: 142 GAPNDRKIGAIHDHIFAFSKTRFANSKK 169


>gi|194430409|ref|ZP_03062894.1| DNA methylase [Escherichia coli B171]
 gi|194411547|gb|EDX27884.1| DNA methylase [Escherichia coli B171]
          Length = 349

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 17/131 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  ++ LP  SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINADCLEFIQTLPENSVDLIVTDPPYF---------------KVKPEGWDNQWEGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +        M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDTEIMMRE-RFNVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHET 151
             +    A+  
Sbjct: 115 CNKESLRAYFP 125



 Score = 77.7 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTYKPVQYYPGKHPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  IG+E++    +   + +  +
Sbjct: 325 RRAIGVELETGRFEQTVREVQDL 347


>gi|193062677|ref|ZP_03043771.1| DNA methylase [Escherichia coli E22]
 gi|192931799|gb|EDV84399.1| DNA methylase [Escherichia coli E22]
          Length = 348

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 17/131 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  ++ LP  SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINADCLEFIQTLPENSVDLIVTDPPYF---------------KVKPEGWDNQWKGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +        M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDTEIMMRE-RFNVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHET 151
             +    A+  
Sbjct: 115 CNKESLRAYFP 125



 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTHRPVQYYPGKHPCEKPADMLRQIIEASSRPGDLVADFFMGSGSTIKAALSLE 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  IG+E+ +   +     I ++
Sbjct: 325 RRAIGVELDEGRFNQTVTEIKNI 347


>gi|260854632|ref|YP_003228523.1| putative DNA methylase [Escherichia coli O26:H11 str. 11368]
 gi|257753281|dbj|BAI24783.1| putative DNA methylase [Escherichia coli O26:H11 str. 11368]
 gi|323157258|gb|EFZ43378.1| DNA methylase family protein [Escherichia coli EPECa14]
          Length = 349

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 17/131 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  ++ LP  SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINADCLEFIQTLPENSVDLIVTDPPYF---------------KVKPEGWDNQWEGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +        M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDTEIMMRE-RFNVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHET 151
             +    A+  
Sbjct: 115 CNKESLRAYFP 125



 Score = 75.8 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTHKPVQYYPGKHPCEKPAEMLQQIINASSRPGDLVADFFMGSGSTVKAAMALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  IG+E++    +   + +  +
Sbjct: 325 RCAIGVELETGRFEQTVREVQDL 347


>gi|325132432|gb|EGC55125.1| hypothetical protein NMBM6190_0834 [Neisseria meningitidis M6190]
          Length = 736

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 27/212 (12%)

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT--LWVIGSYHN-IFRIGTM 117
            ++ V  +TD        +  + F   ++   +   +  G   +  I       +R G  
Sbjct: 410 KNNTVSTITDEEFSQIYNKDLEVFNDDFIQKLKEKYENLGYNFILPIADKQWGRWRWGYS 469

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
           ++N      + IV +  N +  ++ +R     E     +  PK   Y   Y +       
Sbjct: 470 IKNKARLQTDIIVSQSKNGISLYKKQRP----ELDDLPTKKPKTIFYKPEYSSG------ 519

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                       +G+E+++N  GEK     KPE L+   +  +T   DI+LD   GSGT+
Sbjct: 520 ------------NGTEQMKNLFGEKAFKNPKPEELIQDFITITTNESDIVLDYHLGSGTT 567

Query: 238 GAVAKKLRRSFIGIEMKQDYID-IATKRIASV 268
            AVA K+ R +IGIE + DYI+ +A +R+  V
Sbjct: 568 AAVAHKMNRQYIGIE-QMDYIETLAVERLKKV 598



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 58/198 (29%), Gaps = 14/198 (7%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       V LI+ DPPY      Q     ++    ++        
Sbjct: 223 NLIIKGNNLIALHSLATQFKGKVKLIYIDPPYYFVKKKQQDSFGYNTNFKLS-------- 274

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNP 136
              +  F +  L   + +L  +G + +         +  +L  +  F      +    N 
Sbjct: 275 --TWLTFMKNRLSIAKELLTDDGIIVISIDDDGNAYLKILLDEIFGFENFIGNLPTIMNL 332

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
             N     F   HE  +  + +     +           E  +          +      
Sbjct: 333 KGNNDEYAFAGTHEYTLVFAKNKDKSTFYEFPIDEDNFLEKWEEDEIGFYKKGAPMRATG 392

Query: 197 NKDGEKLHPTQKPEALLS 214
            +D  +  P      L+ 
Sbjct: 393 TEDKREDRPEMFYPFLVK 410


>gi|308182975|ref|YP_003927102.1| adenine-specific DNA methylase [Helicobacter pylori PeCan4]
 gi|308065160|gb|ADO07052.1| adenine-specific DNA methylase [Helicobacter pylori PeCan4]
          Length = 299

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 46/70 (65%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+ L  T KPEALL RIL  STK  D++ D F GSGT+ AVA K++R +IG+EM + + 
Sbjct: 116 EGQALFDTPKPEALLQRILEISTKENDLVCDFFAGSGTTCAVAHKMKRKYIGVEMGEHFE 175

Query: 259 DIATKRIASV 268
            +   R+  V
Sbjct: 176 SVILPRLKKV 185


>gi|78221896|ref|YP_383643.1| DNA methylase N-4/N-6 [Geobacter metallireducens GS-15]
 gi|78193151|gb|ABB30918.1| DNA methylase N-4/N-6 [Geobacter metallireducens GS-15]
          Length = 520

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/68 (47%), Positives = 43/68 (63%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +    T KPEALL RI+  +T PGD++LD F GSGT+ AVA K+ R +IGIEM +  +  
Sbjct: 310 KAAFETPKPEALLQRIIHIATNPGDLVLDSFLGSGTTAAVAHKMGRRWIGIEMGEHAVTH 369

Query: 261 ATKRIASV 268
              R+  V
Sbjct: 370 CLPRLEKV 377



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 50/140 (35%), Gaps = 17/140 (12%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + +I+G+++  L+ L       V  I+ DPPYN Q              +    +D    
Sbjct: 37  NLLIQGDNLKALKALLPFYRGRVKCIYIDPPYNTQ--------------SAFAHYDDKLE 82

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
              + +     L+  R +LK +G+LW+    +    I  ++  +   +   I        
Sbjct: 83  HSQWLSMMYPRLVLLRELLKEDGSLWISCDDNEAHYIKVIVDEIFGRLNFIIDVSWQKRD 142

Query: 138 PNFRGRRFQNAHETLIWASP 157
                R+    HE ++    
Sbjct: 143 GPPNDRKIGAIHEHILVWGK 162


>gi|13488060|ref|NP_085633.1| DNA methyltransferase [Mesorhizobium loti MAFF303099]
 gi|14027882|dbj|BAB54474.1| DNA methyltransferase [Mesorhizobium loti MAFF303099]
          Length = 614

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 6/119 (5%)

Query: 187 PICSGSERLRNKDGEKLH-PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
            I +  + L N+  E+LH PTQKP +LL RIL SS   G+++LDPF G GT+ A A+   
Sbjct: 321 DIWTDIKPLHNRAAERLHYPTQKPVSLLDRILRSSANVGEVVLDPFCGCGTTIAAAQLAG 380

Query: 246 RSFIGIEMKQDYIDIATKRIASVQ-----PLGNIELTVLTGKRTEPRVAFNLLVERGLI 299
           R +IGI++    I +   R+A +       LG I     +  R   R  +        +
Sbjct: 381 RQWIGIDVAYHAIRVIEDRLADMPGKIDYDLGGIPRDFASAARLAERDKYQFQWWANYL 439



 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 83/228 (36%), Gaps = 44/228 (19%)

Query: 17  FEWKDKIIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQ--LYRPD----HSLVDAVT 69
            E K+++  G+++++L + +  +SVDL++ DPP+N Q+N       PD     + V+A  
Sbjct: 39  PEMKNQLWFGDNLTILREEIADESVDLVYLDPPFNSQVNYNVLFRTPDEDAASAQVEAFR 98

Query: 70  DSW----------DKF--------------------SSFEAYDAFTRAWLLACRRVLKPN 99
           D+W          D+                     S   AY       L   RRVL+P 
Sbjct: 99  DTWTWGPEAKWAFDEIMHTGGGVTPIVHALHAALGDSDMMAYLVMMAQRLHELRRVLRPT 158

Query: 100 GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
           G+L++         +  +L  +                 +   RR+   H+ L++ S   
Sbjct: 159 GSLYLHCDPTASHYLKIILDAIFGPTNFLNEVIWKRTSAHSSARRYGPIHDVLLFYSRGE 218

Query: 160 KAKG------YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           +         Y   Y       ED   R  W     +G+ +   + G+
Sbjct: 219 RHCWNAQYQPYDAEYLDTFFDQEDADGRR-WKRTDLTGAGKRNGETGK 265


>gi|330507997|ref|YP_004384425.1| DNA methylase [Methanosaeta concilii GP-6]
 gi|328928805|gb|AEB68607.1| DNA methylase [Methanosaeta concilii GP-6]
          Length = 687

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 77/169 (45%), Gaps = 23/169 (13%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +PTQKPE L+SRI+ + TK GD++ D F GSGT+GAVA++L R +I  ++ +  I  + K
Sbjct: 355 YPTQKPEKLVSRIIEALTKEGDLVADFFCGSGTTGAVAERLGRRWIMCDLGRFAIHTSRK 414

Query: 264 RIASVQ----------------PLGNIELTVLTGKRTE------PRVAFNLLVERGLIQP 301
           R+  +Q                 LG  E      +R +       RV         L  P
Sbjct: 415 RLIDLQRRLQADGQPYRAFDVYNLGRYERQWWQRERLQGFDRDHRRVVLGFYRADPLANP 474

Query: 302 GQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSE-TCNGWNF 349
              L   +G     V +  +L++  E+ ++ R   +  G E  C  W F
Sbjct: 475 TAWLHGRKGGAFVYVDSIDSLLTREEVRAVARAAREAGGKEVHCLAWEF 523



 Score = 71.9 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 73/167 (43%), Gaps = 20/167 (11%)

Query: 17  FEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN----------GQLYRPDHS 63
           +++++ +I G++  V+  L       +DLI+ DPP+++  +            +   D S
Sbjct: 76  YDFRNMLIWGDNKLVMASLLKDFRGKIDLIYIDPPFDVGADFTMQVPLGDFDDVAEKDQS 135

Query: 64  LVD--AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
           L++  A  D W   +  ++Y       L+    +L  +G + V         I  +L  +
Sbjct: 136 LLEMVAYRDMWGNGT--DSYLNMIYERLVLMHDLLAESGHILVHCDQRVNVYIRLLLHEV 193

Query: 122 N--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
                 LN+IVW++++      G   +N+ + +IW + S   + + F
Sbjct: 194 FGEEHFLNEIVWQRTSAGKTVSGNLPKNS-DYIIWCTKSDTYQFFGF 239


>gi|325198519|gb|ADY93975.1| conserved hypothetical protein [Neisseria meningitidis G2136]
          Length = 736

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 27/212 (12%)

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT--LWVIGSYHN-IFRIGTM 117
            ++ V  +TD        +  + F   ++   +   +  G   +  I       +R G  
Sbjct: 410 KNNTVSTITDEEFSQIYNKDLEVFNDDFIQKLKEKYENLGYNFILPIADKQWGRWRWGYS 469

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
           ++N      + IV +  N +  ++ +R     E     +  PK   Y   Y +       
Sbjct: 470 IKNKARLQTDIIVSQSKNGISLYKKQRP----ELDDLPTKKPKTIFYKPEYSSG------ 519

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                       +G+E+++N  GEK     KPE L+   +  +T   DI+LD   GSGT+
Sbjct: 520 ------------NGTEQMKNLFGEKAFKNPKPEELIQDFITITTNESDIVLDYHLGSGTT 567

Query: 238 GAVAKKLRRSFIGIEMKQDYID-IATKRIASV 268
            AVA K+ R +IGIE + DYI+ +A +R+  V
Sbjct: 568 AAVAHKMNRQYIGIE-QMDYIETLAVERLKKV 598



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 58/198 (29%), Gaps = 14/198 (7%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       V LI+ DPPY      Q     ++    ++        
Sbjct: 223 NLIIKGNNLIALHSLATQFKGKVKLIYIDPPYYFVKKKQQDSFGYNTNFKLS-------- 274

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNP 136
              +  F +  L   + +L  +G + +         +  +L  +  F      +    N 
Sbjct: 275 --TWLTFMKNRLSIAKELLTDDGIIVISIDDDGNAYLKILLDEIFGFENFIGNLPTIMNL 332

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
             N     F   HE  +  + +     +           E  +          +      
Sbjct: 333 KGNNDEYAFAGTHEYTLVFAKNKDKSTFYEFPIDEDNFLEKWEEDEIGFYKKGAPMRATG 392

Query: 197 NKDGEKLHPTQKPEALLS 214
            +D  +  P      L+ 
Sbjct: 393 TEDKREDRPEMFYPFLVK 410


>gi|256819717|ref|YP_003140996.1| DNA methylase N-4/N-6 domain-containing protein [Capnocytophaga
           ochracea DSM 7271]
 gi|256581300|gb|ACU92435.1| DNA methylase N-4/N-6 domain protein [Capnocytophaga ochracea DSM
           7271]
          Length = 753

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/295 (16%), Positives = 101/295 (34%), Gaps = 49/295 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK--FSSFEA 80
           ++KG+S   ++++P  SVDLI   PP++       Y  D    ++  D + +  F   + 
Sbjct: 449 LMKGDSCIEIKRIPDNSVDLIIFSPPFSSLFTYSNYIHDMGNNESHEDFFKQYTFLLHDL 508

Query: 81  YDAFTRAWLLAC-------RRVLKPNGTLWVIGSYHNIFRIGTMLQ---NLNFWILNDIV 130
           Y       L+ C        +       L+     H+        +    +N W    + 
Sbjct: 509 YRILKPGRLMVCHTKDLAVYKNSSGYTGLYDFTGDHHRAVEAVGFKYHSKVNIWTDPVLE 568

Query: 131 WRKSNPMPNFRGRRFQNAHETLI----WASPSPKAKGYTFNYDALKAANEDVQM---RSD 183
            +++        +  +++  T +    + +   K +G   ++  +   N++         
Sbjct: 569 MQRTKTQRLLYKQLRKDSSYTGVGLPEYCTIFRKWEGNEEDWTPINNKNKENFPLDVWQH 628

Query: 184 WLIPICS------------------------------GSERLRNKDGEKLHPTQKPEALL 213
           W  P  +                                ++     G++ H      +++
Sbjct: 629 WASPTWNVEKGDIDHLHEVMEDYKVNTWFDIKRTDVLNGKKEATDLGDEKHIAPLQLSVI 688

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            R +   +  G+ +  PF G G+    A  L R  IGIE+K  Y + A K I  V
Sbjct: 689 KRCVQMWSNKGETVFTPFLGIGSEIYEAVTLERYGIGIELKDKYFETAVKNINMV 743


>gi|326335107|ref|ZP_08201304.1| modification methylase HindIII [Capnocytophaga sp. oral taxon 338
           str. F0234]
 gi|325692637|gb|EGD34579.1| modification methylase HindIII [Capnocytophaga sp. oral taxon 338
           str. F0234]
          Length = 251

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 40/66 (60%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPT KP  L+  ++   T  G I+LDPF GSG++G       R +IG E++ +Y DI+ K
Sbjct: 178 HPTLKPVELMQHLVKLITFEGQIVLDPFSGSGSTGLACLMNDRKYIGYELETNYYDISLK 237

Query: 264 RIASVQ 269
           RI  ++
Sbjct: 238 RIEDLE 243


>gi|239584281|gb|ACR82895.1| AmgB [Streptomyces sp. KCTC 9047]
          Length = 290

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 95/271 (35%), Gaps = 37/271 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++ + ++ + L  LPA+ V L+   P +                    DS D  S    +
Sbjct: 19  RLTRADATAFLASLPARDVRLVVTSPWF--------------TGPFTADSADPVSP--RF 62

Query: 82  DAFTRAWLLACRRVLKPNGTLW--VIGSYHNIFRIGTM----------------LQNLNF 123
             +   +L    RVL P+G++   +  ++     + T                 L    +
Sbjct: 63  TEWITGFLREIERVLLPDGSVVLEMGCTWAEDAPVRTAQNLAAIAALLASGTWKLLQEFY 122

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
           W   D +  K   +   RG R ++   T  W + +P            ++          
Sbjct: 123 WYNPDFLLAKDEWVEE-RGIRLRDCVTTWFWLARTPDVPVDNRRVRGFQSHLTHPFGNFL 181

Query: 184 WLIPICSGSERLRNKDGEKLHPTQ--KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
                      L     E   P++   P A  +  +   T+PG+ ++DPF G G++   A
Sbjct: 182 AFGDADVDQAYLDRCRAEGTRPSEDRFPVAAPAYFIRLLTEPGEHVVDPFVGIGSTALAA 241

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
           +   R +   +   + +++A +R+ + +  G
Sbjct: 242 ELSGRRWSCNDFSAEAVEVARRRLLAARSAG 272


>gi|308062654|gb|ADO04542.1| adenine-specific DNA methylase [Helicobacter pylori Cuz20]
          Length = 289

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/65 (49%), Positives = 43/65 (66%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
             T KPEALL RI+  ST+  D++LD F GSGT+ AVA KL+R +IGIEM + +  +   
Sbjct: 111 FDTPKPEALLKRIIEISTQENDLVLDFFAGSGTTCAVAHKLKRKYIGIEMGEHFDSVILP 170

Query: 264 RIASV 268
           R+  V
Sbjct: 171 RLKKV 175


>gi|109946810|ref|YP_664038.1| type IIS restriction enzyme M1 protein fragment 2 [Helicobacter
           acinonychis str. Sheeba]
 gi|109714031|emb|CAJ99039.1| type IIS restriction enzyme M1 protein fragment 2 [Helicobacter
           acinonychis str. Sheeba]
          Length = 171

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 62/158 (39%), Gaps = 1/158 (0%)

Query: 101 TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
                 ++          +  N    + + +        F     + A+E+        +
Sbjct: 2   HFLNFITWVKKDGFANAKKRYNHAQESILFYSMHKKNYTFNADEIRIAYESTE-RIKHAQ 60

Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
           +KG   N                W I      E+   K  +  HP+ KP+AL+ R++ +S
Sbjct: 61  SKGILKNNKRWFPNPNGKLCLDVWEIASQRHVEKENGKILKPKHPSIKPKALIERMIKAS 120

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +   D+ILD F GSG +  VAK L R+FIG E   +Y+
Sbjct: 121 SHKNDLILDLFSGSGMTSLVAKSLGRNFIGCESHAEYV 158


>gi|289450512|ref|YP_003475499.1| DNA (cytosine-5-)-methyltransferase [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289185059|gb|ADC91484.1| DNA (cytosine-5-)-methyltransferase [Clostridiales genomosp. BVAB3
           str. UPII9-5]
          Length = 632

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 152 LIWASPSPKAKGYT-FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
           +IW         Y  F  +A    N    +  D      +    ++  D + +  T K E
Sbjct: 392 IIWGKNGKGRPQYKRFLSEANLKGNSINTIWDDVDTATSATKHLMQLFDTKNVFSTPKSE 451

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI-DIATKRIASV 268
           +L+ RI+  ST   DI+LD F GSGT+ AVA K+ R +IG+E + DYI DI  +R+  V
Sbjct: 452 SLIERIISISTNEKDIVLDFFTGSGTTAAVAHKMGRRYIGVE-QMDYIQDITVERLKKV 509



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 69/206 (33%), Gaps = 17/206 (8%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
           E   +  +  + IIKGN++  L  L       V  I  DPPYN Q +             
Sbjct: 179 ETGITFNDNDNLIIKGNNLIALAGLLKRYEGKVKCICIDPPYNTQND------------- 225

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
            + +++   +   +  F +  L  C+R+L   G++++I   +       +  ++     +
Sbjct: 226 -SFNYNDSFNHSTWLTFMKNRLEICKRLLATTGSIFIILDDNEYAYCKVLTDDILGRENH 284

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
              +  ++            +H  ++        + Y  + D    +N D   R  W   
Sbjct: 285 KATFIWNHRKSKQNDIDISLSHNYVMCYIKESSTRLYPLSVDEEGFSNPDNDPRGPWKAD 344

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALL 213
                    N      +P+   + L 
Sbjct: 345 PFDAPNIRPNLTYAITNPSTGDQHLP 370


>gi|167573518|ref|ZP_02366392.1| DNA modification methylase RsrI [Burkholderia oklahomensis C6786]
          Length = 301

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 18/146 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++   + ++    LP  S+DLI ADPPY L  +        S               + +
Sbjct: 33  ELHNRDFLTEAASLPDASIDLIVADPPYGLGKDYGNDSDKRSG--------------DEH 78

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+TR WL      LK +G+++V  ++     I + L+     ++N+I+W +  P     
Sbjct: 79  LAWTREWLDLAIPKLKSSGSMYVFCTWQYAPEIFSFLK-TKLTMVNEIIWDRRVPSMGGT 137

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFN 167
            RRF + H+ + + +    +KGY F+
Sbjct: 138 TRRFTSVHDNIGFFA---VSKGYYFD 160


>gi|282897342|ref|ZP_06305344.1| DNA modification methylase [Raphidiopsis brookii D9]
 gi|281197994|gb|EFA72888.1| DNA modification methylase [Raphidiopsis brookii D9]
          Length = 357

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 39/67 (58%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
              HP   P  ++  ++   TK GD +LDPF GSGT+   A+ L R ++GIE+  DY+++
Sbjct: 281 NNHHPAVYPLYIIQELIKLLTKEGDFVLDPFCGSGTTCIAARNLSRKYLGIEINPDYVNL 340

Query: 261 ATKRIAS 267
           A  R+  
Sbjct: 341 ANNRMEE 347



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 70/168 (41%), Gaps = 19/168 (11%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           Q  + +++++II G+++S+L+++   + DLI   PPY  Q +   Y  D+  +   T   
Sbjct: 16  QQQVLDFRNQIILGDNLSILKQIENDTFDLIITSPPYFQQRD---YGNDNLGIGNET--- 69

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNIFRIGTML--------QNLNF 123
               +   Y          C RVLK  G + + +G  +    +  +         QN + 
Sbjct: 70  ----TQAEYLENILTVFWECVRVLKKTGAIVFNLGDKYINGSLSLIPYKFAIQATQNQSI 125

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
           +++N I+W K NP P    R+   A E     + S        NY   
Sbjct: 126 FLINQIMWSKLNPTPRQDKRKLIQATEPFFLFAKSKDYYFNVDNYLQH 173


>gi|323650434|gb|ADX97291.1| M.EcoNI [Escherichia coli]
          Length = 731

 Score = 90.0 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 87/251 (34%), Gaps = 16/251 (6%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+  G+   VL +LP    D      PY    N + Y    ++   + D +  F   E Y
Sbjct: 490 KLYNGDCFEVLSQLPDSIFDGAITSLPY---YNAKEYSSWKNIYCYLYDIYGMFQ--ETY 544

Query: 82  DAFTRAWLLACRRVLKPNG----TLWVIGSYHNIF--RIGTMLQNLNFWILNDIVWRKSN 135
             F    +         +         +G    I    I  + +   F ++ + VW K  
Sbjct: 545 RTFKEGGIFLFNIFDYFDNENTIVFSQMGKKRLILSSYIIYLAKKAGFKLVGNCVWDKGE 604

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
                +G R  N      +         +   +   ++   +    +       +   ++
Sbjct: 605 I----QGNRNFNQGNNSPYYQAPLNCWEHILIFAKSESGRFNNIADNIPTKHKSTPVFKI 660

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
              +    H     + + + IL+   + G ++LDP+ GS T+G  A     + IG+E  +
Sbjct: 661 IKGENIYGHSAPFSKKIPN-ILLEKMEKGSLVLDPYSGSMTTGRAALDFGINSIGMEFHE 719

Query: 256 DYIDIATKRIA 266
           DY  ++ K I 
Sbjct: 720 DYCHLSPKEIR 730


>gi|208435263|ref|YP_002266929.1| adenine-specific DNA methylase [Helicobacter pylori G27]
 gi|208433192|gb|ACI28063.1| adenine-specific DNA methylase [Helicobacter pylori G27]
          Length = 299

 Score = 90.0 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 47/70 (67%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+ L  T KPEALL RIL  ST+  D++LD F GSGT+ AVA K++R +IG+EM + + 
Sbjct: 116 EGQALFDTPKPEALLQRILEISTQENDLVLDFFAGSGTTCAVAHKMKRKYIGVEMGEHFE 175

Query: 259 DIATKRIASV 268
            +   R+  V
Sbjct: 176 CVILPRLKKV 185


>gi|27311183|ref|NP_758910.1| ORF17 [Vibrio phage VHML]
 gi|26891703|gb|AAN12315.1| ORF17 [Vibrio phage VHML]
          Length = 359

 Score = 90.0 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 63/147 (42%), Gaps = 20/147 (13%)

Query: 13  QNSIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
           Q  +   K+  +   +   +L+ LP  SVDLI  DPPY                DA  + 
Sbjct: 3   QKKLEPRKNITVFNADCSQLLKTLPDNSVDLIATDPPYF-----------RVKQDAXDNQ 51

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           WD  +    + A+    L    R+LKP+G+L++  S     R   ++    F +LN IVW
Sbjct: 52  WDDET---EFLAWLDDILFDLWRILKPSGSLYLFCSDRLAARTEVLIAE-RFNVLNHIVW 107

Query: 132 RKSNPMPNFRG----RRFQNAHETLIW 154
           RK N +         RRF    E +I+
Sbjct: 108 RKENGVHKRHRKEGLRRFCPQTERIIF 134



 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 40/84 (47%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P     +    +     HP +KP  L+  I+ +S + G ++LDPF GSG +     +L 
Sbjct: 268 VPYTDVWDFDPVQYYPGKHPCEKPLPLMRHIVSTSAREGMVVLDPFMGSGATAKACIELG 327

Query: 246 RSFIGIEMKQDYIDIATKRIASVQ 269
             F+G+EM  D      K +A  +
Sbjct: 328 CHFVGVEMDDDIFSATAKSLAEYK 351


>gi|261340392|ref|ZP_05968250.1| DNA (cytosine-5-)-methyltransferase [Enterobacter cancerogenus ATCC
           35316]
 gi|288317484|gb|EFC56422.1| DNA (cytosine-5-)-methyltransferase [Enterobacter cancerogenus ATCC
           35316]
          Length = 376

 Score = 90.0 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/66 (45%), Positives = 43/66 (65%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +  HPT KP AL+S +    T PG  +LDP+ GSG++G  A +   +FIGI++  DY+ I
Sbjct: 301 KNNHPTVKPIALMSYLCRLITPPGGTVLDPWMGSGSTGRAAIEEGFNFIGIDLNPDYVTI 360

Query: 261 ATKRIA 266
           A+ RIA
Sbjct: 361 ASARIA 366



 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 52/146 (35%), Gaps = 30/146 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++  G    VL+ LP  SVD I  DPPY L                +   WD       Y
Sbjct: 4   QLHVGRCEYVLKTLPDNSVDAIVTDPPYGLSF--------------MNHKWD-------Y 42

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF- 140
           D  T      C RVLKP G L   G      R+    ++  F I + I+W   +  P   
Sbjct: 43  DVPTVEQWQECLRVLKPGGHLLAFGGSRTYHRLVVNAEDAGFEIRDQILWIYGSGFPKSH 102

Query: 141 --------RGRRFQNAHETLIWASPS 158
                    G   + AHE ++ A   
Sbjct: 103 NLDGDFDGWGTALKPAHEPIVMARKP 128


>gi|254670016|emb|CBA04773.1| type III restriction-modification system: methylase [Neisseria
           meningitidis alpha153]
          Length = 349

 Score = 90.0 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 27/212 (12%)

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT--LWVIGSYHN-IFRIGTM 117
            ++ V  +TD        +  + F   ++   +   +  G   +  I       +R G  
Sbjct: 23  KNNTVSTITDEEFSQIYNKDLEVFNDDFIQKLKEKYENLGYNFILPIADKQWGRWRWGYS 82

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
           ++N      + IV +  N +  ++ +R     E     +  PK   Y   Y +       
Sbjct: 83  IKNKARLQTDIIVSQSKNGISLYKKQRP----ELDDLPTKKPKTIFYKPEYSSG------ 132

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                       +G+E+++N  GEK     KPE L+   +  +T   DI+LD   GSGT+
Sbjct: 133 ------------NGTEQMKNLFGEKAFKNPKPEELIQDFITITTNESDIVLDYHLGSGTT 180

Query: 238 GAVAKKLRRSFIGIEMKQDYID-IATKRIASV 268
            AVA K+ R +IGIE + DYI+ +A +R+  V
Sbjct: 181 AAVAHKMNRQYIGIE-QMDYIETLAVERLKKV 211


>gi|317501178|ref|ZP_07959383.1| DNA methylase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316897354|gb|EFV19420.1| DNA methylase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 222

 Score = 90.0 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 84/246 (34%), Gaps = 31/246 (12%)

Query: 29  ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
           +  + + P K  D+   DPPY    N + Y               ++   + +D     +
Sbjct: 1   MDGMREFPDKFFDIAVVDPPYFAGPNKRRY--YGRSESTTLIKRREYDIIDTWDVPGMEY 58

Query: 89  LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
                RV + +  +W    +   F                IVW K      F       +
Sbjct: 59  FDELIRVSR-HQIVWGCNYFDYHF------------GSGRIVWDKCRSNMTF-------S 98

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
              + + S     K + + +D +       +        I  G+++       ++HPTQK
Sbjct: 99  DAEIAYCSLHDTVKTFRYMWDGMMQGKSVDEGW------IQKGNKKTNEH---RIHPTQK 149

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           P  L   I     KPG  +LD   GS +S     +    ++G E+ +     A KR+  V
Sbjct: 150 PIDLYRWIAREYIKPGWNVLDTHTGSASSLIAYHEAGIRYVGFEINEKMYQKARKRLKEV 209

Query: 269 QPLGNI 274
           +   +I
Sbjct: 210 ENQLSI 215


>gi|254672179|emb|CBA05031.1| type III restriction-modification system: methylase [Neisseria
           meningitidis alpha275]
          Length = 344

 Score = 90.0 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 27/212 (12%)

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT--LWVIGSYHN-IFRIGTM 117
            ++ V  +TD        +  + F   ++   +   +  G   +  I       +R G  
Sbjct: 23  KNNTVSTITDEEFSQIYNKDLEVFNDDFIQKLKEKYENLGYNFILPIADKQWGRWRWGYS 82

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
           ++N      + IV +  N +  ++ +R     E     +  PK   Y   Y +       
Sbjct: 83  IKNKARLQTDIIVSQSKNGISLYKKQRP----ELDDLPTKKPKTIFYKPEYSSG------ 132

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                       +G+E+++N  GEK     KPE L+   +  +T   DI+LD   GSGT+
Sbjct: 133 ------------NGTEQMKNLFGEKAFKNPKPEELIQDFITITTNESDIVLDYHLGSGTT 180

Query: 238 GAVAKKLRRSFIGIEMKQDYID-IATKRIASV 268
            AVA K+ R +IGIE + DYI+ +A +R+  V
Sbjct: 181 AAVAHKMNRQYIGIE-QMDYIETLAVERLKKV 211


>gi|308389493|gb|ADO31813.1| putative type III restriction/modification methylase [Neisseria
           meningitidis alpha710]
          Length = 723

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 51/212 (24%), Positives = 91/212 (42%), Gaps = 27/212 (12%)

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI---GSYHNIFRIGTM 117
            ++ V  +TD        +  + F   ++   +   +  G  +++         +R G  
Sbjct: 402 KNNTVSTITDEEFSQIYNKDLEVFNDDFIQKLKEKYENLGYNFILPIANKQWGRWRWGYS 461

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
           ++N      + IV +  N +  ++ +R     E     +  PK   Y   Y +       
Sbjct: 462 IKNKARLQTDIIVSQSKNGISLYKKQRP----ELDDLPTKKPKTIFYKPEYSSG------ 511

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                       +G+E+++N  GEK     KPE L+   +  +T   DI+LD   GSGT+
Sbjct: 512 ------------NGTEQMKNLFGEKAFKNPKPEELIQDFITITTNENDIVLDYHLGSGTT 559

Query: 238 GAVAKKLRRSFIGIEMKQDYID-IATKRIASV 268
            AVA K+ R +IGIE + DYI+ +A +R+  V
Sbjct: 560 AAVAHKMNRQYIGIE-QMDYIETLAVERLKKV 590



 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 58/198 (29%), Gaps = 14/198 (7%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       V LI+ DPPY      Q     ++    ++        
Sbjct: 215 NLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYYFVKKKQQDSFGYNTNFKLS-------- 266

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNP 136
              +  F +  L   + +L  +G + +         +  +L  +  F      +    N 
Sbjct: 267 --TWLTFMKNRLSIAKELLTDDGIIVISIDDDGNAYLKILLDEIFGFENFIGNLPTIMNL 324

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
             N     F   HE  +  + +     +           E  +          +      
Sbjct: 325 KGNNDEYAFAGTHEYTLVFAKNKDKSTFYEFPIDEDNFLEKWEEDEIGFYKKGAPMRATG 384

Query: 197 NKDGEKLHPTQKPEALLS 214
            +D  +  P      L+ 
Sbjct: 385 TEDKREDRPEMFYPFLVK 402


>gi|91202366|emb|CAJ75426.1| partial CDS, similar to adenine specific DNA methylase [Candidatus
           Kuenenia stuttgartiensis]
          Length = 488

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 66/326 (20%), Positives = 98/326 (30%), Gaps = 78/326 (23%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD---------------- 61
           + +I G+++  L+ L    A  +     DPPYN     + Y                   
Sbjct: 41  NMLIFGDNLLALKALEQDFAGEIKCACIDPPYNTGNAFEHYDDGLEHSIWLSLMKPRIEI 100

Query: 62  -HSLVDAVTDSWDKFSSFEAY-------DAFTRAWLLA---CRRVLKPNGTLWVIGSYHN 110
            H L+      W      EA+       + F R   +A    +    P      I   HN
Sbjct: 101 IHKLLRDDGTLWITIDDTEAHYLKILCDEVFGRGNFVANIVWQSKDTPGNNAIAIAQTHN 160

Query: 111 IFRIG--------TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL---------- 152
              +          +L      + N +        P       +  H             
Sbjct: 161 HILVFKKGALFRPNLLARNEKQLANYVNPDNDPRGPWLAAPLTRVEHRDRDYYAIRNPVG 220

Query: 153 ---------IWASPSPKAKGYTFNYDALKAANEDVQMRSD---------------WLIPI 188
                     W  P  K K    +         D +   +               W    
Sbjct: 221 REVFPPKGSSWRRPPEKMKWLEDDGRIWWGKKGDAEFPMEKKFLSEAKEGVVNQTWWAYD 280

Query: 189 CSGSERLRNKD------GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
             GS R  + +      G K   T KPE L+ RI   +T P D +LD F GSGT+ AVA 
Sbjct: 281 FGGSTRNASAEMKGLFEGRKSFDTPKPEKLIQRIFEIATNPSDWVLDSFLGSGTTAAVAH 340

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASV 268
           K+ R +IGIE+ +        R+  V
Sbjct: 341 KMWRRWIGIELGEHCHTHCLPRLKKV 366


>gi|66046061|ref|YP_235902.1| DNA methylase N-4/N-6 [Pseudomonas syringae pv. syringae B728a]
 gi|63256768|gb|AAY37864.1| DNA methylase N-4/N-6 [Pseudomonas syringae pv. syringae B728a]
          Length = 373

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 65/208 (31%), Gaps = 68/208 (32%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            +I+ G+ I ++  LP +SV      PPY    +             V        +   
Sbjct: 5   HQILVGDCIDMMRTLPDESVHTCVTSPPYYGLRDY-----------GVEGQIGLEETPAE 53

Query: 81  YDAFTRAWLLACRRVLKPNGTLW-VIGSYH------------------------------ 109
           + A         RRVL+ +GT+W  +G  +                              
Sbjct: 54  FIARLVDVFREVRRVLRADGTIWVNMGDSYAGSWGSQGRPQGDGQMSGRSVTSARQINEH 113

Query: 110 -----------------------NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
                                    +R+   LQN  +++  DI+W K NPMP     R  
Sbjct: 114 PSFKSGTGVRGREMSMKPKDLMGMPWRLAFALQNDGWYLRQDIIWNKPNPMPESVRDRCT 173

Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAA 174
            +HE +   S    +K Y F+  A+   
Sbjct: 174 KSHEYIFLLSK---SKKYYFDQTAILEP 198



 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 39/90 (43%)

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
              +     +  H    P  L+   +++    G ++LDPF G+GT+  V+ +  R  +  
Sbjct: 278 VWTVATHSFKGAHFATFPPDLIRPCILAGAPRGGVVLDPFGGAGTTSLVSMQEGRRSVIC 337

Query: 252 EMKQDYIDIATKRIASVQPLGNIELTVLTG 281
           E+  +Y  +A  RI +    G  ++ V   
Sbjct: 338 ELNPEYAALARARIDAAWLDGAAQMDVFRD 367


>gi|320162134|ref|YP_004175359.1| hypothetical protein ANT_27330 [Anaerolinea thermophila UNI-1]
 gi|319995988|dbj|BAJ64759.1| hypothetical protein ANT_27330 [Anaerolinea thermophila UNI-1]
          Length = 263

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 57/140 (40%), Gaps = 21/140 (15%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
           +Q N+ +   NQ    E  ++I  G+S+ VL+K+P  S+DLIF  PPYN  L        
Sbjct: 130 AQDNNFSKISNQLP-PEMTNQIFCGDSLEVLKKIPDNSIDLIFTSPPYNFGLEY------ 182

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV-----IGSY-HNIFRIG 115
                   +  D    ++ Y     A    C RVLK  G + V        Y  +   I 
Sbjct: 183 --------ERQDDAHKWDLYFEKLFAIFDECIRVLKFGGRIAVNIQPLFSDYIPSHHLIS 234

Query: 116 TMLQNLNFWILNDIVWRKSN 135
               +       +I+W K+N
Sbjct: 235 NFFISRRMIWKGEILWEKNN 254


>gi|308185164|ref|YP_003929297.1| putative type III restriction enzyme M protein [Helicobacter pylori
           SJM180]
 gi|308061084|gb|ADO02980.1| putative type III restriction enzyme M protein [Helicobacter pylori
           SJM180]
          Length = 612

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/71 (53%), Positives = 50/71 (70%), Gaps = 2/71 (2%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+ L  T KPEALL RIL  STK  D++LD F GSGT+ AVA K++R +IGIE + DYI
Sbjct: 423 EGQALFDTPKPEALLQRILEISTKENDLVLDFFAGSGTTCAVAHKMKRRYIGIE-QMDYI 481

Query: 259 D-IATKRIASV 268
           + I  +R+  V
Sbjct: 482 ETITKERLKKV 492



 Score = 63.5 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 81/232 (34%), Gaps = 30/232 (12%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            + +IKGN++  L  L    AK V  I+ DPPYN   +   Y              D F 
Sbjct: 165 TNYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNY-------------NDNF- 210

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSN 135
           +  ++  F +  L A R  L  +G ++V    +    +  ++  +       + +  +  
Sbjct: 211 NHSSWLVFMKNRLEAAREFLSDDGVIFVQCDDNEQAYLKVLMDEIFGRDNFVNTIIWEKK 270

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY----DALKAANEDVQMRSDWL---IPI 188
             P    + F + H+ ++  +   +               +  N D   R  W    + +
Sbjct: 271 YSPQNHTKWFSDNHDFILLYAKDKEIWRPILLPRTSEMDARYKNLDNDERGVWKSSDLSV 330

Query: 189 CSGSERLRNK-----DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
            S  ER           ++++P      + S+  +      + I  P  GSG
Sbjct: 331 GSAVERNIYPIFNPYTKQEIYPPHGRSWVYSQEKLQELIADNRIFFPTSGSG 382


>gi|124269005|ref|YP_001023009.1| DNA modification methylase-like protein [Methylibium petroleiphilum
           PM1]
 gi|124261780|gb|ABM96774.1| DNA modification methylase-like protein [Methylibium petroleiphilum
           PM1]
          Length = 227

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 46/71 (64%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           DG   +PTQKPEALL RI+ + T  GD++ D F GSGT+ AVA+KL R +I  ++ +  +
Sbjct: 128 DGSIGYPTQKPEALLERIVKACTNEGDLVADFFVGSGTTAAVAEKLGRKWIATDLGKFGV 187

Query: 259 DIATKRIASVQ 269
               KR+  VQ
Sbjct: 188 HTTRKRLIGVQ 198



 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 63/159 (39%), Gaps = 25/159 (15%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVD----------LIFADPPYNLQ------- 52
           +        W +K+I G++  +L  L A  +           LI+ DPP+++        
Sbjct: 21  DSRGRQTKGWSNKLIWGDNKLILSSLKAGPLRQQIEHAGGLKLIYIDPPFDVGADFSMDV 80

Query: 53  -LNGQLYRPDHSLVD--AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
            + G+ +  + +L++  A  D+W + +  +++ +     L+  + +L  +G++       
Sbjct: 81  EIGGETFHKEANLLEQIAYRDTWGRGA--DSFISMLYERLVLMKDLLSNDGSIGYPTQKP 138

Query: 110 NIF--RIGTMLQNLNFWILNDIVWRKSN-PMPNFRGRRF 145
                RI     N    + +  V   +   +    GR++
Sbjct: 139 EALLERIVKACTNEGDLVADFFVGSGTTAAVAEKLGRKW 177


>gi|268686802|ref|ZP_06153664.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae SK-93-1035]
 gi|268627086|gb|EEZ59486.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae SK-93-1035]
          Length = 605

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 27/212 (12%)

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT--LWVIGSYHN-IFRIGTM 117
            ++ V  +TD        +  + F   ++   +   +  G   +  I       +R G  
Sbjct: 279 KNNTVSTITDEEFSQIYNKDLEVFNDDFIQKLKEKYENLGYNFILPIADKQWGRWRWGYS 338

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
           ++N      + IV +  N +  ++ +R     E     +  PK   Y   Y +       
Sbjct: 339 IKNKARLQTDIIVSQSKNGISLYKKQRP----ELDDLPTKKPKTIFYKPEYSSG------ 388

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                       +G+E+++N  GEK     KPE L+   +  +T   DI+LD   GSGT+
Sbjct: 389 ------------NGTEQMKNLFGEKAFKNPKPEELIQDFITITTNENDIVLDYHLGSGTT 436

Query: 238 GAVAKKLRRSFIGIEMKQDYID-IATKRIASV 268
            AVA K+ R +IGIE + DYI+ +A +R+  V
Sbjct: 437 AAVAHKMNRQYIGIE-QMDYIETLAVERMKKV 467



 Score = 49.6 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 59/198 (29%), Gaps = 14/198 (7%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       V LI+ DPPY        Y       D+    ++    
Sbjct: 92  NLIIKGNNLIALHSLAKQFKGKVKLIYIDPPY--------YFVKKKPQDSFG--YNTNFK 141

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNP 136
              +  F +  LL  + +L  +G + +         +  +L  +  F      +    N 
Sbjct: 142 LSTWLTFMKNRLLIAKELLTDDGIIVISIDDDGNAYLKILLDEIFGFENFIGNLPTIMNL 201

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
             N     F   HE  +  + +     +           E  +          +      
Sbjct: 202 KGNNDEYAFAGTHEYTLVFAKNKDKSTFYEFPIDEDNFLEKWEEDEIGFYKKGAPMRATG 261

Query: 197 NKDGEKLHPTQKPEALLS 214
            +D  +  P      L+ 
Sbjct: 262 TEDKREDRPEMFYPFLVK 279


>gi|29565978|ref|NP_817549.1| gp100 [Mycobacterium phage Cjw1]
 gi|29424703|gb|AAN01714.1| gp100 [Mycobacterium phage Cjw1]
          Length = 187

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 43/116 (37%), Gaps = 19/116 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I  G+   +L +L   SVD I  DPPY L   G+               WD         
Sbjct: 22  IHLGDCRDILAELEDASVDSIVTDPPYELGFMGK--------------KWDGSG-----I 62

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           AF       C RVLKP G L   G      R+   +++  F I + I W   +  P
Sbjct: 63  AFDVEMWEQCLRVLKPGGHLLAFGGSRTWHRLTVAIEDAGFEIRDSIAWLYGSGFP 118


>gi|209524713|ref|ZP_03273260.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
 gi|209494857|gb|EDZ95165.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
          Length = 439

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 54/325 (16%), Positives = 104/325 (32%), Gaps = 72/325 (22%)

Query: 22  KIIKGNSISVLEKLPAK-----SVDLIFADPPYN-------------------------- 50
           ++  G+++ VL  L  +     S++LI+ DPP+                           
Sbjct: 49  RLYFGDNLDVLRLLATEPEICGSINLIYIDPPFATESHFLSRKQSKAYDDTLTGAMFVEF 108

Query: 51  -----------LQLNGQLY-RPDHSLVDAVTDSWDKFSSFEAYDAFT-------RAWLLA 91
                      L  +G +Y   D  ++  +    D+    E Y           + +   
Sbjct: 109 LRERLIWLHQLLSNHGSIYLHLDEKMIFHIKLIMDEIFGAENYRNMIVRQKCNPKNYTRR 168

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF----------- 140
                      +     +   +    L   +      I                      
Sbjct: 169 TYGKTADFILFYTKSDTYIWNQPKVPLSENSKKEYQYIEPETGRQFMKVPLHAPGVRHGE 228

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS-------- 192
            G+ ++            P       +       +++   R    +   SG         
Sbjct: 229 TGKPWRGKMPPPGKHWQYPPKTLDEMDARGEIFWSKNGNPRRKVYLNEHSGVGVQDIWLE 288

Query: 193 ERLRNKDGEKL--HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
            R       K+  +PT+K   LL RI+ +S+ PGD+ILD F GSGTS A+A +++R++IG
Sbjct: 289 FRDAYNQNVKITGYPTEKNPDLLRRIIAASSNPGDLILDGFAGSGTSLAIADEMQRNWIG 348

Query: 251 IEMKQDYIDIATKRIAS-VQPLGNI 274
           ++   +       R    ++P+G+ 
Sbjct: 349 VDHSIEAFKTILNRFEHGIKPMGDF 373


>gi|154244502|ref|YP_001415460.1| DNA methylase N-4/N-6 domain-containing protein [Xanthobacter
           autotrophicus Py2]
 gi|154158587|gb|ABS65803.1| DNA methylase N-4/N-6 domain protein [Xanthobacter autotrophicus
           Py2]
          Length = 752

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 15/195 (7%)

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
           ++  E Y  + + ++    R   P+G      S +        LQ   +      + R  
Sbjct: 254 YTLNETYQEYDQDYVDQYYRYKDPSGR--RFMSDNLN---AAGLQGGGYPYEWKGIKRTW 308

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
              P    R  +   E  I+ + +   +   +  +A   + + +         +  G E 
Sbjct: 309 RCPPETMKRLDE---EGKIFYTKNGVPRLKRYLDEAKGLSCQTLWADKAVQYVVSWGQE- 364

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                    + TQK E+LLSRI+ +S+KPGD+I D F GSGT+ AVA+KL R +IG ++ 
Sbjct: 365 ------NTGYETQKSESLLSRIIDASSKPGDLIADFFCGSGTTLAVAEKLGRKWIGADLG 418

Query: 255 QDYIDIATKRIASVQ 269
           +  I  + KR+  VQ
Sbjct: 419 RFAIHTSRKRMIGVQ 433



 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 72/197 (36%), Gaps = 35/197 (17%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVD----------LIFADPPYNLQLN--------GQLYRP 60
           W +K+I G++  V+  L    +           L++ DPP+++  +         + +  
Sbjct: 88  WANKLIWGDNKLVIASLKNGPLRRQIEDAGGLKLVYIDPPFDVGADFSFDIEVGDESFTK 147

Query: 61  DHSLVD--AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
             S+++  A  D+W   +  ++Y       L   R +L P+G+L+V   +     +  +L
Sbjct: 148 QPSVIEEVAYRDTWG--AGTQSYVHMLYERLCLIRDLLSPDGSLYVHVGWQVSGYVRVIL 205

Query: 119 QNLNFW--------ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
             +             N+I W+ ++   +           T+ + +       YT N   
Sbjct: 206 DEIFGKGGAPGLPGFRNEIAWKCTSAHSDSGRYGINWQ--TIFYYTKGGS---YTLNETY 260

Query: 171 LKAANEDVQMRSDWLIP 187
            +   + V     +  P
Sbjct: 261 QEYDQDYVDQYYRYKDP 277


>gi|71274520|ref|ZP_00650808.1| DNA methylase N-4/N-6 [Xylella fastidiosa Dixon]
 gi|71901747|ref|ZP_00683818.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
 gi|170730773|ref|YP_001776206.1| DNA methyltransferase [Xylella fastidiosa M12]
 gi|71164252|gb|EAO13966.1| DNA methylase N-4/N-6 [Xylella fastidiosa Dixon]
 gi|71728487|gb|EAO30647.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
 gi|167965566|gb|ACA12576.1| DNA methyltransferase [Xylella fastidiosa M12]
          Length = 380

 Score = 89.3 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 23/164 (14%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++ G++++VL+ LP + +D     PPY                +         + +  + 
Sbjct: 51  LLNGDALAVLKSLPNECIDFAMTSPPY------------WGKREYENGGIGLEADYRDFV 98

Query: 83  AFTRAWLLACRRVLKPNGTLW-VIGSYHN-------IFRIGTMLQNL-NFWILNDIVWRK 133
               A  L  +RVLKP G+ W  IG  +N        +R+   L ++  + + N +VW K
Sbjct: 99  KDLAAIFLELKRVLKPTGSFWLNIGDTYNGKGLVGIPWRVAFELTDVQGWTMRNSVVWNK 158

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
                +    R  N HE L      P  KGY +N DA+++   +
Sbjct: 159 LKGGMDNSKDRLANVHENLFHFVKQP--KGYYYNADAIRSKPRE 200



 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 39/85 (45%)

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
              +   P         +      H    P  L  R L+++  PG I+LDPF G+GT+  
Sbjct: 291 FHPNGSKPGDVWDIIPEDTQRRGAHFAPYPIDLCRRPLLATCPPGGIVLDPFCGTGTTLL 350

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKR 264
            A  L    +GI++ + Y++++ +R
Sbjct: 351 AAGNLGLKSVGIDISRHYLELSQER 375


>gi|207110827|ref|ZP_03244989.1| putative type III DNA modification enzyme (methyltransferase)
           [Helicobacter pylori HPKX_438_CA4C1]
          Length = 81

 Score = 89.3 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/71 (47%), Positives = 48/71 (67%), Gaps = 2/71 (2%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +   +  T KPEAL+SRIL  +T   D++LD F GSGT+ AVA K++R +IGIE + DYI
Sbjct: 9   NDSSVFDTPKPEALISRILEIATNENDLVLDFFAGSGTTCAVAHKMKRHYIGIE-QMDYI 67

Query: 259 D-IATKRIASV 268
           + I  +R+  V
Sbjct: 68  ETITKERLKKV 78


>gi|259505603|ref|ZP_05748505.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259166814|gb|EEW51368.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 363

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 64/148 (43%), Gaps = 17/148 (11%)

Query: 14  NSIFEWKDK---IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
            S  +W D+   +  G+S+ ++++LP  SV LI  DPPY         + ++ L D    
Sbjct: 16  KSAAKWADEEAIVTHGDSLQLMKRLPDNSVSLILTDPPY------HSTKKENILGDTAFG 69

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
             D F       A+        +RVL+PNGTL+V  S     R+   L    F  +  I 
Sbjct: 70  EDDDFI------AWMVECAKEWKRVLRPNGTLYVFCSSEMSARLEVNLAQF-FRPIGHIT 122

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPS 158
           W K N +P + G + +   E L    P 
Sbjct: 123 WSKPN-LPGYDGWKGKMKKEALRSWYPH 149



 Score = 82.7 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 8/95 (8%)

Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
             +       + DV+    W  P          K  +  HP +KP ALL  I+ +S+ PG
Sbjct: 240 YEDLVRPMFLSGDVEYTDVWDFPSV--------KQYKGKHPAEKPVALLRHIIAASSYPG 291

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           D++LD F GSG++   A    R  I +E++  +++
Sbjct: 292 DVVLDSFAGSGSTAVAAITEGRRAITMELEDKWVE 326


>gi|170783324|ref|YP_001711658.1| putative restriction-modification system methyltransferase
           [Clavibacter michiganensis subsp. sepedonicus]
 gi|169157894|emb|CAQ03103.1| putative restriction-modification system methyltransferase
           [Clavibacter michiganensis subsp. sepedonicus]
          Length = 391

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 61/316 (19%), Positives = 106/316 (33%), Gaps = 79/316 (25%)

Query: 23  IIKGNSISVLEKL---PA--KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD------- 70
           ++ G++ S L  L   P   +S+ L + DPPYN     + Y       + +++       
Sbjct: 51  LMVGDASSALRVLHADPERLESIKLCYLDPPYNTGETFRHYSDKRDSNEWISELRGHLTA 110

Query: 71  ----------SWDKFSSFEAYDA-------FTRAWL--------------LACRRVLKPN 99
                      W      E + A       F R                       +   
Sbjct: 111 LIPLLAPDASVWLHLDDSEQHRARVVMDEVFGREAFVSTIIWQKRKSRDNRKAFSSMHDY 170

Query: 100 GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN---PMPNFRGRRFQNAHETLIWAS 156
             ++ +    +  R+   L +   +   D   R      PM    G   QN   T++  S
Sbjct: 171 IHVYALSGPKSWKRVRHGLPDQGTFANPDNDPRGPWRSAPMSVQAGHATQNQFYTVVTPS 230

Query: 157 P----SPKAKGYTFNYDALKAANEDVQMRSDW-------------------LIPICSGSE 193
                 P  + +TF+   L+    D ++                          I +  E
Sbjct: 231 GARHDPPPGRCWTFSKMRLEELVRDGRVYWPRGGAGKPRLKRYESESGGLAPFTIWTADE 290

Query: 194 RLRNKDGEK----------LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
                  +K          +  T KPE LL RI+   + PGD +LD + GSGT+  VA++
Sbjct: 291 VGDTASAKKELLRDFPGGPVFDTPKPEKLLERIIKIGSDPGDTVLDYYLGSGTTAVVAQR 350

Query: 244 LRRSFIGIEMKQDYID 259
           L R++IG+E  +  ++
Sbjct: 351 LGRNWIGVEQNESVVE 366


>gi|157156016|ref|YP_001462382.1| DNA methylase [Escherichia coli E24377A]
 gi|157078046|gb|ABV17754.1| DNA methylase [Escherichia coli E24377A]
          Length = 349

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 17/131 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  ++ LP  SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINADCLKFIQTLPENSVDLIVTDPPYF---------------KVKPEGWDNQWEGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +        M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDTEIMMRE-RFNVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHET 151
             +    A+  
Sbjct: 115 CNKESLRAYFP 125



 Score = 76.2 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTHKPVQYYPGKHPCEKPAEMLQQIINASSRPGDLVADFFMGSGSTVKAAMALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  IG+E++    +   + +  +
Sbjct: 325 RCAIGVELETGRFEQTVREVQDL 347


>gi|238914011|ref|ZP_04657848.1| putative type III restriction/modification system modification
           methylase [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
          Length = 89

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           +G+E+++N  GEK     KPE L+   +  +T   DI+LD   GSGT+ AVA K+ R +I
Sbjct: 11  NGTEQMKNLFGEKAFKNPKPEELIQDFITITTNESDIVLDYHLGSGTTAAVAHKMNRQYI 70

Query: 250 GIEMKQDYID-IATKRIASV 268
           GIE + DYI+ +A +R+  V
Sbjct: 71  GIE-QMDYIETLAVERLKKV 89


>gi|268603870|ref|ZP_06138037.1| type III restriction/modification system modification methylase
           [Neisseria gonorrhoeae PID1]
 gi|268588001|gb|EEZ52677.1| type III restriction/modification system modification methylase
           [Neisseria gonorrhoeae PID1]
          Length = 618

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 27/212 (12%)

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT--LWVIGSYHN-IFRIGTM 117
            ++ V  +TD        +  + F   ++   +   +  G   +  I       +R G  
Sbjct: 292 KNNTVSTITDEEFSQIYNKDLEVFNDDFIQKLKEKYENLGYNFILPIADKQWGRWRWGYS 351

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
           ++N      + IV +  N +  ++ +R     E     +  PK   Y   Y +       
Sbjct: 352 IKNKARLQTDIIVSQSKNGISLYKKQRP----ELDDLPTKKPKTIFYKPEYSSG------ 401

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                       +G+E+++N  GEK     KPE L+   +  +T   DI+LD   GSGT+
Sbjct: 402 ------------NGTEQMKNLFGEKAFKNPKPEELIQDFITITTNENDIVLDYHLGSGTT 449

Query: 238 GAVAKKLRRSFIGIEMKQDYID-IATKRIASV 268
            AVA K+ R +IGIE + DYI+ +A +R+  V
Sbjct: 450 AAVAHKMNRQYIGIE-QMDYIETLAVERMKKV 480



 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 59/198 (29%), Gaps = 14/198 (7%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       V LI+ DPPY        Y       D+    ++    
Sbjct: 105 NLIIKGNNLIALHSLAKQFKGKVKLIYIDPPY--------YFVKKKPQDSFG--YNTNFK 154

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNP 136
              +  F +  LL  + +L  +G + +         +  +L  +  F      +    N 
Sbjct: 155 LSTWLTFMKNRLLIAKELLTDDGIIVISIDDDGNAYLKILLDEIFGFENFIGNLPTIMNL 214

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
             N     F   HE  +  + +     +           E  +          +      
Sbjct: 215 KGNNDEYAFAGTHEYTLVFAKNKDKSTFYEFPIDEDNFLEKWEEDEIGFYKKGAPMRATG 274

Query: 197 NKDGEKLHPTQKPEALLS 214
            +D  +  P      L+ 
Sbjct: 275 TEDKREDRPEMFYPFLVK 292


>gi|25028049|ref|NP_738103.1| hypothetical protein CE1493 [Corynebacterium efficiens YS-314]
 gi|23493333|dbj|BAC18303.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 370

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 64/148 (43%), Gaps = 17/148 (11%)

Query: 14  NSIFEWKDK---IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
            S  +W D+   +  G+S+ ++++LP  SV LI  DPPY         + ++ L D    
Sbjct: 23  KSAAKWADEEAIVTHGDSLQLMKRLPDNSVSLILTDPPY------HSTKKENILGDTAFG 76

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
             D F       A+        +RVL+PNGTL+V  S     R+   L    F  +  I 
Sbjct: 77  EDDDFI------AWMVECAKEWKRVLRPNGTLYVFCSSEMSARLEVNLAQF-FRPIGHIT 129

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPS 158
           W K N +P + G + +   E L    P 
Sbjct: 130 WSKPN-LPGYDGWKGKMKKEALRSWYPH 156



 Score = 82.7 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 8/95 (8%)

Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
             +       + DV+    W  P          K  +  HP +KP ALL  I+ +S+ PG
Sbjct: 247 YEDLVRPMFLSGDVEYTDVWDFPSV--------KQYKGKHPAEKPVALLRHIIAASSYPG 298

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           D++LD F GSG++   A    R  I +E++  +++
Sbjct: 299 DVVLDSFAGSGSTAVAAITEGRRAITMELEDKWVE 333


>gi|284050607|ref|ZP_06380817.1| DNA methylase N-4/N-6 domain protein [Arthrospira platensis str.
           Paraca]
          Length = 438

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 54/325 (16%), Positives = 104/325 (32%), Gaps = 72/325 (22%)

Query: 22  KIIKGNSISVLEKLPAK-----SVDLIFADPP---------------YNLQLNGQLY--- 58
           ++  G+++ VL  L  +     S++LI+ DPP               Y+  L G ++   
Sbjct: 49  RLYFGDNLDVLRLLATEPEICGSINLIYIDPPFATESHFLSRKQSKAYDDTLTGAVFVEF 108

Query: 59  --------------------RPDHSLVDAVTDSWDKFSSFEAYDAFT-------RAWLLA 91
                                 D  ++  +    D+    E Y           + +   
Sbjct: 109 LRERLIWLHQLLSNHGSIYLHLDEKMIFHIKLIMDEVFGAENYRNMIVRKKCNPKNYTRR 168

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF----------- 140
                      +     +   +    L   +      I                      
Sbjct: 169 TYGKTADFILFYTKSDTYIWNQPKVPLSENSKKEYQYIEPETGRKFMKVPLHAPGVRHGE 228

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS-------- 192
            G+ ++            P       +       +++   R    +   SG         
Sbjct: 229 TGKPWRGKMPPPGKHWQYPPKTLDEMDARGEIFWSKNGNPRRKVYLNEHSGVGVQDIWLE 288

Query: 193 ERLRNKDGEKL--HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
            R       K+  +PT+K   LL RI+ +S+ PGD+ILD F GSGTS A+A +++R++IG
Sbjct: 289 FRDAYNQNVKITGYPTEKNPDLLRRIIAASSNPGDLILDCFAGSGTSLAIADEMQRNWIG 348

Query: 251 IEMKQDYIDIATKRIAS-VQPLGNI 274
           ++   +       R    ++P+G+ 
Sbjct: 349 VDHSIEAFKTILNRFEHGIKPMGDF 373


>gi|320159539|ref|YP_004172763.1| putative methyltransferase [Anaerolinea thermophila UNI-1]
 gi|319993392|dbj|BAJ62163.1| putative methyltransferase [Anaerolinea thermophila UNI-1]
          Length = 307

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 59/127 (46%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
           ++ +        T +      +    +      + +   +   R+   + +HP   P +L
Sbjct: 20  LYRTKLSIGYTRTCSCPPNHLSCLSAKEWIKCQLGVWQFNYEGRDIRDKSIHPATFPISL 79

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
             +++   T  G+++LDPF GSGT+   A+ L R+ +G ++++ YID+  +R+A+     
Sbjct: 80  SKKVISLFTHEGELVLDPFVGSGTTLVAARDLNRNAVGFDLQEKYIDLCAERLATNNLFN 139

Query: 273 NIELTVL 279
           N +   +
Sbjct: 140 NAQQVAI 146



 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 56/159 (35%), Gaps = 19/159 (11%)

Query: 13  QNSIFEWKDKI-IKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTD 70
            N++F    ++ I  ++ ++   L  + V LI+  PPY NL    +L +      +    
Sbjct: 134 TNNLFNNAQQVAIHDDARNIPNYLEPEMVSLIWTSPPYANLLNRKRLNKSRRDRKNEQFG 193

Query: 71  SWDKFS---------SFEAYDAFTRAWLLACRRVLKPNGTL--------WVIGSYHNIFR 113
             +++S           E Y             +LKP G          W          
Sbjct: 194 KIEQYSQDPSDLGTMPLEEYTRAMGEIFEKLLPLLKPRGHCVINVPDMWWEDKRITIHVS 253

Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL 152
           +   L+   + + N I+W ++N +       + + + T+
Sbjct: 254 LIEELRQRGYELRNIIIWDRTNIVNKIGIFGWPSNYITM 292


>gi|239999121|ref|ZP_04719045.1| putative type III restriction/modification system modification
           methylase [Neisseria gonorrhoeae 35/02]
 gi|268594957|ref|ZP_06129124.1| hypothetical protein NGBG_01248 [Neisseria gonorrhoeae 35/02]
 gi|268548346|gb|EEZ43764.1| hypothetical protein NGBG_01248 [Neisseria gonorrhoeae 35/02]
          Length = 736

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 27/212 (12%)

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT--LWVIGSYHN-IFRIGTM 117
            ++ V  +TD        +  + F   ++   +   +  G   +  I       +R G  
Sbjct: 410 KNNTVSTITDEEFSQIYNKDLEVFNDDFIQKLKEKYENLGYNFILPIADKQWGRWRWGYS 469

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
           ++N      + IV +  N +  ++ +R     E     +  PK   Y   Y +       
Sbjct: 470 IKNKARLQTDIIVSQSKNGISLYKKQRP----ELDDLPTKKPKTIFYKPEYSSG------ 519

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                       +G+E+++N  GEK     KPE L+   +  +T   DI+LD   GSGT+
Sbjct: 520 ------------NGTEQMKNLFGEKAFKNPKPEELIQDFITITTNENDIVLDYHLGSGTT 567

Query: 238 GAVAKKLRRSFIGIEMKQDYID-IATKRIASV 268
            AVA K+ R +IGIE + DYI+ +A +R+  V
Sbjct: 568 AAVAHKMNRQYIGIE-QMDYIETLAVERMKKV 598



 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 59/198 (29%), Gaps = 14/198 (7%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       V LI+ DPPY        Y       D+    ++    
Sbjct: 223 NLIIKGNNLIALHSLAKQFKGKVKLIYIDPPY--------YFVKKKPQDSFG--YNTNFK 272

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNP 136
              +  F +  LL  + +L  +G + +         +  +L  +  F      +    N 
Sbjct: 273 LSTWLTFMKNRLLIAKELLTDDGIIVISIDDDGNAYLKILLDEIFGFENFIGNLPTIMNL 332

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
             N     F   HE  +  + +     +           E  +          +      
Sbjct: 333 KGNNDEYAFAGTHEYTLVFAKNKDKSTFYEFPIDEDNFLEKWEEDEIGFYKKGAPMRATG 392

Query: 197 NKDGEKLHPTQKPEALLS 214
            +D  +  P      L+ 
Sbjct: 393 TEDKREDRPEMFYPFLVK 410


>gi|188990456|ref|YP_001902466.1| restriction-modification system DNA-methyltransferase [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167732216|emb|CAP50408.1| restriction-modification system DNA-methyltransferase [Xanthomonas
           campestris pv. campestris]
          Length = 505

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 70/320 (21%), Positives = 102/320 (31%), Gaps = 23/320 (7%)

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
           H  +    +  D F        FT       R V K  G  W              +  +
Sbjct: 156 HDYILVYANDPDAFKKARNRVPFTEEQAKVYRNVDKATGRRWRPIPMTAQGYRANQMYEI 215

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT--FNYDALKAANEDVQ 179
                      +            +   E  I+      ++     F   +         
Sbjct: 216 EAPGGAIHTPPEGRCWSTIEPEYLKMKAEGRIYFGKDNNSQPNIIRFLDQSEGVVPWTWW 275

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
              +      +  E+ +         T KPE LL RI+  +T PGDI+LD F GSGT+ A
Sbjct: 276 PSEEVGHTDEAAKEQHQLMGKGDTFATPKPERLLKRIIEIATDPGDIVLDSFLGSGTTAA 335

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASV---QPLGNIELTVLTGKR--TEPRVAFNLLV 294
           VA K+RR +IGIEM          R+  V   +  G  E     G       ++   +  
Sbjct: 336 VAHKMRRRWIGIEMGSHARSHCQLRLQKVVDGEKGGISEAVKWEGGDGFRFFKLGVPVFD 395

Query: 295 ERGLIQPGQILTNAQGNISATV--CADGTLIS-----GTELGSIHRVG-----AKVSGSE 342
           E G I+ G        +++A V     GT  S        LG  H VG       + G E
Sbjct: 396 ESGHIREGIKF----EHLAAHVWFAETGTARSTRAAKQPFLGEYHEVGYYLLFNGILGDE 451

Query: 343 TCNGWNFWYFEKLGELHSIN 362
           +  G N      L  L   +
Sbjct: 452 SKTGGNVLTKRVLKGLQPFD 471



 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 53/169 (31%), Gaps = 17/169 (10%)

Query: 18  EWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           +  + +I+G+++  L+ L    +  V  IF DPPYN +              +  + +D 
Sbjct: 36  DSPNMLIEGDNLDALKALLPYYSGQVKCIFIDPPYNTK--------------SAFEQYDD 81

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
                 + +     L   R  L  +G++W+    +    +  ++  +             
Sbjct: 82  NVEHAKWLSMMYPRLELLREFLSKSGSIWITIDDNEGHYLKVIMDEIFGRKNFVATCIWQ 141

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
                       + H+ ++  +  P A     N          V    D
Sbjct: 142 KRYSRENREAIGDVHDYILVYANDPDAFKKARNRVPFTEEQAKVYRNVD 190


>gi|323467534|gb|ADX71220.1| DNA methyltransferase [Lactobacillus helveticus H10]
          Length = 341

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 70/163 (42%), Gaps = 20/163 (12%)

Query: 1   MSQKNSLAIN--ENQNSIFEWKDK----IIKGNSISVLEKLPAKSVDLIFADPPYNLQLN 54
           M   N +  N   N N+   ++ +    I++G+S+ +++K+P+ S+ LI  DPPY+    
Sbjct: 1   MMNTNKVYNNILSNFNTDTLYRPQKDAAIVEGDSLELMKKIPSHSISLILTDPPYHSTNK 60

Query: 55  GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI 114
             +                KF   E +  +   +    +R+LK NG+++   S    +++
Sbjct: 61  KNITGDT------------KFKKDEDFLDWMEQFAKEWKRILKFNGSIYCFCSSQMEYQL 108

Query: 115 GTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
                   F IL+ I W K N  P F G R +   E L    P
Sbjct: 109 INRFSKD-FNILSTITWTKPNK-PGFDGWRKKMKKENLRQWYP 149



 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 41/87 (47%)

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           D  +      +    +     HP +KP  LL   + +S+   DI+LD F GSG++   A 
Sbjct: 250 DGTMQYTDIWDFETVRQYRGKHPAEKPIDLLENAIKASSYVNDIVLDTFSGSGSTAEAAL 309

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQ 269
            L R  I +E++  ++  +  R+ S Q
Sbjct: 310 SLGRKSISMEIEDKWVQASVDRLKSTQ 336


>gi|227821729|ref|YP_002825699.1| modification methylase EcaI [Sinorhizobium fredii NGR234]
 gi|227340728|gb|ACP24946.1| modification methylase EcaI [Sinorhizobium fredii NGR234]
          Length = 568

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/100 (36%), Positives = 59/100 (59%), Gaps = 3/100 (3%)

Query: 187 PICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
            + S    L ++  E+L +PTQKP  LL R++ + T  GD++LDPF G GT+ A A+K +
Sbjct: 281 DVWSDIPPLNSQARERLGYPTQKPVRLLDRLIKAMTDEGDVVLDPFCGCGTTVAAAQKSQ 340

Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           R +IGI++    I +  +R+A++  +G  E T+    R  
Sbjct: 341 RHWIGIDVAYHAIKVIEERLAAL--MGGTEYTLGGIPRDF 378



 Score = 69.2 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 67/173 (38%), Gaps = 40/173 (23%)

Query: 20  KDKIIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQL------YRPDHSLVDAVTDSW 72
            +++  G+++++L + +  +SVDL++ DPP+N   N  +           + V+A  D+W
Sbjct: 1   MNQLWFGDNLTILREEIATESVDLVYLDPPFNSNANYNVLFRTPADEAASAQVEAFRDTW 60

Query: 73  ----------DKF--------------------SSFEAYDAFTRAWLLACRRVLKPNGTL 102
                     D+                     S   AY       L   RRVLKP G+L
Sbjct: 61  TWGAEAQWAFDEIMRAGGSIAAIVNALHSALGESDMMAYLVMMAQRLHELRRVLKPTGSL 120

Query: 103 WVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
            +         +  +L  +       N+I+W+++        RR    H+ ++
Sbjct: 121 LLHCDPTASHYLKIILDAIFGPERFSNEIIWKRTMGKG-LMTRRLPTNHDVIL 172


>gi|160894867|ref|ZP_02075641.1| hypothetical protein CLOL250_02417 [Clostridium sp. L2-50]
 gi|156863298|gb|EDO56729.1| hypothetical protein CLOL250_02417 [Clostridium sp. L2-50]
          Length = 506

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 60/126 (47%)

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
            R  + +      + +   +  TF  +    +      + + +       + ++  + E 
Sbjct: 239 DRLVSDNRIWFGINGNNVPRKKTFLSEVKSGSVPMTIWKYEDVGSTQDAKKEVKQINPED 298

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
              T KPE L+ RIL  +TKPGDIILD F GSGT+ AVA K+ R +IG+E+ +   +   
Sbjct: 299 PFATPKPEKLIERILEIATKPGDIILDSFLGSGTTIAVAHKMNRRWIGVEIGEQAYNQCK 358

Query: 263 KRIASV 268
            R+  V
Sbjct: 359 LRLDKV 364



 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 63/197 (31%), Gaps = 18/197 (9%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
            + ++ +I G+++  L+ L  K    V  I+ DPPYN                +    +D
Sbjct: 36  PDTENMLIHGDNLLALKALENKFRGRVKCIYIDPPYNTG--------------SAFAQYD 81

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND-IVWR 132
                  + +  R  LL  + +L  +GT+W+         +  +   +         V  
Sbjct: 82  DNLEHSIWLSMIRKRLLILKELLSEDGTIWISIDDDEQAYLKVLCDEIFMRSNFVSNVIW 141

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           +    P    +   ++H+ ++  + +                +      +D   P  S  
Sbjct: 142 EKKFSPQNDAKWLSDSHDFILVYAKNKNLWKPNLLPRTAGMNSRYKNPDNDPRGPWTSSD 201

Query: 193 ERLRNKDGEKLHPTQKP 209
              R   G   +P   P
Sbjct: 202 FTARTYSGNTDYPITTP 218


>gi|330908667|gb|EGH37181.1| DNA modification methylase [Escherichia coli AA86]
          Length = 350

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 17/130 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAY 81
           +I  + +  ++ LP  S+DLI  DPPY                    + WD ++   E Y
Sbjct: 12  LINADCLHFIQSLPDDSIDLIVTDPPYF---------------KVKPNGWDNQWKGDEDY 56

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N  
Sbjct: 57  LKWLDHCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAKPSGRWNGC 115

Query: 142 GRRFQNAHET 151
            +    A+  
Sbjct: 116 NKESLRAYFP 125



 Score = 77.3 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 44/83 (53%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTHKPVQFYPGKHPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  +G+E++ D  +   K ++ +
Sbjct: 325 RRALGVELESDRFNQTVKEVSEL 347


>gi|15676625|ref|NP_273769.1| N-6 adenine-specific DNA methylase [Neisseria meningitidis MC58]
 gi|7225954|gb|AAF41140.1| N-6 adenine-specific DNA methylase [Neisseria meningitidis MC58]
 gi|308388917|gb|ADO31237.1| N-6 adenine-specific DNA methylase HgaI [Neisseria meningitidis
           alpha710]
 gi|325127849|gb|EGC50756.1| hypothetical protein NMXN1568_1412 [Neisseria meningitidis N1568]
 gi|325129890|gb|EGC52693.1| putative DNA methylase [Neisseria meningitidis OX99.30304]
 gi|325133758|gb|EGC56414.1| putative DNA methylase [Neisseria meningitidis M13399]
 gi|325136049|gb|EGC58659.1| putative DNA methylase [Neisseria meningitidis M0579]
 gi|325140117|gb|EGC62646.1| putative DNA methylase [Neisseria meningitidis CU385]
 gi|325144069|gb|EGC66377.1| putative DNA methylase [Neisseria meningitidis M01-240013]
 gi|325200588|gb|ADY96043.1| putative DNA methylase [Neisseria meningitidis H44/76]
 gi|325202476|gb|ADY97930.1| putative DNA methylase [Neisseria meningitidis M01-240149]
 gi|325206430|gb|ADZ01883.1| putative DNA methylase [Neisseria meningitidis M04-240196]
 gi|325207772|gb|ADZ03224.1| putative DNA methylase [Neisseria meningitidis NZ-05/33]
          Length = 216

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/255 (21%), Positives = 80/255 (31%), Gaps = 50/255 (19%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            I   +++ ++ + P K  DL   DPPY + LN      D+         WD       +
Sbjct: 3   TISNEDNMILMSRYPDKYFDLAIVDPPYGI-LNKTKRGGDYKFNMNEYSQWDIKPDQTYF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           +   R             G LW+   Y+  F                             
Sbjct: 62  NELFRVSKNQIIWGGNYFGELWLRSEYNKGF----------------------------- 92

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
                     +IW    P+    T N  ++    E      D    I   S R   K+  
Sbjct: 93  ----------IIWDKNQPE----TLNNFSMA---EMAWSSFDRPSKIFRFSVR---KNRN 132

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K HPTQKP  L   +L    K GD ILD   GSGT        +      E+  DY   +
Sbjct: 133 KTHPTQKPVELYQWLLKMYAKQGDKILDTHLGSGTLAIACCIAQFDLTACEINSDYYQQS 192

Query: 262 TKRIASVQPLGNIEL 276
            ++I +  P   I  
Sbjct: 193 IEKIKNNLPEARISF 207


>gi|268684491|ref|ZP_06151353.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268624775|gb|EEZ57175.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
          Length = 610

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 27/212 (12%)

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT--LWVIGSYHN-IFRIGTM 117
            ++ V  +TD        +  + F   ++   +   +  G   +  I       +R G  
Sbjct: 284 KNNTVSTITDEEFSQIYNKDLEVFNDDFIQKLKEKYENLGYNFILPIADKQWGRWRWGYS 343

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
           ++N      + IV +  N +  ++ +R     E     +  PK   Y   Y +       
Sbjct: 344 IKNKARLQTDIIVSQSKNGISLYKKQRP----ELDDLPTKKPKTIFYKPEYSSG------ 393

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                       +G+E+++N  GEK     KPE L+   +  +T   DI+LD   GSGT+
Sbjct: 394 ------------NGTEQMKNLFGEKAFKNPKPEELIQDFITITTNENDIVLDYHLGSGTT 441

Query: 238 GAVAKKLRRSFIGIEMKQDYID-IATKRIASV 268
            AVA K+ R +IGIE + DYI+ +A +R+  V
Sbjct: 442 AAVAHKMNRQYIGIE-QMDYIETLAVERMKKV 472



 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 59/198 (29%), Gaps = 14/198 (7%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  +  L       V LI+ DPPY        Y       D+    ++    
Sbjct: 97  NLIIKGNNLIAMHSLAKQFKGKVKLIYIDPPY--------YFVKKKPQDSFG--YNTNFK 146

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNP 136
              +  F +  LL  + +L  +G + +         +  +L  +  F      +    N 
Sbjct: 147 LSTWLTFMKNRLLIAKELLTDDGIIVISIDDDGNAYLKILLDEIFGFENFIGNLPTIMNL 206

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
             N     F   HE  +  + +     +           E  +          +      
Sbjct: 207 KGNNDEYAFAGTHEYTLVFAKNKDKSTFYEFPIDEDNFLEKWEEDEIGFYKKGAPMRATG 266

Query: 197 NKDGEKLHPTQKPEALLS 214
            +D  +  P      L+ 
Sbjct: 267 TEDKREDRPEMFYPFLVK 284


>gi|311741950|ref|ZP_07715760.1| DNA methylase N-4/N-6 [Aeromicrobium marinum DSM 15272]
 gi|311314443|gb|EFQ84350.1| DNA methylase N-4/N-6 [Aeromicrobium marinum DSM 15272]
          Length = 434

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 79/234 (33%), Gaps = 48/234 (20%)

Query: 34  KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
            +P  +V L+  DPPY             S  D     +   + F               
Sbjct: 233 TIPPGAVSLVLTDPPY-------------SGADVQAGIYRDLAEF-------------AG 266

Query: 94  RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           RVL P G L        + ++ T L           V          R R   +A+ +++
Sbjct: 267 RVLAPGGWLVAYSPTMFLPQVLTDLSTSGLTYWWQYVIVFPQHPVQQRTRALASAYRSVV 326

Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL 213
                       F  D L  A                       +  +  HP Q+     
Sbjct: 327 VFRQPGDTSLPAFTVDVLPGA----------------------GRAKDTSHPWQQAAGET 364

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
             ++ + T+PGD ++DPF G+G+ G  A  L R FIG ++   ++D+A  R+A 
Sbjct: 365 RPLIEALTEPGDFVVDPFCGTGSFGLDATGLGRRFIGADIDAGHVDLARSRLAD 418


>gi|323965397|gb|EGB60853.1| DNA methylase [Escherichia coli M863]
 gi|327250326|gb|EGE62045.1| DNA methylase family protein [Escherichia coli STEC_7v]
          Length = 352

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 17/130 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAY 81
           +I  + +  ++ LP  S+DLI  DPPY                    + WD ++   E Y
Sbjct: 12  LINADCLHFIQSLPDDSIDLIVTDPPYF---------------KVKPNGWDNQWKGDEDY 56

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N  
Sbjct: 57  LKWLDHCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAKPSGRWNGC 115

Query: 142 GRRFQNAHET 151
            +    A+  
Sbjct: 116 NKESLRAYFP 125



 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 43/83 (51%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   +  L 
Sbjct: 265 VPYTDVWMHKPVQYYPGKHPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKASMALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  IG+E++ +  +   K +  +
Sbjct: 325 RRAIGVELETERFEQTVKEVQDL 347


>gi|323161362|gb|EFZ47269.1| DNA methylase family protein [Escherichia coli E128010]
          Length = 350

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 17/130 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAY 81
           +I  + +  ++ LP  S+DLI  DPPY                    + WD ++   E Y
Sbjct: 12  LINADCLHFIQSLPDDSIDLIVTDPPYF---------------KVKPNGWDNQWKGDEDY 56

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N  
Sbjct: 57  LKWLDHCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAKPSGRWNGC 115

Query: 142 GRRFQNAHET 151
            +    A+  
Sbjct: 116 NKESLRAYFP 125



 Score = 77.3 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 44/83 (53%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTHKPVQFYPGKHPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  +G+E++ +  +   K ++ +
Sbjct: 325 RRALGVELESERFNQTVKEVSEL 347


>gi|19549035|ref|NP_599080.1| hypothetical protein SfVp48 [Enterobacteria phage SfV]
 gi|19483779|gb|AAL89450.1| unknown [Enterobacteria phage SfV]
          Length = 350

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 17/130 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAY 81
           +I  + +  ++ LP  S+DLI  DPPY                    + WD ++   E Y
Sbjct: 12  LINADCLHFIQSLPDDSIDLIVTDPPYF---------------KVKPNGWDNQWKGDEDY 56

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N  
Sbjct: 57  LKWLDHCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAKPSGRWNGC 115

Query: 142 GRRFQNAHET 151
            +    A+  
Sbjct: 116 NKESLRAYFP 125



 Score = 76.2 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 44/83 (53%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTHKPVQFYPGKHPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  +G+E++ +  +   K ++ +
Sbjct: 325 RQALGVELESERFNQMVKEVSEL 347


>gi|291566458|dbj|BAI88730.1| methyltransferase [Arthrospira platensis NIES-39]
          Length = 382

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 60/154 (38%), Gaps = 24/154 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++ G+ + V+++LP+ S D     PPY                DA    W+    F+ Y 
Sbjct: 54  LLLGDVLEVMKELPSDSFDCCMTSPPY----------WGKREYDAGGIGWE--PDFKTYV 101

Query: 83  AFTRAWLLACRRVLKPNGTLW-VIGSYHNI-------FRIGTML-QNLNFWILNDIVWRK 133
               +      RVLK  G+ W  IG  +         +RI   L  N  + + N ++W K
Sbjct: 102 DNLCSVFSEVHRVLKKTGSFWLNIGDSYYHKNLLGLPWRIALNLTDNQGWILRNSVIWNK 161

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
               P+    R +N HE L     SP    Y ++
Sbjct: 162 VKGGPDHSKDRLRNIHENLFHFVKSP---KYYYD 192



 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 11/122 (9%)

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R   +  E +   +   K KG+ F         +  +    W I      +R       +
Sbjct: 267 RTTHSDSEKVSGRAKELKEKGFYFLKYHP----KGSKPSDVWEILPEDTQKR-------E 315

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           LH    P  L    + S+  P  II+DPF G+GT+  VA+ L R   GI++   Y++IA 
Sbjct: 316 LHFAPYPVDLCKIPISSTCPPNGIIIDPFCGTGTTMLVAQLLGRKSCGIDISHHYLEIAK 375

Query: 263 KR 264
            R
Sbjct: 376 AR 377


>gi|156744102|ref|YP_001434231.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156235430|gb|ABU60213.1| DNA methylase N-4/N-6 domain protein [Roseiflexus castenholzii DSM
           13941]
          Length = 370

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 61/150 (40%), Gaps = 13/150 (8%)

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRG--RRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
            L+ LN  + +    + S+     RG  R   +  E +   +   K KG+ F       +
Sbjct: 227 ALRELNKMLEDVAAGKISDFRMIIRGQQRATHSDRERVSGRARELKEKGFYFLRYHPHGS 286

Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
                    W I       R        +H    P  L    ++S+     ++LDPF G+
Sbjct: 287 KPGD----VWDILPEDTQRR-------DVHFAPYPVDLCRIPILSTCPEYGVVLDPFCGT 335

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           GT+   A+ L R  IGI++ Q Y++IA +R
Sbjct: 336 GTTLLAARDLGRRSIGIDISQSYLEIALQR 365



 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 64/161 (39%), Gaps = 24/161 (14%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++ G++ +VLE+LP  S+D++   PPY                +              Y 
Sbjct: 42  LLLGDAQTVLEQLPEASIDMVMTSPPY------------WGKREYDDGGIGMEDDHREYI 89

Query: 83  AFTRAWLLACRRVLKPNGTLWVI--GSYHNI------FRIGTML-QNLNFWILNDIVWRK 133
                     +RVLKP G+ W+    +YH++      +R+   L  +  + + N ++W K
Sbjct: 90  RHLTQICSLIKRVLKPEGSFWLNLGDTYHHMHLLGIPWRVALALTDHQGWILRNSVIWNK 149

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
                +    R  N HE L      P    Y +N DA+++ 
Sbjct: 150 VKSGMDTAKNRLGNVHEYLFHFVKQP---KYYYNVDAIRSK 187


>gi|157149549|ref|YP_001451567.1| putative DNA methylase [Escherichia coli E24377A]
 gi|157076716|gb|ABV16425.1| putative DNA methylase [Escherichia coli E24377A]
          Length = 261

 Score = 88.5 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 16/129 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  +     ++ + R  +  +N  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 141 RGRRFQNAH 149
            G R + A+
Sbjct: 108 VGYRHECAY 116


>gi|194426854|ref|ZP_03059407.1| DNA methylase [Escherichia coli B171]
 gi|194415190|gb|EDX31459.1| DNA methylase [Escherichia coli B171]
          Length = 350

 Score = 88.5 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 17/130 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAY 81
           +I  + +  ++ LP  S+DLI  DPPY                    + WD ++   E Y
Sbjct: 12  LINADCLHFIQSLPDDSIDLIVTDPPYF---------------KVKPNGWDNQWKGDEDY 56

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N  
Sbjct: 57  LKWLDHCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAKPSGRWNGC 115

Query: 142 GRRFQNAHET 151
            +    A+  
Sbjct: 116 NKESLRAYFP 125



 Score = 77.3 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 44/83 (53%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTHKPVQFYPGKHPCEKPADMLRQIINASSRPGDMVADFFMGSGSTIKAAMALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  +G+E++ +  +   K ++ +
Sbjct: 325 RRALGVELESERFNQTVKEVSEL 347


>gi|283954854|ref|ZP_06372370.1| site-specific DNA-methyltransferase [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283793694|gb|EFC32447.1| site-specific DNA-methyltransferase [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 181

 Score = 88.5 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 23/165 (13%)

Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF---QNAHETLIWASPS 158
           + V  S+     +  + +   F    ++V++K +     +          +  +++    
Sbjct: 25  MIVFCSFEQQTILIEVAKKYGFNHYINLVFKKPSSSQVLKANMKIVGNCEYALILYRDKL 84

Query: 159 PKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILV 218
           P      FN D     N       DW           +++   K+HPTQKP  LL R+++
Sbjct: 85  P-----KFNNDGKMIYN-----CMDWQ----------KDEGIPKVHPTQKPVKLLERLII 124

Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
             T  GD+++DP  GSG++   A  L R   G E+K+++ D A K
Sbjct: 125 IFTDVGDVVIDPCAGSGSALLAATNLNRKAYGFEIKKEFFDGANK 169


>gi|320174956|gb|EFW50072.1| putative DNA methylase [Shigella dysenteriae CDC 74-1112]
          Length = 352

 Score = 88.5 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 17/131 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  +  LP  SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINADCLEFIWSLPENSVDLIVTDPPYF---------------KVKPEGWDNQWKGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHET 151
             +    A+  
Sbjct: 115 CNKESLRAYFP 125



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 41/83 (49%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F  SG++   A  L 
Sbjct: 265 VPYTDVWTHKPVQFYPGKHPCEKPAEMLQQIISASSRPGDLVADFFMDSGSTVKAALALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  IG+E++    +   + +  +
Sbjct: 325 RRAIGVELETGRFEQTVREVQDL 347


>gi|91214055|ref|YP_544041.1| hypothetical protein UTI89_C5110 [Escherichia coli UTI89]
 gi|91075629|gb|ABE10510.1| hypothetical protein UTI89_C5110 [Escherichia coli UTI89]
          Length = 350

 Score = 88.5 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 17/130 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAY 81
           +I  + +  ++ LP  S+DLI  DPPY                    + WD ++   E Y
Sbjct: 12  LINADCLHFIQSLPDDSIDLIVTDPPYF---------------KVKPNGWDNQWKGDEDY 56

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N  
Sbjct: 57  LKWLDHCLAQFWRVLKPAGSLYLFCGHRLASDIEVMMRE-RFNVLNHIIWAKPSGRWNGC 115

Query: 142 GRRFQNAHET 151
            +    A+  
Sbjct: 116 NKESLRAYFP 125



 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 43/83 (51%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWMHKPVQFYPGKHPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  +G+E++ +  +   K I  +
Sbjct: 325 RRALGVELESERFNQTVKEINEL 347


>gi|240123702|ref|ZP_04736658.1| putative type III restriction/modification system modification
           methylase [Neisseria gonorrhoeae PID332]
 gi|268682334|ref|ZP_06149196.1| type III restriction/modification system modification methylase
           [Neisseria gonorrhoeae PID332]
 gi|268622618|gb|EEZ55018.1| type III restriction/modification system modification methylase
           [Neisseria gonorrhoeae PID332]
          Length = 724

 Score = 88.5 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 27/212 (12%)

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT--LWVIGSYHN-IFRIGTM 117
            ++ V  +TD        +  + F   ++   +   +  G   +  I       +R G  
Sbjct: 398 KNNTVSTITDEEFSQIYNKDLEVFNDDFIQKLKEKYENLGYNFILPIADKQWGRWRWGYS 457

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
           ++N      + IV +  N +  ++ +R     E     +  PK   Y   Y +       
Sbjct: 458 IKNKARLQTDIIVSQSKNGISLYKKQRP----ELDDLPTKKPKTIFYKPEYSSG------ 507

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                       +G+E+++N  GEK     KPE L+   +  +T   DI+LD   GSGT+
Sbjct: 508 ------------NGTEQMKNLFGEKAFKNPKPEELIQDFITITTNENDIVLDYHLGSGTT 555

Query: 238 GAVAKKLRRSFIGIEMKQDYID-IATKRIASV 268
            AVA K+ R +IGIE + DYI+ +A +R+  V
Sbjct: 556 AAVAHKMNRQYIGIE-QMDYIETLAVERMKKV 586



 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 59/198 (29%), Gaps = 14/198 (7%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       V LI+ DPPY        Y       D+    ++    
Sbjct: 211 NLIIKGNNLIALHSLAKQFKGKVKLIYIDPPY--------YFVKKKPQDSFG--YNTNFK 260

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNP 136
              +  F +  LL  + +L  +G + +         +  +L  +  F      +    N 
Sbjct: 261 LSTWLTFMKNRLLIAKELLTDDGIIVISIDDDGNAYLKILLDEIFGFENFIGNLPTIMNL 320

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
             N     F   HE  +  + +     +           E  +          +      
Sbjct: 321 KGNNDEYAFAGTHEYTLVFAKNKDKSTFYEFPIDEDNFLEKWEEDEIGFYKKGAPMRATG 380

Query: 197 NKDGEKLHPTQKPEALLS 214
            +D  +  P      L+ 
Sbjct: 381 TEDKREDRPEMFYPFLVK 398


>gi|284053520|ref|ZP_06383730.1| DNA methylase N-4/N-6 domain protein [Arthrospira platensis str.
           Paraca]
 gi|78773884|gb|ABB51231.1| methyltransferase [Arthrospira platensis]
          Length = 375

 Score = 88.5 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 60/154 (38%), Gaps = 24/154 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++ G+ + V+++LP+ S D     PPY                DA    W+    F+ Y 
Sbjct: 47  LLLGDVLEVMKELPSDSFDCCMTSPPY----------WGKREYDAGGIGWE--PDFKTYV 94

Query: 83  AFTRAWLLACRRVLKPNGTLW-VIGSYHNI-------FRIGTML-QNLNFWILNDIVWRK 133
               +      RVLK  G+ W  IG  +         +RI   L  N  + + N ++W K
Sbjct: 95  DNLCSVFSEVHRVLKKTGSFWLNIGDSYYHKNLLGLPWRIALNLTDNQGWILRNSVIWNK 154

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
               P+    R +N HE L     SP    Y ++
Sbjct: 155 VKGGPDHSKDRLRNIHENLFHFVKSP---KYYYD 185



 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 11/122 (9%)

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R   +  E +   +   K KG+ F         +  +    W I      +R       +
Sbjct: 260 RTTHSDSEKVSGRAKELKEKGFYFLKYHP----KGSKPSDVWEILPEDTQKR-------E 308

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           LH    P  L    + S+  P  II+DPF G+GT+  VA+ L R   GI++   Y++IA 
Sbjct: 309 LHFAPYPVDLCKIPISSTCPPNGIIIDPFCGTGTTMLVAQLLGRKSCGIDISHHYLEIAK 368

Query: 263 KR 264
            R
Sbjct: 369 AR 370


>gi|94311602|ref|YP_584812.1| DNA methylase N-4/N-6 [Cupriavidus metallidurans CH34]
 gi|93355454|gb|ABF09543.1| putative DNA methylase N-4/N-6 [Cupriavidus metallidurans CH34]
          Length = 388

 Score = 88.5 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 76/208 (36%), Gaps = 34/208 (16%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
              ++  +   +P  SVDLI   PPY  + +                   + S+  AY A
Sbjct: 22  YHSDARHI--PVPDASVDLIVTSPPYWKKRDY-----------GFDGQIGQESTPAAYVA 68

Query: 84  FTRAWLLACRRVLKPNGTLW-VIGSYHN-------IFRIGTMLQNLNFWILNDIVWRKSN 135
                +   RRVLKP+G+++  +G  +          R+     +  + + N I+W K +
Sbjct: 69  NMIECMREWRRVLKPSGSIFLNVGDSYMARTLAGVPGRLEAAAIDDGWLVRNRIIWAKES 128

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD-WLIPICSGSER 194
            MP     R  N HE +I       +  Y ++      AN +     D W IP+      
Sbjct: 129 GMPEPAKNRLANRHEYIIHFV---SSAKYFYDLAGYAEANGNGANPGDVWNIPL------ 179

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTK 222
              +     H    P  ++ R ++ +  
Sbjct: 180 ---RRNMGDHLAPFPNEIVRRAILLACP 204



 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 22/34 (64%)

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
              ++LDPF G+GT+ + A ++ RS IG+++   
Sbjct: 315 KPGVVLDPFMGTGTTLSTALEMGRSAIGVDLAPK 348


>gi|224437165|ref|ZP_03658146.1| type III restriction-modification system methylation subunit
           [Helicobacter cinaedi CCUG 18818]
          Length = 1032

 Score = 88.5 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 13/152 (8%)

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
           +I       +   +G  ++ + ET  +       + Y    D++      +    D + P
Sbjct: 694 EITLPSGRKILPPKGYSWRLSKET--FEEYLKDNRIYFNGGDSVPRIKRFLSEVKDGITP 751

Query: 188 --ICSGSERLRNKD---------GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
             I    E   N+D          +KL  T KPE LL RI   ++    IILD F GSGT
Sbjct: 752 LTIWKHKEVGHNQDAAKEILALFDDKLFDTPKPEKLLKRICEIASNQDSIILDFFAGSGT 811

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           S A A+KL R ++GIEM + +  +   R+  V
Sbjct: 812 SLATAQKLGRKWLGIEMGEHFYKVIIPRLKKV 843



 Score = 63.5 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 20/142 (14%)

Query: 22  KIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           ++IK ++   L  L  K    VDLI+ DPPYN   +G +Y              DKF + 
Sbjct: 521 ELIKADNFQALNSLMPKYQGKVDLIYIDPPYNTGNDGFIYS-------------DKF-NH 566

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--ILNDIVWRKSNP 136
            ++ +     L   R  LK +G++++    +   R+  +   +      + +I+W K   
Sbjct: 567 SSWLSMIANRLELAREFLKDSGSIFISIDDNEQARLKILCDEIFGEGNFMANIIWEKVFS 626

Query: 137 MPNFRGRRFQNAHETLIWASPS 158
             N R     N H+ +   S +
Sbjct: 627 AVNLRKDFSPN-HDFISVYSKN 647


>gi|313143630|ref|ZP_07805823.1| adenine-specific DNA methylase [Helicobacter cinaedi CCUG 18818]
 gi|313128661|gb|EFR46278.1| adenine-specific DNA methylase [Helicobacter cinaedi CCUG 18818]
          Length = 822

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 13/152 (8%)

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
           +I       +   +G  ++ + ET  +       + Y    D++      +    D + P
Sbjct: 484 EITLPSGRKILPPKGYSWRLSKET--FEEYLKDNRIYFNGGDSVPRIKRFLSEVKDGITP 541

Query: 188 --ICSGSERLRNKD---------GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
             I    E   N+D          +KL  T KPE LL RI   ++    IILD F GSGT
Sbjct: 542 LTIWKHKEVGHNQDAAKEILALFDDKLFDTPKPEKLLKRICEIASNQDSIILDFFAGSGT 601

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           S A A+KL R ++GIEM + +  +   R+  V
Sbjct: 602 SLATAQKLGRKWLGIEMGEHFYKVIIPRLKKV 633



 Score = 63.5 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 20/142 (14%)

Query: 22  KIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           ++IK ++   L  L  K    VDLI+ DPPYN   +G +Y              DKF + 
Sbjct: 311 ELIKADNFQALNSLMPKYQGKVDLIYIDPPYNTGNDGFIYS-------------DKF-NH 356

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--ILNDIVWRKSNP 136
            ++ +     L   R  LK +G++++    +   R+  +   +      + +I+W K   
Sbjct: 357 SSWLSMIANRLELAREFLKDSGSIFISIDDNEQARLKILCDEIFGEGNFMANIIWEKVFS 416

Query: 137 MPNFRGRRFQNAHETLIWASPS 158
             N R     N H+ +   S +
Sbjct: 417 AVNLRKDFSPN-HDFISVYSKN 437


>gi|309790262|ref|ZP_07684831.1| DNA methylase N-4/N-6 domain protein [Oscillochloris trichoides
           DG6]
 gi|308227688|gb|EFO81347.1| DNA methylase N-4/N-6 domain protein [Oscillochloris trichoides
           DG6]
          Length = 349

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 64/159 (40%), Gaps = 22/159 (13%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           I+G+S+ +L++LP +SVD+    PPY             +  + +         F+ Y  
Sbjct: 22  IQGDSLDILKQLPCESVDMCMTSPPY------------WNKREYMNGGIGLEEDFKEYIN 69

Query: 84  FTRAWLLACRRVLKPNGTLW-VIGSYH-------NIFRIGTMLQNLNFWILNDIVWRKSN 135
                    +RVLK  G+ W  IG  +         +RI   + +   WIL + V     
Sbjct: 70  NLLLVFAEIKRVLKRTGSFWLNIGDTYLAKGLVGLPWRIAIAMMDHQGWILRNDVIWNKI 129

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
             P+    + +N HE L         KGY ++  A+++ 
Sbjct: 130 KGPDNTQDKLRNVHEYLFHFVKQN--KGYYYDDHAIRSK 166



 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 44/85 (51%)

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
              +   P         +  G ++H    PE L    ++++     ++LDPF G+GT+  
Sbjct: 260 YHPNGSKPGDVWEIIPEDTQGREIHYAAYPEDLCKIPILATCPLTGVVLDPFCGTGTTNL 319

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKR 264
           VAK+L R  IGI++ Q+Y+D A +R
Sbjct: 320 VAKQLFRKSIGIDIAQEYLDYAYRR 344


>gi|86160046|ref|YP_466831.1| DNA methylase N-4/N-6 [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776557|gb|ABC83394.1| DNA methylase N-4/N-6 [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 599

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 47/72 (65%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +PTQKP ALL RI+ +S+ PGD++LDPF G GT+   A++L R +IGI++    I +   
Sbjct: 311 YPTQKPLALLERIIATSSCPGDVVLDPFCGCGTAVEAAQRLGREWIGIDVTYLAIRVIRD 370

Query: 264 RIASVQPLGNIE 275
           R+AS  P    E
Sbjct: 371 RLASGFPGIQYE 382



 Score = 76.2 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 79/232 (34%), Gaps = 48/232 (20%)

Query: 22  KIIKGNSISVLEKL-PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD--------SW 72
           K+  G+++ +L +  P + VDL++ DPP+N   +  +   +H L  +V           W
Sbjct: 5   KLYYGDNLPMLREFVPDECVDLVYLDPPFNSNQDYNVLFKEHDLSSSVAQLRAFEDCWHW 64

Query: 73  D------------------------------------KFSSFEAYDAFTRAWLLACRRVL 96
           D                                    + S   AY       L+  RRVL
Sbjct: 65  DQQAQETYEELTGPDSVNHGIPPAVSVLIEAFYKALPQRSDMAAYLVMMAPRLIELRRVL 124

Query: 97  KPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
             +G++++         +  ++  +       N+I+W++++   + R R F    +T+++
Sbjct: 125 ARSGSIYLHCDPTASHYLKLLMDAIFGPEQFRNEIIWKRTHSHGDPR-RNFGAVTDTILF 183

Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
            + SP+ + +                  D    +         K    LH  
Sbjct: 184 YTRSPEYQFHCQYRPFTAEYAAKRFSGKDEDGRVWQSVTLRSPKPRPNLHYA 235


>gi|154486247|ref|ZP_02027654.1| hypothetical protein BIFADO_00050 [Bifidobacterium adolescentis
           L2-32]
 gi|154084110|gb|EDN83155.1| hypothetical protein BIFADO_00050 [Bifidobacterium adolescentis
           L2-32]
          Length = 293

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 88/278 (31%), Gaps = 41/278 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            +  G+S   + ++   SVDL  + PP+           D +       S ++F     Y
Sbjct: 18  TLWLGDSCERMTEMADNSVDLSVSSPPFASLYVY----SDSTRDLGNNSSREEFIENYGY 73

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYH-------------NIFR--IGTMLQNLNFWIL 126
                  +    RV KP G +  +                   FR  +        +   
Sbjct: 74  I------IRELLRVTKP-GRIACVHVQQVVTTKTADGVVGLTDFRGDVIRAYVENGWIFH 126

Query: 127 NDI----------VWRKSNPMPNFRGRRFQNAHET----LIWASPSPKAKGYTFNYDALK 172
            ++          +  K+  +      +  +         +     P         D   
Sbjct: 127 GEVTVNKNPQAQAIRTKAQALMFVTKNKDSSMSRPALADYLLMFRKPGENQVPIKNDVSN 186

Query: 173 AANEDVQMRSDWLIPICSG-SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
               D      W I   +  +ERL  ++ ++ H        + R +   +  G+++ DPF
Sbjct: 187 EEWIDWAQPVWWNIRETNTLNERLGRENTDERHICPLQLDFIERCIRLWSNKGELVFDPF 246

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            G G++   A KL R  + IE+K  Y D +   +  ++
Sbjct: 247 GGIGSTVYEAIKLGRKGMSIELKPSYWDASVNLMRDLE 284


>gi|221369905|ref|YP_002521001.1| DNA methylase N-4/N-6 [Rhodobacter sphaeroides KD131]
 gi|221162957|gb|ACM03928.1| DNA methylase N-4/N-6 [Rhodobacter sphaeroides KD131]
          Length = 120

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 2/94 (2%)

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
           ++A  +           +   + R  ++D + +H TQKP   + R +++++ PG  I +P
Sbjct: 1   MRAKGKGHWAGDRKQTTLWQIANR--DQDADTVHGTQKPVECMRRPILNNSSPGQAIYEP 58

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           F GSGT+   A+   R  +G+E+   Y+D+A +R
Sbjct: 59  FMGSGTTLIAAETTGRVCLGVELNPAYVDVAIER 92


>gi|218703091|ref|YP_002410720.1| putative DNA adenine methyltransferase ( DNA methylase) from phage
           origin [Escherichia coli IAI39]
 gi|218373077|emb|CAR20969.1| putative DNA adenine methyltransferase ( DNA methylase) from phage
           origin [Escherichia coli IAI39]
          Length = 351

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 17/130 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAY 81
           +I  + +  ++ LP  S+DLI  DPPY                    + WD ++   E Y
Sbjct: 13  LINADCLHFIQSLPDDSIDLIVTDPPYF---------------KVKPNGWDNQWKGDEDY 57

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N  
Sbjct: 58  LKWLDHCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAKPSGRWNGC 116

Query: 142 GRRFQNAHET 151
            +    A+  
Sbjct: 117 NKESLRAYFP 126



 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 43/83 (51%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 266 VPYTDVWMHKPVQFYPGKHPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALG 325

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  +G+E++ +  +   K I  +
Sbjct: 326 RLALGVELESERFNQTVKEINEL 348


>gi|220918853|ref|YP_002494157.1| DNA methylase N-4/N-6 domain protein [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219956707|gb|ACL67091.1| DNA methylase N-4/N-6 domain protein [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 599

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 47/72 (65%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +PTQKP ALL RI+ +S+ PGD++LDPF G GT+   A++L R +IGI++    I +   
Sbjct: 311 YPTQKPLALLERIIATSSCPGDVVLDPFCGCGTAVEAAQRLGREWIGIDVTYLAIRVIRD 370

Query: 264 RIASVQPLGNIE 275
           R+AS  P    E
Sbjct: 371 RLASGFPGIQYE 382



 Score = 76.2 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 79/232 (34%), Gaps = 48/232 (20%)

Query: 22  KIIKGNSISVLEKL-PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD--------SW 72
           K+  G+++ +L +  P + VDL++ DPP+N   +  +   +H L  +V           W
Sbjct: 5   KLYYGDNLPMLREFVPDECVDLVYLDPPFNSNQDYNVLFKEHDLSSSVAQLRAFEDCWHW 64

Query: 73  D------------------------------------KFSSFEAYDAFTRAWLLACRRVL 96
           D                                    + S   AY       L+  RRVL
Sbjct: 65  DQQAQETYEELTGPDSVNHGIPPAVSVLIEAFYKALPQRSDMAAYLVMMAPRLIELRRVL 124

Query: 97  KPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
             +G++++         +  ++  +       N+I+W++++   + R R F    +T+++
Sbjct: 125 ARSGSIYLHCDPTASHYLKLLMDAIFGPEQFRNEIIWKRTHSHGDPR-RNFGAVTDTILF 183

Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
            + SP+ + +                  D    +         K    LH  
Sbjct: 184 YTRSPEYQFHCQYRPFTAEYAAKRFSGKDEDGRVWQSVTLRSPKPRPNLHYA 235


>gi|320172932|gb|EFW48161.1| putative DNA methylase [Shigella dysenteriae CDC 74-1112]
 gi|332083675|gb|EGI88893.1| DNA methylase family protein [Shigella dysenteriae 155-74]
          Length = 350

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 17/130 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAY 81
           +I  + +  ++ LP  S+DLI  DPPY                    + WD ++   E Y
Sbjct: 12  LINADCLHFIQSLPDDSIDLIVTDPPYF---------------KVKPNGWDNQWKGDEDY 56

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N  
Sbjct: 57  LKWLDHCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAKPSGRWNGC 115

Query: 142 GRRFQNAHET 151
            +    A+  
Sbjct: 116 NKESLRAYFP 125



 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 43/83 (51%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWMHKPVQFYPGKHPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  +G+E++ +  +   K I  +
Sbjct: 325 RRALGVELESERFNQTVKEINEL 347


>gi|240142079|ref|YP_002966589.1| putative DNA methylase N-4/N-6 [Methylobacterium extorquens AM1]
 gi|240012023|gb|ACS43248.1| putative DNA methylase N-4/N-6 [Methylobacterium extorquens AM1]
          Length = 440

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/289 (19%), Positives = 93/289 (32%), Gaps = 68/289 (23%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           +  ++      +   S+DLI   PPY +                V  ++ +F +   + A
Sbjct: 152 LWAHAEEAASAIEPGSLDLIMTSPPYPV----------------VNRAYGRF-TVPDWLA 194

Query: 84  FTRAWLLACRRVLKPNGTLW-----------VIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           +    +   + +L   GTL               S +        +      +   + W 
Sbjct: 195 WMSDLVGMWKELLTDRGTLCVNLMDVFQPGTPCLSPYVERFTIDAIDRHGLHLAGRMPWH 254

Query: 133 KSNPMPN-----FRGRRFQNAHETLIWASPSPKAKGYTFN-------------------- 167
               + N      R  R +N+ E +I  S  P     T                      
Sbjct: 255 SPTKLANIEWAVKRRVRLRNSVEHVILFSKDPNPNWDTRRLPREEYADRSEARLAAGRRR 314

Query: 168 ----YDALKAANEDVQMRSD-WLIPI----------CSGSERLRNKDGEKLHPTQKPEAL 212
                 +    NE    R+D   IP            S   +   + G  +HP + PEAL
Sbjct: 315 ASTVRPSGYDLNEAAFERNDNGRIPGNLLVAGGASGASTFAKRCREAGVPIHPARFPEAL 374

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             R++  +T  G  + DP  GS T+G VA +L R FI  E    Y + +
Sbjct: 375 PRRVIQLTTDVGQTVYDPMAGSNTTGKVALELGRRFISSEPMLAYAEAS 423


>gi|148609438|ref|YP_001272569.1| putative DNA methylase [Phage cdtI]
 gi|148524767|dbj|BAF63389.1| putative DNA methylase [Phage cdtI]
 gi|309704853|emb|CBJ04205.1| predicted methyltransferase [Escherichia coli ETEC H10407]
 gi|324020455|gb|EGB89674.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 117-3]
          Length = 350

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 17/130 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAY 81
           +I  + +  ++ LP  S+DLI  DPPY                    + WD ++   E Y
Sbjct: 12  LINADCLHFIQSLPDDSIDLIVTDPPYF---------------KVKPNGWDNQWKGDEDY 56

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N  
Sbjct: 57  LKWLDHCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAKPSGRWNGC 115

Query: 142 GRRFQNAHET 151
            +    A+  
Sbjct: 116 NKESLRAYFP 125



 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 43/83 (51%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWMHKPVQFYPGKHPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  +G+E++ +  +   K I  +
Sbjct: 325 RRALGVELESERFNQTVKEINEL 347


>gi|171060836|ref|YP_001793185.1| DNA methylase N-4/N-6 domain-containing protein [Leptothrix
           cholodnii SP-6]
 gi|170778281|gb|ACB36420.1| DNA methylase N-4/N-6 domain protein [Leptothrix cholodnii SP-6]
          Length = 553

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 7/92 (7%)

Query: 184 WLIPICSGSERLRNKDG-------EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
           W     +G  +   +D         +  PT KPE LL RI   +T PGD++LD F GSGT
Sbjct: 283 WWPADEAGHNQEAKRDHLNKLLRDVEPFPTPKPERLLHRIFSIATNPGDLVLDSFAGSGT 342

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +GAVA K+ R +I +E+ +        R+  V
Sbjct: 343 TGAVAHKMGRRWIMVELGEHCHTHIVPRLQKV 374



 Score = 76.9 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 108/345 (31%), Gaps = 44/345 (12%)

Query: 19  WKDKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + +++IKG+++  L+ L A+    V  +F DPPYN                +    +D  
Sbjct: 44  FDNRLIKGDNLLALKALEAEFAGRVKCVFIDPPYNTG--------------SAFTHYDDG 89

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
                +    R  L   RR+L  +G+LW+    +    +  +   +              
Sbjct: 90  LEHSIWLGLMRDRLEIIRRLLSDDGSLWITIDDNEAHYLKVLCDEVFGRRNYLTSVVWEK 149

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR--SDWLIPICSGSE 193
                    F  +H+ ++  + +P   G T N        E       +D   P   G  
Sbjct: 150 DKGRRSDTTFSASHDYVLIYARNPDLFGKTRNLLERTEDQESRYRNPDNDPRGPWLQGDN 209

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
                  E    ++ P  L S   V               S  +   A+   R + G   
Sbjct: 210 GTAKSSSEG---SRFPVVLPSGRSVVPPPSRGWSF-----SRETLETARAEGRVYFGA-- 259

Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQG--- 310
           K D + I  + +++VQ  G +  T                    L++  +     +    
Sbjct: 260 KGDGMPIIKRYLSAVQA-GVVPRTWWPADEAGHNQEAKRDHLNKLLRDVEPFPTPKPERL 318

Query: 311 --NISATVCADGTLISGTELGS------IHRVGAK---VSGSETC 344
              I +     G L+  +  GS       H++G +   V   E C
Sbjct: 319 LHRIFSIATNPGDLVLDSFAGSGTTGAVAHKMGRRWIMVELGEHC 363


>gi|323174398|gb|EFZ60023.1| DNA methylase family protein [Escherichia coli LT-68]
          Length = 352

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 17/130 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAY 81
           +I  + +  ++ LP  S+DLI  DPPY                    + WD ++   E Y
Sbjct: 12  LINADCLHFIQSLPDDSIDLIVTDPPYF---------------KVKPNGWDNQWKGDEDY 56

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N  
Sbjct: 57  LKWLDHCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAKPSGRWNGC 115

Query: 142 GRRFQNAHET 151
            +    A+  
Sbjct: 116 NKESLRAYFP 125



 Score = 75.8 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 41/78 (52%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +++ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTHKPVQYYPGKHPCEKPADMLRQMITASSRPGDLVADFFMGSGSTVKAAMALG 324

Query: 246 RSFIGIEMKQDYIDIATK 263
           R  IG+E++ +  +   +
Sbjct: 325 RRAIGVELEAERFEQTAR 342


>gi|29565979|ref|NP_817550.1| gp101 [Mycobacterium phage Cjw1]
 gi|29424704|gb|AAN01715.1| gp101 [Mycobacterium phage Cjw1]
          Length = 231

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
             N+DG K+ H T KP AL+  ++   T PG ++LDPF GSGT+       +   I IE 
Sbjct: 154 YVNEDGNKVAHSTVKPLALMRWLVKLVTPPGGVVLDPFAGSGTTVEACLLEKFRCIAIEN 213

Query: 254 KQDYIDIATKRIA 266
           + DYI +  +R+ 
Sbjct: 214 EPDYIPLIEQRLE 226


>gi|324117943|gb|EGC11842.1| DNA methylase [Escherichia coli E1167]
          Length = 350

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 17/130 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAY 81
           +I  + +  ++ LP  S+DLI  DPPY                    + WD ++   E Y
Sbjct: 12  LINADCLHFIQSLPDDSIDLIVTDPPYF---------------KVKPNGWDNQWKGDEDY 56

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N  
Sbjct: 57  LKWLDHCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAKPSGRWNGC 115

Query: 142 GRRFQNAHET 151
            +    A+  
Sbjct: 116 NKESLRAYFP 125



 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 43/83 (51%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWMHNPVQFYPGKHPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  +G+E++ +  +   K I  +
Sbjct: 325 RRALGVELESERFNQTVKEINEL 347


>gi|331681946|ref|ZP_08382579.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H299]
 gi|294490683|gb|ADE89439.1| DNA methylase [Escherichia coli IHE3034]
 gi|331081148|gb|EGI52313.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H299]
          Length = 353

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 17/130 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAY 81
           +I  + +  ++ LP  S+DLI  DPPY                    + WD ++   E Y
Sbjct: 12  LINADCLHFIQSLPDDSIDLIVTDPPYF---------------KVKPNGWDNQWKGDEDY 56

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N  
Sbjct: 57  LKWLDHCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAKPSGRWNGC 115

Query: 142 GRRFQNAHET 151
            +    A+  
Sbjct: 116 NKESLRAYFP 125



 Score = 76.2 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 43/81 (53%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWMHKPVQFYPGKHPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIA 266
           R  +G+E++ +  +   + I+
Sbjct: 325 RRALGVELETERFNQTIQEIS 345


>gi|296136000|ref|YP_003643242.1| DNA methylase N-4/N-6 domain protein [Thiomonas intermedia K12]
 gi|295796122|gb|ADG30912.1| DNA methylase N-4/N-6 domain protein [Thiomonas intermedia K12]
          Length = 508

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/115 (34%), Positives = 57/115 (49%), Gaps = 8/115 (6%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +    KPE LLSRI+  +T PGD++LD F GSGT+ AVA K+ R +IGIEM +       
Sbjct: 300 VFDNPKPEGLLSRIVHIATNPGDLVLDSFLGSGTTAAVAHKMGRRWIGIEMGEHARTHCI 359

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
            R+  V       ++   G +      F  L        G+   +A G+I+A V 
Sbjct: 360 PRLQKVIDGEQGGISEAVGWKGGGGFRFYTL--------GETAFDAHGHINAAVR 406



 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 65/190 (34%), Gaps = 20/190 (10%)

Query: 21  DKIIKGNSISVLEKL-P--AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + +I+G+++  L+ L P  A  V  IF DPPYN Q              +  + +D    
Sbjct: 36  NLLIQGDNLLALKALIPFYAGQVKCIFIDPPYNTQ--------------SAFEHYDDKLE 81

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
              + +     L+  R +L  +G++WV      +  +  ++  +                
Sbjct: 82  HSQWLSMMYPRLVLLRELLAEDGSIWVTIDDREVHYLKVLIDEVFGRANFVANMIWEKRT 141

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                R F   H+ L+  +    +KG           N +V  R         G  +  +
Sbjct: 142 SRENRRVFSFNHDHLLVCAR---SKGQFELVRNPLGLNAEVLARYKNPDDDPRGPWQSVS 198

Query: 198 KDGEKLHPTQ 207
            + +  H T 
Sbjct: 199 ANAQAGHATP 208


>gi|237755767|ref|ZP_04584371.1| modification methylase, type III R/M system [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692077|gb|EEP61081.1| modification methylase, type III R/M system [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 984

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/301 (17%), Positives = 98/301 (32%), Gaps = 77/301 (25%)

Query: 37  AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
              V  I+ DPP+N     +    D+       D+         + +     L   R +L
Sbjct: 493 GNRVQTIYIDPPFN-----KEQDADYLYNVKYKDA--------TWISMLENRLSLARELL 539

Query: 97  KPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMPNFRGRR---------- 144
              G+++V   Y+    +  ++  +       N+IV  ++  +                 
Sbjct: 540 NEKGSIFVRCDYNGNMYVRLLMNEIFGKEIFRNEIVVNRTKKIFTGVKGYNVATDSLFFF 599

Query: 145 --------------------FQNAH--------ETLIWASPSPKAKGYTFNYDALKAAN- 175
                               + N H        E +I+       KG  + +        
Sbjct: 600 TKKEDFKFYAQYKQREQEQKWLNMHSPGERRPPERIIFGKVFYPPKGRHWTFTQETIDKM 659

Query: 176 --------EDVQMRSDWLIPICSGSERLRNKDGEKL---------------HPTQKPEAL 212
                   ++     D +     G  +    + E L                 T+  E L
Sbjct: 660 IKEGRIRIKEDVEYIDLMGNKVKGMPQYLTGEEELLDSNWTDIPGYSFGWDFQTENSEIL 719

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
           L R++ S++   D+++D F GSGT+ AVA KLRR +IGIEM + +  +   R+  V    
Sbjct: 720 LKRVIESTSNENDLVMDFFLGSGTTTAVAHKLRRKWIGIEMGEHFWTVIMPRMKKVLAYD 779

Query: 273 N 273
            
Sbjct: 780 K 780


>gi|15612361|ref|NP_224014.1| putative type III DNA modification enzyme (methyltransferase)
           [Helicobacter pylori J99]
 gi|4155899|gb|AAD06869.1| putative TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
           [Helicobacter pylori J99]
          Length = 620

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/67 (53%), Positives = 46/67 (68%), Gaps = 2/67 (2%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IA 261
           L  T KPEALL RIL  ST   D++LD F GSGT+ AVA K++R +IGIE + DYI+ I 
Sbjct: 435 LFSTPKPEALLQRILEISTNENDLVLDFFAGSGTTCAVAHKMKRRYIGIE-QMDYIETIT 493

Query: 262 TKRIASV 268
            +R+  V
Sbjct: 494 KERLKKV 500



 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 48/145 (33%), Gaps = 17/145 (11%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVD---LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
            E  + +IKGN++  L  L  K       I+ DPPYN   +   Y              D
Sbjct: 162 DENTNYLIKGNNLIALHSLKKKFAKKVKCIYIDPPYNTGNDSFNY-------------ND 208

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
            F +  ++  F +  L A R  L  +G ++V    +    +  ++  +         +  
Sbjct: 209 NF-NHSSWLVFMKNRLEAAREFLSDDGVIFVQCDDNEQAYLKVLMDEIFGRENFIACFVW 267

Query: 134 SNPMPNFRGRRFQNAHETLIWASPS 158
                +    R +  +      +  
Sbjct: 268 EKTSNSLSRIRIKTEYILCYEQTKF 292


>gi|307638042|gb|ADN80492.1| type II DNA modification enzyme [Helicobacter pylori 908]
 gi|325996646|gb|ADZ52051.1| Type III restriction-modification system methylation subunit
           [Helicobacter pylori 2018]
 gi|325998235|gb|ADZ50443.1| Type III restriction-modification system methylation subunit
           [Helicobacter pylori 2017]
          Length = 243

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 45/72 (62%)

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           N+  E +    KPEALL RIL  ST+  D++ D F GSGT+ AVA KL+R +IG+EM + 
Sbjct: 58  NEGRETIFNNPKPEALLQRILEISTQENDLVCDFFAGSGTTCAVAHKLKRKYIGVEMGEH 117

Query: 257 YIDIATKRIASV 268
           +  +   R+  V
Sbjct: 118 FESVILPRLKKV 129


>gi|191173171|ref|ZP_03034703.1| DNA methylase [Escherichia coli F11]
 gi|300992750|ref|ZP_07180027.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 200-1]
 gi|190906556|gb|EDV66163.1| DNA methylase [Escherichia coli F11]
 gi|300305246|gb|EFJ59766.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 200-1]
 gi|324010839|gb|EGB80058.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 60-1]
          Length = 350

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 17/130 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAY 81
           +I  + +  ++ LP  S+DLI  DPPY                    + WD ++   E Y
Sbjct: 12  LINADCLHFIQSLPDDSIDLIVTDPPYF---------------KVKPNGWDNQWKGDENY 56

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N  
Sbjct: 57  LKWLDHCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAKPSGRWNGC 115

Query: 142 GRRFQNAHET 151
            +    A+  
Sbjct: 116 NKESLRAYFP 125



 Score = 77.3 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 44/83 (53%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTHKPVQFYPGKHPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  +G+E++ +  +   K ++ +
Sbjct: 325 RRALGVELESERFNQTVKEVSEL 347


>gi|218513326|ref|ZP_03510166.1| DNA methylase N-4/N-6 domain-containing protein [Rhizobium etli
           8C-3]
          Length = 321

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 7/92 (7%)

Query: 184 WLIPICSGSERLRNKD-------GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
           W     +G  +   +D       G +  PT KPE LL RIL  +T PGD+ILD F GSGT
Sbjct: 230 WWPADEAGHNQEAKRDHLNKLLRGIEPFPTPKPERLLHRILTIATNPGDLILDSFAGSGT 289

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +GAVA K+ R +I +E+ +        R+  V
Sbjct: 290 TGAVAHKMGRRWIMVELGEHCHTHIIPRLKKV 321



 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 71/243 (29%), Gaps = 29/243 (11%)

Query: 32  LEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
           L+ L  +    +  +F DPPYN                +  + +        +    R  
Sbjct: 4   LKALEQEFTGKIKCVFIDPPYNTG--------------SAFEHYHDGVEHSIWLGLMRDR 49

Query: 89  LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
           L    R+L  NG+LW+    +       M   +                       F +A
Sbjct: 50  LEIIWRLLAENGSLWITLDDNESHYFKVMADEIFGRRNYVASVVWEKDKGRRSDTIFSSA 109

Query: 149 HETLIWASPSPKAKGYTFNYDALKA--ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
           H+ ++  + +P     + N     A   +      +D   P   G         E    +
Sbjct: 110 HDYILIYAKNPTIWADSRNLLERTADQVSRYRNTDNDPRGPWLQGDNGTAKSSSEG---S 166

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           + P  L S   V               S  +   A++  R + G     D + I  + ++
Sbjct: 167 RWPITLPSGRSVVPPPSRGWSF-----SRETFETARREGRVYFGA--NGDGMPIIKRYLS 219

Query: 267 SVQ 269
            VQ
Sbjct: 220 DVQ 222


>gi|254779922|ref|YP_003058028.1| putative type III restriction enzyme M protein [Helicobacter pylori
           B38]
 gi|254001834|emb|CAX30077.1| Putative type III restriction enzyme M protein [Helicobacter pylori
           B38]
          Length = 626

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 2/88 (2%)

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
            D  +    G+E ++     ++    KPEALL RIL  STK  D++LD F GSGT+ AVA
Sbjct: 420 WDKSMITQKGTEEVKQIFKTQIFDFPKPEALLQRILEISTKENDLVLDFFAGSGTTCAVA 479

Query: 242 KKLRRSFIGIEMKQDYID-IATKRIASV 268
            K++R +IGIE + DYI+ I  +R+  V
Sbjct: 480 HKMKRRYIGIE-QMDYIETITKERLKKV 506



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 58/144 (40%), Gaps = 21/144 (14%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            + +IKGN++  L  L    AK V  I+ DPPYN   +   Y              D F 
Sbjct: 165 TNYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNY-------------NDNF- 210

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           +  ++  F +  L A R  L  +G ++V    +    +  ++  +  ++  + V   ++ 
Sbjct: 211 NHSSWLVFMKNRLEAAREFLSDDGVIFVQCDDNEQAYLKVLMDEI--FLRENFVSCITHI 268

Query: 137 MPNFRGRRFQNA--HETLIWASPS 158
           +        Q A  HE ++  + +
Sbjct: 269 VKPEGRMYGQVAKTHEYILVYAKN 292


>gi|313897109|ref|ZP_07830654.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. HGF2]
 gi|312958037|gb|EFR39660.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. HGF2]
          Length = 298

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/276 (17%), Positives = 94/276 (34%), Gaps = 48/276 (17%)

Query: 23  IIKGNSISVLEKLPAKSVDL---IFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +  G+S  V++ LP +S  +   IF  PP+            ++  D+  D  +  S+ E
Sbjct: 15  LYNGDSCEVMQGLPDES--MGYSIF-SPPF---------EDLYTYSDSPRDLGNCRSTEE 62

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIG-------------SYHNIFRI-GTMLQNLNFWI 125
            Y  F    +    R+ KP   + +                  +   I   + Q+  F+ 
Sbjct: 63  FYKQFGY-IVAELFRITKPGRLVSIHCMDLPTTKASDGFIGLRDFPGILRELFQDYGFYY 121

Query: 126 LNDIVWRKSNPMPNFRGR----------------RFQNAHETLIWASPSPKAKGYTFNYD 169
            + I   K   +   R +                R   A   +    P    +  T   +
Sbjct: 122 HSKITIWKDPVVAMQRTKHIGLLHKQLKKDSAMSRQGIADYIVTMRKPGENKEPITHTNE 181

Query: 170 ALKAANEDVQMRSDWLIPICSG--SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
           +   +         W+    S   +     ++ ++ H       ++ R +   T  GD +
Sbjct: 182 SFPVSKWQEYASPVWMNIRQSNTLNRTSAREERDEKHICPLQLDVIERCIELWTNQGDTV 241

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
             PF G G+    + K+ R  +GIE+K+ Y + A K
Sbjct: 242 FTPFLGIGSEAYQSIKMHRKAVGIELKESYFEQAVK 277


>gi|126668728|ref|ZP_01739678.1| putative site-specific DNA-methyltransferase [Marinobacter sp.
           ELB17]
 gi|126626828|gb|EAZ97475.1| putative site-specific DNA-methyltransferase [Marinobacter sp.
           ELB17]
          Length = 406

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/294 (18%), Positives = 92/294 (31%), Gaps = 74/294 (25%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
            VL  L    + L+   PPY LQ       P+                   Y  F    L
Sbjct: 117 DVLNAL-NAPITLVLTSPPYPLQTARAYGNPN----------------LNQYIDFVVESL 159

Query: 90  LACRRVLKPNGTLWVIGS-------------YHNIFRIGTMLQNLNFWILNDIVWRKS-- 134
               + L+P G++ +  S             Y     I      L  W +++++W     
Sbjct: 160 RPIAKHLEPGGSICLNLSNDIFEPGIPARSLYRERLVIALA-DELKLWKMDELIWHNPCK 218

Query: 135 NPMPNFRGRRFQN----AHETLIWASPSP------------------------------- 159
            P P     + +N    A E + W + +P                               
Sbjct: 219 PPGPIAWASKKRNQLNVAWEPVYWFTNNPALVKSDNRRVLQPHSERHLKLIEAGGTASAR 278

Query: 160 --KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL----HPTQKPEALL 213
                 Y     A          R+    P    ++    K   +L    H    P +L 
Sbjct: 279 TASDNAYRTRKGAYGKPTAGKIPRNILTFPHNCPAQSRYKKAARELGIAPHGAPFPLSLA 338

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           + ++   T+PGD+++DPF GS T+G  A++  R ++ IE   +Y+     R   
Sbjct: 339 TFLIRFLTEPGDLVIDPFAGSLTTGDAAQREGRRWLMIECMWEYLRAGATRFQE 392


>gi|291622001|emb|CAX65034.1| gp53 protein [Vibrio phage VP58.5]
          Length = 163

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/147 (29%), Positives = 63/147 (42%), Gaps = 20/147 (13%)

Query: 13  QNSIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
           Q  +   K+  +   +   +L+ LP  SVDLI  DPPY                DA  + 
Sbjct: 3   QKKLEPRKNITVFNADCSQLLKTLPDNSVDLIATDPPYF-----------RVKQDAWDNQ 51

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           WD  +    + A+    L    RVLKP+G+L++  S     R   ++    F +LN IVW
Sbjct: 52  WDDEA---EFLAWLDDILFDLWRVLKPSGSLYLFCSDRLAARTEVLIAE-RFNVLNHIVW 107

Query: 132 RKSNPMPNFRG----RRFQNAHETLIW 154
           RK N +         RRF    E +I+
Sbjct: 108 RKENGVHKRHRKEGLRRFCPQTERIIF 134


>gi|262383519|ref|ZP_06076655.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides sp.
           2_1_33B]
 gi|262294417|gb|EEY82349.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides sp.
           2_1_33B]
          Length = 583

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 64/335 (19%), Positives = 121/335 (36%), Gaps = 83/335 (24%)

Query: 17  FEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPY-----------NLQLN-------- 54
            + K+ +IKG++ ++L +L +   + +  I+ DPPY           N+  +        
Sbjct: 20  EDCKNILIKGDNKAILPELASVYGEKIKCIYIDPPYNNGDTYHYYNDNISTSAWLKDMRT 79

Query: 55  -----GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLAC----RRVLKPNGTLWVI 105
                 QL + D S+  ++ D    +   EA   F R          +R  + N  ++  
Sbjct: 80  VFIWLKQLLKKDGSIWISIDDKEMAYLKIEADKIFGRENFAGTIIWQQRKTRENRAVFSC 139

Query: 106 GSYHNIFRIGTML-----QNLNFWILNDIVWRKSNPMPNFRGRRFQ------------NA 148
              + +     +      +NL       I  +  NP  + RG                + 
Sbjct: 140 NHEYVLVYAKDIKAFKKSRNLLPVEEGFIDSKYKNPDNDPRGPWQSITASVQAGHAVASQ 199

Query: 149 HETLI------WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP--------------- 187
             T+I      +  P  +   Y       + AN ++    D                   
Sbjct: 200 FYTIISPAGIEFNPPKGRCWAYNQERMLKEIANNNIWFGFDGKNTPRIKKFLANAKIGLT 259

Query: 188 ---ICSGSERLRNKDGEK-----------LHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
              + +G         +K           +  T KPE L+ +I+  ++  G+ +LD + G
Sbjct: 260 PETLWTGDNYGTTDSAKKHLLSLFPEMEQVFDTPKPEELIKQIIEIASNEGEYVLDCYIG 319

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           SGT+ A A KL+R++IGIE+     ++ T+R+  V
Sbjct: 320 SGTTIATAHKLKRNYIGIEIGDQMTELVTRRMRKV 354


>gi|240125893|ref|ZP_04738779.1| putative type III restriction/modification system modification
           methylase [Neisseria gonorrhoeae SK-92-679]
          Length = 503

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 27/212 (12%)

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT--LWVIGSYHN-IFRIGTM 117
            ++ V  +TD        +  + F   ++   +   +  G   +  I       +R G  
Sbjct: 177 KNNTVSTITDEEFSQIYNKDLEVFNDDFIQKLKEKYENLGYNFILPIADKQWGRWRWGYS 236

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
           ++N      + IV +  N +  ++ +R     E     +  PK   Y   Y +       
Sbjct: 237 IKNKARLQTDIIVSQSKNGISLYKKQRP----ELDDLPTKKPKTIFYKPEYSSG------ 286

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                       +G+E+++N  GEK     KPE L+   +  +T   DI+LD   GSGT+
Sbjct: 287 ------------NGTEQMKNLFGEKAFKNPKPEELIQDFITITTNENDIVLDYHLGSGTT 334

Query: 238 GAVAKKLRRSFIGIEMKQDYID-IATKRIASV 268
            AVA K+ R +IGIE + DYI+ +A +R+  V
Sbjct: 335 AAVAHKMNRQYIGIE-QMDYIETLAVERMKKV 365



 Score = 40.4 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 49/178 (27%), Gaps = 11/178 (6%)

Query: 38  KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK 97
             V LI+ DPPY        Y       D+    ++       +  F +  LL  + +L 
Sbjct: 10  GKVKLIYIDPPY--------YFVKKKPQDSFG--YNTNFKLSTWLTFMKNRLLIAKELLT 59

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
            +G + +         +  +L  +  F      +    N   N     F   HE  +  +
Sbjct: 60  DDGIIVISIDDDGNAYLKILLDEIFGFENFIGNLPTIMNLKGNNDEYAFAGTHEYTLVFA 119

Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
            +     +           E  +          +       +D  +  P      L+ 
Sbjct: 120 KNKDKSTFYEFPIDEDNFLEKWEEDEIGFYKKGAPMRATGTEDKREDRPEMFYPFLVK 177


>gi|328948541|ref|YP_004365878.1| DNA methylase N-4/N-6 domain protein [Treponema succinifaciens DSM
           2489]
 gi|328448865|gb|AEB14581.1| DNA methylase N-4/N-6 domain protein [Treponema succinifaciens DSM
           2489]
          Length = 396

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 69/175 (39%), Gaps = 24/175 (13%)

Query: 101 TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA--------HETL 152
            L+        F     L        + +       M   +GR ++ +         + L
Sbjct: 197 RLYKKIDEQGKFYTTVPLHAPGET-KDGVTGGTFRGMLPPKGRHWRTSPAELEKLDEQGL 255

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
           I  S +   +   F  +      +D+    D+  P+               +PT+K   L
Sbjct: 256 IEWSKNGVPRRKIFADEQKGKKLQDIWDFKDYQYPV---------------YPTEKNLDL 300

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           L  I+ +S+ P  +++D F GSGT+   A++L R++IGI+  +  I++  K+I  
Sbjct: 301 LKLIVQTSSNPESLVMDFFCGSGTTLIAAQELGRNWIGIDKSEKAIEVTRKKITK 355



 Score = 77.3 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 60/155 (38%), Gaps = 11/155 (7%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPAKS-----VDLIFADPPYNLQLNGQLYRPDHSLVDA 67
              I E ++ +I G+++  L  L   S     +DLI+ DPP+       +     S + +
Sbjct: 24  SKPISEKENILINGDNLEALRILVHNSNLKGKIDLIYIDPPFATNGTFTISEERASTISS 83

Query: 68  VTDSWDKFSSF---EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
                  ++     E +  F R  L+  R +L   G++++   Y     +  ++  +   
Sbjct: 84  SKKDEIAYTDNLLGEKFLEFLRERLILARELLSERGSIYLHIDYKIGHYVKIIMDEIFGT 143

Query: 125 --ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
               NDI   K NP    R     N  + +++ S 
Sbjct: 144 KNFRNDITRIKCNPKNFSRKAYG-NIKDLILFYSK 177


>gi|300724259|ref|YP_003713577.1| putative DNA methylase [Xenorhabdus nematophila ATCC 19061]
 gi|297630794|emb|CBJ91463.1| putative DNA methylase [Xenorhabdus nematophila ATCC 19061]
          Length = 345

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 63/162 (38%), Gaps = 23/162 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
            +I  +S+  ++ LP   +DLI  DPPY                     SWD +++   A
Sbjct: 7   TLINDDSLKFIKTLPDNCIDLIATDPPYF---------------RVKACSWDNQWADVTA 51

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y A+    L  C RVLKPNG+L++            +++     + + I  + S P    
Sbjct: 52  YLAWLDELLAECWRVLKPNGSLYMFCGSRLAADTELLVRERFNVLNHIICAKPSGP---- 107

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
              R QN  E+L    P+ +   +  +Y        D   + 
Sbjct: 108 --WRRQNK-ESLRMYFPATERIIFAEHYQGPYHPKGDGYYKQ 146



 Score = 76.6 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 42/80 (52%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P     +    +     HP +KP  L++ I+ SS++ GD++ D F GSG +   A KL 
Sbjct: 260 VPYTDVWQFAPVQYYSGKHPCEKPADLMAHIIQSSSREGDLVADFFMGSGATLKTALKLN 319

Query: 246 RSFIGIEMKQDYIDIATKRI 265
           R  +G+E++++      + I
Sbjct: 320 RRVLGVELEEERFKQTIQEI 339


>gi|108756876|ref|YP_629467.1| modification methylase [Myxococcus xanthus DK 1622]
 gi|108460756|gb|ABF85941.1| modification methylase [Myxococcus xanthus DK 1622]
          Length = 423

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            G   HPT K  AL+  +    T PG  +LD F GSG++G  A      FIGIE +  Y 
Sbjct: 344 GGRNHHPTVKSLALMRWLCRLITPPGGTVLDLFAGSGSTGVAALAEGFDFIGIEREPAYA 403

Query: 259 DIATKRI-ASVQPLGN 273
           +IA  R+  +++PL  
Sbjct: 404 EIAHARLCHAIEPLPK 419


>gi|210135567|ref|YP_002302006.1| type III R-M system methyltransferase [Helicobacter pylori P12]
 gi|210133535|gb|ACJ08526.1| type III R-M system methyltransferase [Helicobacter pylori P12]
          Length = 625

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/88 (40%), Positives = 54/88 (61%), Gaps = 2/88 (2%)

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
            D  +    G+E ++     ++    KPEAL+SRIL  +T   D++LD F GSGT+ AVA
Sbjct: 419 WDKSMITQKGTEEVKQIFKTQIFDFPKPEALISRILEIATNENDLVLDFFAGSGTTCAVA 478

Query: 242 KKLRRSFIGIEMKQDYID-IATKRIASV 268
            K++R +IGIE + DYI+ I  +R+  V
Sbjct: 479 HKMKRRYIGIE-QMDYIETITKERLKKV 505



 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 58/144 (40%), Gaps = 21/144 (14%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            + +IKGN++  L  L    AK V  I+ DPPYN   +   Y              D F 
Sbjct: 164 TNYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNY-------------NDNF- 209

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           +  ++  F +  L A R  L  +G ++V    +    +  ++  +  ++  + V   ++ 
Sbjct: 210 NHSSWLVFMKNRLEAAREFLSDDGVIFVQCDDNEQAYLKVLMDEI--FLRENFVSCITHI 267

Query: 137 MPNFRGRRFQNA--HETLIWASPS 158
           +        Q A  HE ++  + +
Sbjct: 268 VKPEGRMYGQVAKTHEYILVYAKN 291


>gi|194303394|ref|YP_002014419.1| gp98 [Mycobacterium phage Porky]
 gi|194150879|gb|ACF33915.1| gp98 [Mycobacterium phage Porky]
          Length = 419

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 43/116 (37%), Gaps = 19/116 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I  G+   +L +L   SVD I  DPPY L                ++  WD         
Sbjct: 8   IHLGDCRDILAELEDASVDSIVTDPPYELGF--------------MSKKWDGSG-----I 48

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           AF       C RVLKP G L   G      R+   +++  F I + I W   +  P
Sbjct: 49  AFDVEMWEQCLRVLKPGGHLLAFGGSRTWHRLTVAIEDAGFEIRDSIAWLYGSGFP 104



 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
             N+DG K+ H T KP AL+  ++   T PG ++LDPF GSGT+       +   I IE 
Sbjct: 342 YVNEDGTKVAHNTVKPLALMRWLVKLVTPPGGVVLDPFAGSGTTVEACLLEKFRCIAIEN 401

Query: 254 KQDYIDIATKRIA 266
           + DYI +  +R+ 
Sbjct: 402 EPDYIPLIEQRLE 414


>gi|240080531|ref|ZP_04725074.1| putative type III restriction/modification system modification
           methylase [Neisseria gonorrhoeae FA19]
          Length = 492

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 27/212 (12%)

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT--LWVIGSYHN-IFRIGTM 117
            ++ V  +TD        +  + F   ++   +   +  G   +  I       +R G  
Sbjct: 166 KNNTVSTITDEEFSQIYNKDLEVFNDDFIQKLKEKYENLGYNFILPIADKQWGRWRWGYS 225

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
           ++N      + IV +  N +  ++ +R     E     +  PK   Y   Y +       
Sbjct: 226 IKNKARLQTDIIVSQSKNGISLYKKQRP----ELDDLPTKKPKTIFYKPEYSSG------ 275

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                       +G+E+++N  GEK     KPE L+   +  +T   DI+LD   GSGT+
Sbjct: 276 ------------NGTEQMKNLFGEKAFKNPKPEELIQDFITITTNENDIVLDYHLGSGTT 323

Query: 238 GAVAKKLRRSFIGIEMKQDYID-IATKRIASV 268
            AVA K+ R +IGIE + DYI+ +A +R+  V
Sbjct: 324 AAVAHKMNRQYIGIE-QMDYIETLAVERMKKV 354



 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 48/174 (27%), Gaps = 11/174 (6%)

Query: 42  LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
           LI+ DPPY        Y       D+    ++       +  F +  LL  + +L  +G 
Sbjct: 3   LIYIDPPY--------YFVKKKPQDSFG--YNTNFKLSTWLTFMKNRLLIAKELLTDDGI 52

Query: 102 LWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
           + +         +  +L  +  F      +    N   N     F   HE  +  + +  
Sbjct: 53  IVISIDDDGNAYLKILLDEIFGFENFIGNLPTIMNLKGNNDEYAFAGTHEYTLVFAKNKD 112

Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
              +           E  +          +       +D  +  P      L+ 
Sbjct: 113 KSTFYEFPIDEDNFLEKWEEDEIGFYKKGAPMRATGTEDKREDRPEMFYPFLVK 166


>gi|332968528|gb|EGK07589.1| site-specific DNA-methyltransferase (adenine-specific) [Kingella
           kingae ATCC 23330]
          Length = 586

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN----- 197
              +N    +           Y  N + +       +      IP     +   +     
Sbjct: 322 NHSKNNKGIVFQHENEDVTGFYILNGEQMVFWENTYRNIDGNFIPATIIIDVWTDISFTG 381

Query: 198 ---KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
              + G KL   +KPE L+ RI+  +T   DI+LD   GSGT+ AVA K+ R +IGIE +
Sbjct: 382 IASEGGVKLKNGKKPEKLIKRIIELTTNENDIVLDYHLGSGTTAAVAHKMNRQYIGIE-Q 440

Query: 255 QDYID-IATKRIASV 268
            DYI+ +A +R+  V
Sbjct: 441 MDYIETLAVERLKKV 455



 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 75/229 (32%), Gaps = 42/229 (18%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       V LI+ D P+N + +  +Y              DKF +
Sbjct: 97  NLIIKGNNLIALHSLAKQFKGKVKLIYIDVPFNTENDSFVY-------------NDKF-T 142

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL---------------- 121
              +  F +  L   +++L  +G + V         +  +L  +                
Sbjct: 143 HSTWLTFMKNRLEIAKKLLSDDGIICVHTDNTEAAYVQVLLDEIFIRNNFLNHITITTNA 202

Query: 122 --NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
              F      ++  SN +  +   R  +    L  +    +   Y         +N    
Sbjct: 203 ASGFKATGQTIFSTSNHIFVYARNRVNSQLNKLYLSKQYDENYKYFLLNPDEHFSNWKFS 262

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
              + L      SE+       K H T+  + LL +I   + K  D + 
Sbjct: 263 TILEQLSIELKLSEKEM-----KSHITE--QELLFKISEFADKNRDRVF 304


>gi|108563739|ref|YP_628055.1| adenine-specific DNA methylase [Helicobacter pylori HPAG1]
 gi|107837512|gb|ABF85381.1| adenine-specific DNA methylase [Helicobacter pylori HPAG1]
          Length = 367

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 44/70 (62%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +  KL  T KPE LL RIL  STK  D++ D F GSGT+ AVA K++R +IG+EM + + 
Sbjct: 184 NNVKLFDTPKPEVLLQRILEISTKENDLVCDFFAGSGTTCAVAHKMKRKYIGVEMGEHFE 243

Query: 259 DIATKRIASV 268
            +   R+  V
Sbjct: 244 RVILPRLKKV 253


>gi|115522589|ref|YP_779500.1| DNA methylase N-4/N-6 domain-containing protein [Rhodopseudomonas
           palustris BisA53]
 gi|115516536|gb|ABJ04520.1| DNA methylase N-4/N-6 domain protein [Rhodopseudomonas palustris
           BisA53]
          Length = 596

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 47/77 (61%)

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           S  L N+ G +    +KPEAL+ R L  ++ PGD++LD F GSGT+GAVA K+ R +I +
Sbjct: 330 SNNLHNEGGIEFPKGKKPEALIKRCLDLASDPGDLVLDSFAGSGTTGAVAHKMGRRWIMV 389

Query: 252 EMKQDYIDIATKRIASV 268
           E+ +  +     RI  +
Sbjct: 390 ELGEHAVTHIVPRIKRI 406



 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 45/106 (42%), Gaps = 17/106 (16%)

Query: 19  WKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + + +I+G+++  L+ L       +  ++ DPP+N Q                 + ++  
Sbjct: 45  FDNILIQGDNLLALKALEEAYAGRIKCVYIDPPFNTQ--------------QAFEHYEDG 90

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
                + +  R  L    ++++ +GTL+V    + +  I T+L  +
Sbjct: 91  LEHSLWLSLIRNRLELIHKLMRDDGTLFVHIDDNELGYIITVLDEI 136


>gi|323972445|gb|EGB67652.1| DNA methylase [Escherichia coli TA007]
          Length = 350

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 17/130 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAY 81
           +I  + +  ++ LP  S+DLI  DPPY                    + WD ++   E Y
Sbjct: 12  LINSDCLHFIQSLPDDSIDLIVTDPPYF---------------KVKPNGWDNQWKGDEDY 56

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N  
Sbjct: 57  LKWLDHCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAKPSGRWNGC 115

Query: 142 GRRFQNAHET 151
            +    A+  
Sbjct: 116 NKESLRAYFP 125



 Score = 77.3 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 44/83 (53%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 265 VPYTDVWTHKPVQFYPGKHPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  +G+E++ +  +   K ++ +
Sbjct: 325 RRALGVELESERFNQTVKEVSEL 347


>gi|147678479|ref|YP_001212694.1| DNA modification methylase [Pelotomaculum thermopropionicum SI]
 gi|146274576|dbj|BAF60325.1| DNA modification methylase [Pelotomaculum thermopropionicum SI]
          Length = 368

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 38/65 (58%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
               HPT KP  L++ +    T PG ++LDPF GSG++   A +   +FI IE + DY++
Sbjct: 300 NRNTHPTVKPTGLMAWLCRLITPPGGLVLDPFAGSGSTAVAAIREGFNFIAIERESDYVE 359

Query: 260 IATKR 264
           IA  R
Sbjct: 360 IAKSR 364



 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/211 (21%), Positives = 72/211 (34%), Gaps = 13/211 (6%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR-PDHSLVDAVTDSWDKFSS 77
           + + I +G+S  VL+ LP  SVD +  DPPY L     +     H L D       K   
Sbjct: 4   YLNTITQGDSYEVLKDLPENSVDAVVTDPPYGLSKEPDIVEVLTHWLDDQEYKHLSKGFM 63

Query: 78  FEAYDAF--TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
            + +D+F  + +      RVLKP G +           +   L+   F I + I W    
Sbjct: 64  GKDWDSFVPSPSLWREVYRVLKPGGHVLCFAGTRTQDIMTIALRLAGFEIRDVIEWLYLT 123

Query: 136 PMPNFRG-----RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
             P          +   A + +I           T N    +A  E       ++    +
Sbjct: 124 GFPKNMDVSKQFDKLAGAEQEIIGVKYKRNGTNGTNNEIFRQAPRETT-----YITAPVT 178

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSST 221
              R     G  L P  +P  L  + L  + 
Sbjct: 179 ELARKWYGWGTALKPAHEPIILARKPLEKTV 209


>gi|257058544|ref|YP_003136432.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 8802]
 gi|256588710|gb|ACU99596.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 8802]
          Length = 442

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 57/328 (17%), Positives = 107/328 (32%), Gaps = 75/328 (22%)

Query: 21  DKIIKGNSISVL------EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT----- 69
           +++  G+++ +L        +    V LI+ DPP+  Q   Q      +  D +      
Sbjct: 61  NQLYYGDNLPILLSLLQDRNIQGN-VKLIYIDPPFATQRIFQSRSQTDAYCDLLQGSNYL 119

Query: 70  ---------------DSWDKFSSFEAYDAF--------------TRAWLLACRRVLKPN- 99
                          D    +   +   AF               R W+   +   K   
Sbjct: 120 EFIRKRLIILRELLADDGSIYVHLDENMAFYVKLILDEVFGQKNFRNWITRKKCNPKNYT 179

Query: 100 ----GTL------------WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
               G +            +     +  +     ++   +         K  P+     R
Sbjct: 180 RKTYGNISDFILFYTKSDNYTWNRPYEQWTDEKAIKEYPYIEAQTGRRYKKVPIHAPGIR 239

Query: 144 R------FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP---------I 188
                  ++N +            K    +       +++   R    +          I
Sbjct: 240 NGKTGEPWRNMNPPPGKHWQFSPEKLDEMDKKGEIYWSKNGNPRRKIYLDKSQGIPVQDI 299

Query: 189 CSGSERLRNKDGE-KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
               +   N++ +   +PT+K   LLSRI+ +S+   D++LD F GSGT+ AVA  L R 
Sbjct: 300 WVDYKDAHNQNIKITGYPTEKNPDLLSRIIKASSNKHDLVLDCFSGSGTTLAVASDLERR 359

Query: 248 FIGIEMKQDYIDIATKRIAS-VQPLGNI 274
           +IGI+   + I    KR A   +P+G+ 
Sbjct: 360 WIGIDNSSEAIVTTLKRFAQGCEPMGDF 387


>gi|303239108|ref|ZP_07325638.1| ParB domain protein nuclease [Acetivibrio cellulolyticus CD2]
 gi|302593446|gb|EFL63164.1| ParB domain protein nuclease [Acetivibrio cellulolyticus CD2]
          Length = 442

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 53/305 (17%), Positives = 93/305 (30%), Gaps = 62/305 (20%)

Query: 20  KDKIIKGNS---ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G S     V+  +  K   L  A PP                V  + D  +K  
Sbjct: 168 RHRLMCGYSGSQEDVIRLMDGKHAQLCVASPP----------------VGCIKDYEEK-- 209

Query: 77  SFEAYDAFTRAWLLACRRV----------LKPNGTLW--VIGSYHNIFRIGTMLQNLNFW 124
             +A+    R  +    R           L   G+ +      Y          + +   
Sbjct: 210 GIDAWFEAMRPAIGNICRHSDIAVISIDDLMVTGSQFIEPTSDYSIQLFRENGFRPIWKR 269

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA----------------KGYTFNY 168
           I          P  +    + Q   E +I  + + +                   Y F  
Sbjct: 270 IWQKQGISSGMPSYHTVSNKPQPQSEDIIAFTMNGETVECAVDEYAGVYGFAGHAYRFVK 329

Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
              K   +    +  W I +    E           P   P  L  R +   +  G I+L
Sbjct: 330 RLTKDERKAWGFKKIWQIAVVQKRE---------GQPATFPVELPWRCIKLHSDRGGIVL 380

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
           +PF G+GT     ++  R    +E +  Y+D+A KR   VQ  G  +   L   R   ++
Sbjct: 381 EPFSGNGTVIIACEQTDRVCHAMEKESLYVDLAVKRW--VQFTGGEDEVFLL--RGNDKI 436

Query: 289 AFNLL 293
            ++ L
Sbjct: 437 PYSEL 441


>gi|219883014|ref|YP_002478178.1| DNA methylase N-4/N-6 domain protein [Arthrobacter chlorophenolicus
           A6]
 gi|219862020|gb|ACL42361.1| DNA methylase N-4/N-6 domain protein [Arthrobacter chlorophenolicus
           A6]
          Length = 374

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/66 (48%), Positives = 46/66 (69%), Gaps = 1/66 (1%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI-DIAT 262
             T KPEALL R++ ++T+PGD +LD F GSGT+ AVA+KL R++IG+E+  + I D   
Sbjct: 279 FDTPKPEALLERLIAAATEPGDTVLDCFAGSGTTLAVAQKLGRNWIGVELNAETIADYIA 338

Query: 263 KRIASV 268
            RI  +
Sbjct: 339 PRIDGI 344



 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 39/126 (30%), Gaps = 15/126 (11%)

Query: 38  KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK 97
            +V + + DPPYN       Y                 S  + + A     L   R  L 
Sbjct: 20  GTVKMAYLDPPYNTGRKFNQYS--------------DSSPLKDWLAMLERTLTGVRDTLT 65

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
            +G+++V      I R+  ++ ++         +  +     +F      +  + ++  +
Sbjct: 66  EDGSIFVHLDDQYIHRVRCIMDDVFGDRNYVGTMIWEKKNRGSFLHAHLADVTDHILIYA 125

Query: 157 PSPKAK 162
                 
Sbjct: 126 KDKSKM 131


>gi|229846088|ref|ZP_04466200.1| putative type III restriction/modification system modification
           methylase [Haemophilus influenzae 7P49H1]
 gi|229811092|gb|EEP46809.1| putative type III restriction/modification system modification
           methylase [Haemophilus influenzae 7P49H1]
          Length = 581

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/80 (43%), Positives = 52/80 (65%), Gaps = 2/80 (2%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           +G+E+++N  GEK+    KPE L+   +  +T   DIILD   GSGT+ AVA K+ R +I
Sbjct: 365 NGTEQMKNLFGEKVFKNPKPEELIQDFITITTNENDIILDYHLGSGTTAAVAHKMNRQYI 424

Query: 250 GIEMKQDYID-IATKRIASV 268
           GIE + DYI+ +A +R+  V
Sbjct: 425 GIE-QMDYIETLAVERLKKV 443



 Score = 50.0 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 71/214 (33%), Gaps = 21/214 (9%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       V LI+ DPPY        Y       D+    ++    
Sbjct: 89  NLIIKGNNLIALHSLAKQFKGKVKLIYIDPPY--------YFVKKKPQDSFG--YNTNFK 138

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNP 136
              +  F +  LL  + +L  +G + +         +  +L  +  F      +    N 
Sbjct: 139 LSTWLTFMKNRLLIAKELLTDDGIIVISIDDDGNAYLKILLDEIFGFENFIGNLPTIMNL 198

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
             N     F   HE  +  + +     +       +   ++ +M  DW        ++  
Sbjct: 199 KGNNDEYAFSGTHEYTLVFAKNKDKSTFY------EFPIDEYEMLQDWEEDNIGFYKQGA 252

Query: 197 NKDGEKLH-PTQKPEALLSRILVSSTKPGDIILD 229
           N     ++ P +K   L   I + S     +  D
Sbjct: 253 NLKSTGVNAPREKRPNLFFPIFIDSNNKVYVTDD 286


>gi|300087210|ref|YP_003757732.1| DNA methylase N-4/N-6 domain-containing protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299526943|gb|ADJ25411.1| DNA methylase N-4/N-6 domain protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 326

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 4/117 (3%)

Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWL---IPICSGSERLRNKDGEKLHPTQKPEA 211
            +P+    GYT      +A + +     +W+   + +       R+   +K HP   P A
Sbjct: 20  NTPNLINIGYT-RTCQCEANHINCMPAKEWMKSQLGVWQFFYEGRDIRDKKTHPATFPIA 78

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           L  + +   T  G+++LDPF GSGT+   A+ L R+ +G ++KQ+Y+ +   R+  +
Sbjct: 79  LAKKCISLFTHEGELVLDPFVGSGTTLIAARDLNRNSVGFDLKQEYVSLCESRLLQI 135



 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 56/183 (30%), Gaps = 26/183 (14%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPY---------NLQLNGQLYRPDH--SLVDAVTDSW 72
           I  ++ ++ + L  ++V LI   PPY         N    G   + D    +     D+ 
Sbjct: 146 ICDDARNIDKYLAPETVSLIVTSPPYANLLNRKRLNKSRRGDTRQNDQYLKVEQYSQDTR 205

Query: 73  D-KFSSFEAYDAFTRAWLLACRRVLKPNGTL--------WVIGSYHNIFRIGTMLQNLNF 123
           D      E Y            ++L+P G          W          +   L+   +
Sbjct: 206 DLGTMDIEQYSQAMGDIFEPLLKLLRPKGHCIINVPDMWWENKRITIHIALVEELRKRGY 265

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
            + N I+W ++N +       + N + T            Y  ++      N D   +  
Sbjct: 266 ELRNIIIWDRTNIVNKIGIFGWPNNYIT------MGTTFEYLLDFWRPPEENSDGNGKRG 319

Query: 184 WLI 186
             I
Sbjct: 320 KRI 322


>gi|315637799|ref|ZP_07892991.1| type III R-M system methyltransferase [Campylobacter upsaliensis
           JV21]
 gi|315482142|gb|EFU72754.1| type III R-M system methyltransferase [Campylobacter upsaliensis
           JV21]
          Length = 670

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 2/75 (2%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L   D   L  T KPEAL+ RI+  ST   D+++D F GSGT+ AVA K++R FIGIE +
Sbjct: 459 LFENDNTTLFATPKPEALIKRIIEISTNENDLVMDFFAGSGTTLAVAHKMKRRFIGIE-Q 517

Query: 255 QDYID-IATKRIASV 268
            DYI+ I  +R+  V
Sbjct: 518 MDYIESITKERLKKV 532



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 51/142 (35%), Gaps = 18/142 (12%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + +IKGN++  L  L    A  V LI+ DPPYN   +   Y              D F +
Sbjct: 163 NLLIKGNNLLALHSLKKKFANKVKLIYIDPPYNTGNDSFNY-------------NDNF-N 208

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNP 136
              +  F +  L   R  L  +G +++    +    +  +   +         V R++  
Sbjct: 209 HSTWLTFMKNRLEIAREFLSDDGVIFIQCDDNEQAYLKVLCDEIFGRDNFVGCVVRQTRS 268

Query: 137 MPNFRGRRFQNAHETLIWASPS 158
              F        H+ ++  + +
Sbjct: 269 GGGFGTSDIGITHDYVLVYAKN 290


>gi|127457|sp|P00473|MTH2_HAEPH RecName: Full=Modification methylase HhaII; Short=M.HhaII; AltName:
           Full=Adenine-specific methyltransferase HhaII
 gi|148898|gb|AAA24963.1| methyltransferase [Haemophilus haemolyticus]
          Length = 228

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 95/235 (40%), Gaps = 31/235 (13%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K+K + G  I + + +P K+V + F DP Y   L+   Y  +           ++ +  +
Sbjct: 14  KNK-MNG--IDLFKLIPDKAVKIAFFDPQYRGVLDKMSYGNEGKGRGK-----ERAALPQ 65

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGS-YHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
             D   + ++    RVL PNG L++    +H +  +   L+N     + D++      + 
Sbjct: 66  MTDEIIQQFINEFERVLLPNGYLFLWVDKFHLVEGVKPWLENTPSLSVVDMLTWDKQKIG 125

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
              G R +   E L+     PK    T+                       +  +    K
Sbjct: 126 --MGYRTRRRSEYLVVIQKEPKKAKITWTLH--------------------NIPDVWAEK 163

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
              K H   KP  +  ++++++T+ GD+ILDP  G  +     K+  R+FIG ++
Sbjct: 164 LQSKPHTHSKPIEMQKQLILATTQEGDLILDPASGGYSVFECCKQTNRNFIGCDL 218


>gi|193064850|ref|ZP_03045927.1| DNA methylase [Escherichia coli E22]
 gi|192927535|gb|EDV82152.1| DNA methylase [Escherichia coli E22]
          Length = 350

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 81/214 (37%), Gaps = 28/214 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           +++  +S+  +  LP  S+DLI  DPPY                    + WD ++   E 
Sbjct: 11  ELVNADSLQYIATLPDNSIDLIVTDPPYF---------------KVKPNGWDNQWKGDED 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N 
Sbjct: 56  YLRWLDMCLAQFWRVLKPAGSLYLFSGHRLAADIEIMMRE-RFNVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
             +    ++          +     +   +   A +  +++   + P+ S     R   G
Sbjct: 115 CNKESLRSYFPATERILFAEHYQGPYKPKSDGYAEKGSELKQHVMTPLISYFRDAREALG 174

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
                      + S+ +  +T   +++   F GS
Sbjct: 175 -----------ITSKQIADATGKKNMVSHWFSGS 197



 Score = 79.3 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 46/83 (55%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S+KPGD++ D F GSG++  +A +L 
Sbjct: 265 VPYTDVWTHKTVQFYPGKHPCEKPADMLRQIINASSKPGDVVADFFMGSGSTVKIALELG 324

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  IG+E+++D      + I ++
Sbjct: 325 RQAIGVELEEDRFSQTVEEIRAL 347


>gi|302668809|ref|YP_003832634.1| DNA modification methylase [Butyrivibrio proteoclasticus B316]
 gi|302397149|gb|ADL36052.1| DNA modification methylase [Butyrivibrio proteoclasticus B316]
          Length = 309

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 96/254 (37%), Gaps = 27/254 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +I+G+    L  +   + D I  D P                  A +     F+++  + 
Sbjct: 62  VIEGDGRD-LSIINNGAADCIITDHP-------------WEDTKATSGGNKNFANYSCF- 106

Query: 83  AFTRAWLLACRRVLKPNGTLWVI------GSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            +T+       RVLK    L  I       +Y  ++ +  M +   F     + W+K   
Sbjct: 107 KYTQKDFDEKARVLKDGSFLVEIIPAESATNYEYLYELKQMAKRAGFEYYACVPWKKGTF 166

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS-DWLIPICSGSERL 195
           + N  GR+ +N  + +I++    +A             N    M   + ++P     + +
Sbjct: 167 VSN-TGRKAKNTEDIMIFSKGKARALRPDKQRGLDPNGNPTRFMSGANGMLPTMFDVQAV 225

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK- 254
             KD      ++KP  L  ++L   TK  +++LD F GSG  G      +R  I IE+  
Sbjct: 226 PRKDQIAQ--SEKPVPLFEQLLDYLTKENELVLDQFAGSGALGEACLNKKRKSILIELDS 283

Query: 255 QDYIDIATKRIASV 268
               +IA  R+ + 
Sbjct: 284 MKAANIA-NRLNAT 296


>gi|270634778|ref|ZP_06222031.1| methylase [Haemophilus influenzae HK1212]
 gi|270317489|gb|EFA28974.1| methylase [Haemophilus influenzae HK1212]
          Length = 84

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 50/84 (59%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           +I      E+   K+  KLHPTQKP A+L R++   T  GD+++DP  GS ++   A++L
Sbjct: 1   MIKNWFEWEKDNRKEIPKLHPTQKPIAVLKRLIEIFTDEGDVVIDPVAGSASTLRAAREL 60

Query: 245 RRSFIGIEMKQDYIDIATKRIASV 268
            R   G E+K+D   IA +++ ++
Sbjct: 61  NRPSYGFEIKKDSCKIAKEQMLNI 84


>gi|213619015|ref|ZP_03372841.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 84

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 14/82 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G++++ L+KLP++S+DLIFADPPYN+  +           D + +SWD+ S    +
Sbjct: 16  KIIHGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDEAS----F 61

Query: 82  DAFTRAWLLACRRVLKPNGTLW 103
            A+    +  C RVLK +GT++
Sbjct: 62  LAWLYECIDECHRVLKKHGTMY 83


>gi|167908523|ref|ZP_02495728.1| phage-encoded modification methylase [Burkholderia pseudomallei
           NCTC 13177]
          Length = 112

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 8/110 (7%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVD-----AVTDSWDKFSS 77
            +++++   LP  S+D++F DPPY    L  + +   P    ++       TD       
Sbjct: 1   MDALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSTKYINSGTKTVYTDFESDNMD 60

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
             A+  +  AWL  CRR LKP G L     +  +  +  ++Q     +  
Sbjct: 61  QRAWAFWCHAWLSECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILRG 110


>gi|240118154|ref|ZP_04732216.1| putative type III restriction/modification system modification
           methylase [Neisseria gonorrhoeae PID1]
          Length = 492

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 27/212 (12%)

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT--LWVIGSYHN-IFRIGTM 117
            ++ V  +TD        +  + F   ++   +   +  G   +  I       +R G  
Sbjct: 166 KNNTVSTITDEEFSQIYNKDLEVFNDDFIQKLKEKYENLGYNFILPIADKQWGRWRWGYS 225

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
           ++N      + IV +  N +  ++ +R     E     +  PK   Y   Y +       
Sbjct: 226 IKNKARLQTDIIVSQSKNGISLYKKQRP----ELDDLPTKKPKTIFYKPEYSSG------ 275

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                       +G+E+++N  GEK     KPE L+   +  +T   DI+LD   GSGT+
Sbjct: 276 ------------NGTEQMKNLFGEKAFKNPKPEELIQDFITITTNENDIVLDYHLGSGTT 323

Query: 238 GAVAKKLRRSFIGIEMKQDYID-IATKRIASV 268
            AVA K+ R +IGIE + DYI+ +A +R+  V
Sbjct: 324 AAVAHKMNRQYIGIE-QMDYIETLAVERMKKV 354



 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 48/174 (27%), Gaps = 11/174 (6%)

Query: 42  LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
           LI+ DPPY        Y       D+    ++       +  F +  LL  + +L  +G 
Sbjct: 3   LIYIDPPY--------YFVKKKPQDSFG--YNTNFKLSTWLTFMKNRLLIAKELLTDDGI 52

Query: 102 LWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
           + +         +  +L  +  F      +    N   N     F   HE  +  + +  
Sbjct: 53  IVISIDDDGNAYLKILLDEIFGFENFIGNLPTIMNLKGNNDEYAFAGTHEYTLVFAKNKD 112

Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
              +           E  +          +       +D  +  P      L+ 
Sbjct: 113 KSTFYEFPIDEDNFLEKWEEDEIGFYKKGAPMRATGTEDKREDRPEMFYPFLVK 166


>gi|325294788|ref|YP_004281302.1| DNA methylase N-4/N-6 domain protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065236|gb|ADY73243.1| DNA methylase N-4/N-6 domain protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 860

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 53/304 (17%), Positives = 98/304 (32%), Gaps = 70/304 (23%)

Query: 22  KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           ++IK  +   L  +     + +  I+ DPP+N     +    D+       DS       
Sbjct: 439 RLIKSENWQALNTILPKHKEKIQTIYIDPPFN-----KEQEADYYYNVNYKDS------- 486

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--ILNDIVWRKSNP 136
             +       +   + +L   G+++V   Y+    +  +L  +       N+I  +++  
Sbjct: 487 -TWITMLENRISLAKELLNEKGSIFVRCDYNGNMYVRMLLNEIFGKENFRNEIDIKRNQS 545

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTF---------------------NYDALKAAN 175
           +P           E L     + K                           N   +    
Sbjct: 546 LPKTGDVNLIEETENLYVFGKTNKFYFINQLMDREKPKWVDLGTRPSDVEDNPPRVVEGK 605

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKL-------------------------------H 204
           E    +           + +  K   K+                                
Sbjct: 606 EFYPPKYRRWAYSQDNIDEMYAKGRLKIENGKIKILLDKRKLGSNWTDIPGYSTVPTWGF 665

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            T+  E LL R++ S+    DIILD F GSGT+ AVA KL+R +IG+E+ + +  +   R
Sbjct: 666 KTENSEVLLKRVIQSTLNERDIILDFFLGSGTTTAVAHKLKRKWIGVELGEHFYSVILPR 725

Query: 265 IASV 268
           +  V
Sbjct: 726 MKKV 729


>gi|297565036|ref|YP_003684008.1| DNA methylase N-4/N-6 domain-containing protein [Meiothermus
           silvanus DSM 9946]
 gi|296849485|gb|ADH62500.1| DNA methylase N-4/N-6 domain protein [Meiothermus silvanus DSM
           9946]
          Length = 361

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 80/219 (36%), Gaps = 31/219 (14%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N + + +   + G++   L  L   S+DLI   PPY  +++    +              
Sbjct: 13  NPLRQSETTFLLGDARD-LSALEENSIDLIITSPPYWKKIDYLHPKQIG----------- 60

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN--------IFRIGTMLQNLNFWI 125
           + ++ + Y     A L    RVLKP+G+ +V  +             R     Q+  + I
Sbjct: 61  QEATPKGYIRSLMACLKQWERVLKPHGSAFVNIADTYVNRDLAGIPERFMLAAQDHGWLI 120

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
            + IVW K   +P  +  R  N +E +   S   K + YT  Y             + W 
Sbjct: 121 QHRIVWVKPYGIPESKPYRLANRYEFIYHLSR--KREIYTNLYGYAAKFGNGFNPGNVW- 177

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
                   +LR +  +  H    P+ L+ R+L  +    
Sbjct: 178 --------KLRAERSKDPHLAPFPDELVERVLTFAAPER 208



 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/27 (55%), Positives = 20/27 (74%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           ILDPF GSGT+  VA+KL    IG+++
Sbjct: 320 ILDPFAGSGTTLKVARKLGFRAIGLDL 346


>gi|114565597|ref|YP_752751.1| DNA modification methylase-like protein [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|114336532|gb|ABI67380.1| DNA modification methylase-like protein [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 481

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 1/98 (1%)

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
            NE      +  IP  +  +       E LHP + PE L+   +   TKPGD + DP  G
Sbjct: 213 PNELSIFNGNIEIPSWTIPKSPPRSSIEVLHPAKFPETLVEEFIKLFTKPGDNVFDPMAG 272

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA-SVQP 270
           +G++   A +  R+ IG+E+  ++  I   R+   +QP
Sbjct: 273 TGSTLIAALRNERNAIGVELSPEWASIGQNRLNYELQP 310



 Score = 37.3 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 7/86 (8%)

Query: 20  KDKIIKGNS--ISVLEKLPAKSVDLIFADPPY-----NLQLNGQLYRPDHSLVDAVTDSW 72
           K K+++G++  +  + +L     D +   PPY     N     Q  R + +L    +   
Sbjct: 319 KAKMLQGDATNLDAIGQLNGVYFDYVVTSPPYWSMLTNPGSENQRNRRNKNLPLTYSKDQ 378

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKP 98
           +   + + Y+ F    +     V+K 
Sbjct: 379 NDLGNIQDYNDFLDKLVNVYDDVVKK 404


>gi|323963718|gb|EGB59223.1| DNA methylase [Escherichia coli M863]
 gi|327252667|gb|EGE64321.1| DNA methylase family protein [Escherichia coli STEC_7v]
          Length = 361

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 17/131 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  ++ L   SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINTDCLEFIQTLSENSVDLIVTDPPYF---------------KVKPEGWDNQWKGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHET 151
             +    A+  
Sbjct: 115 CNKESLRAYFP 125



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 39/80 (48%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG +   A  L 
Sbjct: 265 VPYTDVWTHKPVQYYPGKHPCEKPADMLRQIISASSRPGDVVADFFMGSGATIKAAMGLG 324

Query: 246 RSFIGIEMKQDYIDIATKRI 265
           R  IG+E++    +     I
Sbjct: 325 RRTIGVELESGRFEQTVGEI 344


>gi|166363574|ref|YP_001655847.1| DNA methyltransferase [Microcystis aeruginosa NIES-843]
 gi|166085947|dbj|BAG00655.1| DNA methyltransferase [Microcystis aeruginosa NIES-843]
          Length = 565

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 16/141 (11%)

Query: 135 NPMPNFRGRRFQNAHETL--------IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
                ++GR +  + E +        ++   +     Y       +     +Q   D + 
Sbjct: 246 YGTYPYKGRYWAYSKENMEKFMAEGRLYFPKNGGPPRYI--RYLDEMPGVTLQNNWDDIF 303

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P+ S ++          +PTQKPEALL RI+ +S+  GD+ILD + G GT+ AVA++L R
Sbjct: 304 PLTSSAKERLG------YPTQKPEALLERIIKASSNKGDVILDAYCGCGTTIAVAERLER 357

Query: 247 SFIGIEMKQDYIDIATKRIAS 267
           ++IGI++    I +  KR+  
Sbjct: 358 NWIGIDITYQSISLMLKRLED 378



 Score = 75.8 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 75/204 (36%), Gaps = 50/204 (24%)

Query: 21  DKIIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNG-----QLYRPDHSLVDAVTDSW-- 72
           +K+  G+++ VL K +  +S+DL + DPP+N + N       L + D +   A  D+W  
Sbjct: 11  NKLYYGDNLEVLRKYIKDESIDLCYIDPPFNSKRNYNQIYNNLGKEDQAQAQAFVDTWTW 70

Query: 73  ----------------DKFS-----------------SFEAYDAFTRAWLLACRRVLKPN 99
                            KF+                 S  AY       ++   RVLK  
Sbjct: 71  DNHANEALEEIQSNYQGKFTSQTIDLIDGLTKVLGKGSLLAYLVSMTLRIVEIHRVLKST 130

Query: 100 GTLWVIGSYHNIFRIGTMLQNL----NFWILNDIVWRKSNPMPNFRGRRFQ--NAHETLI 153
           G+ ++         +  +L  +         N+I W+++    + +  + Q  N  + ++
Sbjct: 131 GSFYLHCDPTASHYLKIVLDTVFCPQGGDFKNEISWKRTTAHNDAKQGQKQYGNIRDVIL 190

Query: 154 WASPSPKAKGYTFNYDALKAANED 177
           + +    +  + +N      + E 
Sbjct: 191 FYTK---SNRWNWNCQYSSYSEEY 211


>gi|68535597|ref|YP_250302.1| putative DNA restriction-modification system, DNA methylase
           [Corynebacterium jeikeium K411]
 gi|68263196|emb|CAI36684.1| putative DNA restriction-modification system, DNA methylase
           [Corynebacterium jeikeium K411]
          Length = 614

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/113 (33%), Positives = 54/113 (47%), Gaps = 10/113 (8%)

Query: 184 WLIPICSGSERLRNKDG-EKLHP-------TQKPEALLSRILVSSTKPGDIILDPFFGSG 235
           W      G  +   +D   K+ P       T KPE LL RI+  +T PGDI+LD F GSG
Sbjct: 318 WWTADEVGHNQEAKRDHLNKMFPELEDTFATPKPERLLERIIHIATNPGDIVLDVFAGSG 377

Query: 236 TSGAVAKKLRRSFIGIEMKQD-YIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
           T+ AVA+K+ R ++  E+ +D +      R+       N    V   K  EP+
Sbjct: 378 TTAAVAQKMGRRWLSCELVEDTFRRFTRPRLEKAIN-DNDPGGVTFTKDREPK 429



 Score = 50.0 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 57/166 (34%), Gaps = 24/166 (14%)

Query: 26  GNSISVLEKLPA------KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           G+ +  L ++P         V  I+ DPP+N                    +++      
Sbjct: 84  GDVLEALTRVPELREKYLGKVKCIYIDPPFNTA--------------QTFANYEDNLEHS 129

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPM 137
            +    R  L+  R++L  +G++WV        R+  ++  +      + ++VW K    
Sbjct: 130 VWLTMMRDRLIHLRKLLSADGSIWVHLDDVENHRMRVLMDEVFGAGSFVGEMVWEKDKGR 189

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
            N  G     A++ ++  +P         N     A+ +      D
Sbjct: 190 RNDTG--ISGANDFILVYAPMGNQWKNARNLLPRLASQDARYQNPD 233


>gi|313667116|gb|ADR73007.1| M.BsiWI [Bacillus sp. NEBM184]
          Length = 353

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 43/85 (50%)

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
                  P         +K  +  H    PE L    ++++  P  I+LDPF G+GT+  
Sbjct: 264 YHPKGSKPSDVWDIIPEDKQRKDNHFAPYPEDLCKIPILATCPPDGIVLDPFAGTGTTNK 323

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKR 264
           VAK+  R  IGIE+ ++Y+++A +R
Sbjct: 324 VAKQNGRKSIGIEISEEYLEVAEER 348



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 65/163 (39%), Gaps = 30/163 (18%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           + G+++ VL+++P  S+D     PPY  +                  S       + Y  
Sbjct: 26  LCGDALQVLKEIPDDSIDFCMTSPPYWQKRKY---------------SGGGIGLEKDYRD 70

Query: 84  FTRAWL---LACRRVLKPNGTLW-VIGSYHN-------IFRIGTMLQNLNFWI-LNDIVW 131
           F +  L       RVLKP G+ W  +G  +         +R+   L +   WI  ND++W
Sbjct: 71  FIKNLLLICKEIYRVLKPTGSFWLNLGDSYKDKKLLGIPWRVAIALMDEQNWILRNDVIW 130

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
            K     +    +  NAHE +     +   K Y ++ DA+++ 
Sbjct: 131 NKVKGGMDNSKDKLGNAHEHIFHFVKN---KKYYYDVDAIRSK 170


>gi|206895915|ref|YP_002246966.1| modification methylase, type III R/M system [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738532|gb|ACI17610.1| modification methylase, type III R/M system [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 1129

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 60/330 (18%), Positives = 108/330 (32%), Gaps = 92/330 (27%)

Query: 23  IIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           ++K  +   L  L  K    V  I+ DPP+N     +    D        DS        
Sbjct: 578 LVKSENFQALNTLLGKYKAKVQTIYIDPPFN-----KEQDADFLYNVKYKDS-------- 624

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMP 138
            + +     L   R +L   G+++V   Y+  + +  ++  +       + +        
Sbjct: 625 TWASMLENRLRLGREMLSERGSIFVRCDYNGNWIVRPLMNEIFGAENFRNEIVISRISKQ 684

Query: 139 NFRGRRFQNAHETLI------------------------WASPSPKAKG---YTFNYDAL 171
           + + +RF  A ++L                         W +   + KG   Y F Y   
Sbjct: 685 DPKVKRFNTATDSLFFYSKTIGSPFNLLFKKLAKNKEERWHAMDSQGKGQPLYIFGYLLS 744

Query: 172 KAANEDVQMRSDWLI---------------------PICSGSERLRNKDGEKL------- 203
              N       + +                       I  G    +N++  K+       
Sbjct: 745 PPNNRHWTYGQEKIKQMEREKTIRLKCKKCGYIHTSGIWKGCPECKNREDVKVEYLLAPT 804

Query: 204 --------------------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
                                 T+  E LL R++ S++  GD+++D F GSGT+ AVA K
Sbjct: 805 EVKQIDSNWTDVPGYSFVTDFATENSEILLKRVIESTSNRGDLVMDFFLGSGTTTAVAHK 864

Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           L R +IG+EM + +  +   R+  V     
Sbjct: 865 LGRKWIGVEMGEHFWTVVLPRMKKVLAYDK 894


>gi|120601920|ref|YP_966320.1| nuclease [Desulfovibrio vulgaris DP4]
 gi|120562149|gb|ABM27893.1| ParB domain protein nuclease [Desulfovibrio vulgaris DP4]
          Length = 684

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 57/142 (40%), Gaps = 7/142 (4%)

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
            + I    ++  P        +  + L + +         +        + D +  + W 
Sbjct: 537 FDWITITGNDAAPFSGKVYSMDVDKDLHYVADGLVTHNCWYAVKGQAHWSGDRKQVTVWN 596

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           I         + +D E +H TQKP   + R + +++ PG  + +PF GSGT+   A+   
Sbjct: 597 IA-------SKGQDAETIHGTQKPVECMKRPMENNSSPGQAVYEPFSGSGTTIMAAELTG 649

Query: 246 RSFIGIEMKQDYIDIATKRIAS 267
           R    +E+   Y+D+A  R  +
Sbjct: 650 RCCYAMELNPAYVDVAVTRWEN 671



 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 46/145 (31%), Gaps = 32/145 (22%)

Query: 20  KDKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLN---------GQLYRPDHSLVDA 67
           K +++ G+S +   V   L      L+  DPPY +  +         GQ  R   ++++ 
Sbjct: 163 KHRLMCGDSTNAEHVARLLAGVQPHLMVTDPPYGVAYDPAWRNEALAGQKTRRTGTVLND 222

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
               W              AW       L P    ++     +   +   L    F I +
Sbjct: 223 DRADWR------------EAW------ALFPGDVAYIWHGALHAATVAESLAACGFSIRS 264

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETL 152
            I+W K   +       +   HE  
Sbjct: 265 QIIWSKERLV--LSRGHYHWMHEPC 287


>gi|227548384|ref|ZP_03978433.1| DNA restriction-modification system, DNA methylase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227079541|gb|EEI17504.1| DNA restriction-modification system, DNA methylase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 667

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/90 (37%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM-KQDY 257
            G     T KPE LL RI+  +T PGDI+LD F GSGT+ AVA+K+ R ++  E+    +
Sbjct: 394 PGTTAFSTPKPERLLERIIHIATNPGDIVLDVFAGSGTTAAVAQKMGRRWVTCELVDDTF 453

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPR 287
                 R+  V  L N    V      EP+
Sbjct: 454 NSFTRPRLEKVV-LDNDPGGVTFTNEREPK 482



 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 60/170 (35%), Gaps = 24/170 (14%)

Query: 26  GNSISVLEKLPA------KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           G+ +  L ++P         V  I+ DPP+N                    +++      
Sbjct: 84  GDVLEALTRVPEFREKYLGKVKCIYIDPPFNTA--------------QTFANYEDNLEHS 129

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPM 137
            +    R  L+  R++L  +G++WV   Y    R+  +L  +      L++ VW+K++  
Sbjct: 130 VWLTMMRDRLVHLRKLLSDDGSIWVHLDYAENHRMRLLLDEVFGSGNFLSEFVWQKADGP 189

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGY--TFNYDALKAANEDVQMRSDWL 185
            N       +    + +      +       +    + +N D   +  W+
Sbjct: 190 RNDPTYFSTDQDTIIAYRKSDNFSVNRLPRPDSMNTRFSNPDKDPKGPWV 239


>gi|284097522|ref|ZP_06385599.1| DNA modification methylase [Candidatus Poribacteria sp. WGA-A3]
 gi|283830966|gb|EFC34999.1| DNA modification methylase [Candidatus Poribacteria sp. WGA-A3]
          Length = 170

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 2/93 (2%)

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
            +E  +  + W   I +G         +  HP   PE L    ++S + PGD++ DPF G
Sbjct: 66  YSEYGRRTNVWEYKIGNGHSASDKIAHK--HPAIFPEQLAQDHILSWSNPGDLVYDPFLG 123

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           SGT   +A+   R+F+G E+  +Y +IA +R+ 
Sbjct: 124 SGTVALMAEMNSRNFVGSEINANYCEIARERLK 156


>gi|325564236|gb|ADZ31427.1| M.PflMI [Pseudomonas fluorescens]
          Length = 363

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 14/131 (10%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G+S+S+L+KLP+ S+ LI  DPPY         +  +   D        FS  + Y  + 
Sbjct: 31  GDSLSLLKKLPSHSISLILTDPPY------HATKKQNIFGDTA------FSDDQHYLEWM 78

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
             +    RRVL+PNG+L+         R+  M     F IL+ IVW K N  P F G + 
Sbjct: 79  SQFADEWRRVLRPNGSLFCFCDTSMSARLEVMFSE-KFNILSHIVWTKPND-PGFDGWKG 136

Query: 146 QNAHETLIWAS 156
           +   E L    
Sbjct: 137 KMKKEALRQWY 147



 Score = 86.2 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 61/157 (38%), Gaps = 9/157 (5%)

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
                   V             ++Q   E ++          Y  +   +   +   +  
Sbjct: 195 GKVNHGGAVSNWETGRNIPSREQYQKICEAILATGKVESMPAYE-DAVRVFRIDGTKEFT 253

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
             W  P          +  +  HP +KP ++L   + ++T PGDI+LD F GSG++ + A
Sbjct: 254 DVWNFPSV--------RPYKGKHPAEKPISMLEHAIEATTFPGDIVLDCFSGSGSTASAA 305

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278
            KL R  + +E++  +++    R+ + +   + E T 
Sbjct: 306 LKLGRRTLSMEIEPHWVEYIGARLDAERVRMDEEQTN 342


>gi|308183495|ref|YP_003927622.1| putative type III restriction enzyme M protein [Helicobacter pylori
           PeCan4]
 gi|308065680|gb|ADO07572.1| putative type III restriction enzyme M protein [Helicobacter pylori
           PeCan4]
          Length = 633

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 65/162 (40%), Gaps = 15/162 (9%)

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK----------AKGYTFNYDA 170
                   +  +         G R++ + E L W   +               YT  Y  
Sbjct: 353 AGGDYNQWLDRQNGKARIKDWGWRWRWSKEKLEWGLKNDFIEIKENSNGEWNIYTKQYLN 412

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKL---HPTQKPEALLSRILVSSTKPGDII 227
                         +  I   S    N+  +++       KPEAL+  IL  ST   D++
Sbjct: 413 CDNDGNIKPRTLQPMALIEKHSNTQSNRHIKEMQLNFTYSKPEALIMDILNFSTNENDLV 472

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRIASV 268
           LD F GSGT+ AVA K++R +IGIE + DYI+ I  +R+  V
Sbjct: 473 LDFFAGSGTTCAVAHKMKRRYIGIE-QMDYIETITKERLKKV 513



 Score = 63.5 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 55/145 (37%), Gaps = 19/145 (13%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            + +IKGN++  L  L    AK V  I+ DPPYN   +   Y              D F 
Sbjct: 165 TNYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNY-------------NDNF- 210

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN--LNFWILNDIVWRKS 134
           +  ++  F +  L A R  L  +G ++V    +    +  ++    L    +  I+W   
Sbjct: 211 NHSSWLVFMKNRLEAAREFLSDDGVIFVQCDDNEQAYLKVLMDEIFLRENFVASIIWANK 270

Query: 135 NPMPNFRGRRFQNAHETLIWASPSP 159
                   + F+  HE +   + + 
Sbjct: 271 EGGGKSDSKHFRQKHEYIHCFAKNK 295


>gi|304437762|ref|ZP_07397712.1| adenine specific DNA methylase Mod [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304369210|gb|EFM22885.1| adenine specific DNA methylase Mod [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 532

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 63/176 (35%), Gaps = 13/176 (7%)

Query: 106 GSYHNIFRIGTMLQNLNF---WILNDIVWRKSNPMPNFRGRRF----QNAHETLIWASPS 158
                 +R   +   +         +I       +P   GR +    +  H  L      
Sbjct: 192 NDPRGPWRSIDLTGQVGHATASQFYEIELPDGRKLPPPDGRCWALSEETFHSLLKDNRIW 251

Query: 159 PKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG------EKLHPTQKPEAL 212
             A G +        +     +   W      G  +   K+       E    T KPE L
Sbjct: 252 LGADGTSRPRQKKFLSEAKGVVPWTWWTNKEVGHNQEAKKEVIALFGPESPFDTPKPERL 311

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           + RIL  ++  GD++LD F GSGT+ AVA K+ R +IGIEM          R+  V
Sbjct: 312 IQRILQIASNEGDLVLDAFLGSGTTAAVAHKMNRRYIGIEMGDHCYTHCKARLDKV 367



 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 68/238 (28%), Gaps = 28/238 (11%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + +I G+++  L  L       V  ++AD PYN                +    +D    
Sbjct: 40  NMLIHGDNLLALRALLPRYGGQVKCVYADIPYNTG--------------SAFSQYDDNLE 85

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
              +    R  +    ++L  +G+LWV         +  +L  +                
Sbjct: 86  HSTWLNLIRPRMEILYQLLNRDGSLWVSIDDDEQAYVKVLLDEIFSRKNFIASIVWQKRT 145

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                    + H+ ++  +    A   + NY  L           D       G  R  +
Sbjct: 146 SPDMRSVISDGHDYVLVYAKDKDAFKASRNYLPLSPEQASSYKNPD---NDPRGPWRSID 202

Query: 198 KDGEKLHPT--QKPE-ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
             G+  H T  Q  E  L     +         L     S  +     K  R ++G +
Sbjct: 203 LTGQVGHATASQFYEIELPDGRKLPPPDGRCWAL-----SEETFHSLLKDNRIWLGAD 255


>gi|260843063|ref|YP_003220841.1| putative methyltransferase [Escherichia coli O103:H2 str. 12009]
 gi|260866987|ref|YP_003233389.1| putative methyltransferase [Escherichia coli O111:H- str. 11128]
 gi|257758210|dbj|BAI29707.1| predicted methyltransferase [Escherichia coli O103:H2 str. 12009]
 gi|257763343|dbj|BAI34838.1| predicted methyltransferase [Escherichia coli O111:H- str. 11128]
          Length = 438

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 84/180 (46%), Gaps = 13/180 (7%)

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
           I N    +    M    G+ +Q + E L         +    ++         V +  D 
Sbjct: 246 IRNGETGKPWRGMTPPPGKHWQMSPEKL-----DELDRKGEIHWSKTGNPRRKVYLTQDK 300

Query: 185 LIPICSGSERLRNKDGEKL----HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
            +P+    ++ R+   + +    +PT+K   +L +I+ +ST  GD++LDPF GSGT+   
Sbjct: 301 KLPLTDYWDQFRDAHHQSIKITGYPTEKNFDMLKKIIAASTNVGDLVLDPFCGSGTTLHA 360

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIA-SVQPLGNIELTVLTGKRTEPRVA---FNLLVER 296
           A++L R ++GI+     I  + +R+   ++P+G+   +    K  + +++   FN +V+ 
Sbjct: 361 AQELDRKWLGIDQSFQAIITSIRRLKYGLEPMGDFVKSNAAEKSRQLKLSDREFNFIVDN 420



 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 84/214 (39%), Gaps = 16/214 (7%)

Query: 3   QKNSLAINENQNSIFEW-KDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLY 58
           QK     N+ + +I     D +I  ++   L+KL       + LI+ DPPY   ++ Q  
Sbjct: 54  QKYISLKNKRKTNIELIPTDSLILADNYFGLKKLMENYTSKIKLIYLDPPYGTGMDFQSR 113

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
              H+  D +  +         +  F R  L+  R +L  +G++++   +  +F +  ++
Sbjct: 114 DLKHAYRDVMGTAP--------WIEFIRRRLIFMRELLTNDGSIYIHIGHQMLFHLKIIM 165

Query: 119 QNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
             +       +++ RK     N+   ++ N ++ +++ S    +K  TF    + A  + 
Sbjct: 166 DEVFGEENFRNLIIRKKCSSKNYTKNQYPNINDYILFYSK---SKKMTFENPGIPAELDW 222

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           +    +             +  G +   T KP  
Sbjct: 223 ISKEYNKRDEKGLFKLVPIHAPGIRNGETGKPWR 256


>gi|224436923|ref|ZP_03657904.1| type III restriction/modification enzyme, methylase subunit
           [Helicobacter cinaedi CCUG 18818]
 gi|313143394|ref|ZP_07805587.1| adenine specific DNA methyltransferase [Helicobacter cinaedi CCUG
           18818]
 gi|313128425|gb|EFR46042.1| adenine specific DNA methyltransferase [Helicobacter cinaedi CCUG
           18818]
          Length = 679

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/91 (40%), Positives = 56/91 (61%), Gaps = 4/91 (4%)

Query: 181 RSDWLIPICS--GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
           + D+L  I +    + +  +   KL   +KPEALL RI+  ST+  D+++D F GSGT+ 
Sbjct: 430 KMDYLTNIFTDDFWQGISKEGQVKLKNGKKPEALLKRIIEISTQENDLVMDFFAGSGTTL 489

Query: 239 AVAKKLRRSFIGIEMKQDYID-IATKRIASV 268
           AVA K+ R +IGIE + DYI+ I  +R+  V
Sbjct: 490 AVAMKMNRRWIGIE-QMDYIESITKERLKKV 519



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 47/128 (36%), Gaps = 19/128 (14%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + +IKGN++  L  L    A  V LI+ DPPYN   +   Y              D F +
Sbjct: 163 NLLIKGNNLLALHSLKKKFANQVKLIYIDPPYNTGNDSFNY-------------NDNF-N 208

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSN 135
              +  F +  L   +  L+ +G +++    +    +  ++         +  I  +   
Sbjct: 209 HSTWLTFMKNRLEIAKEFLRDDGVIFIQCDDNEQAYLKVLMDEFFGRENFICMITCKVKA 268

Query: 136 PMPNFRGR 143
           P     G+
Sbjct: 269 PSGVGSGK 276


>gi|219849126|ref|YP_002463559.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
           aggregans DSM 9485]
 gi|219543385|gb|ACL25123.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aggregans DSM
           9485]
          Length = 356

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 60/152 (39%), Gaps = 13/152 (8%)

Query: 115 GTMLQNLNFWILNDIVWRKSNPMPNFRG--RRFQNAHETLIWASPSPKAKGYTFNYDALK 172
               + L+  +      R S+     RG  R   +  E +   +   + KG+ F      
Sbjct: 211 AAAYEALDTMLAEVAAGRISDFRMIIRGQQRATHSDSEMVSGRAKELREKGFYFLRYHP- 269

Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
              +  +    W I          +  G  +H    P  L    ++++  P  ++LDPF 
Sbjct: 270 ---KGCKPSDVWDI-------LPEDTQGRNVHFAPYPVDLCRIPILATCPPEGVVLDPFC 319

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           G+GT+   A  L R  +GI++ + Y++I  +R
Sbjct: 320 GTGTTLYAALNLGRKSVGIDISRKYLEIVQER 351



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 62/157 (39%), Gaps = 23/157 (14%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++ G+++ VL++LP  SVD +   PPY                +           +  Y 
Sbjct: 27  LLLGDALFVLKELPDSSVDCVMTSPPY------------WGKREYENGGIGLERDYRDYV 74

Query: 83  AFTRAWLLACRRVLKPNGTLW-VIGSYHN-------IFRIGTML-QNLNFWILNDIVWRK 133
                  L  +RVLK  G+ W  IG  ++        +R+   L  +  + + N +VW K
Sbjct: 75  RHVAEIFLELKRVLKSTGSFWLNIGDSYHRKNLLGIPWRVAFELTDHQGWILRNAVVWNK 134

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
                +    R  N +E +       ++KGY +N DA
Sbjct: 135 VKSGMDNTTDRLGNMYEMVFHFVK--QSKGYYYNVDA 169


>gi|324015253|gb|EGB84472.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 60-1]
          Length = 148

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 64/157 (40%), Gaps = 21/157 (13%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           GN I V+ ++P  ++D I  DPPY +       R   ++    TD W + +  E Y    
Sbjct: 2   GNCIDVMARIPDNAIDFILTDPPYLVGFRD---RQGRTIAGDKTDEWLQPACNEMY---- 54

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNFRGRR 144
                   RVLK +  +     ++ + R  +  +N  F ++  +V+ K+      + G R
Sbjct: 55  --------RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNYTSKAAYVGYR 106

Query: 145 FQNAH-----ETLIWASPSPKAKGYTFNYDALKAANE 176
            + A+        +  +P P   G+ ++ +      +
Sbjct: 107 HECAYILAKGRPRLPQNPLPDVLGWKYSGNRHHPTEK 143


>gi|300119345|ref|ZP_07057018.1| type III restriction-modification system, Mod subunit [Bacillus
           cereus SJ1]
 gi|298723273|gb|EFI64042.1| type III restriction-modification system, Mod subunit [Bacillus
           cereus SJ1]
          Length = 175

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/129 (33%), Positives = 66/129 (51%), Gaps = 3/129 (2%)

Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP--ICSGSERLRNKDGE 201
           R    +E+         + G  +  D  K          +  IP    +  + L ++  E
Sbjct: 38  RMPVTNESTTHNYRYVDSDGRRYREDIRKNGKVYRYYLDEGKIPEDSWTDIDSLHHELAE 97

Query: 202 KL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +L +PTQKPEALL RI+ S+T+ GD++ D F GSGT+ AVA+KL R +I  ++ +  I  
Sbjct: 98  RLEYPTQKPEALLRRIIKSATRKGDLVADFFVGSGTTAAVAEKLGRRWIATDLGKFGIHT 157

Query: 261 ATKRIASVQ 269
             KR+  VQ
Sbjct: 158 TRKRLIGVQ 166


>gi|227501379|ref|ZP_03931428.1| possible site-specific DNA-methyltransferase
           (cytosine-N(4)-specific) [Anaerococcus tetradius ATCC
           35098]
 gi|227216433|gb|EEI81850.1| possible site-specific DNA-methyltransferase
           (cytosine-N(4)-specific) [Anaerococcus tetradius ATCC
           35098]
          Length = 126

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
           +    R  W I   +   +         H    P  L+   + +      +ILDPF GSG
Sbjct: 41  KFRNNRDIWTINTSAFKGK---------HYAVFPPKLVELCIKAGCPKKGLILDPFMGSG 91

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           T G VA ++ R +IGI++ +DY  IA +RI  
Sbjct: 92  TVGMVAIRMDREYIGIDINKDYCQIAKERIEK 123


>gi|254411435|ref|ZP_05025212.1| hypothetical protein MC7420_1926 [Microcoleus chthonoplastes PCC
           7420]
 gi|196181936|gb|EDX76923.1| hypothetical protein MC7420_1926 [Microcoleus chthonoplastes PCC
           7420]
          Length = 118

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 48/94 (51%)

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
            +    + + W  P   G ERL+N+  + LH  QKP  L+  I+++++  GD++ +PF G
Sbjct: 11  WHHSHGITNVWSEPAVRGKERLKNRQAKCLHGNQKPLRLIELIILATSDVGDVVWEPFGG 70

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
             ++  V+ +  R     E+  DY  +A  R+  
Sbjct: 71  MCSAAVVSLRKGRRCYSAEVNSDYYQLAKARLEQ 104


>gi|317011696|gb|ADU85443.1| putative type III restriction enzyme M protein [Helicobacter pylori
           SouthAfrica7]
          Length = 622

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/88 (42%), Positives = 55/88 (62%), Gaps = 2/88 (2%)

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
            D  +    G+E ++     ++    KPEAL+SRIL  +T+  D+ILD F GSGT+ AVA
Sbjct: 416 WDKSMITQKGTEEVKQIFKTQIFDFPKPEALISRILEIATQENDLILDFFAGSGTTCAVA 475

Query: 242 KKLRRSFIGIEMKQDYID-IATKRIASV 268
            K++R +IGIE + DYI+ I  +R+  V
Sbjct: 476 HKMKRRYIGIE-QMDYIETITKERLKKV 502



 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 16/118 (13%)

Query: 42  LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
            I+ DPPYN   +   Y              D F +  ++  F +  L A R  L  +G 
Sbjct: 186 CIYIDPPYNTGNDSFNY-------------NDNF-NHSSWLVFMKNRLEAAREFLSDDGV 231

Query: 102 LWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
           ++V    +       ++  +         +     P     G+  +  HE ++  + +
Sbjct: 232 IFVQCDDNEQAYCKVLMDEIFGRENFVSCITHIVKPEGRMYGQVAKT-HEYILVYAKN 288


>gi|124514229|gb|EAY55744.1| putative DNA methylase [Leptospirillum rubarum]
          Length = 263

 Score = 86.6 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 42/72 (58%)

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           +++    HPT KP AL+  +    T  G +ILDPF GSG++G  A      F+GI+++++
Sbjct: 188 DRNLRNHHPTVKPTALMRWLCRLVTPAGGLILDPFMGSGSTGKAAVLEGFRFVGIDVEEE 247

Query: 257 YIDIATKRIASV 268
           Y+ IA  RI   
Sbjct: 248 YVRIAEVRIKHA 259


>gi|227501385|ref|ZP_03931434.1| possible site-specific DNA-methyltransferase
           (cytosine-N(4)-specific) [Anaerococcus tetradius ATCC
           35098]
 gi|227216424|gb|EEI81846.1| possible site-specific DNA-methyltransferase
           (cytosine-N(4)-specific) [Anaerococcus tetradius ATCC
           35098]
          Length = 126

 Score = 86.6 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
           +    R  W I   +   +         H    P  L+   + +      +ILDPF GSG
Sbjct: 41  KFRNNRDIWTINTSAFKGK---------HYAVFPPKLVELCIKAGCPKKGLILDPFMGSG 91

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           T G VA ++ R +IGI++ +DY  IA +RI  
Sbjct: 92  TVGMVAIRMDREYIGIDINKDYCQIAKERIEK 123


>gi|172041475|ref|YP_001801189.1| putative DNA restriction-modification system, DNA methylase
           [Corynebacterium urealyticum DSM 7109]
 gi|171852779|emb|CAQ05755.1| putative DNA restriction-modification system, DNA methylase
           [Corynebacterium urealyticum DSM 7109]
          Length = 664

 Score = 86.6 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/113 (32%), Positives = 52/113 (46%), Gaps = 10/113 (8%)

Query: 184 WLIPICSGSERLRNKDGEKLHP------TQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           W      G  R    + + L P      T KPE LL RI+   + PGDI+LD F GSGT+
Sbjct: 368 WWENKDVGHNRAAKSELKALFPALTPFDTPKPERLLERIIHIGSNPGDIVLDVFAGSGTT 427

Query: 238 GAVAKKLRRSFIGIE-MKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
            AVA+K+ R ++  E ++  +      R+  V    N E      +    RVA
Sbjct: 428 AAVAQKMGRRWVTCELLESTFTTFTRPRLEKV---VNDEDPGGITRTKGERVA 477



 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 64/204 (31%), Gaps = 26/204 (12%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKL---PA------KSVDLIFADPPYNLQ 52
            +      +E  +   + ++ +I G S  VLE L   P         V LI+ DPP+N  
Sbjct: 55  EKSEEFDYSERADLEPQDENLLILGESGDVLESLTRVPELAEKYVGKVKLIYIDPPFNTA 114

Query: 53  LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
                             S++       +    R  LL  +++L  +G++WV      + 
Sbjct: 115 --------------QTFASYEDNLEHSIWLTMMRDRLLHMKKLLADDGSIWVHLDDVEVH 160

Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
           R+  ++  +                   RG  F    + +I    S   +       A  
Sbjct: 161 RMRVLMDEVFGAGNFQAEIVWQKADSPRRGLGFSVDQDFVIVYRRSEAFEPNKALRTAAD 220

Query: 173 AA---NEDVQMRSDWLIPICSGSE 193
            A   N D      W     SG+ 
Sbjct: 221 NARFSNPDNDPLGPWWDDNPSGNH 244


>gi|307638054|gb|ADN80504.1| type III restriction-modification system methylation subunit
           [Helicobacter pylori 908]
 gi|325996659|gb|ADZ52064.1| Type III restriction-modification system methylation subunit
           [Helicobacter pylori 2018]
 gi|325998249|gb|ADZ50457.1| Type III restriction-modification system methylation subunit
           [Helicobacter pylori 2017]
          Length = 652

 Score = 86.6 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/124 (34%), Positives = 63/124 (50%), Gaps = 3/124 (2%)

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
           +N+HE +            T   + + A N      SD    I +    +  + G  L  
Sbjct: 411 KNSHENIKIIRTDFNRNTDTARIELVSAKNNQSVFLSDIWKKIVTTG-GVAQEGGVILKN 469

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKR 264
            +KPE LL  IL S+T   D++LD F GSGT+ AVA K++R +IGIE + DYI+ I  +R
Sbjct: 470 GKKPEHLLEIILRSATNENDLVLDFFAGSGTTCAVAHKMKRRYIGIE-QMDYIETITKER 528

Query: 265 IASV 268
           +  V
Sbjct: 529 LKKV 532



 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/195 (23%), Positives = 73/195 (37%), Gaps = 36/195 (18%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVD---LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
            E  + +IKGN++  L  L  K       I+ DPPYN   +   Y              D
Sbjct: 166 DENTNYLIKGNNLIALHSLKKKFAKKVKCIYIDPPYNTGNDSFNY-------------ND 212

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVW 131
            F +  ++  F +  L A R  L  +G ++V    +    +  ++  +      +N IV 
Sbjct: 213 NF-NHSSWLVFMKNRLEAAREFLSDDGVIFVQCDDNEQAYLKVLMDEIFGRENFVNCIVC 271

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
             SN      G + Q+A    I     PK K Y   Y    A N++        + I   
Sbjct: 272 EMSN----ESGNKIQHA----IQGKKFPKVKEYILVY----AKNKENIC-----LIIPKV 314

Query: 192 SERLRNKDGEKLHPT 206
            +R  +K+   + PT
Sbjct: 315 QKRKWDKEYNIIIPT 329


>gi|315106921|gb|EFT78897.1| DNA (cytosine-5-)-methyltransferase [Propionibacterium acnes
           HL030PA1]
          Length = 663

 Score = 86.6 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 55/129 (42%), Gaps = 6/129 (4%)

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK-----DG 200
           Q AH  +   +        T         NE    RS W       +   +++      G
Sbjct: 330 QCAHTRIDDGNWPEFFVTATSFGRKSYPPNEGQPARSWWPNDQVGHNREAKSEIKALFSG 389

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE-MKQDYID 259
                T KPE LL RI+   + PGDI+LD F GSGT+ AVA+K+ R ++  E ++  +  
Sbjct: 390 ATPFSTPKPERLLERIIHIGSNPGDIVLDVFAGSGTTAAVAQKMGRRWVTCELLESTFTT 449

Query: 260 IATKRIASV 268
               R+  V
Sbjct: 450 FTRPRLEKV 458



 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 85/278 (30%), Gaps = 61/278 (21%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKG---NSISVLEKLPA------KSVDLIFADPPYNLQ 52
            + +  A +E  +   +  + +I G   + +  L ++P         V LI+ DPP+N  
Sbjct: 55  PKSDEFAYSERADLEPQDDNLLILGESGDVLEALTRVPELAEKYVGKVKLIYIDPPFNTA 114

Query: 53  LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
                             S++       +    R  L   +++L  +G++WV   Y    
Sbjct: 115 --------------QTFASYEDNLEHSIWLTMMRDRLHHMKKLLADDGSIWVHLDYAENH 160

Query: 113 RIGTMLQNL-----------------------NFWILNDIVWRKSNPMPNFRGRRFQNAH 149
           R+  +L  +                          +  D++   +        R  + A 
Sbjct: 161 RMRLLLDEVFGCSNFIAEFVWQKADSPRGDAQRVSVDQDVILCYAASGSTVMNRMERTAA 220

Query: 150 ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
           +   +++P   +KG  F+ +     N              S         GE ++P +  
Sbjct: 221 DNARFSNPDGDSKGVWFSDNRSAPTNVMSWQH-------PSTFAIQHPISGEMIYPAKGG 273

Query: 210 EALL--SRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
                  R+L S  +  +        SG     A+   
Sbjct: 274 CWRFGRERLLESLNEYAEYA------SGDVDIAARVAN 305


>gi|172036680|ref|YP_001803181.1| hypothetical protein cce_1765 [Cyanothece sp. ATCC 51142]
 gi|171698134|gb|ACB51115.1| hypothetical protein cce_1765 [Cyanothece sp. ATCC 51142]
          Length = 560

 Score = 86.6 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 60/277 (21%), Positives = 96/277 (34%), Gaps = 31/277 (11%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
               SL   EN +SI E    + +G+S ++L +L +  +      PPY    N + Y   
Sbjct: 293 KSMKSLTSRENLSSIPEI--TLYQGDSFNILSQLESNYLGGAVTSPPY---YNARNYS-- 345

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG-TLWVIGSYHNIFRI------ 114
                       ++S+   Y            R LK     L  I  Y +  +I      
Sbjct: 346 ------------QWSNIYCYLYDMYNIFNQVYRCLKEGSPLLINIFDYFDNEKIIVFSDM 393

Query: 115 ---GTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD-A 170
                +L +   +I   I +     +   +G    N +      SP  +A    + +   
Sbjct: 394 GKKRLILSSYISFICRYIGFNHLGNIAWDKGEIEGNRNFNQGNYSPYYQAPHNCWEHILI 453

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
               N    +     I       ++        H    PE + S +L S     +IILDP
Sbjct: 454 FSKGNPSFDVTKIPKIIKEKPITKIVKGKNIYGHTAPFPEKVPS-LLFSLITKDEIILDP 512

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           F GS T+G VA K     I IE+ + Y D+A   +  
Sbjct: 513 FTGSMTTGRVALKYGIKSINIELHKHYCDLALNLLKQ 549


>gi|13542244|ref|NP_111932.1| adenine-specific DNA methylase [Thermoplasma volcanium GSS1]
 gi|14325677|dbj|BAB60580.1| TVG1487993 [Thermoplasma volcanium GSS1]
          Length = 316

 Score = 86.6 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 162 KGYTFNYDALKAANEDVQMRSDWL---IPICSGSERLRNKDGEKLHPTQKPEALLSRILV 218
           K  T    + K  N +     +W+   I +       R+   + +HP   P +L  +++ 
Sbjct: 37  KINTIKTCSCKENNLNCLTAKEWIKRQIGVWEFYYEKRDIRDKTVHPATFPISLAKQVIE 96

Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278
             +  G++++DPF GSGT+   A+   R+ +G ++++ YI +  +R+++ + +GN +   
Sbjct: 97  LFSHEGELVVDPFVGSGTTLVAARDSNRNAVGFDLQEKYIKLCAERLSTQRIVGNAQQVA 156

Query: 279 LT 280
           + 
Sbjct: 157 IE 158



 Score = 43.1 bits (100), Expect = 0.073,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 49/147 (33%), Gaps = 18/147 (12%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFS------ 76
           I+ ++ ++      +S+ LIF  PPY NL    +  +   +  +      +++S      
Sbjct: 157 IEEDARNISNYFNEESISLIFTSPPYANLLNRERKNKSRRNRKNNQLGKVEQYSQDPRDL 216

Query: 77  ---SFEAYDAFTRAWLLACRRVLKPNGTL--------WVIGSYHNIFRIGTMLQNLNFWI 125
                E+Y           +  L+  G          W          +   +    + +
Sbjct: 217 GTLDVESYTKEMGDIFEKVKPALRTKGHCVINVPDMWWENKRIAIHVYLINEMTKRGYEL 276

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETL 152
            N I+W K N +       + + + T+
Sbjct: 277 RNIIIWDKRNLVNQIGIFGWPSNYITM 303


>gi|315587257|gb|ADU41638.1| methylase [Helicobacter pylori 35A]
          Length = 632

 Score = 86.6 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 66/162 (40%), Gaps = 15/162 (9%)

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK----------AKGYTFNYDA 170
                   +  +         G R++ + E L W   +               YT  Y  
Sbjct: 352 AGGDYDQWLDRQNGKARIKDWGWRWRWSKEKLEWGLKNDFIEIKENSNGEWNIYTKQYLN 411

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKL---HPTQKPEALLSRILVSSTKPGDII 227
             +           +  I   S    N+  +++       KPEAL+  IL  ST   D++
Sbjct: 412 CDSDGNIKPRTLQPMALIEKHSNTQSNRHIKEMQLNFTYSKPEALIMDILNFSTNENDLV 471

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRIASV 268
           LD F GSGT+ AVA K++R +IGIE + DYI+ I  +R+  V
Sbjct: 472 LDFFAGSGTTCAVAHKMKRRYIGIE-QMDYIETITKERLKKV 512



 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 54/145 (37%), Gaps = 19/145 (13%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            + +IKGN++  L  L    AK V  I+ DPPYN   +   Y              D F 
Sbjct: 164 TNYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNY-------------NDNF- 209

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN--LNFWILNDIVWRKS 134
           +  ++  F +  L   R  L  +G ++V    +    +  ++    L    +  I+W   
Sbjct: 210 NHSSWLVFMKNRLEVAREFLSDDGVIFVQCDDNEQAYLKVLMDEIFLRENFVASIIWANK 269

Query: 135 NPMPNFRGRRFQNAHETLIWASPSP 159
                   + F+  HE +   + + 
Sbjct: 270 EGGGKSDSKHFRQKHEYIHCFAKNK 294


>gi|256026475|ref|ZP_05440309.1| putative type III restriction enzyme M protein [Fusobacterium sp.
           D11]
          Length = 357

 Score = 86.6 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 53/234 (22%), Positives = 90/234 (38%), Gaps = 52/234 (22%)

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSN--PMPNF 140
            +  L   +++L  +G++++   Y+ +     ++ ++        +I+WR          
Sbjct: 1   MKNRLELAKKLLTDDGSIFINLDYNEVHYCKVLMDDIFGRENFQREIIWRIGWVSGYKTS 60

Query: 141 RGRRFQNAHETLIWASPSP---KAKGYTFNYDALKAANEDVQMR-----------SDWLI 186
                +N H+T+++ S +      K Y  N +      +D                D L+
Sbjct: 61  VNNYIRN-HDTILFYSKNKEFYFNKQYILNSEFKNLVKKDKVKSEFEKLNIDDDLQDKLL 119

Query: 187 PICSGSERLRNKDGEKLHPT-------------------------------QKPEALLSR 215
            I +   R      E +                                  QK E L+ R
Sbjct: 120 NIINYKTRPERYPLEDVWNANEYDDLNSIAIVSYSGESVSKMLKIENDIKGQKSEKLIER 179

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI-DIATKRIASV 268
           I+ +ST  GD ILD   GSGT+ AVA K+ R +IGIE + DYI DI  +R+  V
Sbjct: 180 IIKNSTMEGDTILDFHLGSGTTAAVAHKMGRRYIGIE-QMDYIEDIVVERLKKV 232


>gi|76810413|ref|YP_335021.1| adenine specific DNA methylase Mod [Burkholderia pseudomallei
           1710b]
 gi|254258911|ref|ZP_04949965.1| adenine specific DNA methylase Mod [Burkholderia pseudomallei
           1710a]
 gi|76579866|gb|ABA49341.1| Adenine specific DNA methylase Mod [Burkholderia pseudomallei
           1710b]
 gi|254217600|gb|EET06984.1| adenine specific DNA methylase Mod [Burkholderia pseudomallei
           1710a]
          Length = 567

 Score = 86.6 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 45/76 (59%)

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           E +++ +      T KPE LL R++  +T PGD++LD F GSGT+GAVA K+ R +I +E
Sbjct: 298 EEVKSINSVDSFSTPKPEKLLKRVIDLATNPGDLVLDSFAGSGTTGAVAHKMGRRWIMVE 357

Query: 253 MKQDYIDIATKRIASV 268
           + +        R+  V
Sbjct: 358 LGEHCHTHIIPRLKKV 373



 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 60/174 (34%), Gaps = 22/174 (12%)

Query: 19  WKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + +++I G+++  L+ L    +  V  +F DPPYN                +    +D  
Sbjct: 44  FDNRLIFGDNLLALKALEQEFSGQVKCVFIDPPYNTG--------------SAFVHYDDG 89

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRK 133
                +    R  L    R+L  +G+LW+    +    +  +   +      + + VW+K
Sbjct: 90  LEHSIWLGLMRDRLELIVRLLADDGSLWITIDDNEAHYLKVLCDEIFGRGNFVANAVWQK 149

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK---AANEDVQMRSDW 184
              + N      +N    L++A      +       A       N D   +  W
Sbjct: 150 KYTVANDAKWLAENHDHVLVYAKNKELWRPNRLERTAEMDGRYRNPDGHPKGPW 203


>gi|163741620|ref|ZP_02149011.1| DNA methyltransferase [Phaeobacter gallaeciensis 2.10]
 gi|161385354|gb|EDQ09732.1| DNA methyltransferase [Phaeobacter gallaeciensis 2.10]
          Length = 400

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 40/68 (58%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            G   H    P+ L    + ++  P  ++LDPF G+GTS  VA+KL R  IGI++  +YI
Sbjct: 331 KGRSGHYAAFPQDLCDVPIRATCPPSGVVLDPFVGTGTSLVVARKLGRHGIGIDLSDEYI 390

Query: 259 DIATKRIA 266
           ++A +R+ 
Sbjct: 391 NLARQRLQ 398



 Score = 81.2 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 55/150 (36%), Gaps = 21/150 (14%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +I+ +++  L  +P+  +D     PPY  Q   +                 +  +   Y 
Sbjct: 74  LIQSDALDALRGMPSNIIDCAITSPPYWQQRAYEAGGIG------------EEQTVGEYL 121

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFR---------IGTMLQNLNFWILNDIVWRK 133
              RA      R+LKP G+LW+        R         +  ++++  + I ND++W K
Sbjct: 122 TDLRAVFQQVHRLLKPTGSLWINIDDTYHQRSMQGIPWRLVLGLVEDCGWLIRNDVIWSK 181

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
           +    N    RF + HE L     S     
Sbjct: 182 TGGSLNRSSNRFSHRHEHLFHLVKSEDYYH 211


>gi|145636496|ref|ZP_01792164.1| type III restriction-modification system methyltransferase-like
           protein [Haemophilus influenzae PittHH]
 gi|145270321|gb|EDK10256.1| type III restriction-modification system methyltransferase-like
           protein [Haemophilus influenzae PittHH]
          Length = 231

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/91 (43%), Positives = 56/91 (61%), Gaps = 7/91 (7%)

Query: 184 WLIPICSGSE----RLRNKDGEKLHPT-QKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
           W I +C   E    +    +G    PT +KPEALL RI+  +T+ GDI+LD   GSGT+ 
Sbjct: 9   WSILVCDFWEDIDFQNTQNEGGISFPTGKKPEALLHRIIDMTTQKGDIVLDYHLGSGTTA 68

Query: 239 AVAKKLRRSFIGIEMKQDYID-IATKRIASV 268
           AVA K+ R +IGIE + DYI+ +A +R+  V
Sbjct: 69  AVAHKMNRQYIGIE-QMDYIETLAVERLKKV 98


>gi|239627885|ref|ZP_04670916.1| DNA methylase [Clostridiales bacterium 1_7_47_FAA]
 gi|239518031|gb|EEQ57897.1| DNA methylase [Clostridiales bacterium 1_7_47FAA]
          Length = 60

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 36/54 (66%)

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            ++ +ST+PGDI+LDPF GSGT+     +L R +IG E+ + Y ++A KRI   
Sbjct: 1   MLIENSTRPGDIVLDPFIGSGTTAVACIELGRQYIGYEINEGYFEVAQKRIQDT 54


>gi|238024955|ref|YP_002909187.1| DNA methyltransferase [Burkholderia glumae BGR1]
 gi|237879620|gb|ACR31952.1| DNA methyltransferase [Burkholderia glumae BGR1]
          Length = 380

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 23/164 (14%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++ G++++VL+ LP + +D     PPY                +         + +  + 
Sbjct: 51  LLNGDALNVLQALPDECIDCAMTSPPY------------WGKREYENGGIGLEADYRDFV 98

Query: 83  AFTRAWLLACRRVLKPNGTLW-VIGSYHN-------IFRIGTML-QNLNFWILNDIVWRK 133
               A  L  +RVLKP G+ W  +G  ++        +R+   L  N  + + N +VW K
Sbjct: 99  RDLAAIFLELKRVLKPTGSFWLNLGDTYDGKGLLGIPWRVAFELTDNQGWTMRNSVVWNK 158

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
                +    R  N HE L       KAKGY +N DA+++   +
Sbjct: 159 LKGGMDNSKDRLANVHENLFHFVK--KAKGYYYNADAIRSKPRE 200



 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 40/85 (47%)

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
              +   P         +      H    P  L  R L+++  P  ++LDPF G+GT+  
Sbjct: 291 YHPNGSKPGDVWDIIPEDTQRRGTHFAPYPVDLCRRPLLATCPPRGVVLDPFCGTGTTLL 350

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKR 264
            A+++    IGI++ + Y++++ +R
Sbjct: 351 AARQIGLKSIGIDISRQYLELSQER 375


>gi|168698012|ref|ZP_02730289.1| DNA methyltransferase [Gemmata obscuriglobus UQM 2246]
          Length = 501

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 63/158 (39%), Gaps = 8/158 (5%)

Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQ----NAHETLIWASPSPKAKGYTFNYDALKAA 174
                W   D+  R   PM  F  R  Q     +    +        +G           
Sbjct: 150 DPRGAWRAVDLTTRMDRPMLQFEWRGHQPPIGRSWRYQLSELERLADEGRIHFSAGGSPP 209

Query: 175 NEDVQMRSDWLIPICSGSERLRNKDG----EKLHPTQKPEALLSRILVSSTKPGDIILDP 230
                      +P+ +  + L+   G        P+Q+P AL+ R+++ ++ P D+++DP
Sbjct: 210 RLKAYQSERRSVPVGTIWDDLQPLRGGSAERVGFPSQQPVALIERVILRTSNPDDLVIDP 269

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           + GSGTS   A +  R +IG +   + I++   R+++ 
Sbjct: 270 YCGSGTSLVAAHRQDRCWIGCDSSPEAIELTRARLSTA 307



 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 43/122 (35%), Gaps = 10/122 (8%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + +   +S+++LE++       I+ DPP+  Q +         + + + D  D F+    
Sbjct: 5   NSLYHADSLTLLERIDGGVARTIYLDPPWFSQPSIGTRGSGSRVANGLRDYLDNFA---- 60

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                   L  C R+L  +G++ V        +   +L+ +      D        M   
Sbjct: 61  ------RVLQQCHRILADDGSIIVHAEPSLGQKFALLLEQIFRDNHVDDYILPQFGMNQG 114

Query: 141 RG 142
             
Sbjct: 115 VR 116


>gi|284008244|emb|CBA74551.1| phage DNA methyltransferase [Arsenophonus nasoniae]
          Length = 346

 Score = 86.2 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 17/117 (14%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAY 81
           ++ G+++  ++ LP  S+DLI  DPPY                   + SWD ++ + E Y
Sbjct: 9   LVNGDALPYVKTLPDDSIDLILTDPPY---------------YRVKSCSWDRQWKTTEQY 53

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            A+   +L+  +R+LKPNG+L++  S         ML+N +  +LN I+W K     
Sbjct: 54  LAWLDDYLVEFQRILKPNGSLYLFCSSTLAADTEIMLRN-HMKVLNHIIWAKPYGRW 109



 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 53/132 (40%), Gaps = 8/132 (6%)

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +P+F     +   +           K    N     +  +DV     W  P         
Sbjct: 208 VPSFSKSYNELQRDYGELTKSYGDLKRQYENLRRPFSVTKDVPYTDVWNFP---PVLYYP 264

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
            K     HP +KP ALL  I+ +S+K G  + D F GSG++   A KL R  IG+E++ D
Sbjct: 265 GK-----HPCEKPAALLEHIINASSKSGHTVADFFMGSGSTVKAAIKLGRQAIGVELETD 319

Query: 257 YIDIATKRIASV 268
                 K I ++
Sbjct: 320 RFMQTKKEIENL 331


>gi|50843079|ref|YP_056306.1| putative type III restriction-modification system
           [Propionibacterium acnes KPA171202]
 gi|50840681|gb|AAT83348.1| putative type III restriction-modification system
           [Propionibacterium acnes KPA171202]
          Length = 663

 Score = 86.2 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 6/103 (5%)

Query: 172 KAANEDVQMRSDWLIPICSGSERLRNK-----DGEKLHPTQKPEALLSRILVSSTKPGDI 226
              NE    RS W       +   +++      G     T KPE LL RI+   + PGDI
Sbjct: 356 YPPNEGQPARSWWPNDQVGHNREAKSEIKALFSGATPFSTPKPERLLERIIHIGSNPGDI 415

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIE-MKQDYIDIATKRIASV 268
           +LD F GSGT+ AVA+K+ R ++  E ++  +      R+  V
Sbjct: 416 VLDVFAGSGTTAAVAQKMGRRWVTCELLESTFTTFTRPRLEKV 458



 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 85/278 (30%), Gaps = 61/278 (21%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKG---NSISVLEKLPA------KSVDLIFADPPYNLQ 52
            + +  A +E  +   +  + +I G   + +  L ++P         V LI+ DPP+N  
Sbjct: 55  PKSDEFAYSERADLEPQDDNLLILGESGDVLEALTRVPELAEKYVGKVKLIYIDPPFNTA 114

Query: 53  LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
                             S++       +    R  L   +++L  +G++WV   Y    
Sbjct: 115 --------------QTFASYEDNLEHSIWLTMMRDRLHHMKKLLADDGSIWVHLDYAENH 160

Query: 113 RIGTMLQNL-----------------------NFWILNDIVWRKSNPMPNFRGRRFQNAH 149
           R+  +L  +                          +  D++   +        R  + A 
Sbjct: 161 RMRLLLDEVFGCSNFIAEFVWQKADSPRGDAQRVSVDQDVILCYAASGSTVMNRMERTAA 220

Query: 150 ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
           +   +++P   +KG  F+ +     N              S         GE ++P +  
Sbjct: 221 DNARFSNPDGDSKGVWFSDNRSAPTNVMSWQH-------PSTFAIQHPISGEMIYPAKGG 273

Query: 210 EALL--SRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
                  R+L S  +  +        SG     A+   
Sbjct: 274 CWRFGRERLLESLNEYAEYA------SGDVDIAARVAN 305


>gi|227548305|ref|ZP_03978354.1| DNA restriction-modification system, DNA methylase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227079623|gb|EEI17586.1| DNA restriction-modification system, DNA methylase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 627

 Score = 86.2 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 3/85 (3%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-I 260
           K   T KPE LL RI+  +T PGDI+LD F GSGT+ AVA+K+ R ++  E+ +D  +  
Sbjct: 355 KAFDTPKPERLLERIIHIATNPGDIVLDVFAGSGTTAAVAQKMGRRWVTCELVEDTFNRF 414

Query: 261 ATKRIASVQPLGNIELTVLTGKRTE 285
              R+  V  + N +   +T ++ E
Sbjct: 415 TRPRLEKV--VNNEDQGGITLQKEE 437



 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 22/139 (15%)

Query: 26  GNSISVLEKLPA------KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           G+ +  L ++P         V  I+ DPP+N                    +++      
Sbjct: 41  GDVLEALTRMPEWSEKYVGKVKCIYIDPPFNTA--------------QTFANYEDNLEHS 86

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPM 137
            +    R  LL  R +L  +G++WV        R+  +L  +      L +I W+K   +
Sbjct: 87  VWLTMMRDRLLHMRDLLSEDGSIWVHLDDVENHRMRVLLDEVFGAGNFLAEITWKKGAQV 146

Query: 138 PNFRGRRFQNAHETLIWAS 156
            N  G    ++    ++A 
Sbjct: 147 RNNSGDFSSDSDFITVYAK 165


>gi|331028047|ref|YP_004421762.1| DNA methylase [Synechococcus phage S-CBS3]
 gi|294805660|gb|ADF42498.1| DNA methylase [Synechococcus phage S-CBS3]
          Length = 754

 Score = 86.2 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 55/297 (18%), Positives = 96/297 (32%), Gaps = 63/297 (21%)

Query: 23  IIKGNSISVLEKLPAKSVD-LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +  G+ +  + KL   S+   IF  PP+       LY   +S  D      D+    E +
Sbjct: 461 LYLGDCVESIGKLDDDSIHYSIF-SPPF-----ASLYTYSNSERDMGNSKDDQ----EFF 510

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIG----------------SYHNIFRIGTMLQNLNFWI 125
           D F         RVL P   +                     +     +  + Q   F  
Sbjct: 511 DHFVFLA-KELHRVLMPGRLISFHCMNLPSSKERDGFIGVKDFRGD--MLRIFQAAGFVF 567

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETL--------------------IWASPSPKAKGYT 165
            +++   K       R +     H+ +                    +  +P P A  +T
Sbjct: 568 HSEVCIWKDPVTAMQRTKAIGLLHKQVRKDSALSRQGIPDYLVTVRKLGDNPEPCAGPFT 627

Query: 166 F---NYDALKAANEDVQMRSDW----------LIPICSGSERLRNKDGEKLHPTQKPEAL 212
                    K  +E     + W          + P  +   R    + ++ H       +
Sbjct: 628 EFAGENGPRKTGDEIKDSINIWQRYASPVWMDINPSDTLQYRSARANEDERHICPLQLDV 687

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           + R +   + PGD++L PF G G+ G VA +  R F+G E+K  Y   A K +   +
Sbjct: 688 IRRGMQLWSNPGDVVLSPFAGIGSEGFVALEQGRKFVGFELKPSYFGCAVKNLQVAE 744


>gi|261838682|gb|ACX98448.1| type III restriction enzyme M protein [Helicobacter pylori 51]
          Length = 645

 Score = 85.8 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 5/125 (4%)

Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
           F+N++  +        A G T ++DA     +   +R DW          +  +      
Sbjct: 405 FKNSNNIIRQFLKLSDAIGETDDFDAKIGLRK---IRGDWWGGFYKDMMNINKEANLVWK 461

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATK 263
             +KPE L+  IL  ST   D++LD F GSGT+ AVA K++R +IGIE + DYI+ I  +
Sbjct: 462 AGKKPERLIRDILEISTNENDLVLDFFAGSGTTCAVAHKMKRRYIGIE-QMDYIETITKE 520

Query: 264 RIASV 268
           R+  V
Sbjct: 521 RLKKV 525



 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 62/173 (35%), Gaps = 23/173 (13%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            + +IKGN++  L  L    AK V  I+ DPPYN   +   Y              D F 
Sbjct: 167 TNYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNY-------------NDNF- 212

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW------ILNDIV 130
           +  ++  F +  L   R  L  +G ++V    +    +  ++  +         +  ++ 
Sbjct: 213 NHSSWLVFMKNRLEVAREFLSDDGVIFVQCDDNEQAYLKVLMDEIFLRENFVANLHVELS 272

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
             +   + + +        E ++  S + +   +  +    K  +E   +  D
Sbjct: 273 ATQGMKVASAKKGNIVKNAEYILIYSKNMENFSFIRSLYVAKEWDEHYSIYID 325


>gi|197248763|ref|YP_002149430.1| DNA methylase [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197212466|gb|ACH49863.1| DNA methylase [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
          Length = 322

 Score = 85.8 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 50/328 (15%), Positives = 99/328 (30%), Gaps = 92/328 (28%)

Query: 22  KIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K+  G+S+ VL            V+LI   PP+ L    +                    
Sbjct: 11  KLYLGDSLDVLND-EDISKYVGKVNLIVTSPPFPLNNKKKYGNEIG-------------- 55

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLW-VIGSYHNIFR----------IGTMLQNLNFWI 125
             EAY  + +       ++L  +G+L   IG+     R          +  M +  N  +
Sbjct: 56  --EAYREWFKKLTPIFNQLLADDGSLVIEIGNAWEPERPVQSTLHLECLFEMTKQKNSEL 113

Query: 126 L--NDIVWRKSNPMPNFRGR------RFQNAHETLIWASPSPKAK--------------- 162
               + +      +P+          R  +++  + W + +   K               
Sbjct: 114 RLIQEFICYNPAKLPSPAQWVTVNRLRTVDSYTHVWWLAKTDYPKADNKKVLRPYSKSMR 173

Query: 163 ---------------------------------GYTFNYDALKAANEDVQMRSDWLIPIC 189
                                               F  + +    +     +       
Sbjct: 174 KLLERQTYNAGMRPSEHKISEKGFLKDHGGSISHNFFELEPIDEYRDVRLPHNVMSFSNV 233

Query: 190 SGSE---RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           S ++   R   + G K HP +  + +++  +   T   D+I DPF GS T+G  A+  +R
Sbjct: 234 SSNDFFIRKCKEMGIKPHPARMNKGIVNFFIDFLTDENDLIFDPFGGSNTTGFCAELKKR 293

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNI 274
            ++ IE  + Y + +  R    +    I
Sbjct: 294 RWLAIEADEKYAEQSKVRFEDPELKKEI 321


>gi|317010061|gb|ADU80641.1| putative type III restriction enzyme M protein [Helicobacter pylori
           India7]
          Length = 629

 Score = 85.8 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 2/131 (1%)

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             + +  ++  + L+    +     +  +Y       +   +  D       G   ++N 
Sbjct: 380 WSKDKIIKDMDKLLVRLVNNEHYDIFEKDYLTQDKRRKQKSLWLDKDFNNELGGLHIKNL 439

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
              K+    K E L+ RIL  ST   D++LD F GSGT+ AVA K++R +IGIE + DYI
Sbjct: 440 FNNKIFAYPKSEHLIQRILEVSTNENDLVLDFFAGSGTTCAVAHKMKRRYIGIE-QMDYI 498

Query: 259 D-IATKRIASV 268
           + I  +R+  V
Sbjct: 499 ETITKERLKKV 509



 Score = 59.6 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 62/185 (33%), Gaps = 23/185 (12%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            + +IKGN++  L  L    AK V  I+ DPPYN   +   Y              D F 
Sbjct: 165 TNYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNY-------------NDNF- 210

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSN 135
           +  ++  F +  L A R  L  +G ++V    +    +  ++  +              N
Sbjct: 211 NHSSWLVFMKNRLEAAREFLSDDGVIFVQCDDNEQAYLKVLMDEIFGRENFVGCCPICVN 270

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
           P      + F N H+  I       AK  T  Y      N+D     +         E  
Sbjct: 271 PRGRQSDKFFPNTHDYFI-----AYAKNITNFYLNGLCLNDDETKEFNKQDDKGKYREIG 325

Query: 196 RNKDG 200
             K G
Sbjct: 326 LRKRG 330


>gi|281420518|ref|ZP_06251517.1| adenine specific DNA methylase Mod [Prevotella copri DSM 18205]
 gi|281405291|gb|EFB35971.1| adenine specific DNA methylase Mod [Prevotella copri DSM 18205]
          Length = 561

 Score = 85.8 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 31/68 (45%), Positives = 47/68 (69%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           EK+  T KPE L+ +IL  +T  GD++LD + GSGT+ AVA KL+R++IGIE+ +   ++
Sbjct: 285 EKVFDTPKPEELIRQILEIATNEGDLVLDSYLGSGTTLAVAHKLKRNYIGIEIGEQMTEL 344

Query: 261 ATKRIASV 268
              R+ SV
Sbjct: 345 VVNRLKSV 352



 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 67/186 (36%), Gaps = 28/186 (15%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
            +     + K+ +IKGN+  +L +L  +    V  ++ DPPYN   +   Y  + S    
Sbjct: 12  NSSMGTSDSKNILIKGNNKDILPELVGEFGGKVKCVYIDPPYNNGDSYHYYNDNISET-- 69

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWI 125
              SW K  S+          L+  + +L  +G++W+      +  +      +      
Sbjct: 70  ---SWLKDISY---------VLMYLKMLLTKDGSIWISIDDSEMAYLKVAADKVLGRENF 117

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN-------YDALKAANEDV 178
              IVW++     N     F   HE ++  +   K    + N       +   K  N D 
Sbjct: 118 AGTIVWQQRKTRENRA--VFSCNHEYILVYAKDIKKFKKSRNLLPVGEDFINSKYKNPDN 175

Query: 179 QMRSDW 184
             R  W
Sbjct: 176 DPRGPW 181


>gi|323967422|gb|EGB62843.1| DNA methylase [Escherichia coli M863]
          Length = 331

 Score = 85.8 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 84/180 (46%), Gaps = 13/180 (7%)

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
           I N    +    M    G+ +Q + E L         +    ++         V +  D 
Sbjct: 139 IRNGETGKPWRGMTPPPGKHWQMSPEKL-----DELDRKGEIHWSKTGNPRRKVYLTQDK 193

Query: 185 LIPICSGSERLRNKDGEKL----HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
            +P+    ++ R+   + +    +PT+K   +L +I+ +ST  GD++LDPF GSGT+   
Sbjct: 194 KLPLTDYWDQFRDAHHQSIKITGYPTEKNFDMLKKIIAASTNVGDLVLDPFCGSGTTLHA 253

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIA-SVQPLGNIELTVLTGKRTEPRVA---FNLLVER 296
           A++L R ++GI+     I  + +R+   ++P+G+   +    K  + +++   FN +V+ 
Sbjct: 254 AQELDRKWLGIDQSFQAIITSIRRLKYGLEPMGDFVKSNAAEKSRQLKLSDREFNFIVDN 313



 Score = 39.6 bits (91), Expect = 0.84,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 52/132 (39%), Gaps = 4/132 (3%)

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPN 139
           +  F R  L+  R +L  +G++++   +  +F +  ++  +       +++ RK     N
Sbjct: 21  WIEFIRRRLIFMRELLTNDGSIYIHIGHQMLFHLKIIMDEVFGEENFRNLIIRKKCSSKN 80

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           +   ++ N ++ +++ S    +K  TF    + A  + +    +             +  
Sbjct: 81  YTKNQYPNINDYILFYSK---SKKMTFENPGIPAELDWISKEYNKRDEKGLFKLVPIHAP 137

Query: 200 GEKLHPTQKPEA 211
           G +   T KP  
Sbjct: 138 GIRNGETGKPWR 149


>gi|68536318|ref|YP_251023.1| putative DNA restriction-modification system, DNA methylase
           [Corynebacterium jeikeium K411]
 gi|260579016|ref|ZP_05846918.1| DNA restriction-modification system, DNA methylase [Corynebacterium
           jeikeium ATCC 43734]
 gi|68263917|emb|CAI37405.1| putative DNA restriction-modification system, DNA methylase
           [Corynebacterium jeikeium K411]
 gi|258602881|gb|EEW16156.1| DNA restriction-modification system, DNA methylase [Corynebacterium
           jeikeium ATCC 43734]
          Length = 671

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 9/102 (8%)

Query: 191 GSERLRNKDGEKLHP------TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           G  R    +   L P      T KPE LL RI+  +T PGDI+LD F GSGT+ AVA+K+
Sbjct: 382 GHNRTSKAEMNALFPNTAAFATPKPERLLERIIHIATNPGDIVLDVFAGSGTTAAVAQKM 441

Query: 245 RRSFIGIEMKQDYID-IATKRIASVQPLGNIELTVLTGKRTE 285
            R ++  E+ +D  +     R+  V  + N +   +T ++ E
Sbjct: 442 GRRWVTCELVEDTFNRFTRPRLEKV--INNEDQGGITVQKEE 481



 Score = 42.7 bits (99), Expect = 0.089,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 20/102 (19%)

Query: 26  GNSISVLEKLPA------KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           G+ +  L ++P         V  I+ DPP+N                    +++      
Sbjct: 83  GDVLEALTRIPEWSKKYVGKVKCIYIDPPFNTA--------------QTFANYEDNLEHS 128

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
            +    R  LL  R +L  +G++WV        R+  +L  +
Sbjct: 129 VWLTMMRDRLLHLRDLLSEDGSIWVHLDDVENHRMRVLLDEV 170


>gi|316983709|gb|EFV62690.1| DNA methylase family protein [Neisseria meningitidis H44/76]
          Length = 207

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 76/246 (30%), Gaps = 50/246 (20%)

Query: 31  VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
           ++ + P K  DL   DPPY + LN      D+         WD       ++   R    
Sbjct: 3   LMSRYPDKYFDLAIVDPPYGI-LNKTKRGGDYKFNMNEYSQWDIKPDQTYFNELFRVSKN 61

Query: 91  ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
                    G LW+   Y+  F                                      
Sbjct: 62  QIIWGGNYFGELWLRSEYNKGF-------------------------------------- 83

Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
            +IW    P+    T N  ++    E      D    I   S R   K+  K HPTQKP 
Sbjct: 84  -IIWDKNQPE----TLNNFSMA---EMAWSSFDRPSKIFRFSVR---KNRNKTHPTQKPV 132

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
            L   +L    K GD ILD   GSGT        +      E+  DY   + ++I +  P
Sbjct: 133 ELYQWLLKMYAKQGDKILDTHLGSGTLAIACCIAQFDLTACEINSDYYQQSIEKIKNNLP 192

Query: 271 LGNIEL 276
              I  
Sbjct: 193 EARISF 198


>gi|260654820|ref|ZP_05860308.1| adenine specific DNA methylase Mod [Jonquetella anthropi E3_33 E1]
 gi|260630535|gb|EEX48729.1| adenine specific DNA methylase Mod [Jonquetella anthropi E3_33 E1]
          Length = 524

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 1/111 (0%)

Query: 159 PKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG-EKLHPTQKPEALLSRIL 217
               G+T ++       +  +   D +    + S+ +    G +K  P  KPE L++RIL
Sbjct: 249 KSKNGWTLHHKVYMGNGKVQRSIVDDVGTNKTASDEMMYLFGDKKAFPYPKPEKLIARIL 308

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
             ST+P D++LD F GSGT+ AVA+K+ R +IGIEM          R+  V
Sbjct: 309 DLSTEPNDLVLDSFLGSGTTCAVAQKMNRRYIGIEMGDHAYTHCKVRLDKV 359



 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 64/173 (36%), Gaps = 24/173 (13%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQL 57
           +  K       +QN+    ++ II G+++  L+ L +K    V  I+ DPPYN       
Sbjct: 24  IEDKEKSNCTNDQNT----ENMIIHGDNLLALKALESKYAGKVKCIYIDPPYNTG----- 74

Query: 58  YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
                    +  + +D       + +     L +   +L+ +G ++V            +
Sbjct: 75  ---------SAFERYDDNLEHSTWLSLMNCRLHSLYTLLRKDGFMFVNLDEQEHAYAKIL 125

Query: 118 LQNL--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
           L ++      + D++W+K     N   R     H+ ++  +     + +   +
Sbjct: 126 LDSIFGRHNFIGDMIWKKRKGGGNDS-RYLALDHDYILVYAKDASKETHPRKW 177


>gi|29566890|ref|NP_818455.1| gp155 [Mycobacterium phage Omega]
 gi|29425615|gb|AAN12797.1| gp155 [Mycobacterium phage Omega]
          Length = 436

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 42/116 (36%), Gaps = 19/116 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I  G+   VL   P  SVD I  DPPY L   G+               WD         
Sbjct: 6   IRLGDCRGVLASFPDASVDAILTDPPYELGFMGK--------------KWDGSG-----I 46

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           AF       C RVLKP G L   G      R+   +++  F I + I W   +  P
Sbjct: 47  AFDVEMWEQCLRVLKPGGHLLAFGGSRTWHRLTVAIEDAGFEIRDSIAWLYGSGFP 102



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 1/75 (1%)

Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
             N+DG K+ H T KP  L+  +      PG +ILDPF GSGT+           I IE 
Sbjct: 360 YVNEDGAKVMHSTVKPLTLMRWLARLVCPPGGVILDPFAGSGTTVEACLLEGFDCIAIES 419

Query: 254 KQDYIDIATKRIASV 268
           + DYI +  +RI  V
Sbjct: 420 EADYIPLIEQRIERV 434


>gi|153869324|ref|ZP_01998964.1| DNA modification methylase [Beggiatoa sp. PS]
 gi|152074154|gb|EDN71040.1| DNA modification methylase [Beggiatoa sp. PS]
          Length = 115

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 2/83 (2%)

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
           + R++++S+  GD ILDPFFGSGT+  V ++L R  IG EM  +YI++   R+  +QP  
Sbjct: 1   MERMILASSNEGDTILDPFFGSGTTLRVCQQLNRKCIGFEMNPEYIELTKNRL--IQPFK 58

Query: 273 NIELTVLTGKRTEPRVAFNLLVE 295
             +      +R    +    + E
Sbjct: 59  GFDSVDPRMERVPLNLPKTEIRE 81


>gi|302390120|ref|YP_003825941.1| DNA methylase N-4/N-6 domain protein [Thermosediminibacter oceani
           DSM 16646]
 gi|302200748|gb|ADL08318.1| DNA methylase N-4/N-6 domain protein [Thermosediminibacter oceani
           DSM 16646]
          Length = 851

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 62/303 (20%), Positives = 112/303 (36%), Gaps = 78/303 (25%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
           ++L K   + V  I+ DPP+N     +    D+       DS         +       +
Sbjct: 417 TILPKFK-EKVQTIYIDPPFN-----KEQDADYYYTVKFKDS--------TWITMLENRI 462

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKS------------- 134
              + +L   G+++V   Y+    +  ++  +       N+IV  ++             
Sbjct: 463 SLGKELLNKRGSIFVRCDYNGNMYVRLLMNKVFGEENFRNEIVVNRTKKIFAGVRGYNVA 522

Query: 135 -------------NPMPNFRGR----RFQNAH--------ETLIWASPSPKAKGYTFNYD 169
                          +P ++ R    ++ N H        E +I        KG  + + 
Sbjct: 523 TDSLFFYSKDSDFYFVPQYKQREGKQKWINMHSPGERRPPERIILGRLFYPPKGRHWTFV 582

Query: 170 ALKAANEDVQMRS---------DWLIPICSGSERLRNKDGEKL---------------HP 205
             + A  + Q R          D L     G  +    + E L                P
Sbjct: 583 QERIAELERQGRIRIYEEAEYIDMLGNKVQGMPQYLTGEMELLDSSWTDIPGYSQICGFP 642

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           T+  E LL R++ S++K GD+++D F GSGT+ AVA KL+R +IG+EM + +  +   R+
Sbjct: 643 TENSEILLKRVIESTSKEGDLVMDFFLGSGTTTAVAHKLKRKWIGVEMGEHFYTVVLPRM 702

Query: 266 ASV 268
             V
Sbjct: 703 KKV 705


>gi|145978|gb|AAA23784.1| 'ORF2' [Escherichia coli]
          Length = 100

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 14/99 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            II G++++ L+ +PA+SVDLIFADPPYN+  N           D + ++W +    + +
Sbjct: 16  TIIHGDALAELKNIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
             +    +  C RVLK  G+++++ S  N+  I    + 
Sbjct: 62  IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRK 100


>gi|57505716|ref|ZP_00371642.1| adenine specific DNA methyltransferase (mod) [Campylobacter
           upsaliensis RM3195]
 gi|57015989|gb|EAL52777.1| adenine specific DNA methyltransferase (mod) [Campylobacter
           upsaliensis RM3195]
          Length = 650

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 3/102 (2%)

Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH-PTQKPEALLSRILVSSTKPGDII 227
             +   NE + +R D+      G     NK+G       QKPE L+  I+ ++T+  D++
Sbjct: 425 WKMNDENEIISLRGDFWDCKYDGDMGNINKEGFTKFGQGQKPERLIMDIIKATTQENDLV 484

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRIASV 268
           +D F GSGT+ AVA K++R FIGIE + DYI+ I  +R+  V
Sbjct: 485 MDFFAGSGTTLAVAMKMKRRFIGIE-QMDYIESITKERLKKV 525



 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 53/176 (30%), Gaps = 17/176 (9%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + +IKGN++  L  L    A  V LI+ DPPYN   +   Y              D F +
Sbjct: 161 NLLIKGNNLLCLHSLKKKFANQVKLIYIDPPYNTGNDSFNY-------------NDNF-N 206

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
              +  F +  L   R  L+ +G +++    +    +  +   +         +     +
Sbjct: 207 HSTWLCFMKNRLEIAREFLRDDGVIFIQCDDNEQAYLKVLCDEIFNGGGGGNNFVGCVAV 266

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
                   +     + +         Y      +    + +           +G E
Sbjct: 267 KMTPSSGVKRRFANIKFIKNKEYLLIYKKREININPLYDVINNYDPHYSIYFNGKE 322


>gi|254466011|ref|ZP_05079422.1| adenine specific DNA methylase Mod [Rhodobacterales bacterium Y4I]
 gi|206686919|gb|EDZ47401.1| adenine specific DNA methylase Mod [Rhodobacterales bacterium Y4I]
          Length = 508

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 58/142 (40%), Gaps = 5/142 (3%)

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
                 D +    +  + +    G     T KPE L+ RIL  +T PGD++LD F GSGT
Sbjct: 271 WSWWPHDEVGHTGAAKQEVNAIFGADSFDTPKPERLIQRILHIATNPGDLVLDSFLGSGT 330

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASV---QPLGNIELTVLT--GKRTEPRVAFN 291
           + AVA K+ R +IG+EM          R+  V   +  G  E       G      +   
Sbjct: 331 TAAVAHKMGRRWIGVEMGDHARTHCALRLKKVIEGEQGGISEDVQWQGGGGFRFCELGQA 390

Query: 292 LLVERGLIQPGQILTNAQGNIS 313
           +  E G I P     +   ++ 
Sbjct: 391 VFDEEGRIDPEIRFADLARHVW 412



 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 58/192 (30%), Gaps = 19/192 (9%)

Query: 23  IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +++G+++  L+ L       V  I+ DPPYN +              +  + +D      
Sbjct: 40  LVQGDNLDALKALLPFYAGQVKCIYIDPPYNTR--------------SAFEKYDDSLEHA 85

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            +       L+  R  L  +G++WV    +    +  ++  +                  
Sbjct: 86  KWLGMIVPRLILLREFLSEDGSIWVNIDDNEGHYLKVIMDEIFGRKKFVANIAWQKRYSR 145

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ--MRSDWLIPICSGSERLRN 197
                  + HE ++  +   +      N        +       +D   P  S S     
Sbjct: 146 DSNTAIGDVHEHILIYARDFEKFKTVRNRVEPDERTKKAYTNPNNDPKGPWQSISFTGAG 205

Query: 198 KDGEKLHPTQKP 209
                ++P + P
Sbjct: 206 YRANMMYPIEGP 217


>gi|332884368|gb|EGK04635.1| hypothetical protein HMPREF9456_03411 [Dysgonomonas mossii DSM
           22836]
          Length = 265

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 24/138 (17%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           ++K  KG+ I +++ LP +SVD+I  DPPY    N +L R                  F+
Sbjct: 5   RNKSYKGDCIELMKYLPDESVDVICTDPPYLYLKNQKLDR-----------------HFD 47

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                   +    +RVLK +G + + G   + +R  T+L +L F    +I+W KS     
Sbjct: 48  E-----TEYFNQVKRVLKKDGFIILFGRGTSFYRWNTILADLGFAFKEEIIWDKSYCSSP 102

Query: 140 FRGRRFQNAHETLIWASP 157
                    HET+   + 
Sbjct: 103 LMA--MSRVHETVSIHTK 118


>gi|118575740|ref|YP_875483.1| DNA modification methylase [Cenarchaeum symbiosum A]
 gi|118194261|gb|ABK77179.1| DNA modification methylase [Cenarchaeum symbiosum A]
          Length = 339

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 39/68 (57%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
              HP   P  +++  +   T  G ++LDP+ GSGT+G  A+ L RSF+GIE+   Y   
Sbjct: 271 WNAHPAIYPVGIIAEFIRLLTPKGAVVLDPYMGSGTTGVAARSLGRSFMGIELNAGYCRA 330

Query: 261 ATKRIASV 268
           A KRI++ 
Sbjct: 331 ANKRISAA 338



 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 63/168 (37%), Gaps = 21/168 (12%)

Query: 15  SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           S+  + + +  G+S  +L+ +P+ SVDL+   PPY  Q +    R  +            
Sbjct: 13  SLAPFLNTVRCGDSAKMLKDVPSGSVDLVITSPPYYQQRDYGGGRTGNE----------- 61

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNIFRI-----GTMLQNLN---FWI 125
               EAY          C RV K  G++ + +G  ++   +        ++        +
Sbjct: 62  -GHVEAYIDSIMQVFEQCVRVTKETGSIVFNMGDKYSQGSLMLVPYRFAIRATGSGAVRL 120

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
           +N+  W K+NP P    RR  +  E     + S        ++   + 
Sbjct: 121 VNNTTWVKTNPTPRQFKRRLVSGTEPFFHFAKSDSYCYNIDDFQRPET 168


>gi|159904415|ref|YP_001548077.1| DNA methylase N-4/N-6 domain-containing protein [Methanococcus
           maripaludis C6]
 gi|159885908|gb|ABX00845.1| DNA methylase N-4/N-6 domain protein [Methanococcus maripaludis C6]
          Length = 327

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/217 (21%), Positives = 77/217 (35%), Gaps = 16/217 (7%)

Query: 53  LNGQLYRPDHSLVDAVTDSW-DKFSSFEAYDAFTRAWLLACR-RVLKPNGTLWVIGSYHN 110
            + +  + ++SL + +   + + F     Y  F        +   L  NG          
Sbjct: 124 YSNEYRKNNNSLNNPMYREYVENFKPIIEY--FMEEKEKIMKLHNLNTNGDFIRFMD--E 179

Query: 111 IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
                T  ++   W        K+       G         L         K +    ++
Sbjct: 180 YMESTTPARHHFSWSQWTFPSAKTYAKLQRIGNGILEKEYPLFKTHYEDLKKQF----ES 235

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
            +    + +       P  S   R  N      HPTQKP  L   ++ ++TKP  ++L P
Sbjct: 236 SRRYFVNSEHTDVLFFPQESHITRKYN------HPTQKPPKLSKMLIEATTKPESLVLVP 289

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           F GSG      K L R+FIG E+ ++Y +IA KRI  
Sbjct: 290 FVGSGVECLSCKDLERNFIGFEIDENYFEIAKKRINE 326



 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 96/243 (39%), Gaps = 33/243 (13%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I   +    ++ LP  SVDLI ADPPY                  +   +D   +F+ 
Sbjct: 4   NEIYNQDFFEGVKNLPDNSVDLIIADPPY----------------YNIKGDFDFRLTFDE 47

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP--MP 138
           +           +RVLK NG++ + G   NI     +  +L F++ N++VW K++     
Sbjct: 48  WKDMHEKMAKEFKRVLKLNGSILLYGHAKNIAYQQVIFDDL-FFLENNLVWHKTDCQTRK 106

Query: 139 NFRGRRF-QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           N +G R      E +++ S   +    + N    +   E+ +   ++ +       +L N
Sbjct: 107 NIKGYRCFAPVTERILFYSNEYRKNNNSLNNPMYREYVENFKPIIEYFMEEKEKIMKLHN 166

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK---KLRRSFIGIEMK 254
            +             +   + S+T         F  S  +   AK   KL+R   GI ++
Sbjct: 167 LNTNGDF-----IRFMDEYMESTTPARHH----FSWSQWTFPSAKTYAKLQRIGNGI-LE 216

Query: 255 QDY 257
           ++Y
Sbjct: 217 KEY 219


>gi|150401965|ref|YP_001329259.1| DNA methylase N-4/N-6 domain-containing protein [Methanococcus
           maripaludis C7]
 gi|150032995|gb|ABR65108.1| DNA methylase N-4/N-6 domain protein [Methanococcus maripaludis C7]
          Length = 325

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 40/62 (64%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPTQKP  L   ++ ++TKP  ++L PF GSG      K+L R+FIG E+ ++Y +IA  
Sbjct: 263 HPTQKPPKLTKMLIEATTKPESLVLVPFVGSGVECVTCKELERNFIGFEIDENYFEIAKN 322

Query: 264 RI 265
           R+
Sbjct: 323 RL 324



 Score = 69.6 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 73/180 (40%), Gaps = 20/180 (11%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I   +    ++KL   SVDLI ADPPY                  +   +D   +F+ 
Sbjct: 4   NEIYNQDFFEGVKKLSNNSVDLIIADPPY----------------YNIKGDFDFKLNFDE 47

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP--MP 138
           +           +RVLK NG++ + G   NI     +  +L F++ N++VW K++     
Sbjct: 48  WKILHEKMAKEFKRVLKLNGSILLYGHARNIAYQQVIFDDL-FFLENNLVWHKTDCQTRK 106

Query: 139 NFRGRRF-QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           N +G R      E +++ S   +    + N    +   E  +   ++ +       +L N
Sbjct: 107 NIKGYRCFAPVTERILFYSNEFRKNNNSLNNPMYREYVETFKPIIEYFMEEKEKIMKLHN 166


>gi|306823148|ref|ZP_07456524.1| DNA (cytosine-5-)-methyltransferase [Bifidobacterium dentium ATCC
           27679]
 gi|309801507|ref|ZP_07695632.1| DNA (cytosine-5-)-methyltransferase [Bifidobacterium dentium
           JCVIHMP022]
 gi|304553780|gb|EFM41691.1| DNA (cytosine-5-)-methyltransferase [Bifidobacterium dentium ATCC
           27679]
 gi|308221819|gb|EFO78106.1| DNA (cytosine-5-)-methyltransferase [Bifidobacterium dentium
           JCVIHMP022]
          Length = 294

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 96/275 (34%), Gaps = 26/275 (9%)

Query: 18  EWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF- 75
           E KD  +  G+S   + +L   SVDL  + PP++          D        D  + + 
Sbjct: 13  EGKDWTLWLGDSCVRMGELDDNSVDLSVSSPPFSSLYVYSDSIRDLGNNPTRKDFIENYG 72

Query: 76  SSFEAYDAFTRAWLLACRRV-----LKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI- 129
                    T+   LAC  V      K    +  +  +     +     +  +    ++ 
Sbjct: 73  YVILELLRITKPGRLACVHVQQVATTKTADGVVGLTDFRGD--VIKAYVDNGWIFHGEVT 130

Query: 130 ---------VWRKSNPMPNFRGRRFQNAHET------LIWASPSPKAKGYTFNYDALKAA 174
                    +  K+  +      +  +          L++  P   A     +    +  
Sbjct: 131 VNKNPQAQAIRTKAQALMFVTKNKDSSMSRPALADYLLLFRKPGDNAVPIKNDVSNEEWI 190

Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
                +  D +    + +ERL  +D ++ H      + + R +   +  G+++ DPF G 
Sbjct: 191 KWAEPVWWD-IRETDTLNERLGREDTDERHICPLQLSFIERCIRLWSNKGELVFDPFGGI 249

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           G++   A KL R  + IE+K  Y   + + + +++
Sbjct: 250 GSTVYEAIKLGRRGLSIELKPSYWKASVELMRNLE 284


>gi|19908853|gb|AAM03023.1|AF472611_4 M.BcnIA [Brevibacillus centrosporus]
          Length = 294

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 57/123 (46%), Gaps = 3/123 (2%)

Query: 169 DALKAANEDVQMRSDWL---IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
                 + +     +W+   + +   +   R+   +K+HP   P +L  + +   T  G+
Sbjct: 19  CVCPTKHINCMTGKEWMKSQLGVWRFTYERRDIRDKKVHPAVYPISLAKKCIELFTHQGE 78

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           +++DPF GSGT+   A+   R+ +G ++K++YI +   R+   + L N+    +  K   
Sbjct: 79  LVIDPFVGSGTTLVAAQDSNRNAVGFDLKEEYISLCQIRLEENRNLLNVNTNQIAIKDNA 138

Query: 286 PRV 288
             +
Sbjct: 139 KNI 141



 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 61/189 (32%), Gaps = 29/189 (15%)

Query: 7   LAINENQNSIFEWKDKI-IKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPD 61
           + + EN+N +    ++I IK N+ ++   +   SV LI   PPY    N +   +  R  
Sbjct: 116 IRLEENRNLLNVNTNQIAIKDNAKNIKHYIKENSVSLILTSPPYANLLNRKRKNKSRRNR 175

Query: 62  HS-----LVDAVTDSWD-KFSSFEAYDAFTRAWLLACRRVLKPNGTL--------WVIGS 107
            +     +     D  D      + Y    +    +   +LK  G          W    
Sbjct: 176 KNEQFLQIEQYSQDPNDLGVMELDEYTETIKNIYGSLLPLLKSKGHCVVNVPDFWWDNKR 235

Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
                 I   L  + + + N I+W ++N +              +     +    G TF 
Sbjct: 236 ITLHISIINALTEVGYELRNTIIWDRTNIVNGIG----------IFGWPSNYITMGTTFE 285

Query: 168 YDALKAANE 176
           Y       E
Sbjct: 286 YLLHFWKPE 294


>gi|331006812|ref|ZP_08330073.1| Type III restriction-modification system methylation subunit [gamma
           proteobacterium IMCC1989]
 gi|330419380|gb|EGG93785.1| Type III restriction-modification system methylation subunit [gamma
           proteobacterium IMCC1989]
          Length = 298

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 2/121 (1%)

Query: 150 ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN--KDGEKLHPTQ 207
           E  IW   +  ++    NY +  +  +     S+        +++  N     +    T 
Sbjct: 33  ENKIWFGKNGDSRPRQKNYLSEASGVKSWSWWSNKEAGHNQEAKKEINVLFGADNAFDTP 92

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           KPE L+ R+L  ++  GD+ILD F GS ++ AVA K+ R +IGIE+ +        R+  
Sbjct: 93  KPERLMQRVLHIASNEGDLILDSFLGSASTVAVAHKMNRRYIGIELGEHAKTHCQPRLQK 152

Query: 268 V 268
           V
Sbjct: 153 V 153


>gi|322835213|ref|YP_004215239.1| DNA methylase N-4/N-6 domain protein [Rahnella sp. Y9602]
 gi|321170414|gb|ADW76112.1| DNA methylase N-4/N-6 domain protein [Rahnella sp. Y9602]
          Length = 351

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 72/188 (38%), Gaps = 20/188 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAY 81
           II  +S+  ++ LP   +DLI  DPPY                   +  WD ++    AY
Sbjct: 12  IICADSLQYIKTLPDDCIDLIATDPPYF---------------RVKSCKWDNQWPDESAY 56

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+         R+LKP+G+L+V            +++   F ILN I+W K +   N +
Sbjct: 57  LAWLDEVFAEFWRILKPSGSLYVFCGSRLAADTELLMRE-RFKILNHIIWAKPSGPWNRQ 115

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC---SGSERLRNK 198
            +    ++          +     +   +   + E  + R + L P+    S + +    
Sbjct: 116 HKEDLRSYFPATERILFAEHYRGPYRGKSSSYSIECQEQRKNTLKPLVEYFSNARKALGI 175

Query: 199 DGEKLHPT 206
             +++H  
Sbjct: 176 TAKEIHQA 183



 Score = 73.1 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 37/56 (66%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           HP +KP  ++  I+ +S++PGD++ D F GSG++   A KL R  +G+E++++   
Sbjct: 282 HPCEKPAEMMRDIISASSRPGDVVADFFMGSGSTIKEAIKLGRFALGVELEEERYK 337


>gi|121610646|ref|YP_998453.1| DNA modification methylase-like protein [Verminephrobacter eiseniae
           EF01-2]
 gi|121555286|gb|ABM59435.1| DNA modification methylase-like protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 131

 Score = 85.0 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 47/125 (37%), Gaps = 15/125 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I+ GN ++VL  LP ++VD +  DPPY +       R    + +   DSW         
Sbjct: 3   RIVLGNCLTVLPTLPDRAVDFVLTDPPYLVDYQD---REGRRIANDTDDSW--------- 50

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                       R+L+ +        +  + R  +  +   F +   IV+ K   +P   
Sbjct: 51  ---LLPAFREIHRILRDDAFCISFYGWSRVDRFFSAWRAAGFRVAGHIVFAKPYLVPRPT 107

Query: 142 GRRFQ 146
           GR   
Sbjct: 108 GRNPT 112


>gi|147677858|ref|YP_001212073.1| adenine specific DNA methylase Mod [Pelotomaculum thermopropionicum
           SI]
 gi|146273955|dbj|BAF59704.1| adenine specific DNA methylase Mod [Pelotomaculum thermopropionicum
           SI]
          Length = 697

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 93/252 (36%), Gaps = 12/252 (4%)

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
             +++   + Y  +T  ++    +   P+G  + I  +          Q    +   D  
Sbjct: 218 KGNEYIFNKQYTEYTEEYINDFYKYYTPDGRRYRISDFTQ------AGQGPGAYFGKD-- 269

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
             KSN +    G+ +    E +     + K    + N   L    +++       I    
Sbjct: 270 -GKSNYIEPPAGKHWIWGQEKITKGVNTGKIILSSNNVPGLIRYLDEMPGNPVRDI-WTD 327

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
            +    + +    + TQKPE LL RI+ +S+  G ++ D F GSG + AVA KL R FI 
Sbjct: 328 INAMGPSSNEATDYTTQKPEVLLERIIKASSNEGMLVADFFGGSGVTAAVANKLGRRFIH 387

Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQG 310
            ++  + I     R+  +      ++  +    +  R     + +   + PG        
Sbjct: 388 CDIGINSIQTTRDRL--IADKAEFDIYEIKDGVSLYRNPAQTMEKIKKLIPGLKNEEGLS 445

Query: 311 NISATVCADGTL 322
           +  A   +D  L
Sbjct: 446 DFWAGAISDSKL 457



 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 74/206 (35%), Gaps = 30/206 (14%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKS--VDLIFADPPYNLQLNGQLY--- 58
           K    + +N N      + +I+G  IS    L  +   VDL++ DPP+    +       
Sbjct: 48  KKVETVGKNPNG-----NMLIRGECISACAYLKEQGIEVDLVYIDPPFASGADYAKKVYI 102

Query: 59  RPDHSLVDAVTDS----------------WDKFSSFEAYDAFTRAWLLACRRVLKPNGTL 102
           R +  + +A+  +                +      E Y  +    L+A + V+    ++
Sbjct: 103 RRNPKVAEAIARAEQELDIEELRAFEEKMYGDIWRKEDYLNWMYENLMAIKSVMSEMASI 162

Query: 103 WVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
           +V   +H    +  ++  +       + +  +    P  +  +F N H+T+++     + 
Sbjct: 163 YVHLDWHIGHYVKILMDEVFGEDNFINEIIWQKTTSPKAQSGKFSNVHDTILFYKKGNE- 221

Query: 162 KGYTFNYDALKAANEDVQMRSDWLIP 187
             Y FN    +   E +     +  P
Sbjct: 222 --YIFNKQYTEYTEEYINDFYKYYTP 245


>gi|5579431|gb|AAD45552.1|U70376_17 SpcG [Streptomyces netropsis]
          Length = 272

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 88/249 (35%), Gaps = 37/249 (14%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
             GNS+ +++ +P  SVD +   PP+     G     D                 +A+ A
Sbjct: 21  HWGNSLELMKGIPDASVDAVVCSPPF----EGDALISDEGRRG------------DAFVA 64

Query: 84  FTRAWLLACRRVLKPNGT-------LWVI---GSYHNIFRIGTMLQNLNFWILNDIVWRK 133
           +   +    +RVL+P G        +W+    G           L    + ++ D  +  
Sbjct: 65  WIEPFFRQFQRVLRPAGCVAFELGGIWLSDAPGKAVQHASALRALVASGWRLVQDFYYYN 124

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR-----SDWLIPI 188
              +    G     A +++       +     ++ +AL+  +    +R      D   P 
Sbjct: 125 PQLLQPQPGG-PPRAADSVTPVWVMARTHDVHYDVEALRRGDRRSVVRGNLLEFDSSGPW 183

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS---GTSGAVAKKLR 245
               E+   +   + +  + P A+    +   T+P      P  GS   G +   A++LR
Sbjct: 184 DQAYEKALARQRLEPYGDRWPTAVPELFIELLTRPRWTG--PRPGSPAPGATCFAAERLR 241

Query: 246 RSFIGIEMK 254
           R +IG+E  
Sbjct: 242 RRWIGVERD 250


>gi|325982147|ref|YP_004294549.1| DNA methylase N-4/N-6 domain-containing protein [Nitrosomonas sp.
           AL212]
 gi|325531666|gb|ADZ26387.1| DNA methylase N-4/N-6 domain protein [Nitrosomonas sp. AL212]
          Length = 565

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 6/91 (6%)

Query: 183 DWLIPICSGSERLRNKDGEKLHP-----TQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
            WL     G  +  +++   L P     T KPE+LL RI+  +T   D++LD F GSGT+
Sbjct: 294 VWLHDEV-GHNQDASREIRTLFPDDAFGTPKPESLLRRIIHLATNSNDLVLDSFAGSGTT 352

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           GAVA K+ R +I +E+ +        R+  V
Sbjct: 353 GAVAHKMGRRWIMVELGEHCHTHIIPRLQKV 383



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 58/174 (33%), Gaps = 22/174 (12%)

Query: 19  WKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + +++I G+++  L+ L A+    V  IF DPPYN                +    +D  
Sbjct: 45  FDNRLIFGDNLLALKALEAEFAGKVKCIFIDPPYNTG--------------SAFTHYDDG 90

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
                + +  R  L   RR+L  +GTLW+    +    +  +   +   +          
Sbjct: 91  VEHSIWLSLMRDRLEIIRRLLSEDGTLWITIDDNEAHYLKVLCDEVFGRVNFVANVVWQK 150

Query: 136 PMPNFRGRR-FQNAHETLIWASPSPKAKGYTF----NYDALKAANEDVQMRSDW 184
                       ++H+ ++  +       +      +    K  N D   R  W
Sbjct: 151 AYGPRSNAHLISDSHDHILVFAKDKPKASFALLERSDEQTAKYRNPDNDPRGPW 204


>gi|192292172|ref|YP_001992777.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Rhodopseudomonas palustris TIE-1]
 gi|192285921|gb|ACF02302.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Rhodopseudomonas palustris TIE-1]
          Length = 566

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 3/129 (2%)

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANE---DVQMRSDWLIPICSGSERLRNKD 199
           R  ++  E ++W   + + +         K             D +             +
Sbjct: 248 RHKKHVEENMLWWGKNGEQEKPRIKVFLSKVGEGVVPSTIWLRDEVGDNQDARREAMALN 307

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
            E    T KPE+L+ +++  +T PGD++LD F GSGT+GAVA K+ R +I +E+    + 
Sbjct: 308 SEGSFSTPKPESLIRQMVSIATAPGDLVLDSFAGSGTTGAVAHKMGRRWIMVELGDHAVT 367

Query: 260 IATKRIASV 268
               R+  V
Sbjct: 368 HIVPRLKLV 376



 Score = 67.3 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 58/159 (36%), Gaps = 20/159 (12%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSL 64
           ++  ++  IF+  + +I+G+++  L+ L A     +  +  DPPYN              
Sbjct: 36  SVRHSEADIFD--NLLIQGDNLLALKALEASYTGRIKCVIIDPPYNTG------------ 81

Query: 65  VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NF 123
             +    +D       + +  R  L   RR++  +G+LW+    +    +  +   +   
Sbjct: 82  --SAFKHYDDGLEHSLWLSLMRDRLDLIRRLMSEDGSLWITIDDNEAHYLKILCDEVFGR 139

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
                 V  +         + F  +H+ ++  + +    
Sbjct: 140 SNFVANVVWQKKYSKQNDAKHFSTSHDHILVFAKNKNEW 178


>gi|301321463|gb|ADK70106.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 493

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 71/164 (43%), Gaps = 18/164 (10%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKS--VDLIFADPPYNLQLNGQLY 58
           + + N + INEN         KI   +S  ++E+    S  V+ I  DPPYN+  +   +
Sbjct: 325 IKKINEIYINENI--------KIYNADSYKIVEQFINNSTKVNHIITDPPYNISQSNNFH 376

Query: 59  RPDHSLVDAVT-DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
               +    +    WD       YD    +W+    ++L  NG++ +  SY  I  I   
Sbjct: 377 TLRSANRQGLNFGKWD-------YDFDLISWIKPYSKLLDKNGSMIIFCSYKYISFIIEE 429

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
           L++    I + I W K+NPMP    RR+    E  IWA    ++
Sbjct: 430 LESNMLEIKDVIKWVKTNPMPRNVNRRYVQDTEYAIWAVKKNQS 473


>gi|16802514|ref|NP_463999.1| hypothetical protein lmo0470 [Listeria monocytogenes EGD-e]
 gi|224502230|ref|ZP_03670537.1| hypothetical protein LmonFR_06869 [Listeria monocytogenes FSL
           R2-561]
 gi|16409847|emb|CAC98549.1| lmo0470 [Listeria monocytogenes EGD-e]
          Length = 209

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 75/199 (37%), Gaps = 19/199 (9%)

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
                +   R++K NG +  I +    F       N++  +  + +W K+    +   ++
Sbjct: 4   LEKLWIQYDRIIKENGAI--ILTAQTPFDKVLGASNIDN-LRYEWIWEKTAATGHLNAKK 60

Query: 145 FQ-NAHETLI-WASPSPKAKGYTF------NYDALKAANEDVQMRSDWLIPICSGSERLR 196
               AHE ++ +    P             +    K  +     R+   I     +ER  
Sbjct: 61  MPLKAHENILVFYKKLPIYNPQKTVGHTAVHSYTKKQTDGSNYGRTKAGITGGGSTERYP 120

Query: 197 --------NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
                   +K    LHPTQKP AL   ++ + T  G ++L    GSGT+        R +
Sbjct: 121 RSVLTFKSDKQKSSLHPTQKPVALFEYLIKTYTNEGGLVLYNCMGSGTTAIACLNTNRKY 180

Query: 249 IGIEMKQDYIDIATKRIAS 267
           IG E    + + +  RIA+
Sbjct: 181 IGFETDVGHYESSLSRIAN 199


>gi|218673725|ref|ZP_03523394.1| DNA modification methylase M.SthI [Rhizobium etli GR56]
          Length = 282

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 53/271 (19%), Positives = 86/271 (31%), Gaps = 76/271 (28%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
             +++S + +LP   +D I   PPY  Q +             V     +  + +AY   
Sbjct: 17  NDDALSGVRRLPDNFIDCIVTSPPYYWQRDY-----------GVDGHTGQEDTIDAYVEA 65

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNI--------------------------------- 111
            R+      RVLKP+GT +V+                                       
Sbjct: 66  LRSVFSEALRVLKPSGTAFVVLGDTYYSGKGQPRGGDPKQTWRGVARQKYRAVDRPGFGV 125

Query: 112 ---------FRIGTMLQNLNFWILNDIVWRKSNPMP-NFRGRRFQNAHETLIWASPSPKA 161
                    +R+   LQN  + + + ++WRK+ P+       R     ET+   + +   
Sbjct: 126 PKKSLLGVPWRVALALQNSGWVLRSCVIWRKTKPLAEPSVRDRPWTTTETIFILTKTG-- 183

Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
             Y F+   L    +       W IP  +  +R R       H    PEAL+ R L +  
Sbjct: 184 -RYYFDRGGLAGQED------VWDIPARNALKRYR-------HAAPFPEALVERCLAAGM 229

Query: 222 KPGD---IILDPFF---GSGTSGAVAKKLRR 246
                    L  F    G G+    A    R
Sbjct: 230 PERGRRARSLRGFGNDLGCGSQPRAAISRHR 260


>gi|18202054|sp|O52513|MTS1_STRFI RecName: Full=Modification methylase SfiI; Short=M.SfiI; AltName:
           Full=N-4 cytosine-specific methyltransferase SfiI
 gi|2761010|gb|AAB95366.1| SfiI methyltransferase [Streptomyces fimbriatus]
          Length = 421

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 58/171 (33%), Gaps = 41/171 (23%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS-FEAY 81
           +  G+S+  L KLP +S++ +   PPY             ++ D   D         + Y
Sbjct: 31  LYVGDSLDCLAKLPDESINTVVTSPPY------------WAVRDYEHDEQLGLEDEVDDY 78

Query: 82  DAFTRAWLLACRRVLKPNGTLW-VIGSYHNI------------------------FRIGT 116
                       RVL  +G+ W  IG  +                          FR+  
Sbjct: 79  VERLVKIFREVYRVLATDGSAWLNIGDSYFNKQITVGGKPPRTGWKRNKQLSLVPFRVAL 138

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
            LQ+  +WI N  VW K N MP     R     E +   +    ++ Y FN
Sbjct: 139 ALQDDGWWIRNVAVWHKPNAMPASVRDRLTVTWEPVFLLTK---SERYYFN 186



 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 28/54 (51%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           H    P  L    L ++       LDPF GSGT+G V ++L   F+G+++ + Y
Sbjct: 349 HFAVMPRKLAHFALKATLPMNGSCLDPFMGSGTTGRVVRELGGRFVGVDVNEHY 402


>gi|332656326|ref|YP_004301628.1| methyltransferase [Tetragenococcus halophilus]
 gi|332656391|ref|YP_004306083.1| methyltransferase [Tetragenococcus halophilus]
 gi|326324639|dbj|BAJ84466.1| methyltransferase [Tetragenococcus halophilus]
 gi|326324669|dbj|BAJ84495.1| methyltransferase [Tetragenococcus halophilus]
          Length = 534

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 9/191 (4%)

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           E Y       L    +V            ++          N+N +I  ++V  + N   
Sbjct: 225 EQYPNIEFLGLSEMYKVSNEFKEFVDDYQHNIFRYDKVTGFNINNFIEGEVVRVERNGRE 284

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
            +  R+  N+ E L++      + GY+ ++ +     +   +R DW          +  +
Sbjct: 285 YYLERK-SNSIEQLMFL---GASYGYSNDFFSTYGFRK---IRGDWWSGYYLDMGNVNKE 337

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
              KL   +KPE L+  +++S TK  +I+LD F GSGTS A A K +R FIG+E + DYI
Sbjct: 338 GNVKLSSGKKPERLIYDLIISLTKKEEIVLDFFMGSGTSIAAALKTQRQFIGLE-QLDYI 396

Query: 259 -DIATKRIASV 268
            D+A +R  +V
Sbjct: 397 EDLAIERFKNV 407



 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 59/171 (34%), Gaps = 24/171 (14%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQL 57
           M + N+    +N     +  + IIKGN++  L  L       V LI+ DPPYN   +   
Sbjct: 34  MKKYNANG-EQNIIKFNDTDNLIIKGNNLIALHTLKERYAGKVKLIYIDPPYNTGGDSFK 92

Query: 58  YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
           Y              D+F+    +  F +  L     +LK +G + +    +    +  +
Sbjct: 93  Y-------------NDRFNR-STWLTFMKNRLKVAFSLLKEDGVIVIQTDNNENHYLKVL 138

Query: 118 LQNLN------FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
              +         +  ++   +   +   +        E L++ S   +  
Sbjct: 139 CDEIFGNNKFVTQVCVEMSATQGMKVAAAKNGGIVKNTEYLLFYSKDGRKN 189


>gi|317182610|dbj|BAJ60394.1| putative type III restriction enzyme M protein [Helicobacter pylori
           F57]
          Length = 611

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/64 (54%), Positives = 46/64 (71%), Gaps = 2/64 (3%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKR 264
           T KPEAL+SRIL  ST   D++LD F GSGT+ AVA K++R +IGIE + DYI+ I  +R
Sbjct: 429 TPKPEALISRILEVSTNENDLVLDFFAGSGTTCAVAHKMKRRYIGIE-QMDYIETITKER 487

Query: 265 IASV 268
           +  V
Sbjct: 488 LKKV 491



 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 56/149 (37%), Gaps = 23/149 (15%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            + +IKGN++  L  L    AK V  I+ DPPYN   +   Y              D F 
Sbjct: 164 TNYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNY-------------NDNF- 209

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRK-- 133
           +  ++  F +  L   R  L  +G ++V    +    +  ++  +      + I+WRK  
Sbjct: 210 NHSSWLVFMKNRLEVAREFLSDDGVIFVQCDDNEQAYLKVLMDEIFGRENFDAIIWRKIE 269

Query: 134 ---SNPMPNFRGRRFQNAHETLIWASPSP 159
              S+          +  HE ++    + 
Sbjct: 270 ENASSGGTMKITHTIRKDHEYILIYYKNK 298


>gi|71559071|ref|YP_271798.1| putative adenine-specific DNA methylase [Salmonella enterica]
 gi|68166370|gb|AAY88131.1| putative adenine-specific DNA methylase [Salmonella enterica]
          Length = 157

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 65/166 (39%), Gaps = 21/166 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I GN + ++   P ++VD I  DPPY +       R   S+    TD W + +  + Y
Sbjct: 3   RLILGNCVDIMSGFPERAVDFILTDPPYLVGFRD---RSGRSIAGDRTDEWLQPACNQMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNF 140
                       RVLK +  L     ++ + R     ++  F ++  +V+ K+      +
Sbjct: 60  ------------RVLKKDALLVSFYGWNRVDRFMAAWKSAGFSVVGHLVFTKNYSSKSAY 107

Query: 141 RGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
            G R + A+        +  +P P   G+ ++ +      +     
Sbjct: 108 VGYRHECAYVLAKGRPALPQNPLPDVLGWKYSGNRHHPDGKARYQP 153


>gi|207110299|ref|ZP_03244461.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
           pylori HPKX_438_CA4C1]
          Length = 114

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 2/106 (1%)

Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL 305
           R FIGIE    YI  A KR+ + +   +  +T L  +   P++  +LL+ + L++ G  L
Sbjct: 1   RYFIGIEKDSFYIKEAAKRLNNTRDKSDF-ITNLELETKPPKIPMSLLISKQLLKIGDFL 59

Query: 306 TNAQGNISATVCADGTLISG-TELGSIHRVGAKVSGSETCNGWNFW 350
            +        V  +G +        SIH++ AK     T    NF+
Sbjct: 60  YSPNKEKICQVLENGQVRDNENYETSIHKMSAKYLNKTTIMAGNFF 105


>gi|37527291|ref|NP_930635.1| hypothetical protein plu3417 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36786725|emb|CAE15791.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 185

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 44/81 (54%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  L++ I+ SS++ GD++ D F GSG++   A KL 
Sbjct: 102 VPYTDVWSFPPVQYYPGKHPCEKPADLMAHIIRSSSREGDLVADFFMGSGSTLKAALKLN 161

Query: 246 RSFIGIEMKQDYIDIATKRIA 266
           R  +G+E++++Y +   + I 
Sbjct: 162 RRVLGVELEEEYFNQTKREIG 182


>gi|57238177|ref|YP_178742.1| type III restriction/modification enzyme, methylase subunit
           [Campylobacter jejuni RM1221]
 gi|205355478|ref|ZP_03222249.1| Type III RM methylase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|57166981|gb|AAW35760.1| type III restriction/modification enzyme, methylase subunit
           [Campylobacter jejuni RM1221]
 gi|205346712|gb|EDZ33344.1| Type III RM methylase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|315058042|gb|ADT72371.1| Type III restriction-modification system methylation subunit
           [Campylobacter jejuni subsp. jejuni S3]
          Length = 675

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/74 (47%), Positives = 49/74 (66%), Gaps = 3/74 (4%)

Query: 197 NKDGEKLHP-TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
            K+G+      +KPEALL RI+  ST   DI++D F GSGT+ AVA K++R +IGIE + 
Sbjct: 478 TKEGDTQFSNAKKPEALLQRIIEISTNENDIVMDFFAGSGTTLAVAHKMKRKWIGIE-QM 536

Query: 256 DYID-IATKRIASV 268
           DYI+ I  +R+  V
Sbjct: 537 DYIETITKERLKKV 550



 Score = 63.9 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 70/184 (38%), Gaps = 23/184 (12%)

Query: 9   INENQNSIFEWKDKIIKGNSISVL---EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV 65
           I   Q  +    + +IKGN++ VL   +KL A  + LI+ DPPYN   +   Y       
Sbjct: 154 IKNLQEYLKNNPNLLIKGNNLLVLHSLKKLYANKIKLIYIDPPYNTGNDSFGY------- 206

Query: 66  DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NF 123
                  DKF     +  F +  L   +  L+ +G ++V    +    +  ++  +    
Sbjct: 207 ------NDKFKH-STWLTFMKNRLEIAKEFLRDDGVIFVQCDDNEQAYLKVLMDEIFGRD 259

Query: 124 WILNDIVWRKSNPMPNFRG----RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
             +N I  +  N      G    R  +N    LI+     K + +   YD+ +  +    
Sbjct: 260 NFVNSIAVKLKNIAGASGGGEDKRFKKNIEYILIYGKSYEKLEQFKSVYDSRELYSHISF 319

Query: 180 MRSD 183
            + +
Sbjct: 320 CKEN 323


>gi|38234465|ref|NP_940232.1| putative DNA methylase [Corynebacterium diphtheriae NCTC 13129]
 gi|38200728|emb|CAE50429.1| Putative DNA methylase [Corynebacterium diphtheriae]
          Length = 613

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 9/94 (9%)

Query: 184 WLIPICSGSERLRNKDG-EKLHP-------TQKPEALLSRILVSSTKPGDIILDPFFGSG 235
           W     +G  +   +D   K+ P       T KPE LL RI+   + PGDI+LD F GSG
Sbjct: 315 WWNADEAGHNQEAKRDHLNKMFPEVENPFSTPKPERLLERIIHIGSNPGDIVLDVFAGSG 374

Query: 236 TSGAVAKKLRRSFIGIE-MKQDYIDIATKRIASV 268
           T+ AVA+K+ R ++  E ++  +      R+  V
Sbjct: 375 TTAAVAQKMGRRWVTCELLESTFTTFTRPRLEKV 408



 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 88/279 (31%), Gaps = 36/279 (12%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKG---NSISVLEKLPA------KSVDLIFADPPYNLQ 52
            + +    +E  +   +  + +I G   + +  L ++P         V L++ DPP+N  
Sbjct: 54  PKSDEFECSERADLQPQDDNLLILGESGDVLEALTRVPELAEKYVGKVKLVYIDPPFNTA 113

Query: 53  LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
                             S++       +    R  L+  +++L  +G++WV      + 
Sbjct: 114 --------------QTFASYEDNLEHSIWLTMMRDRLIHMKKLLTNDGSIWVHLDDVEVH 159

Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
           R+  ++  +                          AH+ ++  +PS +      N     
Sbjct: 160 RMRVLMDEVFGADRFIATVAWEKDKGRRNDTDISGAHDLILIYAPSGRQWKNVRNLLPRL 219

Query: 173 AAN--EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
           A+         +D   P   G         EK    + P  L S  +V+           
Sbjct: 220 ASQDARYQNPDNDPRGPWLQGDNGTAKSGTEKN---RFPVTLPSGRVVTPKGRYWR---- 272

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           F   G   A A+   R + G     D + +  + +  VQ
Sbjct: 273 FSPEG--LAEARADGRVWFG--KDGDSLPVIKRYLTDVQ 307


>gi|218439657|ref|YP_002377986.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
 gi|218172385|gb|ACK71118.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
          Length = 438

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 1/108 (0%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +PT+K   +L RI+ +S+   D++LD F GSGT+ AVA++L R +I I+     I     
Sbjct: 311 YPTEKNSEMLRRIISASSNAEDLVLDAFAGSGTTVAVAEELGRQWIAIDNSLLAIKTMIH 370

Query: 264 RIA-SVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQG 310
           R+A   + +G+   +  T  + E  +  N ++  GL   G+I    + 
Sbjct: 371 RLAMGTEVMGDFVKSNETKFKQECLININRVLHSGLDLYGEIAPELEN 418



 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 64/171 (37%), Gaps = 15/171 (8%)

Query: 20  KDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           K+K+I G+++ VL  L         V LI+ DPPY    + +  + +H+  D +  +   
Sbjct: 55  KNKLIYGDNLRVLRTLLNDVNIAGKVGLIYIDPPYATGASFESRQQNHAYYDLMEGA--- 111

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWR 132
                 Y  F R  L+  R +L   G+++V       F I  ++  +       N I  +
Sbjct: 112 -----EYIEFLRQRLILLRELLSDEGSIYVHLDEKMAFPIKIIMDEIFGSKNFRNWITRK 166

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
           K NP    R +    +   L +           F       A ++ Q   +
Sbjct: 167 KCNPKNYTRRQYGNISDYILFYTKTDNYIWNQPFESWTEVTAKKEYQYIEE 217


>gi|22091186|ref|NP_666000.1| M.PhiCh1-III [Natrialba phage PhiCh1]
 gi|22003507|gb|AAM88756.1|AF440695_82 putative N4-cytosine methyltransferase [Natrialba phage PhiCh1]
          Length = 448

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 77/278 (27%), Gaps = 83/278 (29%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           I EW   I +G++  VL +LP  SV  +   PPY    +             V       
Sbjct: 2   ISEWTGDIHEGDAEEVLAELPESSVHCVVTSPPYFGHRDY-----------GVDGQIGLE 50

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLW-----------------------------VIG 106
            S + +           RRVL+ +G+ W                               G
Sbjct: 51  DSLDEFIESLVDVASEIRRVLRDDGSWWLNLGDSFAGSGGAGGQWGQNEHGSATRLADAG 110

Query: 107 SYHN----------------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
             +N                  R+   L+N  + I  D VW K N MP+    R     E
Sbjct: 111 DAYNGPLNTSNIRRKSKMLVPHRVAIALENAGWIIRADAVWTKPNGMPSSAHDRLNEKKE 170

Query: 151 TLIWASPSPKAKGYTFNYDALKAA----------NEDVQMRSDWLIPICSGSERLRNKDG 200
            +    P P    Y FN DA++              D   R            R  + +G
Sbjct: 171 FVFHLVPEP---HYWFNLDAIREPHSEASLERAGRHDQAKRGYPSNDHSLEPSRFCHPNG 227

Query: 201 EK--------------LHPTQKPEALLSRILVSSTKPG 224
           +                H    PE L    + SS    
Sbjct: 228 KNPGDIFEINAAQFSDAHFAVFPEELCKDPIKSSCPEK 265



 Score = 70.8 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 30/43 (69%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
             I+LDPF G+GT+  VAK+  R FIG+++  +++ +A +RI 
Sbjct: 379 PGIVLDPFAGAGTTCLVAKRFGRRFIGVDLNPEFVAMAQQRIG 421


>gi|317013169|gb|ADU83777.1| type III restriction-modification system: methyltransferase
           [Helicobacter pylori Lithuania75]
          Length = 646

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 3/90 (3%)

Query: 181 RSDWLIPICSGSERLRNKDGEKLH-PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
           R DW          +  + G+ L    +KPE L+  IL  ST+  D++LD F GSGT+ A
Sbjct: 438 RGDWWAGYYKDMGNVNKQGGDILFKNGKKPERLIKDILEISTQENDLVLDFFAGSGTTCA 497

Query: 240 VAKKLRRSFIGIEMKQDYID-IATKRIASV 268
           VA K++R +IGIE + DYI+ I  +R+  V
Sbjct: 498 VAHKMKRRYIGIE-QMDYIETITKERLKKV 526



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 60/173 (34%), Gaps = 23/173 (13%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            + +IKGN++  L  L    AK V  I+ DPPYN   +   Y              D F 
Sbjct: 165 TNYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNY-------------NDNF- 210

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN------FWILNDIV 130
           +  ++  F +  L A R  L  +G ++V    +    +  ++  +         +  +I 
Sbjct: 211 NHSSWLVFMKNRLEAAREFLSDDGVIFVQCDDNEQAYLKVLMDEIFLRENFVVCLHVEIS 270

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
             +   +   +        E ++  +   +   +       K  +E   +  D
Sbjct: 271 TTQGMKVGFAKKGNIVKNAEYILIYARDIENFSFIRPLYVSKNYDEHYSIYLD 323


>gi|325926088|ref|ZP_08187449.1| DNA modification methylase [Xanthomonas perforans 91-118]
 gi|325927475|ref|ZP_08188718.1| DNA modification methylase [Xanthomonas perforans 91-118]
 gi|325542154|gb|EGD13653.1| DNA modification methylase [Xanthomonas perforans 91-118]
 gi|325543433|gb|EGD14855.1| DNA modification methylase [Xanthomonas perforans 91-118]
          Length = 99

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 13/102 (12%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL---------NGQLYRPDHSLVDAVTD 70
           K+++++G+++++L  L A S D +  DPPY                 Y  D    D V D
Sbjct: 2   KNQLLQGDALTILPTLEANSFDALITDPPYASGGLTAAARARPPSTKYCRDGGHADFVGD 61

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
             D+ S    +  +   WL  C RVLK    + +   +  + 
Sbjct: 62  ERDQRS----HLKWMHLWLSECARVLKDGAPVLLFTDWRQLP 99


>gi|289594298|ref|YP_003482305.1| DNA methylase N-4/N-6 domain protein [Natrialba magadii ATCC 43099]
 gi|289533395|gb|ADD07743.1| DNA methylase N-4/N-6 domain protein [Natrialba magadii ATCC 43099]
          Length = 459

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 77/278 (27%), Gaps = 83/278 (29%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           I EW   I +G++  VL +LP  SV  +   PPY    +             V       
Sbjct: 13  ISEWTGDIHEGDAEEVLAELPESSVHCVVTSPPYFGHRDY-----------GVDGQIGLE 61

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLW-----------------------------VIG 106
            S + +           RRVL+ +G+ W                               G
Sbjct: 62  DSLDEFIESLVDVASEIRRVLRDDGSWWLNLGDSFAGSGGAGGQWGQNEHGSATRLADAG 121

Query: 107 SYHN----------------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
             +N                  R+   L+N  + I  D VW K N MP+    R     E
Sbjct: 122 DAYNGPLNTSNIRRKSKMLVPHRVAIALENAGWIIRADAVWTKPNGMPSSAHDRLNEKKE 181

Query: 151 TLIWASPSPKAKGYTFNYDALKAA----------NEDVQMRSDWLIPICSGSERLRNKDG 200
            +    P P    Y FN DA++              D   R            R  + +G
Sbjct: 182 FVFHLVPEP---HYWFNLDAIREPHSEASLERAGRHDQAKRGYPSNDHSLEPSRFCHPNG 238

Query: 201 EK--------------LHPTQKPEALLSRILVSSTKPG 224
           +                H    PE L    + SS    
Sbjct: 239 KNPGDIFEINAAQFSDAHFAVFPEELCKDPIKSSCPEK 276



 Score = 70.8 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 30/43 (69%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
             I+LDPF G+GT+  VAK+  R FIG+++  +++ +A +RI 
Sbjct: 390 PGIVLDPFAGAGTTCLVAKRFGRRFIGVDLNPEFVAMAQQRIG 432


>gi|159899439|ref|YP_001545686.1| DNA methylase N-4/N-6 domain-containing protein [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159892478|gb|ABX05558.1| DNA methylase N-4/N-6 domain protein [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 309

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 5/82 (6%)

Query: 184 WLIPICSGSERLRN-----KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
           W  PI + +   R          K HP+ KP ALLS I+   TKP   +LDPF G G + 
Sbjct: 51  WSAPILASAYPTRGPASAAHHIRKAHPSPKPPALLSEIIRFFTKPNGWVLDPFAGVGGTL 110

Query: 239 AVAKKLRRSFIGIEMKQDYIDI 260
               + +R  IGIE+   YID+
Sbjct: 111 LACAQTQRQAIGIELSPHYIDL 132



 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 49/149 (32%), Gaps = 17/149 (11%)

Query: 23  IIKGNSISVL--EKLPAKSVDLIFADPPYNL----QLNGQLYRPDHSLVDAVTDSWDKFS 76
           +++G++  VL    +  +  DL+  DPPY+        GQ  +  +      TD      
Sbjct: 147 VLQGDAREVLNSPSIQQQRFDLVLTDPPYSSMLSRARTGQRRKQGNGAATPFTDDPADLG 206

Query: 77  SFEAYDAFTRA---WLLACRRVLKPNGTLWVI-GSYHNIFRIGTMLQNLNFWILNDIVWR 132
           + + Y  F R     +    + L+  G L +             ML        + +   
Sbjct: 207 NVD-YPTFLRELTSIVAQTLQSLRVGGHLVLFVKDLQPTPEHHNMLH------ADIVSAL 259

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKA 161
                  +RG R       +++    P +
Sbjct: 260 YQLSQLRYRGYRIWYDQSAMLYPFGYPYS 288


>gi|104779992|ref|YP_606490.1| adenine specific DNA methylase [Pseudomonas entomophila L48]
 gi|95108979|emb|CAK13675.1| putative Adenine specific DNA methylase [Pseudomonas entomophila
           L48]
          Length = 505

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 48/90 (53%)

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
               + +       + +    G++   T KPEAL+ RIL  +T PGD++LD F GSGT+ 
Sbjct: 275 FWPYEEVGHTQDAKKEVVAIFGDENFATPKPEALMKRILEVATNPGDLVLDSFLGSGTTI 334

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           AVA K+ R +IGIE+          R+A V
Sbjct: 335 AVAHKMGRQWIGIEVGAHAESHCQPRLARV 364



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 63/196 (32%), Gaps = 18/196 (9%)

Query: 18  EWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           +  + +I+G+++  L+ L       V  +F DPPYN +              +  + +D 
Sbjct: 36  DSPNMLIQGDNLDALKALLPYYAGQVKCVFIDPPYNTK--------------SAFEQYDD 81

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
                 + +     L   R +L P+G+LWV    +       +   +             
Sbjct: 82  NLEHSQWLSMMYPRLELIRELLAPDGSLWVTLDDNEAHYFKVICDEIFGRPNFIASVIWQ 141

Query: 135 NP-MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
               P    R F   H+ +   + + +           K         +D   P  +G  
Sbjct: 142 KIYSPKNSARHFSVDHDYIFVYAKNAEKWVPNPMPRTEKQDKAYRNPDNDPRGPWKAGDL 201

Query: 194 RLRNKDGEKLHPTQKP 209
             RN  G  ++P   P
Sbjct: 202 SARNYYGAGVYPITTP 217


>gi|312171443|emb|CBX79701.1| DNA methylase N-4/N-6 domain-containing protein [Erwinia amylovora
           ATCC BAA-2158]
          Length = 506

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/90 (35%), Positives = 44/90 (48%)

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
               D +       +         +  T KPE L+ RIL  ++ PGD+ILD F GSGT+ 
Sbjct: 273 FWPYDEVGHTQEAKKEAVALFSSDVFSTPKPERLIQRILHIASNPGDLILDSFLGSGTTA 332

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           AVA K+ R +IGIEM +        R+  V
Sbjct: 333 AVAHKMNRRYIGIEMGEHARTHCIPRLQKV 362



 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 56/167 (33%), Gaps = 20/167 (11%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + I++G+++  L  L       V  IF DPPYN Q              +  + +D    
Sbjct: 37  NMIVQGDNLLALRALMPLYAGQVKCIFIDPPYNTQ--------------SAFEHYDDKLE 82

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNP 136
              + +     L+  R +L  +G++WV    +    +  M+  +            +   
Sbjct: 83  HSQWLSMMYPRLVLLRDLLAEDGSIWVTLDDNEAHYMKVMMDEVFGRENFIANSLWQKVF 142

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
                 +     H+ ++      +A G+  N     A  + +    D
Sbjct: 143 ATKNSAKHLSVDHDHILIYGK--QANGWVPNLMPRTAKQDSIYKNPD 187


>gi|317014777|gb|ADU82213.1| adenine-specific DNA-methyltransferase [Helicobacter pylori
           Gambia94/24]
          Length = 655

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/84 (44%), Positives = 52/84 (61%), Gaps = 2/84 (2%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           I      + + N+    L   +KPEALL RIL  ST+  D++LD F GSGT+ AVA K++
Sbjct: 453 IFTEDFWQGISNEGQITLKNGKKPEALLQRILEISTQENDLVLDFFAGSGTTCAVAHKMK 512

Query: 246 RSFIGIEMKQDYID-IATKRIASV 268
           R +IGIE + DYI+ I  +R+  V
Sbjct: 513 RRYIGIE-QMDYIETITKERLKKV 535



 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 75/219 (34%), Gaps = 24/219 (10%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVD---LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
            E  + +IKGN++  L  L  K       I+ DPPYN   +   Y              D
Sbjct: 162 DENTNYLIKGNNLIALHSLKKKFAKKVKCIYIDPPYNTGNDSFNY-------------ND 208

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN--LNFWILNDIVW 131
            F +  ++  F +  L A R  L  +G ++V    +    +  ++    L    +  I  
Sbjct: 209 NF-NHSSWLVFMKNRLEAAREFLSDDGVIFVQCDDNEQAYLKVLMDEIFLRENFVATITC 267

Query: 132 RKSNPMPNFRGR-RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           +  +            N  E ++  + S ++  Y     + +  N   +    +   I +
Sbjct: 268 KVKSAGGLTTDTEMIFNCSEYILIYAKSFESLTYNSIKISKEIINSQSKTSEQYNSIINN 327

Query: 191 ----GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
                 E +  KD  K +   K    + R+ V +    D
Sbjct: 328 IDYKKKEFICEKDNIKYYKIPKGNFNIQRLSVKTMSEQD 366


>gi|317178104|dbj|BAJ55893.1| putative type III restriction enzyme M protein [Helicobacter pylori
           F16]
          Length = 657

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/84 (44%), Positives = 53/84 (63%), Gaps = 2/84 (2%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           I      + + N+    L   +KPEAL+SRIL  ST+  D++LD F GSGT+ AVA K++
Sbjct: 455 IFTEDFWQGISNEGQITLKNGKKPEALISRILEISTQENDLVLDFFAGSGTTCAVAHKMK 514

Query: 246 RSFIGIEMKQDYID-IATKRIASV 268
           R +IGIE + DYI+ I  +R+  V
Sbjct: 515 RRYIGIE-QMDYIETITKERLKKV 537



 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 17/105 (16%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            + +IKGN++  L  L    AK V  I+ DPPYN   +   Y              D F 
Sbjct: 167 TNYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNY-------------NDNF- 212

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
           +  ++  F +  L   R  L  +G ++V    +    +  ++  +
Sbjct: 213 NHSSWLVFMKNRLEIAREFLSDDGVIFVQCDDNEQAYLKVLMDEI 257


>gi|300772254|ref|ZP_07082124.1| DNA (cytosine-5-)-methyltransferase [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300760557|gb|EFK57383.1| DNA (cytosine-5-)-methyltransferase [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 216

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 75/245 (30%), Gaps = 46/245 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            I   +++ ++ + P K  DL   DPPY +        PD        D +      E+ 
Sbjct: 9   TITNEDNMVMMSRYPEKYFDLAIVDPPYGIG-------PDWKKRKNTADKYKGSYQNESI 61

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                 +     RV K                             N IVW  +     F 
Sbjct: 62  PD--EKYFNELIRVSK-----------------------------NWIVWGWNYYTQFF- 89

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
                  +  ++W         ++   +    + +              G+ +      +
Sbjct: 90  ----PPTNYLIVWDKKMSDKTSFSSQVEIAATSIKIPAAIYRHS---WDGARKESETGID 142

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K+HP QKP AL   +L    KPG  I+D  FGSG+               E+ Q+Y   A
Sbjct: 143 KIHPHQKPVALYKWLLDKYAKPGYKIIDTHFGSGSIAIACHDYGYELTACELDQEYYQSA 202

Query: 262 TKRIA 266
             RI 
Sbjct: 203 IDRIR 207


>gi|289675319|ref|ZP_06496209.1| DNA methylase N-4/N-6 [Pseudomonas syringae pv. syringae FF5]
          Length = 127

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 39/81 (48%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           ++ H    P  L+   +++    G ++LDPF G+GT+  V+ +  R  I  E+  +Y  +
Sbjct: 42  KEAHFATFPPDLIRPCILAGAPRGGVVLDPFGGAGTTSLVSMQEGRRSIICELNPEYAAL 101

Query: 261 ATKRIASVQPLGNIELTVLTG 281
           A  RI +    G  ++ V   
Sbjct: 102 ARARIDAAWLDGAAQMDVFRD 122


>gi|220930422|ref|YP_002507331.1| DNA methylase N-4/N-6 domain protein [Clostridium cellulolyticum
           H10]
 gi|220000750|gb|ACL77351.1| DNA methylase N-4/N-6 domain protein [Clostridium cellulolyticum
           H10]
          Length = 325

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/304 (16%), Positives = 89/304 (29%), Gaps = 57/304 (18%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF--EAY 81
             G+ I VL+ +P  S+      PP+           D     +  + +  F     E Y
Sbjct: 16  YHGDCIEVLKGIPDNSIHYSVFSPPFASLYTYSNSERDMGNCRSEDEFYLNFEFLVAELY 75

Query: 82  DAFTRAWLLACRRVLKP-----NGTL------------WVIGSYHNIFRIGTMLQ----- 119
                  LL+   +  P     +G +            +  G +    ++          
Sbjct: 76  RVLMPGRLLSFHCMDIPAMKERDGYIGLKDFPGDLIKIFQSGDFIYHSKVVIWKDPLVEA 135

Query: 120 -------------NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI------------- 153
                          +  +    +      M          AH                 
Sbjct: 136 TRTKALGLLHKQIQKDSSLCRQGLPDYLVTMRKPGKNPELIAHPEGFTSFVGENEPDAPK 195

Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC-------SGSERLRNKDGEKLHPT 206
              P P A  Y  +    K      Q+   +  P+        + + +    D ++ H  
Sbjct: 196 IERPVPDADAYAKHEAYNKDPVYSHQVWRRYASPVWMDIKQSNTLNRKPARDDRDERHIC 255

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
                ++ R L   T P DI+L PF G G+    A ++ R  +GIE+K+ Y   A     
Sbjct: 256 PLQLDVIERALQLWTNPNDIVLSPFAGIGSEVYKAVQMGRRAVGIELKESYYTQAVINCR 315

Query: 267 SVQP 270
           S++P
Sbjct: 316 SLEP 319


>gi|118593983|ref|ZP_01551335.1| DNA methylase N-4/N-6 [Stappia aggregata IAM 12614]
 gi|118433433|gb|EAV40108.1| DNA methylase N-4/N-6 [Stappia aggregata IAM 12614]
          Length = 264

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 44/78 (56%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           S   R   + G   HP + P AL    +   T PGD++LDPF GS  +G V+++L R++I
Sbjct: 112 SSYMRYCKEKGITAHPARFPAALPEYFIRMVTDPGDVVLDPFGGSCITGEVSERLERNWI 171

Query: 250 GIEMKQDYIDIATKRIAS 267
             E+++ Y++ A  R  +
Sbjct: 172 CAELREGYLEGARGRFEN 189


>gi|218441078|ref|YP_002379407.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
 gi|218173806|gb|ACK72539.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
          Length = 379

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 65/171 (38%), Gaps = 30/171 (17%)

Query: 12  NQNSIFEWKD---------KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
           ++N   E+K+           I GN++ VL++ P++S+D     PPY  +   Q      
Sbjct: 30  DKNFSDEFKNYFSHPNTTPLFILGNAVEVLKQFPSESIDCCMTSPPYWGKREYQSGGIGL 89

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW-VIGSYHNI-------FRI 114
                         +F  Y        L  +R+LK  G+ W  +G  +         +RI
Sbjct: 90  E------------KNFHDYIKNLCLVFLEIKRILKNEGSFWLNLGDSYEQKHLLGLPWRI 137

Query: 115 GTML-QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
             +L  +  + + N I+W K     +    R +N HE +      PK   Y
Sbjct: 138 ALLLTDDQGWILRNSIIWNKVKGGLDNSKDRLRNIHENVFHFVKQPKDYYY 188



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 11/122 (9%)

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R   +  E++   +   K KG+ F     K A         W I          +    K
Sbjct: 264 RTTHSNSESVSGRAKELKEKGFYFLKYHPKGAKPGD----VWEI-------LPEDSQNRK 312

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +H    P  L    + ++  P  I+LDPF G GT+  VA  L+R  IGI++ + Y+++A 
Sbjct: 313 IHFAPYPLDLCKIPISATCPPNGIVLDPFAGIGTTMVVAHLLKRKSIGIDICRHYLELAQ 372

Query: 263 KR 264
           KR
Sbjct: 373 KR 374


>gi|292898582|ref|YP_003537951.1| DNA methylase [Erwinia amylovora ATCC 49946]
 gi|291198430|emb|CBJ45538.1| putative DNA methylase [Erwinia amylovora ATCC 49946]
          Length = 506

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/90 (35%), Positives = 44/90 (48%)

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
               D +       +         +  T KPE L+ RIL  ++ PGD+ILD F GSGT+ 
Sbjct: 273 FWPYDEVGHTQEAKKEAVALFSSDVFSTPKPERLIQRILHIASNPGDLILDSFLGSGTTA 332

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           AVA K+ R +IGIEM +        R+  V
Sbjct: 333 AVAHKMNRRYIGIEMGEHARTHCIPRLQKV 362



 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 56/167 (33%), Gaps = 20/167 (11%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + II+G+++  L  L       V  IF DPPYN Q              +  + +D    
Sbjct: 37  NMIIQGDNLLALRALMPLYAGQVKCIFIDPPYNTQ--------------SAFEHYDDKLE 82

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNP 136
              + +     L+  R +L  +G++WV    +    +  M+  +            +   
Sbjct: 83  HSQWLSMMYPRLVLLRDLLAEDGSIWVTIDDNEAHYMKVMMDEVFGRENFIANSLWQKVF 142

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
                 +     H+ ++      +A G+  N     A  + +    D
Sbjct: 143 ATKNSAKHLSVDHDHILIYGK--QANGWVPNLMPRTAKQDSIYKNPD 187


>gi|217032405|ref|ZP_03437899.1| hypothetical protein HPB128_164g5 [Helicobacter pylori B128]
 gi|298737043|ref|YP_003729573.1| adenine-specific DNA-methyltransferase [Helicobacter pylori B8]
 gi|216945884|gb|EEC24502.1| hypothetical protein HPB128_164g5 [Helicobacter pylori B128]
 gi|298356237|emb|CBI67109.1| adenine-specific DNA-methyltransferase [Helicobacter pylori B8]
          Length = 655

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 2/84 (2%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           I      + + N+    L   +KPE L+ RIL  +T   D++LD F GSGT+ AVA K++
Sbjct: 453 IFTEDFWQGISNEGQITLKNGKKPEQLIYRILEIATNENDLVLDFFAGSGTTCAVAHKMK 512

Query: 246 RSFIGIEMKQDYID-IATKRIASV 268
           R +IGIE + DYI+ I  +R+  V
Sbjct: 513 RRYIGIE-QMDYIETITKERLKKV 535



 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 17/105 (16%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            + +IKGN++  L  L    AK V  I+ DPPYN   +   Y              D F 
Sbjct: 165 TNYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNY-------------NDNF- 210

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
           +  ++  F +  L A R  L  +G ++V    +    +  ++  +
Sbjct: 211 NHSSWLVFMKNRLEAAREFLSDDGVIFVQCDDNEQAYLKVLMDEI 255


>gi|293392005|ref|ZP_06636339.1| putative type III DNA modification methylase [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952539|gb|EFE02658.1| putative type III DNA modification methylase [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 573

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 5/144 (3%)

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
           ++          + R ++   +  IW     K K  T      +  ++ V  +S W    
Sbjct: 238 VLPPDGRAWAYSKERFWELIKDNRIWFGKDGKNKP-TVKRFLSEVGDKGVVPKSVWDYTE 296

Query: 189 C----SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
                +  + +   +      T KPE  + RIL  +T PGD++LD F GSGT+GAVA K+
Sbjct: 297 VGENRNARQEVMKFNSIDPFSTPKPERFIERILTIATNPGDLVLDSFAGSGTTGAVAHKM 356

Query: 245 RRSFIGIEMKQDYIDIATKRIASV 268
            R +I +E+ +        R+  V
Sbjct: 357 GRRWIMVELGEHCHTHIIPRLQKV 380



 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 70/211 (33%), Gaps = 22/211 (10%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLY 58
           ++K+      ++N +F+  +++I G+++  L+ L    A  V  +F DPPYN        
Sbjct: 28  AEKSYHVKVRSENDVFD--NRLIFGDNLLALKALEQEFAGKVKCVFIDPPYNTG------ 79

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
                   +    +D       +    R  L   +R+L  +G+LW+    +    +  + 
Sbjct: 80  --------SAFTHYDDGLEHSIWLGLMRDRLEIIKRLLSDDGSLWITIDDNEAHYLKVLC 131

Query: 119 QNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
             +                 P    +   + H+ +   + + +   +  N  +       
Sbjct: 132 DEVFGRRNFVVNAIWVKKSAPQNDAKWISDTHDHVFVYAKNKEI--WKINKLSRTEKQNS 189

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
           +   SD    +    E          + T K
Sbjct: 190 IYKNSDDFDGVNESGEWYGRGPWYADNITVK 220


>gi|225849113|ref|YP_002729277.1| modification methylase, type III R/M system [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643411|gb|ACN98461.1| modification methylase, type III R/M system [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 581

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 83/226 (36%), Gaps = 29/226 (12%)

Query: 49  YNLQLNGQLYRPDHSLVDAVTDSW-DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
           Y ++    +++    L+D   + W    +S  A        ++  +++  P G  W    
Sbjct: 188 YFVKSENFVFKGYRKLLDKPKEPWWHDMTSMTAGRKGGEPRIIFGKKLYPPPGRAWTF-- 245

Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
             +  RI  M +     I   +           +  +     E +               
Sbjct: 246 --SQERIEEMEKEGRIRIRCSVCGYTHYKGIWKKCPKCGEEKERV--------------- 288

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
                    D  + +D   PI +    +          T+  E LL R++ S++  GD+I
Sbjct: 289 ---------DYLVITDGREPIDNDWTDIPGYSFGWDFQTENSEILLKRVIESTSNEGDLI 339

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           LD F GSGT+ AVA KL+R +IG+EM + +  +   R+  V     
Sbjct: 340 LDFFLGSGTTIAVAHKLKRKWIGVEMGEHFWTVVLPRMKKVLAYDK 385



 Score = 43.1 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 57/171 (33%), Gaps = 18/171 (10%)

Query: 37  AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
              V  I+ DPP+N     +    D+       D+         + +     L   R +L
Sbjct: 83  GNRVQTIYIDPPFN-----KEQDADYLYNVKYKDA--------TWISMLENRLSLARELL 129

Query: 97  KPNGTLWVIGSYHNIFRIGTMLQNLNFW--ILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
              G+++V   Y+    +  +L  +  W    N+I+  +      F   RF  A ++L +
Sbjct: 130 NEKGSIFVRCDYNGNMYVRMLLNEIFGWENFRNEIIVNRIVKKG-FGADRFPTAIDSLFY 188

Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
              S       +     K         +        G  R+    G+KL+P
Sbjct: 189 FVKSENFVFKGYRKLLDKPKEPWWHDMTSMTAGRKGGEPRII--FGKKLYP 237


>gi|292487337|ref|YP_003530209.1| type III restriction-modification system StyLTI enzyme mod [Erwinia
           amylovora CFBP1430]
 gi|291552756|emb|CBA19801.1| Type III restriction-modification system StyLTI enzyme mod [Erwinia
           amylovora CFBP1430]
          Length = 488

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/90 (35%), Positives = 44/90 (48%)

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
               D +       +         +  T KPE L+ RIL  ++ PGD+ILD F GSGT+ 
Sbjct: 255 FWPYDEVGHTQEAKKEAVALFSSDVFSTPKPERLIQRILHIASNPGDLILDSFLGSGTTA 314

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           AVA K+ R +IGIEM +        R+  V
Sbjct: 315 AVAHKMNRRYIGIEMGEHARTHCIPRLQKV 344



 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 56/167 (33%), Gaps = 20/167 (11%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + II+G+++  L  L       V  IF DPPYN Q              +  + +D    
Sbjct: 19  NMIIQGDNLLALRALMPLYAGQVKCIFIDPPYNTQ--------------SAFEHYDDKLE 64

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNP 136
              + +     L+  R +L  +G++WV    +    +  M+  +            +   
Sbjct: 65  HSQWLSMMYPRLVLLRDLLAEDGSIWVTIDDNEAHYMKVMMDEVFGRENFIANSLWQKVF 124

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
                 +     H+ ++      +A G+  N     A  + +    D
Sbjct: 125 ATKNSAKHLSVDHDHILIYGK--QANGWVPNLMPRTAKQDSIYKNPD 169


>gi|240128406|ref|ZP_04741067.1| putative type III restriction/modification system modification
           methylase [Neisseria gonorrhoeae SK-93-1035]
          Length = 212

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/75 (42%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           ++N  GEK     KPE L+   +  +T   DI+LD   GSGT+ AVA K+ R +IGIE +
Sbjct: 1   MKNLFGEKAFKNPKPEELIQDFITITTNENDIVLDYHLGSGTTAAVAHKMNRQYIGIE-Q 59

Query: 255 QDYID-IATKRIASV 268
            DYI+ +A +R+  V
Sbjct: 60  MDYIETLAVERMKKV 74


>gi|187732924|ref|YP_001880706.1| DNA methylase [Shigella boydii CDC 3083-94]
 gi|187429916|gb|ACD09190.1| DNA methylase [Shigella boydii CDC 3083-94]
          Length = 391

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 17/127 (13%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAYDAF 84
            + +  +  LP  SVDLI  DPPY                    + WD ++   + Y  +
Sbjct: 54  ADCLEFIWSLPENSVDLIVTDPPYF---------------KVKPEGWDNQWKGDDDYLKW 98

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
               L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N   + 
Sbjct: 99  LDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAKPSGRWNGCNKE 157

Query: 145 FQNAHET 151
              A+  
Sbjct: 158 SLRAYFP 164



 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ + ++PGD+I D F GSG++   A  L 
Sbjct: 304 VPYTDVWTHKPVQFYPGKHPCEKPAEMLQQIISAGSRPGDLIADFFMGSGSTVKAALALG 363

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  IG+E++ +  +   + +  +
Sbjct: 364 RRAIGVELETERFEQTVREVQDL 386


>gi|313813484|gb|EFS51198.1| DNA (cytosine-5-)-methyltransferase [Propionibacterium acnes
           HL025PA1]
          Length = 617

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                +         E L    G++   T KPE LL R++   + PGDI+LD F GSGT+
Sbjct: 321 WWPHEEVGHSQEGKKEILSLFPGQQPFSTPKPERLLERVITIGSNPGDIVLDVFAGSGTT 380

Query: 238 GAVAKKLRRSFIGIE-MKQDYIDIATKRIASV 268
            AVA+K+ R ++  E ++  +      R+  V
Sbjct: 381 AAVAQKMGRRWVTCELLESTFTTFTRPRLEKV 412



 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 56/164 (34%), Gaps = 23/164 (14%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKG---NSISVLEKLPA------KSVDLIFADPPYNLQ 52
            + +  A +E  +   +  + +I G   + +  L ++P         V LI+ DPP+N  
Sbjct: 55  PKSDEFAYSERADLEPQDDNLLILGESGDVLEALTRVPELAEKYVGKVKLIYIDPPFNTA 114

Query: 53  LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
                             S++       +    R  L   +++L  +G++WV      + 
Sbjct: 115 --------------QTFASYEDNLEHSIWLTMMRDRLHHMKKLLADDGSIWVHLDDVEVH 160

Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
           R+  ++  +          +              ++++T++   
Sbjct: 161 RMRVLMDEVFGADRFVAEMQWQKTYSPENRSVISHSNDTILVYC 204


>gi|300825607|ref|ZP_07105655.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 119-7]
 gi|300521952|gb|EFK43021.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 119-7]
          Length = 195

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 17/131 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  ++ L   SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINTDCLEFIQTLSENSVDLIVTDPPYF---------------KVKPEGWDNQWKGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHET 151
             +    A+  
Sbjct: 115 CNKESLRAYFP 125


>gi|325107567|ref|YP_004268635.1| DNA methylase N-4/N-6 domain protein [Planctomyces brasiliensis DSM
           5305]
 gi|324967835|gb|ADY58613.1| DNA methylase N-4/N-6 domain protein [Planctomyces brasiliensis DSM
           5305]
          Length = 427

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/266 (17%), Positives = 91/266 (34%), Gaps = 59/266 (22%)

Query: 22  KIIKGN--SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           ++   +   +  + ++   SVD+I  D PY+                  T  +D   +F 
Sbjct: 217 RLYHSDFRDLEQVARIEPGSVDIILTDVPYD---------------RKFTTQFDDLGAF- 260

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN--LNFWILNDIVWRKSNPM 137
                         RVLK  G   V   Y  + ++   +++   +               
Sbjct: 261 ------------ASRVLKDGG---VFCVYLGVVQVADAIKSFTKHLEYRATAFSSWLGDG 305

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
           P  +  +       ++  S     +   +      +  E                     
Sbjct: 306 PVIQPLQCVTQSTPVLVFSKGKWTRTTRWYNSFHNSVAE--------------------- 344

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
              + LH  QKP   +   L+S + PGD+I DP  GSG++ AV ++  R F+G ++ +D 
Sbjct: 345 ---QDLHEWQKPLVDVEHWLLSFSDPGDLICDPCAGSGSTAAVCRRHDRCFVGGDIDRDA 401

Query: 258 IDIATKRIASVQPLGNIELTVLTGKR 283
           + +A  R+    P+ +  +  L   R
Sbjct: 402 VRLAQTRLKEETPVCDTPVLSLGRAR 427


>gi|326387306|ref|ZP_08208916.1| adenine specific DNA methylase [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208487|gb|EGD59294.1| adenine specific DNA methylase [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 562

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/174 (25%), Positives = 70/174 (40%), Gaps = 13/174 (7%)

Query: 106 GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN-----AHETLIWASPSPK 160
           G++          +  +++ L +   R   P      RR          E  I+      
Sbjct: 200 GAWLGTPLTRAEFRERDYYALTNDAGRDVWPPKGSSWRRPPAELTKLQSEKRIYWGKDGD 259

Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD------GEKLHPTQKPEALLS 214
           A          +   +D  +   W     +GS R  + +      GEK   T KPE ++ 
Sbjct: 260 ADFPVEKKFLSEV--KDGVVPQTWWPYDFAGSTRNASAELKGIFEGEKSFDTPKPEKIVQ 317

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           R L  +T+PGDI+LD F GSGT+GAVA K+ R +I +E+          R+  V
Sbjct: 318 RALEVATRPGDIVLDSFAGSGTTGAVAHKMGRRWIMVEIGDHATTHIMPRLVKV 371



 Score = 66.2 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 54/165 (32%), Gaps = 18/165 (10%)

Query: 19  WKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + + +IKG+++  L+ L    A  V  IF DPPYN                +    +D  
Sbjct: 44  FDNMLIKGDNLLALKALEQDYAGKVKCIFIDPPYNTG--------------SAFTHYDDG 89

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKS 134
                + +  R  L   R +L  +G+LW+    +    +  +   +         +  +S
Sbjct: 90  VEHSIWLSLMRDRLEIIRNLLSDDGSLWITIDDNESHYLKILCDEIFGRENFVSNIVWQS 149

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
              P          H  ++    S   + Y       + AN    
Sbjct: 150 KDTPGNNASTIAQTHNMVLVFKKSAIWRPYLIPRSEKQVANYKNP 194


>gi|206576064|ref|YP_002237618.1| DNA methylase [Klebsiella pneumoniae 342]
 gi|206565122|gb|ACI06898.1| DNA methylase [Klebsiella pneumoniae 342]
          Length = 297

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 21/116 (18%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D +  G+ + VL  +   S D I  DPPY ++  G+               WD       
Sbjct: 3   DILTHGDCLDVLRSMLGNSADSIVTDPPYGIKFMGKT--------------WD------- 41

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
           YD  ++A    C RVLKP G L          R+   +++  F I + IV+     
Sbjct: 42  YDVPSQAIWEECLRVLKPGGHLLSFAGSRTQHRMAARIEDAGFEIRDMIVFLYETS 97



 Score = 38.4 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
            C+ + R    +G   HP  KP  L+  +    T PG  +LDP  
Sbjct: 254 YCAKASRKDRGEGNN-HPCVKPTELMRYLCRLITPPGGTVLDPLC 297


>gi|317049517|ref|YP_004117165.1| DNA methylase N-4/N-6 domain-containing protein [Pantoea sp. At-9b]
 gi|316951134|gb|ADU70609.1| DNA methylase N-4/N-6 domain protein [Pantoea sp. At-9b]
          Length = 391

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 23/164 (14%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++ G+++ VL +LP+ S+D I   PPY  +        ++  +    D  D       + 
Sbjct: 62  LMCGDALDVLAQLPSDSIDFIMTSPPYWGKREY-----ENGGIGLEVDPMD-------FV 109

Query: 83  AFTRAWLLACRRVLKPNGTLW-VIGSYHN-------IFRIGTML-QNLNFWILNDIVWRK 133
                  L  +RVLKP G+ W  +G  +         +R+   L  N  + + N ++W K
Sbjct: 110 RNLAEICLQIKRVLKPTGSFWLNLGDTYKDKALLGLPWRVAFELTDNQGWILRNSVIWNK 169

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
                +    R  N HE +         KGY +N DA++    D
Sbjct: 170 LKGGMDNSADRLGNVHENIFHFVKKN--KGYYYNADAIRTKPRD 211



 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 60/153 (39%), Gaps = 13/153 (8%)

Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRG--RRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
             L  LN  + +    + S+     RG  R   +  E +   +   + KG+ F       
Sbjct: 247 NALSALNCMLDDISAGKFSDFRMVIRGQQRTTHSESEKVSGRAKELRDKGFYFLRYHP-- 304

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
             +  +    W I      +R       K H    P  L    ++++     I LDPF G
Sbjct: 305 --KGSKPADVWDILPEDTQKR-------KSHFAAYPLDLCRIPILATCPENGIALDPFSG 355

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           +G++   A +L R  +GI++ + Y+ + T+R  
Sbjct: 356 TGSTLIAAYELGRKSVGIDISERYLKLTTERFK 388


>gi|330824386|ref|YP_004387689.1| DNA methylase N-4/N-6 domain-containing protein [Alicycliphilus
           denitrificans K601]
 gi|329309758|gb|AEB84173.1| DNA methylase N-4/N-6 domain protein [Alicycliphilus denitrificans
           K601]
          Length = 568

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 66/157 (42%), Gaps = 10/157 (6%)

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHE-----TLIWASPSPKAKGYTFNYDALKAA 174
           NL + I+N     +  P      R  ++ H       L++     K+K            
Sbjct: 219 NLYYPIVNPNTGEQVFPPETLTWRYGKDTHAENEKKNLLYWGKDGKSK--VPRLKMFLEN 276

Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKL---HPTQKPEALLSRILVSSTKPGDIILDPF 231
            E V  R+ W       ++    +          T KPEALL RIL  ++K GDI+LD F
Sbjct: 277 AEPVVPRTIWPASEAGSTQSAMTEQKVLFATPFATPKPEALLQRILHIASKEGDIVLDSF 336

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            GSGT+G VA K+ R +I +E+ +        RI  V
Sbjct: 337 AGSGTTGVVAHKMGRRWIMVELGEHCQTHIIPRIKKV 373



 Score = 73.1 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 36/216 (16%)

Query: 19  WKDKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + +++I G+++  L+ L  +    V  +F DPPYN                +    +D  
Sbjct: 44  FDNRLIFGDNLLALKALENEFSGEVKCVFIDPPYNTG--------------SAFAQYDDG 89

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKS 134
                +    R  L   RR+L   G+LW+    +  F +  +   +         +    
Sbjct: 90  LEHSIWLGLMRDRLELIRRLLSDEGSLWITIDDNEAFYLKVLCDEVFGRSNFVSSIVWAK 149

Query: 135 NPMPNFRGRRFQNAHETLIWASP----SPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
              P    + F + H+ ++  +         +            N D   R  W     +
Sbjct: 150 RVSPANDAKYFSSDHDFVLVYAKNKPLWKPNRLPRTEGQNSYYKNPDNDSRGPWNSVTYT 209

Query: 191 GSERLRNKD-----------GEKLHPTQKPEALLSR 215
           G++    +            GE++ P   PE L  R
Sbjct: 210 GNKTREERPNLYYPIVNPNTGEQVFP---PETLTWR 242


>gi|209528419|ref|ZP_03276856.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
 gi|209491146|gb|EDZ91564.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
          Length = 375

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 12/158 (7%)

Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
           S +        L+ +   + + I+      +   + R   +  E +   +   K KG+ F
Sbjct: 225 SENEKHNAYQALEEILRQVSDGIISDFRMII-RGQQRTTHSDSEKVSGRAKELKEKGFYF 283

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
                    +  +    W I      +R       +LH    P  L    + S+  P  I
Sbjct: 284 LKYHP----KGSKPSDVWEILPEDAQKR-------ELHFAPYPVDLCKIPISSTCPPNGI 332

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           ILDPF G+GT+  VA+ L R   GI++   Y++IA +R
Sbjct: 333 ILDPFCGTGTTMLVAQLLGRKSCGIDLSPQYLEIAKER 370



 Score = 82.7 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 54/154 (35%), Gaps = 24/154 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++ G+ + V+++LP+ S D     PPY                +           F  Y 
Sbjct: 47  LMLGDVLEVMKELPSDSFDCCMTSPPY------------WGKREYDAGGIGLEPDFNTYI 94

Query: 83  AFTRAWLLACRRVLKPNGTLW-VIGSYHNI-------FRIGTML-QNLNFWILNDIVWRK 133
                      RVLK  G+ W  IG  +         +RI   L  N  + + N ++W K
Sbjct: 95  DNLCLVFSEVHRVLKKTGSFWLNIGDSYYNKNLLGLPWRIALNLTDNQGWILRNSVIWNK 154

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
               P+    R +N HE +        +  Y ++
Sbjct: 155 VKGGPDNSKDRLRNIHENVFHFVK---SSRYYYD 185


>gi|145627987|ref|ZP_01783788.1| putative type III restriction/modification system modification
           methylase [Haemophilus influenzae 22.1-21]
 gi|144979762|gb|EDJ89421.1| putative type III restriction/modification system modification
           methylase [Haemophilus influenzae 22.1-21]
          Length = 202

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 2/63 (3%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRI 265
           +KPEAL+ RI+  +T   DI+LD   GSGT+ AVA K+ R +IGIE + DYI+ +A +R+
Sbjct: 3   KKPEALIKRIIELTTNESDIVLDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIETLAVERL 61

Query: 266 ASV 268
             V
Sbjct: 62  KKV 64


>gi|167621206|ref|ZP_02389837.1| hypothetical protein BthaB_33186 [Burkholderia thailandensis Bt4]
          Length = 277

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 40/64 (62%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           Q+P ALL RI+  +T   D+I+DPF GSGT+   A  L R +IG +   D + I+ +R+A
Sbjct: 11  QQPLALLERIIEVTTNEEDLIVDPFMGSGTAIVAAVNLNRRWIGADTSDDAVTISAERLA 70

Query: 267 SVQP 270
            + P
Sbjct: 71  KLLP 74


>gi|289675321|ref|ZP_06496211.1| DNA methylase N-4/N-6 [Pseudomonas syringae pv. syringae FF5]
          Length = 176

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 57/179 (31%), Gaps = 58/179 (32%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            +I+ G+ I ++  LP +SV      PPY    +             V        +   
Sbjct: 9   HQILVGDCIDMMRTLPDESVHTCVTSPPYYGLRDY-----------GVEGQIGLEETPAE 57

Query: 81  YDAFTRAWLLACRRVLKPNGTLW-VIGSYH------------------------------ 109
           + A         RRVL+ +GT+W  +G  +                              
Sbjct: 58  FIARLVDVFREVRRVLRADGTIWVNMGDSYAGSWGAHGRDDMGVGVSTISQRQVMASQRK 117

Query: 110 ----------------NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL 152
                             +R+   LQ+  +++  DI+W K NPMP     R   AHE L
Sbjct: 118 SKTTTHAEYKPKDLMGMPWRLAFALQDDGWYLRQDIIWHKPNPMPESTRDRCTKAHEYL 176


>gi|326576689|gb|EGE26596.1| modification methylase MboIB [Moraxella catarrhalis 101P30B1]
          Length = 71

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/76 (48%), Positives = 47/76 (61%), Gaps = 5/76 (6%)

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
           +K  N D Q +  W +P     E+ + K     HPTQKP  LLSRI++SST+ GD+ILDP
Sbjct: 1   MKKLNGDKQAKDVWRLPAVGSWEKTQGK-----HPTQKPLGLLSRIILSSTQKGDLILDP 55

Query: 231 FFGSGTSGAVAKKLRR 246
           F GSGT+G  A  L R
Sbjct: 56  FSGSGTTGIAATILGR 71


>gi|188994727|ref|YP_001928979.1| DNA methylase N-4/N-6 [Porphyromonas gingivalis ATCC 33277]
 gi|188594407|dbj|BAG33382.1| DNA methylase N-4/N-6 [Porphyromonas gingivalis ATCC 33277]
          Length = 544

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 44/81 (54%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
               ++   N  G+      KPE L+S ++  +T+PGD++LD F GSGT+ AVA K+ R 
Sbjct: 300 YEDATKESINLFGDNAFDYPKPEMLISVLIQCATQPGDLVLDSFLGSGTTAAVAHKMGRR 359

Query: 248 FIGIEMKQDYIDIATKRIASV 268
           +IGIE+          R+  V
Sbjct: 360 YIGIELGDHAYTHCVPRLKKV 380



 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 48/142 (33%), Gaps = 19/142 (13%)

Query: 21  DKIIKGNSISVLEKL----PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +I G+++  L  L     A  V  I+ DPPYN                +    +D   
Sbjct: 38  NLLIHGDNLLALRSLVASGYAGKVKCIYIDPPYNTG--------------SAFTHYDDMQ 83

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
               + +  +  L   R +L P+G +++         +  +   +   +     +     
Sbjct: 84  EHSIWLSLMKQRLELLRELLAPDGVIFISIDDDECHYLKVICDEVFLRVNYCGSFIWEKK 143

Query: 137 M-PNFRGRRFQNAHETLIWASP 157
             P+F   +  +  E ++  + 
Sbjct: 144 RKPSFLNSQMGSVTEYVLCYAR 165


>gi|308062667|gb|ADO04555.1| type III R-M system methyltransferase [Helicobacter pylori Cuz20]
          Length = 657

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/82 (43%), Positives = 52/82 (63%), Gaps = 2/82 (2%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
                + + N+    L   +KPEAL+SRIL  ST+  D++LD F GSGT+ AVA K++R 
Sbjct: 457 TEDFWQGISNEGQITLKNGKKPEALISRILEVSTQENDLVLDFFAGSGTTCAVAHKMKRR 516

Query: 248 FIGIEMKQDYID-IATKRIASV 268
           +IGIE + DYI+ I  +R+  V
Sbjct: 517 YIGIE-QMDYIETITKERLKKV 537



 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 17/105 (16%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            + +IKGN++  L  L    AK V  I+ DPPYN   +   Y              D F 
Sbjct: 167 TNYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNY-------------NDNF- 212

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
           +  ++  F +  L A R  L  +G ++V    +    +  ++  +
Sbjct: 213 NHSSWLVFMKNRLEAAREFLSDDGVIFVQCDDNEQAYLKVLMDEI 257


>gi|115374287|ref|ZP_01461572.1| DNA methylase [Stigmatella aurantiaca DW4/3-1]
 gi|310818183|ref|YP_003950541.1| modification methylase [Stigmatella aurantiaca DW4/3-1]
 gi|115368708|gb|EAU67658.1| DNA methylase [Stigmatella aurantiaca DW4/3-1]
 gi|309391255|gb|ADO68714.1| Modification methylase [Stigmatella aurantiaca DW4/3-1]
          Length = 452

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 34/68 (50%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +  HPT K  AL+  +    T PG  +LD F GSG++G  A      FIG+E   DY  I
Sbjct: 369 QNHHPTVKSIALMRWLCRLITPPGGAVLDLFAGSGSTGVAALAEGFEFIGVERDPDYAAI 428

Query: 261 ATKRIASV 268
           A  RI   
Sbjct: 429 ACARIRHA 436



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 13/116 (11%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G++  V + L   S+D I  DPP  +   G+ +  D    D              + 
Sbjct: 12  LFLGDAAHVGQVLGPNSIDAIVTDPPAGIGFMGREWDEDKGGRD-------------EWI 58

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           A+    +     VLKP G   +           T ++N  F I + ++       P
Sbjct: 59  AWLSDVMRNAMHVLKPGGHALIWALPRTSHWTTTAVENAGFEIRDIVMHLFGTGFP 114


>gi|306818543|ref|ZP_07452266.1| DNA restriction-modification system, DNA methylase [Mobiluncus
           mulieris ATCC 35239]
 gi|304648716|gb|EFM46018.1| DNA restriction-modification system, DNA methylase [Mobiluncus
           mulieris ATCC 35239]
          Length = 419

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            G +   T KPE LL RI+   + PGDI+LD F GSGT+ AVA+K+ R ++  E+  D  
Sbjct: 128 PGMEPFTTPKPERLLERIIHIGSNPGDIVLDCFAGSGTTAAVAQKMGRRWVTCELVADTF 187

Query: 259 D-IATKRIASVQPLGNIELTVLTGK 282
           +     R+  V    +      T K
Sbjct: 188 ERFTKPRLMKVINDQDPGGVTYTKK 212


>gi|297627292|ref|YP_003689055.1| DNA methylase ( site-specific DNA-methyltransferase
           adenine-specific, type III restriction-modification
           system) [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296923057|emb|CBL57641.1| DNA methylase ( site-specific DNA-methyltransferase
           adenine-specific, Putative type III
           restriction-modification system) [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 666

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 58/143 (40%), Gaps = 1/143 (0%)

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
            D++ R     P+ +  R +           +  + G                   +   
Sbjct: 319 GDVMIRGGASAPSQQRARARIKALQWPEFFVTESSFGRKAYPPEQGQPPRTWWDNEEVGH 378

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
              + +E+     G     T KPE LL R++   + PGDI+LD F GSGT+ AVA+K+ R
Sbjct: 379 NRQAKAEQKALSTGGTTFSTPKPERLLERVIHIGSDPGDIVLDVFAGSGTTAAVAQKMGR 438

Query: 247 SFIGIE-MKQDYIDIATKRIASV 268
            ++  E ++  +      R+A V
Sbjct: 439 RWLTCELLESTFSTFTRPRLAKV 461



 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 72/219 (32%), Gaps = 28/219 (12%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKG---NSISVLEKLPA------KSVDLIFADPPYNLQ 52
            + +    +E  +      + +I G   + +  L ++P         V LI+ DPP+N  
Sbjct: 55  PKSDEFEYSERADLEPPEDNLLILGESGDVLEALTRVPELAEKYVGKVRLIYIDPPFNTA 114

Query: 53  LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
                             S++       +    R  LL  +++L  +G++WV      + 
Sbjct: 115 --------------QTFASYEDNLEHSIWLTMMRDRLLHMKKLLTDDGSIWVHLDNVEVH 160

Query: 113 RIGTMLQNL---NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
           R+  ++  +     ++   +  +  +P  + +G  F + H+T++    S           
Sbjct: 161 RMRLLMDAIFGPGNFLAEVVWQKADSPRGDAQG--FSSDHDTILVYGRSSTPHLNRMART 218

Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
           A   +           I          N    K HP+  
Sbjct: 219 ASDNSRFSNPDNDPQGIWFSDNRSAPANIGNRKQHPSTF 257


>gi|167721462|ref|ZP_02404698.1| DNA methylase [Burkholderia pseudomallei DM98]
          Length = 160

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 64/173 (36%), Gaps = 24/173 (13%)

Query: 96  LKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
           +KP G L     +  +  +  ++Q     +    VW K+      R   F    E ++WA
Sbjct: 1   MKPGGLLVSFIDWRQLPTLTDVVQAAGLILRGVAVWDKTLGRMRLRRGGFAQQAEFVVWA 60

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
           S         +                   +P+             K H T+KP   ++R
Sbjct: 61  SRGAMRGCDVYLPGVFPC-----------RLPLP------------KQHVTEKPLD-IAR 96

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            +V     G ++ D F GSGT  A A++    ++G E  Q Y  I++ R+ + 
Sbjct: 97  EVVRLVPAGGVVCDLFAGSGTFLAAAREAGLHWVGSESNQAYHAISSARLDAT 149


>gi|167717505|ref|ZP_02400741.1| DNA methylase N-4/N-6 domain protein [Burkholderia pseudomallei
           DM98]
          Length = 370

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 43/70 (61%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            G+ L  T KPE+L+ R+L   + PGD++ DP+ GSGT+ AVA K  R F+GIE  +   
Sbjct: 275 PGDPLFDTPKPESLIWRVLHIGSDPGDLVFDPYLGSGTTAAVAMKSGRRFVGIESGEHAA 334

Query: 259 DIATKRIASV 268
            IA  R+  V
Sbjct: 335 SIAAARMRQV 344



 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 64/187 (34%), Gaps = 20/187 (10%)

Query: 21  DKIIKGNSISVLEKL---PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + ++ G +++V++ +    +  V   + DPPY        Y              D  ++
Sbjct: 16  NFLVHGENLAVMKSMNAWLSGRVKCAYLDPPYRTGERFTHY--------------DDDAT 61

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E +     A +     +L  +G++W+      +  +   L  +                
Sbjct: 62  HEDWLRDVTARVRQTWELLAEDGSVWISIDDCEVHYLKVALDRVIGRGNFITTIIWQQRT 121

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                + F N HE L+  + +P+  G T N     A  +D++ R         G  +  +
Sbjct: 122 TRENRKVFSNNHEYLLVYAKNPRKFGQTRN---GLALTDDIRGRYVNHDNDPRGPWQSVS 178

Query: 198 KDGEKLH 204
            + +  H
Sbjct: 179 ANVQAGH 185


>gi|38233404|ref|NP_939171.1| putative DNA methylase [Corynebacterium diphtheriae NCTC 13129]
 gi|38199664|emb|CAE49323.1| Putative DNA methylase [Corynebacterium diphtheriae]
          Length = 667

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
             +    T KPE LL R++  +T PGDI+LD F GSGT+ AVA K+ R ++  E+ +D  
Sbjct: 392 PNQAAFSTPKPERLLERVIHIATNPGDIVLDCFAGSGTTAAVAHKMGRRWVTCELLEDTF 451

Query: 259 D-IATKRIASV 268
           +     R+  V
Sbjct: 452 NRFTVPRLTKV 462



 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 66/201 (32%), Gaps = 30/201 (14%)

Query: 21  DKIIKG---NSISVLEKLPA------KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
           + +I G   + +  L ++P         V  I+ DPP+N                    +
Sbjct: 74  NLLINGESGDVLEALTRVPELADKYVGKVKCIYIDPPFNTA--------------QTFAN 119

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN---LNFWILND 128
           ++       +    R  LL  +++L  +G++WV        R+  ++        ++   
Sbjct: 120 YEDNLEHSVWLTMMRDRLLHMKKLLSEDGSIWVHLDDVENHRMRLLMDEVFGAGNFVAEV 179

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
           +  +  +P  + +G       +T++    S +         A   A        D   P 
Sbjct: 180 VWEKTYSPRNDSKG--IPAVTDTILVYRKSDQFSPNRLPRTAEMNARYKNPDH-DRNGPW 236

Query: 189 CSGSERLR-NKDGEKLHPTQK 208
            SG      N  G+  HP+  
Sbjct: 237 KSGDTTAPGNMSGKVQHPSVF 257


>gi|33770568|ref|NP_892105.1| DNA adenine-methylase [Yersinia phage PY54]
 gi|33636151|emb|CAD91820.1| DNA adenine-methylase [Yersinia phage PY54]
          Length = 357

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 17/117 (14%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAY 81
           ++  +S+  ++ LP   +D I  DPPY                   ++SWD +++S   +
Sbjct: 12  LVHADSLQYIKTLPDNYIDAIITDPPY---------------YRVKSNSWDNQWASVPDF 56

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            A+   +     RVLKPNG+L++            ++++  F +LN IVW K +   
Sbjct: 57  LAWLDEFFAEFWRVLKPNGSLYLFCGPKLSADTEILMRD-RFNVLNHIVWAKPSGRW 112



 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 45/84 (53%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P  +       +     HP +KP  ++  I+ +ST+PGD++ D F GSG +   A++L 
Sbjct: 271 VPHTNVWTYPPVQHYPGKHPCEKPLPMMLDIIAASTRPGDLVADFFMGSGATIKAAEQLG 330

Query: 246 RSFIGIEMKQDYIDIATKRIASVQ 269
           R  +G+E++++        + +++
Sbjct: 331 RRSLGVELEEERFLQTVSELKALE 354


>gi|323340597|ref|ZP_08080850.1| methylase [Lactobacillus ruminis ATCC 25644]
 gi|323091970|gb|EFZ34589.1| methylase [Lactobacillus ruminis ATCC 25644]
          Length = 654

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 6/137 (4%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           G+  L    G+K+  T KPE LL  ++ + +  G+I+LD F GS T+ AVA K+ R FIG
Sbjct: 450 GTNELIALFGKKVFDTPKPEKLLCHLIKAGSNKGNIVLDFFMGSATTQAVAMKMGRRFIG 509

Query: 251 IEMKQDYID-IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER--GLIQPGQILTN 307
           IE + DYI+ I+  R+  V       ++   G +      +  L+E+  G +   Q  TN
Sbjct: 510 IE-QMDYIETISVPRLQKVIEGEQGGISKDVGWQGGGSFVYAELMEKNQGYLHDLQKATN 568

Query: 308 AQG--NISATVCADGTL 322
            +    +   +  +  L
Sbjct: 569 VKELMRVYDRMKENADL 585



 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 53/140 (37%), Gaps = 19/140 (13%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           Q+S+ +  + +IKGN++  L  +    A  V +I+ DPPYN   +   Y           
Sbjct: 172 QSSLSDDDNLVIKGNNLIALHSIKRRYAGKVKMIYIDPPYNTGSDSFEYNDHFKR----- 226

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY--HNIFRIGTMLQNLNFWILN 127
                      +  F +  L   R +L  +G ++V       N   I          IL 
Sbjct: 227 ---------STWLTFMKNRLEIARELLSKDGLIFVNIDSSRSNCKSIKGTTMEPYLHILM 277

Query: 128 DIVWRKSNPMPNFRGRRFQN 147
           D ++ +SN +     ++ + 
Sbjct: 278 DNIFGESNYIGTLDWKKKKQ 297


>gi|54296174|ref|YP_122543.1| hypothetical protein lpp0197 [Legionella pneumophila str. Paris]
 gi|53749959|emb|CAH11344.1| hypothetical protein lpp0197 [Legionella pneumophila str. Paris]
          Length = 646

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 6/128 (4%)

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWL-IPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
            P+ K         +   +   +++ WL IPI +   +         +PTQKP ALL RI
Sbjct: 278 MPEDKNARIYRKIYEDTYQGQMIQNIWLDIPIVNPMAK-----ERVNYPTQKPIALLERI 332

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
           + +S+  GD+I D F GSGT+G  A+KL R +I +++ +  I  + KR+  +     I  
Sbjct: 333 ITTSSNTGDLIADFFCGSGTAGLAAEKLGRRWIMVDLGRFAIHTSRKRLLDINSTPFIVQ 392

Query: 277 TVLTGKRT 284
            +   +R 
Sbjct: 393 NLGKYERQ 400



 Score = 66.2 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 61/166 (36%), Gaps = 22/166 (13%)

Query: 18  EWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSL---------- 64
            W +++I G +  V+  L  +    + LI+ DPP+    +                    
Sbjct: 45  NWDNRLIWGENFLVMSSLLKEFAGKIQLIYIDPPFATGQDFSYTVNIGEHTEAMKIPSAL 104

Query: 65  -VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN- 122
            V A  D+W K +  E+Y       L   + +L  NG L+V   +   + +  +L  +  
Sbjct: 105 EVKAYRDTWGKGT--ESYLQMMYDRLSIMKDLLAENGCLYVHCDWRVNYLLRFILNEIFG 162

Query: 123 -FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
               +N+I+WR+         +        L++       K Y FN
Sbjct: 163 EENFINEIIWRRKQAQSWSANQFGVTNDSILLYTK----GKDYIFN 204


>gi|42561467|ref|NP_975918.1| adenine-specific DNA-methyltransferase [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|42492966|emb|CAE77560.1| Adenine-specific DNA-methyltransferase [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
          Length = 247

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 71/164 (43%), Gaps = 18/164 (10%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKS--VDLIFADPPYNLQLNGQLY 58
           + + N + INEN         KI   +S  ++E+    S  V+ I  DPPYN+  +   +
Sbjct: 79  IKKINEIYINENI--------KIYNADSYKIVEQFINNSTKVNHIITDPPYNISQSNNFH 130

Query: 59  RPDHSLVDAVT-DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
               +    +    WD       YD    +W+    ++L  NG++ +  SY  I  I   
Sbjct: 131 TLRSANRQGLNFGKWD-------YDFDLISWIKPYSKLLDKNGSMIIFCSYKYISFIIEE 183

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
           L++    I + I W K+NPMP    RR+    E  IWA    ++
Sbjct: 184 LESNMLEIKDVIKWVKTNPMPRNVNRRYVQDTEYAIWAVKKNQS 227


>gi|307151130|ref|YP_003886514.1| DNA methylase N-4/N-6 domain-containing protein [Cyanothece sp. PCC
           7822]
 gi|306981358|gb|ADN13239.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7822]
          Length = 329

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 49/318 (15%), Positives = 103/318 (32%), Gaps = 91/318 (28%)

Query: 24  IKGNSISVLE-----KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
             G +  VL+     K   + + LIF  PP+ L           S  + + D        
Sbjct: 19  YVGEAEKVLKESYFCKFKGQ-IQLIFTSPPFPLN-------SKKSYGNMLGD-------- 62

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWV--IGSYHNIFRIGTM-----------LQNLNFWI 125
             Y  +          +L  +G++ +    S+ +   + ++               N  +
Sbjct: 63  -EYLQWFTDLAPLFAEMLTEDGSIVIELGNSWESQRPVQSLLPLQSLLSFVSCAGTNLRL 121

Query: 126 LNDIVWRKSNPMPNFRGR------RFQNAHETLIWASPSPKAKG---------------- 163
           + + +    + +P+          R  +++  L W + +   K                 
Sbjct: 122 IQEFICYNPSRLPSPANWVTVNRIRTVDSYTRLWWVAKTDSPKADNSKVLRPYSERMKYL 181

Query: 164 -YTFNYDALKAANEDVQMRSDWLIP---------------------------------IC 189
             T NY++ K  +E    ++ +L                                     
Sbjct: 182 LRTGNYNSGKRPSEHKIGKTSFLKDCGGSIAHNFLELDDMDSQRKVRLPNAFSYSNSSSN 241

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           +   +   +     HP + P  L +  +   T PGD +LDPF GS T+G  A +L R ++
Sbjct: 242 NFFAKTCKERKITPHPARMPMGLPAFFIEFLTDPGDWVLDPFAGSNTTGYAAARLNRKWL 301

Query: 250 GIEMKQDYIDIATKRIAS 267
            I+ ++ +++ +  R   
Sbjct: 302 AIDAEKQFVEQSKIRFED 319


>gi|323181044|gb|EFZ66580.1| DNA modification methylase-like protein [Escherichia coli 1180]
          Length = 123

 Score = 83.5 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 15/126 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +       R   ++   V D W + +S E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RSGRTIAGDVNDDWLQPASNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                       RVLK +  +     +H I R         F +   +V+   N  P   
Sbjct: 60  ------------RVLKKDALMVSFYGWHRIDRFMAAWIRAGFSVAGHLVFIDRNLNPKKI 107

Query: 142 GRRFQN 147
            +  +N
Sbjct: 108 KKTPKN 113


>gi|261840081|gb|ACX99846.1| hypothetical protein HPKB_1299 [Helicobacter pylori 52]
          Length = 378

 Score = 83.1 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/64 (53%), Positives = 46/64 (71%), Gaps = 2/64 (3%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKR 264
           T KPEAL+ RIL  ST+  D++LD F GSGT+ AVA K++R +IGIE + DYI+ I  +R
Sbjct: 196 TPKPEALIQRILEISTQENDLVLDFFAGSGTTCAVAHKMKRRYIGIE-QMDYIETITKER 254

Query: 265 IASV 268
           +  V
Sbjct: 255 LKKV 258


>gi|213967436|ref|ZP_03395584.1| DNA-methyltransferase (DNA-modification methylase) protein
           [Pseudomonas syringae pv. tomato T1]
 gi|213927737|gb|EEB61284.1| DNA-methyltransferase (DNA-modification methylase) protein
           [Pseudomonas syringae pv. tomato T1]
          Length = 148

 Score = 83.1 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 35/73 (47%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPT KP  L++ +L   T  G   LDPF GSG++G  A      FIGIE    Y+ IA  
Sbjct: 61  HPTVKPTDLMAYLLRLVTPTGGKTLDPFMGSGSTGKAAVLEGFDFIGIEQDAAYMAIAKA 120

Query: 264 RIASVQPLGNIEL 276
           RI         + 
Sbjct: 121 RIGHAHANSQAQQ 133


>gi|315932575|gb|EFV11507.1| DNA methylase family protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 336

 Score = 83.1 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 78/212 (36%), Gaps = 16/212 (7%)

Query: 58  YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF-RIGT 116
           YR    L +   +         +YD +T + L       K + ++      + IF ++  
Sbjct: 9   YRGRELLNEVFGEENFVNEIVWSYDKWTSSGLS----FQKNHDSIMFFKKDNIIFNKLKE 64

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
           +  NL                         N             +  Y   Y  +     
Sbjct: 65  ITDNLKEKYKKGYSLGGGFGKDGLVVYDKNNEK-----VKKMIDSGKYKVVYADVDGK-- 117

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
              M+  W IP  +       +   + + TQKPEALL RI+ +S+    I+ D   GSGT
Sbjct: 118 --PMKDVWAIPFINPVS--IERIEVENNLTQKPEALLQRIIKASSNENSIVFDYHLGSGT 173

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           + A A KL+R ++G+EM + +  +   R+  V
Sbjct: 174 TIATAHKLKRKWLGVEMGEHFYKVIIPRMKKV 205


>gi|254560999|ref|YP_003068094.1| site-specific DNA methyltransferase [Methylobacterium extorquens
           DM4]
 gi|254268277|emb|CAX24213.1| putative site-specific DNA methyltransferase [Methylobacterium
           extorquens DM4]
          Length = 571

 Score = 83.1 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 39/71 (54%)

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           ++     HPT KP  L+  ++   T PG  +LDPF GSG++G  A +     +G E+  D
Sbjct: 461 DRGSGNHHPTVKPSNLMRYLVRLVTPPGGTVLDPFLGSGSTGKAAVEEGFGIVGCELMPD 520

Query: 257 YIDIATKRIAS 267
           Y+ IA  RIA 
Sbjct: 521 YVRIARSRIAD 531



 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 23/135 (17%)

Query: 22  KIIKGNSISVLEKLPAKSV--DLIFADPPYNLQLNGQLYRPDHSLVDA------------ 67
           ++I+G+  +++ +L A+ V  D    DPPY+L +  +  R + + +              
Sbjct: 150 RVIQGDCRAIMLELAAEGVQFDACVTDPPYHLSIAKRFGRKNSAPLKGGEPGSANPYRAM 209

Query: 68  ----VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
               +   WD         AF      A   VLKP G L   G      R+   +++  F
Sbjct: 210 ANGFMGQDWDGGG-----VAFDADTWRAVYNVLKPGGYLVAFGGTRTFHRLAVAVEDAGF 264

Query: 124 WILNDIVWRKSNPMP 138
            I + I W      P
Sbjct: 265 EIRDTISWVFGTGFP 279


>gi|145630146|ref|ZP_01785928.1| putative type III restriction/modification system modification
           methylase [Haemophilus influenzae R3021]
 gi|144984427|gb|EDJ91850.1| putative type III restriction/modification system modification
           methylase [Haemophilus influenzae R3021]
          Length = 277

 Score = 83.1 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IAT 262
               KPE L+S  + + T P DI+LD F GSGT+ AVA K+ R +IGIE + DYI+ +A 
Sbjct: 75  FSNPKPETLISFFIKAITTPKDIVLDFFSGSGTTAAVAHKMNRQYIGIE-QMDYIETLAV 133

Query: 263 KRIASV 268
           +R+  V
Sbjct: 134 ERMKKV 139


>gi|85717732|ref|ZP_01048664.1| prophage LambdaW4, DNA methylase [Nitrobacter sp. Nb-311A]
 gi|85695448|gb|EAQ33374.1| prophage LambdaW4, DNA methylase [Nitrobacter sp. Nb-311A]
          Length = 193

 Score = 83.1 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 1/94 (1%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPT KP AL++  L   +K G+ ++DPF GSG++   A+   R  +G E+   Y+D+A +
Sbjct: 15  HPTPKPVALIADALRDVSKRGEYVVDPFLGSGSTLMAAEATGRICVGNELDSAYVDVAIR 74

Query: 264 RIASVQPLGNIELTVLTGKRTEPR-VAFNLLVER 296
           R         I +          + +A   L+E 
Sbjct: 75  RWQKATGQAAIHVQTGQSFDAIAQAIAETALIEA 108


>gi|308234572|ref|ZP_07665309.1| DNA (cytosine-5-)-methyltransferase [Atopobium vaginae DSM 15829]
          Length = 637

 Score = 83.1 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 2/90 (2%)

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
              D +     G   ++    + +  T K E L+ RIL  +T  GD++ D F GSGT+ A
Sbjct: 426 WTRDEVGDSQEGKREIKALHFDSIFDTPKQERLIERILTLATNEGDLVFDSFVGSGTTAA 485

Query: 240 VAKKLRRSFIGIEMKQDYI-DIATKRIASV 268
           VA K+ R +IG+E + DYI DI  +R+  V
Sbjct: 486 VAHKMGRRYIGVE-QMDYIQDITVERLKKV 514



 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 66/153 (43%), Gaps = 20/153 (13%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
           E   +  +  + IIKGN++  L  L       V  I+ DPPYN Q +             
Sbjct: 179 ETGITFNDNDNLIIKGNNLIALASLLKRYEGKVKCIYIDPPYNTQND------------- 225

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWI 125
            + +++   +   +  F +  L   R++L+ +GT+W+    H    +  +  ++      
Sbjct: 226 -SFNYNDSFNHSTWLTFMKNRLELARKLLREDGTIWISCDDHESHYLKVLTDDVFNRDNF 284

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
           +++IVW+++   P    +    +H+ ++  + +
Sbjct: 285 IDEIVWQRAYA-PINLKKTLSRSHDIILVYAKN 316


>gi|254805305|ref|YP_003083526.1| putative type III DNA modification methylase [Neisseria
           meningitidis alpha14]
 gi|254668847|emb|CBA06907.1| putative type III DNA modification methylase [Neisseria
           meningitidis alpha14]
          Length = 562

 Score = 83.1 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 1/86 (1%)

Query: 184 WLIPICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           W     + +E  +  +       T KPE LL ++L  +T PGD++LD F GSGT+GAVA 
Sbjct: 279 WWDDAGTATEGTKELQKMNFDFDTPKPERLLEKVLQIATNPGDLVLDSFAGSGTTGAVAH 338

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASV 268
           K+ R +I +E+ +        R+  V
Sbjct: 339 KMGRRWIMVELGEHCHTHIIPRLQKV 364



 Score = 70.0 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 70/217 (32%), Gaps = 21/217 (9%)

Query: 19  WKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + +++I G+++  L+ L  +    V  +F DPPYN                +    +D  
Sbjct: 43  FDNRLIFGDNLLALKALEQEFTSKVKCVFIDPPYNTG--------------SAFAHYDDG 88

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRK 133
                +    R  L   +R+L  +G+LW+    +    +  +   +      + +IVW  
Sbjct: 89  LEHSIWLGLMRDRLEIIKRLLSDDGSLWITIDDNEAHYLKVLCDEVFGRGNFIANIVWNH 148

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
              + +       + H  +   S            DA K +N D   R  W         
Sbjct: 149 RKSVQSDIVISLSHNHLLVFAKSKDKVTLNRLQLVDAEKYSNPDNDPRGLWYATPFDAPN 208

Query: 194 RLRNKDGEKLHPTQKPEALL--SRILVSSTKPGDIIL 228
              N      +P    E L    R   ++ +     L
Sbjct: 209 IRPNLTYPITNPNTGEEYLPPKGRCWRTTQEEYLKAL 245


>gi|325134389|gb|EGC57034.1| hypothetical protein NMBM13399_0829 [Neisseria meningitidis M13399]
          Length = 700

 Score = 83.1 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 2/70 (2%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K+  T KPE+LL  ++  +T   DI+LD   GSGT+ AVA K+ R +IGIE + DYI+
Sbjct: 499 GSKVFTTPKPESLLQYLIQIATSESDIVLDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIE 557

Query: 260 -IATKRIASV 268
            +A +R+  V
Sbjct: 558 TLAVERLKKV 567



 Score = 62.7 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 58/166 (34%), Gaps = 17/166 (10%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       V LI+ DPPYN   +G  Y              DKF +
Sbjct: 227 NLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTGNDGFKY-------------NDKF-N 272

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
              +  F +  L   + +L  +G+++V    +    +  ++  +         +      
Sbjct: 273 HSTWLTFMKNRLEIAKELLMKDGSIFVSIDDNEQAYLKILMDEVFGNENFICNFIWEKKT 332

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
                ++     E ++  S + K      N  +       +  + +
Sbjct: 333 GASDAKQIATITEFVLCYSKNFKTVKLNKNTFSYDTERYKLSDKFE 378


>gi|145638132|ref|ZP_01793742.1| putative type III restriction/modification system modification
           methylase [Haemophilus influenzae PittII]
 gi|145272461|gb|EDK12368.1| putative type III restriction/modification system modification
           methylase [Haemophilus influenzae PittII]
          Length = 396

 Score = 83.1 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 41/179 (22%), Positives = 71/179 (39%), Gaps = 10/179 (5%)

Query: 94  RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           R  + +  L+     +        L +       +  +   N +   +G+ +    E + 
Sbjct: 86  RNNEKDKKLYRFQDKNGRVY---RLSDFTQKGQGEARYFGENLIEPPKGKHWIWTQEKID 142

Query: 154 WASPSP---KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
               +     +K    +        E + +   W                 +    QKPE
Sbjct: 143 EGMKNDLIVFSKNGMPSVKRFLDEKEGIPLSDLWEDDFVQIVS--STSSERQDFDGQKPE 200

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRIASV 268
           AL+ RI+  +T   DI+LD   GSGT+ AVA K+ R +IGIE + DYI+ +A +R+  V
Sbjct: 201 ALIKRIIELTTNESDIVLDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIETLAVERLKKV 258


>gi|255021942|ref|ZP_05293950.1| DNA methylase [Acidithiobacillus caldus ATCC 51756]
 gi|254968578|gb|EET26132.1| DNA methylase [Acidithiobacillus caldus ATCC 51756]
          Length = 481

 Score = 83.1 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 80/230 (34%), Gaps = 15/230 (6%)

Query: 1   MSQKN-SLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR 59
           M  K+ S+ +        E +  I  G+ + VL  LP    D +  DPPY+L    +   
Sbjct: 1   MKSKDTSMMLPIFAEPEAESRYAIRVGDLLDVLPTLPENHFDGVLCDPPYHLTQKSRGGS 60

Query: 60  PDHSLVDAVTD----SWDKFSSFEAYD----AFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
              +  D          D+    E +D    AF      A  RV+KP G L   G     
Sbjct: 61  TRKANEDDPYGRHGVGTDRGFMGETWDGGDIAFRPETWRAVMRVMKPGGYLMAFGGSRTF 120

Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRG-----RRFQNAHETLIWASPSPKAKGYTF 166
            R+    ++  F + + ++W   N  P          R       ++     P  K    
Sbjct: 121 HRLAVAFEDAGFVLADTLMWLYGNGFPKNLDLSKAMDRHFGMQRPVVGKRKHPTLKNSDL 180

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSER-LRNKDGEKLHPTQKPEALLSR 215
             +A  AA+     R +W + +   ++    N  G  L P  +P  L  +
Sbjct: 181 VEEAANAAHGKNFWRREWDVTLPGHADSARWNGYGTALKPAYEPILLCRK 230



 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 204 HPTQKPEALLSRI---LVSSTKPGD--IILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDY 257
           HPT KP  L   +   ++  ++  D   +L PF G+G+    A +     + GIE  + Y
Sbjct: 408 HPTLKPIDLTRYLANLILPPSRGDDSRRLLVPFSGAGSEMIGALQAGWDTVLGIEQSEHY 467

Query: 258 IDIATKRI 265
            +IA KR+
Sbjct: 468 AEIARKRL 475


>gi|307354431|ref|YP_003895482.1| DNA methylase N-4/N-6 domain-containing protein [Methanoplanus
           petrolearius DSM 11571]
 gi|307157664|gb|ADN37044.1| DNA methylase N-4/N-6 domain protein [Methanoplanus petrolearius
           DSM 11571]
          Length = 419

 Score = 83.1 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 53/328 (16%), Positives = 84/328 (25%), Gaps = 122/328 (37%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K  +I  + I  L+KLP +SV  +   PPY    +             +        + E
Sbjct: 2   KHTLINADVIKGLQKLPVQSVHTVVTSPPYWSLRDY-----------GIEGQIGLEETPE 50

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHN----------------------------- 110
           A+           RRVL+ +GTLW+                                   
Sbjct: 51  AHIQKIVEVFREVRRVLRDDGTLWLNYGDCYTSGNKTGHGSKIGWKQQTNRGSDGLRDAP 110

Query: 111 ----------------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
                            +RI   LQ   +++  DIVW K NPMP     R   +HE +  
Sbjct: 111 RLPMPAGLKNKDLVGMPWRIALALQEDGWYLRCDIVWNKPNPMPESVNDRPTRSHEYIFL 170

Query: 155 ASPSPKAK--------------GYTFNYDALKAANEDVQMR------------------- 181
            + SP+                 +  +Y        +   R                   
Sbjct: 171 MTKSPQYFYDAEAIRENVSGGAHHRGDYKGDLPKTANPGKRIKNNSSFTKACWGSSDPRV 230

Query: 182 ---------------------SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
                                 D           +  +     H    P+ L  R +++ 
Sbjct: 231 SSSSRNLQGHSGNLNSEGKPLCDKFSRNARSVWTIPTQPRPDAHFATFPDELARRCILAG 290

Query: 221 TKPGDIILDPFFGS----------GTSG 238
           T        P  G+          GT+G
Sbjct: 291 TSEYGCC--PHCGTPWVRIVKTEGGTTG 316



 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
           T     +LDPF GSGT   +A++  RS I IE+   Y+++  +R+ + + L 
Sbjct: 358 TPIPCTVLDPFGGSGTVADIAREQNRSSILIEINPSYVEMQKQRLRADEQLD 409


>gi|296100150|ref|YP_003620434.1| type III restriction-modification system methylation subunit
           [Leuconostoc kimchii IMSNU 11154]
 gi|295831580|gb|ADG39465.1| type III restriction-modification system methylation subunit
           [Leuconostoc kimchii IMSNU 11154]
          Length = 645

 Score = 83.1 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 66/169 (39%), Gaps = 21/169 (12%)

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAH--------ETLIWASPSPKAKGYTFNYD-- 169
           N    +  +I+      +    GR ++           E  I+      AK     Y   
Sbjct: 350 NFRANLQYEIITPSGRHVLPANGRHWRTEKSTYEKLLSENKIYFGKDGNAKPSLKAYYSE 409

Query: 170 ---------ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
                    A     ++  +  D        ++       E +    KPE L+ RIL  S
Sbjct: 410 VAEAGKGKTASTIWRDNNSIIWDDAGTNTKATQHQVELFSENVFTNPKPEQLIKRILEIS 469

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRIASV 268
           T   D++LD F GS T+ AVA K+ R FIG+E + DYI  ++ +R+  V
Sbjct: 470 TNENDLVLDFFMGSATTQAVAMKMNRRFIGVE-QMDYIKTVSVERLKKV 517



 Score = 43.8 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 13/108 (12%)

Query: 17  FEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           F   + IIKGN++  L  L      +V  IF DPPY  +          +   A T +++
Sbjct: 178 FNDDNLIIKGNNLIALHSLKNRYAGTVKSIFIDPPYFFE----------TTKPADTYTYN 227

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
                  +  F +  +     +L  NGTL++  S      I  ++ ++
Sbjct: 228 SNFKLSGWLTFVQNRIKIAHELLAENGTLFLTMSDEGAHYIKILMDSI 275


>gi|260469736|ref|ZP_05813895.1| DNA methylase N-4/N-6 domain protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259028468|gb|EEW29785.1| DNA methylase N-4/N-6 domain protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 347

 Score = 83.1 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 91/304 (29%), Gaps = 51/304 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYN--LQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           I +G+S  ++  +P  SV      PP+    + +G      +S        + +F   E 
Sbjct: 20  IYQGDSCELIRAVPGDSVHFGVHSPPFEGLYKFSGSDRDLSNSEGKTFWQHY-QFLISEM 78

Query: 81  YDAFTRAWLLACRRVLKPNG----TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
                   + A   +  P          +  +     +    Q+  +   +++   K   
Sbjct: 79  LRITMPGRIQAVHVMQLPTSKRRDGFIGMRDFRG--EVIRAWQDAGWQFHSEVCIWKDAV 136

Query: 137 MPNFRGRRFQNAH----------------------------ETLIWASPSPKAKGYTFNY 168
           +   R +  +  H                            E +  A      +G   ++
Sbjct: 137 VAQARSKSHRLNHKQVVKDSTISGQALADYIVAFRKPGDNPEPVSGALKRYVGEGEGPDF 196

Query: 169 DALKAANEDVQM-----RSDWLIPICSGSERLRN-------KDGEKLHPTQKPEALLSRI 216
                 N+            +  P+     + R           ++ H +     ++ R 
Sbjct: 197 QKFTTDNDSRNWFSIEVWQRYASPVWMDIRQTRTLQYLTARDGNDEAHISPLQLDVIDRC 256

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
           +   + PGDI+  PF G G+    A +  R  +G E+K  Y   A  RI   +    +  
Sbjct: 257 IDLWSNPGDIVFTPFLGIGSEVWAAVQSGRRGLGFELKDKYFRQA--RINMTRETAAVSA 314

Query: 277 TVLT 280
             LT
Sbjct: 315 DALT 318


>gi|148826327|ref|YP_001291080.1| putative type III restriction/modification system modification
           methylase [Haemophilus influenzae PittEE]
 gi|148716487|gb|ABQ98697.1| putative type III restriction/modification system modification
           methylase [Haemophilus influenzae PittEE]
          Length = 713

 Score = 83.1 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 42/64 (65%), Gaps = 2/64 (3%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKR 264
            +KPE LL RI+  ST   DI+LD F GSGT+ AVA K+ R FI IE + DYI+ I  +R
Sbjct: 513 AKKPETLLQRIIEISTNENDIVLDFFAGSGTTAAVAMKMNRQFITIE-QMDYIETITKER 571

Query: 265 IASV 268
           +  V
Sbjct: 572 LKKV 575



 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 17/104 (16%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       V LI+ DPPYN   +G  Y              DKF +
Sbjct: 203 NLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTGNDGFKY-------------NDKF-N 248

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
              +  F +  L   R +L  +G ++V    +    +  ++  +
Sbjct: 249 HSTWLTFMKNRLEVARELLSDDGVIFVQCDDNEQAYLKVLMDEI 292


>gi|328944361|ref|ZP_08241824.1| adenine specific DNA methylase Mod [Atopobium vaginae DSM 15829]
 gi|327491076|gb|EGF22852.1| adenine specific DNA methylase Mod [Atopobium vaginae DSM 15829]
          Length = 557

 Score = 83.1 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 2/90 (2%)

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
              D +     G   ++    + +  T K E L+ RIL  +T  GD++ D F GSGT+ A
Sbjct: 426 WTRDEVGDSQEGKREIKALHFDSIFDTPKQERLIERILTLATNEGDLVFDSFVGSGTTAA 485

Query: 240 VAKKLRRSFIGIEMKQDYI-DIATKRIASV 268
           VA K+ R +IG+E + DYI DI  +R+  V
Sbjct: 486 VAHKMGRRYIGVE-QMDYIQDITVERLKKV 514



 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 66/153 (43%), Gaps = 20/153 (13%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
           E   +  +  + IIKGN++  L  L       V  I+ DPPYN Q +             
Sbjct: 179 ETGITFNDNDNLIIKGNNLIALASLLKRYEGKVKCIYIDPPYNTQND------------- 225

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWI 125
            + +++   +   +  F +  L   R++L+ +GT+W+    H    +  +  ++      
Sbjct: 226 -SFNYNDSFNHSTWLTFMKNRLELARKLLREDGTIWISCDDHESHYLKVLTDDVFNRDNF 284

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
           +++IVW+++   P    +    +H+ ++  + +
Sbjct: 285 IDEIVWQRAYA-PINLKKTLSRSHDIILVYAKN 316


>gi|295099437|emb|CBK88526.1| DNA modification methylase [Eubacterium cylindroides T2-87]
          Length = 194

 Score = 83.1 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 8/124 (6%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP--------DHSLVDAVTDSWD 73
           +I+ G+++ +++       D +  DPPY      Q  R              +A+ D   
Sbjct: 27  RILHGDTLKLVKGFQPGIFDAVITDPPYASGGTKQNERNRTTNQKYSSMKAENALPDFDG 86

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                 ++  +   WL   R+  K    + +   +     I   LQ   +      VW K
Sbjct: 87  DNKDQRSWTHWMAEWLYDVRKACKRGAPICLFIDWRQYPSITDALQWAGWIWRGTAVWDK 146

Query: 134 SNPM 137
             P+
Sbjct: 147 GTPV 150


>gi|261400318|ref|ZP_05986443.1| type III restriction/modification enzyme, methylase subunit
           [Neisseria lactamica ATCC 23970]
 gi|269209938|gb|EEZ76393.1| type III restriction/modification enzyme, methylase subunit
           [Neisseria lactamica ATCC 23970]
          Length = 701

 Score = 83.1 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 2/70 (2%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K+  T KPE+LL  ++  +T   DI+LD   GSGT+ AVA K+ R +IGIE + DYI+
Sbjct: 495 GSKVFTTPKPESLLQYLIQIATSESDIVLDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIE 553

Query: 260 -IATKRIASV 268
            +A +R+  V
Sbjct: 554 TLAVERLKKV 563



 Score = 60.8 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 58/166 (34%), Gaps = 17/166 (10%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       V LI+ DPPYN   +G  Y              DKF+ 
Sbjct: 223 NLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTGNDGFKY-------------NDKFNR 269

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
              +  F +  L   + +L  +G+++V    +    +  ++  +         +      
Sbjct: 270 -STWLTFMKNRLEIAKELLMEDGSIFVSIDDNEQAYLKILMDEVFGNENFICNFIWEKKT 328

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
                ++     E ++  S + K      N  +       +  + +
Sbjct: 329 GASDAKQIATITEFVLCYSKNFKTVKLNKNTSSYDTERYKLSDKFE 374


>gi|134299056|ref|YP_001112552.1| DNA methylase N-4/N-6 domain-containing protein [Desulfotomaculum
           reducens MI-1]
 gi|134051756|gb|ABO49727.1| DNA methylase N-4/N-6 domain protein [Desulfotomaculum reducens
           MI-1]
          Length = 330

 Score = 82.7 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 51/315 (16%), Positives = 102/315 (32%), Gaps = 60/315 (19%)

Query: 23  IIKGNSISVLEKLPAKSVD-LIFADPPYN--LQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +  G+ + V + LP  S+   IF  PP++     +       +S  D       ++   E
Sbjct: 16  LYLGDCVEVTKGLPDNSIHYSIF-SPPFSSLYTYSNNERDMGNSRNDEEFMEHFRYLISE 74

Query: 80  AYDAFTRAWLLACRRVLKP-----NGTL-----------WVIGSYHNIFRIGTMLQN--- 120
            Y       L++   +  P     +G +             I +         + ++   
Sbjct: 75  LYRVTIPGRLVSFHCMDIPAMKSRDGFIGIKDFSGSLLRMFINNNFIYHSKTVIWKDPLV 134

Query: 121 -----------LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA-------------- 155
                          + +  + R+  P      R+  +  E +                 
Sbjct: 135 EATRTKALGLLHKQIVKDSAMCRQGLPDYLITVRKPGDNPEPVSHPDGFSRFYGENEPEA 194

Query: 156 -SPSPKAKGYTFNYDALKAANEDVQMRSDWL---IPIC-------SGSERLRNKDGEKLH 204
               P  K    +     A  + V     W     P+        +   R   ++ ++ H
Sbjct: 195 PKTKPTLKDSQKHKTISLAKTDPVYSHHVWRRYASPVWMDIRQTNTLQYRSAREEKDEKH 254

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
                  +++R +   + PGD++  PF G G+ G  A  + R F+GIE+K+ Y  IA   
Sbjct: 255 ICPLQLDVIARGVELWSNPGDVVFSPFMGIGSEGYQAVLMGRRFVGIELKESYFKIAANN 314

Query: 265 IA-SVQPLGNIELTV 278
           +  +V  L  I+  +
Sbjct: 315 LKMAVDELNEIDELL 329


>gi|329121578|ref|ZP_08250199.1| methyltransferase [Dialister micraerophilus DSM 19965]
 gi|327468733|gb|EGF14210.1| methyltransferase [Dialister micraerophilus DSM 19965]
          Length = 380

 Score = 82.7 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 58/262 (22%), Positives = 99/262 (37%), Gaps = 18/262 (6%)

Query: 49  YNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
           Y +  +G+ +      +  V ++++     + +D          ++ ++ N         
Sbjct: 47  YTIYFDGETFTSLRDKIIKVFENYENIDIKKYFD------FKDIKKYIQKNHEKIYRRDK 100

Query: 109 HNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
            + + +  + +    +   +    KS           +N+ E  +        +      
Sbjct: 101 PSKWAVDRIDEKFKIFERKE----KSKSRNYVYKVFKENSDEYELIFDTDSGYERMEPLS 156

Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP-TQKPEALLSRILVSSTKPGDII 227
                  E   +R D+            NK+G K     QKPE L+  IL+SSTK  DI+
Sbjct: 157 WKFNEDKELTILRGDFWDVGYEKDMGNINKEGIKGFGEGQKPERLIKDILLSSTKENDIV 216

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI-DIATKRIASVQPLGNIELTVLTGKRTEP 286
           LD   GSGT+ AVA K+ R +IGIE + DYI DI  +R+  V     IE       +   
Sbjct: 217 LDFNLGSGTTAAVAHKMGRRYIGIE-QMDYIKDITVERLKKV-----IEGEQGGISKAVN 270

Query: 287 RVAFNLLVERGLIQPGQILTNA 308
                  V   L++  Q L N 
Sbjct: 271 WQGGGSFVYCELLEDAQYLVNR 292


>gi|160901891|ref|YP_001567472.1| DNA methylase N-4/N-6 domain-containing protein [Petrotoga mobilis
           SJ95]
 gi|160359535|gb|ABX31149.1| DNA methylase N-4/N-6 domain protein [Petrotoga mobilis SJ95]
          Length = 338

 Score = 82.7 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 59/289 (20%), Positives = 101/289 (34%), Gaps = 55/289 (19%)

Query: 24  IKGNSISVLEKLP-AKSVDLIFADPPYNLQLNGQLYR----------------------P 60
             G   S +++L     V LI   PP+ L    Q                          
Sbjct: 14  YIGKCESEIKRLKLKGKVQLILTSPPFPLNNKKQYGNLVGEDYLNWITNLAPLFSEALTD 73

Query: 61  DHSLVDAVTDSWDK---------FSSFEAYDAFTRAWLLACRRVLKPN-GTLWVIGSYHN 110
           + S+V  + ++W+K           S   +     A L  C+  +  N   L     +  
Sbjct: 74  NGSIVIEMGNAWEKDRPVQSLLHLKSLMRFVENPEANLRLCQEFICYNPARLPSPAQWVT 133

Query: 111 IFRIGTMLQNLNFWILND----------IVWRKSNPM------PNFRGRRFQNAHETLIW 154
           I RI  +    + W ++           I+   S  M        +   +  + H     
Sbjct: 134 IERIRAIDSFTHVWWMSKTDYPKADNRKILRPYSKSMKKLLEKGKYNSGKRPSEHVISEK 193

Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE------RLRNKDGEKLHPTQK 208
           +         + N   LK  +E  ++R  + +   S ++      +   K     HP + 
Sbjct: 194 SFLKDNKGSISHNVLELKQIDETKELRLPYSMLSISNTKSNDYFTKTCKKRNIIPHPARM 253

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           P  L S  +   T  GD++LDPF GS T+G  A+KL+R +I IE  ++Y
Sbjct: 254 PLELASFFIEFLTDEGDLVLDPFGGSNTTGFCAEKLKRKWISIEANEEY 302


>gi|125973034|ref|YP_001036944.1| DNA methylase N-4/N-6 [Clostridium thermocellum ATCC 27405]
 gi|125713259|gb|ABN51751.1| DNA methylase N-4/N-6 [Clostridium thermocellum ATCC 27405]
          Length = 371

 Score = 82.7 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 72/236 (30%), Gaps = 51/236 (21%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           +   S+DL   DPP                       WD+ S                  
Sbjct: 180 IEDGSIDLCICDPP-----------------------WDRTS-----IPICEGISRVAAD 211

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGR-RFQNAHETL 152
            L+  G+L V+    ++  I   L  N        +        P    R + Q+    +
Sbjct: 212 KLRDGGSLLVLTGGSHLPDIINALSANKRLRYHWLLTCPLPQGSPASVSRLKIQSKVRFV 271

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
           +W            +Y     ++                     +   +  H    PE L
Sbjct: 272 LWYVKGTYDGDIVSDYINRPNSS---------------------SATDKTYHEWGAPEEL 310

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +S ++   + PGD + D   G GT+   A  L R FIG ++ ++ +    +R+  +
Sbjct: 311 ISELIERFSNPGDTVADWTVGGGTTAVCAVLLGRKFIGSDVDENAVKTTLRRVRQL 366


>gi|227875281|ref|ZP_03993423.1| possible DNA restriction-modification system, DNA methylase
           [Mobiluncus mulieris ATCC 35243]
 gi|227844186|gb|EEJ54353.1| possible DNA restriction-modification system, DNA methylase
           [Mobiluncus mulieris ATCC 35243]
          Length = 290

 Score = 82.7 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IAT 262
             T KPE LL RI+   + PGDI+LD F GSGT+ AVA+K+ R ++  E+  D  +    
Sbjct: 4   FTTPKPERLLERIIHIGSNPGDIVLDCFAGSGTTAAVAQKMGRRWVTCELVADTFERFTK 63

Query: 263 KRIASVQPLGNIELTVLTGK 282
            R+  V    +      T K
Sbjct: 64  PRLMKVINDQDPGGVTYTKK 83


>gi|145632421|ref|ZP_01788156.1| twin-argninine leader-binding protein DmsD [Haemophilus influenzae
           3655]
 gi|115289034|gb|ABI85525.1| M.Hin1056ModP-7B [Haemophilus influenzae]
 gi|144987328|gb|EDJ93858.1| twin-argninine leader-binding protein DmsD [Haemophilus influenzae
           3655]
          Length = 687

 Score = 82.7 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 38/78 (48%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 193 ERLRNKDGEKLHPT-QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
            +    +G    PT +KPEALL RI+  +TK GDIILD   GSGT+ AVA K+ R +IGI
Sbjct: 473 FQNTQNEGGVSFPTGKKPEALLRRIIDMTTKEGDIILDYHLGSGTTAAVAHKMNRQYIGI 532

Query: 252 EMKQDYID-IATKRIASV 268
           E + DYI+ +A +R+  V
Sbjct: 533 E-QMDYIETLAVERLKKV 549



 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 78/202 (38%), Gaps = 32/202 (15%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       + LI+ DPPYN   +   Y              DKF S
Sbjct: 203 NLIIKGNNLIALHSLAKQFKGKIKLIYIDPPYNTGEDSFKY-------------NDKF-S 248

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
              +  F +  L   + +L  +G ++V   Y+    +  +L  +  +  ++ V   +   
Sbjct: 249 HSTWLTFMKNRLEIAKTLLADDGVIFVHCDYNEDGYLRVLLDEI--FTEDNFVANIAIRS 306

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
            +  G + Q+  +T++          Y  N       N    ++  W     +    L +
Sbjct: 307 NSISGNKTQHKEKTIL--KNKDTILVYKKN---SLKINPQYTIKQKWDTHYNAI---LIS 358

Query: 198 KDGEKLHPTQKPEALLSRILVS 219
           +DGE      KP+ LL  ++ +
Sbjct: 359 EDGE-----LKPKKLLDHLIEN 375


>gi|270265278|ref|ZP_06193539.1| hypothetical protein SOD_m00100 [Serratia odorifera 4Rx13]
 gi|270040682|gb|EFA13785.1| hypothetical protein SOD_m00100 [Serratia odorifera 4Rx13]
          Length = 342

 Score = 82.7 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 17/123 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  ++ + ++ LP  S+DLI  DPPY                   +  WD ++ +   
Sbjct: 6   RLINADTTAFIKTLPDNSIDLIATDPPYF---------------RVKSCDWDNQWENEAE 50

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y A+  A L+   RVLKPNG+L++            +++   F +L+ IVW K +     
Sbjct: 51  YLAWLDALLVEFWRVLKPNGSLYMFCGSRLASDTELLVRQ-RFDVLSHIVWAKPSGAWKR 109

Query: 141 RGR 143
           + +
Sbjct: 110 QHK 112



 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 41/80 (51%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P                HP +KP  ++  I+ +S++PG+++ D F GSG++   A KL 
Sbjct: 259 VPYTDVWTYSPVAFYAGKHPCEKPAEMMEHIISASSRPGEVVADFFMGSGSTIKAAIKLG 318

Query: 246 RSFIGIEMKQDYIDIATKRI 265
           R  +G+E++ D  +   + I
Sbjct: 319 RIGLGVELEPDRFEQTQREI 338


>gi|218960801|ref|YP_001740576.1| putative Site-specific DNA-methyltransferase
           (cytosine-N(4)-specific) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729458|emb|CAO80369.1| putative Site-specific DNA-methyltransferase
           (cytosine-N(4)-specific) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 300

 Score = 82.7 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 53/112 (47%), Gaps = 3/112 (2%)

Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIP---ICSGSERLRNKDGEKLHPTQKPEALL 213
                K          +++ +     +WL     +       R+   + +HP   P +L 
Sbjct: 10  KEELKKNRYTRLCNCPSSHINCMTAKEWLTSQLGVWQFIYEKRDIRDKNIHPATFPISLA 69

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
            +++   +  G++++DPF GSGT+   A+ L R+ +G ++K++YI++   R+
Sbjct: 70  KKVISLFSHEGELVVDPFVGSGTTLVSAQDLNRNCVGFDLKKEYIELCHNRL 121



 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 58/181 (32%), Gaps = 31/181 (17%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP-------------AKSVDLIFADPPY 49
            +N +  +  +  I    +++I+ N+ +  +++P              +S+ LI   PPY
Sbjct: 101 NRNCVGFDLKKEYIELCHNRLIQQNAFNSCKQIPIEDDARNINQYLSDQSITLILTSPPY 160

Query: 50  ---------NLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAYDAFTRAWLLACRRVLKPN 99
                    N     +     + +     D  D    S E +              LK  
Sbjct: 161 SNLLNRERKNKSRRDRDNGQLNKIEQYSQDERDLGTYSVEKWTLAIGDIFENLLPSLKYK 220

Query: 100 GTL--------WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
           G          W          +   L+   F + N I+W ++N + N     + + + T
Sbjct: 221 GHCVINVPDFWWENKRITLHISLTEELRKRGFELRNIIIWDRTNIVNNIGIFGWPSNYIT 280

Query: 152 L 152
           +
Sbjct: 281 M 281


>gi|119508956|ref|ZP_01628108.1| putative type II DNA modification enzyme (methyltransferase)
           [Nodularia spumigena CCY9414]
 gi|119466485|gb|EAW47370.1| putative type II DNA modification enzyme (methyltransferase)
           [Nodularia spumigena CCY9414]
          Length = 437

 Score = 82.7 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 3/115 (2%)

Query: 187 PICSGSERLRNKDGE-KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
            I    +   N++ +   +PT+K    + RI+++S+ PGD++LD F GSGT+ AVA++L 
Sbjct: 291 DIWLNFKDAHNQNIKITGYPTEKNLDFIKRIILASSNPGDLVLDAFAGSGTTVAVAEELG 350

Query: 246 RSFIGIEMKQDYIDIATKRI-ASVQPLGNIELTVLTGK-RTEPRVAFNLLVERGL 298
           R +I I+     I    +R+    + +G+        K   +  +  N ++  GL
Sbjct: 351 RKWIAIDNSSLAITTIVQRLVKGTEAMGDFVNRNNPTKYEQQSLINTNRILHTGL 405



 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 64/179 (35%), Gaps = 15/179 (8%)

Query: 21  DKIIKGNSISVLEKLPAK-----SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           +++I G ++ VL  L         V LI+ DPPY    + +  + DH+  D +  +    
Sbjct: 54  NQLIYGENLRVLSSLIKNDAVVGKVGLIYIDPPYATGSSFESRKRDHAYHDIMEGA---- 109

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--ILNDIVWRK 133
                Y  F R  L+  R +L   G+++V    +    +  ++  +       N I  +K
Sbjct: 110 ----EYLEFLRQRLILLRELLSEEGSIYVHLDQNMACAVKIIMDEIFGTKNFRNWITRKK 165

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
            NP    R +    A   L +           F+      A ++ Q   +    I    
Sbjct: 166 CNPKNYTRNQYGNIADYILFYTKTENYVWNQQFDPWTENTAKKEYQYVEERTGRIYKKV 224


>gi|315655129|ref|ZP_07908031.1| type III restriction/modification enzyme [Mobiluncus curtisii ATCC
           51333]
 gi|315490610|gb|EFU80233.1| type III restriction/modification enzyme [Mobiluncus curtisii ATCC
           51333]
          Length = 677

 Score = 82.7 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 3/74 (4%)

Query: 197 NKDGEKLHPT-QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
            ++G    P  +KPE+L+ RIL+ +T+PGDI+ D F GSGT+ AVA K+ R +IG+E + 
Sbjct: 480 TREGNVAFPNGKKPESLIERILLLTTQPGDIVCDFFLGSGTTAAVAHKMGRRYIGVE-QM 538

Query: 256 DYI-DIATKRIASV 268
           DY+  +   R+  V
Sbjct: 539 DYVSTVTIPRLQKV 552



 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 14/85 (16%)

Query: 37  AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
              V  I+ DPPYN   +   Y              D+F +   +  F +  L   R++L
Sbjct: 192 EGQVKCIYIDPPYNTGTDSFGY-------------NDRF-NHSTWLTFMKNRLGLARQLL 237

Query: 97  KPNGTLWVIGSYHNIFRIGTMLQNL 121
           + +G ++V    +    +  ++  +
Sbjct: 238 RADGFIFVQSDDNEQAYLKVLMDEI 262


>gi|290474297|ref|YP_003467174.1| hypothetical protein XBJ1_1254 [Xenorhabdus bovienii SS-2004]
 gi|289173607|emb|CBJ80387.1| conserved hypothetical protein [Xenorhabdus bovienii SS-2004]
          Length = 345

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 71/190 (37%), Gaps = 22/190 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
            ++  +S+  ++ LP   +DLI  DPPY                     SWD ++    A
Sbjct: 7   TLVNDDSLKFIKTLPDNCIDLIATDPPYF---------------RVKACSWDNQWEDVTA 51

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y A+    L    RVLKPNG+L++            +++   F +LN I+W K +     
Sbjct: 52  YLAWLDELLAEFWRVLKPNGSLYMFCGSRLAADTELLVRE-RFNVLNQIIWAKPSGPWRR 110

Query: 141 RG----RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           +     R +  A E +I+A           +    +   +  Q     L+    GS +  
Sbjct: 111 QNKESLRMYFPATERIIFAEHYQGPYHPKGDGYYKQC-QDLKQSVFKPLVDYFRGSRKAL 169

Query: 197 NKDGEKLHPT 206
               + +H  
Sbjct: 170 GVTAKAIHAA 179



 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 42/80 (52%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P     +    +     HP +KP  L++ I+ SS++ GD++ D F GSG +   A KL 
Sbjct: 260 VPYTDVWQFAPVQYYPGKHPCEKPADLMTHIIQSSSREGDLVADFFMGSGATLKTALKLN 319

Query: 246 RSFIGIEMKQDYIDIATKRI 265
           R  +G+E++++      + I
Sbjct: 320 RRVLGVELEEERFKQTIQEI 339


>gi|217034539|ref|ZP_03439949.1| hypothetical protein HP9810_897g24 [Helicobacter pylori 98-10]
 gi|216943020|gb|EEC22501.1| hypothetical protein HP9810_897g24 [Helicobacter pylori 98-10]
          Length = 637

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 45/63 (71%), Gaps = 2/63 (3%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRI 265
           +KPE L+ RIL  +T+  D++LD F GSGT+ AVA K++R +IGIE + DYI+ I  +R+
Sbjct: 456 KKPEQLIYRILDMATQENDLVLDFFAGSGTTCAVAHKMKRRYIGIE-QMDYIETITKERL 514

Query: 266 ASV 268
             V
Sbjct: 515 KKV 517



 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 67/198 (33%), Gaps = 24/198 (12%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            + +IKGN++  L  L    AK V  I+ DPPYN   +   Y              D F 
Sbjct: 164 TNYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNY-------------NDNF- 209

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN--LNFWILNDIVWRKS 134
           +  ++  F +  L   R  L  +G ++V    +    +  ++    L    +N I    S
Sbjct: 210 NHSSWLVFMKNRLEIAREFLSDDGVIFVQCDDNEQAYLKVLMDEIFLRENFVNCIAILSS 269

Query: 135 NPMPNFRGRRFQN---AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
            P       R +      + L+  + +         Y      +    +  D        
Sbjct: 270 TPSGVKTAHRNKTIIKTKDYLLVYAKNSLLIQLKPQYKEATTWDTHFNLYFDKENNRVFS 329

Query: 192 SERLRNKDG--EKLHPTQ 207
              +  ++G  EKL  TQ
Sbjct: 330 LNHILRQNGLYEKLKATQ 347


>gi|9630519|ref|NP_046948.1| gp52 [Enterobacteria phage N15]
 gi|3192738|gb|AAC19091.1| gp52 [Enterobacteria phage N15]
          Length = 284

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 42/71 (59%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P     E    +     HP +KP A++  I+ SS++PGD++ D F GSG++   A KL 
Sbjct: 196 VPYTDVWEFPPVQYYPGKHPCEKPAAMMEHIIRSSSRPGDVVADFFMGSGSTIKEALKLG 255

Query: 246 RSFIGIEMKQD 256
           R  IG+E++++
Sbjct: 256 RKAIGVEIEEE 266


>gi|145634213|ref|ZP_01789924.1| twin-argninine leader-binding protein DmsD [Haemophilus influenzae
           PittAA]
 gi|115289038|gb|ABI85528.1| M.Hin1056ModP-3 [Haemophilus influenzae]
 gi|145268657|gb|EDK08650.1| twin-argninine leader-binding protein DmsD [Haemophilus influenzae
           PittAA]
          Length = 681

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRI 265
           +KPE L+ RI+  +T   DIILD   GSGT+ AVA K+ R +IGIE + DYI+ +A +R+
Sbjct: 482 KKPEKLIKRIIELTTNENDIILDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIETLAVERL 540

Query: 266 ASV 268
             V
Sbjct: 541 KKV 543



 Score = 66.2 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 21/149 (14%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       + LI+ DPPYN   +G  Y              DKF +
Sbjct: 207 NLIIKGNNLIALHSLAKQFKGKIKLIYIDPPYNTGNDGFKY-------------NDKF-N 252

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS--- 134
              +  F +  L   + +L  +G ++V    +    +  ++  L       +    +   
Sbjct: 253 HSTWLTFMKNRLEIAKTLLADDGVIFVQCDDNEQAYLKILMDELFHHRETIVALTSTASG 312

Query: 135 -NPMPNFRGRRFQNAHETLIWASPSPKAK 162
            N +   RG +     E +++ S SPK +
Sbjct: 313 VNAVNVKRGEQMFKLKEYILFYSKSPKFR 341


>gi|86149055|ref|ZP_01067287.1| type II dna modification enzyme [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|85840413|gb|EAQ57670.1| type II dna modification enzyme [Campylobacter jejuni subsp. jejuni
           CF93-6]
          Length = 822

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 1/107 (0%)

Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
           K Y  +Y  + +  +   +  D+++   + +E   N +  K+  T KPE LL RI    +
Sbjct: 586 KVYYKHYIDIASNLKPSSIWYDFVLNADATNEIKLNFE-NKIFDTPKPEKLLKRICDIGS 644

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
               ++LD F GSGT+ A A KL+R ++G+EM + +  +   R+  V
Sbjct: 645 NQNSLVLDFFVGSGTTIATAHKLKRKWLGVEMGEHFYKVIIPRMKKV 691



 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 71/170 (41%), Gaps = 20/170 (11%)

Query: 1   MSQKNSLAINENQNSIFEWKD-KIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQ 56
           +S++N   + ++  ++ E  + +++K ++   L  L  K    +DLI+ DPPYN   +G 
Sbjct: 355 LSEENYYKLLQSFENLDEILNGELVKADNFQALNSLMPKYQGKIDLIYIDPPYNTGNDGF 414

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
           +Y              DKF +  ++ A  +  L   +  LK +G++++    +   R+  
Sbjct: 415 VYT-------------DKF-NHSSWLAMMKNRLDLAKEFLKNSGSIFISIDDNEQARLKI 460

Query: 117 MLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
           +   +      + +++WRK     N             I+A      K Y
Sbjct: 461 LCDEVFGEENFVANVIWRKRAGGGNDSNHIAVEQEYINIYAKNIEHLKTY 510


>gi|306819881|ref|ZP_07453535.1| adenine specific DNA methylase Mod [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304552128|gb|EFM40065.1| adenine specific DNA methylase Mod [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 523

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 1/118 (0%)

Query: 152 LIWASPSPKAKGYT-FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
           + +         Y  F  D             D +       + ++  D   +  T KPE
Sbjct: 247 IWFGDKGSNIPRYKRFLTDVKDGFVPTTLWFRDEVGDNQEAKKEVKQIDSVSVFGTPKPE 306

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            L+ R+L  ++  GD++LD F GSGT+ AVA K+ R +IGIEM +        R+  V
Sbjct: 307 RLIERVLTLASDKGDLVLDSFLGSGTTAAVAHKMNRKYIGIEMGEHAYTHCKLRLDKV 364



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 68/197 (34%), Gaps = 18/197 (9%)

Query: 17  FEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
            + ++ II G+++  L+ L +K    V  I+ DPPYN                +  + +D
Sbjct: 36  PDTENMIIHGDNLLALKSLESKYSGKVKCIYIDPPYNTG--------------SAFEHYD 81

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWR 132
                  + +  +  L   R +L  +G++W+         +  +   +       +    
Sbjct: 82  DNLEHSTWLSLIKPRLEILRNLLSDDGSIWISIDDDEGHYLKVLCDEIFGRNNFVNTCIW 141

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
                     R F + H+ ++  + + ++        + ++        +D      SG 
Sbjct: 142 HKKHTRANDARWFSDNHDFILVYAKNKESWKPNLLPRSDESRKGYTNPDNDPRGVWASGP 201

Query: 193 ERLRNKDGEKLHPTQKP 209
              +  + + ++P   P
Sbjct: 202 CHAKTPNEKDIYPITTP 218


>gi|13540956|ref|NP_110644.1| adenine specific DNA methylase [Thermoplasma volcanium GSS1]
 gi|14324341|dbj|BAB59269.1| TVG0134727 [Thermoplasma volcanium GSS1]
          Length = 348

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 9/91 (9%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           + TQKPEALL RI+ +S+ P  I+ D F GSGT GAVA+KL R +I  ++ +    I  K
Sbjct: 11  YVTQKPEALLKRIIEASSLPDSIVADFFAGSGTLGAVAEKLGRKWIMCDVGKPACMIMRK 70

Query: 264 RIASV-------QPLGNIELTVLTGKRTEPR 287
           R++ +       Q +G+ +      KR++ R
Sbjct: 71  RLSDLNARPFLYQSIGDYQKEQF--KRSQFR 99


>gi|56476791|ref|YP_158380.1| adenine specific DNA methylase MOD [Aromatoleum aromaticum EbN1]
 gi|56312834|emb|CAI07479.1| Adenine specific DNA methylase MOD [Aromatoleum aromaticum EbN1]
          Length = 601

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 45/77 (58%)

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           S  L N+ G      +KPEAL+ R L  ST  GDI+LD F GSGT+G+VA K+ R +I +
Sbjct: 330 SNNLHNEGGVSFPNGKKPEALIKRCLELSTTIGDIVLDSFAGSGTTGSVAHKMGRRWIMV 389

Query: 252 EMKQDYIDIATKRIASV 268
           E+ +        R+ +V
Sbjct: 390 ELGEHCHTHIIPRLKAV 406



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 58/157 (36%), Gaps = 22/157 (14%)

Query: 12  NQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
           + N IF+  +++I G+++  L+ L    +  V  I+ DPP+N Q                
Sbjct: 40  SDNDIFD--NRLIFGDNLLALKALEQEFSGKVKCIYIDPPFNTQ--------------QA 83

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL---NFWI 125
            + +D       +    R    + RR+L  +GTL+V    + +  +  +L  +      I
Sbjct: 84  FEHYDDGYEHSIWLGLIRDRAESLRRLLSDDGTLFVHIDDNELGYLIALLDEVFGRRNRI 143

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
                 + S   P          +  +++ + +    
Sbjct: 144 GVVTFKQSSASGPKAINPGLVTTNNYILYYAKNKDVW 180


>gi|315653151|ref|ZP_07906076.1| adenine specific DNA methylase Mod [Lactobacillus iners ATCC 55195]
 gi|315489516|gb|EFU79153.1| adenine specific DNA methylase Mod [Lactobacillus iners ATCC 55195]
          Length = 638

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
              D +     G   ++      +  T K E L+ RIL  +T  GD++ D F GSGT+ A
Sbjct: 426 WTRDEVGDSQEGKREIKALHFNSIFDTPKQERLIERILTLATNEGDLVFDSFVGSGTTAA 485

Query: 240 VAKKLRRSFIGIEMKQDYI-DIATKRIASV 268
           VA K+ R +IG+E + DYI DI  +R+  V
Sbjct: 486 VAHKMGRRYIGVE-QMDYIQDITVERLKKV 514



 Score = 59.2 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 73/188 (38%), Gaps = 20/188 (10%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
           E   ++ +  + IIKGN++  L  L       V  I+ DPPYN                +
Sbjct: 179 ETGITLNDDDNLIIKGNNLIALASLLKRYEGKVKCIYIDPPYNTG--------------S 224

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWI 125
            + +++   +   +  F +  L   RR+L+ +GT+W+    H    +  +  ++      
Sbjct: 225 DSFNYNDSFNHSTWLTFMKNRLELARRLLREDGTIWISCDDHESHYLKVLTDDIFNRDNF 284

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
           +++IVW+++   P    +    +H+ ++  + +               AN   +   +  
Sbjct: 285 IDEIVWQRAYA-PVNLKKTLSRSHDIILVYAKNLDPNFTLNKLPRSDEANARYKNPDNDP 343

Query: 186 IPICSGSE 193
             +   S+
Sbjct: 344 RGVWKSSD 351


>gi|333011769|gb|EGK31175.1| DNA methylase domain protein [Shigella flexneri K-227]
          Length = 141

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 55/149 (36%), Gaps = 16/149 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                       RVLK +  +     ++ + R  +  +N  F ++  +V+ K+       
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNYTSKAAY 107

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA 170
                N   T    +     K       A
Sbjct: 108 VGYRTNV-PTSWQKAVHVCHKTRCRTCWA 135


>gi|309379190|emb|CBX22147.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 677

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 71/177 (40%), Gaps = 24/177 (13%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY 58
             K   A  EN  S    ++ +I G+++ VL+ L      SV +I+ DPPYN  L+G +Y
Sbjct: 132 EDKTHNAKPENAGS----QNLLICGDNLEVLKHLKNAYTNSVKMIYIDPPYNTGLDGFVY 187

Query: 59  RPDHSLVDA---------------VTDSWDKFS-SFEAYDAFTRAWLLACRRVLKPNGTL 102
           + D     A               + D  DK S S  A+  F    L   R +L+ +G +
Sbjct: 188 QDDRKFTPAELARLANIDEEEAARILDFTDKGSNSHSAWLTFMYPRLYVARELLREDGVI 247

Query: 103 WVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
           ++    +   ++  +   +       + +  +    P    + F   H+ LI  + +
Sbjct: 248 FISIDDNEAAQLKLLCDEVFGEGNFVEQIIWEKKFSPQNDAKYFSENHDYLICYAKN 304



 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 45/127 (35%), Gaps = 31/127 (24%)

Query: 186 IPICSGSERLRNK----------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
           I I   +E   N+          DG+    T KP  L+ + L  +T P D+ILD F GSG
Sbjct: 410 ISIWKFNEVGHNQEASQELRKLFDGDSYFDTPKPIRLIVQTLRLTTNPDDLILDFFAGSG 469

Query: 236 TSGAVAKKLR-------RSFIGIEM--------------KQDYIDIATKRIASVQPLGNI 274
           T+     +L        R +I +++                   DI   RI         
Sbjct: 470 TTAHAVMQLNAEEQNGSRRYICVQLPEKTGEKSEARKAGYPTIFDITKARIEKASAKIRA 529

Query: 275 ELTVLTG 281
           E    TG
Sbjct: 530 EHPDYTG 536


>gi|167896122|ref|ZP_02483524.1| DNA methylase [Burkholderia pseudomallei 7894]
 gi|217424690|ref|ZP_03456187.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei 576]
 gi|217392146|gb|EEC32171.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei 576]
          Length = 160

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 66/180 (36%), Gaps = 24/180 (13%)

Query: 96  LKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
           +KP G L     +  +  +  ++Q     +    VW K+      R   F    E ++WA
Sbjct: 1   MKPGGLLVSFIDWRQLPTLTDVVQAAGLILRGVAVWDKTLGRMRLRRGGFAQQAEFVVWA 60

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
           S         +                   +P+             K H T+KP   ++R
Sbjct: 61  SRGAMRGCGVYLPGVFPC-----------RLPLP------------KQHVTEKPLD-IAR 96

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
            +V     G ++ D F GSGT  A A++    ++G E  Q Y  I++ R+ +      ++
Sbjct: 97  EVVRLVPAGVVVCDLFAGSGTFLAAAREAGLHWVGSETNQAYHAISSARLDATTDDSGVQ 156


>gi|327253801|gb|EGE65430.1| DNA methylase [Escherichia coli STEC_7v]
          Length = 162

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 17/131 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++I  + +  ++ LP  SVDLI  DPPY                    + WD ++   + 
Sbjct: 11  ELINADFLEFIQTLPENSVDLIVTDPPYF---------------KVKPEGWDNQWKGDDD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y  +    L     VLKP G+L++   +     I  M++   F +LN I+W K +   N 
Sbjct: 56  YLKWLDQCLAQFWWVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNHIIWAKPSGRWNG 114

Query: 141 RGRRFQNAHET 151
             +    A+  
Sbjct: 115 CNKESLRAYFP 125


>gi|194173088|ref|YP_002003732.1| putative adenine methyltransferase [Escherichia phage rv5]
 gi|114796126|gb|ABI79300.1| putative adenine methyltransferase [Escherichia phage rv5]
          Length = 441

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 3/86 (3%)

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
            W     +G   + N+ G      +KPEALL RIL   T+ GD++LD F GSGT+ AVA 
Sbjct: 321 VWTDISWNG---IANEGGVSFKNGKKPEALLKRILEMCTREGDLVLDSFGGSGTTAAVAH 377

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASV 268
           K++R +I IE+          R+  V
Sbjct: 378 KMKRRWILIELGDHCHTHIIPRLQKV 403



 Score = 63.5 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 56/313 (17%), Positives = 107/313 (34%), Gaps = 49/313 (15%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           +N IF+  +K+I G+++  L+ L    A  V  ++ DPP+N                   
Sbjct: 39  ENDIFD--NKLIFGDNLLALKALEQEYAGKVKCVYIDPPFNTGR--------------AF 82

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILN 127
           + +D       +    R  L   R +L  +G ++V      +  +  ++  +      LN
Sbjct: 83  EHYDDSLEHSVWLGLMRDRLEIIRNLLSDDGVIFVHLDDCEMAYLKVLMDEIFGRANQLN 142

Query: 128 DIVWRKSNPMPNFRGRR--FQNAHETLIWAS--------PSPKAKGYTFNYDALKAANED 177
            I    ++P          F  A+  L++A              KGY   Y+      +D
Sbjct: 143 TISMTTNSPSGFKATGATVFSTANFLLVYAKDRTQKPLNKIYIPKGYDTGYNKYLLNPDD 202

Query: 178 VQMRSDWLI---PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
                 W          +     K+ +K  P    + L    + ++ +    +     G 
Sbjct: 203 HYKNWTWCGIADAFAKANGYKDAKEAKKKLPDTFDDELAQFAIDNAERVFQSVA---IGG 259

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLV 294
           G       K++R    IE  +   D        V P  ++E   +   R     +  LL 
Sbjct: 260 G------AKIKRKET-IEKSKKDRDKVY-----VHPNEDVEGFYIANGRQMVFYSNRLLE 307

Query: 295 ERGLIQPGQILTN 307
             G +QP +++T+
Sbjct: 308 IDGEMQPAELITD 320


>gi|331266269|ref|YP_004325899.1| putative type III restriction/modification system modification
           methylase [Streptococcus oralis Uo5]
 gi|326682941|emb|CBZ00558.1| putative type III restriction/modification system modification
           methylase [Streptococcus oralis Uo5]
          Length = 663

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 3/123 (2%)

Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
           +  +T+ +       +        + A +   +   D+   I   +  + N+ G +L   
Sbjct: 420 SKKKTIFYYITEFNRETKQPRLQVIFADSNIFKNPCDFWQDI-KTTGAIANEGGVQLPNG 478

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI-DIATKRI 265
           +KPE LL RI+  STK  D++LD   GSGT+ AVA K+ R +IGIE + DYI ++   R+
Sbjct: 479 KKPEKLLQRIIKMSTKESDVVLDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIEELVVNRL 537

Query: 266 ASV 268
            +V
Sbjct: 538 KNV 540



 Score = 55.4 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 67/185 (36%), Gaps = 23/185 (12%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
            N   I +  + IIKGN++  L  L    A  V LI+ D PYN   +   Y         
Sbjct: 160 HNVEEIKDTDNLIIKGNNLIALHSLKKRFAGKVKLIYIDVPYNTGNDSFRY--------- 210

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWI 125
                +   +  ++  F +  L+  +++L  +G ++V    +    +  M+  +      
Sbjct: 211 -----NDSFNHSSWLTFMKNRLIISKKLLSIDGLIFVQCDDNEQAYLKVMMDEIFGSENF 265

Query: 126 LNDIVWRKSNP----MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
           +N I  + S      M + + R  +     L++     +       Y      NE+    
Sbjct: 266 INCIAVKMSEASGVKMNHAKSRMPKLKEYILLYKKEGFREFNEIDKYRVDTWDNENNIFL 325

Query: 182 SDWLI 186
            ++ I
Sbjct: 326 ENFSI 330


>gi|265753968|ref|ZP_06089323.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Bacteroides
           sp. 3_1_33FAA]
 gi|263235682|gb|EEZ21206.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Bacteroides
           sp. 3_1_33FAA]
          Length = 158

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 37/82 (45%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
            P      +    +G+ +H  QKP ALL  ++ + TK GD +LD   GS ++        
Sbjct: 72  YPRSVIYFKTAESEGKTIHVNQKPIALLEYLIKTYTKEGDTVLDFASGSMSTAIACIYTN 131

Query: 246 RSFIGIEMKQDYIDIATKRIAS 267
           R  I IE  + Y     KR+ +
Sbjct: 132 RKCICIEKDETYFSQGEKRVRN 153


>gi|318065865|ref|YP_004123900.1| gp78 [Mycobacterium phage Wee]
 gi|315420948|gb|ADU15949.1| gp78 [Mycobacterium phage Wee]
          Length = 557

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 8/120 (6%)

Query: 156 SPSPKAKGYTFNYDALKAANED--------VQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
            P   A G+ +   A  A  +D           R +   P       +     +  H T 
Sbjct: 425 KPRTGANGHGWGMTATGAEYDDEGGASRFFPVFRYEAKAPGAERPSYVNEDGAKVAHNTV 484

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           KP  L+  ++   T P  ++LDPF GSGT+        +  I IE + DY+ +   R++ 
Sbjct: 485 KPLDLMRWLVRLVTPPNGVVLDPFAGSGTTAEACIHEHKRCITIEREADYLPLIVARLSK 544



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 27/61 (44%)

Query: 12 NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
          N     + +  +  G+ + V+ KLP  SVD +  DPPYNL    + +       DA    
Sbjct: 2  NNPYYQDDQVTLYHGDCLDVIVKLPDNSVDAVVTDPPYNLSFMAKTWDALDGREDAGFAY 61

Query: 72 W 72
          W
Sbjct: 62 W 62



 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 27/66 (40%)

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           D   S   +  + R W   C RVLKP G L   G      R+   +++  F + + I W 
Sbjct: 196 DIAWSGNEFQDWCRLWAAECLRVLKPGGHLLAFGGTRTWHRLAAAIEDAGFELRDSIAWL 255

Query: 133 KSNPMP 138
             +  P
Sbjct: 256 YGSGFP 261


>gi|320537594|ref|ZP_08037531.1| DNA (cytosine-5-)-methyltransferase [Treponema phagedenis F0421]
 gi|320145548|gb|EFW37227.1| DNA (cytosine-5-)-methyltransferase [Treponema phagedenis F0421]
          Length = 384

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 41/67 (61%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +PT+K  +LL  ++ SS+    II D F GSGT+   A++L R +IGI+  ++ I I  +
Sbjct: 292 YPTEKNLSLLKHLIESSSNEDSIIFDFFCGSGTTLVAAQELERKWIGIDKSEEAIKITKQ 351

Query: 264 RIASVQP 270
           +++   P
Sbjct: 352 KLSQCSP 358



 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 68/175 (38%), Gaps = 16/175 (9%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP-----AKSVDLIFADPPYNLQLNG 55
           M    S +   N+ +     + +I+G++ S ++ L         VD I+ DPP+      
Sbjct: 17  MQNNYSFSAPWNKKN-----NLLIQGDNFSSMQILLQEYNLEGRVDFIYIDPPFATNSVF 71

Query: 56  QLYRPDHSLVDAVTDSWDKFSS---FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
            +     S V    +    +S       +  F R  L+   ++L  NG++++   Y    
Sbjct: 72  AIGDDRTSTVSPGGNDKIAYSDKLVGADFLEFLRERLIPAHKMLSKNGSIYLHIDYKIGH 131

Query: 113 RIGTMLQNLNFW--ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
            +  ++  +       NDI   K NP  NF  R + N  + +++ S +     + 
Sbjct: 132 YVKIIMDEIFGIENFKNDITRIKCNP-KNFSRRAYGNIKDLILFYSKTKNNIWHN 185


>gi|304387298|ref|ZP_07369491.1| type III restriction/modification enzyme [Neisseria meningitidis
           ATCC 13091]
 gi|304338681|gb|EFM04798.1| type III restriction/modification enzyme [Neisseria meningitidis
           ATCC 13091]
          Length = 457

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 2/70 (2%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K+  T KPE+LL  ++  +T   DI+LD   GSGT+ AVA K+ R +IGIE + DYI+
Sbjct: 251 GSKVFTTPKPESLLQYLIQIATSESDIVLDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIE 309

Query: 260 -IATKRIASV 268
            +A +R+  V
Sbjct: 310 TLAVERLKKV 319



 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 47/142 (33%), Gaps = 14/142 (9%)

Query: 42  LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
           LI+ DPPYN   +G  Y              DKF +   +  F +  L   + +L  +G+
Sbjct: 3   LIYIDPPYNTGNDGFKY-------------NDKF-NHSTWLTFMKNRLEIAKELLMEDGS 48

Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
           ++V    +    +  ++  +         +           ++     E ++  S + K 
Sbjct: 49  IFVSIDDNEQAYLKILMDEVFGNENFICNFIWEKKTGASDAKQIATITEFVLCYSKNFKT 108

Query: 162 KGYTFNYDALKAANEDVQMRSD 183
                N  +       +  + +
Sbjct: 109 VKLNKNTSSYDTERYKLSDKFE 130


>gi|150021564|ref|YP_001306918.1| DNA methylase N-4/N-6 domain-containing protein [Thermosipho
           melanesiensis BI429]
 gi|149794085|gb|ABR31533.1| DNA methylase N-4/N-6 domain protein [Thermosipho melanesiensis
           BI429]
          Length = 846

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 57/312 (18%), Positives = 107/312 (34%), Gaps = 66/312 (21%)

Query: 23  IIKGNSISVLEKLPA---KSVDLIFADPPYN-------------------------LQLN 54
           +IK  +   L  +     + V  I+ DPP+N                         ++L 
Sbjct: 393 LIKSENYQALNTILPKFREKVQTIYIDPPFNKEQEADYLYKVGYKDATWITMLENRVKLG 452

Query: 55  GQLYRPDHSLV---DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN----------GT 101
            ++     S+    D   + + +    + +        +   R+ K +           +
Sbjct: 453 REILNEKGSIFVRCDYNGNMYVRMILNKIFGGDNFRNEINVSRISKQDRKVKKFNTATDS 512

Query: 102 LWVIGSYHNIF---RIGTMLQNLNFWILNDIVWRKSNPMPNF-------RGRRFQNAHET 151
           L+   S  N F       + +               N +  F       +GR +    E 
Sbjct: 513 LYFYSSSDNFFFRLLFKKLFKTKGERWHAMDSQGNGNALYIFGVLLEPPKGRHWTYGQEN 572

Query: 152 LIWASPSPK----AKGYTFN-----YDALKAANEDVQMRSDWLIP------ICSGSERLR 196
           +       +     K   +N     +           ++ ++L+P      I S    + 
Sbjct: 573 IKKMEKEKRIRIKCKKCGYNHIEGVWKGCPQCGNKNDVKVEYLLPPTSEKQIDSNWTDIS 632

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                    T+  E LL R++ S++  GD+ILD F GSGT+ AVA KL+R +IG+EM + 
Sbjct: 633 GYTSNWNFSTENSEILLKRVIESTSNEGDLILDFFLGSGTTTAVAHKLKRKWIGVEMGEH 692

Query: 257 YIDIATKRIASV 268
           +  +   R+  V
Sbjct: 693 FWTVVLPRMKKV 704


>gi|309378869|emb|CBX22574.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 452

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 2/70 (2%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K+  T KPE+LL  ++  +T   DI+LD   GSGT+ AVA K+ R +IGIE + DYI+
Sbjct: 251 GSKVFTTPKPESLLQYLIQIATSESDIVLDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIE 309

Query: 260 -IATKRIASV 268
            +A +R+  V
Sbjct: 310 TLAVERLKKV 319



 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 47/142 (33%), Gaps = 14/142 (9%)

Query: 42  LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
           LI+ DPPYN   +G  Y              DKF+    +  F +  L   + +L  +G+
Sbjct: 3   LIYIDPPYNTGNDGFKY-------------NDKFNR-STWLTFMKNRLEIAKELLMEDGS 48

Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
           ++V    +    +  ++  +         +           ++     E ++  S + K 
Sbjct: 49  IFVSIDDNEQAYLKILMDEVFGNENFICNFIWEKKTGASDAKQIATITEFVLCYSKNFKT 108

Query: 162 KGYTFNYDALKAANEDVQMRSD 183
                N  +       +  + +
Sbjct: 109 VKLNKNTSSYDTERYKLSDKFE 130


>gi|78045442|ref|YP_361692.1| putative site-specific DNA-methyltransferase [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|78033946|emb|CAJ19945.1| putative site-specific DNA-methyltransferase [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 407

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 59/280 (21%), Positives = 93/280 (33%), Gaps = 40/280 (14%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQL-NGQLYRPDHSLVD-------------------AVT 69
           SV  +L  K V L    PPY L+        P H  VD                   A+ 
Sbjct: 125 SVFPRLDEKIV-LCLTSPPYPLRKPRAYGNPPIHLYVDFIVKALEPIVRNLADGGSIALN 183

Query: 70  DSWDKFS----SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF-RIGTMLQNLNFW 124
            S D F     S E Y       L    R+ K +  +W   S      R  +M +     
Sbjct: 184 LSNDIFEAGLPSRELYLERLTLALCDTYRLHKMDTLIWSNPSKPPGPVRWASMTRQQLNV 243

Query: 125 ILNDIVWRKSNPMPNFRGRR-----FQNAHETLI-----WASPSPKAKGYTFNYDALKAA 174
               I+W  +NP       R       + H+ L+               Y  +  +    
Sbjct: 244 SWEPILWLTNNPRNCVSDNRRILEPHSDRHQRLMARGGEHREAVNSDGAYRIHQGSYGRP 303

Query: 175 NEDVQMRSDWLIPICSGSERLRN----KDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
            +    R+  +        +  N    + G   H    P AL  +++   ++P D++ DP
Sbjct: 304 TDGRIARNVLMHGHRCAEAQACNHFAAEQGLAPHGAPMPLALADKLVRFLSRPDDLVADP 363

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
           F G  T+G  A++  R +I  E+  D++  A  R     P
Sbjct: 364 FGGRLTTGKAAEQNGRRWICTELIADHLHSALPRFPQAVP 403


>gi|316984192|gb|EFV63170.1| DNA methylase family protein [Neisseria meningitidis H44/76]
          Length = 457

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 2/70 (2%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G K+  T KPE+LL  ++  +T   DI+LD   GSGT+ AVA K+ R +IGIE + DYI+
Sbjct: 251 GSKVFTTPKPESLLQYLIQIATSESDIVLDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIE 309

Query: 260 -IATKRIASV 268
            +A +R+  V
Sbjct: 310 TLAVERLKKV 319



 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 47/142 (33%), Gaps = 14/142 (9%)

Query: 42  LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
           LI+ DPPYN   +G  Y              DKF +   +  F +  L   + +L  +G+
Sbjct: 3   LIYIDPPYNTGNDGFKY-------------NDKF-NHSTWLTFMKNRLEIAKELLMKDGS 48

Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
           ++V    +    +  ++  +         +           ++     E ++  S + K 
Sbjct: 49  IFVSIDDNEQAYLKILMDEVFGNENFICNFIWEKKTGASDAKQIATITEFVLCYSKNFKT 108

Query: 162 KGYTFNYDALKAANEDVQMRSD 183
                N  +       +  + +
Sbjct: 109 VKLNKNTFSYDTERYKLSDKFE 130


>gi|218961397|ref|YP_001741172.1| Modification methylase, type III R/M system [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730054|emb|CAO80966.1| Modification methylase, type III R/M system [Candidatus Cloacamonas
           acidaminovorans]
          Length = 998

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 12/186 (6%)

Query: 85  TRAWLLACRRVLKPNGTLWVI--GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           T        R L   G  W I      N+F    +  +    +L+         +   +G
Sbjct: 614 TENREKQEWRALDMEGEKWDIVPNDMINMFSPNNLKYDEKGNVLSRAKIILGKEIIPRQG 673

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           RRF N    +I    +     Y+   +      + + +  DW                  
Sbjct: 674 RRFPNQ--VIINKMENDGLLRYSSRGNPQMLKPDIIYLTDDWTGFYGYSFNWD------- 724

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
             PT+  E LL R++ S++   +I++D F GSGT+ AVA+KL R +IGIEM + +  +  
Sbjct: 725 -FPTENSEILLKRVIESTSDERNIVMDFFLGSGTTTAVAQKLGRKWIGIEMGEHFWSVVM 783

Query: 263 KRIASV 268
            R+  V
Sbjct: 784 PRMKKV 789



 Score = 40.0 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 69/184 (37%), Gaps = 25/184 (13%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
           ++L K   + +  I+ DPP+N     +    D+       DS         + +     L
Sbjct: 489 TILPKFKEQ-IQTIYIDPPFN-----KEQDADYLYNVKYKDS--------TWASLLENRL 534

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--ILNDIVWRKSNPMPNFRGRRFQN 147
              + ++K + +++V   Y+  + +  ++  + +     N+I+  KS  M    G+   +
Sbjct: 535 SLAKNIMKDSASIFVRCDYNGNWVLRPVMNYIFYEDNFRNEIIVNKSVRMKT-EGKVLLS 593

Query: 148 AHETLIWASPSPKAKGYTF--------NYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
            H+ ++    +     +           + AL    E   +  + +I + S +    ++ 
Sbjct: 594 WHDVILCYCKNSNNVFFCHITENREKQEWRALDMEGEKWDIVPNDMINMFSPNNLKYDEK 653

Query: 200 GEKL 203
           G  L
Sbjct: 654 GNVL 657


>gi|255282318|ref|ZP_05346873.1| prophage LambdaSa04, DNA methylase [Bryantella formatexigens DSM
           14469]
 gi|255267266|gb|EET60471.1| prophage LambdaSa04, DNA methylase [Bryantella formatexigens DSM
           14469]
          Length = 357

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/164 (12%), Positives = 54/164 (32%), Gaps = 16/164 (9%)

Query: 20  KDKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +++ G+S+       L      +L+  DPPYN+ +     +  +              
Sbjct: 173 RHRLVCGDSLLPETFSTLMDGKRANLVVTDPPYNVNVEETAGKIKN-----------DNM 221

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             E +  F  A  +   + ++ + +++V  +            +  F++    +W+K+  
Sbjct: 222 PDEDFYKFLFAAFVNMEQNMENDASIYVFHADSKGLIFRQAFHDAGFYLSGCCIWKKNAL 281

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           +       +Q  HE  ++         +  +         D   
Sbjct: 282 V--LGRSPYQWQHEPCLFGWKVGGKHQWYSDRKQTTIWEYDRPN 323


>gi|308234573|ref|ZP_07665310.1| DNA (cytosine-5-)-methyltransferase [Atopobium vaginae DSM 15829]
 gi|328944362|ref|ZP_08241825.1| methylase [Atopobium vaginae DSM 15829]
 gi|327491077|gb|EGF22853.1| methylase [Atopobium vaginae DSM 15829]
          Length = 655

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 2/79 (2%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           G+  + N          KPE L+  IL  S+ P D++LD   GSGT+ AVA K+ R +IG
Sbjct: 454 GNNEITNLFSRDEFDYAKPEELIRSILEISSNPTDLVLDFHLGSGTTAAVAHKMGRRYIG 513

Query: 251 IEMKQDYI-DIATKRIASV 268
           +E + DYI DI  +R+  V
Sbjct: 514 VE-QMDYIQDITVERLKKV 531



 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 57/187 (30%), Gaps = 14/187 (7%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       V  I+ DPPY    N  +             S      
Sbjct: 189 NLIIKGNNLIALASLLKRYEGKVKCIYIDPPYY--FNKTIGEDSFKYNSNFKMS------ 240

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNP 136
              +  F +  L    ++L  +G++W+      +  +  +  ++         + RK+  
Sbjct: 241 --TWLTFMKNRLELANKLLSSHGSIWIHMGEDGMHYLKVLADDVFGKEHFVGTIPRKTRD 298

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
             +          + ++  + + ++          K    D      W     +    ++
Sbjct: 299 GKSDVPFNLSQDFDWILVYTKANESDAVVGRQVERKYYETDDFPGKPWRTADLTSQRTVQ 358

Query: 197 NKDGEKL 203
            +     
Sbjct: 359 ERPNSDF 365


>gi|310766711|gb|ADP11661.1| putative DNA methylase [Erwinia sp. Ejp617]
          Length = 506

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 63/171 (36%), Gaps = 8/171 (4%)

Query: 106 GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAH------ETLIWASPSP 159
           G++           +   + +     R  +  P+    R           +  IW     
Sbjct: 192 GNWRPNNLAARNFYSKGTYSITCPSGRIIDGPPHGSYWRVSEKKFQELDKDNRIWWGKDG 251

Query: 160 KA--KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
                   F  +  +          + +       + + N    ++  T KPE L+ R+L
Sbjct: 252 NNVPAPKIFLSEVKQGVVPQTLWSYEEVGHTQEAKKEIVNIFRSEVFDTPKPERLIERVL 311

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
             ++K  D+ILD F GSGT+ AVA K+ R +IGIEM +        R+  V
Sbjct: 312 HVASKDEDLILDSFLGSGTTAAVAHKMNRRYIGIEMGEHARTHCIPRLQKV 362



 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 61/173 (35%), Gaps = 24/173 (13%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + II+G+++  L  L       V  IF DPPYN Q              +  + +D    
Sbjct: 37  NMIIQGDNLLALRALMPLYAGQVKCIFIDPPYNTQ--------------SAFEHYDDKLE 82

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSN 135
              + +     L+  R +L  +G++WV    +    +  M+  +      + +++WRK+ 
Sbjct: 83  HSQWLSMMYPRLVLLRDLLAEDGSIWVTLDDNEAHYMKVMMDEVFGRDNFIANLIWRKNY 142

Query: 136 PMPNFRGRRFQNAHETLIWA----SPSPKAKGYTFNYDALKAANEDVQMRSDW 184
             P    + F   H+ +                  +       N D   R +W
Sbjct: 143 A-PKSSAKHFSVDHDHIFVFAKNSKKWSPNPMPRSDKQNKAYKNPDNDRRGNW 194


>gi|157155781|ref|YP_001464330.1| DNA methylase [Escherichia coli E24377A]
 gi|218696572|ref|YP_002404239.1| DNA methylase N-4/N-6 [Escherichia coli 55989]
 gi|256025062|ref|ZP_05438927.1| DNA methylase N-4/N-6 [Escherichia sp. 4_1_40B]
 gi|157077811|gb|ABV17519.1| DNA methylase [Escherichia coli E24377A]
 gi|218353304|emb|CAU99280.1| DNA methylase N-4/N-6 [Escherichia coli 55989]
          Length = 542

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 7/147 (4%)

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
           +I  ++ +          Q   +       S    G+T  +     ++      + W   
Sbjct: 228 EIFPKRQDGTDGRWRWGVQKIDQEKWRIDWSKGRNGWTPYFRVYADSSSGRPPETIWFHS 287

Query: 188 ICSGSERLRNKDGEKLHPT------QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
              GS R    + +K+ PT       KPEAL+ +IL  +T  GD++LD F GSGT+GAVA
Sbjct: 288 EV-GSNRTSKAEIKKVIPTISAFDTPKPEALIKKILEIATDNGDLVLDSFAGSGTTGAVA 346

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASV 268
           +K+ R +I +E+          R+  V
Sbjct: 347 QKMGRQWIMVELGDHCRTHIVPRMKKV 373



 Score = 66.2 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 52/144 (36%), Gaps = 18/144 (12%)

Query: 18  EWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           + ++ +I G+++  L+ L    A  V  IF DPPYN                +    +D 
Sbjct: 37  DSENLLIHGDNLLALKALEQKYAGKVKCIFIDPPYNTG--------------SAFTHYDD 82

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRK 133
                 +    R  L   R +L  +G++W+    H +  +  +   +         V  +
Sbjct: 83  GLEHSLWLCLIRDRLELLRTLLSEDGSIWITIDDHEVHYLKCLCDEIFGRNNFISNVIWE 142

Query: 134 SNPMPNFRGRRFQNAHETLIWASP 157
            +  P      F + H+ ++  + 
Sbjct: 143 KSDSPRMDAAFFSSRHDHILVYAK 166


>gi|109948189|ref|YP_665417.1| type III restriction-modification system: methyltransferase
           [Helicobacter acinonychis str. Sheeba]
 gi|109715410|emb|CAK00418.1| type III restriction-modification system: methyltransferase
           [Helicobacter acinonychis str. Sheeba]
          Length = 642

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 2/89 (2%)

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           R DW          +  +        +KP+ L+  IL  ST+  D++LD F GSGT+ AV
Sbjct: 432 RGDWWGGFYKDMMNINKEANLVWKAGKKPKRLIKDILEISTQENDLVLDFFAGSGTTCAV 491

Query: 241 AKKLRRSFIGIEMKQDYID-IATKRIASV 268
           A K++R +IGIE + DYI+ I   R+  V
Sbjct: 492 AHKMKRRYIGIE-QMDYIENITKARLKKV 519



 Score = 49.6 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 50/148 (33%), Gaps = 20/148 (13%)

Query: 42  LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
            I+ DPPYN   +   Y              D F +  ++  F +  L A R  L  NG 
Sbjct: 186 CIYIDPPYNTGNDSFNY-------------NDNF-NHSSWLVFMKNRLEAAREFLSDNGV 231

Query: 102 LWVIGSYHNIFRIGTMLQNLNFW------ILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
           ++V    +    +  ++  +         +  ++   +   + + +        E ++  
Sbjct: 232 IFVQCDDNEQAYLKVLMDEVFGRENFVANLHVELSTTQGMKVASAKKGNIVKNAEYILIY 291

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSD 183
           S + +   +  +    K  +E   +  D
Sbjct: 292 SKNMENFSFIRSLYVAKEWDEHYSIYID 319


>gi|323186686|gb|EFZ72011.1| DNA methylase family protein [Escherichia coli RN587/1]
          Length = 191

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 43/83 (51%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 107 VPYTDVWTHKPVQFYPGKHPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAALALG 166

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  IG+E++ +  +   + +  +
Sbjct: 167 RRAIGVELETERFEQTVREVQDL 189


>gi|282163636|ref|YP_003356021.1| putative DNA methylase [Methanocella paludicola SANAE]
 gi|282155950|dbj|BAI61038.1| putative DNA methylase [Methanocella paludicola SANAE]
          Length = 351

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 58/182 (31%), Gaps = 4/182 (2%)

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR----KSNPMPNFRGRRF 145
                  K N ++       +  +   ML N+     ++I  R                 
Sbjct: 10  QEYYFYYKNNKSIVPCLDDKSNEKAKLMLNNIYNNYKDNIPKRFISQWDKVKLYDPNGNI 69

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
            +AH  ++           + NY   K   +       +        E     +    HP
Sbjct: 70  DSAHAIILDIDQGAYDIKNSLNYLTGKEWTKFTCSWFVFNALQKDLKEEQEICENCVDHP 129

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
                 ++   ++  TK G  ++DPF G G++    K+  R   G E+ + Y DI  KR+
Sbjct: 130 ATYSPTMIEDFILFFTKEGMKVIDPFAGIGSTLVACKRTNRIGYGTELNKKYYDIILKRV 189

Query: 266 AS 267
             
Sbjct: 190 PE 191



 Score = 39.6 bits (91), Expect = 0.81,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 52/157 (33%), Gaps = 24/157 (15%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNG-QLYRPDHSLVDAVTDSWD 73
           +K+ I   ++ ++ E    +  +   + PPY    N   +G +  R  + L    +D  +
Sbjct: 193 YKN-IYNADARNIKELYNDEQFNFCISSPPYWDVLNRSTDGFKKTREGNGLDVKYSDLSN 251

Query: 74  KFSSFEAYDAFTRA----------------WLLACRRVLKPNGTLWVIG-SYHNIFRIGT 116
              +   YD F                   +++   + +K  G L+ +            
Sbjct: 252 DLGNIADYDQFVGELTKIYLDIFDKLVKGAYIVIIVKNIKKGGKLYPLAWDLAKSLSNKY 311

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           +L++   WI  D +       P        + +  ++
Sbjct: 312 VLKDEKIWI-QDKIQLSPYGYPYSWASNILHHYCIIL 347


>gi|260580144|ref|ZP_05847974.1| twin-argninine leader-binding protein DmsD [Haemophilus influenzae
           RdAW]
 gi|260093428|gb|EEW77361.1| twin-argninine leader-binding protein DmsD [Haemophilus influenzae
           RdAW]
          Length = 763

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/63 (53%), Positives = 46/63 (73%), Gaps = 2/63 (3%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRI 265
           +KPEALL RI+  +TK GDI+LD   GSGT+ AVA K+ R +IGIE + DYI+ +A +R+
Sbjct: 569 KKPEALLRRIIDMTTKEGDIVLDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIETLAVERL 627

Query: 266 ASV 268
             V
Sbjct: 628 KKV 630



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 17/104 (16%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       V LI+ DPPYN   +G  Y              DKF +
Sbjct: 255 NLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTGNDGFKY-------------NDKF-N 300

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
              +  F +  L   + +L  +G ++V         +  ++ ++
Sbjct: 301 HSTWLTFMKNRLEIAKTLLADDGVIFVQCDDIEQAYLKILMDDI 344


>gi|284801429|ref|YP_003413294.1| site-specific DNA-methyltransferase (adenine- specific) [Listeria
           monocytogenes 08-5578]
 gi|284994571|ref|YP_003416339.1| site-specific DNA-methyltransferase (adenine- specific) [Listeria
           monocytogenes 08-5923]
 gi|284056991|gb|ADB67932.1| site-specific DNA-methyltransferase (adenine- specific) [Listeria
           monocytogenes 08-5578]
 gi|284060038|gb|ADB70977.1| site-specific DNA-methyltransferase (adenine- specific) [Listeria
           monocytogenes 08-5923]
          Length = 637

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 68/336 (20%), Positives = 112/336 (33%), Gaps = 97/336 (28%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPP---------YNLQLNGQLYRPDHS----- 63
           + IIKGN++  L  L       + LI+ DPP         YN + N   +          
Sbjct: 184 NLIIKGNNLLALHTLKDMYSGMIKLIYIDPPYNTGKDSFRYNDKFNHSTWMTFMKNRLEI 243

Query: 64  ---LVDAVTDSWDKFSSFEAY------------DAFTRAWLLACRRVLKPNGTLWVIGSY 108
              L+      W      E +            + F    +   +  +  +         
Sbjct: 244 AKELLSEDGCIWLNIDDDEGHYLKVLADGVFGRENFINNVIWEKKYTISNDAKYLSDNHD 303

Query: 109 HNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK------ 162
           H +F      ++ N W  N +           +  +  + H   +W +    AK      
Sbjct: 304 HLLFYA----KDKNNWKPNPL----PRTAEMNKAYKNPDNHPKGVWKATPLHAKSGSIKG 355

Query: 163 ---GYTFNYDALKAA------------------------------------------NED 177
               +TF+     +                                           N+ 
Sbjct: 356 ERFIHTFSNGVTWSPPIGTFPRFSKETLERLDMEDAIYFGKDGNAIPSRKTFLSELKNKG 415

Query: 178 VQMRSDWLIPICSGS----ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
           +  R+ W       +    E +++ + E    T KPE LL R+L   +  GDIILD F G
Sbjct: 416 IPARTVWRSDEVGHNHEAREEIKHLNLETDFTTPKPERLLQRVLTLGSLEGDIILDFFMG 475

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYID-IATKRIASV 268
           S T+ AVA K++R FIGIE + DYI+ ++  R+  V
Sbjct: 476 SATTQAVAMKMKRRFIGIE-QMDYINSVSIPRLEKV 510


>gi|325266200|ref|ZP_08132884.1| type III restriction/modification system modification methylase
           [Kingella denitrificans ATCC 33394]
 gi|324982430|gb|EGC18058.1| type III restriction/modification system modification methylase
           [Kingella denitrificans ATCC 33394]
          Length = 559

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 75/334 (22%), Positives = 112/334 (33%), Gaps = 91/334 (27%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPP---------YNLQLN-------------- 54
           + IIKGN++  L  L       V LI+ DPP         YN + N              
Sbjct: 93  NLIIKGNNLIALHSLATQFKGKVKLIYIDPPYNTGNDGFKYNDKFNHSTWLTFMKNRLEI 152

Query: 55  -GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA-WLLACRRVLK------PNGT----- 101
              L   D  +  ++ ++   +      + F R  ++    R  K        G      
Sbjct: 153 AKTLLADDGVIFVSIDENEHAYLKILMDEIFNRENFIGELIRKTKSTTNDVKTGFNIQHE 212

Query: 102 --LWVIGSYHNIFRIGTMLQNLNFWILNDIV---WRKSNPMPNFRGRRFQNAHETLIWAS 156
             L       NIF +G      N+   ++     W  S+P     GR+ +N  E      
Sbjct: 213 YLLIFAEDKSNIFLLGEEKDFSNYKNPDNDPNGDWTTSDPTATDDGRKIKNVMEI----K 268

Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG---------------- 200
                K            NE    +      +C   E   N+ G                
Sbjct: 269 NPYTGKIDIPGNGRRWRFNEQGFYKLLEEGRLCFKKEHKPNERGFFLKRYKNELKSDFLF 328

Query: 201 -------------------------EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
                                    +K+    KPE+L   I+ S T  GDI+LD   GSG
Sbjct: 329 LNSLDTVDNKFLNQVATKELIKLFDDKVFDFPKPESLFQIIIQSCTNQGDIVLDYHLGSG 388

Query: 236 TSGAVAKKLRRSFIGIEMKQDYID-IATKRIASV 268
           T+ AVA K+ R +IGIE + DYI+ +A +R+  V
Sbjct: 389 TTAAVAHKMNRQYIGIE-QMDYIETLAVERLKKV 421


>gi|210610977|ref|ZP_03288686.1| hypothetical protein CLONEX_00876 [Clostridium nexile DSM 1787]
 gi|210152202|gb|EEA83209.1| hypothetical protein CLONEX_00876 [Clostridium nexile DSM 1787]
          Length = 565

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 190 SGSERLRNKDGEKLHPT-QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
           +   +   K+G+   P  +KPE LL +I+  +T  GD++LD F GSGT+ A A KL R +
Sbjct: 345 NAWMKNLTKEGDVTFPNGKKPEKLLKQIIEMTTSEGDMVLDSFLGSGTTAATAHKLNRRW 404

Query: 249 IGIEMKQDYIDIATKRIASV 268
           IGIEM          R+ +V
Sbjct: 405 IGIEMGNQAYSHCKVRLDNV 424



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 56/171 (32%), Gaps = 22/171 (12%)

Query: 21  DKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + +I G+++  L+ L  K    +  I+ DPPYN                A  + +D    
Sbjct: 40  NMLIHGDNLLALKALENKYTGMIKCIYIDPPYNTG--------------AAFEHYDDNLE 85

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSN 135
              +    +  L   R +L  +GT+W+         +  +   +      +N I     N
Sbjct: 86  HSIWLGIMKKRLEILRNLLAEDGTIWIQIDDEEQAYLKVLCDEIFGRSNFVNMISVNMKN 145

Query: 136 PMPNFRG---RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
                 G   +R +   E ++  + +                +E +Q   D
Sbjct: 146 VAGASGGGEDKRLKKNCEYILVYAKNYDLLPLFNGPYKYTEMSELIQQYID 196


>gi|300215358|gb|ADJ79771.1| Type III restriction-modification system methylation subunit
           [Lactobacillus salivarius CECT 5713]
          Length = 424

 Score = 81.2 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G+ L  T KPE LL RIL   +   D++LD F GS T+ AVA K+ R FIGIE + +YI
Sbjct: 232 EGQALFGTPKPEKLLQRILTLGSNKNDLVLDFFMGSATTQAVAMKMGRRFIGIE-QMEYI 290

Query: 259 D-IATKRIASV 268
           + ++  R+  V
Sbjct: 291 NTVSVPRLQKV 301



 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 51/124 (41%), Gaps = 18/124 (14%)

Query: 42  LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
           +I+ DPPYN   +               D  DKF +   +  F ++ L     +L  +GT
Sbjct: 1   MIYLDPPYNTTKD--------------FDYNDKF-THATWLTFMKSRLEIAWDLLAEDGT 45

Query: 102 LWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
           +W+    +    +  +  ++      LN+++W+++   P    + F  +H+ +   + + 
Sbjct: 46  IWISIDDNESHYLKVLADSVFGRENFLNEVIWQRAYA-PVNLKKTFSRSHDYIQVYAKNN 104

Query: 160 KAKG 163
            +  
Sbjct: 105 SSNK 108


>gi|292489779|ref|YP_003532669.1| putative DNA adenine methylase [Erwinia amylovora CFBP1430]
 gi|291555216|emb|CBA23461.1| putative DNA adenine methylase [Erwinia amylovora CFBP1430]
          Length = 164

 Score = 81.2 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 43/92 (46%)

Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
            F+    +  N          +P                HP +KP  L+  I+ SST+PG
Sbjct: 63  QFDELRQQYENLRRPFSVTSEVPYTDVWTFKPVASYPGKHPCEKPAELMEHIITSSTRPG 122

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           D++ D F GSG +   A KL R+ IG+E++++
Sbjct: 123 DVVADFFMGSGATVKAALKLGRTAIGVELEEE 154


>gi|292898012|ref|YP_003537381.1| DNA methylase [unidentified phage]
 gi|291197860|emb|CBJ44955.1| putative DNA methylase [unidentified phage]
          Length = 194

 Score = 81.2 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 43/92 (46%)

Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
            F+    +  N          +P                HP +KP  L+  I+ SST+PG
Sbjct: 93  QFDELRQQYENLRRPFSVTSEVPYTDVWTFKPVASYPGKHPCEKPAELMEHIITSSTRPG 152

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           D++ D F GSG +   A KL R+ IG+E++++
Sbjct: 153 DVVADFFMGSGATVKAALKLGRTAIGVELEEE 184


>gi|313667098|gb|ADR72994.1| M1.BsrI [Geobacillus stearothermophilus]
          Length = 416

 Score = 81.2 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 36/68 (52%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
             KD  K H    P  L  R++   ++ GD+I DPF G GT+   A ++ R+ IGIE+  
Sbjct: 121 PRKDYHKEHGAVFPLKLAERLIKMYSREGDLIFDPFSGIGTTIKAALEMNRNGIGIELNP 180

Query: 256 DYIDIATK 263
            + ++  +
Sbjct: 181 KFYELTKQ 188



 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 15/113 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNL----QLNGQLYRPDHSLVDAVTDSWDKFSS 77
           K+   +  ++   L A SV  +   PPY       +  +     +SL+    +S  K  S
Sbjct: 235 KLFNDDCRNLTNYLEADSVQALITSPPYADFIRKSIEDREKVHKNSLIKFNNNSTVKPYS 294

Query: 78  FEA-------YDAFTRAWLLAC---RRVLKPNGT-LWVIGSYHNIFRIGTMLQ 119
                     YD F  A         +V+KP G  +WV+  Y +     + L 
Sbjct: 295 NSDLDLGNLPYDEFLEALFPIMEDTYKVIKPGGYAIWVVKDYKDKENFSSYLD 347


>gi|284006830|emb|CBA72095.1| phage DNA methyltransferase [Arsenophonus nasoniae]
          Length = 236

 Score = 81.2 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 17/129 (13%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAYD 82
           + G+++  ++ LP  S+DLI  DPPY                   + +WD ++ + E Y 
Sbjct: 2   VNGDALPYVKTLPDASIDLILTDPPY---------------YRVKSCAWDRQWKTTEQYL 46

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           A+   +L+  +RVLKPNG+L++  S         ML+N +  +LN I+W K         
Sbjct: 47  AWLNDYLVEFQRVLKPNGSLYLFCSAALAADTEIMLRN-HMRVLNHIIWAKPYGRWTGCS 105

Query: 143 RRFQNAHET 151
           +    ++  
Sbjct: 106 KESLRSYFP 114


>gi|16272988|ref|NP_439215.1| type III restriction-modification system methyltransferase-like
           protein [Haemophilus influenzae Rd KW20]
 gi|12230654|sp|P71366|T3MH_HAEIN RecName: Full=Putative type III restriction-modification system
           HindVIP enzyme mod; Short=M.HindVIP; AltName:
           Full=HindVIP methyltransferase
 gi|1574609|gb|AAC22721.1| predicted coding region HI1056 [Haemophilus influenzae Rd KW20]
          Length = 629

 Score = 81.2 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/63 (53%), Positives = 46/63 (73%), Gaps = 2/63 (3%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRI 265
           +KPEALL RI+  +TK GDI+LD   GSGT+ AVA K+ R +IGIE + DYI+ +A +R+
Sbjct: 435 KKPEALLRRIIDMTTKEGDIVLDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIETLAVERL 493

Query: 266 ASV 268
             V
Sbjct: 494 KKV 496



 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 17/104 (16%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       V LI+ DPPYN   +G  Y              DKF +
Sbjct: 121 NLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTGNDGFKY-------------NDKF-N 166

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
              +  F +  L   + +L  +G ++V         +  ++ ++
Sbjct: 167 HSTWLTFMKNRLEIAKTLLADDGVIFVQCDDIEQAYLKILMDDI 210


>gi|325130370|gb|EGC53136.1| putative type III restriction-modification system methyltransferase
           [Neisseria meningitidis OX99.30304]
          Length = 666

 Score = 81.2 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 83/229 (36%), Gaps = 28/229 (12%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY 58
             K   A  EN  S    ++ +I+G+++ VL+ L      SV +I+ DPPYN   +G +Y
Sbjct: 122 EDKTHNAKPENAGS----QNLLIRGDNLEVLKHLKNAYTNSVKMIYIDPPYNTGSDGFVY 177

Query: 59  RPDHSLVDA---------------VTDSWDKFS-SFEAYDAFTRAWLLACRRVLKPNGTL 102
           + D     A               + D  DK S S  A+  F    L   R +LK +G +
Sbjct: 178 QDDRKFTPAELACLANIDEDEAARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVI 237

Query: 103 WVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
           ++    +   ++  +   +         V  +    P    + F N H+ ++  + +   
Sbjct: 238 FISIDDNEAAQLKLLCDEVFGEGNFVANVIWQKKYSPQNDAKWFSNMHDYILCVAKNKDI 297

Query: 162 KGYTF----NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
                         + +N D   R +W     S      N D     P+
Sbjct: 298 WRPNLLERTEEQNARYSNPDNDERGNWKATDFSVKTYSENYDYPITTPS 346



 Score = 59.2 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 21/99 (21%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-------RSFIGIEM--- 253
             T KP  LL+ ++  S+   DI++D F GSGT+     +L        R +I +++   
Sbjct: 427 FETPKPVRLLNYLIKLSSNSDDIVMDFFAGSGTTAHAVMQLNAEEQNGSRRYICVQLPEK 486

Query: 254 -----------KQDYIDIATKRIASVQPLGNIELTVLTG 281
                           DI   RI         E    TG
Sbjct: 487 TGEKSEARKAGYPTIFDITKARIEKAAAKIRAEHPDYTG 525


>gi|332715663|ref|YP_004443129.1| type III restriction-modification system StyLTI enzyme mod
           [Agrobacterium sp. H13-3]
 gi|325062348|gb|ADY66038.1| type III restriction-modification system StyLTI enzyme mod
           [Agrobacterium sp. H13-3]
          Length = 896

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 75/207 (36%), Gaps = 27/207 (13%)

Query: 19  WKDKIIKGNSISVLEKL-----PAKSVDLIFADPPYNLQLNGQL----------YRPDH- 62
           W +++I G+S+ V+  L         V  I+ DPPY ++               + PD+ 
Sbjct: 176 WTNRLILGDSLQVMNSLLEYEGMGGQVQTIYFDPPYGVKFGSNFQPFVRKNSVKHGPDNE 235

Query: 63  -----SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
                 +V A  D+W+      +Y ++ R  L   + +LKP+G++ V  S  N+  +  +
Sbjct: 236 MIREPEMVKAYRDTWE--LGLHSYLSYMRDRLTLAKELLKPDGSIIVQISDDNLHHVREI 293

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
           +  +        +               +  ++ L+W   +PK   +   Y   +   + 
Sbjct: 294 MDEVFTPENFIALIPFRKKTMPLGATYLEQMNDFLLWYGRNPKQAKFHQPYYEQEIQGDF 353

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLH 204
                +    +   S     KD    H
Sbjct: 354 HWKWYE----LPDSSRHSMTKDQVDNH 376



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 38/64 (59%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K +  Q  + ++ R L  ++ PGD++LD   GSGT+  VA++L R +I  +  +  I +A
Sbjct: 469 KSYVVQTSDEVVRRCLTMTSDPGDLVLDITCGSGTTAFVAEQLGRRWITCDTSRVPIALA 528

Query: 262 TKRI 265
            +R+
Sbjct: 529 RQRL 532


>gi|218134951|ref|ZP_03463755.1| hypothetical protein BACPEC_02856 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990336|gb|EEC56347.1| hypothetical protein BACPEC_02856 [Bacteroides pectinophilus ATCC
           43243]
          Length = 289

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 190 SGSERLRNKDGEKLHPT-QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
           +   +   K+G+   P  +KPE LL +I+  +T  GD++LD F GSGT+ A A KL R +
Sbjct: 69  NAWMKNLTKEGDVTFPNGKKPEKLLKQIIEMTTLEGDMVLDSFLGSGTTAATAHKLNRRW 128

Query: 249 IGIEMKQDYIDIATKRIASV 268
           IGIEM          R+ +V
Sbjct: 129 IGIEMGNQAYSHCKVRLDNV 148


>gi|332672250|ref|YP_004455258.1| DNA methylase N-4/N-6 domain-containing protein [Cellulomonas fimi
           ATCC 484]
 gi|332341288|gb|AEE47871.1| DNA methylase N-4/N-6 domain protein [Cellulomonas fimi ATCC 484]
          Length = 373

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 44/66 (66%), Gaps = 1/66 (1%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD-YIDIAT 262
             T KPEAL++R++  ++ PGD++LD F GSGT+ AVA K  R ++ +E ++  + ++A 
Sbjct: 282 FETPKPEALVARVIGVASDPGDLVLDLFAGSGTTAAVAHKTGRRWVAVEREERTFTEVAV 341

Query: 263 KRIASV 268
            R+  V
Sbjct: 342 PRLELV 347



 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 58/192 (30%), Gaps = 16/192 (8%)

Query: 21  DKIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           + +  G +  +L  L A    V L   DPPYN     +  R  H       D+W +    
Sbjct: 19  NVLALGEADDLLAHLAAADVPVRLALLDPPYN-----RRTRFHHYADSQRRDAWAQDRRR 73

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           +A          A R +L  +G+LWV      +  + T+L  +               M 
Sbjct: 74  QA---------AAVRDLLTDDGSLWVHIDDAEMPVMRTLLDEVFGPDAFVATVVWQKTMS 124

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
                    +HE L+  + +  A     N         D     D        S  L  K
Sbjct: 125 RDSRTAVSTSHEYLLVYARNRIAWHARRNKMPPTPTQLDRYRNPDADPRGPWTSGDLMAK 184

Query: 199 DGEKLHPTQKPE 210
            G      Q  +
Sbjct: 185 AGPGRRAAQFYD 196


>gi|241589847|ref|YP_002979872.1| DNA methylase N-4/N-6 domain protein [Ralstonia pickettii 12D]
 gi|240868559|gb|ACS66218.1| DNA methylase N-4/N-6 domain protein [Ralstonia pickettii 12D]
          Length = 412

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 52/290 (17%), Positives = 91/290 (31%), Gaps = 70/290 (24%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           GN   V   L  + + L+   PP+ L               A   ++    + + Y  F 
Sbjct: 116 GNCKQVFAGL-NEPIQLVVTSPPFLL---------------AKPRAYGNPPTMQDYIDFV 159

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNI-----------FRIGTMLQN-LNFWILNDIVWRK 133
              +    R L P  ++ +  S                R+   L++ L   +++ IVW+ 
Sbjct: 160 CGAIEPVCRHLAPGASIVINLSNDCHVKGSPARSTYLERLVLALEDRLGLHLMDRIVWKS 219

Query: 134 SNP-----MPNFRGRRFQNAHETLIWASPSPKA---------KGYTFNY----------D 169
           S           R  + + A+E   W +  P             +T  +           
Sbjct: 220 SKAPGPTQWACLRPIQLKTAYEYCYWFTNDPSCVRSNNRKILLPHTERHLKFMEEGGVKK 279

Query: 170 ALKAANEDVQMRSDWLIPICSG------------------SERLRNKDGEKLHPTQKPEA 211
           A    +     R      +  G                    R   + G  LH    P  
Sbjct: 280 AASYGDGSQVHRLGQFGTVTEGRLPSNVLEVGTSCADTRAYRRRAAELGLPLHGAMMPTR 339

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           +    +   T+PGD+++DPF G+G +   A++L R +   E    YI  A
Sbjct: 340 IPEFFIKFLTEPGDLVVDPFGGTGKTALAAERLGRRWAMAEKMLQYIRGA 389


>gi|82544405|ref|YP_408352.1| DNA adenine methyltransferase encoded by prophage [Shigella boydii
           Sb227]
 gi|81245816|gb|ABB66524.1| putative DNA adenine methyltransferase encoded by prophage
           [Shigella boydii Sb227]
 gi|320184646|gb|EFW59442.1| putative DNA methylase [Shigella flexneri CDC 796-83]
 gi|332094403|gb|EGI99452.1| modification methylase DpnIIB domain protein [Shigella boydii
           3594-74]
          Length = 194

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 43/83 (51%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD+I D F GSG++   A  L 
Sbjct: 107 VPYTDVWTHKPVQFYPGKHPCEKPAEMLQQIISASSRPGDLIADFFMGSGSTVKAALALG 166

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  IG+E++ +  +   + +  +
Sbjct: 167 RRAIGVELETERFEQTVREVQDL 189


>gi|194335498|ref|YP_002017292.1| DNA methylase N-4/N-6 domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194307975|gb|ACF42675.1| DNA methylase N-4/N-6 domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 581

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 44/77 (57%)

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           S  + N+ G +    +KPEAL+ R    +T  GD++LD F GSGT+GAVA K+ R +I +
Sbjct: 329 SNNIHNEGGIEFPKGKKPEALIKRCFELATIDGDLVLDSFAGSGTTGAVAHKMGRRWIMV 388

Query: 252 EMKQDYIDIATKRIASV 268
           E+ +        R+  V
Sbjct: 389 ELGEHCHTHIIPRLQKV 405



 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 47/132 (35%), Gaps = 19/132 (14%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
           N IF+  +++I G+++  L+ L    +  V  ++ DPP+N Q                 +
Sbjct: 42  NDIFD--NRLIFGDNLLALKALEQEFSGKVKCVYIDPPFNTQ--------------QAFE 85

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
            +D       +    R  +   R ++  +GTL+V    + +  +  +L  +        V
Sbjct: 86  HYDDGLEHSIWLGLIRDRIDIIRNLISEDGTLFVHIDDNELGYLIVLLDEIFGRQNRITV 145

Query: 131 WRKSNPMPNFRG 142
                       
Sbjct: 146 VSFKQGAATGHK 157


>gi|153806916|ref|ZP_01959584.1| hypothetical protein BACCAC_01192 [Bacteroides caccae ATCC 43185]
 gi|149131593|gb|EDM22799.1| hypothetical protein BACCAC_01192 [Bacteroides caccae ATCC 43185]
          Length = 250

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 78/256 (30%), Gaps = 43/256 (16%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++   + +  L+K P    DL   DPPY +  +    +P+                    
Sbjct: 5   EVYNIDRMDFLKKFPDNFFDLFIDDPPYGIGADNPSIKPNTVKQSNGN------------ 52

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                        +L    +++    + +          +     N I+W  +    +F 
Sbjct: 53  -------------ILYVKQSVYPKSDWDSRVPPPEYFDEVKRVSRNQIIWGVNYFNYDFT 99

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS--------- 192
           G R       ++W   +     Y          N    +   W   I             
Sbjct: 100 GGR-------IVWDKLNGDTDQYDCEIAYCSMNNRTDLVYCMWRGMIQGTYCGKDLSKAI 152

Query: 193 --ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
             +  +  + +++HP QKP  L + +L     PG  I D   GS +S   A KLR  + G
Sbjct: 153 IQQGNKKLNEKRIHPCQKPVILYAWLLNQYANPGYKIGDAHMGSQSSRIAAYKLRFDYWG 212

Query: 251 IEMKQDYIDIATKRIA 266
            E  + +      R  
Sbjct: 213 CEKDKFHFKEGNSRFR 228


>gi|149173391|ref|ZP_01852021.1| Adenine-specific DNA methylase [Planctomyces maris DSM 8797]
 gi|148847573|gb|EDL61906.1| Adenine-specific DNA methylase [Planctomyces maris DSM 8797]
          Length = 282

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 7/123 (5%)

Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
              + +     Y+AL          S W         R   ++    HP   PE L+ R+
Sbjct: 9   KKKRTRQLPPPYNALDGKRWIQNSISVW------SDIRKSLEEVRLKHPAIFPEMLVERL 62

Query: 217 LVSSTK-PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           + +     G++ILDPF GSG++   A+K+ ++ IG+E+ +DY ++A  R+ ++    + +
Sbjct: 63  IETFLPLQGEVILDPFAGSGSTIVTAEKMGKTGIGLELSEDYAEVARNRLMALSLEADEQ 122

Query: 276 LTV 278
              
Sbjct: 123 TEC 125



 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 60/171 (35%), Gaps = 18/171 (10%)

Query: 7   LAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           +A++   +   E K +II G+++ + E +  +SVDL    PPY   LN Q    DH  V 
Sbjct: 113 MALSLEADEQTECKSRIIHGSALQLAEHVAPESVDLCITSPPYWNVLN-QRRSADHKEVR 171

Query: 67  AVTDSWDKFSSFEAYDAFTRA---WLLACRRVLKPNGTLWVI-GSYHNIFRI-------G 115
              +        E Y+AF              LKP      I        R         
Sbjct: 172 HYGNHDQDLGVIEDYNAFLDELDRVFTQVLTALKPGAYCCAIVMDLRKRSRFFPFHSDLA 231

Query: 116 TMLQNLNFWILNDIVWRKS------NPMPNFRGRRFQNAHETLIWASPSPK 160
           + LQ + F   + I+W +        P+      R    HE ++      +
Sbjct: 232 SRLQEVGFLYDDLIIWNRQAEYNNLRPLGFPSVFRVNKVHEFIVLMQKPKQ 282


>gi|55822847|ref|YP_141288.1| type III restriction-modification system methylation subunit
           [Streptococcus thermophilus CNRZ1066]
 gi|55738832|gb|AAV62473.1| type III restriction-modification system methylation subunit
           [Streptococcus thermophilus CNRZ1066]
          Length = 646

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           DG+    T KPE L+ RIL   +   D++LD F GS T+ AVA K+ R FIGIE + DYI
Sbjct: 450 DGQTAFGTPKPEKLIQRILTLGSDENDLVLDFFMGSATTQAVAMKMNRRFIGIE-QMDYI 508

Query: 259 -DIATKRIASV 268
             ++  R+  V
Sbjct: 509 STVSVPRLQKV 519



 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 63/162 (38%), Gaps = 18/162 (11%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLY 58
           +Q ++   NE  +   E  + IIKGN++  L  L  +    V  I+ DPPYN   +   Y
Sbjct: 174 AQHSTAVDNEIVSFDKEKDNLIIKGNNLLALHALKNEFAGKVRQIYIDPPYNTGKDSFNY 233

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
                         DKF +  ++  F +  L     +L  +GT+W+    +    +  + 
Sbjct: 234 -------------NDKF-NHSSWLVFMKNRLEIAWELLSDDGTIWISIDGYESHYLKVLA 279

Query: 119 QNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
             +       D V  +    P    + F  +H+ ++  + + 
Sbjct: 280 DGIFGAENFLDEVVWQRAYAPINLKKTFSKSHDYILVYAKNN 321


>gi|238898170|ref|YP_002923851.1| DNA methylase, N6_N4_Mtase domain protein [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229465929|gb|ACQ67703.1| DNA methylase, N6_N4_Mtase domain protein [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 360

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 51/125 (40%), Gaps = 8/125 (6%)

Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
                + K    N     +  +DV     W  P          K     HP +KP ALL 
Sbjct: 244 MKSHDELKRQYENLRRPFSVTKDVPYTDVWNFP---PVLYYPGK-----HPCEKPAALLE 295

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
            I+ +S+KP   + D F GSG++   A +  R  IG+E++ D      K I ++ P  N 
Sbjct: 296 HIINASSKPKHTVADFFMGSGSTVKAAIQSGRQAIGVELETDRFLQTKKEIENLIPQINY 355

Query: 275 ELTVL 279
           +  + 
Sbjct: 356 QGMIF 360



 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 60/128 (46%), Gaps = 17/128 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAY 81
           ++ G+++  ++ LP  S+DLI  DPPY                   + +W+ ++ +   Y
Sbjct: 9   LVNGDALPYVKTLPDDSIDLILTDPPY---------------YRVKSCAWERQWKTTGQY 53

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            A+   +L+  +R+LKPNG+L++  S         M +N +  +LN I+W K        
Sbjct: 54  LAWLNDYLVEFQRILKPNGSLYLFCSAELAADTEIMPRN-HMRMLNHIIWAKPYGRGTGC 112

Query: 142 GRRFQNAH 149
            + +  ++
Sbjct: 113 SKEWLRSY 120


>gi|197284843|ref|YP_002150715.1| phage DNA adenine-methylase [Proteus mirabilis HI4320]
 gi|194682330|emb|CAR42127.1| phage DNA adenine-methylase [Proteus mirabilis HI4320]
          Length = 340

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 73/172 (42%), Gaps = 24/172 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           ++   +++++L+ LP   +DLI  DPPY                   + +WD ++ + EA
Sbjct: 2   QLYNNDALAILKTLPDNYIDLIATDPPYF---------------RVKSCAWDNQWDNVEA 46

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y ++    L+   RVLKPNG+L++      +     +L    F +L+ I+W K +     
Sbjct: 47  YLSWFDEVLVEFWRVLKPNGSLYLFCGSK-LASDTELLVRGRFNVLSHIIWAKPSGPWRR 105

Query: 141 RG----RRFQNAHETLIW---ASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
           +     R F  + E +++         AKG  F+    +      +   D+ 
Sbjct: 106 QNKESLRTFFPSTERILFAEHYQKPITAKGSEFSLKCQELKQNVFKPLIDYF 157



 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 43/83 (51%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     H  +KP A++  I+ SS++ GD++ D F GSG +   A KL 
Sbjct: 255 VPYTDVWAYPPVQYYPGKHLCEKPSAMMEHIIRSSSREGDLVADFFMGSGATLKAALKLN 314

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  +G+E++++  +   + I ++
Sbjct: 315 RKVLGVELEKERFEQTEQEIKAL 337


>gi|268318802|ref|YP_003292458.1| type III restriction-modification system: adenine specific DNA
           methylase [Lactobacillus johnsonii FI9785]
 gi|262397177|emb|CAX66191.1| type III restriction-modification system: adenine specific DNA
           methylase [Lactobacillus johnsonii FI9785]
          Length = 698

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 3/123 (2%)

Query: 191 GSERLRNKDGEKLHPT-QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           G+ +  NK+G+      +KPE LLSRI+  +T   +++LD F GSG++ A A KL R FI
Sbjct: 489 GATKNVNKEGQVSFSNGKKPEELLSRIIKMATNENELVLDMFLGSGSTSATALKLNRRFI 548

Query: 250 GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER--GLIQPGQILTN 307
           G+E     I++  KR+ +V       ++     +      +  L+E+  G ++  Q  T+
Sbjct: 549 GVEQIDHQINLIKKRMTNVINGEKNGISEAVNWQGGGSFIYAELLEKNQGYLRAIQNATD 608

Query: 308 AQG 310
              
Sbjct: 609 MDK 611



 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 65/177 (36%), Gaps = 23/177 (12%)

Query: 16  IFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           I +  + IIKGN++  L  L    A  V LI+ DPPYN   +  LY              
Sbjct: 177 ISDDDNLIIKGNNLIALYSLEKRFAGKVKLIYLDPPYNTGTDSFLY-------------N 223

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--ILNDIV 130
           D+F +  ++  F +  L  C+ +L   G + +         +  ++  +      +N I 
Sbjct: 224 DRF-NQASWLTFMKNRLEICKNMLSDEGHIVIQTDDTEQAYLKVLMDEIFKKENYVNTIS 282

Query: 131 WRKSNPMPNFRG----RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
               N      G    R  +N     I+A     +  +   YD  +      +MR +
Sbjct: 283 VLFKNIAGASGGGEDKRLKKNIEYLTIYAKNYSFSNPFNDVYDYKQVGKLVQEMREN 339


>gi|55820925|ref|YP_139367.1| type III restriction-modification system methylation subunit
           [Streptococcus thermophilus LMG 18311]
 gi|55736910|gb|AAV60552.1| type III restriction-modification system methylation subunit
           [Streptococcus thermophilus LMG 18311]
          Length = 641

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           DG+    T KPE L+ RIL   +   D++LD F GS T+ AVA K+ R FIGIE + DYI
Sbjct: 445 DGQTAFGTPKPEKLIQRILTLGSDENDLVLDFFMGSATTQAVAMKMNRRFIGIE-QMDYI 503

Query: 259 -DIATKRIASV 268
             ++  R+  V
Sbjct: 504 STVSVPRLQKV 514



 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 63/162 (38%), Gaps = 18/162 (11%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLY 58
           +Q ++   NE  +   E  + IIKGN++  L  L  +    V  I+ DPPYN   +   Y
Sbjct: 169 AQHSTAVDNEIVSFDKEKDNLIIKGNNLLALHALKNEFAGKVRQIYIDPPYNTGKDSFNY 228

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
                         DKF +  ++  F +  L     +L  +GT+W+    +    +  + 
Sbjct: 229 -------------NDKF-NHSSWLVFMKNRLEIAWELLSDDGTIWISIDGYESHYLKVLA 274

Query: 119 QNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
             +       D V  +    P    + F  +H+ ++  + + 
Sbjct: 275 DGIFGAENFLDEVVWQRAYAPINLKKTFSKSHDYILVYAKNN 316


>gi|270639987|ref|ZP_06222113.1| modification methylase LlaFI [Haemophilus influenzae HK1212]
 gi|270317361|gb|EFA28892.1| modification methylase LlaFI [Haemophilus influenzae HK1212]
          Length = 127

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 2/63 (3%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRI 265
           +KPE+L+  I+  +T   DI+LD   GSGT+ AVA K+ R +IGIE + DYI+ +A +R+
Sbjct: 54  KKPESLIETIIKLATNESDIVLDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIETLAVERL 112

Query: 266 ASV 268
             V
Sbjct: 113 KKV 115


>gi|207108804|ref|ZP_03242966.1| type II restriction enzyme M protein (hsdM) [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 113

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/97 (43%), Positives = 55/97 (56%), Gaps = 5/97 (5%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
           Y+ LK  N D QMR  W  P  +  E+   K     HPTQKP ALL R+L+ ++    +I
Sbjct: 1   YEVLKKINNDKQMRDVWNFPAIAPWEKANGK-----HPTQKPLALLVRLLLMASDENSLI 55

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            DPF GS T+G  A  L+R FIGIE +  +I I+  R
Sbjct: 56  GDPFSGSSTTGIAANLLKREFIGIEKESGFIKISMDR 92


>gi|237756376|ref|ZP_04584922.1| DNA methylase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691457|gb|EEP60519.1| DNA methylase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 224

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 75/233 (32%), Gaps = 35/233 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+   +S S +E++  +S+ LI   PPY            H     V +      +   Y
Sbjct: 6   KLYIADSRS-MEEVEDESISLIITSPPY-----------WHIKDYGVENQIGYGQTLHDY 53

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYH--------------NIFRIGTMLQNLNFWILN 127
                   L C RVLKP   L +                       I +  + + F  + 
Sbjct: 54  LKDLYRVWLECFRVLKPGRRLCINVGDQFARSVIYGRYKVIPIHSEIISQCEKIGFDYMG 113

Query: 128 DIVWRKSNPMPNFRGRRFQNAHET-------LIWASPSPKAKGYTFNYDALKAANEDVQM 180
            I+W+K   +    G     ++         + +       K       A     +    
Sbjct: 114 SIIWQKKTTINTTGGAVVMGSYPYPPNGLVEIDYEYILIFKKPGGKEKIAKDIKEKSKLT 173

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
           + +W     SG  +   +  +  H    PE L  R++   +  G+ +LDPF G
Sbjct: 174 KEEWKE-YFSGHWKFGGEK-QINHEAMFPEELPKRLIKMFSFVGETVLDPFVG 224


>gi|317164414|gb|ADV07955.1| putative type III restriction/modification system modification
           methylase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 237

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 2/63 (3%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRI 265
           +KPE+L+  I+  +T   DI+LD   GSGT+ AVA K+ R +IGIE + DYI+ +A +R+
Sbjct: 38  KKPESLIETIIKLATNENDIVLDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIETLAVERM 96

Query: 266 ASV 268
             V
Sbjct: 97  KKV 99


>gi|296535574|ref|ZP_06897755.1| prophage LambdaMc01 [Roseomonas cervicalis ATCC 49957]
 gi|296264090|gb|EFH10534.1| prophage LambdaMc01 [Roseomonas cervicalis ATCC 49957]
          Length = 111

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 39/68 (57%)

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
            +D   +H TQKP A + R + +S+  G  + +PF GSGT+   A+   R+   +E+   
Sbjct: 11  GQDAATIHGTQKPVACMRRPIENSSSAGQAVYEPFCGSGTTLIAAEMTGRACHALELDPA 70

Query: 257 YIDIATKR 264
           Y+D+A +R
Sbjct: 71  YVDVAVQR 78


>gi|261493911|ref|ZP_05990420.1| DNA methylase N-4/N-6 [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261310414|gb|EEY11608.1| DNA methylase N-4/N-6 [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 490

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 39/68 (57%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           E      KPE L+  +L +ST+P D++LD F GSGT+ AVA K  R +IGIE+ +     
Sbjct: 343 EDSFDYPKPEKLIQFVLEASTEPYDLVLDSFLGSGTTAAVAHKTNRRYIGIEIGEHAKTH 402

Query: 261 ATKRIASV 268
              R+  V
Sbjct: 403 VVPRLKKV 410



 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 17/105 (16%)

Query: 20  KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           ++ II+G+++S L+ L       V  IF DPPYN +              +    +D   
Sbjct: 64  QNLIIQGDNLSALKSLLPFYAGQVKCIFIDPPYNTK--------------SAFTHYDDNL 109

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
               + +     L   R +L  +G++W+    +    +  ML  +
Sbjct: 110 EHSVWLSMMYPRLEILRDLLAEDGSIWITLDDNESHYLKIMLDEI 154


>gi|313124724|ref|YP_004034983.1| DNA recognition and methylase subunit mod (type iii restriction and
           modification system),llafi-like protein [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312281287|gb|ADQ62006.1| DNA recognition and methylase subunit Mod (Type III restriction and
           modification system),LlaFI-like protein [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 538

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 43/84 (51%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
              +       R++ G +    +KPEAL+  I+   +   D +LD F GSG++ A A K+
Sbjct: 315 FYDLAGSFGNCRHEGGVEFRSGKKPEALIEMIIRYFSNKTDWVLDSFLGSGSTTATAHKM 374

Query: 245 RRSFIGIEMKQDYIDIATKRIASV 268
           +R +IGIEM      +   R+ +V
Sbjct: 375 QRRWIGIEMGDHAYTLCKTRMDNV 398



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 53/167 (31%), Gaps = 17/167 (10%)

Query: 17  FEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
            + ++ +I G+++  L+ L    A  +  I+ DPPYN                +  + +D
Sbjct: 37  PDSENMLIHGDNLIALQALQQDFAGKIKCIYIDPPYNTG--------------SAFEYYD 82

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                  + +  R  LL    +L  +G L           +  +L  +            
Sbjct: 83  DDMEHSIWLSLMRKRLLLLHSLLSDDGFLCCHIDDSESHYLKVVLDEIFGRSNYLTTMYI 142

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
               P+   +   + H+ +       +    T N+D  +   +    
Sbjct: 143 RVRYPDKTLKSDMDFHKEIEQVLVYRRTPEATPNFDYDEVGYDKFIY 189


>gi|148257835|ref|YP_001242420.1| adenine-specific DNA-methyltransferase [Bradyrhizobium sp. BTAi1]
 gi|146410008|gb|ABQ38514.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Bradyrhizobium sp. BTAi1]
          Length = 396

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 38/80 (47%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPT KP  ++  ++   + PG  +LDPF GSGT+G  A    R  I +E+ + + D    
Sbjct: 298 HPTVKPLDVMQWLVRLVSMPGQTVLDPFAGSGTTGEAALAEGRRSILVELDKQFQDDIAD 357

Query: 264 RIASVQPLGNIELTVLTGKR 283
           R+ +     +     L   +
Sbjct: 358 RMRTALAGPDERKRQLIKAK 377



 Score = 56.9 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 6/116 (5%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + +  + +G+ ++VL  LP  S+D    DPPY L      +  + S V          ++
Sbjct: 7   DGRVTLHRGDMLAVLPSLPEASIDACVCDPPYVLPKVAARFGKEDSAVAQGRVYQGALAN 66

Query: 78  FEAYDAFT------RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
           F    A                RVLKP   +    + +N   +   L    F +  
Sbjct: 67  FVGKPAIVGDVAHKAETWREVYRVLKPGAWVVAFSAANNFGGLQNALVAAGFEVRE 122


>gi|331090152|ref|ZP_08339040.1| hypothetical protein HMPREF1025_02623 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330402098|gb|EGG81670.1| hypothetical protein HMPREF1025_02623 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 537

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 43/84 (51%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
              +       R++ G +    +KPEAL+  I+   +  GD +LD F GSG++ A A K+
Sbjct: 314 FYDLAGNFGNCRHEGGVEFRSGKKPEALIEMIIRYFSNKGDWVLDSFLGSGSTIATAHKM 373

Query: 245 RRSFIGIEMKQDYIDIATKRIASV 268
            R ++G+E+      +   R+ +V
Sbjct: 374 GRKWVGVELGDHAYTLCKVRMDNV 397



 Score = 61.9 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 52/163 (31%), Gaps = 17/163 (10%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + +I G+++  L+ L    A  +  I+ DPPYN                +  + +D    
Sbjct: 40  NMLIHGDNLIALQALQQDFAGRIKCIYIDPPYNTG--------------SAFEYYDDNLE 85

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
              + +  +  L+  R +L  +G L           +  +L  +                
Sbjct: 86  HSIWLSLMKQRLILLRELLSDDGFLCCHIDDSESHYVKVLLDEIFGRSNYLTTLYVRVRY 145

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           P+   +   + H+ +       +  G T N+D      E    
Sbjct: 146 PDKTLKSDMDFHKEIEQVLVYRRNYGATPNFDHDDVGYEKFIY 188


>gi|171920243|ref|ZP_02931612.1| type III restriction-modification system methylation subunit
           [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|171902642|gb|EDT48931.1| type III restriction-modification system methylation subunit
           [Ureaplasma parvum serovar 1 str. ATCC 27813]
          Length = 622

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 79/191 (41%), Gaps = 10/191 (5%)

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y   T+  +           +L    S +        + ++ F +  +  ++  N     
Sbjct: 315 YKDITKEKIEELYEFDDDFRSLIHNHSNNI---FQDAMIDIKFNLSEEDNFKLKNNEIIK 371

Query: 141 RGRR--FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
                 F+ +   +    P  KA G T ++D+     +   +R +W          +  +
Sbjct: 372 FKDYLIFKTSTNVIRQLLPLEKAIGPTDDFDSKFGLRK---IRGNWWPNFYKDMMNINKE 428

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
                   +KPE L+  I+  STK  DI+LD   GSGT+ AVA K+ R +IGIE + DYI
Sbjct: 429 ANFVWKSGKKPERLIKDIIKLSTKQNDIVLDFHLGSGTTCAVAHKMNRQYIGIE-QMDYI 487

Query: 259 D-IATKRIASV 268
           + I  +R+  V
Sbjct: 488 ENITIERLKKV 498



 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 63/175 (36%), Gaps = 23/175 (13%)

Query: 18  EWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           E  + IIKGN++  L  +       +  I+ DPPYN   +   Y              DK
Sbjct: 136 EHDNLIIKGNNLIALASILNRYENKIKCIYIDPPYNTGNDSFNY-------------NDK 182

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW------ILND 128
           F +   +  F +  L   +++L+ +G ++V    +    +  ++  +         +  +
Sbjct: 183 F-NHSTWLVFMKNRLELAKKLLRDDGVIFVQCDDNEQAYLKVLMDEVFGRENFSTTLHVE 241

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
           +   +   +   +  +     E ++    +   K +T      K+ +    +  D
Sbjct: 242 LSTTQGMKVGAAQKGQIVKNGEYILIYHKNYNLKFFTNLIFDSKSWDSHYSIYID 296


>gi|15828869|ref|NP_326229.1| type III restriction-modification system: methylase [Mycoplasma
           pulmonis UAB CTIP]
 gi|14089812|emb|CAC13571.1| TYPE III RESTRICTION-MODIFICATION SYSTEM: METHYLASE [Mycoplasma
           pulmonis]
          Length = 652

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI-DIATKRI 265
           QKPE L+ RI+   T+  D++LD   GSGT+ AVA K+ R +IGIE + DYI DI  +R+
Sbjct: 459 QKPEKLIERIIKLGTEKNDLVLDFHLGSGTTTAVAHKMGRKYIGIE-QMDYIQDITIERM 517

Query: 266 ASV 268
             V
Sbjct: 518 KKV 520



 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 59/148 (39%), Gaps = 18/148 (12%)

Query: 18  EWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           E  + IIKGN++  L  L     + V LI+ DPPY        +         + +S  K
Sbjct: 136 ENDNLIIKGNNLIALSSLLERYEEKVKLIYIDPPY-------YFEDKKEENTFLYNSNFK 188

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWR 132
            S+   + +F +  L   + +L+ +G ++V  S      +  ++  +  N   +N IV +
Sbjct: 189 LST---WLSFMKNRLEITKMLLREDGFIFVQISDDGFAYLKVIMDEIFGNKKYINTIVVK 245

Query: 133 KSNPMPNFRG---RRFQNAHETLIWASP 157
                    G   ++ +   E ++    
Sbjct: 246 TKASSGASGGGEDKKLKKNIEYILVYGK 273


>gi|268601532|ref|ZP_06135699.1| type III restriction/modification system modification methylase
           [Neisseria gonorrhoeae PID18]
 gi|268585663|gb|EEZ50339.1| type III restriction/modification system modification methylase
           [Neisseria gonorrhoeae PID18]
          Length = 253

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 2/63 (3%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRI 265
           +KPE+L+  I+  +T   DI+LD   GSGT+ AVA K+ R +IGIE + DYI+ +A +R+
Sbjct: 54  KKPESLIETIIKLATNENDIVLDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIETLAVERM 112

Query: 266 ASV 268
             V
Sbjct: 113 KKV 115


>gi|153869627|ref|ZP_01999177.1| DNA modification methyltransferase [Beggiatoa sp. PS]
 gi|152073910|gb|EDN70826.1| DNA modification methyltransferase [Beggiatoa sp. PS]
          Length = 183

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 8/102 (7%)

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
            LL RI+  +T  GD +LDPF GSGT+   A  L R  IG+++ +  I +  +R+ +  P
Sbjct: 1   MLLERIIHLTTDRGDTVLDPFCGSGTTLVAANLLERHAIGMDISEQAIALTQERLNN--P 58

Query: 271 LGNIELTVLTGKRTEPRVAFNLLVERGL-IQPGQILTNAQGN 311
           + +    +  G     R A+N   E+ L I  G  L   Q N
Sbjct: 59  IKSDSHLLKKG-----REAYNTSDEKALAILQGLDLIPVQRN 95


>gi|315653150|ref|ZP_07906075.1| type III restriction-modification system: methylase [Lactobacillus
           iners ATCC 55195]
 gi|315489515|gb|EFU79152.1| type III restriction-modification system: methylase [Lactobacillus
           iners ATCC 55195]
          Length = 654

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           G+  + +          KPE L+  IL   T P D++LD   GSGT+ AVA K+ R +IG
Sbjct: 454 GNNEITDLFSRDEFDYAKPEELIKAILKIVTNPSDLVLDFHLGSGTTAAVAHKMGRRYIG 513

Query: 251 IEMKQDYI-DIATKRIASV 268
           +E + DYI DI  +R+  V
Sbjct: 514 VE-QMDYIQDITVERLKKV 531



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 45/115 (39%), Gaps = 15/115 (13%)

Query: 11  ENQNSIFEWKDKIIKGNSI----SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           E   +  +  + IIKGN++    S+L++   K V  I+ DPPY    N  +         
Sbjct: 179 ETGITFKDDDNLIIKGNNLIALVSLLKRYEGK-VKCIYIDPPYY--FNKTIGEDSFKYNS 235

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
               S         +  F +  L    ++L  +G++W+      +  +  +  ++
Sbjct: 236 NFKMS--------TWLTFMKNRLELANKLLSSHGSIWIHMGEDGMHYLKVLADDV 282


>gi|217967679|ref|YP_002353185.1| DNA methylase N-4/N-6 domain protein [Dictyoglomus turgidum DSM
           6724]
 gi|217336778|gb|ACK42571.1| DNA methylase N-4/N-6 domain protein [Dictyoglomus turgidum DSM
           6724]
          Length = 1015

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 43/70 (61%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
            PT+  E LL R++ S++  GD+++D F GSGT+ AVA KL+R +IGIEM + +  +   
Sbjct: 746 FPTENSEILLKRVIESTSNQGDLVMDFFLGSGTTTAVAHKLKRKWIGIEMGEHFWTVVLP 805

Query: 264 RIASVQPLGN 273
           R+  V     
Sbjct: 806 RMKKVLAYDK 815



 Score = 43.1 bits (100), Expect = 0.075,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 50/140 (35%), Gaps = 15/140 (10%)

Query: 38  KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK 97
           + V  I+ DPP+N     +    D+       DS         + +     L   R +L 
Sbjct: 489 EKVQTIYIDPPFN-----KEQDADYLYNVRYKDS--------TWISMLENRLRLARDLLS 535

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
             G+++V   Y+    +  ++  +       N+I  +++       G  +  A E+L++ 
Sbjct: 536 DKGSIFVRCDYNGNMYVRLLMNEIFGEENFRNEITIKRTEGKSRTEGLSYSIATESLLFY 595

Query: 156 SPSPKAKGYTFNYDALKAAN 175
           + S K      +       N
Sbjct: 596 AKSEKQYFMIPSRKTDFYKN 615


>gi|109946809|ref|YP_664037.1| type IIS restriction enzyme M1 protein fragment 1 [Helicobacter
           acinonychis str. Sheeba]
 gi|109714030|emb|CAJ99038.1| type IIS restriction enzyme M1 protein fragment 1 [Helicobacter
           acinonychis str. Sheeba]
          Length = 90

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 16/106 (15%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            +KI   +  + L+KL  KSVDL   DPPYNL++                 SWD F + E
Sbjct: 1   MNKIYIEDVFAFLDKLEDKSVDLAIIDPPYNLKIA----------------SWDSFKNDE 44

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
            +  F+ AW+      +K  G+ ++  +  N       L       
Sbjct: 45  EFLTFSYAWIDKMLPKIKDTGSFYIFNTPFNCALFLAYLCQKKCIF 90


>gi|210135555|ref|YP_002301994.1| type III R-M system methyltransferase [Helicobacter pylori P12]
 gi|210133523|gb|ACJ08514.1| type III R-M system methyltransferase [Helicobacter pylori P12]
          Length = 821

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 43/67 (64%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           ++    KPE+L++ IL  +T+  D++ D F GSGT+ AVA KL+R +IGIEM + +  + 
Sbjct: 641 EIFKNAKPESLIATILEHATQENDLVCDFFAGSGTTCAVAHKLKRKYIGIEMGEHFDSVI 700

Query: 262 TKRIASV 268
             R+  V
Sbjct: 701 LPRLKKV 707



 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 52/189 (27%), Gaps = 23/189 (12%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
           +N  S  E    +IK  +   L  L     +++D I+ DPPYN Q N  +Y  +      
Sbjct: 366 KNLFSEDEINGTLIKSENYQALNSLKNRYKEAIDCIYIDPPYNTQNNEFIYADNFKRSS- 424

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL------ 121
                        + A     L     +L   G ++V    +                  
Sbjct: 425 -------------WLAMMENRLELAHSLLNDKGVMFVSIDDNEQAYCKRSWTKSLMGGGG 471

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
               + D + +  +   + +          L +A             +     N D    
Sbjct: 472 GDNFVADFIRKTKSTTNDAKTGVNYQHEFLLCYAKNKEFVNLLGGEKNLENYKNPDNDPN 531

Query: 182 SDWLIPICS 190
             W+    S
Sbjct: 532 GAWINDNPS 540


>gi|170730167|ref|YP_001775600.1| methyltransferase [Xylella fastidiosa M12]
 gi|167964960|gb|ACA11970.1| methyltransferase [Xylella fastidiosa M12]
          Length = 526

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 60/318 (18%), Positives = 99/318 (31%), Gaps = 79/318 (24%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKL---PAKSVDLIFADPPYNLQLNGQLYR---------- 59
            +    W + II+G++   L  L      ++  I+ DPPYN      +Y           
Sbjct: 55  SHGAAPWLNLIIEGDNFDALRALCMTHRSAIRCIYIDPPYNTGNRDFVYNDCFIDKWLEF 114

Query: 60  ------------PDHSLVDAVTDSWDKFSSFEAYD------AFTRAWLLACRRVLKPNGT 101
                       PD  ++    D  + F      D       F   ++   R+  + +  
Sbjct: 115 IYRRLQLAKELLPDDGVIFVSIDDNELFRLGMLMDRVFGEQNFVANFIWNHRKSSQNDTD 174

Query: 102 LWVIGSYHNIF-RIGTML-----------------QNLNFW---------ILNDIVWRKS 134
           + +  +Y   + R                           W         I  ++ +   
Sbjct: 175 VSLAHNYTLCYARTRDRFSLNPLPVDADKFNNTDGDQRGPWVADPFDAPNIRKNLTYPIK 234

Query: 135 NPM-------PNFRGRRFQNAHET-------LIWASPSPKAKGYT-FNYDALKAANEDVQ 179
           NP        P  R  RF             +++         Y  F ++A         
Sbjct: 235 NPKSGKEFLPPQGRHWRFTEDRYLEALKEGRIVFGKHGTGKPQYKRFLFEAAGKGKNIFT 294

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
           + +D      +  E +   DGEK+  T KP +L+ RIL  +T     +LD F GSGT+  
Sbjct: 295 IWNDVGTATEATKELMAIFDGEKMFNTPKPVSLIERILSVTTDKEAWVLDFFAGSGTTAH 354

Query: 240 VAKKLR------RSFIGI 251
              KL       R FI I
Sbjct: 355 AVAKLNAEDGGHRRFILI 372


>gi|167855189|ref|ZP_02477959.1| putative DNA modification methylase [Haemophilus parasuis 29755]
 gi|167853642|gb|EDS24886.1| putative DNA modification methylase [Haemophilus parasuis 29755]
          Length = 289

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 44/115 (38%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
           YD     N+        L      SE+         HP       + +++   TK    +
Sbjct: 14  YDRRNTLNDLTGKEWLKLTASFWFSEKCAMDKDAMKHPAPYLIKDIEKLIKLFTKQKMTV 73

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
           LDPF GSGT+      L R  IG ++  DY ++A  RI  ++    +    L  +
Sbjct: 74  LDPFCGSGTTLLSCLNLGRKGIGFDLNNDYRELALSRIKKIKDFKELNELDLQYE 128



 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 62/159 (38%), Gaps = 27/159 (16%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYN--LQLNGQLYRPDHSL----------VDAVTDSWD 73
           GNS+ +++K+   S+D I   PPY+  L+   Q  R D +           V+  +D  D
Sbjct: 130 GNSLDLIKKIEHNSIDYIVTSPPYHNILKNKSQGIRTDKAYKGFRDGGRIGVEYYSDHID 189

Query: 74  KFSSFEAYDAF---TRAWLLACRRVLKPNGTLWVIGSYHNIFR--------IGTMLQNLN 122
              + + Y++F       ++   +VLK      ++ S   + +        I  M+Q + 
Sbjct: 190 DLGNCDNYESFIAKLSMLMVDAYKVLKYKKYCSIVISDFTVDKKEVNVQGDIIRMMQKIG 249

Query: 123 FWILNDIVWRKSN----PMPNFRGRRFQNAHETLIWASP 157
           F      +  ++N    P       +  + H+ +I    
Sbjct: 250 FEFSGTTILLQNNKPLYPFGYPYAYKINHHHQNIITFRK 288


>gi|323953705|gb|EGB49531.1| DNA methylase [Escherichia coli H263]
          Length = 201

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 117 VPYTDVWTHKPVQFYPGKHPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALG 176

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  IG+E++    +   + +  +
Sbjct: 177 RRAIGVELETGRFEQTVREVQDL 199


>gi|167826050|ref|ZP_02457521.1| DNA methylase [Burkholderia pseudomallei 9]
 gi|226198125|ref|ZP_03793696.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei
           Pakistan 9]
 gi|225929645|gb|EEH25661.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei
           Pakistan 9]
          Length = 160

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 63/173 (36%), Gaps = 24/173 (13%)

Query: 96  LKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
           +KP G L     +  +  +  ++Q     +    VW K+      R   F    E ++WA
Sbjct: 1   MKPGGLLVSFIDWRQLPTLTDVVQAAGLILRGVAVWDKTLGRMRLRRGGFAQQAEFVVWA 60

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
           S         +                   +P+             K H T+KP   ++R
Sbjct: 61  SRGAMRGCDVYLPGVFPC-----------RLPLP------------KQHVTEKPLD-IAR 96

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            +V     G ++ D F  SGT  A A++    ++G E  Q Y  I++ R+ + 
Sbjct: 97  EVVRLVPAGGVVCDLFAASGTFLAAAREAGLHWVGSESNQAYHAISSARLDAT 149


>gi|59711656|ref|YP_204432.1| putative DNA methylase [Vibrio fischeri ES114]
 gi|59479757|gb|AAW85544.1| putative DNA methylase [Vibrio fischeri ES114]
          Length = 285

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 43/93 (46%)

Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
           ++    +  N          +P          +     HP +KP  LL  I+ SS++ G 
Sbjct: 184 YDELKAEYENLRRPFHVTAEVPYTDVWTFAPVQYYPGKHPCEKPANLLEHIIASSSREGA 243

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           ++LD F GSG++G     L R F+GIEM+++  
Sbjct: 244 VVLDAFMGSGSTGKACLALNRKFVGIEMEEEMY 276


>gi|154249196|ref|YP_001410021.1| DNA methylase N-4/N-6 domain-containing protein [Fervidobacterium
           nodosum Rt17-B1]
 gi|154153132|gb|ABS60364.1| DNA methylase N-4/N-6 domain protein [Fervidobacterium nodosum
           Rt17-B1]
          Length = 846

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 73/191 (38%), Gaps = 10/191 (5%)

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
           +    I   +       + R+    H   IW              + L    E+ Q+ S+
Sbjct: 568 YGQEKIKQMEQEGRIRLKCRKCGYVHTNGIWRGCPNCGTVEDVKVEYLLPPTEEKQIDSN 627

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           W          +          T+  E LL R++ S++  GD+++D F GSGT+ AVA K
Sbjct: 628 WTD--------ISGYTSNWEFQTENSEILLKRVIESTSNEGDLVMDFFLGSGTTIAVAHK 679

Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGN--IELTVLTGKRTEPRVAFNLLVERGLIQP 301
           LRR +IG+EM + +  +   R+  V       I       ++     A        L Q 
Sbjct: 680 LRRKWIGVEMGEHFYTVVLPRMKKVLAYDKSGISKEKDVKEKYNEDNAGGFFKYYELEQY 739

Query: 302 GQILTNAQGNI 312
            ++L NA+   
Sbjct: 740 EEVLRNAKYEH 750



 Score = 36.5 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 60/179 (33%), Gaps = 18/179 (10%)

Query: 6   SLAINENQNSIFEWKDK-IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPD 61
            + I E  ++I E  D  +IK  +   L  +     + V  I+ DPP+N     +    D
Sbjct: 375 EVEILELFDNIDEELDGWLIKSENYQALNTILPKFKEKVQTIYIDPPFN-----KEQEAD 429

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
           +       D+         +           R ++   G+++V   Y+    +  +L ++
Sbjct: 430 YLYKVGYKDA--------TWITMLENRTRLGRDLMDEKGSIFVRCDYNGNAYLKMLLNDI 481

Query: 122 -NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
                  + +        + + +RF  A ++L   S S   K         K   E   
Sbjct: 482 FGKDNFRNEINVSRISKQDPKVKRFNTAADSLYLFSKSDNFKFNLILKKLSKKKEERWH 540


>gi|59801068|ref|YP_207780.1| putative type III restriction/modification system modification
           methylase [Neisseria gonorrhoeae FA 1090]
 gi|59717963|gb|AAW89368.1| putative type III restriction/modification system modification
           methylase [Neisseria gonorrhoeae FA 1090]
          Length = 756

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 2/63 (3%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRI 265
           +KPE+L+  I+  +T   DI+LD   GSGT+ AVA K+ R +IGIE + DYI+ +A +R+
Sbjct: 557 KKPESLIETIIKLATNENDIVLDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIETLAVERM 615

Query: 266 ASV 268
             V
Sbjct: 616 KKV 618



 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 57/147 (38%), Gaps = 23/147 (15%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  +  L       V LI+ DPPYN + +   Y              DKF S
Sbjct: 247 NLIIKGNNLIAMHSLAKQFKGKVKLIYIDPPYNTETDSFAY-------------NDKF-S 292

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN--LNFWILNDIVWRKSN 135
              +  F +  L   + +LK +G ++V         +  +L         +N I  + S 
Sbjct: 293 HSTWLTFMKNRLEIAKELLKDDGLIFVQCDDKEQAYLKVLLDETFTRENFINCIAVKMSE 352

Query: 136 P----MPNFRGRRFQNAHETLIWASPS 158
           P    M +   R  +     LI+ + +
Sbjct: 353 PSGNKMAHTSHRLPKIKEYILIYKNKN 379


>gi|300866569|ref|ZP_07111258.1| DNA methylase N-4/N-6 domain protein [Oscillatoria sp. PCC 6506]
 gi|300335433|emb|CBN56418.1| DNA methylase N-4/N-6 domain protein [Oscillatoria sp. PCC 6506]
          Length = 362

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 41/85 (48%)

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
              +   P         +     LH +  PE L    ++++     I+LDPF G+GT+  
Sbjct: 273 YHPNGSKPSDVWDILPEDTQKRTLHFSPYPEDLCKIPILATCPQAGIVLDPFAGTGTTNQ 332

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKR 264
           VA +L R  IGI++  +Y+ +A +R
Sbjct: 333 VAFQLGRRSIGIDISGEYLTVARER 357



 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 66/160 (41%), Gaps = 24/160 (15%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           ++G + ++L++ P  S+D +   PPY     G     +  +   + D W      + Y  
Sbjct: 35  LQGETYALLKQFPPNSIDCVITSPPY----WGHRVYINGGI--GLEDKW------QEYVK 82

Query: 84  FTRAWLLACRRVLKPNGTLW-VIGSYHNI-------FRIGTML-QNLNFWILNDIVWRKS 134
                    +R++KP G+ W  IG  +         +R+   +    N+ + N ++W K 
Sbjct: 83  NLLEIFDEVKRIIKPTGSFWLNIGDAYQQKSMVGLPWRVALAMIDQQNWILRNSVIWNKV 142

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
              P+    + +N +E +        A  Y ++ DA+++ 
Sbjct: 143 KGNPDNAKDKLRNIYEHVFHFVK---ADRYFYDVDAIRSK 179


>gi|294648628|ref|ZP_06726091.1| site-specific DNA-methyltransferase (adenine-specific)
           [Acinetobacter haemolyticus ATCC 19194]
 gi|292825504|gb|EFF84244.1| site-specific DNA-methyltransferase (adenine-specific)
           [Acinetobacter haemolyticus ATCC 19194]
          Length = 377

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/74 (48%), Positives = 49/74 (66%), Gaps = 3/74 (4%)

Query: 197 NKDGEKLHPT-QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
            K+G+ L P  +KPE LL +I+  +T  GDI+LD   GSGT+ AVA K+ R +IGIE + 
Sbjct: 180 TKEGDVLFPNGKKPEQLLKKIIELATDEGDIVLDYHLGSGTTCAVAHKMNRRWIGIE-QM 238

Query: 256 DYI-DIATKRIASV 268
           +YI DI  KR+  V
Sbjct: 239 NYIEDITLKRLTKV 252


>gi|207109652|ref|ZP_03243814.1| DNA methylase [Helicobacter pylori HPKX_438_CA4C1]
          Length = 169

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 65/190 (34%), Gaps = 30/190 (15%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           + ++I   +S+  L+KLP   +D++   PPYN  +N    +  +               +
Sbjct: 1   YLNQIYCKDSLEFLKKLPNNCIDIVLTSPPYNFGINYNATQDTN--------------LW 46

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLW-----VIGSY-HNIFRIGTMLQNLNFWILNDIVWR 132
           + Y     A    C RVLK  G +      +   Y      I     +       +I+W 
Sbjct: 47  QEYFNTLFAIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISKFFIDEGLIWKGEILWE 106

Query: 133 KSNPMPNFRGRRFQNAHETL-IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
           K+N         +   + T   W SP+     Y++ +  +   N   +      I I   
Sbjct: 107 KNN---------YNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNNLKKEGDKDSIDITDD 157

Query: 192 SERLRNKDGE 201
             +     G+
Sbjct: 158 EFKKVGFYGK 167


>gi|268599185|ref|ZP_06133352.1| LOW QUALITY PROTEIN: twin-arginine leader-binding protein DmsD
           [Neisseria gonorrhoeae MS11]
 gi|268583316|gb|EEZ47992.1| LOW QUALITY PROTEIN: twin-arginine leader-binding protein DmsD
           [Neisseria gonorrhoeae MS11]
          Length = 601

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 2/63 (3%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRI 265
           +KPE+L+  I+  +T   DI+LD   GSGT+ AVA K+ R +IGIE + DYI+ +A +R+
Sbjct: 402 KKPESLIETIIKLATNENDIVLDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIETLAVERM 460

Query: 266 ASV 268
             V
Sbjct: 461 KKV 463



 Score = 63.5 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 23/147 (15%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       V LI+ DPPYN + +   Y              DKF S
Sbjct: 92  NLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTETDSFAY-------------NDKF-S 137

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN--LNFWILNDIVWRKSN 135
              +  F +  L   + +LK +G ++V         +  +L         +N I  + S 
Sbjct: 138 HSTWLTFMKNRLEIAKELLKDDGLIFVQCDDKEQAYLKVLLDETFTRENFINCIAVKMSE 197

Query: 136 P----MPNFRGRRFQNAHETLIWASPS 158
           P    M +   R  +     LI+ + +
Sbjct: 198 PSGNKMAHTSHRLPKIKEYILIYKNKN 224


>gi|238544539|dbj|BAH60891.1| putative DNA-methyltransferase [Desulfotignum balticum]
          Length = 752

 Score = 79.6 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 46/76 (60%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +  +PTQKPE  + R++ +S+K GD+I D F GSGT+ AVA+KL R +I  ++ +  I  
Sbjct: 364 DTKYPTQKPEQFIERMVKTSSKKGDLIADFFCGSGTTAAVAEKLNRKWICSDLGKFAIHT 423

Query: 261 ATKRIASVQPLGNIEL 276
             KR+  VQ     E 
Sbjct: 424 TRKRMIGVQRGLKAEN 439



 Score = 73.5 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 92/209 (44%), Gaps = 27/209 (12%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPAKS----------VDLIFADPPYNLQ-------- 52
           +    +  W +K+I G++  +L  L   S          + LI+ DPP+++         
Sbjct: 79  QTGRQVTGWNNKLIWGDNKLILSSLKNGSLREEIEAQGGIKLIYIDPPFDVGADFSMDIE 138

Query: 53  LNGQLYRPDHSLVD--AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
           + G+      S+++  A  D+W K +  +++ +     L+  R +L  +G+++V   Y  
Sbjct: 139 IGGETLTKKPSVLEEIAYRDTWGKGA--DSFISMIYERLVLMRDLLAEDGSIYVHCDYRV 196

Query: 111 IFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
              +  +L  +      +N+IVWR+   + N   R+F ++ +++ + +    +  Y F  
Sbjct: 197 SAYMKLVLDEVFGASCFINEIVWRRRTGILNQS-RKFGSSTDSIYFYAK--NSDKYLFKQ 253

Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRN 197
             +  +++D  +++ ++     G     +
Sbjct: 254 QYIPYSDDDNYVKTKFVYKDSDGRRYRLH 282


>gi|312173963|emb|CBX82217.1| putative DNA adenine methylase [Erwinia amylovora ATCC BAA-2158]
          Length = 130

 Score = 79.6 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 42/92 (45%)

Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
            F+    +  N          +P                HP +KP  L+  I+ SST+PG
Sbjct: 29  QFDELRQQYENLRRPFSVTAEVPYTDVWTFKPVASYPGKHPCEKPAELMEHIITSSTRPG 88

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           D++ D F GSG +   A  L R+ IG+E++++
Sbjct: 89  DVVADFFMGSGATVKAALTLGRTAIGVELEEE 120


>gi|293611395|ref|ZP_06693691.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826267|gb|EFF84636.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 511

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 41/69 (59%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G +   T KPE L+++IL  +T   D++LD F GSGT+ AVA K+ R +IGIEM +    
Sbjct: 295 GSEAFSTPKPERLITQILKIATNSNDMVLDSFLGSGTTAAVAHKMSRRYIGIEMGEHAKT 354

Query: 260 IATKRIASV 268
               R+  V
Sbjct: 355 HVIPRLEKV 363



 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 55/142 (38%), Gaps = 20/142 (14%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + II+G+++  L+ L       V  IF DPPYN Q              +  + +D    
Sbjct: 39  NLIIQGDNLQALKALLPLYGGQVKCIFIDPPYNTQ--------------SAFEHYDDKLE 84

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSN 135
              + +     L   + +L  +G++W+    +    +  +   +      + +IVW+K  
Sbjct: 85  HAQWLSMMYPRLQLLKELLAEDGSIWITLDDNESHYLKVLCDEVFSRKNFVRNIVWQKKY 144

Query: 136 PMPNFRGRRFQNAHETLIWASP 157
            + N       ++H+ ++    
Sbjct: 145 TVANDSKG-IPDSHDHILVYRK 165


>gi|261496854|ref|ZP_05993223.1| DNA methylase N-4/N-6 [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261307471|gb|EEY08805.1| DNA methylase N-4/N-6 [Mannheimia haemolytica serotype A2 str.
           OVINE]
          Length = 411

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 39/68 (57%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           E      KPE L+  +L +ST+P D++LD F GSGT+ AVA K  R +IGIE+ +     
Sbjct: 264 EDSFDYPKPEKLIQFVLEASTEPYDLVLDSFLGSGTTAAVAHKTNRRYIGIEIGEHAKTH 323

Query: 261 ATKRIASV 268
              R+  V
Sbjct: 324 VVPRLKKV 331



 Score = 45.4 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 14/85 (16%)

Query: 37  AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
           A  V  IF DPPYN +              +    +D       + +     L   R +L
Sbjct: 5   AGQVKCIFIDPPYNTK--------------SAFTHYDDNLEHSVWLSMMYPRLEILRDLL 50

Query: 97  KPNGTLWVIGSYHNIFRIGTMLQNL 121
             +G++W+    +    +  ML  +
Sbjct: 51  AEDGSIWITLDDNESHYLKIMLDEI 75


>gi|115289030|gb|ABI85522.1| M.Hin1056ModP-2 [Haemophilus influenzae]
 gi|115289087|gb|ABI85561.1| M-Hin86orf1056P-2 [Haemophilus influenzae]
          Length = 717

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 5/109 (4%)

Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
           + G T NY+  +   +   +R +W          +  +        +K E L+S+I+ ++
Sbjct: 475 SWGKTDNYNNDEGLRK---IRGNWWEGFYLDMGNVGKEGSVDFKNGKKGERLISQIIKTA 531

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRIASV 268
           T   DI+LD   GSGT+ AVA K+ R +IGIE + DYI+ +A +R+  V
Sbjct: 532 TNENDIVLDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIETLAVERLKKV 579



 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 60/168 (35%), Gaps = 24/168 (14%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       + LI+ DPPYN   +G  Y              DKF +
Sbjct: 219 NLIIKGNNLIALHSLAKQFKGKIKLIYIDPPYNTGNDGFKY-------------NDKF-N 264

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSN 135
              +  F +  L   + +L  +G ++V    +    +  ++  +      +  I  + S 
Sbjct: 265 HSTWLTFMKNRLEIAKTLLADDGVIFVQCDDNEQAYLKILMDEVFGRENFVTTIHCQMST 324

Query: 136 PMPNFR-----GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
                      G   +NA   ++++    K       YD     +E  
Sbjct: 325 TQGMKVKAAQDGNIVKNAEYIIVFSKNGHKNIAINPLYDLRSEYDEHY 372


>gi|313668401|ref|YP_004048685.1| type III restriction-modification system modification protein
           [Neisseria lactamica ST-640]
 gi|313005863|emb|CBN87319.1| putative type III restriction-modification system modification
           protein [Neisseria lactamica 020-06]
          Length = 568

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 70/177 (39%), Gaps = 24/177 (13%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY 58
             K   A  EN  S    ++ +I G+++ VL+ L      SV +I+ DPPYN   +G +Y
Sbjct: 23  EDKTHNAKPENAGS----QNLLICGDNLEVLKHLKNAYTNSVKMIYIDPPYNTGSDGFVY 78

Query: 59  RPDHSLVDA---------------VTDSWDKFS-SFEAYDAFTRAWLLACRRVLKPNGTL 102
           + D     A               + D  DK S S  A+  F    L   R +L+ +G +
Sbjct: 79  QDDRKFTPAELARLANIDEDEAARILDFTDKGSNSHSAWLTFMYPRLYVARELLREDGVI 138

Query: 103 WVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
           ++    +   ++  +   +       + +  +    P    + F   H+ LI  + +
Sbjct: 139 FISIDDNEAAQLKLLCDEVFGEGNFVEQIIWEKKFSPQNDAKYFSENHDYLICYAKN 195



 Score = 63.1 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 45/127 (35%), Gaps = 31/127 (24%)

Query: 186 IPICSGSERLRNK----------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
           I I   +E   N+          DG+    T KP  L+ + L  +T P D+ILD F GSG
Sbjct: 301 ISIWKFNEVGHNQEASQELRKLFDGDSYFDTPKPIRLIVQTLRLTTNPDDLILDFFAGSG 360

Query: 236 TSGAVAKKLR-------RSFIGIEM--------------KQDYIDIATKRIASVQPLGNI 274
           T+     +L        R +I +++                   DI   RI         
Sbjct: 361 TTAHAVMQLNAEGQNGSRRYICVQLPEKTDEKSEARKAGYPTIFDITKARIEKAAAKIRA 420

Query: 275 ELTVLTG 281
           E    TG
Sbjct: 421 EHPDYTG 427


>gi|325953907|ref|YP_004237567.1| DNA methylase N-4/N-6 domain protein [Weeksella virosa DSM 16922]
 gi|323436525|gb|ADX66989.1| DNA methylase N-4/N-6 domain protein [Weeksella virosa DSM 16922]
          Length = 337

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 24/136 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+   ++  ++ KLP++S+D+I  DPPY    N +L R                     +
Sbjct: 3   KLYNCDNAELMAKLPSESIDVICTDPPYLYLKNQKLERV--------------------F 42

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           D   + +   C+R+L   G + + G   + +R  T+L +L F    +I+W KS+      
Sbjct: 43  DE--QKFFSECKRLLTKKGFIVLFGRGESFYRWNTILADLGFTFKEEIIWNKSHCTSPLM 100

Query: 142 GRRFQNAHETLIWASP 157
             R    HET+   + 
Sbjct: 101 --RLSRVHETISIFTK 114



 Score = 77.3 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 194 RLRNKDGEKLHPTQKPEALLSRIL-----VSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
           +        +HPTQKP  LL R+L      +  K   ++LDPF GS ++      +    
Sbjct: 249 KQVRDHYSAIHPTQKPVRLLERLLALVIPQNKDKEDIVVLDPFGGSFSTMEAVYNMGMKG 308

Query: 249 IGIEMKQDYIDIATKRIASVQPLG 272
           I  E+ ++Y +    RI ++QP+ 
Sbjct: 309 ISCEIDEEYFENGKNRIENLQPIQ 332


>gi|320527418|ref|ZP_08028599.1| DNA (cytosine-5-)-methyltransferase [Solobacterium moorei F0204]
 gi|320132131|gb|EFW24680.1| DNA (cytosine-5-)-methyltransferase [Solobacterium moorei F0204]
          Length = 541

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 37/60 (61%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           PEALL  IL   +  GD +LD F GSG++ AVA K+ R +IG+E+ +    +   RI +V
Sbjct: 342 PEALLKMILEYFSNEGDWVLDSFLGSGSTMAVAHKMNRKWIGVELGEHTYSLCKTRIDNV 401



 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 17/104 (16%)

Query: 21  DKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + +I G+++  L+ L  +    +  I+ DPPYN                +  + +D    
Sbjct: 40  NMLIHGDNLIALQALQQEFTGKIKCIYIDPPYNTG--------------SAFEYYDDGLE 85

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
              +       +     +L  +G L           +  +L  +
Sbjct: 86  HSEWLQMIYPRIQLLYELLADDGFLCCHIDDSESHYLKCVLDEV 129


>gi|254493898|ref|ZP_05107069.1| LOW QUALITY PROTEIN: twin-argninine leader-binding protein DmsD
           [Neisseria gonorrhoeae 1291]
 gi|226512938|gb|EEH62283.1| LOW QUALITY PROTEIN: twin-argninine leader-binding protein DmsD
           [Neisseria gonorrhoeae 1291]
          Length = 589

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 2/63 (3%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRI 265
           +KPE+L+  I+  +T   DI+LD   GSGT+ AVA K+ R +IGIE + DYI+ +A +R+
Sbjct: 390 KKPESLIETIIKLATNENDIVLDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIETLAVERM 448

Query: 266 ASV 268
             V
Sbjct: 449 KKV 451



 Score = 63.1 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 23/147 (15%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       V LI+ DPPYN + +   Y              DKF S
Sbjct: 80  NLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTETDSFAY-------------NDKF-S 125

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN--LNFWILNDIVWRKSN 135
              +  F +  L   + +LK +G ++V         +  +L         +N I  + S 
Sbjct: 126 HSTWLTFMKNRLEIAKELLKDDGLIFVQCDDKEQAYLKVLLDETFTRENFINCIAVKMSE 185

Query: 136 P----MPNFRGRRFQNAHETLIWASPS 158
           P    M +   R  +     LI+ + +
Sbjct: 186 PSGNKMAHTSHRLPKIKEYILIYKNKN 212


>gi|284048452|ref|YP_003398791.1| DNA methylase N-4/N-6 domain protein [Acidaminococcus fermentans
           DSM 20731]
 gi|283952673|gb|ADB47476.1| DNA methylase N-4/N-6 domain protein [Acidaminococcus fermentans
           DSM 20731]
          Length = 855

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 62/158 (39%), Gaps = 7/158 (4%)

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
              D+ I   +          +K++  Q P  +  R ++ ++ P D++LD   GSGT+  
Sbjct: 417 YYEDYPISRLNNLWTGIGAVNDKMYVVQTPNEIPKRCILMTSDPDDLVLDITCGSGTTAY 476

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQ----PLGNIELTVLTG--KRTEPRVAFNLL 293
           VA++  R +I  +  +  I++A +R+ +       L + +  + +G   +T P +     
Sbjct: 477 VAEQWGRRWITCDTSRVAIELAKERLMTASFDYYKLAHPDQGISSGFIYKTVPHITLKS- 535

Query: 294 VERGLIQPGQILTNAQGNISATVCADGTLISGTELGSI 331
           +        + L +        V   G     +    I
Sbjct: 536 IANNEPPAEETLYDQPEIDKTKVRVSGPFTVESLPAPI 573



 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 24/170 (14%)

Query: 18  EWKDKIIKGNSISVLEKLPAK-----SVDLIFADPPYNLQL-----------------NG 55
           +W +++I G+S+ V+  L  K      V + + DPPY ++                    
Sbjct: 137 DWTNRLIAGDSLVVMNSLLEKEGMAGQVQMCYIDPPYGIKYGSNFQPFVNDMSLKSGDKD 196

Query: 56  QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
           +    +  ++ A  D+W+      +Y  + R  +L    +LK +G++++  S  N+  + 
Sbjct: 197 EDLTQEPEMITAFRDTWE--LGIHSYLTYLRNRILLSYNLLKDSGSIFIQISDENVHFVR 254

Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
            +   +                  F  +   +A   L+W +       + 
Sbjct: 255 NICDEIFGPENFVSQISIKKGSVMFAKKLLNSATYYLVWYAKDKNKIKFH 304


>gi|167565743|ref|ZP_02358659.1| site-specific DNA methyltransferase [Burkholderia oklahomensis
           EO147]
          Length = 143

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 58/164 (35%), Gaps = 24/164 (14%)

Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
             +  ++Q     +    VW K+      R   F    E ++W                 
Sbjct: 2   PTLTDVVQAAGLILRGIAVWDKTPGRTRPRRGGFAQQAEFIVW----------------- 44

Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
             A+       D  +P          K     H T+KP   ++R +V     G ++ D F
Sbjct: 45  --ASRGAMRDCDVYLPGVFPVRLPLPKQ----HVTEKPLD-IAREVVRLVPVGGVVCDLF 97

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
            GSGT  A A++  R +IG E    Y  IA+ R+ +      ++
Sbjct: 98  AGSGTFLAAAREAGRHWIGCETNAAYHAIASARLDAAADDSAVQ 141


>gi|319897460|ref|YP_004135657.1| type iii restriction-modification system hindvip enzyme mod
           [Haemophilus influenzae F3031]
 gi|317432966|emb|CBY81333.1| putative type III restriction-modification system HindVIP enzyme
           mod [Haemophilus influenzae F3031]
          Length = 723

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 12/149 (8%)

Query: 131 WRKSNPMPNFRGRRFQNAH--ETLIWASPSPKAKGY---TFNYDALKAANEDVQMRSDWL 185
              + P+  +   +    H  E LI        +G      N       +++ +   D  
Sbjct: 438 RHHNIPVDIYEKSKIDREHIFEYLIGTEKHYAYRGRRLAFLNKTIKNCIDKNGEPTFDIS 497

Query: 186 IPICSGSE-----RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
             IC   +     +L ++ G +    +KPE ++  IL  +T   DI+LD   GSGT+ AV
Sbjct: 498 QAICDMWDFIKTSKLFSEGGVEFSNGKKPELIIKTILNLATNENDIVLDYHLGSGTTAAV 557

Query: 241 AKKLRRSFIGIEMKQDYID-IATKRIASV 268
           A K+ R +IGIE + DYI+ +A +R+  V
Sbjct: 558 AHKMNRQYIGIE-QMDYIETLAVERLKKV 585



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 64/185 (34%), Gaps = 22/185 (11%)

Query: 21  DKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L  +    V LI+ DPPYN   +   Y              DKF S
Sbjct: 227 NLIIKGNNLIALHSLAKQFKGRVKLIYIDPPYNTGEDSFKY-------------NDKF-S 272

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSN 135
              +  F +  L+  + +LK +G ++V         +   +  +      +N I  + S 
Sbjct: 273 HSTWLTFMKNRLVIAKELLKDDGLIFVQCDDKEQAYLKVFMDEVFGRENFINTIAVKMST 332

Query: 136 PMPNFR---GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
           P         ++     E +I  + +      T  Y+     + +               
Sbjct: 333 PSGVKMSHVSKKIIKVKEHIICFAKNKDLIELTPQYEIKDEYDWEYGFFIQKNNSENVFD 392

Query: 193 ERLRN 197
            R+ N
Sbjct: 393 WRVEN 397


>gi|194337015|ref|YP_002018809.1| DNA methylase N-4/N-6 domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309492|gb|ACF44192.1| DNA methylase N-4/N-6 domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 547

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 42/70 (60%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           + E +  T KPE L+ RI+  +++ GD++LD F GSGT+ AV  K+ R +IGIE+ +   
Sbjct: 295 NSENVFATPKPEKLVYRIMALASREGDLVLDSFLGSGTTAAVVHKMGRKWIGIELGEHAK 354

Query: 259 DIATKRIASV 268
                R+  V
Sbjct: 355 THCYSRLKQV 364



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 61/193 (31%), Gaps = 18/193 (9%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + +I+G+++  L+ L    A  V  I+ DPPYN                   + +D    
Sbjct: 40  NMLIQGDNLLALKALEQDYAGKVKCIYIDPPYNTG--------------NAFEHYDDGIE 85

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNP 136
              +       L   R +L  +G++W+         +  +   +       + V  +   
Sbjct: 86  HSQWLNLMAPRLKILRDLLANDGSIWISIDDDESHYLKVLCDEIFGRRNFVNNVIWEKKY 145

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
            P    +   ++H+ ++  + + +           +         +D      S    ++
Sbjct: 146 SPQNDAKWLSDSHDHILVYAKNKEIWRPYLLPRTEEMDKRYKNYDNDLRGLWKSSDLSVK 205

Query: 197 NKDGEKLHPTQKP 209
                  +P Q P
Sbjct: 206 TYSSSTDYPIQIP 218


>gi|295092254|emb|CBK78361.1| Adenine specific DNA methylase Mod [Clostridium cf. saccharolyticum
           K10]
          Length = 673

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 43/74 (58%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            RN+ G  +   +KPE LL   L   +  GD+ILD F GSGT+ AVA K+ R +I  E  
Sbjct: 467 CRNEGGVDIEGGKKPEQLLKFFLDYFSNEGDLILDFFGGSGTTAAVAHKMNRRYITCEQM 526

Query: 255 QDYIDIATKRIASV 268
            + I++   R++SV
Sbjct: 527 DNQIEMIKSRLSSV 540



 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 37/104 (35%), Gaps = 16/104 (15%)

Query: 21  DKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + +IKGN++  L  L       V  I+ DPPYN                     ++   +
Sbjct: 174 NIVIKGNNLLSLATLMRNYEGMVKCIYIDPPYNTGKKNSFG-------------YNDSFN 220

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
              + +F +  L   +R+L  +G + +         +  +   +
Sbjct: 221 HSTWLSFMKTRLEYAKRLLTRDGCILIQTDDKEQAYLKVLCDEI 264


>gi|261345409|ref|ZP_05973053.1| DNA (cytosine-5-)-methyltransferase [Providencia rustigianii DSM
           4541]
 gi|282566453|gb|EFB71988.1| DNA (cytosine-5-)-methyltransferase [Providencia rustigianii DSM
           4541]
          Length = 350

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 17/122 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAY 81
           ++  +S+S ++ LP   +DLI  DPPY                   T SWD ++ +  AY
Sbjct: 12  LVNEDSLSYIKTLPDNCIDLIATDPPYF---------------QVKTCSWDNQWENVTAY 56

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            ++    L    RVLKPNG+L++            +L+   F +LN I+W K +      
Sbjct: 57  LSWLDDMLAEFWRVLKPNGSLYMFCGSKLAADTELLLRE-RFNVLNHIIWAKPSGPWRRA 115

Query: 142 GR 143
            +
Sbjct: 116 CK 117



 Score = 77.3 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 40/83 (48%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  ++  I+ SST+ GD++ D F GSG +   A KL 
Sbjct: 264 VPYTDVWTYSPVQYYPGKHPCEKPAVMMEHIINSSTREGDVVADFFMGSGATVKAALKLN 323

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  IG+E++ +  +     I  V
Sbjct: 324 RRVIGVELETERFEQTVLEINEV 346


>gi|170694682|ref|ZP_02885833.1| DNA methylase N-4/N-6 domain protein [Burkholderia graminis C4D1M]
 gi|170140313|gb|EDT08490.1| DNA methylase N-4/N-6 domain protein [Burkholderia graminis C4D1M]
          Length = 661

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 79/207 (38%), Gaps = 18/207 (8%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           +         ++ II+G++   L  L A     + +I+ DPPYN          D    D
Sbjct: 63  SHTPTGTNHHRNLIIEGDNFDSLRLLRATHAGKIRVIYIDPPYNTGNK------DWVYND 116

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
               + D++   + +  F    L   R +L  +G + V  +  N  R+  ++  +     
Sbjct: 117 KFVGANDRWRHSQ-WLEFLYQRLTLARDLLTSDGVILVSINDENRSRLELLMDEVFPRRR 175

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA---LKAANEDVQMRSD 183
              +  ++    N   +RF + HE ++  + +    G+ FN  A    K  N D   R D
Sbjct: 176 AGSLVWRTKDTGNDLSQRFSHVHEHVLVYANA----GFKFNGRATSKHKFRNPDKDSRGD 231

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPE 210
           W  P    + +   +     +P Q PE
Sbjct: 232 WS-PQPLTANKTLVERPNTYYPIQNPE 257



 Score = 60.4 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 65/169 (38%), Gaps = 37/169 (21%)

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------ 245
           ++ ++N  G K  P  KP +L+  +L  +T PGDI+LD F GSGT+G    +L       
Sbjct: 421 TDEVKNILGSKAFPYPKPISLIKGLLAQATTPGDIVLDFFAGSGTTGQAVLELNAEDGGQ 480

Query: 246 RSFIGI--------EMKQDYI-DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
           R FI          E  ++   D+  +R+  V          + G R +P  +     E 
Sbjct: 481 RRFILCSSTEATTKEPAKNLCRDVCAERLRRV----------MIGYRDKPGYSVAQGGEF 530

Query: 297 GLIQ-----PGQILTNAQGNISATVC-----ADGTLISGTELGSIHRVG 335
             +Q        I  + +   + ++      A   +        IH + 
Sbjct: 531 AYLQLDKIEAADIAFDGKAQHAVSLLCMREAAIAPISVEDA--EIHLIA 577


>gi|206599599|ref|YP_002242038.1| gp55 [Mycobacterium phage Brujita]
 gi|206282748|gb|ACI06269.1| gp55 [Mycobacterium phage Brujita]
 gi|302858490|gb|ADL71237.1| gp55 [Mycobacterium phage island3]
          Length = 216

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 81/254 (31%), Gaps = 63/254 (24%)

Query: 22  KIIKGNSISVLEKLPA--KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            +  G+   +        ++  L+  DPPY +    +     H  +   +D         
Sbjct: 11  TLYHGDCREI-----DAWEAAHLLLTDPPYGIDWPPRTGTSRHQSIANDSD--------- 56

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                      A R         +VIG +                    +        P 
Sbjct: 57  ----------TAARD--------YVIGRW------------------GHVKPAYVFGSPL 80

Query: 140 FRGRRFQNAHETLIWASP-----SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
                      TL+W  P     + +  G+  +++A+       +        I + +  
Sbjct: 81  LAPPYGTKQ--TLVWRKPGDSGLTGQIGGWRRDWEAIYMLGNWPRDSRPLRSGIITTNVG 138

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           +        H   KP ALL    +    PG  + DPF GSG++   A+ + R  IG+E +
Sbjct: 139 MSTYQH--GHAHGKPVALLEV--LLLAAPGGAVADPFAGSGSTLLAARNVGRKAIGVEYE 194

Query: 255 QDYIDIATKRIASV 268
           + Y +I  +R+  +
Sbjct: 195 ERYCEIIARRLDQM 208


>gi|17228785|ref|NP_485333.1| PvuII DNA methyltransferase [Nostoc sp. PCC 7120]
 gi|17130637|dbj|BAB73247.1| PvuII DNA methyltransferase [Nostoc sp. PCC 7120]
          Length = 200

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 40/74 (54%)

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           R     G K HP + P+      +   T  GD++LDPF GS T+G VA+  +R +I +E+
Sbjct: 127 RRCKAAGVKPHPARFPQGFAEFFIKFLTDEGDLVLDPFAGSNTTGFVAETWQRRWIAVEI 186

Query: 254 KQDYIDIATKRIAS 267
            QDY+  +  R + 
Sbjct: 187 NQDYVLGSRYRFSE 200


>gi|291570624|dbj|BAI92896.1| putative DNA methyltransferase [Arthrospira platensis NIES-39]
          Length = 362

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 43/91 (47%)

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
               + W       +ER++  +G+ +H  QKP  L+  I+ +S++  D+I +PF G  ++
Sbjct: 265 HGFTNVWQRSALRNNERIKTPNGKAVHLNQKPLDLMQLIIQASSQEQDVIWEPFGGLFSA 324

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
              A  L R     E+ + Y     KR + V
Sbjct: 325 SLAANILNRKAFACEIDETYFYYGVKRFSQV 355


>gi|329124207|ref|ZP_08252754.1| type III restriction/modification enzyme [Haemophilus aegyptius
           ATCC 11116]
 gi|327467632|gb|EGF13130.1| type III restriction/modification enzyme [Haemophilus aegyptius
           ATCC 11116]
          Length = 486

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 2/63 (3%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRI 265
           +KPE+L+  I+  +T   DI+LD   GSGT+ AVA K+ R +IGIE + DYI+ +A +R+
Sbjct: 287 KKPESLIETIIKLATNESDIVLDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIETLAVERL 345

Query: 266 ASV 268
             V
Sbjct: 346 KKV 348



 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 20/123 (16%)

Query: 42  LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
           +I+ DPPYN   +   Y              DKF S   +  F +  L   + +L  +G 
Sbjct: 1   MIYIDPPYNTGEDSFKY-------------NDKF-SHSTWLTFMKNRLEIAKTLLADDGV 46

Query: 102 LWVIGSYHNIFRIGTMLQN--LNFWILNDIVWRKSNP----MPNFRGRRFQNAHETLIWA 155
           ++V         +  +L         +N I  + S P    M +   R  +     LI+ 
Sbjct: 47  IFVQCDDKEQAYLKVLLDETFTRENFINCIAVKMSEPSGNKMAHTSHRLPKIKEYILIYK 106

Query: 156 SPS 158
           + +
Sbjct: 107 NKN 109


>gi|284054872|ref|ZP_06385082.1| adenine DNA methyltransferase [Arthrospira platensis str. Paraca]
          Length = 374

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 43/91 (47%)

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
               + W       +ER++  +G+ +H  QKP  L+  I+ +S++  D+I +PF G  ++
Sbjct: 277 HGFTNVWQRSALRNNERIKTPNGKAVHLNQKPLDLMQLIIQASSQEQDVIWEPFGGLFSA 336

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
              A  L R     E+ + Y     KR + V
Sbjct: 337 SLAANILNRKAFACEIDETYFYYGVKRFSQV 367


>gi|311766116|emb|CBW29403.1| unnamed protein product [Haemophilus influenzae 10810]
          Length = 446

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 5/109 (4%)

Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
           + G T NY+  +   +   +R +W          +  +        +K E L+S+I+ ++
Sbjct: 204 SWGKTDNYNNDEGLRK---IRGNWWEGFYLDMGNVGKEGSVDFKNGKKGERLISQIIKTA 260

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRIASV 268
           T   DI+LD   GSGT+ AVA K+ R +IGIE + DYI+ +A +R+  V
Sbjct: 261 TNESDIVLDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIETLAVERLKKV 308


>gi|194098835|ref|YP_002001898.1| Twin-argninine leader-binding protein DmsD [Neisseria gonorrhoeae
           NCCP11945]
 gi|193934125|gb|ACF29949.1| Twin-argninine leader-binding protein DmsD [Neisseria gonorrhoeae
           NCCP11945]
          Length = 457

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 2/63 (3%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRI 265
           +KPE+L+  I+  +T   DI+LD   GSGT+ AVA K+ R +IGIE + DYI+ +A +R+
Sbjct: 258 KKPESLIETIIKLATNENDIVLDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIETLAVERM 316

Query: 266 ASV 268
             V
Sbjct: 317 KKV 319


>gi|323956953|gb|EGB52681.1| DNA methylase [Escherichia coli H263]
          Length = 172

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 85  VPYTDVWTHKPVQYYPGKHPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALG 144

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R   G+E++ +  +   + +  +
Sbjct: 145 RRATGVELETERFEQTVREVQDL 167


>gi|301027609|ref|ZP_07190931.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 196-1]
 gi|299879262|gb|EFI87473.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 196-1]
          Length = 112

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 25  VPYTDVWTHKPVQFYPGKHPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAALALG 84

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R   G+E++ +  +   + +  +
Sbjct: 85  RRATGVELETERFEQTVREVQDL 107


>gi|259908710|ref|YP_002649066.1| Phage DNA adenine-methylase [Erwinia pyrifoliae Ep1/96]
 gi|224964332|emb|CAX55841.1| Phage DNA adenine-methylase [Erwinia pyrifoliae Ep1/96]
 gi|283478684|emb|CAY74600.1| putative phage DNA methylase [Erwinia pyrifoliae DSM 12163]
          Length = 352

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 38/71 (53%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P                HP +KP  L+  I+ SS++PGD++ D F GSG +   A K  
Sbjct: 272 VPYTDVWTFRPVASYAGKHPCEKPAELMEHIITSSSRPGDVVADFFMGSGATVKAALKHG 331

Query: 246 RSFIGIEMKQD 256
           RS IG+E++++
Sbjct: 332 RSAIGVELEEE 342



 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 17/123 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           +++  +S+  ++ LP  SVDLI  DPPY        YR  +        +WD ++ +   
Sbjct: 11  ELVNADSLVYIKTLPDNSVDLIATDPPY--------YRVKN-------CAWDRQWDTVTD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y A+   +L    RVLKP+G+L++            +++     +L+ I W K +     
Sbjct: 56  YLAWLDEFLAEFWRVLKPSGSLYLFCGSKLAADTEILVRQ-RMQVLSAITWAKPHGAWLR 114

Query: 141 RGR 143
           + +
Sbjct: 115 QNK 117


>gi|290971699|ref|XP_002668621.1| predicted protein [Naegleria gruberi]
 gi|284082098|gb|EFC35877.1| predicted protein [Naegleria gruberi]
          Length = 994

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 83/247 (33%), Gaps = 36/247 (14%)

Query: 23  IIKGNSISVLEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++ G+ + +    P K S DL+  D PY +                     D        
Sbjct: 684 LLYGDVLELANIFPKKVSYDLMICDLPYGV-------------------FKDSPYDVLFT 724

Query: 82  DAFTRAWLLACRRVLKPNG--TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           D   + ++    ++       T    G Y  I ++  +++       N ++         
Sbjct: 725 DDQLKEFIDNLYQITPDTNFPTWIFFGEYKQIVKLQELIE---LKKGNAVICIWVKNGRQ 781

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           F        +E+ +   P+ +                     S + I   S +  L++ +
Sbjct: 782 FGANFGTYKYESFLLCFPNKQVNI-----------KPQGFSLSPFSICFPSETNFLKDSN 830

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
             + +  QKP +L+S ++   +    I+LD   G+ T+   A    R+ I +E      +
Sbjct: 831 SRECNKGQKPLSLISWLVYQFSNVDGIVLDLCSGTATTAVAAVSYGRNSISLESNHGQFE 890

Query: 260 IATKRIA 266
            A +R+ 
Sbjct: 891 HAAERLK 897


>gi|296119315|ref|ZP_06837883.1| adenine specific DNA methylase Mod [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295967707|gb|EFG80964.1| adenine specific DNA methylase Mod [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 639

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 43/79 (54%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
            G++++            KPE LL  IL  ST+PGD++LD F GSGT+ AVA K+ R +I
Sbjct: 437 KGNQQIDELFSRDEFSYAKPEELLEAILTVSTQPGDLVLDFFLGSGTTAAVAHKMGRRYI 496

Query: 250 GIEMKQDYIDIATKRIASV 268
           G+E       +   R+  V
Sbjct: 497 GVEQMDYTSTVTVPRLVKV 515



 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 13/110 (11%)

Query: 15  SIFEWKDKIIKGNSISVLEKL---PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
            + +  + I+KGN++  L  L       +  I+ DPPY  Q        +    D  T +
Sbjct: 167 ELADDDNLIVKGNNLLALSSLVERYEGKIKCIYIDPPYFFQ--------NRRGEDTFTYN 218

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
            D   S   +  F +  L   +R+L  +GTLW+      +  +  M  ++
Sbjct: 219 SDFHLS--TWLTFMKTRLEFAKRLLHRDGTLWISIGEDGMHYLKVMADSV 266


>gi|209524026|ref|ZP_03272577.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
 gi|209495401|gb|EDZ95705.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
          Length = 374

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 43/91 (47%)

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
               + W       +ER++  +G+ +H  QKP  L+  I+ +S++  D+I +PF G  ++
Sbjct: 277 HGFTNVWQRSALRNNERIKTPNGKAVHLNQKPLDLMQLIIEASSQERDVIWEPFGGLFSA 336

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
              A  L R     E+ + Y     KR + V
Sbjct: 337 SLAANILNRKAFACEIDETYFYYGVKRFSQV 367


>gi|322691068|ref|YP_004220638.1| phage DNA methylase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320455924|dbj|BAJ66546.1| putative phage DNA methylase [Bifidobacterium longum subsp. longum
           JCM 1217]
          Length = 407

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 1/111 (0%)

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
           +      G T             +    +     +G       DG + HPT KP  L+  
Sbjct: 290 TKPGDGWGMTHTGAEYDDMGGASRFYPVFRYCPKAGPGERPTVDGIR-HPTVKPLELMRW 348

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           ++   T P  ++L+PF GSG +    +      +  EM  DY+ +  +R+A
Sbjct: 349 LVRLVTPPDGLVLEPFAGSGATLEACRVENMRCVAAEMDSDYVRLIARRMA 399



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 19/128 (14%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            + + +++ G+   ++  LP  SV  +  DPPY +      +                  
Sbjct: 4   DDGRIRLMPGDCRDLIAMLPDNSVASVVTDPPYEIGFMNLGFDSTG-------------- 49

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
                 AF         RVLKP G +   G+     R+   +++  F I + I W  ++ 
Sbjct: 50  -----IAFDVILWKDILRVLKPGGHVAAFGASRTYHRLACAIEDAGFEIRDQIDWVYASG 104

Query: 137 MPNFRGRR 144
           MP+    R
Sbjct: 105 MPHGSDAR 112


>gi|260581888|ref|ZP_05849684.1| twin-argninine leader-binding protein DmsD [Haemophilus influenzae
           NT127]
 gi|260095081|gb|EEW78973.1| twin-argninine leader-binding protein DmsD [Haemophilus influenzae
           NT127]
          Length = 752

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/100 (39%), Positives = 53/100 (53%), Gaps = 4/100 (4%)

Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
           A    N  + +   W     +G   +  + G      +KPE LL  IL  +TK GDIILD
Sbjct: 523 AFAEINSSIYIGDIWFKITTTGG--VAQEGGVNFTNGKKPEQLLKIILDCATKKGDIILD 580

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRIASV 268
              GSGT+ AVA K+ R +IGIE + DYI  +A +R+  V
Sbjct: 581 FHLGSGTTAAVAHKMNRQYIGIE-QMDYIKTLAVERLKKV 619



 Score = 66.9 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 67/177 (37%), Gaps = 28/177 (15%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       V LI+ DPPYN   +G  Y              DKF +
Sbjct: 231 NLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTGNDGFKY-------------NDKF-N 276

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSN 135
              +  F +  L   + +L  +G ++V    +    +  ++  +      +N I+   SN
Sbjct: 277 HSTWLTFMKNRLEIAKTLLADDGVIFVQCDDNEQAYLKILMDEIFERENFINTIIPEMSN 336

Query: 136 PMPNF-----RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
              N      +G++F    E ++  +          N    K A E      + +IP
Sbjct: 337 ASGNKIKHAIKGKKFPKLKEYILLYAKDKN----QINLTIPKQAKEKWDKEYNQIIP 389


>gi|326346320|gb|EGD70057.1| putative DNA methylase [Escherichia coli O157:H7 str. 1125]
          Length = 92

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 5   VPYTDVWTYKPVQYYPGKHPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALG 64

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R   G+E++ +  +   + +  +
Sbjct: 65  RRATGVELETERFEQTVREVQDL 87


>gi|260664656|ref|ZP_05865508.1| DNA methylase [Lactobacillus jensenii SJ-7A-US]
 gi|260561721|gb|EEX27693.1| DNA methylase [Lactobacillus jensenii SJ-7A-US]
          Length = 480

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           +  +N+ G      +KPE LL RI+   T  GDI+LD F GS T+ AVA KL R FIG+E
Sbjct: 275 QNTQNQGGVSFTNAKKPEQLLKRIINLCTNEGDIVLDCFMGSATTQAVALKLNRQFIGVE 334

Query: 253 MKQDYID-IATKRIASV 268
            + DYI+ I+  R+  V
Sbjct: 335 -QMDYINTISVPRLQKV 350



 Score = 43.1 bits (100), Expect = 0.065,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 66/183 (36%), Gaps = 22/183 (12%)

Query: 23  IIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           IIKGN++  L  L  +    + LI+ DPP+N +             +      D+F +  
Sbjct: 2   IIKGNNLIALYSLVDRYASKIKLIYLDPPFNTK-------------NGDFPYNDRF-NHS 47

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            +  F +  +   R++LK +G +++   +     +  +L     + + + V   S    +
Sbjct: 48  TWLTFMKNRIDVARKLLKEDGLIFIEIDHLEEAYLKVLLDM--SFGIQNYVATISVKSNS 105

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
             G +  +  +T++    +  +     N       N     +  W         +    +
Sbjct: 106 ISGSKTSHKGKTIL---KNYDSILVYKNGAENIKINPQYTPKEKWDTHYSFYLRKNSKNE 162

Query: 200 GEK 202
            EK
Sbjct: 163 LEK 165


>gi|192359023|ref|YP_001984102.1| putative DNA methylase [Cellvibrio japonicus Ueda107]
 gi|190685188|gb|ACE82866.1| possible DNA methylase [Cellvibrio japonicus Ueda107]
          Length = 1004

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 45/82 (54%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           + + +       G+K++  Q    L+ R ++ +T PGD++LDP  GSGT+  VA++  R 
Sbjct: 466 VWTDAVGQNQFGGDKIYVVQTANKLIERCVLMTTDPGDLVLDPTCGSGTTAYVAEQWGRR 525

Query: 248 FIGIEMKQDYIDIATKRIASVQ 269
           +I I+  +  + +A  RI   +
Sbjct: 526 WITIDTSRVALALARARIMGAR 547



 Score = 69.6 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 65/170 (38%), Gaps = 26/170 (15%)

Query: 19  WKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSL--------- 64
           W++++I G+S+ V+  L         V  I+ DPPY ++ N        S          
Sbjct: 179 WQNRMILGDSLQVMASLAEREQLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGNASH 238

Query: 65  -------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
                  V A  D+W       +Y  + R  L   R +L  +G+++V     N+ R+  +
Sbjct: 239 ITREPEQVKAFRDTW--RDGIHSYLTYLRDRLTVARDLLTESGSIFVQIGDENVHRVRAV 296

Query: 118 LQNLN---FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
           +  +     +I++ +  + +        +      + LIW +   +   Y
Sbjct: 297 MDEVFGEENFIVSIVAQKTTGAGSPGELKALPGVADHLIWYARKAEVLKY 346


>gi|238855822|ref|ZP_04646112.1| twin-argninine leader-binding protein DmsD [Lactobacillus jensenii
           269-3]
 gi|282931511|ref|ZP_06337013.1| putative type III restriction-modification system HindVIP enzyme
           mod [Lactobacillus jensenii 208-1]
 gi|238831559|gb|EEQ23906.1| twin-argninine leader-binding protein DmsD [Lactobacillus jensenii
           269-3]
 gi|281304363|gb|EFA96463.1| putative type III restriction-modification system HindVIP enzyme
           mod [Lactobacillus jensenii 208-1]
          Length = 480

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           +  +N+ G      +KPE LL RI+   T  GDI+LD F GS T+ AVA KL R FIG+E
Sbjct: 275 QNTQNQGGVSFTNAKKPEQLLKRIINLCTNEGDIVLDCFMGSATTQAVALKLNRQFIGVE 334

Query: 253 MKQDYID-IATKRIASV 268
            + DYI+ I+  R+  V
Sbjct: 335 -QMDYINTISVPRLQKV 350



 Score = 43.4 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 66/183 (36%), Gaps = 22/183 (12%)

Query: 23  IIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           IIKGN++  L  L  +    + LI+ DPP+N +             +      D+F +  
Sbjct: 2   IIKGNNLIALYSLVDRYASKIKLIYLDPPFNTK-------------NGDFPYNDRF-NHS 47

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            +  F +  +   R++LK +G +++   +     +  +L     + + + V   S    +
Sbjct: 48  TWLTFMKNRIDVARKLLKEDGLIFIEIDHLEEAYLKVLLDM--SFGIQNYVATISVKSNS 105

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
             G +  +  +T++    +  +     N       N     +  W         +    +
Sbjct: 106 ISGSKTSHKGKTIL---KNYDSILVYKNGAENIKINPQYTPKEKWDTHYSFYLRKNSKNE 162

Query: 200 GEK 202
            EK
Sbjct: 163 LEK 165


>gi|261400646|ref|ZP_05986771.1| type III restriction-modification system EcoP15I, modification
           subunit [Neisseria lactamica ATCC 23970]
 gi|269209553|gb|EEZ76008.1| type III restriction-modification system EcoP15I, modification
           subunit [Neisseria lactamica ATCC 23970]
          Length = 568

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 69/177 (38%), Gaps = 24/177 (13%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY 58
             K   A  EN  S    ++ +I+G+++ VL+ L      SV +I+ DPPYN   +G +Y
Sbjct: 23  EDKTHNAKPENAGS----QNLLIRGDNLEVLKHLKNAYANSVKMIYIDPPYNTGSDGFVY 78

Query: 59  RPDHS--------LVDAVTDSWDKFSSF--------EAYDAFTRAWLLACRRVLKPNGTL 102
           + D          L +   D   +   F         A+  F    L   R +LK +G +
Sbjct: 79  QDDRKFTPEELARLANIDEDEAARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVI 138

Query: 103 WVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
           ++    +   ++  +   +       + +  +    P    + F   H+ LI  + +
Sbjct: 139 FISIDDNEAAQLKLLCDEVFGEGNFVEQIIWEKKFSPQNDAKYFSENHDYLICYAKN 195



 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 44/127 (34%), Gaps = 31/127 (24%)

Query: 186 IPICSGSERLRNK----------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
           I I   +E   N+          DG+    T KP  L+ + L  +T   D+ILD F GSG
Sbjct: 301 ISIWKFNEVGHNQEASQELRKLFDGDSYFDTPKPIRLIVQTLRLTTNSDDLILDFFAGSG 360

Query: 236 TSGAVAKKLR-------RSFIGIEM--------------KQDYIDIATKRIASVQPLGNI 274
           T+     +L        R +I +++                   DI   RI         
Sbjct: 361 TTAHAVMQLNAEEQNGSRRYICVQLPEKTDEKSEARKAGYPTIFDITKARIEKAAAKIRA 420

Query: 275 ELTVLTG 281
           E    TG
Sbjct: 421 EYPDYTG 427


>gi|240016412|ref|ZP_04722952.1| putative type III restriction/modification system modification
           methylase [Neisseria gonorrhoeae FA6140]
 gi|240113100|ref|ZP_04727590.1| putative type III restriction/modification system modification
           methylase [Neisseria gonorrhoeae MS11]
          Length = 486

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 2/63 (3%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRI 265
           +KPE+L+  I+  +T   DI+LD   GSGT+ AVA K+ R +IGIE + DYI+ +A +R+
Sbjct: 287 KKPESLIETIIKLATNENDIVLDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIETLAVERM 345

Query: 266 ASV 268
             V
Sbjct: 346 KKV 348



 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 20/123 (16%)

Query: 42  LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
           +I+ DPPYN + +   Y              DKF S   +  F +  L   + +LK +G 
Sbjct: 1   MIYIDPPYNTETDSFAY-------------NDKF-SHSTWLTFMKNRLEIAKELLKDDGL 46

Query: 102 LWVIGSYHNIFRIGTMLQN--LNFWILNDIVWRKSNP----MPNFRGRRFQNAHETLIWA 155
           ++V         +  +L         +N I  + S P    M +   R  +     LI+ 
Sbjct: 47  IFVQCDDKEQAYLKVLLDETFTRENFINCIAVKMSEPSGNKMAHTSHRLPKIKEYILIYK 106

Query: 156 SPS 158
           + +
Sbjct: 107 NKN 109


>gi|186682864|ref|YP_001866060.1| DNA methylase N-4/N-6 domain-containing protein [Nostoc punctiforme
           PCC 73102]
 gi|186465316|gb|ACC81117.1| DNA methylase N-4/N-6 domain protein [Nostoc punctiforme PCC 73102]
          Length = 355

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 60/147 (40%), Gaps = 21/147 (14%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           ++ +S ++L+  PA  +D +   PPY     GQ    +  +   + + W      E Y  
Sbjct: 28  LQADSYALLKLFPADCIDCVITSPPY----WGQRAYINGGI--GLEEKW------EDYIN 75

Query: 84  FTRAWLLACRRVLKPNGTLW-VIGSYHN-------IFRIGTMLQNL-NFWILNDIVWRKS 134
                    +R+LKP+G+ W  +G  +         +R+   + +   + + N ++W K 
Sbjct: 76  NLLGIFCEVKRILKPSGSFWLNLGDTYQRKSLIGIPWRVALAMSDKQGWILRNSVIWNKV 135

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKA 161
              P+    + +N +E +     + + 
Sbjct: 136 KGAPDNAKDKLRNVYEPVFHFVKTDRY 162



 Score = 77.3 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 60/149 (40%), Gaps = 9/149 (6%)

Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
             L+ L   +    + + S+     RG++     ++   +  + +     F +       
Sbjct: 211 NALKALGEILQEVRLGKLSDFRMIIRGQQRTTHSDSAKVSGRARELTERGFYFLKYHPNG 270

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
                  D L           +    KLH    PE +    ++++     ++LDPF G+G
Sbjct: 271 SKPSDVWDIL---------PEDTQKRKLHFAPYPEDICKLPILATCPQSGVVLDPFTGTG 321

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           T+  VA +L RS IGI++  +YI  A +R
Sbjct: 322 TTNLVAFQLGRSSIGIDISGEYITAAHER 350


>gi|154244393|ref|YP_001415351.1| DNA methylase N-4/N-6 domain-containing protein [Xanthobacter
           autotrophicus Py2]
 gi|154158478|gb|ABS65694.1| DNA methylase N-4/N-6 domain protein [Xanthobacter autotrophicus
           Py2]
          Length = 696

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 40/62 (64%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           + T+KPE L+ R++VSST    I+ D F GSGT+ AVA++L R +I  ++ +    I  K
Sbjct: 356 YDTRKPERLIERLIVSSTNADSIVADFFVGSGTTAAVAERLGRRWIASDLGKPACMITRK 415

Query: 264 RI 265
           R+
Sbjct: 416 RL 417



 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 80/212 (37%), Gaps = 35/212 (16%)

Query: 23  IIKGNSISVLEKLPA---------KSVDLIFADPPYNLQLNGQLY--------RPDHSLV 65
           +I G+++  +  L A           +D I+ DPP++ + + +            + S++
Sbjct: 70  LIYGDNLLAMAALIAGGSRNETLRNKIDFIYIDPPFDSKADYRTKIVLPDSEIEQNPSIL 129

Query: 66  D--AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-- 121
           +  A +D+W   ++  +Y       L   R +L   G++++         +  +   +  
Sbjct: 130 EQFAYSDTWADGTA--SYLQMITPRLSLMRELLSDVGSIYIHIDRSVGPYVKVIADEIFG 187

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK------AKGYTFNYDALKAAN 175
            +   N+I+WR++          + + H+ +++ + +           YT  Y       
Sbjct: 188 RYNFENEIIWRRTTSRGGS--EYYNHVHDNILFYTKNGCGIWNQQYTPYTDGYIDGMFRK 245

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
            D + R     P+ +   R    DG+   P +
Sbjct: 246 VDDRGRRYRESPLTAPGRR----DGDSGRPWK 273


>gi|121634979|ref|YP_975224.1| pseudogene (putative type III restriction-modification system
           modification protein) [Neisseria meningitidis FAM18]
 gi|120866685|emb|CAM10437.1| pseudogene (putative type III restriction-modification system
           modification protein) [Neisseria meningitidis FAM18]
          Length = 658

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 86/225 (38%), Gaps = 32/225 (14%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY 58
             K   A  EN  S    ++ +I+G+++ VL+ L      SV +I+ DPPYN   +G +Y
Sbjct: 118 EDKTHNAKPENAGS----QNLLIRGDNLEVLKHLKNAYTNSVKMIYIDPPYNTGSDGFVY 173

Query: 59  RPDHSLVDA---------------VTDSWDKFS-SFEAYDAFTRAWLLACRRVLKPNGTL 102
           + D     A               + D  DK S S  A+  F    L   R +LK +G +
Sbjct: 174 QDDRKFTPAELACLANIDEDEAARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVI 233

Query: 103 WVIGSYHNIFRIGTMLQNL---NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
           ++    +   ++  +   +     +I + IV   +        +   N HET++  +   
Sbjct: 234 FISIDDNEAAQLKLLCDEVFGEGNFIKDLIV---NTSEGGGNAKYVVNGHETVLVYAKDI 290

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
               +  N    K       + +D L  I   + R +      LH
Sbjct: 291 T---HFDNLKRPKDIRGKKIVINDELYWIQEDAVREQFGKYGNLH 332



 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 10/107 (9%)

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSST---KPGDIILDPFFGSGTSGAVAKKL----- 244
           E      G     T KP  LL R+++S+T      D+ILD F GSGT+     +L     
Sbjct: 405 ELFETGKGYSPFETPKPLDLLKRLVLSATFKGNQTDLILDFFAGSGTTAHAVMQLNAEGQ 464

Query: 245 --RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
              R +I +++ +   + +  R A    + +I    +     + RV 
Sbjct: 465 NGNRRYICVQLPEKTAEKSEARKAGYPTIFDITKARIEKAAAKIRVE 511


>gi|325208226|gb|ADZ03678.1| type III restriction-modification system enzyme mod [Neisseria
           meningitidis NZ-05/33]
          Length = 667

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 86/225 (38%), Gaps = 32/225 (14%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY 58
             K   A  EN  S    ++ +I+G+++ VL+ L      SV +I+ DPPYN   +G +Y
Sbjct: 127 EDKTHNAKPENAGS----QNLLIRGDNLEVLKHLKNAYTNSVKMIYIDPPYNTGSDGFVY 182

Query: 59  RPDHSLVDA---------------VTDSWDKFS-SFEAYDAFTRAWLLACRRVLKPNGTL 102
           + D     A               + D  DK S S  A+  F    L   R +LK +G +
Sbjct: 183 QDDRKFTPAELACLANIDEDEAARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVI 242

Query: 103 WVIGSYHNIFRIGTMLQNL---NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
           ++    +   ++  +   +     +I + IV   +        +   N HET++  +   
Sbjct: 243 FISIDDNEAAQLKLLCDEVFGEGNFIKDLIV---NTSEGGGNAKYVVNGHETVLVYAKDI 299

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
               +  N    K       + +D L  I   + R +      LH
Sbjct: 300 T---HFDNLKRPKDIRGKKIVINDELYWIQEDAVREQFGKYGNLH 341



 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 10/107 (9%)

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSST---KPGDIILDPFFGSGTSGAVAKKL----- 244
           E      G     T KP  LL R+++S+T      D+ILD F GSGT+     +L     
Sbjct: 414 ELFETGKGYSPFETPKPLDLLKRLVLSATFKGNQTDLILDFFAGSGTTAHAVMQLNAEGQ 473

Query: 245 --RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
              R +I +++ +   + +  R A    + +I    +     + RV 
Sbjct: 474 NGNRRYICVQLPEKTAEKSEARKAGYPTIFDITKARIEKAAAKIRVE 520


>gi|255608747|ref|XP_002538950.1| conserved hypothetical protein [Ricinus communis]
 gi|223509626|gb|EEF23433.1| conserved hypothetical protein [Ricinus communis]
          Length = 298

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 17/116 (14%)

Query: 19  WKDKIIKGNSISVLEKLPAK---SVDLIFADPPYN--------LQLNGQLYRPDHSLVDA 67
           W++KI  G+++ V+  L  +    VDLI+ DPP++        + L G+    + +  + 
Sbjct: 175 WRNKIFWGDNLQVMSHLLKELRGKVDLIYIDPPFDSKADYKKSVSLKGRAAESNRASFEE 234

Query: 68  --VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
              TD W+     + Y  F    LL  R +L PNG++++   Y     +  ML  +
Sbjct: 235 KQYTDIWNN----DEYLQFMFERLLLLRELLSPNGSIYLHCDYRKSHHLKLMLDEI 286


>gi|193064388|ref|ZP_03045470.1| DNA methylase N-4/N-6 domain protein [Escherichia coli E22]
 gi|192929050|gb|EDV82662.1| DNA methylase N-4/N-6 domain protein [Escherichia coli E22]
          Length = 124

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 44/83 (53%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 39  VPYTDVRTHKPVQFYPGKHPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALG 98

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  +G+E++ +  +   K ++ +
Sbjct: 99  RRALGVELESERFNQTVKEVSEL 121


>gi|261258281|ref|ZP_05950814.1| DNA methylase [Escherichia coli O157:H7 str. FRIK966]
          Length = 294

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 207 VPYTDVWTHKPVQYYPGKHPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALG 266

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R   G+E++ +  +   + +  +
Sbjct: 267 RRATGVELETERFEQTVREVQDL 289



 Score = 39.2 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 3/93 (3%)

Query: 84  FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
           +    L    RVLKP G+L++   +     I  M++   F +LN I+W K +   N   +
Sbjct: 1   WLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFSVLNHIIWAKPSGRWNGCNK 59

Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
               A+           A+ Y   Y    A  E
Sbjct: 60  ESLRAYFPA--TERILFAEHYQGPYRPKDAGYE 90


>gi|195182280|emb|CAP72353.1| DNA methylase [Escherichia coli]
 gi|195182288|emb|CAP74071.1| DNA methylase [Escherichia coli]
          Length = 83

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 39/65 (60%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L R  IG+E++    +   +
Sbjct: 14  HPCEKPAEMLRQIITTSSRPGDLVADFFMGSGSTVKAAMALGRRAIGVELETGRFEQTVR 73

Query: 264 RIASV 268
            +  +
Sbjct: 74  EVQDL 78


>gi|225020946|ref|ZP_03710138.1| hypothetical protein CORMATOL_00957 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946285|gb|EEG27494.1| hypothetical protein CORMATOL_00957 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 340

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/180 (23%), Positives = 68/180 (37%), Gaps = 14/180 (7%)

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAH 149
            A  R     G LW          +  M+Q +     N        P  +F G    +A 
Sbjct: 169 NAATRKYFDQGWLWYF------PPVDVMMQLVAH--ANWFGDPAGRPYFSFDGTTPVSAA 220

Query: 150 ETLIWASPSPKAKGYTFNYDALKAAN-EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
           E     S      G T  ++     N E  +       P      +L        H  QK
Sbjct: 221 EWATTRSVWHHEHGVTNVWERPPLRNSERYRGSMRRSAPRTHKPTKL-----SASHLNQK 275

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           P  L+ R + ++T PGD++ +PF G  ++   A +L R+    E  QD+  +A +R++S+
Sbjct: 276 PLDLMERCINATTNPGDVVWEPFGGLCSASVAAVRLGRTAFSAEPNQDFYQLAYERLSSL 335


>gi|11499004|ref|NP_070238.1| modification methylase, type III R/M system [Archaeoglobus fulgidus
           DSM 4304]
 gi|2649165|gb|AAB89839.1| modification methylase, type III R/M system [Archaeoglobus fulgidus
           DSM 4304]
          Length = 969

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/198 (24%), Positives = 78/198 (39%), Gaps = 8/198 (4%)

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWA--SPSPKAKGYTFNYDALKAANEDVQMRS---D 183
             W +      FR +   +  E   +    P     G T     L    +D ++     D
Sbjct: 629 YYWDEEESKEKFRNKILASKTEAFKYFDIKPETAVFGVTKIDRCLNCGGDDWKVEYLTSD 688

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
            +    +  +     DG K   T+  E LL R++ S++  GD++LD F GSGT+ AVA+K
Sbjct: 689 EVKITDNWKDIPSYSDGFK-FSTENSEILLKRVIESTSNEGDLVLDFFLGSGTTTAVAQK 747

Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQ--PLGNIELTVLTGKRTEPRVAFNLLVERGLIQP 301
           LRR +IG+EM + +  +   R+  V       I       ++   + A        L Q 
Sbjct: 748 LRRKWIGVEMGEHFWSVVLPRMKKVLFYDKSGISKEKDVREKYNEKTAGGFFKYHTLEQY 807

Query: 302 GQILTNAQGNISATVCAD 319
              L N +      V  D
Sbjct: 808 EDALENVEFGEVQRVLYD 825



 Score = 37.3 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 68/202 (33%), Gaps = 29/202 (14%)

Query: 12  NQNSIFEWKD-KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
            +N + E  D  +IK  +   L  L +   + V  I+ DPP+N     +    D      
Sbjct: 416 RENDLDEILDGVLIKSENFHALNLLLSKYYEKVQTIYIDPPFN-----KEQEADFLYKVG 470

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--I 125
             D+         +       +   R +L   G+++V   Y+    +  +L  +      
Sbjct: 471 YKDA--------TWITMLENRIRLGRELLNERGSIFVRCDYNGNAYLKLLLNEIFGKDNY 522

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
            N+I+  +          +F+   E L++ S S        NY       +   +   W 
Sbjct: 523 RNEIIVNRKR-QSIGTPNKFEVESEYLLFYSKSD-------NYLRRDLYRKRSLVDFKWT 574

Query: 186 IPICSGSERLRNKD--GEKLHP 205
             +  G      +   G+ L+P
Sbjct: 575 GFLNQGERNPPERTFFGKVLYP 596


>gi|261416218|ref|YP_003249901.1| DNA methylase N-4/N-6 domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261372674|gb|ACX75419.1| DNA methylase N-4/N-6 domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302326303|gb|ADL25504.1| putative type III restriction-modification system, Mod subunit
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 548

 Score = 77.7 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 38/65 (58%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
               KPE L+S ++ + T+ GD++LD F GSGT+ AVA K+ R +IG+E+          
Sbjct: 321 FDNPKPEMLISTLIDAVTEKGDLVLDSFLGSGTTAAVAHKMGRRWIGVELGDHCYSHCIS 380

Query: 264 RIASV 268
           R+  V
Sbjct: 381 RLQKV 385



 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 58/169 (34%), Gaps = 20/169 (11%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLNGQLY 58
            +K+  A  + +  IF+  + +I G+++  L+ L +K    V  ++ DPPYN        
Sbjct: 28  PEKSYCAKTKREGDIFD--NMLIHGDNLLALKALESKFTGQVKCVYIDPPYNTG------ 79

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
                   +    +D       +    RA L +  ++LK  G L++         +  + 
Sbjct: 80  --------SAFKHYDDCLEHSTWLNLMRARLESIFKLLKKEGVLFISIDDDECHYLKILC 131

Query: 119 QNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
             +            +    P+F           L +A     +  + +
Sbjct: 132 DEVFGRENFCGSFVWERKKKPSFLSNMGVVTEYILAYAKEKKSSPPFIY 180


>gi|321156644|emb|CBZ05912.1| DNA methyltransferase [Wolbachia endosymbiont of Drosophila
           teissieri]
          Length = 284

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 69/206 (33%), Gaps = 34/206 (16%)

Query: 21  DKIIKGNS--ISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +I  G+S  +   +  L  K  D+   DPPYN+       R D  +++           
Sbjct: 109 HRIYCGDSCVVESFKAVLDDKMADITVCDPPYNVDYGSSQEREDKKILNDNQG------- 161

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E Y+ F            K  G +++  S      +    +         I+W K++  
Sbjct: 162 -EKYELFLYDICSNILAYTK--GAIYICISSSEFSTLQKAFEEAGGKWSTFIIWAKNHFT 218

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                   Q  +E +++   S   + +          N+      D  I           
Sbjct: 219 LGRSDY--QRQYEAMLYGWKSGNKREW------HGGRNQSDLWFYDKPI----------- 259

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKP 223
                LHPT KP  L+ + +V+S++P
Sbjct: 260 --HNSLHPTMKPVELMEKAIVNSSRP 283


>gi|254003154|ref|YP_003052620.1| DNA methylase N-4/N-6 domain protein [Methylovorus sp. SIP3-4]
 gi|253987237|gb|ACT52093.1| DNA methylase N-4/N-6 domain protein [Methylovorus sp. SIP3-4]
          Length = 413

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 49/304 (16%), Positives = 93/304 (30%), Gaps = 72/304 (23%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           I G+  +V  +L    + L    PPY L        P+                   +  
Sbjct: 122 ILGSCDTVFSRL-DTPIHLCVTSPPYPLASQRAYGNPNEG----------------DFVD 164

Query: 84  FTRAWLLACRRVLKPNGTLW-VIGSY----------HNIFRIGTMLQN-LNFWILNDIVW 131
           +    +    + L   G++   IG+               R+   L + L   +++ +VW
Sbjct: 165 WLCRSIEPVVKNLVNGGSICLNIGNDIFISGSPARSLYQERLLLALHDRLGLSLMDRLVW 224

Query: 132 RKSNPMPNFRGRRFQN------AHETLIWASPSPKAKG---------------------- 163
              +  P        N      A E + W + +P A                        
Sbjct: 225 HNPSKPPGPVQWASLNRVQLNVAWEPVYWLTNNPNAVRSDNRRVLQEHTERHLNFIRNGG 284

Query: 164 -----------YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL----HPTQK 208
                      Y     A          R+          +R   +  + +    H    
Sbjct: 285 IKARSSASDGAYIKRIGAYSTETLGRIPRNVLTFGHACQDQRNYKQFAKNVGLPAHGAAM 344

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           P +L S ++   ++P D+++DPF GS ++   A++L R ++  E   +Y+  A+ R    
Sbjct: 345 PLSLASFLIEFLSRPDDLVVDPFGGSFSTAKAAEQLGRRWLSTECMIEYVLGASVRFKEF 404

Query: 269 QPLG 272
              G
Sbjct: 405 DGFG 408


>gi|8346570|emb|CAB93763.1| hypothetical protein [Enterobacteria phage phiP27]
          Length = 312

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 42/83 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 225 VPYTDVWMYKPVQYYLGKHPCEKPAEMLRQIITTSSRPGDLVADFFMGSGSTVKAAMALG 284

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R  IG+E++    +   + +  +
Sbjct: 285 RRAIGVELETGRFEQTVREVQDL 307



 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%)

Query: 70  DSWD-KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
           + WD ++   + Y  +    L    RVLKP G+L++   +     I  M++   F +LN 
Sbjct: 4   EGWDNQWKGDDDYLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRE-RFNVLNH 62

Query: 129 IVWRKSNPMPNFRGRRFQNAHET 151
           I+W K +   N   +    A+  
Sbjct: 63  IIWAKPSGRWNGCNKESLRAYFP 85


>gi|127450|sp|P14827|MTEC_ENTCL RecName: Full=Modification methylase EcaI; Short=M.EcaI; AltName:
           Full=Adenine-specific methyltransferase EcaI
 gi|41315|emb|CAA34968.1| unnamed protein product [Enterobacter cloacae]
          Length = 452

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 5/125 (4%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL----HPTQKPEALLSRILVSSTK 222
           ++         V +  D  I      E  R+   + +    +PT+K   ++  I+ +S+ 
Sbjct: 281 HWSKTGNPRRKVYLTDDKSIGYTDYWEEFRDAHHQSILVTGYPTEKNFNMMKLIVGASSN 340

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ-PLGNIELTVLTG 281
           PGD+++DPF GSG++   A  L+R +IGI+          KR A  + P+G+   T L  
Sbjct: 341 PGDLVIDPFCGSGSTLHAASLLQRKWIGIDESLFAAKTVMKRFAIGRAPMGDYVNTSLNK 400

Query: 282 KRTEP 286
           +   P
Sbjct: 401 QTELP 405



 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 64/160 (40%), Gaps = 14/160 (8%)

Query: 21  DKIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +  I  ++   L +L    K   LI+ DPPY   +       +H+  D +T++       
Sbjct: 72  NSFIWSDNSLALNRLMVEGKKAKLIYLDPPYATGMGFSSRSNEHAYDDCLTEA------- 124

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPM 137
            AY  F R  L+  R +L  +GT++V   +  +  +  +L  +       +++ R+    
Sbjct: 125 -AYLEFMRRRLILMREILDDDGTIYVHIGHQMLGELKCLLDEIFGRERFINLITRRKCSS 183

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
            N     F N ++ ++  S     K Y +N    K   E 
Sbjct: 184 KNSTKNNFANLNDYILCYSKG---KKYIWNRPLKKPDAEW 220


>gi|148828222|ref|YP_001292975.1| twin-argninine leader-binding protein DmsD [Haemophilus influenzae
           PittGG]
 gi|115289027|gb|ABI85520.1| M.Hin1056ModP-8 [Haemophilus influenzae]
 gi|148719464|gb|ABR00592.1| twin-argninine leader-binding protein DmsD [Haemophilus influenzae
           PittGG]
          Length = 724

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/100 (39%), Positives = 53/100 (53%), Gaps = 4/100 (4%)

Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
           A    N  + +   W     +G   +  + G      +KPE LL  IL  +TK GDIILD
Sbjct: 495 AFAEINSSIYIGDIWFKITTTGG--VAQEGGVNFTNGKKPEQLLKIILDCATKKGDIILD 552

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRIASV 268
              GSGT+ AVA K+ R +IGIE + DYI  +A +R+  V
Sbjct: 553 FHLGSGTTAAVAHKMNRQYIGIE-QMDYIKTLAVERLKKV 591



 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 68/177 (38%), Gaps = 28/177 (15%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       V LI+ DPPYN   +G  Y              DKF +
Sbjct: 203 NLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTGNDGFKY-------------NDKF-N 248

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSN 135
              +  F +  L   +++L  +G ++V    +    +  ++  +      +N I+   SN
Sbjct: 249 HSTWLTFMKNRLEIAKKLLADDGVIFVQCDDNEQAYLKILMDEIFERENFINTIIPEMSN 308

Query: 136 PMPNF-----RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
              N      +G++F    E ++  +          N    K A E      + +IP
Sbjct: 309 ASGNKIKHAIKGKKFPKLKEYILLYAKDKN----QINLTIPKQAKEKWDKEYNQIIP 361


>gi|239616473|ref|YP_002939795.1| DNA methylase N-4/N-6 domain protein [Kosmotoga olearia TBF 19.5.1]
 gi|239505304|gb|ACR78791.1| DNA methylase N-4/N-6 domain protein [Kosmotoga olearia TBF 19.5.1]
          Length = 683

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 46/72 (63%)

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           N+ G +L   +KPEALL RI+  ST+  DI+LD F G+GT+ AVA K+ R +IG+E    
Sbjct: 485 NEGGVRLKEGKKPEALLKRIIELSTEENDIVLDFFMGTGTTCAVAHKMGRQYIGVEQLDY 544

Query: 257 YIDIATKRIASV 268
             + A  R+ +V
Sbjct: 545 GENSAVVRLKNV 556



 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 65/185 (35%), Gaps = 22/185 (11%)

Query: 21  DKIIKGNSI----SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + IIKGN++    S+L++   K V LI+ DPPYN   +   Y              D F 
Sbjct: 188 NLIIKGNNLLVLYSLLKEFRGK-VKLIYIDPPYNTGSDEFQY-------------NDNFR 233

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
               +  F +  L   + +LK +G ++V   +H I  +  ++           +      
Sbjct: 234 H-STWLTFMKNRLEVAKELLKDDGAIFVQLDHHEIGYLNVLMDETFGRGNKVQIIAIKTA 292

Query: 137 MP---NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
            P           +  E +++ +   K   +   Y  ++      ++  ++     +   
Sbjct: 293 SPAGFKVVNPGPIDVTEYILFYARDKKKFNFKLQYVEVEYHENYDRVILNFEDKPENWKL 352

Query: 194 RLRNK 198
               K
Sbjct: 353 ESIKK 357


>gi|329295798|ref|ZP_08253134.1| DNA methylase, N6_N4_Mtase domain protein [Plautia stali symbiont]
          Length = 348

 Score = 77.3 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 8/124 (6%)

Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
                + K    N     +  +D+     W  P                HP +KP ALL 
Sbjct: 232 MKNYAEFKRQYENLRRPFSVTKDMPYTDVWNFPPV--------LYYPSKHPCEKPAALLE 283

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
            I+ +S++ G  + D F GSG++   A +L R  IG+E++ D      K I ++ P  N 
Sbjct: 284 HIINASSRSGHTVADFFMGSGSAVKAAIQLGRQAIGVELETDRFIQTQKEIENLIPQINN 343

Query: 275 ELTV 278
           E  +
Sbjct: 344 EGMI 347



 Score = 69.2 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 18/116 (15%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAYDAFTRAWLL 90
           ++ L   S+DLI  DPPY                   + +WD ++ +   Y A+   +L+
Sbjct: 4   IKTLSDNSIDLIVTDPPY---------------YRVKSCAWDRQWKTTGQYLAWLNDYLV 48

Query: 91  ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
             +R+LKPNG+L++  S         ML+N +  +LN I+W K    P  R ++  
Sbjct: 49  EFQRILKPNGSLYLFCSAALAADTEIMLRN-HMRVLNHIIWAKPFG-PWRRQKKDT 102


>gi|213692226|ref|YP_002322812.1| DNA methylase N-4/N-6 domain protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523687|gb|ACJ52434.1| DNA methylase N-4/N-6 domain protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320458352|dbj|BAJ68973.1| putative phage DNA methylase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 372

 Score = 77.3 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 66/169 (39%), Gaps = 24/169 (14%)

Query: 14  NSIFEWKD---KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
            S+ +W D   +++ G+   ++  LP  SVD +  DPPY +      +       D   D
Sbjct: 1   MSLTQWDDGRIRLMPGDCRDLIAMLPDNSVDSVITDPPYEIGFMNLGFDSTGVAFDV--D 58

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
            W                     RVLKP G +    +     R+   +++  F I + I 
Sbjct: 59  LWRDIL-----------------RVLKPGGHVAAFAASRTYHRLACAIEDAGFEIRDQID 101

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
           W  ++ MP+    R     E    A+ + +A+ +   Y  LK A+E + 
Sbjct: 102 WVYASGMPHGSDARLLVDREP--GATRTGQAEQWAGWYSQLKPAHEPIC 148



 Score = 76.2 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 34/64 (53%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           LHPT KP  L+  ++   T P  ++L+PF GSG +    +      +  EM  DY+ +  
Sbjct: 301 LHPTVKPLELMRWLVRLVTPPDGLVLEPFAGSGATLEACRIEDVRCVAAEMDSDYVRLIA 360

Query: 263 KRIA 266
           +R+A
Sbjct: 361 RRMA 364


>gi|254672454|emb|CBA05865.1| Adenine specific DNA methylase Mod [Neisseria meningitidis
           alpha275]
          Length = 563

 Score = 77.3 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 86/225 (38%), Gaps = 32/225 (14%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY 58
             K   A  EN  S    ++ +I+G+++ VL+ L      SV +I+ DPPYN   +G +Y
Sbjct: 23  EDKTHNAKPENAGS----QNLLIRGDNLEVLKHLKNAYTNSVKMIYIDPPYNTGSDGFVY 78

Query: 59  RPDHSLVDA---------------VTDSWDKFS-SFEAYDAFTRAWLLACRRVLKPNGTL 102
           + D     A               + D  DK S S  A+  F    L   R +LK +G +
Sbjct: 79  QDDRKFTPAELACLANIDEDEAARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVI 138

Query: 103 WVIGSYHNIFRIGTMLQNL---NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
           ++    +   ++  +   +     +I + IV   +        +   N HET++  +   
Sbjct: 139 FISIDDNEAAQLKLLCDEVFGEGNFIKDLIV---NTSEGGGNAKYVVNGHETVLVYAKDI 195

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
               +  N    K       + +D L  I   + R +      LH
Sbjct: 196 T---HFDNLKRPKDIRGKKIVINDELYWIQEDAVREQFGKYGNLH 237



 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 10/107 (9%)

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSST---KPGDIILDPFFGSGTSGAVAKKL----- 244
           E      G     T KP  LL R+++S+T      D+ILD F GSGT+     +L     
Sbjct: 310 ELFETGKGYSPFETPKPLDLLKRLVLSATFKGNQTDLILDFFAGSGTTAHAVMQLNAEGQ 369

Query: 245 --RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
              R +I +++ +   + +  R A    + +I    +     + RV 
Sbjct: 370 NGNRRYICVQLPEKTAEKSEARKAGYPTIFDITKARIEKAAAKIRVE 416


>gi|85717134|ref|ZP_01048093.1| possible DNA methylase [Nitrobacter sp. Nb-311A]
 gi|85696025|gb|EAQ33924.1| possible DNA methylase [Nitrobacter sp. Nb-311A]
          Length = 897

 Score = 77.3 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 77/218 (35%), Gaps = 26/218 (11%)

Query: 19  WKDKIIKGNSISVLEKL-----PAKSVDLIFADPPYNLQL----------------NGQL 57
           W +++I G+S+ V+  L        SV  I+ DPPY ++                   + 
Sbjct: 177 WTNRLILGDSLQVMNSLLEYEGMGNSVQTIYFDPPYGVRYGSNFQPFVRRRKVEHGKDEE 236

Query: 58  YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
           +  +  +V A  D+W+      +Y  + R      R +L   G+++V  S  N+  +  +
Sbjct: 237 FSREPEMVKAYRDTWELGRH--SYLTYMRDRCRLARDLLTDTGSIFVQISDENLHLVRAV 294

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
           L  +        V      MP   G + ++  + L W + S     Y   +         
Sbjct: 295 LDEVFGEENFVAVINFKTMMPLESG-KIESVVDYLCWYAKSKPIMKYHNIWVKKNVGKGS 353

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
             + +D   P      RL  ++ +    T     +  R
Sbjct: 354 EFVFADDGGP--DRHRRLHKEEMDDFDNTASKNNVFKR 389



 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 36/68 (52%)

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           + G + +  Q    ++ R +  ++ PGD++ D   GSGT+   A+K  R +I  +  +  
Sbjct: 466 EFGSRSYVVQTTPTVIERCINMTSDPGDLVFDLTCGSGTTAYCAEKWGRRWITCDTSRVP 525

Query: 258 IDIATKRI 265
           + +A +R+
Sbjct: 526 LALARQRL 533


>gi|289669890|ref|ZP_06490965.1| methyltransferase [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 543

 Score = 77.3 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 61/328 (18%), Positives = 97/328 (29%), Gaps = 95/328 (28%)

Query: 19  WKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNG---------QLYRPDHSL-- 64
           W + II+G++   L  L      ++  I+ DPPYN              + +R  HSL  
Sbjct: 61  WDNLIIEGDNYDALRALRMTHKGAIRCIYIDPPYNTGNKDFVYNDRFVDKTHRFRHSLWL 120

Query: 65  ----------VDAVTDSWDKFSSFEAYDAF-----TRAWLLA--------CRRVLKPNGT 101
                      + + D    F S +  + F                     ++V  P  T
Sbjct: 121 EFMYRRLQLAKELLADDGVIFVSIDDNEVFRLGMLMDRVFGEDNFIANVIWQKVYSPKNT 180

Query: 102 LWVIGSYHNIFRIGTMLQNL------------------------NFWILNDIVWRKSNPM 137
                  H    + T  +N+                          W  +D+  R     
Sbjct: 181 AQHFSDDHEYIVVYTKNRNIWRPMPLPRSAEQDRAYKNRDNDPRGPWKPSDLSARNFYGA 240

Query: 138 P-----NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP----- 187
                    GR  +     + W     K K    +       + +        I      
Sbjct: 241 GTYSITCPTGRYIEAPPPGMYWRVSEKKFKELDGDNRIWWGKDGNNIPAVKRFISEVKQG 300

Query: 188 -----ICSGSERLRNKDGEK-------------LHPTQKPEALLSRILVSSTKPGDIILD 229
                + + +E    +D +K             +  T KP  L+ RIL  ++KPGD +LD
Sbjct: 301 VVPQTLWTYAEVGHTQDAKKELLEVLQFASSGDVFSTPKPVQLMERILRIASKPGDTVLD 360

Query: 230 PFFGSGTSGAVAKKL------RRSFIGI 251
            F GSGT      KL       R FI +
Sbjct: 361 FFAGSGTFAQAVAKLNAEDGGNRKFILV 388


>gi|237750020|ref|ZP_04580500.1| type II DNA modification enzyme [Helicobacter bilis ATCC 43879]
 gi|229374431|gb|EEO24822.1| type II DNA modification enzyme [Helicobacter bilis ATCC 43879]
          Length = 893

 Score = 77.3 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 54/131 (41%), Gaps = 8/131 (6%)

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER-----LRN 197
              ++  E  IW        GY      L    E +  R+ +      G+          
Sbjct: 610 NFKKHIKENRIWW---GNGNGYPMIKRFLSEVQEGLVPRTIFYYDETGGNPAGDKALKDT 666

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
            D  K+    KPE L+ +I    +    IILD F GSGTS A A+KL R ++GIEM + +
Sbjct: 667 FDNLKVFENPKPEGLIQQIAEIGSNENSIILDFFAGSGTSVATAQKLGRKWLGIEMGEHF 726

Query: 258 IDIATKRIASV 268
             +   R+  V
Sbjct: 727 YKVILPRLKKV 737



 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 78/213 (36%), Gaps = 25/213 (11%)

Query: 22  KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           ++IK ++   L  L       VDLI+ DPPYN   N  +Y              DKF + 
Sbjct: 417 ELIKADNFQALNSLMPKYQNKVDLIYIDPPYNTSNNDFVY-------------MDKF-NH 462

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL---NFWILNDIVWRKSN 135
            ++ +     L   R  L+ +G++++    +   R+  +  ++   + +I N I  +   
Sbjct: 463 ASWLSMIANRLELAREFLQDSGSIFISIDDNEQARLKILCDSIFSEDNFISNGIYEKVKI 522

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
              + +     + H  +   +     +      D     N D   R  W IPI   +   
Sbjct: 523 RKNSAQYFSESHEHILIFARNRDIWKRKLLPRKDLKGYKNPDNDPRGVW-IPIPIHANHY 581

Query: 196 RNKDGEKLHPT----QKPEALLSRILVSSTKPG 224
            + D +   P     +KP+    R+   + K  
Sbjct: 582 YDADYKITKPNGVILEKPKNQSWRLSEENFKKH 614


>gi|300215360|gb|ADJ79773.1| type III restricction-modification system: methylase [Lactobacillus
           salivarius CECT 5713]
          Length = 479

 Score = 77.3 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 42/63 (66%), Gaps = 2/63 (3%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI-DIATKRI 265
           +KPE LL RI+ S+T   DI+LD F GSG++ A A K+ R +I IE + DY+ +   KR+
Sbjct: 292 KKPEKLLQRIIASATDENDIVLDFFGGSGSTAATAHKMNRKYITIE-QMDYVREKIVKRL 350

Query: 266 ASV 268
            +V
Sbjct: 351 NNV 353



 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 43/117 (36%), Gaps = 19/117 (16%)

Query: 42  LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
           +I+ DPPYN   +   Y              DKF +  A+  F +  L   R +L  +G 
Sbjct: 1   MIYLDPPYNTGSDSFGY-------------NDKF-NHSAWLTFMKNRLEIAREMLSDDGM 46

Query: 102 LWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRG---RRFQNAHETLI 153
           +++    +    +  ++  +      LN I  +         G   +R +   E ++
Sbjct: 47  IFIQTDDNEHAYLRVLMDEIFGVNRYLNTITIKAKASSGASGGGEDKRLKKNTEFIL 103


>gi|4321654|gb|AAD15792.1| modification methylase LlaFI [Lactococcus lactis]
          Length = 680

 Score = 77.3 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 4/97 (4%)

Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
           A N       D+   I +    L N+        +KPE ++ RI+  +T   D +LD F 
Sbjct: 450 AKNYLETNPGDFWNDIKTTG--LDNEGIVSFKNAKKPEEIIKRIITIATNTNDTVLDFFM 507

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRIASV 268
           GS T+ AVA K+ R FIGIE + DYI+ ++  R+  V
Sbjct: 508 GSATTQAVAMKMNRRFIGIE-QMDYINTVSVPRLQKV 543



 Score = 61.9 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 73/198 (36%), Gaps = 25/198 (12%)

Query: 13  QNSIFEWKDK---IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           ++ I E+ D+   IIKGN++  L  L    A  V  I+ DPPYN   +   Y        
Sbjct: 162 EHDITEFSDEDNLIIKGNNLLALHSLKKRYAGKVQCIYIDPPYNTGNDSFKY-------- 213

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW-- 124
                 D+F +   +  F R  L   + +L   G ++V    +    +  +L ++     
Sbjct: 214 -----NDRF-NHSTWLTFMRNRLEIAKELLSEEGLIFVQCDDNQQAYLKVLLDSIFSKEN 267

Query: 125 ILNDIVWRKSNPMPNFR---GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
            +++IV + S           +R     E ++    +  ++  T         +E   + 
Sbjct: 268 FMSNIVIKMSEASGVKMSHANKRLPKLKEYILSYKKNSNSEINTLKVKKKYWDSEYNSIL 327

Query: 182 SDWLIPICSGSERLRNKD 199
                      +++ NKD
Sbjct: 328 VGIDEDEFQKLDKIINKD 345


>gi|319792670|ref|YP_004154310.1| DNA methylase n-4/n-6 domain protein [Variovorax paradoxus EPS]
 gi|315595133|gb|ADU36199.1| DNA methylase N-4/N-6 domain protein [Variovorax paradoxus EPS]
          Length = 388

 Score = 76.9 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 9/91 (9%)

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
               RS W +P         ++     H    P  L+   +++    G  +LD FFGSGT
Sbjct: 299 KRNRRSVWTVP---------SEPYSGAHFATFPRKLIEPCILAGCPVGGTVLDIFFGSGT 349

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           +G VA+ L R+FIGIE+      +   R+  
Sbjct: 350 TGEVAQALGRNFIGIELNAANESLQADRLRQ 380



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 79/241 (32%), Gaps = 59/241 (24%)

Query: 17  FEWKDKIIKGNSISVLEKL-PAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
            +W ++   G+   VL ++      V  I   PPY    +       + + +  ++    
Sbjct: 1   MDWLNRCHFGDVRMVLRRMIADGVQVHTIVTSPPYWGLRSYLPAGHPNKVHEIGSE---- 56

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLW-VIGSYH------------------------ 109
             +   + A        CR+VL+ +GT+W  +G  +                        
Sbjct: 57  -PTLAEFLAGMVEVFDLCRQVLRDDGTMWVNMGDSYAASSLSNHGRGKATPATNSRGALQ 115

Query: 110 ------------------------NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
                                     +R+   LQ+  +W+  D++W K NPMP     R 
Sbjct: 116 PGAAWENPPRRMPGEGLKSKDLVGQPWRLAFALQDAGWWLRQDVIWHKPNPMPESIRDRC 175

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
             AHE +   +    ++ Y ++++A++   +        +    SG  +         H 
Sbjct: 176 TKAHEYIFLLAK---SERYYYDFEAMQEPVQGTAHARRAMPKHPSGWAQGDAPHTAAAHQ 232

Query: 206 T 206
           T
Sbjct: 233 T 233


>gi|217078044|ref|YP_002335762.1| modification methylase, type III R/M system [Thermosipho africanus
           TCF52B]
 gi|217037899|gb|ACJ76421.1| modification methylase, type III R/M system [Thermosipho africanus
           TCF52B]
          Length = 879

 Score = 76.9 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 86/246 (34%), Gaps = 16/246 (6%)

Query: 49  YNLQLNGQLYRPD-HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
           Y    +    R D +     V   W  F   E  +   R +      +  P G  + +  
Sbjct: 514 YFYSKSENYLRKDIYKKRSLVNFKWAGFLKQEERNPPQRIFFGKV--LYPPKGQHFSLIQ 571

Query: 108 YHNIFRIGTMLQNLNFWILNDIV-WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
                 +      L       I  W       NF+ +   N  +   +    P+    T 
Sbjct: 572 EKVDKLLKEHFLRLKCKKCGAIYYWDDEETKENFKNKILINKKDVFKYLDIKPE----TN 627

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL--------HPTQKPEALLSRILV 218
            Y   K        + DW +   +  E     + + +          T+  E LL RI+ 
Sbjct: 628 VYGVKKVDKCLNCGQDDWKVEYLTSDEVKVTDNWKDIPSYSDYFKFSTENSEILLKRIIE 687

Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278
           S++  G++I+D F GSGT+ AVA KLRR +IGIE+   +  +   R+  V       ++ 
Sbjct: 688 STSNDGNLIIDFFLGSGTTTAVAHKLRRKWIGIELGDHFWSVVLPRMKKVLAYDKSGISK 747

Query: 279 LTGKRT 284
               R 
Sbjct: 748 EKDVRE 753



 Score = 43.1 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 20/161 (12%), Positives = 53/161 (32%), Gaps = 18/161 (11%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQLNGQL-YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
           ++L K   + V  I+ DPP+NL  + Q  YR ++   +              +       
Sbjct: 404 TILPKFK-EKVQTIYIDPPFNLDSSDQFMYRTNYKDAN--------------WATLLENR 448

Query: 89  LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--ILNDIVWRKSNPMPNFRGRRFQ 146
           +   +  L   G+++V   Y+  + +  ++  +       N+I+  +         +   
Sbjct: 449 IKLAKEWLNEKGSIFVRCDYNGNWIVRPLMDEIFGKENFKNEIIINRKRQSIGTPNKFEV 508

Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
                  ++      +   +   +L        ++ +   P
Sbjct: 509 ENEYLYFYSKSENYLRKDIYKKRSLVNFKWAGFLKQEERNP 549


>gi|91791191|ref|YP_552141.1| DNA methylase N-4/N-6 [Polaromonas sp. JS666]
 gi|91701072|gb|ABE47243.1| DNA methylase N-4/N-6 [Polaromonas sp. JS666]
          Length = 355

 Score = 76.9 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 36/74 (48%)

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
             +  N++G   H    P AL   ++   ++ G +++DPF G  T+   A+   R +IG 
Sbjct: 268 VRKFVNREGLPNHGATFPLALAKFLVEYLSEAGQLVVDPFSGWFTTALAAELTGRRWIGC 327

Query: 252 EMKQDYIDIATKRI 265
           E    YI+ A +R 
Sbjct: 328 EKMLQYIEGARRRF 341



 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR 59
          + G+   V  ++  + V  +   PPY +   G+ Y 
Sbjct: 62 LWGDCKDVFSQI-TEPVHCVITSPPYPIA-KGRAYG 95


>gi|313116829|ref|YP_004037953.1| DNA modification methylase [Halogeometricum borinquense DSM 11551]
 gi|312294781|gb|ADQ68817.1| DNA modification methylase [Halogeometricum borinquense DSM 11551]
          Length = 584

 Score = 76.9 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 68/203 (33%), Gaps = 28/203 (13%)

Query: 36  PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRV 95
             +SVDLI   PPY               +D   + + + S  E Y       L   ++ 
Sbjct: 233 KEESVDLIITSPPYW---------RKREYLDEDDEEFGQESDPEEYVENLVTILDQWKKF 283

Query: 96  LKPNGTLWVIGSYHNIFR--------IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
           LKP G++++       ++             +  ++ + NDI+W K N +P+    R   
Sbjct: 284 LKPTGSVFLNIGDTYRYKSLQGIPGLFAEKARKGDWTVRNDIIWTKENGVPSPVDDRLAP 343

Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
            HE +           Y ++ +A     +      D           + +    + H   
Sbjct: 344 RHEHIFHLV--LDRDDYYYDREAYIDLYQTGANPID--------VWSMSHDRNTRNHLAP 393

Query: 208 KPEALLSRILVSSTKPGDIILDP 230
            PE L  R L  +  P  +  D 
Sbjct: 394 FPEDLARRALTLAC-PSQVCEDC 415



 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
              +LDPF GSGT+  VA KL     G+++ 
Sbjct: 543 PGRVLDPFAGSGTTLKVASKLGYHAHGVDLD 573


>gi|21229692|ref|NP_635609.1| methyltransferase [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66766569|ref|YP_241331.1| methyltransferase [Xanthomonas campestris pv. campestris str. 8004]
 gi|21111176|gb|AAM39533.1| methyltransferase [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66571901|gb|AAY47311.1| methyltransferase [Xanthomonas campestris pv. campestris str. 8004]
          Length = 543

 Score = 76.9 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 59/330 (17%), Positives = 98/330 (29%), Gaps = 99/330 (30%)

Query: 19  WKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNG---------QLYRPDHSL-- 64
           W + II+G++   L  L      ++  I+ DPPYN              + +R  HSL  
Sbjct: 61  WDNLIIEGDNYDALRALRMTHKGAIRCIYIDPPYNTGNKDFVYNDRFVDKTHRFRHSLWL 120

Query: 65  ----------VDAVTDSWDKFSSFEAYDAF-----TRAWLLA--------CRRVLKPNGT 101
                      + + D    F S +  + F                     ++V  P GT
Sbjct: 121 EFMYRRLQLAKELLADDGVIFVSIDDNEVFRLGMLMDRVFGENNFIANVIWQKVFSPKGT 180

Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWR-----------------KSNPMPNFRGRR 144
                  H    +    ++ N W  N +                     ++   + R   
Sbjct: 181 AQHFSDDHE--YVIIYGRDKNKWRPNLLARTAAQDRAYKNPDDDPRGLWTSGDLSARNYY 238

Query: 145 FQNAHETL--------------IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI---- 186
            +  +  +               W     + K    +       + D   R    +    
Sbjct: 239 SKGVYSIVGPTGRVIAGPPAGTYWRFSEERFKELDADNRIWWGKSGDNMPRLKRFLADVQ 298

Query: 187 ------PICSGSERLRNKDGEK-------------LHPTQKPEALLSRILVSSTKPGDII 227
                  + +  E    +D +K             +  T KP  L+ RIL  ++KPGD +
Sbjct: 299 QGTVPQTLWTYGEVGHTQDAKKQLLEVLNFNSTNDVFSTPKPIQLMERILSIASKPGDTV 358

Query: 228 LDPFFGSGTSGAVAKKL------RRSFIGI 251
           LD F GSGT      KL       R FI +
Sbjct: 359 LDFFAGSGTFAQAVAKLNAEDGGNRKFILV 388


>gi|91204435|emb|CAJ70935.1| hypothetical protein kustb0190 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 128

 Score = 76.9 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 38/68 (55%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           +L RI+ +S+   DI+ D F GSGT+ AVA+KL R +IG ++ +  I    KR+  VQ  
Sbjct: 1   MLERIIKASSNENDIVADFFCGSGTTPAVAEKLGRKWIGADLGKFAIHTTRKRMIGVQRQ 60

Query: 272 GNIELTVL 279
              +    
Sbjct: 61  LKEDGKDF 68


>gi|312173964|emb|CBX82218.1| K07319 putative adenine-specific DNA-methyltransferase [Erwinia
           amylovora ATCC BAA-2158]
          Length = 210

 Score = 76.9 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 17/131 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
           +++  +S+  ++ LP  S+DLI  DPPY                     +WD ++ +   
Sbjct: 11  ELVNADSLVYIKTLPDNSIDLIATDPPY---------------YRVKDCAWDRQWDTVTD 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y A+   +L    RVLKPNG+L++            +++     +L+ + W K N     
Sbjct: 56  YLAWLDEFLAEFWRVLKPNGSLYLFCGSKLAADTEILVRQ-RMQVLSAVTWAKPNGHWLR 114

Query: 141 RGRRFQNAHET 151
             +    A+  
Sbjct: 115 HNKSSLRAYFP 125


>gi|227504294|ref|ZP_03934343.1| possible adenine-specific DNA-methyltransferase [Corynebacterium
           striatum ATCC 6940]
 gi|227199133|gb|EEI79181.1| possible adenine-specific DNA-methyltransferase [Corynebacterium
           striatum ATCC 6940]
          Length = 437

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 62/169 (36%), Gaps = 5/169 (2%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPAKSV--DLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
           QN   +  + I +G+++  L+ L ++    D+I+ DPPYN                  + 
Sbjct: 58  QNGESDSPNTIFEGDNLDALKVLGSEGFRADVIYIDPPYNTGKEFVYTDNYRRRRKMGSG 117

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDI 129
           S+ ++ +   + +     L   R +LK  G ++V         +  ++  +         
Sbjct: 118 SYGQWHA--EWLSMMYPRLFLARGILKETGFIFVSIGEDECANLRKIMDEIFGEDCFAGQ 175

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
           +  K         +     HE ++  + SP   G+  +  A  + N + 
Sbjct: 176 LIWKKGGTGKNDSKYAVVEHEYILCYAKSPDNPGFNVDEGAHTSTNYNF 224



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 40/128 (31%), Gaps = 5/128 (3%)

Query: 119 QNLNFWILNDIVWRKSNPMPNFRGR-RFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
                    D    K        GR +    ++ L++       K Y       +  +  
Sbjct: 253 DEKGRQYWPDQPTGKEKVARWRWGREKVAANYDQLVFRRGFVYTKNYQ--KKGARPRSIL 310

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
              R          +E +    G    P  KP  L+  ++  +  P  ++LD F GSGT+
Sbjct: 311 DGERFGVTRAGRRDAENVMGVQGVFEFP--KPVRLIKHLVAIAGGPNAVVLDFFAGSGTT 368

Query: 238 GAVAKKLR 245
                +L 
Sbjct: 369 AQAVLELN 376


>gi|326336473|ref|ZP_08202643.1| modification methylase HpaI [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325691346|gb|EGD33315.1| modification methylase HpaI [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 297

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 24/138 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++   +++ V+  L  +S+D+I  DPPY    N +L RP                 FE +
Sbjct: 5   QLYNADNLEVMATLADESIDVICIDPPYLYLKNQKLERP-----------------FEEH 47

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                 +   C+R+L   G + + G   + +R  TML  L F    +++W K        
Sbjct: 48  -----KFFAECKRLLTKKGFIVMFGRGTSFYRWNTMLDGLGFVFKEEVIWNKGFSTAPTL 102

Query: 142 GRRFQNAHETLIWASPSP 159
               Q  HET+   +   
Sbjct: 103 P--IQRFHETIAIYTKEK 118



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 7/83 (8%)

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGD------IILDPFFGSGTSGAVAKKLRRS 247
           ++  +   +LHPTQKP  LL R+L +   P D      ++ D F GS +   V   +   
Sbjct: 213 KVNYERFNRLHPTQKPVRLLERLL-ALVIPKDKPLNEIVVADFFAGSMSCMEVVYNMGMK 271

Query: 248 FIGIEMKQDYIDIATKRIASVQP 270
            I  E+ ++Y +   +RI ++QP
Sbjct: 272 GIATEIDKEYFEKGKQRIENLQP 294


>gi|291439977|ref|ZP_06579367.1| DNA methylase N-4/N-6 [Streptomyces ghanaensis ATCC 14672]
 gi|291342872|gb|EFE69828.1| DNA methylase N-4/N-6 [Streptomyces ghanaensis ATCC 14672]
          Length = 944

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 6/153 (3%)

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
            P   G +        +  +      G T  Y             + W     +G     
Sbjct: 415 RPAKGGWKTNREGMERLKNAKRLLGLGRTLRYVRYFDDFPAFPRNNLWDDTTTAGF---- 470

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
               +K++  Q    ++ R ++ +T PGD++LDP  GSGT+  VA++  R +I I+  + 
Sbjct: 471 --GADKIYVVQTNTKVIERCMLMATDPGDLVLDPTCGSGTTAYVAEQWGRRWITIDTSRV 528

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
            I +A  R+   +    +      GK  E  ++
Sbjct: 529 AIALARHRLMGAKYPAYLLADSPEGKAKEAEIS 561



 Score = 69.6 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 73/177 (41%), Gaps = 27/177 (15%)

Query: 17  FEWKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQL-YRPDHSLV----- 65
             W +++I G+S+  +  L         V +++ DPPY ++       R D+S V     
Sbjct: 176 MSWTNRMILGDSLQAMASLAERENLRGKVQMVYIDPPYGIKFGSNWQTRADNSRVRDGRM 235

Query: 66  ----------DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
                      A  D+W+   S  +Y  + R  L + R +L  +G++++     N+  + 
Sbjct: 236 EDATREVEQIKAFRDTWELGIS--SYLTYLRDRLESARDLLSESGSVFIQIGDENVHLVR 293

Query: 116 TMLQNLN--FWILNDIVWRKSNPMPNFRGRRF--QNAHETLIWASPSPKAKGYTFNY 168
           ++L  +      ++ I ++ ++   +F G      +  + +IW + S     Y   Y
Sbjct: 294 SLLDEVFGSENFVSLIAFKTTSGAGSFAGGTNVLASVADYVIWYARSIDTVKYRQLY 350


>gi|121611088|ref|YP_998895.1| DNA methylase N-4/N-6 domain-containing protein [Verminephrobacter
           eiseniae EF01-2]
 gi|121555728|gb|ABM59877.1| DNA methylase N-4/N-6 domain protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 972

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 83/223 (37%), Gaps = 17/223 (7%)

Query: 49  YNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
           Y        YR  + +   ++     ++  + +DA  R       R   P+G+       
Sbjct: 323 YAKNGAAIKYRQPYRVKGDLSGGATAYNKLDFFDAKERRPATDADRETAPDGS------- 375

Query: 109 HNIFRIGTMLQNL--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
             +FR   +           N  +  K+ P+    G +        +  +      G T 
Sbjct: 376 -RLFRWDNLTSQSSGGPQFFNVELDGKTIPVGKS-GWKTTTTGMDRLKKAKRVGLAGKTL 433

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
           +Y           M + W   + +G         +KL+  Q    ++ R ++ +T PGD+
Sbjct: 434 SYVRYILDFPVYPMNNSWDDTVTAGF------ASDKLYVVQTNPKVIERCILMTTDPGDL 487

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           +LDP  GSGT+   A++  R +I I+  +  + +A  RI   +
Sbjct: 488 VLDPTCGSGTTAYAAEQWGRRWITIDTSRVALALARARIMGAR 530



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 68/175 (38%), Gaps = 27/175 (15%)

Query: 19  WKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSL--------- 64
           W +++I G+S+ V+  L         V  I+ DPPY ++ N        S          
Sbjct: 164 WANRMILGDSLQVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGNAQH 223

Query: 65  -------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
                  V A  D+W       +Y  + R  L   R +L  +G+++V     N+ R+ T+
Sbjct: 224 ITREPEQVKAFRDTW--RDGIHSYLTYLRDRLTVARDLLTESGSIFVQIGEENVHRVRTV 281

Query: 118 LQNLNFW--ILNDIVWRKSNPMPNFRGRRFQ--NAHETLIWASPSPKAKGYTFNY 168
           L  +      ++ I ++ +    +  G      + +  ++W + +  A  Y   Y
Sbjct: 282 LDEVFGDANFVSQINFKTTGGAGSPTGGTETLASVNNFILWYAKNGAAIKYRQPY 336


>gi|320458211|dbj|BAJ68832.1| hypothetical phage protein [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 408

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPT KP  L   +   +  P  ++LDPF GSGT+    ++        E+   Y+ +   
Sbjct: 338 HPTVKPLDLTRWLARLACPPHGLVLDPFAGSGTTLDACRREGLRCAATELDPTYLPLTAD 397

Query: 264 RIA 266
           R+ 
Sbjct: 398 RLE 400



 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 20/119 (16%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY--NLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            +   ++   L  L     D I  DPPY   L   G++ R D + +              
Sbjct: 11  TLYNTDARR-LPDLLDAPADAIVTDPPYELGLGTAGEVKRWDSTGI-------------- 55

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
              AF   +  A    ++P     V GS     R+   +++  + I + I W  ++ MP
Sbjct: 56  ---AFDPEFWTAMLGTVRPGAFALVFGSPRTWHRLACAMEDAGWLIRDQISWLYASGMP 111


>gi|116513198|ref|YP_812105.1| adenine specific DNA methylase Mod [Lactococcus lactis subsp.
           cremoris SK11]
 gi|116108852|gb|ABJ73992.1| Adenine specific DNA methylase Mod [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 692

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 191 GSERLRNKDGEKLHPT-QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           G  +  NK+G+ + P  +KPE LL +I+  ++  GDI+LD F GSG++ A A K+ R+FI
Sbjct: 486 GETKNVNKEGQVVFPNGKKPERLLGKIIEMASDEGDIVLDFFGGSGSTAAAAMKMNRTFI 545

Query: 250 GIEMKQDYIDIATKRIASV 268
            +E  ++ + +   R+ +V
Sbjct: 546 SLEQIENQVQLELDRLNNV 564



 Score = 61.9 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 71/182 (39%), Gaps = 24/182 (13%)

Query: 5   NSLAINENQNSI-----FEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQ 56
           NS   ++N  S       +  + IIKGN++  L  +  K    V LI+ DPPYN   +  
Sbjct: 158 NSKRYDKNNESTVTEFNEDTDNLIIKGNNLLALHAIKDKYAGKVKLIYIDPPYNTGSDSF 217

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
           LY              D+F +  A+  F +  L   R  L+ +G +++         +  
Sbjct: 218 LY-------------NDRF-NHSAWLTFMKNRLEIAREFLQEDGYIFIQTDDSEQAYLKV 263

Query: 117 MLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
           ++ ++      +N I     N      G   +   + + + +   K + ++ N+ A+   
Sbjct: 264 LMDSIFGSRQYVNTISVLFKNIAGASGGGEDKRLKKNVEYITVYSKNREHSSNFHAVYEY 323

Query: 175 NE 176
            +
Sbjct: 324 KK 325


>gi|307310194|ref|ZP_07589843.1| DNA methylase N-4/N-6 domain protein [Sinorhizobium meliloti
           BL225C]
 gi|306899746|gb|EFN30371.1| DNA methylase N-4/N-6 domain protein [Sinorhizobium meliloti
           BL225C]
          Length = 370

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 70/202 (34%), Gaps = 17/202 (8%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           + G++  +   L     D++   PPY L+ +  +         A           E +  
Sbjct: 30  LFGDARCI--PLKPGDADMVVTSPPYWLKRDYGVAGQIGQEPTANAFVQSLLDCMENW-- 85

Query: 84  FTRAWLLACRRVLKPNGTLWVIGSYHNIF-RIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
             ++ +     V    G  +  GS  N   R+    Q+  + I N I+W K   MP+   
Sbjct: 86  --KSIIPKWGSVFINIGDTYHRGSLANTPGRLEIAAQDAGWTIRNRIIWVKDAGMPDPAK 143

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
            R ++ HE +I  +  P+ + Y ++         +    SD          ++  +    
Sbjct: 144 DRLKSRHEYIIHFT--PQRRDYYYDQFGYAEKYGNGTGPSD--------VWQIGLRRDTS 193

Query: 203 LHPTQKPEALLSRILVSSTKPG 224
            H    P  L+ R+L  +    
Sbjct: 194 NHLAPYPVELVDRLLSLACPEQ 215



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           ++     I+LDPF G+GT+   A  + RS IGI++ Q 
Sbjct: 320 NAPFRPGIVLDPFMGTGTTLRAAGDIGRSAIGIDLAQK 357


>gi|258592788|emb|CBE69097.1| putative DNA methylase [NC10 bacterium 'Dutch sediment']
          Length = 940

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 2/100 (2%)

Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKD--GEKLHPTQKPEALLSRILVSSTKPGDIILD 229
           + AN     R    +P+   ++R  +     E+++  Q    ++ R ++ +T PGD++LD
Sbjct: 403 RTANTIRYKRFVGDVPMLPITDRWESTQIGTERIYVVQTAAEVIKRCILMTTDPGDLVLD 462

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           P  GSGT+  VA++  R +I I+  +  + +A  RI   +
Sbjct: 463 PTCGSGTTAYVAEQWGRRWITIDTSRVALALARARIMGAR 502



 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 24/169 (14%)

Query: 17  FEWKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNG-----------QLYRP 60
             W +++I G+S+ V+  L         V  IF DPPY ++ N            +  + 
Sbjct: 140 QNWSNRMILGDSLQVMASLAEREGLRGKVQCIFFDPPYGIKFNSNFQWSTTSRDVKDGKA 199

Query: 61  DH-----SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
           DH       V A  D+W       +Y  + R  L   R +L  +G+++V     N+ R+ 
Sbjct: 200 DHITREPEQVKAFRDTW--RDGIHSYLTYLRDRLAVARDLLTDSGSIFVQIGDENVHRVR 257

Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
            ++  +     N +V         F      N  + ++W      +  Y
Sbjct: 258 AVMDEVFGE-KNFVVLISFQKTGGFESEFLSNTVDYVLWYLKERNSAKY 305


>gi|322691200|ref|YP_004220770.1| phage protein [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320456056|dbj|BAJ66678.1| hypothetical phage protein [Bifidobacterium longum subsp. longum
           JCM 1217]
          Length = 408

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPT KP  L   +   +  P  ++LDPF GSGT+    ++        E+   Y+ +   
Sbjct: 338 HPTVKPLDLTRWLARLACPPHGLVLDPFAGSGTTLDACRREGLRCAATELDPTYLPLTAD 397

Query: 264 RIA 266
           R+ 
Sbjct: 398 RLE 400



 Score = 63.1 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 20/119 (16%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY--NLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            +   ++   L  L     D I  DPPY   L   G++ R D + +              
Sbjct: 11  TLYNADARR-LPGLLDAPADAIVTDPPYELGLGTAGEVKRWDSTGI-------------- 55

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
              AF   +  A   +++P     V GS     R+   +++  + I +   W  ++ MP
Sbjct: 56  ---AFDPEFWTAMLGMVRPGAFALVFGSPRTWHRLACAMEDAGWLIRDQFCWLYASGMP 111


>gi|213692096|ref|YP_002322682.1| DNA methylase N-4/N-6 domain protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523557|gb|ACJ52304.1| DNA methylase N-4/N-6 domain protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 438

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPT KP  L   +   +  P  ++LDPF GSGT+    ++        E+   Y+ +   
Sbjct: 368 HPTVKPLDLTRWLARLACPPHGLVLDPFAGSGTTLDACRREGLRCAATELDPTYLPLTAD 427

Query: 264 RIA 266
           R+ 
Sbjct: 428 RLE 430



 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 20/119 (16%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY--NLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            +   ++   L  L     D I  DPPY   L   G++ R D + +              
Sbjct: 41  TLYNTDARR-LPDLLDAPADAIVTDPPYELGLGTAGEVKRWDSTGI-------------- 85

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
              AF   +  A    ++P     V GS     R+   +++  + I + I W  ++ MP
Sbjct: 86  ---AFDPEFWTAMLGTVRPGAFALVFGSPRTWHRLACAMEDAGWLIRDQISWLYASGMP 141


>gi|163784951|ref|ZP_02179703.1| putative DNA modification methylase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879778|gb|EDP73530.1| putative DNA modification methylase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 280

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 5/107 (4%)

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
                   EKLHP       ++R++   TK GD +LDPF G G++        R   GIE
Sbjct: 40  NNHPETKYEKLHPAPFSYLDVARLIKFFTKKGDRVLDPFLGVGSTIKACLDTDREGYGIE 99

Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLTG-----KRTEPRVAFNLLV 294
           + + + +I  KR+         E  ++ G     K+  P   F+ ++
Sbjct: 100 LSEKWCEITKKRLKEESNFIIDEQHLICGDSREIKKYFPNNYFDFII 146



 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 8/116 (6%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY-NL--QLNGQLYR 59
           +     + E  N I + +  +I G+S  + +  P    D I   PPY N+  +++ +   
Sbjct: 106 EITKKRLKEESNFIIDEQH-LICGDSREIKKYFPNNYFDFIITSPPYWNILKKIDRKTKE 164

Query: 60  PDHSLVDAVTDSWDK-FSSFEAYDAFTRA---WLLACRRVLKPNGTLWVIGSYHNI 111
              + +D V    DK   + E Y  F +        C  VLK    + +I S  N 
Sbjct: 165 RVENGLDVVYSKSDKDLGNIEDYHTFLKELTKIFFKCYDVLKNEKYMCIIVSDFNH 220


>gi|37527336|ref|NP_930680.1| hypothetical protein plu3462 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36786770|emb|CAE15836.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 157

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 17/131 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
            +I  +S+  ++ LP   +DLI  DPPY                      WD ++    A
Sbjct: 11  TLINDDSLRFIKTLPDNCIDLIATDPPYF---------------RVKECGWDRQWEDVTA 55

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y A+    L    RVLKPNG+L++            +++   F +LN I+W K +     
Sbjct: 56  YLAWLDEVLTEFWRVLKPNGSLYIFCGSRLASDTEILVRE-RFNVLNHIIWAKPSGPWRR 114

Query: 141 RGRRFQNAHET 151
           + +    A+  
Sbjct: 115 QNKESLRAYFP 125


>gi|124267569|ref|YP_001021573.1| DNA modification methylase-like protein [Methylibium petroleiphilum
           PM1]
 gi|124260344|gb|ABM95338.1| DNA modification methylase-like protein [Methylibium petroleiphilum
           PM1]
          Length = 307

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 1/89 (1%)

Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
            E  ++  +           + N   E  HP   P  +  R+    +  G+ +LDPF G+
Sbjct: 10  KEKSKLTKEEWRDYTKTVWSIANTSHED-HPAVFPLEIPHRLTKLFSFYGETVLDPFAGT 68

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           GT+   A  L R  I ++   DY +I  K
Sbjct: 69  GTTARAAIPLGRRAICVDQNADYTEIIKK 97



 Score = 56.1 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 61/168 (36%), Gaps = 39/168 (23%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++ G+S   ++ + + SV L+   PPY  + +    + +   ++  +D          + 
Sbjct: 115 VVNGDSRK-MDFVESDSVGLVVTSPPYWNKADYGDSKRNLGTIERYSD----------FI 163

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIF------------RIGTMLQNLNFWILNDIV 130
              R     C R+L P   L V+ +  N                  +L+ + F ++N+I+
Sbjct: 164 EGIRPVFEECYRILTPGRKLCVVTANVNQHTDHGLLTFPLATDFAVLLRQIGFVMINEII 223

Query: 131 WRKSN----------------PMPNFRGRRFQNAHETLIWASPSPKAK 162
           W K                    P      F+N HE ++  +  P+ K
Sbjct: 224 WSKDATGGKWGSYGAQRPIFGSYPYPPNFLFKNVHEYILIFAKPPRTK 271


>gi|291622002|emb|CAX65035.1| gp54 protein [Vibrio phage VP58.5]
          Length = 216

 Score = 76.6 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 40/84 (47%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P     +    +     HP +KP  L+  I+ +S + G ++LDPF GSG +     +L 
Sbjct: 125 VPYTDVWDFDPVQYYPGKHPCEKPLPLMRHIVSTSAREGMVVLDPFMGSGATAKACIELG 184

Query: 246 RSFIGIEMKQDYIDIATKRIASVQ 269
             F+G+EM  D      K +A  +
Sbjct: 185 CHFVGVEMDDDIFSATAKSLAEYK 208


>gi|207093010|ref|ZP_03240797.1| type II adenine methyltransferase [Helicobacter pylori
          HPKX_438_AG0C1]
          Length = 92

 Score = 76.6 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 5/88 (5%)

Query: 13 QNSIFEWKDKI---IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
             IF+ +D++    +G+   VL +      DLIFADPPY L  +G L      +V    
Sbjct: 7  SRPIFKSQDQLFTLYQGDCNEVLPQFE-NQFDLIFADPPYFLSNDG-LSIQSGKIVSVNK 64

Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLK 97
            WDK +     D F   W+   ++ LK
Sbjct: 65 GDWDKENGINGIDEFNYQWINNAKKALK 92


>gi|124008287|ref|ZP_01692983.1| site-specific DNA-methyltransferase [Microscilla marina ATCC 23134]
 gi|123986236|gb|EAY26065.1| site-specific DNA-methyltransferase [Microscilla marina ATCC 23134]
          Length = 678

 Score = 76.2 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 69/179 (38%), Gaps = 14/179 (7%)

Query: 20  KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQ---------LNGQLYRPDHSLVDA 67
           ++  I+G+++ VL+ L       + +I+ DPPYN            +   +  D +  + 
Sbjct: 89  QNLFIQGDNLEVLKTLQKSYLGKIKMIYIDPPYNTGNDFVYEDDFRDNLSHYIDKAGKNL 148

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWI 125
            ++  D       +  F    L   + +LK +G ++V    H +  +  ++  +      
Sbjct: 149 HSNKKDSGRFHATWLNFMYPRLKIAKSLLKDDGAIFVSIDDHEVHNLRALMNEIFGEENF 208

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
           +  ++W++     N       + HE L+  S S   K    + D  K  N D   R  W
Sbjct: 209 MGILLWKRRQNADNRNQSNVSSDHEYLLLYSKSENTKFLGKSIDLSKYKNPDNDPRGPW 267



 Score = 62.7 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 89/243 (36%), Gaps = 24/243 (9%)

Query: 106 GSYHNIFRIGTMLQNLNFWILNDIV-WRKSNPMPNFRGRRFQNAHET---------LIWA 155
           G + +I   G   ++    +  DIV  + +   P    R +  + E          +++ 
Sbjct: 265 GPWASIDLSGLATKDQRPNLHYDIVDPKTNLSYPPNPNRGWSKSKENVLKMIEEGRILFP 324

Query: 156 SP---SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
                 P+ K +  N +             +      +G+  +    G K+    KP  L
Sbjct: 325 KKVTGRPREKKFLSNLNQTVTGFSTWLESDNVGF-TTNGTRDIAEVMGGKIFNFPKPVKL 383

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYIDIATKRIA 266
           +  ++  +T   DIILD F GS T+     +L       R FI ++++++    +  R A
Sbjct: 384 IQTLIKQATTSQDIILDFFAGSATTAQAVTELNKEDGGNRKFILVQLEEETPPKSEARKA 443

Query: 267 SVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ---PGQILTNAQGNISATVCADGTLI 323
             + +  I    +     + +   N L E  ++Q     Q+L N +  + A    D TL 
Sbjct: 444 GYEHIAQISKDRIRKVIEKIQTEQNSL-EAEVMQLEDDLQMLKNEKDQLVAEQNIDLTLF 502

Query: 324 SGT 326
              
Sbjct: 503 DND 505


>gi|260219729|emb|CBA26574.1| Type III restriction-modification system EcoP15I enzyme mod
           [Curvibacter putative symbiont of Hydra magnipapillata]
          Length = 565

 Score = 76.2 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 62/159 (38%), Gaps = 17/159 (10%)

Query: 21  DKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLY-------RPDHSLVDAVTD 70
           ++II G+++  L+ L  +    V+ I+ DPPYN    G +Y       +    L   V  
Sbjct: 43  NRIIHGDNLEALKSLLPEFEGKVNCIYIDPPYNTGNEGWVYNDNVNDPKIKKWLGQVVGK 102

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL---NFWILN 127
             +  S  + +       L    R+L  +G  +V    + +     +L+ +     W+  
Sbjct: 103 EGEDLSRHDKWLCMMYPRLKLLHRLLADDGIFFVSLDRNEMATFKLLLEEIFGAGNWV-G 161

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
           +IVWR    + +         HE ++  + S    G  +
Sbjct: 162 EIVWRN---VTDNNPTNISLEHEYILCYAKSKNLIGPIW 197



 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 32/81 (39%), Gaps = 6/81 (7%)

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRS 247
           +    DG K     KP  LL  +     K   IILD F GSGT+     KL       R 
Sbjct: 344 KNIFSDGSKPFDYPKPSILLEDLFGFVMKSESIILDSFAGSGTTAHAVLKLNAQDGGNRR 403

Query: 248 FIGIEMKQDYIDIATKRIASV 268
           FI  EM      I  +R+  V
Sbjct: 404 FILCEMMDYAESITAERVRRV 424


>gi|73661337|ref|YP_300118.1| DNA modification methylase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72493852|dbj|BAE17173.1| putative DNA modification methylase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 259

 Score = 76.2 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 38/64 (59%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP + PE L  + ++  +K  +++ DPF G G++   +++  R F GIE++  +I +A  
Sbjct: 33  HPGKFPEELAEKFILFFSKKNEVVFDPFMGVGSTAVASEENNREFKGIELESSFISMANS 92

Query: 264 RIAS 267
           R+ +
Sbjct: 93  RLEN 96



 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 55/179 (30%), Gaps = 26/179 (14%)

Query: 14  NSIFEWKDKIIKGNSI--SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD----- 66
           NS  E  + II+G+S      + +     D I   PPY   L       +    D     
Sbjct: 91  NSRLENNNNIIEGDSRYAKYYKDIE---ADFIITSPPYWNMLGKSRGNSNSQHKDRIQKN 147

Query: 67  ---AVTDSWDKFSSFEAYDAFTRA---WLLACRRVLKPNGTLWVIGS---YHNIFRIGTM 117
                +DS +   + + Y  F +        C +VLK    + ++       N   +   
Sbjct: 148 LDLVYSDSSNDLGNIDDYSTFMKNLQKVFKNCNKVLKSRKYMVIVVQNFRDSNGEYVTFA 207

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
             ++ +       +              Q+  +  IW  PS        +Y  +   NE
Sbjct: 208 WDSVKYVEREGFTFVGEQIW-------CQDNKKLGIWGFPSTFISNNHHHYCLVFRKNE 259


>gi|332672404|ref|YP_004421648.1| possible methylase [Campylobacter phage NCTC12673]
 gi|327493581|gb|AEA86440.1| possible methylase [Campylobacter phage NCTC12673]
          Length = 392

 Score = 76.2 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/63 (50%), Positives = 43/63 (68%), Gaps = 2/63 (3%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRI 265
           QKPE LL  IL  ST   D+++D F GSGT+ AVA K++R +IGIE + DYI+ I  +R+
Sbjct: 299 QKPEYLLKIILDLSTNENDLVMDFFAGSGTTLAVAHKMKRKWIGIE-QMDYIETITKERL 357

Query: 266 ASV 268
             V
Sbjct: 358 KKV 360



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 68/195 (34%), Gaps = 24/195 (12%)

Query: 20  KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVD---------- 66
           K+ +IKG+++ V+  +       V LI+ DPPYN       Y      +D          
Sbjct: 5   KNYLIKGDNLEVMNSILPFYKGKVKLIYIDPPYNTGNKNFHYNDSFESIDLIIKYFNVDE 64

Query: 67  ---AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
                  S DKF   + +  F +  L   R  LK +G ++V    +    +  ++  +  
Sbjct: 65  EEAKKIKSQDKFIGSKVWLKFMKERLEVAREFLKDDGVIFVQCDDNEQAYLKVLMDEI-- 122

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
           +   + V      M   +G +  N H         PK K Y   Y      +   Q+R  
Sbjct: 123 FGRENFVNCIVVKMNESKGLKNANCH------KKLPKNKEYILLYKKQDNKSILKQIRLK 176

Query: 184 WLIPICSGSERLRNK 198
                 S   +  NK
Sbjct: 177 KTQNELSSYIKYYNK 191


>gi|294013138|ref|YP_003546598.1| adenine-specific DNA-methyltransferase [Sphingobium japonicum
           UT26S]
 gi|292676468|dbj|BAI97986.1| adenine-specific DNA-methyltransferase [Sphingobium japonicum
           UT26S]
          Length = 646

 Score = 76.2 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 34/50 (68%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           +PTQKP  LL RI+ +S+ PGD++ DPF G GT+   A K  R +IG ++
Sbjct: 417 YPTQKPVPLLDRIIQASSNPGDVVFDPFCGCGTTIYSAVKNERRWIGCDI 466



 Score = 76.2 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 77/202 (38%), Gaps = 52/202 (25%)

Query: 21  DKIIKGNSISVLE-KLPAKSVDLIFADPP------YNLQLNGQLYRPDHSLVDAVTDSWD 73
           +++  G+++ +++ KL  +SVDLI+ DPP      YNL       +P    V A  D+W+
Sbjct: 97  NRLYYGDNLDIMQNKLGLESVDLIYLDPPFKSDTNYNLMYRNLTGKPVPEQVHAFADTWE 156

Query: 74  KFSSFE--------------------------------------AYDAFTRAWLLACRRV 95
             +  E                                      AY  +    +L  + +
Sbjct: 157 FDAEKERIAREIPTLMIQQGIDPDAVQFWTLWVDALRKTNRELLAYLIYMVQRMLFMKSI 216

Query: 96  LKPNGTLWVIGSYHNIFRIGTMLQNLNFW--ILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           LK  G++++         I  M+  +       N+I+W+++    +   +R+   H+ ++
Sbjct: 217 LKRTGSIYLHCDPTASHYIKVMMDAIFGHDNFRNEIIWKRT--GSHGGSKRWGPVHDVIL 274

Query: 154 WASPSPKAKGYTFNYDALKAAN 175
           + +    +  YT+N    +   
Sbjct: 275 FYTK---SSKYTWNRVFQEYEK 293


>gi|197294754|ref|YP_001799295.1| Putative methylase [Candidatus Phytoplasma australiense]
 gi|171854081|emb|CAM12056.1| Putative methylase [Candidatus Phytoplasma australiense]
          Length = 191

 Score = 76.2 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 2/101 (1%)

Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVS--STKPGDII 227
           A       +    D  I      +  ++     +HPTQKP+ L ++++ S         +
Sbjct: 91  AGFKERFFLCKTCDCKIFRSKELKNHQSPHQTIIHPTQKPQMLTNKLIDSAIMENQKGNV 150

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           L PF GSG+   VAKK   ++IGIE+  DY+ +  + +  +
Sbjct: 151 LIPFAGSGSECLVAKKKNLNYIGIEINPDYVMLINEALKKI 191


>gi|262369475|ref|ZP_06062803.1| DNA methylase N-4/N-6 [Acinetobacter johnsonii SH046]
 gi|262315543|gb|EEY96582.1| DNA methylase N-4/N-6 [Acinetobacter johnsonii SH046]
          Length = 515

 Score = 76.2 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 36/62 (58%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
            KPE LL+ +L   T   D+ILD F GSGT+ AVA K+ R +IGIEM +        R+ 
Sbjct: 306 PKPEGLLNILLECCTDKNDLILDSFLGSGTTAAVAHKMGRRYIGIEMGEHAKTHVIPRLE 365

Query: 267 SV 268
            V
Sbjct: 366 KV 367



 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 67/171 (39%), Gaps = 20/171 (11%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + II+G+++  L+ L       V  IF DPPYN Q              +  + +D    
Sbjct: 39  NLIIQGDNLQALKALLPLYGGQVKCIFIDPPYNTQ--------------SAFEHYDDKLE 84

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSN 135
              + +     L   + +L  +G++W+    +    +  M   +      L++ VW+KS 
Sbjct: 85  HAQWLSMMYPRLQLLKELLAEDGSIWITLDDNEAHYLKVMCDEVFGRKNFLSNFVWQKSY 144

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
                + + F   HE ++  + + +     +     +A  +  + + + ++
Sbjct: 145 GGG-SKAKWFVGLHENILCYAKNTEVFPEMWLPPDPEAVKKYYKYQDEKIL 194


>gi|294787786|ref|ZP_06753030.1| DNA (cytosine-5-)-methyltransferase [Simonsiella muelleri ATCC
           29453]
 gi|294484079|gb|EFG31762.1| DNA (cytosine-5-)-methyltransferase [Simonsiella muelleri ATCC
           29453]
          Length = 348

 Score = 76.2 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 55/142 (38%), Gaps = 23/142 (16%)

Query: 133 KSNPMPNFRGRRFQNA--------HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
               M   +GR ++++           L+  S +   +   F  D      +D+    D 
Sbjct: 213 MWRGMMPPKGRHWRSSPDDLDELDKHGLLEWSKNGVPRIKKFADDHKGKKIQDIWRYKDP 272

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
             PI               +PT+K   +L  I+  S+ P  I+LD F GSG++   A  L
Sbjct: 273 AYPI---------------YPTEKNAEMLQMIIGQSSNPDSIVLDCFAGSGSTLWAAHCL 317

Query: 245 RRSFIGIEMKQDYIDIATKRIA 266
           +R +IGI+     I    +R  
Sbjct: 318 QRRWIGIDASDVAITTIQQRFG 339



 Score = 66.9 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 66/164 (40%), Gaps = 12/164 (7%)

Query: 23  IIKGNSISVLEKLPA----KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD---SWDKF 75
           +  G++   L  L        +DLI+ DPPYN Q    +     S +        +++  
Sbjct: 19  LFSGDNFHALSVLLNSGYHGKIDLIYIDPPYNTQQIFTISDERISTISRTNHGITAYEDN 78

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRK 133
            S   Y  F R  L+  R +L   G+++V         +  ++  +       NDI   K
Sbjct: 79  RSMANYLEFMRERLILMRELLSSCGSIYVHIDSKVGHYLKIIMDEVFGADNFKNDIARIK 138

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
           SNP  NF  R F N  + +++ +    AK   FN   +   +ED
Sbjct: 139 SNP-KNFSRRAFGNEKDMVLFYAK--NAKKNIFNNITIPLTDED 179


>gi|289549055|ref|YP_003474043.1| DNA methylase N-4/N-6 domain protein [Thermocrinis albus DSM 14484]
 gi|289182672|gb|ADC89916.1| DNA methylase N-4/N-6 domain protein [Thermocrinis albus DSM 14484]
          Length = 841

 Score = 76.2 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 57/321 (17%), Positives = 106/321 (33%), Gaps = 82/321 (25%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQLNGQ-LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
           ++L K   + V  I+ DPP+N + +    Y   +     +T   ++          T + 
Sbjct: 391 TILPKFK-EKVQTIYIDPPFNKEQDADYFYSVKYKDATWITMLENRLRLARDLLRDTGSI 449

Query: 89  LLACRRVLKPNGTLW----------------------------VIGSYHNIFRIGTMLQN 120
            + C      NG ++                            + G +  +  IG M  N
Sbjct: 450 FVRC----DYNGNMYVRLLMNEIFGEENFRNEIVVKRGAPKSAMFGQFEGVKSIGVMYDN 505

Query: 121 LNFWILNDIVWRKSNPMPNFR--------------GRRFQNAHE--------TLIWASPS 158
           + ++  N         +P  +              G R    +E           W    
Sbjct: 506 IFWYSSNPETRYHGFKIPIKKKGGYWSTFYDMKPSGERPTMRYELFGLLPPKNYYWKWGK 565

Query: 159 PKAKGYTFNYDALKAANEDVQMRSD---------WLIPICSGSERLRNKDGEK------- 202
            +A     NY      +++     +           I + +G  +      E+       
Sbjct: 566 ERALKAVENYKKYLEESKETGESIESYSMRTGIRDFIKLENGVVKYWVPIREEDFLDNNW 625

Query: 203 ----------LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
                        T+  E LL R++ S++  GD+++D F GSGT+ AVA KL+R +IG+E
Sbjct: 626 LDIPGYSSGWGFKTENSEILLKRVIESTSNEGDLVMDFFLGSGTTTAVAHKLKRKWIGVE 685

Query: 253 MKQDYIDIATKRIASVQPLGN 273
           M + +  +   R+  V     
Sbjct: 686 MGEHFYTVVLPRMKKVLAYDK 706


>gi|328907821|gb|EGG27584.1| DNA restriction-modification system, DNA methylase
           [Propionibacterium sp. P08]
          Length = 603

 Score = 76.2 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            G     T KPE LL R+L+ ST  GD++LD F GS T+ AVA+K+ R ++  E+ +D  
Sbjct: 328 PGVTAFATPKPERLLQRVLLISTGAGDLVLDAFAGSETTAAVAQKMGRRWVTCELVEDTF 387

Query: 259 D-IATKRIASV 268
           +     R+A V
Sbjct: 388 ERFTKARLAKV 398



 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 69/202 (34%), Gaps = 34/202 (16%)

Query: 26  GNSISVLEKLPA------KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           G+ +  L ++P         V LI+ DPP+N                    S++      
Sbjct: 18  GDVLEALTRVPELAEKYVGKVKLIYIDPPFNTA--------------QTFASYEDNLEHS 63

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPM 137
            +    R  LL  +++L   G++WV   Y    ++   L  +      + +IVW+K++  
Sbjct: 64  VWLTMMRDRLLHMKKLLSSGGSIWVHLDYAENHKMRVSLDEVFGGENFVAEIVWQKADSG 123

Query: 138 PNFRGRRFQNAHETLIWASP--SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            N       +    L++         +    +    + AN D   R  W +      +  
Sbjct: 124 RNDATYFSTDQDVLLVYRKSALFELNRLPRPDAMNSRFANPDHDPRGPWAMADPCAPDAP 183

Query: 196 RNKD----------GEKLHPTQ 207
            N+           GE ++P Q
Sbjct: 184 NNQPMVYAIQHPMTGELMYPAQ 205


>gi|327399854|ref|YP_004346885.1| type III restriction-modification system methylation subunit
           [Lactobacillus amylovorus GRL 1112]
 gi|327182524|gb|AEA32959.1| type III restriction-modification system methylation subunit
           [Lactobacillus amylovorus GRL 1112]
          Length = 645

 Score = 76.2 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IAT 262
               KPE+L++  + + TK  DI+LD F GSGT+ A A K+ R FIGI+ + DYI  IA 
Sbjct: 453 FNNPKPESLIAFFIRAITKENDIVLDFFMGSGTTQAAALKMHRRFIGID-QMDYIKTIAV 511

Query: 263 KRIASV 268
            R+  V
Sbjct: 512 PRLRKV 517



 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 74/213 (34%), Gaps = 18/213 (8%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  +       + LI+ DPPY            +      + +++    
Sbjct: 177 NLIIKGNNLLALYSIKDRYAGKIKLIYLDPPYYF----------NKQKSTDSFAYNTNYK 226

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNP 136
              +  F +  L  C+ +L  NG + V         +  ++  +       +    +   
Sbjct: 227 LSTWLTFMKNRLEVCKELLCDNGAIIVSIDDDGQAYLKVLMDEIFGQNNFVETFLWRKTD 286

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN--EDVQMRSDWLIPICSGSER 194
             +  G + ++  E L        ++ +         A   + V   S+   P  S   +
Sbjct: 287 NADSLGNKSRSGVEYLHAYVLKNNSEKWIGKESENGDAPLLKKVNNISERTFPAGSIHFK 346

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
           + +   +K H       LL+ ++V ++   + +
Sbjct: 347 IDDGVYKKGHYA--NADLLNDLIVKNSVNENNV 377


>gi|314927553|gb|EFS91384.1| DNA (cytosine-5-)-methyltransferase [Propionibacterium acnes
           HL044PA1]
          Length = 600

 Score = 76.2 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            G     T KPE LL R+L+ ST  GD++LD F GS T+ AVA+K+ R ++  E+ +D  
Sbjct: 325 PGVTAFATPKPERLLQRVLLISTGAGDLVLDAFAGSETTAAVAQKMGRRWVTCELVEDTF 384

Query: 259 D-IATKRIASV 268
           +     R+A V
Sbjct: 385 ERFTKARLAKV 395



 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 69/202 (34%), Gaps = 34/202 (16%)

Query: 26  GNSISVLEKLPA------KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           G+ +  L ++P         V LI+ DPP+N                    S++      
Sbjct: 15  GDVLEALTRVPELAEKYVGKVKLIYIDPPFNTA--------------QTFASYEDNLEHS 60

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPM 137
            +    R  LL  +++L   G++WV   Y    ++   L  +      + +IVW+K++  
Sbjct: 61  VWLTMMRDRLLHMKKLLSSGGSIWVHLDYAENHKMRVSLDEVFGGENFVAEIVWQKADSG 120

Query: 138 PNFRGRRFQNAHETLIWASP--SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            N       +    L++         +    +    + AN D   R  W +      +  
Sbjct: 121 RNDATYFSTDQDVLLVYRKSALFELNRLPRPDAMNSRFANPDHDPRGPWAMADPCAPDAP 180

Query: 196 RNKD----------GEKLHPTQ 207
            N+           GE ++P Q
Sbjct: 181 NNQPMVYAIQHPMTGELMYPAQ 202


>gi|313837569|gb|EFS75283.1| DNA (cytosine-5-)-methyltransferase [Propionibacterium acnes
           HL037PA2]
 gi|314972508|gb|EFT16605.1| DNA (cytosine-5-)-methyltransferase [Propionibacterium acnes
           HL037PA3]
          Length = 577

 Score = 76.2 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            G     T KPE LL R+L+ ST  GD++LD F GS T+ AVA+K+ R ++  E+ +D  
Sbjct: 302 PGVTAFATPKPERLLQRVLLISTGAGDLVLDAFAGSETTAAVAQKMGRRWVTCELVEDTF 361

Query: 259 D-IATKRIASV 268
           +     R+A V
Sbjct: 362 ERFTKARLAKV 372



 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 66/193 (34%), Gaps = 31/193 (16%)

Query: 32  LEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
           + +L  K    V LI+ DPP+N                    S++       +    R  
Sbjct: 1   MPELAEKYVGKVKLIYIDPPFNTA--------------QTFASYEDNLEHSVWLTMMRDR 46

Query: 89  LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMPNFRGRRFQ 146
           LL  +++L   G++WV   Y    ++   L  +      + +IVW+K++   N       
Sbjct: 47  LLHMKKLLSSGGSIWVHLDYAENHKMRVSLDEVFGGENFVAEIVWQKADSGRNDATYFST 106

Query: 147 NAHETLIWASP--SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD----- 199
           +    L++         +    +    + AN D   R  W +      +   N+      
Sbjct: 107 DQDVLLVYRKSALFELNRLPRPDAMNSRFANPDHDPRGPWAMADPCAPDAPNNQPMVYAI 166

Query: 200 -----GEKLHPTQ 207
                GE ++P Q
Sbjct: 167 QHPMTGELMYPAQ 179


>gi|82544406|ref|YP_408353.1| DNA adenine methyltransferase encoded by prophage [Shigella boydii
           Sb227]
 gi|81245817|gb|ABB66525.1| putative DNA adenine methyltransferase encoded by prophage
           [Shigella boydii Sb227]
 gi|320184645|gb|EFW59441.1| putative DNA methylase [Shigella flexneri CDC 796-83]
 gi|332094452|gb|EGI99501.1| hypothetical protein SB359474_2217 [Shigella boydii 3594-74]
          Length = 95

 Score = 76.2 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 16/105 (15%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAYDAF 84
            + +  +  LP  SVDLI  DPPY                    + WD ++   + Y  +
Sbjct: 6   ADCLEFIWSLPENSVDLIVTDPPYF---------------KVKPEGWDNQWKGDDDYLKW 50

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
               L    RVLKP G+L++   +     I  M++     + + I
Sbjct: 51  LEQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRERFSVLNHII 95


>gi|317501632|ref|ZP_07959824.1| site-specific DNA-methyltransferase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316896975|gb|EFV19054.1| site-specific DNA-methyltransferase [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 668

 Score = 75.8 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           + TQKPEALL+RI+ SS+    I+ D F GSG + AVA KL R FI  ++  + +     
Sbjct: 343 YSTQKPEALLNRIITSSSNENMIVADFFGGSGVTAAVANKLARKFIHCDIGLNSVQTTRD 402

Query: 264 RIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           R+  V      ++  +       R     + +   + PG    ++  +      +D  L
Sbjct: 403 RL--VADGAEFDVLEIKDGVQLYRNPVQTMDKIKFLIPGLKNEDSLDSFWEGAISDSKL 459



 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 70/215 (32%), Gaps = 34/215 (15%)

Query: 21  DKIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLY---RPDHSLVDA-------- 67
           + +I+G  +S    L  +   VDL++ DPP+    +       R +  + +         
Sbjct: 60  NMVIRGECVSACAYLKEQGIQVDLVYIDPPFASGADYAKKVYIRRNPKVAEVIAQAEQEL 119

Query: 68  ------------VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
                         D WDK    E Y  +    L+A + V+  N +++V   +H    + 
Sbjct: 120 DVDELKAFEEKMYGDVWDK----EKYLNWMYENLMAIKSVMSENASIYVHIDWHIGHYVK 175

Query: 116 TMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP---SPKAKGYTFNYDAL 171
            +L  +       + +        N   + +    +++ + S     P    YT  Y   
Sbjct: 176 ILLDEVFGEDNFRNEITWVRTASHNDSKQNYSRVKDSIFFYSRSEEYPFNIQYTP-YTEE 234

Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
             A+E  +  S       +  +          H T
Sbjct: 235 YIADEWTKAPSGRYYKFENMLDPQNKMAAYDFHGT 269


>gi|163756940|ref|ZP_02164047.1| DNA methylase N-4/N-6 domain protein [Kordia algicida OT-1]
 gi|161323059|gb|EDP94401.1| DNA methylase N-4/N-6 domain protein [Kordia algicida OT-1]
          Length = 639

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 40/74 (54%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L N+ G      +KPE LL R++   T  GD +LD F GSG++   A K+ R +IG+E+ 
Sbjct: 401 LHNEGGVDFRKGKKPEKLLQRLIELVTDEGDTVLDIFGGSGSTFGTAHKMNRKWIGVEIG 460

Query: 255 QDYIDIATKRIASV 268
                    R+++V
Sbjct: 461 NHAETHIIPRLSAV 474



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 79/243 (32%), Gaps = 36/243 (14%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLE-------KLPAK-SVDLIFADPPYNLQLN 54
           ++ ++   +N+    + ++ +IKG+++  L        KLP    V  I+ DPPYN    
Sbjct: 91  EEFTIQEIDNEEDALDIENMLIKGDNLLALNTLKKHFDKLPDNEKVKCIYIDPPYNTG-- 148

Query: 55  GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI 114
                       +  D +D       +    R  L   ++ L+ +GT+++      +  +
Sbjct: 149 ------------SAFDHYDDNFKHSEWLTLMRDRLTILKKTLQDSGTIFISIDNEELPYL 196

Query: 115 GTMLQNL-NFWILNDIVW--RKSNPMPNFRGRRFQNAHETLI--------WASPSPKAKG 163
             ++ ++       +I+   R S            N  E ++        W      +  
Sbjct: 197 MVLMDDIFGKENRKNIITLKRGSATGAKVINPGLVNISEFILVYSNDIENWKPNKLYSGK 256

Query: 164 YTFNYDALKAANEDVQMRSDWLIPIC---SGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
                 +    N D     +W          S     K   K H     E  ++  +  +
Sbjct: 257 SRDERYSTFITNYDNTNFENWKFCSLLEAFASFHKIEKRQVKKHFGSSFEDEITNFITDN 316

Query: 221 TKP 223
           ++ 
Sbjct: 317 SER 319


>gi|308271376|emb|CBX27984.1| hypothetical protein N47_G33080 [uncultured Desulfobacterium sp.]
          Length = 1093

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 48/128 (37%)

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
           G         L        A     N ++                   + +        +
Sbjct: 370 GPNHHWKTNPLPGIKRLEFADRLQINGNSPNYIRFINDYPVVEYTTQWNDTAIAGFSGDK 429

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K +  +    ++ R ++ +T PGD++LDP  GSGT+  VA++  R +I I+  +  + +A
Sbjct: 430 KRYVVETSTKVIERCIIMTTDPGDLVLDPTCGSGTTVYVAEQWGRRWITIDTSRVALALA 489

Query: 262 TKRIASVQ 269
             RI   +
Sbjct: 490 RARIMGAR 497



 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 55/166 (33%), Gaps = 23/166 (13%)

Query: 18  EWKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSL-------- 64
            W +++I G+S+ V+  L         V  I+ DPPY ++ N        S         
Sbjct: 131 NWSNRMILGDSLQVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGNVD 190

Query: 65  --------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
                   V A  D+W       +Y  + R  L   R +L  +G+++V     N+ R+  
Sbjct: 191 HITREPEQVKAFRDTW--RDGIHSYLTYLRDRLTVARDLLTESGSIFVQIGDENVHRVRA 248

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
           ++  +        +               ++    + +       K
Sbjct: 249 LMDEVFGDTNFISLIHFQTTTGQASDLLPRSGDYVIWYGKNRNNIK 294


>gi|167585152|ref|ZP_02377540.1| putative modification methylase [Burkholderia ubonensis Bu]
          Length = 963

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 81/213 (38%), Gaps = 31/213 (14%)

Query: 19  WKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLN-----------------GQ 56
           W++++I G+S+ V+  L         V  I+ DPPY ++ N                 G 
Sbjct: 142 WQNRMILGDSLQVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGNAGH 201

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
           + R +   V A  D+W       +Y  + R  L+  R +L  +G+++V     N+ R+  
Sbjct: 202 ITR-EPEQVKAFRDTW--RDGIHSYLTYLRDRLMVARDLLTESGSIFVQIGDENVHRVRA 258

Query: 117 MLQNL-NFWILNDIVWRK---SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
           +L  +        ++  K       P    +   +  + LIW +   ++  Y   Y A +
Sbjct: 259 VLDEVFGDENACGLIGYKKTTGAGSPAIGTQVIASVTDYLIWYAKDKRSVKYRQLYLAKE 318

Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
           A  E     +    P   G+     K GE   P
Sbjct: 319 AGEEGAGSYNRLQAP--DGAFIRSLKSGETFTP 349



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 39/69 (56%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           EK +  Q     + R L+ +T PGD++LDP  GSGT+  VA++  R +I I+  +  + +
Sbjct: 443 EKTYVVQSGIKAVQRCLLMTTDPGDLVLDPTCGSGTTAYVAEQWGRRWITIDTSRVALAL 502

Query: 261 ATKRIASVQ 269
           A  RI   +
Sbjct: 503 ARARIMGAR 511


>gi|260913426|ref|ZP_05919905.1| type III restriction-modification system EcoP15I [Pasteurella
           dagmatis ATCC 43325]
 gi|260632500|gb|EEX50672.1| type III restriction-modification system EcoP15I [Pasteurella
           dagmatis ATCC 43325]
          Length = 621

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 61/168 (36%), Gaps = 19/168 (11%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSL--- 64
            +Q      ++ +IKG+++ VL+ L       V +I+ DPPYN   +G +Y+ D      
Sbjct: 85  NSQPQNQHSQNLLIKGDNLEVLKHLKNAYANKVKMIYIDPPYNTGSDGFVYQDDRKFTPE 144

Query: 65  ---------VDAVTDSWD----KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
                    +D      D    K +S  A+  F    L   R +LK +G +++    +  
Sbjct: 145 QLAKLANMPIDEAKRVLDFTAKKSNSHSAWLTFMYPRLYIARELLKEDGVIFISIDDNEQ 204

Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
            ++  +   +         +  +N             HE +   +   
Sbjct: 205 AQLKLLCDEVFGEENFVAGFIWNNKYTVSNDTDVSYQHEHIFCYAKDK 252



 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 63/182 (34%), Gaps = 23/182 (12%)

Query: 150 ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
           E  ++ + +      T+  +             + +      +E L +  G+ +    K 
Sbjct: 328 EGALYFNKNGGVDKKTYLSEVRDGITCGTVWSYEDVGHSHGNNEELADLLGKGIFNDPKG 387

Query: 210 EALLSRILVSST--KPGDIILDPFFGSGTSGAV---AKKL--RRSFIGIEMK-----QDY 257
             L+ ++L  ST     DI+LD F GSGT+      A K    R FI +++      + Y
Sbjct: 388 IMLIEKLLKLSTSANNKDIVLDFFAGSGTTAHAVFNANKFDGNRKFILVQLDEPPKKEAY 447

Query: 258 -------IDIATKRIA----SVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILT 306
                   DI   RI      +Q         L  K  E    F L  E   + P   L 
Sbjct: 448 KAGYQTIFDITKARIEKSAVKIQQDFPDYQGDLGCKIFEMVPNFRLAQEDENLSPQMALP 507

Query: 307 NA 308
           ++
Sbjct: 508 DS 509


>gi|300741960|ref|ZP_07071981.1| site-specific DNA-methyltransferase (adenine-specific) [Rothia
           dentocariosa M567]
 gi|300381145|gb|EFJ77707.1| site-specific DNA-methyltransferase (adenine-specific) [Rothia
           dentocariosa M567]
          Length = 675

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 42/72 (58%)

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           +   K     + TQKP  LL RI+ +S+  GD++ D F GSGT+ AVA++L R ++  ++
Sbjct: 323 QTLQKGETTGYGTQKPGRLLERIIQASSDEGDLVADFFVGSGTTAAVAERLGRRWVVTDL 382

Query: 254 KQDYIDIATKRI 265
            +    I  KR+
Sbjct: 383 GKPSTMIVRKRL 394



 Score = 70.0 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 80/182 (43%), Gaps = 25/182 (13%)

Query: 18  EWKDKIIKGNSI----------SVLEKLPAKSVDLIFADPPYNLQLNGQLY-RPDHSLVD 66
           E  +++I G+++               L  K +DLI+ DPP++ + + +   +   + +D
Sbjct: 62  ETPNRLIYGDNLLAMAALLAGDEDSPSLRGK-IDLIYIDPPFDSKADYRTKIKLPGTTID 120

Query: 67  ---------AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
                    A +D+W   ++  +Y A     L+  R +L   G+++V   Y     +  +
Sbjct: 121 QKPTVLEQFAYSDTWSDGTA--SYVAMIVPRLVLMRELLAETGSIYVHIDYRVAHYLKII 178

Query: 118 LQNL--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
           L  +      +N+++W  +    + + ++F  +H+T+ +   +PK   +   + A   +N
Sbjct: 179 LDEVFGRESFVNEVIWPGAIGDSSAKNKKFIKSHDTIFFYRKNPKKIVWNEVFQAHAGSN 238

Query: 176 ED 177
           + 
Sbjct: 239 KK 240


>gi|330947577|gb|EGH48133.1| Csp231I DNA methyltransferase [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 127

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 25/119 (21%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY----------------------- 58
           ++  G+ + V+  LPA SV ++  DPPY ++  G+ +                       
Sbjct: 5   ELHLGDCLYVMRSLPANSVHIVVTDPPYGIRFMGKSWDGQDIEDRAAYRASMPSHVEACG 64

Query: 59  -RPDHSLVDAVTDSWD-KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
               H  + A    +D   +   A+ AFT  W   C RVLKP G L    +      + 
Sbjct: 65  PNGGHRSIAAEAGKYDLTPAGMRAFQAFTLDWATECLRVLKPGGHLLSFAAARTYHHMA 123


>gi|261347021|ref|ZP_05974665.1| type III restriction/modification enzyme, methylase subunit
           [Providencia rustigianii DSM 4541]
 gi|282564874|gb|EFB70409.1| type III restriction/modification enzyme, methylase subunit
           [Providencia rustigianii DSM 4541]
          Length = 648

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 44/63 (69%), Gaps = 2/63 (3%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRI 265
           +KPE LL RI+   +   DI+LD   GSGT+ AVA K++R++IGIE + DY + +A +R+
Sbjct: 454 KKPEMLLQRIISLFSDENDIVLDFHLGSGTTSAVAHKMKRNYIGIE-QMDYAETLAIRRL 512

Query: 266 ASV 268
            +V
Sbjct: 513 CNV 515



 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 72/196 (36%), Gaps = 21/196 (10%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLV 65
           I  N  +  + ++ IIKGN++  L  L    ++ V LI+ DPPYN   +   Y       
Sbjct: 162 IENNITNFHDNENLIIKGNNLIALHSLRKTLSRKVKLIYIDPPYNTGNDAFKY------- 214

Query: 66  DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
                  D+F+    +  F +  L A + +L   GT+ +  +      +  +  +    I
Sbjct: 215 ------NDRFNRT-TWLTFMKNRLEAAKDLLSEKGTICIQINDIEFSYLKVLCDS----I 263

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
             +  ++ S  +        + +H +            Y  +   +K   + + +  D+ 
Sbjct: 264 FGEDNFQSSICIQMAHLSGVKMSHSSTTIPKIKEHILIYNKDSKNIKINPQYIPVSWDFA 323

Query: 186 IPICSGSERLRNKDGE 201
               +   +  N + E
Sbjct: 324 FNRYNNFIKKNNSNNE 339


>gi|237756542|ref|ZP_04585068.1| DNA methylase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691301|gb|EEP60383.1| DNA methylase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 241

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 83/268 (30%), Gaps = 58/268 (21%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           + Q   L   +N  S+     ++   +  +  + L  +SVD I  DPPY  +        
Sbjct: 22  LKQWLKLQKPKNPPSL-----ELYCNDIRNYKDILSPESVDWIITDPPYPKKF------- 69

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR-VLKPNGTLWVIGSYHNIFRIGTMLQ 119
                                  +    L      VLKP+G L V+     +  +   L 
Sbjct: 70  ----------------------LWVYDVLSELSDYVLKPHGALIVMVGQSYLPEVINKLS 107

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
               +I            P     +     + ++  +    +     +       N D  
Sbjct: 108 KHLKYIWTLAYLTPGGQSPYIWKVKCNTFWKPVLIFAKDKYSGDSFGDVIKTSTNNND-- 165

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
                                ++ H   + E     I      PG  ILDPF G GT+  
Sbjct: 166 ---------------------KRFHKWGQSEEGFDIIFEKFVFPGQTILDPFVGGGTTAV 204

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           V+ K   SFIGI++ ++ I    +R+ +
Sbjct: 205 VSLKRGCSFIGIDVDENCIKKTEERVKN 232


>gi|148727180|ref|YP_001285656.1| putative N6-methyltransferase [Aeromonas phage phiO18P]
 gi|110349315|gb|ABG73203.1| putative N6-methyltransferase [Aeromonas phage phiO18P]
          Length = 358

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 40/70 (57%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
            +P          +     HP +KP A++  I+ +S++PGD++ D F GSG +G  A +L
Sbjct: 264 EVPFTDVWTYPSVQAYPGKHPCEKPAAMMEHIVRTSSRPGDVVGDFFMGSGATGKAAWRL 323

Query: 245 RRSFIGIEMK 254
            R FIG+E++
Sbjct: 324 GRCFIGVELE 333



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 21/140 (15%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSF 78
           + K++  +S++ L+ +P+ S+DL+  DPPY                      WD ++   
Sbjct: 9   RIKLVNADSLAYLKTMPSHSLDLVAVDPPYF---------------RVKDLDWDNQWPDV 53

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            AY  +    ++   R+LKPNG+L++  S      I  +++  +F +L+ IVW K + + 
Sbjct: 54  TAYLDWLEMCVIEFARILKPNGSLYLFCSPGLNADIELLVRK-HFKVLSHIVWSKPSGVW 112

Query: 139 NFRG----RRFQNAHETLIW 154
           N       R F  A E +I+
Sbjct: 113 NRADKSTLRNFWPASERIIF 132


>gi|319760132|ref|YP_004124071.1| DNA methylase N-4/N-6 domain protein [Alicycliphilus denitrificans
           BC]
 gi|317119738|gb|ADV02226.1| DNA methylase N-4/N-6 domain protein [Alicycliphilus denitrificans
           BC]
          Length = 642

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 75/204 (36%), Gaps = 12/204 (5%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           +   N   E ++ +I+G++   L  L A     + +I+ DPPYN          D    D
Sbjct: 62  SHKPNGCNEHRNLVIEGDNFDALRLLRATHAGKIRVIYIDPPYNTGNK------DWVYND 115

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                 D++     +  F    L   R ++  +G + V  +  N  R+  ++  +     
Sbjct: 116 QFVGKNDRWRH-SLWLEFLYQRLTLARDLMTSDGVILVSINDENRARLELLMDEVFPGRR 174

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
              +  ++    N   +RF + HE ++  + S  A        +    N D   R DW  
Sbjct: 175 LGSLVWRTKDTGNDLTQRFSHVHEHVLVYANSGFAFNGRPTNRSKF-RNPDRDERGDWS- 232

Query: 187 PICSGSERLRNKDGEKLHPTQKPE 210
           P    + +   +     +P Q PE
Sbjct: 233 PQPLTANKSLIERPNTYYPIQDPE 256



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 22/135 (16%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGI-- 251
           G K     KP +L+  +L  +++P DI+LD F GSGT+G V  +L       R FI    
Sbjct: 423 GSKAFQHPKPVSLIKGLLEQASRPDDIVLDFFAGSGTTGQVVLELNAQDRGKRRFILCSS 482

Query: 252 ------EMKQDYI-DIATKRIASV-QPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQ 303
                 E  ++   D+  +R+  V +  GN +   +         A+  L +   + P  
Sbjct: 483 TEANDKEPDKNLCRDVCAERLRRVIEGYGNNDGVPIERG---GEFAYLQLDK---LDPAD 536

Query: 304 ILTNAQGNISATVCA 318
           +  +A+ + ++T+ A
Sbjct: 537 LALDAKPDHASTMLA 551


>gi|325981246|ref|YP_004293648.1| DNA methylase N-4/N-6 domain-containing protein [Nitrosomonas sp.
           AL212]
 gi|325530765|gb|ADZ25486.1| DNA methylase N-4/N-6 domain protein [Nitrosomonas sp. AL212]
          Length = 1039

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 47/96 (48%)

Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
           A    V    D+     +          +K +  Q  E +++R L+ +T PGD+ILDP  
Sbjct: 483 AYPRFVTFHKDFEFAKLTAPWDDTAPAQDKTYVVQTNEIVITRCLLMTTDPGDLILDPTC 542

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           GSGT+  VA+K  R +I  +  +  + +A +R+ + 
Sbjct: 543 GSGTTAFVAEKWGRRWITCDTSRVAVTLAKQRLMTA 578



 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 64/172 (37%), Gaps = 23/172 (13%)

Query: 18  EWKDKIIKGNSISVLEKL-----PAKSVDLIFADPPYNLQL----------------NGQ 56
           +W +++I G+S+ V+  L      A  V +I+ DPPY ++                   +
Sbjct: 218 DWSNRLIAGDSLLVMNSLLQKEGMAGQVQMIYLDPPYGIKYGSNFQPFVNKRDVKDRKDE 277

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
               +  ++ A  D+W+      +Y  + R  LL  + +L  +G+++V  S  N+  +  
Sbjct: 278 DLTQEPEMIKAFRDTWE--LGIHSYLTYLRDRLLLAKELLHESGSVFVQISDENLHHVRE 335

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
           +   +        +      +     +  +   + L+W         Y   Y
Sbjct: 336 ICDEIFGKDNFISLVCFRKKLMPLGAKTLEQMSDFLVWYGRDVSKTKYRHMY 387


>gi|163735089|ref|ZP_02142525.1| Modification methylase DpnIIB [Roseobacter litoralis Och 149]
 gi|161391547|gb|EDQ15880.1| Modification methylase DpnIIB [Roseobacter litoralis Och 149]
          Length = 390

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 3/119 (2%)

Query: 148 AHETLIWASPSPKAKGYTFNYD--ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
           + E+ I+   +    G+       A  A         D        S   R++D   +H 
Sbjct: 243 SKESCIYDLIAYAEAGHYHWQHEPAWYAVRGTGHWSGDRRQSTL-WSIPNRDQDATTVHG 301

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           TQKP   + R ++++   G  I +PF GS TS   A+   R  + IE+   Y+D+  +R
Sbjct: 302 TQKPVECMRRPMLNNASAGQAIYEPFSGSCTSIIAAESSGRLCLAIELDPAYVDVTVQR 360


>gi|294678262|ref|YP_003578877.1| adenine-specific DNA-methyltransferase [Rhodobacter capsulatus SB
           1003]
 gi|294477082|gb|ADE86470.1| site-specific DNA-methyltransferase (adenine-specific) [Rhodobacter
           capsulatus SB 1003]
          Length = 186

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 49/151 (32%), Gaps = 19/151 (12%)

Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
           +    +    ++   I+W K   +       +   HE        P              
Sbjct: 2   LEACWEKAGAFVHQQIIWVKDRGV--LTRSHYLWKHEPCFMGWRRPN----------RPP 49

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
              +  + S W +P  +  ER         HPT KP       +      G +  +PF G
Sbjct: 50  KVAEQTLPSTWEMPSFAKDERPD-------HPTPKPLDAFGIPMRQHVARGGLCYEPFSG 102

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           SG+     +   R    +E+   Y+D+A +R
Sbjct: 103 SGSQIMAGEANGRRVFAMEISPAYVDVAVER 133


>gi|333011538|gb|EGK30951.1| DNA methylase [Shigella flexneri K-227]
 gi|333011652|gb|EGK31061.1| DNA methylase [Shigella flexneri K-227]
          Length = 156

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 15/98 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + + GN I V+ ++P  ++D I  DPPY +       R   ++    TD W + +  E Y
Sbjct: 3   RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RQGRTIAGDKTDEWLQPACNEMY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
                       RVLK +  +     ++ + R  +  +
Sbjct: 60  ------------RVLKKDALMVSFYGWNRVDRFMSAWK 85


>gi|220915067|ref|YP_002490375.1| DNA methylase N-4/N-6 domain protein [Methylobacterium nodulans ORS
           2060]
 gi|219952818|gb|ACL63208.1| DNA methylase N-4/N-6 domain protein [Methylobacterium nodulans ORS
           2060]
          Length = 311

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/293 (15%), Positives = 80/293 (27%), Gaps = 55/293 (18%)

Query: 24  IKGNSISVLEKLPAKSVDL-IFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
              +++   +++P   VD  ++  PP++          D   V           S + + 
Sbjct: 17  YHVDTVEFTKEMPDDCVDFSVY-SPPFSSLYIYSESERDMGNVG----------SDDEFQ 65

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           A  R  +    R+ KP     +       +   +   +           R          
Sbjct: 66  AHYRYLVKELFRITKPGRLTAIHVKDLVYYSNASERGDRGIRDFTGACIRTHVQEGWSFH 125

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDA------------------------------LK 172
           RR       +     +   +    N+                                  
Sbjct: 126 RRITIDRCPVREMQKTKSDRLLYKNFRTDAARTGGGLPEYIVVFRKWADGMDAVPPVLHD 185

Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGE-------------KLHPTQKPEALLSRILVS 219
            A   ++   D   PI   S    + D               + H    P  L  R++  
Sbjct: 186 PAEHPLESWQDLAQPIWMTSGIWYDTDETDVLNVRVARDAEAEKHLCPMPLDLTERLVRQ 245

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
            T P + +  PF G G+ G  +    R FIG E+KQ Y   A + +   +  G
Sbjct: 246 YTNPDETVYSPFMGIGSEGYQSLLQGRRFIGTELKQSYYTQAVRYLTEAEQRG 298


>gi|319947991|ref|ZP_08022168.1| site-specific DNA-methyltransferase (adenine-specific) [Dietzia
           cinnamea P4]
 gi|319438337|gb|EFV93280.1| site-specific DNA-methyltransferase (adenine-specific) [Dietzia
           cinnamea P4]
          Length = 392

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 1/63 (1%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI-DIATKR 264
           T KPEAL+ RI+  +T+PG++++D F GSGT+   A+ L R ++ +E   D + D+   R
Sbjct: 328 TPKPEALMRRIVELATEPGELVVDLFAGSGTTAVAARALGRRWVVVERNPDTVHDVLVPR 387

Query: 265 IAS 267
           + +
Sbjct: 388 LRA 390



 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 15/123 (12%)

Query: 38  KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK 97
            +  L++ DPPYN                   DS+        +  +  + L+  R +L 
Sbjct: 64  GTAQLVYLDPPYN--------------RGGRFDSYHDNMPRLEWLDYIESRLVVARDLLA 109

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
             GT+WV        R+  +L ++         +  +SNP      R F  +H+ L+  +
Sbjct: 110 DTGTVWVHLDDAEAHRVRCLLDDVFGTDAFIADLTVESNPKGRQLDRFFAGSHDRLMVYA 169

Query: 157 PSP 159
             P
Sbjct: 170 RDP 172


>gi|288941263|ref|YP_003443503.1| DNA methylase N-4/N-6 domain-containing protein [Allochromatium
           vinosum DSM 180]
 gi|288896635|gb|ADC62471.1| DNA methylase N-4/N-6 domain protein [Allochromatium vinosum DSM
           180]
          Length = 1038

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 41/77 (53%)

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
                    E ++  Q  E ++ R L+ +T PGD++LDP  GSGT+  VA+K  R +I  
Sbjct: 498 HWESMQIGKELMYVVQTAERIIERCLLMTTDPGDLVLDPTCGSGTTATVAEKWGRRWITC 557

Query: 252 EMKQDYIDIATKRIASV 268
           +  +  I +A +R+ + 
Sbjct: 558 DTSRVAITLAKQRLMTA 574



 Score = 72.7 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 81/201 (40%), Gaps = 26/201 (12%)

Query: 19  WKDKIIKGNSISVLEKL-PAKS----VDLIFADPPYNLQLN-------GQLYRPDHS--- 63
           W +++I G+S+ V+  L   +S    V +I+ DPPY ++         G+    D +   
Sbjct: 216 WANRLIAGDSLLVMNSLIQKESLAGRVQMIYIDPPYGIKYGSNFQPFVGKRDVKDRNDAD 275

Query: 64  ------LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
                 ++ A  D+W+      +Y  + R  LL  R +L  +G+++V  S  N+  +  +
Sbjct: 276 LTQEPEMIKAFRDTWE--LGIHSYLTYLRDRLLLARELLHESGSVFVQISDENLHHVREI 333

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
           +  + F + N     +     +  G       + LIW +       Y   Y    A ++ 
Sbjct: 334 MDEV-FGVRNFCSVIQVQKTGSQEGSLLACTVDFLIWYAKDKSQVKYRQIYLERVAGDKS 392

Query: 178 VQMRSDWLIPICSGSERLRNK 198
                   I + SG ER  ++
Sbjct: 393 FTRYD--FIRLPSGIERRLSR 411


>gi|91215021|ref|ZP_01251993.1| type III restriction-modification system: methylase [Psychroflexus
           torquis ATCC 700755]
 gi|91186626|gb|EAS72997.1| type III restriction-modification system: methylase [Psychroflexus
           torquis ATCC 700755]
          Length = 652

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           +  +N+        +KPE LL RI+  +T  GDI+LD F GSGT+  V+ K+ R +IGIE
Sbjct: 452 QNTQNEGSVSFTNGKKPEELLYRIIKMATNEGDIVLDFFVGSGTTPCVSHKMNRKYIGIE 511

Query: 253 MKQDYI-DIATKRIASV 268
            + DYI D+   R+  V
Sbjct: 512 -QMDYIQDLPYNRLVKV 527



 Score = 40.7 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 46/147 (31%), Gaps = 16/147 (10%)

Query: 38  KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK 97
             + LI+ DPP+N + +   Y              D F +   +  F    L   + +L 
Sbjct: 196 GKIKLIYIDPPFNTENDSFRY-------------NDTF-NHSTWLTFILNRLEIAKELLT 241

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
            +G +++         +  +   +      +N I  + S P       + +   +   + 
Sbjct: 242 DDGLIFIHLDQIEEAYMKIVCDEVFERENYVNTITVKSSTPSGTKTAHKDKTIIKQKDFI 301

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRS 182
               K     FN    + +N D     
Sbjct: 302 LVYRKTNKARFNPQYKRKSNWDTHFNY 328


>gi|22001102|gb|AAM88306.1|AF479828_5 unknown [Escherichia coli]
          Length = 188

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 40/81 (49%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P          +     HP +KP  +L +I+ +S++PGD++ D F GSG++   A  L 
Sbjct: 107 VPYTDVWTHKPVQYYPGKHPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALG 166

Query: 246 RSFIGIEMKQDYIDIATKRIA 266
           R   G+E++ +  +   +   
Sbjct: 167 RLATGVELETERFEQTVREFR 187


>gi|295087509|emb|CBK69032.1| DNA modification methylase [Bacteroides xylanisolvens XB1A]
          Length = 322

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 1/86 (1%)

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
           + W  P  +GSERL  +  + +H  QKP   +  I+ SS++  D+I +PF G  +    A
Sbjct: 236 NVWREPPLNGSERL-KEGNKAIHFNQKPLKFMELIINSSSEEHDVIWEPFGGLFSGILAA 294

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIAS 267
            KL R   G E+ +D  D A +R+  
Sbjct: 295 NKLNRMAYGAEINKDVFDYAKQRLLE 320


>gi|167565740|ref|ZP_02358656.1| site-specific DNA methyltransferase [Burkholderia oklahomensis
           EO147]
          Length = 142

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 56/160 (35%), Gaps = 24/160 (15%)

Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
             +  ++Q     +    VW K+      R   F    E ++WAS      G  +     
Sbjct: 2   PTLTDVVQAAGLILRGVAVWDKTPGRTRPRRGGFAQQAEFIVWASRGAMRDGDVYLPGVF 61

Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
                         +P+             K H T+KP  + +R +V     G ++ D F
Sbjct: 62  PV-----------RLPLP------------KQHVTEKPLDV-AREVVRLVPAGGVVCDLF 97

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
            GSGT  A A++    +IG E    Y  IA  R+   +  
Sbjct: 98  AGSGTFLAAAREAGLHWIGCETNATYYAIAMHRLGVARDF 137


>gi|330818897|ref|YP_004351114.1| DNA methylase N-4/N-6 domain protein [Burkholderia gladioli BSR3]
 gi|327374439|gb|AEA65791.1| DNA methylase N-4/N-6 domain protein [Burkholderia gladioli BSR3]
          Length = 414

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 77/280 (27%), Gaps = 70/280 (25%)

Query: 42  LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
           L+   PPY L++      P                  E Y  F    L    + L P G 
Sbjct: 136 LVLTSPPYPLRMPRAYGNP----------------PVEEYIDFVCRILEPMLKHLVPGGN 179

Query: 102 LW------------VIGSYHNIFRIGTMLQNLNFWILNDIVW---RKSNPMPNFRGRRFQ 146
           +                S +       +++ L   +++ +VW   +   P+      R Q
Sbjct: 180 VVLNVSNDIFESKSPARSTYLEELTLALVKRLGLHLMDRLVWASNKPPGPVQWASKMRMQ 239

Query: 147 --NAHETLIWASPSPKAKG---------------------------------YTFNYDAL 171
               +E ++W   SP                                     Y     A 
Sbjct: 240 LNTGYEPVLWFCNSPNECIADNRRVLQPHTNSHQKLIAQGGIERARRNGDGAYRLRPGAY 299

Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKL----HPTQKPEALLSRILVSSTKPGDII 227
               E    R+          +R      + +    H    P  L   I+   T    ++
Sbjct: 300 GKPTEGRIPRNVLQFGNTCVDQRAHKLRVKNMGLPSHGAPMPLNLARFIVRWMTAVEQLV 359

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            DP FGS T+G   +   R + G E+   Y   A +R   
Sbjct: 360 ADPCFGSNTTGKACELEGRRWAGTEIVPQYARGAAERFTD 399


>gi|299143877|ref|ZP_07036957.1| type III restriction/modification enzyme, methylase subunit
           [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518362|gb|EFI42101.1| type III restriction/modification enzyme, methylase subunit
           [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 660

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 8/160 (5%)

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
            L N +       +   +  +      + +   E +           Y      +   ++
Sbjct: 378 ALNNADSVFRYTAIGNNAGQIVVNTRNKSREEVEKIFTVERDGHYTVYVHKGQEIAFYSK 437

Query: 177 DVQMRSDWLIPIC--------SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
            +      ++P          +  E + N+ G  L   +KPE L+ RI+  ++  GD+IL
Sbjct: 438 KLHEVDGKIVPSMQVSNIWTDTSYEGIANEGGVTLKGGKKPEKLIRRIIEMASDKGDLIL 497

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           D   GSGT+ AVA K+ R +IGIE  +   D +T R+ SV
Sbjct: 498 DYHLGSGTTCAVAHKIGRKYIGIEQLKYGKDDSTVRLESV 537



 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 69/190 (36%), Gaps = 17/190 (8%)

Query: 13  QNSIFEWK-DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
           +N  F+ K + IIKGN++  L  L       V  I+ DPPY   +N           D  
Sbjct: 165 ENITFDEKDNLIIKGNNLIALSSLLKRYEGKVKCIYIDPPYYFSVNK----------DED 214

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--IL 126
           T +++      ++  F +  L   +R+L  +G L+V  S   +  +  +L+++      +
Sbjct: 215 TFAYNSNFKLSSWLVFMKNRLEMAKRLLSDDGALFVQISDDGVGELHCLLKDIFGIENFI 274

Query: 127 NDIVWRKSNPMPN-FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
           N I  +  +P              E ++  + + +   Y   Y           +  +  
Sbjct: 275 NKITVKTKSPSGFASVNPGVFETAEYILAFAKNKRNWKYNIQYVESGYDVNYKSVVVNKN 334

Query: 186 IPICSGSERL 195
            P      R 
Sbjct: 335 DPAEKWIIRN 344


>gi|223039764|ref|ZP_03610049.1| DNA methylase [Campylobacter rectus RM3267]
 gi|222878956|gb|EEF14052.1| DNA methylase [Campylobacter rectus RM3267]
          Length = 311

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/290 (16%), Positives = 92/290 (31%), Gaps = 56/290 (19%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I  G+S  V++ L  +SV  I   PP+       LY   +S  D       +F    A+ 
Sbjct: 14  IYNGDSCEVVKALNDESVGYIIYSPPF-----DSLYTYSNSDRDMGNSEKGEFMEHFAFL 68

Query: 83  AFTRAWLLACRRVLKPNGT----------LWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           A     +L   R++  +               I  +     +  + +++ F   +++   
Sbjct: 69  AKELFRILKSGRLMSFHCMNLPTSKVRDGFIGIRDFRG--ELIRLFESVGFIFHSEVCIW 126

Query: 133 KSNPMPNFRG----------------------------RRFQNAHETLIWASPSPKAKGY 164
           K   +   R                             R+     E +          G 
Sbjct: 127 KDPVIAQQRTKALGLLHKQLVKDSAMSRQGIPDYLVTMRKPGINAEPIEGGLKYYCGDGA 186

Query: 165 -----------TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL 213
                        N  +++            + P  + S +    D ++ H       ++
Sbjct: 187 PIASKFDEEKGNLNRGSIEVWQRYASPVWMDINPSNTLSLKGSRDDEDEKHICPLQLDVI 246

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
            R L   +  GD++  PF G G+    + K+ R  IGIE+K  Y ++A K
Sbjct: 247 ERALQLWSNEGDVVFTPFLGIGSEVYQSLKMNRKGIGIELKNSYFNVAAK 296


>gi|169830638|ref|YP_001716620.1| putative RNA methylase [Candidatus Desulforudis audaxviator MP104C]
 gi|169637482|gb|ACA58988.1| putative RNA methylase [Candidatus Desulforudis audaxviator MP104C]
          Length = 258

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 2/93 (2%)

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGSG 235
           D +    + I I     + R + G   HP   P  L  R++    + G  ++LDPF GSG
Sbjct: 2   DGKTWLRYSISIWDDVLKDREERGYN-HPAMFPSRLTDRLVEIFGRKGGGLVLDPFMGSG 60

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           ++   A +   + +G E+   YIDIA +R+A++
Sbjct: 61  STLYSAYRHGLASVGFELSAGYIDIARQRLAAL 93



 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 50/152 (32%), Gaps = 16/152 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD--KFSSFE 79
           +II+ +S  +L  +   SV L    PPY   LN +      ++ +  +D  D  +   + 
Sbjct: 104 RIIQDDSRRLLNYVAPASVGLCVTSPPYWDILNQRRTADGKTIRNYGSDPDDLGRIKDYG 163

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVI--------GSYHNIFRIGTMLQNLNFWILNDIVW 131
            +    +      R  +       V+          +     +   L++    + + I+W
Sbjct: 164 EFLDALQVVFAGVRETMVTGAYCVVVVMDIRKKDDFFPLHMDLTARLRDTGLTLDDIIIW 223

Query: 132 RKS------NPMPNFRGRRFQNAHETLIWASP 157
            +        P+      R    HE ++    
Sbjct: 224 DRRAEYNNLRPLGYPHVFRVNKVHEFILIFQK 255


>gi|256028672|ref|ZP_05442506.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
           D11]
          Length = 251

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 36/74 (48%)

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           +   K G   HP + P  L S  +   T  GD++LDPF GS T+G  A+K  R +I IE 
Sbjct: 159 KTCKKRGLVPHPARMPLELASFFINFLTDEGDLVLDPFGGSNTTGFCAEKQNRKWISIEA 218

Query: 254 KQDYIDIATKRIAS 267
             +Y   +  R   
Sbjct: 219 NIEYGKQSIIRFEE 232


>gi|52425081|ref|YP_088218.1| hypothetical protein MS1026 [Mannheimia succiniciproducens MBEL55E]
 gi|52307133|gb|AAU37633.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 649

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 60/139 (43%), Gaps = 23/139 (16%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY 58
                 +  EN +S    ++ +I+G+++ VL+ L      SV +I+ DPPYN   +G +Y
Sbjct: 80  EDVEHNSKEENAHS----QNVLIQGDNLEVLKHLKNAYRNSVKMIYIDPPYNTGSDGFVY 135

Query: 59  RPDHS--------LVDAVTDSWDKFSSF--------EAYDAFTRAWLLACRRVLKPNGTL 102
           + D          L +   D  ++  +F         A+  F    L   R +LK +G +
Sbjct: 136 QDDRKFTPEQLATLANITPDEAERILNFTDKGSNSHSAWLTFMYPRLYVARELLKEDGVI 195

Query: 103 WVIGSYHNIFRIGTMLQNL 121
           ++    + + ++  +   +
Sbjct: 196 FISIDDNEVAQLKLLCDEV 214



 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 20/105 (19%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEM 253
           G+++    KP  LL   +       D+ILD F GSG++     +L       R FI +++
Sbjct: 403 GKRIFNNPKPIELLKDFISIGMGKNDLILDFFAGSGSTAHAVMQLNAEDGGNRQFILVQL 462

Query: 254 -------KQDY-------IDIATKRIASVQPLGNIELTVLTGKRT 284
                   + Y        DI   RI         +    +G ++
Sbjct: 463 PEQTDTKSEAYKAGYKTIFDITKARIEKSAVKIREDFPDASGAKS 507


>gi|161504452|ref|YP_001571564.1| hypothetical protein SARI_02565 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865799|gb|ABX22422.1| hypothetical protein SARI_02565 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 652

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 58/136 (42%), Gaps = 23/136 (16%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
           + N+LA+N+N +++F      + G+++ VL  L      +VD+I+ DPPYN   +G +Y 
Sbjct: 95  EHNTLAVNKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVYP 148

Query: 60  PDHSLVDAVTDSWDKFSSFE--------------AYDAFTRAWLLACRRVLKPNGTLWVI 105
                 D         +  E              A+ +F    L   R++LK  G +++ 
Sbjct: 149 DHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFIS 208

Query: 106 GSYHNIFRIGTMLQNL 121
              +    +  M+  +
Sbjct: 209 IDDNEHANLKLMMDEI 224



 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
             A  +  +      D +     G + + +  G+ +  T KP ALL +I+  +     I+
Sbjct: 355 MYAHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPTALLKKIIKLAIDKNGIV 414

Query: 228 LDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
           LD F GSGT+      L       R+FI   + Q
Sbjct: 415 LDFFAGSGTTAHAVMALNEEDGGQRAFILCTLDQ 448


>gi|118575846|ref|YP_875589.1| adenine specific DNA methylase [Cenarchaeum symbiosum A]
 gi|118194367|gb|ABK77285.1| adenine specific DNA methylase [Cenarchaeum symbiosum A]
          Length = 786

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 86/226 (38%), Gaps = 29/226 (12%)

Query: 19  WKDKIIKGNSISVLEKL-----PAKSVDLIFADPPYNLQLN-------GQLYRPDHSLVD 66
           W +++I G+S+ V+  L      A +V +I+ DPPY ++          +    D S  D
Sbjct: 71  WSNRLIGGDSLLVMNSLLRKERMADTVQMIYIDPPYGIKYGSNFQPFVSKKEVKDGSDKD 130

Query: 67  ---------AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
                    A  D+WD      +Y ++ R  L+  R +LK +G++ V  S  N+  +  +
Sbjct: 131 LAYTPETIHAFKDTWD--LEIHSYISYLRDRLVLSRELLKVSGSIGVQISDENMHYVRML 188

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
           +  +        + +      +          + +IW + +     Y   Y+       D
Sbjct: 189 MDEVFGKKNFVGIIQYRTTATSITKSSIPIVCDYIIWYAKNKSELKYNPIYEKRSFPIND 248

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL-LSRILVSSTK 222
              R   +       ER R    E+ +P   PE   + RI+   ++
Sbjct: 249 PNYRFVEI-----NGERRRMSPEERRNPNLLPEGSKIYRIVALVSQ 289



 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 7/105 (6%)

Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK 222
           G T N  +        Q+ + WL     G E        K +  Q     + R ++ +T 
Sbjct: 333 GNTINRVSYFHETNYEQLNNMWLDTTSGGFEG-------KTYVVQTTAKTIRRFMLMTTD 385

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           PGD++ DP  GSGT+  V+++  R +I ++ ++  I +A +RI +
Sbjct: 386 PGDLVFDPTCGSGTTAYVSEEYGRRWITVDTQRVAITLAKRRIMA 430


>gi|302343032|ref|YP_003807561.1| DNA methylase N-4/N-6 domain protein [Desulfarculus baarsii DSM
           2075]
 gi|301639645|gb|ADK84967.1| DNA methylase N-4/N-6 domain protein [Desulfarculus baarsii DSM
           2075]
          Length = 938

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 40/68 (58%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K++  Q    ++ R ++ +T PGD++LDP  GSGT+  VA++  R +I I+  +  + +A
Sbjct: 432 KVYVVQTNIKVIQRCILMATDPGDLVLDPTCGSGTTAYVAEQWGRRWITIDTSRVALALA 491

Query: 262 TKRIASVQ 269
             RI   +
Sbjct: 492 RARIMGAR 499



 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 65/186 (34%), Gaps = 24/186 (12%)

Query: 18  EWKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSL-------- 64
           +W +++I G+S+ V+  L         V  I+ DPPY ++ N        S         
Sbjct: 130 KWSNRLILGDSLQVMASLAEREGLRGQVQCIYLDPPYGIKFNSNFQWSTTSRTVTDGKAE 189

Query: 65  --------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
                   V A  D+W       +Y  + R  L A R +L  +G+++V     N+ R+  
Sbjct: 190 HITREPEQVKAFRDTW--RDGIHSYLTYLRDRLTAARDLLAESGSIFVQIGDQNVHRVRA 247

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
           ++  +     N I     +           N    + W + S +   +   +      +E
Sbjct: 248 LMDEVFGD-ENFIGEIAYHTTSGSTSEYISNPKNYVHWYAKSRREMTFRRCFVPRIFNHE 306

Query: 177 DVQMRS 182
           +     
Sbjct: 307 EPGPWQ 312


>gi|296314113|ref|ZP_06864054.1| type III restriction-modification system EcoP15I, modification
           subunit [Neisseria polysaccharea ATCC 43768]
 gi|296839263|gb|EFH23201.1| type III restriction-modification system EcoP15I, modification
           subunit [Neisseria polysaccharea ATCC 43768]
          Length = 566

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 71/189 (37%), Gaps = 27/189 (14%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY 58
             K   A  EN  S    ++ +I+G+++ VL+ L      SV +I+ DPPYN   +G +Y
Sbjct: 23  EDKTHNAKPENAGS----QNLLIRGDNLEVLKHLKNAYTNSVKMIYIDPPYNTGSDGFVY 78

Query: 59  RPDHSLVDA---------------VTDSWDKFS-SFEAYDAFTRAWLLACRRVLKPNGTL 102
           + D     A               + D  DK S S  A+  F    L   R +LK +G +
Sbjct: 79  QDDRKFTPAELARLANIDEDEAARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVI 138

Query: 103 WVIGSYHNIFRIGTMLQNL----NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
           ++    +   ++  +   +    NF+                   + Q + E ++     
Sbjct: 139 FISIDDNEAAQLKLLCDEVFGEGNFYGTATWTATTKAMNAGTAKYKLQKSDEYILIYGMV 198

Query: 159 PKAKGYTFN 167
              +   FN
Sbjct: 199 SMQEHPPFN 207



 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 43/125 (34%), Gaps = 32/125 (25%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIG-- 250
             E    T KP  L+ +++   T   D++LD F GSGT+      L       R FI   
Sbjct: 323 QKEHGFETIKPLDLIEKLIFHCTGKNDLVLDFFAGSGTTAHALMNLNLIDDGNRKFITVQ 382

Query: 251 -------------------IEMKQDYIDIATKRIASVQP-----LGNIELTVLTGKRTEP 286
                               E+ +D I++A  +I +  P     LG          R  P
Sbjct: 383 LPELTKPDSDAFLAGYNNIFEITKDRIELAAAKIRAEHPDYTGDLGFKIFQTADNFRQHP 442

Query: 287 RVAFN 291
              F+
Sbjct: 443 DNDFS 447


>gi|260576699|ref|ZP_05844685.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sp. SW2]
 gi|259021066|gb|EEW24376.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sp. SW2]
          Length = 974

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 62/146 (42%), Gaps = 7/146 (4%)

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
           W   D+  ++  P    R +  Q+    L ++       G T  Y           + + 
Sbjct: 359 WFPVDLAGKQYRPSEKSRWKSNQSGFVRLGFSGRFQPI-GNTLMYRRFLDDFAVAPINNL 417

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           W   + +G         EK +  Q    ++ R ++ +T PGD++LDP  GSGT+  VA++
Sbjct: 418 WRDTVMTGF------SEEKTYVVQSSSKIVERCMLMTTDPGDLVLDPTCGSGTTAYVAEQ 471

Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQ 269
             R +I I+  +  + +A  R+   +
Sbjct: 472 WGRRWITIDTSRVAVALARSRLMGAR 497



 Score = 65.8 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 23/126 (18%)

Query: 17  FEWKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSL------- 64
             W +++I G+S+SV+  L         V  I+ DPPY ++ N        S        
Sbjct: 128 QHWSNRMISGDSLSVMASLAEREGLRGQVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGDK 187

Query: 65  ---------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
                    V A  D+W       +Y  + R  L   R +L  +G+++V     N+ R+ 
Sbjct: 188 THVTREPEQVRAFRDTWKD--GIHSYLTYLRDRLTVARDLLSDSGSIFVQIGDENVHRVR 245

Query: 116 TMLQNL 121
            ++  +
Sbjct: 246 ALMDEV 251


>gi|188535906|ref|YP_001909392.1| DNA recognition and methylase subunit Mod [Erwinia tasmaniensis
           Et1/99]
 gi|188027010|emb|CAO94796.1| DNA recognition and methylase subunit Mod (type III restriction and
           modification system), similar to LlaFI [Erwinia
           tasmaniensis Et1/99]
          Length = 663

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 2/96 (2%)

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
            N       +    + S     R++ G +L   +KPE LL  I+   +   D+ILD   G
Sbjct: 436 KNAQNTTPIENFYDLASYFGNCRHEGGVELRSGKKPEFLLKTIINHFSNQNDLILDFHLG 495

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYI-DIATKRIASV 268
           S T+ AVA K+ R +IGIE + DYI DI   R+ +V
Sbjct: 496 SATTCAVAHKMGRRYIGIE-QMDYIKDICIPRMVNV 530



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 17/102 (16%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L     + V LI+ DPPYN   +G  Y              DKF +
Sbjct: 174 NLIIKGNNLIALNLLKLTHKEKVKLIYIDPPYNTGSDGFKY-------------NDKF-N 219

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
              +  F +  L + + +L  +  +           +  ++ 
Sbjct: 220 HSTWLTFIKNRLESAKELLSDDAFICCHIDDSESHYLKVLMD 261


>gi|169830412|ref|YP_001716394.1| DNA methylase N-4/N-6 domain-containing protein [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169637256|gb|ACA58762.1| DNA methylase N-4/N-6 domain protein [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 896

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 182 SDWL-IPICSGSERLRNKDG-EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
           +DW   P+ +         G  K++  Q  + ++ R ++ +T PGD++LDP  GSGT+  
Sbjct: 401 NDWSSFPLTNTWTDTGTGSGLNKIYVVQTDDKIVQRCILMATDPGDLVLDPTCGSGTTAY 460

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           VA++  R +I I+  +  + +A  RI   +
Sbjct: 461 VAEQWGRRWITIDTSRVALALARARIMGAR 490



 Score = 72.7 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 83/228 (36%), Gaps = 31/228 (13%)

Query: 5   NSLAINENQNSIFEWKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYR 59
           N  A  E       W +++I G+S+ V+  L         V  I+ DPPY ++ N     
Sbjct: 116 NESARTEFYQHDANWSNRMILGDSLQVMASLAEREGLRGKVQCIYIDPPYGIKFNSNFQW 175

Query: 60  PDHSL----------------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW 103
              S                 V A  D+W       +Y  + R  L   R +L  +G+++
Sbjct: 176 STTSRDVKDGNVEHITREPEQVKAFRDTW--RDGIHSYLTYLRDRLTVARDLLADSGSIF 233

Query: 104 VIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
           V     N+ R+  ++  +      +++I+  KS+ + +    R     + +++   SP +
Sbjct: 234 VQIGDENVHRVRALMDEVFGEDCFISEIIVVKSSGLGSTTLPRQN---DYILFYGKSPDS 290

Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
             Y   +       E         +    G  R   KD EK +P   P
Sbjct: 291 IKYRQLFKDKALDGEGAGAYQ--YVKGLDGIIRRM-KDEEKKNPHLIP 335


>gi|298290021|ref|YP_003691960.1| DNA methylase N-4/N-6 domain protein [Starkeya novella DSM 506]
 gi|296926532|gb|ADH87341.1| DNA methylase N-4/N-6 domain protein [Starkeya novella DSM 506]
          Length = 499

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 33/63 (52%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HPT KP  L+  ++   T  G  +LDPF G+GT+G  A +   + + IE    Y     +
Sbjct: 396 HPTVKPVDLMQWLVRLVTAKGGTVLDPFAGTGTTGEAAWREGCNAVLIERNPPYQADIRR 455

Query: 264 RIA 266
           R+A
Sbjct: 456 RMA 458



 Score = 72.7 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 16/128 (12%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV------- 65
             +  + +  +  G+S   L+ +   SVD    DPPY L   G+ +  + +         
Sbjct: 3   PETFLDGRVTLYCGDSRDALDLIEPNSVDNCVCDPPYALVSIGKRFGKEGAAPAKGGVYQ 62

Query: 66  ----DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
                 +  SWD         AF   +     R LKP G +   G      R+   +++ 
Sbjct: 63  RASGGFMGQSWDTGE-----VAFDAKFWRKVFRALKPGGHVIAFGGTRAYHRLAVAIEDA 117

Query: 122 NFWILNDI 129
            F I + I
Sbjct: 118 GFEIRDSI 125


>gi|59800979|ref|YP_207691.1| putative type III restriction-modification system methyltransferase
           [Neisseria gonorrhoeae FA 1090]
 gi|240080430|ref|ZP_04724973.1| putative type III restriction-modification system methyltransferase
           [Neisseria gonorrhoeae FA19]
 gi|240118256|ref|ZP_04732318.1| putative type III restriction-modification system methyltransferase
           [Neisseria gonorrhoeae PID1]
 gi|240125994|ref|ZP_04738880.1| putative type III restriction-modification system methyltransferase
           [Neisseria gonorrhoeae SK-92-679]
 gi|59717874|gb|AAW89279.1| putative type III restriction-modification system methyltransferase
           [Neisseria gonorrhoeae FA 1090]
          Length = 687

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 75/215 (34%), Gaps = 32/215 (14%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY 58
             K   A  EN  S    ++ +I+G+++ VL+ L      SV +I+ DPPYN   +G +Y
Sbjct: 112 EDKTHNAKPENAGS----QNLLIRGDNLEVLKHLKNAYANSVKMIYIDPPYNTGSDGFVY 167

Query: 59  RPDHSLVDA---------------VTDSWDKFS-SFEAYDAFTRAWLLACRRVLKPNGTL 102
           + D     A               + D  DK S S  A+  F    L   R +LK +G +
Sbjct: 168 QDDRKFTPAELALLANIDEDEAARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVI 227

Query: 103 WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
           ++    +   ++  +            V+ + N +     R+     +     S   +  
Sbjct: 228 FISIDDNEAAQLKLLCDE---------VFGEGNFVAQLPWRKRTAKSDVPFGISQDYEWI 278

Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                     AA +  + R            R  +
Sbjct: 279 FVFAKSCQFIAATKGKERRYYETDDFPDRPWRTHD 313



 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 7/106 (6%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------ 244
           G++ + +  G K+    KP  L+  ++  S+K  D+ILD F GSGT+     +L      
Sbjct: 435 GTKEITDLFGSKIFTFPKPSQLIKFLVSISSKSNDLILDFFAGSGTTAHAVMQLNAEGQN 494

Query: 245 -RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
             R +I +++ +   + +  R A    + +I    +     + RV 
Sbjct: 495 GNRRYICVQLPEKTAEKSEARKAGYPTIFDITKARIEKAAAKIRVE 540


>gi|268596572|ref|ZP_06130739.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268603965|ref|ZP_06138132.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268684586|ref|ZP_06151448.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268550360|gb|EEZ45379.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268588096|gb|EEZ52772.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268624870|gb|EEZ57270.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
          Length = 686

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 75/215 (34%), Gaps = 32/215 (14%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY 58
             K   A  EN  S    ++ +I+G+++ VL+ L      SV +I+ DPPYN   +G +Y
Sbjct: 111 EDKTHNAKPENAGS----QNLLIRGDNLEVLKHLKNAYANSVKMIYIDPPYNTGSDGFVY 166

Query: 59  RPDHSLVDA---------------VTDSWDKFS-SFEAYDAFTRAWLLACRRVLKPNGTL 102
           + D     A               + D  DK S S  A+  F    L   R +LK +G +
Sbjct: 167 QDDRKFTPAELALLANIDEDEAARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVI 226

Query: 103 WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
           ++    +   ++  +            V+ + N +     R+     +     S   +  
Sbjct: 227 FISIDDNEAAQLKLLCDE---------VFGEGNFVAQLPWRKRTAKSDVPFGISQDYEWI 277

Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                     AA +  + R            R  +
Sbjct: 278 FVFAKSCQFIAATKGKERRYYETDDFPDRPWRTHD 312



 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 7/106 (6%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------ 244
           G++ + +  G K+    KP  L+  ++  S+K  D+ILD F GSGT+     +L      
Sbjct: 434 GTKEITDLFGSKIFTFPKPSQLIKFLVSISSKSNDLILDFFAGSGTTAHAVMQLNAEGQN 493

Query: 245 -RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
             R +I +++ +   + +  R A    + +I    +     + RV 
Sbjct: 494 GNRRYICVQLPEKTAEKSEARKAGYPTIFDITKARIEKAAAKIRVE 539


>gi|293398839|ref|ZP_06643004.1| type III restriction enzyme [Neisseria gonorrhoeae F62]
 gi|291610253|gb|EFF39363.1| type III restriction enzyme [Neisseria gonorrhoeae F62]
          Length = 682

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 75/215 (34%), Gaps = 32/215 (14%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY 58
             K   A  EN  S    ++ +I+G+++ VL+ L      SV +I+ DPPYN   +G +Y
Sbjct: 107 EDKTHNAKPENAGS----QNLLIRGDNLEVLKHLKNAYANSVKMIYIDPPYNTGSDGFVY 162

Query: 59  RPDHSLVDA---------------VTDSWDKFS-SFEAYDAFTRAWLLACRRVLKPNGTL 102
           + D     A               + D  DK S S  A+  F    L   R +LK +G +
Sbjct: 163 QDDRKFTPAELALLANIDEDEAARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVI 222

Query: 103 WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
           ++    +   ++  +            V+ + N +     R+     +     S   +  
Sbjct: 223 FISIDDNEAAQLKLLCDE---------VFGEGNFVAQLPWRKRTAKSDVPFGISQDYEWI 273

Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                     AA +  + R            R  +
Sbjct: 274 FVFAKSCQFIAATKGKERRYYETDDFPDRPWRTHD 308



 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 7/106 (6%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------ 244
           G++ + +  G K+    KP  L+  ++  S+K  D+ILD F GSGT+     +L      
Sbjct: 430 GTKEITDLFGSKIFTFPKPSQLIKFLVSISSKSNDLILDFFAGSGTTAHAVMQLNAEGQN 489

Query: 245 -RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
             R +I +++ +   + +  R A    + +I    +     + RV 
Sbjct: 490 GNRRYICVQLPEKTAEKSEARKAGYPTIFDITKARIEKAAAKIRVE 535


>gi|120537207|ref|YP_957264.1| DNA methylase N-4/N-6 domain-containing protein [Marinobacter
           aquaeolei VT8]
 gi|120327042|gb|ABM21349.1| DNA methylase N-4/N-6 domain protein [Marinobacter aquaeolei VT8]
          Length = 635

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 69/175 (39%), Gaps = 14/175 (8%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + II+G++   L  L +     + +I+ DPPYN          D    D      D++  
Sbjct: 72  NLIIEGDNFDSLRLLRSTHRGRIRVIYIDPPYNTG------SKDWVYNDHYLKKDDRWKH 125

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL-NDIVWRKSNP 136
            + +  F    L   R +L P+G + V  +  N  R+  ++  +   +    +VWR    
Sbjct: 126 SK-WLEFMYQRLSIARDLLTPDGVIMVSINDENRSRLELLMDEVMPGMRLGSMVWRTRQG 184

Query: 137 MPNFRGRRFQNAHETL-IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
               +G    + HE + I+ +P  + +GY         +N D   R DW     +
Sbjct: 185 SNADQGCFMSSDHEHILIYGNPGFQFRGY--EKSFEMYSNPDNDPRGDWRTDNIT 237



 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 60/141 (42%), Gaps = 32/141 (22%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------ 244
           G+  + N  G ++    KP  L+ ++L  +T+PGDI+LD F GSGT+     +L      
Sbjct: 396 GATGVANIFGSRVFNYAKPATLIRQLLDQATRPGDIVLDFFAGSGTTAQAVLELNAKDGG 455

Query: 245 RRSFIGI--------EMKQDYI-DIATKRIASV------QPLGNIELTVLTGKR------ 283
            R FI          E  ++   D+  +R+  V       P    + T LT  +      
Sbjct: 456 NRRFIMCSSTEATAKEPDKNLCRDVCAERVRRVMAGYGDTPGLGDDFTYLTLDKVEEADL 515

Query: 284 ---TEPRVAFNLLV--ERGLI 299
               EPR AF LL   E G +
Sbjct: 516 MFEAEPRHAFGLLSLRETGYL 536


>gi|33594038|ref|NP_881682.1| putative modification methylase [Bordetella pertussis Tohama I]
 gi|33564112|emb|CAE43384.1| putative modification methylase [Bordetella pertussis Tohama I]
 gi|332383455|gb|AEE68302.1| putative modification methylase [Bordetella pertussis CS]
          Length = 983

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 46/85 (54%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           L  I + +       GEK++  Q   +++ R  + +T PGD++LDP  GSGT+  VA++ 
Sbjct: 449 LTDIWADTLGQNQFGGEKIYVVQTSISVVQRCFLMTTDPGDLVLDPTCGSGTTAYVAEQW 508

Query: 245 RRSFIGIEMKQDYIDIATKRIASVQ 269
            R +I I+  +  + +A  RI   +
Sbjct: 509 GRRWITIDTSRVALALARARIMGAR 533



 Score = 73.1 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 26/168 (15%)

Query: 19  WKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLN-----------------GQ 56
           W++++I G+S+ V+  L         V  I+ DPPY ++ N                 G 
Sbjct: 161 WQNRMILGDSLQVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGNAGH 220

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
           + R +   V A  D+W       +Y  + R  L+  R +L  +G+++V     N+ R+  
Sbjct: 221 ITR-EPEQVKAFRDTW--RDGIHSYLTYLRDRLMVARDLLTESGSIFVQIGDENVHRVRA 277

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
           +L  +     N +         +  G       +TL+W + + KA  Y
Sbjct: 278 LLDEVFGDD-NCVSTIVFAKTSSSTGDFIGPTFDTLLWYARNKKAVKY 324


>gi|317164509|gb|ADV08050.1| putative type III restriction-modification system methyltransferase
           [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 677

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 75/215 (34%), Gaps = 32/215 (14%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY 58
             K   A  EN  S    ++ +I+G+++ VL+ L      SV +I+ DPPYN   +G +Y
Sbjct: 102 EDKTHNAKPENAGS----QNLLIRGDNLEVLKHLKNAYANSVKMIYIDPPYNTGSDGFVY 157

Query: 59  RPDHSLVDA---------------VTDSWDKFS-SFEAYDAFTRAWLLACRRVLKPNGTL 102
           + D     A               + D  DK S S  A+  F    L   R +LK +G +
Sbjct: 158 QDDRKFTPAELALLANIDEDEAARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVI 217

Query: 103 WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
           ++    +   ++  +            V+ + N +     R+     +     S   +  
Sbjct: 218 FISIDDNEAAQLKLLCDE---------VFGEGNFVAQLPWRKRTAKSDVPFGISQDYEWI 268

Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                     AA +  + R            R  +
Sbjct: 269 FVFAKSCQFIAATKGKERRYYETDDFPDRPWRTHD 303



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 7/106 (6%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------ 244
           G++ + +  G K+    KP  L+  ++  S+K  D+ILD F GSGT+     +L      
Sbjct: 425 GTKEITDLFGSKIFTFPKPSQLIKFLVSISSKSNDLILDFFAGSGTTAHAVMQLNAEGQN 484

Query: 245 -RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
             R +I +++ +   + +  R A    + +I    +     + RV 
Sbjct: 485 GNRRYICVQLPEKTAEKSEARKAGYPTIFDITKARIEKAAAKIRVE 530


>gi|119717929|ref|YP_924894.1| site-specific DNA-methyltransferase (adenine-specific)
           [Nocardioides sp. JS614]
 gi|119538590|gb|ABL83207.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nocardioides sp. JS614]
          Length = 392

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 85/227 (37%), Gaps = 23/227 (10%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           +  ++G+++ VL ++P    + VDL++ DPPYN   +   +              D F  
Sbjct: 6   NVFVEGDNLDVLPRVPELVGRPVDLVYIDPPYNTGNDFAYH--------------DDFRC 51

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNP 136
             A+    R  L A R VL   G ++V    H +  +  ++  +     L   V    NP
Sbjct: 52  HAAWVEMMRPRLTAAREVLAETGAIFVSIDDHEVAHLRLLMDEVYGEQNLLAQVVVNLNP 111

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD----WLIPICSGS 192
                GR F  +HE L+  +   +              ++     +D      +P+ + +
Sbjct: 112 KGRQLGRGFATSHEYLLVYARDARRTVLDAATHETVDPSDFPLESADGRRYRQLPLRNTN 171

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
           ++        LH T   +    R + +    G + + P FG GT   
Sbjct: 172 KKFNPVTARTLHFTVWGDPQTGR-VATVPFEGAVEIGPVFGDGTPAV 217



 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 9/84 (10%)

Query: 203 LHPTQKPEALLSRILVSSTKPGD-IILDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
           +  + KP  LL RIL   T PGD ++LD F GSGT+G             R  + I   +
Sbjct: 295 VFESPKPTGLLRRIL--GTMPGDAVVLDFFAGSGTTGHAVALQNAADGGTRRCVSINSAE 352

Query: 256 DYIDIATKRIASVQPLGNIELTVL 279
              + +  R A ++ + +I    L
Sbjct: 353 PTREGSNARNAGLRTVADITRARL 376


>gi|83591581|ref|YP_425333.1| DNA methylase N-4/N-6 [Rhodospirillum rubrum ATCC 11170]
 gi|83574495|gb|ABC21046.1| DNA methylase N-4/N-6 [Rhodospirillum rubrum ATCC 11170]
          Length = 939

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 62/161 (38%), Gaps = 24/161 (14%)

Query: 18  EWKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNG-----------QLYRPD 61
            W +++I G+S+SV+  L         V  I+ DPPY ++ N            +    D
Sbjct: 127 NWTNRMILGDSLSVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGNKD 186

Query: 62  H-----SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
           H       V A  D+W        Y ++ R  L   R +L  +G+++V     N+ R+  
Sbjct: 187 HITREPEQVRAFRDTW--RDGIHTYLSYLRDRLTVARDLLTDSGSIFVQIGDENVHRVRM 244

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
           ++  +     N I    +       G    N  + ++W S 
Sbjct: 245 LMDEVFGD-ENFISQISTKTSGGSTGEYISNVVDFILWYSK 284



 Score = 73.5 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 41/68 (60%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K++  Q P  ++ R ++ ++ PGD++LDP  GSG++  VA++  R +I I+  +  + +A
Sbjct: 432 KVYVVQTPTTVIQRCILMASDPGDLVLDPTCGSGSTAFVAEQWGRRWITIDTSRVSLALA 491

Query: 262 TKRIASVQ 269
             RI   +
Sbjct: 492 RARIMGAR 499


>gi|74318294|ref|YP_316034.1| adenine specific DNA methylase [Thiobacillus denitrificans ATCC
           25259]
 gi|74057789|gb|AAZ98229.1| adenine specific DNA methylase [Thiobacillus denitrificans ATCC
           25259]
          Length = 559

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 71/206 (34%), Gaps = 21/206 (10%)

Query: 21  DKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLNGQLY-------RPDHSLVDAVTD 70
           ++II G+++  L+ L  +    V  I+ DPPYN    G +Y       +    L   V  
Sbjct: 66  NRIIHGDNLEALKSLLPEFEGRVKCIYIDPPYNTGNEGWVYNDAVNDPKIKRWLGQVVGK 125

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDI 129
             +  S  + +       L    R+L  +G++WV    +    +  +L  +         
Sbjct: 126 EGEDLSRHDKWLCMMYPRLKLLHRLLHDDGSIWVSIDDNASGLLRPLLDEIFGGANFVAT 185

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSP---KAKGYTFNYDALKAANEDVQMRSDWL- 185
           V  +    P    R+F   H+ ++  S  P    A+            N+D   R  W+ 
Sbjct: 186 VIWEKADSPRNSARQFSTDHDYILVYSKKPGWTPARLPRNEESDAIYQNQDDDERGPWIP 245

Query: 186 ------IPICSGSERLRNKDGEKLHP 205
                  P   G   +    G +  P
Sbjct: 246 GDPFANKPYSKGLYTITGPTGREFSP 271



 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETL--------IWASPSPKAKGYTFNYDALKA 173
               L  I            GR ++ + E L        IW  P+ +A+     Y    A
Sbjct: 254 YSKGLYTITGPTGREFSPPAGRYWRVSEEKLRELDDDGRIWWGPTGEARPSIKRYLNEVA 313

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKD-----GEKLHPTQKPEALLSRILVSSTKPGDIIL 228
              D+  R+ W       +   +N+      G     T KP AL+ R++  +    DI+L
Sbjct: 314 ---DLVPRTLWTKEAVGSNRSSKNEQRAIFAGTASFDTPKPSALIERVIQIAASSSDIVL 370

Query: 229 DPFFGSGTSGAVAKKLR------RSFIGIEMKQDYIDIATKRIASV 268
           D F GSGT+G    KL       R F+ IE +     +  +RI  V
Sbjct: 371 DSFAGSGTTGHAVMKLNAQDSGARRFVMIETESYADTLTAERIRRV 416


>gi|240121438|ref|ZP_04734400.1| putative type III restriction-modification system methyltransferase
           [Neisseria gonorrhoeae PID24-1]
          Length = 671

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 75/215 (34%), Gaps = 32/215 (14%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY 58
             K   A  EN  S    ++ +I+G+++ VL+ L      SV +I+ DPPYN   +G +Y
Sbjct: 96  EDKTHNAKPENAGS----QNLLIRGDNLEVLKHLKNAYANSVKMIYIDPPYNTGSDGFVY 151

Query: 59  RPDHSLVDA---------------VTDSWDKFS-SFEAYDAFTRAWLLACRRVLKPNGTL 102
           + D     A               + D  DK S S  A+  F    L   R +LK +G +
Sbjct: 152 QDDRKFTPAELALLANIDEDEAARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVI 211

Query: 103 WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
           ++    +   ++  +            V+ + N +     R+     +     S   +  
Sbjct: 212 FISIDDNEAAQLKLLCDE---------VFGEGNFVAQLPWRKRTAKSDVPFGISQDYEWI 262

Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                     AA +  + R            R  +
Sbjct: 263 FVFAKSCQFIAATKGKERRYYETDDFPDRPWRTHD 297



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 7/106 (6%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------ 244
           G++ + +  G K+    KP  L+  ++  S+K  D+ILD F GSGT+     +L      
Sbjct: 419 GTKEITDLFGSKIFTFPKPSQLIKFLVSISSKSNDLILDFFAGSGTTAHAVMQLNAEGQN 478

Query: 245 -RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
             R +I +++ +   + +  R A    + +I    +     + RV 
Sbjct: 479 GNRRYICVQLPEKTAEKSEARKAGYPTIFDITKARIEKAAAKIRVE 524


>gi|304439187|ref|ZP_07399105.1| DNA (cytosine-5-)-methyltransferase [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304372319|gb|EFM25907.1| DNA (cytosine-5-)-methyltransferase [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 340

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 75/216 (34%), Gaps = 25/216 (11%)

Query: 51  LQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
           +Q   +    + S+   +   W++                A  R     G LW       
Sbjct: 149 VQYVFETKINNQSIQQWLLSEWERTGLPLKEANKACGVKDAATRKYFNQGHLWYF---PP 205

Query: 111 IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
           + R   +++  N +   D     S       G +  +  E     +      GYT     
Sbjct: 206 VERFEKLVEYANKYGNPDNKPYYST-----NGEKPISKFEWEKMRAKFNCPHGYT----- 255

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEK-LHPTQKPEALLSRILVSSTKPGDIILD 229
                      + W  P  +G+ER++   G K  H  QKP  ++  ++ +S++  D+I +
Sbjct: 256 -----------NVWDRPPLNGTERIKIPSGSKSAHLNQKPLDIMQLLIEASSEFKDVIWE 304

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           PF G  ++   A  L R   G E+   Y  +  +R 
Sbjct: 305 PFGGLFSASLAATNLNRIAYGAEIDPMYYKVGIERF 340


>gi|126734814|ref|ZP_01750560.1| adenine specific DNA methylase MOD [Roseobacter sp. CCS2]
 gi|126715369|gb|EBA12234.1| adenine specific DNA methylase MOD [Roseobacter sp. CCS2]
          Length = 574

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 2/122 (1%)

Query: 149 HETLIWASPSPKAKGYTFN--YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
           H        +   KG  F     +            +  + +       R++ G +    
Sbjct: 282 HRFFTGPKKATATKGKYFQGVPTSKLENANSGNQPIENFLDLAGAFGNCRHEGGVEFRSG 341

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           +KPE LL +IL   +   D+ILD F GSGT+ AVA K++R +I +E+ +        R+A
Sbjct: 342 KKPEVLLQKILTHFSDENDLILDSFAGSGTTAAVAHKMKRKWITVEIGEHCETHVMPRLA 401

Query: 267 SV 268
            +
Sbjct: 402 GI 403



 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 55/167 (32%), Gaps = 20/167 (11%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRP 60
           + S    E ++    + + +IKG+++  L+ L    +  V  ++ DPP+N          
Sbjct: 31  EKSYHAQERKSEGDIFDNVLIKGDNLLALKALEQDYSGLVKCVYIDPPFNTG-------- 82

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
                    + +D       +    R  L   RR+L+ +G L           +  +L  
Sbjct: 83  ------NAFEHYDDGVEHSIWLNLMRERLEILRRLLRRDGFLCAHIDDSEGHYLKVLLDE 136

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAH---ETLIWASPSPKAKGY 164
           +                P    ++  + H   E +     S  AK +
Sbjct: 137 VFGRENYQTTIYLQVRYPQKTLKQDMSYHKQIEMIHIYRNSFDAKPW 183


>gi|170079551|ref|YP_001736185.1| DNA methylase [Synechococcus sp. PCC 7002]
 gi|169887220|gb|ACB00930.1| DNA methylase [Synechococcus sp. PCC 7002]
          Length = 937

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 41/71 (57%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
             EK++  Q    +  R ++ +T PGD++LDP  GSGT+  VA++  R +I I+  +  +
Sbjct: 426 GSEKIYVVQGNPKITERCILMATDPGDLVLDPTCGSGTTAYVAEEWGRRWITIDTSRVAL 485

Query: 259 DIATKRIASVQ 269
            +A  R+ S +
Sbjct: 486 ALARTRLMSAK 496



 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 23/124 (18%)

Query: 19  WKDKIIKGNSISVLEKLPAK-----SVDLIFADPPYNLQL----------------NGQL 57
           W +++I G+S+ V+  L  K      V  I+ DPPY ++                 N   
Sbjct: 133 WSNRMILGDSLLVMNSLAEKEGLKGKVQCIYLDPPYGIKFGSNWQVSTLKRDVKDGNADN 192

Query: 58  YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
                  V A  D+W+      +Y A+ R  L+  R +L   G+ +V     N+  +  +
Sbjct: 193 VTRQPEQVKAFRDTWE--LGIHSYLAYLRDRLVVARELLTETGSCFVQIGDENVHLVRCL 250

Query: 118 LQNL 121
           +  +
Sbjct: 251 MDEV 254


>gi|147921746|ref|YP_684432.1| putative type III restriction-modification system, methylation
           subunit [uncultured methanogenic archaeon RC-I]
 gi|110619828|emb|CAJ35106.1| putative type III restriction-modification system, methylation
           subunit [uncultured methanogenic archaeon RC-I]
          Length = 834

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 40/67 (59%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           +L+  Q    ++ R L+ +T PGDI+LDP  GSGT+  VA++  R +I  +  +  I +A
Sbjct: 413 RLYVVQTSHKVIERCLLMATDPGDIVLDPTCGSGTTAYVAEQWGRRWITCDTSRVAITLA 472

Query: 262 TKRIASV 268
            +R+ + 
Sbjct: 473 KQRLMTA 479



 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 64/172 (37%), Gaps = 24/172 (13%)

Query: 18  EWKDKIIKGNSISVLEKLPAK-----SVDLIFADPPYNLQL----------------NGQ 56
            W +++I G+S+ V+  L  K      V +I+ DPPY ++                   +
Sbjct: 119 NWSNRLIAGDSLLVMNSLLEKEGMAGKVQMIYFDPPYGIKYGSNFQPFVNKRDVKDGKDE 178

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
               +  +V A  D+W+      +Y  + R  LL  + +L  +G+++V  S  N+  +  
Sbjct: 179 DLTSEPEMVKAFRDTWE--LGIHSYLTYLRDRLLLAKELLSDSGSIFVQISDENLHHVRE 236

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
           +L  +  +     +                   + ++W +   K   +   Y
Sbjct: 237 ILDEIFGYNNFINIITFQKTGGISSN-LLGCTIDFILWYAKDIKNVKFRRLY 287


>gi|240013868|ref|ZP_04720781.1| putative type III restriction-modification system methyltransferase
           [Neisseria gonorrhoeae DGI18]
          Length = 656

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 75/215 (34%), Gaps = 32/215 (14%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY 58
             K   A  EN  S    ++ +I+G+++ VL+ L      SV +I+ DPPYN   +G +Y
Sbjct: 81  EDKTHNAKPENAGS----QNLLIRGDNLEVLKHLKNAYANSVKMIYIDPPYNTGSDGFVY 136

Query: 59  RPDHSLVDA---------------VTDSWDKFS-SFEAYDAFTRAWLLACRRVLKPNGTL 102
           + D     A               + D  DK S S  A+  F    L   R +LK +G +
Sbjct: 137 QDDRKFTPAELALLANIDEDEAARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVI 196

Query: 103 WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
           ++    +   ++  +            V+ + N +     R+     +     S   +  
Sbjct: 197 FISIDDNEAAQLKLLCDE---------VFGEGNFVAQLPWRKRTAKSDVPFGISQDYEWI 247

Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                     AA +  + R            R  +
Sbjct: 248 FVFAKSCQFIAATKGKERRYYETDDFPDRPWRTHD 282



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 7/106 (6%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------ 244
           G++ + +  G K+    KP  L+  ++  S+K  D+ILD F GSGT+     +L      
Sbjct: 404 GTKEITDLFGSKIFTFPKPSQLIKFLVSISSKSNDLILDFFAGSGTTAHAVMQLNAEGQN 463

Query: 245 -RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
             R +I +++ +   + +  R A    + +I    +     + RV 
Sbjct: 464 GNRRYICVQLPEKTAEKSEARKAGYPTIFDITKARIEKAAAKIRVE 509


>gi|154499070|ref|ZP_02037448.1| hypothetical protein BACCAP_03062 [Bacteroides capillosus ATCC
           29799]
 gi|150271910|gb|EDM99136.1| hypothetical protein BACCAP_03062 [Bacteroides capillosus ATCC
           29799]
          Length = 529

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 76/220 (34%), Gaps = 11/220 (5%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQL 57
           + ++ S   N   ++    ++ +I G+++  L+ L       V  I+ DPPYN    G +
Sbjct: 24  LERRYSFDENGQMDADNGSENMVIPGDNLEALKALLPRYEGRVKCIYIDPPYNTGNEGWV 83

Query: 58  Y-------RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
           Y       +    L + V    +  S  + +       L    R+L  +G +++      
Sbjct: 84  YNDNVNDPKIKKWLGEVVGKEGEDLSRHDKWLCMMYPRLKLLHRLLAEDGAIFISIDDVE 143

Query: 111 IFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
            + + ++   +         V  + N  P    + F   H+ ++  + +           
Sbjct: 144 FYNLRSICNEVFGEHNFITTVIWRKNFSPKSTAKHFSEDHDYILVFAKNADIWLPHKMPR 203

Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
             K         +D   P  SG    RN  G+ L+    P
Sbjct: 204 TEKQNKAYKNPDNDPRGPWTSGDLAARNYYGKGLYSITTP 243



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 8/77 (10%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIE 252
            G+    T KP  L+ RIL  ++ P  IILD F GSGT+      +       R FI +E
Sbjct: 322 GGDMPFDTPKPSRLIERILQIASDPDSIILDSFAGSGTTAHAVLNMNKADGGNRKFILVE 381

Query: 253 MKQDYID-IATKRIASV 268
           M  DY D I  +R+  V
Sbjct: 382 M-MDYADSITAERVKRV 397


>gi|15828868|ref|NP_326228.1| type III restriction-modification system: methylase [Mycoplasma
           pulmonis UAB CTIP]
 gi|14089811|emb|CAC13570.1| TYPE III RESTRICTION-MODIFICATION SYSTEM: METHYLASE [Mycoplasma
           pulmonis]
          Length = 565

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           + + +    KPE+L+  ++  +T   D++LD   GSGT+ AVA K+ R +IGIE + DYI
Sbjct: 439 NKKTIFNFPKPESLIHYLVNMNTNKNDLVLDFNLGSGTTTAVAHKMGRKYIGIE-QMDYI 497

Query: 259 D-IATKRIASV 268
             I  +R+  V
Sbjct: 498 QNITIERMKKV 508



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 66/339 (19%), Positives = 124/339 (36%), Gaps = 31/339 (9%)

Query: 18  EWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           E  + IIKGN++  L  L       V LI+ DPPYN   +              + +++ 
Sbjct: 171 ENDNLIIKGNNLIALSSLLERYEGKVKLIYIDPPYNTGND--------------SFNYND 216

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL---NFWILNDIVW 131
             +   +  F +  L   R++LK +G ++V    +    +  ++ ++   N +I N +  
Sbjct: 217 SFNHSTWLTFMKNRLELARKLLKEDGVIFVQCDDNEQAYLKVLMDDIFGVNKFIANFMWM 276

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
           + S P    +  R +  +      +     KG       +   NE  +M +    PI + 
Sbjct: 277 KTSTPPSLSKNVRKKLEYILCYTKNSISGLKGGIVEGGDMPLLNEANKMVT-LHFPINTV 335

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           S ++++   +K    +        +  +  K   II   F  S  +     K +  FI +
Sbjct: 336 SFKIKDNLYQKGQKDKVYLEQDLLVKDNYNKNELIITGNFKWSQETLLEEIKNKTQFI-V 394

Query: 252 EMKQDYIDIAT--KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ-PGQ----- 303
           +  +  I      +RI     L +    ++       +    L  ++ +   P       
Sbjct: 395 KSDKFAIRYMRLGERIKVPSNLISKVECLVGTNEDAKKELEALFNKKTIFNFPKPESLIH 454

Query: 304 ILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSE 342
            L N   N +  V  D  L SGT     H++G K  G E
Sbjct: 455 YLVNMNTNKNDLVL-DFNLGSGTTTAVAHKMGRKYIGIE 492


>gi|329849606|ref|ZP_08264452.1| DNA methylase family protein [Asticcacaulis biprosthecum C19]
 gi|328841517|gb|EGF91087.1| DNA methylase family protein [Asticcacaulis biprosthecum C19]
          Length = 959

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 39/68 (57%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           +L+  Q    ++ R ++ +T PGD++LDP  GSGT+   A++  R +I I+  +  I +A
Sbjct: 420 RLYVVQTATKVVQRCILMTTDPGDLVLDPTCGSGTTAYAAEQWGRRWITIDTSRVAIALA 479

Query: 262 TKRIASVQ 269
             R+   +
Sbjct: 480 RSRLMGAR 487



 Score = 65.8 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 23/126 (18%)

Query: 17  FEWKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSL------- 64
             W +++I G+S+SV+  L         V  I+ DPPY ++ N        S        
Sbjct: 129 QHWANRMISGDSLSVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGAK 188

Query: 65  ---------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
                    V A  D+W       +Y  + R  L+  R +L  +G+++V     N+ R+ 
Sbjct: 189 DHITREPEQVRAFRDTWKD--GIHSYLTYLRDRLVVARDLLHESGSIFVQIGDENVHRVR 246

Query: 116 TMLQNL 121
           +++  +
Sbjct: 247 SLMDEV 252


>gi|145639457|ref|ZP_01795062.1| putative type III restriction-modification system methyltransferase
           [Haemophilus influenzae PittII]
 gi|145271504|gb|EDK11416.1| putative type III restriction-modification system methyltransferase
           [Haemophilus influenzae PittII]
 gi|309751703|gb|ADO81687.1| Probable Type III restriction-modification system enzyme Res
           [Haemophilus influenzae R2866]
          Length = 548

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 76/204 (37%), Gaps = 25/204 (12%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLY 58
                    ENQNS    ++ +I+G+++ VL+ L       + +I+ DPPYN   +G +Y
Sbjct: 3   EDIEHNQKTENQNS----ENVLIQGDNLEVLKHLKHAYKNQIKMIYIDPPYNTGSDGFVY 58

Query: 59  RPDHSLV---------------DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW 103
           + D                     +  +  K +S  A+  F    L   R +L+ +G ++
Sbjct: 59  QDDRKFTPQQLVELGMDLEEAERVLEFTAKKSNSHSAWLTFMYPRLYIARELLRDDGVIF 118

Query: 104 VIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
           +    +   ++  +   +      + + VW+      N         HE +   S +   
Sbjct: 119 ISIDDNEQAQLKILCDEVFGEENFVAEFVWKSRQNKDNRNITGASIDHEYIFCYSKTNLY 178

Query: 162 KG-YTFNYDALKAANEDVQMRSDW 184
           K       D  + +N D   R +W
Sbjct: 179 KALRGAERDTSQYSNPDNDPRGNW 202



 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 67/194 (34%), Gaps = 32/194 (16%)

Query: 106 GSYHNIFRIGTMLQNLNFWILNDIV---WRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
           G++ +   +G + ++       D++      +   P    R  +N  + LI       A+
Sbjct: 200 GNWASGNMVGLLPEDQRPNCHYDLINPKTGINYGKPKLGWRYDKNTMQRLIDEDRILWAE 259

Query: 163 GYTFNYDALKAANEDVQMRSDWL------IPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
             T         NE  +  + +       I   +G+  L +    K     K   L+ ++
Sbjct: 260 LPTGRPRRKVFFNELTEQYTGFSSILGKDIYTRNGTAELEDLFEAKYFDFPKSIQLIKQL 319

Query: 217 L-VSSTKPGDIILDPFFGSGTSGAVAKKL--------RRSFIGI-------EMKQDY--- 257
           +  +   P D+ILD F GSGT+     +L         R FI +       E  + Y   
Sbjct: 320 IEQAILNPNDLILDFFAGSGTTAHAVMQLNAEDEDNGNRKFICVQLPEPTDEKSEAYKAG 379

Query: 258 ----IDIATKRIAS 267
                DI   RI  
Sbjct: 380 YKTIFDITKARIEK 393


>gi|19705364|ref|NP_602859.1| BslIM [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|19713347|gb|AAL94158.1| BslIM [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 676

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 88/261 (33%), Gaps = 35/261 (13%)

Query: 23  IIKGNSISVL--EKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS------- 71
           II  NS   L  + L  K   +      PPY    N + Y    +L+    D        
Sbjct: 431 IINANSTDALYNKILKQKNIKIGAAITSPPYF---NAREYSQWSNLICYFIDMMINAKSV 487

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGT----LWVIGSYHNIFRIGTMLQNLNFWILN 127
           +D   +   Y       +      +K N +    +    S      +G   ++   W   
Sbjct: 488 FDNMENNGTYIYNIGDIVDQDNIYVKSNMSKRRQMLGFYSILIFNIVGYQCESNIIWDKG 547

Query: 128 DIVWRKSNPMPNFRGR-RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           ++  ++++   +F G  +  N +E  +    + K   Y           +   ++ D +I
Sbjct: 548 EVQSKRNSTPNHFPGYLKPINVYEHALVFKKTNKEIEYK----------KTQVVKIDPVI 597

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            I S  + +        H    P  L   I+          LDP+ GSG++     K   
Sbjct: 598 KINSKGKNILG------HTAPFPIELAELIIPYIYNKDYYTLDPYLGSGSTLIAMIKNEL 651

Query: 247 SFIGIEMKQDYIDIATKRIAS 267
             IG E+ +DY  +A  RI  
Sbjct: 652 KGIGFEINKDYFSLAYSRIND 672


>gi|57505937|ref|ZP_00371861.1| site-specific DNA-methyltransferase, putative [Campylobacter
           upsaliensis RM3195]
 gi|57015737|gb|EAL52527.1| site-specific DNA-methyltransferase, putative [Campylobacter
           upsaliensis RM3195]
          Length = 277

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 42/99 (42%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
            YD     N+        L      SE+         HP       + +++   TK   +
Sbjct: 5   KYDKRNTLNDLTGKEWLKLSSSFWFSEKCAADKDALRHPAPFLIKDIEKLISLFTKEKMV 64

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           +LD F GSGT+   A  L+R  IG ++  +Y+D+A +R 
Sbjct: 65  VLDIFCGSGTTLLSAYNLKRQGIGFDLNLEYLDLARERF 103



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 27/159 (16%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPY-------------NLQLNGQLYRPDHSLVDAVTDSW 72
           G++  +L++L  +S+D I   PPY             N    G        +     D++
Sbjct: 118 GDNTKLLQELEDESIDYIVTSPPYFNILKNKASGLRANKSEKGFRNGARQGIQSYGDDNF 177

Query: 73  D--KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR--------IGTMLQNLN 122
           +     ++E +     +    CRRVLK    L +I S   I +        I  ++Q  N
Sbjct: 178 NLENSKNYEEFLEKIFSIFSECRRVLKTKKYLSIIISDFTIDKKEVCVTGDIVRIMQKAN 237

Query: 123 FWILNDIVWRKSN----PMPNFRGRRFQNAHETLIWASP 157
           F  + +I   +SN    P       +  + ++ ++    
Sbjct: 238 FEFVGNIALLQSNKPLYPFGYPYAYKINHHNQNILNFRK 276


>gi|254671412|emb|CBA08903.1| Adenine specific DNA methylase Mod [Neisseria meningitidis
           alpha153]
          Length = 487

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 75/215 (34%), Gaps = 32/215 (14%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY 58
             K   A  EN  S    ++ +I+G+++ VL+ L      SV +I+ DPPYN   +G +Y
Sbjct: 23  EDKTHNAKPENAGS----QNLLIRGDNLEVLKHLKNAYTNSVKMIYIDPPYNTGSDGFVY 78

Query: 59  RPDHSLVDA---------------VTDSWDKFS-SFEAYDAFTRAWLLACRRVLKPNGTL 102
           + D     A               + D  DK S S  A+  F    L   R +LK +G +
Sbjct: 79  QDDRKFTPAELALLANIDEDEAARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVI 138

Query: 103 WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
           ++    +   ++  +            V+ + N +     R+     +     S   +  
Sbjct: 139 FISIDDNEAAQLKLLCDE---------VFGEGNFVAQLPWRKRTAKSDVPFGISQDYEWI 189

Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                     AA +  + R            R  +
Sbjct: 190 FVFAKSCQFIAATKGKERRYYETDDFPDRPWRTHD 224



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 7/106 (6%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------ 244
           G++ + +  G K+    KP  L+  ++  S+K  D+ILD F GSGT+     +L      
Sbjct: 346 GTKEITDLFGSKIFTFPKPSQLIKFLVSISSKSNDLILDFFAGSGTTAHAVMQLNAEGQN 405

Query: 245 -RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
             R +I +++ +   + +  R A    + +I    +     + RV 
Sbjct: 406 GNRRYICVQLPEKTAEKSEARKAGYPTIFDITKARIEKAAAKIRVE 451


>gi|298253554|ref|ZP_06977344.1| DNA methylase [Gardnerella vaginalis 5-1]
 gi|297532321|gb|EFH71209.1| DNA methylase [Gardnerella vaginalis 5-1]
          Length = 215

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 14/107 (13%)

Query: 20  KDKIIKGNS--ISVLEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + +II G++  +   + L     V+L+  DPPYN+   G   +  +          D   
Sbjct: 120 RHRIICGDATKLETYKTLLENTKVNLVVTDPPYNVNYEGAAGKIKN----------DNME 169

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
             + Y  F     +   + +  + +++V  +           Q+  F
Sbjct: 170 DDKFY-QFLFNSFVNMEQAMADDASIYVFHADTEGLNFRKAFQDARF 215


>gi|118576380|ref|YP_876123.1| DNA modification methylase [Cenarchaeum symbiosum A]
 gi|3599390|gb|AAC62696.1| site-specific DNA methyltransferase [Cenarchaeum symbiosum]
 gi|118194901|gb|ABK77819.1| DNA modification methylase [Cenarchaeum symbiosum A]
          Length = 358

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 3/120 (2%)

Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
            H    +      A                   R      +   S +  + +    H   
Sbjct: 222 KHCPTCYRKFKRHATRKRIGGHEHYPIFAACNPRGKNPGNVWEISTKAHHGNE---HFAV 278

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            PE L+SRI+  +T+ GD +LDPF G GT+G V+  L+R F GI++    +D   + +  
Sbjct: 279 FPEDLVSRIVKFATREGDYVLDPFAGRGTTGIVSACLKRGFTGIDLYPANVDRTRRNVKD 338



 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 23/149 (15%)

Query: 22  KIIKGNSISVLEKLPAK-----SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           ++I+G++ +VL +L  K        L    PPY      + Y  D S          +  
Sbjct: 6   QVIRGDARAVLPRLAKKNGERGRYRLAVTSPPY---YGHRKYGSDPS-------ELGQEG 55

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWV-IGSYHN-------IFRIGTMLQNLNFWILND 128
           + + +         +C  +L  +G+L++ IG             R+   L +L +    D
Sbjct: 56  TPDEFVEELAGVFKSCMDLLTDDGSLFIVIGDTRRRRRKLMVPHRLALRLVDLGYHFQED 115

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASP 157
           IVW K N +     +    A+E ++  S 
Sbjct: 116 IVWYKKNALSQSSKQNLTQAYEFVLVLSK 144


>gi|319897862|ref|YP_004136059.1| type iii restriction-modification system methyltransferase
           [Haemophilus influenzae F3031]
 gi|317433368|emb|CBY81748.1| putative type III restriction-modification system methyltransferase
           [Haemophilus influenzae F3031]
          Length = 626

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 76/204 (37%), Gaps = 25/204 (12%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLY 58
                    ENQNS    ++ +I+G+++ VL+ L       + +I+ DPPYN   +G +Y
Sbjct: 83  EDIEHNQKPENQNS----ENVLIQGDNLEVLKHLKHAYKNQIKMIYIDPPYNTGSDGFVY 138

Query: 59  RPDHSLV---------------DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW 103
           + D                     +  +  K +S  A+  F    L   R +L+ +G ++
Sbjct: 139 QDDRKFTPQQLVELGMDLEEAERVLEFTAKKSNSHSAWLTFMYPRLYIARELLRDDGVIF 198

Query: 104 VIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
           +    +   ++  +   +      + + VW+      N         HE +   S +   
Sbjct: 199 ISIDDNEQAQLKILCDEVFGEENFVAEFVWKSRQNKDNRNITGASIDHEYIFCYSKTNLY 258

Query: 162 KG-YTFNYDALKAANEDVQMRSDW 184
           K       D  + +N D   R +W
Sbjct: 259 KALRGAERDTSQYSNPDNDPRGNW 282



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 67/192 (34%), Gaps = 30/192 (15%)

Query: 106 GSYHNIFRIGTMLQNLNFWILNDIV---WRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
           G++ +   +G + ++       D++      +   P    R  +N  + LI       A+
Sbjct: 280 GNWASGNMVGLLPEDQRPNCHYDLINPKTGINYGKPKLGWRYDKNTMQRLIDEDRILWAE 339

Query: 163 GYTFNYDALKAANEDVQMRSDWL------IPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
             T         NE  +  + +       I   +G+  L +    K     K   L+ ++
Sbjct: 340 LPTGRPRRKVFFNELTEQYTGFSSILGKDIYTRNGTAELEDLFEAKYFDFPKSIQLIKQL 399

Query: 217 L-VSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGI-------EMKQDY----- 257
           +  +   P D+ILD F GSGT+     +L       R FI +       E  + Y     
Sbjct: 400 IEQAILNPNDLILDFFAGSGTTAHAVMQLNAEGKGNRKFICVQLPEPTNEKSEAYKAGYK 459

Query: 258 --IDIATKRIAS 267
              DI   RI  
Sbjct: 460 TIFDITKARIEK 471


>gi|189346973|ref|YP_001943502.1| DNA methylase N-4/N-6 domain protein [Chlorobium limicola DSM 245]
 gi|189341120|gb|ACD90523.1| DNA methylase N-4/N-6 domain protein [Chlorobium limicola DSM 245]
          Length = 906

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 62/163 (38%), Gaps = 3/163 (1%)

Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
            +   + +G M         +  +            R++    + +     + +   ++ 
Sbjct: 310 DFKEEYELGDMTSQHPSDTRSCEIEFHGEYFKPSSARQWAFDPQNIYRLEKADRVVRFS- 368

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
             +      +    R+           +      +K++  Q    ++ R ++ +T PGD+
Sbjct: 369 --EKQIRWKKYSSERAKGKFHNVWTDTQFGAFASDKIYVVQTHRKVIDRCILMATDPGDL 426

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           ++DP  GSGT+  VA++  R +I I+  +  + +A  RI   +
Sbjct: 427 VIDPTCGSGTTAYVAEQWGRRWITIDTSRVALALARARIMGAR 469



 Score = 67.7 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 23/124 (18%)

Query: 19  WKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSL--------- 64
           W +++I G+S+ V+  L         V  I+ DPPY ++ N        S          
Sbjct: 131 WANRMILGDSLQVMASLAEREGLRGKVQCIYIDPPYGIKFNSNFQWSTTSRDVKDGNTDH 190

Query: 65  -------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
                  V A  D+W       +Y  + R  L   R +L  +G+++V     N+ R+  +
Sbjct: 191 ITREPEQVKAFRDTW--RDGIHSYLTYLRDRLTVARDLLTESGSIFVQIGDENVHRVRAL 248

Query: 118 LQNL 121
           +  +
Sbjct: 249 MDEV 252


>gi|309796420|ref|ZP_07690828.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 145-7]
 gi|308119925|gb|EFO57187.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 145-7]
          Length = 415

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 84/277 (30%), Gaps = 71/277 (25%)

Query: 37  AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
            + V L    PP+ L       R      +     W           F    L    + L
Sbjct: 127 DEPVHLCVTSPPFPL-------RIQRGYGNVDEAKW---------VDFITQALEPIVKNL 170

Query: 97  KPNGT--------LWVIGSYHNIFRIGTML----QNLNFWILNDIVWRKSNPMPNFRGRR 144
            P G+        ++   S      +  M+      L   +++   W   +  P+     
Sbjct: 171 VPGGSVVLNVSNDIFEAKSPSRSLYVERMVLALHDRLGLSLMDRWPWINLSKPPSPTHWA 230

Query: 145 FQNAH------ETLIWASPSPKA---------KGYTFNYDALKAANED----------VQ 179
             N +      E + W +  P             +T  +  L A   D           +
Sbjct: 231 CVNRYQLCAGWEPVYWFTNDPDRVRSDNRRVLIPHTEKHQKLMAQGGDNRVVSYGDGAYR 290

Query: 180 MRSDWLIPICSGS------------------ERLRNKDGEKLHPTQKPEALLSRILVSST 221
           +R +    +  G                    R+  + G   HP   P  +    +   T
Sbjct: 291 LRGNAFSNVTEGRIPKNVIQRGHRCADTLELRRIARELGLPPHPAMFPTDIPEMAIRFLT 350

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           + GD+++DPF GS  SG  A++  R +I  ++  +YI
Sbjct: 351 EEGDLVVDPFSGSNKSGLAAERNNRRWIACDIILEYI 387


>gi|194098944|ref|YP_002002009.1| Putative type III restriction-modification system methyltransferase
           [Neisseria gonorrhoeae NCCP11945]
 gi|239999224|ref|ZP_04719148.1| putative type III restriction-modification system methyltransferase
           [Neisseria gonorrhoeae 35/02]
 gi|240016311|ref|ZP_04722851.1| putative type III restriction-modification system methyltransferase
           [Neisseria gonorrhoeae FA6140]
 gi|240113199|ref|ZP_04727689.1| putative type III restriction-modification system methyltransferase
           [Neisseria gonorrhoeae MS11]
 gi|240115959|ref|ZP_04730021.1| putative type III restriction-modification system methyltransferase
           [Neisseria gonorrhoeae PID18]
 gi|240123804|ref|ZP_04736760.1| putative type III restriction-modification system methyltransferase
           [Neisseria gonorrhoeae PID332]
 gi|254493988|ref|ZP_05107159.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|260440228|ref|ZP_05794044.1| putative type III restriction-modification system methyltransferase
           [Neisseria gonorrhoeae DGI2]
 gi|268599279|ref|ZP_06133446.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268601624|ref|ZP_06135791.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268682428|ref|ZP_06149290.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|193934234|gb|ACF30058.1| Putative type III restriction-modification system methyltransferase
           [Neisseria gonorrhoeae NCCP11945]
 gi|226513028|gb|EEH62373.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268583410|gb|EEZ48086.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268585755|gb|EEZ50431.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268622712|gb|EEZ55112.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
          Length = 598

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 75/215 (34%), Gaps = 32/215 (14%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY 58
             K   A  EN  S    ++ +I+G+++ VL+ L      SV +I+ DPPYN   +G +Y
Sbjct: 23  EDKTHNAKPENAGS----QNLLIRGDNLEVLKHLKNAYANSVKMIYIDPPYNTGSDGFVY 78

Query: 59  RPDHSLVDA---------------VTDSWDKFS-SFEAYDAFTRAWLLACRRVLKPNGTL 102
           + D     A               + D  DK S S  A+  F    L   R +LK +G +
Sbjct: 79  QDDRKFTPAELALLANIDEDEAARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVI 138

Query: 103 WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
           ++    +   ++  +            V+ + N +     R+     +     S   +  
Sbjct: 139 FISIDDNEAAQLKLLCDE---------VFGEGNFVAQLPWRKRTAKSDVPFGISQDYEWI 189

Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                     AA +  + R            R  +
Sbjct: 190 FVFAKSCQFIAATKGKERRYYETDDFPDRPWRTHD 224



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 7/106 (6%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------ 244
           G++ + +  G K+    KP  L+  ++  S+K  D+ILD F GSGT+     +L      
Sbjct: 346 GTKEITDLFGSKIFTFPKPSQLIKFLVSISSKSNDLILDFFAGSGTTAHAVMQLNAEGQN 405

Query: 245 -RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
             R +I +++ +   + +  R A    + +I    +     + RV 
Sbjct: 406 GNRRYICVQLPEKTAEKSEARKAGYPTIFDITKARIEKAAAKIRVE 451


>gi|330892394|gb|EGH25055.1| DNA methylase N-4/N-6 domain-containing protein [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 628

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 72/193 (37%), Gaps = 14/193 (7%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + II+G++   L  L A     + +I  DPPYN      +Y  D+   D   D W     
Sbjct: 73  NLIIEGDNFDSLRLLKATHAGKIHVILIDPPYNTGNKDWVYNDDYVKKD---DRW----R 125

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF-WILNDIVWRKSNP 136
              +  F    +   R +L P+G + V  +  N  R+  ++  +     L   VW+  + 
Sbjct: 126 HSKWLEFMYQRMTLARDLLTPDGVILVCINDENRARLEMLMDEVFPGRRLGAFVWKTRSG 185

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
             + + R   +    L++  P  K  G T ++      N D   R  W      G    R
Sbjct: 186 SNDEQARFSVDHEYVLVYGLPDFKFNGETKDFSQY--KNPDKDPRGPWKTGDL-GKGHTR 242

Query: 197 NKDGEKLHPTQKP 209
            +     +P Q P
Sbjct: 243 IERPNAYYPIQNP 255



 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 15/84 (17%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGI-- 251
           G    P  KP +L+  IL  +T+P   +LD F GSGT+G     L       R FI    
Sbjct: 409 GYNAFPYPKPISLIRNILQQATRPDSTVLDFFAGSGTTGHAVLALNAEDGGDRKFILCSS 468

Query: 252 ----EMKQD---YIDIATKRIASV 268
               E         D+  +RI  V
Sbjct: 469 SEATEKDPAKNLCRDVCAERIRRV 492


>gi|308389379|gb|ADO31699.1| putative type III restriction-modification [Neisseria meningitidis
           alpha710]
          Length = 598

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 75/215 (34%), Gaps = 32/215 (14%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY 58
             K   A  EN  S    ++ +I+G+++ VL+ L      SV +I+ DPPYN   +G +Y
Sbjct: 23  EDKTHNAKPENAGS----QNLLIRGDNLEVLKHLKNAYANSVKMIYIDPPYNTGSDGFVY 78

Query: 59  RPDHSLVDA---------------VTDSWDKFS-SFEAYDAFTRAWLLACRRVLKPNGTL 102
           + D     A               + D  DK S S  A+  F    L   R +LK +G +
Sbjct: 79  QDDRKFTPAELALLANIDEDEAARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVI 138

Query: 103 WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
           ++    +   ++  +            V+ + N +     R+     +     S   +  
Sbjct: 139 FISIDDNEAAQLKLLCDE---------VFGEGNFVAQLPWRKRTAKSDVPFGISQDYEWI 189

Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                     AA +  + R            R  +
Sbjct: 190 FVFAKSCQFIAATKGKERRYYETDDFPDRPWRTHD 224



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 7/106 (6%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------ 244
           G++ + +  G K+    KP  L+  ++  S+K  D+ILD F GSGT+     +L      
Sbjct: 346 GTKEITDLFGSKIFTFPKPSQLIKFLVSISSKSNDLILDFFAGSGTTAHAVMQLNAEGQN 405

Query: 245 -RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
             R +I +++ +   + +  R A    + +I    +     + RV 
Sbjct: 406 GNRRYICVQLPEKTAEKSEARKAGYPTIFDITKARIEKAAAKIRVE 451


>gi|134044472|ref|YP_001101743.1| DNA methylase [Yersinia ruckeri]
 gi|133904835|gb|ABO40852.1| DNA methylase [Yersinia ruckeri]
          Length = 414

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 84/277 (30%), Gaps = 71/277 (25%)

Query: 37  AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
            + V L    PP+ L       R      +     W           F    L    + L
Sbjct: 126 DEPVHLCVTSPPFPL-------RIQRGYGNVDEAKW---------VDFITQALEPIVKNL 169

Query: 97  KPNGT--------LWVIGSYHNIFRIGTML----QNLNFWILNDIVWRKSNPMPNFRGRR 144
            P G+        ++   S      +  M+      L   +++   W   +  P+     
Sbjct: 170 VPGGSVVLNVSNDIFEAKSPSRSLYVERMVLALHDRLGLSLMDRWPWINLSKPPSPTHWA 229

Query: 145 FQNAH------ETLIWASPSPKA---------KGYTFNYDALKAANED----------VQ 179
             N +      E + W +  P             +T  +  L A   D           +
Sbjct: 230 CVNRYQLCAGWEPVYWFTNDPDRVRSDNRRVLIPHTEKHQKLMAQGGDNRVVSYGDGAYR 289

Query: 180 MRSDWLIPICSGS------------------ERLRNKDGEKLHPTQKPEALLSRILVSST 221
           +R +    +  G                    R+  + G   HP   P  +    +   T
Sbjct: 290 LRGNAFSNVTEGRIPKNVIQRGHRCADTLELRRIARELGLPPHPAMFPTDIPEMAIRFLT 349

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           + GD+++DPF GS  SG  A++  R +I  ++  +YI
Sbjct: 350 EEGDLVVDPFSGSNKSGLAAERNNRRWIACDIILEYI 386


>gi|258624188|ref|ZP_05719138.1| DNA methylase [Vibrio mimicus VM603]
 gi|258583619|gb|EEW08418.1| DNA methylase [Vibrio mimicus VM603]
          Length = 414

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 84/277 (30%), Gaps = 71/277 (25%)

Query: 37  AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
            + V L    PP+ L       R      +     W           F    L    + L
Sbjct: 126 DEPVHLCVTSPPFPL-------RIQRGYGNVDEAKW---------VDFITLALEPIVKNL 169

Query: 97  KPNGT--------LWVIGSYHNIFRIGTML----QNLNFWILNDIVWRKSNPMPNFRGRR 144
            P G+        ++   S      +  M+      L   +++   W   +  P+     
Sbjct: 170 VPGGSVVLNVSNDIFEAKSPSRSLYVERMVLALHDRLGLSLMDRWPWINLSKPPSPTHWA 229

Query: 145 FQNAH------ETLIWASPSPKA---------KGYTFNYDALKAANED----------VQ 179
             N +      E + W +  P             +T  +  L A   D           +
Sbjct: 230 CVNRYQLCAGWEPVYWFTNDPDRVRSDNRRVLIPHTEKHQKLMAQGGDSRVVSYGDGAYR 289

Query: 180 MRSDWLIPICSGS------------------ERLRNKDGEKLHPTQKPEALLSRILVSST 221
           +R +    +  G                    R+  + G   HP   P  +    +   T
Sbjct: 290 LRGNAFSNVTEGRIPKNVIQRGHRCADTLELRRMARELGLPPHPAMFPTDIPEMAIRFLT 349

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           + GD+++DPF GS  SG  A++  R +I  ++  +YI
Sbjct: 350 EEGDLVVDPFSGSNKSGLAAERNNRRWIACDIILEYI 386


>gi|268595048|ref|ZP_06129215.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|291043524|ref|ZP_06569240.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|268548437|gb|EEZ43855.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|291011987|gb|EFE03976.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
          Length = 631

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 75/215 (34%), Gaps = 32/215 (14%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY 58
             K   A  EN  S    ++ +I+G+++ VL+ L      SV +I+ DPPYN   +G +Y
Sbjct: 56  EDKTHNAKPENAGS----QNLLIRGDNLEVLKHLKNAYANSVKMIYIDPPYNTGSDGFVY 111

Query: 59  RPDHSLVDA---------------VTDSWDKFS-SFEAYDAFTRAWLLACRRVLKPNGTL 102
           + D     A               + D  DK S S  A+  F    L   R +LK +G +
Sbjct: 112 QDDRKFTPAELALLANIDEDEAARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVI 171

Query: 103 WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
           ++    +   ++  +            V+ + N +     R+     +     S   +  
Sbjct: 172 FISIDDNEAAQLKLLCDE---------VFGEGNFVAQLPWRKRTAKSDVPFGISQDYEWI 222

Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                     AA +  + R            R  +
Sbjct: 223 FVFAKSCQFIAATKGKERRYYETDDFPDRPWRTHD 257



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 7/106 (6%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------ 244
           G++ + +  G K+    KP  L+  ++  S+K  D+ILD F GSGT+     +L      
Sbjct: 379 GTKEITDLFGSKIFTFPKPSQLIKFLVSISSKSNDLILDFFAGSGTTAHAVMQLNAEGQN 438

Query: 245 -RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
             R +I +++ +   + +  R A    + +I    +     + RV 
Sbjct: 439 GNRRYICVQLPEKTAEKSEARKAGYPTIFDITKARIEKAAAKIRVE 484


>gi|297374642|emb|CBL42929.1| DNA methylase N-4/N-6 [Candidatus Magnetobacterium bavaricum]
          Length = 221

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 72/202 (35%), Gaps = 44/202 (21%)

Query: 20  KDKIIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQ------LYRPDHSLVDAVTDSW 72
           ++K+  G+++ VLE+ +   SVDLI+ DPP+N   +              + V A  D+W
Sbjct: 5   RNKLYYGDNLYVLERYIKDDSVDLIYLDPPFNSNADYSVLFKEPTGEVSEAQVTAFEDTW 64

Query: 73  D-------------------------------KFSSFEAYDAFTRAWLLACRRVLKPNGT 101
                                           K +   AY       L+  +RVLK  G+
Sbjct: 65  HWTQETEVAFQRIVDRGTVDVVETMAAFRRFIKRNDMMAYLVMMCVRLIELKRVLKDTGS 124

Query: 102 LWVIGSYHNIFRIGTMLQNLNFW--ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
           +++         +  ++  +       N+IVW  +           + +   L +     
Sbjct: 125 IYLHCDPTASHYLKVIMDAIFGIKNFRNEIVWHYTGWNKRLSKWFEKRSDSILFYCK--- 181

Query: 160 KAKGYTFNYDALKAANEDVQMR 181
            +    FN  + + A+++  ++
Sbjct: 182 -SDNQQFNSYSTQWASKEEYVK 202


>gi|33323516|gb|AAQ07486.1|AF503408_10 Mod [Enterobacteria phage P7]
          Length = 646

 Score = 73.5 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 73/185 (39%), Gaps = 23/185 (12%)

Query: 1   MSQKNSLAINENQNSIFEWKDK---IIKGNSISVLEKL---PAKSVDLIFADPPYNLQLN 54
           +  K  LA ++  N   E K+    +IKG+++ VL+ +    A+ V++I+ DPPYN   +
Sbjct: 72  LPPKTLLAEDKTHNQQEENKNSQNLLIKGDNLEVLKHMVNAYAEKVNMIYIDPPYNTGKD 131

Query: 55  GQLYRPDHS--------LVDAVTDSWDKF--------SSFEAYDAFTRAWLLACRRVLKP 98
           G +Y  D          L     D  ++         SS  A+  F    L   R +LK 
Sbjct: 132 GFVYNDDRKFTPEQLSELAGIELDEANRILEFTTKGSSSHSAWLTFIYPRLYIARELLKE 191

Query: 99  NGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
           +G +++    +   ++G +   +         +    N   N     F + HE +   + 
Sbjct: 192 DGVIFISIDDNEDKQLGLLCDEVFGQGNFVAKLPTIMNLKGNHDNFGFSDTHEYIYVYAK 251

Query: 158 SPKAK 162
           +    
Sbjct: 252 NKDVC 256



 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 80/233 (34%), Gaps = 35/233 (15%)

Query: 66  DAVTDSWDKFSSFEAYDAF-----TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
             V   WD+    + Y  F      +       R  +P G   V  +  N   +    + 
Sbjct: 266 SEVEKEWDE----DEYGLFKRADTLKRTGQDASRKSRPKGWFPVFINSENKVYVTDDDKP 321

Query: 121 LN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
           LN   ++L  +         ++  ++  +    LI          Y     AL       
Sbjct: 322 LNEDDYVLYPVSPTGEELSWSWGKKKINDEFYNLIVIDIKDGKNIYKKQRPALGEL-PTK 380

Query: 179 QMRSDWLIP---ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
           + +S W  P     + +  L+N  G KL    KP  L++ ++   TK   ++LD F GSG
Sbjct: 381 KPKSIWYKPEYSTSTATTELKNLLGAKLFEGPKPVPLITDLVKIGTKKDSLVLDFFAGSG 440

Query: 236 TSGAVAKKLR------RSFIGIEMKQ-------DY-------IDIATKRIASV 268
           T+      L       R+FI I+  +        Y        +I  KRI  V
Sbjct: 441 TTAEAVAYLNEKDSGCRNFICIQKDEVINKTKNAYSLGYRSIFEITKKRIQEV 493


>gi|135252|sp|P08763|T3MO_BPP1 RecName: Full=Type III restriction-modification system EcoPI enzyme
           mod; Short=M.EcoPI; AltName: Full=EcoPI
           methyltransferase
 gi|15139|emb|CAA29614.1| unnamed protein product [Enterobacteria phage P1]
          Length = 646

 Score = 73.5 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 73/185 (39%), Gaps = 23/185 (12%)

Query: 1   MSQKNSLAINENQNSIFEWKDK---IIKGNSISVLEKL---PAKSVDLIFADPPYNLQLN 54
           +  K  LA ++  N   E K+    +IKG+++ VL+ +    A+ V++I+ DPPYN   +
Sbjct: 72  LPPKTLLAEDKTHNQQEENKNSQNLLIKGDNLEVLKHMVNAYAEKVNMIYIDPPYNTGKD 131

Query: 55  GQLYRPDHS--------LVDAVTDSWDKF--------SSFEAYDAFTRAWLLACRRVLKP 98
           G +Y  D          L     D  ++         SS  A+  F    L   R +LK 
Sbjct: 132 GFVYNDDRKFTPEQLSELAGIELDEANRILEFTTKGSSSHSAWLTFIYPRLYIARELLKE 191

Query: 99  NGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
           +G +++    +   ++G +   +         +    N   N     F + HE +   + 
Sbjct: 192 DGVIFISIDDNEDKQLGLLCDEVFGQGNFVAKLPTIMNLKGNHDNFGFSDTHEYIYVYAK 251

Query: 158 SPKAK 162
           +    
Sbjct: 252 NKDVC 256



 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 80/233 (34%), Gaps = 35/233 (15%)

Query: 66  DAVTDSWDKFSSFEAYDAF-----TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
             V   WD+    + Y  F      +       R  +P G   V  +  N   +    + 
Sbjct: 266 SEVEKEWDE----DEYGLFKRADTLKRTGQDASRKSRPKGWFPVFINSENKVYVTDDDKP 321

Query: 121 LN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
           LN   ++L  +         ++  ++  +    LI          Y     AL       
Sbjct: 322 LNEDDYVLYPVSPTGEELSWSWGKKKINDEFYNLIVIDIKDGKNIYKKQRPALGEL-PTK 380

Query: 179 QMRSDWLIP---ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
           + +S W  P     + +  L+N  G KL    KP  L++ ++   TK   ++LD F GSG
Sbjct: 381 KPKSIWYKPEYSTSTATTELKNLLGAKLFEGPKPVPLITDLVKIGTKKDSLVLDFFAGSG 440

Query: 236 TSGAVAKKLR------RSFIGIEMKQ-------DY-------IDIATKRIASV 268
           T+      L       R+FI I+  +        Y        +I  KRI  V
Sbjct: 441 TTAEAVAYLNEKDSGCRNFICIQKDEVINKTKNAYSLGYRSIFEITKKRIQEV 493


>gi|322368971|ref|ZP_08043538.1| DNA methylase N-4/N-6 domain-containing protein [Haladaptatus
           paucihalophilus DX253]
 gi|320551702|gb|EFW93349.1| DNA methylase N-4/N-6 domain-containing protein [Haladaptatus
           paucihalophilus DX253]
          Length = 143

 Score = 73.5 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 37/56 (66%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           +    HPTQKPE  L +I+ +++   D++LD F GSGT+ AVA++  R+++G E  
Sbjct: 80  NERADHPTQKPEEHLRKIVWATSDKDDLVLDSFGGSGTTYAVAEQFGRNWVGTENS 135


>gi|324007550|gb|EGB76769.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 57-2]
          Length = 415

 Score = 73.5 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 84/277 (30%), Gaps = 71/277 (25%)

Query: 37  AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
            + V L    PP+ L       R      +     W           F    L    + L
Sbjct: 127 DEPVHLCVTSPPFPL-------RIQRGYGNVDEAKW---------VDFITQALEPIVKNL 170

Query: 97  KPNGT--------LWVIGSYHNIFRIGTML----QNLNFWILNDIVWRKSNPMPNFRGRR 144
            P G+        ++   S      +  M+      L   +++   W   +  P+     
Sbjct: 171 VPGGSVVLNVSNDIFEAKSPSRSLYVERMVLALHDRLGLSLMDRWPWINLSKPPSPTHWA 230

Query: 145 FQNAH------ETLIWASPSPKA---------KGYTFNYDALKAANED----------VQ 179
             N +      E + W +  P             +T  +  L A   D           +
Sbjct: 231 CVNRYQLCAGWEPVYWFTNDPDRVRSDNRRVLIPHTEKHQKLMAQGGDNRVVSYGDGAYR 290

Query: 180 MRSDWLIPICSGS------------------ERLRNKDGEKLHPTQKPEALLSRILVSST 221
           +R +    +  G                    R+  + G   HP   P  +    +   T
Sbjct: 291 LRGNAFSNVTEGRIPKNVIQRGHRCADTLELRRIARELGLPPHPAMFPTDIPEMAIRFLT 350

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           + GD+++DPF GS  SG  A++  R +I  ++  +YI
Sbjct: 351 EEGDLVVDPFSGSNKSGLAAERNNRRWIACDIILEYI 387


>gi|295400607|ref|ZP_06810585.1| DNA methylase N-4/N-6 domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294977510|gb|EFG53110.1| DNA methylase N-4/N-6 domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 665

 Score = 73.5 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           W  P    +  L  + G +    +KPE L+++++  +T   DI+LD F GSGT+ AVA K
Sbjct: 448 WEFP----NAGLHLEGGVQFTNGKKPEKLIAKLIELTTNENDIVLDFFLGSGTTAAVAHK 503

Query: 244 LRRSFIGIE 252
           ++R +IGIE
Sbjct: 504 MKRRYIGIE 512



 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 68/202 (33%), Gaps = 26/202 (12%)

Query: 18  EWKDK---IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
           EW DK   IIKGN++  L  +      SV  I+ DPPYN               D     
Sbjct: 166 EWSDKDNLIIKGNNLMALHSIKNRFAGSVKFIYIDPPYN-------------KEDDSFQY 212

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIV 130
            DKF +   +  F +  L   + +L+ +G + +         +  ++  +     L+ I 
Sbjct: 213 NDKF-NHSTWLTFMKNRLEVAKELLRDDGVIAIQIDNKEFAYLKILMDEIFGENELSTIT 271

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKA-----KGYTFNYDALKAANEDVQMRSDWL 185
            +  +     +     +  E ++  +   K      K     +   +          D+ 
Sbjct: 272 VKVKDTAGTGQDSYLFDVCEYILLYAKDKKKARESLKPAVEYFPLEEPIKNYDNHILDYG 331

Query: 186 IPICSGSERLRNKDGEKLHPTQ 207
            P+       +N    K++  +
Sbjct: 332 EPVFYKEIERKNVGKIKIYTCK 353


>gi|145640732|ref|ZP_01796315.1| type III restriction-modification system methyltransferase-like
           protein [Haemophilus influenzae R3021]
 gi|145274658|gb|EDK14521.1| type III restriction-modification system methyltransferase-like
           protein [Haemophilus influenzae 22.4-21]
          Length = 194

 Score = 73.5 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 40/57 (70%), Gaps = 2/57 (3%)

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRIASV 268
           + RI+  +TK GDIILD   GSGT+ AVA K+ R +IGIE + DYI+ +A +R+  V
Sbjct: 1   MRRIIDMTTKEGDIILDYHLGSGTTAAVAHKMNRQYIGIE-QMDYIETLAVERLKKV 56


>gi|238911510|ref|ZP_04655347.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Tennessee
           str. CDC07-0191]
          Length = 652

 Score = 73.5 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 23/136 (16%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L      +VD+I+ DPPYN   +G +Y 
Sbjct: 95  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVYP 148

Query: 60  PDHSLVDAVTDSWDKFSSFE--------------AYDAFTRAWLLACRRVLKPNGTLWVI 105
                 D         +  E              A+ +F    L   R++LK  G +++ 
Sbjct: 149 DHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFIS 208

Query: 106 GSYHNIFRIGTMLQNL 121
              +    +  M+  +
Sbjct: 209 IDDNEYANLKLMMDEI 224



 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
             A  +  +      D +     G + + +  G+ +  T KP ALL +I+  +     ++
Sbjct: 355 MYAHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPTALLKKIIKLAIDKDGVV 414

Query: 228 LDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
           LD F GSGT+      L       R+FI   + Q
Sbjct: 415 LDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 448


>gi|168237461|ref|ZP_02662519.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194735291|ref|YP_002113386.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194710793|gb|ACF90014.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197289591|gb|EDY28954.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
          Length = 652

 Score = 73.5 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 23/136 (16%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L      +VD+I+ DPPYN   +G +Y 
Sbjct: 95  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVYP 148

Query: 60  PDHSLVDAVTDSWDKFSSFE--------------AYDAFTRAWLLACRRVLKPNGTLWVI 105
                 D         +  E              A+ +F    L   R++LK  G +++ 
Sbjct: 149 DHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFIS 208

Query: 106 GSYHNIFRIGTMLQNL 121
              +    +  M+  +
Sbjct: 209 IDDNEYANLKLMMDEI 224



 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
             A  +  +      D +     G + + +  G+ +  T KP ALL +I+  +     ++
Sbjct: 355 MYAHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPTALLKKIIKLAIDKDGVV 414

Query: 228 LDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
           LD F GSGT+      L       R+FI   + Q
Sbjct: 415 LDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 448


>gi|204927143|ref|ZP_03218345.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204323808|gb|EDZ09003.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 652

 Score = 73.5 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 23/136 (16%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L      +VD+I+ DPPYN   +G +Y 
Sbjct: 95  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVYP 148

Query: 60  PDHSLVDAVTDSWDKFSSFE--------------AYDAFTRAWLLACRRVLKPNGTLWVI 105
                 D         +  E              A+ +F    L   R++LK  G +++ 
Sbjct: 149 DHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFIS 208

Query: 106 GSYHNIFRIGTMLQNL 121
              +    +  M+  +
Sbjct: 209 IDDNEYANLKLMMDEI 224



 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
             A  +  +      D +     G + + +  G+ +  T KP ALL +I+  +     ++
Sbjct: 355 MYAHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPTALLKKIIKLAIDKDGVV 414

Query: 228 LDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
           LD F GSGT+      L       R+FI   + Q
Sbjct: 415 LDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 448


>gi|168240164|ref|ZP_02665096.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194451308|ref|YP_002044388.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194409612|gb|ACF69831.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|205340405|gb|EDZ27169.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 652

 Score = 73.5 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 23/136 (16%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L      +VD+I+ DPPYN   +G +Y 
Sbjct: 95  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVYP 148

Query: 60  PDHSLVDAVTDSWDKFSSFE--------------AYDAFTRAWLLACRRVLKPNGTLWVI 105
                 D         +  E              A+ +F    L   R++LK  G +++ 
Sbjct: 149 DHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFIS 208

Query: 106 GSYHNIFRIGTMLQNL 121
              +    +  M+  +
Sbjct: 209 IDDNEYANLKLMMDEI 224



 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
             A  +  +      D +     G + + +  G+ +  T KP ALL +I+  +     ++
Sbjct: 355 MYAHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPTALLKKIIKLAIDKDGVV 414

Query: 228 LDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
           LD F GSGT+      L       R+FI   + Q
Sbjct: 415 LDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 448


>gi|261881069|ref|ZP_06007496.1| DNA methylase N-4/N-6 [Prevotella bergensis DSM 17361]
 gi|270332187|gb|EFA42973.1| DNA methylase N-4/N-6 [Prevotella bergensis DSM 17361]
          Length = 736

 Score = 73.5 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 85/281 (30%), Gaps = 49/281 (17%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I  G+ + +++ +P +S+      PP+             + +   +D  +   + + Y 
Sbjct: 459 IRLGDCVQLIKDIPDESIGFSIFSPPF-------------AELYTYSDKLEDMGNSKDYK 505

Query: 83  AFTRAW---LLACRRVLKPNGTLWVIG----------------SYHNIFRIGTMLQNLNF 123
            F  A+   +    RV+     + V                   +  +  I    +   F
Sbjct: 506 EFFMAFDFLVKELYRVMWSGRNIAVHCMDLPIQKSKEGFIGLRDFSGM--IIKSFREAGF 563

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAH---------------ETLIWASPSPKAKGYTFNY 168
              + +   K+      R +     H               + L+      +        
Sbjct: 564 IYHSRVTIWKNPVTEMQRTKALGLLHKQVKKDSAMSRVGIPDYLLIFRKDGEHAHPVHCG 623

Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
             +    +        +    + + R   +  ++ H        + R +   +  GD IL
Sbjct: 624 IDVDTWQKYASPVWMDIDYSNTLNARAGREGSDEKHVCPLQLDTIKRAITLWSNEGDTIL 683

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            PF G G+    +  L R  IG E+K+ Y + A K     +
Sbjct: 684 TPFLGIGSEVYQSILLNRKGIGFELKESYFNEAIKNCKKAE 724


>gi|168819047|ref|ZP_02831047.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205344195|gb|EDZ30959.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320084629|emb|CBY94420.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 652

 Score = 73.5 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 23/136 (16%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L      +VD+I+ DPPYN   +G +Y 
Sbjct: 95  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVYP 148

Query: 60  PDHSLVDAVTDSWDKFSSFE--------------AYDAFTRAWLLACRRVLKPNGTLWVI 105
                 D         +  E              A+ +F    L   R++LK  G +++ 
Sbjct: 149 DHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFIS 208

Query: 106 GSYHNIFRIGTMLQNL 121
              +    +  M+  +
Sbjct: 209 IDDNEYANLKLMMDEI 224



 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
             A  +  +      D +     G + + +  G+ +  T KP ALL +I+  +     ++
Sbjct: 355 MYAHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPTALLKKIIKLAIDKDGVV 414

Query: 228 LDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
           LD F GSGT+      L       R+FI   + Q
Sbjct: 415 LDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 448


>gi|16763737|ref|NP_459352.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|167992192|ref|ZP_02573290.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|197265322|ref|ZP_03165396.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|198243123|ref|YP_002214310.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|20141750|sp|P40814|T3MO_SALTY RecName: Full=Type III restriction-modification system StyLTI
           enzyme mod; Short=M.StyLTI; AltName: Full=StyLTI
           methyltransferase
 gi|16418858|gb|AAL19311.1| DNA methylase; restriction system [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|197243577|gb|EDY26197.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197937639|gb|ACH74972.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205329535|gb|EDZ16299.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261245640|emb|CBG23436.1| type III restriction-modification system enzyme (StyLTI)
           modification methylase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267992052|gb|ACY86937.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301156969|emb|CBW16452.1| type III restriction-modification system enzyme (StyLTI)
           modification methylase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312911388|dbj|BAJ35362.1| type III restriction-modification system StyLTI enzyme Mod
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
 gi|321225075|gb|EFX50136.1| Type III restriction-modification system methylation subunit
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|323128670|gb|ADX16100.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|326622056|gb|EGE28401.1| DNA methylase [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
 gi|332987305|gb|AEF06288.1| DNA methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 652

 Score = 73.5 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 23/136 (16%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L      +VD+I+ DPPYN   +G +Y 
Sbjct: 95  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVYP 148

Query: 60  PDHSLVDAVTDSWDKFSSFE--------------AYDAFTRAWLLACRRVLKPNGTLWVI 105
                 D         +  E              A+ +F    L   R++LK  G +++ 
Sbjct: 149 DHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFIS 208

Query: 106 GSYHNIFRIGTMLQNL 121
              +    +  M+  +
Sbjct: 209 IDDNEYANLKLMMDEI 224



 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
             A  +  +      D +     G + + +  G+ +  T KP ALL +I+  +     ++
Sbjct: 355 MYAHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPTALLKKIIKLAIDKDGVV 414

Query: 228 LDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
           LD F GSGT+      L       R+FI   + Q
Sbjct: 415 LDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 448


>gi|328947572|ref|YP_004364909.1| DNA methylase N-4/N-6 domain protein [Treponema succinifaciens DSM
           2489]
 gi|328447896|gb|AEB13612.1| DNA methylase N-4/N-6 domain protein [Treponema succinifaciens DSM
           2489]
          Length = 377

 Score = 73.5 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 2/108 (1%)

Query: 154 WASPSPKAKGYTFNYDALKAANEDV--QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
                P+ + Y  N      +  D      S +     +  +     D  K+HPT KP  
Sbjct: 91  QMIVFPEGEKYQINNQLNNLSGGDWLNFTTSVFSTFYTTNGKDSYAHDIRKIHPTPKPPQ 150

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           L+  I+   TK  +I+ D F G G S   A    R  IGI++ Q+YID
Sbjct: 151 LMKEIIEFFTKENEIVFDYFMGVGGSLLGAGLANRKAIGIDLNQNYID 198



 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 23/128 (17%)

Query: 1   MSQKNSLAINENQNSIFEWK---DKI-------IKGNSISVLEK-------LPAKSVDLI 43
           ++ + ++ I+ NQN I  +K    +I       I G+ I +L         L  +++ L+
Sbjct: 182 LANRKAIGIDLNQNYIDAYKLAAKEIGVKEFPTICGDCIEILSNENQMKGLLSDENISLV 241

Query: 44  FADPPYNLQLNGQLYRPDHSLVDAV-----TDSWD-KFSSFEAYDAFTRAWLLACRRVLK 97
             DPPY   ++ +    D ++   V      D  D    S E +    +  +      LK
Sbjct: 242 LIDPPYANMMSKEKTGADINVYGNVATPFTNDERDFGNLSIENFYNLLKMSVELTLPYLK 301

Query: 98  PNGTLWVI 105
            +G + V 
Sbjct: 302 KHGYIVVF 309


>gi|309799883|ref|ZP_07694088.1| type III restriction-modification system: methylase [Streptococcus
           infantis SK1302]
 gi|308116473|gb|EFO53944.1| type III restriction-modification system: methylase [Streptococcus
           infantis SK1302]
          Length = 262

 Score = 73.5 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 190 SGSERLRNKDGEKLH-PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
           +   +   K+G       +KPE L+ +I   +T+PGD +LD F GSGT+ AVA K+ R +
Sbjct: 42  NAWMKNLTKEGSVEFGNGKKPEQLIRQIFEMTTEPGDWVLDSFLGSGTTAAVATKMDRKW 101

Query: 249 IGIEMKQDYIDIATKRIASV 268
           +GIE+          R+  +
Sbjct: 102 VGIELGNHAYTHCKVRLDRI 121


>gi|257065860|ref|YP_003152116.1| DNA methylase N-4/N-6 domain-containing protein [Anaerococcus
           prevotii DSM 20548]
 gi|256797740|gb|ACV28395.1| DNA methylase N-4/N-6 domain protein [Anaerococcus prevotii DSM
           20548]
          Length = 636

 Score = 73.5 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 4/81 (4%)

Query: 191 GSERLRNKD--GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
           G  +   KD    +     KPE+LL  I+  STK  DIILD F GSGT+ AV+ K+RR +
Sbjct: 433 GKGKTAKKDIVNNEDFKYAKPESLLKSIIEISTKEDDIILDFFLGSGTTAAVSHKMRRHY 492

Query: 249 IGIEMKQDYI-DIATKRIASV 268
           IGIE + +YI D+  +R+  V
Sbjct: 493 IGIE-QMNYINDLTIERLKKV 512


>gi|322614638|gb|EFY11567.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322620157|gb|EFY17029.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322623451|gb|EFY20290.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322629251|gb|EFY26030.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322631971|gb|EFY28725.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
 gi|322637291|gb|EFY33993.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322642176|gb|EFY38785.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 531954]
 gi|322653364|gb|EFY49697.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322660487|gb|EFY56723.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322664639|gb|EFY60832.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322669308|gb|EFY65458.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322670854|gb|EFY66987.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322678908|gb|EFY74963.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|322681936|gb|EFY77961.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322688062|gb|EFY84028.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323194417|gb|EFZ79612.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323197047|gb|EFZ82189.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323203372|gb|EFZ88397.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
 gi|323206883|gb|EFZ91836.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323210347|gb|EFZ95239.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
 gi|323214589|gb|EFZ99340.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323223146|gb|EGA07489.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323224883|gb|EGA09146.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323230087|gb|EGA14207.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323233825|gb|EGA17914.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323238481|gb|EGA22539.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323244169|gb|EGA28178.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323246329|gb|EGA30312.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323251955|gb|EGA35818.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323257952|gb|EGA41631.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323261577|gb|EGA45155.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323265035|gb|EGA48534.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323272598|gb|EGA56005.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
          Length = 652

 Score = 73.5 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 23/136 (16%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L      +VD+I+ DPPYN   +G +Y 
Sbjct: 95  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVYP 148

Query: 60  PDHSLVDAVTDSWDKFSSFE--------------AYDAFTRAWLLACRRVLKPNGTLWVI 105
                 D         +  E              A+ +F    L   R++LK  G +++ 
Sbjct: 149 DHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFIS 208

Query: 106 GSYHNIFRIGTMLQNL 121
              +    +  M+  +
Sbjct: 209 IDDNEYANLKLMMDEI 224



 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
             A  +  +      D +     G + + +  G+ +  T KP ALL +I+  +     ++
Sbjct: 355 MYAHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPTALLKKIIKLAIDKDGVV 414

Query: 228 LDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
           LD F GSGT+      L       R+FI   + Q
Sbjct: 415 LDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 448


>gi|224438796|ref|ZP_03659651.1| putative RNA methylase [Helicobacter cinaedi CCUG 18818]
          Length = 260

 Score = 73.5 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 34/58 (58%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           H    P+ L  R++   +  GDI+LDPF G+GTS   A  L R FIG E+  ++ ++A
Sbjct: 20  HGATFPQKLSDRVISLYSTKGDIVLDPFLGTGTSARSALSLERDFIGFELNMEFYEVA 77



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 56/147 (38%), Gaps = 28/147 (19%)

Query: 15  SIFEWKDK--IIKGNSISVLEKLPAKSVDLIFADPPYN------LQLNGQLYRPDHSLVD 66
           S+F+ K+K  I +G+ + ++E+L   S+ L    PPY       +    + ++    ++D
Sbjct: 86  SLFD-KNKYNIKQGDCLELVEELENNSLQLTITSPPYADLIHKVVDDRTKRHKKSAFVID 144

Query: 67  AV-------TDSWD-KFSSFEAYDAFTRAWLLACRRVLKPNGT-LWVIGSYHN------- 110
                     D+ D     F++Y      ++       K NG  +WV+  Y +       
Sbjct: 145 NNATTKIYSRDTRDFGNMDFDSYMNAVLQFMQKLYTKTKSNGYNVWVVKDYRDTRNKIPY 204

Query: 111 ---IFRIGTMLQNLNFWILNDIVWRKS 134
                 I        F   + I+W ++
Sbjct: 205 VDLHSNIANAGVKAGFKYHDLIIWDQN 231


>gi|168232316|ref|ZP_02657374.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194469113|ref|ZP_03075097.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194455477|gb|EDX44316.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|205333351|gb|EDZ20115.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 652

 Score = 73.5 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 23/136 (16%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L      +VD+I+ DPPYN   +G +Y 
Sbjct: 95  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVYP 148

Query: 60  PDHSLVDAVTDSWDKFSSFE--------------AYDAFTRAWLLACRRVLKPNGTLWVI 105
                 D         +  E              A+ +F    L   R++LK  G +++ 
Sbjct: 149 DHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFIS 208

Query: 106 GSYHNIFRIGTMLQNL 121
              +    +  M+  +
Sbjct: 209 IDDNEYANLKLMMDEI 224



 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
             A  +  +      D +     G + + +  G+ +  T KP ALL +I+  +     ++
Sbjct: 355 MYAHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPTALLKKIIKLAIDKDGVV 414

Query: 228 LDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
           LD F GSGT+      L       R+FI   + Q
Sbjct: 415 LDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 448


>gi|300193|gb|AAB26533.1| StyLT1 restriction-modification system methylase subunit, StyLT1
           Mod [Salmonella typhimurium, Peptide, 651 aa]
          Length = 651

 Score = 73.5 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 23/136 (16%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L      +VD+I+ DPPYN   +G +Y 
Sbjct: 94  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYSDTVDMIYIDPPYNTGSDGFVYP 147

Query: 60  PDHSLVDAVTDSWDKFSSFE--------------AYDAFTRAWLLACRRVLKPNGTLWVI 105
                 D         +  E              A+ +F    L   R++LK  G +++ 
Sbjct: 148 DHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFIS 207

Query: 106 GSYHNIFRIGTMLQNL 121
              +    +  M+  +
Sbjct: 208 IDDNEYANLKLMMDEI 223



 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
             A  +  +      D +     G + + +  G+ +  T KP ALL +I+  +     ++
Sbjct: 354 MYAHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPTALLKKIIKLAIDKDGVV 413

Query: 228 LDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
           LD F GSGT+      L       R+FI   + Q
Sbjct: 414 LDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 447


>gi|200389670|ref|ZP_03216281.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199602115|gb|EDZ00661.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 652

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 23/136 (16%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L      +VD+I+ DPPYN   +G +Y 
Sbjct: 95  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVYP 148

Query: 60  PDHSLVDAVTDSWDKFSSFE--------------AYDAFTRAWLLACRRVLKPNGTLWVI 105
                 D         +  E              A+ +F    L   R++LK  G +++ 
Sbjct: 149 DHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFIS 208

Query: 106 GSYHNIFRIGTMLQNL 121
              +    +  M+  +
Sbjct: 209 IDDNEYANLKLMMDEI 224



 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
             A  +  +      D +     G + + +  G+ +  T KP ALL +I+  +     ++
Sbjct: 355 MYAHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPTALLKKIIKLAIDKDGVV 414

Query: 228 LDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
           LD F GSGT+      L       R+FI   + Q
Sbjct: 415 LDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 448


>gi|16759336|ref|NP_454953.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
 gi|29142892|ref|NP_806234.1| Type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|197250580|ref|YP_002145337.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|213162991|ref|ZP_03348701.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E00-7866]
 gi|213417458|ref|ZP_03350600.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
 gi|213425167|ref|ZP_03357917.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E02-1180]
 gi|289826835|ref|ZP_06545745.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-3139]
 gi|25347390|pir||AD0546 site-specific DNA-methyltransferase (adenine-specific) (EC
           2.1.1.72) - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 gi|16501627|emb|CAD08812.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29138524|gb|AAO70094.1| Type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|197214283|gb|ACH51680.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
          Length = 652

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 23/136 (16%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L      +VD+I+ DPPYN   +G +Y 
Sbjct: 95  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVYP 148

Query: 60  PDHSLVDAVTDSWDKFSSFE--------------AYDAFTRAWLLACRRVLKPNGTLWVI 105
                 D         +  E              A+ +F    L   R++LK  G +++ 
Sbjct: 149 DHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFIS 208

Query: 106 GSYHNIFRIGTMLQNL 121
              +    +  M+  +
Sbjct: 209 IDDNEYANLKLMMDEI 224



 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
             A  +  +      D +     G + + +  G+ +  T KP ALL +I+  +     ++
Sbjct: 355 MYAHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPTALLKKIIKLAIDKDGVV 414

Query: 228 LDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
           LD F GSGT+      L       R+FI   + Q
Sbjct: 415 LDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 448


>gi|194443439|ref|YP_002039595.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194402102|gb|ACF62324.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 652

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 23/136 (16%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L      +VD+I+ DPPYN   +G +Y 
Sbjct: 95  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVYP 148

Query: 60  PDHSLVDAVTDSWDKFSSFE--------------AYDAFTRAWLLACRRVLKPNGTLWVI 105
                 D         +  E              A+ +F    L   R++LK  G +++ 
Sbjct: 149 DHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFIS 208

Query: 106 GSYHNIFRIGTMLQNL 121
              +    +  M+  +
Sbjct: 209 IDDNEYANLKLMMDEI 224



 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
             A  +  +      D +     G + + +  G+ +  T KP ALL +I+  +     ++
Sbjct: 355 MYAHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPTALLKKIIKLAIDKDGVV 414

Query: 228 LDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
           LD F GSGT+      L       R+FI   + Q
Sbjct: 415 LDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 448


>gi|168261225|ref|ZP_02683198.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|205349940|gb|EDZ36571.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 652

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 23/136 (16%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L      +VD+I+ DPPYN   +G +Y 
Sbjct: 95  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVYP 148

Query: 60  PDHSLVDAVTDSWDKFSSFE--------------AYDAFTRAWLLACRRVLKPNGTLWVI 105
                 D         +  E              A+ +F    L   R++LK  G +++ 
Sbjct: 149 DHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFIS 208

Query: 106 GSYHNIFRIGTMLQNL 121
              +    +  M+  +
Sbjct: 209 IDDNEYANLKLMMDEI 224



 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
             A  +  +      D +     G + + +  G+ +  T KP ALL +I+  +     ++
Sbjct: 355 MYAHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPTALLKKIIKLAIDKDGVV 414

Query: 228 LDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
           LD F GSGT+      L       R+FI   + Q
Sbjct: 415 LDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 448


>gi|62178968|ref|YP_215385.1| DNA methylase; restriction system [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|224582195|ref|YP_002635993.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|62126601|gb|AAX64304.1| DNA methylase; restriction system [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|224466722|gb|ACN44552.1| Type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|322713424|gb|EFZ04995.1| DNA methylase; restriction system [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 652

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 23/136 (16%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L      +VD+I+ DPPYN   +G +Y 
Sbjct: 95  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVYP 148

Query: 60  PDHSLVDAVTDSWDKFSSFE--------------AYDAFTRAWLLACRRVLKPNGTLWVI 105
                 D         +  E              A+ +F    L   R++LK  G +++ 
Sbjct: 149 DHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFIS 208

Query: 106 GSYHNIFRIGTMLQNL 121
              +    +  M+  +
Sbjct: 209 IDDNEYANLKLMMDEI 224



 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
             A  +  +      D +     G + + +  G+ +  T KP ALL +I+  +     ++
Sbjct: 355 MYAHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPTALLKKIIKLAIDKDGVV 414

Query: 228 LDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
           LD F GSGT+      L       R+FI   + Q
Sbjct: 415 LDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 448


>gi|168465433|ref|ZP_02699315.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|195631678|gb|EDX50198.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
          Length = 652

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 23/136 (16%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L      +VD+I+ DPPYN   +G +Y 
Sbjct: 95  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVYP 148

Query: 60  PDHSLVDAVTDSWDKFSSFE--------------AYDAFTRAWLLACRRVLKPNGTLWVI 105
                 D         +  E              A+ +F    L   R++LK  G +++ 
Sbjct: 149 DHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFIS 208

Query: 106 GSYHNIFRIGTMLQNL 121
              +    +  M+  +
Sbjct: 209 IDDNEYANLKLMMDEI 224



 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
             A  +  +      D +     G + + +  G+ +  T KP ALL +I+  +     ++
Sbjct: 355 MYAHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPTALLKKIIKLAIDKDGVV 414

Query: 228 LDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
           LD F GSGT+      L       R+FI   + Q
Sbjct: 415 LDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 448


>gi|207855839|ref|YP_002242490.1| type III restriction-modification system enzyme modification
           methylase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|206707642|emb|CAR31926.1| type III restriction-modification system enzyme (StyLTI)
           modification methylase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 652

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 23/136 (16%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L      +VD+I+ DPPYN   +G +Y 
Sbjct: 95  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVYP 148

Query: 60  PDHSLVDAVTDSWDKFSSFE--------------AYDAFTRAWLLACRRVLKPNGTLWVI 105
                 D         +  E              A+ +F    L   R++LK  G +++ 
Sbjct: 149 DHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFIS 208

Query: 106 GSYHNIFRIGTMLQNL 121
              +    +  M+  +
Sbjct: 209 IDDNEYANLKLMMDEI 224



 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
             A  +  +      D +     G + + +  G+ +  T KP ALL +I+  +     ++
Sbjct: 355 MYAHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPTALLKKIIKLAIDKDGVV 414

Query: 228 LDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
           LD F GSGT+      L       R+FI   + Q
Sbjct: 415 LDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 448


>gi|161615469|ref|YP_001589434.1| hypothetical protein SPAB_03240 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167551843|ref|ZP_02345596.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|161364833|gb|ABX68601.1| hypothetical protein SPAB_03240 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|205323458|gb|EDZ11297.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
          Length = 652

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 23/136 (16%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L      +VD+I+ DPPYN   +G +Y 
Sbjct: 95  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVYP 148

Query: 60  PDHSLVDAVTDSWDKFSSFE--------------AYDAFTRAWLLACRRVLKPNGTLWVI 105
                 D         +  E              A+ +F    L   R++LK  G +++ 
Sbjct: 149 DHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFIS 208

Query: 106 GSYHNIFRIGTMLQNL 121
              +    +  M+  +
Sbjct: 209 IDDNEYANLKLMMDEI 224



 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
             A  +  +      D +     G + + +  G+ +  T KP ALL +I+  +     ++
Sbjct: 355 MYAHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPTALLKKIIKLAIDKDGVV 414

Query: 228 LDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
           LD F GSGT+      L       R+FI   + Q
Sbjct: 415 LDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 448


>gi|56414486|ref|YP_151561.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197363407|ref|YP_002143044.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|56128743|gb|AAV78249.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197094884|emb|CAR60419.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
          Length = 652

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 23/136 (16%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L      +VD+I+ DPPYN   +G +Y 
Sbjct: 95  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVYP 148

Query: 60  PDHSLVDAVTDSWDKFSSFE--------------AYDAFTRAWLLACRRVLKPNGTLWVI 105
                 D         +  E              A+ +F    L   R++LK  G +++ 
Sbjct: 149 DHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFIS 208

Query: 106 GSYHNIFRIGTMLQNL 121
              +    +  M+  +
Sbjct: 209 IDDNEYANLKLMMDEI 224



 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
             A  +  +      D +     G + + +  G+ +  T KP ALL +I+  +     ++
Sbjct: 355 MYAHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPTALLKKIIKLAIDKDGVV 414

Query: 228 LDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
           LD F GSGT+      L       R+FI   + Q
Sbjct: 415 LDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 448


>gi|237750645|ref|ZP_04581125.1| adenine-specific DNA methylase [Helicobacter bilis ATCC 43879]
 gi|229373735|gb|EEO24126.1| adenine-specific DNA methylase [Helicobacter bilis ATCC 43879]
          Length = 279

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 34/58 (58%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           H    P+ L  R++   +  GDI+LDPF G+GTS   A  L R FIG E+  ++ ++A
Sbjct: 39  HGATFPQKLSDRVISLYSTKGDIVLDPFLGTGTSARSALSLERDFIGFELNMEFYEVA 96



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 56/147 (38%), Gaps = 28/147 (19%)

Query: 15  SIFEWKDK--IIKGNSISVLEKLPAKSVDLIFADPPYN------LQLNGQLYRPDHSLVD 66
           S+F+ K+K  I +G+ + ++E+L   S+ L    PPY       +    + ++    ++D
Sbjct: 105 SLFD-KNKYNIKQGDCLELVEELENNSLQLTITSPPYADLIHKVVDDRTKRHKKSAFVID 163

Query: 67  AV-------TDSWD-KFSSFEAYDAFTRAWLLACRRVLKPNGT-LWVIGSYHN------- 110
                     D+ D     F++Y      ++       K NG  +WV+  Y +       
Sbjct: 164 NNATTKIYSRDTRDFGNMDFDSYMNAVLQFMQKLYTKTKSNGYNVWVVKDYRDTRNKIPY 223

Query: 111 ---IFRIGTMLQNLNFWILNDIVWRKS 134
                 I        F   + I+W ++
Sbjct: 224 VDLHSNIANAGVKAGFKYHDLIIWDQN 250


>gi|53805208|ref|YP_113069.1| DNA methyltransferase [Methylococcus capsulatus str. Bath]
 gi|53758969|gb|AAU93260.1| DNA methyltransferase [Methylococcus capsulatus str. Bath]
          Length = 1192

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 39/66 (59%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
            +K +  +    ++ R L+ +T PGD++LDP  GSGT+  VA+K  R +I  +  +  + 
Sbjct: 358 SDKRYVVETSAKVIERCLLMTTDPGDLVLDPTCGSGTTAFVAEKWGRRWITCDTSRVAVT 417

Query: 260 IATKRI 265
           +A +R+
Sbjct: 418 LAKQRL 423



 Score = 68.5 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 68/180 (37%), Gaps = 24/180 (13%)

Query: 18  EWKDKIIKGNSISVLEKL-----PAKSVDLIFADPPYNLQLNGQLY-------------- 58
           +W +++I G+S+ V+  L      A  V +I+ DPPY ++                    
Sbjct: 55  DWANRLIAGDSLLVMNSLIQKESMAGQVQMIYIDPPYGIKYGSNFQPFVNKRDVKDRRDE 114

Query: 59  --RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
               +  ++ A  D+W+      +Y  + R  LL  R +L  +G+++V  S  N+  +  
Sbjct: 115 DLTQEPEMIKAFRDTWE--LGIHSYLTYLRDRLLLARELLSESGSVFVQISDENLHHVRE 172

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
           ++  + F   N I     +              + L+W   S +   Y   Y    A  E
Sbjct: 173 VMDEI-FGSENFIAQITFSKTSGATNLFLPGTADYLLWYGKSKEQTKYRSLYKDKTAGAE 231


>gi|313145138|ref|ZP_07807331.1| adenine-specific DNA methylase [Helicobacter cinaedi CCUG 18818]
 gi|313130169|gb|EFR47786.1| adenine-specific DNA methylase [Helicobacter cinaedi CCUG 18818]
          Length = 256

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 34/58 (58%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           H    P+ L  R++   +  GDI+LDPF G+GTS   A  L R FIG E+  ++ ++A
Sbjct: 16  HGATFPQKLSDRVISLYSTKGDIVLDPFLGTGTSARSALSLERDFIGFELNMEFYEVA 73



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 56/147 (38%), Gaps = 28/147 (19%)

Query: 15  SIFEWKDK--IIKGNSISVLEKLPAKSVDLIFADPPYN------LQLNGQLYRPDHSLVD 66
           S+F+ K+K  I +G+ + ++E+L   S+ L    PPY       +    + ++    ++D
Sbjct: 82  SLFD-KNKYNIKQGDCLELVEELENNSLQLTITSPPYADLIHKVVDDRTKRHKKSAFVID 140

Query: 67  AV-------TDSWD-KFSSFEAYDAFTRAWLLACRRVLKPNGT-LWVIGSYHN------- 110
                     D+ D     F++Y      ++       K NG  +WV+  Y +       
Sbjct: 141 NNATTKIYSRDTRDFGNMDFDSYMNAVLQFMQKLYTKTKSNGYNVWVVKDYRDTRNKIPY 200

Query: 111 ---IFRIGTMLQNLNFWILNDIVWRKS 134
                 I        F   + I+W ++
Sbjct: 201 VDLHSNIANAGVKAGFKYHDLIIWDQN 227


>gi|306821022|ref|ZP_07454641.1| methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304550963|gb|EFM38935.1| methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 651

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 68/187 (36%), Gaps = 17/187 (9%)

Query: 93  RRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR----------G 142
             +     TL+  G Y+   +     +        D  WR S  + NF           G
Sbjct: 348 YPIELEGKTLYPGGDYNMYQK-----RQNGEHRRADWAWRWSENLFNFGLANGFIVLKEG 402

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           +     +             G     +  +         ++ +    + ++       + 
Sbjct: 403 KDRPRIYTKTYQKVKIVDNNGEYTIVNIDRTKPLSTIELTNNIYSNDNATKHAELLGIKN 462

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IA 261
           +    KPE L+  ++  +    DI+LD   GSGT+ AVA K+ R +IG+E + DYI  I 
Sbjct: 463 IFDYTKPEFLIRELISLAADKNDIVLDFHLGSGTTCAVAHKMGRRYIGVE-QMDYIQNIT 521

Query: 262 TKRIASV 268
            +R+  V
Sbjct: 522 VERMKKV 528



 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 59/170 (34%), Gaps = 18/170 (10%)

Query: 15  SIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
           +  E  + IIKGN++  L  L       V  I+ DPPYN                + + +
Sbjct: 168 TFDENDNLIIKGNNLIALSSLLKRYEGKVKCIYIDPPYNTG--------------SDSFN 213

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           ++   +   +  F +  L   +R+L+  G ++V    +       ++  +         +
Sbjct: 214 YNDAFNHSGWLTFMKNRLELAKRLLRETGVIFVQCDDNEQAYAKVLMDEIFGINNFVAEF 273

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPK-AKGYTFNYDALKAANEDVQM 180
            +             N H+ ++  + +    K Y   +D  K   +D   
Sbjct: 274 PRVTKRGGKSSSVIANNHDYVLMCAKNKHNVKIYAPKHDDDKFNQKDKYF 323


>gi|239931605|ref|ZP_04688558.1| DNA methylase [Streptomyces ghanaensis ATCC 14672]
          Length = 468

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 43/83 (51%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           Q    ++ R ++ +T PGD++LDP  GSGT+  VA++  R +I I+  +  I +A  R+ 
Sbjct: 3   QTNTKVIERCMLMATDPGDLVLDPTCGSGTTAYVAEQWGRRWITIDTSRVAIALARHRLM 62

Query: 267 SVQPLGNIELTVLTGKRTEPRVA 289
             +    +      GK  E  ++
Sbjct: 63  GAKYPAYLLADSPEGKAKEAEIS 85


>gi|330882713|gb|EGH16862.1| adenine specific DNA methylase [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 495

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 58/154 (37%), Gaps = 16/154 (10%)

Query: 21  DKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLNGQLY-------RPDHSLVDAVTD 70
           ++II G+++  L+ L  +    VD I+ DPPYN    G  Y       +    L + V  
Sbjct: 43  NRIIHGDNLEALKSLLPEFEGQVDCIYIDPPYNTGNEGWAYNDNVNDPKLKKWLGEVVGK 102

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN---FWILN 127
             +  S  + +       +    ++L   G ++V    +   R+  +L+ +     ++  
Sbjct: 103 EGEDLSRHDKWLCMMYPRIKLLHKLLSNTGVIFVSLDENEFCRMRLVLEEIFGESNFLAQ 162

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
            IV            ++    HE LI    +  A
Sbjct: 163 IIVQSNKRGQTY---KQIAKTHEYLICFGKTKDA 193



 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 16/106 (15%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYIDI 260
            KP AL+   +  +T+   +ILD F GSGT+      L       R FI IE  +    +
Sbjct: 348 PKPVALIEDCISLATEDDALILDSFAGSGTTAEAVLNLNAKNGGNRRFILIETLEYAETL 407

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILT 306
             +R+  V          + G  T P++   L  +      G+ L 
Sbjct: 408 TAERVRRV----------MAGYETGPKLTAGLGGQFDFFTVGEPLF 443


>gi|300742633|ref|ZP_07072654.1| adenine specific DNA methylase Mod [Rothia dentocariosa M567]
 gi|300381818|gb|EFJ78380.1| adenine specific DNA methylase Mod [Rothia dentocariosa M567]
          Length = 653

 Score = 73.1 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 61/185 (32%), Gaps = 14/185 (7%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLY-------RPDHSLVDAVT 69
           ++ II G+++  L+ L       VD ++ DPPYN    G +Y       R    L + V 
Sbjct: 43  QNMIIHGDNLEALKALLPRYEGKVDCVYIDPPYNTGNEGWVYNDAVNDPRIKKWLGEVVG 102

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
              +  S  + +       L   +R+L P G ++V    +    +  M   +        
Sbjct: 103 KEGEDLSRHDKWLCMMYPRLRLLQRLLAPTGAIFVSIDDNEAAHLKAMCDEIFGARCFVA 162

Query: 130 VWRKSNPMPNFRGRRFQNAH-ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
                         +   A  E L   S  P   G+  N     A  +D     D     
Sbjct: 163 DISWQRTYSTRNDSKGIPAEVEHLFVFSKQP---GWNPNKLERTAEMDDKYSNPDGDRTA 219

Query: 189 CSGSE 193
            + S+
Sbjct: 220 WTSSD 224



 Score = 63.1 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 61/166 (36%), Gaps = 11/166 (6%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIE 252
           DG     T KP  L+ RIL  +T    ++LD F GSGT+      L       R FI +E
Sbjct: 376 DGRVAFDTPKPTRLIERILAVATDENSLVLDSFAGSGTTAHALLNLNKADGGNRRFILVE 435

Query: 253 MKQDYIDIATKR----IASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNA 308
           +      +  +R    I   + +   ++ +   K T   +     +        Q   + 
Sbjct: 436 LGDYAGSVTAERVRRTITGYKDVREEQVVLFDHKLTLATLKKGADLVAEATTVYQEALDQ 495

Query: 309 QGNISATVCADGTLISGTELGSIHRVGAKVSGSE-TCNGWNFWYFE 353
             +  +       +   +   S+  V  ++   + +  G +F ++E
Sbjct: 496 DYSKVSRPKVVTQVSGKSATASVQVVATRIHNHDVSGTGGDFSFYE 541


>gi|13540955|ref|NP_110643.1| adenine specific DNA methylase [Thermoplasma volcanium GSS1]
 gi|14324340|dbj|BAB59268.1| modification methylase [Thermoplasma volcanium GSS1]
          Length = 337

 Score = 73.1 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 88/223 (39%), Gaps = 33/223 (14%)

Query: 18  EWKDKIIKGNSISVLEK---------LPA--KSVDLIFADPPYNLQLNGQLY-------- 58
           E+ +++I G+++  ++          LP+    +DLI+ DPP++ + N +          
Sbjct: 73  EFLNRLIYGDNLLAMQAFLAGDPETGLPSMRGKIDLIYIDPPFDSKANYRTKIHLPTADV 132

Query: 59  --RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
              P      A +D+W   +  ++Y       L+  + +L   G+++V   +H    +  
Sbjct: 133 EQMPSVIEQFAYSDTWKDGT--KSYLEMIVPRLVLMKELLSEKGSIYVHIDWHVGHYVKV 190

Query: 117 MLQNL--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA-KGYTFNYDALKA 173
           ++  +      +N+IVW+K+N  P  + + F   H+ L     +P+              
Sbjct: 191 IMDEIFGRENFVNEIVWKKTNS-PKAQSKGFGTQHDVLYIYRKTPQFIFNQIKKEPDEDY 249

Query: 174 ANEDVQMRSDWLIPICS------GSERLRNKDGEKLHPTQKPE 210
               V   +D   P  +      G +R  N+   + H  + P 
Sbjct: 250 LKSYVYDDNDGRGPYQTVALVAGGIQRSENRKIFEFHGVRAPW 292


>gi|188574834|ref|YP_001911763.1| methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188519286|gb|ACD57231.1| methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 543

 Score = 73.1 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 64/174 (36%), Gaps = 15/174 (8%)

Query: 19  WKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           W + II+G++   L  L      ++  I+ DPPYN      +Y       D   D   +F
Sbjct: 61  WDNLIIEGDNYDALRALRMTHKGAIRCIYIDPPYNTGNKDFVYN------DRFVDKTHRF 114

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKS 134
                +  F    L   + +L  +G ++V    + +FR+G ++  +         V  + 
Sbjct: 115 RH-SLWLEFMYRRLQLAKELLADDGVIFVSIDDNEVFRLGMLMDRVFGEDNFIANVIWQK 173

Query: 135 NPMPNFRGRRFQNAHETLI-WASPSPKAKGYTFNYDALK---AANEDVQMRSDW 184
              P    + F + HE ++ ++           +  A +     N D   R  W
Sbjct: 174 VYSPKNTAQHFSDDHEYILTYSRKKEDWVPNPISRSASQDSAYKNRDNDPRGVW 227


>gi|3599413|gb|AAC62718.1| site-specific DNA methyltransferase [Cenarchaeum symbiosum]
          Length = 368

 Score = 73.1 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 3/124 (2%)

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
           +        +    +      A                   R      +   S +  + +
Sbjct: 220 WAHGYDPEKYCPTCYRKFRRHATRKRIGGHEHYPIFAACNPRGKNPGNVWEISTKAHHGN 279

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
               H    PE L+SRI+  +TK GD +LDPF G GT+G V+  L+R F GI++    + 
Sbjct: 280 E---HFAVFPEDLVSRIVKFATKEGDYVLDPFAGRGTTGIVSACLKRGFTGIDLYPANVA 336

Query: 260 IATK 263
            A +
Sbjct: 337 RARR 340



 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 56/156 (35%), Gaps = 23/156 (14%)

Query: 15  SIFEWKDKIIKGNSISVLEKLPAKSV-----DLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
            I   K +I++G++  VL +L   +       L    PPY            H    +  
Sbjct: 5   PILSEKFQILQGDAREVLPRLAKNTAERGRYRLAVTSPPY----------YGHRKYGSEP 54

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV-IGSYHN-------IFRIGTMLQNL 121
               +  + + +         +C  +L  +G+L++ IG             R+   L +L
Sbjct: 55  SELGQEKTPDEFIEELAGVFKSCMDLLTDDGSLFIVIGDTRRRRHKLMVPHRLALRLVDL 114

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
            +    DI+W K N +     +    A+E ++  S 
Sbjct: 115 GYHFQEDIIWYKRNAISQSSRQNLTQAYEFVLVLSK 150


>gi|320326869|gb|EFW82902.1| adenine specific DNA methylase [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 554

 Score = 73.1 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 58/154 (37%), Gaps = 16/154 (10%)

Query: 21  DKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLNGQLY-------RPDHSLVDAVTD 70
           ++II G+++  L+ L  +    VD I+ DPPYN    G  Y       +    L + V  
Sbjct: 43  NRIIHGDNLEALKSLLPEFEGQVDCIYIDPPYNTGNEGWAYNDNVNDPKLKKWLGEVVGK 102

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN---FWILN 127
             +  S  + +       +    ++L   G ++V    +   R+  +L+ +     ++  
Sbjct: 103 EGEDLSRHDKWLCMMYPRIKLLHKLLSNTGVIFVSLDENEFCRMRLVLEEIFGESNFLAQ 162

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
            IV            ++    HE LI    +  A
Sbjct: 163 IIVQSNKRGQTY---KQIAKTHEYLICFGKTKDA 193



 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 16/106 (15%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYIDI 260
            KP AL+   +  +T+   +ILD F GSGT+      L       R FI IE  +    +
Sbjct: 348 PKPVALIEDCISLATEDDALILDSFAGSGTTAEAVLNLNAKNGGNRRFILIETLEYAETL 407

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILT 306
             +R+  V          + G  T P++   L  +      G+ L 
Sbjct: 408 TAERVRRV----------MAGYETGPKLTAGLGGQFDFFTVGEPLF 443


>gi|325678020|ref|ZP_08157659.1| DNA (cytosine-5-)-methyltransferase [Ruminococcus albus 8]
 gi|324110300|gb|EGC04477.1| DNA (cytosine-5-)-methyltransferase [Ruminococcus albus 8]
          Length = 179

 Score = 73.1 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 38/79 (48%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           I S           +LH  +KP  L+ ++L   T  G+++LD F GSG  G    K RR 
Sbjct: 88  IWSSFNVQPPDKKSRLHQAEKPVGLVEQLLEYLTFEGEMVLDQFAGSGVVGEACIKKRRG 147

Query: 248 FIGIEMKQDYIDIATKRIA 266
            + IE  +++I    KR+ 
Sbjct: 148 CVLIEKSKEFISKIIKRLE 166


>gi|308183622|ref|YP_003927749.1| type III DNA modification enzyme (methyltransferase) [Helicobacter
           pylori PeCan4]
 gi|308065807|gb|ADO07699.1| type III DNA modification enzyme (methyltransferase) [Helicobacter
           pylori PeCan4]
          Length = 448

 Score = 73.1 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 62/164 (37%), Gaps = 18/164 (10%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSL--------VDAV 68
           K  +IKG+++  L+ L    ++ + +I+ DPPYN + N  +Y  D S         +D  
Sbjct: 89  KHVLIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKSNNFIYGDDFSQSNEEILKTLDYS 148

Query: 69  TDSWD------KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL- 121
            +  D         S   + +F    LL  + +LK +G +++    +   ++  +   + 
Sbjct: 149 KEKLDYIKNLFGLKSHSGWLSFMYPRLLLAKDLLKQDGVIFISIDDNECAQLKLLCDEIF 208

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
                 +         P     + +  HE ++    +   K   
Sbjct: 209 GERNFIETFLWNKTQTPPSASNKTRKTHEFILCYQKNKDNKKMI 252



 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 199 DGEKLHPTQKPEALLSRILV---SSTKPGDIILDPFFGSGTSGAVAKKLR 245
           D  K+    KP +L+  ++    ++T  GDIILD F GSGT+     +  
Sbjct: 383 DDNKIFNFNKPVSLIKYLISICSNNTNEGDIILDFFAGSGTTAHAVLESN 432


>gi|256848295|ref|ZP_05553738.1| LOW QUALITY PROTEIN: DNA methylase [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714893|gb|EEU29871.1| LOW QUALITY PROTEIN: DNA methylase [Lactobacillus coleohominis
           101-4-CHN]
          Length = 521

 Score = 73.1 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 5/89 (5%)

Query: 184 WLIPICSGSERLRNKD---GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           W  P  +G           G+K+    K E ++  ++   T P D+++D F GS T+ AV
Sbjct: 307 WEKPEYTGQNATHTLKTLFGKKVFTYPKSEFVMRDLIQVCTNPNDLVIDFFMGSATTPAV 366

Query: 241 AKKLRRSFIGIEMKQDYID-IATKRIASV 268
           A K+ R FIGIE + DYI+ I+  R+  V
Sbjct: 367 AMKMHRRFIGIE-QMDYINTISVPRLQKV 394



 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 62/149 (41%), Gaps = 16/149 (10%)

Query: 15  SIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
           SI +  + IIKGN++  L  L      S  LI+ DPPYN +     +  +++        
Sbjct: 44  SINDNTNLIIKGNNLIALYSLLNRYKNSAKLIYLDPPYNTKSAANTFLYNNTY------- 96

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIV 130
                +  ++  F +  L   ++++K +G +      + +F +G ++  +        ++
Sbjct: 97  -----NHSSWLTFMKNRLEVSKKLVKYDGFIVAAIDSNELFYLGVLMDEIFGADNRLSVL 151

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSP 159
               NP        F +AHE LI  + S 
Sbjct: 152 AVVHNPGGRQDEEFFPSAHENLIVFAKSK 180


>gi|15828867|ref|NP_326227.1| type III restriction-modification system: methylase [Mycoplasma
           pulmonis UAB CTIP]
 gi|14089810|emb|CAC13569.1| TYPE III RESTRICTION-MODIFICATION SYSTEM: METHYLASE [Mycoplasma
           pulmonis]
          Length = 573

 Score = 73.1 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 62/148 (41%), Gaps = 12/148 (8%)

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ-MRSDWLIPICS 190
            + N   N +   ++ + E L W   +        N    +  N D      +  I    
Sbjct: 370 NRQNGGSNIKDWGWRWSKEKLDWGIKNDFIVFKNDNVYTKQYLNCDKDGNIIERKIQPLP 429

Query: 191 GSERLRNKDGEKL---------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
             E+  N    K              KPE ++  IL  +TK  D++LD   GSGT+ AVA
Sbjct: 430 IIEKYSNTQSNKHMKELFSKVPFNYSKPEGIIFEILNWTTKKNDLVLDFHLGSGTTTAVA 489

Query: 242 KKLRRSFIGIEMKQDYI-DIATKRIASV 268
            K+ R +IGIE + DYI DI  +R+  V
Sbjct: 490 HKMSRKYIGIE-QMDYIQDITIERMKKV 516



 Score = 63.9 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 61/146 (41%), Gaps = 19/146 (13%)

Query: 18  EWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           E  + IIKGN++  L  L       V LI+ DPPYN   +              + +++ 
Sbjct: 171 ENDNLIIKGNNLIALSSLLERYEGKVKLIYIDPPYNTGND--------------SFNYND 216

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--ILNDIVWR 132
             +   +  F +  L   R++LK +G ++V    + +  +  ++  + +    L+ I+W 
Sbjct: 217 SFNHSTWLTFMKNRLELARKLLKEDGVIFVQCDKNEMAYLKIIMDEIFYRENELSTIIWL 276

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPS 158
                     + F+  HE ++  + +
Sbjct: 277 NKEGGGKSDSKFFRQKHEYILCFAKN 302


>gi|58583834|ref|YP_202850.1| methyltransferase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84625637|ref|YP_453009.1| methyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|58428428|gb|AAW77465.1| methyltransferase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84369577|dbj|BAE70735.1| methyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 543

 Score = 73.1 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 64/174 (36%), Gaps = 15/174 (8%)

Query: 19  WKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           W + II+G++   L  L      ++  I+ DPPYN      +Y       D   D   +F
Sbjct: 61  WDNLIIEGDNYDALRALRMTHKGAIRCIYIDPPYNTGNKDFVYN------DRFVDKTHRF 114

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKS 134
                +  F    L   + +L  +G ++V    + +FR+G ++  +         V  + 
Sbjct: 115 RH-SLWLEFMYRRLQLAKELLADDGVIFVSIDDNEVFRLGMLMDRVFGEDNFIANVIWQK 173

Query: 135 NPMPNFRGRRFQNAHETLI-WASPSPKAKGYTFNYDALK---AANEDVQMRSDW 184
              P    + F + HE ++ ++           +  A +     N D   R  W
Sbjct: 174 VYSPKNTAQHFSDDHEYILTYSRKKEDWVPNPISRSASQDSAYKNRDNDPRGVW 227


>gi|311109937|ref|YP_003982788.1| N-4 cytosine-specific DNA methylase [Achromobacter xylosoxidans A8]
 gi|310764626|gb|ADP20073.1| N-4 cytosine-specific DNA methylase [Achromobacter xylosoxidans A8]
          Length = 442

 Score = 72.7 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 48/304 (15%), Positives = 95/304 (31%), Gaps = 75/304 (24%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           I G+S     +L  + + L+   PPY L+                  ++    + +AY  
Sbjct: 129 IWGDSTRNFPQL-GEPISLVVTSPPYLLRR---------------PRAYGNPLTEQAYVD 172

Query: 84  FTRAWLLACRRVLKPNGTLW------------VIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           F  + L      + P G++                S      +  ++  L   +++ ++W
Sbjct: 173 FICSALEPIVAQMAPGGSICLNLTNDSFVPGSPARSVAKERLVLALVDRLGLELMDTLIW 232

Query: 132 RKSN----PMPNFRGRRFQ--NAHETLIWA------------------------------ 155
              +    P+     RR Q   ++E + W                               
Sbjct: 233 HNPSKPPGPIQYASKRRVQLNTSYEPVYWFTTDSSRVYSDNRRVLQPHSDRHKQWLRQVQ 292

Query: 156 ----SPSPKAKG---YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD----GEKLH 204
                P     G   Y     +     E    ++   I       R   +D    G  +H
Sbjct: 293 EAGACPRTGVYGDGAYRLRPSSYMNETEGRIPKNVLPIGHACADTRQYRRDAAGLGLPIH 352

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
               P AL   ++   + PG ++LD F G+  +   A+ L R ++  E+  +Y+    +R
Sbjct: 353 GAMMPLALARFLIEFLSLPGQLVLDLFGGTAKTAMAAEVLDRRWMIFELFAEYLRGGAQR 412

Query: 265 IASV 268
              +
Sbjct: 413 FQRM 416


>gi|207109035|ref|ZP_03243197.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 139

 Score = 72.7 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 44/134 (32%), Gaps = 23/134 (17%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+ +SVLE       DL    PPYNL +  Q                D F +++ Y 
Sbjct: 12  LYHGD-VSVLETFEKGFYDLCITSPPYNLSIEYQGS--------------DDFRAYDDYL 56

Query: 83  AFTRAWLLACRRVLKPNGTLW--------VIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
            + + WL  C    K    L           G       I  + +   +   N I+W +S
Sbjct: 57  NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNES 116

Query: 135 NPMPNFRGRRFQNA 148
           N         +  A
Sbjct: 117 NISRRTAWGSWLQA 130


>gi|207110178|ref|ZP_03244340.1| type II adenine methyltransferase [Helicobacter pylori
          HPKX_438_CA4C1]
          Length = 87

 Score = 72.7 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 5/83 (6%)

Query: 13 QNSIFEWKDKI---IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
             IF+ +D++    +G+   VL +      DLIFADPPY L  +G L      +V    
Sbjct: 7  SRPIFKSQDQLFTLYQGDCNEVLPQFE-NQFDLIFADPPYFLSNDG-LSIQSGKIVSVNK 64

Query: 70 DSWDKFSSFEAYDAFTRAWLLAC 92
            WDK +     D F   W+   
Sbjct: 65 GDWDKENGINGIDEFNYQWINNA 87


>gi|78189355|ref|YP_379693.1| putative type II DNA modification enzyme (methyltransferase)
           [Chlorobium chlorochromatii CaD3]
 gi|78171554|gb|ABB28650.1| putative type II DNA modification enzyme (methyltransferase)
           [Chlorobium chlorochromatii CaD3]
          Length = 351

 Score = 72.7 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 60/150 (40%), Gaps = 9/150 (6%)

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSP-KAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
           +    M   +GR ++    TL             T N   +  A+E    R   +  I  
Sbjct: 198 KPFKGMLPPQGRHWRTDVITLEHWDKEGLIEWSSTGNPRKIIFADEREGKR---VQDIWE 254

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
             +         ++PT+K   LL  I+ +S+ P  I+LD F GSGT+   A  L+R +IG
Sbjct: 255 FKDPQYP-----IYPTEKNSDLLDLIITTSSNPNSIVLDCFCGSGTTLKSAHFLQRQWIG 309

Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLT 280
           I+     I+    + + ++    IE     
Sbjct: 310 IDQSPHAIEATINKFSDIKADLFIESPQYD 339



 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 78/212 (36%), Gaps = 19/212 (8%)

Query: 21  DKIIKGNSISVL------EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD---S 71
           + +I G++I+ L      ++L  K +DL++ DPP+    N  +     S +    +   +
Sbjct: 3   NLLIHGDNIAGLDYLLHQKQLKGK-IDLVYIDPPFATGGNFTITNGRASTISNSRNGDIA 61

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--ILNDI 129
           +    + + +  F R  +L  R ++    +++V   Y     +  M+  +       NDI
Sbjct: 62  YSDKLTGDDFINFLRKRILLLRELMSEKASIYVHIDYKIGHYVKIMMDEVFGIDNFRNDI 121

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASP------SPKAKGYTFNYDALKAANEDVQMRSD 183
              K NP    R     N  + +++ +       +   + Y+ N             R  
Sbjct: 122 TRIKCNPKNFTRIGYG-NIKDLILFYTKSSNPIWNEPTEKYSENDIVNLFPKITTNGRRY 180

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
             +PI +  E +  K  +       P+    R
Sbjct: 181 TTVPIHAPGETVNGKSNKPFKGMLPPQGRHWR 212


>gi|300867534|ref|ZP_07112184.1| putative type III restriction-modification system, methylation
           subunit [Oscillatoria sp. PCC 6506]
 gi|300334422|emb|CBN57354.1| putative type III restriction-modification system, methylation
           subunit [Oscillatoria sp. PCC 6506]
          Length = 872

 Score = 72.7 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 8/136 (5%)

Query: 175 NEDVQMRSDWLIPICSGSERLRNKDG--EKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
           N+    R     P+   S    +  G   +++  Q  +  + R ++ +TKPGD++LD   
Sbjct: 390 NQIHLKRYFDDYPVIPLSNYWDDLGGVSNRIYVVQTNQTAIQRCILMTTKPGDLVLDITC 449

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ----PLGNIELTVLTG--KRTEP 286
           GSGT+  VA++  R +I  +  +  I +A +R+ +       L N +  V  G   +T P
Sbjct: 450 GSGTTAYVAEQWGRRWITCDTSRVAITLAKQRLMTATFDYYQLANSQAGVSDGFKYKTVP 509

Query: 287 RVAFNLLVERGLIQPG 302
            +    +     I+ G
Sbjct: 510 HITLKSIANNPEIREG 525



 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 65/161 (40%), Gaps = 24/161 (14%)

Query: 18  EWKDKIIKGNSISVLEKLPAK-----SVDLIFADPPYNLQL----------------NGQ 56
            W ++++ G+S+ V+  L  K      V +I+ DPPY ++                   +
Sbjct: 122 NWSNRLVAGDSLLVMNSLLEKEGMAGQVQMIYFDPPYGIKYGSNFQPFVNKRDVKDGKDE 181

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
               +  ++ A  D+W+      +Y  + R  LL  R +L   G+++V  S  N+  +  
Sbjct: 182 DLTQEPEMIKAFRDTWE--LGIHSYLTYLRDRLLLARELLSETGSIFVQISDENLHHVRE 239

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
           ++  + F I   IV        +  G   Q+  + L+W   
Sbjct: 240 LMDEV-FGIDKFIVIISIQKTGSSTGAFIQSNCDYLLWYVK 279


>gi|149914819|ref|ZP_01903349.1| DNA methylase N-4/N-6 [Roseobacter sp. AzwK-3b]
 gi|149811612|gb|EDM71447.1| DNA methylase N-4/N-6 [Roseobacter sp. AzwK-3b]
          Length = 975

 Score = 72.7 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 46/87 (52%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K++  Q    ++ R L+ +T PGD++LDP  GSGT+  VA++  R +I I+  +  + +A
Sbjct: 420 KVYVVQTSTKIIERCLLMTTDPGDLVLDPTCGSGTTAYVAEQWGRRWITIDTSRVALALA 479

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRV 288
             RI   +    +      G++ E  V
Sbjct: 480 RARIMGAKYPWYLLKDSEGGQKKEAEV 506



 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 55/165 (33%), Gaps = 23/165 (13%)

Query: 19  WKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSL--------- 64
           W +++I G+ + V+  L         V  I+ DPPY ++ N        S          
Sbjct: 125 WSNRMILGDGLQVMASLAEREGLKGQVQAIYIDPPYGIKFNSNFQWSTTSRDVKDGNLDH 184

Query: 65  -------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
                  V A  D+W       +Y  + R  L+  R +L  +G+ +V     N+ R+  +
Sbjct: 185 LTREPEQVKAFRDTW--RDGIHSYLQYLRDRLVVARELLTDSGSCFVQIGDENVHRVRAL 242

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
           +  +        +      +          A+  + +       K
Sbjct: 243 MDEVFGEENFCSLIAYKTSVGLGSQGLDNTANYLVWYCKDIGSRK 287


>gi|288957068|ref|YP_003447409.1| DNA methylase N-4/N-6 [Azospirillum sp. B510]
 gi|288909376|dbj|BAI70865.1| DNA methylase N-4/N-6 [Azospirillum sp. B510]
          Length = 911

 Score = 72.7 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 40/68 (58%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K++  Q   A+  R ++ +T PGD++LDP  GSGT+  VA++  R +I I+  +  + +A
Sbjct: 405 KVYVVQTSPAVAQRCILMTTDPGDLVLDPTCGSGTTAYVAEQWGRRWITIDTSRVALALA 464

Query: 262 TKRIASVQ 269
             RI   +
Sbjct: 465 RARIMGAR 472



 Score = 66.2 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 60/168 (35%), Gaps = 24/168 (14%)

Query: 18  EWKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSL-------- 64
            W ++++ G+S++V+  L         V  I+ DPPY ++ N        S         
Sbjct: 132 NWTNRMVLGDSLAVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGNRD 191

Query: 65  --------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
                   V A  D+W       +Y  + R  L   R +L  +G+++V     NI R+  
Sbjct: 192 HITRESEQVRAFRDTW--RDGIHSYLTYLRDRLTVARDLLTDSGSIFVQIGDANIHRVRA 249

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
           +L  +     N I                 +  + ++W   + +   Y
Sbjct: 250 LLDEIFGE-ENFISEITFQKTGGQTSEFLSSVQDYVLWYGKNKEITKY 296


>gi|332884700|gb|EGK04957.1| hypothetical protein HMPREF9456_00710 [Dysgonomonas mossii DSM
           22836]
          Length = 521

 Score = 72.7 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 63/177 (35%), Gaps = 12/177 (6%)

Query: 21  DKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLNGQLY-------RPDHSLVDAVTD 70
           +KII G+++  L+ L  +    +  I+ DPPYN    G +Y       +    L + V  
Sbjct: 37  NKIIHGDNLEALKSLLPEYEGRIKCIYIDPPYNTGNEGWVYNDNVNDPKIKKWLGEVVGK 96

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--ILND 128
             +  +  + +       L    R+L  +G +++    +    +  +   +       + 
Sbjct: 97  ESEDLTRHDKWLCMMYPRLKLLHRLLADDGAIFISIDDNEFANLKLICDEIFGTNGFKSV 156

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
            +W+    + +         HE ++    S          D  K +N D   R  W+
Sbjct: 157 FIWKSRQIVDSRNQTMISKDHEYILTYGKSESFSLKGRISDKSKYSNPDNDERGAWM 213



 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 67/223 (30%), Gaps = 29/223 (13%)

Query: 52  QLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
            L G++            +     S+     A           +L P+  +         
Sbjct: 190 SLKGRISDKSKYSNPDNDERGAWMSNSILGLANKEQRPNLHYSILDPDTGIEYDCPPDTG 249

Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
           +R                   K N  P  +    + A E   +++  P+  GYT N    
Sbjct: 250 WRYSRETMEQKIKEKRIFFPTKKNGRPREKKYLNELASEFTGFSTILPEDVGYTMN---- 305

Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
                              G+  LR    E      K   L+  ++  +T    I+LD F
Sbjct: 306 -------------------GTRILREIVPESKFNFPKSFELVKTLIEQATDKDSIVLDSF 346

Query: 232 FGSGTSGAVAKKL------RRSFIGIEMKQDYIDIATKRIASV 268
            GSGT+      L       R FI +EM+    DI  +R+  V
Sbjct: 347 AGSGTTAHAVLNLNKQDGGNRKFILVEMEDYADDITAERVKRV 389


>gi|145631556|ref|ZP_01787323.1| putative type III restriction-modification system methyltransferase
           [Haemophilus influenzae R3021]
 gi|144982825|gb|EDJ90347.1| putative type III restriction-modification system methyltransferase
           [Haemophilus influenzae R3021]
          Length = 628

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 76/204 (37%), Gaps = 25/204 (12%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLY 58
                    ENQNS    ++ +I+G+++ VL+ L       + +I+ DPPYN   +G +Y
Sbjct: 83  EDIEHNQKPENQNS----ENILIQGDNLEVLKHLKHAYKNQIKMIYIDPPYNTASDGFVY 138

Query: 59  RPDHSLV---------------DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW 103
           + D                     +  +  K +S  A+  F    L   R +L+ +G ++
Sbjct: 139 QDDRKFTPQQLVELGMDLEEAERVLEFTAKKSNSHSAWLTFMYPRLYIARELLRDDGVIF 198

Query: 104 VIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
           +    +   ++  +   +      + + VW+      N         HE +   S +   
Sbjct: 199 ISIDDNEQAQLKILCDEVFGEENFVAEFVWKSRQNKDNRNITGASIDHEYIFCYSKTNLY 258

Query: 162 KG-YTFNYDALKAANEDVQMRSDW 184
           K       D  + +N D   R +W
Sbjct: 259 KALRGAERDTSQYSNPDNDPRGNW 282



 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 67/194 (34%), Gaps = 32/194 (16%)

Query: 106 GSYHNIFRIGTMLQNLNFWILNDIV---WRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
           G++ +   +G + ++       D++      +   P    R  +N  + LI       A+
Sbjct: 280 GNWASGNMVGLLPEDQRPNCHYDLINPKTGINYGKPKLGWRYDKNTMQRLIDEDRILWAE 339

Query: 163 GYTFNYDALKAANEDVQMRSDWL------IPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
             T         NE  +  + +       I   +G+  L +    K     K   L+ ++
Sbjct: 340 LPTGRPRRKVFFNELTEQYTGFSSILGKDIYTRNGTAELEDLFEAKYFDFPKSIQLIKQL 399

Query: 217 L-VSSTKPGDIILDPFFGSGTSGAVAKKL--------RRSFIGI-------EMKQDY--- 257
           +  +   P D+ILD F GSGT+     +L         R FI +       E  + Y   
Sbjct: 400 IEQAILNPNDLILDFFAGSGTTAHAVMQLNAEDEDNGNRKFICVQLPEPTDEKSEAYKAG 459

Query: 258 ----IDIATKRIAS 267
                DI   RI  
Sbjct: 460 YKTIFDITKARIEK 473


>gi|28198738|ref|NP_779052.1| methyltransferase, type III restriction-modification system
           [Xylella fastidiosa Temecula1]
 gi|182681431|ref|YP_001829591.1| site-specific DNA-methyltransferase (adenine-specific) [Xylella
           fastidiosa M23]
 gi|28056829|gb|AAO28701.1| methyltransferase, type III restriction-modification system
           [Xylella fastidiosa Temecula1]
 gi|182631541|gb|ACB92317.1| Site-specific DNA-methyltransferase (adenine-specific) [Xylella
           fastidiosa M23]
 gi|307579882|gb|ADN63851.1| site-specific DNA-methyltransferase (adenine-specific) [Xylella
           fastidiosa subsp. fastidiosa GB514]
          Length = 542

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 68/197 (34%), Gaps = 11/197 (5%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
            +    W + II+G++   L  L      ++  I+ DPPYN      +Y       D   
Sbjct: 55  SHGAAPWPNLIIEGDNFDALRALRMTHRGAIRCIYIDPPYNTGNRDFVYN------DCFI 108

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILND 128
           D   ++     +  F    L   + +L  +G ++V    + +FR+G ++  +        
Sbjct: 109 DKTHRYRH-SLWLEFIYRRLQLAKELLADDGVIFVSIDDNELFRLGMLMDRVFGHDHFIA 167

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
            V  +    P    + F + HE ++  + +           +           +D   P 
Sbjct: 168 NVIWQKIFSPKNTAQHFSDDHEYILVFARNRTLWRSNPLPRSETQDKAYKNPDNDPRGPW 227

Query: 189 CSGSERLRNKDGEKLHP 205
            SG    RN      +P
Sbjct: 228 TSGDLSARNFYSLGTYP 244



 Score = 59.2 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 6/60 (10%)

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGI 251
           +    +  T KP  L+ RIL  ++ PGD +LD F GSGT G    KL       R FI I
Sbjct: 329 ESSSDVFSTPKPVQLMERILRIASNPGDTVLDFFAGSGTFGQAVAKLNAEDGGHRKFILI 388


>gi|153873450|ref|ZP_02002029.1| DNA methylase N-4/N-6 [Beggiatoa sp. PS]
 gi|152070084|gb|EDN67971.1| DNA methylase N-4/N-6 [Beggiatoa sp. PS]
          Length = 686

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 58/140 (41%), Gaps = 2/140 (1%)

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
           +  + M N+  +     H    +++     +    +       N    +      P  + 
Sbjct: 125 KMDSGMFNYEFKGITYKHPKNGFSTKWEGMERLEKSSRLQPEGNRLNFIMYAEENPASTL 184

Query: 192 SERLRNKDG--EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           +    +  G   K +  Q    ++ R L+ +T PGD++LDP  GSGT+  VA++  R +I
Sbjct: 185 TAPWNDTVGADNKNYVVQTNTKVIQRCLLMTTDPGDLVLDPTCGSGTTAYVAEQWGRRWI 244

Query: 250 GIEMKQDYIDIATKRIASVQ 269
             +  +  + +A  R+ + +
Sbjct: 245 TCDTSRVALSLARTRLMTAK 264


>gi|330895400|gb|EGH27738.1| type III restriction-modification system methyltransferase,
           putative [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 402

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
             +++  T KPE LL RI+  ++ PG++++D F GSGT+ AVA K+ R ++  E     +
Sbjct: 309 PDKEVFDTPKPELLLERIIHIASNPGELVVDIFGGSGTTAAVAHKMGRRWVVAERNAQTV 368

Query: 259 -DIATKRIASV 268
            D    R+  V
Sbjct: 369 LDFMVPRLTHV 379



 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 64/181 (35%), Gaps = 24/181 (13%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLP------AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
           + I    + +  G+ + VLE L          + L++ DPP+N Q++ + YR        
Sbjct: 45  HPIDSQTNVLAIGDGLDVLEALRQRTSVLDGGIRLVYIDPPFNTQVDFRQYR-------- 96

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
                    +   + +  R  L+A R +L  + ++WV      + R   ++  +      
Sbjct: 97  ------DTMNRSMWLSMMRDRLIAIRPLLANDASIWVHLDDSEVHRARAVMDEVFGETAF 150

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY----DALKAANEDVQMRSD 183
                            F + H+T++  +PS   K  T       D     N+D   R  
Sbjct: 151 VTSVIWQKKTTRDSRAAFSSNHDTILVYAPSGPKKWKTTRNLLVKDNAHLLNKDDDPRGP 210

Query: 184 W 184
           W
Sbjct: 211 W 211


>gi|296491995|ref|YP_003662464.1| putative DNA methyltransferase [Xenorhabdus nematophila ATCC 19061]
 gi|289176884|emb|CBJ93055.1| putative DNA methyltransferase [Xenorhabdus nematophila ATCC 19061]
          Length = 434

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 87/277 (31%), Gaps = 71/277 (25%)

Query: 37  AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
            + V L    PP+ L       R      +     W           F    L    + L
Sbjct: 144 DEPVHLCVTSPPFPL-------RIQRGYGNVDEAKW---------VDFITQALEPIVKNL 187

Query: 97  KPNGT--------LWVIGSYHNIFRIGTML----QNLNFWILNDIVW----RKSNPMPNF 140
            P+G+        ++   S      +  M+      L   +++   W    +  +P    
Sbjct: 188 VPSGSVVLNVSNDIFEAKSPSRSLYVERMVLALHDRLGLSLMDRWPWINLSKPPSPTQWA 247

Query: 141 RGRRFQ--NAHETLIWASPSPKA---------KGYTFNYDALKAANED----------VQ 179
              R+Q  +  E + W +  P             +T  +  L A   D           +
Sbjct: 248 CVNRYQLCSGWEPVYWFTNDPDRVRSDNRRVLIPHTEKHQKLMAQGGDSRVVSYGDGAYR 307

Query: 180 MRSDWLIPICSGS------------------ERLRNKDGEKLHPTQKPEALLSRILVSST 221
           +R +    +  G                    R+  + G   HP   P  +    +   T
Sbjct: 308 LRGNAFSNVTEGRIPKNVIQRGHRCADTLELRRIAKELGLPPHPAMFPTDIPEMAIRFLT 367

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           + GD+I+DPF GS  SG  A++  R +I  ++  +YI
Sbjct: 368 EEGDLIVDPFSGSNKSGLAAERNNRRWIACDIILEYI 404


>gi|197294693|ref|YP_001799234.1| Putative methylase [Candidatus Phytoplasma australiense]
 gi|171854020|emb|CAM11989.1| Putative methylase [Candidatus Phytoplasma australiense]
          Length = 182

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 2/101 (1%)

Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVS--STKPGDII 227
           A       +    D  I      +  ++     +HPTQKP+ L ++++ S         I
Sbjct: 82  AGFKEQFFLCKTCDCKIFRSKELKNHQSPHQTIIHPTQKPQMLTNKLIDSAIMENQKGNI 141

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           L PF GS +   VAKK   ++IGIE+  DY+ +  + +  +
Sbjct: 142 LIPFAGSDSECLVAKKKNLNYIGIEINPDYVMLINEALKKI 182


>gi|320353483|ref|YP_004194822.1| adenine-specific DNA-methyltransferase [Desulfobulbus propionicus
           DSM 2032]
 gi|320121985|gb|ADW17531.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfobulbus propionicus DSM 2032]
          Length = 529

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 68/212 (32%), Gaps = 11/212 (5%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLNGQLYRP 60
           K   A N + + +    + II G+++  L+ L  +    +  I+ DPPYN      +Y  
Sbjct: 25  KRHFAFNGDADGVNSTGNTIIHGDNLEALKALLPEYEGRIRCIYIDPPYNTGNESWVYND 84

Query: 61  D-------HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
           +         L   V    +     + +       L   RR+L  +G++W+    +    
Sbjct: 85  NVNEPQIVKWLGQVVGKDGEDLCRHDKWLCMMYPRLQLLRRLLAEDGSIWISIDDNEQAH 144

Query: 114 IGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
           +  ++  +         V  +    P    R F   H+ ++  + +              
Sbjct: 145 LRAVMDEIFGQRNFITTVIWQKVYSPKNSARHFSEDHDFIMVYAKNASQWVPNPMPRTEA 204

Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
                     D   P  +     RN  GE  +
Sbjct: 205 QNKAYKNYDHDPRGPWKASDLSARNYYGEGTY 236



 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/110 (30%), Positives = 47/110 (42%), Gaps = 11/110 (10%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS------FIGIEMKQD 256
           +  T KP  L+ RIL  +T    IILD F GSGT+G     L R       FI IEM  D
Sbjct: 327 VFVTPKPTRLIDRILHIATDKDAIILDSFAGSGTTGHAVLNLNRQDGGNRTFILIEM-MD 385

Query: 257 YIDIA----TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPG 302
           Y +       KR+ +    G+  +    G  T   +   +  + G + P 
Sbjct: 386 YAETITAERIKRVINGYGEGSKAVAGTGGGFTYCTLGERVFDDEGFLNPN 435


>gi|4584114|emb|CAB40611.1| type III restriction-modification system enzyme Mod [Bacillus
           cereus ATCC 10987]
          Length = 669

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 21/137 (15%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLY 58
              +   ++EN+ S    K+    G+++ VL  L      S+D+I+ DPPYN   +G +Y
Sbjct: 92  PNNDHNNLDENKKS----KNLFFTGDNLEVLRHLQNNYNNSIDMIYIDPPYNTGDDGFIY 147

Query: 59  RPDHSLVDAVTDSWDKFSSFE--------------AYDAFTRAWLLACRRVLKPNGTLWV 104
                  D         +  E              A+  F    L   +R+LK NG + +
Sbjct: 148 PDKFEFDDETLKDMFGMNDKEFERLKSIQGTATHSAWLTFMYPRLWLAKRLLKENGVILL 207

Query: 105 IGSYHNIFRIGTMLQNL 121
               +    +  +L  +
Sbjct: 208 SIDDNEQANLTLLLNEI 224



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 68/212 (32%), Gaps = 31/212 (14%)

Query: 50  NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
           N+ L  +L+   +S         D +  F  +D F R        +  P+GT+     Y 
Sbjct: 262 NINLVPKLFESYNSEYVKRYKEEDAYGRF-YWDTFKRKSGKQYYPIEAPDGTILQ---YD 317

Query: 110 NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
                 + L++   +          N    F   R                A  +  ++ 
Sbjct: 318 EQGNEISWLRSEGRF-----YQDLENGEVKFVKNR----------------AGEWNVHFK 356

Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
                 +  +          SGS+ + N   +++    KP  L+   +   T    IILD
Sbjct: 357 QRIPNGKKPRSILSDKGTTASGSQEILNYFSKEVFSNPKPTTLIEYFIEVFTDDKAIILD 416

Query: 230 PFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
            F GS T+     KL       R FI  ++ +
Sbjct: 417 FFAGSATTADAVMKLNAAQQCDRKFILAQLNE 448


>gi|300908061|ref|ZP_07125535.1| type III restriction/modification enzyme [Lactobacillus reuteri
           SD2112]
 gi|183398031|gb|ACC62481.1| adenine specific DNA methylase Mod [Lactobacillus reuteri]
 gi|300894793|gb|EFK88141.1| type III restriction/modification enzyme [Lactobacillus reuteri
           SD2112]
          Length = 668

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 51/125 (40%), Gaps = 3/125 (2%)

Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR---SDWLIPICSGSERLRNKDGEKL 203
           N +        +   KG  +    L   N     +       I +       R + G +L
Sbjct: 416 NDYRFFTGPKKAGATKGKYYQGVPLDVKNGKTSQKLLPIPGFIDMAGSFGNDRLEGGVEL 475

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
              +KPE LL  I+   +   D ++D F GSG++ A A K+ R FI IE   + I    K
Sbjct: 476 RNGKKPEKLLKNIIKYFSNKNDYVMDFFAGSGSTLATAMKMSRKFIAIEQINEQIIKINK 535

Query: 264 RIASV 268
           R+ +V
Sbjct: 536 RLNNV 540



 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 58/160 (36%), Gaps = 23/160 (14%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + +IKGN++  L  +    A  + LI+ DPPYN   +   Y              D+F S
Sbjct: 181 NLVIKGNNLIALHSIAKKYAGKIKLIYLDPPYNTGSDSFKY-------------NDRF-S 226

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
              +  F ++ L   + ++  NG + +         +  +  ++      D        +
Sbjct: 227 HATWLTFMKSRLEIAKTLMSDNGVIAIQLDDSEGPYLKVLTDSI---FGRDNELFTQYVL 283

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
             +  +  ++  +   +     +   Y  N +A    N+D
Sbjct: 284 VRYANKTLKSDMD---YHKQIEQIHYYKKNSNAEVKPNKD 320


>gi|320193607|gb|EFW68242.1| modification methylase, putative [Escherichia coli WV_060327]
          Length = 923

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 56/314 (17%), Positives = 90/314 (28%), Gaps = 78/314 (24%)

Query: 33  EKLPAKSVDLIFADPPYNLQLNGQLYRP-------------DHSLVDAVTDSWDKFSSFE 79
           EKLP    DL+   PPY    +  LY                H  + +      + S FE
Sbjct: 267 EKLPDGIADLVVTSPPYGNATDYHLYHRFRLLWLGFDPIALGHVEIGSHLKHQRESSGFE 326

Query: 80  AYDAFTRAWLLACRRVLKP--------NGTLWVIGSYHNIFRIGTMLQNLN---FWILND 128
           +Y A   A L    R LKP          +++   +Y     +     +L      I++ 
Sbjct: 327 SYLADMEAALATMHRALKPGRYAALVIGDSVYDKKTYDPAEALYERADSLGFEACTIVDR 386

Query: 129 IVWRKSNPMPNFRGRRFQNAH---------ETLIWASPSPKAKG---------------- 163
            +        +  GRR  + H          TLI  SP+P                    
Sbjct: 387 AIHAVKRSFSH-AGRRATSEHILVLRRKVAPTLIQISPAPYKLWPYEAELRLRELGLKLG 445

Query: 164 -------------------YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
                              Y     +     E   +   W   + +G         +  +
Sbjct: 446 DADPSLDIRVPSLEEDRSMYKRAAFSHSVQLEGGYVEPTWQAVLENGEAWRSTTRKDPKY 505

Query: 205 PT--------QKPEALLSRILVSSTK-PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
            T        +    L   +L  S   PG  +LD F GSGT+            G +M  
Sbjct: 506 VTHGIHSYKGKFYPQLAKSLLNISGFGPGATVLDLFCGSGTTLLEGYLNGFRTFGCDMNP 565

Query: 256 DYIDIATKRIASVQ 269
               I+  ++  ++
Sbjct: 566 LAAKISRAKLGVLE 579



 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 189 CSGSERLRNKDGEKLHP--TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            S +E      G  +HP   +    L   ++   +  G+ +LDPF GSGT+   A KL R
Sbjct: 41  WSFTEVDTRLPGHDIHPYPAKFIPQLPHGLISRLSGRGETVLDPFGGSGTTALEAVKLGR 100

Query: 247 SFIGIEMKQ 255
             I I+   
Sbjct: 101 KAISIDANP 109



 Score = 40.7 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 4/35 (11%)

Query: 23  IIKGNSI---SVLEK-LPAKSVDLIFADPPYNLQL 53
           I +G++    + ++  L + SVDL+   PPY   L
Sbjct: 716 ITEGDNRKPDTFMKLGLESGSVDLVLTSPPYGTAL 750


>gi|315657341|ref|ZP_07910223.1| adenine-specific DNA modification methyltransferase [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
 gi|315491813|gb|EFU81422.1| adenine-specific DNA modification methyltransferase [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
          Length = 394

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 5/138 (3%)

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNA-----HETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
            +       + P   +   R+  A     +  L +      A  +   Y  ++  +E   
Sbjct: 221 WICAHPHPNAKPGLKYHAWRWSRAKVERDYANLEFQVRGRGAHRHLKIYTKIRNFHETAL 280

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
                     SG   L+      L  T KP  LL  ++ ++T PGD +LD F GSGT+G 
Sbjct: 281 KDLVIGPSTISGQRELQRLGLGGLFETPKPTKLLQVLIEAATSPGDTVLDFFAGSGTTGQ 340

Query: 240 VAKKLRRSFIGIEMKQDY 257
            A    R F+ I++++ +
Sbjct: 341 AAHTAGRRFVLIQLEETF 358



 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 47/134 (35%), Gaps = 18/134 (13%)

Query: 23  IIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +++ ++   L  L    + V +I+ DPPYN                  T ++    + + 
Sbjct: 10  LLRADAACGLRALHQAGQRVQMIYIDPPYNTG---------------NTFAYHDRRAKDE 54

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNPMPN 139
           + A     L   R +L P+G +++   ++ +  +   +        L       SN    
Sbjct: 55  WLAMMHPLLATAREILTPDGLIFISIDFNQLCELKLEMDRTFGTENLIGNFVWVSNLKGR 114

Query: 140 FRGRRFQNAHETLI 153
             G      HE ++
Sbjct: 115 QLGSGPAGTHEYIL 128


>gi|213580225|ref|ZP_03362051.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
          Length = 282

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 23/136 (16%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L      +VD+I+ DPPYN   +G +Y 
Sbjct: 47  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVYP 100

Query: 60  PDHSLVDAVTDSWDKFSSFE--------------AYDAFTRAWLLACRRVLKPNGTLWVI 105
                 D         +  E              A+ +F    L   R++LK  G +++ 
Sbjct: 101 DHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFIS 160

Query: 106 GSYHNIFRIGTMLQNL 121
              +    +  M+  +
Sbjct: 161 IDDNEYANLKLMMDEI 176


>gi|213619415|ref|ZP_03373241.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-2068]
          Length = 339

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 23/136 (16%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
           + N+LA N+N +++F      + G+++ VL  L      +VD+I+ DPPYN   +G +Y 
Sbjct: 2   EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVYP 55

Query: 60  PDHSLVDAVTDSWDKFSSFE--------------AYDAFTRAWLLACRRVLKPNGTLWVI 105
                 D         +  E              A+ +F    L   R++LK  G +++ 
Sbjct: 56  DHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFIS 115

Query: 106 GSYHNIFRIGTMLQNL 121
              +    +  M+  +
Sbjct: 116 IDDNEYANLKLMMDEI 131



 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 33/78 (42%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
             A  +  +      D +     G + + +  G+ +  T KP ALL +I+  +     ++
Sbjct: 262 MYAHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPTALLKKIIKLAIDKDGVV 321

Query: 228 LDPFFGSGTSGAVAKKLR 245
           LD F GSGT+      L 
Sbjct: 322 LDFFAGSGTTAHAVMALN 339


>gi|42780094|ref|NP_977341.1| type III restriction-modification system enzyme, M subunit
           [Bacillus cereus ATCC 10987]
 gi|42736012|gb|AAS39949.1| type III restriction-modification system enzyme, M subunit
           [Bacillus cereus ATCC 10987]
          Length = 669

 Score = 71.9 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 21/137 (15%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLY 58
              +   ++EN+ S    K+    G+++ VL  L      S+D+I+ DPPYN   +G +Y
Sbjct: 92  PNNDHNNLDENKKS----KNLFFTGDNLEVLRHLQNNYNNSIDMIYIDPPYNTGDDGFIY 147

Query: 59  RPDHSLVDAVTDSWDKFSSFE--------------AYDAFTRAWLLACRRVLKPNGTLWV 104
                  D         +  E              A+  F    L   +R+LK NG + +
Sbjct: 148 PDKFEFDDETLKDMFGMNDKEFERLKSIQGTATHSAWLTFMYPRLWLAKRLLKENGVILL 207

Query: 105 IGSYHNIFRIGTMLQNL 121
               +    +  +L  +
Sbjct: 208 SIDDNEQANLTLLLNEI 224



 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 68/212 (32%), Gaps = 31/212 (14%)

Query: 50  NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
           N+ L  +L+   +S         D +  F  +D F R        +  P+GT+     Y 
Sbjct: 262 NINLVPKLFESYNSEYVKRYKEEDAYGRF-YWDTFKRKSGKQYYPIEAPDGTILQ---YD 317

Query: 110 NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
                 + L++   +          N    F   R                A  +  ++ 
Sbjct: 318 EQGNEISWLRSEGRF-----YQDLENGEVKFVKNR----------------AGEWNVHFK 356

Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
                 +  +          SGS+ + N   +++    KP  L+   +   T    IILD
Sbjct: 357 QRIPNGKKPRSILSDKGTTASGSQEILNYFSKEVFSNPKPTTLIEYFIEVFTDDKAIILD 416

Query: 230 PFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
            F GS T+     KL       R FI  ++ +
Sbjct: 417 FFAGSATTADAVMKLNAAQQCDRKFILAQLNE 448


>gi|119356767|ref|YP_911411.1| DNA methylase N-4/N-6 domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354116|gb|ABL64987.1| DNA methylase N-4/N-6 domain protein [Chlorobium phaeobacteroides
           DSM 266]
          Length = 884

 Score = 71.9 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 5/121 (4%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD-----GEKLHPTQ 207
            W +     K  +     +   N    +R     P+ S +    +        EK +  Q
Sbjct: 378 FWKTNYNGFKRLSELGRLIGVKNTLAYVRYAEDFPVVSLNNFWSDTQQSTYAAEKNYIVQ 437

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
               ++ R ++ +T PGD++LDP  GSGT+  VA++  R +I I+  +  ++IA  R  +
Sbjct: 438 TYSKVIHRCILMTTDPGDLVLDPTCGSGTTAYVAEQWGRRWITIDTSRIALNIAKTRFMT 497

Query: 268 V 268
            
Sbjct: 498 A 498



 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 69/185 (37%), Gaps = 24/185 (12%)

Query: 19  WKDKIIKGNSISVLEKL-----PAKSVDLIFADPPYNLQLNGQLYRPDHS---------- 63
           W +++I+G+S  V+  L      A  V  I+ DPPY ++ N       +           
Sbjct: 137 WTNRLIQGDSHLVMASLLEREGMAGQVQTIYIDPPYGIKYNSNWQMKLNDRNVKDGSDEH 196

Query: 64  ------LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
                 ++ A  D+W+      +Y ++ R  +L  R +L  +G+ +V  S  N+  +  +
Sbjct: 197 LTGEPEMIKAFRDTWE--LGIHSYLSYLRDRMLIARELLTESGSCFVQISDENVHLVRCL 254

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
           +  + F   N +            G    N ++ +IW   S  +  +   Y      + +
Sbjct: 255 MDEV-FGSENFVSTISFIKTAGKMGGLLDNVNDFIIWYGKSKSSIKFRQLYTDRTLKSLN 313

Query: 178 VQMRS 182
                
Sbjct: 314 QGYNW 318


>gi|303245983|ref|ZP_07332265.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfovibrio fructosovorans JJ]
 gi|302492766|gb|EFL52634.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfovibrio fructosovorans JJ]
          Length = 618

 Score = 71.9 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 55/143 (38%), Gaps = 10/143 (6%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPD------HSLVDAVTDS 71
           + II G+++  L+ L       VD IF DPPYN       Y  +         + +   +
Sbjct: 39  NLIIHGDNLHALKSLLPRYAGKVDCIFIDPPYNTGKENWCYNDNVNSPIMREWLSSNPVN 98

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIV 130
            +     + + A     L     +L  +G++WV    + I R+ +ML  +     L  I+
Sbjct: 99  REDMLRHDKWCAMMWPRLKLLHELLADDGSIWVSCDDNEIHRLRSMLDEIFGDENLVSIL 158

Query: 131 WRKSNPMPNFRGRRFQNAHETLI 153
             ++N             HE +I
Sbjct: 159 VVENNRKGRNDKENIALTHEYMI 181



 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 80/241 (33%), Gaps = 21/241 (8%)

Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
           Y N       L+ ++   +  +  R  N    +R  + +  +   +       +  +  +
Sbjct: 238 YFNKIDNKLSLERISQHDIEILPLRGDNSDGRWRWGKERVKNNLDLLVPRQGTSGRFDID 297

Query: 168 YDAL------KAANEDVQMRSDWLIPICSGSERLR-NKDGEKLHP---TQKPEALLSRIL 217
           Y             +  + +S W  P  S        KD    +P   + KP   + +++
Sbjct: 298 YKVYLTTFDDSENEKRKKPKSVWFGPKFSTDHATNLIKDIFGNNPLSHSPKPLEQIVQVI 357

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRS------FIGIEMKQDYIDIATKRIASVQP- 270
             +     IILD F GSGT+     +  R       FI +E +     +  +R+  +   
Sbjct: 358 QLAVGKNGIILDSFAGSGTTAHAVLEANRRDDGNRNFILVECEDYADALTAERVRRIIRG 417

Query: 271 ---LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTE 327
               G ++  +L  K    +      + R  I   + L +   N       DG LI   E
Sbjct: 418 YSFAGKVKEEILCEKINWTKFQKASELLR-TINGLEALHSPNFNRIKKEIKDGELIVYGE 476

Query: 328 L 328
            
Sbjct: 477 K 477


>gi|145629607|ref|ZP_01785404.1| putative type III restriction-modification system methyltransferase
           [Haemophilus influenzae 22.1-21]
 gi|144978118|gb|EDJ87891.1| putative type III restriction-modification system methyltransferase
           [Haemophilus influenzae 22.1-21]
          Length = 351

 Score = 71.9 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 76/204 (37%), Gaps = 25/204 (12%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLY 58
                    ENQNS    ++ +I+G+++ VL+ L       + +I+ DPPYN   +G +Y
Sbjct: 83  EDIEHNQKPENQNS----ENVLIQGDNLEVLKHLKHAYKNQIKMIYIDPPYNTGSDGFVY 138

Query: 59  RPDHSLV---------------DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW 103
           + D                     +  +  K +S  A+  F    L   R +L+ +G ++
Sbjct: 139 QDDRKFTPQQLVELGMDLEEAERVLEFTAKKSNSHSAWLTFMYPRLYIARELLRDDGVIF 198

Query: 104 VIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
           +    +   ++  +   +      + + VW+      N         HE +   S +   
Sbjct: 199 ISIDDNEQAQLKILCDEVFGEENFVAEFVWKSRQNKDNRNITGASIDHEYIFCYSKTNLY 258

Query: 162 KG-YTFNYDALKAANEDVQMRSDW 184
           K       D  + +N D   R +W
Sbjct: 259 KALRGAERDTSQYSNPDNDPRGNW 282


>gi|298346155|ref|YP_003718842.1| adenine-specific DNA-methyltransferase [Mobiluncus curtisii ATCC
           43063]
 gi|298236216|gb|ADI67348.1| site-specific DNA-methyltransferase (adenine-specific) [Mobiluncus
           curtisii ATCC 43063]
          Length = 394

 Score = 71.9 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 5/138 (3%)

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNA-----HETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
            +       + P   +   R+  A     +  L +         +   Y  ++  +E   
Sbjct: 221 WICAHPHPNAKPGLKYHAWRWSRAKVERDYADLEFQVRGRGEHRHLKIYTKIRNFHETAL 280

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
                     SG   L+      L  T KP  LL  ++ ++T PGD +LD F GSGT+G 
Sbjct: 281 KDLVIGPSTISGQRELQRLGLGGLFETPKPTKLLQVLIEAATSPGDTVLDFFAGSGTTGQ 340

Query: 240 VAKKLRRSFIGIEMKQDY 257
            A    R F+ I++++ +
Sbjct: 341 AAHTTGRRFVLIQLEETF 358



 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 18/134 (13%)

Query: 23  IIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +++ ++ + L  L    + V +I+ DPPYN                  T ++    + + 
Sbjct: 10  LLRADAATGLRALHQAGQRVQMIYIDPPYNTG---------------NTFAYHDRRAKDE 54

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNPMPN 139
           + A     L   R +L P+G +++   ++ +  +   +        L       SN    
Sbjct: 55  WLAMMHPLLATAREILTPDGLIFISIDFNQLCELKLEMDRTFGTENLIGNFVWVSNLKGR 114

Query: 140 FRGRRFQNAHETLI 153
             G      HE ++
Sbjct: 115 QLGAGPAGTHEYIL 128


>gi|15612476|ref|NP_224129.1| type III DNA modification enzyme (methyltransferase) [Helicobacter
           pylori J99]
 gi|4156030|gb|AAD06989.1| TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
           pylori J99]
          Length = 641

 Score = 71.9 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 62/164 (37%), Gaps = 18/164 (10%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSL--------VDAV 68
           K  +IKG+++  L+ L    ++ + +I+ DPPYN + +  +Y  D S         +D  
Sbjct: 89  KHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNDNFIYGDDFSQSNEEVLKTLDYS 148

Query: 69  TDSWDKFSSF------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL- 121
            +  D   +         + +F    LL  + +LK +G +++    +   ++  +   + 
Sbjct: 149 KEKLDYIKNLFGSKCHSGWLSFMYPRLLLAKDLLKQDGVIFISIDDNECAQLKLLCDEIF 208

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
                 +         P     + +  HE ++    +   K   
Sbjct: 209 GEGNFIETFLWNKTQTPPSASNKTRKTHEFILCYQKNKDNKKMI 252



 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 43/122 (35%), Gaps = 33/122 (27%)

Query: 199 DGEKLHPTQKPEALLSRILV---SSTKPGDIILDPFFGSGTSGAVAKKLR---------- 245
           D  K+    KP +L+  ++    ++T  GDIILD F GSGT+     +            
Sbjct: 383 DNNKIFNFNKPVSLIKYLISICSNNTNEGDIILDFFAGSGTTAHAVLESNKSDYQKLSEG 442

Query: 246 -------------RSFIG------IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
                        R FI       IE  +   D     + S  P    ++T    KR   
Sbjct: 443 GGLFNGLNAVFKERRFILVQLDEKIEKNKSAYDFCLNTLKSTSP-SIFDITEERIKRAGA 501

Query: 287 RV 288
           ++
Sbjct: 502 KI 503


>gi|332531557|ref|ZP_08407454.1| DNA methylase N-4/N-6 domain-containing protein [Hylemonella
           gracilis ATCC 19624]
 gi|332038920|gb|EGI75349.1| DNA methylase N-4/N-6 domain-containing protein [Hylemonella
           gracilis ATCC 19624]
          Length = 990

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 21/151 (13%)

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNY----------------DALKAANEDVQMRSD 183
             G R Q +H+        P   G  + +                 A +   ++  +R  
Sbjct: 367 SGGNRRQQSHDFKFRGRTFPIKPGQCWKHTVIEDDGSTPGMERLGRADRLHPQNTDVRFV 426

Query: 184 WLIPICSGSERLRNKDG-----EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
              P  S  E     DG      +++  Q  E ++ R L+ +T PGD++LD   GSGT+ 
Sbjct: 427 RHSPQPSIREISNWWDGFGGASNQIYVVQTNERVVQRCLLLATDPGDLVLDITCGSGTTA 486

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            VA++  R +I I+  +  + +A  RI   +
Sbjct: 487 YVAEQWGRRWITIDTSRVALALARARIMGAR 517



 Score = 68.5 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 65/165 (39%), Gaps = 26/165 (15%)

Query: 19  WKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLN-----------------GQ 56
           W +++I G+S++V+  L         V  I+ DPPY ++ N                 G 
Sbjct: 137 WANRMILGDSLAVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGNAGH 196

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
           + R +   V A  D+W       +Y  + R  L   R +L  +G+++V     N+ R+  
Sbjct: 197 ITR-EPEQVKAFRDTW--RDGIHSYLTYLRDRLTVARDLLTDSGSIFVQIGDENVHRVRA 253

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
           ++  +     N I         + +G      ++ ++W     K+
Sbjct: 254 VMDEVFGD-ENCITEILVKKKGSQKGGTLDPVNDFILWYGKQKKS 297


>gi|326333165|ref|ZP_08199413.1| DNA (cytosine-5-)-methyltransferase [Nocardioidaceae bacterium
           Broad-1]
 gi|325949056|gb|EGD41148.1| DNA (cytosine-5-)-methyltransferase [Nocardioidaceae bacterium
           Broad-1]
          Length = 413

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 74/193 (38%), Gaps = 15/193 (7%)

Query: 21  DKIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +  ++G+++ VL+ L    ++ DLI+ DPPYN   +   Y  D    D       +    
Sbjct: 6   NTFVEGDNLDVLQALSAAGETFDLIYIDPPYNTG-SLFAYHDDRRGKDGK-----RAGRH 59

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI--VWRKSNP 136
           EA+ A  R  L A R V+     ++V    +    +  ++  + F   N +  +    NP
Sbjct: 60  EAWIAMMRPRLEAARTVMSERAAIYVSIDDNEAAHLKVLMDEV-FDERNHLAQIVVNLNP 118

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD----WLIPICSGS 192
                G  F  +HE L+  +   ++     +        +   +  D      +P+ + +
Sbjct: 119 KGRQLGNGFATSHEYLLVYAKDARSCALESSIPEAVNERDFPLVTDDGRHYRRLPLRNTN 178

Query: 193 ERLRNKDGEKLHP 205
           ++        LH 
Sbjct: 179 KKFNPATARTLHF 191



 Score = 43.4 bits (101), Expect = 0.050,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 23/87 (26%)

Query: 203 LHPTQKPEALLSRILVSSTKPGD-IILDPFFGSGTSGAVAKKLR------RSFIGIEM-- 253
           L  + KP  L+ RIL  +T P D  +LD F GSGT+G             R+   +++  
Sbjct: 299 LFESPKPTGLIRRIL--ATMPTDARVLDFFAGSGTTGHAVALANVEDGARRTCWSVQIAE 356

Query: 254 -----------KQDYI-DIATKRIASV 268
                      +  Y+ DI   R+ +V
Sbjct: 357 TTRPGSNAAKAEMAYVSDITRARLRAV 383


>gi|296111466|ref|YP_003621848.1| DNA methylase [Leuconostoc kimchii IMSNU 11154]
 gi|295832998|gb|ADG40879.1| DNA methylase [Leuconostoc kimchii IMSNU 11154]
          Length = 608

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 67/177 (37%), Gaps = 27/177 (15%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLY 58
             +   +  EN NS     +    G+++ VL  L A    SVD I+ DPPYN   +G +Y
Sbjct: 68  PDQEHNSKPENANS----HNLFFTGDNLEVLRHLQANYQNSVDFIYIDPPYNTGSDGFVY 123

Query: 59  RPDHSLVDAVTDSWDKFSSFE--------------AYDAFTRAWLLACRRVLKPNGTLWV 104
                  D    +    +  E              A+  F    L   +++LK  G ++V
Sbjct: 124 PDKFEYGDDQLKNMFGLNDDELRRLKSIQGKATHSAWLTFMYPRLYLAKKLLKDTGVIFV 183

Query: 105 IGSYHNIFRIGTMLQNL---NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
               +    +  ++  +     ++ + +V RK+ P          + H+ L+  + +
Sbjct: 184 SIDDNEQANLKLLMDEVFGEGSFVADSVVKRKNAPNNMGN---IPSVHDYLLIFAKN 237



 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 23/96 (23%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEM 253
           GEK+  T KP +L+  I+         ILD F GS T+     +L       R ++ +++
Sbjct: 364 GEKIFDTPKPTSLIKYIVTIFNNKNAHILDFFAGSATTADAVMQLNQEDGGNRKYMMVQL 423

Query: 254 KQDYI---------------DIATKRIA-SVQPLGN 273
             +Y+               +I+ +RI  S + +G+
Sbjct: 424 -PEYLSETSAAYKSGYKTIDEISRERIKRSAKKIGD 458


>gi|325914237|ref|ZP_08176587.1| adenine specific DNA methylase Mod [Xanthomonas vesicatoria ATCC
           35937]
 gi|325539492|gb|EGD11138.1| adenine specific DNA methylase Mod [Xanthomonas vesicatoria ATCC
           35937]
          Length = 978

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 78/213 (36%), Gaps = 50/213 (23%)

Query: 2   SQKNSLAINENQNSIFE-------------WKDKIIKGNSISVLEKLPA-----KSVDLI 43
            Q+++L +  + N + E             W+++ I G+S+ V+  L         V  I
Sbjct: 131 PQQDTLDLFGDFNGLPEGADRTEFYQHEGHWQNRFILGDSLQVMASLAEREGLRGKVQCI 190

Query: 44  FADPPYNLQLNGQLYRPDHSL----------------VDAVTDSWDKFSSFEAYDAFTRA 87
           + DPPY ++ N        S                 V A  D+W       +Y  + R 
Sbjct: 191 YFDPPYGIKFNSNFQWSTTSRDVKDGNADHITREPEQVKAFRDTW--RDGIHSYLTYLRD 248

Query: 88  WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKS----------- 134
            L+  R +L  +G+++V     N+ R+  ++  +        +I++RK+           
Sbjct: 249 RLMVARDLLTESGSIFVQIGGENLHRVRAVMDEVFGEQNFCAEIIFRKTARTSSNLLPTE 308

Query: 135 -NPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
            + +  F   + +  +  +       + K Y +
Sbjct: 309 NDFLVWFARDKEKIKYRPIFQKKDMTELKSYKY 341



 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 39/68 (57%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K++  Q    ++ R ++ +T PGD++LDP  GSGT+  V+++  R +I  +  +  + +A
Sbjct: 460 KIYVVQTDSLVVQRCILMTTDPGDLVLDPTCGSGTTATVSEQWGRRWITTDTSRVALALA 519

Query: 262 TKRIASVQ 269
             RI   +
Sbjct: 520 RARIMGAR 527


>gi|205374887|ref|ZP_03227679.1| DNA methylase N-4/N-6 domain-containing protein [Bacillus
           coahuilensis m4-4]
          Length = 151

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 47/140 (33%), Gaps = 11/140 (7%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           ++KG+ + VL+ +     DLI  DPPY +  NG++ +  +  +D     WD     E   
Sbjct: 5   LLKGDCLQVLKDIDNNIADLIIVDPPYGVLTNGKVVKKGNYEIDDYF-EWDM---LEDLQ 60

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            FT  W        K +  +++  S          ++        D V           G
Sbjct: 61  QFTTEWFEKLYNKAKEDSFIYIFWSQK-------YMRMGYEIFNPDRVIFWHYKNLTLGG 113

Query: 143 RRFQNAHETLIWASPSPKAK 162
               +     I+       K
Sbjct: 114 NGDFSYDYDPIFVVKKGNPK 133


>gi|118576278|ref|YP_876021.1| DNA modification methylase [Cenarchaeum symbiosum A]
 gi|118194799|gb|ABK77717.1| DNA modification methylase [Cenarchaeum symbiosum A]
          Length = 288

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 91/272 (33%), Gaps = 45/272 (16%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP----Y-NLQLNG 55
           M++     +N + N++     K+  G      E++   S+D++  DPP    Y  L    
Sbjct: 18  MNKMGINEVNIDGNTL-----KLANG--FEECERIANDSIDVLITDPPSNTYYHFLDKIV 70

Query: 56  QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
                +  ++  +  +  K    E        W+      ++    ++      ++F   
Sbjct: 71  PSRISNRGMLHPMPINPAKRFGSEL---LASNWVNFVLPKIRKRVIIF------SLFETK 121

Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
             +Q L     N++          F       +   ++    + + K     +    + +
Sbjct: 122 NYIQELKKLGFNNLKLFLWEKSSLFDDHIVTGSEHIIVGEKTNNEFKENFIEFKYRSSLS 181

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
           E V                         +P QKP  L+ + +   T   D ILDPF GSG
Sbjct: 182 EYVM------------------------YPEQKPLQLIEKSIKHFTDINDSILDPFGGSG 217

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           T+   + K  R     E  +   ++A  R+ +
Sbjct: 218 TTMLASMKTGRKSTTFEWDECVYNMAKCRVGN 249


>gi|329734469|gb|EGG70781.1| DNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
           VCU028]
          Length = 648

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 69/173 (39%), Gaps = 18/173 (10%)

Query: 6   SLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLY---- 58
              I+  +++  + ++    G+++ VL  L      SVD I+ DPPYN   +G LY    
Sbjct: 84  PNVIHNKKSANKDSENLYFTGDNLEVLRHLQQNYKDSVDFIYIDPPYNTGSDGFLYPDTF 143

Query: 59  ----RPDHSLVDAVTDSWDKFSSFE------AYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
                   S+     +   KF + +      A+  F    L   + +LK +G ++V    
Sbjct: 144 EYDDSKLMSMFSFSEEEMKKFKNIQGKSSHSAWLTFMYPRLYLAKNLLKEDGLIYVSIDE 203

Query: 109 HNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
           +    +  +L ++       +    +SN  P+   + ++   E ++    + +
Sbjct: 204 NEHANLKLILDDIFGEQGFIENYIWESNFRPDNSSQIYRKNAENILLYVKNKQ 256



 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 8/91 (8%)

Query: 177 DVQMRSDWLIPICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
           +  +  D++  + SG   L    + +++    KP +L+  +L +  K   ++LD F GS 
Sbjct: 370 NKIIPKDYVSDVLSGRSELMQIFNNQQVFNYPKPTSLIEYLLKTIGKKDAVVLDFFSGSA 429

Query: 236 TSGAVAKKLR------RSFIGIEMKQD-YID 259
           T+     KL       R FI +++ ++ YI+
Sbjct: 430 TTADAVLKLNNKDEGSRKFILVQLPEEIYIE 460


>gi|148656308|ref|YP_001276513.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus sp.
           RS-1]
 gi|148568418|gb|ABQ90563.1| DNA methylase N-4/N-6 domain protein [Roseiflexus sp. RS-1]
          Length = 348

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 62/165 (37%), Gaps = 17/165 (10%)

Query: 104 VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
                H  +     +        N     K  P  +F G+R  N  E   +    P  KG
Sbjct: 179 YFTRDHLWYAPPPEIFERMVKYANKYGNPKGRPYFSFDGKRPANQDE---YKRIFPTFKG 235

Query: 164 YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK-DGEKLHPTQKPEALLSRILVSSTK 222
                           + + W  P     ERLR +  G+  H  QKP  L+  I+ +S+ 
Sbjct: 236 RY-------------GVTNVWNHPPLHNEERLRIRGSGKYAHLNQKPIKLIELIIEASSN 282

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           PGD+I +PF G  T+G V+  + R     E+ +    +A  R+  
Sbjct: 283 PGDVIWEPFGGLCTAGLVSCLMSRIAYCAEIDEHIFKMAVSRMEE 327


>gi|212703129|ref|ZP_03311257.1| hypothetical protein DESPIG_01168 [Desulfovibrio piger ATCC 29098]
 gi|212673395|gb|EEB33878.1| hypothetical protein DESPIG_01168 [Desulfovibrio piger ATCC 29098]
          Length = 289

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 17/142 (11%)

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAF- 290
            GSGT+ AVA KL R FIG ++    I   TKR+  +          L    ++  + F 
Sbjct: 1   MGSGTTQAVAMKLGRRFIGADINLGAIQTTTKRLNGIIAEKKQAQHSLLDDGSKLYLNFE 60

Query: 291 -----NLLVERGLIQPGQILTNA-------QGNISATVCADGTLISGTELGSIHRVGAKV 338
                N  V R  +Q  ++L  A         ++   +  DG      ++  ++R+  + 
Sbjct: 61  VYNVNNYDVFRNPVQARELLLQALEIDPLESTDVFDGMK-DG---YKVKIMPVNRIATRA 116

Query: 339 SGSETCNGWNFWYFEKLGELHS 360
             +   NG N+   ++  EL  
Sbjct: 117 DLNPLLNGINYRELDRQMELSP 138


>gi|312874131|ref|ZP_07734165.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF
           2052A-d]
 gi|311090201|gb|EFQ48611.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF
           2052A-d]
          Length = 570

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE------RLRNKDGEK 202
           +  +         KG  ++   +K   E     S    P+ +  +        R + G  
Sbjct: 278 YRYISGPKKPTAKKGKFYSGVPMKRRAEINSGTSVKYKPVSNFYDFSGAFGNCRLEGGVG 337

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
               +KPE ++ +IL   T  GD++LD F GS ++ AVA K+ R +IGIEM      +  
Sbjct: 338 FKGGKKPEVMIKQILEYYTNVGDLVLDSFLGSASTIAVAHKMNRRYIGIEMGDHAYTLCK 397

Query: 263 KRIASV 268
            R+ +V
Sbjct: 398 TRLDNV 403



 Score = 63.1 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 67/198 (33%), Gaps = 32/198 (16%)

Query: 21  DKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + +I G+++  L+ L +K    V  I+ DPPYN                   + +D    
Sbjct: 42  NMLIHGDNLLALKALESKYAGKVKCIYIDPPYNTG--------------NAFEYYDDNRE 87

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
              +    R+ L+  R +L P+G L         F +  +L         +I  R +  +
Sbjct: 88  HSIWLNLMRSRLIILRNLLAPDGVLCCQIDDSEGFYLKVLLD--------EIFGRDNYLV 139

Query: 138 PNFRGRRFQNAH--ETLIWASPSPKAKGYTFNYDA---LKAANEDVQMRSDWLI--PICS 190
             +   R+ N    E   +     +   Y+ +  A    +   E    +  W I      
Sbjct: 140 TLYIQVRYTNKTLAEDSDYQKVIEQCHVYSKDRTAVKLNRPTEEYSLEKFRWKIIEKCPG 199

Query: 191 GSERLRNKDGEKLHPTQK 208
              +L  KD E   P Q 
Sbjct: 200 KKIKLGGKDVEIFKPEQY 217


>gi|206603420|gb|EDZ39900.1| putative type III restriction-modification system, methylation
           subunit [Leptospirillum sp. Group II '5-way CG']
          Length = 856

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 6/110 (5%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            G  ++  Q    ++ R L+ ++ PGD++ DP  GSGT+  VA++  R +I  +  +  +
Sbjct: 416 SGASIYVVQTSTKVIERCLLMTSDPGDLVFDPTCGSGTTAYVAEQWGRRWITCDTSRVAL 475

Query: 259 DIATKRIASVQ----PLGNIELTVLTG--KRTEPRVAFNLLVERGLIQPG 302
            +A +R+ +       L   +  V +G   +T P +    +     I+ G
Sbjct: 476 TLAKQRLMTASFDYYELARPDEGVSSGFQYKTVPHITLKSIANNPEIKEG 525



 Score = 69.6 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 70/196 (35%), Gaps = 28/196 (14%)

Query: 18  EWKDKIIKGNSISVLEKLPAK-----SVDLIFADPPYNLQL----------------NGQ 56
            W +++I G+S+ V+  L  K      V +I+ DPPY ++                   +
Sbjct: 122 NWSNRLIAGDSLLVMNSLLEKEGMAGKVQMIYIDPPYGIRYGSNFQPFVNKRDVKDGKDE 181

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
               +   + A  D+W+      +Y  F R  LL  R +L  +G+ +V  S  N+  +  
Sbjct: 182 DLNQEPETLKAFRDTWE--VGIHSYLTFLRDRLLLARELLHESGSCFVQISDENVHHVRE 239

Query: 117 MLQNL--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
           ++  +  N      I +RK+    +    R     + L+W + +     Y   Y      
Sbjct: 240 LMDEVFGNDNFCGMISFRKTGAFESVLLGRTS---DYLLWYACNRSKVKYRGIYREKNPE 296

Query: 175 NEDVQMRSDWLIPICS 190
                       P  +
Sbjct: 297 EGTGAYYRWVEEPNVN 312


>gi|325972192|ref|YP_004248383.1| DNA methylase N-4/N-6 domain protein [Spirochaeta sp. Buddy]
 gi|324027430|gb|ADY14189.1| DNA methylase N-4/N-6 domain protein [Spirochaeta sp. Buddy]
          Length = 932

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 6/102 (5%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
           Y           +R  W     SG         +KL+  Q    ++ R ++ +T PGD++
Sbjct: 399 YIRYFNDYPVSPLRDIWDDTGHSGF------SYDKLYVVQTGTNVIQRCILMTTDPGDLV 452

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           LDP  GSGT+  VA++  R +I I+  +  + +A  RI   +
Sbjct: 453 LDPTCGSGTTAYVAEQWGRRWITIDTSRVALALARGRIMGAR 494



 Score = 70.8 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 72/202 (35%), Gaps = 28/202 (13%)

Query: 5   NSLAINENQNSIFEWKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYR 59
           N  A  E       W +++I G+S+ V+  L         V  I+ DPPY ++ N     
Sbjct: 116 NEAAKTEFYQHDAHWSNRMILGDSLYVMASLAEREGLRGKVQCIYIDPPYGIKFNSNFQW 175

Query: 60  PDHSL----------------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW 103
              S                 V A  D+W       +Y  F R  L   R +L  +G+++
Sbjct: 176 STTSREVRDGNIQHITRESEQVKAFRDTW--RYGVHSYLTFLRERLTISRELLSDSGSIF 233

Query: 104 VIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
           +     N+ RI  ++  +       + I +  +         R     + ++W S + + 
Sbjct: 234 IQIGEENVHRIRVLMDEIFGENNYQSTIYFATTGGFATSGLSRIG---DYILWYSKNAEN 290

Query: 162 KGYTFNYDALKAANEDVQMRSD 183
             +   Y   K A++D     +
Sbjct: 291 TKHRQLYTKKKGADDDRSAYKN 312


>gi|324010283|gb|EGB79502.1| hypothetical protein HMPREF9533_05738 [Escherichia coli MS 60-1]
          Length = 63

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 28/44 (63%)

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           I+LDPF GSG++   A +  R +IGIE+ + Y     +R+ +VQ
Sbjct: 2   IVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLTAVQ 45


>gi|315654735|ref|ZP_07907641.1| adenine-specific DNA modification methyltransferase [Mobiluncus
           curtisii ATCC 51333]
 gi|315491199|gb|EFU80818.1| adenine-specific DNA modification methyltransferase [Mobiluncus
           curtisii ATCC 51333]
          Length = 394

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 5/138 (3%)

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNA-----HETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
            +       + P   +   R+  A     +  L +      A  +   Y  ++  +E   
Sbjct: 221 WICAHPHPNAKPGLRYHAWRWSRAKVERDYADLEFQVRGRGAHRHLKIYTKIRNFHETAL 280

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
                     SG   L+      L  T KP  LL  ++ ++T PGD +LD F GSGT+G 
Sbjct: 281 KDLVIGPSTISGQRELQRLGLGGLFETPKPTKLLQVLIEAATSPGDTVLDFFAGSGTTGQ 340

Query: 240 VAKKLRRSFIGIEMKQDY 257
            A    R F+ I++++ +
Sbjct: 341 AAHTAGRRFVLIQLEEPF 358



 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 47/134 (35%), Gaps = 18/134 (13%)

Query: 23  IIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +++ ++   L  L    + V +I+ DPPYN                  T ++    + + 
Sbjct: 10  LLRADAAVGLRALHQAGQRVQMIYIDPPYNTG---------------NTFAYHDRRAKDE 54

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNPMPN 139
           + A     L   R +L P+G +++   ++ +  +   +        L       SN    
Sbjct: 55  WLAMMHPLLATAREILTPDGLIFISIDFNQLCELKLEMDRTFGTENLIGNFVWVSNLKGR 114

Query: 140 FRGRRFQNAHETLI 153
             G      HE ++
Sbjct: 115 QLGAGPAGTHEYIL 128


>gi|304390085|ref|ZP_07372039.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304326567|gb|EFL93811.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 394

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 5/138 (3%)

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNA-----HETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
            +       + P   +   R+  A     +  L +      A  +   Y  ++  +E   
Sbjct: 221 WICAHPHPNAKPGLKYHAWRWSRAKVERDYADLEFQVRGRGAHRHLKIYTKIRNFHETAL 280

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
                     SG   L+      L  T KP  LL  ++ ++T PGD +LD F GSGT+G 
Sbjct: 281 KDLVIGPSTISGQRELQRLGLGGLFETPKPTKLLQVLIEAATSPGDTVLDFFAGSGTTGQ 340

Query: 240 VAKKLRRSFIGIEMKQDY 257
            A    R F+ I++++ +
Sbjct: 341 AAHTAGRRFVLIQLEEPF 358



 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 18/134 (13%)

Query: 23  IIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +++ ++ + L  L    + V +I+ DPPYN                  T ++    + + 
Sbjct: 10  LLRADAAAGLRALHQAGQRVQMIYIDPPYNTG---------------NTFAYHDRRAKDE 54

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNPMPN 139
           + A     L   R +L P+G +++   ++ +  +   +        L       SN    
Sbjct: 55  WLAMMHPLLATAREILTPDGLIFISIDFNQLCELKLEMDRTFGTENLIGNFVWVSNLKGR 114

Query: 140 FRGRRFQNAHETLI 153
             G      HE ++
Sbjct: 115 QLGAGPAGTHEYIL 128


>gi|317123336|ref|YP_004097448.1| DNA methylase N-4/N-6 domain protein [Intrasporangium calvum DSM
           43043]
 gi|315587424|gb|ADU46721.1| DNA methylase N-4/N-6 domain protein [Intrasporangium calvum DSM
           43043]
          Length = 225

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 5/78 (6%)

Query: 193 ERLRNKDG--EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           ER    DG  E +H T   E L + ++   ++PGD++LDPF G GT+  VA +L R  +G
Sbjct: 20  ERAAGADGADEDVHFT---EHLATEVIERLSEPGDLVLDPFAGFGTTLLVADRLGRRGLG 76

Query: 251 IEMKQDYIDIATKRIASV 268
           +E+  + +D+   R+ + 
Sbjct: 77  VELLPERVDVVRARVPAA 94



 Score = 40.7 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 9/83 (10%)

Query: 22  KIIKGNSISVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            I++G++  +   LP    V L    PPY    N   + P  +             S+ +
Sbjct: 95  TIVEGDARGLHRLLPDAGPVALCLTSPPYRTA-NDHPHDPLTAYTLVAG-------SYAS 146

Query: 81  YDAFTRAWLLACRRVLKPNGTLW 103
           Y A   +   A RR+L+P G L 
Sbjct: 147 YLADLASIAQALRRILRPGGHLV 169


>gi|160943496|ref|ZP_02090729.1| hypothetical protein FAEPRAM212_00987 [Faecalibacterium prausnitzii
           M21/2]
 gi|257437675|ref|ZP_05613430.1| adenine specific DNA methylase [Faecalibacterium prausnitzii
           A2-165]
 gi|158445175|gb|EDP22178.1| hypothetical protein FAEPRAM212_00987 [Faecalibacterium prausnitzii
           M21/2]
 gi|257199982|gb|EEU98266.1| adenine specific DNA methylase [Faecalibacterium prausnitzii
           A2-165]
          Length = 587

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 67/171 (39%), Gaps = 12/171 (7%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQL 57
           + +K S   N   +     ++ II+G+++  L+ L       V  I+ DPPYN    G +
Sbjct: 24  LERKYSFDENGQHSEDNGSENMIIRGDNLEALKALLPRYEGRVKCIYIDPPYNTGNEGWV 83

Query: 58  Y-------RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
           Y       +    L + V    +  +  + +       L   +++L  +G L +  SYH 
Sbjct: 84  YNDNVNDPKIKKWLGEVVGKEGEDLTRHDKWLCMMYPRLKLLQKLLADDGCLIISISYHE 143

Query: 111 IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
           +  +  +L+ +        V  +++      G  +    E L++  P+   
Sbjct: 144 LHNLVNLLREIFGTKQIVTVTVQTSGGKPSGGFNYVQ--EYLVFVVPADFH 192



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 10/90 (11%)

Query: 188 ICSGSERLRN--KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
             +G++ L+N   +  K     K  AL+  ++ + TK  DIILD F GSGT+      + 
Sbjct: 367 TVNGTQTLKNIFPESPKTFDYPKSVALIESVVQAITKDADIILDSFAGSGTTAHAVLNMN 426

Query: 246 ------RSFIGIEMKQDYID-IATKRIASV 268
                 R FI +EM  DY D I  +R+  V
Sbjct: 427 KADGGHRKFILVEM-MDYADSITAERVKRV 455


>gi|291568623|dbj|BAI90895.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 310

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 76/198 (38%), Gaps = 20/198 (10%)

Query: 22  KIIKGNSISVLEKLPAK-----SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           ++  G+++ VL  L  +     S++LI+ DPP+  +         H L    + ++D   
Sbjct: 49  RLYFGDNLDVLRLLATEPEICGSINLIYIDPPFATE--------SHFLSRKQSKAYDDTL 100

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKS 134
           +   +  F R  L+   ++L  +G++++      IF I  ++  +       N IV +K 
Sbjct: 101 TGAVFVEFLRERLIWLHQLLSNHGSIYLHLDEKMIFHIKLIMDEVFGAENYRNMIVRKKC 160

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK-AANEDVQMRSDWLIPICSGSE 193
           NP    R    + A   L +      +  Y +N   +  + N   + +           +
Sbjct: 161 NPKNYTRRTYGKTADFILFYTK----SDTYIWNQPKVPLSENSKKEYQYIEPETGRKFMK 216

Query: 194 RLRNKDGEKLHPTQKPEA 211
              +  G +   T KP  
Sbjct: 217 VPLHAPGVRHGETGKPWR 234


>gi|121596365|ref|YP_988261.1| DNA methylase N-4/N-6 domain-containing protein [Acidovorax sp.
           JS42]
 gi|120608445|gb|ABM44185.1| DNA methylase N-4/N-6 domain protein [Acidovorax sp. JS42]
          Length = 1103

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 39/70 (55%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
             +K +  Q     + R ++ +T PGD++LDP  GSGT+  VA+K  R +I  +  +  I
Sbjct: 579 SDKKAYVVQTHPLAVERCMLMTTDPGDLVLDPTCGSGTTAYVAEKWGRRWITCDTSRVAI 638

Query: 259 DIATKRIASV 268
            +A +R+ + 
Sbjct: 639 TLAKQRLMTA 648



 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 82/205 (40%), Gaps = 30/205 (14%)

Query: 19  WKDKIIKGNSISVLEKL-----PAKSVDLIFADPPYNLQLN-------GQLYRPDHS--- 63
           W ++++ G+S+ V+  L      A  V +I+ DPPY ++         G+    D +   
Sbjct: 289 WANRLVAGDSLLVMNSLLQKEGMAGQVQMIYIDPPYGIKYGSNFQPFVGKRDVKDRADAD 348

Query: 64  ------LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
                 ++ A  D+W+      +Y  + R  LL  R +L  +G+++V  S  N+  +  +
Sbjct: 349 LTQEPEMIKAFRDTWE--LGIHSYLTYLRDRLLLARELLSDSGSVFVQISDENLHHVREL 406

Query: 118 LQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
           +  +      L  I ++K+            + ++ L+W + +     Y   Y    A  
Sbjct: 407 MDEVFGSDNFLGLIAYKKTTSAATLG---LASVYDMLVWYARNKTQTKYRQLYLEKIAG- 462

Query: 176 EDVQMRSDWLIPICSGSERLRNKDG 200
           ED   +  W   +  GS +     G
Sbjct: 463 EDGGTQYTWAQ-LPDGSRKNYGVKG 486


>gi|5578898|emb|CAB51247.1| ORF3; hypothetical protein [Neisseria meningitidis]
          Length = 171

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 44/126 (34%), Gaps = 2/126 (1%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWL-IPICSGSERL-RNKDGEKLHPTQKPE 210
           +W           ++ +  +  N        W      S   R    K+  K HPTQKP 
Sbjct: 37  LWLRSEYNKGFIIWDKNQPETLNNFSMAEMAWSSFDRPSKIFRFSVRKNRNKTHPTQKPV 96

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
            L   +L    K GD ILD   GSGT        +      E+  DY   + ++I +  P
Sbjct: 97  ELYQWLLKMYAKQGDKILDTHLGSGTLAIACCIAQFDLTACEINSDYYQQSIEKIKNNLP 156

Query: 271 LGNIEL 276
              I  
Sbjct: 157 EARISF 162


>gi|331007695|ref|ZP_08330828.1| Type III restriction-modification system methylation subunit [gamma
           proteobacterium IMCC1989]
 gi|330418497|gb|EGG93030.1| Type III restriction-modification system methylation subunit [gamma
           proteobacterium IMCC1989]
          Length = 626

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 71/185 (38%), Gaps = 20/185 (10%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLN-------GQLYRPDHSLVDAVT 69
           K+  I+G+++ VL+ L    A  V +I+ DPPYN            +           V 
Sbjct: 97  KNLFIEGDNLEVLKLLQKSYANKVKMIYIDPPYNTGKEFIYPDCFQENLDTYLKYTGQVD 156

Query: 70  DSWDKFSSFEA--------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
           +   KFSS           + +   + L   R +LK +G L+V    + I  + ++  ++
Sbjct: 157 EEGMKFSSNTESTGRMHSNWLSMMYSRLKIARGLLKNDGILFVSIDDNEIANLTSICHDI 216

Query: 122 N--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
                 L   VW++     +         HE ++  + +  A+    + D  K  N D  
Sbjct: 217 FGEDHFLGCFVWKRRQNADSRNYSNVSPDHEYILAYAKTLDAQLKGKSIDTSKYKNPDND 276

Query: 180 MRSDW 184
            R DW
Sbjct: 277 PRGDW 281



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 60/167 (35%), Gaps = 20/167 (11%)

Query: 106 GSYHNIFRIGTMLQNLNFWILNDIV-WRKSNPMPNFRGRRFQNAHET---------LIWA 155
           G + +I   G    +    +  DIV     N  P    R +  + +          +++ 
Sbjct: 279 GDWASIDLSGLATSDQRPNLHYDIVDPETGNSYPPNPNRGWSKSKDRVQKMIEEGQILFP 338

Query: 156 SPS---PKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
           +     P+ K +  +  +         + SD      +G+  + +  G K+    KP  L
Sbjct: 339 AKPTGRPREKKFIADLQSSVTG-VSTWLSSDISGFTTNGTREVSSLFGAKVFDFPKPVQL 397

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEM 253
           +   +   T   DI++D F GS T+     +        R F+ I++
Sbjct: 398 IKFFVDQLTSKDDIVMDFFAGSATTAQAVMEASAEDSNNRRFLCIQL 444


>gi|148927601|ref|ZP_01811069.1| DNA methylase N-4/N-6 domain protein [candidate division TM7
           genomosp. GTL1]
 gi|147887050|gb|EDK72550.1| DNA methylase N-4/N-6 domain protein [candidate division TM7
           genomosp. GTL1]
          Length = 165

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 40/81 (49%)

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
              G+ +    KP  +L   +   TK  D++++PF GSG++   + KL+R    +E    
Sbjct: 85  KHSGQGVIFGTKPIEILVPYIKVLTKRDDLVVEPFCGSGSTLIASTKLKRRCYIMEKSPV 144

Query: 257 YIDIATKRIASVQPLGNIELT 277
           Y ++A KR   +  L   +LT
Sbjct: 145 YAEVALKRWEKLTGLKREKLT 165


>gi|332884123|gb|EGK04393.1| hypothetical protein HMPREF9456_03417 [Dysgonomonas mossii DSM
           22836]
          Length = 229

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTK-----PGDIILDPFFGSGTSGAVAKKLRRSF 248
           R   +  + +HPTQKP  L+ R+L    K     P  ++LD F GS ++      L    
Sbjct: 138 RQIGERYKAIHPTQKPPRLIERLLALVCKIEPNKPKPLVLDTFRGSASTDIACMNLGVDC 197

Query: 249 IGIEMKQDYIDIATKR 264
           I  E+  +Y +   +R
Sbjct: 198 ISFEIDDEYFEKGEER 213


>gi|150008744|ref|YP_001303487.1| methyltransferase [Parabacteroides distasonis ATCC 8503]
 gi|149937168|gb|ABR43865.1| methyltransferase [Parabacteroides distasonis ATCC 8503]
          Length = 602

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 73/203 (35%), Gaps = 26/203 (12%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
             +I+G+++  L  L       +D+I+ DPPYN   N  +Y       D+  D  D +  
Sbjct: 77  HILIEGDNLEALATLAYTHEGKIDIIYIDPPYNTGNNDFIYN------DSYVDKEDSYRH 130

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF--WILNDIVWRKSN 135
            + + +F    L   +++L   G +++    +    +  +  ++          +WRK +
Sbjct: 131 SK-WLSFMSRRLRIAKKLLSDYGVIFISIDDNEQADLKILCDSIFMPSNFCGQFIWRKKS 189

Query: 136 PMPNFRGRRFQNAHETLI-------WASPSPKAKGYTFNYDALKAANEDVQMRSDWLI-- 186
                  R F   HE ++       +     + +    NY           ++ +     
Sbjct: 190 GGGQ-TDRYFVTEHEYILVYQATNKFCWKDIQIEKSRKNYKYQDEKGSYNLIKLEKWGSS 248

Query: 187 ----PICSGSERLRNKDGEKLHP 205
                  S    ++N DGE  +P
Sbjct: 249 AHKEDRPSMYFPIKNPDGEDFYP 271



 Score = 43.8 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 10/107 (9%)

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK-LHPTQKPE 210
           + W +  P  K Y    +      +   +  + +     GS  L N   EK +    KP 
Sbjct: 297 IEWKNGIPYEKDYYSETEVKTKTQKSRSILYN-VGETGDGSNLLTNIFREKDVFQNPKPL 355

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGI 251
           +L+  ++  ++   + ILD F GSGT+     +L       R  I I
Sbjct: 356 SLIKELISHNS--ANYILDFFSGSGTTLHATMQLNAEDGGNRQCILI 400


>gi|116750281|ref|YP_846968.1| DNA methylase N-4/N-6 domain-containing protein [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699345|gb|ABK18533.1| DNA methylase N-4/N-6 domain protein [Syntrophobacter fumaroxidans
           MPOB]
          Length = 938

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 40/69 (57%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           EK++  Q     + R L+ ST PGD++LDP  GSGT+  VA++  R +I I+  +  + +
Sbjct: 432 EKIYAVQSGIKAVQRCLLMSTDPGDLVLDPTCGSGTTAYVAEQWGRRWITIDTSRVALAL 491

Query: 261 ATKRIASVQ 269
           A  RI   +
Sbjct: 492 ARARIMGAR 500



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 6   SLAINENQNSIFEWKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRP 60
             A  E       W +++I G+S+ V+  L         V  I+ DPPY ++ N      
Sbjct: 118 ESARTEFYRHEANWSNRMILGDSLQVMASLVEREGLRGKVQCIYIDPPYGIKFNSNFQWS 177

Query: 61  DHSL----------------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
             S                 V A  D+W       +Y  + R  L   R +L   G+++V
Sbjct: 178 TTSRDVKDGNTEHITREPEQVRAFRDTW--RDGIHSYLTYLRDRLTVARDLLADTGSIFV 235

Query: 105 IGSYHNIFRIGTMLQNL-NFWILNDIVWRK---SNPMPNFRGRRFQNAHETLIWASPSPK 160
                N+ RI  ++  +        ++  K       P        +  + ++W +   +
Sbjct: 236 QIGDENVHRIRALMDEVFGEENFCSLIGYKKTTGAGSPAIGTDVLASVKDYIVWFARKKR 295

Query: 161 AKGYTFNYDALKA 173
              Y   Y   + 
Sbjct: 296 DVKYRQLYFEKET 308


>gi|110003969|emb|CAK98309.1| hypothetical protein n-6 adenine-specific dna methylases signature
           ps00092 [Spiroplasma citri]
          Length = 195

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 73/201 (36%), Gaps = 24/201 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPP--YNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K+I G++++ ++ L    VDLI  DPP  YNL          +++  ++    +      
Sbjct: 8   KLINGDALTFIKSLENDIVDLILTDPPYLYNLPKRKNEQINKNNISKSINKYINAIYDNN 67

Query: 80  AYDAF-TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            +++F    +L    R+ K    L     + N ++I   L  +    +N   +      P
Sbjct: 68  LHNSFDINTYLDEFYRISKTKFMLI----WMNRWQIKDYLDWVYKNNMNFDFYFWEKTNP 123

Query: 139 NFRGRRF-QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
                   Q+    +I  S   +   Y  NY+  K            +    +GS     
Sbjct: 124 MPTNNFILQDKEYCMIIYSKKHQIPNYQNNYENKKT-----------IFKNSTGSAYKIT 172

Query: 198 KDGEKLHPTQKPEALLSRILV 218
           +     HPT+KP  +   ++ 
Sbjct: 173 E-----HPTEKPLNIFYDLIQ 188


>gi|284097306|ref|ZP_06385442.1| type III restriction-modification system methyltransferase
           [Candidatus Poribacteria sp. WGA-A3]
 gi|283831180|gb|EFC35154.1| type III restriction-modification system methyltransferase
           [Candidatus Poribacteria sp. WGA-A3]
          Length = 545

 Score = 70.8 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 67/164 (40%), Gaps = 19/164 (11%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP 60
           + SL +  ++ S+ +  + II G+++  L+ L       V+ I+ DPPYN    G +Y  
Sbjct: 29  RKSLPLKGSKPSLDD--NLIIHGDNLHALKALMPRYAGRVNCIYIDPPYNTGNEGWIY-- 84

Query: 61  DHSLVDAVTDSWDKFSS---------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
           + ++   +   W K  S          + +       L   R +L  +G L++    +  
Sbjct: 85  NDNVNSPMMQEWLKGKSPVDGEDLERHDKWLCMMWPRLHLLRELLAEDGVLFISIDDNEQ 144

Query: 112 FRIGTMLQNL--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
            R+  M+  +      +  I+W K    P    + F   H+ ++
Sbjct: 145 HRLRMMMDEIFSGENFVATIIWEKVYS-PKSSAKHFSENHDFIV 187



 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 59/194 (30%), Gaps = 37/194 (19%)

Query: 119 QNLNFWILNDIVWRKSNP-----MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
                W  +D+  R         +   RGR  ++      W     K      +      
Sbjct: 217 DPRGMWKPSDLSARNPYSKGTYSIKCPRGRVIKSPPPGNFWRYSEEKFWELDRDNRIWWG 276

Query: 174 ANEDVQMRSDWLIP----------ICSGSERLRNKDGEKL-----------HPTQKPEAL 212
            + +        +           I +  E    +D +K              T KP  L
Sbjct: 277 EDRNQVPAIKRFLSEVKQGLVPETIWTYKEVGHTQDAKKTLLQIFPKDFPDFTTTKPVEL 336

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYIDIA----T 262
           L+RI+  ST    IILD F GSGT+      L       R FI  E  +DY D       
Sbjct: 337 LTRIIRLSTDKDSIILDSFAGSGTTAHAVLALNKEDGGNRKFILAEC-EDYADTITAERV 395

Query: 263 KRIASVQPLGNIEL 276
           +R+    P    E 
Sbjct: 396 RRVIKGLPKAKDEN 409


>gi|291227261|ref|XP_002733611.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 768

 Score = 70.8 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 47/261 (18%), Positives = 99/261 (37%), Gaps = 31/261 (11%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
           S++ + AI   +NS+  +   I+ GNS+ ++   P +             ++ G +   D
Sbjct: 518 SREKTPAIIHGRNSVKAF---IVNGNSMEIV---PEE-----LT------KITGHVTGFD 560

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
             ++D   +  +K        +F             PN  + V+G   N+  I   L   
Sbjct: 561 LVILDTPQNWQEK-----DMQSFLVTVKNVNITARLPNYCMTVLGEMENLPTIKLQLTAA 615

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLI-WASPSPKAKGYTFNYDALKAANEDVQM 180
               ++   +   + + +       + H  ++ + +   K K  + N      +N     
Sbjct: 616 GCTKVDTAFYYVEDAISDSVT-LTNSVHPVVVGYWASDGKIKRTSLNITDELPSNRHNFW 674

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           ++   +    G       DG  ++ TQK  AL  +++   T P   +LD   G+G++   
Sbjct: 675 KTVKPVLDKDG-------DGVIVNSTQKNVALFEKMIEVFTYPNQWVLDACCGTGSAIIA 727

Query: 241 AKKLRRSFIGIEMKQDYIDIA 261
           A K  R+ IG ++ +  +  A
Sbjct: 728 AMKCGRNCIGFDIDEKQVQHA 748


>gi|325564022|gb|ADZ31409.1| M.SpeI [Sphaerotilus natans]
          Length = 78

 Score = 70.8 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 4/70 (5%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            +I+LDPF GSGT+   AK+L  +++GIE+   Y  IA +R+     +   E + LTG++
Sbjct: 12  NNIVLDPFAGSGTTLVAAKQLGLTYLGIEINPTYAAIAKQRLG----IDKAEPSSLTGQQ 67

Query: 284 TEPRVAFNLL 293
              R A  ++
Sbjct: 68  EIFRHAAGVV 77


>gi|315644996|ref|ZP_07898123.1| hypothetical protein PVOR_05755 [Paenibacillus vortex V453]
 gi|315279629|gb|EFU42932.1| hypothetical protein PVOR_05755 [Paenibacillus vortex V453]
          Length = 390

 Score = 70.8 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 51/158 (32%), Gaps = 8/158 (5%)

Query: 21  DKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +++ G++     V   +      L+  DPPYN+ +   +   +    +           
Sbjct: 204 HRLVCGDATDPEDVALLMDGAKAALVVTDPPYNVAV---VSDSERLAANGHDSIMSDDMP 260

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E +  F  A   +   ++     ++V  S          +      + +  VW K+   
Sbjct: 261 AEEFAGFLHAVFQSYGSIMDQAAAIYVFHSSSYQREFEDAMNASGIVVRSQCVWVKNAAS 320

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
             +   R+Q  HE + +A    KA  +  +        
Sbjct: 321 FGWSQYRWQ--HEPIFYAHKRGKAPAWYGDRRQSTVWR 356


>gi|295101251|emb|CBK98796.1| Adenine specific DNA methylase Mod [Faecalibacterium prausnitzii
           L2-6]
          Length = 529

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 66/199 (33%), Gaps = 15/199 (7%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQL 57
           + +K S   N         ++ II+G+++  L+ L       V  I+ DPPYN    G +
Sbjct: 24  LERKYSFDENGQHGEDNGSENMIIRGDNLEALKALLPRYEGRVKCIYIDPPYNTGNEGWV 83

Query: 58  Y-------RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
           Y       +    L + V    +  +  + +       L   +++L  +G +++      
Sbjct: 84  YNDNVNDPKIKRWLGEVVGKEGEDLTRHDKWLCMMYPRLKLLQKLLAEDGAIFISIDDAE 143

Query: 111 IFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP----SPKAKGYT 165
            F + ++   +         V  + N  P    + F   H+ ++            K   
Sbjct: 144 FFNLRSICNEVFGEQNFIATVIWRKNYAPKSTAKHFSEDHDYILVFGKNADMWTPHKMPR 203

Query: 166 FNYDALKAANEDVQMRSDW 184
                    N D   R  W
Sbjct: 204 TEKQNKAYKNPDNDPRGLW 222



 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 37/77 (48%), Gaps = 8/77 (10%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIE 252
            GE    T KP  L+ RIL  ++    IILD F GSGT+      +       R FI +E
Sbjct: 322 SGEMPFDTPKPYHLIERILQIASDSDSIILDSFAGSGTTAHAVLNMNKADGGHRKFILVE 381

Query: 253 MKQDYID-IATKRIASV 268
           M  DY D I  +R+  V
Sbjct: 382 M-MDYADSITAERVKRV 397


>gi|196229823|ref|ZP_03128687.1| DNA methylase N-4/N-6 domain protein [Chthoniobacter flavus
           Ellin428]
 gi|196226149|gb|EDY20655.1| DNA methylase N-4/N-6 domain protein [Chthoniobacter flavus
           Ellin428]
          Length = 1058

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           +IPI    E L+    E L+  Q    +L R ++  T PGD+++DP  GSGT+  VA++ 
Sbjct: 453 VIPITDHWESLQ-IGTELLYVVQTSSTILQRCMLMCTDPGDLVVDPTCGSGTTALVAEQW 511

Query: 245 RRSFIGIEMKQDYIDIATKRI 265
            R +I I+  +  + IA +R+
Sbjct: 512 GRRWITIDSSRVALAIARQRL 532



 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 66/176 (37%), Gaps = 23/176 (13%)

Query: 18  EWKDKIIKGNSISVLEKL-----PAKSVDLIFADPPYNLQL---------------NGQL 57
           +W +++I G+S+ V+  L      A  V +I+ DPPY ++                  + 
Sbjct: 185 DWSNRLILGDSLQVMTSLSRREALAGQVQMIYLDPPYGIKFSSNWQNEVGKRDVKEKDED 244

Query: 58  YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
              +  ++ A  D+W       +Y  + +  LL  R +L   G+++V  S  N+ R+  +
Sbjct: 245 LSREPEMIRAYRDTW--TLGVHSYLTYLKQRLLLARELLTDTGSIFVQISDENLHRVRAV 302

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
           +  + F   N I                    + L+W +       Y   Y A  A
Sbjct: 303 MDEV-FGPENFIGQIGVQKTGGLSADFLITTVDYLLWYAKERTRAKYRQLYLARTA 357


>gi|259649346|dbj|BAI41508.1| DNA methylase [Lactobacillus rhamnosus GG]
          Length = 643

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 90/249 (36%), Gaps = 29/249 (11%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPD------ 61
           +N+N     K+    G+++ VL  L       +D+I+ DPPYN   +G +Y         
Sbjct: 85  QNKNEGKNSKNLFFTGDNLEVLRHLQNNYQNKIDVIYIDPPYNTGSDGFVYPDSFEYSDD 144

Query: 62  --HSLVDAVTDSWDKFSSFE------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
               + D   D  ++  S +      A+  F    L+  + +L  +G ++V    +   +
Sbjct: 145 QLERMFDIDDDQVERLKSIQGKSSHSAWLTFMLPRLILAKGLLSDSGVIYVSIDDNEQAQ 204

Query: 114 IGTMLQNLNFWI--LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY------- 164
           +  +  ++   I  L D++W+ +    N      +  + TL +A    K   +       
Sbjct: 205 LKLLCDDIFGEINFLADVIWKHTQQSKNDEPFFARMYNHTLAYAKNINKLNPFFLKRTSK 264

Query: 165 -TFNYDALKAANEDVQMRSDWLIPICSGSERLR--NKDGEKLHPTQKPEALLSRILVSST 221
              NY      +       D   P    + R      +G+ + P +         +    
Sbjct: 265 DNINYSNPDNDSNGAWRAGDVRSPNLRATLRYNITAPNGKTIFPPKNGWRWSKDTINEKI 324

Query: 222 KPGDIILDP 230
           K G+++  P
Sbjct: 325 KSGEVVFKP 333



 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 6/68 (8%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIE 252
           DG     T KP  L+ R L         +LD F GS T+     +L       R FI  +
Sbjct: 376 DGVSPFGTPKPVELIKRFLELQNDDDATVLDFFAGSSTTAEAVMQLNVEDGGHRKFIMAQ 435

Query: 253 MKQDYIDI 260
           + +    I
Sbjct: 436 LPEKTYHI 443


>gi|219871906|ref|YP_002476281.1| Type III restriction-modification system EcoPI enzyme mod (M.EcoPI)
           (EcoPI methyltransferase) [Haemophilus parasuis SH0165]
 gi|219692110|gb|ACL33333.1| Type III restriction-modification system EcoPI enzyme mod (M.EcoPI)
           (EcoPI methyltransferase) [Haemophilus parasuis SH0165]
          Length = 640

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 64/140 (45%), Gaps = 20/140 (14%)

Query: 2   SQKNSLAINENQNSIF-EWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQL 57
             +  L+ N + N+   + ++ +I+G++++VL+ L     K + +I+ DPPYN   +G +
Sbjct: 61  ENRTLLSANHSHNANNLDSQNVLIQGDNLAVLKHLREAYRKQIKMIYIDPPYNTGSDGFV 120

Query: 58  YRPDHSL-------VDAVTDSWDKF---------SSFEAYDAFTRAWLLACRRVLKPNGT 101
           Y+ D          +   ++ + ++         SS  A+  F    L   R +LK +G 
Sbjct: 121 YQDDRKYTPEQIAQITGESEEYAEYIHGFINAKASSHSAWLTFMYPRLKLARELLKDDGV 180

Query: 102 LWVIGSYHNIFRIGTMLQNL 121
           +++    +   ++  +   +
Sbjct: 181 IFISIDDNEQAQLKLLCDEI 200



 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 20/112 (17%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL----- 244
           +G+ +L+    EK+ P  KP  LL   +       D++LD F GSGT+     +L     
Sbjct: 381 NGTTQLKQLFDEKVFPNPKPLELLVDFIQLGVNDNDLVLDFFAGSGTTAHAVMQLNSEDN 440

Query: 245 -RRSFIGIEMKQ--------------DYIDIATKRIASVQPLGNIELTVLTG 281
             R FI +++ +                 +I   RI         E     G
Sbjct: 441 GNRKFICVQLDEPVKPKSEAEKAGFNTIFEITKARIQKSIEKIKAENPDFNG 492


>gi|116494139|ref|YP_805873.1| adenine specific DNA methylase Mod [Lactobacillus casei ATCC 334]
 gi|116104289|gb|ABJ69431.1| Adenine specific DNA methylase Mod [Lactobacillus casei ATCC 334]
          Length = 462

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 2/79 (2%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           G+E L+     K+    KPE LL  I+   +  GD +LD   GS T+ AVA K+ R FIG
Sbjct: 259 GTEELQKLFDGKVFSFPKPENLLKTIIEIGSNAGDTVLDFHMGSATTQAVAMKMHRHFIG 318

Query: 251 IEMKQDYID-IATKRIASV 268
           IE + DYI+ ++  R+  V
Sbjct: 319 IE-QMDYINTVSVPRLQKV 336



 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 61/173 (35%), Gaps = 15/173 (8%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           L+K  +  +++I+ DPPYN   +   Y              DKF +   +  F +  L  
Sbjct: 7   LKKKYSNKINMIYIDPPYNTGSDSFAY-------------NDKF-NESTWLTFMKNRLEV 52

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
            + +L  +G ++V    +    +  ++  +        +   S P     G   Q     
Sbjct: 53  SKELLTDDGVIFVSIDRNEFAELKVLMDEVFENSYLGTMINVSTPNGRDYGSFAQTHDYI 112

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
            ++A      K  T +    K   +D   +  +L P+ + +      +   L+
Sbjct: 113 HVYAKNIDMVKTNTLDVSEDKFKLQDEISKF-YLHPLFNSNSAFSKDNRPNLY 164


>gi|84685896|ref|ZP_01013792.1| DNA methylase, putative [Maritimibacter alkaliphilus HTCC2654]
 gi|84665989|gb|EAQ12463.1| DNA methylase, putative [Rhodobacterales bacterium HTCC2654]
          Length = 1059

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 71/185 (38%), Gaps = 25/185 (13%)

Query: 19  WKDKIIKGNSISVLEKL-----PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           W ++++ G+S+ V+  L         V +I+ DPPY ++         +   +   D  +
Sbjct: 257 WSNRLVAGDSLLVMNSLLTKESMGGKVQMIYIDPPYGIKYGSNFQPFTNKKPNQTNDKEE 316

Query: 74  KFSSF---------------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
             ++                 +Y  + R  L+  R +L P G+++V  S  N+  +  ++
Sbjct: 317 DLTAEPEMIRAFRDTWELGAHSYLTYLRDRLVLSRELLDPTGSVFVQISDENLHSVRALM 376

Query: 119 QNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
             +      +N I +R   P+     +   + ++ ++W +       +   YD  K+   
Sbjct: 377 DEVFGAENFMNIIAYRTKIPLGT---KYLASIYDYIVWFAKDKSQIKFRKLYDIRKSGEG 433

Query: 177 DVQMR 181
               +
Sbjct: 434 TQFNK 438



 Score = 70.0 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 44/86 (51%)

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           D+ +   +          +K +  +  E ++ R L+ +T PGD++LDP  G GT+  V++
Sbjct: 530 DFPVQEYANVWTTTQGASDKSYVVETSERVIERCLLMTTDPGDLVLDPTCGGGTTAFVSE 589

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASV 268
           K  R +I  +  +  I +A +R+ + 
Sbjct: 590 KWGRRWITCDTSRVAITLAKQRLMTA 615


>gi|156743960|ref|YP_001434089.1| putative RNA methylase [Roseiflexus castenholzii DSM 13941]
 gi|156235288|gb|ABU60071.1| putative RNA methylase [Roseiflexus castenholzii DSM 13941]
          Length = 483

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 6/96 (6%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
            P + P  L  + + + T PG+ +LDP  GSGT+   A  L R  IG ++    + +A  
Sbjct: 51  FPAKFPPQLPRKFIQALTLPGETVLDPMMGSGTTVLEAFLLGRRGIGFDIDPLAVMLAKA 110

Query: 264 RIASVQPLGNI--ELTVLTGKR----TEPRVAFNLL 293
           +++ +     +     +++  R    ++ RV +N +
Sbjct: 111 KVSPISHHDAVIWSREIISNARESFFSQKRVLYNEI 146


>gi|110005015|emb|CAK99346.1| hypothetical n-6 adenine specific dna methyltransferase c-terminal
           truncated protein [Spiroplasma citri]
          Length = 162

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 62/150 (41%), Gaps = 5/150 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPP--YNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K+I G+++  ++ L   SVDLI  DPP  YNL         ++ +  ++    +      
Sbjct: 8   KLINGDALEFIKTLENDSVDLILTDPPYLYNLSKRENEQINENRISKSINKYINALYDNN 67

Query: 80  AYDAF-TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
            +++F    +L    R+ K    L  +     I      ++  +  + + I+W K+NPMP
Sbjct: 68  LHNSFYINTYLDEFYRISKTKFMLIWMNRQQIIIDYLDWVRKKDM-LYDFILWNKTNPMP 126

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
                     +  +I++    +   Y  +Y
Sbjct: 127 TNNHIYQDKEYCMIIYSKKH-RIPNYKNDY 155


>gi|329667811|gb|AEB93759.1| Adenine specific DNA methylase Mod [Lactobacillus johnsonii DPC
           6026]
          Length = 659

 Score = 70.4 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 19/173 (10%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR-----PDH 62
           +NQ      ++    G+++ VL  L       +D+I+ DPPYN   +G +Y       D 
Sbjct: 85  QNQGEGENSQNLFFTGDNLEVLRHLQNNYQNKIDVIYIDPPYNTGSDGFVYPDSFEYSDD 144

Query: 63  SLVDAVTDSWDKF---------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
            L D      D+          SS  A+  F    L+  +R+L   G ++V    +    
Sbjct: 145 KLKDMFGLDDDQVERLKSIQGKSSHSAWLTFMYPRLVMAKRLLSDKGIIFVSIDDNESAD 204

Query: 114 IGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
           +  ++ ++          +W K+   P       +     L +   S   K Y
Sbjct: 205 LTMLMNSVFGEQQFKVQFIWTKTETPPALSNYSRRTTEYVLSFEKNSYGEKYY 257



 Score = 43.8 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 9/77 (11%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVS--STKPGDIILDPFFGSGTSGAVAKKLR--- 245
           G +RL   + + +    KP +L+  ++       P   ++D F GS T+     +L    
Sbjct: 382 GVKRLDELNLKNMFTNPKPTSLVKYLINIVGHEHPYITVMDFFAGSSTTADAVMQLNEED 441

Query: 246 ---RSFIGIEM-KQDYI 258
              R FI +++ ++ Y 
Sbjct: 442 GGHRKFIMVQLPEKTYH 458


>gi|210135686|ref|YP_002302125.1| type III R-M system methyltransferase [Helicobacter pylori P12]
 gi|210133654|gb|ACJ08645.1| type III R-M system methyltransferase [Helicobacter pylori P12]
          Length = 680

 Score = 70.4 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 59/156 (37%), Gaps = 17/156 (10%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSL--------VDAV 68
           K  +IKG+++  L+ L    ++ + +I+ DPPYN +    +Y  D S         +D  
Sbjct: 89  KHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNESFIYGDDFSQSNEEVLKTLDYS 148

Query: 69  TDSWD------KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
            +  D         S   + +F    LL  R +LK +G +++    +    +  +   + 
Sbjct: 149 KEKLDYIKNLFGLKSHSGWLSFMYPRLLLARDLLKQDGVIFISIDDNECANLKILCDEIF 208

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
                               + FQN +E ++  +  
Sbjct: 209 GEGNFLSSLTWLKGNAQNDAQYFQNNYENILVYAKH 244



 Score = 58.1 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 50/128 (39%), Gaps = 30/128 (23%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR---- 245
           +G++ + +   +K+    KP  L+SR++  ST  GDIILD F GSGT+     +      
Sbjct: 416 NGTKEVNDLFNQKIFNNPKPLKLISRLIELSTNEGDIILDFFAGSGTTAHAVLESNKSDY 475

Query: 246 -------------------RSFIG------IEMKQDYIDIATKRIASVQPLGNIELTVLT 280
                              R FI       I+  +   D     + S+ P    ++T   
Sbjct: 476 QKLSEGGGLFNGLNATFKERRFILVQLDEKIDKNKSAYDFCLNTLKSISP-SIFDITEER 534

Query: 281 GKRTEPRV 288
            KR   ++
Sbjct: 535 IKRAGAKI 542


>gi|163756649|ref|ZP_02163760.1| hypothetical protein KAOT1_00260 [Kordia algicida OT-1]
 gi|161323324|gb|EDP94662.1| hypothetical protein KAOT1_00260 [Kordia algicida OT-1]
          Length = 662

 Score = 70.4 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 73/177 (41%), Gaps = 24/177 (13%)

Query: 7   LAINENQNSIFEWKDK---IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP 60
           L  +E  N   E K+    +IKG+++ VL+ L     + V +I+ DPPYN   +G +Y  
Sbjct: 78  LKEDETFNQKEENKNSENLLIKGDNLEVLKHLSNAYYEKVKMIYIDPPYNTGSDGFVYAD 137

Query: 61  DHSLVDA----------------VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
           D                      +  +  K +S  A+  F    L   +++LK +G ++V
Sbjct: 138 DRKFTSEELQELAGVNEERAKRILDFTQSKSNSHSAWLTFMYPRLYIAKQLLKEDGVIFV 197

Query: 105 IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR-RFQNAHETLIWASPSPK 160
               + + ++  ++  +     N +     N  PN R        HE +++ S + +
Sbjct: 198 SIDDNEVAQLRLLMDEVFGE-ENFLGEFVVNSTPNARDYGHIGKMHEYVVFYSKNEQ 253



 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFI 249
           G+K+    KP  L+    +      D+ILD F GSGT+G    +L       R FI
Sbjct: 400 GKKVFSFPKPITLIKSFALIGLNQNDLILDFFAGSGTTGDAVMQLNSEDGGQRKFI 455


>gi|304317320|ref|YP_003852465.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778822|gb|ADL69381.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 266

 Score = 70.0 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 36/78 (46%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           + S  ER         +       +   I++  +K  DI+LDP  GSGT+   AK L R 
Sbjct: 13  VWSFPERGDWATHNGKYRGNFAPQVPRNIILRYSKENDIVLDPMVGSGTTLVEAKLLNRR 72

Query: 248 FIGIEMKQDYIDIATKRI 265
            IG ++  D IDI  + +
Sbjct: 73  GIGFDINPDAIDITKRNL 90



 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 44/161 (27%), Gaps = 16/161 (9%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           L+++   S+DLI   PPY   +       +  L +         S  + +       +  
Sbjct: 114 LKEIDDNSIDLIITHPPYLNIIKYSNGNIEGDLSN--------ISGVKKFLNELEKGVSE 165

Query: 92  CRRVLKPNGTL-WVIGSYHNI-------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
             RVLK N     +IG            F +  +     F +  DI+  + N        
Sbjct: 166 LFRVLKNNRYCAILIGDTRKSGHYVPLAFYVMQLFLKNGFILKEDIIKVQHNCKSTPYWE 225

Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
                +   +               + +          + W
Sbjct: 226 SQVEKYNFYLIMHEHLFVFRKPDIDEDVSKVRYSTWQGNIW 266


>gi|296531909|ref|ZP_06894712.1| DNA methylase N-4/N-6 [Roseomonas cervicalis ATCC 49957]
 gi|296267775|gb|EFH13597.1| DNA methylase N-4/N-6 [Roseomonas cervicalis ATCC 49957]
          Length = 599

 Score = 70.0 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 45/92 (48%)

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
             ++   D+     +          +K++  Q    ++ R ++ +T PGD++LDP  GSG
Sbjct: 59  RFMRFPEDFPASPITNVWDDTAGATDKVYVVQTATKIIQRCMLMTTDPGDLVLDPTCGSG 118

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           T+  VA++  R +I  +  +  + +A  R+ +
Sbjct: 119 TTAFVAEQWGRRWITTDTSRVALALARTRLMA 150


>gi|315453689|ref|YP_004073959.1| Modification methylase BamHI [Helicobacter felis ATCC 49179]
 gi|315132741|emb|CBY83369.1| Modification methylase BamHI [Helicobacter felis ATCC 49179]
          Length = 107

 Score = 70.0 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 33/48 (68%)

Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
            ST+ G+++LDPF G+GT+   AK+L+R FIG E    Y  I+T+++ 
Sbjct: 1   MSTEEGEVVLDPFLGTGTTALAAKRLQRHFIGFEKDAQYCQISTEKLK 48


>gi|300215356|gb|ADJ79769.1| Adenine specific DNA methylase Mod [Lactobacillus salivarius CECT
           5713]
          Length = 417

 Score = 70.0 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 2/63 (3%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IATKRI 265
           +KPEA++ + +   T   D++LD F GS T+ AVA K+RR FIGIE + DYI+ IA  R+
Sbjct: 233 KKPEAIIKKYIDIFTDEEDLVLDFFMGSATTQAVAMKMRRHFIGIE-QMDYINTIAVPRL 291

Query: 266 ASV 268
             V
Sbjct: 292 QKV 294


>gi|185179129|ref|ZP_02964848.1| type III restriction-modification system:Methylase [Ureaplasma
           urealyticum serovar 5 str. ATCC 27817]
 gi|225551466|ref|ZP_03772412.1| type III restriction-modification system:Methylase [Ureaplasma
           urealyticum serovar 8 str. ATCC 27618]
 gi|184208967|gb|EDU06010.1| type III restriction-modification system:Methylase [Ureaplasma
           urealyticum serovar 5 str. ATCC 27817]
 gi|225379281|gb|EEH01646.1| type III restriction-modification system:Methylase [Ureaplasma
           urealyticum serovar 8 str. ATCC 27618]
          Length = 528

 Score = 70.0 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 75/244 (30%), Gaps = 32/244 (13%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKL-----------PAKSVDLIFADPPYN 50
             +    +N+  N      + +I G +  VL+ L                D+I+ DPPYN
Sbjct: 73  KNEQLSFMNDAHNLFKNDTNSLIIGENYDVLKNLLVLERERETSGRDAYYDVIYIDPPYN 132

Query: 51  L---QLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
               + +G  +     +  +     DKF S   +       L   + +LK +G ++V   
Sbjct: 133 TEASKTDGNNFSEKDDVAASKFVYRDKF-SRNGWLNMMNERLKLAKNLLKNDGVIFVSID 191

Query: 108 YHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
            +    +  ++  +            + N  P    +     H+ ++    +   K    
Sbjct: 192 DNEQAYLKVLMDEIFGEENFTCNFVWEKNYAPKNNNKFVSVNHDYILCYCKNKILKNKFN 251

Query: 167 NYDALKAANEDVQMRSDWLIP----------------ICSGSERLRNKDGEKLHPTQKPE 210
                +  N     + D                    I  G + L  K+   L+  +K  
Sbjct: 252 RNQRTEKNNRLYFYKDDRGFYKSSDLTKKGSNNIYDIIWDGKKYLCPKNSSWLYNEEKMY 311

Query: 211 ALLS 214
            L+ 
Sbjct: 312 ELIK 315



 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 20/45 (44%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
                T KP  L+  ++  ++     ILD F GSGT+G     L 
Sbjct: 368 NHNFNTPKPIELIKYLINIASTNNARILDFFAGSGTTGHAVLALN 412


>gi|332884375|gb|EGK04641.1| hypothetical protein HMPREF9456_03410 [Dysgonomonas mossii DSM
           22836]
          Length = 266

 Score = 70.0 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 6/98 (6%)

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTK-----PGDIILDPFFGSGTSGAVAKKLRRSF 248
           R   +  + +HPTQKP  L+ R+L    K     P  ++LD F GS ++           
Sbjct: 126 RQIGERYKAIHPTQKPPRLIERLLALVCKIEPNKPKPLVLDTFRGSASTDIACMNFGVDC 185

Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
           I  E+  +Y D   +R  S   L  + L  +  K   P
Sbjct: 186 ISFEIDDEYFDEGEER-KSEHNLEQVPLMFINNKLYRP 222


>gi|322433745|ref|YP_004215957.1| DNA methylase N-4/N-6 domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321161472|gb|ADW67177.1| DNA methylase N-4/N-6 domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 935

 Score = 70.0 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 71/176 (40%), Gaps = 30/176 (17%)

Query: 17  FEWKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLN----------------- 54
             W +++I G+S+ V+  L         V  I+ DPPY ++ N                 
Sbjct: 141 QHWSNRMILGDSLQVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGNV 200

Query: 55  GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI 114
           G + R +   V A  D+W       +Y ++ R  L+A R +L  +G+++V     N  R+
Sbjct: 201 GHITR-EPEQVKAFRDTW--RDGIHSYLSYLRDRLVAARDMLTDSGSIFVQIGDENSHRV 257

Query: 115 GTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
             +L  +      +++I + K+  +     +   +  + L+W +       +   Y
Sbjct: 258 RALLDEVFGPDNAVSEIAFSKTTGLG---AKFLSSRFDFLLWYAKDKDQAKFRRPY 310



 Score = 69.2 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 45/84 (53%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +KL+  Q     + R ++ +T PGD++LDP  GSG++  VA++  R +I ++  +  + +
Sbjct: 431 DKLYVVQTGTKTIQRCILMTTDPGDLVLDPTCGSGSTAYVAEQWGRRWITVDTSRVALAL 490

Query: 261 ATKRIASVQPLGNIELTVLTGKRT 284
           A  R+   +    +    + G+R 
Sbjct: 491 ARARVMGARYAYYLLTDSIEGRRK 514


>gi|218234182|ref|YP_002365705.1| adenine specific DNA methylase [Bacillus cereus B4264]
 gi|218162139|gb|ACK62131.1| adenine specific DNA methylase [Bacillus cereus B4264]
          Length = 531

 Score = 70.0 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 67/218 (30%), Gaps = 14/218 (6%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQL 57
           ++ K S       N     ++KII+G+++  L+ L       +  I+ DPPYN      +
Sbjct: 24  LNHKYSFNEGGLSNDEGSSENKIIRGDNLEALKALLPQYEGKIKCIYIDPPYNTGNEKWI 83

Query: 58  Y-------RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL-KPNGTLWVIGSYH 109
           Y       +    L D V    +  S  + +       L    ++L    G +++    +
Sbjct: 84  YNDNVNHPKIKKWLGDVVGKEGEDLSRHDKWLCMIYPRLKLLNKLLDTKKGVIFISIDEN 143

Query: 110 NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
               +  +   +                     +   + HE ++  +   K    T N  
Sbjct: 144 EYANLKLICNEIFGSNCYVATIAWQKRYSRENRQAIGDVHEYILIYAKDKKYFKETRNLI 203

Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
            +      V    +       G  R      +  H T+
Sbjct: 204 EMDEKQSKVYKNPN---NDPKGRWRPIPMTAQAGHATK 238



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 75/214 (35%), Gaps = 18/214 (8%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL--HPTQKPE 210
           I+   +  ++  T  Y +               +     +++       K     T KP 
Sbjct: 276 IYFGKNNNSQPNTIRYLSEVDGVVPWTWWPHEEVGNTDSAKKEIYSILGKGTQFDTPKPS 335

Query: 211 ALLSRILVSST--KPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYIDIAT 262
            L+ RI+  +T     DIILD F G+GT+      +       R FI +EM+     I  
Sbjct: 336 QLIERIIRIATSKDENDIILDSFSGTGTTAHAVLNINKKDGGNRKFILVEMEDYAETITA 395

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           +R+  V   G  ++    G+ +   +  +LL+E   I    +           +    +L
Sbjct: 396 ERVKRVIS-GYSDIEGTGGEFSFYDLGESLLLENHYIN-KNVDIKKIREYVFYLETKQSL 453

Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLG 356
           +          +  +    E  N   ++Y+EK  
Sbjct: 454 VEEV------SMDNQYYLGEKNNNAYYFYYEKDR 481


>gi|224438416|ref|ZP_03659341.1| pseudogene (putative type III restriction-modification system
           modification protein) [Helicobacter cinaedi CCUG 18818]
 gi|313144855|ref|ZP_07807048.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313129886|gb|EFR47503.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 623

 Score = 70.0 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 63/173 (36%), Gaps = 23/173 (13%)

Query: 6   SLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDH 62
             A  +N NS    K+ +IKG+++ VL+ L       V +I+ DPPYN      +Y  + 
Sbjct: 90  HNAQPQNANS----KNVLIKGDNLEVLKHLKNAYYRKVKMIYIDPPYNTGNGDFIYNDER 145

Query: 63  SLV----------------DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
           S                    +  +    S+  A+ +F    L   R++L+ +G +++  
Sbjct: 146 SFTPQSLAQMANIELEEAGSILNLTLKNSSTHSAWLSFMYPRLYIARQLLRDDGVIFISI 205

Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
             +    +  +   +         +         + + F   HE ++    + 
Sbjct: 206 DDNEQANLKLLCDEIFGEDNFVSCFVWQKKSGGGQAKYFYEGHEYVLIYCKNK 258



 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 61/164 (37%), Gaps = 21/164 (12%)

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           + +  P           +    A     +   W     + +E+L    G+ +    KP  
Sbjct: 338 IYFLKPYNDKFNLVCRNNENNQALMYSIVSGVWTSDGNTENEQLF---GKLVFNDPKPVN 394

Query: 212 LLSRILVSST---KPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQD------ 256
           LL +++ S+T      DIILD F GSGT+     +L       R FI +++ +       
Sbjct: 395 LLKQLIQSATMQGNSNDIILDFFAGSGTTAQAVMELNAQDNGNREFILVQLDEAIDKSKS 454

Query: 257 --YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGL 298
               +     + S  P    ++T    KR   ++A N  ++ G 
Sbjct: 455 KTAYEFCKNELGSENPTI-FDITKERIKRASAKIAQNSNLDLGF 497


>gi|54303973|emb|CAG24072.1| restriction endonuclease EcoP15I, modification subunit [Escherichia
           coli]
          Length = 644

 Score = 70.0 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 75/197 (38%), Gaps = 23/197 (11%)

Query: 1   MSQKNSLAINENQNSIFEWKDK---IIKGNSISVLEKL---PAKSVDLIFADPPYNLQLN 54
           +  K  LA ++  N   E K+    +IKG+++ VL+ +    A+ V +I+ DPPYN   +
Sbjct: 72  LPPKTLLAEDKTHNQQEENKNSQHLLIKGDNLEVLKHMVNAYAEKVKMIYIDPPYNTGKD 131

Query: 55  GQLYRPDHS--------LVDAVTDSWDKF--------SSFEAYDAFTRAWLLACRRVLKP 98
           G +Y  D          L     D   +         SS  A+  F    L   R +++ 
Sbjct: 132 GFVYNDDRKFTPEQLSELAGIDLDEAKRILEFTTKGSSSHSAWLTFIYPRLYIARELMRE 191

Query: 99  NGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
           +GT+++   ++   ++  +   +     +       N   +         HE +I  + +
Sbjct: 192 DGTIFISIDHNEFSQLKLVCDEIFGEQNHVGDLVWKNAT-DNNPSNIAVEHEYIIVYTKN 250

Query: 159 PKAKGYTFNYDALKAAN 175
            +     +  +     N
Sbjct: 251 KEQLISEWKSNISDVKN 267



 Score = 41.1 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
           K   L+  ++  +     I+LD F GSGT+      L         FI +++ +
Sbjct: 418 KTIKLVEDLISFACDGEGIVLDFFAGSGTTAHTVFNLNNKNKTSYQFITVQLDE 471


>gi|138894944|ref|YP_001125397.1| Type III restriction-modification systemmethyltransferase
           [Geobacillus thermodenitrificans NG80-2]
 gi|134266457|gb|ABO66652.1| Type III restriction-modification systemmethyltransferase
           [Geobacillus thermodenitrificans NG80-2]
          Length = 474

 Score = 70.0 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 58/191 (30%), Gaps = 5/191 (2%)

Query: 24  IKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSFE 79
           I+G+++  L+ L      SV +I+ DPPYN                A +    ++     
Sbjct: 90  IEGDNLEALKLLRASHEGSVQMIYIDPPYNTGKAFTYKDNWRKRKRAASHVEQEEARVHA 149

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMP 138
            +       L   + +L   G +++         +  M   +            +    P
Sbjct: 150 GWLNMMYPRLWMAKALLAETGAIFISIDDTEQANLKKMCDEIFGEHNFVATFIWQRAFSP 209

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
               +     H+ ++  + +     +       +A        +D   P  SG   +   
Sbjct: 210 VNMNKFASRNHDFILCYAKNIDRLAWYGLPRDSEANGRYANPDNDPRGPWMSGDLSVGPP 269

Query: 199 DGEKLHPTQKP 209
             EK++    P
Sbjct: 270 IPEKIYDIVTP 280



 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIE 252
           DG  +    KP  L+ R++  +TK  D+ILD F GS T+     +        RSFI ++
Sbjct: 358 DGVAVMDYPKPVKLIQRMVALTTKDDDVILDFFSGSATTAHAVMQQNAEDGGQRSFIMVQ 417

Query: 253 MKQDYIDIA 261
           + +  +  +
Sbjct: 418 LPERMVKTS 426


>gi|257453506|ref|ZP_05618796.1| hypothetical protein ENHAE0001_1558 [Enhydrobacter aerosaccus SK60]
 gi|257448964|gb|EEV23917.1| hypothetical protein ENHAE0001_1558 [Enhydrobacter aerosaccus SK60]
          Length = 542

 Score = 69.6 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 54/161 (33%), Gaps = 16/161 (9%)

Query: 18  EWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLY-------RPDHSLVDA 67
           E  +KII G+++  L+ L       VD I+ DPPYN    G +Y       +    L   
Sbjct: 19  ESGNKIIYGDNLEALKSLLPFYEGKVDCIYIDPPYNTGEEGWVYNDNVNHPKIKKWLGQV 78

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN----- 122
           V    +  S  + +       L   +++L   G +++    +    +  +   +      
Sbjct: 79  VGKQSEDLSRHDKWLCMMYPRLQLLKQLLSDTGVIFISIDDNEQANLKLICDEIFGLKAF 138

Query: 123 -FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
              I   +   +   + + +        E ++  S      
Sbjct: 139 ITTIHCQMSTTQGMKVKSAQNGNIVKNAEYILCYSKDGHKN 179



 Score = 60.4 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 9/129 (6%)

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
            N++  +        + G T N++      +   +R DW          +  +       
Sbjct: 285 MNSNGNIRQLLRLKNSWGKTDNFNQDVGLRK---IRGDWWEGFYIDMGNVSKEADTVFAN 341

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYID 259
            +KP  L+S++L  S+    IILD F GSGT+      +       R FI IE++    D
Sbjct: 342 GKKPVRLISQLLNMSSNRDSIILDSFAGSGTTAHAVLNINKQDGGNRKFILIELEDYAND 401

Query: 260 IATKRIASV 268
           I  +R+  V
Sbjct: 402 ITAERVKRV 410


>gi|260219903|emb|CBA26901.1| hypothetical protein Csp_G38950 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 629

 Score = 69.6 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 65/172 (37%), Gaps = 12/172 (6%)

Query: 19  WKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
            ++ +I+G++   L  L +     V +I+ DPPYN          D    D    + D++
Sbjct: 71  HRNLVIEGDNFDSLRLLRSTHAGKVRVIYIDPPYNTGNK------DWVYNDNYVGANDRW 124

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF-WILNDIVWRKS 134
              + +  F    L   R +L  +G + V  +  N  R+  ++  +     L  IVWR  
Sbjct: 125 RHSQ-WLEFLYQRLSLARELLTADGVILVSINDENRSRLELLMDEVFPGRRLGSIVWRTR 183

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
                 +       HE ++    +  A    F+      +N D   R DW I
Sbjct: 184 QGSNADQLCFLSADHEHVLVYGNAGFAFQ-GFDKSYEMYSNIDNDPRGDWRI 234



 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 65/171 (38%), Gaps = 31/171 (18%)

Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRF--QNAHETLI-WASPSPKAKGYTFNYDALK 172
            ML+     +   +        P F+  +   +N  + L  W  PS +   Y    +   
Sbjct: 331 LMLRRDLPDLEQWVGKPVGFGRPQFKRYKADLRNQTQPLSSWIVPSFEEGTYEAEANLSS 390

Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
           A N++             G+ ++    G++     KP +L+  +L  +T+  DI+LD F 
Sbjct: 391 ATNQE-------------GARQVAQIFGDRAFNYAKPASLIKGLLSQATRKTDIVLDFFA 437

Query: 233 GSGTSGAVAKKLR------RSFIGI--------EMKQDYI-DIATKRIASV 268
           GSGT+G     L       R FI          E  ++   D+  +R+  V
Sbjct: 438 GSGTTGQAVLDLNAEDGGQRQFILCSSTEATTKEPDKNLCRDVCAERLRRV 488


>gi|330723411|gb|AEC45781.1| adenine DNA methyltransferase subunit [Mycoplasma hyorhinis MCLD]
          Length = 604

 Score = 69.6 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 66/194 (34%), Gaps = 12/194 (6%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKL-------PAKSVDLIFADPPYNLQLNG 55
           +K+      +       ++ +I G +  VL+ L          + DLI+ DPPYN Q   
Sbjct: 81  EKDEKLSFSSSKMKDNLQNSLIIGENYDVLKNLIGVEREREDANFDLIYIDPPYNTQKTS 140

Query: 56  QLYRP--DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
                  D  +        DKFS    +       L   +++LK +G ++V    +    
Sbjct: 141 DDGNNLTDDEITADKFIYRDKFSRT-GWLNLLNERLKLAKQLLKEDGVIFVSIDDNEQAY 199

Query: 114 IGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
           +  ++  +      + +++W  +           QN    L+++    K K    N    
Sbjct: 200 LKVLMDEIFGEENFVVNLIWISAWGSKQDAKYFSQNHEYILVYSKNIEKLKIKKINIAEN 259

Query: 172 KAANEDVQMRSDWL 185
               +  +    W 
Sbjct: 260 SDQWKWNEKIQKWE 273



 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 45/122 (36%), Gaps = 9/122 (7%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN-KDGEKLHPTQKPEA 211
           I  S     +   FN    K        +         GS  LR+  + +      KP  
Sbjct: 396 IPNSKKQNPRSVVFNSTLNKLVENTDNHKQIQRASTSDGSLMLRSIFNFDSFFDFPKPVN 455

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYI--DIATK 263
           L+  I+         +LD F GSGT+G    +L       RSF+ +   ++ I  +I  +
Sbjct: 456 LIKYIIDLFPSKNTRVLDFFAGSGTTGQAVLELNKEDGGSRSFVLVTNNENSIGQNITYE 515

Query: 264 RI 265
           R+
Sbjct: 516 RL 517


>gi|113971114|ref|YP_734907.1| DNA methylase N-4/N-6 domain-containing protein [Shewanella sp.
           MR-4]
 gi|113885798|gb|ABI39850.1| DNA methylase N-4/N-6 domain protein [Shewanella sp. MR-4]
          Length = 622

 Score = 69.6 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 56/164 (34%), Gaps = 14/164 (8%)

Query: 5   NSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYR-- 59
            SL +     S+ +  + II G+++  L+ L       VD IF DPPYN    G  Y   
Sbjct: 30  KSLPLEGKSASLDD--NLIIHGDNLEALKALLPTHAGKVDCIFIDPPYNTGNEGWCYNDN 87

Query: 60  ------PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
                  +     A     +     + +       L+  + +L  +G++W+    + +  
Sbjct: 88  VRSPLMQEWLKKSANPVDKEDLERHDKWLCMMWPRLMLLKELLSNDGSIWLTLDDNEVNS 147

Query: 114 IGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
              ++  +        +    +N             HE ++  S
Sbjct: 148 AKLLMDEVFGDDKFVGLFVVVNNLKGRNDKEHIAITHEYILVYS 191



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 48/136 (35%), Gaps = 16/136 (11%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYID 259
             K  A + R +  S     I+LD F GSGT+     +        R FI +E  +DY D
Sbjct: 348 APKTLAHVQRCIELSIGREGIVLDSFAGSGTTAHAVLEANKKDNGSRKFILVEC-EDYAD 406

Query: 260 IA----TKRIASVQPLGNIELTVLTGKRTEPRVAFN---LLVERGLIQPGQILTNAQGNI 312
                  +R+ +  P    +   L  ++    V       L+E+  I   +   +   + 
Sbjct: 407 TLTAERVRRVINGYPFKGNQKQELLSEKITWSVFEKKHAELLEK--IAKVEEKHSKDFDK 464

Query: 313 SATVCADGTLISGTEL 328
                 DG L    E 
Sbjct: 465 IKKELKDGVLTVTGER 480


>gi|157412223|ref|YP_001481566.1| putative DNA methyltransferase [Escherichia coli APEC O1]
 gi|99867248|gb|ABF67893.1| putative DNA methyltransferase [Escherichia coli APEC O1]
          Length = 416

 Score = 69.6 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 98/293 (33%), Gaps = 69/293 (23%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           GN+ +    +  + + L    PPY L  N + Y       +            +AY  + 
Sbjct: 115 GNAYAFFSNI-TEQIHLCLTSPPY-LLRNSRDYGHGGGRGE------------QAYIDWL 160

Query: 86  RAWLLACRRVLKPNGTL--------WVIGSYHNIFRIG----TMLQNLNFWILNDIVW-- 131
              L    + L P  ++        +  G       +      +   L   +++ + W  
Sbjct: 161 LRILEPIVKQLVPGASVALNITQDSFNRGRPSRSLYLERLTLALCDKLGLELMDRLQWVN 220

Query: 132 --RKSNPMPNFRGRRFQ--NAHETLIWASP-------------SPKAKGY---------- 164
             +  +P      +R Q  +++E ++W +               P +  +          
Sbjct: 221 RSKPPSPTHWACKQRVQLCSSYEPVLWFTNDASKVRSNNLRVLQPHSDQHLKLQAAGGEN 280

Query: 165 ---TFNYDALKAANEDVQMRSDWLIPICS-----------GSERLRNKDGEKLHPTQKPE 210
               +   A +  +     +++  IP  +               +  + G  LH    P 
Sbjct: 281 RTTFYGDGAYQLKSGSFGNKTEGTIPKNTLFYGNSCADTRFCHSIARELGFPLHGATSPT 340

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
            L + ++   T+PGD+++DPF G       A++L R ++  +   +++ I+  
Sbjct: 341 RLAAFLIEFLTEPGDLVVDPFAGLHKVPIAAERLGRRWLATDKIMEWLAISRN 393


>gi|320458356|dbj|BAJ68977.1| hypothetical phage protein [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 392

 Score = 69.6 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 29/56 (51%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           LHPT KP  L+  ++   T P  ++L+PF GSG +    +      +  EM  DY+
Sbjct: 296 LHPTVKPLELMRWLVRLVTPPDGLVLEPFAGSGATLEACRIEDVRCVAAEMDSDYV 351



 Score = 39.6 bits (91), Expect = 0.87,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 26/62 (41%)

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
           AF         RVLKP G +    +     R+   +++  F I + I W  ++ MP+   
Sbjct: 11  AFDVILWKDILRVLKPGGHVAAFAASRTYHRLACAIEDAGFEIRDQIDWVYASGMPHGSD 70

Query: 143 RR 144
            R
Sbjct: 71  AR 72


>gi|32455951|ref|NP_862409.1| putative DNA modification methyltransferase [Micrococcus sp. 28]
 gi|18025397|gb|AAK62505.1| putative DNA modification methyltransferase [Micrococcus sp. 28]
          Length = 398

 Score = 69.6 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 54/154 (35%), Gaps = 13/154 (8%)

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
           W+           M  + GR    +         +       ++    +  N    + + 
Sbjct: 212 WLWYWPPGAAIEAMAAYCGRNGLESGRPYFSLDGNRPLTADEWDRLRHR-WNHVHGLTNV 270

Query: 184 WLIPICSGSERLRNK------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
           W  P    SER++                   H  QKP  L+ R++ ++T PGD++ +PF
Sbjct: 271 WNRPALHDSERMKGSLRRSAPRVYRPTKASTTHLNQKPLELMERLVHATTDPGDVVWEPF 330

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
            G  T    A    R     EM   + ++A +R+
Sbjct: 331 GGLATGSVAAVATGRDAYVAEMDPFFAELAGERL 364


>gi|255020805|ref|ZP_05292861.1| DNA methylase, putative [Acidithiobacillus caldus ATCC 51756]
 gi|254969596|gb|EET27102.1| DNA methylase, putative [Acidithiobacillus caldus ATCC 51756]
          Length = 970

 Score = 69.2 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 62/168 (36%), Gaps = 24/168 (14%)

Query: 19  WKDKIIKGNSISVLEKL-----PAKSVDLIFADPPYNLQLNGQL---------------- 57
           W++++I G+S+  +  L      A  V +I+ DPPY ++                     
Sbjct: 255 WQNRMILGDSLVAMNSLLEFEGMAGQVQMIYIDPPYGVKFGSNFQPFVRKRDVKHGGDDD 314

Query: 58  YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
              +  +V A  D+W+      +Y  + R  L+  + +L   G+L++  S  N+     +
Sbjct: 315 ITREPEMVKAYRDTWE--LGLHSYLTYLRDRLMVAKELLHETGSLFLQISDENLHHCREL 372

Query: 118 LQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
           L  +        ++             R     + LIW + +P    Y
Sbjct: 373 LDEVFGEDHFVSLISFAKAGGGLESTSRVSARLDYLIWYAKNPDHLKY 420



 Score = 68.5 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 10/133 (7%)

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           N      GRR+        W  P             +   NE   ++     P  S S  
Sbjct: 485 NGKVYTSGRRW--------WGLPKESLLKVIAVGRTVTTENEIRFVKYLSDFPFRSMSNL 536

Query: 195 LRNKDG--EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
                G    L+  Q    ++ R ++  T PGD++LDP  GSGT+  VA++  R +I I+
Sbjct: 537 WDRLGGAANPLYVVQTNPTVVQRCMLMCTDPGDLVLDPTCGSGTTAYVAEQWGRRWITID 596

Query: 253 MKQDYIDIATKRI 265
             +  + +A +R+
Sbjct: 597 TSRVPLALARQRL 609


>gi|135253|sp|P12364|T3MO_ECOLX RecName: Full=Type III restriction-modification system EcoP15I
           enzyme mod; Short=M.EcoP15I; AltName: Full=EcoP15I
           methyltransferase
 gi|42237|emb|CAA29616.1| unnamed protein product [Escherichia coli]
          Length = 645

 Score = 69.2 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 75/197 (38%), Gaps = 23/197 (11%)

Query: 1   MSQKNSLAINENQNSIFEWKDK---IIKGNSISVLEKL---PAKSVDLIFADPPYNLQLN 54
           +  K  LA ++  N   E K+    +IKG+++ VL+ +    A+ V +I+ DPPYN   +
Sbjct: 72  LPPKTLLAEDKTHNQQEENKNSQHLLIKGDNLEVLKHMVNAYAEKVKMIYIDPPYNTGKD 131

Query: 55  GQLYRPDHS--------LVDAVTDSWDKF--------SSFEAYDAFTRAWLLACRRVLKP 98
           G +Y  D          L     D   +         SS  A+  F    L   R +++ 
Sbjct: 132 GFVYNDDRKFTPEQLSELAGIDLDQAKRILEFTTKGSSSHSAWLTFIYPRLYIARELMRE 191

Query: 99  NGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
           +GT+++   ++   ++  +   +     +       N   +         HE +I  + +
Sbjct: 192 DGTIFISIDHNEFSQLKLVCDEIFGEQNHVGDLVWKNAT-DNNPSNIAVEHEYIIVYTKN 250

Query: 159 PKAKGYTFNYDALKAAN 175
            +     +  +     N
Sbjct: 251 KEQLISEWKSNISDVKN 267



 Score = 41.1 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
           K   L+  ++  +     I+LD F GSGT+      L         FI +++ +
Sbjct: 419 KTIKLVEDLISFACDGEGIVLDFFAGSGTTAHTVFNLNNKNKTSYQFITVQLDE 472


>gi|83589722|ref|YP_429731.1| hypothetical protein Moth_0871 [Moorella thermoacetica ATCC 39073]
 gi|83572636|gb|ABC19188.1| conserved hypothetical protein [Moorella thermoacetica ATCC 39073]
          Length = 281

 Score = 69.2 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 10/122 (8%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            K H   KP  +++ I+   TK G+++LDPF G G +   A    R+ +G E+   ++DI
Sbjct: 38  RKKHGAMKPPEVMAEIIRFFTKKGELVLDPFAGVGGTLLGAALAGRASLGFELDPRWVDI 97

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPG---QILTNAQGNISATVC 317
                 ++Q    I   V   +R E  V+    V+ G ++ G   ++L   +G   A V 
Sbjct: 98  ----YRTIQRDFVIAGGVF--RRREETVSTGTEVD-GEMRQGDCLELLRQLEGESVAAVI 150

Query: 318 AD 319
            D
Sbjct: 151 TD 152



 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 47/135 (34%), Gaps = 13/135 (9%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV----TDSWDKFSSFEA 80
           +G+ + +L +L  +SV  +  DPPY +  +G    P  +  +      +    +    E+
Sbjct: 131 QGDCLELLRQLEGESVAAVITDPPYGIN-HGARGFPGETNFNMTSPRRSGDLGQAPDLES 189

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNI--------FRIGTMLQNLNFWILNDIVWR 132
           + A  +       RVL P   L ++              F +   ++ + F      +W 
Sbjct: 190 FLARLQDIGREIHRVLWPGRYLVMLVGDRYQEGEYVPLGFLVAEAMRQVGFKFKGVKIWS 249

Query: 133 KSNPMPNFRGRRFQN 147
                   +    ++
Sbjct: 250 NKATRRPLKPYAVKS 264


>gi|38348090|ref|NP_941339.1| modification methylase [Serratia marcescens]
 gi|38259567|emb|CAE51796.1| modification methylase [Serratia marcescens]
          Length = 416

 Score = 69.2 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 98/293 (33%), Gaps = 69/293 (23%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           GN+ +    +  + + L    PPY L  N + Y       + V            Y  + 
Sbjct: 115 GNAYAFFSNI-TEQIHLCLTSPPY-LLRNSRDYGHGGGRGEQV------------YIDWL 160

Query: 86  RAWLLACRRVLKPNGTL--------WVIGSYHNIFRIG----TMLQNLNFWILNDIVW-- 131
              L    + L P  ++        +  G       +      +   L   +++ + W  
Sbjct: 161 LRILEPIVKQLVPGASVALNITQDSFNRGRPSRSLYLERLTLALCDKLGLELMDRLQWVN 220

Query: 132 --RKSNPMPNFRGRRFQ--NAHETLIWASP-------------SPKAKGY---------- 164
             +  +P      +R Q  +++E ++W +               P ++ +          
Sbjct: 221 RSKPPSPTHWACKQRVQLCSSYEPVLWFTNDASKVRSNNLRVLQPHSEQHLKLQAAGGEN 280

Query: 165 ---TFNYDALKAANEDVQMRSDWLIPICS-----------GSERLRNKDGEKLHPTQKPE 210
               +   A +  +     +++  IP  +               +  + G  LH    P 
Sbjct: 281 RTTFYGDGAYQLKSGSFGNKTEGTIPKNTLFYGNSCADTRFCHSIARELGFPLHGATSPT 340

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
            L + ++   T+PGD+++DPF G       A++L R ++  +   +++ I+  
Sbjct: 341 RLAAFLIEFLTEPGDVVVDPFAGLHKVPIAAERLGRRWLATDKIMEWLAISRN 393


>gi|21230526|ref|NP_636443.1| DNA methylase [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|21112097|gb|AAM40367.1| possible DNA methylase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
          Length = 972

 Score = 69.2 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 68/172 (39%), Gaps = 26/172 (15%)

Query: 19  WKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLN-----------------GQ 56
           W++++I G+S+ V+  L         V  I+ DPPY ++ N                 G 
Sbjct: 162 WQNRMILGDSLQVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGNTGH 221

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
           + R +   V A  D+W       +Y  + R  L+  R +L  +G+++V     N+ R+  
Sbjct: 222 ITR-EPEQVKAFRDTW--RDGIHSYLTYLRDRLMVARDLLTESGSIFVQIGDENVHRVRA 278

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
           +L  +     N +   +     +       N  + ++W + + K   Y   Y
Sbjct: 279 VLDEVFGED-NFVSMIQVQKTGSQASNLLANTVDFVLWYARTKKKVKYRQLY 329



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 40/67 (59%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           ++  Q   +++ R L+ ++ PGD++LDP  GSGT+  VA++  R ++ I+  +  + +A 
Sbjct: 455 IYVVQTATSVVERCLLMASDPGDLVLDPTCGSGTTAYVAEQWGRRWVTIDTSRVALALAR 514

Query: 263 KRIASVQ 269
            RI   +
Sbjct: 515 ARIMGAR 521


>gi|126451812|ref|YP_001067898.1| DNA methylase [Burkholderia pseudomallei 1106a]
 gi|242316235|ref|ZP_04815251.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei
           1106b]
 gi|126225454|gb|ABN88994.1| DNA methylase [Burkholderia pseudomallei 1106a]
 gi|242139474|gb|EES25876.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei
           1106b]
          Length = 138

 Score = 69.2 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 57/158 (36%), Gaps = 24/158 (15%)

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
           +Q     +    VW K+      R   F    E ++WAS         +           
Sbjct: 1   MQAAGLILRGVAVWDKTLGRMRLRRGGFAQQAEFVVWASRGAMRGCDVYLPGVFPC---- 56

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                   +P+             K H T+KP   ++R +V     G ++ D F GSGT 
Sbjct: 57  -------RLPLP------------KQHVTEKPLD-IAREVVRLVPAGGVVCDLFAGSGTF 96

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
            A A++    ++G E  Q Y  I++ R+ +      ++
Sbjct: 97  LAAAREAGLHWVGSESNQAYHAISSARLDATTDDSGVQ 134


>gi|188518306|ref|ZP_03003823.1| type III restriction-modification system: methylase [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
 gi|188998050|gb|EDU67147.1| type III restriction-modification system: methylase [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
          Length = 530

 Score = 69.2 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 75/246 (30%), Gaps = 34/246 (13%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKL-------------PAKSVDLIFADPP 48
             +    +N+  N      + +I G +  VL+ L                  D+I+ DPP
Sbjct: 73  KNEQLSFMNDAHNLFKNDTNSLIIGENYDVLKNLLVLERERERETSGRDAYYDVIYIDPP 132

Query: 49  YNL---QLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI 105
           YN    + +G  +     +  +     DKF S   +       L   + +LK +G ++V 
Sbjct: 133 YNTEASKTDGNNFSEKDDVAASKFVYRDKF-SRNGWLNMMNERLKLAKNLLKNDGVIFVS 191

Query: 106 GSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
              +    +  ++  +            + N  P    +     H+ ++    +   K  
Sbjct: 192 IDDNEQAYLKVLMDEIFGEENFTCNFVWEKNYAPKNNNKFVSVNHDYILCYCKNKILKNK 251

Query: 165 TFNYDALKAANEDVQMRSDWLIP----------------ICSGSERLRNKDGEKLHPTQK 208
                  +  N     + D                    I  G + L  K+   L+  +K
Sbjct: 252 FNRNQRTEKNNRLYFYKDDRGFYKSSDLTKKGSNNIYDIIWDGKKYLCPKNSSWLYNEEK 311

Query: 209 PEALLS 214
              L+ 
Sbjct: 312 MYELIK 317



 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 20/45 (44%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
                T KP  L+  ++  ++     ILD F GSGT+G     L 
Sbjct: 370 NHNFNTPKPIELIKYLINIASTNNARILDFFAGSGTTGHAVLALN 414


>gi|317178225|dbj|BAJ56014.1| Type III DNA modification enzyme [Helicobacter pylori F16]
          Length = 678

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 61/156 (39%), Gaps = 17/156 (10%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSL--------VDAV 68
           K  +IKG+++  L+ L    ++ + +I+ DPPYN + +  +Y  D S         +D  
Sbjct: 89  KHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNDSFIYSDDFSQSNEEVLKTLDYS 148

Query: 69  TDSWDKFSSF------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
            +  D   +         + +F    LL  + +LK +G +++    +   ++  +   + 
Sbjct: 149 KEKLDYIKNLFGSKCHSGWLSFMYPRLLLAKDLLKQDGVIFISIDDNECAQLKLLCDEIF 208

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
                               + FQN +E ++  +  
Sbjct: 209 DERNFLSSLTWLKGNAQNDAQYFQNNYENILVYAKH 244



 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 31/56 (55%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +G++ L +   +K+    KP  L+SR++  ST   DIILD F GSGT+     +  
Sbjct: 413 NGTKELNDLFNQKVFNNPKPTKLISRLIELSTNESDIILDFFAGSGTTAHAVLESN 468


>gi|222529643|ref|YP_002573525.1| adenine-specific DNA methylase [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456490|gb|ACM60752.1| adenine-specific DNA methylase [Caldicellulosiruptor bescii DSM
           6725]
          Length = 416

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 33/63 (52%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            G   +P   P  L   ++ S TK  DI+LDPF GSGT    A K  R+ IG+++    I
Sbjct: 27  HGIHSYPAMMPAPLAEFLIQSFTKKNDIVLDPFCGSGTVLYEALKNGRNAIGVDINPLAI 86

Query: 259 DIA 261
            I+
Sbjct: 87  LIS 89



 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
           I  N N +     KI   N +  L+++  ++VDLI   PPY        Y     L    
Sbjct: 217 ITNNSNYV-----KIFHKNILD-LDEVENETVDLILTSPPYGDARTTVAYGQFSRLSLQW 270

Query: 69  TDSWD 73
            + W+
Sbjct: 271 LNLWE 275


>gi|298246346|ref|ZP_06970152.1| DNA methylase N-4/N-6 domain protein [Ktedonobacter racemifer DSM
           44963]
 gi|297553827|gb|EFH87692.1| DNA methylase N-4/N-6 domain protein [Ktedonobacter racemifer DSM
           44963]
          Length = 277

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 59/155 (38%), Gaps = 24/155 (15%)

Query: 13  QNSIFEWKDKII-----KGNSISVLEKLPAKSVDLIFADPPYNL--------QLNGQLYR 59
           Q  + E +D+++      G+ ++++ ++ + S D I  DPPYN+        +     + 
Sbjct: 104 QRVLEENQDQLLPQPMLHGDCLTLMREMESASFDFIATDPPYNVHMTQTMSGKRKANQHA 163

Query: 60  PDHSLVDAVTDSWDKFS---SFEAYDAFTRAWLLACRRVLKPNGTLWVI--GSYHNIFRI 114
              +  D  +D     +   S+E Y          C R+LKP   + +I   +Y +   I
Sbjct: 164 SRRTTYDMRSDDPADLANLPSYETYLEAMEHIFQECARLLKPRKYMVIIVRDAYQHGEYI 223

Query: 115 GTMLQNL------NFWILNDIVWRKSNPMPNFRGR 143
            T +               +I+W ++       G 
Sbjct: 224 FTHVDLARRARLHGLIPKGEIIWYQAGTRLRPYGY 258



 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 6/99 (6%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR--RSFIGIEMKQDYI 258
            K H   KP  L+ +++   TKPG  +LDPF G G +   A      R  +GIE+   ++
Sbjct: 41  RKAHGANKPPQLMRQLIEFFTKPGARVLDPFAGVGGTLIGASICAKPREALGIEINPRWV 100

Query: 259 DIATKRIASVQ----PLGNIELTVLTGKRTEPRVAFNLL 293
           +I  + +   Q    P   +    LT  R     +F+ +
Sbjct: 101 EIYQRVLEENQDQLLPQPMLHGDCLTLMREMESASFDFI 139


>gi|251792313|ref|YP_003007038.1| modification methylase [Aggregatibacter aphrophilus NJ8700]
 gi|247533705|gb|ACS96951.1| modification methylase (Adenine-specificmethyltransferase)
           [Aggregatibacter aphrophilus NJ8700]
          Length = 496

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 77/194 (39%), Gaps = 25/194 (12%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + +I+G+++  L+ L       +DLI+ DPPYN        + D    D   D+ D +  
Sbjct: 45  NFLIEGDNLHSLKLLEKTHRNKIDLIYIDPPYN------RGKSDFIYDDHYIDNNDGYKH 98

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSN 135
            + + +F    L   R +LK  G +++    +   ++  + + +      +N  +W++++
Sbjct: 99  SK-WLSFMSKRLDIARNLLKDTGLIFISIDDNEDSQLKLLCEQIFSPENFINKFIWQRNS 157

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
                + +   N    ++++  +      T+   +        +  +D            
Sbjct: 158 SGKTEKDKFTVNTEYVILFSKSNKYKLNPTYKPLSENTKKLYSKNDND------------ 205

Query: 196 RNKDGEKLHPTQKP 209
             +   +L+P QKP
Sbjct: 206 -GRGNYRLYPLQKP 218



 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 14/142 (9%)

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS----GSERLR 196
           +G R +     L+        +G T +  A     E+   R D L    S    GS+ L 
Sbjct: 242 KGWRIKKEKMELLENENRLYLEGKTLSEKAYWLERENEGKRIDTLWNDISENTVGSKELE 301

Query: 197 NKDGEK-LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFI 249
           N  G+K      KP +L+ R L   +    +ILD F GSGT+G    +L       R +I
Sbjct: 302 NTLGKKEAFDNPKPLSLIKRCLEI-SNKNALILDFFAGSGTTGHAVAQLNKEDGGNRQYI 360

Query: 250 GIEMKQDYI--DIATKRIASVQ 269
                ++ I  ++  +R+ ++Q
Sbjct: 361 LCTNNENNICEEVTYQRLKNIQ 382


>gi|283778062|ref|YP_003368817.1| Site-specific DNA-methyltransferase (adenine- specific) [Pirellula
           staleyi DSM 6068]
 gi|283436515|gb|ADB14957.1| Site-specific DNA-methyltransferase (adenine- specific) [Pirellula
           staleyi DSM 6068]
          Length = 590

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 8/78 (10%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-------RSFIGI 251
           +G K+ P  K   +L+R++   T P DIILD F GSGT+     ++        R FI +
Sbjct: 374 EGRKVFPNPKDHEVLARLIRYVTGPNDIILDSFGGSGTTAHAVLQINRDTEGSERRFILV 433

Query: 252 EMKQD-YIDIATKRIASV 268
           EM  +  ++I  +RI  V
Sbjct: 434 EMLPEVAVEITAERIRRV 451



 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 43/111 (38%), Gaps = 10/111 (9%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPD-------HSLVDAVTD 70
           + +++G+++  L+ L       V  I+ DPPYN    G +Y  +         +   V  
Sbjct: 39  NLLVQGDNLLALKALLPYYAGRVKCIYIDPPYNTGNEGWVYNDNVNSPEIRQWIEATVGK 98

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
             +  S  + +       L   R  L  +G +++        R+  +++ +
Sbjct: 99  EGEDLSRHDKWLCMMYPRLALLRDFLTEDGVIFISIDDFEAHRLRLIVEEV 149


>gi|219849326|ref|YP_002463759.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
           aggregans DSM 9485]
 gi|219543585|gb|ACL25323.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aggregans DSM
           9485]
          Length = 368

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 38/70 (54%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           +  + +   T+PG+ +LDPF GSGT+   A++L R  +G+E++   ++     +A+ QP 
Sbjct: 153 IPRQFIRRYTRPGEWVLDPFAGSGTTLIEARRLGRHAVGLELQATMVEHTRALLAAEQPA 212

Query: 272 GNIELTVLTG 281
                 +  G
Sbjct: 213 QETVAAIEQG 222


>gi|317055783|ref|YP_004104250.1| adenine-specific DNA-methyltransferase [Ruminococcus albus 7]
 gi|315448052|gb|ADU21616.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Ruminococcus albus 7]
          Length = 683

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 23/141 (16%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIE 252
           DG  +  T KP  LL RI+  +T   D++LD F GSGT+     K+       R +I ++
Sbjct: 450 DGTTVFDTPKPVRLLDRIITIATNTEDVVLDFFSGSGTTAESLLKMNMSDSGNRKYILVQ 509

Query: 253 MKQD-----Y---IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL------VERGL 298
           + ++     Y    +I  +RI         E  + T    +  + F +       +E   
Sbjct: 510 INEETRLPSYANLCEIGEERIRRAGKKIKEENPLTT---ADLDIGFRVFKVDSSNMEDVY 566

Query: 299 IQPGQILTNAQGNISATVCAD 319
            +P  +  +        V AD
Sbjct: 567 YRPADLKQDQIMMNIDNVKAD 587



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 75/209 (35%), Gaps = 29/209 (13%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN--- 54
           + +K S+  +    SI + ++  I+G+++  L+ L       V +I+ DPPYN   +   
Sbjct: 91  LDRKKSVGRDGTPGSI-DTENIYIEGDNLDALKLLQETYLGKVKMIYIDPPYNTGNDFIY 149

Query: 55  ---------------GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99
                          GQ     + LV   T+S  +F +   +       L   + +L  +
Sbjct: 150 EDDFSLDTGEYLGNSGQFDEEGNRLVQ-NTESNGRFHT--DWLNMMYPRLRIAKDLLSED 206

Query: 100 GTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
           G +++    H +  +  M   +      ++D+ W+++  M N            L++   
Sbjct: 207 GAIFISIDEHEVGNLRKMCDEVFGGACFVSDVAWQRTYSMRNDVKGIAAEIEHVLVYGKQ 266

Query: 158 --SPKAKGYTFNYDALKAANEDVQMRSDW 184
                 K         K  N D   R  W
Sbjct: 267 PAWQPKKLARTEKMDSKYKNPDNDPRGAW 295


>gi|196248490|ref|ZP_03147191.1| DNA methylase N-4/N-6 domain protein [Geobacillus sp. G11MC16]
 gi|196212215|gb|EDY06973.1| DNA methylase N-4/N-6 domain protein [Geobacillus sp. G11MC16]
          Length = 474

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 58/191 (30%), Gaps = 5/191 (2%)

Query: 24  IKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSFE 79
           I+G+++  L+ L      SV +I+ DPPYN                A +    ++     
Sbjct: 90  IEGDNLEALKLLRASHEGSVQMIYIDPPYNTGKAFTYKDNWRKRKRAASHIEQEEARVHA 149

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMP 138
            +       L   + +L   G +++         +  M   +            +    P
Sbjct: 150 GWLNMMYPRLWVAKALLAETGAIFISIDDTEQANLKKMCDEIFGERNFVATFIWQRAFSP 209

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
               +     H+ ++  + +     +       +A        +D   P  SG   +   
Sbjct: 210 VNMNKFASRNHDFILCYAKNIDRLAWYGLPRDSEANGRYANPDNDPRGPWMSGDLSVGPP 269

Query: 199 DGEKLHPTQKP 209
             EK++    P
Sbjct: 270 IPEKIYDIVTP 280



 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIE 252
           DG  +    KP  L+ R++  +TK  D+ILD F GS T+     +        RSFI ++
Sbjct: 358 DGVAVMDYPKPVKLIQRMVALTTKDDDVILDFFSGSATTAHAVMQQNAEDGGQRSFIMVQ 417

Query: 253 MKQDYIDIA 261
           + +  +  +
Sbjct: 418 LPERMVKTS 426


>gi|118576298|ref|YP_876041.1| adenine specific DNA methylase [Cenarchaeum symbiosum A]
 gi|118194819|gb|ABK77737.1| adenine specific DNA methylase [Cenarchaeum symbiosum A]
          Length = 538

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 64/186 (34%), Gaps = 9/186 (4%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLNGQLYRP--DHS 63
           + ++ N   +  + II GN++  L+ L       ++ I+ DPPYN   N   Y    DH 
Sbjct: 1   MKKSYNPQKDSDNMIIHGNNLDALKSLLPNYRSRINCIYIDPPYNTGSNNWKYTDNVDHP 60

Query: 64  LVDAVTDS---WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           +  +  +     +  S  E +       L   + +L  +G +++    +    +  M+ +
Sbjct: 61  VFKSWLNKEIGIEDMSRHEKWLCMMWPRLQILKELLTDDGIIFISIDDNEYHHLRVMMDD 120

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           +     N I             + F  +H+ ++  S               K    D   
Sbjct: 121 MFGED-NFIATCVWEGGLKNDSKYFSVSHDYILCYSKKKSLLSDKGTRWRHKKDGIDKIY 179

Query: 181 RSDWLI 186
           +    +
Sbjct: 180 KQVEHL 185



 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYIDI 260
            K  +++  ++   T    IILD F GSGT+     +L       R FI +E++     I
Sbjct: 329 PKDVSVIKDLISMVTPSDGIILDSFAGSGTTAQAVLELNKEDGGNRRFILVELEDYADKI 388

Query: 261 ATKRIASV 268
             +R+  V
Sbjct: 389 TAERVRRV 396


>gi|290559536|gb|EFD92865.1| Methyltransferase type 11 [Candidatus Parvarchaeum acidophilus
           ARMAN-5]
          Length = 297

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 11/99 (11%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
           ++            R DW     +   R                 +   +++  T P DI
Sbjct: 41  DFSPETTTVWSFPKRGDWATHYLNSKYRGN-----------WAPQIPRNLILEYTNPEDI 89

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           +LDP  GSGT+    K L R+ IG+++ ++ I IA  R+
Sbjct: 90  VLDPMNGSGTTLIECKLLGRNGIGVDINEEAIMIALDRL 128



 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 52/166 (31%), Gaps = 22/166 (13%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
            +N   + +   + K   G++ + L  +   ++DLI   PPY   ++    R +  L   
Sbjct: 127 RLNFQAHELPSSEIKTFVGDARN-LNLIKDNAIDLILTHPPYVNIISYTYNRVEGDLSS- 184

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNI-------FRIGTMLQ 119
                   SS   +        +   RV+KP      ++G            FR      
Sbjct: 185 -------ISSVSEFIEEINKLAVEFFRVIKPGKYCAILMGDTRRHSHYIPVTFRTMQAFL 237

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQN-----AHETLIWASPSPK 160
              F +  DI+  + N     +    +      AHE L        
Sbjct: 238 EAGFALKEDIIKLQWNMQSTRQNWAGKQNFYKIAHEHLFVFRKPTH 283


>gi|315585904|gb|ADU40285.1| possible type III DNA modification enzyme (methyltransferase)
           [Helicobacter pylori 35A]
          Length = 445

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 62/164 (37%), Gaps = 18/164 (10%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSL--------VDAV 68
           K  +IKG+++  L+ L    ++ + +I+ DPPYN + +  +Y  D S         +D  
Sbjct: 89  KHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNDSFIYSDDFSQSNEEILKTLDYS 148

Query: 69  TDSWDKFSSF------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL- 121
            +  D   +         + +F    LL  + +LK +G +++    +   ++  +   + 
Sbjct: 149 KEKLDYIKNLFGSKCHSGWLSFMYPRLLLAKDLLKQDGVIFISIDDNEAAQLKLLCDEIF 208

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
                 +         P     + +  HE ++    +   K   
Sbjct: 209 GEGNFIETFLWNKTQTPPSASNKTRKTHEFILCYQKNKDNKKMI 252



 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 199 DGEKLHPTQKPEALLSRILV---SSTKPGDIILDPFFGSGTSGAVAKKLR 245
           D  K+    KP +L+  ++    ++T  GDIILD F GSGT+     +  
Sbjct: 383 DDNKIFNFNKPVSLIKYLISICSNNTNEGDIILDFFAGSGTTAHAVLESN 432


>gi|329848121|ref|ZP_08263149.1| type III restriction-modification system EcoP15I enzyme mod
           [Asticcacaulis biprosthecum C19]
 gi|328843184|gb|EGF92753.1| type III restriction-modification system EcoP15I enzyme mod
           [Asticcacaulis biprosthecum C19]
          Length = 189

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 54/145 (37%), Gaps = 18/145 (12%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + +I+G+++  L+ L       V  I+ DPPYN +              +  + +D    
Sbjct: 43  NMLIQGDNLEALKSLLPYYRGQVKCIYIDPPYNTR--------------SAFEHYDDNLE 88

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNP 136
              + A     L+  R +L  +G++WV    +    +  ++  +       D V  + + 
Sbjct: 89  HSQWLAMIWPRLVLLRELLAEDGSIWVSIDDNEGHYLKVIMDEVFGRRNFIDTVIWEKSD 148

Query: 137 MPNFRGRRFQNAHETLIWASPSPKA 161
            P    R+  + H+ +   S     
Sbjct: 149 SPRNSARQLSSDHDFIFGYSKREDW 173


>gi|284048552|ref|YP_003398891.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Acidaminococcus fermentans DSM 20731]
 gi|283952773|gb|ADB47576.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Acidaminococcus fermentans DSM 20731]
          Length = 640

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 69/170 (40%), Gaps = 17/170 (10%)

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                D         + ++   G+K+  T KP  LL RI+  +T    I+LD F GSGT+
Sbjct: 354 NFWSYDETGHTDEAKKEIKTIFGKKVFDTPKPTRLLKRIIQIATNKDSIVLDAFAGSGTT 413

Query: 238 GAVAKKL------RRSFIGIEMKQDYIDIATKRIASV----QPLGNIELTVLTGKRTEPR 287
                +        R FI +EM     DI  +R+  V        N E  ++  K T   
Sbjct: 414 AHSVLETNLEDNGNRKFILVEMMDYANDITAQRVKKVISGYSKEKNKENVLMEEKITLKV 473

Query: 288 VAFN-LLVERGLIQPGQILTNAQGNISATVCAD-----GTLISGTELGSI 331
           +     L+E+  ++  +   NA  N+S  +  +     GT+ +  E+  I
Sbjct: 474 LEKGKELIEQA-LKIKKEAKNAYDNVSIKIIDNHLQVIGTIKATDEIKGI 522



 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 60/184 (32%), Gaps = 14/184 (7%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLY-------RPDHSLVDAVTD 70
           +KII G++++ L+ L       +  I+ DPPYN    G +Y       R    L + V  
Sbjct: 44  NKIIHGDNLAALKSLLPQYEGKIKCIYIDPPYNTGNEGWVYNDNVNDPRIQKWLGEVVGK 103

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
             +  S  + +       L   +R+L  +G +++    +    +  +   +         
Sbjct: 104 EGEDLSRHDKWLCMMYPRLRLLQRLLSEDGAIFISIDDNEQAHLKEICDEIFGIQCFVAS 163

Query: 131 WRKSNP-MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
               +   P    +      E ++  S      G+T +               D    + 
Sbjct: 164 ISWQHTYSPRNDSKGISGETEYILVYSK---KIGWTPHKLPRTKKMNSKYQNKDGDKELW 220

Query: 190 SGSE 193
             S+
Sbjct: 221 RTSD 224


>gi|261403293|ref|YP_003247517.1| DNA methylase N-4/N-6 domain protein [Methanocaldococcus vulcanius
           M7]
 gi|261370286|gb|ACX73035.1| DNA methylase N-4/N-6 domain protein [Methanocaldococcus vulcanius
           M7]
          Length = 530

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 59/149 (39%), Gaps = 8/149 (5%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSSTKPGD 225
           ++  K   E +  + +W +     SE+ R K    +HP +      L    L      GD
Sbjct: 72  FEKRKEWEEKLGFKLNWDLAFDLLSEKERTKHVHGIHPYKGKFIPQLTEYFLKRHFNVGD 131

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS--VQPLGNIELTVLTGKR 283
           I++DPF GSGT+     ++  + IGI++      IA  ++    +Q L  I L +L   R
Sbjct: 132 IVIDPFMGSGTTLVQCMEMGINSIGIDISPFNCLIAEVKLQKYDIQKLKKILLDMLNKTR 191

Query: 284 TEPRVAFNLLVERGLIQPGQILTNAQGNI 312
              +     L +   I+    L       
Sbjct: 192 EFSK----NLGDEEFIKEMDKLIKKYNKK 216



 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 56/154 (36%), Gaps = 29/154 (18%)

Query: 23  IIKGNSISV-----LEKLPA-------KSVDLIFADPPYNLQLNGQ-----------LYR 59
           II G+S +V     L+K P        K +D IF  PPY  Q++             + R
Sbjct: 377 IINGDSRTVDIEEELKKHPNFYELYKNKKIDGIFTSPPYLGQIDYHEQHAYAYELFDIPR 436

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
            D   + A      K  + + Y       L+  ++ LK +  ++++ +         + +
Sbjct: 437 LDELEIGAKFKGSSK-KAQKEYIEGMSDVLINMKKFLKNDAKIFIVVNDKKKLY-NEIFE 494

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
                ++ +       P+ N   R     +E++ 
Sbjct: 495 KSGLILVREF----KRPVLNRTERDRNPYYESIF 524


>gi|189500097|ref|YP_001959567.1| Site-specific DNA-methyltransferase (adenine-specific) [Chlorobium
           phaeobacteroides BS1]
 gi|189495538|gb|ACE04086.1| Site-specific DNA-methyltransferase (adenine-specific) [Chlorobium
           phaeobacteroides BS1]
          Length = 644

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 77/213 (36%), Gaps = 30/213 (14%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQLN------------------GQLYRPDH 62
           I+G++  VL+ L       + +I+ DPPYN   +                  G +     
Sbjct: 102 IEGDNFEVLKILQESYLCKIKMIYIDPPYNTGNDFIYKDNFAKSKDEYEEELGTIDEEGG 161

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
            L    +DS  +F S   + +     L+  R +LK +G +++    H +  +  +++ + 
Sbjct: 162 KLFR-NSDSNGRFHS--DWLSMMYERLVVARDLLKDDGVIFISIDEHELVSLAKIMEEIF 218

Query: 123 FWILNDIVWRKSNPMPNFRGR--RFQNAHETLIWASPSPK----AKGYTFNYDALKAANE 176
                D +  + N       +  RF+  HE ++    +      AK         +  N 
Sbjct: 219 GSNNMDFLIWRKNGKQGNTKKINRFKITHEYILVGYKNKYETFIAKTKLMPNWKGEKGNP 278

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
           D   R  W   + S +E   N + E  +    P
Sbjct: 279 DNDPRGPWESGVISRAEEKSNVNSENYYSITLP 311



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 12/81 (14%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIG--- 250
            ++   T KP  +L  +   ST+  DIILD F GS T+     +L       R FI    
Sbjct: 383 NKEFFDTPKPTKILKELSRCSTEKDDIILDFFSGSATTAQAVMQLNSEDGGNRKFIMAQL 442

Query: 251 ---IEMKQDYIDIATKRIASV 268
               +   +      K IA +
Sbjct: 443 PEPCDENSEAFKAGYKTIAEI 463


>gi|259502624|ref|ZP_05745526.1| type III restriction-modification system StyLTI enzyme mod
           [Lactobacillus antri DSM 16041]
 gi|259169439|gb|EEW53934.1| type III restriction-modification system StyLTI enzyme mod
           [Lactobacillus antri DSM 16041]
          Length = 649

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 82/242 (33%), Gaps = 24/242 (9%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVD- 66
           +N       K+    G+++ VL  L    A  +D+I+ DPPYN   +G +Y       D 
Sbjct: 89  QNNGEGKNSKNLFFTGDNLEVLRHLQTSYANKIDVIYIDPPYNTGSDGFVYPDSFEYSDD 148

Query: 67  ------AVTDSW-DKFSSFE------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
                  +TD   ++  S +      A+  F    L+  +R+L   GT+++    + +  
Sbjct: 149 QLKDMFGITDEQVERMKSIQGKASHSAWLTFMYPRLVLAKRILSDQGTIFISIDDNELSN 208

Query: 114 IGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD--- 169
           +  +   +         +   S    +       N + TL+++           N+    
Sbjct: 209 LKEICDEIFGEDNFVSNIIWNSRKSVSNDAIISLNHNSTLVYSKNFKIFNDNKGNFKLPL 268

Query: 170 -ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP--TQKPEALLSRILVSSTKPGDI 226
                +N D  +R  W            N   E  +P   +K      R   +     + 
Sbjct: 269 SKNGFSNPDNDLRGVWKADPFDSPGIRPNLTYEIENPNTHKKFLPPKGRCWRTGPNEYED 328

Query: 227 IL 228
           +L
Sbjct: 329 LL 330



 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 14/153 (9%)

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN------YDALKA 173
           NL + I N    +K  P      R   N +E L+  +     K  T        Y  +  
Sbjct: 297 NLTYEIENPNTHKKFLPPKGRCWRTGPNEYEDLLRDNRIIFGKNGTSKPQLKRFYFEVMD 356

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFF 232
             +  +   + +     G++ +++   EK+  T KP + + +I+ +S++   + ILD F 
Sbjct: 357 KGQTAKSIWEDVGTSTDGTKEIQSLFNEKIFSTPKPTSFIKKIVALSTSSGYETILDFFA 416

Query: 233 GSGTSGAVAKKLR------RSFIGIEM-KQDYI 258
           GS T+     +L       R FI +++ ++ Y 
Sbjct: 417 GSSTTADAVMQLNAEDGGHRKFIMVQLPEKTYH 449


>gi|258508018|ref|YP_003170769.1| adenine specific DNA methylase Mod [Lactobacillus rhamnosus GG]
 gi|257147945|emb|CAR86918.1| Adenine specific DNA methylase Mod [Lactobacillus rhamnosus GG]
          Length = 325

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 53/128 (41%), Gaps = 17/128 (13%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPD------ 61
           +N+N     K+    G+++ VL  L       +D+I+ DPPYN   +G +Y         
Sbjct: 85  QNKNEGKNSKNLFFTGDNLEVLRHLQNNYQNKIDVIYIDPPYNTGSDGFVYPDSFEYSDD 144

Query: 62  --HSLVDAVTDSWDKFSSFE------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
               + D   D  ++  S +      A+  F    L+  + +L  +G ++V    +   +
Sbjct: 145 QLERMFDIDDDQVERLKSIQGKSSHSAWLTFMLPRLILAKGLLSDSGVIYVSIDDNEQAQ 204

Query: 114 IGTMLQNL 121
           +  +  ++
Sbjct: 205 LKLLCDDI 212


>gi|312877586|ref|ZP_07737545.1| adenine-specific DNA methylase [Caldicellulosiruptor lactoaceticus
           6A]
 gi|311795661|gb|EFR12031.1| adenine-specific DNA methylase [Caldicellulosiruptor lactoaceticus
           6A]
          Length = 416

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 33/63 (52%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            G   +P   P  L   ++ S TK  DI+LDPF GSGT    A K  R+ IG+++    I
Sbjct: 27  HGIHSYPAMMPAPLAEFLIQSFTKRNDIVLDPFCGSGTVLYEALKNGRNAIGVDINPLAI 86

Query: 259 DIA 261
            I+
Sbjct: 87  LIS 89



 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
           I  N N +     KI   N +  L+++  ++VDLI   PPY        Y     L    
Sbjct: 217 ITNNSNYV-----KIFHKNILD-LDEVENETVDLILTSPPYGDARTTVAYGQFSRLSLQW 270

Query: 69  TDSWD 73
            + W+
Sbjct: 271 LNLWE 275


>gi|199597360|ref|ZP_03210791.1| Adenine specific DNA methylase Mod [Lactobacillus rhamnosus HN001]
 gi|199591876|gb|EDY99951.1| Adenine specific DNA methylase Mod [Lactobacillus rhamnosus HN001]
          Length = 250

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 53/128 (41%), Gaps = 17/128 (13%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPD------ 61
           +N+N     K+    G+++ VL  L       +D+I+ DPPYN   +G +Y         
Sbjct: 85  QNKNEGKNSKNLFFTGDNLEVLRHLQNNYQNKIDVIYIDPPYNTGSDGFVYPDSFEYSDD 144

Query: 62  --HSLVDAVTDSWDKFSSFE------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
               + D   D  ++  S +      A+  F    L+  + +L  +G ++V    +   +
Sbjct: 145 QLERMFDIDDDQVERLKSIQGKSSHSAWLTFMLPRLILAKGLLSDSGVIYVSIDDNEQAQ 204

Query: 114 IGTMLQNL 121
           +  +  ++
Sbjct: 205 LKLLCDDI 212


>gi|148264781|ref|YP_001231487.1| DNA methylase N-4/N-6 domain-containing protein [Geobacter
           uraniireducens Rf4]
 gi|146398281|gb|ABQ26914.1| DNA methylase N-4/N-6 domain protein [Geobacter uraniireducens Rf4]
          Length = 609

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 68/219 (31%), Gaps = 17/219 (7%)

Query: 5   NSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYR-- 59
            SL     + S+ +  + II G+++  L+ L       ++ IF DPPYN    G  Y   
Sbjct: 30  KSLPAEGQKPSLDD--NLIIHGDNLEALKALLPTHAGKINCIFIDPPYNTGNEGWCYNDN 87

Query: 60  ------PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
                  +     A     +     + +       L     +L  +G L+V    +   R
Sbjct: 88  VRSPLMKEWLKKSANPVDKEDLERHDKWLCMMWPRLNLLHELLADDGVLFVTIDDNEQHR 147

Query: 114 IGTMLQNLNFW---ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
           +  +L  +        + I W+K     N   + F    + ++    S +         A
Sbjct: 148 LRDILDEVFHSEDAFYSHIAWQKKYATSN-DAKGFSTMFDHILVYRKSEEFSRNLLGRTA 206

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
              AN   +              +   +     +P   P
Sbjct: 207 GNDANYRHEDDKGTFRSDNYTCNKTAEERPNLYYPVINP 245



 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/179 (23%), Positives = 64/179 (35%), Gaps = 16/179 (8%)

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           +N     +I  +K+      + R   N    LIW       K   F             +
Sbjct: 243 INPNTGEEIWPKKTAVWRYSKERHQYNVDNDLIWWGADGTGKVPGFKRYKHLLQGGGGTV 302

Query: 181 RSDWLIPICSGSERLRNKDGEKL-------HPTQKPEALLSRILVSSTKPGDIILDPFFG 233
            S W     +G      K+  ++         T KP  LLSRIL  +T    IILD F G
Sbjct: 303 PSTWWPHDFAGHTDEAKKELREIMEGKGTEFFTPKPTRLLSRILEIATDENSIILDSFAG 362

Query: 234 SGTSG---AVAKKL---RRSFIGIEMKQDYIDIATKRIASVQ---PLGNIELTVLTGKR 283
           SGT+      A +     R F+ IE ++    +  +R+  V    P    +   L  ++
Sbjct: 363 SGTTAHAVLAANQKDGGNRRFMLIECEEYADTLTAERVRRVINGYPFSGNQREELFSEK 421


>gi|163846563|ref|YP_001634607.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222524354|ref|YP_002568825.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus sp.
           Y-400-fl]
 gi|163667852|gb|ABY34218.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222448233|gb|ACM52499.1| DNA methylase N-4/N-6 domain protein [Chloroflexus sp. Y-400-fl]
          Length = 368

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 7/121 (5%)

Query: 181 RSDWLIPICSGSERLRNK-DGEKLHPT----QKPEALLSRILVSSTKPGDIILDPFFGSG 235
           R      I + S  L  + DG  +H           +  + +   T+PG+ +LDPF GSG
Sbjct: 117 RWKEYDDILTDSLWLIERRDGSGVHRADYWGNFVPQIPHQFIRRYTRPGEWVLDPFAGSG 176

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
           T+   A++L R+ IG+E++   +    + + + +P  +  + V+    +   V F  L+ 
Sbjct: 177 TTLIEARRLGRNAIGVELQPAMVRHVEE-LLAAEPTPHPTVAVIEQGDSLT-VDFADLLR 234

Query: 296 R 296
           R
Sbjct: 235 R 235


>gi|163846442|ref|YP_001634486.1| putative RNA methylase [Chloroflexus aurantiacus J-10-fl]
 gi|222524216|ref|YP_002568687.1| putative RNA methylase [Chloroflexus sp. Y-400-fl]
 gi|163667731|gb|ABY34097.1| putative RNA methylase [Chloroflexus aurantiacus J-10-fl]
 gi|222448095|gb|ACM52361.1| putative RNA methylase [Chloroflexus sp. Y-400-fl]
          Length = 280

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 32/60 (53%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            + HP+ KP  L++ ++   T+    +LDPF G G +   +    R+ +GI++  +Y  I
Sbjct: 44  RRQHPSPKPPQLMAELIRFFTRQHGHVLDPFAGVGGTLIASSLEGRTAVGIDLSAEYATI 103



 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 49/147 (33%), Gaps = 19/147 (12%)

Query: 26  GNSISVLEKLPA---KSVDLIFADPPYN-------LQLNGQLYRPDHSLVDAVTDSWDKF 75
           G++ ++LE LP    +  DLI  DPPY             +  RP+ +            
Sbjct: 121 GDARNLLE-LPEVRERPFDLILTDPPYAAMMARPKTGERRKRGRPNPTPFTTSAADLGNL 179

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIG-SYHNIFRIGTMLQNLNFWILNDIVWRKS 134
              E         L A  +VL+P G L +             ML        + ++  + 
Sbjct: 180 PYHEFIGELCT-ILTAALQVLRPGGYLVIFAKDLQPTPEHHNMLH------ADLVIALRQ 232

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKA 161
            P   +RG R  +     ++    P A
Sbjct: 233 VPGLEYRGYRIWHDQSQRLYPFGYPYA 259


>gi|71901477|ref|ZP_00683565.1| DNA methylase [Xylella fastidiosa Ann-1]
 gi|71728777|gb|EAO30920.1| DNA methylase [Xylella fastidiosa Ann-1]
          Length = 100

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 8/88 (9%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDAVT-----DSWDKF 75
            +G+++ +L  + + SVD +  DPPY    +++  +        ++  T     D    F
Sbjct: 12  HEGDALRLLCDIDSASVDAVITDPPYCSGAMRMADRFKPTKRKYINNGTKHVAPDFDCDF 71

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLW 103
                + A++  WL  CRRV +P G L+
Sbjct: 72  RDHRGFLAWSSQWLSECRRVTRPGGVLY 99


>gi|330988135|gb|EGH86238.1| DNA methylase N-4/N-6 [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 140

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 11/88 (12%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            +I+ G+ I V+  LP +SV      PPY    +             V        +   
Sbjct: 5   HQILLGDCIDVMRTLPDESVHTCVTSPPYYGLRDY-----------GVEGQIGLEETPAE 53

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSY 108
           + A         RRVL+ +GT+WV    
Sbjct: 54  FIARLVDVFREVRRVLRADGTIWVNMGD 81


>gi|238854122|ref|ZP_04644469.1| DNA methylase [Lactobacillus gasseri 202-4]
 gi|238833198|gb|EEQ25488.1| DNA methylase [Lactobacillus gasseri 202-4]
          Length = 636

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 57/169 (33%), Gaps = 17/169 (10%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR-----PDH 62
           +NQ    + K+    G+++ VL  L       +D+I+ DPPYN   +G +Y       D 
Sbjct: 85  QNQGEGKDSKNLFFTGDNLEVLRHLQNNYQNKIDVIYIDPPYNTGSDGFVYPDSFEYSDE 144

Query: 63  SLVDAVTDSWDKF---------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
            L D      D+          SS  A+  F    L+  +R L  +G +++    +    
Sbjct: 145 KLKDMFGLDDDQVERLKSIQGKSSHSAWLTFMYPRLILAKRFLANSGVIFISIDDNESTN 204

Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
           +  +   +                            E ++  S S   K
Sbjct: 205 LKEICDEIFGENNFVANIAWRRQDGQSNIGSLAKVKEYILVYSKSDTFK 253



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 12/121 (9%)

Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS---GSERLRNKDGEKLH 204
             + + W   +  +             N+       W I   +   GS  ++   G++  
Sbjct: 317 KKDLIHWPEKNGGSPRRKI--YLKDMLNKGQIPNDFWGIEYGTNQRGSNEVQELFGKRYF 374

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM-KQDY 257
              KP +L+  ++         ++D F GS T+     +L       R FI +++ +Q Y
Sbjct: 375 NFPKPTSLIKMLVRIGGNKYATVMDFFAGSSTTADAVMQLNAEDDGHRRFIMVQLPEQTY 434

Query: 258 I 258
            
Sbjct: 435 H 435


>gi|258646417|ref|ZP_05733886.1| DNA (cytosine-5-)-methyltransferase [Dialister invisus DSM 15470]
 gi|260403820|gb|EEW97367.1| DNA (cytosine-5-)-methyltransferase [Dialister invisus DSM 15470]
          Length = 324

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 33/64 (51%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           + ++ H       L++R L   T P DI+LDPF   G+   VA ++ R  +G E+K+ Y 
Sbjct: 247 EKDERHICPLQLDLIARCLELWTNPNDIVLDPFASIGSVPIVALQMGRRTMGFELKESYF 306

Query: 259 DIAT 262
             A 
Sbjct: 307 KQAV 310



 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 10/84 (11%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+SI +L+ LP   +      PP++          D  L ++  D  D+F     Y 
Sbjct: 14  LYNGDSIEILKGLPDHCIHYAIFSPPFSSLYTY--SNSDRDLGNSTGD--DQF-----YQ 64

Query: 83  AFTRAWLLACRRVLKPNGTLWVIG 106
            F         RV+ P   + V  
Sbjct: 65  HFLFLV-KELARVIMPGRLVSVHC 87


>gi|261416885|ref|YP_003250568.1| Site-specific DNA-methyltransferase (adenine-specific) [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261373341|gb|ACX76086.1| Site-specific DNA-methyltransferase (adenine-specific) [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302327028|gb|ADL26229.1| putative type III restriction-modification system, Mod subunit
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 520

 Score = 68.5 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/206 (12%), Positives = 69/206 (33%), Gaps = 11/206 (5%)

Query: 21  DKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLNGQLY-------RPDHSLVDAVTD 70
           +KII G+++  L+ L  +    +  I+ DPPYN      +Y       +    L   V  
Sbjct: 37  NKIIHGDNLEALKSLLPEYEGRIKCIYIDPPYNTGNENWVYNDNVNSPKIKKWLGQVVGK 96

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDI 129
             +  +  + +       L   +++L  +G +++    +    +  +   +         
Sbjct: 97  ESEDLTRHDKWLCMMYPRLKLLQKLLSNDGAIFISIDDNEQANLKLVCDEIFGAGNFVGD 156

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
              +   +     +     HE ++    S + + +       +A        +D   P  
Sbjct: 157 FIWEKKKVVQNDSKFSSVNHEYVLSYRKSEQLQVFNLLPRTEEANARYANPDNDPNGPWT 216

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSR 215
           S +   ++   + ++    P  +  +
Sbjct: 217 SVALTAKSGSADNIYDYTFPNGIYWK 242



 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 6/83 (7%)

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------R 245
            E+L+   G+ +  T K   L+  +LV +T    IILD F GSGT+      L       
Sbjct: 306 KEQLKRTLGKNVFDTPKSIKLIEMLLVLATDKSSIILDSFAGSGTTAHAVLNLNKQDGGN 365

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R FI +EM+     I  +R+  V
Sbjct: 366 RKFILVEMEDYAETITAERVRRV 388


>gi|116334205|ref|YP_795732.1| adenine specific DNA methylase Mod [Lactobacillus brevis ATCC 367]
 gi|116099552|gb|ABJ64701.1| Adenine specific DNA methylase Mod [Lactobacillus brevis ATCC 367]
          Length = 289

 Score = 68.5 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 62/173 (35%), Gaps = 18/173 (10%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR-----PDH 62
           +N+    + K+    G+++ VL  L       VD+I+ DPPYN   +G +Y       D 
Sbjct: 85  QNRGEGRDSKNLFFTGDNLEVLRHLQNNYQNKVDVIYIDPPYNTGSDGFVYPDAFEYSDD 144

Query: 63  SLVDAVTDSWDKF---------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
            L    +   D+          SS  A+  F    L+  +++L   G +++    +    
Sbjct: 145 KLKGMFSLDDDQVERLKSIQGKSSHSAWLTFMYPRLVLAKQLLSDKGIIFISIDDNENSD 204

Query: 114 IGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
           +G ++  +                 P    +  +   E ++    +   + Y 
Sbjct: 205 LGLLMNTIFGERQFKVQFIWTKTETPPALSKYSRRTTEYVLTFEKNSFGEKYY 257


>gi|309792609|ref|ZP_07687070.1| putative RNA methylase [Oscillochloris trichoides DG6]
 gi|308225331|gb|EFO79098.1| putative RNA methylase [Oscillochloris trichoides DG6]
          Length = 283

 Score = 68.5 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
            +LHP+ KP  L++ ++   TK G  +LDPF G G +        RS IG+++ + Y
Sbjct: 51  RRLHPSPKPPQLMAELVRFFTKRGGHVLDPFAGVGGTLIACSLEGRSAIGVDLSEVY 107



 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 49/147 (33%), Gaps = 17/147 (11%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQL----NGQLYRPDHSLVDAVTDSWDKFS 76
           I G+S   L++ PA   +  DLI  DPPY   L     G+  +         TDS D   
Sbjct: 126 IIGDSRH-LQRYPAITAQRFDLILTDPPYAQMLAKPKTGERKKRGQGAATPFTDSADDLG 184

Query: 77  SFEAYDAF--TRAWLLACRRVLKPNGTLWVIG-SYHNIFRIGTMLQNLNFWILNDIVWRK 133
           +   ++     R        +L+P G L +             ML       L D+    
Sbjct: 185 NLGYWEFLSALRDLFANTIPLLRPGGHLVLFTKDLQPSPDHHNMLHADIVANLRDL---- 240

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPK 160
             P   +RG +  +      +    P 
Sbjct: 241 --PGLEYRGYQIWHDQSQNFYPFGYPF 265


>gi|190410439|ref|YP_001965942.1| putative modification methylase [Klebsiella pneumoniae]
 gi|226807827|ref|YP_002791541.1| putative restriction methylase [Enterobacter cloacae]
 gi|226810158|ref|YP_002791854.1| putative restriction methylase [Enterobacter cloacae]
 gi|146151233|gb|ABQ02999.1| putative modification methylase [Klebsiella pneumoniae]
 gi|226426054|gb|ACO54147.1| putative restriction methylase [Enterobacter cloacae]
 gi|226426385|gb|ACO54477.1| putative restriction methylase [Enterobacter cloacae]
          Length = 416

 Score = 68.5 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 98/293 (33%), Gaps = 69/293 (23%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           GN+ +    +  + + L    PPY L  N + Y       + V            Y  + 
Sbjct: 115 GNAYAFFSNI-TEQIHLCLTSPPY-LLRNSRDYGHGGGRGEQV------------YIDWL 160

Query: 86  RAWLLACRRVLKPNGTL--------WVIGSYHNIFRIG----TMLQNLNFWILNDIVW-- 131
              L    + L P  ++        +  G       +      +   L   +++ + W  
Sbjct: 161 LRILEPIVKQLVPGASVALNITQDSFNRGRPSRSLYLERLTLALCDKLGLELMDRLQWVN 220

Query: 132 --RKSNPMPNFRGRRFQ--NAHETLIWASP-------------SPKAKGY---------- 164
             +  +P      +R Q  +++E ++W +               P ++ +          
Sbjct: 221 RSKPPSPTHWACKQRVQLCSSYEPVLWFTNDASKVRSNNLRVLQPHSEQHLKLQAAGGEN 280

Query: 165 ---TFNYDALKAANEDVQMRSDWLIPICS-----------GSERLRNKDGEKLHPTQKPE 210
               +   A +  +     +++  IP  +               +  + G  LH    P 
Sbjct: 281 RTTFYGDGAYQLKSGSFGNKTEGTIPKNTLFYGNSCADTRFCHSIARELGFPLHGATSPT 340

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
            L + ++   T+PGD+++DPF G       A++L R ++  +   +++ I+  
Sbjct: 341 RLAAFLIEFLTEPGDLVVDPFAGLHKVPIAAERLGRRWLATDKIMEWLAISRN 393


>gi|167045608|gb|ABZ10258.1| hypothetical protein ALOHA_HF4000APKG10I20ctg9g1 [uncultured marine
           crenarchaeote HF4000_APKG10I20]
          Length = 89

 Score = 68.5 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 2/86 (2%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            +KI   + I  ++ +P + +DL+  DPP+ +         + +    ++   +     E
Sbjct: 1   MNKIYNKDCIVGMKAIPNEKIDLVITDPPFAINFKANKANYNRTASRVLSGYHE--IKVE 58

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVI 105
            Y  FT AW+    R+LK        
Sbjct: 59  DYYDFTNAWMYDIYRILKNLEACMYF 84


>gi|184155519|ref|YP_001843859.1| methyltransferase [Lactobacillus fermentum IFO 3956]
 gi|183226863|dbj|BAG27379.1| methyltransferase [Lactobacillus fermentum IFO 3956]
 gi|299783293|gb|ADJ41291.1| Methyltransferase [Lactobacillus fermentum CECT 5716]
          Length = 573

 Score = 68.5 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 58/161 (36%), Gaps = 18/161 (11%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
           +NQ    + K+    G+++ VL  L       +D+I+ DPPYN   +   Y       DA
Sbjct: 12  QNQGEGKDSKNLFFTGDNLEVLRHLQTSYQNKIDVIYIDPPYNTGQDDFAYPDSFEYSDA 71

Query: 68  VTDSW-----DKF---------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
             +       D+          SS  A+  F    L   + +LK  G +++    +    
Sbjct: 72  QLEDMFGLDDDQLARLKSIQGKSSHSAWLTFMYPRLQLAKHLLKQTGVIFIAIDDNEDGN 131

Query: 114 IGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           +  +   +         V  +    P    + F  +H+ ++
Sbjct: 132 LKEICDEIFGESNFLAQVVWERAYAPINLKKNFSPSHDYML 172



 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 43/128 (33%), Gaps = 18/128 (14%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            G+K     KP  L+ R +   +    I++D F GS T+     +       IE      
Sbjct: 307 GGKKYFSYPKPVKLVERAIQLYSDRDSIVMDFFAGSATTAEAVMRQN-----IE------ 355

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEP---RVAFNLLVERGLIQPGQILTNAQGNISAT 315
           D   +R   VQ           G++      R AF    E GL+   +I        +  
Sbjct: 356 DQGHRRFIMVQLPEKTYHLNKNGEKVPNKGGRTAF----EDGLMSVDEISRERIRRAAKK 411

Query: 316 VCADGTLI 323
           +  D  L 
Sbjct: 412 IKEDNELT 419


>gi|58865225|emb|CAI52508.1| DNA-methyltransferase [Geobacillus stearothermophilus]
          Length = 381

 Score = 68.5 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 54/146 (36%), Gaps = 16/146 (10%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
             +  +        K+HP+ KP  L   I+   TK  + +LD F G G +   A    R 
Sbjct: 129 YPTQGKEGYAHHIRKVHPSPKPPQLTKEIISFFTKENEWVLDYFMGVGGTLLGASLCNRR 188

Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTN 307
            IGI++   YI+   +   + + L       + G   E       L+         IL  
Sbjct: 189 AIGIDLNGFYIEKYKE---AAKALNLDLQHTIQGDAIEILANKQSLI-------SDIL-- 236

Query: 308 AQGNISATVCAD---GTLISGTELGS 330
            +G   + V  D   G ++S  + G 
Sbjct: 237 -KGEKVSLVLIDPPYGDMMSRKKTGE 261



 Score = 43.1 bits (100), Expect = 0.069,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 53/154 (34%), Gaps = 20/154 (12%)

Query: 24  IKGNSISVLEK--------LPAKSVDLIFADPPYNLQLNGQ-----LYRPDHSLVDAVTD 70
           I+G++I +L          L  + V L+  DPPY   ++ +     + +   S     TD
Sbjct: 217 IQGDAIEILANKQSLISDILKGEKVSLVLIDPPYGDMMSRKKTGEAIKKKQDSSATPFTD 276

Query: 71  SWDKFSSFEAYDAF--TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
           S     + EA D +   +  +    + LK  G + +         I    + LN    + 
Sbjct: 277 SPKDLGNMEAADFYKNLKNSVQNSLKFLKKGGHVVIFIKD-----IQPKGKQLNLLHADL 331

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
           I          + G +    H   ++    P + 
Sbjct: 332 IYLINEIDELYYLGTKIWADHSVNLFPYGYPFSY 365


>gi|227875076|ref|ZP_03993221.1| adenine specific DNA methylase [Mobiluncus mulieris ATCC 35243]
 gi|304390319|ref|ZP_07372272.1| adenine specific DNA methylase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|306817363|ref|ZP_07451108.1| adenine specific DNA methylase [Mobiluncus mulieris ATCC 35239]
 gi|227844354|gb|EEJ54518.1| adenine specific DNA methylase [Mobiluncus mulieris ATCC 35243]
 gi|304326075|gb|EFL93320.1| adenine specific DNA methylase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304649804|gb|EFM47084.1| adenine specific DNA methylase [Mobiluncus mulieris ATCC 35239]
          Length = 545

 Score = 68.5 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 57/149 (38%), Gaps = 11/149 (7%)

Query: 20  KDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLY-------RPDHSLVDAVT 69
           ++ II G+++  L+ L  K    VD I+ DPPYN    G +Y       R    L + V 
Sbjct: 43  QNMIIHGDNLEALKALLPKYEGKVDCIYIDPPYNTGNEGWIYNDAVNDPRIKKWLGEVVG 102

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILND 128
              +  S  + +       L    R+L  NG + V  S   +  +G ++  +        
Sbjct: 103 KEGEDLSRHDKWLCMMYPRLRLLHRLLARNGLIAVSISDTELSNLGCIMDEIFGPANRLA 162

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASP 157
               +S P         +  HE +++ + 
Sbjct: 163 CAPVRSEPSGGKDKTALRTGHEYILFYTK 191



 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 46/153 (30%), Gaps = 6/153 (3%)

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
            +W  +      S  + N     ++               +   +        +      
Sbjct: 259 GYWRWSPAHAGMSELLDNPEAAHWEKTSYDPGVVVDGETERWVPYEKIRDVKKSFGWNTW 318

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
            D        +  ++   G K   T KP +L+  I+        I+LD F GSGT+    
Sbjct: 319 LDGYGTNADATAVIKAIFGNKKFDTPKPLSLIEWIIALHGNTDGIVLDSFAGSGTTAHAV 378

Query: 242 KKLR------RSFIGIEMKQDYIDIATKRIASV 268
                     R FI +E+      I  +R+  V
Sbjct: 379 LNSNMYDDADRKFILVELSDYAESITAERVKRV 411


>gi|312622142|ref|YP_004023755.1| DNA methylase N-4/N-6 domain-containing protein
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202609|gb|ADQ45936.1| DNA methylase N-4/N-6 domain protein [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 416

 Score = 68.5 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 33/63 (52%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            G   +P   P  L   ++ S T+  DI+LDPF GSGT    A K  R+ IG+++    I
Sbjct: 27  HGIHSYPAMMPAPLAEFLIQSFTRRNDIVLDPFCGSGTVLYEALKNGRNAIGVDINPLAI 86

Query: 259 DIA 261
            I+
Sbjct: 87  LIS 89



 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
           I  N N +     KI   N +  L+++  ++VDLI   PPY        Y     L    
Sbjct: 217 ITNNSNYV-----KIFHKNILD-LDEVENETVDLILTSPPYGDARTTVAYGQFSRLSLQW 270

Query: 69  TDSWD 73
            + W+
Sbjct: 271 LNLWE 275


>gi|167621143|ref|ZP_02389774.1| putative modification methylase [Burkholderia thailandensis Bt4]
          Length = 963

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 41/76 (53%)

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           R       KL+  Q    ++ R ++ ++ PGD++LDP  GSGT+  V+++  R +I I+ 
Sbjct: 437 RQSGFGDAKLYVVQTATTVIERCILMASDPGDLVLDPTCGSGTTAYVSEQHARRWITIDT 496

Query: 254 KQDYIDIATKRIASVQ 269
            +  + +A  RI   +
Sbjct: 497 SRVALALARARIMGAR 512



 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 62/154 (40%), Gaps = 36/154 (23%)

Query: 2   SQKNSLAINENQNSIFE-------------WKDKIIKGNSISVLEKLPA-----KSVDLI 43
           SQ+++L +  + N + E             W++++I G+S+ V+  L         V  I
Sbjct: 131 SQQDALDLFGDFNGLPEGADRTDFYQHEGHWQNRMILGDSLQVMASLAEREGLRGKVQCI 190

Query: 44  FADPPYNLQLNGQLYRPDHSL----------------VDAVTDSWDKFSSFEAYDAFTRA 87
           + DPPY ++ N        S                 V A  D+W       +Y  + R 
Sbjct: 191 YFDPPYGIKFNSNFQWSTTSRDVKDGNTAHITREPEQVKAFRDTW--RDGIHSYLTYLRD 248

Query: 88  WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
            ++  R +L  +G+++V     N+ R+  +L  +
Sbjct: 249 RVIVFRDLLNESGSVFVQIGVENVHRVRAVLDEV 282


>gi|167560981|ref|ZP_02353897.1| putative modification methylase [Burkholderia oklahomensis EO147]
          Length = 963

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 41/76 (53%)

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           R       KL+  Q    ++ R ++ ++ PGD++LDP  GSGT+  V+++  R +I I+ 
Sbjct: 437 RQSGFGDAKLYVVQTATTVIERCILMASDPGDLVLDPTCGSGTTAYVSEQHARRWITIDT 496

Query: 254 KQDYIDIATKRIASVQ 269
            +  + +A  RI   +
Sbjct: 497 SRVALALARARIMGAR 512



 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 62/154 (40%), Gaps = 36/154 (23%)

Query: 2   SQKNSLAINENQNSIFE-------------WKDKIIKGNSISVLEKLPA-----KSVDLI 43
           SQ+++L +  + N + E             W++++I G+S+ V+  L         V  I
Sbjct: 131 SQQDALDLFGDFNGLPEGADRTDFYRHEGHWQNRMILGDSLQVMASLAEREGLRGKVQCI 190

Query: 44  FADPPYNLQLNGQLYRPDHSL----------------VDAVTDSWDKFSSFEAYDAFTRA 87
           + DPPY ++ N        S                 V A  D+W       +Y  + R 
Sbjct: 191 YFDPPYGIKFNSNFQWSTTSRDVKDGNTAHITREPEQVKAFRDTW--RDGIHSYLTYLRD 248

Query: 88  WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
            ++  R +L  +G+++V     N+ R+  +L  +
Sbjct: 249 RVIVFRDLLNESGSVFVQIGVENVHRVRAVLDEV 282


>gi|301299743|ref|ZP_07205993.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852674|gb|EFK80308.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 634

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 61/207 (29%), Gaps = 17/207 (8%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
           +N     + K+    G+++ VL  L       +D+I+ DPPYN      +Y       D 
Sbjct: 85  QNNGEGKDSKNLFFTGDNLEVLRHLQNNYAGKIDVIYIDPPYNTGNKDFVYPDKFEYSDG 144

Query: 68  VTDSWDKFSSFE--------------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
                      +              A+  F    L   + +L   G ++V    +    
Sbjct: 145 KLKEMFGMDDVQVERLKSIQGKSSHSAWLTFMYPRLYLAKNLLSKKGVIFVSIDDNEYAN 204

Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
           +  +L ++   I  D +             +  + +  +               ++ +  
Sbjct: 205 LYEILTDIYGEIQVDTLIWNKESEGKSGTLKAVSQYRRIHEYIVVAYVNKKDNKFNKIHE 264

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDG 200
           A E  +   +      +GS    N   
Sbjct: 265 ALEGRENEFNTANLAVNGSNEDINHSN 291



 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 49/142 (34%), Gaps = 24/142 (16%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-- 245
             SG E       + +    KP  LL +IL ++T    IILD F GS T+     +L   
Sbjct: 356 TTSGREDFEKLFSKDIFSYPKPIKLLKKILEATTSKESIILDFFAGSSTTAEAVMQLNAK 415

Query: 246 ----RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP 301
               R +I I++ +    +            N E     G +T     F  + E      
Sbjct: 416 DSGSRRYIMIQIPESTFTV----------NSNGEKIPAEGGKTAYEAGFKSIDE------ 459

Query: 302 GQILTNAQGNISATVCADGTLI 323
             I        +A + AD  L 
Sbjct: 460 --ISRERIRRAAAKIKADNDLT 479


>gi|332975330|gb|EGK12227.1| type III restriction-modification system EcoP15I [Kingella kingae
           ATCC 23330]
          Length = 658

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 78/207 (37%), Gaps = 31/207 (14%)

Query: 6   SLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDH 62
              + EN NS    ++ +IKG+++ VL+ L       + +I+ DPPYN   +  +Y+ + 
Sbjct: 116 HNRLPENANS----ENILIKGDNLEVLKHLKHAYKNQIKMIYIDPPYNTGSDDFVYQDNR 171

Query: 63  S-----LVDAVTDSWD-----------KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
                 L +      D           K +S  A+  F    L   R +L+ +G +++  
Sbjct: 172 KFTPEQLAELGGMDLDEAKRVLEFTAKKSNSHSAWLTFMYPRLYIARELLRDDGVIFISI 231

Query: 107 SYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNA----HETLIWASPSPKA 161
             + + ++  +   +     +   VW  S+   +   +   +     HE +I      K+
Sbjct: 232 DGNEVSQLKILCDEIFGESNVEQYVWNLSDFEESSFTKTASHTVRFEHEYIIACYKKNKS 291

Query: 162 KGYTFNYD---ALKAANEDVQMRSDWL 185
            G    Y         N D   R +W 
Sbjct: 292 LGRYKEYRLLDRTDLTNADNDPRGEWF 318



 Score = 60.0 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 20/103 (19%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGI- 251
           D  ++    KP  L+ R+   + +P D+ILD F GSGT+     +L       R FI + 
Sbjct: 412 DDMEVFSFPKPIELIHRLASITIQPKDLILDFFAGSGTTAHAVMQLNTEDNGNRRFICVQ 471

Query: 252 ------EMKQDY-------IDIATKRIASVQPLGNIELTVLTG 281
                 E  + +        DI   RI         E    TG
Sbjct: 472 LPEKTDEKSEAHKAGYQTIFDITKARIEKAAAKIQTENPDYTG 514


>gi|253576045|ref|ZP_04853378.1| site-specific DNA-methyltransferase [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251844620|gb|EES72635.1| site-specific DNA-methyltransferase [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 663

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 53/154 (34%), Gaps = 10/154 (6%)

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
           +LN++VW       +  GR     H T +     P       +YD             + 
Sbjct: 350 VLNNMVWPTLYFGTDGYGRPSLKRHLTFVKKGKVPMTYWADEDYDEPFVLESQSWDHEES 409

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
                  +E            T KP  L+ +I+        I+LDPF GSGT+G    +L
Sbjct: 410 GHSQAGINELDAILGKGHNFETVKPLKLIKKIIHLWCPADGIVLDPFAGSGTTGHAILEL 469

Query: 245 R------RSFIGIEMKQD----YIDIATKRIASV 268
                  R FI IE  ++       +  +RI   
Sbjct: 470 NEIAGTKRRFILIEKGEEEDRYASTLTRERIKRA 503



 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 69/209 (33%), Gaps = 18/209 (8%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPA--KSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           ++ N NSI E  + II G ++  +  L      +DLI  DPPYN   + +    D    D
Sbjct: 56  LSFNDNSI-EGNNIIIDGENLQAMVTLYKYKGQIDLIVTDPPYNTGKDFRY--NDKWDTD 112

Query: 67  AVTDSWDKFSSFEA------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
                  +  + E       +  F    L   + +LKPNG L +       F +G +L  
Sbjct: 113 PNDPDLGELVTLEDGSRHTKWMKFMLPRLQMMKAMLKPNGVLAICIDEREFFHLGMLLNE 172

Query: 121 L-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
           +        I+  + +  P    +    A E ++  +                   E   
Sbjct: 173 VFGEENRIGIINWQKSYSPKNDSKHVSTATEYVLVYAKDKATAK------TNLMPREQNM 226

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQK 208
               W           +N D     PT+K
Sbjct: 227 DSRYWNPDSDPLGVWKKNGDATVATPTEK 255


>gi|327398568|ref|YP_004339437.1| DNA methylase N-4/N-6 domain-containing protein [Hippea maritima
           DSM 10411]
 gi|327181197|gb|AEA33378.1| DNA methylase N-4/N-6 domain protein [Hippea maritima DSM 10411]
          Length = 380

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 4/79 (5%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           Q P  L+ R     TK GD +LDP  GSGT+    ++L R+ IGIE+  D ++ A K I 
Sbjct: 162 QIPHQLMLR----YTKKGDWVLDPLVGSGTTLIECRRLGRNGIGIEINPDVVEKAKKLIE 217

Query: 267 SVQPLGNIELTVLTGKRTE 285
                 N+   ++TG  T+
Sbjct: 218 KEPNRFNVTTDIITGDSTQ 236


>gi|329765952|ref|ZP_08257515.1| DNA modification methylase [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329137583|gb|EGG41856.1| DNA modification methylase [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 465

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 2/106 (1%)

Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT--QKPEALLSRILVSS 220
            Y+  +        D+    D  +     SE+ R K   +LHP   +    L+   L   
Sbjct: 65  NYSKQWSNQLKQRRDLLKIKDQELAFYHLSEKERTKHIHRLHPYLGKFIPQLVEYYLQKY 124

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
            K  D+ILDPF GSGT+ AV  +L    IGI++ +    IA  ++ 
Sbjct: 125 FKVEDLILDPFMGSGTTLAVCSELGMKSIGIDISEFNCMIARAKLE 170


>gi|296243018|ref|YP_003650505.1| putative RNA methylase [Thermosphaera aggregans DSM 11486]
 gi|296095602|gb|ADG91553.1| putative RNA methylase [Thermosphaera aggregans DSM 11486]
          Length = 311

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 38/84 (45%)

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
            D    + S  +R      +  +    P  +   +++  T  GD++LDP  GSGT+   A
Sbjct: 46  PDVSTTVWSFPKRGSWATHKGDYRGNWPPQIPRALILKYTSEGDVVLDPMVGSGTTCIEA 105

Query: 242 KKLRRSFIGIEMKQDYIDIATKRI 265
             L R+ IG+++    + +   R+
Sbjct: 106 VLLGRNCIGVDLNYHAVMLTHHRL 129



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 50/145 (34%), Gaps = 18/145 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KI  G++   L+K+   +VDL+   PPY   +     R +  L              E +
Sbjct: 149 KIYHGDARR-LDKIRDDTVDLVLTHPPYLNIVRYGEERSEGDLSAV--------RGLEEF 199

Query: 82  DAFTRAWLLACRRVLKPNGTL-WVIGSYHNI-------FRIGTMLQNLNFWILNDIV-WR 132
               +       RVLKP  TL  ++G              +   L +  F ++ ++V  +
Sbjct: 200 LVLFKEIAREVYRVLKPGKTLAVLVGDTRIKKHYVPLTHYVLLTLLDTGFVMMEEVVKIQ 259

Query: 133 KSNPMPNFRGRRFQNAHETLIWASP 157
                      R +N    LI+   
Sbjct: 260 HKMKTTREVWSRLRNRDFLLIYHEK 284


>gi|17225519|gb|AAL37449.1|AF328915_3 type II DNA modification enzyme [Helicobacter pylori]
          Length = 343

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 50/136 (36%), Gaps = 7/136 (5%)

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
             M   +GR ++    TL         +    N    K    +   +    I        
Sbjct: 201 KGMLPPKGRHWRTDIATLERWDKEGLIEYSNNNNPRKKIYALEQVGKRVQDI-------W 253

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                    +PT+K   LL  I+ +S+    I+LD F GSGT+   A  L+R FIGI+  
Sbjct: 254 EFKDPQYPSYPTEKNAQLLDLIIKTSSNKNSIVLDCFCGSGTTLKSAFLLQRKFIGIDNS 313

Query: 255 QDYIDIATKRIASVQP 270
              I     ++ ++  
Sbjct: 314 DLAIKACKNKLETITK 329



 Score = 56.9 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 79/203 (38%), Gaps = 23/203 (11%)

Query: 20  KDKIIKG-NSISVL-----EKLPAKSVDLIFADPPYNLQL-----NGQLYRPDHSLVDAV 68
           ++ +I+  N+I++L     + L  K +DLI+ DPP+         NG+     +S    +
Sbjct: 2   QNLLIQAENAIALLFLLNDKNLKGK-IDLIYIDPPFATNNHFTITNGRATTISNSKNGDI 60

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--IL 126
             S DK    + +  F +  L+  + +L   G+++V         +  ML  +       
Sbjct: 61  AYS-DKVVGMD-FIEFLKQRLVLLKELLSEQGSIYVHTDCKIGHYVKVMLDEIFGIQNFR 118

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASP------SPKAKGYTFNYDALKAANEDVQM 180
           N+I   K NP  NF+   + N  + +++ S       +     YT      +    D   
Sbjct: 119 NEITRIKCNP-KNFKRMGYGNIKDMILFYSKGKNPIFNEPKIPYTPQDLEKRFPKIDKDK 177

Query: 181 RSDWLIPICSGSERLRNKDGEKL 203
           R    +PI +  E    +  +  
Sbjct: 178 RRYTTVPIHAPGEVESGECSKAF 200


>gi|217032844|ref|ZP_03438323.1| hypothetical protein HPB128_165g3 [Helicobacter pylori B128]
 gi|298737009|ref|YP_003729539.1| DNA methyltransferase [Helicobacter pylori B8]
 gi|216945427|gb|EEC24091.1| hypothetical protein HPB128_165g3 [Helicobacter pylori B128]
 gi|298356203|emb|CBI67075.1| DNA methyltransferase [Helicobacter pylori B8]
          Length = 141

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 50/134 (37%), Gaps = 7/134 (5%)

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           M   +GR ++    TL         +    N    K    +   +    I          
Sbjct: 1   MLPPKGRHWRTDIATLERWDKEGLIEYSNNNNPRKKIYASEQVGKRVQDI-------WEF 53

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
                  +PT+K   LL  I+ +S+    I+LD F GSGT+   A  L+R FIGI+    
Sbjct: 54  KDPQYPSYPTEKNAQLLDLIIKTSSNKDSIVLDCFCGSGTTLKSAFLLQRKFIGIDNSDL 113

Query: 257 YIDIATKRIASVQP 270
            I     ++ ++  
Sbjct: 114 AIQACKNKLETITK 127


>gi|167856572|ref|ZP_02479277.1| hypothetical protein HPS_06689 [Haemophilus parasuis 29755]
 gi|167852303|gb|EDS23612.1| hypothetical protein HPS_06689 [Haemophilus parasuis 29755]
          Length = 589

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 63/175 (36%), Gaps = 11/175 (6%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQL 57
           + ++     N ++    +  + +I+G+++  L+ L  K    ++ I+ DPPYN      +
Sbjct: 24  LEKQYDFKANSDKPENSKN-NMLIQGDNLLALKSLLPKYEGKINCIYIDPPYNTGNEKWV 82

Query: 58  Y-------RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
           Y       R    L + V    +  S  + +       L    R+L  +G + +    + 
Sbjct: 83  YNDNVNDPRIKKWLGEVVGKEGEDLSRHDKWLCMMYPRLKLLHRLLADDGVIIIHIDENE 142

Query: 111 IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
              + ++L  +     +          P    ++    HE+++    +     + 
Sbjct: 143 YTNLHSILIEIFGKTNDLGTIIWDKRNPKGDSQKISYQHESIVLFGKNQFHTTHK 197



 Score = 59.6 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 50/198 (25%), Positives = 74/198 (37%), Gaps = 41/198 (20%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------ 244
           GS+    K+        KP    + +L S  KP  I+LD F GSGT+      L      
Sbjct: 369 GSDDKFQKEIGIHFENPKPNEFSTELLSSFLKPNSIVLDSFMGSGTTAHAVLNLNAKDGG 428

Query: 245 RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQI 304
            R FIGIEM     +I  +RI  V  +        T K T    +F  +        G+ 
Sbjct: 429 NRQFIGIEMMDYAENITAERIRRV--INGYGSKAETQKGTGGGFSFYTI--------GET 478

Query: 305 LTNAQGNISATVCADGTLISGTELGSI-----H--RVGAKVSGSET--CNGWNF-----W 350
           L ++          DG L +  +L SI     H  ++        +    G N+     +
Sbjct: 479 LFDS----------DGNLNNQADLISIREYIAHSEKLETVFDNHTSGYFLGLNYQTAYIF 528

Query: 351 YFEKLG-ELHSINTLRIL 367
           Y+E       S++ LR L
Sbjct: 529 YYESDQITTLSLDFLRSL 546


>gi|15669639|ref|NP_248452.1| type II R/M system modification methyltransferase
           [Methanocaldococcus jannaschii DSM 2661]
 gi|12229861|sp|Q58843|MTM2_METJA RecName: Full=Modification methylase MjaII; Short=M.MjaII; AltName:
           Full=N-4 cytosine-specific methyltransferase MjaII
 gi|1592093|gb|AAB99457.1| modification methylase, type II R/M system [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 530

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 8/149 (5%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSSTKPGD 225
           ++  K   E +  + DW +     SE+ R K    +HP +      L+   L      GD
Sbjct: 72  FEKRKEWEEKLGFKLDWDLAFDLLSEKERTKHVHGIHPYKGKFIPQLVEYFLKRHFNVGD 131

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS--VQPLGNIELTVLTGKR 283
           II+DPF GSGT+     ++  + IGI++      IA  ++    +Q L  I L +L   +
Sbjct: 132 IIIDPFMGSGTTLVQCMEMGINSIGIDISPFNCLIAEVKLQKYDIQKLKKILLDMLNKTK 191

Query: 284 TEPRVAFNLLVERGLIQPGQILTNAQGNI 312
              +     L +   ++    L       
Sbjct: 192 EFSK----NLGDDEFVKEMDKLIEKYNKK 216



 Score = 36.9 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 55/156 (35%), Gaps = 29/156 (18%)

Query: 23  IIKGNSISV-----LEKLPA-------KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
           II G+S +V     L+K P        K +D IF  PPY  Q++   Y   H+    + D
Sbjct: 377 IINGDSRTVDIEEELKKHPNFYELYKNKKIDGIFTSPPYLGQID---YHEQHAYAYELFD 433

Query: 71  --SWDKF-----------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
               D+             + + Y       L+  +R L  +  ++++ +         +
Sbjct: 434 IPRLDELEIGPKFKGSSKKAQKEYIEGISDVLINMKRFLNEDAKIFIVVNDKKNLY-KEI 492

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
            +     ++ +      N     R   +++  E  +
Sbjct: 493 FEKSGLILVREFKRPVLNRTERDRNPYYESIFELKM 528


>gi|15611116|ref|NP_222767.1| putative type II DNA modification enzyme (methyltransferase)
           [Helicobacter pylori J99]
 gi|4154550|gb|AAD05627.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
           [Helicobacter pylori J99]
          Length = 343

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 50/136 (36%), Gaps = 7/136 (5%)

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
             M   +GR ++    TL         +    N    K    +   +    I        
Sbjct: 201 KGMLPPKGRHWRTDIATLERWDKEGLIEYSNNNNPRKKIYALEQVGKRVQDI-------W 253

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                    +PT+K   LL  I+ +S+    I+LD F GSGT+   A  L+R FIGI+  
Sbjct: 254 EFKDPQYPSYPTEKNAQLLDLIIKTSSNKDSIVLDCFCGSGTTLKSAFLLQRKFIGIDNS 313

Query: 255 QDYIDIATKRIASVQP 270
              I     ++ ++  
Sbjct: 314 DLAIQACKNKLETITK 329



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 80/203 (39%), Gaps = 23/203 (11%)

Query: 20  KDKIIKG-NSISVL-----EKLPAKSVDLIFADPPYNLQL-----NGQLYRPDHSLVDAV 68
           ++ +I+  N+I++L     + L  K +DLI+ DPP+         NG+     +S    +
Sbjct: 2   QNLLIQAENAIALLFLLNDKNLKGK-IDLIYIDPPFATNNHFTITNGRATTISNSKNGDI 60

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--IL 126
             S DK    + +  F +  L+  + +L   G+++V   Y     +  ML  +       
Sbjct: 61  AYS-DKVVGMD-FMEFLKQRLVLLKELLSEQGSIYVHTDYKIGHYVKVMLDEIFGIQNFR 118

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASP------SPKAKGYTFNYDALKAANEDVQM 180
           N+I   K NP  NF+   + N  + +++ S       +     YT      +    D   
Sbjct: 119 NEITRIKCNP-KNFKRIGYGNIKDMILFYSKGKNPIFNEPKIPYTPQDLEKRFPKIDKDK 177

Query: 181 RSDWLIPICSGSERLRNKDGEKL 203
           R    +PI +  E    +  +  
Sbjct: 178 RRYTTVPIHAPGEVESGECSKAF 200


>gi|261414674|ref|YP_003248357.1| Site-specific DNA-methyltransferase (adenine-specific) [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261371130|gb|ACX73875.1| Site-specific DNA-methyltransferase (adenine-specific) [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 592

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 53/150 (35%), Gaps = 10/150 (6%)

Query: 18  EWKDKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLNGQLYRPD-------HSLVDA 67
           + ++KII G+++  L+ L  +    V  I+ DPPYN      +Y  +         L   
Sbjct: 36  KSENKIIHGDNLEALKALLPEYEGRVKCIYIDPPYNTGNENWVYNDNVNSPKIRKWLGQV 95

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
           V    +  +  + +       L   +++L  +G +++    +    +  +   +      
Sbjct: 96  VGKESEDLTRHDKWLCMMYPRLTLLQKLLADDGAIFISIDDNEQANLKLICDEIFGAGNF 155

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
              +   +   +  G   +   E ++    
Sbjct: 156 VTQFIWQSTPGSNTGNDIKVVTEYILMYKK 185



 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 76/226 (33%), Gaps = 29/226 (12%)

Query: 49  YNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
           Y+L+   +  R  ++     T+  D+  +   Y            ++  P+GT    GS 
Sbjct: 201 YDLEDEYKDRRGKYT-----TNKLDRRMTGSHYSESLN------YQIKMPDGTFLYPGS- 248

Query: 109 HNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
                I  +      W    + W   +    F+            W+    +      N 
Sbjct: 249 ----SIDKLKHWNWRWSEAKVAWGIEHGFIVFKNNNGN-------WSVYFKQYCNVNNND 297

Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
           + ++ +     +  D       G+  L      K     KP +L+  IL  +T    IIL
Sbjct: 298 ELIERSLPYQNLLEDESFNSARGTADLMKIMSMKAFDYPKPISLIEEILEIATDKSSIIL 357

Query: 229 DPFFGSGTSGAVAKKL------RRSFIGIEMKQDYIDIATKRIASV 268
           D F GSGT+      L       R FI +EM+     I  +R+  V
Sbjct: 358 DSFAGSGTTAHAVLNLNKQDGGNRKFILVEMEDYADKITAERVRRV 403


>gi|126741181|ref|ZP_01756861.1| adenine specific DNA methylase [Roseobacter sp. SK209-2-6]
 gi|126717704|gb|EBA14426.1| adenine specific DNA methylase [Roseobacter sp. SK209-2-6]
          Length = 544

 Score = 67.7 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 7/81 (8%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSF 248
               + E L  T KP+ L+ RIL  +T PGDI++D F GSGT+G     +       R F
Sbjct: 316 FHEANRETLFSTPKPKRLIRRILQIATNPGDIVMDSFAGSGTTGHAVLDMNKQDGGNRQF 375

Query: 249 IGIEMKQDYI-DIATKRIASV 268
           I +EM +    D   +R+  V
Sbjct: 376 ILVEMDEKIAPDTTGERLRRV 396



 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 68/200 (34%), Gaps = 11/200 (5%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY-------RPDHSLVDAVTD 70
           + +++G+++  L+ L       V  I+ DPPYN      +Y       R    L   V  
Sbjct: 39  NLLVQGDNLEALKALLPYYAGKVKCIYIDPPYNTGNENWVYNDNVNSARIKQWLGKIVGA 98

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDI 129
             D  S  + +       L   R  L+ +G +++    + +  +  ++  +         
Sbjct: 99  QADDLSRHDKWLCMMYPRLRLLREFLREDGVIFISIDDNELHHLILLMNEIFGPTAYVSS 158

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
           +  +     N   +   + HE ++  + + KA             +      SD   P  
Sbjct: 159 IAWQKVFGRNNTAKFISDTHEHIVCFARNIKALELNLLERGEGEDSRYKNPDSDPRGPWT 218

Query: 190 SGSERLRNKDGEKLHPTQKP 209
           S     RN     ++P + P
Sbjct: 219 SSDLSARNPYSLGVYPLRTP 238


>gi|89885966|ref|YP_516164.1| DNA methylase N-4/N-6 [Rhodoferax ferrireducens T118]
 gi|89347964|gb|ABD72166.1| DNA methylase N-4/N-6 [Rhodoferax ferrireducens T118]
          Length = 416

 Score = 67.7 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/272 (18%), Positives = 87/272 (31%), Gaps = 43/272 (15%)

Query: 37  AKSVDLIFADPPYNLQLNGQLYRP---------------------DHSLVDAVTDSWDKF 75
            + + L+   PPY L  N + Y                       D   V A+  S D F
Sbjct: 137 GEPISLVLTSPPYPLA-NPRAYGNVPIAQYVDWLCSMLEPLVRNLDDGAVIALNVSNDVF 195

Query: 76  SSFE----AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ--NLNFWILNDI 129
            +       Y       L     + K +  +W   +          L+   LN       
Sbjct: 196 ETKSPARSTYRERLVIALCDRFALFKMDEIIWNCPNKPPGPIQWASLERFQLNTAWEPVY 255

Query: 130 VWRKSNPMPNFRGRRFQNAH--ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
           V+  +        RR   AH    +       + +  T +  A +         +   IP
Sbjct: 256 VFTNNPHRCLANNRRVLQAHTDRHMALMKKGGETRTRTNSDGAYRIYPGSYGTLTAGRIP 315

Query: 188 ----ICSGSER---------LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
                CS S+          +  +DG  LH    P  L + ++   ++ G ++ D F G 
Sbjct: 316 KNVITCSNSKSDPDLKRAKAMARQDGLPLHGAPMPLELANFLVQYLSEEGSLVADLFAGW 375

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
            T+G  A+   R +I  E   +Y+  + +R +
Sbjct: 376 NTTGYAAQINGRRWISAEKHGEYVAGSAERFS 407


>gi|17225506|gb|AAL37440.1|AF328911_2 type II DNA modification enzyme [Helicobacter pylori]
          Length = 343

 Score = 67.7 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 50/136 (36%), Gaps = 7/136 (5%)

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
             M   +GR ++    TL         +    N    K    +   +    I        
Sbjct: 201 KGMLPPKGRHWRTDIATLERWDKEGLIEYSNNNNPRKKIYALEQAGKRVQDI-------W 253

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                    +PT+K   LL  I+ +S+    I+LD F GSGT+   A  L+R FIGI+  
Sbjct: 254 EFKDPQYPSYPTEKNAQLLDLIIKTSSNKDSIVLDCFCGSGTTLKSAFLLQRKFIGIDNS 313

Query: 255 QDYIDIATKRIASVQP 270
              I     ++ ++  
Sbjct: 314 DLAIQACKNKLETITK 329



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 80/203 (39%), Gaps = 23/203 (11%)

Query: 20  KDKIIKG-NSISVL-----EKLPAKSVDLIFADPPYNLQL-----NGQLYRPDHSLVDAV 68
           ++ +I+  NSI++L     + L  K +DLI+ DPP+         NG+     +S    +
Sbjct: 2   QNLLIQAENSIALLFLLNDKNLKGK-IDLIYIDPPFATNNHFTITNGRATTISNSKNGDI 60

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--IL 126
             S DK    + +  F +  L+  + +L   G+++V   Y     +  ML  +       
Sbjct: 61  AYS-DKVVGMD-FIEFLKQRLVLLKELLSEQGSIYVHTDYKIGHYVKVMLDEIFGIQNFR 118

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASP------SPKAKGYTFNYDALKAANEDVQM 180
           N+I   K NP  NF+   + N  + +++ S       +     YT      +    D   
Sbjct: 119 NEITRIKCNP-KNFKRIGYGNIKDMILFYSKGKNPIFNEPKIPYTPQDLEKRFPKIDKDK 177

Query: 181 RSDWLIPICSGSERLRNKDGEKL 203
           R    +PI +  E    +  +  
Sbjct: 178 RRYTTVPIHAPGEVESGECSKAF 200


>gi|261840194|gb|ACX99959.1| adenine specific DNA methylase [Helicobacter pylori 52]
          Length = 482

 Score = 67.7 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 60/156 (38%), Gaps = 17/156 (10%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSL--------VDAV 68
           K  +IKG+++  L+ L    ++ + +I+ DPPYN + +  +Y  D S         +D  
Sbjct: 89  KHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNDNFIYSDDFSQSNEEILKTLDYS 148

Query: 69  TDSWDKFSSF------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
            +  D   +         + +F    LL  + +LK +G +++    +    +  +   + 
Sbjct: 149 KEKLDYIKNLFGSRCHSGWLSFMYPRLLLAKDLLKQDGVIFISIDDNECANLKILCDEIF 208

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
                               + FQN +E ++  +  
Sbjct: 209 GEGNFLSSLTWLKGNAQNDAQYFQNNYENILVYAKH 244



 Score = 55.4 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 31/56 (55%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +G++ + +   +K+    KP  L+SR++  ST   DIILD F GSGT+     +  
Sbjct: 413 NGTKEVNDLFNQKVFNNPKPTKLISRLIELSTNENDIILDFFAGSGTTAHAVLESN 468


>gi|237720903|ref|ZP_04551384.1| LOW QUALITY PROTEIN: modification methylase [Bacteroides sp. 2_2_4]
 gi|229449738|gb|EEO55529.1| LOW QUALITY PROTEIN: modification methylase [Bacteroides sp. 2_2_4]
          Length = 165

 Score = 67.7 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 43/117 (36%)

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
           + T                +    +  E      D  + I + +     + G  +H  QK
Sbjct: 26  YFTTYLPPKMGWIVWDKGQHGLTMSDGELAWSSFDKALRIITLNRCTIGERGGNIHRCQK 85

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           P  L + IL  + K GD I D   GSG+S   A  L   F   E+ ++Y +   +R 
Sbjct: 86  PVKLYAEILRKNAKEGDKIFDSHLGSGSSRIAAYGLGFDFYATEIDEEYFEAQEERF 142


>gi|303232411|ref|ZP_07319103.1| DNA (cytosine-5-)-methyltransferase [Atopobium vaginae PB189-T1-4]
 gi|302481495|gb|EFL44563.1| DNA (cytosine-5-)-methyltransferase [Atopobium vaginae PB189-T1-4]
          Length = 576

 Score = 67.7 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 68/162 (41%), Gaps = 17/162 (10%)

Query: 1   MSQKNSLAINENQNSIFEWKDK-----IIKGNSISVLEKLP---AKSVDLIFADPPYNLQ 52
           M Q N   + E +    +  D+     +++G+++  L+ L    A  +D+I+ DPPYN  
Sbjct: 59  MMQDNIPVLTEVKEREIKATDENAYNFLLEGDNLHSLKLLEKTHAGKIDVIYIDPPYNTG 118

Query: 53  LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
               +Y       DA  D  D + S   + +F    L   +R+L  +G +++        
Sbjct: 119 NKDFIYD------DAFIDKTDGY-SHSKWLSFMSERLEIAKRLLSDDGVIFISIDDREQS 171

Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
            +  +  ++  +  N+ +        +  G++ +N +  + +
Sbjct: 172 NLHLLCDDI--FGSNNFITSFIWEKTHHTGKQAKNCYCNVDY 211



 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 88/256 (34%), Gaps = 45/256 (17%)

Query: 49  YNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
           Y L    +LY  +  L   + +        E  DA         + +  P+GT++     
Sbjct: 211 YVLAYANKLYGANCKLKSLLVEK----ILTEFLDAPLYNASNNEQTLTFPSGTVYFKNPI 266

Query: 109 HNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAH-ETLIWASPSPKAKGYTFN 167
           H          N  + + N IV +KS+        R++ ++ E ++ +  S  ++     
Sbjct: 267 HINEST-----NKKYKLHNRIVLKKSDSAVEINDIRYEYSNVEPIVMSFKSRWSQKEVDR 321

Query: 168 YDALKAAN----------------EDVQMRSDWLIPICSGSERL-RNKDGEKL------- 203
                                    D    S W I     S+++  N+DG  L       
Sbjct: 322 QIEAGTKYIIKSSGCAIRAVYSDLRDGFNLSPWQIIKTGNSQQVGTNEDGSSLLKKILGE 381

Query: 204 ---HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMK 254
                  KP +L+  ++   T   + ILD F GSGT+     +L       R FI     
Sbjct: 382 TIPFSYPKPISLVKYLVELCTNKKNTILDFFAGSGTTAHAVLELNKEDGGNRKFILCTNN 441

Query: 255 QDYI--DIATKRIASV 268
           ++ I  ++  +RI  V
Sbjct: 442 ENNICEEVTYERIKRV 457


>gi|294676809|ref|YP_003577424.1| type III restriction-modification system RcaSBIIP Mod subunit
           [Rhodobacter capsulatus SB 1003]
 gi|294475629|gb|ADE85017.1| type III restriction-modification system RcaSBIIP, Mod subunit
           [Rhodobacter capsulatus SB 1003]
          Length = 597

 Score = 67.7 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 61/178 (34%), Gaps = 14/178 (7%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPD------HSLVDAVTDS 71
           + II+G+++  L+ L       VD IF DPPYN    G  Y  +         +++    
Sbjct: 40  NLIIQGDNLHALKALMPMYAGKVDCIFIDPPYNTGNEGWAYNDNVNAPMIKEWLNSNPIG 99

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIV 130
            +     + + A     L     +L   G++W+    +   R   +L  +         +
Sbjct: 100 IEDGLRHDKWCAMMWPRLRLLHELLAEWGSIWITLDDNEAHRAKILLDEIFGEDAFVANM 159

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKA----KGYTFNYDALKAANEDVQMRSDW 184
             +   + N       + H+ ++  + +P      K       A    N D   R  W
Sbjct: 160 VWQKRYVANVTALHLSDMHDHVLVYAKNPSEFALGKIGRTEAQAADYKNPDNDPRGPW 217



 Score = 60.4 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 57/142 (40%), Gaps = 15/142 (10%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIE 252
           DG     T KP+ L+SRIL        ++LD F GSGT+     +        R FI  E
Sbjct: 316 DGASPFDTPKPKRLISRILELIGDDDALVLDSFAGSGTTAHAVLEANKRDGGSRRFILCE 375

Query: 253 MKQDYID-IATKRIASVQ---PLGNIELTVLTGKRTEPR--VAFNLLVERGLIQPGQILT 306
           M +DY D +  +R+  V         + T L  +R   R       LV +  +Q  + L 
Sbjct: 376 M-EDYADRLTAERVRRVINGYAFTGTQKTELARERLNWRSIEKAADLVHK--VQAIENLH 432

Query: 307 NAQGNISATVCADGTLISGTEL 328
             + +       DG L+   E 
Sbjct: 433 GHEYDRIKKEVKDGELVVTGEK 454


>gi|218883796|ref|YP_002428178.1| DNA adenine modification methylase [Desulfurococcus kamchatkensis
           1221n]
 gi|218765412|gb|ACL10811.1| DNA adenine modification methylase [Desulfurococcus kamchatkensis
           1221n]
          Length = 317

 Score = 67.7 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 38/78 (48%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           + S  +R         +    P  +   ++   + PGDI+LDP  GSGT+   AK L R+
Sbjct: 50  VWSFPKRGTWATHRGDYRGNWPPQVARLLIERYSNPGDIVLDPMIGSGTTCIEAKLLGRN 109

Query: 248 FIGIEMKQDYIDIATKRI 265
            IG+++  + + +   R+
Sbjct: 110 CIGVDISYEAVILTLHRL 127



 Score = 56.9 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 50/151 (33%), Gaps = 19/151 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I  G++   L ++  +++DL+   PPY                  V     + SS E Y
Sbjct: 155 EIYHGDARR-LSRVRDETIDLVITHPPYF---------NIIKYSSRVDGDLSRASSLEEY 204

Query: 82  DAFTRAWLLACRRVLKPNGTL-WVIGSYHNI-------FRIGTMLQNLNFWILNDIV-WR 132
             +         RVLKP G L  +IG              +  +L    F +  ++V  +
Sbjct: 205 LKWFNEATGEIYRVLKPGGHLGILIGDTRIRKYYVPISHHVLEILLRRGFILREEVVKIQ 264

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
                      R ++    LI+       + 
Sbjct: 265 HKMKTTREVWSRLKDRDFLLIYHEKLYVMRK 295


>gi|17225550|gb|AAL37471.1|AF328924_4 type II DNA modification enzyme [Helicobacter pylori]
          Length = 343

 Score = 67.7 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 50/136 (36%), Gaps = 7/136 (5%)

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
             M   +GR ++    TL         +    N    K    +   +    I        
Sbjct: 201 KGMLPPKGRHWRTDIATLERWDKEGLIEYSNNNNPRKKIYALEQVGKRVQDI-------W 253

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                    +PT+K   LL  I+ +S+    I+LD F GSGT+   A  L+R FIGI+  
Sbjct: 254 EFKDPQYPSYPTEKNAQLLDLIIKTSSNKDSIVLDCFCGSGTTLKSAFLLQRKFIGIDNS 313

Query: 255 QDYIDIATKRIASVQP 270
              I     ++ ++  
Sbjct: 314 NLAIQACKNKLETITK 329



 Score = 56.1 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 80/203 (39%), Gaps = 23/203 (11%)

Query: 20  KDKIIKG-NSISVL-----EKLPAKSVDLIFADPPYNLQL-----NGQLYRPDHSLVDAV 68
           ++ +I+  N+I++L     + L  K +DLI+ DPP+         NG+     +S    +
Sbjct: 2   QNLLIQAENAIALLFLLNDKNLKGK-IDLIYIDPPFATNNHFTITNGRATTISNSKNGDI 60

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--IL 126
             S DK    + +  F +  L+  + +L   G+++V         +  ML  +      +
Sbjct: 61  AYS-DKVVGMD-FIEFLKQRLVLLKELLSEQGSIYVHTDCKIGHYVKVMLDEIFGIQNFI 118

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASP------SPKAKGYTFNYDALKAANEDVQM 180
           N+I   K NP  NF+   + N  + +++ S       +     YT      +    D   
Sbjct: 119 NEITRIKCNP-KNFKRMGYGNIKDMILFYSKGKNPIFNEPKIPYTPQDLEKRFPKIDKDK 177

Query: 181 RSDWLIPICSGSERLRNKDGEKL 203
           R    +PI +  E    +  +  
Sbjct: 178 RRYTTVPIHAPGEVESGECSKAF 200


>gi|17225498|gb|AAL37434.1|AF328909_3 type II DNA modification enzyme [Helicobacter pylori]
          Length = 343

 Score = 67.7 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 50/136 (36%), Gaps = 7/136 (5%)

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
             M   +GR ++    TL         +    N    K    +   +    I        
Sbjct: 201 KGMLPPKGRHWRTDIATLERWDKEGLIEYSNNNNPRKKIYALEQVGKRVQDI-------W 253

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                    +PT+K   LL  I+ +S+    I+LD F GSGT+   A  L+R FIGI+  
Sbjct: 254 EFKDPQYPSYPTEKNAQLLDLIIKTSSNKDSIVLDCFCGSGTTLKSAFLLQRKFIGIDNS 313

Query: 255 QDYIDIATKRIASVQP 270
              I     ++ ++  
Sbjct: 314 NLAIQACKNKLETITK 329



 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 79/203 (38%), Gaps = 23/203 (11%)

Query: 20  KDKIIKG-NSISVL-----EKLPAKSVDLIFADPPYNLQL-----NGQLYRPDHSLVDAV 68
           ++ +I+  N+I++L     + L  K +DLI+ DPP+         NG+     +S    +
Sbjct: 2   QNLLIQAENAIALLFLLNDKNLKGK-IDLIYIDPPFATNNHFTITNGRATTISNSKNGDI 60

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--IL 126
             S DK    + +  F +  L+  + +L   G+++V         +  ML  +       
Sbjct: 61  AYS-DKVVGMD-FIEFLKQRLVLLKELLSEQGSIYVHTDCKIGHYVKVMLDEIFGIQNFR 118

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASP------SPKAKGYTFNYDALKAANEDVQM 180
           N+I   K NP  NF+   + N  + +++ S       +     YT      +    D   
Sbjct: 119 NEITRIKCNP-KNFKRMGYGNIKDMILFYSKGKNPIFNEPKIPYTPQDLEKRFPKIDKDK 177

Query: 181 RSDWLIPICSGSERLRNKDGEKL 203
           R    +PI +  E    +  +  
Sbjct: 178 RRYTTVPIHAPGEVESGECSKAF 200


>gi|120536948|ref|YP_957006.1| DNA methylase N-4/N-6 domain-containing protein [Marinobacter
           aquaeolei VT8]
 gi|120326782|gb|ABM21091.1| DNA methylase N-4/N-6 domain protein [Marinobacter aquaeolei VT8]
          Length = 657

 Score = 67.7 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 72/189 (38%), Gaps = 13/189 (6%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + II+G++   L  L +     + ++  DPPYN          D    D+     D++  
Sbjct: 72  NLIIEGDNFDSLRLLRSTHRGRIRVVMIDPPYNTGNG-----SDWVYNDSFVKKDDRWRH 126

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL-NDIVWRKSNP 136
            + +  F    LL  R +L P+G + V  +  N  ++  M+  +   +     VWR  + 
Sbjct: 127 SK-WLEFMYQRLLIARDLLTPDGVIMVCINDENRSKLELMMDEVMPGLRVGSFVWRVRSG 185

Query: 137 MPNFRGRRFQNAHET-LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
             + +G      HE  L++ +P+   KG   +  +    N D   R  W       +   
Sbjct: 186 GNDTKGALLSMNHEHVLVYGNPAFSFKGDERDQSSYT--NPDDDPRGAWQNDNLVKAHNA 243

Query: 196 RNKDGEKLH 204
           + +     H
Sbjct: 244 KQRPEAYYH 252



 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 52/141 (36%), Gaps = 32/141 (22%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------ 244
           G+   +     K  P  KP +L+  +L  + +P DI LD F GSGT+G    +L      
Sbjct: 418 GTNNYKQILNNKDFPYPKPPSLMRELLRQAMRPDDIALDFFAGSGTTGQAVLELNAEDDG 477

Query: 245 RRSFIGI---EMKQDY------IDIATKRIASVQP-------LGNIELTVLTGK------ 282
            R FI     E            D+  +R+  V         LG     V   K      
Sbjct: 478 NRRFILCSNAEASNKAPDRNICRDVCAERVRRVMSGYGDTPGLGGDFTYVTLDKVEEADL 537

Query: 283 --RTEPRVAFNLLV--ERGLI 299
               EPR AF LL   E G +
Sbjct: 538 MFEAEPRHAFGLLSLRETGYL 558


>gi|294339785|emb|CAZ88147.1| putative N6 adenine-specific DNA methyltransferase [Thiomonas sp.
           3As]
          Length = 923

 Score = 67.7 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 75/190 (39%), Gaps = 29/190 (15%)

Query: 19  WKDKIIKGNSISVLEKLP-----AKSVDLIFADPPYNLQLNGQLY--------------- 58
           W++++I G+S+ V+  L         V +++ DPPY ++                     
Sbjct: 173 WQNRMILGDSLQVMNSLLEFEGLGGQVQMVYMDPPYGVKFGSNFQPFVRKRDVTHGGDSD 232

Query: 59  -RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
              +  +V A  D+W+      +Y  + R  L   + +L  +G+++V  S  NI  +  +
Sbjct: 233 MTREPEMVKAYRDTWE--LGLHSYLTYLRDRLTLAKELLHESGSVFVQISEENIHHVREL 290

Query: 118 LQNLNFW--ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
           L  +     +   I ++K+    +       +  + L+W +       Y  N+   K   
Sbjct: 291 LDEVFGHQNLAGQITFKKTGGQSSSL---IPSIGDYLLWYAKDKGKLKYRQNFY-RKEPG 346

Query: 176 EDVQMRSDWL 185
           E+   + +W+
Sbjct: 347 EEGAKQYNWV 356



 Score = 66.9 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 70/189 (37%), Gaps = 25/189 (13%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVS 219
            A+G T  +    +      + + W     SG         +KL+  Q    ++ R ++ 
Sbjct: 432 MAQGNTLRFINYLSDYPVSPITNIWTDTQTSGF------ASDKLYVVQTLPLVIQRCMLM 485

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA------------S 267
            T PGD++LDP  GSGT+  VA++  R +I  +  +  + +A +R+              
Sbjct: 486 CTDPGDLVLDPTCGSGTTAYVAEQWGRRWITCDTSRVPLALARQRLLTATFPYYELKNPQ 545

Query: 268 VQPLGNIELTVLTGKRTE------PRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
           V P+G  E      ++ E      P +     +        ++L +     S  V   G 
Sbjct: 546 VGPVGGFEYKRRQNRKGEEVGGLVPHITLKS-IANDEAPATEVLVDRPEVNSGVVRVAGP 604

Query: 322 LISGTELGS 330
            +    +  
Sbjct: 605 FVVEATIAP 613


>gi|323184000|gb|EFZ69382.1| hemagglutinin-associated protein [Escherichia coli 1357]
          Length = 145

 Score = 67.7 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 15/103 (14%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           +   P  +VD I  DPPY +       R   ++    TD W + +  E Y          
Sbjct: 1   MATFPGNAVDFILTDPPYLVGFRD---RQGRTIAGDKTDEWLQPACNEMY---------- 47

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
             RVLK +  +     ++ + R     +N  F ++  +V+ ++
Sbjct: 48  --RVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFNQN 88


>gi|324111107|gb|EGC05093.1| DNA methylase [Escherichia fergusonii B253]
          Length = 652

 Score = 67.7 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 72/181 (39%), Gaps = 23/181 (12%)

Query: 1   MSQKNSLAINENQNSIFEWKDK---IIKGNSISVLEKL---PAKSVDLIFADPPYNLQLN 54
           +  K  LA ++  N   E K+    +IKG+++ VL+ +    A+ V +I+ DPPYN   +
Sbjct: 79  LPPKTLLAEDKTHNQQEENKNSQHLLIKGDNLEVLKHMVNAYAEKVKMIYIDPPYNTGKD 138

Query: 55  GQLYRPDHS--------LVDAVTDSWDKF--------SSFEAYDAFTRAWLLACRRVLKP 98
           G +Y  D          L     D   +         SS  A+  F    L   R +++ 
Sbjct: 139 GFVYNDDRKFTPEQLSELAGIDLDEAKRILEFTTKGSSSHSAWLTFIYPRLYIARELMRE 198

Query: 99  NGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
           +GT+++    +   ++  +   + F   N I       + +         HE ++  + +
Sbjct: 199 DGTIFISIDDNEFSQLKLVCDEI-FGEQNHIGDIVWKNVTDNNPSNIAVEHEYIVVYARN 257

Query: 159 P 159
            
Sbjct: 258 K 258



 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 63/228 (27%), Gaps = 32/228 (14%)

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
           + D  D     E Y  + R        +       +       ++     + N       
Sbjct: 284 INDIKDDEKLQEEYTKWFRENKSQLWPLEN-----YKFIDRKGVYSGERGIHNPGKEGYR 338

Query: 128 DIVWRKSNPMPN---FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
             +       P      G RF  A    +                 +K   +D + +   
Sbjct: 339 YDIIHPITKKPCKQPLMGYRFPEATMLKMIDDGRIIFGEDENKLVEIKVYAKDYKQKLSS 398

Query: 185 LIPI----CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           +I I     +   +    +  K     K   LL  ++  +     I+LD F GSGT+   
Sbjct: 399 VINIDGRAGANELKAIFPEMTKPFTNPKTIKLLEELISFACDGKGIVLDFFAGSGTTAHA 458

Query: 241 AKKL------RRSFIGIEMKQD--------------YIDIATKRIASV 268
              L         FI +++ +D                D+  +R+  V
Sbjct: 459 ILNLNKEKGMNYQFITVQLDEDTKDNSDAFKHGFKTIYDLTKERLIRV 506


>gi|238923700|ref|YP_002937216.1| putative type III modification methyltransferase [Eubacterium
           rectale ATCC 33656]
 gi|238875375|gb|ACR75082.1| probable type III modification methyltransferase [Eubacterium
           rectale ATCC 33656]
          Length = 538

 Score = 67.7 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 76/231 (32%), Gaps = 25/231 (10%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQL 57
           + +K S   +          + II G+++  L+ L       +  I+ DPPYN    G +
Sbjct: 24  LERKYSFDESGMHKEDIHSNNMIIHGDNLEALKSLLPQYEGKIKCIYIDPPYNTGNEGWI 83

Query: 58  Y-------RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
           Y       +    L + V    +  S  + +       L+  +++L  +G +++    + 
Sbjct: 84  YNDNVNDPKIKKWLGEVVGKEGEDLSRHDKWLCMMYPRLVLLQKLLADDGAIFISIDDNE 143

Query: 111 IFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
              +  +   +    + +  IV                +    L+++       G     
Sbjct: 144 KDYLKLICNEIFGANYYMGTIVRATGQTTGQDSSGLGSSFDYVLVYSKSCDYIFGGLPLT 203

Query: 169 DALKAANEDVQMRSDWLI-------------PICSGSERLRNKDGEKLHPT 206
           +      ++   R ++                  +    + N DGE+L+PT
Sbjct: 204 EHDLKRFKNEDDRGNYAYDQLRKTGSNDRREDRPNMYYAIINPDGEELYPT 254



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 44/129 (34%), Gaps = 10/129 (7%)

Query: 150 ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPT 206
           + + W       +   + Y    A     +    W     +       K     +     
Sbjct: 277 DLIFWKKTKRNNEEVWWPYVKYYAEGRTKRPSPLWTEIEGNKKASRDVKSILGVDCKFDY 336

Query: 207 QKPEALLSRILVSST-KPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYID 259
            KP  ++ RIL  ++    DI+LD F GSGT+      +       R FI +EM      
Sbjct: 337 PKPIEMIDRILKIASVGKEDIVLDSFAGSGTTAHAVLNMNKSDGGNRKFILVEMGDYADT 396

Query: 260 IATKRIASV 268
           I  +R+  V
Sbjct: 397 ITAERVKRV 405


>gi|300361147|ref|ZP_07057324.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus gasseri JV-V03]
 gi|300353766|gb|EFJ69637.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus gasseri JV-V03]
          Length = 659

 Score = 67.7 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 71/217 (32%), Gaps = 18/217 (8%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
           +N       K+    G+++ VL  L +     VD+I+ DPPYN   +   Y  +    D 
Sbjct: 90  QNNGEGRNSKNLFFTGDNLEVLRHLQSAYANKVDVIYIDPPYNTGQDDFAYPDNFEYTDD 149

Query: 68  VTDSWDKF--------------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
             ++                  SS  A+  F    L   + +LK +G +++    +    
Sbjct: 150 QLENMFGLDENQLARLKSIQGKSSHSAWLTFMYPRLQLSKHLLKQDGVIFISIDDNEDGN 209

Query: 114 IGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
           +  +   +         V  +    P    + F  +H+ ++                + +
Sbjct: 210 LKEICDEIFGESNFLAQVVWERAYAPINLKKNFSPSHDYMLVYGRDANIIETNGISRSDE 269

Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
           + +      +D   P  S    +     E ++P   P
Sbjct: 270 SDSRYNNPDNDPRGPWSSSDISVGPAIQENIYPVTTP 306



 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIE 252
            G+K     KP  L+ R +   +    +I+D F GS T+     +        R FI ++
Sbjct: 385 GGKKYFAYPKPVKLIQRAIQLYSNENSVIMDFFAGSATTAEAVMQQNIEDGGNRKFIMVQ 444

Query: 253 MKQDYIDI 260
           + +   + 
Sbjct: 445 LPEKTYET 452


>gi|167851504|ref|ZP_02477012.1| putative RNA methylase [Burkholderia pseudomallei B7210]
          Length = 398

 Score = 67.7 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ--DYIDIA 261
           +P +    +  +++   +  GD ILDPF GSGT    A K+ R  IG+++     ++  A
Sbjct: 10  YPAKFHAPVARQLISQFSNEGDTILDPFCGSGTLLLEAIKMGRDCIGVDIDPVAAFVSTA 69

Query: 262 T 262
            
Sbjct: 70  K 70


>gi|108562473|ref|YP_626789.1| type II DNA modification enzyme [Helicobacter pylori HPAG1]
 gi|107836246|gb|ABF84115.1| type II DNA modification enzyme [Helicobacter pylori HPAG1]
          Length = 343

 Score = 67.3 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 50/136 (36%), Gaps = 7/136 (5%)

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
             M   +GR ++    TL         +    N    K    +   +    I        
Sbjct: 201 KGMLPPKGRYWRTDVATLERWDKEGLIEYSNNNNPRKKIYALEQVGKRVQDI-------W 253

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                    +PT+K   LL  I+ +S+    I+LD F GSGT+   A  L+R FIGI+  
Sbjct: 254 EFKDPQYPSYPTEKNAQLLDLIIKTSSNKDSIVLDCFCGSGTTLKSAFLLQRKFIGIDNS 313

Query: 255 QDYIDIATKRIASVQP 270
              I     ++ ++  
Sbjct: 314 YLAIQACKNKLETITK 329



 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 79/203 (38%), Gaps = 23/203 (11%)

Query: 20  KDKIIKG-NSISVL-----EKLPAKSVDLIFADPPYNLQL-----NGQLYRPDHSLVDAV 68
           ++ +I+  N+I++L     + L  K +DLI+ DPP+         NG+     +S    +
Sbjct: 2   QNLLIQAENAIALLFLLNDKNLKGK-IDLIYIDPPFATNNHFTITNGRATTISNSKNGDI 60

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--IL 126
             S DK    + +  F +  L+  + +L   G+++V         +  ML  +       
Sbjct: 61  AYS-DKVVGMD-FIEFLKQRLVLLKELLSEQGSIYVHTDCKIGHYVKVMLDEIFGIQNFR 118

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASP------SPKAKGYTFNYDALKAANEDVQM 180
           N+I   K NP  NF+   + N  + +++ S       +     YT      +    D   
Sbjct: 119 NEITRIKCNP-KNFKRMGYGNIKDMILFYSKGKNPIFNEPKIPYTPQDLEKRFPKIDKDK 177

Query: 181 RSDWLIPICSGSERLRNKDGEKL 203
           R    +PI +  E    +  +  
Sbjct: 178 RRYTTVPIHAPGEVESGECSKAF 200


>gi|127461|sp|P25238|MTK1_KLEPN RecName: Full=Modification methylase KpnI; Short=M.KpnI; AltName:
           Full=Adenine-specific methyltransferase KpnI
 gi|43889|emb|CAA43898.1| DNA methylase [Klebsiella pneumoniae]
 gi|149228|gb|AAA25090.1| DNA methylase [Klebsiella pneumoniae]
          Length = 417

 Score = 67.3 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 66/165 (40%), Gaps = 16/165 (9%)

Query: 5   NSLAINENQN--SIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYR 59
               ++E +N   +      I  G++++ L+ L     K++D  + DPPYN   N  +Y 
Sbjct: 21  YEFNMDELKNLSPLDSTSSSIYIGDNLTYLQGLSKTSPKTIDFCYIDPPYNTG-NKIIYH 79

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
            +   V +     D F     + +F    L    ++LK  G + +    +    +  ++ 
Sbjct: 80  DNRKSVSS-----DIFGLHNEWMSFLLPRLFHAHKMLKDTGIIAISIDDYEFAHLKILMD 134

Query: 120 NL---NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
            +   + +I N +V R  N       R   +AHE L+    S  A
Sbjct: 135 KIFGEDNFIGNIVVCRSKNGKG--SKRNIASAHEYLLVYGKSDMA 177



 Score = 53.1 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 14/124 (11%)

Query: 143 RRFQNAHETL------IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
           RR+  + ET       ++AS +     Y  NY +     +   + +D        +  + 
Sbjct: 253 RRWLWSKETARERSWELFASKNGVV--YVKNYSSSHKRIKVRTLWNDSSFYTERATNEIT 310

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIG 250
              G K+  T K    +  I+    KP  +ILD F GSGT+   A  L       R  I 
Sbjct: 311 KIFGSKVFDTPKALNYIMSIINCMAKPDALILDFFAGSGTTAHAAAVLNSLDGGSRKTIL 370

Query: 251 IEMK 254
           +E  
Sbjct: 371 MESN 374


>gi|166368462|ref|YP_001660735.1| hypothetical protein MAE_57210 [Microcystis aeruginosa NIES-843]
 gi|166090835|dbj|BAG05543.1| hypothetical protein MAE_57210 [Microcystis aeruginosa NIES-843]
          Length = 744

 Score = 67.3 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 44/97 (45%)

Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
           K +T+   +  +           L PI    ++ +   G   + T++   +++  + + +
Sbjct: 161 KSFTYQNHSPISRKTFDYSSRPLLEPIEVKKQQAKRHFGVHGYFTKQAWNVVAEYIKNFS 220

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +PGD+ILDPF GSG +   A    R  I I++    I
Sbjct: 221 QPGDVILDPFGGSGVTAIEALMNNRKAISIDINPLAI 257



 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 53/150 (35%), Gaps = 21/150 (14%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY-------------N 50
           K  +    N+N+I     KI+KG +   L  +  +SVD I+ DPPY             N
Sbjct: 412 KKEMTYFINKNTINYA--KIVKGTATD-LSFIENESVDYIYTDPPYGKKIPYLDLSIMWN 468

Query: 51  LQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK---PNGTLWVIGS 107
             L+ ++   D+ L      +  K  S + Y+      +    RVLK       ++    
Sbjct: 469 AWLDLEVTEKDYQLEAIEGGTIQK--SKQEYNQLIAQSIREMYRVLKFERWLSFVFAHKD 526

Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
                 I    ++  F  +  +  +     
Sbjct: 527 PEFWHLILDTAESCGFEYVGAVPQKNGQTS 556


>gi|17225524|gb|AAL37453.1|AF328916_3 type II DNA modification enzyme [Helicobacter pylori]
          Length = 343

 Score = 67.3 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 51/136 (37%), Gaps = 7/136 (5%)

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
             M   +GR ++    TL         +    N    K    +   +    I        
Sbjct: 201 KGMLPPKGRHWRTDIATLERWDKEGLIEYSNNNNPRKKIYALEQAGKRVQDI-------W 253

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                    +PT+K   LL  I+ +S+  G I+LD F GSGT+   A  L+R FIGI+  
Sbjct: 254 EFKDPQYPSYPTEKNAQLLDLIIKTSSNKGSIVLDCFCGSGTTLKSAFLLQRKFIGIDNS 313

Query: 255 QDYIDIATKRIASVQP 270
              I     ++ ++  
Sbjct: 314 NLAIQACKNKLETITK 329



 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 79/203 (38%), Gaps = 23/203 (11%)

Query: 20  KDKIIKG-NSISVL-----EKLPAKSVDLIFADPPYNLQL-----NGQLYRPDHSLVDAV 68
           ++ +I+  N+I++L     + L  K +DLI+ DPP+         NG+     +S    +
Sbjct: 2   QNLLIQAENAIALLFLLNDKNLKGK-IDLIYIDPPFATNNHFTITNGRATTISNSKNGDI 60

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--IL 126
             S DK    + +  F +  L+  + +L   G+++V         +  ML  +       
Sbjct: 61  AYS-DKVVGMD-FIEFLKQRLVLLKELLSEQGSIYVHTDCKIGHYVKVMLDEIFGIQNFR 118

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASP------SPKAKGYTFNYDALKAANEDVQM 180
           N+I   K NP  NF+   + N  + +++ S       +     YT      +    D   
Sbjct: 119 NEITRIKCNP-KNFKRIGYGNIKDMILFYSKGKNPIFNEPKIPYTPQDLEKRFPKIDKDK 177

Query: 181 RSDWLIPICSGSERLRNKDGEKL 203
           R    +PI +  E    +  +  
Sbjct: 178 RRYTTVPIHAPGEVESGECSKAF 200


>gi|222036042|emb|CAP78787.1| Type III restriction-modification system StyLTI enzyme mod (EC
           21172) [Escherichia coli LF82]
 gi|312948924|gb|ADR29751.1| hypothetical protein NRG857_21720 [Escherichia coli O83:H1 str. NRG
           857C]
 gi|324005145|gb|EGB74364.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 57-2]
          Length = 672

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 74/181 (40%), Gaps = 23/181 (12%)

Query: 1   MSQKNSLAINENQNSIFEWKDK---IIKGNSISVLEKL---PAKSVDLIFADPPYNLQLN 54
           +  K  LA +++ N   E K+    +IKG+++ VL+ +    A+ V +I+ DPPYN   +
Sbjct: 74  LPPKTLLAEDKDHNQREENKNSQNLLIKGDNLEVLKHMVNAYAEKVKMIYIDPPYNTGKD 133

Query: 55  GQLYRPDHS-----LVDAVTDSWDK-----------FSSFEAYDAFTRAWLLACRRVLKP 98
           G  Y  D       L D      D+            SS  A+  F    L   R +L+ 
Sbjct: 134 GFAYNDDRKFTPEQLSDLAGIDLDEAKRILEFTTNGSSSHSAWLTFIYPRLYIARELLRE 193

Query: 99  NGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
           +G +++    + + ++ T+   +     N I     N       +   N HE ++  + +
Sbjct: 194 DGVIFISIDENELNQLKTICDEIFGE-ANFIENIVWNKRIPKNDKGIGNIHEYILAYAKN 252

Query: 159 P 159
            
Sbjct: 253 N 253



 Score = 43.4 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 7/73 (9%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSS-TKPGDIILDPFFGSGTSGAVAKKLR---- 245
           G E      G+      KP +L+  +  S  T+  DI LD F GSGT+     +L     
Sbjct: 420 GVEVENLFGGKGYFSYPKPTSLIKTLFGSVKTEDKDIYLDFFAGSGTTAHGILELNIEDG 479

Query: 246 --RSFIGIEMKQD 256
             R+FI +++ ++
Sbjct: 480 RKRNFICVQLDEE 492


>gi|209522912|ref|ZP_03271469.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
 gi|209496499|gb|EDZ96797.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
          Length = 886

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 79/213 (37%), Gaps = 29/213 (13%)

Query: 18  EWKDKIIKGNSISVLEKL-----PAKSVDLIFADPPYNLQL----------------NGQ 56
            W +++I G+S+  +  L      A  V +I+ DPPY ++                   +
Sbjct: 164 NWVNRMILGDSLITMNSLVQYEGMAGKVQMIYMDPPYGVKFGSNFQPFVKKRDVKHNEDE 223

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
            +  +  +V A  D+W+      +Y ++ R  LL  R +L  +G+++V  S  N+  +  
Sbjct: 224 HFTREPEMVKAYRDTWE--LGLHSYLSYLRDRLLLARELLTESGSVFVQISDENVHHVRE 281

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
           ++  + F   N   +           +R  +  + L+W +   +   +   ++       
Sbjct: 282 LMDEV-FGAENFFSFISYKTSSPLGAKRLPSVCDYLLWYAKDKEKVKFKQVFEQKDFGEG 340

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
                 +         ER +    E+L P   P
Sbjct: 341 TEFTWIE-----EPNGERRKMTTEERLKPQNIP 368



 Score = 66.2 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 6/92 (6%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           K +  +    ++ R L+ +T PGDI+LD   GSGT+  VA++  R +I  ++ +  + +A
Sbjct: 456 KQYVVETQPKIIERCLLMTTDPGDIVLDITCGSGTTAYVAEQWGRRWITCDVSRVPLALA 515

Query: 262 TKRIASVQ------PLGNIELTVLTGKRTEPR 287
            +R+ +          GN        KR + +
Sbjct: 516 RQRLLTATFPWYELKDGNSPSGGFVYKRKQNK 547


>gi|13541273|ref|NP_110961.1| adenine-specific DNA methylase [Thermoplasma volcanium GSS1]
 gi|14324657|dbj|BAB59584.1| DNA adenine modification methylase [Thermoplasma volcanium GSS1]
          Length = 347

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 37/61 (60%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           +  ++++  ++  + +LDPF GSGT+   AKKL R+ +GIE+ ++    + + + S+   
Sbjct: 134 IPRQLILRFSRKDEWVLDPFSGSGTTLIEAKKLGRNSLGIEINEEVCKKSLEILNSIDGD 193

Query: 272 G 272
           G
Sbjct: 194 G 194


>gi|126465494|ref|YP_001040603.1| DNA methylase N-4/N-6 domain-containing protein [Staphylothermus
           marinus F1]
 gi|126014317|gb|ABN69695.1| DNA methylase N-4/N-6 domain protein [Staphylothermus marinus F1]
          Length = 342

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 38/83 (45%)

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           D    + S  +R         +    P  +   ++   T PGD +LDP  GSGT+   AK
Sbjct: 62  DISTTVWSFPKRGSWATHRGNYRGNWPPQMARALIQKYTMPGDTVLDPMIGSGTTCIEAK 121

Query: 243 KLRRSFIGIEMKQDYIDIATKRI 265
            L R+ IG+++  + + +   R+
Sbjct: 122 LLGRNCIGVDINYNALMLTLHRL 144



 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 61/182 (33%), Gaps = 26/182 (14%)

Query: 11  ENQNSIFEWKD---KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
            +  SI +  +   +I  G++ + L+K+   S+DL+   PPY    N   Y     +   
Sbjct: 166 NSPISIEDILNAKVEIYHGDARN-LDKISNNSIDLVATHPPYF---NIIRYSRGEKIPGD 221

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNI-------FRIGTMLQ 119
           ++ +       E Y +  +  +    RVLKP   +  ++G              +   L 
Sbjct: 222 LSGA----RKLEEYLSMIQQVISEAYRVLKPGHYMGILVGDTRIHKHYVPITHYVLQTLL 277

Query: 120 NLNFWILNDIV---WRKSNPMPNFRGRRFQN----AHETLIWASPSPKAKGYTFNYDALK 172
              F +  ++V    +       +   + ++     HE L         K Y     +  
Sbjct: 278 KTGFILKEEVVKIQHKMKTTREVWSKLKNKDFLLIYHEKLFILRKPINKKEYRKYKYSSY 337

Query: 173 AA 174
             
Sbjct: 338 MK 339


>gi|208435386|ref|YP_002267052.1| type III R-M system modification enzyme [Helicobacter pylori G27]
 gi|208433315|gb|ACI28186.1| type III R-M system modification enzyme [Helicobacter pylori G27]
          Length = 461

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 70/186 (37%), Gaps = 20/186 (10%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHS--------LVDAV 68
           K  +IKG+++  L+ L    ++ + +I+ DPPYN + +  +Y  D S         +D  
Sbjct: 89  KHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNDNFIYGDDFSQSNEEVLKQLDYS 148

Query: 69  TDSWDKFSSF------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL- 121
            +  D   +         + +F    LL  R +LK +G +++    +   ++  +   + 
Sbjct: 149 KEKLDYIKNLFGSKCHSGWLSFMYPRLLLARDLLKQDGVIFISIDDNECAQLKLLCDEIF 208

Query: 122 --NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
               ++   I   K+ P  N    +  +     I+       K         +   +   
Sbjct: 209 GEGNFVAQFIWHSKNKPSGNTTEDKTIDTRTEYIFCYQKYNFKANKHENTKEELEEKGYI 268

Query: 180 MRSDWL 185
           ++ ++ 
Sbjct: 269 LKDEYF 274



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 28/47 (59%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +GEK+    KP  L++R++  ST  GDIILD F GSGT+     +  
Sbjct: 401 NGEKIFSYPKPLKLINRLIELSTNEGDIILDFFAGSGTTAHAVLESN 447


>gi|56419951|ref|YP_147269.1| type III restriction-modification system, methyltransferase
           [Geobacillus kaustophilus HTA426]
 gi|56379793|dbj|BAD75701.1| type III restriction-modification system, methyltransferase
           [Geobacillus kaustophilus HTA426]
          Length = 478

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 60/191 (31%), Gaps = 5/191 (2%)

Query: 24  IKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV-TDSWDKFSSFE 79
           I+G+++  L+ L    A ++ +I+ DPPYN                 V +   ++  +  
Sbjct: 90  IEGDNLEALKLLRTSHAGTIQMIYIDPPYNTGKVLTYKDNWRKGKAVVPSGIQEEARAHA 149

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMP 138
            +       L   R +L   G +++         +  M   +            +    P
Sbjct: 150 GWLNMMYPRLWVARELLAETGAIFISIDDTEQANLRKMCDEIFGERNFVATFIWQRAFSP 209

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
               +     H+ ++  + +     +       +A        +D   P  SG   +   
Sbjct: 210 VNMNKFASRNHDFILCYAKNIDRLAWYGLPRHPEADGRYANPDNDPRGPWTSGDLSVGPP 269

Query: 199 DGEKLHPTQKP 209
             EK++    P
Sbjct: 270 IPEKIYEIVTP 280



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 39/107 (36%), Gaps = 25/107 (23%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV-----AKKLRRSFIGI--------EM 253
            KP  L+ R++  +T+  D+ILD F GS T+        A+   R    +        E 
Sbjct: 366 PKPVKLIQRMVALTTRDDDLILDFFSGSATTAHAVMQQNAEDGGRRSFLMVQLPEPLAET 425

Query: 254 KQDY-------IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
              Y        DI  +RI         E  V    +TE  + F + 
Sbjct: 426 SAAYRAGFRTICDIGRERIRRA-----GEKIVRETGKTELDIGFRVF 467


>gi|300692137|ref|YP_003753132.1| hypothetical protein RPSI07_2502 [Ralstonia solanacearum PSI07]
 gi|299079197|emb|CBJ51868.1| hypothethical protein [Ralstonia solanacearum PSI07]
          Length = 139

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 9/83 (10%)

Query: 164 YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKP 223
           Y +   A +    D      W I   +            LHPT KP  L  R + +S++P
Sbjct: 30  YGWAKGAQRHWCSDRDQGDVWQIKKPA---------RNDLHPTMKPAELAERAIRNSSRP 80

Query: 224 GDIILDPFFGSGTSGAVAKKLRR 246
           GD++LD F GSGT+   A+K  R
Sbjct: 81  GDVVLDAFGGSGTTLIAAEKAAR 103


>gi|218295753|ref|ZP_03496549.1| Site-specific DNA-methyltransferase (adenine-specific) [Thermus
           aquaticus Y51MC23]
 gi|218243912|gb|EED10439.1| Site-specific DNA-methyltransferase (adenine-specific) [Thermus
           aquaticus Y51MC23]
          Length = 530

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 45/122 (36%), Gaps = 29/122 (23%)

Query: 204 HPTQKPEALLSRILVSSTKPGD--IILDPFFGSGTSGAVAKKL------RRSFIGIEMKQ 255
            PT KP  LL RIL  +T P D  I+LD F GSGT+G    K        R FI +E+  
Sbjct: 329 FPTPKPTRLLQRILQIATNPHDGDIVLDSFAGSGTTGHAVLKQNAADGGNRRFILVELDP 388

Query: 256 D-YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISA 314
                I  +R+                   E    F        ++ G+ L    G I  
Sbjct: 389 HIARSITRRRLEYAA--------------REHGSGFQ------YLRLGETLFTPDGRIRE 428

Query: 315 TV 316
            V
Sbjct: 429 GV 430



 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 60/155 (38%), Gaps = 11/155 (7%)

Query: 18  EWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHS-------LVDA 67
           E  + +++G+++  L+ L       V L++ DPPYN    G +Y  + +       L   
Sbjct: 34  EGDNLLVEGDNLEALKALLPQYRGRVKLVYIDPPYNTGNEGWVYNDNVNSPEIRDWLGKV 93

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWIL 126
           V    +  S  + + +     L     +L+ +G+LW+    + + R   +L  +      
Sbjct: 94  VGPEAEDLSRHDKWLSMMYPRLRLLHELLREDGSLWMSIDDNEVHRARMLLDEIFGSQNF 153

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
              +  +           F + H+ ++  +   K+
Sbjct: 154 VATLIWQKKYSTQNDAIYFSDMHDYILVYAKRKKS 188


>gi|325965444|ref|YP_004243349.1| DNA modification methylase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323471531|gb|ADX75215.1| DNA modification methylase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 611

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 38/76 (50%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           IP  + S +  +      +PT+ P   +   +++S++P  ++LDPF GSG +G  A    
Sbjct: 31  IPTDTSSSKGSSAYQVHTYPTKVPPGAIEPFILASSEPDSVVLDPFCGSGMTGLAALNTG 90

Query: 246 RSFIGIEMKQDYIDIA 261
           R  +  ++    + +A
Sbjct: 91  RRALLSDLAPGAVHLA 106



 Score = 43.4 bits (101), Expect = 0.053,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 42/129 (32%), Gaps = 17/129 (13%)

Query: 32  LEKLPAKSVDLIFADPPYNLQ-LNGQLYRPDHSLVDAVTDSWDKF------------SSF 78
           L  LP+ S+D +F DPP+      G       S +  VTD  ++              S 
Sbjct: 381 LSWLPSSSIDYVFTDPPFGANLFYGDCNVVWESWLGDVTDLTEEIVVNKSLPSTAGGKSL 440

Query: 79  EAYDAFTRAWLLACRRVLKPNGT---LWVIGSYHNIFRIGTMLQNLNFWILNDIVW-RKS 134
           + Y+          RRVL P      ++          +     +      +  V  +  
Sbjct: 441 DDYEKLLSGAFSEVRRVLAPGARASVVFHNADDKVWSALLAATDHAGLVQTDVSVLDKMQ 500

Query: 135 NPMPNFRGR 143
             M  ++GR
Sbjct: 501 RSMKGYKGR 509


>gi|224023936|ref|ZP_03642302.1| hypothetical protein BACCOPRO_00653 [Bacteroides coprophilus DSM
           18228]
 gi|224017158|gb|EEF75170.1| hypothetical protein BACCOPRO_00653 [Bacteroides coprophilus DSM
           18228]
          Length = 468

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 66/196 (33%), Gaps = 15/196 (7%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
             +I+G+++  L  L       +D+I+ DPPYN      +Y       D+  D  D +  
Sbjct: 77  HILIEGDNLEALATLAYTHEGKIDVIYIDPPYNTGNKDFIYN------DSYVDKEDSYRH 130

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNP 136
            + + +F    L   +++L   G +++    +   ++  +   +         +  +   
Sbjct: 131 SK-WLSFMSRRLKIAKKLLSERGMIFMSIDDNEQAQLKLLCDEVFGQENFVASILWQKIH 189

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTF----NYDALKAANEDVQMRSDWLIPICSGS 192
                 +     H+ ++  +                   +  N D   R  W       +
Sbjct: 190 SIKNDAKYLSVNHDFILMYAKDINFININLLKRTETMNSRYKNPDNDPRGPWQSGDLVAN 249

Query: 193 ERLRNKDGEKLHPTQK 208
           E   N + + + PT K
Sbjct: 250 ETRTNGNYDVVGPTGK 265



 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 50/126 (39%), Gaps = 11/126 (8%)

Query: 150 ETLIWASPSPKAKGYTFNYDA--LKAANEDVQMRSDWLIPICSGS-ERLRNKDGEKLHPT 206
           E  IW   +  +      Y +   +    D    SD +     G+ E     D + L   
Sbjct: 288 EKRIWFGKNGTSFPRKKRYLSEVQQGRTPDTWWTSDEVGHNQEGARELKSLLDDKLLFSY 347

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYI-- 258
            KP  L+SRIL  S+    IILD F GSGT+     +L       R  I +   ++ I  
Sbjct: 348 PKPSRLISRILQISSLEYSIILDFFAGSGTTLHATMQLNAEDGGHRQCILVTNNENNICE 407

Query: 259 DIATKR 264
           ++  +R
Sbjct: 408 EVTYER 413


>gi|313900238|ref|ZP_07833734.1| conserved hypothetical protein [Clostridium sp. HGF2]
 gi|312954947|gb|EFR36619.1| conserved hypothetical protein [Clostridium sp. HGF2]
          Length = 238

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 39/78 (50%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           I +  +R      +  +       +   +++  T+  D++LD F GSGT+   AK L R+
Sbjct: 11  IWNFPDRGNWATHKGDYRGNWSPHVPKNLILKYTEQKDLVLDCFVGSGTTLIEAKLLDRN 70

Query: 248 FIGIEMKQDYIDIATKRI 265
            IGI++ +  ++I   R+
Sbjct: 71  AIGIDINKKALEITRNRL 88



 Score = 43.8 bits (102), Expect = 0.040,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 61/184 (33%), Gaps = 38/184 (20%)

Query: 1   MSQKNSLAINENQNSIFEWKDKI------------IKGNSISVLEKLPAKSVDLIFADPP 48
           +  +N++ I+ N+ ++   ++++              G++   L+ +   S+D I   PP
Sbjct: 66  LLDRNAIGIDINKKALEITRNRLNFDCNNNAHIQLHLGDA-QNLKMVKDNSIDFICTHPP 124

Query: 49  YNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGS 107
           Y       + +   ++ + +++       +  + A          RVLKP+    ++IG 
Sbjct: 125 Y-----ADIIKYSKNIENDISN-----LEYNEFLAHMNQVSKELYRVLKPSHFCSFMIGD 174

Query: 108 YHNI-------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN-------AHETLI 153
                      F       N  F +   I+  + N                   AHE + 
Sbjct: 175 IRKKGNVIPLGFLTMQTFINNGFTLKEIIIKEQHNCSSTSYWNDKSKTLGFYLLAHEYIF 234

Query: 154 WASP 157
               
Sbjct: 235 VLYK 238


>gi|329119560|ref|ZP_08248243.1| adenine specific DNA methylase [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464324|gb|EGF10626.1| adenine specific DNA methylase [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 552

 Score = 66.9 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 48/125 (38%), Gaps = 6/125 (4%)

Query: 150 ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
           E  ++       +   +     +   +        L      S  L+     K+  T KP
Sbjct: 274 ENKLYFKKDNDGEWKVYYKYYFENRTKRPSDLWTDLDGNKKASIELKEIFASKVFETPKP 333

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYIDIATK 263
            ALL +IL  +  P  IILD F GSGT+      L       R FIGIEM     ++  +
Sbjct: 334 VALLEKILTIAASPNAIILDSFIGSGTTAHAVLNLNRKDGGNRRFIGIEMMDYAENVTAE 393

Query: 264 RIASV 268
           RI  V
Sbjct: 394 RIRRV 398



 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 45/111 (40%), Gaps = 10/111 (9%)

Query: 21  DKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLNGQLY-------RPDHSLVDAVTD 70
           + +I G+++  L+ L  +    ++ I+ DPPYN    G +Y       R    L + V  
Sbjct: 43  NLLIHGDNLLALKSLLPEFGGRINCIYIDPPYNTGNEGWVYNDNVNDPRIQKWLGEVVGR 102

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
             +  S  + +       L   +++L  +G +++    +    +  +   +
Sbjct: 103 EGEDLSRHDKWLCMMYPRLKLLKQLLADDGVIFISIDDNEQAALKLVCDEI 153


>gi|17225502|gb|AAL37437.1|AF328910_2 type II DNA modification enzyme [Helicobacter pylori]
          Length = 343

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 50/136 (36%), Gaps = 7/136 (5%)

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
             M   +GR ++    TL         +    N    K    +   +    I        
Sbjct: 201 KGMLPPKGRHWRTDIATLERWDKEGLIEYSNNNNPRKKIYALEQAGKRVQDI-------W 253

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                    +PT+K   LL  I+ +S+    I+LD F GSGT+   A  L+R FIGI+  
Sbjct: 254 EFKDPQYPSYPTEKNAQLLDLIIKTSSNKDSIVLDCFCGSGTTLKSAFLLQRKFIGIDNS 313

Query: 255 QDYIDIATKRIASVQP 270
              I     ++ ++  
Sbjct: 314 GLAIQACKNKLETITK 329



 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 79/203 (38%), Gaps = 23/203 (11%)

Query: 20  KDKIIKG-NSISVL-----EKLPAKSVDLIFADPPYNLQL-----NGQLYRPDHSLVDAV 68
           ++ +I+  N+I++L     + L  K +DLI+ DPP+         NG+     +S    +
Sbjct: 2   QNLLIQAENAIALLFLLNDKNLKGK-IDLIYIDPPFATNNHFTITNGRATTISNSKNGDI 60

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--IL 126
             S DK    + +  F +  L+  + +L   G+++V         +  ML  +       
Sbjct: 61  AYS-DKVVGMD-FIEFLKQRLVLLKELLSEQGSIYVHTDCKIGHYVKVMLDEIFGIQNFR 118

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASP------SPKAKGYTFNYDALKAANEDVQM 180
           N+I   K NP  NF+   + N  + +++ S       +     YT      +    D   
Sbjct: 119 NEITRIKCNP-KNFKRIGYGNIKDMILFYSKGKNPIFNEPKIPYTPQDLEKRFPKIDKDK 177

Query: 181 RSDWLIPICSGSERLRNKDGEKL 203
           R    +PI +  E    +  +  
Sbjct: 178 RRYTTVPIHAPGEVESGECSKAF 200


>gi|317013475|gb|ADU80911.1| putative type II DNA modification enzyme (methyltransferase)
           [Helicobacter pylori Gambia94/24]
          Length = 343

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 50/136 (36%), Gaps = 7/136 (5%)

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
             M   +GR ++    TL         +    N    K    +   +    I        
Sbjct: 201 KGMLPPKGRHWRTDIATLERWDKEGLIEYSNNNNPRKKIYALEQVGKRVQDI-------W 253

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                    +PT+K   LL  I+ +S+    I+LD F GSGT+   A  L+R FIGI+  
Sbjct: 254 EFKDPQYPSYPTEKNAQLLDLIIKTSSNKDSIVLDCFCGSGTTLKSAFLLQRKFIGIDNS 313

Query: 255 QDYIDIATKRIASVQP 270
              I     ++ ++  
Sbjct: 314 GLAIKACKNKLETITK 329



 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 79/203 (38%), Gaps = 23/203 (11%)

Query: 20  KDKIIKG-NSISVL-----EKLPAKSVDLIFADPPYNLQL-----NGQLYRPDHSLVDAV 68
           ++ +I+  NSI++L     + L  K +DLI+ DPP+         NG+     +S    +
Sbjct: 2   QNLLIQAENSIALLFLLNDKNLKGK-IDLIYIDPPFATNNHFTITNGRATTISNSKKGDI 60

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--IL 126
             S DK      +  F +  L+  + +L   G+++V   Y     +  ML  +       
Sbjct: 61  AYS-DKVVGMN-FIEFLKQRLVLLKELLSEQGSIYVHTDYKIGHYVKVMLDEIFGIQNFR 118

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASP------SPKAKGYTFNYDALKAANEDVQM 180
           N+I   K NP  NF+   + N  + +++ S       +     YT      +    D   
Sbjct: 119 NEITRIKCNP-KNFKRIGYGNIKDMILFYSKGKNPIFNEPKIPYTPQDLEKRFPKIDKDK 177

Query: 181 RSDWLIPICSGSERLRNKDGEKL 203
           R    +PI +  E    +  +  
Sbjct: 178 RRYTTVPIHAPGEVESGECSKAF 200


>gi|297571356|ref|YP_003697130.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296931703|gb|ADH92511.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 626

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 76/224 (33%), Gaps = 27/224 (12%)

Query: 9   INENQNSIFEW---KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQ---------- 52
           + + +NS+ +W   ++  I+G+++ VL+ L       + +I+ DPPYN            
Sbjct: 79  MPDKENSV-DWDATQNVFIEGDNLEVLKVLQKHYYGQIKMIYIDPPYNTGNDFVYADNFT 137

Query: 53  ------LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
                 L           +   ++S  +F S   +       L   R +L  +G + V  
Sbjct: 138 DSIGNYLEITGQADGGGRLSTNSESAGRFHSN--WLNMMYPRLKLARSLLAEDGAIAVSI 195

Query: 107 SYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
               + R+  ML  +         +  +    P    +RF + H+ ++    S K K   
Sbjct: 196 DDDELPRLRMMLDEIFGASNFYACICWQKKYSPANDAKRFSDMHDFILVYQRSDKFKRGL 255

Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
           F                D      +G   +R       +P Q P
Sbjct: 256 FPRTEENNKPYRYDD-GDGRGAYRTGDLSVRTYSAANDYPIQNP 298



 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 49/127 (38%), Gaps = 25/127 (19%)

Query: 199 DGEKLHPTQKPEALLSRILVSST--KPGDIILDPFFGSGTSGAV--AKKL----RRSFIG 250
           D   +  T KP  LL R+L   T  +  D++LD F GSGT+     A+ +     R  I 
Sbjct: 377 DTTAVFDTPKPTRLLRRLLQVCTSSETEDVVLDFFAGSGTTAHAVMAQNIEDGGNRRCIS 436

Query: 251 IEMKQ--------------DYIDIATKRIASV-QPLGNIELTVLTGKRTEPRVAFNL--L 293
           +++ +                 DI+ +RI      +   E   L G+     V F    L
Sbjct: 437 VQLPEPLAGNALNSVLGITTIADISRERIRRAGAKILEEESAKLDGRADSLDVGFRAYKL 496

Query: 294 VERGLIQ 300
           V+    +
Sbjct: 497 VDTNFTK 503


>gi|261366068|ref|ZP_05978951.1| DNA (cytosine-5-)-methyltransferase [Neisseria mucosa ATCC 25996]
 gi|288565327|gb|EFC86887.1| DNA (cytosine-5-)-methyltransferase [Neisseria mucosa ATCC 25996]
          Length = 185

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 58/152 (38%), Gaps = 20/152 (13%)

Query: 27  NSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHS--------LVDAVTDSWDKF 75
           +++ VL+ L      SV +I+ DPPYN   +G +Y+ D          L +   D   + 
Sbjct: 1   DNLEVLKHLKNAYANSVKMIYIDPPYNTGSDGFVYQDDRKFTPEELARLANIDEDEAARI 60

Query: 76  SSF--------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWIL 126
             F         A+  F    L   R +LK +G +++    +   ++  +   +      
Sbjct: 61  LDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVIFISIDDNEAAQLKLLCDEVFGEGNF 120

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
            + +  +    P    + F   H+ LI  + +
Sbjct: 121 VEQIIWEKKFSPQNDAKYFSENHDYLICYAKN 152


>gi|319644070|ref|ZP_07998629.1| hypothetical protein HMPREF9011_04232 [Bacteroides sp. 3_1_40A]
 gi|317384418|gb|EFV65386.1| hypothetical protein HMPREF9011_04232 [Bacteroides sp. 3_1_40A]
          Length = 155

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 49/163 (30%), Gaps = 20/163 (12%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           D I   + I  ++ +   SVD + AD PY +     L R + +        WD+    EA
Sbjct: 5   DNIYNMDCIEGMKLMANGSVDAVIADLPYGV-----LNRSNKAA------HWDRQIPLEA 53

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                       RR+ KP   + +      IF    ML     W  N +  +        
Sbjct: 54  LWE-------QYRRITKPGSPVILFA--QGIFSARLMLSQPRMWRYNLVWRKDRVTGHLN 104

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
             R     HE +I                  +    D   R+ 
Sbjct: 105 ANRMPLRQHEDIIVFYDRQPVYHPQMMPCPPERKIMDGARRTV 147


>gi|281421728|ref|ZP_06252727.1| methyltransferase [Prevotella copri DSM 18205]
 gi|281404223|gb|EFB34903.1| methyltransferase [Prevotella copri DSM 18205]
          Length = 663

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 56/148 (37%), Gaps = 10/148 (6%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
             +I+G+++  L  L    A  +D+I+ DPPYN          D    DA  D  D + +
Sbjct: 90  HILIEGDNLEALTALSYTHAGKIDVIYIDPPYNTGNK------DFKYNDAYVDKEDAYYN 143

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            + + +F    L   + +LK +G +++      + ++  +   +        + R +   
Sbjct: 144 SK-WLSFMNKRLKIAKSLLKEDGVIFISIGDDEVSQLKILCDEIFSRQCLGFLPRIAKSG 202

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYT 165
                         L++   +   KG+ 
Sbjct: 203 SKQGTYFRPTKDYILVYCKNTEMVKGFH 230



 Score = 51.1 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 77/232 (33%), Gaps = 28/232 (12%)

Query: 51  LQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
           +  NG+ +R  HSL  A  D      +   Y                P+GTL +   +  
Sbjct: 242 VDENGRNFRKAHSLFQASLDPLRGCKNQRYYIE-------------APDGTLILPPGHTM 288

Query: 111 IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF---QNAHETLIWASPSPKAKGYTFN 167
                     +      D VWR S      +  R    ++    LI +  +         
Sbjct: 289 PLENEDAAH-IAPATRADKVWRWSYQSYLAKKDRIMFSESKKSPLIDSYGNHTDWNVYEK 347

Query: 168 YDALKAANEDVQM--RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
               +  + D+      D +    + S      +     P  KP  L++ ++  + KP D
Sbjct: 348 KYEDEETDGDIDYNLPDDVIYDYLNSSATTYLNNMGIDFPFSKPWELIAYLIAITEKPSD 407

Query: 226 I-ILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYI--DIATKRIASV 268
           I +LD F GS T+     K+       R  I     ++ I  ++A  RI  V
Sbjct: 408 ITVLDFFAGSATTLDAIMKMNDGDGGHRKGILATNNENNICEEVAHPRIYKV 459


>gi|261837517|gb|ACX97283.1| adenine methyltransferase [Helicobacter pylori 51]
          Length = 343

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 50/134 (37%), Gaps = 7/134 (5%)

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
             M   +GR ++    TL         +    N    K    +   +    I        
Sbjct: 201 KGMLPPKGRHWRTDVATLERWDKEGLIEYSNNNNPRKKIYALEQVGKRVQDI-------W 253

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                    +PT+K   LL  I+ +S+    I+LD F GSGT+   A  L+R FIGI+  
Sbjct: 254 EFKDPQYPSYPTEKNAQLLDLIIKTSSNKDSIVLDCFCGSGTTLKSAFLLQRKFIGIDNS 313

Query: 255 QDYIDIATKRIASV 268
              I     ++ ++
Sbjct: 314 CLAIQACKNKLETI 327



 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 79/203 (38%), Gaps = 23/203 (11%)

Query: 20  KDKIIKG-NSISVL-----EKLPAKSVDLIFADPPYNLQL-----NGQLYRPDHSLVDAV 68
           ++ +I+  N+I++L     + L  K +DLI+ DPP+         NG+     +S    +
Sbjct: 2   QNLLIQAENAIALLFLLNDKNLKGK-IDLIYIDPPFATNNHFTITNGRATTISNSKNGDI 60

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--IL 126
             S DK    + +  F +  L+  + +L   G+++V         +  ML  +       
Sbjct: 61  AYS-DKVVGMD-FIEFLKQRLVLLKELLSEQGSIYVHTDCKIGHYVKVMLDEIFGIQNFR 118

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASP------SPKAKGYTFNYDALKAANEDVQM 180
           N+I   K NP  NF+   + N  + +++ S       +     YT      +    D   
Sbjct: 119 NEITRIKCNP-KNFKRMGYGNIKDMILFYSKGKNPIFNEPKIPYTPQDLEKRFPKIDKDK 177

Query: 181 RSDWLIPICSGSERLRNKDGEKL 203
           R    +PI +  E    +  +  
Sbjct: 178 RRYTTVPIHAPGEVESGECSKAF 200


>gi|297526226|ref|YP_003668250.1| putative RNA methylase [Staphylothermus hellenicus DSM 12710]
 gi|297255142|gb|ADI31351.1| putative RNA methylase [Staphylothermus hellenicus DSM 12710]
          Length = 338

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 40/83 (48%)

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           D    + S  +R         +    P  +   ++++ T PG+ +LDP  GSGT+   AK
Sbjct: 59  DISTTVWSFPKRGSWATHRGDYRGNWPPQMARALILAYTMPGETVLDPMIGSGTTCIEAK 118

Query: 243 KLRRSFIGIEMKQDYIDIATKRI 265
            L R+ IG+++  + + +   R+
Sbjct: 119 LLGRNCIGVDINYNAVILTLHRL 141



 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 58/176 (32%), Gaps = 24/176 (13%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           I + + +I  G++ + L+K+ + S+DL+   PPY    N   Y     +   ++ +    
Sbjct: 170 ILKARVEIYHGDARN-LDKISSNSIDLVATHPPY---YNIIRYSRTKKIPGDLSGA---- 221

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNI--------------FRIGTMLQN 120
              E Y A  +       RVLKP   L  +IG                    + G +L+ 
Sbjct: 222 RRLEEYLAMIQQVGKEAFRVLKPGRILGILIGDTRIHKHYVPITHHVLETLLKTGFILKE 281

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY-TFNYDALKAAN 175
               I + +   +               HE L         K Y  + Y      N
Sbjct: 282 EVVKIQHKMKTTREIWSKLKNKDFLLIYHEKLFILRKPIDKKEYRKYKYSTYMKLN 337


>gi|289168090|ref|YP_003446359.1| adenine-specific DNA methylase [Streptococcus mitis B6]
 gi|288907657|emb|CBJ22494.1| adenine-specific DNA methylase [Streptococcus mitis B6]
          Length = 712

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/186 (12%), Positives = 58/186 (31%), Gaps = 23/186 (12%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           +  I G+++ VL+ L       +D+I+ DPPYN   +           + + +  +    
Sbjct: 160 NVFITGDNLEVLKILQESYLGKIDMIYIDPPYNTGKDFVYSDKFQKTDEELKEDMELLDE 219

Query: 78  ------------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
                                +       L   R +LK +G +++    +    +  +  
Sbjct: 220 EGRQVVGLTKNEKTSARYHSDWLNMMYPRLRLARNLLKDSGVIFISIDDNEQANLKAICD 279

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK--AKGYTFNYDALKAANED 177
            +           ++      +      +HE  +  S      AK ++ N  ++   N +
Sbjct: 280 EIFGEENFVASITRNTNSSKNQSLYISVSHEYCLVYSKDEIELAKKHSENKWSVDKNNIN 339

Query: 178 VQMRSD 183
              +  
Sbjct: 340 EYKKRV 345



 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 69/205 (33%), Gaps = 25/205 (12%)

Query: 103 WVIGSYHNIFRIGTM--LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
           W       ++R G +  ++N N   L + +  + +P+P   G R++N     +       
Sbjct: 378 WYF-DERGLYRKGDLGGVKNGNMTPLFNPLTCQEDPVP-PGGYRYKNEKLQELVNDNRIH 435

Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
                      +  NE+ + R   ++      +    K+        K  + ++RIL   
Sbjct: 436 FHTDGSLPTIKRYLNENSKQRPKSIMSDDQRPDYALLKNMGIEFDNPKQMSFMTRILSIF 495

Query: 221 TKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYID--------------I 260
                I  D F GSGT+     +L       R FI   + ++  D              I
Sbjct: 496 DSEA-IFFDFFAGSGTTAHAVMQLNAEDGGNRKFILCTLDEEVADKSAAKEAGYETIDQI 554

Query: 261 ATKRIASVQPLGNIELTVLTGKRTE 285
           + +RI         E   L GK+  
Sbjct: 555 SRERIRRAAIKIQEEHPELVGKQDF 579


>gi|300115415|ref|YP_003761990.1| adenine-specific DNA-methyltransferase [Nitrosococcus watsonii
           C-113]
 gi|299541352|gb|ADJ29669.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nitrosococcus watsonii C-113]
          Length = 646

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 63/183 (34%), Gaps = 19/183 (10%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLN-------GQLYRPDHSLVDAVT 69
           K+  I+G+++ VL+ L    A  V +I+ DPPYN            +           V 
Sbjct: 93  KNLFIEGDNLEVLKLLQKSYANKVKMIYIDPPYNTGKEFIYPDKFQENLDTYLKYTGQVD 152

Query: 70  DSWDKFSSFEA--------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
           D   K SS           +       L   R +L  +G +++    + I  +  +  ++
Sbjct: 153 DEGMKLSSNSESTGRKHTNWLNMMLPRLKLARNLLTHDGVIFISIDDNEIANLKLLCNDI 212

Query: 122 -NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
                    V    NP    + +   + HE L+  + S   KG      +     +D   
Sbjct: 213 FGEECFAGKVIVLCNPKGRSQDKYLASCHEYLLIYTKSVLDKGQLNAPKSKDEIAKDYPF 272

Query: 181 RSD 183
           + +
Sbjct: 273 QDE 275



 Score = 38.8 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 6/58 (10%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV--AKKLR----RSFIGIEM 253
           KL  + K   ++   +        I+LD F GSG+S     A+  +    R FI +++
Sbjct: 403 KLFQSPKSLDVIGDAIAICQDKDMIVLDFFSGSGSSAHAMMAENSKDNGSRRFISVQL 460


>gi|295426489|ref|ZP_06819139.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus amylolyticus DSM
           11664]
 gi|295063857|gb|EFG54815.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus amylolyticus DSM
           11664]
          Length = 308

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 16/116 (13%), Positives = 43/116 (37%), Gaps = 14/116 (12%)

Query: 20  KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           +  ++ G++    S  + L    V+L+  D PYN+   G+  +  +   D          
Sbjct: 203 RHALLCGDATKKESYQKLLDDHQVNLVLTDLPYNVDYQGKAGKIKNDHQDD--------- 253

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
             + +  F  A        +  + +++++ +           Q+  F++    +W+
Sbjct: 254 --DKFYQFLLAAFQNMNTAMANDASIYILHADTEELNFWRAFQDAGFYLSGCCIWK 307


>gi|157158703|ref|YP_001465832.1| N4/N6-methyltransferase family protein [Escherichia coli E24377A]
 gi|157080733|gb|ABV20441.1| N4/N6-methyltransferase family protein [Escherichia coli E24377A]
          Length = 1040

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 74/198 (37%), Gaps = 32/198 (16%)

Query: 14  NSIFEWKDKI----IKGNSISVLEKLPA--KSV-DLIFADPPYNLQLNGQLYRPDHSLVD 66
           NSI +  D +    I G++   L  L     SV D +  DPPYN   +G LY+       
Sbjct: 456 NSINDIDDNVDGVFINGDNYQALNLLKKKYNSVIDCVHIDPPYNTDTSGFLYKNSFK--- 512

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                        ++ +   + LL  + +L  NG  +     +   R+  + + L     
Sbjct: 513 -----------HSSWLSMMDSRLLFVKNLLSENGVFFCHIDENEYERLYLINKQLGLIDA 561

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
             I+W K NPM    G   Q+ + T             T N  ++   NE+V    ++  
Sbjct: 562 GTIIWDKRNPMNGGSGIAIQHEYTTCF-----------TKNMISINKKNENVLEILEYAK 610

Query: 187 PICSGSERLRNKDGEKLH 204
            I +    + ++  +K +
Sbjct: 611 LIKNKYPVINSEAKKKFY 628



 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 212 LLSRILVSST-KPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYIDIATKR 264
           L + ++ S++    +IILD F GSGTSG    +L       R +I +E  +   ++   R
Sbjct: 759 LYNYLIGSASHNKNEIILDFFAGSGTSGHSVIELNRKDAGSRKYILVEQGEYAQNVTLSR 818

Query: 265 IASV 268
           +  V
Sbjct: 819 LRKV 822


>gi|323141495|ref|ZP_08076383.1| DNA (cytosine-5-)-methyltransferase [Phascolarctobacterium sp. YIT
           12067]
 gi|322414011|gb|EFY04842.1| DNA (cytosine-5-)-methyltransferase [Phascolarctobacterium sp. YIT
           12067]
          Length = 670

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/109 (33%), Positives = 48/109 (44%), Gaps = 9/109 (8%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK-LHPTQKPEALLSRILVSSTKPGDI 226
           Y+          + +D L     GS  L +  GEK + P  KP  L+  I+   TK  DI
Sbjct: 370 YNFKTGGVNITTIWTDKLYYTNRGSNELTSALGEKGVFPYPKPVKLIEDIISRVTKENDI 429

Query: 227 ILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYIDIAT-KRIASV 268
           ILD F GS T+      +       R FI IEM  DY D  T +R+  V
Sbjct: 430 ILDSFAGSATTAHAVLNMNKADGGNRKFICIEM-MDYADTITAERVKRV 477



 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 75/206 (36%), Gaps = 20/206 (9%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQL 57
           + ++ S             ++ II G+++  L+ L  K    +  I+ DPPYN      +
Sbjct: 45  LERQYSFDEAGKHEEDNGSENMIIHGDNLLALKSLLPKYEGKIKCIYIDPPYNTGEENWV 104

Query: 58  YRPD-------HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
           Y  +         + + V    +  +  + +       L    ++L  +G + V   +H 
Sbjct: 105 YNDNVNDEQIKKWIGEVVGKEGEDLTRHDKWLCMMYPRLKLLAKLLSVDGVMAVSIGFHE 164

Query: 111 IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK--------AK 162
           +  +  +L+ +       +V  +++      G  +    E +++ +P+            
Sbjct: 165 LNPLVLLLKEIFSIRQVTVVTVQTSGGKPKDGFNYVQ--EYIVFVAPNGFQPNPSLEAMN 222

Query: 163 GYTFNYDALKAANEDVQMRSDWLIPI 188
            Y   Y A+  A  +   R + + PI
Sbjct: 223 EYASPYHAMTLAGFNQVTRPNQVYPI 248


>gi|134098872|ref|YP_001104533.1| hypothetical protein SACE_2307 [Saccharopolyspora erythraea NRRL
           2338]
 gi|291005770|ref|ZP_06563743.1| hypothetical protein SeryN2_14718 [Saccharopolyspora erythraea NRRL
           2338]
 gi|133911495|emb|CAM01608.1| hypothetical protein SACE_2307 [Saccharopolyspora erythraea NRRL
           2338]
          Length = 323

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 35/79 (44%)

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           + R       HP +   A+    +   T+PGD++LDP  G GT+   A    R  +G+E 
Sbjct: 32  KHRYTPDSTAHPAKMLPAIARHAITHYTQPGDLVLDPMCGIGTTLVEAIHTGRHALGVEY 91

Query: 254 KQDYIDIATKRIASVQPLG 272
           +  +  IA   IA     G
Sbjct: 92  EPHWAHIARDNIALAHAAG 110



 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 12/112 (10%)

Query: 18  EWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQ--------LYRPDHSLVD 66
           + + ++I+G++  +   LP+       L    PPY    +GQ        +++  H   +
Sbjct: 112 DHRGEVIQGDARQLSSLLPSTYLGQAALAVTSPPYGPSTHGQVVTQPDRIVHKFHHRYGN 171

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNIFRIGTM 117
            +          +         L   R  L+P G L   I  +     +  +
Sbjct: 172 TLDRGNLANIGHQRLLTGFTRILTGLRHYLRPGGHLAITIRPWREHSELIDL 223


>gi|294668826|ref|ZP_06733919.1| putative type III restriction-modification system EcoPI,
           modification subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309343|gb|EFE50586.1| putative type III restriction-modification system EcoPI,
           modification subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 582

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 55/150 (36%), Gaps = 13/150 (8%)

Query: 21  DKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLY-------RPDHSLVDAVTD 70
           + +I G+++  L+ L  +    ++ I+ DPPYN      +Y       R    L + V  
Sbjct: 43  NILIHGDNLLALKSLLPEFGGKINCIYIDPPYNTGEEKWVYNDNVNDPRIKKWLGEVVGK 102

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDI 129
             + FS  + +       L   +++L  +G +++    +    +  +   +     +   
Sbjct: 103 EGEDFSRHDKWLCMMYPRLKLLKQLLAEDGVIFISIDDNEQACLKLICDEIFGGGFIGCF 162

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
           V  K N   +      Q  HE ++      
Sbjct: 163 VHNKLNSKNDRTN--IQKNHEYILVYYKRN 190



 Score = 56.1 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 8/82 (9%)

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RR 246
             +  + G   +P  K  +++  ++     P  +ILD F GSGT+      L       R
Sbjct: 366 NEIMGQRGVFKYP--KNVSMIEYLICLIDNPNALILDSFSGSGTTAHAVLSLNQKDGGNR 423

Query: 247 SFIGIEMKQDYIDIATKRIASV 268
            FIG+EM     +I  +RI  V
Sbjct: 424 RFIGVEMMDYAENITAERIRRV 445


>gi|207109898|ref|ZP_03244060.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
          pylori HPKX_438_CA4C1]
          Length = 53

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 31/50 (62%)

Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV 65
          + E  + II+G+ +  L+  P +SVD IFADPPY +Q  G+L R + +  
Sbjct: 4  LKENLNTIIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKF 53


>gi|167630946|ref|YP_001681445.1| DNA methylase, putative [Heliobacterium modesticaldum Ice1]
 gi|167593686|gb|ABZ85434.1| DNA methylase, putative [Heliobacterium modesticaldum Ice1]
          Length = 770

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 62/153 (40%), Gaps = 12/153 (7%)

Query: 5   NSLAINENQNSIFEWKDKIIKGN---SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
             +A  EN      W   +I+ +   ++ +LE L  K VD I+ DPPYN          D
Sbjct: 112 QPIASVENAPDSSLW-HTLIEADNYHALQLLEYLYPKKVDCIYIDPPYNTGAR------D 164

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
               +   DS D +   + + +  +  L   +R+L  +G L V    +    +  +L  +
Sbjct: 165 WKYNNDYVDSSDNWRHSK-WLSMMQKRLRIAKRILADDGVLIVTIDDNEHAHLTMLLNEI 223

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
                   V  + NP    +G +F   HET I+
Sbjct: 224 FPDRKLFSVPIQHNPRGT-QGEKFAVTHETAIF 255



 Score = 41.9 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 72/221 (32%), Gaps = 19/221 (8%)

Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
           +   G    +  +    +  N  I + I     +     R  R+   +E  +        
Sbjct: 305 IVKFGD---VLPLDEHPEGANVKIGDYIYVYPIDSQGIERKWRYSKKNEDEVLPFLRAVN 361

Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
              T      + +     + +D L        ++ N   +      K    +   L    
Sbjct: 362 NSGTIEIHIQRESENTKTIWTDPLYNAEEYGTKMINSMLDTTFSYPKSLYAVHDALWHVV 421

Query: 222 --KPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQ--DYIDIATKRIASVQPL 271
             KP  +I+D F GSGT+      L       R  I +   +  D    A ++    QP 
Sbjct: 422 SGKPNALIVDFFAGSGTTLHAVNLLNIEDNGNRRCILVTNNEVSDAESKALQK-KGYQP- 479

Query: 272 GNIELTVLTGKRTE--PRVAFNLLVER--GLIQPGQILTNA 308
           G++E       R+   PR  +++L  R  G +  G+  TN 
Sbjct: 480 GDLEWEKHGICRSVTWPRTKYSILGRRDDGTVLTGEYFTNQ 520


>gi|17225510|gb|AAL37443.1|AF328912_2 type II DNA modification enzyme [Helicobacter pylori]
          Length = 315

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 50/136 (36%), Gaps = 7/136 (5%)

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
             M   +GR ++    TL         +    N    K    +   +    I        
Sbjct: 173 KGMLPPKGRHWRTDIATLERWDKEGLIEYSNNNNPRKKIYALEQVGKRVQDI-------W 225

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                    +PT+K   LL  I+ +S+    I+LD F GSGT+   A  L+R FIGI+  
Sbjct: 226 EFKDPQYPSYPTEKNAQLLDLIIKTSSNKDSIVLDCFCGSGTTLKSAFLLQRKFIGIDNS 285

Query: 255 QDYIDIATKRIASVQP 270
              I     ++ ++  
Sbjct: 286 GLAIKACKNKLETITK 301



 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 64/175 (36%), Gaps = 16/175 (9%)

Query: 42  LIFADPPYNLQL-----NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
           +I+ DPP+         NG+     +S    +  S DK    + +  F +  L+  + +L
Sbjct: 1   MIYIDPPFATNNHFTITNGRATTISNSKNGDIAYS-DKVVGMD-FIEFLKQRLVLLKELL 58

Query: 97  KPNGTLWVIGSYHNIFRIGTMLQNLNFW--ILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
              G+++V   Y     +  ML  +       N+I   K NP  NF+   + N  + +++
Sbjct: 59  SEQGSIYVHTDYKIGHYVKVMLDEIFGIQNFRNEITRIKCNP-KNFKRIGYGNIKDMILF 117

Query: 155 ASP------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
            S       +     YT      +    D   R    +PI +  E    +  +  
Sbjct: 118 YSKGKNPIFNEPKIPYTPQDLEKRFPKIDKDKRRYTTVPIHAPGEVESGECSKAF 172


>gi|323970431|gb|EGB65693.1| DNA methylase [Escherichia coli TA007]
          Length = 551

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 72/177 (40%), Gaps = 24/177 (13%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKL---PAKSVDLIFADPPYNLQLNGQLY 58
             K+     EN+NS    ++ +IKG+++ VL+ +    ++ V +I+ DPPYN   +G  Y
Sbjct: 88  EDKDHNQREENKNS----QNLLIKGDNLEVLKHMVNAYSEKVKMIYIDPPYNTGKDGFAY 143

Query: 59  RPDHS-----LVDAVTDSWDK-----------FSSFEAYDAFTRAWLLACRRVLKPNGTL 102
             D       L D      D+            SS  A+  F    L   R +L+ +G +
Sbjct: 144 NDDRKFTPEQLSDLAGIDLDEAKRILEFTTNGSSSHSAWLTFIYPRLYIARELLREDGVI 203

Query: 103 WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
           ++    + + ++ T+   +     N I     N       +   N HE ++  + + 
Sbjct: 204 FISIDENELNQLKTICDEIFGE-ANFIENIVWNKRIPKNDKGIGNIHEYILAYAKNN 259



 Score = 43.1 bits (100), Expect = 0.075,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 7/73 (9%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSS-TKPGDIILDPFFGSGTSGAVAKKLR---- 245
           G E      G+      KP +L+  +  S  T+  DI LD F GSGT+     +L     
Sbjct: 426 GVEVENLFGGKGYFSYPKPTSLIKTLFGSVKTEDKDIYLDFFAGSGTTAHGILELNIEDG 485

Query: 246 --RSFIGIEMKQD 256
             R+FI +++ ++
Sbjct: 486 RKRNFICVQLDEE 498


>gi|237814033|ref|YP_002898484.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei
           MSHR346]
 gi|237505089|gb|ACQ97407.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei
           MSHR346]
          Length = 138

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 55/151 (36%), Gaps = 24/151 (15%)

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
           +Q     +    VW K+      R   F    E ++WAS         +           
Sbjct: 1   MQAAGLILRGVAVWDKTLGRMRLRRGGFAQQAEFVVWASRGAMRGCDVYLPGVFPC---- 56

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                   +P+             K H T+KP   ++R +V     G ++ D F GSGT 
Sbjct: 57  -------RLPLP------------KQHVTEKPLD-IAREVVRLMPAGVVVCDLFAGSGTF 96

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            A A++    ++G E  Q Y  I++ R+ + 
Sbjct: 97  LAAAREAGLHWVGSESNQAYHAISSARLDAT 127


>gi|298735507|ref|YP_003728028.1| adenine-specific DNA-methyltransferase [Helicobacter pylori B8]
 gi|298354692|emb|CBI65564.1| site-specific DNA-methyltransferase (adenine-specific)
           [Helicobacter pylori B8]
          Length = 486

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 60/156 (38%), Gaps = 17/156 (10%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHS--------LVDAV 68
           K  +IKG+++  L+ L    ++ + +I+ DPPYN +    +Y  D S         +D  
Sbjct: 89  KHILIKGDNLDALKILRQSYSEKIKMIYIDPPYNTKNENFIYGDDFSQSNEEVLKQLDYS 148

Query: 69  TDSWDKFSSF------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
            +  D   +         + +F    LL  + +LK +G +++    +   ++  +   + 
Sbjct: 149 KEKLDYIKNLFGSKCHSGWLSFMYPRLLLAKDLLKQDGVIFISIDDNEAAQLKLLCDEIF 208

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
                               + FQN +E ++  +  
Sbjct: 209 GERNFLSSLTWLKGNAQNDAQYFQNNYENILVYAKH 244



 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 30/56 (53%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +G++ +     +K+    KP  L+SR++  ST   DIILD F GSGT+     +  
Sbjct: 416 NGTKEVNALFNQKIFNNPKPTKLISRLIELSTNESDIILDFFAGSGTTAHAVLESN 471


>gi|297530406|ref|YP_003671681.1| DNA methylase N-4/N-6 domain protein [Geobacillus sp. C56-T3]
 gi|297253658|gb|ADI27104.1| DNA methylase N-4/N-6 domain protein [Geobacillus sp. C56-T3]
          Length = 477

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 60/191 (31%), Gaps = 5/191 (2%)

Query: 24  IKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS-SFE 79
           I+G+++ VL+ L    A ++ +I+ DPPYN                 V+    + +    
Sbjct: 89  IEGDNLEVLKLLRTSHAGAIQMIYIDPPYNTGKVLTYKDNWRKGKAVVSSGIQEEACGHA 148

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP-MP 138
            +       L   R +L   G +++         +  M   +         +       P
Sbjct: 149 GWLNMMYPRLWVARTLLAETGAMFISIDDTEQANLKKMCDEIFGERNFIATFIWQRAFSP 208

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
               +     H+ ++  + +     +       +A        +D   P  SG   +   
Sbjct: 209 VNMNKFASRNHDFILCYAKNIDRLAWYGLPRHPEADGRYANPDNDPRGPWTSGDLSVGPP 268

Query: 199 DGEKLHPTQKP 209
             EK++    P
Sbjct: 269 IPEKIYDIVTP 279



 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 20/82 (24%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV-----AKKLRRSFIGI--------EM 253
            KP  L+ R++  +T+  D+ILD F GS T+        A+   R    +        E 
Sbjct: 365 PKPVKLIQRMVALTTRDDDLILDFFSGSATTAHAVMQQNAEDGGRRSFLMVQLPEPLAET 424

Query: 254 KQDY-------IDIATKRIASV 268
              Y        DI  +RI   
Sbjct: 425 SAAYRAGFRTICDIGRERIRRA 446


>gi|51892572|ref|YP_075263.1| hypothetical protein STH1434 [Symbiobacterium thermophilum IAM
           14863]
 gi|51856261|dbj|BAD40419.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 297

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 32/63 (50%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
              H  QKP  L + ++ + TK G+ +LDPF G G +   A    R  +G+E+   +I I
Sbjct: 59  RSRHGGQKPPELCADLIRTFTKSGERVLDPFMGVGGTLIGATISGRRAVGVEINPRWIAI 118

Query: 261 ATK 263
             +
Sbjct: 119 YRE 121



 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 56/148 (37%), Gaps = 25/148 (16%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPY-NLQL----NGQLYRPDHSLV------------D 66
           + G+S +VL     +S DL+  D PY N+       G+  R D   V            D
Sbjct: 134 VCGDSRTVLAGFEPESFDLVLTDVPYWNMDRRRRSKGKFKRADGPAVEPRRSKLSPFAPD 193

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN-------GTLWVIGSYHN-IFRIGTML 118
                       E +    RA   A  R+L+P        G ++  G YH     +  +L
Sbjct: 194 ETETDVTGMQGKEEWLDTMRAVFAAALRLLRPRRYMAVFIGDMYHSGRYHMLSAELAGLL 253

Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
           ++L   +  +++W   +   +  G R++
Sbjct: 254 ESLGLVLKANLIWYDVSKKLHVYGYRYE 281


>gi|163785315|ref|ZP_02179963.1| DNA methylase N-4/N-6 domain protein [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159879418|gb|EDP73274.1| DNA methylase N-4/N-6 domain protein [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 386

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 6/73 (8%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
           ++    KP  L+ ++L  S+ P  +ILD F GSGT+     KL       R FI IEM  
Sbjct: 113 EVFDNPKPIELIEKVLRISSNPNSLILDFFAGSGTTAHAVMKLNNEDRGDRKFILIEMAD 172

Query: 256 DYIDIATKRIASV 268
            +  +   RI  V
Sbjct: 173 YFETVIIPRIKKV 185


>gi|294777969|ref|ZP_06743404.1| DNA (cytosine-5-)-methyltransferase [Bacteroides vulgatus PC510]
 gi|294448178|gb|EFG16743.1| DNA (cytosine-5-)-methyltransferase [Bacteroides vulgatus PC510]
          Length = 671

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 82/217 (37%), Gaps = 29/217 (13%)

Query: 21  DKIIKGNSISVLEKL---PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
             +I+G+++  L  L       +D+I+ DPPYN          D    D   D  + F  
Sbjct: 74  HILIEGDNLEALTALTYTHEGKIDVIYIDPPYN------RGEKDFKYNDDYVDKENPFRH 127

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN---LNFWILNDIVWRKS 134
              + +F +  L   + +LK +G + V    H    +  +L+         L  I+W K 
Sbjct: 128 -SLWLSFMKKRLSIAKSLLKNDGVMIVHIDEHEFDALNILLETEIFTRDNCLGQIIWNKL 186

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           NP  +         HE ++    + +A   + N+   +  N          + I + ++ 
Sbjct: 187 NPKGDANA--VAIQHEYILLYCKNKEAFNSSPNHLMREKPN---------ALKIINKAKS 235

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
           L +K G+ + P       +  ++       D++ D +
Sbjct: 236 LFSKIGKTIIP-----EDVKTVISPFEYSEDVLKDFY 267



 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 8/66 (12%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYI-- 258
            K  A+   +L +     +IILD F GSGT+     +L       R  I +   ++ I  
Sbjct: 421 PKTLAVAKYLLKNVLPNSEIILDFFAGSGTTLHATMQLNAEDSGHRKCILVTNNENNICE 480

Query: 259 DIATKR 264
           ++  KR
Sbjct: 481 EVTYKR 486


>gi|37518398|emb|CAD58550.1| hypothetical protein [Yersinia enterocolitica]
          Length = 647

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 56/151 (37%), Gaps = 7/151 (4%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPA--KSVDLIFADPPYNLQ----LNGQLYRPDHSLVDA 67
             + + +++I  G ++S +  L      +DL+  DPPYN       N +  +  +     
Sbjct: 62  EELAQAENEIWDGENLSAMVTLYKYRGQIDLVLTDPPYNTGEDFRYNDKWDKDPNDPDLG 121

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWIL 126
                D  S    +  F    +   R +LKP G + +   +  +FR+G ++  +      
Sbjct: 122 DVVPKDDGSKHSKWLRFMTPRIWMMREMLKPGGVMAICIDHRELFRLGMLMDEIFGEDNR 181

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
             I+  + +       +    A E ++    
Sbjct: 182 LAIINWQKSAAARPDNKHVSTATEYVLVYGK 212



 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 18/104 (17%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGI-----E 252
             T KP  L+++I+    +P  I+LDPF GSGT+G    +L       R FI I     E
Sbjct: 413 FSTVKPLKLMTKIIQLWCRPDGIVLDPFAGSGTTGHAVLELNKEADTNRRFILIEQGNTE 472

Query: 253 MKQDYID-IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
               Y   +  +R+  V      +       + EP V     +E
Sbjct: 473 KGDHYAKTLTAERVKRVISGDWSKT------KKEPLVGGFRFIE 510


>gi|308064279|gb|ADO06166.1| type III R-M system modification enzyme [Helicobacter pylori
           Sat464]
          Length = 656

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 69/186 (37%), Gaps = 20/186 (10%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSL--------VDAV 68
           K  +IKG+++  L+ L    ++ + +I+ DPPYN +    +Y  D S         +D  
Sbjct: 89  KHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNENFIYGDDFSQSNEEILKTLDYS 148

Query: 69  TDSWDKFSSF------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL- 121
            +  D   +         + +F    LL  + +LK +G +++    +   ++  +   + 
Sbjct: 149 KEKLDYIKNLFGSKCHSGWLSFMYPRLLLAKDLLKQDGVIFISIDDNQAAQLKLLCDEIF 208

Query: 122 --NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
               ++   I   K+ P  N    +  +     I+       K         +   +   
Sbjct: 209 GEGNFVAQFIWHSKNKPSGNTTEDKTIDTRTEYIFCYQRYNFKANKHENTKEELEEKGYI 268

Query: 180 MRSDWL 185
           ++ ++ 
Sbjct: 269 LKDEYF 274



 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 28/47 (59%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +GEK+    KP  L+SR++  ST  GDIILD F GSGT+     +  
Sbjct: 401 NGEKIFSYPKPTKLISRLIELSTNEGDIILDFFAGSGTTAHAVLESN 447


>gi|293476569|ref|ZP_06664977.1| N4/N6-methyltransferase [Escherichia coli B088]
 gi|291321022|gb|EFE60464.1| N4/N6-methyltransferase [Escherichia coli B088]
          Length = 644

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 74/198 (37%), Gaps = 32/198 (16%)

Query: 14  NSIFEWKDKI----IKGNSISVLEKLPA--KSV-DLIFADPPYNLQLNGQLYRPDHSLVD 66
           NSI +  D +    I G++   L  L     SV D +  DPPYN   +G LY+       
Sbjct: 60  NSINDIDDNVDGVFINGDNYQALNLLKKKYNSVIDCVHIDPPYNTDTSGFLYKNSFK--- 116

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                        ++ +   + LL  + +L  NG  +     +   R+  + + L     
Sbjct: 117 -----------HSSWLSMMDSRLLFVKNLLSENGVFFCHIDENEYERLYLINKQLGLIDA 165

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
             I+W K NPM    G   Q+ + T             T N  ++   NE+V    ++  
Sbjct: 166 GTIIWDKRNPMNGGSGIAIQHEYTTCF-----------TKNMISINKKNENVLEILEYAK 214

Query: 187 PICSGSERLRNKDGEKLH 204
            I +    + ++  +K +
Sbjct: 215 LIKNKYPVINSEAKKKFY 232



 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 212 LLSRILVSST-KPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYIDIATKR 264
           L + ++ S++    +IILD F GSGTSG    +L       R +I +E  +   ++   R
Sbjct: 363 LYNYLIGSASHNKNEIILDFFAGSGTSGHSVIELNRKDAGSRKYILVEQGEYAQNVTLSR 422

Query: 265 IASV 268
           +  V
Sbjct: 423 LRKV 426


>gi|83589501|ref|YP_429510.1| DNA methylase N-4/N-6 [Moorella thermoacetica ATCC 39073]
 gi|83572415|gb|ABC18967.1| DNA methylase N-4/N-6 [Moorella thermoacetica ATCC 39073]
          Length = 852

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 61/169 (36%), Gaps = 19/169 (11%)

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP--TQKPEALL 213
            P+P    +   Y        D   R   +  +  G     N      H   T+ P   +
Sbjct: 63  CPNPYLGEFIRRYGKPYDEATDTYQRPPLVADVTEGK----NDPVYNAHSYHTKVPHKAI 118

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
            + +   T+PGDI+ D F GSG +G  A+ L R  I  ++      IA           N
Sbjct: 119 MKYIEHYTEPGDIVFDGFCGSGMTGVAAQLLGRRAILCDLSPAATFIAYN--------YN 170

Query: 274 IELTVLTGKRTEPRVAFNLLVERGLIQPGQILTN---AQGNISATVCAD 319
             + V   +R   R+   +  E G +   + L       G I+ TV +D
Sbjct: 171 TPVDVAAFEREAKRILAEVEKECGWMY--ETLHTDGRTNGRINYTVWSD 217



 Score = 39.6 bits (91), Expect = 0.75,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 50/182 (27%), Gaps = 13/182 (7%)

Query: 34  KLPAKSVDLIFADPPYNLQL---------NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
            +    +D IF DPP+   L            L    ++  +A+ +   +      Y   
Sbjct: 456 SIYNNCIDYIFTDPPFGSNLMYSELNFLWEAWLRVFTNNRPEAIINET-QGKGLPEYKEL 514

Query: 85  TRAWLLACRRVLKPNGTL-WVIGSYHN--IFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
             A      R+LKPN  +  V  +        I   +    F I    V  +     N  
Sbjct: 515 MTACFKEMYRLLKPNRWMTVVFHNSRAAVWNAIQEAITRAGFVIAQVTVMDRKQGSFNQV 574

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
                   + +I A    K     F   A      D        +P+     R       
Sbjct: 575 TAAGAVEKDLIINAYKPKKQMEENFLRRAGAGLERDFVADLLEHLPVVPNVGRTEKMLYS 634

Query: 202 KL 203
           KL
Sbjct: 635 KL 636


>gi|319776841|ref|YP_004136492.1| type ii r/m system DNA methylase [Mycoplasma fermentans M64]
 gi|319776968|ref|YP_004136619.1| type ii r/m system DNA methylase [Mycoplasma fermentans M64]
 gi|319777200|ref|YP_004136851.1| type ii r/m system DNA methylase [Mycoplasma fermentans M64]
 gi|318037916|gb|ADV34115.1| Type II R/M system DNA methylase [Mycoplasma fermentans M64]
 gi|318038043|gb|ADV34242.1| Type II R/M system DNA methylase [Mycoplasma fermentans M64]
 gi|318038275|gb|ADV34474.1| Type II R/M system DNA methylase [Mycoplasma fermentans M64]
          Length = 396

 Score = 66.2 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 36/81 (44%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +    P  L    +   TK  D ++D F G GT+   ++KL R F+G ++      ++  
Sbjct: 37  YLAMFPVELPLYFIKKYTKENDTVMDNFSGRGTTAYASRKLNRKFVGNDLNPYAFVLSKS 96

Query: 264 RIASVQPLGNIELTVLTGKRT 284
           ++ ++  +  IE  +   K  
Sbjct: 97  KLINISNIEKIEKRIKELKNK 117



 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 57/135 (42%), Gaps = 22/135 (16%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY-- 58
           +  K  + +++N  SIF++ + +   NS++ L+     SVDL+   PPY   ++      
Sbjct: 228 LKIKWEIFLSKNYESIFKYWNSL---NSLNFLK---NNSVDLVITSPPYLSLVDYTKSNW 281

Query: 59  ---------RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW-VIGSY 108
                    + +      ++DS D     + Y  F + +L+     LKP   +  VIG  
Sbjct: 282 LRLWLLGFEKNNLKKEIKLSDSLD----LKEYTNFIKKYLINISSKLKPKAKVCLVIGDV 337

Query: 109 HNIFRIGTMLQNLNF 123
           ++   I  + + +  
Sbjct: 338 YDFELIENIWKEIKN 352


>gi|238809749|dbj|BAH69539.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 402

 Score = 66.2 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 36/81 (44%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +    P  L    +   TK  D ++D F G GT+   ++KL R F+G ++      ++  
Sbjct: 43  YLAMFPVELPLYFIKKYTKENDTVMDNFSGRGTTAYASRKLNRKFVGNDLNPYAFVLSKS 102

Query: 264 RIASVQPLGNIELTVLTGKRT 284
           ++ ++  +  IE  +   K  
Sbjct: 103 KLINISNIEKIEKRIKELKNK 123



 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 57/135 (42%), Gaps = 22/135 (16%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY-- 58
           +  K  + +++N  SIF++ + +   NS++ L+     SVDL+   PPY   ++      
Sbjct: 234 LKIKWEIFLSKNYESIFKYWNSL---NSLNFLK---NNSVDLVITSPPYLSLVDYTKSNW 287

Query: 59  ---------RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW-VIGSY 108
                    + +      ++DS D     + Y  F + +L+     LKP   +  VIG  
Sbjct: 288 LRLWLLGFEKNNLKKEIKLSDSLD----LKEYTNFIKKYLINISSKLKPKAKVCLVIGDV 343

Query: 109 HNIFRIGTMLQNLNF 123
           ++   I  + + +  
Sbjct: 344 YDFELIENIWKEIKN 358


>gi|308190040|ref|YP_003922971.1| hypothetical protein MFE_04910 [Mycoplasma fermentans JER]
 gi|307624782|gb|ADN69087.1| hypothetical protein MFE_04910 [Mycoplasma fermentans JER]
          Length = 223

 Score = 66.2 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 36/81 (44%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +    P  L    +   TK  D ++D F G GT+   ++KL R F+G ++      ++  
Sbjct: 37  YLAMFPVELPLYFIKKYTKENDTVMDNFSGRGTTAYASRKLNRKFVGNDLNPYAFVLSKS 96

Query: 264 RIASVQPLGNIELTVLTGKRT 284
           ++ ++  +  IE  +   K  
Sbjct: 97  KLINISNIEKIEKRIKELKNK 117


>gi|2128725|pir||H64450 hypothetical protein MJ1209 - Methanococcus jannaschii
          Length = 200

 Score = 66.2 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 68/190 (35%), Gaps = 26/190 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            +I  + ++V   LP +S+DLI   PPYN+ ++   +              D    +E Y
Sbjct: 22  TLINDDFLNV--DLPNESIDLIVTSPPYNVGIDYNQH--------------DDTIPYEEY 65

Query: 82  DAFTRAWLLACRRVLKPNGTLWVI--------GSYHNIFRIGTMLQNLNFWILNDIVWRK 133
             +T+ WL     +LK +G L +         G       I  +  ++ F     I+W +
Sbjct: 66  LDWTKQWLKKALTLLKKDGRLCLNIPLDKNKGGIKPVYADIVKIALDVGFKYQTTIIWNE 125

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
            N         F +A    + A        Y  ++  L     D+    +  I   +G  
Sbjct: 126 QNISRRTAWGSFMSASAPYVIAPVETIVVLYKESWKKLSKGESDIT--KEEFIEWTNGLW 183

Query: 194 RLRNKDGEKL 203
               +  ++L
Sbjct: 184 TFPGESKKEL 193


>gi|304436350|ref|ZP_07396326.1| methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370619|gb|EFM24268.1| methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 657

 Score = 66.2 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           W     +G  R   + G KL   +KPE L+ +I   ST PGDI+LD   GSGT+ AVA K
Sbjct: 452 WSHISWAGIAR---EGGVKLKNGKKPERLIKQIFDISTDPGDIVLDYHLGSGTTCAVAHK 508

Query: 244 LRRSFIGIE 252
           +   +IG E
Sbjct: 509 MGLQYIGCE 517



 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 47/132 (35%), Gaps = 17/132 (12%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99
           V  I+ DPPYN   +   Y              DKF +  ++  F +  L   R++L+ +
Sbjct: 196 VKCIYIDPPYNTGEDEFSY-------------NDKF-NHSSWLTFMKNRLDFARKMLRED 241

Query: 100 GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP---NFRGRRFQNAHETLIWAS 156
           G ++V   +H +     ++  +        +       P           +  E +++ +
Sbjct: 242 GAIFVHVDHHELGYTNVLMDEIFDVENKVQIIAVKTASPAGFKTVNPGPIDVTEYILFYT 301

Query: 157 PSPKAKGYTFNY 168
            + +   +   Y
Sbjct: 302 KNKQMFRFKKGY 313


>gi|148266400|ref|YP_001233106.1| site-specific DNA-methyltransferase (adenine-specific) [Geobacter
           uraniireducens Rf4]
 gi|146399900|gb|ABQ28533.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacter
           uraniireducens Rf4]
          Length = 531

 Score = 66.2 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 67/400 (16%), Positives = 118/400 (29%), Gaps = 109/400 (27%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPP---------YNLQLNG-----QLYRPDHS 63
           + +++G+++  L+ L       V  I+ DPP         YN  +N       L R    
Sbjct: 39  NLLVQGDNLLALKALLPYYAGQVKCIYIDPPYNTGNEGWVYNDNVNSPEMREWLGRAVGK 98

Query: 64  LVDAVT--DSW----------------DKFSSFEAYDA----FTRAWLLACRRV------ 95
             + ++  D W                D  + F + D     F R  +            
Sbjct: 99  EAEDLSRHDKWLCMMYPRLALLREFLRDDGAIFISIDDNEVHFLRMMMDEIFGANNFLCS 158

Query: 96  ------------LKPNGTL------WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
                        K  G L      +   S      +         +   D   R     
Sbjct: 159 FAWEKRYSPPPDTKDIGYLHETLLAYRKSSKFQRNLLPLTFDQTGRYKNPDNDPRGPWQS 218

Query: 138 PNFRGRRFQNAHETLIWASPSPK-------AKGYTFNYDALKAANEDVQMRSDWLIPICS 190
            ++  R   +    L +   +          +   +          + + R  W     S
Sbjct: 219 MDYSCRYTASERPNLFYPIINRNTEEEIWPKETRVWAMSKEVHEKNEKENRIWWGKDGKS 278

Query: 191 GSERLRN---------------KDGEKLH----------------PTQKPEALLSRILVS 219
            + RL+N               K     H                 T KP  L+  ++  
Sbjct: 279 STPRLKNFLSEIQQGMIPVSLLKHEVAGHTDEAAKELRALVPEVKFTPKPTRLIRHLMQI 338

Query: 220 STKPGDIILDPFFGSGTSGAV--AKKL----RRSFIGIEMKQDYI-DIATKRIASVQPLG 272
           S+    +ILD F GSGT+G    A+       R FI +EM +     I  +R++ V   G
Sbjct: 339 SSDKDALILDSFAGSGTTGHAVLAQNASDGGNRRFILVEMDEHICRKITAQRLSRV-SQG 397

Query: 273 NIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNI 312
             ++  L G      ++  L  ERG I+     ++   ++
Sbjct: 398 YEKVPALGGGFRFCELSEPLFDERGNIRSSVRFSDLARHV 437


>gi|317010107|gb|ADU80687.1| adenine-specific DNA-methyltransferase [Helicobacter pylori India7]
          Length = 486

 Score = 66.2 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 60/156 (38%), Gaps = 17/156 (10%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSL--------VDAV 68
           K  +IKG+++  L+ L    ++ + +I+ DPPYN +    +Y  D S         +D  
Sbjct: 89  KHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNENFIYDDDFSQSNEEILKTLDYS 148

Query: 69  TDSWDKFSSF------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
            +  D   +         + +F    LL  + +LK +G +++    +   ++  +   + 
Sbjct: 149 KEKLDYIKNLFGSKCHSGWLSFMYPRLLLAKDLLKQDGVIFISIDDNEAAQLKLLCDEIF 208

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
                               + FQN +E ++  +  
Sbjct: 209 GEGNFLSSLTWLKGNAQNDAQYFQNNYENILAYAKH 244



 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 31/56 (55%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +G++ +     +K+    KP  L++R++  ST  GDIILD F GSGT+     +  
Sbjct: 416 NGTKEVNALFNQKIFNNPKPTKLINRLIELSTNEGDIILDFFAGSGTTAHAVLESN 471


>gi|325283867|ref|YP_004256408.1| DNA methylase N-4/N-6 domain-containing protein [Deinococcus
           proteolyticus MRP]
 gi|324315676|gb|ADY26791.1| DNA methylase N-4/N-6 domain protein [Deinococcus proteolyticus
           MRP]
          Length = 613

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 12/112 (10%)

Query: 18  EWKDKIIKGNSISVLEKLPA--KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD----- 70
           + ++ +I+G+++ V+  L      VDLI ADPPYN    G  +R +    D   D     
Sbjct: 35  KLENLLIEGDNLQVMASLYRYRGQVDLIIADPPYNT---GNDFRYNDRWNDDPNDPDPGQ 91

Query: 71  --SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
             + D  +    +  F    L   + +L+P G   V      +FR+G ++ +
Sbjct: 92  LVTSDDGARHTKWMRFMAPRLEMMKAMLRPGGVCAVCIDERELFRLGMLMDD 143



 Score = 63.5 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 12/82 (14%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIE 252
                  T KP  L+++I+        ++LDPF GSGT+G    K+       R FI IE
Sbjct: 380 GSRHGFETVKPLKLITKIIQLWCPSNGLVLDPFAGSGTTGHAVLKMNHDTGSSRKFILIE 439

Query: 253 M------KQDYIDIATKRIASV 268
                        +  +R+  V
Sbjct: 440 QSRPERGDPYARTLTAERLKRV 461


>gi|268324637|emb|CBH38225.1| putative N6 adenine-specific DNA methyltransferase [uncultured
           archaeon]
          Length = 689

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 37/57 (64%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           +N+ G      +KPE LL+R++   T+  +I+ D + GSGT+ AVA K+ R +IGIE
Sbjct: 485 QNEGGVSFPSGKKPELLLARLISMFTQQDEIVCDFYLGSGTTAAVAHKMGRQYIGIE 541



 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 19/131 (14%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       V +I+ DPPYN   +   Y              D F +
Sbjct: 207 NMIIKGNNLLALHTLKTQFRGKVKMIYIDPPYNTGSDSFGY-------------NDNF-N 252

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSN 135
             ++  F ++ L   + +L+ +G + +   +     +  ++  +      +N +  R S+
Sbjct: 253 HSSWLTFMKSRLEISKELLRKDGAIVIHCDFVEDNYLKVLMDEIFGRDNFVNSVAIRDSH 312

Query: 136 PMPNFRGRRFQ 146
           P       R +
Sbjct: 313 PSGLKLSARDK 323


>gi|167631025|ref|YP_001681524.1| DNA methylase [Heliobacterium modesticaldum Ice1]
 gi|167593765|gb|ABZ85513.1| DNA methylase [Heliobacterium modesticaldum Ice1]
          Length = 637

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 67/184 (36%), Gaps = 23/184 (12%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQLN---GQLYRPDHSLVDAVTDSWDKFSS 77
           I+G+++ VL+ L       V +I+ DPPYN   +      +  +     A+    D+   
Sbjct: 98  IEGDNLEVLKLLRNSYYNKVKMIYIDPPYNTGNDFIYKDNFAMNQRENSALEGEIDEMGE 157

Query: 78  ------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--F 123
                          + +     L   + +LK +G +++    +    +  +   +    
Sbjct: 158 RLIVNQKSNGRYHSNWLSMMYPRLKVAKDLLKEDGVIFISIDDNEHSNLKLLCDEVFGSN 217

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA--LKAANEDVQMR 181
             + DIVWR S+   N      ++ H  ++  + SP  K    N D+      N D   R
Sbjct: 218 SFIGDIVWRSSDNSNNNALTFSED-HNYILVYAKSPDWKPNFLNNDSKRQHFKNPDNDPR 276

Query: 182 SDWL 185
             W 
Sbjct: 277 GPWF 280



 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 20/86 (23%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQ- 255
           L  T KP  LL  IL  ++    I+LD F GS TS     +L       R FI +++ + 
Sbjct: 384 LFSTPKPTLLLKYILTIASDNNAIVLDFFSGSATSADAVMQLNAEDGGKRKFIMVQLPEV 443

Query: 256 ----DY---------IDIATKRIASV 268
               DY          +I  +RI   
Sbjct: 444 CESGDYGNAVKLKNICEIGKERIRRA 469


>gi|166367164|ref|YP_001659437.1| putative type III restriction-modification system, methylation
           subunit [Microcystis aeruginosa NIES-843]
 gi|166089537|dbj|BAG04245.1| putative type III restriction-modification system, methylation
           subunit [Microcystis aeruginosa NIES-843]
          Length = 360

 Score = 65.8 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 77/216 (35%), Gaps = 29/216 (13%)

Query: 17  FEWKDKIIKGNSISVLEKL-----PAKSVDLIFADPPYNLQL----------------NG 55
            +W +++I G+S+  +  L         V +I+ DPPY ++                 + 
Sbjct: 57  DKWVNRMILGDSLVTMNSLLQYEGMGGKVQMIYIDPPYGVKFGSNFQPFVRKRDVKHNDD 116

Query: 56  QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
             +  +  +V A  D+W+      +Y ++ R  LL  R  L  +G+++V  S  N+  + 
Sbjct: 117 DDFTREPEMVQAYRDTWE--LGLHSYLSYLRNRLLLSREFLTDSGSVFVQISDENVHHVR 174

Query: 116 TMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
            ++  +         +  K+  M        +   + +I+ +   +              
Sbjct: 175 ELMDEVFGGENFVANITYKTKKMTMGNTSTIETIGDHIIFYAKCIRNLK-----CHSLFT 229

Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
            +D +    W        ER      E+ +P   PE
Sbjct: 230 FKDWREDHHWRYIELPNGERRTMTTEERNNPDTIPE 265


>gi|118498062|ref|YP_899112.1| adenine specific DNA methylase [Francisella tularensis subsp.
           novicida U112]
 gi|194323287|ref|ZP_03057071.1| DNA methylase domain protein [Francisella tularensis subsp.
           novicida FTE]
 gi|118423968|gb|ABK90358.1| adenine specific DNA methylase [Francisella novicida U112]
 gi|194322651|gb|EDX20131.1| DNA methylase domain protein [Francisella tularensis subsp.
           novicida FTE]
          Length = 660

 Score = 65.8 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 85/267 (31%), Gaps = 38/267 (14%)

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIG--TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAH 149
             R+ +P G   V    +    +    + +N N  I+  +         ++  R+    +
Sbjct: 299 ASRINRPKGYFPVFIDKNEKIYVTENDLPENRNDTIIYPVNDNGDELSWSWGKRKIMQEN 358

Query: 150 ETLIWASPSPKAKGYTFNYDALK--AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
             LI    S     Y      +      +             + +  L+ + G+K+    
Sbjct: 359 YNLILKKTSNGFSIYKKQRPGIGDLPTKKAKSFLYKTEYSSTTATNYLKKEFGKKIFDNP 418

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQ------ 255
           KP  LL  +++      D+ILD F GSGT+G    +L       R +I  ++ +      
Sbjct: 419 KPLPLLKDLIILGLNSNDVILDFFAGSGTTGDAVMQLNAEDGGKRKYILAQLDEPIDEKK 478

Query: 256 ---DYID----------IATKRI----ASVQPLGNIELTVLTGKRTEPRVAFNLLVERGL 298
               +            I  +R+      ++     E      K+   +     L E+  
Sbjct: 479 EAYKFCTDKNFEPVISSITIERLNRAGEKIKADIQAEFDAENSKKKPNQEKLAELQEKLE 538

Query: 299 ----IQPGQILTNAQGN-ISATVCADG 320
               +  G  + + +     A V  DG
Sbjct: 539 NISKLDIGYKVFSLKDKPCIAEVTNDG 565



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 56/161 (34%), Gaps = 18/161 (11%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVD- 66
           E        ++ +I+G++I  L+ L A     + +I+ DPPYN +    +Y  +    + 
Sbjct: 94  EQSKDFDNTENVVIRGDNIDTLKILRANYTNKIKMIYIDPPYNTKSENFVYNDNFKKNEE 153

Query: 67  ------AVTDSWDKF-------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
                  + +    F        S   + +F    L   R +LK +G +++    +    
Sbjct: 154 ELIKEFGLAEETQNFLTNVYGTRSHSGWLSFMYPRLKIARELLKEDGVIFISIDDNEQAN 213

Query: 114 IGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           +  +   +         +    N   N     F   HE + 
Sbjct: 214 LKIICDEIFGEENFVACLPTIMNLKGNHDNYGFAETHEYIF 254


>gi|298575372|ref|YP_003727984.1| type II R/M system modification methylase [Methanocaldococcus
           jannaschii DSM 2661]
 gi|11386929|sp|Q58606|MTM6_METJA RecName: Full=Modification methylase MjaVI; Short=M.MjaVI; AltName:
           Full=N-4 cytosine-specific methyltransferase MjaVI
 gi|2826377|gb|AAB99220.1| modification methylase, type II R/M system [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 194

 Score = 65.8 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 68/190 (35%), Gaps = 26/190 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            +I  + ++V   LP +S+DLI   PPYN+ ++   +              D    +E Y
Sbjct: 16  TLINDDFLNV--DLPNESIDLIVTSPPYNVGIDYNQH--------------DDTIPYEEY 59

Query: 82  DAFTRAWLLACRRVLKPNGTLWVI--------GSYHNIFRIGTMLQNLNFWILNDIVWRK 133
             +T+ WL     +LK +G L +         G       I  +  ++ F     I+W +
Sbjct: 60  LDWTKQWLKKALTLLKKDGRLCLNIPLDKNKGGIKPVYADIVKIALDVGFKYQTTIIWNE 119

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
            N         F +A    + A        Y  ++  L     D+    +  I   +G  
Sbjct: 120 QNISRRTAWGSFMSASAPYVIAPVETIVVLYKESWKKLSKGESDIT--KEEFIEWTNGLW 177

Query: 194 RLRNKDGEKL 203
               +  ++L
Sbjct: 178 TFPGESKKEL 187


>gi|320101128|ref|YP_004176720.1| DNA methylase N-4/N-6 domain-containing protein [Desulfurococcus
           mucosus DSM 2162]
 gi|319753480|gb|ADV65238.1| DNA methylase N-4/N-6 domain protein [Desulfurococcus mucosus DSM
           2162]
          Length = 319

 Score = 65.8 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 38/83 (45%)

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           D    I S  +R         +    P  +   +++  T+PG+I+LDP  GSGT+   A 
Sbjct: 45  DVSTTIWSFPKRGSWATHRGDYRGNWPPQMARALILGYTEPGEIVLDPMAGSGTTCIEAV 104

Query: 243 KLRRSFIGIEMKQDYIDIATKRI 265
            L R  I +++  + + +   R+
Sbjct: 105 LLGRKCIAVDINYNAVMLTHHRL 127



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 19/145 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++  G++   L+++   +VDL+   PPY   + G     D  L +A         + E Y
Sbjct: 156 RVFHGDARR-LDEIRDNTVDLVATHPPYF-NIIGYGGNVDGDLSNA--------RTLEEY 205

Query: 82  DAFTRAWLLACRRVLKPNGTL-WVIGSYHNI-------FRIGTMLQNLNFWILNDIV-WR 132
             + R       RVLKP      +IG                 +  +  F +  +++  +
Sbjct: 206 LEWLREVAGEIYRVLKPGRYCGILIGDTRVHGHYVPITHYALEVFLDAGFILKEEVIKIQ 265

Query: 133 KSNPMPNFRGRRFQNAHETLIWASP 157
                      R +  +  LI+   
Sbjct: 266 HKMKTTREVWNRLRKRNFLLIYHEK 290


>gi|308061353|gb|ADO03241.1| type II DNA modification enzyme [Helicobacter pylori Cuz20]
          Length = 346

 Score = 65.8 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 36/67 (53%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +PT+K   LL  I+ +S+    I+LD F GSGT+   A  L+R FIGI+     I     
Sbjct: 266 YPTEKNAQLLDLIIKTSSNKDSIVLDCFCGSGTTLKSAFLLQRKFIGIDNSCLAIQACKN 325

Query: 264 RIASVQP 270
           ++ ++  
Sbjct: 326 KLETITK 332



 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 80/205 (39%), Gaps = 23/205 (11%)

Query: 18  EWKDKIIKG-NSISVL-----EKLPAKSVDLIFADPPYNLQL-----NGQLYRPDHSLVD 66
           E ++ +I+  N+I++L     + L  K +DLI+ DPP+         NG+     +S   
Sbjct: 3   EMQNLLIQAENAIALLFLLNDKNLKGK-IDLIYIDPPFATNNHFTITNGRATTISNSKNG 61

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW-- 124
            +  S DK    + +  F +  L+  + +L   G+++V         +  ML  +     
Sbjct: 62  DIAYS-DKVVGMD-FIEFLKQRLVLLKELLSEQGSIYVHTDCKIGHYVKVMLDEIFGIQN 119

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP------SPKAKGYTFNYDALKAANEDV 178
             N+I   K NP  NF+   + N  + +++ S       +     YT      +    D 
Sbjct: 120 FRNEITRIKCNP-KNFKRMGYGNIKDMILFYSKGKNPIFNEPKIPYTPQDLEKRFPKIDK 178

Query: 179 QMRSDWLIPICSGSERLRNKDGEKL 203
             R    +PI +  E    +  +  
Sbjct: 179 NKRRYTTVPIHAPGEVESGECSKAF 203


>gi|115289060|gb|ABI85543.1| M.Hin1056ModP-3 [Haemophilus influenzae]
          Length = 361

 Score = 65.8 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 21/149 (14%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       + LI+ DPPYN   +G  Y              DKF +
Sbjct: 207 NLIIKGNNLIALHSLAKQFKGKIKLIYIDPPYNTGNDGFKY-------------NDKF-N 252

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS--- 134
              +  F +  L   + +L  +G ++V    +    +  ++  L       +    +   
Sbjct: 253 HSTWLTFMKNRLEIAKTLLADDGVIFVQCDDNEQAYLKILMDELFHHRETIVALTSTASG 312

Query: 135 -NPMPNFRGRRFQNAHETLIWASPSPKAK 162
            N +   RG +     E +++ S SPK +
Sbjct: 313 VNAVNVKRGEQMFKLKEYILFYSKSPKFR 341


>gi|120608867|ref|YP_968545.1| adenine-specific DNA-methyltransferase [Acidovorax citrulli
           AAC00-1]
 gi|120587331|gb|ABM30771.1| Site-specific DNA-methyltransferase (adenine-specific) [Acidovorax
           citrulli AAC00-1]
          Length = 668

 Score = 65.8 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 71/207 (34%), Gaps = 20/207 (9%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNG--------------QLYRPDH 62
           ++ +I+G+++ VL+ L    A  V LI+ DPPYN   +               +L     
Sbjct: 103 QNLMIEGDNLEVLKLLQKSYAGKVKLIYIDPPYNTGKDFVYPDNFQNGIQNYLELTGQTE 162

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
           S V   +++         +       L   R++LK +G ++V      + R+   L  L 
Sbjct: 163 SGVKVSSNTEASGRFHTDWLNMMYPRLKLARQLLKEDGAIFVSIDDIELPRLKIALDELF 222

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
                   +   +        + +  HE ++  + S     +    D     +  +    
Sbjct: 223 GEDNLIAQFVWRSDGNFDNQAKVKVCHEYIVAYAKSAPNFAHPPVVDPSTPTDSKIFRPQ 282

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKP 209
                + +G +   N   E L P   P
Sbjct: 283 IRNTIVKNGPK---NPPSEILLPAGFP 306


>gi|258514663|ref|YP_003190885.1| adenine-specific DNA methylase [Desulfotomaculum acetoxidans DSM
           771]
 gi|257778368|gb|ACV62262.1| adenine-specific DNA methylase [Desulfotomaculum acetoxidans DSM
           771]
          Length = 540

 Score = 65.8 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 2/106 (1%)

Query: 187 PICSGSERLRNKDGEKLHP--TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           PI    E   +     +H    +KP  L++  +   T PGD++LDPF GSG +   A KL
Sbjct: 5   PIDYPIEAQTHPAHYLMHKYWARKPHNLVNAYIKHFTGPGDLVLDPFMGSGVTVIEALKL 64

Query: 245 RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAF 290
           +R   G+++      IAT  I  V      E   L      P +  
Sbjct: 65  KRRVCGVDINPVAHFIATNTIVPVSLSELQENYTLLSGHIAPVINK 110



 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 45/133 (33%), Gaps = 20/133 (15%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLN------------GQLYRPDHSLVDAVTDSWDKFSSFE 79
           L +L   SVD IF DPPY   +             G        +V +  ++++K  S E
Sbjct: 310 LPQLADNSVDYIFTDPPYGGSVPYLEMSALWAAWLGFSLNYREEIVVSKNETYNK--SLE 367

Query: 80  AYDAFTRAWLLACRRVLKPNGTL---WVIGSYHNIFRIGTMLQNLNFWILNDIVW---RK 133
            Y     A      + LK    +   +          +   ++   F ++N +     + 
Sbjct: 368 NYRQMLLAAFSEIYKKLKNGSYMSITFHNKDLRTWRALLYSVREAGFTMVNLVHQPQAKL 427

Query: 134 SNPMPNFRGRRFQ 146
           S+    +  +R  
Sbjct: 428 SSSQGLYHKKRIT 440


>gi|16082511|ref|NP_393798.1| adenine-specific DNA methylase [Thermoplasma acidophilum DSM 1728]
          Length = 346

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 5/113 (4%)

Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
           R  +  + +   +  P+   Y+    +      DV   S W+       ER  +      
Sbjct: 70  RAIHYADEIYRMAFRPRKLPYSDMDLSRWREYGDVITDSLWIF-----KERDYSGSKLGW 124

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           +       +  ++++  TK  + ++DPF GSGT+   AKKL R+ IGIE+  +
Sbjct: 125 YWGNFVPQIPRQMMMRYTKRNEWVIDPFSGSGTTLIEAKKLGRNAIGIEINPE 177


>gi|254293997|ref|YP_003060020.1| Site-specific DNA-methyltransferase (adenine-specific) [Hirschia
           baltica ATCC 49814]
 gi|254042528|gb|ACT59323.1| Site-specific DNA-methyltransferase (adenine-specific) [Hirschia
           baltica ATCC 49814]
          Length = 546

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 7/75 (9%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMK 254
           +++  T KP  L+ R+L   + P D+ILD F GSGT+G     L       R FI +EM 
Sbjct: 323 DEIFATPKPSTLIQRLLEIGSNPDDLILDSFAGSGTTGHAVLDLNKQDGGNRKFILVEMD 382

Query: 255 QDYI-DIATKRIASV 268
           Q    D+  +R+  V
Sbjct: 383 QKIAPDVTAERLKRV 397



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 73/205 (35%), Gaps = 18/205 (8%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHS-------LVDAVTD 70
           + +++G+++  L+ L       V  I+ DPPYN    G +Y  + +       L   V  
Sbjct: 39  NLLVQGDNLGALKALLPYYAGKVKCIYIDPPYNTGNEGWVYNDNVNSPEIKAWLEKTVGK 98

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILND 128
             +  S  + +       L   R  L+ +G ++V        R+  +L  +      +  
Sbjct: 99  EGEDLSRHDKWLCMMYPRLRLLREFLREDGAIFVSIDDDENHRLRVLLDEIFGSQNFIAS 158

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLI----WASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
           ++W+K    P    + F + H+ ++      S     K         + +N D   R  W
Sbjct: 159 LIWQKKYA-PAGDAKYFSDDHDYVLVYGKHKSRWVPNKLARTEEQNARYSNPDNDPRGPW 217

Query: 185 LIPICSGSERLRNKDGEKLHPTQKP 209
                + S +   +     +P   P
Sbjct: 218 KADNYA-SNKNNTERPNGWYPVLNP 241


>gi|316997321|dbj|BAJ52769.1| type II DNA modification enzyme [Campylobacter lari]
          Length = 672

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 74/183 (40%), Gaps = 20/183 (10%)

Query: 1   MSQKNSLAINENQNSIFEWKD-KIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQ 56
           +S++N   + ++  ++ E  + +++K ++   L  L  K    +DLI+ DPPYN   +G 
Sbjct: 355 LSEENYYKLLQSFENLDEILNGELVKADNFQALNSLMPKYQGKIDLIYIDPPYNTGNDGF 414

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
           +Y              DKF +  ++ A  +  L   +  LK +G++++    +   R+  
Sbjct: 415 VYT-------------DKF-NHSSWLAMMKNRLDLAKEFLKNSGSIFISIDDNEQARLKI 460

Query: 117 MLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
           +   +      + +++WRK     N             I+A      K Y      +   
Sbjct: 461 LCDEVFGEENFVANVIWRKRAGGGNDSNHIAVEQEYINIYAKNIEHLKTYGIARTNISHY 520

Query: 175 NED 177
            +D
Sbjct: 521 KKD 523



 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 1/88 (1%)

Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
           K Y  +Y  + +  +   +  D+++   + +E   N +  K+  T KPE LL RI    +
Sbjct: 586 KVYYKHYIDIASNLKPSSIWYDFVLNADATNEIKLNFE-NKIFDTPKPEKLLKRICDIGS 644

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFI 249
               ++LD F GSGT+ A A KL+R ++
Sbjct: 645 NQNSLVLDFFVGSGTTIATAHKLKRKWL 672


>gi|115289057|gb|ABI85541.1| M.Hin1056ModP-3 [Haemophilus influenzae]
          Length = 404

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 21/149 (14%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       + LI+ DPPYN   +G  Y              DKF +
Sbjct: 207 NLIIKGNNLIALHSLAKQFKGKIKLIYIDPPYNTGNDGFKY-------------NDKF-N 252

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS--- 134
              +  F +  L   + +L  +G ++V    +    +  ++  L       +    +   
Sbjct: 253 HSTWLTFMKNRLEIAKTLLADDGVIFVQCDDNEQAYLKILMDELFHHRETIVALTSTASG 312

Query: 135 -NPMPNFRGRRFQNAHETLIWASPSPKAK 162
            N +   RG +     E +++ S SPK +
Sbjct: 313 VNAVNVKRGEQMFKLKEYILFYSKSPKFR 341


>gi|320162288|ref|YP_004175513.1| hypothetical protein ANT_28870 [Anaerolinea thermophila UNI-1]
 gi|319996142|dbj|BAJ64913.1| hypothetical protein ANT_28870 [Anaerolinea thermophila UNI-1]
          Length = 483

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 3/79 (3%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
            P + P  L    + + T+PG+I+LDP  GSGT+   A    R  IG+++    + I+  
Sbjct: 61  FPAKFPPQLPRLFIENLTQPGEIVLDPMAGSGTALLEACIAGRQAIGLDIDPLALRIS-- 118

Query: 264 RIASVQPLGNIELTVLTGK 282
             A V PL   ++     K
Sbjct: 119 -YAKVHPLNTEQVLQSLHK 136


>gi|48243679|gb|AAT40808.1| type III restriction-modification system methyltransferase-like
           protein [Haemophilus influenzae]
          Length = 518

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 68/177 (38%), Gaps = 28/177 (15%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       V LI+ DPPYN   +G  Y              DKF +
Sbjct: 203 NLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTGNDGFKY-------------NDKF-N 248

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSN 135
              +  F +  L   +++L  +G ++V    +    +  ++  +      +N I+   SN
Sbjct: 249 HSTWLTFMKNRLEIAKKLLADDGVIFVQCDDNEQAYLKILMDEIFERENFINTIIPEMSN 308

Query: 136 PMPNF-----RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
              N      +G++F    E ++  +          N    K A E      + +IP
Sbjct: 309 ASGNKIKHAIKGKKFPKLKEYILLYAKDKN----QINLTIPKQAKEKWDKEYNQIIP 361


>gi|324115262|gb|EGC09226.1| DNA methylase [Escherichia fergusonii B253]
          Length = 424

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 53/150 (35%), Gaps = 16/150 (10%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
           NS F+    +  G++++ L          +DL + DPPYN       +    ++  ++  
Sbjct: 37  NSSFDS--SLYIGDNLAYLRSFAETTPNIIDLCYIDPPYNTGNKFIYHDNRKAITSSI-- 92

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN---FWILN 127
               F     + +F    L     +LK  G + +    +    +  ++  +     +I  
Sbjct: 93  ----FGKHGEWMSFMLPRLACAHELLKKTGIIAISIDDYEYAYLKILMDQIFGEDNFIGC 148

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
            +V R  N       R    +HE L+    
Sbjct: 149 IVVCRSKNGKG--SNRNIATSHEYLLIYGK 176


>gi|332289951|ref|YP_004420803.1| DNA methylase [Gallibacterium anatis UMN179]
 gi|330432847|gb|AEC17906.1| DNA methylase [Gallibacterium anatis UMN179]
          Length = 258

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 5/103 (4%)

Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
                 N D+ + S W+I       + +N       P Q P  L+ R     T+ GD +L
Sbjct: 1   MQEDWKNSDLNVDSLWIIDKRDKRGKHKNVYHGNFIP-QIPYQLIKR----YTEEGDTVL 55

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           D F GSGT+    + L R+FIG ++ Q  ID    +++S  P+
Sbjct: 56  DLFMGSGTTLYECENLNRNFIGFDINQSIIDYVFSQMSSATPI 98


>gi|254448305|ref|ZP_05061767.1| adenine specific DNA methylase Mod [gamma proteobacterium HTCC5015]
 gi|198262172|gb|EDY86455.1| adenine specific DNA methylase Mod [gamma proteobacterium HTCC5015]
          Length = 706

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 11/138 (7%)

Query: 21  DKIIKGNSISVLEKL---PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
             +I G +   LE L       VD I+ DPPYN       Y  D+          +    
Sbjct: 140 HTVINGENFHALEALTYTHRGKVDAIYIDPPYNSGAKDWKYNNDYV-------EKEDLYR 192

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIG-SYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
              + AF    L   + +L PN ++ ++        R+G +L+ L      D+V    NP
Sbjct: 193 HSKWLAFMERRLKVAKELLNPNNSILIVAIDDKEYARLGLLLEQLFPEARIDMVTTVINP 252

Query: 137 MPNFRGRRFQNAHETLIW 154
              +R  +F  + + + +
Sbjct: 253 RGKYRAGQFARSEDYIYF 270



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 18/135 (13%)

Query: 170 ALKAANEDVQMRSDWLIPICS----GSERLRNKDGEKLHPTQKPEALLSRILV--SSTKP 223
           A   +++     + WL P  +    G+E +++  GEK  P  K    +   L       P
Sbjct: 424 AEYVSHKMKMPTTTWLRPSHNAEVYGTELVKDLLGEKSFPYPKSLYAVEDCLRLFIGDNP 483

Query: 224 GDIILDPFFGSGTSGAVAKKLR------RSFIGI---EMKQDYIDIATKRIASVQPLG-N 273
             I+LD F GSGT+     +L       R  I +   E+  +  +    R   ++P   +
Sbjct: 484 KAIVLDFFSGSGTTAHAVMRLNKQDSGARQCICVTNNEVSDE--ESIKLRKKKLRPGDFD 541

Query: 274 IELTVLTGKRTEPRV 288
            E   +    T+PR+
Sbjct: 542 WEKHGICEYVTKPRI 556


>gi|217031873|ref|ZP_03437376.1| hypothetical protein HPB128_199g81 [Helicobacter pylori B128]
 gi|216946525|gb|EEC25127.1| hypothetical protein HPB128_199g81 [Helicobacter pylori B128]
          Length = 374

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 60/156 (38%), Gaps = 17/156 (10%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHS--------LVDAV 68
           K  +IKG+++  L+ L    ++ + +I+ DPPYN +    +Y  D S         +D  
Sbjct: 89  KHILIKGDNLDALKILRQSYSEKIKMIYIDPPYNTKNENFIYGDDFSQSNEEVLKQLDYS 148

Query: 69  TDSWDKFSSF------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
            +  D   +         + +F    LL  + +LK +G +++    +   ++  +   + 
Sbjct: 149 KEKLDYIKNLFGSKCHSGWLSFMYPRLLLAKDLLKQDGVIFISIDDNEAAQLKLLCDEIF 208

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
                               + FQN +E ++  +  
Sbjct: 209 GERNFLSSLTWLKGNAQNDAQYFQNNYENILVYAKH 244


>gi|306836046|ref|ZP_07469036.1| DNA (cytosine-5-)-methyltransferase [Corynebacterium accolens ATCC
           49726]
 gi|304568073|gb|EFM43648.1| DNA (cytosine-5-)-methyltransferase [Corynebacterium accolens ATCC
           49726]
          Length = 416

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 65/176 (36%), Gaps = 5/176 (2%)

Query: 6   SLAINENQNSIFEWKDKIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHS 63
              I+   +S+ +  + I   +++ VL+      ++ D+I+ DPPYN   +        +
Sbjct: 37  EFEIDAALSSVTDSPNSIHLADNLPVLQHWVTSGETFDVIYIDPPYNTGRDFVYRDNYRA 96

Query: 64  LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-N 122
             +  + S+ ++ +   + +     L+  RRVL  NG ++V            +L  +  
Sbjct: 97  RREVNSGSYAQWHA--EWLSMMLPRLILARRVLAENGFIFVSIGEDEAANTRKVLDEVFG 154

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
                     K         +     HE ++  + +P   G+  + +   +   + 
Sbjct: 155 EGCYAGQFIWKKAGTGKNDSKYAVVEHEYILCYAKNPDNPGFNLDAEGYTSTKYNH 210



 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 35/121 (28%)

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
                 +        R R  ++  E         +   YT NY    A    +     + 
Sbjct: 243 AQHWPDQPDGHSRVARWRWGKDMVEKRYDELVFRRGFVYTKNYQKAGARPRSILDGQRFG 302

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +      +       E +    KP  L+  ++         +LD F GSGT+      L 
Sbjct: 303 VTRTGRRDAEDVMGVEGIFEFPKPVRLIKHLIAIGGGDDARVLDFFAGSGTTAQAVIDLN 362

Query: 246 R 246
           R
Sbjct: 363 R 363


>gi|330465467|ref|YP_004403210.1| DNA methylase N-4/N-6 domain-containing protein [Verrucosispora
           maris AB-18-032]
 gi|328808438|gb|AEB42610.1| DNA methylase N-4/N-6 domain-containing protein [Verrucosispora
           maris AB-18-032]
          Length = 331

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 4/119 (3%)

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK--DGEKLHPTQKPEALL 213
           SP    +G   +YD    A+ D      W     +G  + R +       HP +   A+ 
Sbjct: 21  SPGNDYQGRHHDYDDRHRADPDGLS--VWTTAQTTGPVQRRGRYVPESVKHPARMLPAIA 78

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
           +  + + T+PGD++LDP  G GT+   A    R   GIE +  + +IA   I      G
Sbjct: 79  AHAIDAYTQPGDLVLDPMCGIGTTLVEAVHAGRDAFGIEYEPQWSNIADANIRHAHDQG 137



 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 12/92 (13%)

Query: 23  IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS-- 77
           +I+G++  ++  +P      V L+   PPY   ++G L RP    V    D ++      
Sbjct: 144 VIRGDATRLISLVPKALTGQVALVVTSPPYGPTVHG-LVRPGADGVVKYDDRYNDGEDRG 202

Query: 78  FEAYDAFT------RAWLLACRRVLKPNGTLW 103
             AY   T         L  C  +L+P G + 
Sbjct: 203 NLAYRDLTGLADGFTQILAGCATLLRPGGVVV 234


>gi|47459296|ref|YP_016158.1| type III restriction-modification system methylase [Mycoplasma
           mobile 163K]
 gi|47458626|gb|AAT27947.1| type III restriction-modification system methylase [Mycoplasma
           mobile 163K]
          Length = 549

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 75/228 (32%), Gaps = 17/228 (7%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQ--LNGQLYRPDHSLVDAV 68
           N I   ++K+I G++ + L+ L       +++I+ DPPYN +  L          +    
Sbjct: 82  NEIQNDENKLIIGDNYNALKSLKITHKGKINIIYIDPPYNTESALKDGNSSSKEKITSTS 141

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWIL 126
             ++        +       L+  + +L   G ++V         +  ++ N+      +
Sbjct: 142 KFAYKDKFGRGGWLNMINERLILAKDLLTDEGLIFVSIDDSEQAYLKVLMDNIFGEDNFV 201

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N I W  +              +E ++  S +   K + FN    + A + +    +   
Sbjct: 202 NQIAWVSNKKGRQISNSLLAKTYEYILIYSKNSD-KEFKFNKLDQEYAKKIMPSIYEKTD 260

Query: 187 PICSGSERLRNKDGEKLH---------PTQKPEALLSRILVSSTKPGD 225
                 E        +LH          T+K       I+ +     D
Sbjct: 261 YEIMRDEYGEFVIKNELHNSNIKAFNINTRKNLFFPLFIIENEIFTND 308



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 11/138 (7%)

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            +  +   + +N+ + L     + + K YT   D      + +       I   SG+   
Sbjct: 328 GVWRWSKEKIENSKQDLYIDEKNNQIKIYTKIRDMSIFPKDVILSPK---ISTKSGTSEF 384

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFI 249
                E+     KP  LL  ++  S     I+LD F GSGT+G    +L       R+FI
Sbjct: 385 LQIFEEEKFQYPKPVELLKFLIKISGNKNSIVLDFFAGSGTTGQAVLELNKEDGGNRNFI 444

Query: 250 GIEMKQDYI--DIATKRI 265
                ++ I  +I+ +R+
Sbjct: 445 LCTNNENNIAEEISYERL 462


>gi|71897935|ref|ZP_00680140.1| Site-specific DNA-methyltransferase (adenine-specific) [Xylella
           fastidiosa Ann-1]
 gi|71732179|gb|EAO34234.1| Site-specific DNA-methyltransferase (adenine-specific) [Xylella
           fastidiosa Ann-1]
          Length = 534

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 7/107 (6%)

Query: 152 LIWASPSPKAKGYT-FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
           +++         Y  F ++A         + +D      +  E +   DGEK+  T KP 
Sbjct: 274 IVFGKHGTGKPQYKRFLFEAAGKGKNIFTIWNDVGTATEATKELMAIFDGEKMFNTPKPV 333

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGI 251
           +L+ RIL  +T     +LD F GSGT+     KL       R FI I
Sbjct: 334 SLIERILSVATDKEAWVLDFFAGSGTTAHAVAKLNAEDGGHRRFILI 380



 Score = 62.7 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 10/112 (8%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
            +    W + II+G++   L  L      ++  I+ DPPYN      +Y       D   
Sbjct: 55  SHGAAPWPNLIIEGDNFDALRALRMTHRGAIRCIYIDPPYNTGNRDFVYN------DCFI 108

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
           D   ++     +  F    L   + +L  +G ++V    + +FR+G ++  +
Sbjct: 109 DKTHRYRH-SLWLEFIYRRLQLAKELLADDGVIFVSIDDNELFRLGMLMDRV 159


>gi|72536117|gb|AAZ73166.1| PstII restriction-modification enzyme Mod subunit [Providencia
           stuartii]
          Length = 561

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 7/69 (10%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYID- 259
            KP  L+S ++ + T   DIILD F GSGT+G    +L       R FI IE+K++ +D 
Sbjct: 328 PKPVNLISYLIEAFTGENDIILDSFAGSGTTGHAVLQLNKNKSTNRKFILIELKKETVDS 387

Query: 260 IATKRIASV 268
           +   R+ +V
Sbjct: 388 VIIPRLQAV 396



 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 50/145 (34%), Gaps = 18/145 (12%)

Query: 17  FEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
            + ++ +I G+++  L+ L    +  +  ++ DPPYN                   +S+D
Sbjct: 36  DDSENLLIHGDNLLALKALEHDYSGKIKCVYIDPPYNTG--------------TAFESYD 81

Query: 74  KFSSFEAYDAFTRAWLLACRRVL-KPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
                  + +  R  L    R+L   NG L +  +   +  +  +  ++           
Sbjct: 82  DGLEHSMWLSMMRDRLEIIWRLLSSNNGVLLISINDDELHYLKVLCDDVFGRDKFIANLI 141

Query: 133 KSNPMPNFRGRRFQNAHETLIWASP 157
            +         +  N HE ++  S 
Sbjct: 142 WNYEGNTDNQAKIINYHEYILVYSK 166


>gi|15838562|ref|NP_299250.1| methyltransferase [Xylella fastidiosa 9a5c]
 gi|9107074|gb|AAF84770.1|AE004016_4 methyltransferase [Xylella fastidiosa 9a5c]
          Length = 534

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 7/107 (6%)

Query: 152 LIWASPSPKAKGYT-FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
           +++         Y  F ++A         + +D      +  E +   DGEK+  T KP 
Sbjct: 274 IVFGKHGTGKPQYKRFLFEAAGKGKNIFTIWNDVGTATEATKELMAIFDGEKMFNTPKPV 333

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGI 251
           +L+ RIL  +T     +LD F GSGT+     KL       R FI I
Sbjct: 334 SLIERILSVATDKEAWVLDFFAGSGTTAHAVAKLNAEDGGHRRFILI 380



 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 47/115 (40%), Gaps = 10/115 (8%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
            E  +    W + II+G++   L  L      ++  I+ DPPYN      +Y       D
Sbjct: 52  TELSHGAAPWPNLIIEGDNFDALRALRMTHRGAIRCIYIDPPYNTGNRDFVYN------D 105

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
              D   ++     +  F    L   + +L  +G ++V    + +FR+G ++  +
Sbjct: 106 CFIDKTHRYRH-SLWLEFMYRRLQLAKELLADDGVIFVSIDDNELFRLGMLMDRV 159


>gi|147677458|ref|YP_001211673.1| hypothetical protein PTH_1123 [Pelotomaculum thermopropionicum SI]
 gi|146273555|dbj|BAF59304.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 413

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 2/99 (2%)

Query: 192 SERLRNKDGEKLHPT--QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
            ER R K   +LHP   +    L+   L    KPG  +LDPF GSGT+   A +L  + I
Sbjct: 48  PERERTKHVHRLHPYLGKFIPQLVEIFLRKYFKPGQTVLDPFCGSGTTLVQANELGINSI 107

Query: 250 GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
           G ++    + +   + A   P+   +      KRTE  V
Sbjct: 108 GCDISAFNVLLCRAKTAEYDPVKAQKEIQDILKRTEAEV 146


>gi|256846786|ref|ZP_05552241.1| LOW QUALITY PROTEIN: site-specific DNA-methyltransferase
           (adenine-specific) [Fusobacterium sp. 3_1_36A2]
 gi|256717752|gb|EEU31310.1| LOW QUALITY PROTEIN: site-specific DNA-methyltransferase
           (adenine-specific) [Fusobacterium sp. 3_1_36A2]
          Length = 589

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 65/205 (31%), Gaps = 19/205 (9%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS--- 77
           I+G+++ VL+ L       + +I+ DPPYN   +          ++       + S    
Sbjct: 61  IEGDNLEVLKLLQKSYHGKIKMIYIDPPYNTGKDFVYKDNFKDNIENYKKVTGQVSEERT 120

Query: 78  ------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFW 124
                          +       L   R +L  +G +++    +    +  +   +    
Sbjct: 121 KLTTNTDTDGRYHSNWLNMMYPRLKLARNLLTDDGVIFISIDENEGHNLRKICDEIFGEE 180

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
            L + +  +    P    + F   HE ++  S +             +  +    + +D 
Sbjct: 181 NLIEEIIWEKKFSPQNDAKYFSLNHEQVLCYSKNKNMFNRILLPMTEEQKSRYKNLDNDI 240

Query: 185 LIPICSGSERLRNKDGEKLHPTQKP 209
             P  SG   +     + ++P   P
Sbjct: 241 RGPWTSGDISVSRVTEKDIYPILTP 265



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 20/113 (17%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGI--- 251
           +K+    KP  L+ ++L+ ST+  DIILD F GS T+     +L       R +I +   
Sbjct: 345 KKVFDYPKPVKLVKKMLLISTENNDIILDFFSGSSTTAHSVMQLNAEDGGNRKYIMVQLP 404

Query: 252 ----EMKQDY-------IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
               E  + Y        +I  +RI         + ++    R +  + F + 
Sbjct: 405 ELCDESSEAYKAGYKNICEIGKQRIRRAGEKIKSDESLPLENREKLDIGFKVF 457


>gi|291288948|ref|YP_003517451.1| hypothetical protein pKF94_036 [Klebsiella pneumoniae]
 gi|290792080|gb|ADD63406.1| hypothetical protein pKF94-036 [Klebsiella pneumoniae]
          Length = 62

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
          + I GN I V+   P ++VDLI  DPPY +       R    +   VTD W + ++
Sbjct: 3  RFILGNCIDVMRGFPDRAVDLIVTDPPYLVGFKD---RQGRQIAGDVTDEWLQPAT 55


>gi|150026205|ref|YP_001297031.1| type III modification methyltransferase [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772746|emb|CAL44230.1| Probable type III modification methyltransferase [Flavobacterium
           psychrophilum JIP02/86]
          Length = 554

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 55/157 (35%), Gaps = 11/157 (7%)

Query: 12  NQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLY-------RPD 61
            QN      +KII G+++  L+ L  +    +  I+ DPPYN      +Y       +  
Sbjct: 35  QQNEPNNSGNKIIHGDNLEALKSLLPEYEGKIKCIYIDPPYNTGNESWVYNDNVNHPKIK 94

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
             L + V    +  +  + +       L    ++L  +G +++    +    +  +   +
Sbjct: 95  KWLGEVVGKDGEDLTRHDKWLCMMYPRLKLLHKLLAKDGAIFISIDDNEQAYLKLLCDEI 154

Query: 122 -NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
                    +   +N       +    AHE+L+    
Sbjct: 155 FGANNFVGNIAVVNNFKGRSDDKFIATAHESLLIFHK 191



 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 58/146 (39%), Gaps = 11/146 (7%)

Query: 164 YTFNYDALKAANEDVQMRSDWL---IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
           +  +Y   +  N+ ++ +S W        +G+ +L+    EK   T K    +   L  +
Sbjct: 302 FQKDYLEKEGINKRIKPKSFWHGSEFSSEAGTLQLKKIFQEKTFDTPKSVDFIEYCLQQA 361

Query: 221 TKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
           T    IILD F GSGT+      L       R FI IEM+     I  +R+  V      
Sbjct: 362 TDKNSIILDSFAGSGTTAHAVLNLNNHDGGNRKFILIEMEDYANRITAERVKRVINGYGE 421

Query: 275 ELTVLTGKRTEPRVAFNLLVERGLIQ 300
           E   + G  T+    F  L E   ++
Sbjct: 422 ESKKIEG--TDGSFNFYQLGEPLFLE 445


>gi|10639461|emb|CAC11463.1| probable type II DNA modification enzyme (methyltransferase)
           [Thermoplasma acidophilum]
          Length = 323

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 5/113 (4%)

Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
           R  +  + +   +  P+   Y+    +      DV   S W+       ER  +      
Sbjct: 47  RAIHYADEIYRMAFRPRKLPYSDMDLSRWREYGDVITDSLWIF-----KERDYSGSKLGW 101

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           +       +  ++++  TK  + ++DPF GSGT+   AKKL R+ IGIE+  +
Sbjct: 102 YWGNFVPQIPRQMMMRYTKRNEWVIDPFSGSGTTLIEAKKLGRNAIGIEINPE 154


>gi|114775609|ref|ZP_01451177.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Mariprofundus ferrooxydans PV-1]
 gi|114553720|gb|EAU56101.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Mariprofundus ferrooxydans PV-1]
          Length = 392

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 75/212 (35%), Gaps = 23/212 (10%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLN---GQLYRPDHSLVDAVTDSWD 73
           ++  I+G+++ VL+ L    A  V LI+ DPPYN   +      +R +      +T   D
Sbjct: 100 QNLFIEGDNLEVLKLLQKSYAGKVKLIYIDPPYNTGKDFVYKDDFRDNIKNYKKLTGQVD 159

Query: 74  KFSS------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
           +  S               +       L   R +L+ +G +++      +  + ++L  +
Sbjct: 160 EAGSPLTTNTEASGRFHTDWLNMMYPRLKLARNLLREDGLIFISIDDAEVSNLKSILNEI 219

Query: 122 N--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK---GYTFNYDALKAANE 176
                    I WR+ +  PN + +      E ++  + + +A    G          +N 
Sbjct: 220 YGEENFEGHIHWRRRHNQPNDKNKMLALVAEHILCYAKNKEAYKAAGVGKVEVTGNFSNP 279

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
           D   R +W                +   PT K
Sbjct: 280 DNDPRGEWASKPWKVGSGQSGSRYKITTPTGK 311


>gi|270055226|gb|ACZ58719.1| methyltransferase [Staphylococcus aureus]
          Length = 600

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 12/123 (9%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLY 58
            +     IN  +N I ++ + +++G+++    +LEK     +DLI+ DPPYN+       
Sbjct: 89  KEDKERKINGMKN-INDF-NFLLEGDNLHSLYLLEKTHTNKIDLIYIDPPYNMG------ 140

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
           + D    D   D  D +   + + +F ++ LL  +++L  +G L V   YH  F++  +L
Sbjct: 141 QKDFKYNDDYVDKDDNYYHSK-WLSFMKSRLLMAKKLLTEDGILAVSIDYHEGFQLKLLL 199

Query: 119 QNL 121
             +
Sbjct: 200 DEI 202



 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 65/177 (36%), Gaps = 29/177 (16%)

Query: 207 QKPEALLSRIL--VSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYI 258
           +KP  L+ +++  +   K   IILD F GSGT+      L       R +I     ++ I
Sbjct: 415 KKPLRLIKQLVMTLLGDKQDTIILDFFAGSGTTAHAVAALNKEDGGNRKYIICTNNENNI 474

Query: 259 --DIATKRIASVQPLG----NIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL------T 306
             ++  KR+ ++Q           T    K   P +     +E  L++    L      T
Sbjct: 475 CEEVTYKRLENIQSDLPHNVKYFKTCFIEKELFPDIE----LESELLKYITPLVELEFTT 530

Query: 307 NAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINT 363
           + +  +   + ++  L S  E  +I          E   G      E+   + S++ 
Sbjct: 531 DIKNPLYQIILSNEQLESLLESNNIKSNSVLFMHPEVLLG-----REEKKMIKSLDV 582


>gi|219882646|ref|YP_002477810.1| DNA methylase N-4/N-6 domain protein [Arthrobacter chlorophenolicus
           A6]
 gi|219861652|gb|ACL41993.1| DNA methylase N-4/N-6 domain protein [Arthrobacter chlorophenolicus
           A6]
          Length = 710

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 52/136 (38%), Gaps = 11/136 (8%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
             +I G +   LE L    A  +DLI+ DPPYN          D    D   DS D +  
Sbjct: 170 HTVINGENYHALEALQYTHAGKIDLIYIDPPYNTG------NADWKYNDRYVDSKDGYRH 223

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            + + +F    LL  + +LKP G + +        R+ + L +      N I     +  
Sbjct: 224 SK-WLSFMEKRLLIAKTLLKPTGVIVMAIGDDEHHRLRS-LSDQIIGEENFISSVVWSGG 281

Query: 138 PNFRGRRFQNAHETLI 153
                R   N+ + ++
Sbjct: 282 RKNDSRFISNSADYML 297



 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 22/46 (47%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           G+K  P  K   +LSR +        ++LD F GSGT+     +L 
Sbjct: 470 GDKRFPFPKDRTVLSRWIGLIAPKDAVVLDFFGGSGTTAEAVIRLN 515


>gi|300313855|ref|YP_003777947.1| hypothetical protein Hsero_4573 [Herbaspirillum seropedicae SmR1]
 gi|300076640|gb|ADJ66039.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 386

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 28/70 (40%)

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
              +   +     P   +LDPF G G++   A    R+ IGIE+    + +  +R+  + 
Sbjct: 36  VEQMQPFIAHLCPPEGRVLDPFCGFGSTLVAAHSQGRAGIGIEVDGSRVALTRQRLQRLS 95

Query: 270 PLGNIELTVL 279
           P        L
Sbjct: 96  PEAAEPAQQL 105



 Score = 42.7 bits (99), Expect = 0.085,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 17/150 (11%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
                E   ++I G++I++L +LP   VDL+ ++ PY         R       A +   
Sbjct: 95  SPEAAEPAQQLIHGDAITLLPQLPP--VDLVLSNIPYF------GCRWPEQATAAQSGQL 146

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI--------GSYHNIFRIGTMLQNLNFW 124
               ++  +       L   R  L+P G L +               + +  ++ +   +
Sbjct: 147 YAMQTYAGFLGMLERLLAGLRCCLRPGGWLVLCAENLRVGEHFVPLAWDLARLMADRFSF 206

Query: 125 ILNDIVWRKSNPMPNFRGR-RFQNAHETLI 153
           +   I+       P   G+ R   AHE  +
Sbjct: 207 VEERILLYDRASQPAAPGQMRSNRAHEYAL 236


>gi|270055448|gb|ACZ58941.1| Type III restriction-modification system methylation subunit
           [Staphylococcus aureus]
          Length = 586

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 12/123 (9%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLY 58
            +     IN  +N I ++ + +++G+++    +LEK     +DLI+ DPPYN+       
Sbjct: 75  KEDKERKINGMKN-INDF-NFLLEGDNLHSLYLLEKTHTNKIDLIYIDPPYNMG------ 126

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
           + D    D   D  D +   + + +F ++ LL  +++L  +G L V   YH  F++  +L
Sbjct: 127 QKDFKYNDDYVDKDDNYYHSK-WLSFMKSRLLMAKKLLTEDGILAVSIDYHEGFQLKLLL 185

Query: 119 QNL 121
             +
Sbjct: 186 DEI 188



 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 65/177 (36%), Gaps = 29/177 (16%)

Query: 207 QKPEALLSRIL--VSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYI 258
           +KP  L+ +++  +   K   IILD F GSGT+      L       R +I     ++ I
Sbjct: 401 KKPLRLIKQLVMTLLGDKQDTIILDFFAGSGTTAHAVAALNKEDGGNRKYIICTNNENNI 460

Query: 259 --DIATKRIASVQPLG----NIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL------T 306
             ++  KR+ ++Q           T    K   P +     +E  L++    L      T
Sbjct: 461 CEEVTYKRLENIQSDLPHNVKYFKTCFIEKELFPDIE----LESELLKYITPLVELEFTT 516

Query: 307 NAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINT 363
           + +  +   + ++  L S  E  +I          E   G      E+   + S++ 
Sbjct: 517 DIKNPLYQIILSNEQLESLLESNNIKSNSVLFMHPEVLLG-----REEKKMIKSLDV 568


>gi|126173814|ref|YP_001049963.1| DNA methylase N-4/N-6 domain-containing protein [Shewanella baltica
           OS155]
 gi|125997019|gb|ABN61094.1| DNA methylase N-4/N-6 domain protein [Shewanella baltica OS155]
          Length = 570

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 33/58 (56%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
            R + G +L   +KPE  L  I+   + P DI+LD   G G++ A A KL R FIGIE
Sbjct: 464 CRTEGGVELRSGKKPEKFLKVIINHFSNPEDIVLDYHLGCGSTAATALKLGRKFIGIE 521



 Score = 59.2 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 60/184 (32%), Gaps = 24/184 (13%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLY 58
           S+ N   +N +        + II+GN++  L  L    A  + LI+ DPPYN   +   Y
Sbjct: 171 SEVNEFDLNSDD-------NLIIRGNNLLALHSLKKKYAGKIKLIYIDPPYNTGSDSFGY 223

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
                         D F +   +  F +  L   + +L P+G +      +    +  ++
Sbjct: 224 -------------NDNF-NHSTWLTFMKNRLSCAKELLSPDGFICCHIDDNESAYLRVLM 269

Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
             +         +           ++  N H+ + +     ++     N      + E  
Sbjct: 270 DEVFGRDNFLTTFNIRVRYAEKTLKQDMNFHKEIEYVHIYQRSPASKPNLATKDNSIEKY 329

Query: 179 QMRS 182
               
Sbjct: 330 IYYF 333


>gi|147676486|ref|YP_001210701.1| adenine specific DNA methylase Mod [Pelotomaculum thermopropionicum
           SI]
 gi|146272583|dbj|BAF58332.1| adenine specific DNA methylase Mod [Pelotomaculum thermopropionicum
           SI]
          Length = 620

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 76/217 (35%), Gaps = 28/217 (12%)

Query: 18  EWKDK--I-IKGNSISVLEKLPA---KSVDLIFADPPYNLQLN----------------- 54
           +W++   I I+G+++  L+ L       +  I+ DPPYN   +                 
Sbjct: 93  DWENTGNIYIEGDNLEALKILQESYLNKIKCIYIDPPYNTGKDFIYKDNFKQSRIEYLAE 152

Query: 55  -GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
            GQ+    + L    T+S  +F S   + +     L   R +L+ +G +++    + +  
Sbjct: 153 SGQVDGDGNRLFQ-NTESNGRFHS--DWLSMMYPRLKLARNLLREDGVIFISIDDNEVHN 209

Query: 114 IGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
           +  +   +         +  +    P    R F   H+ +I  S +             +
Sbjct: 210 LRKICDEVFGERNFVATIIWQRAFSPVNLKRTFSENHDFIICYSKNKDIIEIKGLKRTDE 269

Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
           A +      +D   P  S    +     EK++P   P
Sbjct: 270 AESRYSNPDNDPRGPWTSTDLSVGPVVAEKVYPITTP 306



 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 20/89 (22%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGI-------EM 253
            KP  LL R+L  +T+  DIILD F GS T+     +L       R +I +       E 
Sbjct: 392 PKPVRLLKRLLELTTENNDIILDFFSGSATTAHAVMQLNAEDEGNRKYIMVQLPEPCPED 451

Query: 254 KQDYI-------DIATKRIASVQPLGNIE 275
            + Y        +I  +RI         E
Sbjct: 452 SEAYKAGFKNISEIGKERIRRAAKKIKEE 480


>gi|153007060|ref|YP_001381385.1| DNA methylase N-4/N-6 domain-containing protein [Anaeromyxobacter
           sp. Fw109-5]
 gi|152030633|gb|ABS28401.1| DNA methylase N-4/N-6 domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 947

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/304 (15%), Positives = 88/304 (28%), Gaps = 76/304 (25%)

Query: 36  PAKSVDLIFADPPYNLQLNGQLYRP-------------DHSLVDAVTDSWDKFSSFEAYD 82
             +SVDLI   PPY    +  LY                 + + +      +   F+ Y 
Sbjct: 296 EPESVDLIVTSPPYANATDYHLYHRFRLFWLGFDPRVLGSAEIGSHLRHQREKRGFDLYA 355

Query: 83  AFTRAWLLACRRVLKPN--------GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
                 L    R L+P         G ++      +  R+G +   +    L  +  +  
Sbjct: 356 DEMLGCLAGIARRLRPGRYCAMVIGGAVFDGKEVDSAARLGEIGTQVGLEWLGAVERKIH 415

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN------YDALKAANEDVQMRSDWLIPI 188
               +F     +   E ++     P++   TF       +            R   + P+
Sbjct: 416 ATRRSFVPAARRLGAEHIVIFRKPPRSLKVTFELPKYRLWPYEHELRLREVERVVGVAPV 475

Query: 189 ---------------------------------CSGSERLRNK---------------DG 200
                                            C+G +  + +                G
Sbjct: 476 SAAEGKLTATLDCYRVDRARRLALTSELTVGAACTGWQTWQARLENGAAARRDPKYVTHG 535

Query: 201 EKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
              +  +    L   +L +S ++PG  ILDPF GSGT    A+      +G ++    + 
Sbjct: 536 IHDYKGKFYPQLAKTLLNLSVSQPGCRILDPFCGSGTVLLEAQLSGHRAVGFDLNPLAVL 595

Query: 260 IATK 263
           I+  
Sbjct: 596 ISRA 599



 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 64/182 (35%), Gaps = 27/182 (14%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +P +    + + ++ + + PG+++ DPF GSGT+   A  L R  +  +       IA  
Sbjct: 79  YPAKFIPQIPANLIAALSLPGELVWDPFGGSGTTALEALLLGRQALSTDANPLAGHIARA 138

Query: 264 RIASVQPLGNIELTVLTGKRTEPRVAFNL--LVER------GLIQ--PG--QILTNAQGN 311
           +  ++ P     L  L  +     +   L   +ER      G +   P   Q  T     
Sbjct: 139 KCTALGPEQRDVLRALGQRVAALALDRGLEGFLERAWGAAKGFVPDIPNYEQWFTAQATR 198

Query: 312 ISATVCA--------DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINT 363
             A V          D  L+S   L SI  V      SET       Y  +       + 
Sbjct: 199 ELAYVRQLASAIADDDARLVSEVALSSI-VVAVSNQDSET------RYTRRDKGHRPGDV 251

Query: 364 LR 365
           LR
Sbjct: 252 LR 253


>gi|296159514|ref|ZP_06842338.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. Ch1-1]
 gi|295890222|gb|EFG70016.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. Ch1-1]
          Length = 673

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 42/107 (39%), Gaps = 18/107 (16%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM- 253
           +    T KP  L  +I+    +P  I+LDPF GSGT+     +L       R FI IE  
Sbjct: 433 DHGFTTVKPLRLFKKIIQIWCRPNGIVLDPFAGSGTTAHAVLELNAESDADRRFILIEQG 492

Query: 254 ----KQDYID-IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
                  Y   +  +R+  V     I      GKR   R  F   +E
Sbjct: 493 NTERGDHYAKTLTAERVKRV-----ITGDWAAGKRDPIRAGF-RFIE 533



 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 8/132 (6%)

Query: 21  DKIIKGNSISVLEKLPA--KSVDLIFADPPYNLQ----LNGQLYRPDHSLVDAVTDSWDK 74
           +++  G ++S +  L      VDLI  DPPYN       N +  +  +        + D 
Sbjct: 97  NELWDGENLSTMVTLYKHRGQVDLIITDPPYNTGEDFRYNDKWDKDPNDPDLGELVAKDD 156

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWR 132
            S    +  F    +   R +LKP G + +   +  ++R+G ++  +      L  I W+
Sbjct: 157 GSRHSKWLKFMTPRVWMMREMLKPGGVIAICIDHRELYRLGMLMDEIFGEDNRLAIINWQ 216

Query: 133 KSNPMPNFRGRR 144
           K+    N  G+R
Sbjct: 217 KTYAPKNNVGKR 228


>gi|257793073|ref|YP_003186471.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257479765|gb|ACV60082.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 571

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 52/153 (33%), Gaps = 10/153 (6%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPD------HSLVDAVTDS 71
           + II G++++ L+ L       V +IF DPPYN      +Y  +         +  V D 
Sbjct: 41  NLIIHGDNLTALKALLPMYAGKVKVIFIDPPYNTGSENWVYNDNVNSPMMREWLGKVVDK 100

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
            D  +  + +       L   R +L  +G ++V    +    +  +L  +          
Sbjct: 101 ED-LTRHDKWLCMMMPRLKLLRELLSDDGAIFVSCDDNEHHHLRMLLDEVFGDSNFVANI 159

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
                          +AH  ++  +   + +  
Sbjct: 160 VWQARKSVQNDTDISDAHNHIVVYAKMRRQRNR 192



 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 9/89 (10%)

Query: 188 ICSGSERLRNKDGEK-LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL-- 244
              GS+ L++  GE  +    KP  L+  IL  ++    IILD F GSGT+      +  
Sbjct: 339 TTRGSQTLQDIFGETGIFNNPKPVELVKHILRLASDKSSIILDSFAGSGTTAHAVLSMNK 398

Query: 245 ----RRSFIGIEMKQDYID-IATKRIASV 268
                R FI +EM +DY D I  +R+  V
Sbjct: 399 EDGGNRKFILVEM-EDYADRITAERVRRV 426


>gi|261419620|ref|YP_003253302.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           sp. Y412MC61]
 gi|319766437|ref|YP_004131938.1| DNA methylase N-4/N-6 domain protein [Geobacillus sp. Y412MC52]
 gi|261376077|gb|ACX78820.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           sp. Y412MC61]
 gi|317111303|gb|ADU93795.1| DNA methylase N-4/N-6 domain protein [Geobacillus sp. Y412MC52]
          Length = 477

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 59/191 (30%), Gaps = 5/191 (2%)

Query: 24  IKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV-TDSWDKFSSFE 79
           I+G+++  L+ L    A ++ +I+ DPPYN                 V +   ++     
Sbjct: 90  IEGDNLEALKLLRTSHAGTIQMIYIDPPYNTGKVLTYKDNWRKGKAVVPSGIQEEARGHV 149

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMP 138
            +       L   R +L   G +++         +  M   +            +    P
Sbjct: 150 GWLNMMYPRLWVARELLAETGAIFISIDDTEQANLRKMCDEIFGERNFVATFIWQRAFSP 209

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
               +     H+ ++  + +     +       +A        +D   P  SG   +   
Sbjct: 210 VNMNKFASRNHDFILCYAKNIDRLAWYGLPRHPEADVRYANPDNDPRGPWMSGDLSVGPP 269

Query: 199 DGEKLHPTQKP 209
             EK++    P
Sbjct: 270 IPEKIYKIVTP 280



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 26/119 (21%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV-----AKKLRRSFIGI-- 251
           DG  +    KP  L+ R++  +T+  D+ILD F GS T+        A+   R    +  
Sbjct: 358 DGLAVMDYPKPVKLIQRMVALTTRDDDLILDFFSGSATTAHAVMQQNAEDGGRRSFMMVQ 417

Query: 252 ------EMKQDY-------IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL-VER 296
                 E  + Y        DI  +RI         E  V    +TE  + F +  +ER
Sbjct: 418 LPERLAETSEAYRVGFRTICDIGRERIRRA-----GEKIVYETGKTELDIGFKVFRIER 471


>gi|159896647|ref|YP_001542894.1| DNA methylase N-4/N-6 domain-containing protein [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159889686|gb|ABX02766.1| DNA methylase N-4/N-6 domain protein [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 353

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 16/102 (15%)

Query: 175 NEDVQMRSDWLIPICSGS-ERLRNKDGEKLHPT--------QKPEALLSRILVSSTKPGD 225
           N+    R      I + S   +  +DG  +H          Q P  L+ R     TK GD
Sbjct: 96  NDINLNRWKEYDDINTDSLWMIDRRDGSGVHSAGYWGNFVPQIPNQLMRR----YTKQGD 151

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQ---DYIDIATKR 264
            ++D F GSGT+   A++L R+ +G+E++    +Y + A +R
Sbjct: 152 WVIDTFAGSGTTLIEAQRLGRNVLGVELQPHMVEYANQAVER 193


>gi|257124954|ref|YP_003163068.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Leptotrichia buccalis C-1013-b]
 gi|257048893|gb|ACV38077.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Leptotrichia buccalis C-1013-b]
          Length = 653

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 87/251 (34%), Gaps = 26/251 (10%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
            K    + ++  +    ++  I+G+++ VL+ L      S+ +I+ DPPYN   N  +Y 
Sbjct: 74  NKTLKFVAKDSKNADTTENIYIEGDNLEVLKLLRQNYYNSIKMIYIDPPYNTG-NDFVYN 132

Query: 60  PDHSLVDAVTDSWDKFSS----------------FEAYDAFTRAWLLACRRVLKPNGTLW 103
               +    +D  +   S                   +       L   R +L  +G ++
Sbjct: 133 DTFKMDKEESDKAEGIISENNEKLQKNQKSTNRYHANWLNMMYPRLKLARDLLTDDGVIF 192

Query: 104 VIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA- 161
           +    +    +  +   +       +I   +    P    ++ + + E ++    +    
Sbjct: 193 ISIDDNEQANLKRLCDEIFGEENFVEIFSWQKTSTPPNLSKKTKKSVEYILCYQKNECKT 252

Query: 162 -KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK-LHPTQKP-EALLSRI-L 217
            KG      +              + P  S    ++N+  EK ++ T+     LLS + +
Sbjct: 253 LKGLVKESKSTNGLMNQSNSIGTLVFPHESVETSIKNEKLEKGIYGTESYVIELLSDVEI 312

Query: 218 VSSTKPGDIIL 228
            +     DIIL
Sbjct: 313 RNGKFLNDIIL 323



 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 26/119 (21%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSF 248
                 +KL+P  KP +L++ +L       +IILD F GS T+     +L       R +
Sbjct: 389 FYKNFSDKLYP--KPTSLITYLLNMLELENNIILDFFSGSATTAHAIMQLNSEDDGNRKY 446

Query: 249 IGI-------EMKQDY-------IDIATKRI----ASVQPLGNIELTVLTGKRTEPRVA 289
           I +       E  + +        DI  +RI      ++       + L  +    +V 
Sbjct: 447 IMVQLPETTDEKSEAFKAGYKNIADIGKERIRRAGEKIKQEIEEYNSNLKLEEEPKKVP 505


>gi|188528291|ref|YP_001910978.1| type III DNA modification enzyme (methyltransferase) [Helicobacter
           pylori Shi470]
 gi|188144531|gb|ACD48948.1| type III DNA modification enzyme (methyltransferase) [Helicobacter
           pylori Shi470]
          Length = 633

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 18/158 (11%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSL--------VDAV 68
           K  +IKG+++  L+ L    ++ + +I+ DPPYN + +  +Y  D S         +D  
Sbjct: 89  KHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNDNFIYSDDFSQSNEEILKTLDYS 148

Query: 69  TDSWDKFSSF------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL- 121
            +  D   +         + +F    LL  + +LK +G +++    +   ++  +   + 
Sbjct: 149 KEKLDYIKNLFGSKCHSGWLSFMYPRLLLAKDLLKQDGVIFISIDDNQAAQLKLLCDEIF 208

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
                     RK+    N         HE L   + + 
Sbjct: 209 GERNFVADFIRKTKSTTNDAKTGVNYQHEFLFCYAKNK 246



 Score = 41.5 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 207 QKPEALLSRILVSSTKPG--DIILDPFFGSGTSGAVAKKLR 245
            K    + +I++ ST P   DIILD F GSGT+     +  
Sbjct: 384 PKGVEFMKKIILHSTTPNSNDIILDFFAGSGTTAHAVLESN 424


>gi|227515538|ref|ZP_03945587.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus fermentum ATCC 14931]
 gi|227086151|gb|EEI21463.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus fermentum ATCC 14931]
          Length = 643

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 65/194 (33%), Gaps = 18/194 (9%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYR-----PDH 62
           +NQ      K+    G+++ VL  L       ++ IF DPPYN   N   Y       D+
Sbjct: 85  QNQGEGKNSKNLFFTGDNLEVLRHLEVGYLNKINTIFIDPPYNTGSNDFEYPDSFEYSDN 144

Query: 63  SLVDAVTDSWDKF---------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
            + +      ++          SS  A+  F    L+  +R+L   GT+++    +    
Sbjct: 145 KIKEMFGLEDEQVERLKSIQGSSSHSAWLTFMYPRLVLAKRMLSSKGTIFISIDDNEFSN 204

Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY-DALK 172
           +  +   +         +   +             H  ++  +   +   +  +   + +
Sbjct: 205 LKNICDEIFGEANYVDTFIWESRTSISNDSPISLNHNYILVYAKDIQQLQWYGDPLSSRE 264

Query: 173 AANEDVQMRSDWLI 186
             N D   R  W +
Sbjct: 265 YKNPDNDPRGPWKL 278



 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 12/133 (9%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           G+  +     EK     KP +L+ +++  ++K  +I++D F GS T+     +L      
Sbjct: 368 GTNEIIKLFNEKCFSYPKPTSLVKKLIKYTSKDSEIVMDFFAGSATTADAVMQLN----- 422

Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQG 310
                   D A +R   VQ L           +T P     +  + G     +I      
Sbjct: 423 ------AEDTANRRFIMVQ-LPEKTYHRNKDGKTVPVKGAKVAYDAGFKSIDEISRERIR 475

Query: 311 NISATVCADGTLI 323
             +  +  D  L 
Sbjct: 476 RAAKKIRDDNELT 488


>gi|293570789|ref|ZP_06681838.1| gp10 [Enterococcus faecium E980]
 gi|291609142|gb|EFF38415.1| gp10 [Enterococcus faecium E980]
          Length = 188

 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 46/138 (33%), Gaps = 25/138 (18%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           KD I   + +  + ++P  S+D I  D PY                     +WD      
Sbjct: 4   KDTIYFEDCLEGMNRIPDDSIDAIICDLPYGT----------------TACAWD------ 41

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           +   + R W     RV+KP G + + G+    F     + N   +  +      +     
Sbjct: 42  SILPWDRLW-AQYLRVIKPEGAIVLFGA--EPFSTQLRMSNFKDYKYDWYWVNNTATGFE 98

Query: 140 FRGRRFQNAHETLIWASP 157
           F  ++   + ET    S 
Sbjct: 99  FAKKQPMRSVETSSVFSK 116


>gi|261402465|ref|YP_003246689.1| DNA methylase N-4/N-6 domain protein [Methanocaldococcus
          vulcanius M7]
 gi|261369458|gb|ACX72207.1| DNA methylase N-4/N-6 domain protein [Methanocaldococcus
          vulcanius M7]
          Length = 37

 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN 54
          +KI   + +  +++L  KS+D+I   PPYN+ + 
Sbjct: 4  NKIYCMDCLEGMKQLKDKSIDVIITSPPYNISIR 37


>gi|315654977|ref|ZP_07907882.1| adenine specific DNA methylase [Mobiluncus curtisii ATCC 51333]
 gi|315490938|gb|EFU80558.1| adenine specific DNA methylase [Mobiluncus curtisii ATCC 51333]
          Length = 644

 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 71/235 (30%), Gaps = 17/235 (7%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQL 57
           + ++ S   +          + II G+++  L+ L       VD+I+ DPPYN    G +
Sbjct: 24  LERQYSFDTDGQHKVDNGSNNMIIHGDNLEALKSLLPRYDGQVDVIYIDPPYNTGNEGWV 83

Query: 58  YRP-------DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
           Y            L + V    +  S  + +       L   +R+L P G +++    + 
Sbjct: 84  YNDAVNDPQIKKWLGEVVGKEGEDLSRHDKWLCMMYPRLRLLQRLLAPTGAIFISIDDNE 143

Query: 111 IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAH-ETLIWASPSPKAKGYTFNYD 169
              +  +   +                      +   A  E L+  S  P  +       
Sbjct: 144 AANLRLIGNEIFGARCFVADISWQRTYSTRNDSKGIPAEVEHLLVFSKQPDWQPNKLERT 203

Query: 170 ALKAANEDV--QMRSDWLIP--ICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
           A   +        RS W        G+   +       HP      LL   + + 
Sbjct: 204 AEMDSKYKNPDNDRSPWRTDNAFAPGARTHQGMVYAIQHP--FTGELLYPAINNC 256



 Score = 61.9 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 20/129 (15%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIE 252
           DG     T KP  L+ R+L  ++ P  I+LD F GSGT+      L       R FI +E
Sbjct: 376 DGAVAFDTPKPTRLIERVLKVASSPHSIVLDSFAGSGTTAHAVLSLNKKDGGNRQFILVE 435

Query: 253 MKQDYID-IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
           +  DY D +  +R+  V        +V T    E        +   +++ G+ +      
Sbjct: 436 LG-DYADSVTAERVKRVARGYTATKSVKTTLYDEK-------LTTAMLKKGEKVF----- 482

Query: 312 ISATVCADG 320
             A   ADG
Sbjct: 483 AEAKAIADG 491


>gi|238750970|ref|ZP_04612467.1| Site-specific DNA-methyltransferase (Adenine-specific) [Yersinia
           rohdei ATCC 43380]
 gi|238710884|gb|EEQ03105.1| Site-specific DNA-methyltransferase (Adenine-specific) [Yersinia
           rohdei ATCC 43380]
          Length = 625

 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 84/238 (35%), Gaps = 34/238 (14%)

Query: 20  KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN------------------GQLY 58
           K+  I+G+++  L+ L       V +I+ DPPYN   +                  GQ+ 
Sbjct: 98  KNLFIEGDNLDALKLLQETYLGKVKMIYIDPPYNTGRDFIYDDDYSADVEGYQLASGQVN 157

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
           +    LV A T++  ++ S   + +   A L   R +LK +G +++    + +  +  + 
Sbjct: 158 QTGGKLV-ANTEANGRYHS--DWLSMIYARLRLARNLLKDDGVIFMSIDDNEVDNLRKVA 214

Query: 119 QNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF----NYDALKA 173
             +         V  +    P    R F   H+ ++  + +  +         +    + 
Sbjct: 215 SEVFGDENFVAQVIWQKVFSPKNSARWFSEDHDYVLVYAKNGDSWSPNLLPQTDDMIARY 274

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK-----PEALLSRILVSSTKPGDI 226
            N D   R  W     +   R          P+ +     P+    R+  S+ K  D+
Sbjct: 275 KNPDNDPRGVWQSDNLTARNRYDAGLYSVKCPSGRVIEGPPKGSYWRVSESNFKKLDV 332



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 18/79 (22%)

Query: 208 KPEALLSRILVSSTKP--GDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQ---- 255
           KP  LL RIL  +T P   DI+LD F GS T+     K        R FI +++ +    
Sbjct: 397 KPVELLQRILQLATSPSSDDIVLDFFSGSATTAHAVIKQNAEDGGNRRFIAVQIAEPLPT 456

Query: 256 ------DYIDIATKRIASV 268
                    ++  KR+ +V
Sbjct: 457 PEPAMASIFEMGLKRVRNV 475


>gi|319944299|ref|ZP_08018573.1| type III restriction-modification system StyLTI enzyme mod
           [Lautropia mirabilis ATCC 51599]
 gi|319742260|gb|EFV94673.1| type III restriction-modification system StyLTI enzyme mod
           [Lautropia mirabilis ATCC 51599]
          Length = 536

 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 15/157 (9%)

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
            +I  +++      +    ++  E LI+     K K   +        N+ V  ++ W  
Sbjct: 242 EEIWPKRTRVWAYSQEEHQRHVAEGLIYWGKDGKGKVPAYKRYKHSLRNDGVVPQTLWPH 301

Query: 187 PICSGSERLRNKDGEKLHP--------TQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
                ++  R +  E LH         T KP  L+ R+L  +T    +ILD F GSGT+G
Sbjct: 302 EFAGHTDGSRKELREVLHDIPSVSDFATPKPSLLIQRVLQIATDKDSLILDSFAGSGTTG 361

Query: 239 AVAKKLR------RSFIGIEMKQDYI-DIATKRIASV 268
               K        R FI +EM      ++  +RI  V
Sbjct: 362 HAVLKQNAEDGGKRRFILVEMDTGIANNVTRERIKRV 398



 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 62/153 (40%), Gaps = 13/153 (8%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPD-------HSLVDAVTD 70
           + I++G+++  L+ L       V  I+ DPPYN    G +Y  +         L + V  
Sbjct: 39  NLIVQGDNLHALKALLPRYAGQVKCIYIDPPYNTGNEGWVYNDNVNSPEIRKWLGEVVGK 98

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILND 128
             +     + + +     L+  ++ L+ +G +++    + +  +  ++  +      +  
Sbjct: 99  EGETLDRHDRWLSMMYPRLVLLKQFLREDGAIFISIDDNEVATLRLLMDEIFEARNFVGT 158

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
           ++W+K   + N   +     H+ ++    SP  
Sbjct: 159 VIWQKKYAVSN-DHKTIAPMHDFVLVYQRSPSW 190


>gi|125974022|ref|YP_001037932.1| DNA methylase N-4/N-6 [Clostridium thermocellum ATCC 27405]
 gi|281418176|ref|ZP_06249196.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum
           JW20]
 gi|125714247|gb|ABN52739.1| DNA methylase N-4/N-6 [Clostridium thermocellum ATCC 27405]
 gi|281409578|gb|EFB39836.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum
           JW20]
          Length = 329

 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 5/115 (4%)

Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
           T+     S        N  + +  N +++  + W  P          K      P     
Sbjct: 70  TICLEEKSKSYFADKLNIKSWEPENFNLETTTVWSFPDRGDWATHSGKYRGNWSPF---- 125

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
            +   +++  +K G+ +LD F GSGT+   AK L+R  IG+++  + +++  + I
Sbjct: 126 -IPRNVILRYSKEGETVLDQFVGSGTTLVEAKLLKRKGIGVDINPEAVNLTCRNI 179



 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 41/142 (28%), Gaps = 23/142 (16%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS--SFE 79
           ++  G++   L  +  +SVDLI   PPY             +++    D     S     
Sbjct: 190 EVHVGDARH-LGFIKDESVDLICTHPPY------------SNIIKYSEDIEGDLSHCDIN 236

Query: 80  AYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNI-------FRIGTMLQNLNFWILNDIVW 131
            +            RVLK       +IG            F +        F +   ++ 
Sbjct: 237 EFLVEMEKVAKESYRVLKKGRFCAILIGDTRRKGHMIPIGFNVMQTFLRAGFKLKEIVIK 296

Query: 132 RKSNPMPNFRGRRFQNAHETLI 153
            + N       R     +  L+
Sbjct: 297 EQHNCSSTGYWRNQSIKYNFLL 318


>gi|312143391|ref|YP_003994837.1| DNA methylase N-4/N-6 domain protein [Halanaerobium sp.
           'sapolanicus']
 gi|311904042|gb|ADQ14483.1| DNA methylase N-4/N-6 domain protein [Halanaerobium sp.
           'sapolanicus']
          Length = 982

 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 6/76 (7%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIE 252
           + + +  T K   L+ RIL  ++   DI++D F GSGT+G     L       R +I +E
Sbjct: 719 EEDDVFDTPKTLRLIKRILRIASNKNDIVMDFFAGSGTTGHACLDLNEEDDGERKYIQVE 778

Query: 253 MKQDYIDIATKRIASV 268
           +   +      RI  V
Sbjct: 779 LGNYFYTTMLPRIKKV 794



 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 56/172 (32%), Gaps = 20/172 (11%)

Query: 24  IKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           I   +   L  +  K    V  IF DPPYN      +Y+ ++                 +
Sbjct: 465 INSENFQTLNLIMEKYKGKVKAIFIDPPYNTGGEDFVYKDNYQ--------------HSS 510

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--ILNDIVWRKSNPMP 138
           +       L    +++  NG +++    +    +  +   +      +++I+W+K    P
Sbjct: 511 WLTMMENRLKLASKLMANNGVVFISIDDNEHSNLKKLCDEIFGKNNFVSNIIWQKKYS-P 569

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
               R F + H+ ++  + +             +         +D   P  S
Sbjct: 570 QNDARYFSDNHDFILAYAKNKDNWDINLLPRTEEMDERYKNPDNDPRGPWKS 621


>gi|256004638|ref|ZP_05429615.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum DSM
           2360]
 gi|255991373|gb|EEU01478.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum DSM
           2360]
 gi|316941270|gb|ADU75304.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum DSM
           1313]
          Length = 329

 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 5/115 (4%)

Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
           T+     S        N  + +  N +++  + W  P          K      P     
Sbjct: 70  TICLEEKSKSYFADKLNIKSWEPENFNLETTTVWSFPDRGDWATHSGKYRGNWSPF---- 125

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
            +   +++  +K G+ +LD F GSGT+   AK L+R  IG+++  + +++  + I
Sbjct: 126 -IPRNVILRYSKEGETVLDQFVGSGTTLVEAKLLKRKGIGVDINPEAVNLTCRNI 179



 Score = 38.4 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 41/142 (28%), Gaps = 23/142 (16%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS--SFE 79
           ++  G++   L  +  +S+DLI   PPY             +++    D     S     
Sbjct: 190 EVHVGDARH-LGFIKDESIDLICTHPPY------------SNIIKYSEDIEGDLSHCDIN 236

Query: 80  AYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNI-------FRIGTMLQNLNFWILNDIVW 131
            +            RVLK       +IG            F +        F +   ++ 
Sbjct: 237 EFLVEMEKVAKESYRVLKKGRFCAILIGDTRRKGHMIPIGFNVMQTFLRAGFKLKEIVIK 296

Query: 132 RKSNPMPNFRGRRFQNAHETLI 153
            + N       R     +  L+
Sbjct: 297 EQHNCSSTGYWRNQSIKYNFLL 318


>gi|163784466|ref|ZP_02179340.1| type II DNA modification methyltransferase M.TdeIII [Hydrogenivirga
           sp. 128-5-R1-1]
 gi|159880263|gb|EDP73893.1| type II DNA modification methyltransferase M.TdeIII [Hydrogenivirga
           sp. 128-5-R1-1]
          Length = 241

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 2/83 (2%)

Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSSTKPGDIILDPFF 232
            E +    +W +      ER R K   +LHP +      L+   L    K GDI+LDPF 
Sbjct: 72  KEKLGDEINWELSFDWIPERERTKHVHRLHPYKGKFIPQLVEYFLKRYFKEGDIVLDPFV 131

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQ 255
           GSGT+   A ++    IGI++ +
Sbjct: 132 GSGTTLIQANEMNIHSIGIDISE 154


>gi|317013292|gb|ADU83900.1| type III DNA modification enzyme (methyltransferase) [Helicobacter
           pylori Lithuania75]
          Length = 439

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 62/158 (39%), Gaps = 18/158 (11%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHS--------LVDAV 68
           K  +IKG+++  L+ L    ++ + +I+ DPPYN + +  +Y  D S         +D  
Sbjct: 89  KHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNDNFIYGDDFSQSNEEVLKQLDYS 148

Query: 69  TDSWDKFSSF------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL- 121
            +  D   +         + +F    LL  R +LK +G +++    +   ++  +   + 
Sbjct: 149 KEKLDYIKNLFGSKCHSGWLSFMYPRLLLARDLLKQDGVIFISIDDNECAQLKLLCDEIF 208

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
                     RK+    N         HE L+  + + 
Sbjct: 209 GEGNFVADFIRKTKSTTNDAKIGVNYQHEFLLCYAKNK 246



 Score = 41.9 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
            K    +++I+  +T+ GDIILD F GSGT+     +  
Sbjct: 384 PKGVDFMAKIVEHATEKGDIILDFFAGSGTTAHAVLESN 422


>gi|297519367|ref|ZP_06937753.1| putative methyltransferase [Escherichia coli OP50]
          Length = 66

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/33 (60%), Positives = 27/33 (81%)

Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN 54
           II G++++ L+KLP +SVDLIFADPPYN+  N
Sbjct: 16 TIIHGDALAELKKLPTESVDLIFADPPYNIGKN 48


>gi|254900823|ref|ZP_05260747.1| hypothetical protein LmonJ_13446 [Listeria monocytogenes J0161]
          Length = 632

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 61/153 (39%), Gaps = 22/153 (14%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQL------NGQLYRPDHSLVDAVTD- 70
           +  I G+++  L+ L       +D+I+ DPPYN         N +  + ++ L + + D 
Sbjct: 77  NLFITGDNLEALKLLQESYLGKIDMIYIDPPYNTGKDFVYQDNFKKTKKENDLSEGILDE 136

Query: 71  SWDKFSSFE--------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
             D+    E         +       L   R +L  +G ++V    + I  +  +L  + 
Sbjct: 137 EGDRLVKNEKSNGRYHSDWLTMIYPRLKLARNLLSDSGIIFVSIDENEIANLELLLTEIF 196

Query: 123 --FWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
               +   IVW K NP  + +G      HE ++
Sbjct: 197 GENNLAGTIVWDKRNPKGDSKG--VSMQHEYIV 227



 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 6/70 (8%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMK 254
           + +    KP  L+ +++VS+TK  ++ILD F GSGT+     +        R FI   + 
Sbjct: 399 QNIFDNPKPVDLIRQLIVSTTKKNEVILDFFAGSGTTADAVMQTNSEDGGNRKFIVATLD 458

Query: 255 QDYIDIATKR 264
           ++  + +  R
Sbjct: 459 EETPENSEAR 468


>gi|108563818|ref|YP_628134.1| type III R-M system modification enzyme [Helicobacter pylori HPAG1]
 gi|107837591|gb|ABF85460.1| type III R-M system modification enzyme [Helicobacter pylori HPAG1]
          Length = 654

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 68/185 (36%), Gaps = 18/185 (9%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSL--------VDAV 68
           K  +IKG+++  L+ L    ++ + +I+ DPPYN + +  +Y  D S         +D  
Sbjct: 89  KHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNDNFIYSDDFSQSNEETLKTLDYS 148

Query: 69  TDSWDKFSSF------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL- 121
            +  D   +         + +F    LL  + +LK +G +++    +    +  +   + 
Sbjct: 149 KEKLDYIKNLFGSKCHSGWLSFMYPRLLLAKDLLKQDGVIFISIDDNECANLKILCDEIF 208

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
                   + R +        +  +N    L +   S   K    + +     +E    R
Sbjct: 209 GEGNFVAEMPRLTKKAGKSTNQIAKNHDYVLCYQKNSINFKQIDIDENDYSLKDEFYNER 268

Query: 182 SDWLI 186
             + +
Sbjct: 269 GGYKL 273



 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 3/128 (2%)

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
           +  +  W      +  +N     +  R      T    +    +K Y   Y         
Sbjct: 318 IDWVWRWSKAKFDFGLANGFVEVKNNRIYTKTYT---KAKISDSKPYKIEYFNRTKNISS 374

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           ++   +      S  +     + + +    KP  L+S ++  +T+ GDIILD F GSGT+
Sbjct: 375 IEFLDNKYSNDMSNKKLQSIFNVKNIFDYSKPVELISFLIDQTTEKGDIILDFFAGSGTT 434

Query: 238 GAVAKKLR 245
                +  
Sbjct: 435 AHAVLESN 442


>gi|86146749|ref|ZP_01065069.1| Site-specific DNA-methyltransferase (adenine-specific) [Vibrio sp.
           MED222]
 gi|85835399|gb|EAQ53537.1| Site-specific DNA-methyltransferase (adenine-specific) [Vibrio sp.
           MED222]
          Length = 611

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 64/209 (30%), Gaps = 23/209 (11%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           +  I+ +++ VL+ L     KS+ LI+ DPPYN   +       H+ ++       +   
Sbjct: 98  NIFIEADNLEVLKLLQKSYHKSIKLIYIDPPYNTGKDFVYKDNFHNNLNNYFQQTGQLDE 157

Query: 78  ---------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL- 121
                             + +     L   R +L  +G +++         +  +   + 
Sbjct: 158 SGRKLSTNSDTSGRYHSDWLSMMYPRLKLARNLLADDGAIFISIDDGEQSNLKQICDEIF 217

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF----NYDALKAANED 177
                 + +  +    P    +   + H+ ++  + + +                  N D
Sbjct: 218 GEDNFVNNIIWQKKYSPQNDAKWLSDNHDFILCYAKNKELWRPNLLARTEKQNTAYKNPD 277

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPT 206
              R  W     S      N D E   P+
Sbjct: 278 NDPRGVWKATDLSVKTYASNNDYEITTPS 306



 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 14/84 (16%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIE 252
           + +++  T KP +L+SRIL        I+LD F GSGT+     +        R FI ++
Sbjct: 384 ETKEVFDTPKPVSLISRILDIGADKDSIVLDFFAGSGTTAHAVMEKNITDEGTRRFITVQ 443

Query: 253 M-------KQDYI-DIATKRIASV 268
           +         +YI D   +RI   
Sbjct: 444 LPEPTGKKDFEYISDFTYERIHRA 467


>gi|156743531|ref|YP_001433660.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156234859|gb|ABU59642.1| DNA methylase N-4/N-6 domain protein [Roseiflexus castenholzii DSM
           13941]
          Length = 372

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 11/127 (8%)

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFN------YDALKAANEDVQMRSDWLIPICSGSE 193
           F  RR ++A E +  A    +A+ Y              A NE    R      + + S 
Sbjct: 74  FSKRRLRDAFEQIARAYTLERARYYLDRLARAAGESRTGAINEIDLNRWKEYDDVLTDSL 133

Query: 194 RLRNKD--GEKLHPT---QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
            L ++   G   H          +  ++++  T+ GD++LDPF GSGT+   A++L R  
Sbjct: 134 WLFDRRAAGGAHHAGFWGNFVPQIPYQLMLRYTRRGDLVLDPFAGSGTTLIEAQRLGRLA 193

Query: 249 IGIEMKQ 255
           IG+E+  
Sbjct: 194 IGVELNP 200


>gi|165976075|ref|YP_001651668.1| type III restriction-modification system methyltransferase
           [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|165876176|gb|ABY69224.1| type III restriction-modification system methyltransferase
           [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
          Length = 618

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 69/191 (36%), Gaps = 29/191 (15%)

Query: 20  KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN------------------GQLY 58
           ++  I+G+++  L+ L       V +I+ DPPYN   +                  GQ+ 
Sbjct: 97  QNLFIEGDNLEALKLLQETYLGKVKMIYIDPPYNTGKDFIYKDNFAMANEDYQRESGQVD 156

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
              + LV   ++S  +F S   + +   + L   R +L  +G +++    +    +  + 
Sbjct: 157 EEGNRLV-VNSESNGRFHS--DWLSMIYSRLKLARNLLTDDGVIFISIDDNEQANLKRVC 213

Query: 119 QNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA----KGYTFNYDALKA 173
             +         V  K   +     R F   HE LI  + + +     +    +    + 
Sbjct: 214 DEVFGERNFVADVIWKKKNVVQNDARFFSTDHEYLICYTKNSEYLTLNRLPRTDEQKSRY 273

Query: 174 ANEDVQMRSDW 184
            N D   R DW
Sbjct: 274 QNPDNDPRGDW 284



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 20/112 (17%)

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
           +    +D +    S  E ++      +  T KP   + +++  +     IILD F GS T
Sbjct: 358 NTIWFNDEVGSTQSSKEMVKKLLNSNIFDTPKPIEYIKKMMRLTCNNNSIILDFFAGSAT 417

Query: 237 SGAVAKKL------RRSFIGI-------EMKQDY-------IDIATKRIASV 268
           +     +L       R FI +       E  + +        +I+ +RI   
Sbjct: 418 TAHAVMQLNAEDGGNRKFIMVQIPEQTDEKSEAHKAGYHTIAEISKERIRRA 469


>gi|158313294|ref|YP_001505802.1| putative RNA methylase [Frankia sp. EAN1pec]
 gi|158108699|gb|ABW10896.1| putative RNA methylase [Frankia sp. EAN1pec]
          Length = 463

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           + I S SERL      +  P +    +   ++ + ++PGD++LDPF GSGT  A A ++R
Sbjct: 37  LDISSDSERLLVHSLFR-FPAKFHPPVAQALIRNFSEPGDLVLDPFCGSGTLLAEAARMR 95

Query: 246 RSFIGIEMKQDYIDIA 261
           R  IG ++    + ++
Sbjct: 96  RRSIGTDVDPVAVSVS 111


>gi|225351893|ref|ZP_03742916.1| hypothetical protein BIFPSEUDO_03497 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157140|gb|EEG70479.1| hypothetical protein BIFPSEUDO_03497 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 369

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 12/108 (11%)

Query: 174 ANEDVQMRSDWLIPICSGSERLRN------------KDGEKLHPTQKPEALLSRILVSST 221
            N    + + W  P     ERL+                   H  QKP   + R + +++
Sbjct: 243 WNHVNGLTNVWSRPPLHDGERLKGTLQRSAPRVYKPSKQSAAHLNQKPLDFMDRQIHAAS 302

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
             GD++ +PF G  ++   A    R     E+ +++ ++A  R+A  +
Sbjct: 303 NKGDVVWEPFGGLASASVAAVLTGRIAYTAEIDEEFQNLALGRLAEAE 350


>gi|229584951|ref|YP_002843453.1| hypothetical protein M1627_1525 [Sulfolobus islandicus M.16.27]
 gi|238620054|ref|YP_002914880.1| hypothetical protein M164_1611 [Sulfolobus islandicus M.16.4]
 gi|228020001|gb|ACP55408.1| hypothetical protein M1627_1525 [Sulfolobus islandicus M.16.27]
 gi|238381124|gb|ACR42212.1| hypothetical protein M164_1611 [Sulfolobus islandicus M.16.4]
          Length = 55

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 28/41 (68%)

Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQL 57
           ++ DK+I G+S+ +L+++P  S++LI   PPY  Q + ++
Sbjct: 11 EKFLDKLIVGDSLKLLKEIPDNSINLIITSPPYFQQRDYEV 51


>gi|165911275|gb|ABY74328.1| methyltransferase [Neisseria meningitidis]
          Length = 543

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 56/148 (37%), Gaps = 20/148 (13%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       V LI+ DPPYN   +G  Y              DKF +
Sbjct: 105 NLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTGNDGFKY-------------NDKF-N 150

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSN 135
              +  F +  L   + +L  +G++W+  +   +     +   +      + +I+W    
Sbjct: 151 HSTWLTFMKNRLEIAKTLLADDGSIWISLNDDEVHYAKVLCDEILGRDNFIANIIWHSKY 210

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKG 163
              N   +     HE +++ +       
Sbjct: 211 TTSN-DAKFISYQHENILFYAKDKSKFK 237


>gi|172035872|ref|YP_001802373.1| putative DNA-methyltransferase [Cyanothece sp. ATCC 51142]
 gi|171697326|gb|ACB50307.1| putative DNA-methyltransferase [Cyanothece sp. ATCC 51142]
          Length = 91

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 13/97 (13%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
            +G+ + ++    + S+DLIFADPP+NL         D  +                Y +
Sbjct: 2   YQGDCLDLMFHTASDSIDLIFADPPFNLSKIYPSKINDQLM-------------DRDYLS 48

Query: 84  FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           +   WL  C R+LKP G+L++         +   L  
Sbjct: 49  WCETWLKDCIRILKPGGSLFLWNLPKWNTYLSQFLNQ 85


>gi|332974814|gb|EGK11729.1| type III restriction-modification system methyltransferase
           [Psychrobacter sp. 1501(2011)]
          Length = 629

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 76/217 (35%), Gaps = 34/217 (15%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPD---------------- 61
           +  I+G+++  L+ L       V +I+ DPPYN   N  +Y  D                
Sbjct: 102 NLFIEGDNLEALKLLQESYLGQVKMIYIDPPYNTG-NDFIYEDDFAEDTSDFLQRSEQVD 160

Query: 62  --HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
              + +   T+S  +F S   +     + L   R +LK +G +++    +    +  +  
Sbjct: 161 EEGNRLVTNTESNGRFHS--DWLTMMYSRLKLARNLLKDDGLIFISCDANEQANLKKIGD 218

Query: 120 NLNFW--ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK----- 172
            +  +    +DI WR+ +  PN + +      E ++  + +         Y  L      
Sbjct: 219 EIFGYQNFESDIHWRRRHNQPNDKSKIIARVSENILVYAKNSIILKERGTYYGLPLSEKR 278

Query: 173 ---AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
                N D   + DW       +        E + PT
Sbjct: 279 VADYKNPDNDPKGDWTTNPWKAATGRGGTTYEIITPT 315



 Score = 55.4 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 6/59 (10%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
           L    KP  L+S ++  +TK  D+ILD F GSGT+     ++       R FI I++ +
Sbjct: 393 LFSNPKPTKLISSLIKIATKEDDLILDFFAGSGTTADSTLQMNIEDSMRRKFILIQLDE 451


>gi|308185292|ref|YP_003929425.1| type III R-M system modification enzyme [Helicobacter pylori
           SJM180]
 gi|308061212|gb|ADO03108.1| type III R-M system modification enzyme [Helicobacter pylori
           SJM180]
          Length = 459

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 68/185 (36%), Gaps = 18/185 (9%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSL--------VDAV 68
           K  +IKG+++  L+ L    ++ + +I+ DPPYN + +  +Y  D S         +D  
Sbjct: 89  KHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNDNFIYGDDFSQSNEEILKTLDYS 148

Query: 69  TDSWD------KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL- 121
            +  D         S   + +F    LL  + +LK +G +++    +   ++  +   + 
Sbjct: 149 KEKLDYIKNLFGLKSHSGWLSFMYPRLLLAKDLLKQDGVIFISIDDNEAAQLKLLCDEIF 208

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
                   + R          +  +N    L +   S   K    + +     +E    R
Sbjct: 209 GERNFVAEMPRLVKRAGKSTNQIAKNHDYVLCYQKNSINFKQIDIDENDYPFKDEFYNER 268

Query: 182 SDWLI 186
             + +
Sbjct: 269 GGYRL 273



 Score = 56.9 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 75/195 (38%), Gaps = 8/195 (4%)

Query: 56  QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI- 114
            +   D+   D   +    +   +A D+ T  ++ +   +++ NG  ++ G      R+ 
Sbjct: 252 DIDENDYPFKDEFYNERGGYRLNQALDSNTLGYVKSLDYIIEINGKKYIAGGLTEYQRLQ 311

Query: 115 ---GTMLQNLNF-WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
              G +  N  + W      +  +N     +  R      T    S S   K   FN   
Sbjct: 312 KVNGRLADNFRWRWSKAKFDFGLANGFVEVKNNRIYTKTYTKAKISDSKPYKIEYFNRTK 371

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
              + + +  +    +    G ++L N+    +    KP  L+S ++  +T+ GDIILD 
Sbjct: 372 NILSVDFIDHKYSNDM-ATKGLQKLFNE--RNIFDYSKPVELISFLIDQTTEKGDIILDF 428

Query: 231 FFGSGTSGAVAKKLR 245
           F GSGT+     +  
Sbjct: 429 FAGSGTTAHAVLESN 443


>gi|315506723|ref|YP_004085610.1| DNA methylase n-4/n-6 domain protein [Micromonospora sp. L5]
 gi|315413342|gb|ADU11459.1| DNA methylase N-4/N-6 domain protein [Micromonospora sp. L5]
          Length = 280

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 204 HPTQK-PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           HP +  P A  +  + + ++PGD++ DP  G GT+   A  L R  +GI+++  Y  IA 
Sbjct: 33  HPAKMLPHA-AAHAIATYSRPGDLVFDPMCGVGTTLVEAMHLGRHGLGIDIEPRYTAIAE 91

Query: 263 KRIA 266
             IA
Sbjct: 92  ANIA 95



 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 9/94 (9%)

Query: 22  KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           ++  G++  +L+ +PA     V L+   PPY    +G +      +        D+ S  
Sbjct: 107 RVFTGDATGLLDLVPATIVGQVSLVLTSPPYGRGTHGLVQTTSAGVRKRHHHYGDRHSGN 166

Query: 79  EAYDAFTR------AWLLACRRVLKPNGTLWVIG 106
            AY  ++R      A L A  ++L+P G + +  
Sbjct: 167 LAYGGWSRLLDGFAAILAASYQLLRPGGIVVITC 200


>gi|257075872|ref|ZP_05570233.1| DNA methylase N-4/N-6 [Ferroplasma acidarmanus fer1]
          Length = 286

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 3/84 (3%)

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
           + W  P              + +       L   I++  +K  D+ILDPF GSGT+   A
Sbjct: 50  NVWSFPERGKWCTHYLNAKYRGNYAP---QLPRNIILRYSKENDLILDPFSGSGTTLIEA 106

Query: 242 KKLRRSFIGIEMKQDYIDIATKRI 265
           K L+R  IG+++      I   R+
Sbjct: 107 KLLKRHGIGMDINLGSAMITMDRL 130



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 59/172 (34%), Gaps = 25/172 (14%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           M   + L  N ++N++ E   +I  G++ + L ++  +S+DLI   PPY           
Sbjct: 124 MITMDRLNFNNSENNLIE--PEIFNGDARN-LNEIEDESIDLIMTHPPY-------ANII 173

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNI-------F 112
            +S  + + D      S E Y    +  +    R LK       +IG            F
Sbjct: 174 KYSKDNIIKDDLSSIESLEEYYKKFKKVIKEMHRTLKKGKYCAILIGDTRKKGYQIPISF 233

Query: 113 RIGTMLQNLNFWILNDIV-------WRKSNPMPNFRGRRFQNAHETLIWASP 157
            I  +     F +  DI+        R      + +      A+E L     
Sbjct: 234 TIMQLFLKEGFVLKEDIIKVQHNTKTRHYWASLSIKNNFMLLAYEHLFVFKK 285


>gi|77166378|ref|YP_344903.1| site-specific DNA-methyltransferase (adenine-specific)
           [Nitrosococcus oceani ATCC 19707]
 gi|254435186|ref|ZP_05048693.1| DNA methylase domain protein [Nitrosococcus oceani AFC27]
 gi|76884692|gb|ABA59373.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nitrosococcus oceani ATCC 19707]
 gi|207088297|gb|EDZ65569.1| DNA methylase domain protein [Nitrosococcus oceani AFC27]
          Length = 624

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 68/202 (33%), Gaps = 20/202 (9%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLN-------GQLYRPDHSLVDAVT 69
           K+  I+G+++ VL+ L    A  V +I+ DPPYN            +           V 
Sbjct: 93  KNLFIEGDNLEVLKLLQKSYANKVKMIYIDPPYNTGKEFIYPDKFQENLDTYLKYTGQVD 152

Query: 70  DSWDKFSSFEA--------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
           D   KFSS           + +     L   +++L   G +++    + +  +  +   +
Sbjct: 153 DEGMKFSSNTESTGRKHTNWLSMMYPRLKLAKQLLSQEGVIFITIDDNEVATLRQVCDEI 212

Query: 122 -NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
                    +  +    P+     F + H+ ++  + +       F     +    +   
Sbjct: 213 FGEENFVTSIVWQKKVSPSNDATWFSSDHDHILVYAKNKLIW-RPFKLPMNERQKSNYTN 271

Query: 181 RSDWLIPICSGSERLRNKDGEK 202
             +      + +    NKD ++
Sbjct: 272 PDNDPRGNWNSATYTCNKDSDE 293



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 22/144 (15%)

Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL- 203
            ++A E +I+      +           +  + V  R+ WL      ++       E + 
Sbjct: 326 QKHAEENIIYWGKDGTSNS--PRLKKFLSKAKGVVPRTVWLYSDVGHTQEATKVLSELID 383

Query: 204 ---HPTQKPEALLSRILVSST--KPGDIILDPFFGSGTSGAVAKKL------RRSFIGIE 252
                T KP  L+  +L  ST     +I+LD F GS ++      +       R FI ++
Sbjct: 384 DIKFDTPKPVRLIEHMLRISTGGDSEEIVLDFFAGSASTAHAILNINANEGSNRRFIMVQ 443

Query: 253 M-----KQDY---IDIATKRIASV 268
           +      + Y    DI  +R+   
Sbjct: 444 LPELLESESYRSIADIGKRRVKEA 467


>gi|313898471|ref|ZP_07832008.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. HGF2]
 gi|312956853|gb|EFR38484.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. HGF2]
          Length = 956

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 82/243 (33%), Gaps = 15/243 (6%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           + +  +  L  ++  L++ADPPY         R  H L       +   +        + 
Sbjct: 276 DCLDSV-SLNNET--LVYADPPYF---KEHYSRYYHVLNTVCLYDYPAMAMNPQTHELSI 329

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL----NDIVWRKSNPMPNFRG 142
                 R V         +G++     + T   N   W++    ++ +   S+       
Sbjct: 330 GRYREDRSVSDFGKKAKALGAFDT---LITKCSNAGAWLMISYSDNSIVDISDIQALAEK 386

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R      +  +  S   ++     +        +++    D  + +    + + +     
Sbjct: 387 RYDVLIEKVELSHSKQGRSSISKVDEYIFICRPKEIVHDVDEKLSVIKELKPIVDNPAGF 446

Query: 203 LHP--TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +H    +KP  ++S I+      G  + DP FGSGT+   A KL R  IG ++      +
Sbjct: 447 MHNYMARKPYNVVSEIIKRFCPDGGCVYDPMFGSGTTIIEASKLGRKAIGTDINLLAYKL 506

Query: 261 ATK 263
              
Sbjct: 507 CKA 509



 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 41/115 (35%), Gaps = 17/115 (14%)

Query: 32  LEKLPAKSVDLIFADPPY------------NLQLNGQLYRPDHSLVD--AVTDSWDKFSS 77
           L+ LP ++VDLI  DPPY              ++ G     D SL     V+D+  +   
Sbjct: 731 LDLLPNEAVDLILTDPPYTDQVPYLEYNQLWYKVMGWSGFTDESLGSELVVSDAPSRNKD 790

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIG---SYHNIFRIGTMLQNLNFWILNDI 129
            E ++    A L      LK NG   +        +   I  M+Q         I
Sbjct: 791 AEDFNNIFAAILKRISPALKMNGYFIMFYHSFDLKSWSEILKMMQEYGLAYCGQI 845


>gi|251772879|gb|EES53438.1| putative DNA methylase N-4/N-6 [Leptospirillum ferrodiazotrophum]
          Length = 413

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 56/165 (33%), Gaps = 11/165 (6%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           +  ++ G+++  L+ L     + V +I+ DPPYN   NG LY   +    +     D+ +
Sbjct: 38  RHTLVCGDNLDALKLLLPSLERKVRVIYIDPPYNTG-NGLLY---NDRFGSWGRDGDRHA 93

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSN 135
              A+ +     LL   R L+ +G  +       + R+  +   +     L   V  +  
Sbjct: 94  ---AWLSMMAPRLLLAWRFLRDDGVFFASIDDRELPRLRLLCDEVFGEDNLVSTVIWRKK 150

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
            +     R      E ++  +    A              E    
Sbjct: 151 VVRGRGNRHILPQTEYILAYARDINALPPFHENLTPGMKKEYAHH 195



 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 18/157 (11%)

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL--IP 187
           +   ++     R    +  +E L+  +   +   YT  Y       E  +    +   + 
Sbjct: 231 IPCPTHQWRWSRETVERRKNEILMEKNRKGRWTVYTKQYLRSPEGEERKRTPESYYDRVT 290

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKP--GDIILDPFFGSGTSGAVAKKLR 245
              G+  ++   GE +    KP  L+  ++  +T     D ++D F GSG++G    +L 
Sbjct: 291 TSDGTAEMKELFGEVILDFPKPSRLIRDLISWATPRGSSDPVMDFFAGSGSTGQAVLELN 350

Query: 246 ------RSFIGIEMK-----QDY---IDIATKRIASV 268
                 R F  ++        ++    +I   R+  V
Sbjct: 351 AQDGGSRPFYLVQSDDPIVHPEFRSIYEICRGRVERV 387


>gi|238021173|ref|ZP_04601599.1| hypothetical protein GCWU000324_01071 [Kingella oralis ATCC 51147]
 gi|237868153|gb|EEP69159.1| hypothetical protein GCWU000324_01071 [Kingella oralis ATCC 51147]
          Length = 629

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 65/167 (38%), Gaps = 21/167 (12%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLV----------- 65
           ++ ++KG+++ +L+ L    A +V +I+ DPPYN   +G +Y+ D               
Sbjct: 94  QNLLLKGDNLEILKHLKHAYAGAVKMIYIDPPYNTGSDGFVYQDDRRFTPEQLARLGGMD 153

Query: 66  -----DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
                  +  +  K +S  A+  F    L   R +L+ +G +++    +   ++  +   
Sbjct: 154 LDEACRVLEFTAKKSNSHSAWLTFMYPRLYIARELLREDGVIFISIDDNEQAQLKILCDE 213

Query: 121 LN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
           +      ++  + R      +   +    A   L++A        + 
Sbjct: 214 VFGEENFVSTAIRRAKVGGGSDNKQFATEADYLLVYAKNKNMLNTFY 260



 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 50/137 (36%), Gaps = 34/137 (24%)

Query: 191 GSERLRNKDGEK-LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR---- 245
           G+E L N   +K +    K    +  ++   T+  D+ILD F GSGT+      +     
Sbjct: 370 GTEELANLFKQKNIFKYPKYTGFIEFLIEICTQKDDLILDFFAGSGTTAHAVMNINANYP 429

Query: 246 ---RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPG 302
              R +I I++                        +L+ K+ E + A+N     G     
Sbjct: 430 YKLRKYICIQI----------------------ADILSAKKKEHKAAYN----AGYRTIF 463

Query: 303 QILTNAQGNISATVCAD 319
           QI        +A + AD
Sbjct: 464 QITQARLEKAAAKIRAD 480


>gi|195867571|ref|ZP_03079574.1| adenine specific DNA methyltransferase [Ureaplasma urealyticum
           serovar 9 str. ATCC 33175]
 gi|195660815|gb|EDX54069.1| adenine specific DNA methyltransferase [Ureaplasma urealyticum
           serovar 9 str. ATCC 33175]
          Length = 433

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 74/248 (29%), Gaps = 19/248 (7%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKL-----------PAKSVDLIFADPPYN 50
             +    +N+  N      + +I G +  VL+ L                D+I+ DPPYN
Sbjct: 73  KNEQLSFMNDAHNLFKNDTNSLIIGENYDVLKNLLVLERERETSGRDAYYDVIYIDPPYN 132

Query: 51  L---QLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
               + +G  +     +V +     DKF S   +       L   + +LK +G ++V   
Sbjct: 133 TEASKTDGNNFSEKDDVVASKFVYRDKF-SRNGWLNMMNERLKLAKNLLKNDGVIFVSID 191

Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
            +    +  ++  +         +           +     HE ++  S +      +  
Sbjct: 192 DNEQAYLKVLMDEIFGEENFVTNFIWQKKSGGGLNKLIYEGHEYILCYSKNNYNFCLSEK 251

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGD- 225
              +    +     ++              K   K  H  +  E L            D 
Sbjct: 252 NKKMSGFIKYKDKNNNSFFINSDIIRNNFGKKDNKFEHRNKAYEDLSKEDKEKWNLKLDN 311

Query: 226 --IILDPF 231
              IL PF
Sbjct: 312 KNYILVPF 319


>gi|308451426|ref|XP_003088667.1| hypothetical protein CRE_21673 [Caenorhabditis remanei]
 gi|308246197|gb|EFO90149.1| hypothetical protein CRE_21673 [Caenorhabditis remanei]
          Length = 1156

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 12/77 (15%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM---- 253
             T KP  L+++++     P  I+LDPF GSGT+G     L       R FI IE     
Sbjct: 273 FETVKPMKLITKLIQIWCPPNGIVLDPFAGSGTTGHAVLHLNHEQGSERRFILIEQGRPE 332

Query: 254 --KQDYIDIATKRIASV 268
                   +   R+  V
Sbjct: 333 NGDSYAKTLTVDRLRRV 349


>gi|288819197|ref|YP_003433545.1| DNA methylase [Hydrogenobacter thermophilus TK-6]
 gi|288788597|dbj|BAI70344.1| DNA methylase [Hydrogenobacter thermophilus TK-6]
 gi|308752779|gb|ADO46262.1| DNA methylase N-4/N-6 domain protein [Hydrogenobacter thermophilus
           TK-6]
          Length = 293

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 5/101 (4%)

Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
           T++  +        +  + W  P        +        P      +   +++  T  G
Sbjct: 31  TWSIKSYGPKEYFPEKTTVWSFPNRGSWATHKGNYRGNWSPY-----VPRNLILKYTNKG 85

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           D +LD   GSGT+   AK L R+ IG+++  D + +A  R+
Sbjct: 86  DWVLDQMMGSGTTLVEAKLLERNAIGVDINLDAVMVALDRL 126



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 71/189 (37%), Gaps = 34/189 (17%)

Query: 1   MSQKNSLAINENQNSIFEWKDKI-----------IKGNSISVLEKLPAKSVDLIFADPPY 49
           + ++N++ ++ N +++    D++             G++ + L+K+ ++S+DLI   PPY
Sbjct: 104 LLERNAIGVDINLDAVMVALDRLNFPYGQSTIKTYWGDARN-LDKIESQSIDLIATHPPY 162

Query: 50  NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGSY 108
               N   Y  +  L D ++       S E Y    R       RVLKP      +IG  
Sbjct: 163 ---ANMISYTKNKKLSDDLS-----LLSPEEYLKEMRKVAEESYRVLKPGKVCAILIGDT 214

Query: 109 HNI-------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN------AHETLIWA 155
                     FR+  +     F +  DI+  +          R +       AHE +   
Sbjct: 215 RKYKHYVPIAFRVMQVFLEAGFILREDIIKLQWKMKATREKWRAKEYDFYLIAHEHIFVF 274

Query: 156 SPSPKAKGY 164
               K + Y
Sbjct: 275 RKPEKEEEY 283


>gi|19552128|ref|NP_600130.1| adenine specific DNA methylase Mod [Corynebacterium glutamicum ATCC
           13032]
 gi|62389793|ref|YP_225195.1| restriction-modification system: methylase [Corynebacterium
           glutamicum ATCC 13032]
 gi|41325128|emb|CAF19609.1| PUTATIVE RESTRICTION-MODIFICATION SYSTEM: METHYLASE
           [Corynebacterium glutamicum ATCC 13032]
          Length = 385

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 61/171 (35%), Gaps = 11/171 (6%)

Query: 38  KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK 97
            S+D I+ DPPYN       Y  D+   D      D +   + + AF    L  CR +++
Sbjct: 160 HSIDAIYIDPPYNTGARDWKYDNDYVASD------DDYRHSK-WLAFMERRLKICRELMR 212

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
            + TL      H + R+G +L  L       +V   +NP    +G       E   +   
Sbjct: 213 SDATLVATIDEHEVNRLGVLLDQLFPESTRQLVTIVNNPKGVTQG-YLSRVEEYAFFVFG 271

Query: 158 SPKAKGYTFN---YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
                G   +        A  E    R  W   + SG + LR    +  +P
Sbjct: 272 PDARIGSVDDDLLTHRDMADAEGELQRPRWKGLLRSGDDSLRADRKDMFYP 322


>gi|162455583|ref|YP_001617950.1| hypothetical protein sce7301 [Sorangium cellulosum 'So ce 56']
 gi|161166165|emb|CAN97470.1| hypothetical protein predicted by Glimmer/Critica [Sorangium
           cellulosum 'So ce 56']
          Length = 433

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 36/74 (48%)

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           +  G   +P +       R++   ++PG+ +LDPF GSGT    A+   R+ IG++    
Sbjct: 71  HVHGFHSYPARMHPDTARRLIEGLSRPGERVLDPFCGSGTVLVEARLAGRAAIGVDANPL 130

Query: 257 YIDIATKRIASVQP 270
            + +A  ++    P
Sbjct: 131 AVRLARLKVQGSTP 144



 Score = 37.3 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNG 55
           G++  VL  + A SV L    PPY    + 
Sbjct: 278 GDAR-VLRGVEAGSVHLAITSPPYPGVYDY 306


>gi|150020209|ref|YP_001305563.1| putative RNA methylase [Thermosipho melanesiensis BI429]
 gi|149792730|gb|ABR30178.1| putative RNA methylase [Thermosipho melanesiensis BI429]
          Length = 259

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 36/78 (46%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           + S  +R + K     +       +   +++  +   + ILDP  GSGT+   AK L R 
Sbjct: 12  VWSFPKRGKWKTHNSRYRGNFAPQIPRNVILRYSNESETILDPMVGSGTTLIEAKILNRK 71

Query: 248 FIGIEMKQDYIDIATKRI 265
            IG ++  + I++  + +
Sbjct: 72  SIGYDINPESIELTKRNL 89



 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 49/151 (32%), Gaps = 5/151 (3%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
           +N   N  +E   KI  G++ ++ E +  +++DLI   PPY L +           +  +
Sbjct: 89  LNFEGNYKYEPAVKI--GDARNLYE-IKNETIDLIITHPPY-LNIIKYSSGKIKQDLSNI 144

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY-HNIFRIGTMLQNLNFWILN 127
           +D       FE         L   +      G     G Y    F +  +     F +  
Sbjct: 145 SDVNKFILEFEKIVKELYRVLKENKYCAILIGDTRRKGHYIPLSFYVMKIFLKNRFVLKE 204

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
           DI+  + N        +    +   +     
Sbjct: 205 DIIKIQHNCQSTPFWEKQVKKYNFYLIMHEH 235


>gi|296117835|ref|ZP_06836418.1| DNA (cytosine-5-)-methyltransferase [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295969066|gb|EFG82308.1| DNA (cytosine-5-)-methyltransferase [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 373

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 60/166 (36%), Gaps = 6/166 (3%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + +  G+++ VL+ L      SVD+I+ DPPYN   +  LYR ++        + D    
Sbjct: 3   NALYAGDNLDVLKSLREITPASVDVIYIDPPYNTGRD-FLYRDNYRNRREHKST-DHGQW 60

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNP 136
              + +     L     +L P G +++      + ++  +   L       +    K   
Sbjct: 61  HAQWLSMMAPRLQLAWELLAPTGHIFISIGEDEVAQLRMLTDELFGQSNFANQFIWKKGG 120

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
                 R     HE ++  + S ++ G+  +         + +   
Sbjct: 121 TGKNDSRFAVAEHEYVVAYARSAESPGFNIDPQGYTTTKYNFRDDH 166



 Score = 43.4 bits (101), Expect = 0.060,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 18/43 (41%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +    KP  L+  ++         +LD F GSGT+     +L 
Sbjct: 272 IFDFPKPVQLIKYLVGIGGPDNARVLDFFAGSGTTAQAVAELN 314


>gi|197286959|ref|YP_002152831.1| DNA modification methyltransferase [Proteus mirabilis HI4320]
 gi|194684446|emb|CAR46179.1| DNA modification methyltransferase [Proteus mirabilis HI4320]
          Length = 511

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 203 LHP--TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +HP   +KP  +   ++   + PGD+++DPF GSGTS   A KL R  IG ++  
Sbjct: 25  IHPYWARKPINITELLVEKLSNPGDLVVDPFMGSGTSLIAALKLNRRTIGSDLSP 79



 Score = 40.0 bits (92), Expect = 0.70,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 13/100 (13%)

Query: 35  LPAKSVDLIFADPPYNLQ-------------LNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           L   +VDLI  DPPY                ++    +         T++  +      Y
Sbjct: 316 LEDSTVDLIITDPPYADHAPYLEYSDFYWSIIDETRTKDLWKFEIVKTNAVGRNIDSNDY 375

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
           D        +  + LK +G         NI    T+ +++
Sbjct: 376 DIRMMNSFKSILKGLKDDGYFAFFYLDKNIKHWKTIKRSI 415


>gi|254436859|ref|ZP_05050353.1| DNA methylase [Octadecabacter antarcticus 307]
 gi|198252305|gb|EDY76619.1| DNA methylase [Octadecabacter antarcticus 307]
          Length = 279

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 61/155 (39%), Gaps = 11/155 (7%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPD------HSLVDAVTDS 71
           + II+G+++  L+ L       VD IF D PYN    G  Y  +         +++    
Sbjct: 40  NLIIQGDNLKALKALMPMYAGKVDCIFIDLPYNTGNEGWAYNDNVNAPMIKEWLESNPIG 99

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDI 129
            +     + + A     L     +L  NG+LWV    +    +  +L  +      + +I
Sbjct: 100 IEDGLRHDKWYAMMWPRLKLLHELLDENGSLWVTIDDNEDHLLRQLLDEIFGRDGYITEI 159

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
            WR S+   N   +  Q+ +  L+++     A  +
Sbjct: 160 AWRHSDNSSNNVTQFSQDFNTVLVYSKNEYWAPNF 194


>gi|149194672|ref|ZP_01871767.1| hypothetical protein CMTB2_04807 [Caminibacter mediatlanticus TB-2]
 gi|149135095|gb|EDM23576.1| hypothetical protein CMTB2_04807 [Caminibacter mediatlanticus TB-2]
          Length = 683

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 60/130 (46%), Gaps = 23/130 (17%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKL---PAKSVDLIFADPPYNLQLNGQLYRPDHS---- 63
           +N+NS    ++ +IKG+++ VL+ L       + +I+ DPPYN + N  +Y+ D      
Sbjct: 84  QNKNS----ENLLIKGDNLEVLKHLVNAYENEIKMIYIDPPYNTENNDFVYQDDRKFTPE 139

Query: 64  -----------LVDAVTDSWD-KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
                          + D  D K +S  A+  F    L   RR+L+ +G +++    + I
Sbjct: 140 ELSKLAGIDIEKAKRILDFLDSKSNSHSAWLTFMYPRLYIARRLLRKDGVIFISIDDNEI 199

Query: 112 FRIGTMLQNL 121
            ++  ++  +
Sbjct: 200 AQLKILMDEI 209



 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 56/158 (35%), Gaps = 25/158 (15%)

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS-- 190
                P   G  ++ + + + W   +             K   +  Q   +   PI    
Sbjct: 306 YPGGTPENNGWCWRWSKDKVEWGIKNDFIVFKKDKAGNWKVYFKQYQFVDNDNKPIKRTL 365

Query: 191 --------------GSERLRNKDGEKLHPTQKPEALLSRILVSSTKP--GDIILDPFFGS 234
                         GS+ +     +K+    KP  L+  ++   + P   DIILD F GS
Sbjct: 366 PFKTLLLENYNNEIGSKEILELFSKKIFSYPKPTTLIKFLINLVSNPDNNDIILDFFAGS 425

Query: 235 GTSGAVAKKLR------RSFIGIEMKQDYIDIATKRIA 266
           GT+G    +L       R FI +++  + ID    R+A
Sbjct: 426 GTTGDAVMQLNVENGVDRKFILVQL-PEPIDSKKNRVA 462


>gi|256395961|ref|YP_003117525.1| RNA methylase [Catenulispora acidiphila DSM 44928]
 gi|256362187|gb|ACU75684.1| putative RNA methylase [Catenulispora acidiphila DSM 44928]
          Length = 305

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 39/74 (52%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
              + HP +   A+ +  + S T+PGD+++DP  G GT+   A  L R  IG+E ++ + 
Sbjct: 33  QESEAHPAKMFPAIAAHAIASYTRPGDLVVDPMCGIGTTLVEAMHLDRMAIGVEYEKRWA 92

Query: 259 DIATKRIASVQPLG 272
           D+A + +      G
Sbjct: 93  DLAVRNVEHAVDQG 106


>gi|297161974|gb|ADI11686.1| putative RNA methylase [Streptomyces bingchenggensis BCW-1]
          Length = 317

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 38/81 (46%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G   HP +   A+ +  + + T+PGD++LDP  G GT+   A  L R   G E +  + +
Sbjct: 26  GSADHPAKMLPAIAAHAIRTYTQPGDLVLDPMCGIGTTLVEAVHLGRHAFGTEYEPKWAN 85

Query: 260 IATKRIASVQPLGNIELTVLT 280
           +A   +A     G      +T
Sbjct: 86  MARTNLALAARQGATGKAAVT 106



 Score = 39.6 bits (91), Expect = 0.77,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 14/92 (15%)

Query: 25  KGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS----- 76
             ++  +L  +P +   +  L+   PPY   ++GQ+     +    V  +  ++S     
Sbjct: 107 CTDARHLLTHIPPERHGTAALVITSPPYGPSVHGQVRSTRETGERGVVKNHYRYSRDPHN 166

Query: 77  -----SFEAYDAFTRAWLLACRRVLKPNGTLW 103
                + +  DAFT   L  CR +L+P GT  
Sbjct: 167 LAHVATDQLLDAFTH-ILTQCRTMLRPGGTAV 197


>gi|225390494|ref|ZP_03760218.1| hypothetical protein CLOSTASPAR_04249 [Clostridium asparagiforme
           DSM 15981]
 gi|225043445|gb|EEG53691.1| hypothetical protein CLOSTASPAR_04249 [Clostridium asparagiforme
           DSM 15981]
          Length = 174

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           LDPF GSGT+   AK L R+++GI+     + +  +R+ 
Sbjct: 2   LDPFCGSGTTLVAAKLLGRNYVGIDRNPSAVRLCGQRLE 40


>gi|156741917|ref|YP_001432046.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156233245|gb|ABU58028.1| DNA methylase N-4/N-6 domain protein [Roseiflexus castenholzii DSM
           13941]
          Length = 375

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 6/99 (6%)

Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
               +D+   S WLI     S  +           Q P  ++ R     TK GD +LD F
Sbjct: 125 WKEYDDIYTDSLWLIDRRDSS-GVHTAGYWGNFVPQIPYQMMRR----YTKKGDWVLDTF 179

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
            GSGT+    ++L R+ IG+E++   ++ A +R+ S +P
Sbjct: 180 AGSGTTLIEGQRLGRNTIGVELQPQMVEHA-RRLISSEP 217


>gi|222153319|ref|YP_002562496.1| modification methylase [Streptococcus uberis 0140J]
 gi|222114132|emb|CAR42604.1| putative modification methylase [Streptococcus uberis 0140J]
          Length = 743

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 69/189 (36%), Gaps = 15/189 (7%)

Query: 21  DKIIKGN---SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
             II+ +   ++ +LE L  K VD I+ DPPYN          D    +   DS D +  
Sbjct: 57  HAIIEADNFHALQLLEYLYPKKVDCIYIDPPYNTGAR------DWKYNNNYVDSSDNWRH 110

Query: 78  FEAYDAFTRAWLLACRRVLKPN-GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            + + +  +  L   +R+L P+ G L V    H +  +  +L+ +       ++    NP
Sbjct: 111 SK-WLSMMQKRLKIAKRILNPDTGVLIVTIDEHEVHHLRILLEEIFTGANIRMITSVINP 169

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
               +G  F    E + +             +            +  W + + SG++  R
Sbjct: 170 KGVSQGS-FARVEEYIFYIFMPESKLS---LWSDPMLGEYLPSQKVRWAVLLRSGADAQR 225

Query: 197 NKDGEKLHP 205
                  +P
Sbjct: 226 EDSKNLFYP 234



 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 10/102 (9%)

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYIDIATKRIASVQP 270
           L+    P  +I+D F GSGT+      L       R  I +   +     A +  A+   
Sbjct: 396 LIVKDNPDALIVDFFAGSGTTLHAVNLLNAEDKGNRRCILVTNNEVSEAEARELKATGYH 455

Query: 271 LGNIELTVLTGKRTE--PRVAFNLLVER--GLIQPGQILTNA 308
            G+ E       R+   PR  +++L +R  G I PG+  TN 
Sbjct: 456 QGDPEWENRGICRSVTWPRTEYSILGKRADGTILPGEYYTNQ 497


>gi|307943607|ref|ZP_07658951.1| DNA methylase N-4/N-6 domain-containing protein [Roseibium sp.
           TrichSKD4]
 gi|307773237|gb|EFO32454.1| DNA methylase N-4/N-6 domain-containing protein [Roseibium sp.
           TrichSKD4]
          Length = 961

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 3/75 (4%)

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
            +DW     S + R    D    +P + P  +  +++ + + PGD++ DPF GSGT+   
Sbjct: 68  HADWAF--TSANTRYLTHD-LHPYPAKFPPQIPGQLIAALSFPGDLVFDPFGGSGTTAVE 124

Query: 241 AKKLRRSFIGIEMKQ 255
           A +L R  + ++   
Sbjct: 125 AVRLGRRTVSLDANP 139



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 53/323 (16%), Positives = 90/323 (27%), Gaps = 81/323 (25%)

Query: 22  KIIKGNSISVL-EKLPAKSVDLIFADPPYNLQLNGQLY--------RPDHSLVDAVT--- 69
           + ++G++ + +   +   SVDLI   PPY    +  LY          D   + AV    
Sbjct: 290 EFVEGDARTDIGHTVAPASVDLIVTSPPYPNATDYHLYHRFRLFWLGWDPRELGAVEIGS 349

Query: 70  --DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH----NIFRIGTMLQNLNF 123
                   + F  Y+      L  C   L+P      I          F     L +   
Sbjct: 350 HLKHQRNGTDFAEYETEMAKVLTDCFEALQPGRHAVFIVGDAVFKGEQFSTSGALADAAA 409

Query: 124 WILNDIVWRKSNP-----MPNFRGRRFQNAHETLIWASPS---------PKAKGYTFN-- 167
               +++   + P         +  R   + E LI   P+         P  K + F   
Sbjct: 410 KCGFEVLGTVNRPIHATKRSFSKAARRARSEELLILRRPNAPVAVAIDAPAYKMWPFERT 469

Query: 168 ---------------------------------------YDALKAANEDVQMRSDWLIPI 188
                                                  + A   A +D + ++ W   +
Sbjct: 470 LRAKELSALGVADLKAPKAAKTIETELAQPALWNLRRSTFSAQFCAEKDPRPQTVWQKVL 529

Query: 189 CSG-------SERLRNKDGEKLHPTQKPEALLSRILV-SSTKPGDIILDPFFGSGTSGAV 240
            +G        +      G   +  +    L   +L  S  + G  +LDP+ GSGT    
Sbjct: 530 ENGDADAATRKDPKYATHGLHAYKGKFYPQLAKSLLNTSGVECGAKVLDPYCGSGTVPLE 589

Query: 241 AKKLRRSFIGIEMKQDYIDIATK 263
                    G +M      IA  
Sbjct: 590 CLLNGYQAFGFDMNPLAAKIAKA 612


>gi|240850032|ref|YP_002971425.1| type III restriction-modification system methylation subunit
           [Bartonella grahamii as4aup]
 gi|240267155|gb|ACS50743.1| type III restriction-modification system methylation subunit
           [Bartonella grahamii as4aup]
          Length = 645

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 71/184 (38%), Gaps = 19/184 (10%)

Query: 1   MSQKNSLAINENQNSI---FEWKDKI-IKGNSISVLEKLP---AKSVDLIFADPPYNLQL 53
           ++QK S A    +      F+    + IKG+++ VL+ +       V +I+ DPPYN   
Sbjct: 71  LAQKPSFATLRPKREESVNFDNTHNLYIKGDNLEVLKLIQRAYFGQVKMIYIDPPYNTGN 130

Query: 54  N---GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR-------VLKPNGTLW 103
           +   G  ++   +    VT    K S+ E    F  AWL            +L+ +G ++
Sbjct: 131 DFIYGDDFKDPLARYKEVTSQTTK-SNPETMGRFHTAWLNMIYPRLRLAQTLLRDDGVIF 189

Query: 104 VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
           +    H +  +  +   +     N +     N     +   F  +HE ++  +    A  
Sbjct: 190 ISIDDHEVHNLRKVCDEVFGE-ENFVAQLVWNLSSGTQAGHFTRSHEYILVYARYKTALN 248

Query: 164 YTFN 167
           Y  +
Sbjct: 249 YFKD 252



 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 71/215 (33%), Gaps = 30/215 (13%)

Query: 106 GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
           G     + +   L+  N  +  D+  +    M N     +    ET  + S   +   + 
Sbjct: 296 GGSEKQYVVAGKLRFENGLLAEDVTIKAGWAMKNQL-MSWLGGKET--FDSKGQRVTRFY 352

Query: 166 FNYDALKAA-NEDVQMRSDWLIPICSGSERLRNKD-----GEKLHPTQKPEALLSRILVS 219
           FN         E   +    ++P+  GS +  + +     G KL    KP ALL  ++  
Sbjct: 353 FNAQGRVCYEKERDTVHPKTVLPLEIGSTKKGSSELIQLLGAKLLEYPKPTALLEYLIKH 412

Query: 220 -STKPGDIILDPFFGSGTSGAVAKKL------RRSFIGI-------EMKQDY-------I 258
             T   DIILD F GS T+      L       R FI +       E  + Y        
Sbjct: 413 ICTSDNDIILDFFAGSSTTAHAVMALNAEDGGNRKFIMVQLPELCDEKSEAYKAGYKTIC 472

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
           DI ++RI         +              F +L
Sbjct: 473 DIGSERIRRAGTQIKQKHEAELTSEQPLDTGFRVL 507


>gi|206891175|ref|YP_002248577.1| DNA methylase domain protein [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206743113|gb|ACI22170.1| DNA methylase domain protein [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 389

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           W  P  S  +      G   +P   P  ++  +L   T+PGD++LDP  GSGT+  V ++
Sbjct: 152 WDYPKQSYGK---TPKGNNKYPGVTPAFIIYNLLKRYTEPGDLVLDPMAGSGTTFDVCRE 208

Query: 244 LRRSFIGIEMKQDYIDIATK 263
             R  I  ++     +I   
Sbjct: 209 EGRRCIAFDISPTRSEIIQN 228



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 64/188 (34%), Gaps = 17/188 (9%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           I   + +II+ ++ S+   L  +SVD+IF D PY   +           + A T      
Sbjct: 218 ISPTRSEIIQNDARSI--PLDNESVDMIFIDSPYGDNIRYNENPNCIGKISAET------ 269

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
              E +       +  C RVLKP   L W+IG       +      + F I   +     
Sbjct: 270 ---EDFYNELEKVMKECHRVLKPGKILAWLIGDQW----VKKKFTPVGFRIFERLCKYFE 322

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
                   RR Q +  T +W + + +   Y   +  L    +      +          +
Sbjct: 323 PVDIICVVRRGQTS-NTGVWYNRAIRFNFYLRGFKYLHIMRKPDIKTKESKTKRKINWTQ 381

Query: 195 LRNKDGEK 202
              K+ +K
Sbjct: 382 YERKNEDK 389


>gi|26251181|ref|NP_757221.1| hypothetical protein c5373 [Escherichia coli CFT073]
 gi|227885209|ref|ZP_04003014.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Escherichia coli 83972]
 gi|300973669|ref|ZP_07172321.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 45-1]
 gi|301048253|ref|ZP_07195287.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 185-1]
 gi|26111613|gb|AAN83795.1|AE016771_306 Hypothetical protein c5373 [Escherichia coli CFT073]
 gi|227837816|gb|EEJ48282.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Escherichia coli 83972]
 gi|300299875|gb|EFJ56260.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 185-1]
 gi|300410696|gb|EFJ94234.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 45-1]
 gi|307556542|gb|ADN49317.1| putative type III restriction-modification system methylation
           subunit [Escherichia coli ABU 83972]
 gi|315293251|gb|EFU52603.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 153-1]
          Length = 670

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 74/205 (36%), Gaps = 28/205 (13%)

Query: 20  KDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLN------------------GQLY 58
           K+  I+G+++  L+ L       + +++ DPPYN   +                   Q+ 
Sbjct: 108 KNIFIEGDNLDALKLLQENYLGKIKMVYIDPPYNTGNDFVYADDFVDEVSEFFLRSNQVD 167

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
           R  + L  A  ++  +F S   + +   + L   R +L+ +G + +    +    +  +L
Sbjct: 168 REGNRLT-ANPETSGRFHS--DWLSMMYSRLKLSRNLLRDDGLIVIHIDENEYPNLEKLL 224

Query: 119 QNLNFWILN--DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
             +     N   IVW K NP  +  G      HE +       +    T  +   K    
Sbjct: 225 AEIYGEKNNLGTIVWDKRNPKGDATG--VAQQHELICIYCKDREFFKTTCEFQRPKENAG 282

Query: 177 DVQMRSDWLIPICSGSERLRNKDGE 201
            +  ++  ++    G      K+ +
Sbjct: 283 KMLAKAKQILSKEGGVTEKARKEYK 307



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 21/111 (18%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQD- 256
             T KP  +  R++ S  K  DI++D F GS T+      L       R FI +++ ++ 
Sbjct: 430 FDTPKPVQVAKRLIQSICKNDDILIDFFAGSCTAAHALMLLNAEDGANRRFIMVQLPEEC 489

Query: 257 ----------Y---IDIATKRI-ASVQPLGNIELTVLTGKRTEPRVAFNLL 293
                     Y    +I   RI  + + +      +L  + TE  + F LL
Sbjct: 490 DEKSEAKKLGYSVVSEIGKNRIRRAAKKIREEFSEILATRNTELDLGFRLL 540


>gi|113474753|ref|YP_720814.1| hypothetical protein Tery_0950 [Trichodesmium erythraeum IMS101]
 gi|110165801|gb|ABG50341.1| hypothetical protein Tery_0950 [Trichodesmium erythraeum IMS101]
          Length = 501

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 45/93 (48%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           +KP   LS ++ S T   DIILDPF GSG     +   +R FIGI++    +++A   I 
Sbjct: 42  KKPIECLSFLIESLTTENDIILDPFLGSGLVARESISRKRRFIGIDINPISVELAKMLID 101

Query: 267 SVQPLGNIELTVLTGKRTEPRVAFNLLVERGLI 299
               L   E+     +  +P++     ++ G I
Sbjct: 102 LPSHLHLREILSSFEENIKPKIEATYTLDDGNI 134



 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 54/152 (35%), Gaps = 20/152 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPP-------------YNLQLNGQLYRPDHSLVDAVT 69
           I++G++  VL + P + + LI ADPP             +N  +  +   P+ S    ++
Sbjct: 325 IVEGDNRKVLSECPDEIISLIVADPPHSDRIPYLELSEMWNSLIGKK---PNFSDEIVIS 381

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH----NIFRIGTMLQNLNFWI 125
           ++  +    + Y      +     R+LKP G L +  +        F    +L +     
Sbjct: 382 NAVIRGKDRKTYIKEMGIFFDNTARILKPGGILALFFNSKDREIWNFLNQIILSSTEINF 441

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
                 + S+       R     H+ ++    
Sbjct: 442 RGYFPMKYSSNSVLQNNRTGSLKHDFVLIYQK 473


>gi|224418017|ref|ZP_03656023.1| adenine-specific DNA methylase [Helicobacter canadensis MIT
           98-5491]
 gi|253827350|ref|ZP_04870235.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313141558|ref|ZP_07803751.1| type II dna modification enzyme [Helicobacter canadensis MIT
           98-5491]
 gi|253510756|gb|EES89415.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313130589|gb|EFR48206.1| type II dna modification enzyme [Helicobacter canadensis MIT
           98-5491]
          Length = 859

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 72/198 (36%), Gaps = 23/198 (11%)

Query: 1   MSQKNSLAINENQNSIFEWKD-KIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQ 56
           +S++N   +    +++ E    ++IK ++   L  L  K    +DLI+ DPPYN   +G 
Sbjct: 361 LSEENYYKLLGAFDNLDEILSGELIKSDNFQALNSLMPKYQDKIDLIYIDPPYNTGGDGF 420

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
           +Y              DKF +  ++       L   +  LK +G++++    +   R+  
Sbjct: 421 VYT-------------DKF-NHSSWLTMMNNRLDLAKEFLKNSGSIFISIDDNEQARLKI 466

Query: 117 MLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY----TFNYDAL 171
           +   +         +  K     +   + F   HE  I          +      N    
Sbjct: 467 LCDEMFGEENFVANIVWKRKRGRDNSAKYFSKTHEYCIVYGKDTCNLNFNLLEIDNKTKK 526

Query: 172 KAANEDVQMRSDWLIPIC 189
           +  N D   R ++ +  C
Sbjct: 527 QYKNPDSDKRGEYRLLAC 544



 Score = 63.1 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 28/44 (63%)

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +I+LD F GSGT+ A A KL R ++G+EM + +  +   R+  V
Sbjct: 686 NIVLDFFAGSGTTLATAHKLGRKWLGVEMGEHFYQVVIPRMKKV 729


>gi|167038170|ref|YP_001665748.1| putative RNA methylase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|167039121|ref|YP_001662106.1| putative RNA methylase [Thermoanaerobacter sp. X514]
 gi|256750918|ref|ZP_05491802.1| putative RNA methylase [Thermoanaerobacter ethanolicus CCSD1]
 gi|300913289|ref|ZP_07130606.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter sp. X561]
 gi|307723697|ref|YP_003903448.1| DNA methylase N-4/N-6 domain-containing protein [Thermoanaerobacter
           sp. X513]
 gi|320116579|ref|YP_004186738.1| DNA methylase N-4/N-6 domain-containing protein [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|166853361|gb|ABY91770.1| putative RNA methylase [Thermoanaerobacter sp. X514]
 gi|166857004|gb|ABY95412.1| putative RNA methylase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256750253|gb|EEU63273.1| putative RNA methylase [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889974|gb|EFK85119.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter sp. X561]
 gi|307580758|gb|ADN54157.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter sp. X513]
 gi|319929670|gb|ADV80355.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 259

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 38/78 (48%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           + S  ER + K  +  +       +   +++  ++ GD +LDP  GSGT+    K L R 
Sbjct: 13  VWSFPERGKWKTHKGNYRGNFAPQIPRNVILRYSQEGDFVLDPMVGSGTTLIETKILNRR 72

Query: 248 FIGIEMKQDYIDIATKRI 265
            IG ++  D +++  + +
Sbjct: 73  GIGFDINPDSVELTKRNL 90


>gi|325475270|gb|EGC78455.1| adenine-specific DNA modification methyltransferase [Treponema
           denticola F0402]
          Length = 428

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 72/244 (29%), Gaps = 44/244 (18%)

Query: 1   MSQKNSLAINENQNSIF---EWKDKIIKGNSISVL----EKLPAKSVDLIFADPPYNLQL 53
           +  +N  +  EN+   F   + K+  I+ +++  L    +    K + +I+ DPPYN   
Sbjct: 20  LKNQNKFSFTENKVKSFNSEDAKNLYIESDNLYALLFLQKDYKDK-IKIIYIDPPYNTGK 78

Query: 54  NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
                              D F S   +  +    L   + +L  +G +++         
Sbjct: 79  KFTYA--------------DNFQSKTEWMNYLYVRLSLAKNLLTDDGLIFISIDDKTCPY 124

Query: 114 IGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW------------------ 154
           +  +L  +         +   ++     R +    +HE ++                   
Sbjct: 125 LRIILDEIFGTKNFISTLVWNNSTGGGLRKKHINTSHEYIVLYAKDKTKVKPMTAPMPEK 184

Query: 155 ---ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
                    A G  F Y      N+    R  + I    G+  +           +    
Sbjct: 185 AKKMYKYKDADGRFFRYQQFAWKNKTDAKRQKYPIKTPDGNFIVPKAGYIYRFVEKSFFN 244

Query: 212 LLSR 215
           LL +
Sbjct: 245 LLEK 248



 Score = 43.4 bits (101), Expect = 0.058,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGSGTSGAVAKKL------RRSFIGIE 252
           G K+    KP +LL  +        D ++LD F GS T+     +L       R FI ++
Sbjct: 311 GAKIFDYAKPVSLLKYLFKLVPNSDDAVVLDFFSGSATTAHAVMELNAELNENRKFILVQ 370

Query: 253 MKQ 255
             +
Sbjct: 371 RGE 373


>gi|58428161|gb|AAW77198.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 508

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 41/129 (31%), Gaps = 4/129 (3%)

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R        L++ +     +              D   +  W  P    +  +   D   
Sbjct: 208 RHASGDLYKLVFFAMPVCVRAGMRLPMCCGNPPMDEFDQRSWWTPTLDDAAWVLPADLRA 267

Query: 203 LHPTQKPE----ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
             P    +      +   +   ++PG+ + DPF G G++   A    R+  G+E+     
Sbjct: 268 ADPLNGRDCGWFNQMRPFVRHFSRPGEQVFDPFCGFGSTLPAAALEGRNAHGMEIDPARA 327

Query: 259 DIATKRIAS 267
            +A  R+  
Sbjct: 328 QLARARLQQ 336


>gi|84625379|ref|YP_452751.1| hypothetical protein XOO_3722 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84369319|dbj|BAE70477.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 480

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 41/129 (31%), Gaps = 4/129 (3%)

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R        L++ +     +              D   +  W  P    +  +   D   
Sbjct: 180 RHASGDLYKLVFFAMPVCVRAGMRLPMCCGNPPMDEFDQRSWWTPTLDDAAWVLPADLRA 239

Query: 203 LHPTQKPE----ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
             P    +      +   +   ++PG+ + DPF G G++   A    R+  G+E+     
Sbjct: 240 ADPLNGRDCGWFNQMRPFVRHFSRPGEQVFDPFCGFGSTLPAAALEGRNAHGMEIDPARA 299

Query: 259 DIATKRIAS 267
            +A  R+  
Sbjct: 300 QLARARLQQ 308


>gi|289577729|ref|YP_003476356.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter italicus
           Ab9]
 gi|289527442|gb|ADD01794.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter italicus
           Ab9]
          Length = 259

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 38/78 (48%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           + S  ER + K  +  +       +   +++  ++ GD +LDP  GSGT+    K L R 
Sbjct: 13  VWSFPERGKWKTHKGDYRGNFAPQIPRNVILRYSQEGDFVLDPMVGSGTTLIETKILNRR 72

Query: 248 FIGIEMKQDYIDIATKRI 265
            IG ++  D +++  + +
Sbjct: 73  GIGFDINPDSVELTKRNL 90



 Score = 41.9 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 46/141 (32%), Gaps = 17/141 (12%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G+  + L+++   S+DLI   PPY   +     R +  L +         S  + +    
Sbjct: 105 GDVRN-LKEISDSSIDLIITHPPYLNIIKYSNGRIEGDLSN--------ISDVKKFCDEL 155

Query: 86  RAWLLACRRVLKPNGTL-WVIGSYHN-------IFRIGTMLQNLNFWILNDIVWRKSNPM 137
              ++   RVLK +     +IG            + +  +     F +  DI+  + N  
Sbjct: 156 EKGVIELYRVLKEDRYCAILIGDTRKSGHYIPLSYYVMRLFLKNGFVLKEDIIKVQHNCK 215

Query: 138 PNFRGRRFQNAHETLIWASPS 158
                 +    +   +     
Sbjct: 216 STPYWEKQVEKYNFYMIMHEH 236


>gi|319641265|ref|ZP_07995964.1| methyltransferase [Bacteroides sp. 3_1_40A]
 gi|317387138|gb|EFV68018.1| methyltransferase [Bacteroides sp. 3_1_40A]
          Length = 593

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 72/194 (37%), Gaps = 14/194 (7%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
             +I+G+++  L  L      ++D+I+ DPPYN      +Y       D   DS D +  
Sbjct: 74  HILIEGDNLEALTALAYTHEGNIDVIYIDPPYNTGNKDFVYN------DKFVDSEDSYRH 127

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSN 135
            + + +F    L   +++L   G +++    +   ++  +   +     +  +I+WRK +
Sbjct: 128 SK-WLSFMNKRLRIAKQLLSDKGVIFISIDDNEHAQLKLLCDEVFGLNNLCGNIIWRKKS 186

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI-PICSGSER 194
                        HE ++    + +           +   + +  R  + I P+      
Sbjct: 187 GGGQTDAFFVT-EHEYILVYRKTDQFIWQDETVAISEDTFKYMDERGRYKITPLEKWGSS 245

Query: 195 LRNKDGEKLHPTQK 208
              +D   ++   K
Sbjct: 246 AHREDRPSMYFAIK 259



 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 41/117 (35%), Gaps = 7/117 (5%)

Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
            ++ + W +  P+ K Y  +    +  N+   +  +                 + +    
Sbjct: 290 MNDEIDWRNGKPQEKTYFTSISDKRKVNKSRSIYYNIGETGEGTKLLTDIFSQKDIFGNP 349

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYI 258
           KP  L+  ++ S       ILD F GSGT+     +L       R  I +   ++ I
Sbjct: 350 KPLNLVKDLI-SHNNRDSTILDFFAGSGTTLHATMQLNAEDGGHRKCILVTNNENNI 405


>gi|308062782|gb|ADO04670.1| type III R-M system modification enzyme [Helicobacter pylori Cuz20]
          Length = 445

 Score = 63.1 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 69/187 (36%), Gaps = 22/187 (11%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSL--------VDAV 68
           K  +IKG+++  L+ L    ++ + +I+ DPPYN + +  +Y  D S         +D  
Sbjct: 89  KHILIKGDNLDALKILRQSYSEKIKMIYIDPPYNTKNDNFIYSDDFSQSNEEILKTLDYS 148

Query: 69  TDSWDKFSSF------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
            +  D   +         + +F    LL  + +LK +G +++    +   ++  +   + 
Sbjct: 149 KEKLDYIKNLFGSKCHSGWLSFMYPRLLLAKDLLKQDGVIFISIDDNEAAQLKLLCDEIF 208

Query: 123 --FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
                + ++VW+  +   N       +    L +A          F+       N  +  
Sbjct: 209 GEDNFVANLVWKSKSGGANDSKNIITDQEYILCYAKNITNLN---FDSVEYNEENLKLYN 265

Query: 181 RSDWLIP 187
             D    
Sbjct: 266 CQDEFFD 272



 Score = 55.4 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 6/103 (5%)

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK------DGEK 202
           H          + K YT  Y  +      ++ +S+    + +   RL  +      D  K
Sbjct: 329 HFIEFEKDKKGQWKIYTKQYLNMDYDGNRIERKSNLRSIVDNVDGRLGTRELQRLFDNLK 388

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +    KP  L+SR++  ST  GDIILD F GSGT+     +  
Sbjct: 389 IFSYPKPTKLISRLIELSTNEGDIILDFFAGSGTTAHAVLESN 431


>gi|188524337|ref|ZP_03004371.1| adenine specific DNA methyltransferase [Ureaplasma urealyticum
           serovar 12 str. ATCC 33696]
 gi|195660179|gb|EDX53559.1| adenine specific DNA methyltransferase [Ureaplasma urealyticum
           serovar 12 str. ATCC 33696]
          Length = 529

 Score = 63.1 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 74/250 (29%), Gaps = 21/250 (8%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKL-------------PAKSVDLIFADPP 48
             +    +N+  N      + +I G +  VL+ L                  D+I+ DPP
Sbjct: 73  KNEQLSFMNDAHNLFKNDTNSLIIGENYDVLKNLLVLERERERETSGRDAYYDVIYIDPP 132

Query: 49  YNL---QLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI 105
           YN    + +G  +     +V +     DKF S   +       L   + +LK +G ++V 
Sbjct: 133 YNTEASKTDGNNFSEKDDVVASKFVYRDKF-SRNGWLNMMNERLKLAKNLLKNDGVIFVS 191

Query: 106 GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
              +    +  ++  +         +           +     HE ++  S +      +
Sbjct: 192 IDDNEQAYLKVLMDEIFGEENFVTNFIWQKKSGGGLNKLIYEGHEYILCYSKNNYNFCLS 251

Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPG 224
                +    +     ++              K   K  H  +  E L            
Sbjct: 252 EKNKKMSGFIKYKDKNNNSFFINSDIIRNNFGKKDNKFEHRNKAYEDLSKEDKEKWNLKL 311

Query: 225 D---IILDPF 231
           D    IL PF
Sbjct: 312 DNKNYILVPF 321



 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 21/58 (36%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           I +                 KP  L+  +L   +     +LD F GSGT+G    +L 
Sbjct: 355 IWTKDGNNEVDSLNIDFQNPKPIQLIMHLLDLHSNKNARVLDFFAGSGTTGHAVLELN 412


>gi|167760088|ref|ZP_02432215.1| hypothetical protein CLOSCI_02460 [Clostridium scindens ATCC 35704]
 gi|167662213|gb|EDS06343.1| hypothetical protein CLOSCI_02460 [Clostridium scindens ATCC 35704]
          Length = 271

 Score = 63.1 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 35/74 (47%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           I S  ER         +       +   +++  +K  D ILD F GSGT+   AK L R+
Sbjct: 39  IWSFPERGSWATHSGKYRGNWSPYIPRNLILRYSKKKDWILDQFLGSGTTLIEAKLLGRN 98

Query: 248 FIGIEMKQDYIDIA 261
            IG+++  + + ++
Sbjct: 99  AIGVDINSEAVKLS 112



 Score = 44.2 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 54/168 (32%), Gaps = 26/168 (15%)

Query: 10  NENQNSIFEWKDKII--KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
           N N N   + + KI   +GN+ + L  +  +S+DLI   PPY       + R    +   
Sbjct: 113 NTNLNFTCQERSKIFTKQGNANN-LSFIKDESIDLICTHPPY-----ADIIRYSKEIPGD 166

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNIFRIGTM-------LQ 119
           ++        +E +            RVLK  G    +IG       +  +         
Sbjct: 167 ISH-----LKYEKFLKELEQVARESYRVLKRQGICAIMIGDIRRKGYVLPLGMNSMQKFV 221

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQN-----AHETLIWASPSPKAK 162
              F +   I+  + N    +     +      AHE +     +    
Sbjct: 222 EAGFKLKEIIIKEQHNCRSAYYWEGRERKFLMLAHEYIFILEKTDCYN 269


>gi|207108936|ref|ZP_03243098.1| type III DNA modification enzyme (methyltransferase) [Helicobacter
           pylori HPKX_438_CA4C1]
          Length = 259

 Score = 63.1 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 62/162 (38%), Gaps = 18/162 (11%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHS--------LVDAV 68
           K  +IKG+++  L+ L    ++ + +I+ DPPYN + +  +Y  D S         +D  
Sbjct: 98  KHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNDNFIYGDDFSQSNEEVLKQLDYS 157

Query: 69  TDSWDKFSSF------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL- 121
            +  D   +         + +F    LL  + +LK +G +++    +   ++  +   + 
Sbjct: 158 KEKLDYIKNLFGSKCHSGWLSFMYLRLLLAKDLLKQDGVIFISIDDNECAQLKLLCDEIF 217

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
                 +         P     + +  HE ++    +   K 
Sbjct: 218 GEGNFIETFLWNKTQTPPSASNKTRKTHEFILCYQKNKDNKK 259


>gi|91204434|emb|CAJ70934.1| similar to adenine-specific DNA methylase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 368

 Score = 63.1 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 87/213 (40%), Gaps = 31/213 (14%)

Query: 19  WKDKIIKGNSISVLEKLP----------AKSVDLIFADPPYNLQ--------LNGQLYRP 60
           W +K+I G++  +L  L              + LI  DPP+++         +    +  
Sbjct: 110 WTNKLIWGDNKLILSSLKNGPLRAEIEKEGGIKLICIDPPFDVGADFSMDIEIGDDTFTK 169

Query: 61  DHSLVD--AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
             ++++  A  D+W K +  +++ A     L+  R +L  NG+++V   +     +  ++
Sbjct: 170 KPNVLEELAYRDTWGKGA--DSFIAMIYERLVLMRDLLVENGSIYVHCDWRVNSFMRLVM 227

Query: 119 QNLNFW--ILNDIVWRKSNPMPNFR-GRRFQNAHETLIWASP------SPKAKGYTFNYD 169
           + +       N+I W++  P       R++  + +++++ +       + + K Y   Y 
Sbjct: 228 EEVFGTSVYRNEIRWKRQPPRGAKAISRQYARSSDSMLYYTKSDSYTWNAQFKEYDQKYI 287

Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
             K   +D   R   +  I   SE+   +  +K
Sbjct: 288 LSKFNKQDKDGRWYRIDNIGDYSEKSIAEFRKK 320


>gi|295100452|emb|CBK97997.1| Adenine specific DNA methylase Mod [Faecalibacterium prausnitzii
           L2-6]
          Length = 700

 Score = 63.1 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 67/190 (35%), Gaps = 12/190 (6%)

Query: 21  DKIIKGN---SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
             +I+ +   ++ +L+ L A  VD I+ DPPYN          D    +   DS D +  
Sbjct: 129 HTLIEADNYHALQLLDYLYAGKVDCIYIDPPYNTGAK------DWKYNNDYVDSADTYRH 182

Query: 78  FEAYDAFTRAWLLACRRVLKP-NGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            + + +F +  L   +++L P +  L V         +G +L+ +       +V    NP
Sbjct: 183 SK-WLSFMQRRLQLAKKLLNPADSVLIVTIDEKEYLHLGCLLEEIFPEANMQMVSSVINP 241

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK-AANEDVQMRSDWLIPICSGSERL 195
               R   F    E +                D  +   N+       W   I +G+   
Sbjct: 242 AGVSRHGAFARVDEYIYIIRIGTSEAQRVNLSDEWRIRPNDKRATMLRWNTLIRTGTNVR 301

Query: 196 RNKDGEKLHP 205
           R+      +P
Sbjct: 302 RSDRKNLFYP 311



 Score = 38.4 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 8/81 (9%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSST--KPGDIILDPFFGSGTSGAVAKKLR-- 245
           +G++ L +  GEK     K    +   +      KP  +I+D F GSGT+      L   
Sbjct: 437 NGTKLLNSIIGEKRFTFPKSLYAVHDTIRFFVANKPNALIVDFFAGSGTTMHAVNLLNAE 496

Query: 246 ----RSFIGIEMKQDYIDIAT 262
               R  I +   +   D A 
Sbjct: 497 DGGHRRCIMVTNNEVSADEAK 517


>gi|7465375|pir||B64710 site-specific DNA-methyltransferase (EC 2.1.1.-) HP1522 -
           Helicobacter pylori (strain 26695)
          Length = 627

 Score = 63.1 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 51/119 (42%), Gaps = 17/119 (14%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSL--------VDAV 68
           K  +IKG+++  L+ L    ++ + +I+ DPPYN +    +Y  D S         +D  
Sbjct: 89  KHVLIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNENFIYGDDFSQSNEEVLKTLDYS 148

Query: 69  TDSWDKFSSF------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
            +  D   +         + +F    LL  + +LK +G +++    +   ++  +   +
Sbjct: 149 KEKLDYIKNLFGSKCHSGWLSFMYPRLLLAKDLLKQDGVIFISIDDNECAQLKLLCDEI 207



 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
             N   E +    KP  L++R++  ST  GDIILD F GSGT+     +  
Sbjct: 383 FNNSSDESIFSNPKPTKLINRLIELSTNEGDIILDFFAGSGTTAHAVLESN 433


>gi|78044466|ref|YP_361025.1| putative DNA methylase [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996581|gb|ABB15480.1| putative DNA methylase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 329

 Score = 63.1 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 5/116 (4%)

Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
            H   +                     N  ++  + W  P          K      P  
Sbjct: 67  KHSQSLLKEEEKNYTPVNNKPRTWAPENFSLETTTVWSFPDRGSWATHSGKYRGNWSPF- 125

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
               +   I++  +K G+++LD F GSGT+   AK L+R  IG+++  + + +  K
Sbjct: 126 ----IPRNIILRYSKEGEVVLDQFVGSGTTLVEAKLLKRKGIGVDINPEAVSLTLK 177



 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 46/138 (33%), Gaps = 23/138 (16%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE--AYDA 83
           G++ ++   L  +S+DLI   PPY             +++    +     S F+   +  
Sbjct: 194 GDARNLY-FLKDESIDLICTHPPY------------SNIIKYSDNIEGDLSHFDVNDFLL 240

Query: 84  FTRAWLLACRRVLKPNGTL-WVIGSYHNI-------FRIGTMLQNLNFWILNDIVWRKSN 135
                   C RVLK       +IG            F +  + + + F +   I+  + N
Sbjct: 241 EMEKVAKECYRVLKKGKFCAILIGDTRRKGYIIPIGFSVMEIFRKIGFKLKEIIIKEQHN 300

Query: 136 PMPNFRGRRFQNAHETLI 153
                  R     +  L+
Sbjct: 301 CSSTGYWRNQSIKYNFLL 318


>gi|227501376|ref|ZP_03931425.1| possible site-specific DNA-methyltransferase
           (cytosine-N(4)-specific) [Anaerococcus tetradius ATCC
           35098]
 gi|227216439|gb|EEI81854.1| possible site-specific DNA-methyltransferase
           (cytosine-N(4)-specific) [Anaerococcus tetradius ATCC
           35098]
          Length = 102

 Score = 63.1 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 11/86 (12%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            + II  ++IS L++ P K+ D     PPY      + Y+ +  +         +  S E
Sbjct: 9   TNYIINLDAISALKEFPDKTFDCCITSPPY---YGLRDYKAEGQI--------GREESPE 57

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVI 105
            Y           +RVLK  GTLWV+
Sbjct: 58  EYLNKLIEVFREVKRVLKKEGTLWVV 83


>gi|47092613|ref|ZP_00230401.1| type III restriction system methylase [Listeria monocytogenes str.
           4b H7858]
 gi|47019041|gb|EAL09786.1| type III restriction system methylase [Listeria monocytogenes str.
           4b H7858]
          Length = 423

 Score = 63.1 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 61/153 (39%), Gaps = 22/153 (14%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQL------NGQLYRPDHSLVDAVTD- 70
           +  I G+++  L+ L       +D+I+ DPPYN         N +  + ++ L + + D 
Sbjct: 77  NLFITGDNLEALKLLQESYLGKIDMIYIDPPYNTGKDFVYQDNFKKTKKENDLSEGILDE 136

Query: 71  SWDKFSSFE--------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
             D+    E         +       L   R +L  +G ++V    + I  +  +L  + 
Sbjct: 137 EGDRLVKNEKSNGRYHSDWLTMIYPRLKLARNLLSDSGIIFVSIDENEIANLELLLTEIF 196

Query: 123 --FWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
               +   IVW K NP  + +G      HE ++
Sbjct: 197 GENNLAGTIVWDKRNPKGDSKG--VSMQHEYIV 227


>gi|281420846|ref|ZP_06251845.1| type III restriction system methylase [Prevotella copri DSM 18205]
 gi|281405138|gb|EFB35818.1| type III restriction system methylase [Prevotella copri DSM 18205]
          Length = 667

 Score = 63.1 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 58/161 (36%), Gaps = 19/161 (11%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQLN---GQLYRPDHSLVDAVTDSWDKFSS 77
           I+G+++ VL+ L       V +I+ DPPYN   +   G  Y  +     + ++ +D   +
Sbjct: 103 IEGDNLDVLKCLKETYLHKVKMIYIDPPYNTGKDFIYGDNYAEEADNYLSNSEQYDDQGN 162

Query: 78  ------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
                          +       L   +  LK +G +++    H +  +  +   + F  
Sbjct: 163 RLATNMETNGRFHTDWLNMIYPRLKVAKDFLKEDGVIFISIDDHEVTNLHKVCDEI-FGA 221

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
            N           +   R+    HE ++    +  A+ Y +
Sbjct: 222 ANFTGCIVLQTATDNNPRQINTEHEYILCYCKNKDAQEYWY 262


>gi|261838795|gb|ACX98561.1| type III R-M system modification enzyme [Helicobacter pylori 51]
          Length = 457

 Score = 63.1 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 69/185 (37%), Gaps = 18/185 (9%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSL--------VDAV 68
           K  +IKG+++  L+ L    ++ + +I+ DPPYN + +  +Y  D S         +D  
Sbjct: 89  KHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNDNFIYSDDFSQSNEEVLKTLDYS 148

Query: 69  TDSWDKFSSF------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL- 121
            +  D   +         + +F    LL  + +LK +G +++    +   ++  +   + 
Sbjct: 149 KEKLDYIKNLFGSKCHSGWLSFMYPRLLLAKDLLKQDGVIFISIDDNEAAQLKLLCDEIF 208

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
                   + R +        +  +N    L +   +   K    + +     +E    R
Sbjct: 209 GEGNFVAQMPRLTKKAGKSTNQIAKNHDYVLCYQKNNINFKQIDIDENDYPLKDEFYNER 268

Query: 182 SDWLI 186
             + +
Sbjct: 269 GGYKL 273



 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 44/128 (34%), Gaps = 3/128 (2%)

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
           +  +  W      +  +N     +  R      T    +    +K Y   Y         
Sbjct: 318 IDWVWRWSKAKFDFGLANGFVEVKNNRIYTKTYT---KAKISDSKPYKIEYFNRTKNISS 374

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           ++   +      S  +     + + +    KP  L+S ++  +T+  DIILD F GSGT+
Sbjct: 375 IEFLDNKYSNDMSNKKLQSIFNVKNIFDYSKPVELISFLINQTTEKNDIILDFFAGSGTT 434

Query: 238 GAVAKKLR 245
                +  
Sbjct: 435 AHAVLESN 442


>gi|15828951|ref|NP_326311.1| type III restriction-modification system: methylase [Mycoplasma
           pulmonis UAB CTIP]
 gi|14089894|emb|CAC13653.1| TYPE III RESTRICTION-MODIFICATION SYSTEM: METHYLASE [Mycoplasma
           pulmonis]
          Length = 587

 Score = 63.1 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 75/206 (36%), Gaps = 23/206 (11%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKL------------PAKSVDLIFADPPYN---LQLNGQL 57
           QN I E  +++I G +   L+ L             A   ++I+ DPPYN    + +G  
Sbjct: 82  QNDILEQDNQLIIGENYDALKNLIVIERERERERDQANKYNIIYIDPPYNTEATKTDGNT 141

Query: 58  YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
              D   +   T  +    S   +  F    L   R++L  +G ++V    +    +  +
Sbjct: 142 IANDKEDIKNDTFQYRDRFSRNGWLNFMNEILTLARKLLSDDGIIFVSIDDNEQAYLKVL 201

Query: 118 LQNLN--FWILNDIVWRKSN--PMPNFRGRRFQN-AHETLIWASPSP---KAKGYTFNYD 169
           +  +      ++ I WRK+N       + ++F N  HE +   +       +  Y    +
Sbjct: 202 MDEIFGEENFISTIKWRKTNSPSGNTNQNKKFVNIQHEYIHLYAKDKGEINSLNYYKYDE 261

Query: 170 ALKAANEDVQMRSDWLIPICSGSERL 195
                N+      D  +    G  +L
Sbjct: 262 EDFEKNQYKFRDKDEQLFQQRGYYKL 287



 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 49/170 (28%), Gaps = 19/170 (11%)

Query: 93  RRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN----- 147
             +  P+GT + IG   N   +   +    +    D              +  +N     
Sbjct: 307 YEIEAPDGTFFKIGQNMN---VKNAVDKSCYTWSYDTFLEGKKQGFIVIKKNNKNGFWEA 363

Query: 148 ---AHETLIWASPSPKA--------KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
               +  +I+   + K             F+        +    + D+     + S    
Sbjct: 364 HRKVYSNVIFNPKTRKVETQEKGLEYNDYFDLSNKSNKKDTFNEKIDYYHESTTQSSAND 423

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            K         KP  L+  ++         ILD F GSGT+G     L R
Sbjct: 424 LKQIGIFFKFSKPYKLIKHLINLYPNKDAKILDFFAGSGTTGHAVLDLNR 473


>gi|71893735|ref|YP_279181.1| putative type III restriction-modification system: methylase
           [Mycoplasma hyopneumoniae J]
 gi|71851862|gb|AAZ44470.1| putative type III restriction-modification system: methylase
           [Mycoplasma hyopneumoniae J]
          Length = 575

 Score = 63.1 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 68/222 (30%), Gaps = 24/222 (10%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKL---------PAKSVDLIFADPPYNLQL 53
           +K+      +       ++ +I G +  VL+ L            + DLI+ DPPYN Q 
Sbjct: 81  EKDEKLSFSSSKMKDNLQNSLIIGENYDVLKNLIGVEREREREDSNFDLIYIDPPYNTQK 140

Query: 54  NGQLYRP--DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
                    D  +        DKFS    +       L   R++LK +G ++V    +  
Sbjct: 141 TSDDGNNLTDDQITADKFIYRDKFSRT-GWLNLLNERLKLARQLLKEDGVIFVSIDDNEQ 199

Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRG----RRFQNAHETLIWASPSPKAKGYTFN 167
             +  ++  +                               +E ++  +       + + 
Sbjct: 200 AYLKVLMDEIFGEENFVANMVWRKSAQGTHKDVEVDNLNTVNEYIVTYAKDKSKFKFDYV 259

Query: 168 YDALKAANEDVQMRSD--------WLIPICSGSERLRNKDGE 201
             + +  +E  + R           L P+ +       + G+
Sbjct: 260 KHSQEKLDEIYKFRDKNFEKYGAYKLQPLVNSWNGAWYRSGQ 301



 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 9/89 (10%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI-ILDPFFGSGTSGAVAKKL 244
           I    G+  L +    K     KP  L+  ++   +   +I +LD F GSGT+G    +L
Sbjct: 396 IYTSEGARELNSIFNSKEFDYPKPVRLIKYLIKMLSSKKNIRVLDFFAGSGTTGQAVLEL 455

Query: 245 R------RSFIGIEMKQDYI--DIATKRI 265
                  R+F  +   ++ I  ++  +R+
Sbjct: 456 NKEDNGTRTFTLVTNNENNIGQNVTYERL 484


>gi|325965443|ref|YP_004243348.1| DNA methylase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323471530|gb|ADX75214.1| DNA methylase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 592

 Score = 63.1 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 29/56 (51%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           T+ P   ++ ++   T PGD +LDPF GSG +G  A    R  +  ++    + IA
Sbjct: 29  TKVPPEGIAPVIEHYTNPGDTVLDPFCGSGMTGVAALLTGRKGLLSDLAPAAVHIA 84



 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 50/141 (35%), Gaps = 18/141 (12%)

Query: 28  SISVLEKLPAKSVDLIFADPPYNLQ-------------LNGQLYRPDHSLVDAVTDSWDK 74
           S + L  L  +SVD +F DPP+                L+      + ++V     +   
Sbjct: 346 SATELRHLQDQSVDYVFTDPPFGANIYYSDASFLWESWLDDFTDTTNEAIVSTSLTAEHG 405

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNG---TLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
             S   Y+    A      RVLKP      ++          +   +++ +  + + + +
Sbjct: 406 GKSLNDYEKLMSASFGEIARVLKPGAWASVMFHSSDDAVWSSLERAIESADLTLESAVAF 465

Query: 132 RKSNPMPNFRGRRFQNAHETL 152
            KS P   F+G +     E +
Sbjct: 466 DKSQPS--FKGVKQMTNQERV 484


>gi|84683492|ref|ZP_01011395.1| DNA modification methylase [Maritimibacter alkaliphilus HTCC2654]
 gi|84668235|gb|EAQ14702.1| DNA modification methylase [Rhodobacterales bacterium HTCC2654]
          Length = 409

 Score = 63.1 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 39/103 (37%)

Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
           F+    +   E V+     +    +  +R  +   E  +       L    +   TKPG 
Sbjct: 26  FDDFGQRTMTETVEGIPYLINEFWTAGQRQAHSIHEVSYRACFKAQLPEFFIKRLTKPGG 85

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           ++ DPF G GT+   A  + R   G ++    + +   R+  +
Sbjct: 86  VVFDPFMGRGTTPVQAALMGRQAFGNDINPLSVLLTRPRLRPI 128



 Score = 40.0 bits (92), Expect = 0.70,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 13/122 (10%)

Query: 32  LEKLPAKSVDLIFADPPYN--LQLNGQLY-RPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
           L  +   SVDL    PP+   +      + R   + +D  T + D   + EA+ A     
Sbjct: 270 LRGVADASVDLTVTSPPFLDIVHYAADNWLRCWFAGIDPETVAIDMHRTEEAWTAMVHRV 329

Query: 89  LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
           L    R+L+  G +         F +G +       +L  +VW+ +  +P  R     N 
Sbjct: 330 LAEQARILRSGGYV--------AFEVGEV--RNGKVLLERLVWKAAEGLPFNRLGVMVND 379

Query: 149 HE 150
            E
Sbjct: 380 QE 381


>gi|145640734|ref|ZP_01796317.1| twin-argninine leader-binding protein DmsD [Haemophilus influenzae
           R3021]
 gi|145274660|gb|EDK14523.1| twin-argninine leader-binding protein DmsD [Haemophilus influenzae
           22.4-21]
          Length = 381

 Score = 63.1 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 77/206 (37%), Gaps = 32/206 (15%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       + LI+ DPPYN   +   Y              DKF S
Sbjct: 203 NLIIKGNNLIALHSLAKQFKGKIKLIYIDPPYNTGEDSFKY-------------NDKF-S 248

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
              +  F +  L   + +L  +G ++V   Y+    +  +L  +  +  ++ V   +   
Sbjct: 249 HSTWLTFMKNRLEIAKTLLADDGVIFVHCDYNEDGYLRVLLDEI--FTEDNFVANIAIRS 306

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
            +  G + Q+  +T++    +                N    ++  W     +    L +
Sbjct: 307 NSISGNKTQHKEKTILKNKDTILVYK-----KNSLKINPQYTIKQKWDTHYNAI---LIS 358

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKP 223
           +DGE      KP+ LL  ++ +    
Sbjct: 359 EDGE-----LKPKKLLDHLIENKNFK 379


>gi|18450312|ref|NP_569183.1| hypothetical protein pli0029 [Listeria innocua Clip11262]
 gi|16415813|emb|CAC42027.1| pli0029 [Listeria innocua Clip11262]
          Length = 355

 Score = 63.1 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 61/153 (39%), Gaps = 22/153 (14%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQL------NGQLYRPDHSLVDAVTD- 70
           +  I G+++  L+ L       +D+I+ DPPYN         N +  + ++ L + + D 
Sbjct: 77  NLFITGDNLEALKLLQESYLGKIDMIYIDPPYNTGKDFVYQDNFKKTKKENDLSEGILDE 136

Query: 71  SWDKFSSFE--------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
             D+    E         +       L   R +L  +G ++V    + I  +  +L  + 
Sbjct: 137 EGDRLVKNEKSNGRYHSDWLTMIYPRLKLARNLLSDSGIIFVSIDENEIANLELLLTEIF 196

Query: 123 --FWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
               +   IVW K NP  + +G      HE ++
Sbjct: 197 GENNLAGTIVWDKRNPKGDSKG--VSMQHEYIV 227


>gi|316997286|dbj|BAJ52739.1| adenine specific DNA methyltransferase [Campylobacter lari]
          Length = 613

 Score = 63.1 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 60/172 (34%), Gaps = 27/172 (15%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPD-------- 61
                  K+ IIKG+++  L+ L     + + +I+ DPPYN + +  +Y  D        
Sbjct: 86  SKDTQNTKNIIIKGDNLHALKLLKQSYYEKIKMIYIDPPYNTKNDKFIYNDDFVKEHRKL 145

Query: 62  --HSLVDAVTDSWDKFSS--------------FEAYDAFTRAWLLACRRVLKPNGTLWVI 105
              + +  + D  ++  S                A+ +F    L   R +L+ +G +++ 
Sbjct: 146 LLQTGLLEIDDEGNEIRSETLNFFINQKGDRIHSAWLSFMLPRLKLARDLLREDGVIFIS 205

Query: 106 GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
              +    +  +   +         +  +N             HE ++  S 
Sbjct: 206 IDDNEQANLKILCDEIFGEENFVADFIWNNKYTTSNDTDVSYQHEHILCYSK 257



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 67/175 (38%), Gaps = 25/175 (14%)

Query: 140 FRGRRFQNAHETLI--------WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
            +GR  + + E L+        + + +      T+  +  +          + +      
Sbjct: 317 PKGRYPRYSKEKLLDLYNKNELYFNSNGGVDKKTYLSEVRQGVTCGTMWHYNDVGHTHGN 376

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTK--PGDIILDPFFGSGTSGAVAKKL----- 244
           +E L +  G+ +    K   ++ RI+  ST     DIILD F GSGT+     +L     
Sbjct: 377 NEELASILGKGVFGDPKGVLMIKRIIQLSTNTNQNDIILDFFAGSGTTAQAVMELNAQDN 436

Query: 245 -RRSFIGIEMKQD--------YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAF 290
             R FI +++ +           D     + S  P+ + ++T+   KR   ++A 
Sbjct: 437 GNRKFILVQLDESIDEKKSKVAYDFCKNELNSKNPVIS-DITIERVKRAGEKIAK 490


>gi|297379795|gb|ADI34682.1| type III DNA modification enzyme (methyltransferase) [Helicobacter
           pylori v225d]
          Length = 625

 Score = 63.1 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 77/224 (34%), Gaps = 37/224 (16%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAV--------- 68
           + II G+++  L+ L +   + + +I+ DPPYN + +  +Y PD+   D           
Sbjct: 102 NAIIIGDNLDALKLLKSAYSEKIKMIYIDPPYNTKSDDFIY-PDNFRQDYQKILREVGLM 160

Query: 69  -TDSWDKFSSFEA---------------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
            TD   +    E+               + +F    L   R +LK +G +++    +   
Sbjct: 161 ETDENGEEIESESLKFFKNIQGSRTHSGWLSFMLPRLKLARDLLKEDGAIFISIDDNECA 220

Query: 113 RIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF----N 167
            +  +   +           RK+    N         HE L+  +     K YT      
Sbjct: 221 NLKILCDEIFGEDNFVGDFIRKTKSTTNDAKIGLNYQHEFLLCYAKD---KNYTNLLGGE 277

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
            D  K  N D      W +   +     + ++   ++P  K   
Sbjct: 278 KDLDKYKNPDNDPNGAWTLGNPTKPGYAKIQNFPLINPHTKAIE 321



 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 17/98 (17%)

Query: 207 QKPEALLSRILVSST--KPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQD-- 256
            K    + +I++ ST     DIILD F GSGT+     +L       R FI +++ ++  
Sbjct: 405 PKGVEFMKKIILHSTTLNSNDIILDFFAGSGTTAQAVMELNAEDEGNREFILVQIDEEIK 464

Query: 257 ------YIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
                   D   K + S +P+ + ++T    KR   ++
Sbjct: 465 EDKSKSAYDFCKKELKSAKPVIS-DITTERVKRAAQKI 501


>gi|188575175|ref|YP_001912104.1| hypothetical protein PXO_04295 [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188519627|gb|ACD57572.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 377

 Score = 63.1 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 52/164 (31%), Gaps = 7/164 (4%)

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           R        L++ +     +              D   +  W  P    +  +   D   
Sbjct: 179 RHASGDLYKLVFFAMPVCVRAGMRLPMCCGNPPMDEFDQRSWWTPTLDDAAWVLPADLRA 238

Query: 203 LHPTQKPE----ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
             P    +      +   +   ++PG+ + DPF G G++   A    R+  G+E+     
Sbjct: 239 ADPLNGRDCGWFNQMRPFVRHFSRPGEQVFDPFCGFGSTLPAAALEGRNAHGMEIDPARA 298

Query: 259 DIATKRI---ASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLI 299
            +A  R+   A+V P G  +      +     V     V R  +
Sbjct: 299 QLARARLQQHAAVAPSGGRQPGRYGARCAARPVPDQRAVFRLAL 342


>gi|147676551|ref|YP_001210766.1| adenine specific DNA methylase Mod [Pelotomaculum thermopropionicum
           SI]
 gi|146272648|dbj|BAF58397.1| adenine specific DNA methylase Mod [Pelotomaculum thermopropionicum
           SI]
          Length = 558

 Score = 63.1 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 6/115 (5%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVS 219
             K Y ++        +   +  +  I   +G E       +      K   L+ R +  
Sbjct: 300 YRKDYLYDESGDVTVTKSKALWVEKNINNENGKEVCNEIFLKCPFDFPKSPELVKRCIKL 359

Query: 220 STKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYIDIATKRIASV 268
            +   DI+LD F GSGT+     +L       R FI +E +    +I  +R+  V
Sbjct: 360 GSGNTDIVLDSFAGSGTTAHAVLELNKEDGGNRKFILVECEDYADEITAERVRRV 414



 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 55/148 (37%), Gaps = 13/148 (8%)

Query: 21  DKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW----- 72
           + II G+++  L+ L       V  I+ DPPYN      +Y  + ++   +   W     
Sbjct: 41  NLIIHGDNLKALKALLPNYAGKVKCIYIDPPYNTGNEKWVY--NDNVNSPMMQEWLGKVV 98

Query: 73  --DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDI 129
             +  +  + +       L   R +L+ +G ++V    + +  +  ++  +         
Sbjct: 99  DREDLTRHDKWLCMMMPRLKLLRELLREDGVIFVSIDDNEVHHLRMLMDEVFGDQNFIAC 158

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASP 157
           +  + NP      R     HE ++  + 
Sbjct: 159 IVVQLNPRGRTLDRFLAKTHEYILLYAK 186


>gi|332674241|gb|AEE71058.1| DNA (cytosine-5-)-methyltransferase domain protein [Helicobacter
           pylori 83]
          Length = 379

 Score = 62.7 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 6/118 (5%)

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP------ICSGSERLRNKDGEKLHP 205
           +I  S           Y      N+      ++ +         +  +     +  K HP
Sbjct: 87  IIGKSKQVIQLENGKKYHLKNKLNDLSGAEWNYFLNSVLCTRYKTSGKDSYAHEIRKEHP 146

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           + KP  L+  I+   TK  +++ D F G G +   +    R  IG ++   Y DI  K
Sbjct: 147 SPKPPQLMRDIISFFTKENELVFDYFAGVGGTLLGSSLCNRKAIGFDLSDRYKDIYMK 204



 Score = 36.9 bits (84), Expect = 5.8,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 16/99 (16%)

Query: 22  KIIKGNSISVLEK-------LPAKSVDLIFADPPYNLQLN--------GQLYRPDHSLVD 66
           K I G+S+ +L+           +   LI  DPPY   L+         Q      +   
Sbjct: 215 KFICGDSLELLKNNNLMQNLFKNELAGLILIDPPYGDMLSRPKTGETLKQKKDTSPTPFT 274

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI 105
            + +      +++ +    +  +    + LK  G L V 
Sbjct: 275 NLKNDLGNM-NWQEFLEKFKQIVGCSIKYLKKGGHLVVF 312


>gi|317014936|gb|ADU82372.1| putative type III restriction enzyme M protein (type III adenine
           specific DNA methyltransferase (Mod)) [Helicobacter
           pylori Gambia94/24]
          Length = 460

 Score = 62.7 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 67/164 (40%), Gaps = 22/164 (13%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSL--------VDAV 68
           K  +IKG+++  L+ L    ++ + +I+ DPPYN +    +Y  D S         +D  
Sbjct: 89  KHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNENFIYGDDFSQSNEEVLKTLDYS 148

Query: 69  TDSWD------KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL- 121
            +  D         S   + +F    LL  R +L+ +G +++    +   ++  +   + 
Sbjct: 149 KEKLDYIKNLFGLKSHSGWLSFMYPRLLLARDLLQQDGVIFISIDDNEAAQLKLLCDEIF 208

Query: 122 --NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
               ++   +  +K N    F G+   +  E ++    S   KG
Sbjct: 209 GEGNFVACAVWHKKDNAS--FLGKDIIDLLEYVLIYKKSVSFKG 250



 Score = 41.9 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 208 KPEALLSRILVSST--KPGDIILDPFFGSGTSGAVAKKLR 245
           KP  L+ + + + T     DIILD F GSGT+     +  
Sbjct: 405 KPSKLIKKFIRNVTDINSNDIILDFFAGSGTTAHAVLESN 444


>gi|296445816|ref|ZP_06887768.1| DNA methylase N-4/N-6 domain protein [Methylosinus trichosporium
           OB3b]
 gi|296256644|gb|EFH03719.1| DNA methylase N-4/N-6 domain protein [Methylosinus trichosporium
           OB3b]
          Length = 411

 Score = 62.7 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 1/106 (0%)

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
            + ++R  +   E  +       L    +   T PGD + DPF G GT+   A    R  
Sbjct: 53  WTSAQRQAHSIHEISYRACFKPQLPEFFISRLTAPGDAVFDPFMGRGTTPVQAALQGRRP 112

Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLV 294
           +G ++    + +   R+ S   L  IE  +    R E  +    L+
Sbjct: 113 VGSDINPLSVLLTRPRL-SPPSLPEIERRLSEIAREEGEIEREDLL 157


>gi|283955232|ref|ZP_06372733.1| hypothetical protein C414_000430035 [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283793269|gb|EFC32037.1| hypothetical protein C414_000430035 [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 502

 Score = 62.7 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 73/225 (32%), Gaps = 31/225 (13%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPD-------- 61
                  K+ IIKG+++  L+ L +   + + +I+ DPPYN + +  +Y  D        
Sbjct: 87  SKDAESTKNTIIKGDNLHALKLLKSAYYEKIKMIYIDPPYNTKNDKFIYNDDFVKEHKKL 146

Query: 62  ----------------HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI 105
                            S +     +     S  A+  F    L   R +L+ +G +++ 
Sbjct: 147 LMEVGLLEIDEEGEEIRSEILNFFINQKGDRSHSAWLGFMLPRLKLARDLLREDGVIFIS 206

Query: 106 GSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
              +    +  +   +           RK+    N         HE L+  +     K +
Sbjct: 207 IDDNEQANLKILCDEIFGEENFVADFIRKTKSTTNDAKVGLNYQHEFLLCYAKD---KNF 263

Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
              +   K  ++     +D      S     ++ D +  +   K 
Sbjct: 264 VNLFGGQKDLSKYKNPDNDPNGAWVSSDPTAKSGDIKTGYFAVKN 308



 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 16/97 (16%)

Query: 207 QKPEALLSRILVSSTKPG-DIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQD--- 256
            K    +  I+  +T    D ILD F GSGT+     +L       R FI +++ +    
Sbjct: 399 PKSVDFIKEIINHATNDNSDYILDFFAGSGTTAQAVIELNAEDNGNRKFILVQLDEPINE 458

Query: 257 -----YIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
                  D   K + S  P+ + ++T+   KR   ++
Sbjct: 459 KKSKVAYDFCKKELGSKNPVIS-DITIERVKRAGEKI 494


>gi|161506656|ref|YP_001576604.1| DNA methylase [Lactobacillus helveticus DPC 4571]
 gi|160347645|gb|ABX26319.1| DNA methylase [Lactobacillus helveticus DPC 4571]
          Length = 608

 Score = 62.7 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 71/182 (39%), Gaps = 25/182 (13%)

Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL--IWASPSPKAKGYT-FNY 168
           +R+ T+L++         +  + +       +R+Q   E +  +W     + K  T F  
Sbjct: 279 YRLATILKSNRGINSRKTMNFEFHGYKPSDTQRWQAGKEKIQELWDRNQIEFKNGTPFRR 338

Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNK------DGEKLHPTQKPEALLSRILVSSTK 222
                 NE  Q   ++++P  +G+     K        +    T KP  L+ R++ ++TK
Sbjct: 339 YFKDEENEISQPFYNFMLPSVTGTAESGKKRLNDLLGNKHGFDTVKPVPLIQRLIAATTK 398

Query: 223 PGDIILDPFFGSGTSGAVAKK------LRRSFIGIEMKQD----------YIDIATKRIA 266
             D+I+D F GS T+     +        R +I +++               ++  +RI 
Sbjct: 399 DNDLIMDFFAGSSTTAEAVLQQNLKDNFNRKYILVQLNDKQESVNSSFSSVTELGEERIK 458

Query: 267 SV 268
            V
Sbjct: 459 KV 460



 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 51/138 (36%), Gaps = 21/138 (15%)

Query: 5   NSLAINENQNSIFEW---KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLY 58
             + +  N+     W   K+  I+G+++ VL+ L    +  V +I+ DPPYN   +    
Sbjct: 75  EDITLIGNKEKSENWNKTKNVYIEGDNLEVLKLLQKSYSDKVQMIYIDPPYNTGNDFIYK 134

Query: 59  RPDHSLVDAVTDSWDKFSS---------------FEAYDAFTRAWLLACRRVLKPNGTLW 103
                   +  +  ++  S                 A+       L   RR+LK +G ++
Sbjct: 135 DDFSDSYKSYLEQTNQIDSNGNATTTQKEARGRIHTAWLNMMYPRLKLARRLLKESGVIF 194

Query: 104 VIGSYHNIFRIGTMLQNL 121
           +    H    +  ++  +
Sbjct: 195 ISIDDHEQANLVKIMNEI 212


>gi|268611119|ref|ZP_06144846.1| Type III restriction-modification system methyltransferase
           [Ruminococcus flavefaciens FD-1]
          Length = 625

 Score = 62.7 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 68/208 (32%), Gaps = 29/208 (13%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           I+G+++ VL+ L       V +I+ DPPYN    G  +  +    +   D  D+   F+ 
Sbjct: 102 IEGDNLDVLKLLQETYLGKVKMIYIDPPYNT---GNDFVYNDDFAENTEDYLDRSGQFDE 158

Query: 81  ------------------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                             +       L   + +L  +G +++    + I  +  +   + 
Sbjct: 159 EGNRLVLNTESNGRFHTDWLNMIYPRLRLAKDLLTDDGVIFISIDENEIQNMRKICDEIY 218

Query: 123 FWILNDIVWRKSN-PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY----DALKAANED 177
                           P  + R F N +E ++    + +               +  N D
Sbjct: 219 GETNFISQLGWQKVYSPKNQARYFSNDYEFILCYCRNIEFFKLGMLPRTAEMNARYKNPD 278

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHP 205
              R DW    C G+   +N   + + P
Sbjct: 279 NDPRGDWKPGDCVGNGVRKNGYYDVISP 306



 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
             T KP  L+  + +  +   DIILD F GS T+     +L       R F+ +++
Sbjct: 391 FDTPKPVKLIKMLSILGSGEDDIILDFFAGSATTAQSILELNAEESTHRKFVLVQL 446


>gi|254169106|ref|ZP_04875943.1| hypothetical protein ABOONEI_48 [Aciduliprofundum boonei T469]
 gi|197621945|gb|EDY34523.1| hypothetical protein ABOONEI_48 [Aciduliprofundum boonei T469]
          Length = 273

 Score = 62.7 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 5/105 (4%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           WL P    S     K      P      +  + ++  TK G+ +LD F G GT+   AK+
Sbjct: 39  WLFPSRDNSGMHTPKYHGNFIP-----QIPRQAMLRFTKRGEWVLDTFAGLGTTLIEAKR 93

Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
           L R+ IGIE+ ++  ++A + I   +   N+   ++ G  T+  +
Sbjct: 94  LGRNAIGIEIDENTANMAKELIEQEENPYNVYTDIIIGDSTKEEI 138


>gi|295107677|emb|CBL05220.1| Adenine specific DNA methylase Mod [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 647

 Score = 62.7 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 56/149 (37%), Gaps = 19/149 (12%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY----RPDHSLVDAVTDSWDK-- 74
           I+G+++  L+ +       V  I+ DPPYN   +  +Y    R + +  + ++D W    
Sbjct: 101 IEGDNLDALKIMKETYAGKVRFIYIDPPYNTGKDAFIYPDSFRQNDADYEQLSDEWANGY 160

Query: 75  --FSSFEAYDAFTRAW-------LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFW 124
              ++ E Y  F   W       L+  +  L  +G + +    H +  +  +   +    
Sbjct: 161 QMVTNTEGYGKFHSVWCSMIYQRLVLAKDCLSSDGIICISIDEHELMNLIKICDEIFGAS 220

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           +   I             R  +N +E ++
Sbjct: 221 MRVGIFKWNKTSKAPTLSRYIRNKYEYVL 249



 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 76/250 (30%), Gaps = 35/250 (14%)

Query: 103 WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
           +  G  +       ++++      +  +  +          R  N    L          
Sbjct: 302 YGDGDKYVTLHKDFIVRD-GINANDIDITGRFKWSQETLNDRVSNGQRLLFKNPKFVTLY 360

Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK 222
            Y  +     A ++ +      ++        +++  G  L    KP +L+  ++     
Sbjct: 361 YYLDSTGKYIAPSDLLNKDECGVLRNDEAFNEVKDLFGFPLFEYTKPASLVKYLIRMIPD 420

Query: 223 PGDIILDPFFGSGTSGAVAKKLRR----------------SF-IG-----------IEMK 254
               +LD F GSGT+     +L R                   IG            E+ 
Sbjct: 421 DSFTVLDFFSGSGTTAQAVFELNREDGGGERSSILVQIPDKCPIGSNAAENGFKTICEIG 480

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL-VERG-----LIQPGQILTNA 308
           ++ I +  K I +     N +L +    +  P + F +L ++        + PG+    +
Sbjct: 481 EERIRLVGKNIKAQIDKENEQLELGAEPKPYPDLGFRVLRIDSSNFKDFYLTPGETAQES 540

Query: 309 QGNISATVCA 318
             + +  V  
Sbjct: 541 LFDFADNVKE 550


>gi|332674306|gb|AEE71123.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori 83]
          Length = 459

 Score = 62.7 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 69/185 (37%), Gaps = 18/185 (9%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSL--------VDAV 68
           K  +IKG+++  L+ L    ++ + +I+ DPPYN + +  +Y  D S         +D  
Sbjct: 89  KHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNDNFIYSNDFSQSNEEVLKTLDYS 148

Query: 69  TDSWDKFSSF------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL- 121
            +  D   +         + +F    LL  + +LK +G +++    +   ++  +   + 
Sbjct: 149 KEKLDYIKNLFGSKCHSGWLSFMYPRLLLAKDLLKQDGVIFISIDDNEAAQLKLLCDEIF 208

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
                   + R +        +  +N    L +   S   K    + +     +E    R
Sbjct: 209 GEGNFVAEMPRLTKKAGKSTNQIAKNHDYVLCYQKNSINFKQIDIDENDYSLKDEFYNER 268

Query: 182 SDWLI 186
             + +
Sbjct: 269 GGYKL 273



 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 44/128 (34%), Gaps = 3/128 (2%)

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
           +  +  W      +  +N     +  R      T    +    +K Y   Y         
Sbjct: 318 IDWVWRWSKAKFDFGLANGFVEVKNNRIYTKTYT---KAKISDSKPYKIEYFNRTKNISS 374

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           ++   +      S  +     + + +    KP  L+S ++  +T+  DIILD F GSGT+
Sbjct: 375 IEFLDNKYSNDMSNKKLQSIFNVKNIFDYSKPVELISFLINQTTEKNDIILDFFAGSGTT 434

Query: 238 GAVAKKLR 245
                +  
Sbjct: 435 AHAVLESN 442


>gi|206895852|ref|YP_002247708.1| putative DNA methylase [Coprothermobacter proteolyticus DSM 5265]
 gi|206738469|gb|ACI17547.1| putative DNA methylase [Coprothermobacter proteolyticus DSM 5265]
          Length = 327

 Score = 62.7 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 5/79 (6%)

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
            W  P          K      P      +   +++  +   D++LD F GSGT+   AK
Sbjct: 101 VWGFPDRGDWATHSGKYRGNWSPY-----IPRNVILRYSNENDVVLDQFVGSGTTLVEAK 155

Query: 243 KLRRSFIGIEMKQDYIDIA 261
            L R  +G+++  D + +A
Sbjct: 156 LLGRRGLGVDINPDAVKLA 174



 Score = 38.8 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 47/153 (30%), Gaps = 32/153 (20%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G++ + L+ +   S+DLI   PPY             S +   +D+ +   S     
Sbjct: 189 VHIGDARN-LDFVKDSSIDLICTHPPY-------------SNIIKYSDNIEGDLSHYDIP 234

Query: 83  AFTRA---WLLACRRVLKPNGTL-WVIGSYHNI-------FRIGTMLQNLNFWILNDIVW 131
            F +          RVLK       ++G            FR+  +       +   ++ 
Sbjct: 235 EFLKEMYKVASESYRVLKRGRFCAVLMGDTRRKGNIIPLGFRVMEVFCKAGLTLKEIVIK 294

Query: 132 RKSNPMPNFRGRRFQ-------NAHETLIWASP 157
            + N       ++          AHE L     
Sbjct: 295 EQHNCTSTGYWKKQSIKYNFLLIAHEYLFIFKK 327


>gi|115289075|gb|ABI85553.1| M.Hin1056ModP-2 [Haemophilus influenzae]
          Length = 411

 Score = 62.7 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 60/168 (35%), Gaps = 24/168 (14%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       + LI+ DPPYN   +G  Y              DKF +
Sbjct: 223 NLIIKGNNLIALHSLAKQFKGKIKLIYIDPPYNTGNDGFKY-------------NDKF-N 268

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSN 135
              +  F +  L   + +L  +G ++V    +    +  ++  +      +  I  + S 
Sbjct: 269 HSTWLTFMKNRLEIAKTLLADDGVIFVQCDDNEQAYLKILMDEVFGRENFVTTIHCQMST 328

Query: 136 PMPNFR-----GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
                      G   +NA   ++++    K       YD     +E  
Sbjct: 329 TQGMKVKAAQDGNIVKNAEYIIVFSKNGHKNIAINPLYDLRSEYDEHY 376


>gi|99034327|ref|ZP_01314363.1| hypothetical protein Wendoof_01000839 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 218

 Score = 62.7 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 53/165 (32%), Gaps = 15/165 (9%)

Query: 21  DKIIKGNS--ISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +I  G+S  +   +  L  K  D+   DPPYN+       R D  +++           
Sbjct: 62  HRIYCGDSCVVESFKAVLDDKMADITVCDPPYNVDYGSSQEREDKKILNDNQG------- 114

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            E Y+ F            K  G +++  S      +    +         I+W K++  
Sbjct: 115 -EKYELFLYDICSNILAYTK--GAIYICISSSEFSTLQKAFEEAGGKWSTFIIWAKNHFT 171

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
                   Q  +E +++   S   + +    +       D  + +
Sbjct: 172 LGRSDY--QRQYEAMLYGWKSGNKREWHGGRNQSDLWFYDKPIHN 214


>gi|218263848|ref|ZP_03477817.1| hypothetical protein PRABACTJOHN_03507 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222447|gb|EEC95097.1| hypothetical protein PRABACTJOHN_03507 [Parabacteroides johnsonii
           DSM 18315]
          Length = 603

 Score = 62.7 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 56/145 (38%), Gaps = 11/145 (7%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
             +I+G+++  L  L       +D+I+ DPPYN      +Y       D+  D  D +  
Sbjct: 77  HILIEGDNLEALATLAYTHEGKIDVIYIDPPYNTGNKDFIYN------DSYVDKEDSYRH 130

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNP 136
            + + +F    L   +++L  +G +++    +   ++  +   + N   +  I       
Sbjct: 131 SK-WLSFMSRRLKIAKKLLSEHGVIFISIDDNEQAQLKLLCDEIFNNNFVGMISRATGTT 189

Query: 137 MPNFRGRRFQNAHETLIWASPSPKA 161
                G   +     L+++S +   
Sbjct: 190 TGQDTGSLGKACDYILVYSSKNNYV 214



 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 45/127 (35%), Gaps = 8/127 (6%)

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
           Q   + L++       +   +     +   +        +         L+N    K   
Sbjct: 290 QMKKDNLLYFKKDKNNEWKVYYKFYSENKVKRPSNFWQDIEGNKKAQIELKNILESKKFD 349

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYI- 258
           T KP  L+ +IL  +     IILD F GSGT+     +L       R  I +   ++ I 
Sbjct: 350 TPKPTDLIRKILGLANSSHSIILDFFAGSGTTLHATMQLNVEDGGHRQCILVTNNENNIC 409

Query: 259 -DIATKR 264
            ++  +R
Sbjct: 410 EEVTYER 416


>gi|261866847|ref|YP_003254769.1| adenine specific DNA methylase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412179|gb|ACX81550.1| adenine specific DNA methylase [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 546

 Score = 62.7 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 62/179 (34%), Gaps = 15/179 (8%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQL---- 53
           + +K      EN +      + +I G+++  L+ L  K    ++ I+ DPPYN       
Sbjct: 23  LLEKKYTYKLENVHHKNNEDNILIHGDNLLALKSLLPKYEGKINCIYIDPPYNTGKTPED 82

Query: 54  NGQLY-------RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
            G  Y       R +  L D V    +  +  + +       L    ++L  +G +++  
Sbjct: 83  GGWTYNDNVSDPRIEKWLGDVVGKEGEDLTRHDKWLCMMYPRLKIMEKLLHEDGVIFISI 142

Query: 107 SYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
               +  +  +   +  +    +    +    P    +  ++  + ++        K +
Sbjct: 143 DDTELAHLRLVCDEIFGYQNFIECFCWEKTTTPASLSKTSRSNIDYILTYQKKNTQKIF 201



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 70/181 (38%), Gaps = 41/181 (22%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYIDIA 261
           KP +L+S ++   +    IILD F GSGT+      L       R FIGIEM     +I 
Sbjct: 343 KPYSLVSFLINIISNKDAIILDGFMGSGTTAHAVLNLNAKDSGNRQFIGIEMMDYAENIT 402

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
            +RI  V  +        T K T    +F  +        G+ L ++          DG 
Sbjct: 403 AERIRRV--INGYGSKAETQKGTGGGFSFYTI--------GETLFDS----------DGN 442

Query: 322 LISGTELGSI-----H--RVGAKVSGSET--CNGWNF-----WYFEKLG-ELHSINTLRI 366
           L +  +L SI     H  ++        +    G N+     +Y+E       S++ LR 
Sbjct: 443 LNNQADLISIREYIAHSEKLETVFDNHTSGYFLGLNYQTAYIFYYESDQVTTLSLDFLRS 502

Query: 367 L 367
           L
Sbjct: 503 L 503


>gi|308183573|ref|YP_003927700.1| putative RNA methylase [Helicobacter pylori PeCan4]
 gi|308065758|gb|ADO07650.1| putative RNA methylase [Helicobacter pylori PeCan4]
          Length = 379

 Score = 62.7 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 6/118 (5%)

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP------ICSGSERLRNKDGEKLHP 205
           +I  S           Y      N+      ++ +         +  +     +  K HP
Sbjct: 87  IIGKSKQVVQLENGKKYHLKNKLNDLSGAEWNYFLNSVLCTRYKTSGKDSYAHEIRKEHP 146

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           + KP  L+  I+   TK  +++ D F G G +   +    R  IG ++   Y DI  K
Sbjct: 147 SPKPPQLMRDIISFFTKENELVFDYFAGVGGTLLGSSLCNRKAIGFDLSDRYKDIYMK 204



 Score = 39.6 bits (91), Expect = 0.82,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 14/98 (14%)

Query: 22  KIIKGNSISVLEK-------LPAKSVDLIFADPPYNLQL----NGQLYRPDHSLVDAVTD 70
           K I G+S+ +L+           +   LI  DPPY   L     G+  R           
Sbjct: 215 KFICGDSLELLKNNNLMQNLFKNELASLILIDPPYGDMLSRPKTGETLRQKKDTSPTPFT 274

Query: 71  SWDKFSSFEAYDAFTRAW--LLACR-RVLKPNGTLWVI 105
           +         +  F   +  ++ C  + LK  G L V 
Sbjct: 275 NLKNDLGNMNWQEFLEKFKQIVECSIKYLKKGGHLIVF 312


>gi|317182725|dbj|BAJ60509.1| Type III DNA modification enzyme [Helicobacter pylori F57]
          Length = 438

 Score = 62.7 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 63/158 (39%), Gaps = 18/158 (11%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSL--------VDAV 68
           K  +IKG+++  L+ L    ++ + +I+ DPPYN + +  +Y  D S         +D  
Sbjct: 89  KHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNDNFIYSDDFSQSNEEVLKTLDYS 148

Query: 69  TDSWDKFSSF------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL- 121
            +  D  ++         + +F    LL  + +LK +G +++    +   ++  +   + 
Sbjct: 149 KEKLDYITNLFGSKCHSGWLSFMYPRLLLAKDLLKQDGVIFISIDDNEAAQLKLLCDEIF 208

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
                     RK+    N         HE L+  + + 
Sbjct: 209 GEGNFVADFIRKTKSTTNDAKTGVNYQHEFLLCYAKNK 246



 Score = 40.7 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 207 QKPEALLSRILVSSTKPG--DIILDPFFGSGTSGAVAKKLR 245
            K    + +I++ ST P   DIILD F GSGT+     +  
Sbjct: 384 PKGVEFMKKIILHSTTPNSNDIILDFFAGSGTTAHAVLESN 424


>gi|266618971|ref|ZP_06111908.1| adenine specific DNA methyltransferase [Clostridium botulinum Bf]
 gi|263529019|gb|EEZ28443.1| adenine specific DNA methyltransferase [Clostridium botulinum Bf]
          Length = 98

 Score = 62.7 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           QK   L   ++ + T  G  +LD   GS           R++I IE ++ + + A +RI 
Sbjct: 27  QKLVELYEYLIKTYTNEGGTVLDFTAGSCVLAEACINTNRNYICIEKEKKHCNEAKERIK 86


>gi|325915047|ref|ZP_08177376.1| DNA methylase [Xanthomonas vesicatoria ATCC 35937]
 gi|325538745|gb|EGD10412.1| DNA methylase [Xanthomonas vesicatoria ATCC 35937]
          Length = 357

 Score = 62.7 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%)

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           +   +   ++PG+ + DPF G G++   A    R+  G+E+      +A  R+ 
Sbjct: 45  MRPFVRHFSQPGEQVFDPFCGFGSTLLAAALEGRNAHGMEIDPARAQLARTRLQ 98


>gi|289667550|ref|ZP_06488625.1| hypothetical protein XcampmN_03337 [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 354

 Score = 62.7 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%)

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           +   +   ++PG+ + DPF G G++   A    R+  G+E+      +A  R+ 
Sbjct: 42  MRPFVRHFSQPGEQVFDPFCGFGSTLLAAALEGRNAHGMEIDPARAQLARTRLQ 95


>gi|78046293|ref|YP_362468.1| hypothetical protein XCV0737 [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78034723|emb|CAJ22368.1| conserved hypothetical protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 354

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 27/54 (50%)

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           +   +   ++PG+ + DPF G G++   A    R+  G+E+      +A  R+A
Sbjct: 42  MRPFVRHFSRPGEQVFDPFCGFGSTLLAAALEGRNAHGMEIDPARAQLARMRLA 95


>gi|158318454|ref|YP_001510962.1| putative RNA methylase [Frankia sp. EAN1pec]
 gi|158113859|gb|ABW16056.1| putative RNA methylase [Frankia sp. EAN1pec]
          Length = 292

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 2/94 (2%)

Query: 172 KAANEDVQMRSDWLIPICSGSERLRNK--DGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
            A        + W +       +  N+       HP +   AL   I+ + T+PGD+++D
Sbjct: 1   MADRHTPIPLTVWAVSQTHPRFQRLNRYTPESLAHPARMLPALARHIITTFTEPGDLVVD 60

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           P  G GT+   A  L R  +G+E +  +  I   
Sbjct: 61  PMCGIGTTLVEAAHLGRRALGVEYEPRWAGIGRA 94


>gi|115289042|gb|ABI85531.1| M.Hin1056ModP-2 [Haemophilus influenzae]
          Length = 409

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 60/168 (35%), Gaps = 24/168 (14%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       + LI+ DPPYN   +G  Y              DKF +
Sbjct: 219 NLIIKGNNLIALHSLAKQFKGKIKLIYIDPPYNTGNDGFKY-------------NDKF-N 264

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSN 135
              +  F +  L   + +L  +G ++V    +    +  ++  +      +  I  + S 
Sbjct: 265 HSTWLTFMKNRLEIAKTLLADDGVIFVQCDDNEQAYLKILMDEVFGRENFVTTIHCQMST 324

Query: 136 PMPNFR-----GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
                      G   +NA   ++++    K       YD     +E  
Sbjct: 325 TQGMKVKAAQDGNIVKNAEYIIVFSKNGHKNIAINPLYDLRSEYDEHY 372


>gi|217978104|ref|YP_002362251.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methylocella silvestris BL2]
 gi|217503480|gb|ACK50889.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methylocella silvestris BL2]
          Length = 631

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 72/218 (33%), Gaps = 19/218 (8%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN-------GQLYRP 60
           E   +  E ++  ++G+++ VL+ L       V LI+ DPPYN            +    
Sbjct: 91  EKSANFDEAENVFVEGDNLEVLKLLQKAYFGKVKLIYIDPPYNTGNEFIYPDNFTETLET 150

Query: 61  DHSLVDAVTDSWDKFSSFEA--------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
             +    V D   +FS+           +       L   R +L+ +G +++    + + 
Sbjct: 151 YLAYTGQVDDERKRFSTNTDQSGRYHSRWMNMMFPRLYLARNLLRDDGAIFISIDDNEVH 210

Query: 113 RIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
            +  ++  +         +  +    P    + F + H+ ++  + +             
Sbjct: 211 NLRALMDQIFGEENFVATIIWQKVYAPKNSAKFFSDDHDYILVYARNSDQWKPELLERTP 270

Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
           +          D   P  S +   RN  GE  +    P
Sbjct: 271 EQDALYKNPDKDQRGPWMSDNLTARNFYGEGSYEVTGP 308



 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 17/94 (18%)

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPG-DIILDPFFGSGTSGAVAKK------L 244
           ++ +  ++ E    + KP  L+ R++  +TK   DI+LD F GSGT+G    +      +
Sbjct: 382 NKYVPYEETENTLNSVKPVNLIRRMIKIATKSDGDIVLDFFAGSGTTGQAVIEQSLDDGI 441

Query: 245 RRSFIGIEMKQD----------YIDIATKRIASV 268
           RR FI +++ ++            D A  R+ +V
Sbjct: 442 RRRFIMVQLPEELPKPEANFKTISDFARARVKNV 475


>gi|227508918|ref|ZP_03938967.1| possible adenine specific DNA methylase [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
 gi|227191595|gb|EEI71662.1| possible adenine specific DNA methylase [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
          Length = 367

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 45/145 (31%), Gaps = 10/145 (6%)

Query: 23  IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD-------HSLVDAVTDSW 72
           II  +++  L+ L       VD I+ DPPYN      +Y  +         L   V    
Sbjct: 40  IIHADNLIALKSLLPQYEGKVDCIYIDPPYNTGNEKWVYNDNVNDPKFRKWLGQVVGKEG 99

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           +  S  + +       L    R+L  NG +++    +    +  +   +           
Sbjct: 100 EDLSRHDKWLCMMYPRLKLLARLLSSNGVIFISIDDNEFSNLKAICDEIFGHDNALGPII 159

Query: 133 KSNPMPNFRGRRFQNAHETLIWASP 157
           +            Q  HE +I    
Sbjct: 160 QDKGNAKNDTHNVQKNHEYIIAYRK 184


>gi|53712450|ref|YP_098442.1| methyltransferase [Bacteroides fragilis YCH46]
 gi|52215315|dbj|BAD47908.1| methyltransferase [Bacteroides fragilis YCH46]
          Length = 584

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 69/204 (33%), Gaps = 25/204 (12%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
             +I+G+++  L  L       +D+I+ DPPYN   N  +Y       D   D  D +  
Sbjct: 74  HILIEGDNLETLTALAYTHEGKIDVIYIDPPYNTGNNDFVYN------DKFVDKEDSYRH 127

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            + + +F    L   +++L   G +++    +   ++  +          +I    +   
Sbjct: 128 SK-WLSFMAKRLCIAKQLLSDKGVIFISIDDNEQAQLKLLCD--------EIFGENNFIA 178

Query: 138 PNFRGRRFQNA---HET-LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
              R RR   A   H    I        K Y    + + A  +D   R+    P      
Sbjct: 179 SCVRKRRDSQANLSHNISPIHEYVFIFCKRYDDLLNKIPAIIDDKDYRNPDNDPRGPYKT 238

Query: 194 RLRNKDGEKLHPTQKPEALLSRIL 217
                 G  ++    P     RI+
Sbjct: 239 MPCTNKGGAVYSVTTPTG---RII 259


>gi|213025360|ref|ZP_03339807.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Typhi str.
           404ty]
          Length = 175

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
             A  +  +      D +     G + + +  G+ +  T KP ALL +I+  +     ++
Sbjct: 61  MYAHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPTALLKKIIKLAIDKDGVV 120

Query: 228 LDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
           LD F GSGT+      L       R+FI   + Q
Sbjct: 121 LDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 154


>gi|296109108|ref|YP_003616057.1| DNA methylase N-4/N-6 domain protein [Methanocaldococcus infernus
           ME]
 gi|295433922|gb|ADG13093.1| DNA methylase N-4/N-6 domain protein [Methanocaldococcus infernus
           ME]
          Length = 305

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 11/111 (9%)

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
                 K    N++           R DW     +   R                 +   
Sbjct: 30  KDWKIKKFQPDNFELEPTNVWSFPKRGDWATHYLNSKYRGN-----------WAPQVARN 78

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           +++  +K G+ +LDPF GSGT+   AK L R+ IG+++ +D + +   R+ 
Sbjct: 79  LILRYSKEGETVLDPFVGSGTTLIEAKLLFRNAIGVDINRDAVMLTLDRLR 129



 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 61/189 (32%), Gaps = 24/189 (12%)

Query: 5   NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL 64
           N L INE   +   W  K+  G++ + L+K+  +S+DLI   PPY       +    ++ 
Sbjct: 133 NPLDINEKPKT---WI-KVFVGDARN-LDKIEDESIDLIATHPPY-------VNIVKYTK 180

Query: 65  VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNI-------FRIGT 116
              V     K  S E +    R       RVLKP      +IG            FR+  
Sbjct: 181 KSEVDGDLSKVRSVEDFVNEMRKVAREFFRVLKPGRYCAILIGDTRRNKHHVPVSFRVMQ 240

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
                 F +  DI+  + N       ++       L+          + F          
Sbjct: 241 AFLEEGFILKEDIIKIQHNMRVTPLWKKRSQELNFLL----LKYEHLFVFRKPESDEKLS 296

Query: 177 DVQMRSDWL 185
             +    W 
Sbjct: 297 KFKESIKWW 305


>gi|21323668|dbj|BAB98295.1| Adenine specific DNA methylase Mod [Corynebacterium glutamicum ATCC
           13032]
          Length = 280

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 61/171 (35%), Gaps = 11/171 (6%)

Query: 38  KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK 97
            S+D I+ DPPYN       Y  D+   D      D +   + + AF    L  CR +++
Sbjct: 55  HSIDAIYIDPPYNTGARDWKYDNDYVASD------DDYRHSK-WLAFMERRLKICRELMR 107

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
            + TL      H + R+G +L  L       +V   +NP    +G       E   +   
Sbjct: 108 SDATLVATIDEHEVNRLGVLLDQLFPESTRQLVTIVNNPKGVTQG-YLSRVEEYAFFVFG 166

Query: 158 SPKAKGYTFN---YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
                G   +        A  E    R  W   + SG + LR    +  +P
Sbjct: 167 PDARIGSVDDDLLTHRDMADAEGELQRPRWKGLLRSGDDSLRADRKDMFYP 217


>gi|217962618|ref|YP_002341190.1| DNA methylase domain protein [Bacillus cereus AH187]
 gi|217065650|gb|ACJ79900.1| DNA methylase domain protein [Bacillus cereus AH187]
          Length = 643

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 81/235 (34%), Gaps = 35/235 (14%)

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           ++   D   D   K+   +  D  + ++  +    L+ +G ++  G          + + 
Sbjct: 236 NYKYEDEFVDERGKYKLNQTLDYDSLSYSKSLDYPLEIDGEIFYPGGSKEKH----LERQ 291

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
                  D  WR +  M  +           +I       A+ YT  Y   K      + 
Sbjct: 292 SGKHKRADWAWRWNKEMFKYGYENG----FVVIKRKKDGTARIYTKTYLNAKIEKRKSKG 347

Query: 181 RSDWLIPICSGSE----------RLRNKDGEKL---------HPTQKPEALLSRILVSST 221
            +++ I     ++          +  N + +K              KP  L+ R++    
Sbjct: 348 MTEYFIKYVHKTKPLSSIELTLNKYSNDNAKKDLSVFNLQDEFDYSKPVDLIKRLISCHY 407

Query: 222 KPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYI--DIATKRIASV 268
            P   +LD F GSGT+G    +L       R FI     Q+ I  +I  KR++S+
Sbjct: 408 NPDAYVLDFFAGSGTTGQAILELNKERGGNRKFILCTNNQNNICREITYKRVSSL 462



 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 68/211 (32%), Gaps = 23/211 (10%)

Query: 20  KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDH-SLVDAVTDSWDKF 75
            + +++G++++ LE L       VD+++ DPPYN       Y  D+    DA   S    
Sbjct: 88  MNFLLEGDNLASLELLSKTHKGLVDVVYIDPPYNTGNTDFTYDDDYVEKEDAYKHS---- 143

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKS 134
                + +F +  L     V+  +G L++         +  +   +         + R++
Sbjct: 144 ----KWLSFMKRRLELAHEVMSNDGILFMSIDDKEQAALKILTDEIFGEDNFIVALPRQT 199

Query: 135 NPMPNFRGRRFQNAHETLIWAS----------PSPKAKGYTFNYDALKAANEDVQMRSDW 184
                  G   +N    L++                   Y   +   +   +  Q     
Sbjct: 200 KKSGKTTGSFSKNHDYVLVYTKLNKDVFVMEEHIDDNYKYEDEFVDERGKYKLNQTLDYD 259

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
            +      +     DGE  +P    E  L R
Sbjct: 260 SLSYSKSLDYPLEIDGEIFYPGGSKEKHLER 290


>gi|119510950|ref|ZP_01630072.1| Site-specific DNA-methyltransferase (adenine-specific) [Nodularia
           spumigena CCY9414]
 gi|119464389|gb|EAW45304.1| Site-specific DNA-methyltransferase (adenine-specific) [Nodularia
           spumigena CCY9414]
          Length = 633

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 72/199 (36%), Gaps = 29/199 (14%)

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           ++     +I   ++      + R  QN  +  +W   + + K   +     +       +
Sbjct: 309 IHPKTEEEIWPSRTAVWRYSKARHQQNVQDNRVWWGLNQENKVPAYKRFLSEVGG---II 365

Query: 181 RSDWLIPICSGSERLRNKDGEKLHP-------TQKPEALLSRILVSSTKPG--DIILDPF 231
              W      G      K  + L P       T KP  L+ RI+  ST     DIILD F
Sbjct: 366 SDTWWQHKDVGHNDEAKKQIKSLFPEASQSFDTPKPTRLIKRIVELSTNTDSTDIILDFF 425

Query: 232 FGSGTSGAVAKKLR------RSFIGIEM-----KQDYI---DIATKRI-ASVQPLGNIEL 276
            GS T+     +L       R FI I++        +    DI+ +RI  S+Q + N   
Sbjct: 426 AGSATTAQAVLELNHEDTGDRRFILIQLPQKTYNPQFTTISDISKERIRRSIQKIKNSAN 485

Query: 277 --TVLTGKRTEPRVAFNLL 293
               L  + T   + F +L
Sbjct: 486 GKLPLQNRETPEDLGFKVL 504



 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 89/256 (34%), Gaps = 46/256 (17%)

Query: 2   SQKNSLAINENQNSIFEW-KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQL 57
             + +L  + N++  F+  ++  I+G+++ VL+ L    +  V +I+ DPPYN       
Sbjct: 74  PSRATLKPDRNESVDFDHTQNLFIEGDNLEVLKLLRNSYSGQVKMIYIDPPYNTG----- 128

Query: 58  YRPDHSLVDAVTDSWDKFSSF----------------------EAYDAFTRAWLLACRRV 95
              D    D  TD+ D +                          A+ +     L   R++
Sbjct: 129 --NDFIYPDNYTDTLDNYLELTGQKDSEGNLQTSNPETSGRYHSAWLSMMYPRLFLARQL 186

Query: 96  LKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
           LK +G ++V    H +  +  ++  +         V  +    P      F   H+ ++ 
Sbjct: 187 LKEDGVIFVSIDDHEVHNLRLLMNEIFGEENFVACVCWQKKYAPANDTVDFSATHDFILV 246

Query: 155 ASPSPKAKG------YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
            S   +              +  +  N+  +   +    +   S+ L NK  E     Q+
Sbjct: 247 YSKQRQFLDSGKPIALIGRMERTEEQNKLYKNPDNDPRGLWKASDYLCNKSAE-----QR 301

Query: 209 PEALLSRILVSSTKPG 224
           P  L   I+   T+  
Sbjct: 302 P-NLYYPIIHPKTEEE 316


>gi|312601356|gb|ADQ90611.1| Putative type III restriction-modification system: methylase
           [Mycoplasma hyopneumoniae 168]
          Length = 593

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 73/237 (30%), Gaps = 19/237 (8%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKL-----------PAKSVDLIFADPPYN---LQLN 54
           ++   N   +  + +I G +   L+ L                D+I+ DPPYN    + +
Sbjct: 82  LSFKFNENNQNPNTLIIGENYDGLKNLLVIERERERERERGGFDIIYIDPPYNTEATKND 141

Query: 55  GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI 114
           G     +   + A    +    S   +       L   R +LK +G ++V         +
Sbjct: 142 GNSIANEKDDIKASKFIYRDKFSRNGWLNLMNERLKLARDLLKEDGIIFVSIDDAEQAYL 201

Query: 115 GTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
             ++  +             SN             HE L+          + FN      
Sbjct: 202 KVLMDEIFGEENFVANFPFISNLSGRQVNTNLALCHEYLLLYKK----NNFIFNKIDKDY 257

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
           AN  + +       +    +   NK+     P QK +     IL  + +  +   +P
Sbjct: 258 ANNFMPIVYPERSNVIFNEDPDVNKEIYDNSPEQKEDYSTQYILRDNLENSNGEFNP 314



 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%)

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
            ++ ++  EK+    K  AL+  ++         +LD F GSGT+G    +L 
Sbjct: 424 NKIFSESSEKVFNFPKSTALIEYLINLHPNKNARVLDFFAGSGTTGQAVLELN 476


>gi|308178020|ref|YP_003917426.1| site-specific DNA-methyltransferase (adenine specific)
           [Arthrobacter arilaitensis Re117]
 gi|307745483|emb|CBT76455.1| putative site-specific DNA-methyltransferase (adenine specific)
           [Arthrobacter arilaitensis Re117]
          Length = 296

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 61/171 (35%), Gaps = 11/171 (6%)

Query: 38  KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK 97
            S+D I+ DPPYN       Y  D+   D      D +   + + AF    L  CR +++
Sbjct: 71  HSIDAIYIDPPYNTGARDWKYDNDYVASD------DDYRHSK-WLAFMERRLKICRELMR 123

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
            + TL      H + R+G +L  L       +V   +NP    +G       E   +   
Sbjct: 124 SDATLVATIDEHEVNRLGVLLDQLFPESTRQLVTIVNNPKGVTQG-YLSRVEEYAFFVFG 182

Query: 158 SPKAKGYTFN---YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
                G   +        A  E    R  W   + SG + LR    +  +P
Sbjct: 183 PDARIGSVDDDLLTHRDMADAEGELQRPRWKGLLRSGDDSLRADRKDMFYP 233


>gi|308189844|ref|YP_003922775.1| DNA methylase - type II R/M system [Mycoplasma fermentans JER]
 gi|307624586|gb|ADN68891.1| putative DNA methylase - type II R/M system [Mycoplasma fermentans
           JER]
          Length = 396

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 35/81 (43%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +    P  L    +   TK  D ++D   G GT+   ++KL R F+G ++      ++  
Sbjct: 37  YLAMFPVELPLYFIKKYTKENDTVMDNLSGRGTTAYASRKLNRKFVGNDLNPYAFVLSKS 96

Query: 264 RIASVQPLGNIELTVLTGKRT 284
           ++ ++  +  IE  +   K  
Sbjct: 97  KLINISNIEKIEKRIKELKNK 117



 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 57/135 (42%), Gaps = 22/135 (16%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY-- 58
           +  K  + +++N  SIF++ + +   NS++ L+     SVDL+   PPY   ++      
Sbjct: 228 LKIKWEIFLSKNYESIFKYWNSL---NSLNFLK---NNSVDLVITSPPYLSLVDYTKSNW 281

Query: 59  ---------RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW-VIGSY 108
                    + +      ++DS D     + Y  F + +L+     LKP   +  VIG  
Sbjct: 282 LRLWLLGFEKNNLKKEIKLSDSLD----LKEYTNFIKKYLINISNKLKPKAKVCLVIGDV 337

Query: 109 HNIFRIGTMLQNLNF 123
           ++   +  + + +  
Sbjct: 338 YDFELVENIWKEIKN 352


>gi|308067599|ref|YP_003869204.1| adenine specific DNA methylase Mod [Paenibacillus polymyxa E681]
 gi|305856878|gb|ADM68666.1| Adenine specific DNA methylase Mod [Paenibacillus polymyxa E681]
          Length = 1042

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 64/174 (36%), Gaps = 34/174 (19%)

Query: 3   QKNSLAINENQNSIFEWKDKII---------------KGNSISVLEKLPA---KSVDLIF 44
           ++N   + + ++  FE+KD++I                G +   L  L     K VD I 
Sbjct: 428 RQNQNLVVDTRHFTFEFKDRLIASIDKLDELTGGLMVHGENFQALNFLLETYEKRVDAIQ 487

Query: 45  ADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
            DPPYN   +G LY+ ++                 ++ +     +    ++L  +G+   
Sbjct: 488 IDPPYNTDTSGFLYKNNYR--------------HSSWASMMSERIFVAEQLLDDSGSFRC 533

Query: 105 IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
               +    +  + +         IVW K NPM   +G      HE +I+ +  
Sbjct: 534 HIDENEYELLFNIFEQFGRGNAGTIVWNKLNPMLGRKG--VATQHEYIIYRTNF 585



 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 8/71 (11%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDY 257
            P   P ++   ++ +++    I+LD F GSGT+G     L       R +I +EM + +
Sbjct: 745 FPYAHPVSMYETLISANSP--SIVLDYFAGSGTTGHAVINLNREDGCNRKYILVEMGEHF 802

Query: 258 IDIATKRIASV 268
             +   R+  V
Sbjct: 803 NTVTRPRMKKV 813


>gi|239616522|ref|YP_002939844.1| DNA methylase N-4/N-6 [Kosmotoga olearia TBF 19.5.1]
 gi|239505353|gb|ACR78840.1| DNA methylase N-4/N-6 [Kosmotoga olearia TBF 19.5.1]
          Length = 89

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 4/84 (4%)

Query: 23  IIKGNSISVLEK-LPAKSVDLIFADPPYNLQLN--GQLYRPDHSLVDAVTDSWDKFSSFE 79
           I KG+ I V+ + +  +++DLI+ADPPYNL       +          + + WD +  + 
Sbjct: 6   IYKGDCIKVMREHIKDENIDLIYADPPYNLSGKSLNLINNKTGGPFYKMNEDWDTW-DYN 64

Query: 80  AYDAFTRAWLLACRRVLKPNGTLW 103
            Y  FT  W +     L    + +
Sbjct: 65  EYVEFTENWFVMLPEKLDKKSSNF 88


>gi|213859598|ref|ZP_03385302.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Typhi str.
           M223]
          Length = 340

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
             A  +  +      D +     G + + +  G+ +  T KP ALL +I+  +     ++
Sbjct: 43  MYAHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPTALLKKIIKLAIDKDGVV 102

Query: 228 LDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
           LD F GSGT+      L       R+FI   + Q
Sbjct: 103 LDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 136


>gi|213584315|ref|ZP_03366141.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
          Length = 321

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
             A  +  +      D +     G + + +  G+ +  T KP ALL +I+  +     ++
Sbjct: 24  MYAHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPTALLKKIIKLAIDKDGVV 83

Query: 228 LDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
           LD F GSGT+      L       R+FI   + Q
Sbjct: 84  LDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 117


>gi|325998366|gb|ADZ50574.1| Type III restriction-modification methylation subunit [Helicobacter
           pylori 2017]
          Length = 424

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 66/193 (34%), Gaps = 18/193 (9%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSL--------VDAV 68
           K  +IKG+++  L+ L    ++ + +I+ DPPYN +    +Y  D S         +D  
Sbjct: 89  KHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNENFIYGDDFSQSNEEVLKTLDYS 148

Query: 69  TDSWDKFSSF------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL- 121
            +  D   +         + +F    LL  R +LK +G +++    +   ++  +   + 
Sbjct: 149 KEKLDYIKNLFGSKCHSGWLSFMYPRLLLARDLLKQDGVIFISIDDNEAAQLKLLCDEIF 208

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
                     ++S        +     HE  +  + +       F            ++ 
Sbjct: 209 GEGNFLGDFIKQSKVGGGSDSKFIVKEHEYCLVYAKNINLTNEMFLKHDDDYLKRYKEID 268

Query: 182 SDWLIPICSGSER 194
                   + S R
Sbjct: 269 DKGRFFWDTFSRR 281



 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 8/129 (6%)

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETL--------IWASPSPKAKGYTFNYDALKAANE 176
           + N I++    P        +  + ET         +            F         +
Sbjct: 283 LTNPIIYEIKAPDGTLIKDGWIRSEETFKKNYQDGEVRIIKIKDKWSVQFKQYLNLNGKK 342

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
              M +D+   I   ++ +   + +K+    K    +S +L  +T  GDIILD F GSGT
Sbjct: 343 PRSMTTDFGGSIEGKNDIINLFNSDKIFSYPKSIKFISTLLKIATNEGDIILDFFAGSGT 402

Query: 237 SGAVAKKLR 245
           +     +  
Sbjct: 403 TAHAVLESN 411


>gi|325996774|gb|ADZ52179.1| Type III restriction-modification system methylation subunit
           [Helicobacter pylori 2018]
          Length = 425

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 66/193 (34%), Gaps = 18/193 (9%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSL--------VDAV 68
           K  +IKG+++  L+ L    ++ + +I+ DPPYN +    +Y  D S         +D  
Sbjct: 89  KHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNENFIYGDDFSQSNEEVLKTLDYS 148

Query: 69  TDSWDKFSSF------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL- 121
            +  D   +         + +F    LL  R +LK +G +++    +   ++  +   + 
Sbjct: 149 KEKLDYIKNLFGSKCHSGWLSFMYPRLLLARDLLKQDGVIFISIDDNEAAQLKLLCDEIF 208

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
                     ++S        +     HE  +  + +       F            ++ 
Sbjct: 209 GEGNFLGDFIKQSKVGGGSDSKFIVKEHEYCLVYAKNINLTNEMFLKHDDDYLKRYKEID 268

Query: 182 SDWLIPICSGSER 194
                   + S R
Sbjct: 269 DKGRFFWDTFSRR 281



 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 8/129 (6%)

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETL--------IWASPSPKAKGYTFNYDALKAANE 176
           + N I++    P        +  + ET         +            F         +
Sbjct: 283 LTNPIIYEIKAPDGTLIKDGWIRSEETFKKNYQDGEVRIIKIKDKWSVQFKQYLNLNGKK 342

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
              M +D+   I   ++ +   + +K+    K    +S +L  +T  GDIILD F GSGT
Sbjct: 343 PRSMTTDFGGSIEGKNDIINLFNSDKIFSYPKSIKFISTLLKIATNEGDIILDFFAGSGT 402

Query: 237 SGAVAKKLR 245
           +     +  
Sbjct: 403 TAHAVLESN 411


>gi|307638178|gb|ADN80628.1| type III restriction-modification system methylation subunit
           [Helicobacter pylori 908]
          Length = 428

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 66/193 (34%), Gaps = 18/193 (9%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSL--------VDAV 68
           K  +IKG+++  L+ L    ++ + +I+ DPPYN +    +Y  D S         +D  
Sbjct: 89  KHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNENFIYGDDFSQSNEEVLKTLDYS 148

Query: 69  TDSWDKFSSF------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL- 121
            +  D   +         + +F    LL  R +LK +G +++    +   ++  +   + 
Sbjct: 149 KEKLDYIKNLFGSKCHSGWLSFMYPRLLLARDLLKQDGVIFISIDDNEAAQLKLLCDEIF 208

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
                     ++S        +     HE  +  + +       F            ++ 
Sbjct: 209 GEGNFLGDFIKQSKVGGGSDSKFIVKEHEYCLVYAKNINLTNEMFLKHDDDYLKRYKEID 268

Query: 182 SDWLIPICSGSER 194
                   + S R
Sbjct: 269 DKGRFFWDTFSRR 281



 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 8/129 (6%)

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETL--------IWASPSPKAKGYTFNYDALKAANE 176
           + N I++    P        +  + ET         +            F         +
Sbjct: 283 LTNPIIYEIKAPDGTLIKDGWIRSEETFKKNYQDGEVRIIKIKDKWSVQFKQYLNLNGKK 342

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
              M +D+   I   ++ +   + +K+    K    +S +L  +T  GDIILD F GSGT
Sbjct: 343 PRSMTTDFGGSIEGKNDIINLFNSDKIFSYPKSIKFISTLLKIATNEGDIILDFFAGSGT 402

Query: 237 SGAVAKKLR 245
           +     +  
Sbjct: 403 TAHAVLESN 411


>gi|225026246|ref|ZP_03715438.1| hypothetical protein EUBHAL_00487 [Eubacterium hallii DSM 3353]
 gi|224956497|gb|EEG37706.1| hypothetical protein EUBHAL_00487 [Eubacterium hallii DSM 3353]
          Length = 620

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 59/157 (37%), Gaps = 25/157 (15%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVD-------------- 66
           I+G+++ VL+ L       V +I+ DPPYN   N  +Y  D  +                
Sbjct: 101 IEGDNLEVLKLLQESYLNKVKMIYIDPPYNTG-NDFIYNDDFKMTSEEYAEEISELDEDG 159

Query: 67  ----AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL- 121
                 TD+  +F S   + +   + L+  R +L  +G +++    +    +    + + 
Sbjct: 160 NRMFKNTDTNGRFHS--DWCSMIYSRLMLARNLLSDDGVIFISIDDNEQSNLKKCCEEIF 217

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
                   +  +    P    +   N+H+ ++  + +
Sbjct: 218 GEKNFVAQLIWERAFAPKNDAKYISNSHDYILMFAKN 254



 Score = 43.4 bits (101), Expect = 0.050,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 18/109 (16%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRI-LVSSTKPGDIILDPFFGSGTSGAVA------KK 243
           GS+ L       +    KP  LL R+ ++++ K   I+LD F GS T+          K 
Sbjct: 375 GSQELIKIMDGGVFDGPKPTRLLKRLMILANLKENSIVLDFFSGSATTAHALMEVNKEKN 434

Query: 244 LRRSFIGIEMKQD--------Y---IDIATKRIASVQPLGNIELTVLTG 281
           L+  +I +++ ++        Y    +I  +RI         E  ++T 
Sbjct: 435 LKCKYIMVQLAENTNKKKDTGYKNICEIGKERIRRAGKKIKEEAPLVTQ 483


>gi|311977257|gb|ADQ20509.1| M.BseYI [Bacillus sp. 2521]
          Length = 915

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 5/83 (6%)

Query: 186 IPICSGSERLRNKDGEKLH-----PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           I +    +    K    LH     P +    +  + +++ + P D++LDPF GSGT+   
Sbjct: 548 INLTDDWDFHDEKPSNGLHSIHPYPAKFIPQIPHKAILNWSNPNDVVLDPFCGSGTTLLE 607

Query: 241 AKKLRRSFIGIEMKQDYIDIATK 263
           A    R+ IG++       I+  
Sbjct: 608 AITNNRTAIGVDNNSVACLISRA 630



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 45/146 (30%), Gaps = 21/146 (14%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL---------VDAVTDSWDKF----SSF 78
           L+ + + SVDLI   PPY    +   Y                D      D F    ++ 
Sbjct: 769 LDFIESNSVDLIVTSPPYLNAYDYHKYHRHRIHWIDGDVNLARDYEIGKHDTFTRPNATP 828

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI--------FRIGTMLQNLNFWILNDIV 130
           + Y     +      RVLK    L +I     +         +  + L    F + N  +
Sbjct: 829 DKYFEDMFSCFNEWNRVLKNQSKLCIIIGDAVVNKQPVAVADKFTSYLIENGFTLENRWI 888

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWAS 156
                   +F  +   N    L+++ 
Sbjct: 889 RNLKTTKKSFNQKARMNQEHVLLFSK 914



 Score = 41.9 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 207 QKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +    L+  ++ +S  K    IL+PF GSGT+   A  L      +++  
Sbjct: 119 KFFPQLVRSLINISGVKEKSRILEPFSGSGTTACEANMLNMDCFAVDLNP 168


>gi|104774131|ref|YP_619111.1| Type III restriction-modification system methyltransferase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
 gi|103423212|emb|CAI98032.1| Type III restriction-modification system methyltransferase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 624

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 68/206 (33%), Gaps = 26/206 (12%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN--- 54
           + ++ S+  +     + + ++  I+G+++  L+ L       V +I+ DPPYN   +   
Sbjct: 86  LEKEKSVGRDGTPGGV-DSENIYIEGDNLDALKLLQETYLGKVKMIYIDPPYNTGNDFIY 144

Query: 55  ---------------GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99
                          GQ     + LV   ++S  +F +   +       L   + +L P+
Sbjct: 145 EDDFAQSVDEYADNSGQTDEEGNRLVQ-NSESNGRFHT--DWLNMIYPRLRLAKDLLAPD 201

Query: 100 GTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
           G +++    +    +  +   +            K          +    HE ++     
Sbjct: 202 GLIFISIDDNEFGNLKKICDEIFGTQSFLATFVWKRRSSSQLDKSKCSTDHEYVLAYKRE 261

Query: 159 PKAKGYTFNYDALKAANEDVQMRSDW 184
                   + D    +N D   R  W
Sbjct: 262 KFTALRGIDKDYKGYSNPDSDPRGPW 287



 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 48/107 (44%), Gaps = 20/107 (18%)

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR--- 245
             G++++ +  G+   P  KP +L+  +++ +T+   II+D F GS T+   A +L    
Sbjct: 378 IEGTKQMYDLFGKSFFPYTKPMSLIKSLILQATEKDSIIVDFFSGSATTAQAAMQLNAED 437

Query: 246 ---RSFIGIEMKQD-------Y-------IDIATKRIASVQPLGNIE 275
              R +I ++++++       Y        D+  +RI         E
Sbjct: 438 GGKRKYILVQLQEETGQKSEAYKSGFKNICDVGEERIRRAGKKIKDE 484


>gi|207093480|ref|ZP_03241267.1| type II restriction enzyme M protein (hsdM) [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 103

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/107 (43%), Positives = 61/107 (57%), Gaps = 6/107 (5%)

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
           LN I W+K+NP PNF  R   ++ E +IWA  S K K + FNY+ LK  N D QMR  W 
Sbjct: 3   LNLITWQKTNPPPNFSCRYLTHSAEQIIWARKSRKHK-HVFNYEVLKKINNDKQMRDVWN 61

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
            P  +  E+   K     HPTQKP ALL R+L+ ++    +I DPF 
Sbjct: 62  FPAIAPWEKANGK-----HPTQKPLALLVRLLLMASDENSLIGDPFS 103


>gi|153815967|ref|ZP_01968635.1| hypothetical protein RUMTOR_02212 [Ruminococcus torques ATCC 27756]
 gi|317500727|ref|ZP_07958945.1| hypothetical protein HMPREF1026_00888 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089795|ref|ZP_08338688.1| hypothetical protein HMPREF1025_02271 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846786|gb|EDK23704.1| hypothetical protein RUMTOR_02212 [Ruminococcus torques ATCC 27756]
 gi|316897921|gb|EFV19974.1| hypothetical protein HMPREF1026_00888 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330403492|gb|EGG83050.1| hypothetical protein HMPREF1025_02271 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 629

 Score = 61.9 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 59/164 (35%), Gaps = 23/164 (14%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQLN-----------------GQLYRPDHS 63
           I+G+++ VL+ L      SV +I+ DPPYN   +                 G   + D +
Sbjct: 100 IEGDNLDVLKLLQESYLDSVKVIYIDPPYNTGNDFIYADDFRIRAREYVNAGGASQDDKN 159

Query: 64  LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-N 122
            +    D   ++ S   + +   A LLA R +L  +G +++    +    +  +   +  
Sbjct: 160 RMYQNLDYSGRYHS--DWCSMIYARLLAARNLLCDDGVIFISIDDNEQANLKKICDEVFG 217

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
                +      +     R +     HE ++  + +       F
Sbjct: 218 ERNFVNCFIWNCSTAGGIRPKFASKTHEYILCYAKNKTCLDMFF 261



 Score = 43.8 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 20/90 (22%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIE 252
           DG+++    KP  ++   +  + K GDI++D F GS T+     +          +I ++
Sbjct: 392 DGKRVFENVKPVNVIQYFINMAAKDGDIVMDFFSGSATTAHAVMQTEADKNIDLHYILVQ 451

Query: 253 M-------KQDY-------IDIATKRIASV 268
           +        + Y        +I  +RI   
Sbjct: 452 IPQECDKKSEAYKAGYKTICEIGKERIRRA 481


>gi|227503681|ref|ZP_03933730.1| site-specific DNA-methyltransferase [Corynebacterium accolens ATCC
           49725]
 gi|227075717|gb|EEI13680.1| site-specific DNA-methyltransferase [Corynebacterium accolens ATCC
           49725]
          Length = 416

 Score = 61.9 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 60/161 (37%), Gaps = 5/161 (3%)

Query: 21  DKIIKGNSISVLEKLPA--KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           + I   +++ VL+   +  ++ D+I+ DPPYN   +        +  +  + S+ ++ + 
Sbjct: 52  NSIHLADNLPVLQHWASTGETFDVIYIDPPYNTGRDFVYRDNYRARREVKSGSYAQWHA- 110

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPM 137
             + +     L+  RRVL  NG ++V            +L  +            K    
Sbjct: 111 -EWLSMMLPRLILARRVLAENGFIFVSIGEDEAANTRKVLDEVFGEGCYAGQFIWKKAGT 169

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
                +     HE ++  + +P   G+  + +   +   + 
Sbjct: 170 GKNDSKYAVVEHEYILCYAKNPDNPGFNLDAEGFTSTKYNH 210



 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 37/120 (30%)

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
                + +      R R  ++  E         +   YT NY    A    +     + +
Sbjct: 244 QHWPDQPAGHSRVARWRWGKDMVEKRYDELVFRRGFVYTKNYKKAGARPRSILDGQRFGV 303

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                 +       E +    KP  L+  ++         +LD F GSGT+     +L R
Sbjct: 304 TRTGRRDAEDVMGVEGIFEFPKPVRLIKHLIAIGGGVDARVLDFFAGSGTTAQAVIELNR 363


>gi|257467076|ref|ZP_05631387.1| hypothetical protein FgonA2_06514 [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|315918209|ref|ZP_07914449.1| chromosome partitioning protein parB [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|313692084|gb|EFS28919.1| chromosome partitioning protein parB [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 151

 Score = 61.9 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 57/149 (38%), Gaps = 13/149 (8%)

Query: 96  LKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
           ++  G  +V  +   +      L+         +VW K++   N   + +   HE  ++ 
Sbjct: 1   MEEGGAFYVFYAESEVIAFRDALEKSGLKYSQTLVWVKNSF--NLSRQDYNWKHEPCLYG 58

Query: 156 SPSPKAKGYTFNYDAL-----------KAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
               KA  +  ++               +  E +Q   +    + +   R        +H
Sbjct: 59  WKLGKAHYFIKDFTQDTELQTEEILKKMSKKELIQHILELEEKVYTTVIRENKPLKNDVH 118

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFG 233
           PT KP  LL+R++ +S+K G  ++D F G
Sbjct: 119 PTMKPIKLLARLIANSSKKGWKVIDLFGG 147


>gi|254168572|ref|ZP_04875415.1| hypothetical protein ABOONEI_1264 [Aciduliprofundum boonei T469]
 gi|197622406|gb|EDY34978.1| hypothetical protein ABOONEI_1264 [Aciduliprofundum boonei T469]
          Length = 273

 Score = 61.9 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 6/130 (4%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEA 211
            +  P+  A     + D     N D  +    WL P    S     K      P      
Sbjct: 7   FFIHPTYSAFVKINDLDLRNWKNYDEIITDSLWLFPSRDNSGMHTPKYHGNFIP-----Q 61

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           +  + ++  TK G+ +LD F G GT+   AK+L R+ IGIE+ ++  ++A + I   +  
Sbjct: 62  IPRQAMLRFTKRGEWVLDTFAGLGTTLIEAKRLGRNAIGIEIDENTANMARELIEQEENP 121

Query: 272 GNIELTVLTG 281
            N+   ++ G
Sbjct: 122 YNVYTDIIIG 131


>gi|317181204|dbj|BAJ58990.1| Type III DNA modification enzyme [Helicobacter pylori F32]
          Length = 439

 Score = 61.9 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 62/158 (39%), Gaps = 18/158 (11%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSL--------VDAV 68
           K  +IKG+++  L+ L    ++ + +I+ DPPYN + +  +Y  D S         +D  
Sbjct: 89  KHILIKGDNLDALKILRQSYSEKIKMIYIDPPYNTKNDNFIYSDDFSQSNEEVLKTLDYS 148

Query: 69  TDSWDKFSSF------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL- 121
            +  D   +         + +F    LL  + +LK +G +++    +   ++  +   + 
Sbjct: 149 KEKLDYIKNLFGSKCHSGWLSFMYPRLLLAKDLLKQDGVIFISIDDNEAAQLKLLCDEIF 208

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
                     RK+    N         HE L+  + + 
Sbjct: 209 GEGNFVADFIRKTKSTTNDAKTGVNYQHEFLLCYAKNK 246



 Score = 42.7 bits (99), Expect = 0.089,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +     K    +++I+  +T+ GDIILD F GSGT+     +  
Sbjct: 379 EYFSYPKGVDFMAKIVEHATEKGDIILDFFAGSGTTAHAVLESN 422


>gi|260431261|ref|ZP_05785232.1| site-specific DNA-methyltransferase [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415089|gb|EEX08348.1| site-specific DNA-methyltransferase [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 583

 Score = 61.9 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 13/140 (9%)

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS----GSERL 195
           +R     +  E+L    P   ++ Y  + +  +A     + +S W  P  S    G +  
Sbjct: 298 YRIYLDVDREESLFEDDPEDYSEDY--DDETGEAIERTTKPKSFWWGPELSTDNAGKQLK 355

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFI 249
              DG K     KP +L+ +I+        +ILD F GSGT+G     L       R FI
Sbjct: 356 DIFDGRKPFDYPKPISLVQKIMHMIGDEEALILDSFAGSGTTGQAVLDLNKKDGGNRRFI 415

Query: 250 GIEMKQD-YIDIATKRIASV 268
            +EM +    +I  KR+  V
Sbjct: 416 LVEMDEKIASEITAKRLRRV 435



 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 54/153 (35%), Gaps = 10/153 (6%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHS-------LVDAVTD 70
           + +++G+++  L+ L       V  I+ DPPYN    G +Y  + +       L   V  
Sbjct: 39  NLLVQGDNLEALKALLPYYAGKVKCIYIDPPYNTGNEGWVYNDNVASPEIKAWLGKVVGK 98

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
             +  S  + +       L   R  L+ +G L+     + I     +L+++        +
Sbjct: 99  EAEDLSRHDKWLCMMYPRLRLLREFLREDGVLFASIDANEIANFQLVLEDVFSGCSQIAI 158

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
              +N             HE L+  + +     
Sbjct: 159 PVVNNMKGRNDREYISTCHEYLVMVAKTDFVSH 191


>gi|15644888|ref|NP_207058.1| adenine specific DNA methyltransferase (mod) [Helicobacter pylori
           26695]
 gi|2313354|gb|AAD07328.1| adenine specific DNA methyltransferase (mod) [Helicobacter pylori
           26695]
          Length = 384

 Score = 61.9 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 54/140 (38%), Gaps = 17/140 (12%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
             K+    ++  L+++  +S+  I+ DPPYN + +   Y  DH+                
Sbjct: 1   MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYEDDHA---------------- 44

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y+ + +  L+  + VLK +G L++    + +  +  +   +     N +    +     
Sbjct: 45  DYEKWIKEHLILAKAVLKQSGCLFISMDDNKMAEVKIIANEIFGT-RNFLGTFITKQATR 103

Query: 140 FRGRRFQNAHETLIWASPSP 159
              +     HE ++  + + 
Sbjct: 104 SNAKHINITHEYVLSYAKNK 123



 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 2/97 (2%)

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           L + +         +    LK + ++     D+      G++ L     + L  T KP A
Sbjct: 235 LYYQNRLIFKNNRPYEKYYLKESQDNCLSVLDFY--SRQGTKDLEKLGLKGLFKTPKPVA 292

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
           L+  +L+ ST    IILD F GSGT+     ++ R +
Sbjct: 293 LIKYLLLCSTPKDSIILDFFAGSGTTAQAVIEVNRDY 329


>gi|92116203|ref|YP_575932.1| DNA methylase N-4/N-6 [Nitrobacter hamburgensis X14]
 gi|91799097|gb|ABE61472.1| DNA methylase N-4/N-6 [Nitrobacter hamburgensis X14]
          Length = 660

 Score = 61.9 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 60/200 (30%), Gaps = 19/200 (9%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLN---------------GQLYRPD 61
           ++ +I+G+++ VL+ L    A  V LI+ DPPYN                       +  
Sbjct: 96  QNLVIEGDNLEVLKLLQKSYAGKVKLIYIDPPYNTGKEFIYPDRFQDNLDTYLKYTGQKG 155

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
              +   +++ +       +       L   R +L  +G +++    +    +  +   +
Sbjct: 156 EDGLKTTSNTENDGRFHTNWLNMIYPRLKLARTMLADDGAIFISIDDNEKANLKEICDEI 215

Query: 122 -NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
                    +  +SN          +     L++      A G            ++   
Sbjct: 216 FGEDNFLTAIIVQSNKRGQTYKEIAKCHEYILVYYKTENGALGELDKDGDALPYADEHGG 275

Query: 181 RSDWLIPICSGSERLRNKDG 200
              W +   +      N+  
Sbjct: 276 YDLWELRNRNPKFGRHNRPN 295



 Score = 56.1 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 7/58 (12%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEM-KQDY 257
            KP  L+ R +   T   D+++D F GSGT+            L R +I +++ +  Y
Sbjct: 411 PKPIELIRRCVFLGTNEDDLVMDFFAGSGTTAHAVMLQSAQDGLSRRWISVQLPEPTY 468


>gi|85720925|gb|ABC75875.1| M2.BtsI [Geobacillus thermoglucosidasius]
          Length = 393

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           +   T+PGD ILDP+ GSGT+   A  L R  IGI++    + IA  ++  ++
Sbjct: 50  IELLTQPGDTILDPYMGSGTTLVEAVLLNRFSIGIDLNPLAVLIAQAKVTPIE 102


>gi|289595716|ref|YP_003482412.1| DNA methylase N-4/N-6 domain protein [Aciduliprofundum boonei T469]
 gi|289533503|gb|ADD07850.1| DNA methylase N-4/N-6 domain protein [Aciduliprofundum boonei T469]
          Length = 257

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 5/98 (5%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           WL P    S     K      P      +  + ++  TK G+ +LD F G GT+   AK+
Sbjct: 23  WLFPSRDNSGMHTPKYHGNFIP-----QIPRQAMLRFTKRGEWVLDTFAGLGTTLIEAKR 77

Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
           L R+ IGIE+ ++  ++A + I   +   N+   ++ G
Sbjct: 78  LGRNAIGIEIDENTANMARELIEQEENPYNVYTDIIIG 115


>gi|242240461|ref|YP_002988642.1| Site-specific DNA-methyltransferase (adenine-specific) [Dickeya
           dadantii Ech703]
 gi|242132518|gb|ACS86820.1| Site-specific DNA-methyltransferase (adenine-specific) [Dickeya
           dadantii Ech703]
          Length = 660

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 66/202 (32%), Gaps = 24/202 (11%)

Query: 12  NQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLN-------------- 54
           N       ++  I+G+++ VL+ L       V LI+ DPPYN   +              
Sbjct: 124 NSKEWDTTRNVFIEGDNLEVLKILQRHYHNKVKLIYIDPPYNTGKDFVYPDNYKEGLDSY 183

Query: 55  ---GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
               +    +   V   +++  ++ S   +       L   R +L  +G +++    +  
Sbjct: 184 LEWTRQVNEEGKKVSTNSETEGRYHSN--WLNMMYPRLKLARNLLTDDGVIFISIDDNEQ 241

Query: 112 FRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
             +  +   +      +  ++W+                HE ++  S +  A       D
Sbjct: 242 ENLRKLCNEVFGEGRFIAQLIWKSRVSEDTRATTGVSTDHEYILVYSKTENAVFRGTEKD 301

Query: 170 ALKAANEDVQMRSDWLIPICSG 191
             K  N D   R  W     +G
Sbjct: 302 KTKFNNPDNDPRGPWRSADLTG 323



 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 34/96 (35%), Gaps = 20/96 (20%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR----- 245
           G+       G  +    KP +L+  +        DIILD F GS T+     +L      
Sbjct: 407 GTRETNGLIGNGVFSFPKPVSLIFSLAEQIMSDEDIILDFFAGSATTAHAVMQLNAEDNG 466

Query: 246 -RSFIGI---EMKQDY-----------IDIATKRIA 266
            R FI +   E   +             DI+ KRI 
Sbjct: 467 KRRFIMVQLPEPTPEASEARKAGFATIADISRKRIE 502


>gi|134093943|ref|YP_001099018.1| putative site-specific DNA-methyltransferase (adenine-specific)
           [Herminiimonas arsenicoxydans]
 gi|133737846|emb|CAL60891.1| putative Site-specific DNA-methyltransferase (adenine-specific)
           [Herminiimonas arsenicoxydans]
          Length = 841

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 12/140 (8%)

Query: 21  DKIIKGNSISVLEKL--P-AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
             +I+ ++   L+ L  P    VD I+ DPPYN          D    +   D  D++  
Sbjct: 132 HVLIEADNYHALQLLVFPYEGKVDCIYIDPPYNTGAR------DWKYNNDYVDKNDQWQH 185

Query: 78  FEAYDAFTRAWLLACRRVLKP-NGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            + +  F    L   +R+L P NG L V    H +  +G +L+         +V   +N 
Sbjct: 186 SK-WLTFMAKRLKLAKRLLNPENGVLIVTIDEHEVNHLGMLLKREFPEARQQMVTIVNNG 244

Query: 137 MPNFRGRRFQNAHETLIWAS 156
               +G  ++   E   +  
Sbjct: 245 AGVSQGGFYR-VEEYAFFCF 263



 Score = 40.7 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 10/106 (9%)

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYIDIATK-RIASVQPLG 272
             +P  +I+D F GSGT+    + L       R  + +   +  ++ +T+  +  +QP  
Sbjct: 486 GNRPNALIVDFFSGSGTTLLATELLNNRDGGRRHCLLVTNNEVSVEKSTELELQGMQPGC 545

Query: 273 NI-ELTVLTGKRTEPRVAFNLLVER--GLIQPGQILTNAQGNISAT 315
           N  E   +    T PR  F +L +R  G    G+ LT    ++  T
Sbjct: 546 NEWETHGVCRSVTWPRSKFTILGQRDDGTKLSGEYLTGKSTDVEKT 591


>gi|217034286|ref|ZP_03439703.1| hypothetical protein HP9810_885g17 [Helicobacter pylori 98-10]
 gi|216943258|gb|EEC22723.1| hypothetical protein HP9810_885g17 [Helicobacter pylori 98-10]
          Length = 461

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 70/186 (37%), Gaps = 20/186 (10%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSL--------VDAV 68
           K  +IKG+++  L+ L    ++ + +I+ DPPYN + +  +Y  D S         +D  
Sbjct: 89  KHILIKGDNLDALKILRQSYSEKIKMIYIDPPYNTKNDSFIYSDDFSQSNEEILKTLDYS 148

Query: 69  TDSWDKFSSF------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL- 121
            +  D   +         + +F    LL  + +LK +G +++    +   ++  +   + 
Sbjct: 149 KEKLDYIKNLFGSKCHSGWLSFMYPRLLLAKDLLKQDGVIFISIDDNEAAQLKLLCDEIF 208

Query: 122 --NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
               ++   I   K+ P  N    +  +     I+       K         +   +   
Sbjct: 209 GERNFVTQFIWHSKNKPSGNTTENKTIDTRIEYIFCYQRYNFKANKHENTKEELEEKGYI 268

Query: 180 MRSDWL 185
           ++ ++ 
Sbjct: 269 LKDEYF 274



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 28/47 (59%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +GEK+    KP  L+SR++  ST  GDIILD F GSGT+     +  
Sbjct: 401 NGEKIFSYPKPTKLISRLIELSTNEGDIILDFFAGSGTTAHAVLESN 447


>gi|325997139|gb|ADZ49347.1| Type II DNA modification enzyme/ methyltransferase [Helicobacter
           pylori 2017]
          Length = 390

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 56/140 (40%), Gaps = 17/140 (12%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
             K+    ++  L+++  +S+  I+ DPPYN + +   Y  DH+                
Sbjct: 1   MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYEDDHA---------------- 44

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y+ +    L+  + VLK +G +++    + +  +  ++ N  F + N +    +     
Sbjct: 45  DYEKWIEEHLILAKAVLKQSGCIFISIDDNKMAEVK-IIANKIFGMRNFLGIFITKQATR 103

Query: 140 FRGRRFQNAHETLIWASPSP 159
              +     HE ++  + + 
Sbjct: 104 SNAKHINITHEYVLSYAKNK 123



 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 11/107 (10%)

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           L + +         +    LK + ++     D+      G++ L     + L  T KP  
Sbjct: 235 LYYQNRLIFKNNRPYEKYYLKESQDNCLSVLDFY--SRQGTKDLEKLGLKGLFKTPKPVG 292

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           L+  +L+ ST    IILD F GSGT+             IE  +DY 
Sbjct: 293 LIKYLLLCSTPKDSIILDFFAGSGTTAQAV---------IEANKDYY 330


>gi|307636952|gb|ADN79402.1| typeIII restriction modification / methylation subunit
           [Helicobacter pylori 908]
 gi|325995543|gb|ADZ50948.1| Type III restriction-modification system methylation subunit
           [Helicobacter pylori 2018]
          Length = 390

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 56/140 (40%), Gaps = 17/140 (12%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
             K+    ++  L+++  +S+  I+ DPPYN + +   Y  DH+                
Sbjct: 1   MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYEDDHA---------------- 44

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y+ +    L+  + VLK +G +++    + +  +  ++ N  F + N +    +     
Sbjct: 45  DYEKWIEEHLILAKAVLKQSGCIFISIDDNKMAEVK-IIANKIFGMRNFLGTFITKQATR 103

Query: 140 FRGRRFQNAHETLIWASPSP 159
              +     HE ++  + + 
Sbjct: 104 SNAKHINITHEYVLSYAKNK 123



 Score = 51.1 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 11/107 (10%)

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           L + +         +    LK + ++     D+      G++ L     + L  T KP  
Sbjct: 235 LYYQNRLIFKNNRPYEKYYLKESQDNCLSVLDFY--SRQGTKDLEKLGLKGLFKTPKPVG 292

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           L+  +L+ ST    IILD F GSGT+             IE  +DY 
Sbjct: 293 LIKYLLLCSTPKDSIILDFFAGSGTTAQAV---------IEANKDYY 330


>gi|269976662|ref|ZP_06183639.1| site-specific DNA-methyltransferase [Mobiluncus mulieris 28-1]
 gi|307701482|ref|ZP_07638501.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
 gi|269935136|gb|EEZ91693.1| site-specific DNA-methyltransferase [Mobiluncus mulieris 28-1]
 gi|307613392|gb|EFN92642.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
          Length = 622

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 71/210 (33%), Gaps = 13/210 (6%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQ----LNGQLYRP--DHS 63
           ++  F+  +  I+G+++ VL+ L       V +I+ DPPYN         +      ++ 
Sbjct: 90  KDGSFDSDNIYIEGDNLEVLKLLQRGYHGKVKMIYIDPPYNTGHDFVYKDKFSDTIENYK 149

Query: 64  LVDAVTDSWDKFSSFEAYDAF---TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
               +T   +  +S   +  +       L   R +L  +G +++    +    +  +   
Sbjct: 150 EQAGLTGQSNAETSGRYHSDWCSMMYPRLKLARELLSDDGVIFISIDDNENRNLRILCDE 209

Query: 121 L-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
           +         +  +    P    +   N+H+ ++  + S +            A      
Sbjct: 210 VFGEPNFVAQLIWERAFSPKNDAKFVSNSHDYVLVYAKSIEHFTIGRLPRTETANARYTN 269

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
             +D   P  S +  ++       +P   P
Sbjct: 270 PDNDPRGPWMSDNMTVKTYSESTDYPITTP 299



 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 30/133 (22%)

Query: 199 DGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFI-- 249
           DG+      KP  LL R++ +++    D +LD F GS +      K          F+  
Sbjct: 378 DGKSYFDGPKPTRLLQRLMTLANLSNNDTVLDFFSGSASMAHSVFKQEIERGTGYHFVLV 437

Query: 250 -------------------GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAF 290
                                ++ ++ I  A  +I S     N +L +    +  P + F
Sbjct: 438 QLPEGTDPKREAYKDGYATLCDIGEERIRRAGDKIKSDLDESNRQLMLGEEPKQLPDIGF 497

Query: 291 N--LLVERGLIQP 301
               L + G+ +P
Sbjct: 498 RVFTLDDSGIEKP 510


>gi|190890137|ref|YP_001976679.1| DNA methylase [Rhizobium etli CIAT 652]
 gi|190695416|gb|ACE89501.1| putative DNA methylase protein [Rhizobium etli CIAT 652]
          Length = 230

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 35/64 (54%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            P AL+S +L   TKPGD++ DPF G GT+  V ++  R   GIE  +   +   +RI +
Sbjct: 40  FPGALVSALLDRFTKPGDVVFDPFVGLGTTFFVCEQRGRLPYGIEADRQRYEWVRERITA 99

Query: 268 VQPL 271
              L
Sbjct: 100 KHHL 103



 Score = 36.5 bits (83), Expect = 6.9,   Method: Composition-based stats.
 Identities = 13/88 (14%), Positives = 28/88 (31%), Gaps = 18/88 (20%)

Query: 20  KDKIIKGNSISV----LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           K  +I G+S  +    L ++     D     PPY          P     + + +    +
Sbjct: 100 KHHLICGDSAELTAFDLPEM-----DFCITSPPY---------MPHWHKWNPLYNGDPDY 145

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLW 103
             ++ Y    +       + +K +  L 
Sbjct: 146 DGYDVYLKRMQEIYGRICKRMKTDAYLV 173


>gi|115289051|gb|ABI85537.1| M.Hin1056ModP-6 [Haemophilus influenzae]
          Length = 351

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 17/104 (16%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       V LI+ DPPYN   +G  Y              DKF +
Sbjct: 203 NLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTGNDGFKY-------------NDKF-N 248

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
              +  F +  L   R +L  +G ++V    +    +  ++  +
Sbjct: 249 HSTWLTFMKNRLEVARELLSDDGVIFVQCDDNEQAYLKVLMDEI 292


>gi|115289054|gb|ABI85539.1| M.Hin1056ModP-6 [Haemophilus influenzae]
          Length = 351

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 17/104 (16%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       V LI+ DPPYN   +G  Y              DKF +
Sbjct: 203 NLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTGNDGFKY-------------NDKF-N 248

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
              +  F +  L   R +L  +G ++V    +    +  ++  +
Sbjct: 249 HSTWLTFMKNRLEVARELLSDDGVIFVQCDDNEQAYLKVLMDEI 292


>gi|302530387|ref|ZP_07282729.1| predicted protein [Streptomyces sp. AA4]
 gi|302439282|gb|EFL11098.1| predicted protein [Streptomyces sp. AA4]
          Length = 622

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 55/154 (35%), Gaps = 23/154 (14%)

Query: 20  KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN-----------------GQLYR 59
           K+  I+G+++  L+ L       V+LI+ DPPYN   +                      
Sbjct: 102 KNLFIEGDNLDALKLLQESYLGKVNLIYIDPPYNTGNDFIYNDDFAQKTAEYLEKSGQSD 161

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
            + + + A TD+  +F S   + +     L   R +L  NG + +         +  +L 
Sbjct: 162 ENGTRLIANTDTNGRFHS--DWLSMMYPRLKLARNLLSQNGFICISIDDGEAAPLKAILD 219

Query: 120 NL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETL 152
            +         +  +   + N   +   + H+ +
Sbjct: 220 EVFGRKNFIATIVWQKRYVANVTAKYISDMHDFV 253



 Score = 51.1 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 51/158 (32%), Gaps = 13/158 (8%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKP 209
           IW      A+    ++   K A        ++     +    L  K+   G     T KP
Sbjct: 338 IWWGVDGTARPMLKSFLNEKDATTTPHTWWEYEFAGHNKEATLEMKELFGGASPFDTPKP 397

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE--MKQDYIDIAT---KR 264
             L+SRI+ +      I++D F GS T      K        E      YI +     ++
Sbjct: 398 VRLMSRIIEAFGGRDGIVMDFFAGSSTFAHATLKSN-----AENGTNLSYIQVQVPEGRK 452

Query: 265 IASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPG 302
           I+    L          +    R    LL E G I  G
Sbjct: 453 ISDGSQLSEFSNISQLSRERIRRAGRKLLEESGKIDVG 490


>gi|158335560|ref|YP_001516732.1| DNA modification methylase [Acaryochloris marina MBIC11017]
 gi|158305801|gb|ABW27418.1| DNA modification methylase, putative [Acaryochloris marina
           MBIC11017]
          Length = 368

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 2/102 (1%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G   + T  P      IL      G+ +LDPF G GT+   ++ L    IGI+      
Sbjct: 12  NGICPYFTMFPLDFPYSILEEHGSRGEWVLDPFCGRGTTIYASRLLGMPSIGIDSSPVAT 71

Query: 259 DIATKRIASVQP--LGNIELTVLTGKRTEPRVAFNLLVERGL 298
            I+  ++ +++P  + +  + +L        +      E   
Sbjct: 72  AISEAKLVNIKPGHIVSTAIKILKNAEEPSDIPTGEFWELAF 113


>gi|86153960|ref|ZP_01072162.1| DNA adenine modification methylase [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|85842498|gb|EAQ59711.1| DNA adenine modification methylase [Campylobacter jejuni subsp.
           jejuni HB93-13]
          Length = 265

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 5/85 (5%)

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
               + D+   S WLI     S + RN       P Q P  L+ R     TK  D+I+DP
Sbjct: 9   NNWKSCDINTDSLWLIASRDKSGKHRNIYHGNFIP-QIPNQLIRR----YTKKDDLIIDP 63

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQ 255
           F GSGT+    +KL R  IG ++ +
Sbjct: 64  FLGSGTTLYECEKLNRKCIGFDINE 88


>gi|212696514|ref|ZP_03304642.1| hypothetical protein ANHYDRO_01052 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676499|gb|EEB36106.1| hypothetical protein ANHYDRO_01052 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 585

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 10/113 (8%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSE--RLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
            +  +  +N D   + D       G E   L  +   K    +KP +LL+RI+       
Sbjct: 360 WFADVGVSNSDGVFKKDIEGTYWDGIELNNLSKEGNVKFSNGKKPLSLLNRIIKMYKYKD 419

Query: 225 DIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYI--DIATKRIASVQ 269
            +ILD F GSGT+G    +L       R +I     ++ I   I  +R+ ++Q
Sbjct: 420 AVILDYFAGSGTTGHAVVQLNKEDGGDRKYILCTNNENNICEKITYQRMKNIQ 472



 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 13/123 (10%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY 58
            +     I  +  S F +   I++G+++  L+ L       VD+I+ DPPYN      +Y
Sbjct: 56  REIEDKKIIGDNTSAFNF---ILEGDNLHSLKLLEKTHKGKVDVIYIDPPYNTGNKDFIY 112

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
                  D      D       + +F    L   R++L   G ++       + +   +L
Sbjct: 113 -------DDNYIGSDDGYRHSKWLSFMNERLRIARKLLSKEGVIFCSIGDDELSQFKIIL 165

Query: 119 QNL 121
             +
Sbjct: 166 DEI 168


>gi|326336166|ref|ZP_08202338.1| type I restriction enzyme R protein [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325691675|gb|EGD33642.1| type I restriction enzyme R protein [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 745

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 31/59 (52%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           G   + T++   ++ + +   TKP D+ILDPF GSG +   A  L R  I I++    I
Sbjct: 199 GVHGYFTKQSWDVVQQYIKHFTKPNDVILDPFGGSGVTAIEAIMLGRKGINIDINPLAI 257



 Score = 48.1 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 19/154 (12%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG-------- 55
           K  +A   N+++I     +IIKG++   L  +   S+D I+ DPPY  ++          
Sbjct: 412 KKEIAPLINESTINNL--QIIKGSATH-LSTIEDLSIDYIYTDPPYGDKIPYLDLSVMWN 468

Query: 56  ---QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN---GTLWVIGSYH 109
               L   +    +   +      + + Y       +    RVLK +     ++     H
Sbjct: 469 AWLDLPITEEDRKEEAIEGGSLHKTKDEYSDLLSQSIKEMYRVLKFDRWLSFVFSHKDPH 528

Query: 110 NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
               I    +   F  +  +  ++SN   +F+ R
Sbjct: 529 YWHIIVEAAEKCGFEYVGTV--KQSNGQTSFKKR 560


>gi|269214310|ref|ZP_05986314.2| type III restriction-modification system methyltransferase
           [Neisseria lactamica ATCC 23970]
 gi|269210190|gb|EEZ76645.1| type III restriction-modification system methyltransferase
           [Neisseria lactamica ATCC 23970]
          Length = 658

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 10/163 (6%)

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY---TFNYDALKAANEDVQMRSD 183
            +++   +N       +      +  ++   + + K      F  +           + D
Sbjct: 343 GEVITHPTNAWKFEHSKYLSYQEDNRLYWGKNGENKYPRLKKFLTEMDGGMVPVDLWKHD 402

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGSGTSGAVAK 242
                 + S+ L +  G+ +    KP +L+ R+L  ++   D IILD F GSGT+     
Sbjct: 403 ETGTTDAASKELESMIGKGIFTFPKPPSLIKRMLKIASNKKDSIILDFFSGSGTTAHAVM 462

Query: 243 KLR------RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
           +L       R FI +++ ++  + +  R A    +  I    +
Sbjct: 463 QLNAEDGGSRRFICVQLPEETDEKSEARKAGFDTIAEIAKERI 505



 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 69/222 (31%), Gaps = 35/222 (15%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLY-------RPDHSLVDAVT 69
           ++  I+  ++  L+ L    A SV +I+ DPPYN   +  +Y       R +++     T
Sbjct: 120 QNVFIEAENLEALKILQKSYAGSVKMIYIDPPYNTGNDSFVYPDKFSESREEYARRVGDT 179

Query: 70  DS-------------W-----DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
           D              W     D       + +     L   + +L+ +G +++    +  
Sbjct: 180 DDAGYLKRDGVFQGAWRKNGKDSGHYHSNWLSMMLPRLHLAKTLLREDGVIFISIDDNEQ 239

Query: 112 FRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK---AKGYTFN 167
            ++  +   +         +  +     +   R F    E ++    S      K     
Sbjct: 240 AQLKLLCDEVFGAENFVSNIIWEKRYTRSNNARMFTTLTEQIVCYRKSDNLQELKEPRNE 299

Query: 168 YDALKAANEDVQMRSDWLIPICSG---SERLRNKDGEKLHPT 206
                  N D   R  W    C      E+  N   E  +P 
Sbjct: 300 KADSTYTNPDNDPRGVWTSVSCVNPATKEQRPNLSYEIQNPH 341


>gi|206600139|ref|YP_002241644.1| gp60 [Mycobacterium phage Pacc40]
 gi|206287227|gb|ACI12571.1| gp60 [Mycobacterium phage Pacc40]
          Length = 1341

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 37/79 (46%)

Query: 196  RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
             + +G  +        ++ R++   + PG+++ DPF G GT    A KL R   G+E+  
Sbjct: 1253 FHAEGLVVKNCPLQFDIVDRLITRFSNPGELVFDPFGGLGTVPLRALKLGRRGRGVELNP 1312

Query: 256  DYIDIATKRIASVQPLGNI 274
             Y   A K + + +   ++
Sbjct: 1313 GYYFDAVKYLQAEERQRDM 1331



 Score = 41.9 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 16/52 (30%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
             + +   E +   SVDLI    P++          D    D     W +  
Sbjct: 655 NNDCVPETESMDDNSVDLIVTSIPFSNHYEYTPSYNDFGHTDDNAHFWAQMD 706


>gi|325525531|gb|EGD03327.1| type III DNA modification methyltransferase [Burkholderia sp.
           TJI49]
          Length = 668

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 55/154 (35%), Gaps = 17/154 (11%)

Query: 17  FEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLN-------GQLYRPDHSLVD 66
            + +  +I+G+++ V++ L    A  V L++ DPPYN   +           R   ++  
Sbjct: 95  DDTRHLVIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTGSDFVYPDDFSDSIRHYLAMTG 154

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLK-------PNGTLWVIGSYHNIFRIGTMLQ 119
                  + ++ EA   F   WL      LK         G + V    H +  +  ML+
Sbjct: 155 QTEGGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSDEGLIVVHIDEHEVHALVLMLR 214

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
            +        V       P    R     HE+L+
Sbjct: 215 EIFGEENELGVAVWDKRNPKGDARGIAYQHESLV 248



 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 72/216 (33%), Gaps = 19/216 (8%)

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA---------CRRVLKPNGTLWVIGSYH 109
           R    ++DA  D+  +  + +      RAW+ A             L  +G ++ + S  
Sbjct: 268 RNAQRMLDAARDAMYRSGTPKDAAKAFRAWMKAQTNLSGGEAMYDRLSEDGRVYRLVS-M 326

Query: 110 NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
                    +     +++ +  +        RG R   A    +      +         
Sbjct: 327 AWPNKKKAPEEYFTPLIHPVTGKP--CAMPARGWRNPPATMQALLERGQIEFGADETTQP 384

Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
                 ++    +   +    GS+    K         KP    + ++   T+  DI+LD
Sbjct: 385 QRIYYLDENMYENVPSVLPFGGSDDALLKTLGIPFEQPKPVDFAAAVIGWCTRGDDIVLD 444

Query: 230 PFFGSGTSGAVAKKLR------RSFIGIEMKQDYID 259
            F GSG++G    ++       R +I +++  + +D
Sbjct: 445 CFAGSGSTGHAVMQVNATDGGARRYIMVQL-PEALD 479


>gi|302206582|gb|ADL10924.1| Putative site-specific DNA-methyltransferase (adenine-specific)
           [Corynebacterium pseudotuberculosis C231]
 gi|308276825|gb|ADO26724.1| Putative site-specific DNA-methyltransferase [Corynebacterium
           pseudotuberculosis I19]
          Length = 656

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 60/161 (37%), Gaps = 18/161 (11%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPD-----H 62
            +Q    + ++  I G+++  L+ L       V  I+ DPPYN   +G +Y  D      
Sbjct: 86  NSQPENKDSENIYIVGDNLDALKHLLGSYAGKVKCIYIDPPYNTGSDGFVYNDDFGFTIP 145

Query: 63  SLVDAVTDSWDKF---------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
            LV+ V  + D+          SS  A+  F    L   + +L  +G +++    +    
Sbjct: 146 QLVEKVGLTEDEAERVLDLRGKSSHSAWLTFMYPRLQLAKELLADDGVIFISIDDNEQAN 205

Query: 114 IGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           +  +   +         +  ++NP            H+ L+
Sbjct: 206 LRMLCDEVFGEQGFVASITVRNNPRGRQSNTSIAPVHDYLL 246



 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 23/141 (16%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEMKQDYID- 259
            KP  LL  +L   T  G +I+D F GSGT+   + +      L R FI +++  + ID 
Sbjct: 410 PKPTPLLKEVLQLGTPQGGLIVDFFSGSGTTAEASWRLSAETGLDRQFIMVQL-PEVIDG 468

Query: 260 -----IATKRIAS----VQPLGNIELTVLTGKRTEP---RVAFNLLVERGLIQPGQILTN 307
                 A     +    +  +G   +   + K  E     + +   + R     GQ+L +
Sbjct: 469 ESGSKTAKAAYKAGYRTIDEIGRERIRRASAKIKEETGADIDYGFKLYRLNEPSGQVLDD 528

Query: 308 AQGNISATVCADGTLISGTEL 328
               ++     DGTL++G  +
Sbjct: 529 L---LTFDPKQDGTLLAGDYV 546


>gi|300858879|ref|YP_003783862.1| hypothetical protein cpfrc_01462 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686333|gb|ADK29255.1| hypothetical protein cpfrc_01462 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302331137|gb|ADL21331.1| Putative methyltransferase [Corynebacterium pseudotuberculosis
           1002]
          Length = 656

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 60/161 (37%), Gaps = 18/161 (11%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPD-----H 62
            +Q    + ++  I G+++  L+ L       V  I+ DPPYN   +G +Y  D      
Sbjct: 86  NSQPENKDSENIYIVGDNLDALKHLLGSYAGKVKCIYIDPPYNTGSDGFVYNDDFGFTIP 145

Query: 63  SLVDAVTDSWDKF---------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
            LV+ V  + D+          SS  A+  F    L   + +L  +G +++    +    
Sbjct: 146 QLVEKVGLTEDEAERVLDLRGKSSHSAWLTFMYPRLQLAKELLADDGVIFISIDDNEQAN 205

Query: 114 IGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           +  +   +         +  ++NP            H+ L+
Sbjct: 206 LRMLCDEVFGEQGFVASITVRNNPRGRQSNTSIAPVHDYLL 246



 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 23/141 (16%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEMKQDYID- 259
            KP  LL  +L   T  G +I+D F GSGT+   + +      L R FI +++  + ID 
Sbjct: 410 PKPTPLLKEVLQLGTPQGGLIVDFFSGSGTTAEASWRLSAETGLDRQFIMVQL-PEVIDG 468

Query: 260 -----IATKRIAS----VQPLGNIELTVLTGKRTEP---RVAFNLLVERGLIQPGQILTN 307
                 A     +    +  +G   +   + K  E     + +   + R     GQ+L +
Sbjct: 469 ESGSKTAKAAYKAGYRTIDEIGRERIRRASAKIKEETGADIDYGFKLYRLNEPSGQVLDD 528

Query: 308 AQGNISATVCADGTLISGTEL 328
               ++     DGTL++G  +
Sbjct: 529 L---LTFDPKQDGTLLAGDYV 546


>gi|208434513|ref|YP_002266179.1| type III R-M system modification enzyme [Helicobacter pylori G27]
 gi|208432442|gb|ACI27313.1| type III R-M system modification enzyme [Helicobacter pylori G27]
          Length = 624

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 59/168 (35%), Gaps = 30/168 (17%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-------- 69
           + II G+++  L+ L +   + + +I+ DPPYN   +  +Y PD+   D           
Sbjct: 102 NAIIIGDNLDALKLLKSAYSEKIKMIYIDPPYNTGNDDFIY-PDNFRQDYQKILREVGLM 160

Query: 70  --DSWDKFSSFEA---------------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
             D   K    E+               + +F    L   R +LK +G +++    +   
Sbjct: 161 EIDENGKEIESESLKFFKNTQGSGTHSGWLSFMLPRLKLARDLLKEDGVIFISIDDNECT 220

Query: 113 RIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
            +  +   +           RK+    N         HE L+  + + 
Sbjct: 221 NLKILCDEIFGERNFVADFIRKTKSTTNDAKMGVNYQHEFLLCYAKNK 268



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 22/134 (16%)

Query: 207 QKPEALLSRILVSST--KPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDY- 257
            K    + +I++ ST     DIILD F GSGT+     +L       R FI +++ ++  
Sbjct: 406 PKGVEFMKKIILHSTSTNSDDIILDFFAGSGTTAHAVMELNAEDKGNREFILVQIDEEIK 465

Query: 258 -----IDIATKRIASVQPLGNIELTVLTGKRTEPRV---AFNLLVERGL----IQPGQIL 305
                 D     + S +P+ + ++T+   KR   ++   + +  ++ G     +Q    L
Sbjct: 466 EDKSTYDFCKNVLKSAKPVIS-DITIERVKRAAQKIIQLSKDSGLDLGFKVYTLQDKAQL 524

Query: 306 TNAQGNISATVCAD 319
           TN +  I+    +D
Sbjct: 525 TNDKEGITLFNRSD 538


>gi|291544089|emb|CBL17198.1| Adenine specific DNA methylase Mod [Ruminococcus sp. 18P13]
          Length = 557

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 11/128 (8%)

Query: 20  KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            + +I+G++++ L+ L       +DLI+ DPPYN   +  +Y  +        D  D F 
Sbjct: 88  MNFLIEGDNLASLKLLEKTHKGKIDLIYIDPPYNTGASNWIYDNN------YVDGNDLFK 141

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSN 135
             + + +  ++ L   RR+L   G L      +    +  +L  +       D +    N
Sbjct: 142 HSK-WLSMMKSRLEIARRLLTTKGVLICAIDENESATLRLLLDEVFGVNYEYDCITIVHN 200

Query: 136 PMPNFRGR 143
           P       
Sbjct: 201 PRGIQGKN 208



 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 13/92 (14%)

Query: 222 KPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYI--DIATKRIASVQPLGN 273
            P  I+LD F GSGT+G    KL       R FI     ++ I  D+  +RI  V     
Sbjct: 388 MPNAIVLDFFAGSGTTGHAVMKLNAEDGGNRRFILCTNNENNICRDVTYERIKRV----- 442

Query: 274 IELTVLTGKRTEPRVAFNLLVERGLIQPGQIL 305
           I+           +V +  + ER   +    L
Sbjct: 443 IDKEGYAASLKYYKVDYIPISERMYYEYADEL 474


>gi|186681524|ref|YP_001864720.1| hypothetical protein Npun_F1051 [Nostoc punctiforme PCC 73102]
 gi|186463976|gb|ACC79777.1| conserved hypothetical protein [Nostoc punctiforme PCC 73102]
          Length = 498

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 34/55 (61%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           +KP   L+ ++ + TK GDI+LDPF GSG     A   +R FIGI++    I+++
Sbjct: 41  KKPIEPLAFLIENLTKKGDIVLDPFLGSGLVAREAAIRQRRFIGIDINPIAIELS 95



 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 44/108 (40%), Gaps = 16/108 (14%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPP-------------YNLQLNGQLYRPDHSLVDAVT 69
           II+G++  +L   P  ++ L+  DPP             +N  ++ +    D S    V+
Sbjct: 324 IIQGDNRKILNNCPDGTISLVLTDPPHSDRIPYLELSEMWNSLIDKK---SDFSHEIVVS 380

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
           ++  +    + Y      ++    R+LKP+G L +  +  +      +
Sbjct: 381 NARIRLKDKKLYLHEMTEFMQTATRILKPSGILALFFNARDAASWKFL 428


>gi|325925792|ref|ZP_08187164.1| DNA modification methylase [Xanthomonas perforans 91-118]
 gi|325929114|ref|ZP_08190263.1| DNA modification methylase [Xanthomonas perforans 91-118]
 gi|325540532|gb|EGD12125.1| DNA modification methylase [Xanthomonas perforans 91-118]
 gi|325543778|gb|EGD15189.1| DNA modification methylase [Xanthomonas perforans 91-118]
          Length = 354

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 27/54 (50%)

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           +   +   ++PG+ + DPF G G++   A    R+  G+E+      +A  R+A
Sbjct: 42  MRPFVRHFSRPGEQVFDPFCGFGSTLLAAALEGRNAHGMEIDPARAQLAHTRLA 95


>gi|313668659|ref|YP_004048943.1| type iii restriction-modification system methyltransferase
           [Neisseria lactamica ST-640]
 gi|313006121|emb|CBN87582.1| putative type iii restriction-modification system methyltransferase
           [Neisseria lactamica 020-06]
          Length = 634

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 58/148 (39%), Gaps = 10/148 (6%)

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY---TFNYDALKAANEDVQMRSD 183
            +++   +N       +      +  ++   + + K      F  +           + D
Sbjct: 319 GEVITHPTNAWKFEHSKYLSYQEDNRLYWGKNGENKYPRLKKFLTEMDGGMVPVDLWKHD 378

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGSGTSGAVAK 242
                 + S+ L +  G+ +    KP +L+ R+L  ++   D IILD F GSGT+     
Sbjct: 379 ETGTTDAASKELESMIGKGIFTFPKPPSLIKRMLKIASNKKDSIILDFFSGSGTTAHAVM 438

Query: 243 KLR------RSFIGIEMKQDYIDIATKR 264
           +L       R FI +++ ++  + +  R
Sbjct: 439 QLNAEDGGSRRFICVQLPEETDEKSEAR 466



 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 69/222 (31%), Gaps = 35/222 (15%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLY-------RPDHSLVDAVT 69
           ++  I+  ++  L+ L    A SV +I+ DPPYN   +  +Y       R +++     T
Sbjct: 96  QNVFIEAENLEALKILQKSYAGSVKMIYIDPPYNTGNDSFVYPDKFSESREEYARRVGDT 155

Query: 70  DS-------------W-----DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
           D              W     D       + +     L   + +L+ +G +++    +  
Sbjct: 156 DDAGYLKRDGVFQGAWRKNGKDSGHYHSNWLSMMLPRLHLAKTLLREDGVIFISIDDNEQ 215

Query: 112 FRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK---AKGYTFN 167
            ++  +   +         +  +     +   R F    E ++    S      K     
Sbjct: 216 AQLKLLCDEVFGAENFVSNIIWEKRYTRSNNARMFTTLTEQIVCYRKSDNLQELKEPRNE 275

Query: 168 YDALKAANEDVQMRSDWLIPICSG---SERLRNKDGEKLHPT 206
                  N D   R  W    C      E+  N   E  +P 
Sbjct: 276 KADSTYTNPDNDPRGVWTSVSCVNPATKEQRPNLSYEIQNPH 317


>gi|229141872|ref|ZP_04270399.1| Adenine specific DNA methylase Mod-like protein [Bacillus cereus
           BDRD-ST26]
 gi|228641628|gb|EEK97932.1| Adenine specific DNA methylase Mod-like protein [Bacillus cereus
           BDRD-ST26]
          Length = 415

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 81/235 (34%), Gaps = 35/235 (14%)

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           ++   D   D   K+   +  D  + ++  +    L+ +G ++  G          + + 
Sbjct: 8   NYKYEDEFVDERGKYKLNQTLDYDSLSYSKSLDYPLEIDGEIFYPGGSKEKH----LERQ 63

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
                  D  WR +  M  +           +I       A+ YT  Y   K      + 
Sbjct: 64  SGKHKRADWAWRWNKEMFKYGYENG----FVVIKRKKDGTARIYTKTYLNAKIEKRKSKG 119

Query: 181 RSDWLIPICSGSE----------RLRNKDGEKL---------HPTQKPEALLSRILVSST 221
            +++ I     ++          +  N + +K              KP  L+ R++    
Sbjct: 120 MTEYFIKYVHKTKPLSSIELTLNKYSNDNAKKDLSVFNLQDEFDYSKPVDLIKRLISCHY 179

Query: 222 KPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYI--DIATKRIASV 268
            P   +LD F GSGT+G    +L       R FI     Q+ I  +I  KR++S+
Sbjct: 180 NPDAYVLDFFAGSGTTGQAILELNKERGGNRKFILCTNNQNNICREITYKRVSSL 234


>gi|316984046|gb|EFV63024.1| type III restriction-modification system EcoPI enzyme mod
           [Neisseria meningitidis H44/76]
          Length = 478

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 7/106 (6%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------ 244
           G++ + +  G K+    KP  L+  ++  S+K  D+ILD F GSGT+     +L      
Sbjct: 226 GTKEITDLFGSKIFTFPKPSQLIKFLVSISSKSNDLILDFFAGSGTTAHAVMQLNAEGQN 285

Query: 245 -RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
             R +I +++ +   + +  R A    + +I    +     + RV 
Sbjct: 286 GNRRYICVQLPEKTAEKSEARKAGYPTIFDITKARIEKAAAKIRVE 331


>gi|309791210|ref|ZP_07685742.1| DNA methylase N-4/N-6 domain-containing protein [Oscillochloris
           trichoides DG6]
 gi|308226772|gb|EFO80468.1| DNA methylase N-4/N-6 domain-containing protein [Oscillochloris
           trichoides DG6]
          Length = 365

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 14/110 (12%)

Query: 170 ALKAANEDVQMRSDWLIPICSGS-ERLRNKDGEKLHPT--------QKPEALLSRILVSS 220
           A    N+    R      I + S   +  +D   +H          Q P  +L R     
Sbjct: 103 ATSPINDLNLNRWKEYEDILTDSLWMIDRRDSSGVHTAGYWGNFIPQIPYQMLRR----Y 158

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
           TK GD +LD F GSGT+    ++L R  +GIE++   +  A + + + +P
Sbjct: 159 TKRGDWVLDTFAGSGTTLIEGQRLGRHTLGIELQPRMVAHAKQ-LVAAEP 207


>gi|182682260|ref|YP_001830420.1| hypothetical protein XfasM23_1742 [Xylella fastidiosa M23]
 gi|182632370|gb|ACB93146.1| hypothetical protein XfasM23_1742 [Xylella fastidiosa M23]
 gi|307578536|gb|ADN62505.1| hypothetical protein XFLM_02530 [Xylella fastidiosa subsp.
          fastidiosa GB514]
          Length = 83

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%)

Query: 4  KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
          K +  + +  NS    +  I  G+ I V++ LPA+S  +I   PPYNL+ +      D  
Sbjct: 21 KAAKKLPKGDNSARNLRGTIHSGDCIKVMQTLPAESFRVIVTSPPYNLKNSTGNGMKDGR 80


>gi|60680649|ref|YP_210793.1| putative modification enzyme of type III restriction-modification
           system [Bacteroides fragilis NCTC 9343]
 gi|60492083|emb|CAH06846.1| putative modification enzyme of type III restriction-modification
           system [Bacteroides fragilis NCTC 9343]
          Length = 635

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 52/146 (35%), Gaps = 27/146 (18%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIE 252
           DG+K+    KP  L+ RI+   +    IILD F GS T+     +        R FI ++
Sbjct: 390 DGKKVFDYPKPVELIKRIISLYSDSNSIILDFFSGSATTAHAVMEQNALDGGCRQFIMVQ 449

Query: 253 MKQDY--------------IDIATKRIASVQPLGNIELTVLTGK-RTEPRVAFNLLVERG 297
           +++D+               D A +RI         +  + T    T  RV    L E  
Sbjct: 450 LEEDFSESSDGYKMGFKTICDAAKERIRRAGAKIKADSPLTTQNIDTGFRV--FRLDESN 507

Query: 298 L----IQPGQILTNAQGNISATVCAD 319
                I P     +     +  +  D
Sbjct: 508 YEEVSISPNDYQQDQLNLFADNIKQD 533



 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 68/173 (39%), Gaps = 27/173 (15%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPD---- 61
           + E+       K+  I+G+++ VL+ L       V +I+ DPPYN   N  +Y  D    
Sbjct: 92  VVEDSMDWDNTKNIYIEGDNLEVLKLLQRSYMGKVKMIYIDPPYNTG-NDFVYHDDFART 150

Query: 62  --------------HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
                          +     TD+  KF S   + +   + LL  R +L  +G +++   
Sbjct: 151 AAEEDLEAGSVDELGNRFRKNTDTNGKFHS--DWCSMIYSRLLVARSLLTEDGVIFISID 208

Query: 108 YHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
            +    +  +   +      L  IVW ++    N   + F  +H+ ++  + +
Sbjct: 209 DNEQRNLKNICDEVFGSSNFLAQIVWERAYSPINLM-KHFSPSHDYVLCYAKN 260


>gi|294627629|ref|ZP_06706211.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292597981|gb|EFF42136.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 354

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 26/54 (48%)

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           +   +   ++PG+ + DPF G G+S   A    R+  G+E+      +A  R+ 
Sbjct: 42  MRPFVRHFSRPGEQVFDPFCGFGSSLLAAALEGRNAHGMEIDPARAQLARARLQ 95


>gi|332994839|gb|AEF04894.1| type III restriction-modification system methyltransferase
           [Alteromonas sp. SN2]
          Length = 628

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 85/233 (36%), Gaps = 38/233 (16%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQ----LNGQLYRPDHSLVDA---VTD 70
           +  I+G+++  L+ L       +DLIF DPPYN                  +++   V D
Sbjct: 99  NLFIEGDNLDALKLLQESYLGKIDLIFIDPPYNTGSDFIYKDNFSVEKSKFLESDGQVDD 158

Query: 71  SWDKFSS--------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
             ++  S          ++ +   + L   + +L  NG ++V      +  +  +L  + 
Sbjct: 159 LNNRLMSNTNADGRFHSSWLSMMFSRLKLAKNLLSENGAIFVAIDDGEVANVRKLLDEIF 218

Query: 123 FW---ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF---NYDALKAANE 176
                I N +   K  P  +  G      H  +I  S S   K       +       N 
Sbjct: 219 GRDNLIANFVWQSKDTPGNDSTG--VAQTHNHVIAFSKSNSFKPNLLERSDKQIANYKNP 276

Query: 177 DVQMRSDWLIPICSGSE-------RLRNKDGEKLHP-----TQKPEALLSRIL 217
           D   R  WL    + SE        L + DG +++P      ++P+ ++ +++
Sbjct: 277 DDDPRGVWLATPLTRSEFRERDFYPLVSPDGREVYPPDGTCWRRPKDVIEKLI 329



 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 65/171 (38%), Gaps = 20/171 (11%)

Query: 106 GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
           G +       +  +  +F+ L     R+  P      RR ++  E LI  + +    G  
Sbjct: 282 GVWLATPLTRSEFRERDFYPLVSPDGREVYPPDGTCWRRPKDVIEKLI--NENRLWWGVK 339

Query: 166 FNYDALKAAN-----EDVQMRSDWLIPICSGSERLRNK------DGEKLHPTQKPEALLS 214
            N +           +D  +   W     +GS R  N       DG+K   T KP  L+ 
Sbjct: 340 GNANFPMEKKFLSETKDGVVNQSWWPYEFAGSTRNANAEIKKLFDGKKPFDTPKPTQLIK 399

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYID 259
           R++   T    ++LD F GS T+     +        R+FI +++  +Y +
Sbjct: 400 RVIDMCTSKDSVVLDFFAGSSTTAQSVMECNIRDEGKRTFIMVQI-PEYCN 449


>gi|171316876|ref|ZP_02906085.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia ambifaria MEX-5]
 gi|171097957|gb|EDT42775.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia ambifaria MEX-5]
          Length = 668

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 21/156 (13%)

Query: 17  FEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLN---------------GQLY 58
            + +  +I+G+++ V++ L    A  V L++ DPPYN   +                   
Sbjct: 95  DDTRHLLIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTGSDFVYPDDFSDSIRHYLAMTG 154

Query: 59  RPDHSLV-DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
           + D  +     T++  +F +   +       L     +L   G + V    H +  +  M
Sbjct: 155 QTDGGVKRSTNTEANGRFHT--DWLNMMYPRLKLAHALLSDEGLIAVHIDEHEVHALVLM 212

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           L+ +        V       P    R     HE+L+
Sbjct: 213 LREIFGEENELGVAVWDKRNPKGDARGVAYQHESLV 248



 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 68/199 (34%), Gaps = 14/199 (7%)

Query: 66  DAVTDSWDKFSSFEAYDAFTRA-----WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           DAV  S +   + +AY A+ +A             L  +G ++ + S           + 
Sbjct: 279 DAVYRSGNAKDAQKAYRAWMKAQTNLSGGEVMYDRLSADGRVYRLVS-MAWPNKKKAPEE 337

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
               +++ +  +        RG R   A    +      +               ++   
Sbjct: 338 YFTPLIHPVTGKP--CAMPARGWRNPPATMQALIERGQIEFGPDETTQPQRIYYLDENMY 395

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
            +   +   +GS+    K         KP    + ++   T+  DI+LD F GSG++G  
Sbjct: 396 ENVPSVLPFAGSDDALLKTLGIPFDQPKPVDFAAAVIGWCTRGDDIVLDCFAGSGSTGHA 455

Query: 241 AKKLR------RSFIGIEM 253
             ++       R +I +++
Sbjct: 456 VMQVNATDGGARRYILVQL 474


>gi|261867950|ref|YP_003255872.1| putative type III restriction-modification system modification
           protein [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413282|gb|ACX82653.1| putative type III restriction-modification system modification
           protein [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 148

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 7/63 (11%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY 58
             KN  A  EN NS    ++ +I+G+++ VL+ L       V +I+ DPPYN   +G +Y
Sbjct: 80  EDKNHNAKPENANS----QNLLIQGDNLDVLKHLKNAYTNKVKMIYIDPPYNTGSDGFVY 135

Query: 59  RPD 61
           + D
Sbjct: 136 QDD 138


>gi|115289078|gb|ABI85555.1| M.Hin1056ModP-3 [Haemophilus influenzae]
          Length = 324

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 17/107 (15%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       + LI+ DPPYN   +G  Y              DKF +
Sbjct: 207 NLIIKGNNLIALHSLAKQFKGKIKLIYIDPPYNTGNDGFKY-------------NDKF-N 252

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
              +  F +  L   + +L  +G ++V    +    +  ++  L   
Sbjct: 253 HSTWLTFMKNRLEIAKTLLADDGVIFVQCDDNEQAYLKILMDELFHH 299


>gi|325923712|ref|ZP_08185331.1| DNA modification methylase [Xanthomonas gardneri ATCC 19865]
 gi|325545798|gb|EGD17033.1| DNA modification methylase [Xanthomonas gardneri ATCC 19865]
          Length = 354

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 25/54 (46%)

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           +   +   + PG+ + DPF G G++   A    R+  G+E+      +A  R+ 
Sbjct: 42  MRPFVRHFSAPGEQVFDPFCGFGSTLLAAAMEGRNAHGMEIDPARAHLARTRLQ 95


>gi|237713118|ref|ZP_04543599.1| methyltransferase [Bacteroides sp. D1]
 gi|237722738|ref|ZP_04553219.1| methyltransferase [Bacteroides sp. 2_2_4]
 gi|262409491|ref|ZP_06086033.1| methyltransferase [Bacteroides sp. 2_1_22]
 gi|229446776|gb|EEO52567.1| methyltransferase [Bacteroides sp. D1]
 gi|229448548|gb|EEO54339.1| methyltransferase [Bacteroides sp. 2_2_4]
 gi|262352703|gb|EEZ01801.1| methyltransferase [Bacteroides sp. 2_1_22]
          Length = 610

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 51/139 (36%), Gaps = 10/139 (7%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
             +I+G+++  L  L       +D+I+ DPPYN      +Y       D + D  D +  
Sbjct: 74  HILIEGDNLEALTSLAYTHEGKIDVIYIDPPYNTGNKDFVYN------DCIVDKEDSYRH 127

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            + + +F    L   +++L   G +++    +   ++  +   +             +  
Sbjct: 128 SK-WLSFMNKRLRIAKQLLSDRGVIFISIDDNEQAQLKLLCDEVFGNNNFITNIIWQSTA 186

Query: 138 PNFRGRRFQNAHETLIWAS 156
            +  G       E ++  +
Sbjct: 187 GSNTGNEIVTTTEYVLVYT 205



 Score = 43.4 bits (101), Expect = 0.052,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 50/132 (37%), Gaps = 17/132 (12%)

Query: 150 ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW-------LIPICSGSERLRNKDGEK 202
           + +++     +   Y   Y  +  +N  V   + +       L     G+  + N    +
Sbjct: 294 DFIVFKKNKNEWAVYCKRYQKVDNSNRQVDRTTPYRNLITSDLFNTAQGTAEIANIFAIR 353

Query: 203 LHPTQKPEALLSRILVSS--TKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMK 254
                KP   +  +L S+  T P  ++LD F GSGT+     +L       R  I +   
Sbjct: 354 PFAFPKPSTFVKFLLSSAVVTSPNAMVLDFFAGSGTTLHATMQLNAEDGGHRKCILVTNN 413

Query: 255 QDYI--DIATKR 264
           ++ I  ++  +R
Sbjct: 414 ENNICEEVTYER 425


>gi|332798821|ref|YP_004460320.1| adenine-specific DNA-methyltransferase [Tepidanaerobacter sp. Re1]
 gi|332696556|gb|AEE91013.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Tepidanaerobacter sp. Re1]
          Length = 637

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 69/197 (35%), Gaps = 23/197 (11%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQL----------NG 55
           + E+  S  + ++  I+G+++ VL+ L       +  I+ DPPYN             + 
Sbjct: 87  VKEDSVSWEDTENLYIEGDNLEVLKLLQESYLNKIKCIYIDPPYNTGKDFIYKDNFTQDK 146

Query: 56  QLYRPDHSLVDAVTDSWDKFSSFE-----AYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
             Y  +   VD   +   + + +       +       L   R +L  +G ++V    + 
Sbjct: 147 DEYAEESGQVDEDGNRLFQNTEYNGRFHSDWLTMMYPRLKLARNLLSEDGVIFVSIDDNE 206

Query: 111 IFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
           +  +  +   +      +N  VWRKS    N            L++A      K   FN 
Sbjct: 207 VHNLRKICDEIFGERNFVNVFVWRKSKGSGNDSKYIIVETEYILLYAKNLENVK---FNN 263

Query: 169 DALKAANEDVQMRSDWL 185
                 +   + + ++ 
Sbjct: 264 QIKSIDDSKFKYKDEYF 280



 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 83/249 (33%), Gaps = 32/249 (12%)

Query: 50  NLQLNGQLYRPDHSLVDAVTDSWDKFSSF--EAYDAFTRAWLLACRRVLK-PNGTLWVIG 106
           N++ N Q+   D S      + +++   +  E  D  ++ ++ +    ++ P+GTL    
Sbjct: 258 NVKFNNQIKSIDDSKFKYKDEYFEERGGYNLEKLDRGSKGYVESLDFGIEAPDGTLVFPN 317

Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
           + +  F       +   W+ +               ++ Q+  +     +          
Sbjct: 318 NRNRQFN------DGWRWMWSKAKVEWGIKNGYIVVKKGQD--DKWNVYNKVYAKVDNEG 369

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
           N         +     + ++ I +  E ++   G       KP  LL  +L       ++
Sbjct: 370 NKIIRTKLYRNHIGFEENILNIQANFE-MKRLFGNAYFSFPKPTTLLKHLLNMFYLNDEV 428

Query: 227 ILDPFFGSGTSGAVAKKL------RRSFIGI-------EMKQDY-------IDIATKRIA 266
           ILD F GS T+     +L       R +I +       E  + Y        +I  +RI 
Sbjct: 429 ILDFFSGSATTAHAVMELNAEDGGGRKYIMVQLPEPCDEKSEAYKAGFKNIAEIGKERIR 488

Query: 267 SVQPLGNIE 275
                 N E
Sbjct: 489 RAGKKINEE 497


>gi|315619294|gb|EFU99855.1| DNA methylase domain protein [Escherichia coli 3431]
          Length = 40

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYN 50
          ++I  + +  ++ LP  SVDLI  DPPY 
Sbjct: 11 ELINADCLEFIQTLPENSVDLIVTDPPYF 39


>gi|209884695|ref|YP_002288552.1| DNA methylase N-4/N-6 domain protein [Oligotropha carboxidovorans
           OM5]
 gi|209872891|gb|ACI92687.1| DNA methylase N-4/N-6 domain protein [Oligotropha carboxidovorans
           OM5]
          Length = 856

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 6/122 (4%)

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL------R 196
           RR++    + ++      A   T + +        +     W   + +   R+      +
Sbjct: 705 RRWREHSLSQVYDFEHHVAVSDTLDANNQLPPTFMLLPPHSWHPDVETDVARMRTLNGLQ 764

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           +  G +LH       ++ R +   T PG+ + DPF G  T    A  L+R  IG+E+   
Sbjct: 765 HAKGRELHLCPLQFDIVDRAITQYTMPGETVFDPFGGLMTVPYRAIALKRRGIGVELSPS 824

Query: 257 YI 258
           Y 
Sbjct: 825 YF 826



 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 27/89 (30%), Gaps = 10/89 (11%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           +  + +     +   SVDLI    P++ Q        D    D      D    F   D 
Sbjct: 496 VNNDCVEETRSMAGDSVDLIVTSIPFSTQYEYTPSYNDFGHTD------DDVHFFRQMDF 549

Query: 84  FTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
            T   L    R+LKP     +      + 
Sbjct: 550 LTPELL----RILKPGRIAMIHCKDRIVP 574


>gi|308182435|ref|YP_003926562.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
           pylori PeCan4]
 gi|308064620|gb|ADO06512.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
           pylori PeCan4]
          Length = 390

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 53/140 (37%), Gaps = 17/140 (12%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
             K+    ++  L+++  +S+  I+ DPPYN + +   Y   H+                
Sbjct: 1   MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYEDAHT---------------- 44

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y+ + +  L+  + VLK +G +++    + +  I  +   +     N +    +     
Sbjct: 45  DYEKWIKEHLILAKAVLKQSGCIFISIDDNKMAEIKIIANEIFGT-RNFLGTFITKQATR 103

Query: 140 FRGRRFQNAHETLIWASPSP 159
              +     HE ++  + + 
Sbjct: 104 SNAKHINITHEYILSYAKNK 123



 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 11/107 (10%)

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           L + +         +    LK + ++     D+      G++ L     + L  T KP A
Sbjct: 235 LYYQNRLIFKNNRPYEKYYLKESQDNCLSVLDFY--SRQGTKDLEKLGLKGLFKTPKPVA 292

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           L+  +L+ ST    IILD F GSGT+             IE+ +DY 
Sbjct: 293 LIKYLLLCSTPKDSIILDFFAGSGTTAQAV---------IEVNKDYY 330


>gi|313895500|ref|ZP_07829056.1| DNA (cytosine-5-)-methyltransferase [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975626|gb|EFR41085.1| DNA (cytosine-5-)-methyltransferase [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 646

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 54/145 (37%), Gaps = 11/145 (7%)

Query: 21  DKIIKGN---SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
             +I+ +   ++ +LE L  + VD I+ DPPYN          D    +   D  D +  
Sbjct: 70  HTLIEADNYHALQLLEYLYPQKVDCIYIDPPYNTGAK------DWKYNNDYVDGSDAYRH 123

Query: 78  FEAYDAFTRAWLLACRRVLKP-NGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            + + +  +  L   +++L P +  L V+        +G +L+ L       +V    N 
Sbjct: 124 SK-WLSMMQKRLELAKKLLNPVDSVLIVMIDEKEYLHLGCLLEELFPETEMQMVSSAING 182

Query: 137 MPNFRGRRFQNAHETLIWASPSPKA 161
               RG  F   +E          +
Sbjct: 183 KGVSRGNEFARVNEYAFIVRIGKCS 207



 Score = 40.0 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 36/112 (32%), Gaps = 11/112 (9%)

Query: 184 WLIPICSGSE---RLRNKDGEKLHPTQKPEALLSRILVSST--KPGDIILDPFFGSGTSG 238
           W IP    +E   +  NK   K     K    +   +      KP  +I+D F GSGT+ 
Sbjct: 372 WWIPSHDATEFGSKELNKIIGKRFSFPKSLYAVHDTVRFFVANKPNALIVDFFAGSGTTL 431

Query: 239 AVAKKL------RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
                L       R  I +   +     A K        G+ +   L   R 
Sbjct: 432 HAVNLLNAEDGGNRRCILVTNNEVSESEAKKLTKEGHQPGDEKWEHLGIARY 483


>gi|42525618|ref|NP_970716.1| adenine-specific DNA modification methyltransferase [Treponema
           denticola ATCC 35405]
 gi|41815629|gb|AAS10597.1| adenine-specific DNA modification methyltransferase [Treponema
           denticola ATCC 35405]
          Length = 428

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 72/244 (29%), Gaps = 44/244 (18%)

Query: 1   MSQKNSLAINENQNSIF---EWKDKIIKGNSISVL----EKLPAKSVDLIFADPPYNLQL 53
           +  ++  +  EN+   F   + K+  I+ +++  L    +    K + +I+ DPPYN   
Sbjct: 20  LKNQSKFSFTENKVKSFNSEDAKNLYIESDNLYALLFLQKDYKDK-IKIIYIDPPYNTGK 78

Query: 54  NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
                              D F +   +  +    L   + +L  +G +++         
Sbjct: 79  KFTYA--------------DNFQTKTEWMNYLYVRLSLAKNLLTDDGLIFISIDDKTCPY 124

Query: 114 IGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW------------------ 154
           +  +L  +         +   ++     R +    +HE +I                   
Sbjct: 125 LRIILDEIFGTKNFISTLVWNNSTGGGLRKKHINTSHEYIILYAKDKTKVKPMTAPMPEK 184

Query: 155 ---ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
                    A G  F Y      N+    R  + I    G+  +           +    
Sbjct: 185 AKKMYKYKDADGRFFRYQQFAWKNKTDAKRQKYPIKTPDGNFIIPKAGYIYRFVEKSFFN 244

Query: 212 LLSR 215
           LL +
Sbjct: 245 LLEK 248



 Score = 43.4 bits (101), Expect = 0.058,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGSGTSGAVAKKL------RRSFIGIE 252
           G K+    KP +LL  +        D ++LD F GS T+     +L       R FI ++
Sbjct: 311 GAKIFDYAKPVSLLKYLFKLVPNSDDAVVLDFFSGSATTAHAVMELNAELNENRKFILVQ 370

Query: 253 MKQ 255
             +
Sbjct: 371 RGE 373


>gi|42526421|ref|NP_971519.1| type II DNA modification methyltransferase M.TdeIII [Treponema
           denticola ATCC 35405]
 gi|41816614|gb|AAS11400.1| type II DNA modification methyltransferase M.TdeIII [Treponema
           denticola ATCC 35405]
          Length = 535

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 11/105 (10%)

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSSTK--------- 222
             E +  + +W +      E    K   +LHP +      L+   L   T          
Sbjct: 77  WEETLGEKLNWTLSFEQYKEAETTKHVHRLHPYKGKFIPQLVEYFLDEHTDSFKQNVFFH 136

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            GD++LDPF GSGT+   A +L    IG+++ +    IA  +I +
Sbjct: 137 KGDVVLDPFCGSGTTLVQANELGIHAIGVDISEFNTVIANAKIQN 181


>gi|227824282|ref|ZP_03989114.1| type III restriction system methyltransferase [Acidaminococcus sp.
           D21]
 gi|226904781|gb|EEH90699.1| type III restriction system methyltransferase [Acidaminococcus sp.
           D21]
          Length = 629

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 77/232 (33%), Gaps = 24/232 (10%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQL 57
           + ++ S+  +    SI + ++  I+G+++  L+ L       V +I+ DPPYN   +  +
Sbjct: 81  LDREKSVGRDGTPGSI-DTENIYIEGDNLDALKLLQETYLGKVKMIYIDPPYNTGSDAFV 139

Query: 58  YRPDHSLV------------DAVTDSWDKFSSFEAYDAFTRAWLLA-------CRRVLKP 98
           Y  D S+             D     +D  ++ E+   F   WL          + +L  
Sbjct: 140 YDDDSSISGEEFAERSGQRDDDGNLLFDMRTNNESNGRFHTDWLNMLYPRLRIAKDLLSD 199

Query: 99  NGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP-MPNFRGRRFQNAHETLIWASP 157
           +G +++    +    +  +   +                 P    +   N+H+ ++  + 
Sbjct: 200 DGVIFISIDDYEQENLKKICSEIFGAENFIAQLVWERAFAPKNDAKYVSNSHDYVLMFAK 259

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
                         +A        +D      SG   ++       +P   P
Sbjct: 260 KIDNFKIGRLPRTEEANERYSNPDNDPRGVWQSGDLSVKTYSPSGDYPITTP 311



 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 20/80 (25%)

Query: 223 PGDIILDPFFGSGTSGAVAKKL------RRSFIGI-------EMKQDY-------IDIAT 262
             DI+LD F GS T+     ++       R FI +       E  + Y        +I  
Sbjct: 414 ENDIVLDFFSGSATTAHAVMQMNSEDGSNRKFILVQLPEVCDEKSEVYKAGYRTICEIGE 473

Query: 263 KRIASVQPLGNIELTVLTGK 282
           +RI         E  + T K
Sbjct: 474 ERIRRAGKKIKEESPLTTTK 493


>gi|148655107|ref|YP_001275312.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus sp.
           RS-1]
 gi|148567217|gb|ABQ89362.1| DNA methylase N-4/N-6 domain protein [Roseiflexus sp. RS-1]
          Length = 372

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           Q P  L+ R     T+ GD+++DPF GSGT+    ++L R  IG+E+    ++    
Sbjct: 156 QIPYQLMRR----YTRRGDLVIDPFAGSGTTLIEGRRLGRHTIGVELNPAVVEQTRA 208


>gi|134294161|ref|YP_001117896.1| adenine-specific DNA-methyltransferase [Burkholderia vietnamiensis
           G4]
 gi|134137318|gb|ABO53061.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia vietnamiensis G4]
          Length = 672

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 17/154 (11%)

Query: 17  FEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLN---GQLYRPDHSLVDAVTD 70
            + +  +I+G+++ V++ L    A  V L++ DPPYN   +      +        A+T 
Sbjct: 99  DDTRHLVIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTGSDFVYADDFSDSIRHYLAMTG 158

Query: 71  SWD----KFSSFEAYDAFTRAWLLACRRVLK-------PNGTLWVIGSYHNIFRIGTMLQ 119
             D    + ++ EA   F   WL      LK         G + V    H +  +  ML+
Sbjct: 159 QTDAGVKRNTNTEANGRFHTDWLNMMYPRLKLAHALLSDEGLIAVHIDEHEVHALVLMLR 218

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
            +        V       P    R     HE+L+
Sbjct: 219 EIFGEENELGVAVWDKRNPKGDARGIAYQHESLV 252



 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 70/205 (34%), Gaps = 15/205 (7%)

Query: 66  DAVTDSWDKFSSFEAYDAFTRA-----WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           DAV  S +   + +AY A+ +A             L  +G ++ + S             
Sbjct: 283 DAVYRSGNAKDAQKAYRAWMKAQTNLSGGEVMYDRLSADGRVYRLVS-MAWPNKKKAPDE 341

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
               +++ +  +        RG R   A    +      +               ++   
Sbjct: 342 YFTPLIHPVTGKP--CAMPARGWRNPPATMQALIERGQIEFGPDETTQPQRIYYLDENMY 399

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
            +   +   +GS+    K         KP    + ++   T+  DI+LD F GSG++G  
Sbjct: 400 ENVPSVLPFAGSDDALLKALGIPFDQPKPVDFAAAVIGWCTRGDDIVLDCFAGSGSTGHA 459

Query: 241 AKKLR------RSFIGIEMKQDYID 259
             ++       R +I +++  + +D
Sbjct: 460 VMQVNATDGGARRYILVQL-PEALD 483


>gi|150401989|ref|YP_001329283.1| DNA methylase N-4/N-6 domain-containing protein [Methanococcus
           maripaludis C7]
 gi|159906220|ref|YP_001549882.1| DNA methylase N-4/N-6 domain-containing protein [Methanococcus
           maripaludis C6]
 gi|150033019|gb|ABR65132.1| DNA methylase N-4/N-6 domain protein [Methanococcus maripaludis C7]
 gi|159887713|gb|ABX02650.1| DNA methylase N-4/N-6 domain protein [Methanococcus maripaludis C6]
          Length = 1019

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 72/219 (32%), Gaps = 17/219 (7%)

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           D  ++        K    + +  F +          + NGT    G   +   I   +  
Sbjct: 616 DGKIIAGAQKKESKRHKLQEFT-FPKGTRFEAEDGFELNGT---WGGVESTELINGRMMC 671

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN-----YDALKAAN 175
               +  D+  +      N   + F +  E  ++ + + K   + F+         +  +
Sbjct: 672 KGNKLAEDVTLKAGWTQLNQMNKYFYSDEE--VFDTKNQKVLEFFFSSTGKLKYVKEKTH 729

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
           E      + +      S  L N  G  +  T K   L+  I+        ++LD F GSG
Sbjct: 730 EIPSTVLNEMGTAGQASNDLTNILGYSIDSTPKSIKLMEFIINYLADESSLVLDFFAGSG 789

Query: 236 TSGAVAKKLR------RSFIGIEMKQDYIDIATKRIASV 268
           T+G     L       R FI +EM Q +  +   RI   
Sbjct: 790 TTGHAVINLNKEDNGKRKFILVEMGQYFDTVLKPRIQKA 828



 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 51/139 (36%), Gaps = 18/139 (12%)

Query: 23  IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +I   +   L  L     + +   + DPPYN   +G +Y+ +                  
Sbjct: 482 LINSENFQALNLLLEKYREKIKCCYIDPPYNKGYDGFIYKDNFK--------------HS 527

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           ++++     L   + +++ NG++ +         + T L ++     N +     N   +
Sbjct: 528 SWNSLIYDRLALSKNLIRENGSISISIDDDEEHNL-TALADMCLGNENRLAKLIWNRNHS 586

Query: 140 FRGRRFQNAHETLIWASPS 158
            +   F+  HE ++  S +
Sbjct: 587 AQAGFFKLYHEYVLCYSKN 605


>gi|21241447|ref|NP_641029.1| hypothetical protein XAC0676 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21106786|gb|AAM35565.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 354

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 26/54 (48%)

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           +   +   ++PG+ + DPF G G+S   A    R+  G+E+      +A  R+ 
Sbjct: 42  IRPFVRHFSRPGEQVFDPFCGFGSSLLAAALEGRNAHGMEIDPARAQLARARLQ 95


>gi|15645218|ref|NP_207388.1| adenine specific DNA methyltransferase (mod) [Helicobacter pylori
           26695]
 gi|2313713|gb|AAD07659.1| adenine specific DNA methyltransferase (mod) [Helicobacter pylori
           26695]
          Length = 598

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 58/170 (34%), Gaps = 30/170 (17%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-------- 69
           + II G+++  L+ L +   + + +I+ DPPYN   +  +Y PD+   D           
Sbjct: 76  NAIIIGDNLDALKLLKSAYSEKIKMIYIDPPYNTGNDEFIY-PDNFRQDYQKILREVGLM 134

Query: 70  --DSWDKFSSFEA---------------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
             D   K    E+               + +F    L   R +LK +G +++    +   
Sbjct: 135 EIDENGKEIESESLKFFKNTQGSGTHSGWLSFMLPRLKLARDLLKEDGVIFISIDDNECA 194

Query: 113 RIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
            +  +   +           RK+    N         HE L+  +     
Sbjct: 195 NLKILCDEIFGEDNFVGDFIRKTKSTTNDAKIGLNYQHEFLLCYAKDKNY 244



 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 15/97 (15%)

Query: 207 QKPEALLSRILVSST--KPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQD-- 256
            K    + +I++ ST    GDIILD F GSGT+     +L       R FI +++ ++  
Sbjct: 380 PKGVEFMKKIILHSTTPNEGDIILDFFAGSGTTVHAVMELNAEDKGNREFILVQIDEEIK 439

Query: 257 ----YIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
                 D   K + S +P+ + ++T+   KR   +++
Sbjct: 440 EDESAYDFCKKELKSAKPVIS-DITIERVKRAAQKIS 475


>gi|315145889|gb|EFT89905.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX2141]
          Length = 638

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 76/231 (32%), Gaps = 46/231 (19%)

Query: 17  FEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
            + ++  I G+++  L+ L       +D+I+ DPPYN   +  +Y+ +        D  +
Sbjct: 73  EKSENLFITGDNLEALKLLQESYLGKIDMIYIDPPYNTGKD-FVYQDNFKKTQKENDVSE 131

Query: 74  KFSSFE----------------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
                +                 +       L   R +L   G ++V    +    +  +
Sbjct: 132 GIIDEDGNRLVKNEKSNGRYHSDWLTMMYPRLKLARNLLSDTGVIFVSIDDNEQANLKLL 191

Query: 118 LQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
           +  +         +  ++NP      +    + E +I  +       +  N         
Sbjct: 192 MDEIFGEDNFIGNLSVENNPKGRKNAKFISVSSEFVILYAKKINESKFIENIPKR----- 246

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
                          +E +++++G  +H + K      RILV   K  D++
Sbjct: 247 --------------STEMIKDENGNFVHNSGK------RILVGENKFNDVV 277



 Score = 41.1 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 6/57 (10%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFI 249
           D  ++  + K   L+   L   +     + D F GSGT+     +L       R FI
Sbjct: 403 DNREVFSSPKSTDLIKLFLTLFSSKNITVFDFFAGSGTTADSVMQLNAEDGGNRKFI 459


>gi|302866307|ref|YP_003834944.1| DNA methylase N-4/N-6 domain-containing protein [Micromonospora
           aurantiaca ATCC 27029]
 gi|302569166|gb|ADL45368.1| DNA methylase N-4/N-6 domain protein [Micromonospora aurantiaca
           ATCC 27029]
          Length = 332

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 2/112 (1%)

Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL--HPTQKPEALLSRILVSS 220
            +T +      A    +  S W     +G  + R +   +   HP +   A+ +  + + 
Sbjct: 23  PFTIDSIGGHRAAAGPEGLSVWATAQATGPVQRRGRYVRESVQHPARMLPAIAAHAVTAY 82

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
           T+PGD++LDP  G GT+   A    R  IG+E +  + DIA   I      G
Sbjct: 83  TQPGDLVLDPMCGIGTTLVEAIHSGRDAIGVEYESRWSDIADANIKHAHTQG 134



 Score = 42.3 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 10/91 (10%)

Query: 23  IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG-------QLYRPDHSLVDAVTDSW 72
           +I+G++  +L  +P      V L+   PPY   ++G        + + D++  D      
Sbjct: 141 VIRGDATRILSLVPGALTGQVALVVTSPPYGPTVHGLVRPGADGVAKFDNAYNDGTDKGN 200

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLW 103
             +             L  C  +L+P G + 
Sbjct: 201 LAYRDLTGLADGFAQILAGCHTLLRPGGVVV 231


>gi|115289045|gb|ABI85533.1| M.Hin1056ModP-7A [Haemophilus influenzae]
          Length = 342

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 19/136 (13%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       + LI+ DPPYN   +   Y              DKF S
Sbjct: 203 NLIIKGNNLIALHSLAKQFKGKIKLIYIDPPYNTGEDSFKY-------------NDKF-S 248

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
              +  F +  L   + +L  +G ++V   Y+    +  +L  +  +  ++ V   +   
Sbjct: 249 HSTWLTFMKNRLEIAKTLLADDGVIFVHCDYNEDGYLRVLLDEI--FTEDNFVANIAIRS 306

Query: 138 PNFRGRRFQNAHETLI 153
            +  G + Q+  +T++
Sbjct: 307 NSISGNKTQHKEKTIL 322


>gi|329121504|ref|ZP_08250128.1| type III restriction system methylase [Dialister micraerophilus DSM
           19965]
 gi|327469419|gb|EGF14889.1| type III restriction system methylase [Dialister micraerophilus DSM
           19965]
          Length = 677

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 76/227 (33%), Gaps = 34/227 (14%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQ----LNGQLYRPDHSLVD--AVTDSWDK 74
           I+G+++ VL+ L       + +I+ DPPYN             P    +D     D++  
Sbjct: 114 IEGDNLEVLKLLQETYLGKIKMIYIDPPYNTGNNILYKNDFSIPKEEYIDLSNQKDAYGN 173

Query: 75  F---------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFW 124
           F              +       L   R +LK  G + +    + ++ +  ++  +    
Sbjct: 174 FLFQNTESNGRFHTDWLNIMYPRLKLARNLLKDEGYIAIAIDDNEVYNLKKIMDEIFGEK 233

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIW---ASPSP-------KAKGYTFNYDALKAA 174
                +  +SNP    +          L++    +  P        AK  +F        
Sbjct: 234 NYIGTIIIRSNPQGRNKDNIDPVHEYHLVYSRNYTKMPLLKIGKRNAKIDSFENLMRTGK 293

Query: 175 NEDVQMRSDWLIPICSGSER---LRNKDGEKLH--PTQKPEALLSRI 216
           N     R     P+   +E+   + +++ +K++    +  E  +  +
Sbjct: 294 NSRKYERPYRFYPVLVKNEKIEMITDEEYKKIYAENCEFNEEYIEYL 340



 Score = 42.3 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 58/177 (32%), Gaps = 26/177 (14%)

Query: 146 QNAHETLIWASPSPKAKGY-TFNYDALKAANEDVQMRSD---WLIPICSGSERLRNK--- 198
           +N  E +     S   K Y T+ +   K      Q R+    W   I S   +  N    
Sbjct: 357 KNGEEKVWQREFSRVKKEYRTYRFIGNKVKRPPEQTRTPASLWYDDIYSNVSKGTNSLKK 416

Query: 199 --DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIG 250
             + + +    K    +  ++  +++  DIILD F GS T+     +L       R FI 
Sbjct: 417 IFNDKIIFDFSKSLYTVRDLISLNSEDEDIILDFFSGSATTAHATMQLNAEDGGNRKFIL 476

Query: 251 IEM-----------KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
           +++             +        I  +  +    L    GK    R    +L E 
Sbjct: 477 VQLPENLDESLKKANDNAKKTIENAIKFLDSINRPHLLTEIGKERIRRAGKKILEEN 533


>gi|172059095|ref|YP_001806747.1| site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia ambifaria MC40-6]
 gi|171991612|gb|ACB62531.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia ambifaria MC40-6]
          Length = 668

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 21/156 (13%)

Query: 17  FEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLN---------------GQLY 58
            + +  +I+G+++ V++ L    A  V L++ DPPYN   +                   
Sbjct: 95  DDTRHLVIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTGSDFVYPDDFSDSIRHYLAMTG 154

Query: 59  RPDHSLV-DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
           + D  +     T++  +F +   +       L     +L   G + V    H +  +  M
Sbjct: 155 QTDGGVKRSTNTEANGRFHT--DWLNMMYPRLKLAHALLSDEGLIAVHIDEHEVHALVLM 212

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           L+ +        V       P    R     HE+L+
Sbjct: 213 LREIFGEENELGVAVWDKRNPKGDARGVAYQHESLV 248



 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 68/199 (34%), Gaps = 14/199 (7%)

Query: 66  DAVTDSWDKFSSFEAYDAFTRA-----WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           DAV  S +   + +AY A+ +A             L  +G ++ + S           + 
Sbjct: 279 DAVYRSGNAKDAQKAYRAWMKAQTNLSGGEVMYDRLSADGRVYRLVS-MAWPNKKKAPEE 337

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
               +++ +  +        RG R   A    +      +               ++   
Sbjct: 338 YFTPLIHPVTGKP--CAMPARGWRNPPATMQALIERGQIEFGPDETTQPQRIYYLDENMY 395

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
            +   +   +GS+    K         KP    + ++   T+  DI+LD F G+G++G  
Sbjct: 396 ENVPSVLPFAGSDDALLKTLGIPFDQPKPVDFAAAVIGWCTRGDDIVLDCFAGAGSTGHA 455

Query: 241 AKKLR------RSFIGIEM 253
             ++       R +I +++
Sbjct: 456 VMQVNATDGGARRYILVQL 474


>gi|170698060|ref|ZP_02889141.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia ambifaria IOP40-10]
 gi|170137021|gb|EDT05268.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia ambifaria IOP40-10]
          Length = 668

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 21/156 (13%)

Query: 17  FEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLN---------------GQLY 58
            + +  +I+G+++ V++ L    A  V L++ DPPYN   +                   
Sbjct: 95  DDTRHLVIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTGSDFVYPDDFSDSIRHYLAMTG 154

Query: 59  RPDHSLV-DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
           + D  +     T++  +F +   +       L     +L   G + V    H +  +  M
Sbjct: 155 QTDGGVKRSTNTEANGRFHT--DWLNMMYPRLKLAHALLSDEGLIAVHIDEHEVHALVLM 212

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           L+ +        V       P    R     HE+L+
Sbjct: 213 LREIFGEENELGVAVWDKRNPKGDARGVAYQHESLV 248



 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 68/199 (34%), Gaps = 14/199 (7%)

Query: 66  DAVTDSWDKFSSFEAYDAFTRA-----WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           DAV  S +   + +AY A+ +A             L  +G ++ + S           + 
Sbjct: 279 DAVYRSGNAKDAQKAYRAWMKAQTNLSGGEVMYDRLSADGRVYRLVS-MAWPNKKKAPEE 337

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
               +++ +  +        RG R   A    +      +               ++   
Sbjct: 338 YFTPLIHPVTGKP--CAMPARGWRNPPATMQALIERGQIEFGPDETTQPQRIYYLDENMY 395

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
            +   +   +GS+    K         KP    + ++   T+  DI+LD F GSG++G  
Sbjct: 396 ENVPSVLPFAGSDDALLKTLGIPFDQPKPVDFAAAVIGWCTRGDDIVLDCFAGSGSTGHA 455

Query: 241 AKKLR------RSFIGIEM 253
             ++       R +I +++
Sbjct: 456 VMQVNATDGGARRYILVQL 474


>gi|115350076|ref|YP_771915.1| adenine-specific DNA-methyltransferase [Burkholderia ambifaria
           AMMD]
 gi|115280064|gb|ABI85581.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia ambifaria AMMD]
          Length = 672

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 21/156 (13%)

Query: 17  FEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLN---------------GQLY 58
            + +  +I+G+++ V++ L    A  V L++ DPPYN   +                   
Sbjct: 99  DDTRHLVIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTGSDFVYPDDFSDSIRHYLAMTG 158

Query: 59  RPDHSLV-DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
           + D  +     T++  +F +   +       L     +L   G + V    H +  +  M
Sbjct: 159 QTDGGVKRSTNTEANGRFHT--DWLNMMYPRLKLAHALLSDEGLIAVHIDEHEVHALVLM 216

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           L+ +        V       P    R     HE+L+
Sbjct: 217 LREIFGEENELGVAVWDKRNPKGDARGVAYQHESLV 252



 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 68/199 (34%), Gaps = 14/199 (7%)

Query: 66  DAVTDSWDKFSSFEAYDAFTRA-----WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           DAV  S +   + +AY A+ +A             L  +G ++ + S           + 
Sbjct: 283 DAVYRSGNAKDAQKAYRAWMKAQTNLSGGEVMYDRLSADGRVYRLVS-MAWPNKKKAPEE 341

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
               +++ +  +        RG R   A    +      +               ++   
Sbjct: 342 YFTPLIHPVTGKP--CAMPARGWRNPPATMQALIERGQIEFGPDETTQPQRIYYLDENMY 399

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
            +   +   +GS+    K         KP    + ++   T+  DI+LD F GSG++G  
Sbjct: 400 ENVPSVLPFAGSDDALLKTLGIPFDQPKPVDFAAAVIGWCTRGDDIVLDCFAGSGSTGHA 459

Query: 241 AKKLR------RSFIGIEM 253
             ++       R +I +++
Sbjct: 460 VMQVNATDGGARRYILVQL 478


>gi|310641273|ref|YP_003946031.1| parb-like nuclease domain protein and DNA modification methylase
           domain protein [Paenibacillus polymyxa SC2]
 gi|309246223|gb|ADO55790.1| ParB-like nuclease domain protein and DNA modification methylase
           domain protein [Paenibacillus polymyxa SC2]
          Length = 84

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 31/64 (48%)

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
            +       + HPT KP  L+S  + +S+K GDI+ D F GSG+     ++  R    + 
Sbjct: 20  WQFDRPFRNEYHPTLKPIPLISYPIKNSSKLGDIVFDLFGGSGSMLIACEETNRICYTVS 79

Query: 253 MKQD 256
           +  +
Sbjct: 80  LIPN 83


>gi|255325645|ref|ZP_05366742.1| DNA-methyltransferase [Corynebacterium tuberculostearicum SK141]
 gi|255297255|gb|EET76575.1| DNA-methyltransferase [Corynebacterium tuberculostearicum SK141]
          Length = 419

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 57/167 (34%), Gaps = 11/167 (6%)

Query: 18  EWKDKIIKGNSISVLEKLPA--KSVDLIFADPPYNLQLN---GQLYRPDHSLVDAVTDSW 72
           +  ++I   +++ VL++L A  +  D+I+ DPPYN   +      YR    L       W
Sbjct: 52  DSLNRIFAADNLPVLQELAARREVFDVIYIDPPYNTGKDFVYRDNYRLRRQLRSGSYAEW 111

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVW 131
                   + +     L+  R VL   G ++V      +     +L  +         + 
Sbjct: 112 -----HSEWLSMMLPRLILAREVLSSEGFIFVSIGEDEVANTRKVLDEVFGEGCFAGQLI 166

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
            K         +     HE ++  + +    G+  +     +   + 
Sbjct: 167 WKKAGTGKNDAKYAVVEHEYILCYARTSDNPGFNIDIQGHTSTKYNH 213



 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 43/126 (34%), Gaps = 4/126 (3%)

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
           +   +  +  V +K      +   + +  ++ L++         YT NY  + A    + 
Sbjct: 244 DGKEYWPDQPVGKKKVARWRWSLDKVEQFYDELVFRRGFV----YTKNYQKVGARPRSIL 299

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
               + +      +       E +    KP  L+  +L         +LD F GSGT+  
Sbjct: 300 DGERFGVTRTGRRDAEEAMGIEGIFDFPKPVRLIKHLLSIGGGKDARVLDFFAGSGTTAQ 359

Query: 240 VAKKLR 245
              +L 
Sbjct: 360 AVIELN 365


>gi|126661692|ref|ZP_01732691.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Flavobacteria bacterium BAL38]
 gi|126625071|gb|EAZ95760.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Flavobacteria bacterium BAL38]
          Length = 624

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 69/205 (33%), Gaps = 23/205 (11%)

Query: 24  IKGNSISVLEKLP---AKSVDLIFADPPYNLQLN-------GQLYRPDHSLVDAVTDSWD 73
           I+G+++ VL+ +    A  V +I+ DPPYN   +           +    +   V D  +
Sbjct: 99  IEGDNLEVLKLMQKSYANKVKMIYIDPPYNTGKDFVYKDNYKDNLKNYQQVTGQVDDEGN 158

Query: 74  KFSSFEA--------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW- 124
           K S+           +       L   R +LK +G ++V    + +  +  +   +    
Sbjct: 159 KLSTNSDSDGRYHSNWLNMMYPRLRLARNLLKEDGVIFVSIDDNEVDNLRKICDEIFGES 218

Query: 125 -ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK---GYTFNYDALKAANEDVQM 180
             +  I+W  +  + N       + +  +     +   K    +         +N D  +
Sbjct: 219 NFMGCIMWNSTKSVTNTALISVSHNYNLVFAKDINYFVKNREHFRLPESGDGFSNPDNDV 278

Query: 181 RSDWLIPICSGSERLRNKDGEKLHP 205
           R  W            N+  E  +P
Sbjct: 279 RGPWKADPFQVGGWRPNQQYEITNP 303



 Score = 36.9 bits (84), Expect = 5.9,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 181 RSDWLIPICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTK-PGDIILDPFFGSGTSG 238
             D +    +G+  ++N  +   +    KP  L+ +++         IILD F GS T+ 
Sbjct: 362 WWDDVGATTNGTTLVKNLFNNSSVFTNPKPVDLIEKMIQLGDHTKNAIILDFFGGSSTTA 421

Query: 239 AV 240
             
Sbjct: 422 HA 423


>gi|309379437|emb|CBX22004.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 537

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 10/163 (6%)

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY---TFNYDALKAANEDVQMRSD 183
            +++   +N       +      +  ++   + + K      F  +           + D
Sbjct: 222 GEVIKHPTNAWKFEHSKYLSYQEDNRLYWGKNGENKYPRLKKFLTEMDGGMVPVDLWKHD 281

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGSGTSGAVAK 242
                 + S+ L +  G+ +    KP +L+ R+L  ++   D IILD F GSGT+     
Sbjct: 282 ETGTTDAASKELESMIGKGIFTFPKPPSLIKRMLKIASNKKDSIILDFFSGSGTTAHAVM 341

Query: 243 KLR------RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
           +L       R FI +++ ++  + +  R A    +  I    +
Sbjct: 342 QLNAEDGGSRRFICVQLPEETDEKSEARKAGFDTIAEIAKERI 384



 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 67/218 (30%), Gaps = 35/218 (16%)

Query: 24  IKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLY-------RPDHSLVDAVTDS-- 71
           I+  ++  L+ L    A SV +I+ DPPYN   +  +Y       R +++     TD   
Sbjct: 3   IEAENLEALKILQKSYAGSVKMIYIDPPYNTGNDSFIYPDKFSESREEYARRVGDTDDAG 62

Query: 72  -----------W-----DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
                      W     D       + +     L   + +L+ +G +++    +   ++ 
Sbjct: 63  YLKRDGVFQGAWRKNGKDSGHYHSNWLSMMLPRLHLAKTLLREDGVIFISIDDNEQAQLK 122

Query: 116 TMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK---AKGYTFNYDAL 171
            +   +         +  +     +   R F    E ++    S      K         
Sbjct: 123 LLCDEVFGAENFVSNIIWEKRYTRSNNARMFTTLTEQIVCYRKSDNLQELKEPRNEKADS 182

Query: 172 KAANEDVQMRSDWLIPICSG---SERLRNKDGEKLHPT 206
              N D   R  W    C      E+  N   E  +P 
Sbjct: 183 TYTNPDNDPRGVWTSVSCVNPATKEQRPNLSYEIQNPH 220


>gi|328952980|ref|YP_004370314.1| hypothetical protein Desac_1276 [Desulfobacca acetoxidans DSM
           11109]
 gi|328453304|gb|AEB09133.1| hypothetical protein Desac_1276 [Desulfobacca acetoxidans DSM
           11109]
          Length = 167

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 7/112 (6%)

Query: 19  WKDKIIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           WK+K+  G+++ +L  ++   SVDLI+ DPP+N Q    +   + S   A      + ++
Sbjct: 5   WKNKLFFGDNLDILRNQIDTASVDLIYLDPPFNSQATYNILFAEKSGELAAA----QITA 60

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
           FE    +      A R V+        +      FR    +  +   + +  
Sbjct: 61  FEDTWHWNLEAEKAYREVVTFGSK--KVADLVQAFRTHLAISLIKHRLTDVF 110


>gi|328947546|ref|YP_004364883.1| DNA methylase N-4/N-6 domain protein [Treponema succinifaciens DSM
           2489]
 gi|328447870|gb|AEB13586.1| DNA methylase N-4/N-6 domain protein [Treponema succinifaciens DSM
           2489]
          Length = 520

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 62/175 (35%), Gaps = 40/175 (22%)

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
            D++     G++ + N  GEK     K   L++ ++  S+    IILD F GSGT+G   
Sbjct: 341 PDYVGMSQDGTKEISNILGEKSFGYPKSVKLINFLIKISSNQNSIILDFFAGSGTTGHAV 400

Query: 242 KKL------RRSFIGIEMKQD--------YIDIATKRIASV------------------Q 269
             L       R FI  ++ +           D+ +KR+  +                  +
Sbjct: 401 LDLNKSDGGNRIFILCQLNEKTDANPDGIAYDVTSKRLKRIMTGECYDGSKDFPWLQDNE 460

Query: 270 PLGNIEL-----TVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           P G          +   + TE +  F+++ E      G+            VC +
Sbjct: 461 PYGGNLDVYEIEEIFNSESTEGKTPFDVIDETLY---GKEKFQTVKEKIEWVCQN 512



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 51/146 (34%), Gaps = 14/146 (9%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           +K+I G++   L+ L       +D+I+ DPPY             S+ +    +++   +
Sbjct: 90  NKLIIGDNYQALQNLLIQYRGKIDVIYIDPPYG----------KDSMGEFAKTNYNNAIT 139

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNP 136
            +   +     L+  R++L   G ++      N   +  +   +        I   +   
Sbjct: 140 RDNLLSMLYPRLVLARQLLSDEGVIFCSIDDKNQAYVKCLFDEIFGETNFAGIFPWRKRT 199

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAK 162
             +         +E ++  + S   K
Sbjct: 200 AKSDVPFGISQDYEYILVFAKSEFFK 225


>gi|21226295|ref|NP_632217.1| type III restriction-modification system methylation subunit
           [Methanosarcina mazei Go1]
 gi|20904540|gb|AAM29889.1| type III restriction-modification system methylation subunit
           [Methanosarcina mazei Go1]
          Length = 1051

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 61/177 (34%), Gaps = 15/177 (8%)

Query: 104 VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
            IG     + I   ++  N  +   ++ +    M        +       + +   K   
Sbjct: 679 CIGGSEKEYIISEKMEFENGKLKKPVIIKAGWAMKKQILNWLEGKET---YDTKGQKVTK 735

Query: 164 YTFNYDALKAANEDVQMRSDW-----LIPICSGSERLRNKDGEKLHPTQKPEALLSRILV 218
           + FN + +    ++    +       L     G+  L+N   E +    KP  LL  ++ 
Sbjct: 736 FYFNKNGILCYEKEKSKINPKTVISKLTNTKEGTSTLKNVINEDIDLYPKPPKLLEFLIN 795

Query: 219 SST-KPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYIDIATKRIASV 268
             +     IILD F GSGT+      L       R +I IEM   +  +   RI  +
Sbjct: 796 LGSQDEASIILDFFAGSGTTAHAILNLNKEECGNRKYILIEMGDYFDSVLKPRIKKI 852



 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 40/124 (32%), Gaps = 19/124 (15%)

Query: 38  KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK 97
           + +  I+ DPPYN   +   Y+             D++     + +     + + + +L 
Sbjct: 524 EQIKCIYIDPPYNTGKDKFPYK-------------DRYMH-SCWLSLLSQTIQSSKGILT 569

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
            +G  +     +    +  +          L D++W             F  +HE +   
Sbjct: 570 LDGIFFCSIDSNEAHNLKQVFNEYFGSDNYLADLIWDLGTGT---TAGHFTRSHEYIYSY 626

Query: 156 SPSP 159
           + + 
Sbjct: 627 AKNK 630


>gi|33599901|ref|NP_887461.1| type III restriction-modification system methyltransferase
           [Bordetella bronchiseptica RB50]
 gi|33567498|emb|CAE31411.1| type III restriction-modification system methyltransferase
           [Bordetella bronchiseptica RB50]
          Length = 613

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 67/208 (32%), Gaps = 25/208 (12%)

Query: 20  KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQL----------NGQLYRPDHSLVD 66
           K+  I+G+++  L+ L       V +I+ DPPYN             + + +    + VD
Sbjct: 93  KNLFIEGDNLDALKLLQETYLGKVKMIYIDPPYNTGNDFIYEDDFAEDARTFLVRSNQVD 152

Query: 67  -------AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
                  A TD+  +F S   + +     +   R +L  +G ++V      I  +  +  
Sbjct: 153 DSGVRLVANTDTNGRFHS--DWLSMLYPRIKLARTLLSEDGVIFVSADDSEIANLIRICD 210

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
            +         +           +   + H+ ++  + +      T     + A      
Sbjct: 211 EIFGEANFVANFIWEKRTNRENRKVVSSRHDYVVCYARNQMPGTRTLKQLPMSAKALANY 270

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQ 207
              D       G  +      +  H T+
Sbjct: 271 KNPD---NDPRGLWKSDPAHAQAGHGTK 295



 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 7/61 (11%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIE 252
            G  +  T KP  L+  ++  S     IILD F GSGT+     +L       R FI ++
Sbjct: 382 SGRAVFDTPKPVGLIQTLIQLSCDE-GIILDFFAGSGTTAEAIFELNTMDGRERRFILVQ 440

Query: 253 M 253
           +
Sbjct: 441 L 441


>gi|296840789|ref|ZP_06899359.1| type III restriction-modification system StyLTI enzyme mod
           [Neisseria polysaccharea ATCC 43768]
 gi|296839951|gb|EFH23889.1| type III restriction-modification system StyLTI enzyme mod
           [Neisseria polysaccharea ATCC 43768]
          Length = 447

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 62/163 (38%), Gaps = 10/163 (6%)

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY---TFNYDALKAANEDVQMRSD 183
            +++   +N       +      +  ++   + + K      F  +           + D
Sbjct: 132 GEVITHPTNAWKFEHSKYLSYQEDNRLYWGKNGENKYPRLKKFLTEMDGGMVPVDLWKHD 191

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGSGTSGAVAK 242
                 + S+ L +  G+ +    KP +L+ R+L  ++   D IILD F GSGT+     
Sbjct: 192 ETGTTDAASKELESMIGKGIFTFPKPPSLIKRMLKIASNKKDSIILDFFTGSGTTAHAVM 251

Query: 243 KL------RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
           +L       R +I +++ ++  + +  R A    +  I    +
Sbjct: 252 QLNAEDGGNRRYICVQLPEETDEKSEARKAGFDTIAEIAKERI 294


>gi|241759017|ref|ZP_04757129.1| type III restriction-modification system EcoP15I enzyme mod
           [Neisseria flavescens SK114]
 gi|241320838|gb|EER57071.1| type III restriction-modification system EcoP15I enzyme mod
           [Neisseria flavescens SK114]
          Length = 644

 Score = 60.4 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 10/163 (6%)

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY---TFNYDALKAANEDVQMRSD 183
            +++   +N       +      +  ++   + + K      F  +           + D
Sbjct: 329 GEVITHPTNAWKFEHSKYLSYQEDNRLYWGKNGENKYPRLKKFLTEMDGGMVPVDLWKHD 388

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGSGTSGAVAK 242
                 + S+ L +  G+ +    KP +L+ R+L  ++   D IILD F GSGT+     
Sbjct: 389 ETGTTDAASKELESMIGKGIFTFPKPPSLIKRMLKIASNKKDSIILDFFTGSGTTAHAVM 448

Query: 243 KLR------RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
           +L       R FI +++ ++  + +  R A    +  I    +
Sbjct: 449 QLNAEDGGSRRFICVQLPEETDEKSEARKAGFDTIAEIAKERI 491



 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 69/222 (31%), Gaps = 35/222 (15%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLY-------RPDHSLVDAVT 69
           ++  I+  ++  L+ L    A SV +I+ DPPYN   +  +Y       R +++     T
Sbjct: 106 QNVFIEAENLEALKILQKSYAGSVKMIYIDPPYNTGNDSFIYPDKFSESRKEYARRVGDT 165

Query: 70  DS-------------W-----DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
           D              W     D       + +     L   + +L+ +G +++    +  
Sbjct: 166 DDAGYLKRDGVFQGAWRKNGKDSGHYHSNWLSMMLPRLHLAKTLLREDGVIFISIDDNEQ 225

Query: 112 FRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK---AKGYTFN 167
            ++  +   +         +  +     +   R F    E ++    S      K     
Sbjct: 226 AQLKLLCDEVFGAENFVSNIIWEKRYTRSNNARMFTTLTEQIVCYRKSDNLQELKEPRNE 285

Query: 168 YDALKAANEDVQMRSDWLIPICSG---SERLRNKDGEKLHPT 206
                  N D   R  W    C      E+  N   E  +P 
Sbjct: 286 KADSTYTNPDNDPRGVWTSVSCVNPATKEQRPNLSYEIQNPH 327


>gi|256393229|ref|YP_003114793.1| RNA methylase [Catenulispora acidiphila DSM 44928]
 gi|256359455|gb|ACU72952.1| putative RNA methylase [Catenulispora acidiphila DSM 44928]
          Length = 329

 Score = 60.4 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 35/71 (49%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           HP +    + +  + + T+P D+++DP  G GT+   A  L R  +G+E +  +   A  
Sbjct: 48  HPAKMLPDIAAYAISTYTQPDDLVVDPMCGIGTTLVEALHLGRRALGVEYEARWAKYAEA 107

Query: 264 RIASVQPLGNI 274
            IA  +  G +
Sbjct: 108 NIALARAQGAV 118


>gi|78064690|ref|YP_367459.1| site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia sp. 383]
 gi|77965435|gb|ABB06815.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia sp. 383]
          Length = 672

 Score = 60.4 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 25/158 (15%)

Query: 17  FEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQ------------------LNG 55
            + +  +I+G+++ V++ L    A  V L++ DPPYN                    + G
Sbjct: 99  DDTRHLVIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTGSDFVYPDDFSDSIRHYLAMTG 158

Query: 56  QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
           Q            T++  +F +   +       L     +L   G + V    H +  + 
Sbjct: 159 QT--QGGVKRSTNTEANGRFHT--DWLNMMYPRLKLAHALLSDEGLIAVHIDEHEVHALV 214

Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
            ML+ +        V       P    R     HE+L+
Sbjct: 215 LMLREIFGEENELGVAVWDKRNPKGDARGVAYQHESLV 252



 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 70/205 (34%), Gaps = 15/205 (7%)

Query: 66  DAVTDSWDKFSSFEAYDAFTRA-----WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           DAV  S +   + +AY A+ +A             L   G ++ + S           + 
Sbjct: 283 DAVYRSGNPKDAQKAYRAWMKAQTNLSGGEVMYDRLSEEGRVYRLVS-MAWPNKKKAPEE 341

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
               +++ +  +        RG R   A    +      +               ++   
Sbjct: 342 YFTPLIHPVTGKP--CAMPARGWRNPPATMQALIERGQIEFGADESTQPQRIYYLDENMY 399

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
            +   +   +GS+    K         KP    + ++   T+  DI+LD F GSG++G  
Sbjct: 400 ENVPSVLPFAGSDDALLKTLGIPFDLPKPVDFAAAVIGWCTRGDDIVLDCFAGSGSTGHA 459

Query: 241 AKKLR------RSFIGIEMKQDYID 259
             ++       R ++ +++  + +D
Sbjct: 460 VMQVNATDGGARRYVLVQL-PEALD 483


>gi|332186964|ref|ZP_08388705.1| DNA methylase family protein [Sphingomonas sp. S17]
 gi|332012974|gb|EGI55038.1| DNA methylase family protein [Sphingomonas sp. S17]
          Length = 863

 Score = 60.4 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           + + G + H       ++ R +   + PG+++ DPF G  T    A +L R  +G E+  
Sbjct: 770 QTRRGLENHICPLQFDIVDRAIRLGSNPGELVYDPFGGLMTVPVRAMRLGRRGLGCELNP 829

Query: 256 DY 257
            Y
Sbjct: 830 QY 831



 Score = 41.9 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 25/89 (28%), Gaps = 10/89 (11%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           +  + ++    +   SVDLI    P+           D    D     + +      Y  
Sbjct: 502 VNNDCVAETRAMADNSVDLIVTSIPFGNHYEYSARYEDFGHTDDNQHFFGQM----DYLT 557

Query: 84  FTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
                     RVL+P    ++       F
Sbjct: 558 ------PELLRVLRPGRLAFIHVKDRIRF 580


>gi|229828985|ref|ZP_04455054.1| hypothetical protein GCWU000342_01070 [Shuttleworthia satelles DSM
           14600]
 gi|229792148|gb|EEP28262.1| hypothetical protein GCWU000342_01070 [Shuttleworthia satelles DSM
           14600]
          Length = 621

 Score = 60.4 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 63/157 (40%), Gaps = 25/157 (15%)

Query: 24  IKGNSISVLEKLPAK---SVDLIFADPPYNLQL-----------------NGQLYRPDHS 63
           I+G+++ VL+ L       V +I+ DPPYN                    +  +Y  D +
Sbjct: 101 IEGDNLEVLKLLQESYLSKVKMIYIDPPYNTGNDFIYRDDFKQSVADYDEDSGVYDEDGN 160

Query: 64  LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-- 121
            +   TD+  +F S   + +   + L+  R +L  +G +++    +    +      +  
Sbjct: 161 RMFKNTDTNGRFHS--DWCSMIYSRLMLARNLLTDDGVIFISIDDNEQENLKKCCSEVFG 218

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
               +  +VW ++   P    +   N+H+ ++  + +
Sbjct: 219 GQNFVAQLVWERAYA-PKNDAKFISNSHDYVLMYAKN 254



 Score = 42.3 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 21/108 (19%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGSGTSGAVAKKLR---- 245
           G++ + N     +    KP  LL R+L  +   GD ++LD F GSGT+     +      
Sbjct: 375 GAKEVTNIMDAGVFDGPKPVRLLIRLLTLANLKGDSVVLDFFSGSGTTAHALMQYNAENS 434

Query: 246 --RSFIGIEMKQD-------Y-------IDIATKRIASVQPLGNIELT 277
               F+ +++ ++       Y        +I  +RI         E  
Sbjct: 435 KHCKFVAVQLPEETDINGTAYKAGYSNICEIGKERIRRAARKIAEEHP 482


>gi|317013706|gb|ADU81142.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
           pylori Gambia94/24]
          Length = 390

 Score = 60.4 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 54/140 (38%), Gaps = 17/140 (12%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
             K+    ++  L+++  +S+  I+ DPPYN + +   Y   H+                
Sbjct: 1   MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYEDAHA---------------- 44

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y+ +    L+  + VLK +G +++    + +  +  +   + F + N +    +     
Sbjct: 45  DYEKWIEEHLILAKSVLKQSGCIFISIDDNKMAEVKIIANEI-FGMRNFLGTFITKQATR 103

Query: 140 FRGRRFQNAHETLIWASPSP 159
              +     HE ++  + + 
Sbjct: 104 SNAKHINITHEYVLSYAKNK 123



 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 2/96 (2%)

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           L + +         +    LK + ++     D+      G++ L     + L  T KP  
Sbjct: 235 LYYQNRLIFKNNRPYEKYYLKESQDNCLSVLDFY--SRQGTKDLEKLGLKGLFKTPKPVG 292

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           L+  +L+ ST    IILD F GSGT+     ++ R 
Sbjct: 293 LIKYLLLCSTPKDSIILDFFAGSGTTAQAVMEVNRD 328


>gi|109947917|ref|YP_665145.1| adenine specific DNA methylase [Helicobacter acinonychis str.
           Sheeba]
 gi|109715138|emb|CAK00146.1| adenine specific DNA methylase [Helicobacter acinonychis str.
           Sheeba]
          Length = 614

 Score = 60.4 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 64/194 (32%), Gaps = 29/194 (14%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLY----RPDHSLV------- 65
           K+ II G+++  L+ L    ++ + +++ DPPYN      +Y    R D+  +       
Sbjct: 91  KNAIIIGDNLDALKLLKPAYSEKIKMVYIDPPYNTTNENFIYPDNFRQDYKKILEEVGLI 150

Query: 66  ------DAVTDSWDKF-------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
                 + V     KF        +   + +F    L   R +LK +G +++    +   
Sbjct: 151 EIDENGEEVESESLKFFKNIQGSRTHSGWLSFMLPRLKLARDLLKEDGVIFISIDDNEQA 210

Query: 113 RIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLI-WASPSPKAKGYTFNYDA 170
            +  +   +           RK+    N         HE L+ +A             + 
Sbjct: 211 NLKLLCDEIFGEGNFVADFIRKTKSTTNDAKIGVNYQHEFLLCYAKNKEFVNLLGGEKNL 270

Query: 171 LKAANEDVQMRSDW 184
               N D      W
Sbjct: 271 ENYKNPDNDPNGVW 284



 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 15/101 (14%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQ 255
           +     K    +++I+  +T+ GDIILD F GSGT+     +L       R FI +++ +
Sbjct: 391 EYFSYPKGVDFMAKIIEHATEKGDIILDFFAGSGTTAHAVMELNAEDKGNREFILVQIDE 450

Query: 256 D--------YIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
           +          D     + S +P+ + ++T+   KR   ++
Sbjct: 451 EIKEDKNKSAYDFCQNDLKSAKPVIS-DITIERVKRAAQKI 490


>gi|21673736|ref|NP_661801.1| type III restriction system methylase [Chlorobium tepidum TLS]
 gi|21646860|gb|AAM72143.1| type III restriction system methylase [Chlorobium tepidum TLS]
          Length = 669

 Score = 60.4 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 59/153 (38%), Gaps = 21/153 (13%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLN-------GQLYRP--------- 60
           ++ +I+G+++ VL+ L    A  + LI+ DPPYN   +           R          
Sbjct: 98  QNLMIEGDNLEVLKLLQKSYAGKIKLIYIDPPYNTGKDFVYPDDFKDNIRNYLELTGQVE 157

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
               + + T++  +F +   +       L   R++L P G + V    H +  +  +L++
Sbjct: 158 GGRKISSNTEASGRFHT--DWLNMMYPRLKIARQLLSPTGVIAVHIDEHELEALVIVLRD 215

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           L        V       P    R     HE+L+
Sbjct: 216 LFGEENELGVTIWDKRNPKGDSRGIAYQHESLV 248



 Score = 43.4 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGA------VAKKLRRSFIGIEM 253
            KP     +++   +   +I++D F GSGT+G        A    R +I +++
Sbjct: 422 PKPVDFSVQVISWCSSKDEIVMDFFAGSGTTGHAVMAQNAADGGNRRYILVQL 474


>gi|317177075|dbj|BAJ54864.1| Type II DNA modification enzyme [Helicobacter pylori F16]
          Length = 390

 Score = 60.4 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 53/140 (37%), Gaps = 17/140 (12%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
             K+    ++  L+++  +S+  I+ DPPYN + +   Y   H+                
Sbjct: 1   MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYEDAHA---------------- 44

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YD + +  L+  + VLK +G +++    + +  +  +   +     N +    +     
Sbjct: 45  DYDKWIKEHLILAKAVLKQSGCIFISIDDNKMAEVKIIANEIFGT-CNFLGTFITKQATR 103

Query: 140 FRGRRFQNAHETLIWASPSP 159
              +     HE ++  + + 
Sbjct: 104 SNAKHINITHEYVLSYAKNK 123



 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 11/107 (10%)

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           L + +         +    LK + ++     D+      G++ L     + L  T KP  
Sbjct: 235 LYYQNRLIFKNNRPYEKYYLKESQDNCLSVLDFY--SRQGTKDLEKLGLKGLFKTPKPVE 292

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           L+  +L+ ST    IILD F GSGT+             IE+ +DY 
Sbjct: 293 LIKYLLLCSTPKDSIILDFFAGSGTTAQAV---------IEVNKDYY 330


>gi|289192376|ref|YP_003458317.1| DNA methylase N-4/N-6 domain protein [Methanocaldococcus sp.
           FS406-22]
 gi|288938826|gb|ADC69581.1| DNA methylase N-4/N-6 domain protein [Methanocaldococcus sp.
           FS406-22]
          Length = 823

 Score = 60.4 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 2/98 (2%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP--TQKPEALLSRIL 217
               Y  ++      + D +       P  S     +N      H   T+ P   + + +
Sbjct: 38  YPNPYIEDFIKEFGKSYDAENDDYQKTPYVSDVSEGKNDPIYNAHTYHTKVPYKAIMKFI 97

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
              T+PGDI+ D F GSG +G  A    R  I  ++  
Sbjct: 98  KHYTEPGDIVFDGFCGSGMTGVAALMTGRHAILNDLSP 135



 Score = 43.4 bits (101), Expect = 0.056,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 41/128 (32%), Gaps = 18/128 (14%)

Query: 14  NSIFEWKDKII--KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR----------PD 61
           NS  +  +KI     +S   L  +P  S+D IF DPP+   L                 +
Sbjct: 408 NSYPKINNKIYITTQSSTD-LRNIPDNSIDYIFVDPPFGDNLMYSELNFIWESWLRVFTN 466

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL---WVIGSYHNIFRIGTML 118
           +     + ++ +K      Y            R+LKPN  +   +          I   L
Sbjct: 467 NKPEAIINETQNK--DVYEYKELMYQCFKEMYRILKPNRWITIEFHNSKAKVWNAIQEAL 524

Query: 119 QNLNFWIL 126
               F I 
Sbjct: 525 SKAGFIIA 532


>gi|254779414|ref|YP_003057519.1| putative type III restriction enzyme M protein (type III adenine
           specific DNA methyltransferase (Mod)) [Helicobacter
           pylori B38]
 gi|254001325|emb|CAX29310.1| Putative type III restriction enzyme M protein (type III adenine
           specific DNA methyltransferase (Mod)) [Helicobacter
           pylori B38]
          Length = 644

 Score = 60.4 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 59/172 (34%), Gaps = 30/172 (17%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-------- 69
           + II G+++  L+ L +   + + +I+ DPPYN Q    +Y PD+   D           
Sbjct: 102 NAIIIGDNLDALKLLKSAYSEKIKMIYIDPPYNTQNENFIY-PDNFRQDYQKILREVGLM 160

Query: 70  --DSWDKFSSFEA---------------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
             D   +    E+               + +F    L   R +LK +G +++    +   
Sbjct: 161 EIDENGEEIESESLKFFKNTQGSGTHSGWLSFMLPRLKLARDLLKEDGVIFISIDDNECA 220

Query: 113 RIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
            +  +   +                  +F G+   +  E ++    S    G
Sbjct: 221 NLKILCDEIFGEDNFVACAVWHKKDNASFLGKDIIDLLEYVLIYKKSASFNG 272



 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 15/104 (14%)

Query: 199 DGEKLHPTQKPEALLSRILVS--STKPGDIILDPFFGSGTSGAVAKKL------RRSFIG 250
           D   L    KP  L+ + + +   T   DIILD F GSGT+     +L       R FI 
Sbjct: 418 DNLPLFEYPKPSKLIKKFIRNVTDTNSNDIILDFFAGSGTTAHAVMELNAEDKGNREFIL 477

Query: 251 IEMKQD------YIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
           +++ ++        D     + S +P+ + ++T+   KR   ++
Sbjct: 478 VQIDEEIKEDKSAYDFCKNVLKSAKPVIS-DITIERVKRAAQKI 520


>gi|188591462|ref|YP_001796061.1| putative DNA methyltransferase, Modification methylase [Cupriavidus
           taiwanensis]
 gi|170938857|emb|CAP63858.1| putative DNA methyltransferase, Modification methylase [Cupriavidus
           taiwanensis LMG 19424]
          Length = 414

 Score = 60.4 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 84/282 (29%), Gaps = 71/282 (25%)

Query: 37  AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
            + + L    PPY L+       P  +                 Y  F    L      L
Sbjct: 128 GEPIALCVTSPPYPLRQARAYGNPTEA----------------QYVDFLCKALEPIVAGL 171

Query: 97  KPNGTLWVIGS-----------YHNIFRIGTMLQN-LNFWILNDIVW----RKSNPMPNF 140
            P G++ +  S              I R+   L + L   ++  + W    +   P    
Sbjct: 172 VPGGSIVLNVSNDIFEPRSPARSLYIERLTLALHDRLGLSLMGRVPWVNYSKPPGPTRWA 231

Query: 141 RGRRFQ--NAHETLIWASPSPKA--------------------------KGYTFNYDALK 172
              R Q  +A+E ++W +  P                            +   +   A +
Sbjct: 232 CVDRVQLASAYEPVLWFTNDPSCVRADNRQLLEAHTARHRQLMAAGGETRNAVYGDGAYR 291

Query: 173 AANEDVQMRSDWLIPICSGSERLRNKD-----------GEKLHPTQKPEALLSRILVSST 221
                   ++   +P           D           G   H   +P  +        +
Sbjct: 292 IRASAFGNQTAGRLPRNVIERGHNCADTRAYRRAAQSLGLPTHGAMQPTDIPDFFTRFLS 351

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +PGD+++DPF G+  +G  A++L R +I  E    Y+  A +
Sbjct: 352 RPGDLVVDPFGGTIRTGLAAERLGRRWIATEWILQYVRGAAE 393


>gi|188591328|ref|YP_001795927.1| restriction modification Type III methylase [Cupriavidus
           taiwanensis]
 gi|170938723|emb|CAP63709.1| restriction modification Type III methylase [Cupriavidus
           taiwanensis LMG 19424]
          Length = 685

 Score = 60.4 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 55/167 (32%), Gaps = 23/167 (13%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN-----------------GQLYRP 60
           +  I+G+++ VL+ L       V +I+ DPPYN                      +L   
Sbjct: 109 NLFIEGDNLEVLKLLQKSYYGKVKMIYIDPPYNTGNEFIYPDNYSESLETYLAYAKLTDE 168

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           +       T S  +F +   +       L   R +L  +GT++V    H I  +  ++  
Sbjct: 169 EGKRFATNTASEGRFHT--KWLNMMYPRLYLARNLLTEDGTIFVSIDEHEIENLNRLMDE 226

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
           +     N I         +    R    HE ++  +         + 
Sbjct: 227 IYGE-SNRIATIVWKGATDNNPTRVAVEHEYIVCFAKDISRCPAVWK 272



 Score = 43.4 bits (101), Expect = 0.051,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 10/151 (6%)

Query: 122 NFWILNDIVWRKSNPMPNFRGRRF--QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
            +    +      N +    G RF  +   E +                      + + +
Sbjct: 342 GYVYRVEHPETGENCVLPANGYRFPEERMKELIQQKKIIFGDDHTQIVQIKEYLKDFEEK 401

Query: 180 MRSDWLIPICSGSERLRNKDGE-KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
           + S   +   +G+  +    G  K+    KP  LL+ I       GDI+LD F GS  S 
Sbjct: 402 LSSVIHLDSRAGANEIGRLLGNRKVFTNPKPYELLAYIFDFQLDNGDILLDFFAGSCASA 461

Query: 239 AVAKKLR------RSFIGIEMKQDYIDIATK 263
                L       R FI +++  + +D + K
Sbjct: 462 QAVMDLNARDGAKRKFIMVQL-PERLDASVK 491


>gi|258620562|ref|ZP_05715599.1| DNA methylase N-4/N-6 domain protein [Vibrio mimicus VM573]
 gi|258587077|gb|EEW11789.1| DNA methylase N-4/N-6 domain protein [Vibrio mimicus VM573]
          Length = 713

 Score = 60.4 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 62/191 (32%), Gaps = 13/191 (6%)

Query: 21  DKIIKGNSISVLEKL---PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
             +I G +   L+ L       +D I+ DPPYN          D    +   +S D +  
Sbjct: 140 HSVINGENYHALKALTFTHRGKIDAIYIDPPYNTGAR------DWKYNNDYVESEDLYRH 193

Query: 78  FEAYDAFTRAWLLACRRVLKPNGT-LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            + + AF    L   + +L PN + L          R+G +L+         ++    N 
Sbjct: 194 SK-WLAFMERRLKLAKELLNPNNSVLIATIDEKEYLRLGLLLEQTFPEANVQMISTVINS 252

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD--ALKAANEDVQMRSDWLIPICSGSER 194
               R   F    E +           +T +       A N        W   + SG++ 
Sbjct: 253 QGTPRKGAFSRVDEYIYIVQLGECTVSWTNDDMLTISDAGNRPAHKPQLWYPVLRSGTDP 312

Query: 195 LRNKDGEKLHP 205
            R     + +P
Sbjct: 313 FRENAPNQFYP 323



 Score = 43.4 bits (101), Expect = 0.052,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 10/98 (10%)

Query: 201 EKLHPTQKPEALLSRILV--SSTKPGDIILDPFFGSGTSGAVAKKLRRS------FIGIE 252
           ++  P  K    +  +L      K    +LD F GSGT+     +L R        I I 
Sbjct: 466 DRKFPFPKSLYAVEDVLRFFLLEKKEATVLDFFSGSGTTLHAVLRLNRQDQGKRVCIAIT 525

Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLT--GKRTEPRV 288
             +   D   K  +  +  G+ E   L      T+PR+
Sbjct: 526 NNEVASDEQRKLRSEAKRPGDKEWEQLGICEYITKPRI 563


>gi|110004831|emb|CAK99164.1| hypothetical n-6 adenine-specific dna methyltransferase c-terminal
           truncated protein [Spiroplasma citri]
          Length = 163

 Score = 60.4 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 21/160 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNL-QLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++  G+S+ +L+K+P KS+DLI  DPPY    +  +L   +  +   +    D   S   
Sbjct: 7   ELYLGDSLEILKKIPDKSIDLILTDPPYLYPDIAKKLENKEKHIKYNLKKIQDPNCSNIQ 66

Query: 81  Y------DAFTR----------AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
           Y        F +          ++     R++K    +  +        +  +       
Sbjct: 67  YQIRKRELEFLQGEFISSFDIPSYFKEWMRIIKKPNFIIYLSKQQLKDYLFEI--ENYNL 124

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
               I+++K+N  P+    R     E  +W          
Sbjct: 125 KFELIIYKKTNDAPSNNIYRK--DKELCLWLKDFNIYYNR 162


>gi|317009391|gb|ADU79971.1| adenine specific DNA methyltransferase [Helicobacter pylori India7]
          Length = 622

 Score = 60.4 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 58/167 (34%), Gaps = 28/167 (16%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY----RPDHSLVDAVTDSWD 73
           + II G+++  L+ L +   + + +I+ DPPYN   +  +Y    R D+  +       +
Sbjct: 102 NAIIIGDNLDALKLLKSAYSEKIKMIYIDPPYNTGKDDFIYTDNFRQDYQKILREVGLME 161

Query: 74  KFSSFEA--------------------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
              + E                     + +F    L   R +LK +G +++    +    
Sbjct: 162 IDENGEEIESESLKFFKNTQGSKTHSGWLSFMLPRLKLARDLLKEDGVIFISIDDNECAN 221

Query: 114 IGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
           +  +   +           RK+    N         HE L+  + + 
Sbjct: 222 LKILCDEIFGEGNFVADFIRKTKSTTNDAKTGVNYQHEFLLCYAKNK 268



 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 13/99 (13%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQ 255
           +     K    +++I+  +T+ GDIILD F GSGT+     +L       R FI +++ +
Sbjct: 401 EYFSYPKGVDFMAKIVEHATEKGDIILDFFAGSGTTAHAVMELNAEDKGNREFILVQIDE 460

Query: 256 D------YIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
           +        D     + S +P+ + ++T+   KR   ++
Sbjct: 461 EIKEDKSAYDFCKNVLKSAKPVIS-DITIERVKRAASKI 498


>gi|194015654|ref|ZP_03054270.1| type III DNA modification methyltransferase [Bacillus pumilus ATCC
           7061]
 gi|194013058|gb|EDW22624.1| type III DNA modification methyltransferase [Bacillus pumilus ATCC
           7061]
          Length = 634

 Score = 60.4 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 44/118 (37%), Gaps = 27/118 (22%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGI- 251
           D  K+    KP  LL R+L   T+  DI+LD F GS T+     +L       R FI + 
Sbjct: 376 DQPKIFSHPKPVGLLKRLLEVFTEKNDIVLDFFSGSATTAHATIQLNSEDEGNRKFILVQ 435

Query: 252 ------EMKQDY-------IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
                 E  + Y        DI  +RI             +  +  E +    +LVE 
Sbjct: 436 LPETLDEKSEAYKIGYKTICDIGEERIRRA-------GEKIKAELKEKKSQAGMLVES 486



 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 65/205 (31%), Gaps = 29/205 (14%)

Query: 7   LAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLN--GQLYRPD 61
           L I E   +    ++  I+G+++ VL+ L       + +I+ DPPYN   +   +    D
Sbjct: 77  LPIIEKSKNFDTTENLYIEGDNLEVLKLLQKSYNGKIKMIYIDPPYNTGRDFVYKDNFKD 136

Query: 62  ---------------HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
                           +++   T+S  +F +   +     A L   R +L   G + +  
Sbjct: 137 GIQNYLEQTGQVDTHGNMISTNTESNGRFHT--DWLNMMYARLKLSRNLLSDKGVICINI 194

Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG--- 163
                 ++  +L  +                         + H+ +   +   +      
Sbjct: 195 GEEEHEKLKFILNEIYGEKNLLGTIIWKKKTNGNNQGHIPSIHDYIYCYAKKIEMINEKE 254

Query: 164 ----YTFNYDALKAANEDVQMRSDW 184
                T  + +   +N D   R  W
Sbjct: 255 IGLLPTEEFLSKNYSNPDNDTRGIW 279


>gi|237750644|ref|ZP_04581124.1| DNA methyltransferase C1 [Helicobacter bilis ATCC 43879]
 gi|229373734|gb|EEO24125.1| DNA methyltransferase C1 [Helicobacter bilis ATCC 43879]
          Length = 359

 Score = 60.4 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 31/51 (60%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           +P +    +    + + +K GDI+LDPF GSGT+   ++ L+R+ IG ++ 
Sbjct: 18  YPAKFIIDMALHYISNYSKQGDIVLDPFCGSGTTLLASRILKRNAIGFDIN 68



 Score = 38.4 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 22/140 (15%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSL---------VDAVTDSWDKFSSF----EAYDAFTR 86
           V LI   PPY    +  LY     L         +D    S  ++SS     E ++    
Sbjct: 219 VSLILTSPPYPNTYDYYLYHKHRMLWLDFNVKFSMDNEIGSRREYSSLKLPKEKFNKDLF 278

Query: 87  AWLLACRRVLKPNGTLWVIGS--------YHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
                C ++LK +G + +I          YH    + ++ +   + ++            
Sbjct: 279 EIFFECNKILKRHGFVVIIMGDGKIAGKIYHAKDELVSLCEVFQWKLIKHSYSELDKTSR 338

Query: 139 NF-RGRRFQNAHETLIWASP 157
           +F    R +N  E ++    
Sbjct: 339 SFSSAFRTKNKKEHILIFQK 358


>gi|206900883|ref|YP_002251611.1| putative DNA methylase [Dictyoglomus thermophilum H-6-12]
 gi|206739986|gb|ACI19044.1| putative DNA methylase [Dictyoglomus thermophilum H-6-12]
          Length = 311

 Score = 60.4 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 45/122 (36%), Gaps = 5/122 (4%)

Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
           RF   +E +I      K              N   +  + W  P        +       
Sbjct: 18  RFVEENEFVIIEDVKVKLNKNWDIKSYSPPENYTPEKTTVWSFPDRGSWATHKGNYRGNW 77

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
            P      +   +++  T  GD +LD   GSGT+   AK L R+ IG+++  D + +A  
Sbjct: 78  SPY-----IPRNLILKYTAKGDWVLDQMMGSGTTLVEAKLLERNAIGVDINLDAVMVALD 132

Query: 264 RI 265
           R+
Sbjct: 133 RL 134



 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 57/184 (30%), Gaps = 23/184 (12%)

Query: 7   LAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
            + N       E   K   G++ + L K+   S+DLI   PPY   ++    +     + 
Sbjct: 136 FSYNPLFPKYSEPIIKTYWGDARN-LNKIEDNSIDLIATHPPYAGIISYTKNKKQSDDLS 194

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNI-------FRIGTML 118
            +          E Y            RVLKP      +IG            +R+  + 
Sbjct: 195 QL--------PLEEYLKEMEKVAEESFRVLKPGKVCAILIGDTRKHKYYVPIAYRVMQVF 246

Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNA------HETLIWASPSPKAKGYTFNYDALK 172
             + F +  DI+  + N        R +        HE +         K Y     ++K
Sbjct: 247 LEVGFILKEDIIKLQWNMKATRERWRAKEYEFYLIGHEHIFVFRKPEDEKEYKKYKFSIK 306

Query: 173 AANE 176
              +
Sbjct: 307 WWKD 310


>gi|110636124|ref|YP_676332.1| putative RNA methylase [Mesorhizobium sp. BNC1]
 gi|110287108|gb|ABG65167.1| putative RNA methylase [Chelativorans sp. BNC1]
          Length = 393

 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 8/99 (8%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP--TQKPEALLSRILVS-STKP 223
           ++D             DW  P      R+ + + E +HP   +    L   +L     +P
Sbjct: 17  DFDLPSRPEHKALSSVDWDFP-----NRIAHSEIEGVHPYPAKFVAELPRAVLECLPVQP 71

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           G  +LDPF GSGT+   +++     +GI++      ++ 
Sbjct: 72  GTAVLDPFCGSGTTLVESQRRGFRSVGIDLNPIACLMSR 110


>gi|296448055|ref|ZP_06889959.1| DNA methylase N-4/N-6 domain protein [Methylosinus trichosporium
           OB3b]
 gi|296254455|gb|EFH01578.1| DNA methylase N-4/N-6 domain protein [Methylosinus trichosporium
           OB3b]
          Length = 70

 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 32/51 (62%)

Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            +T PGD++LDP  GSGTS  VA++  R +I I+  +  + +A  R+ S +
Sbjct: 1   MTTDPGDLVLDPTCGSGTSAHVAEQWGRRWITIDTSRVALALARTRLMSAR 51


>gi|187777772|ref|ZP_02994245.1| hypothetical protein CLOSPO_01364 [Clostridium sporogenes ATCC
           15579]
 gi|187774700|gb|EDU38502.1| hypothetical protein CLOSPO_01364 [Clostridium sporogenes ATCC
           15579]
          Length = 652

 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 70/196 (35%), Gaps = 27/196 (13%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHS--------LVDAVTDSW 72
           I+G+++ VL+ L       + +I+ DPPYN   N  +Y+ D+         +   V +  
Sbjct: 92  IEGDNLEVLKLLQKSYQNKIKMIYIDPPYNTG-NDFVYKDDYKDNLKNYLEITGQVDEEG 150

Query: 73  DKFSSFEA--------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN-- 122
           ++ S+           +       L   R +LK +G +++    +    +  +   +   
Sbjct: 151 NRTSTNSDTGGRYHTNWLNMMYPRLRLARNLLKDDGVIFISIDENEHDNLKLICDEIFAE 210

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
           +    +IVW+  +             HE +++            ++   K   +D+    
Sbjct: 211 YNFAGEIVWKNGS---KNDQDYISMQHEYIMFYVRDKNFNK--GDWKEKKEGLDDIFRAF 265

Query: 183 DWLIPICSGSERLRNK 198
           +     C  +    +K
Sbjct: 266 EGFYKECGDNWGEIHK 281



 Score = 43.8 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 21/98 (21%)

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVS-STKPGDIILDPFFGSGTSGAVAKKL------ 244
           S+ L+N  G K     K   LL  I  S   +  DI+LD F GSGT+     K+      
Sbjct: 397 SKYLKNLLGGKYFNNPKDSDLLEGIFKSIGLEKEDIVLDFFSGSGTTAQAIMKMNTKDNG 456

Query: 245 RRSFIGI-------EMKQDY-------IDIATKRIASV 268
            R  I +       E ++ Y        +I  +RI   
Sbjct: 457 NRKVILVQIPENIDEKEEAYKAGYKNICEIGKERIRRA 494


>gi|254251037|ref|ZP_04944355.1| Adenine specific DNA methylase Mod [Burkholderia dolosa AUO158]
 gi|124893646|gb|EAY67526.1| Adenine specific DNA methylase Mod [Burkholderia dolosa AUO158]
          Length = 672

 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 55/154 (35%), Gaps = 17/154 (11%)

Query: 17  FEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLN-------GQLYRPDHSLVD 66
            + +  +I+G+++ V++ L    A  V L++ DPPYN   +           R   S+  
Sbjct: 99  DDTRHLMIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTGSDFVYPDDFSDSIRHYLSITG 158

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLK-------PNGTLWVIGSYHNIFRIGTMLQ 119
                  + ++ EA   F   WL      LK         G + V    H +  +  ML+
Sbjct: 159 QAEGGVKRSTNTEANGRFHTDWLNMMYPRLKLVHALLSDEGLIVVHIDEHEVHALVLMLR 218

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
            +        V       P    R     HE+L+
Sbjct: 219 EIFGEENELGVAVWDKRNPKGDARGIAYQHESLV 252



 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 78/250 (31%), Gaps = 23/250 (9%)

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA---------CRRVLKPNGTLWVIGSYH 109
           R    ++DA  D+  +  + +      RAWL A             L  +G ++ + S  
Sbjct: 272 RNAQRMLDAAHDAMYRSGNPKDAQKAYRAWLKAQTNLSGGEVMYDRLSADGRVYRLVS-M 330

Query: 110 NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
                          +++ +  +        RG R   A    +      +         
Sbjct: 331 AWPNKKKAPDEYFTPLIHPVTGKP--CAMPARGWRNPPATMQALLERGQIEFGPDETTQP 388

Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
                 ++    +   +   +GS+    K         KP    + ++   T+  DI+LD
Sbjct: 389 QRIYYLDENMYENVPSVLPFAGSDDALLKALGIPFEQPKPVDFAAAVIGWCTRGDDIVLD 448

Query: 230 PFFGSGTSGAVAKKLR------RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            F GSG++G    ++       R +I +++ +     A  R    Q       T L    
Sbjct: 449 CFAGSGSTGHAVMQVNATDGGARRYILVQLPE-----ALDRRDKAQQAAADFCTKLKKPP 503

Query: 284 TEPRVAFNLL 293
           T   +    L
Sbjct: 504 TLAEITKERL 513


>gi|294666882|ref|ZP_06732113.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603330|gb|EFF46750.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 354

 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 25/54 (46%)

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           +   +   + PG+ + DPF G G+S   A    R+  G+E+      +A  R+ 
Sbjct: 42  MRPFVRHFSLPGEQVFDPFCGFGSSLLAAALEGRNAHGMEIDPARAQLARARLQ 95


>gi|166712002|ref|ZP_02243209.1| type III restriction-modification system methyltransferase
           [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 631

 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 64/186 (34%), Gaps = 24/186 (12%)

Query: 20  KDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQ-----------------LNGQLYR 59
           K+  I+G+++  L+ L       V +I+ DPPYN                    N +   
Sbjct: 98  KNLFIEGDNLDALKLLQENYLGKVKMIYIDPPYNTGSDFIYEDDFAEDAASYFENSKQID 157

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
              + + A T+S  +F S   + +   A L   + +L+ +GT+++         +  +  
Sbjct: 158 QAGNRLVANTESNGRFHS--DWLSMMFARLRLAKNLLRDDGTIFISIDDFEASNLRALCD 215

Query: 120 NLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
            +          VW++ +   +       +    L +     +  G    YD     + D
Sbjct: 216 EIFGSQNYYCTFVWKRRSGAMDSVDNTSVDHEYVLCYGKSKGRLAGIERTYDGYTNPDND 275

Query: 178 VQMRSD 183
            +    
Sbjct: 276 PRGPWK 281



 Score = 40.0 bits (92), Expect = 0.61,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 13/113 (11%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRI-LVSSTKPGDIILDPFFGSGTSGAVAKKLRR--- 246
           G+  L++  G KL P  K   L+S +      + GDI+LD F GS T+      +     
Sbjct: 381 GTRELQDIFGAKLFPHPKSTQLVSSLASQCRLEEGDIVLDFFAGSATTAHAVLAMNANSG 440

Query: 247 ---SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
               FI +++ ++  +  ++           +      K    RV   +L E 
Sbjct: 441 SNVRFILVQIPEE-CETGSQ-----AKKDGFQTIADISKERVRRVGEKILKES 487


>gi|156741279|ref|YP_001431408.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156232607|gb|ABU57390.1| DNA methylase N-4/N-6 domain protein [Roseiflexus castenholzii DSM
           13941]
          Length = 356

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 57/157 (36%), Gaps = 17/157 (10%)

Query: 104 VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
                H  + +   +        N+    K  P  +F G+R  N  E   +    P  KG
Sbjct: 208 YFTKDHLWYALPPEIFIRMVSYANEYGDSKGRPYFSFDGKRPANQQE---YEKIFPTFKG 264

Query: 164 YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTK 222
                           + + W  P     ER+R     K  H  QKP  L+  I+ SS+ 
Sbjct: 265 -------------KYGITNVWNHPPLHNRERVRFPGSSKYAHLNQKPVNLMELIIESSSN 311

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
            GD+I +PF G  T+G VA    R+    E+     D
Sbjct: 312 LGDVIWEPFGGLCTAGLVAYLTSRTAYCAEIDDHIYD 348


>gi|315425237|dbj|BAJ46906.1| DNA methylase [Candidatus Caldiarchaeum subterraneum]
          Length = 325

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 1/94 (1%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           + S  +R         +       +   +++  TKPG+++LD   GSGT+   A  L R+
Sbjct: 70  VWSFPDRGDWATHSGDYRGNWSPYVPRNLILKYTKPGELVLDQMVGSGTTLVEATLLGRN 129

Query: 248 FIGIEMKQDYIDIATKRIA-SVQPLGNIELTVLT 280
            IG+++  +   +   R+     PL   +  V+ 
Sbjct: 130 AIGVDINYEACILTLDRLNFEFHPLDEQQEPVIK 163



 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 45/162 (27%), Gaps = 19/162 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K+  G++   L  +  +SVDLI   PPY   +     RP+  L          +   E Y
Sbjct: 163 KVYHGDAAK-LNIIEDESVDLIATHPPYWNIIPYSRKRPEGDLS--------AYRKLEDY 213

Query: 82  DAFTRAWLLACRRVLKPNGTL-WVIGSYHNI-------FRIGTMLQNLNFWILNDIVWRK 133
                       RVLKP      +IG              +        F +  DI+  +
Sbjct: 214 LGKMMQIARESYRVLKPGRYCAILIGDTRKHKHYVPISTYVMLKFLQAGFVLAEDIIKLQ 273

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
                     ++   +              Y F     +   
Sbjct: 274 HK--MKTTREKWSGKNFEQYGFHKIAHEHLYIFRKPENEEER 313


>gi|221201789|ref|ZP_03574826.1| type III DNA modification methyltransferase [Burkholderia
           multivorans CGD2M]
 gi|221178209|gb|EEE10619.1| type III DNA modification methyltransferase [Burkholderia
           multivorans CGD2M]
          Length = 840

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 56/157 (35%), Gaps = 23/157 (14%)

Query: 17  FEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHS---------- 63
            + +  +I+G+++ V++ L    A  V L++ DPPYN   N  +Y  D S          
Sbjct: 267 DDTRHLMIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTG-NDFVYADDFSDSIRHYLAMT 325

Query: 64  -------LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
                       T++  +F +   +       L     +L   G + V    H +  +  
Sbjct: 326 GQTEGGVKRSTNTEANGRFHT--DWLNMMYPRLKLAHALLSEEGLIVVHIDEHEVHALVL 383

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           ML+ +        V       P    R     HE+L+
Sbjct: 384 MLREIFGEENELGVAVWDKRNPKGDARGIAYQHESLV 420



 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 68/210 (32%), Gaps = 18/210 (8%)

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA---------CRRVLKPNGTLWVIGSYH 109
           R    ++DA  D+  +  + +      RAW+ A             L  +G ++ + S  
Sbjct: 440 RNAQRMLDAAHDAMYRSGTPKDAAKAYRAWVKAQTNLSGGEAMYDRLSEDGRVYRLVS-M 498

Query: 110 NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
                          +L+ +  +        RG R   A    +      +         
Sbjct: 499 AWPNKKKAPDEYFTPLLHPVTGKP--CAMPARGWRNPPATMQALLERGQIEFGPDETTQP 556

Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
                 ++    +   +    GS+    K         KP    + ++   T+  DI+LD
Sbjct: 557 QRIYYLDENMYENVPSVLPFGGSDDALLKALGIPFEQPKPVDFAAAVIGWCTRGDDIVLD 616

Query: 230 PFFGSGTSGAVAKKLR------RSFIGIEM 253
            F GSG++G    ++       R +I +++
Sbjct: 617 CFAGSGSTGHAVMQVNATDGGARRYILVQL 646


>gi|221207705|ref|ZP_03580713.1| type III DNA modification methyltransferase [Burkholderia
           multivorans CGD2]
 gi|221172551|gb|EEE04990.1| type III DNA modification methyltransferase [Burkholderia
           multivorans CGD2]
          Length = 668

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 56/157 (35%), Gaps = 23/157 (14%)

Query: 17  FEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHS---------- 63
            + +  +I+G+++ V++ L    A  V L++ DPPYN   N  +Y  D S          
Sbjct: 95  DDTRHLMIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTG-NDFVYADDFSDSIRHYLAMT 153

Query: 64  -------LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
                       T++  +F +   +       L     +L   G + V    H +  +  
Sbjct: 154 GQTEGGVKRSTNTEANGRFHT--DWLNMMYPRLKLAHALLSEEGLIVVHIDEHEVHALVL 211

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           ML+ +        V       P    R     HE+L+
Sbjct: 212 MLREIFGEENELGVAVWDKRNPKGDARGIAYQHESLV 248



 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 68/210 (32%), Gaps = 18/210 (8%)

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA---------CRRVLKPNGTLWVIGSYH 109
           R    ++DA  D+  +  + +      RAW+ A             L  +G ++ + S  
Sbjct: 268 RNAQRMLDAAHDAMYRSGTPKDAAKAYRAWVKAQTNLSGGEAMYDRLSEDGRVYRLVS-M 326

Query: 110 NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
                          +L+ +  +        RG R   A    +      +         
Sbjct: 327 AWPNKKKAPDEYFTPLLHPVTGKP--CAMPARGWRNPPATMQALLERGQIEFGPDETTQP 384

Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
                 ++    +   +    GS+    K         KP    + ++   T+  DI+LD
Sbjct: 385 QRIYYLDENMYENVPSVLPFGGSDDALLKALGIPFEQPKPVDFAAAVIGWCTRGDDIVLD 444

Query: 230 PFFGSGTSGAVAKKLR------RSFIGIEM 253
            F GSG++G    ++       R +I +++
Sbjct: 445 CFAGSGSTGHAVMQVNATDGGARRYILVQL 474


>gi|221214549|ref|ZP_03587519.1| type III DNA modification methyltransferase [Burkholderia
           multivorans CGD1]
 gi|221165439|gb|EED97915.1| type III DNA modification methyltransferase [Burkholderia
           multivorans CGD1]
          Length = 672

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 56/157 (35%), Gaps = 23/157 (14%)

Query: 17  FEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHS---------- 63
            + +  +I+G+++ V++ L    A  V L++ DPPYN   N  +Y  D S          
Sbjct: 99  DDTRHLMIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTG-NDFVYADDFSDSIRHYLAMT 157

Query: 64  -------LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
                       T++  +F +   +       L     +L   G + V    H +  +  
Sbjct: 158 GQTEGGVKRSTNTEANGRFHT--DWLNMMYPRLKLAHALLSEEGLIVVHIDEHEVHALVL 215

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           ML+ +        V       P    R     HE+L+
Sbjct: 216 MLREIFGEENELGVAVWDKRNPKGDARGIAYQHESLV 252



 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 68/210 (32%), Gaps = 18/210 (8%)

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA---------CRRVLKPNGTLWVIGSYH 109
           R    ++DA  D+  +  + +      RAW+ A             L  +G ++ + S  
Sbjct: 272 RNAQRMLDAAHDAMYRSGTPKDAAKAYRAWVKAQTNLSGGEAMYDRLSEDGRVYRLVS-M 330

Query: 110 NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
                          +L+ +  +        RG R   A    +      +         
Sbjct: 331 AWPNKKKAPDEYFTPLLHPVTGKP--CAMPARGWRNPPATMQALLERGQIEFGPDETTQP 388

Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
                 ++    +   +    GS+    K         KP    + ++   T+  DI+LD
Sbjct: 389 QRIYYLDENMYENVPSVLPFGGSDDALLKALGIPFEQPKPVDFAAAVIGWCTRGDDIVLD 448

Query: 230 PFFGSGTSGAVAKKLR------RSFIGIEM 253
            F GSG++G    ++       R +I +++
Sbjct: 449 CFAGSGSTGHAVMQVNATDGGARRYILVQL 478


>gi|189348934|ref|YP_001944562.1| adenine-specific DNA methyltransferase [Burkholderia multivorans
           ATCC 17616]
 gi|189332956|dbj|BAG42026.1| adenine-specific DNA methyltransferase [Burkholderia multivorans
           ATCC 17616]
          Length = 668

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 56/157 (35%), Gaps = 23/157 (14%)

Query: 17  FEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHS---------- 63
            + +  +I+G+++ V++ L    A  V L++ DPPYN   N  +Y  D S          
Sbjct: 95  DDTRHLMIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTG-NDFVYADDFSDSIRHYLAMT 153

Query: 64  -------LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
                       T++  +F +   +       L     +L   G + V    H +  +  
Sbjct: 154 GQTEGGVKRSTNTEANGRFHT--DWLNMMYPRLKLAHALLSEEGLIVVHIDEHEVHALVL 211

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           ML+ +        V       P    R     HE+L+
Sbjct: 212 MLREIFGEENELGVAVWDKRNPKGDARGIAYQHESLV 248



 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 68/210 (32%), Gaps = 18/210 (8%)

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA---------CRRVLKPNGTLWVIGSYH 109
           R    ++DA  D+  +  + +      RAW+ A             L  +G ++ + S  
Sbjct: 268 RNAQRMLDAAHDAMYRSGTPKDAAKAYRAWVKAQTNLSGGEAMYDRLSEDGRVYRLVS-M 326

Query: 110 NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
                          +L+ +  +        RG R   A    +      +         
Sbjct: 327 AWPNKKKAPDEYFTPLLHPVTGKP--CAMPARGWRNPPATMQALLERGQIEFGPDETTQP 384

Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
                 ++    +   +    GS+    K         KP    + ++   T+  DI+LD
Sbjct: 385 QRIYYLDENMYENVPSVLPFGGSDDALLKALGIPFEQPKPVDFAAAVIGWCTRRDDIVLD 444

Query: 230 PFFGSGTSGAVAKKLR------RSFIGIEM 253
            F GSG++G    ++       R +I +++
Sbjct: 445 CFAGSGSTGHAVMQVNATDGGARRYILVQL 474


>gi|161523209|ref|YP_001578221.1| adenine-specific DNA-methyltransferase [Burkholderia multivorans
           ATCC 17616]
 gi|160340638|gb|ABX13724.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia multivorans ATCC 17616]
          Length = 688

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 56/157 (35%), Gaps = 23/157 (14%)

Query: 17  FEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHS---------- 63
            + +  +I+G+++ V++ L    A  V L++ DPPYN   N  +Y  D S          
Sbjct: 115 DDTRHLMIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTG-NDFVYADDFSDSIRHYLAMT 173

Query: 64  -------LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
                       T++  +F +   +       L     +L   G + V    H +  +  
Sbjct: 174 GQTEGGVKRSTNTEANGRFHT--DWLNMMYPRLKLAHALLSEEGLIVVHIDEHEVHALVL 231

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           ML+ +        V       P    R     HE+L+
Sbjct: 232 MLREIFGEENELGVAVWDKRNPKGDARGIAYQHESLV 268



 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 68/210 (32%), Gaps = 18/210 (8%)

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA---------CRRVLKPNGTLWVIGSYH 109
           R    ++DA  D+  +  + +      RAW+ A             L  +G ++ + S  
Sbjct: 288 RNAQRMLDAAHDAMYRSGTPKDAAKAYRAWVKAQTNLSGGEAMYDRLSEDGRVYRLVS-M 346

Query: 110 NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
                          +L+ +  +        RG R   A    +      +         
Sbjct: 347 AWPNKKKAPDEYFTPLLHPVTGKP--CAMPARGWRNPPATMQALLERGQIEFGPDETTQP 404

Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
                 ++    +   +    GS+    K         KP    + ++   T+  DI+LD
Sbjct: 405 QRIYYLDENMYENVPSVLPFGGSDDALLKALGIPFEQPKPVDFAAAVIGWCTRRDDIVLD 464

Query: 230 PFFGSGTSGAVAKKLR------RSFIGIEM 253
            F GSG++G    ++       R +I +++
Sbjct: 465 CFAGSGSTGHAVMQVNATDGGARRYILVQL 494


>gi|108562687|ref|YP_627003.1| type III adenine methyltransferase [Helicobacter pylori HPAG1]
 gi|107836460|gb|ABF84329.1| type III adenine methyltransferase [Helicobacter pylori HPAG1]
          Length = 390

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 53/140 (37%), Gaps = 17/140 (12%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
             K+    ++  L+++  +S+  I+ DPPYN + +   Y   H+                
Sbjct: 1   MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKNSNFEYEDAHT---------------- 44

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y+ + +  L+  + VLK +G +++    + +  +  +   +     N +    +     
Sbjct: 45  DYEKWIKEHLILAKAVLKQSGCIFISIDDNKMAEVKIIANEIFGT-RNFLGTFITKQATR 103

Query: 140 FRGRRFQNAHETLIWASPSP 159
              +     HE ++  + + 
Sbjct: 104 SNAKHINITHEYVLSYAKNK 123



 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 11/107 (10%)

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           L + +         +    LK + ++     D+      G++ L     + L  T KP A
Sbjct: 235 LYYQNRLIFKNNRPYEKYYLKESQDNCLSVLDFY--SRQGTKDLEKLGLKGLFKTPKPVA 292

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           L+  +L+ ST    IILD F GSGT+             IE+ +DY 
Sbjct: 293 LIKYLLLCSTPKDSIILDFFAGSGTTAQAV---------IEVNKDYY 330


>gi|291043622|ref|ZP_06569338.1| twin-argninine leader-binding protein DmsD [Neisseria gonorrhoeae
           DGI2]
 gi|291012085|gb|EFE04074.1| twin-argninine leader-binding protein DmsD [Neisseria gonorrhoeae
           DGI2]
          Length = 201

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 23/147 (15%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       V LI+ DPPYN + +   Y              DKF S
Sbjct: 49  NLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTETDSFAY-------------NDKF-S 94

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN--LNFWILNDIVWRKSN 135
              +  F +  L   + +LK +G ++V         +  +L         +N I  + S 
Sbjct: 95  HSTWLTFMKNRLEIAKELLKDDGLIFVQCDDKEQAYLKVLLDETFTRENFINCIAVKMSE 154

Query: 136 P----MPNFRGRRFQNAHETLIWASPS 158
           P    M +   R  +     LI+ + +
Sbjct: 155 PSGNKMAHTSHRLPKIKEYILIYKNKN 181


>gi|148926992|ref|ZP_01810668.1| adenine specific DNA methyltransferase (mod) [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|145844400|gb|EDK21509.1| adenine specific DNA methyltransferase (mod) [Campylobacter jejuni
           subsp. jejuni CG8486]
          Length = 637

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 68/188 (36%), Gaps = 31/188 (16%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP 60
           K   ++++N  +    K+ IIKG+++  L+ L +   + + +I+ DPPYN + +  +Y  
Sbjct: 81  KFHKSLSKNFETT---KNAIIKGDNLHALKLLKSAYYEKIKMIYIDPPYNTKNDKFIYND 137

Query: 61  D------------------------HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
           D                         S +     +     S  A+  F    L   R +L
Sbjct: 138 DFVKEHKKLLIEVGLLEITEEGEEIRSEILNFFINTRGDRSHSAWLGFMLPRLKLARDLL 197

Query: 97  KPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
           + +G +++    +    +  +   +         +        +F G+   +  E ++  
Sbjct: 198 REDGVIFISIDDNEQANLKILCDEIFGEENFVANIVWHKKDNASFLGKNIVDLIEYILIY 257

Query: 156 SPSPKAKG 163
             S   +G
Sbjct: 258 RKSETFEG 265



 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 15/95 (15%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQD----- 256
           KP  L+ + + + TK  DIILD F GSGT+     +L       R FI +++ +      
Sbjct: 419 KPSKLIKKFIKNVTKNDDIILDFFAGSGTTAQAVMELNAEDNGNRKFILVQLDEKIDENK 478

Query: 257 ---YIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
                D     + S  P+ + ++T+   KR   ++
Sbjct: 479 SKIAYDFCKNELGSENPVIS-DITIERVKRAGEKI 512


>gi|126179426|ref|YP_001047391.1| DNA methylase N-4/N-6 domain-containing protein [Methanoculleus
           marisnigri JR1]
 gi|125862220|gb|ABN57409.1| DNA methylase N-4/N-6 domain protein [Methanoculleus marisnigri
           JR1]
          Length = 1055

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 68/176 (38%), Gaps = 18/176 (10%)

Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL--IWASPSPKAKGY- 164
           Y+N       L+    +I   I+ + S+        + +   E +  I          Y 
Sbjct: 672 YYNPSNKEISLEGNGSFIK--ILPKLSDGSDGRWRWKKETVRENIQKILIKKVSTRDEYD 729

Query: 165 --TFNYDALKAANEDVQMRSDWLIPICS---GSERLRNKDGEKLHPTQKPEALLSRILVS 219
               +Y  +    +  + +S WL    S   G+   +   GE      K   L+  IL  
Sbjct: 730 VFQKDYLLIDGEEKGTKAKSIWLDTKYSSDYGTHAYKKLLGEVQFDNPKSPELIKDILHI 789

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYID-IATKRIASV 268
           S+   DIILD F GSGT+G    ++       R ++ IE+  DY+D I   RI  V
Sbjct: 790 SSGEEDIILDFFAGSGTTGQSVLEINKTQTSTRKYVLIELG-DYLDFIIKPRIQKV 844



 Score = 41.1 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 50/135 (37%), Gaps = 15/135 (11%)

Query: 28  SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
           ++++L++   + V  I+ DPPYN   +  +YR ++     ++   D+             
Sbjct: 504 ALNLLQERYREQVKCIYIDPPYNTGNDEFVYRDNYQHSSWLSMMGDR------------- 550

Query: 88  WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR-RFQ 146
            L     ++  +G L+     H I  + +++ +    +         N +     R    
Sbjct: 551 -LNLAHTIISNHGALFSSIDDHEIVNLRSLMNSTFGSLNFISTISVVNNLKGRSDRANIA 609

Query: 147 NAHETLIWASPSPKA 161
            AHE L+    +   
Sbjct: 610 TAHENLLMYIRNDFK 624


>gi|71275850|ref|ZP_00652134.1| methyltransferase [Xylella fastidiosa Dixon]
 gi|71899346|ref|ZP_00681506.1| methyltransferase [Xylella fastidiosa Ann-1]
 gi|71163428|gb|EAO13146.1| methyltransferase [Xylella fastidiosa Dixon]
 gi|71730860|gb|EAO32931.1| methyltransferase [Xylella fastidiosa Ann-1]
          Length = 316

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 10/112 (8%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
            +    W + II+G++   L  L      ++  I+ DPPYN      +Y       D   
Sbjct: 55  SHGAAPWPNLIIEGDNFDALRALRMTHRGAIRCIYIDPPYNTGNRDFVYN------DCFV 108

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
           D   ++     +  F    L   + +L  +G + V    + +FR+G ++  +
Sbjct: 109 DKTHRYRH-SLWLEFMYRRLQLAKELLADDGVISVSIDDNELFRLGMLMDRV 159


>gi|71275849|ref|ZP_00652133.1| methyltransferase [Xylella fastidiosa Dixon]
 gi|71899345|ref|ZP_00681505.1| methyltransferase [Xylella fastidiosa Ann-1]
 gi|71163427|gb|EAO13145.1| methyltransferase [Xylella fastidiosa Dixon]
 gi|71730859|gb|EAO32930.1| methyltransferase [Xylella fastidiosa Ann-1]
          Length = 140

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 6/55 (10%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGI 251
           +  T KP +L+ RIL  +T     +LD F GSGT+     KL       R FI I
Sbjct: 1   MFNTPKPVSLIERILSVTTDKEAWVLDFFAGSGTTAHAVAKLNAEDGGHRRFILI 55


>gi|15611314|ref|NP_222965.1| type II DNA modification (methyltransferase [Helicobacter pylori
           J99]
 gi|4154761|gb|AAD05820.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
           pylori J99]
          Length = 390

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 52/140 (37%), Gaps = 17/140 (12%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
             K+    ++  L+++  +S+  I+ DPPYN + +   Y   H+                
Sbjct: 1   MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYEDAHA---------------- 44

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y+ +    L+  + VLK +G +++    + +  +  +   +     N +    +     
Sbjct: 45  DYEKWIEEHLILAKAVLKQSGCIFISMDDNKMAEVKIIANEIFGT-RNFLGTFITKQATR 103

Query: 140 FRGRRFQNAHETLIWASPSP 159
              +     HE ++  + + 
Sbjct: 104 SNAKHINITHEYVLSYAKNK 123



 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 11/107 (10%)

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           L + +         +    LK + ++     D+      G++ L     + L  T KP A
Sbjct: 235 LYYQNRLIFKNNRPYEKYYLKESQDNCLSVLDFY--SRQGTKDLEKLGLKGLFKTPKPVA 292

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           L+  +L+ ST    IILD F GSGT+             IE+ +DY 
Sbjct: 293 LIKYLLLCSTPKDSIILDFFAGSGTTAQAV---------IEVNKDYY 330


>gi|326403283|ref|YP_004283364.1| putative DNA methylase [Acidiphilium multivorum AIU301]
 gi|325050144|dbj|BAJ80482.1| putative DNA methylase [Acidiphilium multivorum AIU301]
          Length = 410

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 1/87 (1%)

Query: 183 DWLIP-ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
           D+ I    +  +R  +   E  +       L +  +   T PGD++ DPF G GT+   A
Sbjct: 43  DYFINAFWTSGQRQAHAIHEISYRACFKPQLPAFFISRLTAPGDLVFDPFMGRGTTLVQA 102

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASV 268
             ++R   G ++      +   R+  +
Sbjct: 103 ALMQRRAAGNDINPLAALMCRPRLRPI 129



 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 14/133 (10%)

Query: 35  LPAKSVDLIFADPPYN--LQLNGQLY-RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           L A+SV L+   PP+   +      + R   + +D    + D   S  A+    R  L  
Sbjct: 274 LAARSVALVVTSPPFLDVVDYAADNWLRCWFAGIDPGAVAIDLHRSEAAWTEMVRRVLAE 333

Query: 92  CRRVLKPNGTL-WVIGSYH----------NIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
             R+++P G + + +G                  G   Q L   +      + SN     
Sbjct: 334 LARLVRPGGHVAFEVGEVRRGRVLLEKRVWQAADGLPFQRLGVLVNLQTFTKTSNCWGVS 393

Query: 141 RGRRFQNAHETLI 153
            G R  N++  ++
Sbjct: 394 NGTRGTNSNRIVM 406


>gi|218461660|ref|ZP_03501751.1| putative DNA methylase protein [Rhizobium etli Kim 5]
          Length = 213

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 34/64 (53%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            P AL+S +L   TKPGD + DPF G GT+  V ++  R   GIE  +   +   +RI +
Sbjct: 28  FPGALVSALLDRFTKPGDAVFDPFVGFGTTFFVCEQRGRLPYGIEADRQRYEWVRERITA 87

Query: 268 VQPL 271
              L
Sbjct: 88  KHHL 91



 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 20/131 (15%)

Query: 20  KDKIIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           K  +I G+S  +    LP   +D     PPY          P     + + +    +  +
Sbjct: 88  KHHLICGDSAELAAFDLPE--MDFCITSPPY---------MPHWHKWNPLYNGDPDYDGY 136

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGS-------YHNIFRIGTMLQNLNFWILNDIVW 131
           + Y    +       + +K N  L V             ++ +G  L  +   +  +I+ 
Sbjct: 137 DVYLKRMQEIYGRICQRMKTNAYLVVQADNLTNEQFSPLVWDLGRALSEV-MTLQGEIMV 195

Query: 132 RKSNPMPNFRG 142
             S  + +  G
Sbjct: 196 NWSEAVESGNG 206


>gi|317179345|dbj|BAJ57133.1| Type II DNA modification enzyme [Helicobacter pylori F30]
          Length = 390

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 56/140 (40%), Gaps = 17/140 (12%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
             K+    ++  L+++  +S+  I+ DPPYN + +   Y   H+                
Sbjct: 1   MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYEDAHA---------------- 44

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y+ + +  L+  + VLK +G +++    + +  +  ++ N  F + N +    +     
Sbjct: 45  DYEKWIKEHLILAKAVLKQSGCIFISIDDNKMAEVK-IIANKIFGMRNFLGTFITKQATR 103

Query: 140 FRGRRFQNAHETLIWASPSP 159
              +     HE ++  + + 
Sbjct: 104 SNAKHINITHEYVLSYAKNK 123



 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 11/107 (10%)

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           L + +         +    LK + ++     D+      G++ L     + L  T KP A
Sbjct: 235 LYYQNRLIFKNNRPYEKYYLKESQDNCLSVLDFY--SRQGTKDLEKLGLKGLFKTPKPVA 292

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           L+  +L+ ST    IILD F GSGT+             IE+ +DY 
Sbjct: 293 LIKYLLLCSTPKDSIILDFFAGSGTTAQAV---------IEVNKDYY 330


>gi|302339016|ref|YP_003804222.1| DNA methylase N-4/N-6 domain protein [Spirochaeta smaragdinae DSM
           11293]
 gi|301636201|gb|ADK81628.1| DNA methylase N-4/N-6 domain protein [Spirochaeta smaragdinae DSM
           11293]
          Length = 837

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 184 WLIPICSGSERLRNKDGE------KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           W   +     R+R  +GE      + H       ++ RI+   +  G+++LDPF G  T 
Sbjct: 730 WHPDVWDDVNRMRTLNGEQARKDLEFHICPLQFDIVERIINRYSSKGEVVLDPFGGLMTV 789

Query: 238 GAVAKKLRRSFIGIEMKQDYID 259
             +A K+ R  IG E+      
Sbjct: 790 PYMAVKMGRYGIGYELNPQSFK 811


>gi|256617065|ref|ZP_05473911.1| predicted protein [Enterococcus faecalis ATCC 4200]
 gi|257088372|ref|ZP_05582733.1| predicted protein [Enterococcus faecalis D6]
 gi|256596592|gb|EEU15768.1| predicted protein [Enterococcus faecalis ATCC 4200]
 gi|256996402|gb|EEU83704.1| predicted protein [Enterococcus faecalis D6]
          Length = 795

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 28/47 (59%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           K   LL R++++ T    IILDPF GSG +   ++  +R F GIE+ 
Sbjct: 39  KSPELLERVILALTGSDSIILDPFLGSGMTLIASQNAQRKFFGIELD 85


>gi|42541077|gb|AAS19435.1| M.RsaI methyltransferase [Rhodobacter sphaeroides]
          Length = 409

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 34/80 (42%)

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
            +  +R  +   E  +       L    +   TKPGD++ DPF G GT+   A  + R  
Sbjct: 49  WTAGQRQAHSIHEVSYRACFKAQLPEFFIGRLTKPGDVVFDPFMGRGTTPVQAALMERQA 108

Query: 249 IGIEMKQDYIDIATKRIASV 268
            G ++    + ++  R+  +
Sbjct: 109 FGNDVNPLSVLLSRPRLRPI 128



 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 35  LPAKSVDLIFADPPYN--LQLNGQLY-RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           +P  SVDL    PP+   +Q     + R   + ++    + D   + EA+       L  
Sbjct: 273 IPDASVDLTVTSPPFLDIVQYAADNWLRCWFAGIEPEAVAIDMHKTEEAWTLMVNRVLRE 332

Query: 92  CRRVLKPNGTL 102
             R+L+P G +
Sbjct: 333 QARILRPGGYV 343


>gi|317008910|gb|ADU79490.1| type III R-M system methyltransferase [Helicobacter pylori India7]
          Length = 384

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 53/140 (37%), Gaps = 17/140 (12%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
             K+    ++  L+++  +S+  I+ DPPYN + +   Y   H+                
Sbjct: 1   MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKNSNFEYEDAHA---------------- 44

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y+ + +  L+  + VLK +G +++    + +  +  +   +     N +    +     
Sbjct: 45  DYEKWIKEHLILAKAVLKQSGCIFISIDDNKMAEVKIIANEIFGT-RNFLGTFITKQATR 103

Query: 140 FRGRRFQNAHETLIWASPSP 159
              +     HE ++  + + 
Sbjct: 104 SNAKHINITHEYVLSYAKNK 123



 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 11/107 (10%)

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           L + +         +    LK + ++     D+      G++ L     + L  T KP  
Sbjct: 235 LYYQNRLIFKNNRPYEKYYLKESQDNCLSVLDFY--SRQGTKDLDKLGLKGLFKTPKPVE 292

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           L+  +L+ ST    IILD F GSGT+             IE+ +DY 
Sbjct: 293 LIKYLLLCSTPKDSIILDFFAGSGTTAQAV---------IEVNKDYY 330


>gi|218134950|ref|ZP_03463754.1| hypothetical protein BACPEC_02855 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990335|gb|EEC56346.1| hypothetical protein BACPEC_02855 [Bacteroides pectinophilus ATCC
           43243]
          Length = 263

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 55/171 (32%), Gaps = 22/171 (12%)

Query: 21  DKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + +I G+++  L+ L  K    +  I+ DPPYN                   + +D    
Sbjct: 40  NMLIHGDNLLALKALENKYTGMIKCIYIDPPYNTG--------------TAFEHYDDNLE 85

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSN 135
              +    +  L   R +L  +GT+W+         +  +   +      +N I     N
Sbjct: 86  HSIWLGIMKKRLEILRNLLAEDGTIWIQIDDEEQAYLKVLCDEIFGRNNFVNMISVNMKN 145

Query: 136 PMPNFRG---RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
                 G   +R +   E ++  + +                +E +Q   D
Sbjct: 146 VAGASGGGEDKRLKKNCEYILVYAKNYDLLPLFNGPYKYTEMSELIQQYID 196


>gi|312878205|ref|ZP_07738132.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795018|gb|EFR11420.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 1012

 Score = 60.0 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 203 LHPTQKPEALLSRILVSSTK-PGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
           +    KP  ++ +I+  S+      ++D F GSGT+     KL       R FI IE+  
Sbjct: 747 IFSNPKPTEIVKKIIYISSNNKYGYVMDFFAGSGTTAHAVMKLNKEDGGKRKFILIEIAD 806

Query: 256 DYIDIATKRIASV 268
            +  +   RI  +
Sbjct: 807 YFYTVIIPRIKKI 819



 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 62/165 (37%), Gaps = 17/165 (10%)

Query: 43  IFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL 102
           I+ DPPYN   +  LY+  +                 ++ +     L   + +L  +G +
Sbjct: 512 IYIDPPYNTGNDDFLYKDSYQ--------------HSSWLSMMENRLKLAKELLSDDGVI 557

Query: 103 WVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
           +V    + +  +  +++ +  N   + +I+W+K N  P    +   + H+ ++  + +  
Sbjct: 558 FVSVDDNEVDNLNKLMKEILGNENFVANIIWKKKNS-PQNDAKWLSDNHDFILLYASNKS 616

Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
                    +    ++   +  D   P       ++  + + ++P
Sbjct: 617 KWKPNLLRRSENQLSKYKNIDDDPRGPWTPSDLSVKTYNEKYVYP 661


>gi|289432020|ref|YP_003461893.1| DNA methylase N-4/N-6 domain protein [Dehalococcoides sp. GT]
 gi|288945740|gb|ADC73437.1| DNA methylase N-4/N-6 domain protein [Dehalococcoides sp. GT]
          Length = 797

 Score = 60.0 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 9/109 (8%)

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-------HP--T 206
           +P     G  +N    +      +  +D      +   +L    G  L       H   +
Sbjct: 20  NPPDYYSGNKYNPHLTQFVETHRKDSNDKYQTKATSIGQLMTSRGGSLGSLIYDQHSYWS 79

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +K    +   +   T  GD+ILDPF GSG +  VA  L R+ IGI++  
Sbjct: 80  KKAYGGIETYIKEFTSTGDLILDPFCGSGATLIVAATLGRNSIGIDLSP 128



 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF-EAYDAF 84
           G+    L  +P+ S+D +F DPPY+ ++                  W       + ++A 
Sbjct: 383 GD----LSAIPSNSIDYVFTDPPYSDKMPYGALNTVWEAWLGFERLWLAEEVIGDRWEAG 438

Query: 85  TRAWLLACRRVLKPNGTL 102
            RA +    RVLKP   +
Sbjct: 439 IRAAMKEVFRVLKPGHWI 456


>gi|57242413|ref|ZP_00370351.1| type II DNA modification methyltransferase [Campylobacter
           upsaliensis RM3195]
 gi|57016698|gb|EAL53481.1| type II DNA modification methyltransferase [Campylobacter
           upsaliensis RM3195]
          Length = 268

 Score = 60.0 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 2/87 (2%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           I +        +    H  QKP  L + ++   TK G ++LDP  G G S   A    R 
Sbjct: 30  INTNYPSNMQHNLRSKHGGQKPPQLCADLIQIFTKKGQLVLDPLCGVGGSLLGAALCDRE 89

Query: 248 FIGIEMKQDYIDIATK--RIASVQPLG 272
            +GIE+ Q +IDI  +  R+ +++   
Sbjct: 90  ALGIEINQQWIDIYKQVARLENLKEFS 116



 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 53/132 (40%), Gaps = 11/132 (8%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD--KFSSFEA 80
           ++ G++   L+++   +VD +  D PY +    +  R   S+  +    ++     S E 
Sbjct: 117 VLLGDANDKLKEIDRNNVDFVLTDVPYWIMDKLEKTRSKSSIRGSKLTKFNDKDLQSKED 176

Query: 81  YDAFTRAWLLACRRVLKPNGTL-WVIGSYHNIFRIGTMLQNL--------NFWILNDIVW 131
           + +  +   +     LK NG +   IG  +       +  +L        +F +  DI+W
Sbjct: 177 WLSEMKQIFINVTPTLKDNGYMAVFIGDMYRGKEFHFLSADLAKSISEISSFTLKADIIW 236

Query: 132 RKSNPMPNFRGR 143
           + +  M +  G 
Sbjct: 237 QDNTKMLHIYGY 248


>gi|320353139|ref|YP_004194478.1| DNA methylase N-4/N-6 domain-containing protein [Desulfobulbus
           propionicus DSM 2032]
 gi|320121641|gb|ADW17187.1| DNA methylase N-4/N-6 domain protein [Desulfobulbus propionicus DSM
           2032]
          Length = 504

 Score = 60.0 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 28/55 (50%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           +KP   L  ++   TK  D+++DPF GSG          R F+GI++    I+ A
Sbjct: 45  KKPIESLCYLVEKCTKEEDVVMDPFLGSGLISLECVLRNRRFVGIDINPFSIEHA 99



 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 67/188 (35%), Gaps = 34/188 (18%)

Query: 2   SQKNSLAINENQNSIFEWKDK--IIKGNSISVLEKLPAKSVDLIFADPP----------- 48
           +++   A++ +  S+    +   +I  +  S L+++P +SV  +  DPP           
Sbjct: 304 AERKYYAVSNDAASVENLGNDAWLINSDCRSALKEIPPESVAFVCTDPPHSDRIPYLELS 363

Query: 49  --------YNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG 100
                   Y++  + ++          V+++ ++  S   Y++    + L   RVLKPNG
Sbjct: 364 ELWNSLLGYSVDFDSEI---------VVSNAKERNKSKINYNSEMTEFFLEISRVLKPNG 414

Query: 101 TL---WVIGSYHNIFRIGTMLQNLNF-WILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
            +   +      +   +  + +       +       S        R+    ++ +I   
Sbjct: 415 YIALYFNARDEESWQYLKNIEKISGTLNFIGCFPMTYSATSVVQDNRKGAMKNDYIIIYQ 474

Query: 157 PSPKAKGY 164
                 G+
Sbjct: 475 KGQPYTGH 482


>gi|170731402|ref|YP_001763349.1| site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia cenocepacia MC0-3]
 gi|169814644|gb|ACA89227.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia cenocepacia MC0-3]
          Length = 668

 Score = 60.0 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 17/154 (11%)

Query: 17  FEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNG---QLYRPDHSLVDAVTD 70
            + +  +I+G+++ V++ L    A  V L++ DPPYN   +      +        A+T 
Sbjct: 95  DDTRHLVIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTGSDFVYPDDFSDSIRHYLAMTG 154

Query: 71  SWD----KFSSFEAYDAFTRAWLLACRRVLK-------PNGTLWVIGSYHNIFRIGTMLQ 119
             D    + ++ EA   F   WL      LK         G + V    H +  +  ML+
Sbjct: 155 QTDAGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSDEGLIAVHIDEHEVHALVLMLR 214

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
            +        V       P    R     HE+L+
Sbjct: 215 EIFGEENELGVAVWDKRNPKGDARGVAYQHESLV 248



 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 70/205 (34%), Gaps = 15/205 (7%)

Query: 66  DAVTDSWDKFSSFEAYDAFTRA-----WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           DAV  S +   + +AY A+ +A             L P G ++ + S             
Sbjct: 279 DAVYRSGNPKDAQKAYRAWMKAQTNLSGGEVMYDRLSPEGRVYRLVS-MAWPNKKKAPDE 337

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
               +++ +  +        RG R   A    +      +               ++   
Sbjct: 338 YFTPLIHPVTGKP--CAMPARGWRNPPATMQALLERGQIEFGPDETTQPQRIYYLDENMY 395

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
            +   +   +GS+    K         KP    + ++   T+  DI+LD F GSG++G  
Sbjct: 396 ENVPSVLPFAGSDDALLKTLGIPFDLPKPVDFAAAVIGWCTRGDDIVLDCFAGSGSTGHA 455

Query: 241 AKKLR------RSFIGIEMKQDYID 259
             ++       R +I +++  + +D
Sbjct: 456 VMQVNATDGGARRYILVQL-PEALD 479


>gi|217032845|ref|ZP_03438324.1| hypothetical protein HPB128_165g4 [Helicobacter pylori B128]
 gi|298737008|ref|YP_003729538.1| adenine-specific DNA-methyltransferase [Helicobacter pylori B8]
 gi|216945428|gb|EEC24092.1| hypothetical protein HPB128_165g4 [Helicobacter pylori B128]
 gi|298356202|emb|CBI67074.1| adenine specific DNA methylase (Mod-related) [Helicobacter pylori
           B8]
          Length = 228

 Score = 60.0 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 81/205 (39%), Gaps = 23/205 (11%)

Query: 18  EWKDKIIKG-NSISVL-----EKLPAKSVDLIFADPPYNLQL-----NGQLYRPDHSLVD 66
           E ++ +I+  N+I++L     + L  K +DLI+ DPP+         NG+     +S   
Sbjct: 3   EMQNLLIQAENAIALLFLLNDKNLKGK-IDLIYIDPPFATNNHFTITNGRATTISNSKNG 61

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW-- 124
            +  S DK    + +  F +  L+  + +L   G+++V         +  ML  +     
Sbjct: 62  DIAYS-DKVVGMD-FIEFLKQRLVLLKELLSEQGSIYVHTDCKIGHYVKVMLDEIFGIQN 119

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP------SPKAKGYTFNYDALKAANEDV 178
             N+I   K NP  NF+   + N  + +++ S       +     YT      +    D 
Sbjct: 120 FRNEITRIKCNP-KNFKRMGYGNIKDMILFYSKGKNPIFNEPKIPYTPQDLEKRFPKIDK 178

Query: 179 QMRSDWLIPICSGSERLRNKDGEKL 203
             R    +PI +  E    +  + L
Sbjct: 179 DKRRYTTVPIHAPGEVESGECSKHL 203


>gi|300769877|ref|ZP_07079757.1| probable DNA modification methylase [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300763328|gb|EFK60144.1| probable DNA modification methylase [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 376

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           + T  P +   R+L   TK  D++ DPF G GT+   A+ L  +  GI+       +A  
Sbjct: 24  YFTMFPLSFPYRVLQK-TKKTDVVYDPFCGRGTTNFAARLLGLNSYGIDSNPIAHAVAQS 82

Query: 264 RIASV 268
           ++  V
Sbjct: 83  KLQYV 87


>gi|78356786|ref|YP_388235.1| adenine specific DNA methylase Mod-like [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78219191|gb|ABB38540.1| Adenine specific DNA methylase Mod-like protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 445

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 49/133 (36%), Gaps = 20/133 (15%)

Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
            A ++  +      D       G + + N  G+ +  T KP ALL R++   +K  DIIL
Sbjct: 169 YAHESNGQPTTNYWDNSPTNKEGKKEVLNIFGDNVFDTPKPTALLQRLIALVSKEEDIIL 228

Query: 229 DPFFGSGTSGAVA------KKLRRSFIG------IEMKQDYI--------DIATKRIASV 268
           D F GS  +          +K +R FI        +              ++  +RI  V
Sbjct: 229 DFFSGSCATAHAVMKGNVYEKTKRKFIMVQLPEPCDKNSSAFKSGFSTIAELGKERIRRV 288

Query: 269 QPLGNIELTVLTG 281
               + +    +G
Sbjct: 289 ISQLSEDNLSYSG 301


>gi|330467160|ref|YP_004404903.1| DNA methylase n-4/n-6 domain-containing protein [Verrucosispora
           maris AB-18-032]
 gi|328810131|gb|AEB44303.1| DNA methylase n-4/n-6 domain protein [Verrucosispora maris
           AB-18-032]
          Length = 247

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 27/46 (58%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           L +  + S T PGD++ DP  GSGT+   A  L R  +GI+++  +
Sbjct: 5   LAAHAISSYTAPGDLVFDPMCGSGTTLIEAMHLGRHGLGIDIEPRF 50



 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 9/105 (8%)

Query: 22  KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           ++  G++ ++L  +PA     V L+   PPY    +G +      +        D+    
Sbjct: 71  RVFTGDATTLLGVVPASTVGRVGLVLTSPPYGRGTHGLVQVTGSGVRKRNHLYGDRERGN 130

Query: 79  EAYDAFTR------AWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
            AY  ++R      A L A  ++L+P GT+ +        R   +
Sbjct: 131 LAYGGWSRLLDGFAAILAASYQLLRPGGTVVITCRPVRHHRDDLI 175


>gi|327188763|gb|EGE55959.1| Site-specific DNA-methyltransferase (adenine-specific) [Rhizobium
           etli CNPAF512]
          Length = 670

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 45/261 (17%), Positives = 88/261 (33%), Gaps = 26/261 (9%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN-------GQLYRPDHSLVDAVTD 70
           +  I+G+++ VL+ L       + LI+ DPPYN            +      +    + D
Sbjct: 100 NVFIEGDNLEVLKLLQKAYFGKIKLIYVDPPYNTGNEFIYPDKFSETLDTYLAYTGQIDD 159

Query: 71  SWDKFSSFEA--------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL- 121
           S  KFS+           +       L   + +L+ +G L++    H +  + ++   + 
Sbjct: 160 SGKKFSTNADTSGRYHSRWLNMMYPRLYLAKNLLREDGALFISIDDHEVMNLRSICDQIF 219

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETL-IWASPSPKAKGYTFNYDALKAANEDVQM 180
                   +   +N       +     HE L ++ +   ++ G    Y+ L       Q 
Sbjct: 220 GEENHIATISVLNNLKGRNDKKNVATCHEYLVVYGNERFESYGIPLTYEQLSEYKYKDQQ 279

Query: 181 RSDWLIPICSGSERLRNK-DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
            + + +           + D  KL+          R  +      DI + P  G GT G 
Sbjct: 280 GNAYALRDLRKRGGADKRTDRPKLYFPIYYNEATGRCALERKLASDIEILPQLGDGTDG- 338

Query: 240 VAKKLRRSFIGIEMK---QDY 257
              +  R  +G E+      Y
Sbjct: 339 -CWRWGREKVGKELDILHPKY 358



 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 67/207 (32%), Gaps = 25/207 (12%)

Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
            ++G        W    +        P +   + +   E  ++  P+ +A   T   D  
Sbjct: 330 PQLGDGTDGCWRWGREKVGKELDILHPKYNKSKDKWGVEHRVYLDPTIRADDDTEADDED 389

Query: 172 KAANEDVQMRSDWLI-PICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSSTKPGDIIL 228
                  + +S W    I +       KD  +   T  P+    + RI+  +TK  D+IL
Sbjct: 390 INFERTSKSKSFWWGADISTDHAVRVFKDLFEGMGTDYPKSPKFMKRIIQMATKSDDLIL 449

Query: 229 DPFFGSGTSGAVAKKL------RRSFIGI------EMKQDYID--------IATKRIASV 268
           D F G  T+     +L       R F+ +      E   +           ++  RI  V
Sbjct: 450 DFFAGFSTTAHATMELNYEEGTNRRFVMVQLPELAEPSSEAAKAGYKTISALSRDRIRRV 509

Query: 269 QP--LGNIELTVLTGKRTEPRVAFNLL 293
           +   L   E  +    R  P + F   
Sbjct: 510 RESILKRNEGELDLAARKTPDLGFRSF 536


>gi|170766114|ref|ZP_02900925.1| DNA methylase N-4/N-6 domain protein [Escherichia albertii TW07627]
 gi|170125260|gb|EDS94191.1| DNA methylase N-4/N-6 domain protein [Escherichia albertii TW07627]
          Length = 709

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 75/233 (32%), Gaps = 21/233 (9%)

Query: 21  DKIIKGNSISVLEKL---PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
             +I G +  VL+ L       VD+I+ DPPYN       Y  D+          D    
Sbjct: 138 HSVINGENYHVLKALTYTHRGKVDVIYIDPPYNSGAKDWKYNNDYV-------EGDDLYR 190

Query: 78  FEAYDAFTRAWLLACRRVLKP-NGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
              + A     L   + +L P +  L V        R+G +L+ +       ++    NP
Sbjct: 191 HSKWLAMMERRLEVAKLLLNPADSVLIVTIDEKEFLRLGLLLEQMFPEATIQMISSVINP 250

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER-- 194
             + R  RF    E + +                 + +     +R   L+    GS R  
Sbjct: 251 KGSARTGRFSRVDEYIYYVFFGDAKVVPWRTDMLREVSENGRNVRWAGLMRNGEGSRRSR 310

Query: 195 --------LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
                     +K+    H T +P  L  +        G + + P  G+G    
Sbjct: 311 IPSMFFPIFIDKETGDYHSTGEPPPLDMKPSDVPVPEGTVAIFPIDGNGQELM 363



 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 12/98 (12%)

Query: 202 KLHPTQKPEALLSRILV--SSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
           +  P  K    +   L    S K   +++D F GSGT+     +L       R  I I  
Sbjct: 460 RRFPYPKSLYAVEDCLRFVLSKKENAVVVDFFSGSGTTAHAVMRLNRQDGGRRQCISITN 519

Query: 254 KQDYIDIATK-RIASVQPLGNIELTVLT--GKRTEPRV 288
            +   D   K R   ++P G+ E          T+PRV
Sbjct: 520 NEVSADEQKKLREQGLRP-GDPEWEKWGICDYITKPRV 556


>gi|300088689|ref|YP_003759211.1| adenine-specific DNA-methyltransferase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299528422|gb|ADJ26890.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 632

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 61/181 (33%), Gaps = 18/181 (9%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG----------QLYRPDHSLVDA 67
           + II+G+++ VL+ L       V +I+ DPPYN   +           Q Y      VDA
Sbjct: 94  NLIIEGDNLEVLKLLQKSYLGKVKMIYIDPPYNTGNDFIYPDNYTESLQTYLEYTGQVDA 153

Query: 68  VTDSWDKFSSFE-----AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
               +   +  +      +       L   R +L+ +G +++      +  +  +   + 
Sbjct: 154 EGRKFGNNNDTDGRFHSKWMNMMYPRLYLARNLLRADGVIFISVDDTEVDNLKKICNEVF 213

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
                       +     + +     HE +++ + +       +     +  N   + + 
Sbjct: 214 GEDNFLTQIVWKSRYNAAKEKHLAQVHEYILFYARNKDEIESIYLPTNEEYLNRYFKNQD 273

Query: 183 D 183
           +
Sbjct: 274 E 274



 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 24/110 (21%)

Query: 202 KLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGI--- 251
           K  P  KP AL++ ++ ++  K  D+ILD F GSGT+      L       R F+ I   
Sbjct: 387 KYFPFPKPTALITHLINIAGVKNDDLILDFFPGSGTTAHAIIALNRQDGNKRKFLLIQLP 446

Query: 252 ---EMKQDYI--------DIATKRIASVQPLGNIELT---VLTGKRTEPR 287
              + + +          +I  +R+  V    N +      L G R + R
Sbjct: 447 EPCDKETEAFQSGCSTIVEITKERVRRVIKKLNDQDAGKLDLDGGRKQDR 496


>gi|167585031|ref|ZP_02377419.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia ubonensis Bu]
          Length = 672

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 59/166 (35%), Gaps = 21/166 (12%)

Query: 17  FEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLN---------------GQLY 58
            + +  +I+G+++ V++ L    A  V L++ DPPYN   +                   
Sbjct: 99  DDTRHLVIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTGSDFVYPDDFSDSLRHYLAVTG 158

Query: 59  RPDHSLV-DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
           + D  +     T++  +F +   +       L     +L   G + V    H +  +  M
Sbjct: 159 QTDGGVKRSTNTEANGRFHT--DWLNMMYPRLKLAHALLSDAGLIAVHIDEHEVHALVLM 216

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
           L+ +        V       P    R     HE+L+  + + +A  
Sbjct: 217 LREIFGEENELGVAVWDKRNPKGDARGVAYQHESLVLFARNAEALH 262



 Score = 43.4 bits (101), Expect = 0.051,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 6/53 (11%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
            KP    + ++   T+  DI++D F GSG++G    +L       R ++ +++
Sbjct: 426 PKPVDFAAAVIGWCTRGDDIVVDCFAGSGSTGHAVMQLNATDGGARRYVLVQL 478


>gi|292493358|ref|YP_003528797.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nitrosococcus halophilus Nc4]
 gi|291581953|gb|ADE16410.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nitrosococcus halophilus Nc4]
          Length = 650

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 68/164 (41%), Gaps = 24/164 (14%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + II+G+++ VL+ L A   + V  I+ DPPYN   N  +Y  D+   +  T  W +  +
Sbjct: 101 NLIIEGDNLEVLKLLQATYFERVKCIYIDPPYNTG-NDFIYPDDYR--ETKTAYWKRSGA 157

Query: 78  FEA-----------------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
            +                  +    ++ LL  R++L+ +G +++    + +  +  +  +
Sbjct: 158 IKDGVRLTAVTEASGRRHSNWLNMMQSRLLLARQLLRDDGIIFISIDDNEVAHLKLLASD 217

Query: 121 L-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
           +         V    NP    + +   N HE L+  S SP   G
Sbjct: 218 IFGAENFIGQVTVLCNPKGRSQDKYLANCHEFLLIYSKSPLENG 261



 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 49/139 (35%), Gaps = 14/139 (10%)

Query: 127 NDIVWRKSNPM---PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
            +I     +       +   R +   + ++    S + K +   Y A        +++S 
Sbjct: 326 EEIYPNWDDGFEGCWTWGKDRARQDLDKIVARKVSGRWKIFRKAYAAEPGNAPVKKLKSI 385

Query: 184 WLIPICSGSERLRN-----KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
           W        +         +  EK+  + K   L++  +  +T    I++D F GSGT+ 
Sbjct: 386 WSDKKYHTEKGQTEFNRLFEKKEKIFQSPKSVDLIADAIRMATDEESIVMDFFAGSGTTA 445

Query: 239 AVAKKLR------RSFIGI 251
               ++       R FI +
Sbjct: 446 HAVFQVNAEDGKKRKFILV 464


>gi|309811426|ref|ZP_07705213.1| DNA (cytosine-5-)-methyltransferase [Dermacoccus sp. Ellin185]
 gi|308434733|gb|EFP58578.1| DNA (cytosine-5-)-methyltransferase [Dermacoccus sp. Ellin185]
          Length = 643

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 57/155 (36%), Gaps = 22/155 (14%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYN----------------- 50
           EN       ++  I+G+++ VL+ L       + LI+ DPPYN                 
Sbjct: 83  ENSKDWDTTQNVFIEGDNLEVLKILQKHYHAKIKLIYIDPPYNTGKDFVYPDNYREGLQT 142

Query: 51  -LQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
            L+  G +     +   +  ++ D      A+       L   R +LK +G +++    +
Sbjct: 143 YLEYTGLVGDDGKAKSTSARNTSDNPHYHSAWLNMMYPRLKLARNLLKDDGVIFISIDDN 202

Query: 110 NIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGR 143
            +  +  +L  +       +    +SN  P+   R
Sbjct: 203 EVANLRRVLDEVFGEANFIENYIWESNFRPDNSSR 237



 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 22/107 (20%)

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST--KPGDIILDPFFGSGTSG 238
             D +  + +G+  +R   G+ +    KP  LL  ++ S T      I+LD F GS ++ 
Sbjct: 373 PRDQVGDVLAGNAEIRGLFGDAVFNHPKPTTLLKYLINSVTSDDSDAIVLDFFAGSASTA 432

Query: 239 AVAKKLR------RSFIGIEM-----------KQDY---IDIATKRI 265
                L       R F+ +++            + Y    ++A KRI
Sbjct: 433 HAVLALNASDNGRRHFVAVQLPEPTPEGSIAASKGYATIAELARKRI 479


>gi|110678416|ref|YP_681423.1| modification methylase, putative [Roseobacter denitrificans OCh
          114]
 gi|109454532|gb|ABG30737.1| modification methylase, putative [Roseobacter denitrificans OCh
          114]
          Length = 97

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 7/67 (10%)

Query: 21 DKIIKGNSISVLE-KLPAKSVDLIFADPP------YNLQLNGQLYRPDHSLVDAVTDSWD 73
          + +  G++++VL   +  +SVDLI+ DPP      YN+   G       + ++A  D+W 
Sbjct: 3  NHLYYGDNLAVLRDSIADESVDLIYVDPPFNSNASYNVLFKGPSGNSSAAQIEAFDDTWS 62

Query: 74 KFSSFEA 80
               EA
Sbjct: 63 WGDEAEA 69


>gi|227548168|ref|ZP_03978217.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079729|gb|EEI17692.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Corynebacterium lipophiloflavum DSM 44291]
          Length = 215

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 17/121 (14%)

Query: 18  EWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHS-----LVDAVT 69
           E ++  I G+++  L+ L       V  I+ DPPYN   +G +Y  D S     LV+ V 
Sbjct: 93  ESENLYIVGDNLDALKHLLGSYAGKVKCIYIDPPYNTGSDGFVYIDDFSFTAKDLVEKVG 152

Query: 70  DSWDKF---------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
              D+          SS  A+  F    L   + +L  +G +++    +    +  +   
Sbjct: 153 LDEDEAERVIALQGKSSHSAWLTFMYPRLELAKELLADDGVIFISIDDNEQANLRNLCDE 212

Query: 121 L 121
           +
Sbjct: 213 V 213


>gi|206561831|ref|YP_002232596.1| type III restriction-modification system methylase [Burkholderia
           cenocepacia J2315]
 gi|198037873|emb|CAR53817.1| type III restriction-modification system methylase [Burkholderia
           cenocepacia J2315]
          Length = 668

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 52/154 (33%), Gaps = 17/154 (11%)

Query: 17  FEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNG--------------QLYR 59
            + +  +I+G+++ V++ L    A  V L++ DPPYN   +                +  
Sbjct: 95  DDTRHLVIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTGSDFVYPDDFSDSIRHYLAMTG 154

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
              + V   T++         +       L     +L   G + V    H +  +  ML+
Sbjct: 155 QTEAGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSDEGLIAVHIDEHEVHALVLMLR 214

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
            +        V       P    R     HE+L+
Sbjct: 215 EIFGEENELGVAVWDKRNPKGDARGVAYQHESLV 248



 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 70/205 (34%), Gaps = 15/205 (7%)

Query: 66  DAVTDSWDKFSSFEAYDAFTRA-----WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           DAV  S +   + +AY A+ +A             L   G ++ + S           + 
Sbjct: 279 DAVYRSGNPKDAQKAYRAWMKAQTNLSGGEVMYDRLSAEGRVYRLVS-MAWPNKKKAPEE 337

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
               +++ +  +        RG R   A    +      +               ++   
Sbjct: 338 YFTPLIHPVTGKP--CAMPARGWRNPPATMQALLERGQIEFGPDETTQPQRIYYLDENMY 395

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
            +   +   +GS+    K         KP    + ++   T+  DI+LD F GSG++G  
Sbjct: 396 ENVPSVLPFAGSDDALLKTLGIPFDLPKPVDFAAAVIGWCTRGDDIVLDCFAGSGSTGHA 455

Query: 241 AKKLR------RSFIGIEMKQDYID 259
             ++       R +I +++  + +D
Sbjct: 456 VMQVNATDGGARRYILVQL-PEALD 479


>gi|150398910|ref|YP_001322677.1| adenine-specific DNA-methyltransferase [Methanococcus vannielii SB]
 gi|150011613|gb|ABR54065.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methanococcus vannielii SB]
          Length = 646

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 59/154 (38%), Gaps = 20/154 (12%)

Query: 24  IKGNSISVLEKLP---AKSVDLIFADPPYNLQLN----------GQLYRPDHSLVDAVTD 70
           I+G+++ VL+ L    + S+  I+ DPPYN   +           + Y  +   +D   +
Sbjct: 102 IEGDNLEVLKILRKSYSNSIKCIYIDPPYNTGKDFVYKDNFSMSKEDYEAEAGAIDEEGN 161

Query: 71  SWDKFSSFE-----AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--F 123
              K +  +      +       L    ++LK +G +++    + +  +  +   +    
Sbjct: 162 RLIKNTGTDGRFHSNWLNMMYPRLQLAYKLLKKDGVIFISIDDNEVDNLKKVCNEIFGEN 221

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
             +  +VW       +   + F+  HE ++  + 
Sbjct: 222 NFIAQLVWENKEGGGSSDSKFFRIKHEYILVYTK 255



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 58/194 (29%), Gaps = 39/194 (20%)

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK-DGEKLHPTQKPEALLSRI 216
               K Y             V  R        + + +   K  G+K+    KP  L+  +
Sbjct: 352 WVYTKQYFKLDHNGNPITRSVPHRGVIAKYSSTQATKQMEKIFGKKMFDYSKPYDLIQFL 411

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQD-----------Y-- 257
            + +T   D ILD F GS T+     +L       R FI +++ ++           Y  
Sbjct: 412 GLLATDKDDTILDFFSGSATTAHAVMQLNAEDNGSRKFIMVQLPEEVEEGTEAFKAGYKN 471

Query: 258 -IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL----LVERGLIQPGQILTNAQG-- 310
             +I  +RI         E       +    V F      L E  +        + +   
Sbjct: 472 ICEIGKERIRRAAKKIQEE----NSDKDLSNVDFGFRVFKLDESNM---KDTYYSPEKIT 524

Query: 311 -----NISATVCAD 319
                N   T+  D
Sbjct: 525 QTTLINFKDTIKED 538


>gi|254246629|ref|ZP_04939950.1| Adenine specific DNA methylase Mod [Burkholderia cenocepacia PC184]
 gi|124871405|gb|EAY63121.1| Adenine specific DNA methylase Mod [Burkholderia cenocepacia PC184]
          Length = 672

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 52/154 (33%), Gaps = 17/154 (11%)

Query: 17  FEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNG--------------QLYR 59
            + +  +I+G+++ V++ L    A  V L++ DPPYN   +                +  
Sbjct: 99  DDTRHLVIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTGSDFVYPDDFSDSIRHYLAMTG 158

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
              + V   T++         +       L     +L   G + V    H +  +  ML+
Sbjct: 159 QTEAGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSDEGLIAVHIDEHEVHALVLMLR 218

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
            +        V       P    R     HE+L+
Sbjct: 219 EIFGEENELGVAVWDKRNPKGDARGVAYQHESLV 252



 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 70/205 (34%), Gaps = 15/205 (7%)

Query: 66  DAVTDSWDKFSSFEAYDAFTRA-----WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           DAV  S +   + +AY A+ +A             L P G ++ + S             
Sbjct: 283 DAVYRSGNPKDAQKAYRAWMKAQTNLSGGEVMYDRLSPEGRVYRLVS-MAWPNKKKAPDE 341

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
               +++ +  +        RG R   A    +      +               ++   
Sbjct: 342 YFTPLIHPVTGKP--CAMPARGWRNPPATMQALLERGQIEFGPDETTQPQRIYYLDENMY 399

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
            +   +   +GS+    K         KP    + ++   T+  DI+LD F GSG++G  
Sbjct: 400 ENVPSVLPFAGSDDALLKTLGIPFDLPKPVDFAAAVIGWCTRGDDIVLDCFAGSGSTGHA 459

Query: 241 AKKLR------RSFIGIEMKQDYID 259
             ++       R +I +++  + +D
Sbjct: 460 VMQVNATDGGARRYILVQL-PEALD 483


>gi|107021604|ref|YP_619931.1| site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia cenocepacia AU 1054]
 gi|116688052|ref|YP_833675.1| site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia cenocepacia HI2424]
 gi|105891793|gb|ABF74958.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia cenocepacia AU 1054]
 gi|116646141|gb|ABK06782.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia cenocepacia HI2424]
          Length = 672

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 52/154 (33%), Gaps = 17/154 (11%)

Query: 17  FEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNG--------------QLYR 59
            + +  +I+G+++ V++ L    A  V L++ DPPYN   +                +  
Sbjct: 99  DDTRHLVIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTGSDFVYPDDFSDSIRHYLAMTG 158

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
              + V   T++         +       L     +L   G + V    H +  +  ML+
Sbjct: 159 QTEAGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSDEGLIAVHIDEHEVHALVLMLR 218

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
            +        V       P    R     HE+L+
Sbjct: 219 EIFGEENELGVAVWDKRNPKGDARGVAYQHESLV 252



 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 70/205 (34%), Gaps = 15/205 (7%)

Query: 66  DAVTDSWDKFSSFEAYDAFTRA-----WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           DAV  S +   + +AY A+ +A             L P G ++ + S             
Sbjct: 283 DAVYRSGNPKDAQKAYRAWMKAQTNLSGGEVMYDRLSPEGRVYRLVS-MAWPNKKKAPDE 341

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
               +++ +  +        RG R   A    +      +               ++   
Sbjct: 342 YFTPLIHPVTGKP--CAMPARGWRNPPATMQALLERGQIEFGPDETTQPQRIYYLDENMY 399

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
            +   +   +GS+    K         KP    + ++   T+  DI+LD F GSG++G  
Sbjct: 400 ENVPSVLPFAGSDDALLKTLGIPFDLPKPVDFAAAVIGWCTRGDDIVLDCFAGSGSTGHA 459

Query: 241 AKKLR------RSFIGIEMKQDYID 259
             ++       R +I +++  + +D
Sbjct: 460 VMQVNATDGGARRYILVQL-PEALD 483


>gi|319795057|ref|YP_004156697.1| DNA methylase n-4/n-6 domain protein [Variovorax paradoxus EPS]
 gi|315597520|gb|ADU38586.1| DNA methylase N-4/N-6 domain protein [Variovorax paradoxus EPS]
          Length = 346

 Score = 59.6 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 28/57 (49%)

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
              +   +   ++PGD + DPF G GT+   A+   R   G E+  D I +  +R+A
Sbjct: 36  IEQMLPFVRQFSQPGDTVFDPFAGFGTTLLAARLEGRLASGCEVDADRIGLIRERLA 92


>gi|32266537|ref|NP_860569.1| type II R/M system [Helicobacter hepaticus ATCC 51449]
 gi|32262588|gb|AAP77635.1| type II R/M system [Helicobacter hepaticus ATCC 51449]
          Length = 411

 Score = 59.6 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 189 CSGSERLRNKDGEKLHP-----TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
            +  ++   +D  K+H         P  L    +   ++ GD++ DPF G GT+   A +
Sbjct: 13  TNDYKQYFCRDFSKIHQITAYLAMFPPNLPYHFIKKYSQKGDLVFDPFSGRGTTAFEACR 72

Query: 244 LRRSFIGIEMKQDYIDIATKRI 265
           + R  IG ++    + +   +I
Sbjct: 73  MGRKGIGNDLNPLAVCLTKSKI 94



 Score = 39.6 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 17/86 (19%)

Query: 37  AKSVDLIFADPPYNLQLNGQLYRPDH--------SLVDAVTDSWDKFS---------SFE 79
             SV LI   PPY   +N   Y              VD     +             +FE
Sbjct: 260 ENSVQLIITSPPYLKNINYGKYNWIRLWLLNKEVKEVDKNVSIYHNMQKIKGLKDNLAFE 319

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVI 105
            Y  + +    +  ++LKP    +V+
Sbjct: 320 NYAKYMQELFKSWEKILKPKSYAFVV 345


>gi|295987478|ref|YP_003620423.1| hypothetical protein LKI_10371 [Leuconostoc kimchii IMSNU 11154]
 gi|295831568|gb|ADG39454.1| hypothetical protein LKI_10371 [Leuconostoc kimchii IMSNU 11154]
          Length = 619

 Score = 59.6 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 55/163 (33%), Gaps = 22/163 (13%)

Query: 17  FEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
            + ++  I G+++  L+ L       +D+I+ DPPYN   +  +Y+ +        D  +
Sbjct: 73  EKSENLFITGDNLEALKLLQESYLGKIDMIYIDPPYNTGKD-FVYQDNFKKTQKENDLSE 131

Query: 74  KFSSFE----------------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
                E                 +       L   R +L   G ++V    +    +  +
Sbjct: 132 GIIDEEGNRLVKNEKSNGRYHSDWLTMMYPRLKLARNLLSDTGVIFVSIDDNEQANLKLL 191

Query: 118 LQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
           +  +      +N   W       + + +  ++  E +   + +
Sbjct: 192 MDEIFGEDNFVNRFTWVNKKEGRSLKSKGAKSTSELIYAYAKN 234



 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/250 (16%), Positives = 82/250 (32%), Gaps = 34/250 (13%)

Query: 105 IGSYHNIFRIGTMLQNLNFWILNDIV-WRKSNPMPNFRGRRF-----QNAHETLIWASPS 158
              ++       + +N        I   + S+    +   R+     +N  + L++   +
Sbjct: 294 FNIWYREEDKSVVFENPYSQSYVLITPHKNSDGRHKYHAYRWSQEKIKNEIDDLLFVKYN 353

Query: 159 PKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILV 218
              K +T   +      +D+       IP   G+ R   K G       KP +L+  ++ 
Sbjct: 354 DTYKIFTKRREFANTVIKDLIT----DIPTNQGT-RDLRKLGINEFDFPKPVSLIKFLIQ 408

Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQ------DYI---DIATK 263
            S++    ILD F GSGT+      +       R++I I + +       Y     I+ +
Sbjct: 409 ISSQYNSTILDFFAGSGTTAESVMAINQQDQGSRNYILITLDELLDQENKYTTIDQISRE 468

Query: 264 RIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN--------ISAT 315
           RI       +        K     +  ++    G +    +L +   +        +   
Sbjct: 469 RIRRAAKKISDTSGFRALKVDSTGLKEDVFKTAGELDQVDLLQDIDNHSDNRSDYDLLYD 528

Query: 316 VCADGTLISG 325
           V  DG L   
Sbjct: 529 VLVDGALEYN 538


>gi|296136461|ref|YP_003643703.1| Site-specific DNA-methyltransferase (adenine-specific) [Thiomonas
           intermedia K12]
 gi|295796583|gb|ADG31373.1| Site-specific DNA-methyltransferase (adenine-specific) [Thiomonas
           intermedia K12]
          Length = 1138

 Score = 59.6 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 3/87 (3%)

Query: 185 LIPICSGSERLRNKDGE-KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           ++    G + L N  G     P  KP  L+ R +  +T+P D ++D F GSGT G     
Sbjct: 863 VLDYTDGEKELTNLTGSPNSFPNPKPTTLIGRFIEQTTEPKDWVMDFFAGSGTCGHAVLA 922

Query: 244 LR--RSFIGIEMKQDYIDIATKRIASV 268
           L   R F+  EM   +  +   RIA +
Sbjct: 923 LEQPRRFVLTEMGGYWDTVTKPRIARL 949



 Score = 42.3 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 44/134 (32%), Gaps = 19/134 (14%)

Query: 23  IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +I   +   L  L     + +  I+ DPPYN   +G LY+             D F    
Sbjct: 537 LIHSENWQALNLLQEKFRERIQCIYIDPPYNTGGDGFLYK-------------DSFRH-S 582

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNPMP 138
           ++ A     L   + +L  +G L+          +  +L +        + +    N   
Sbjct: 583 SWAAMMADRLALAKPLLGTHGVLFASIDDKERLSLERLLADTFGAENRVEELIWAQNTTK 642

Query: 139 NFRGRRFQNAHETL 152
           N       N HE +
Sbjct: 643 NQSPTYSTN-HEYV 655


>gi|188527067|ref|YP_001909754.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
           pylori Shi470]
 gi|188143307|gb|ACD47724.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
           pylori Shi470]
          Length = 390

 Score = 59.6 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 53/140 (37%), Gaps = 17/140 (12%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
             K+    ++  L+++  +S+  I+ DPPYN + +   Y   H+                
Sbjct: 1   MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYEDAHA---------------- 44

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y+ + +  L+  + VLK +G +++    + +  +  +   +     N +    +     
Sbjct: 45  DYEKWIKEHLILAKAVLKQSGCIFISIDDNKMAEVKIIANEIFGT-RNFLGTFITKQATR 103

Query: 140 FRGRRFQNAHETLIWASPSP 159
              +     HE ++  + + 
Sbjct: 104 SNAKHINITHEYVLSYAKNK 123



 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 11/107 (10%)

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           L + +         +    LK + ++     D+      G++ L     + L  T KP A
Sbjct: 235 LYYQNRLIFKNNRPYEKYYLKESQDNCLSVLDFY--SRQGTKDLEKLGLKGLFKTPKPVA 292

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           L+  +L+ ST    IILD F GSGT+             IE+ +DY 
Sbjct: 293 LIKYLLLCSTPKDSIILDFFAGSGTTAQAV---------IEVNKDYY 330


>gi|154492435|ref|ZP_02032061.1| hypothetical protein PARMER_02069 [Parabacteroides merdae ATCC
           43184]
 gi|154087660|gb|EDN86705.1| hypothetical protein PARMER_02069 [Parabacteroides merdae ATCC
           43184]
          Length = 835

 Score = 59.6 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 3/86 (3%)

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKL---HPTQKPEALLSRILVSSTKPGDIILDPFFG 233
           D   + DW+    +    L  K  +K    H       ++ R++   +  G+++ DPF G
Sbjct: 726 DPVSKKDWIWDDVARMRTLNTKQSQKKRQNHICPLQLDIVERLIERYSNKGELVFDPFGG 785

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYID 259
            GT    A KL R  +  E+  DY  
Sbjct: 786 IGTVPYCAIKLGRRGLSTELNYDYWK 811



 Score = 42.7 bits (99), Expect = 0.093,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 10/91 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K I  +++   +K+ + SVDLI    P++          D        +  DKF     Y
Sbjct: 478 KAINNDNVLECQKMESNSVDLIVTSIPFSNHYEYTPTYNDF----GHNEDNDKFFEQMDY 533

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
                       R+LKP     +      +F
Sbjct: 534 LT------PELMRILKPGRLACIHVKDRVLF 558


>gi|308063122|gb|ADO05009.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
           pylori Sat464]
          Length = 390

 Score = 59.6 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 53/140 (37%), Gaps = 17/140 (12%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
             K+    ++  L+++  +S+  I+ DPPYN + +   Y   H+                
Sbjct: 1   MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYEDAHA---------------- 44

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y+ + +  L+  + VLK +G +++    + +  +  +   +     N +    +     
Sbjct: 45  DYEKWIKEHLILAKAVLKQSGCIFISIDDNKMAEVKIIANEIFGT-RNFLGTFITKQATR 103

Query: 140 FRGRRFQNAHETLIWASPSP 159
              +     HE ++  + + 
Sbjct: 104 SNAKHINITHEYVLSYAKNK 123



 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 11/107 (10%)

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           L + +         +    LK + ++     D+      G++ L     + L  T KP A
Sbjct: 235 LYYQNRLIFKNNRPYEKYYLKESQDNCLSVLDFY--SRQGTKDLEKLGLKGLFKTPKPVA 292

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           L+  +L+ ST    IILD F GSGT+             IE+ +DY 
Sbjct: 293 LIKYLLLCSTPKDSIILDFFAGSGTTAQAV---------IEVNKDYY 330


>gi|237716188|ref|ZP_04546669.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides sp.
           D1]
 gi|262407797|ref|ZP_06084345.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides sp.
           2_1_22]
 gi|294644813|ref|ZP_06722556.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CC 2a]
 gi|229443835|gb|EEO49626.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides sp.
           D1]
 gi|262354605|gb|EEZ03697.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides sp.
           2_1_22]
 gi|292639846|gb|EFF58121.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CC 2a]
          Length = 839

 Score = 59.6 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 3/96 (3%)

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKL---HPTQKPEALLSRILVSSTKPGDIILDPFFG 233
           D   +  W+    +    L  K  +K    H       ++ R++   +  GD++ DPF G
Sbjct: 729 DPVSKKPWIWDDVTRMRTLNTKQSQKKRQNHICPLQLDIVERLIERYSNKGDLVFDPFGG 788

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            GT    A +L R  +  E+  DY   +   +   +
Sbjct: 789 IGTVPYCAIRLGRKGLSTELNYDYWKDSLSYLHEAE 824



 Score = 41.9 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 10/91 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K I  +++   +K+ + SVDL+    P++          D        +S DKF     Y
Sbjct: 481 KAINNDNVLECQKMESNSVDLVVTSIPFSNHYEYTPTYNDF----GHNESNDKFFEQMDY 536

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
                       R+LKP     +      +F
Sbjct: 537 LT------PELMRILKPGRLACIHVKDRVLF 561


>gi|317180065|dbj|BAJ57851.1| Type II DNA modification enzyme [Helicobacter pylori F32]
          Length = 390

 Score = 59.6 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 53/140 (37%), Gaps = 17/140 (12%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
             K+    ++  L+++  +S+  I+ DPPYN + +   Y   H+                
Sbjct: 1   MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYEDAHA---------------- 44

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y+ + +  L+  + VLK +G +++    + +  +  +   +     N +    +     
Sbjct: 45  DYEKWIKEHLILAKAVLKQSGCIFISIDDNKMAEVKIIANEIFGT-RNFLGTFITKQATR 103

Query: 140 FRGRRFQNAHETLIWASPSP 159
              +     HE ++  + + 
Sbjct: 104 SNAKHINITHEYVLSYAKNK 123



 Score = 53.1 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 44/114 (38%), Gaps = 18/114 (15%)

Query: 154 WASPSPKAKGYTFNY----DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-----H 204
           W+S       Y  N     +        ++   D  + +     R   KD EKL      
Sbjct: 226 WSSDEKLKDLYHQNRLIFKNNRPYEKYYLKESQDNCLSVLDFYSRQGTKDLEKLGLKGLF 285

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            T KP AL+  +L+ ST    IILD F GSGT+             IE+ +DY 
Sbjct: 286 KTPKPVALIKYLLLCSTPKDSIILDFFAGSGTTAQAV---------IEVNKDYY 330


>gi|329766161|ref|ZP_08257720.1| putative RNA methylase [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329137432|gb|EGG41709.1| putative RNA methylase [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 315

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 1/84 (1%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKK 243
                   E+       K HP +    L   ++ +   K G+++ DPF G+GT+   A+ 
Sbjct: 139 FFGFSKRFEKQNRPIKIKKHPHELDWKLTRSMINLIGLKEGEVVCDPFCGTGTTLLEAES 198

Query: 244 LRRSFIGIEMKQDYIDIATKRIAS 267
           +    IG++  +    I+ + + +
Sbjct: 199 MGIHAIGLDFDEKMFKISKENLDA 222


>gi|328952343|ref|YP_004369677.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
           11109]
 gi|328452667|gb|AEB08496.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
           11109]
          Length = 424

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 32/84 (38%)

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
             ++    +  +R  +   E  +       L    +   T+ G+++ DPF G GT+   A
Sbjct: 50  PVYINEFWTAKQRAAHSLHEISYRACFKPQLPRFFIERLTRLGEVVYDPFMGRGTTLIEA 109

Query: 242 KKLRRSFIGIEMKQDYIDIATKRI 265
               R  IG ++      +   R+
Sbjct: 110 ALWGRVPIGCDINPLSEILIRPRL 133



 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 5/74 (6%)

Query: 33  EKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
             +P ++V L+   PP+    N Q +  L    + L  +    W      E +    +  
Sbjct: 284 PAIPDQTVSLVVTSPPFLDIVNYQTDNWLRCWFNGLDASQVRIWQVKRPLE-WQERMQQV 342

Query: 89  LLACRRVLKPNGTL 102
                RVLKP G +
Sbjct: 343 FAELNRVLKPGGHV 356


>gi|261365259|ref|ZP_05978142.1| type III restriction-modification system StyLTI enzyme mod
           [Neisseria mucosa ATCC 25996]
 gi|288566347|gb|EFC87907.1| type III restriction-modification system StyLTI enzyme mod
           [Neisseria mucosa ATCC 25996]
          Length = 655

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIE 252
           + +    T KP  LL ++L   + P D+ILD F GSGT+     +L       R FI ++
Sbjct: 417 NSKAPFDTPKPTTLLLQMLKIGSNPNDLILDFFSGSGTTAHAVMQLNAEDGGSRRFICVQ 476

Query: 253 MKQDYIDIATKR 264
           + ++  + +  R
Sbjct: 477 LPEETDEKSEAR 488



 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 62/169 (36%), Gaps = 33/169 (19%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLY-------RPDHSLVDAVT 69
           ++  I+  ++  L+ L    A SV +I+ DPPYN   +  +Y       R +++     T
Sbjct: 121 QNVFIEAENLEALKILQKSYAGSVKMIYIDPPYNTGSDSFIYPDKFSESREEYARRVGDT 180

Query: 70  DS-------------W-----DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
           D              W     D       + +     L   + +L+ +G +++    +  
Sbjct: 181 DDAGYLKRDGVFQGAWRKNGKDSGHYHSNWLSMMLPRLHLAKTLLREDGVIFISIDDNEQ 240

Query: 112 FRIGTMLQNLN---FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
            ++  +   +     ++ N I  +K     + +G  F   H+ +I    
Sbjct: 241 AQLKLLCDEVFGAENFLANLIWQKKYAATNDAKG--FSTLHDYIIVYQK 287


>gi|330892364|gb|EGH25025.1| site-specific DNA-methyltransferase (adenine-specific) [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 264

 Score = 59.2 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 63/160 (39%), Gaps = 26/160 (16%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYN------------------LQLNGQLY 58
           K+  I+G+++ VL+ L    A  V +IF DPPYN                  LQ  GQ  
Sbjct: 98  KNLFIEGDNLEVLKLLQKSYAGKVKMIFIDPPYNTGNEFIYPDNFQDNLDTYLQYTGQK- 156

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
             D   V + T+   +F +   +       L   + +L+ +G +++        R+  + 
Sbjct: 157 DSDGLKVSSNTEGSGRFHTN--WLNMMYPRLKLSKSLLQNDGAIFISIDDSEAPRLRMLC 214

Query: 119 QNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
             +      + +I+W+ S     + G    + +  L++  
Sbjct: 215 DEVFGEENFITNIIWQHSVQPKGYSGIFSVHHNHILMYRK 254


>gi|295091228|emb|CBK77335.1| Adenine specific DNA methylase Mod [Clostridium cf. saccharolyticum
           K10]
          Length = 657

 Score = 59.2 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 79/237 (33%), Gaps = 46/237 (19%)

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            YD+   +  L    +     T++   SY          +        D  WR S  + +
Sbjct: 295 DYDSLQYSASLD-YPITINGETIYPGQSYEKYLE-----RKSGKHSRADWAWRWSKELFD 348

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL-----IPICSGSER 194
           F       A+  ++       ++ YT  Y   +      +   +++     I      E 
Sbjct: 349 FG-----YANGFIVVKKYENYSRIYTKTYQNARIVKNGTKFSIEYMNRTKAISTLEFVEN 403

Query: 195 LRNKDGEKLHPTQ----------KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
             + D  K H TQ          KP +LL  ++  STK GD ILD F GS T+     +L
Sbjct: 404 EFSNDNSKKHLTQLFDSNVFDYSKPTSLLKALVQYSTKEGDTILDFFSGSATTAHAVMQL 463

Query: 245 R------RSFIGIEM-------KQDY-------IDIATKRIASVQPLGNIELTVLTG 281
                  R FI +++        + Y        +I  +RI         +  + T 
Sbjct: 464 NAEDVGHRKFIMVQLPEKTDKKSEAYKAGYKNICEIGKERIRRAGKKIKEDSPLTTQ 520



 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 80/231 (34%), Gaps = 35/231 (15%)

Query: 17  FEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN------------------G 55
           F+ ++  I+G+++ VL+ L       + +I+ DPPYN   +                  G
Sbjct: 101 FDSENLYIEGDNLEVLKLLQETYLDKIKMIYIDPPYNTGNDFVYEDDFAQSTEEYMANSG 160

Query: 56  QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
           Q     + LV   T+S  +F +   +       L   + +L  +G +++    + +  + 
Sbjct: 161 QFNEEGNRLVQ-NTESNGRFHT--DWLNMIHPRLRFAKDLLSDDGVIFISIDDNEVSNML 217

Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY----------- 164
            +   +         + +               H+ ++  S S   + Y           
Sbjct: 218 NVCNEVFGENHFMACFPRVTKKAGKTTEAIAKNHDYILAYSKSDSPRLYLPSHTDSGFKF 277

Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
           +  Y+A +   +  Q      +   +  +     +GE ++P Q  E  L R
Sbjct: 278 SDEYEAERGKYKLNQTLDYDSLQYSASLDYPITINGETIYPGQSYEKYLER 328


>gi|315269866|gb|ADT96718.1| Site-specific DNA-methyltransferase (adenine-specific) [Shewanella
           baltica OS678]
          Length = 631

 Score = 59.2 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 56/144 (38%), Gaps = 22/144 (15%)

Query: 20  KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQ----LNGQLYRP------------ 60
           K+  I+G+++ VL+ L     K V +I+ DPPYN           Y              
Sbjct: 101 KNLFIEGDNLEVLKLLQKSYHKQVKMIYIDPPYNTGKDFVYKDNFYDNIQNYLVQTGQVD 160

Query: 61  -DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
            + + + A +D+  +F S  ++       L   R +L+ +G +++    + +  +  +  
Sbjct: 161 GEGNKLSANSDTSGRFHS--SWLNMIYPRLKLARNLLRDDGVIFISIDDNELANLLEVCD 218

Query: 120 NLNFWILNDIVWRKSNPMPNFRGR 143
            +        +  +    P+ +G 
Sbjct: 219 EIFGSDNRRGIVSRPTGTPSGQGY 242



 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 6/58 (10%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEM 253
           K   T KP  L++R +  +T   D+ILD F GS T+              R FI +++
Sbjct: 393 KAFDTPKPVGLINRCIQIATTKQDVILDFFAGSATTAHAVINSNVEDNGNRKFIMVQL 450


>gi|254778964|ref|YP_003057069.1| TCGA site-specific m6A methyltransferase [Helicobacter pylori B38]
 gi|254000875|emb|CAX28809.1| TCGA site-specific m6A methyltransferase [Helicobacter pylori B38]
          Length = 390

 Score = 59.2 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 53/140 (37%), Gaps = 17/140 (12%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
             K+    ++  L+++  +S+  I+ DPPYN + +   Y   H+                
Sbjct: 1   MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYEDAHA---------------- 44

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y+ + +  L+  + VLK +G +++    + +  +  +   +     N +    +     
Sbjct: 45  DYEKWIKEHLILAKAVLKQSGCIFISIDDNKMAEVKIIANEIFGT-RNFLGTFITKQATR 103

Query: 140 FRGRRFQNAHETLIWASPSP 159
              +     HE ++  + + 
Sbjct: 104 SNAKHINITHEYVLSYAKNK 123



 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 2/97 (2%)

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           L + +         +    LK + ++     D+      G++ L     + L  T KP  
Sbjct: 235 LYYQNRLIFKNNRPYEKYYLKESQDNCLSVLDFY--SRQGTKDLEKLGLKGLFKTPKPVG 292

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
           L+  +L+ ST    IILD F GSGT+     +  R +
Sbjct: 293 LIKYLLLCSTPKDSIILDFFAGSGTTAQAVIEANRDY 329


>gi|237738446|ref|ZP_04568927.1| LOW QUALITY PROTEIN: type III restriction-modification system
           methylation subunit [Fusobacterium mortiferum ATCC 9817]
 gi|229420326|gb|EEO35373.1| LOW QUALITY PROTEIN: type III restriction-modification system
           methylation subunit [Fusobacterium mortiferum ATCC 9817]
          Length = 487

 Score = 59.2 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 59/212 (27%), Gaps = 22/212 (10%)

Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
            + I    N        +     +               + R  +++ +  ++       
Sbjct: 146 FYPIYYDKNKNEFFLEAKENTIQLFPKKHKNDDGTWMWSKPRFLKDSKD--LYLKDEKIY 203

Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
             + FN +  +   +  +   D               +   +    KP   L   L   T
Sbjct: 204 IKHYFNEEEDQNRYQRNKSFLDEFQNSTGTKVLNSLFEYSGIFDNPKPIKFLEWCLNLCT 263

Query: 222 KPGDIILDPFFGSGTSGAVAKKL------RRSFIGI-------EMKQDY-------IDIA 261
               IILD F GS T+     +L       R +I +       E  + Y        +I 
Sbjct: 264 SSSSIILDFFSGSATTAHAVMQLNAEDGGNRKYIMVQLPEVCDEKSEAYKAGYKNICEIG 323

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
            +RI         + T+    R +  + F + 
Sbjct: 324 KERIRRAGEKVKSDETLPVENREKLDIGFKVF 355


>gi|317179703|dbj|BAJ57491.1| Type III DNA modification enzyme [Helicobacter pylori F30]
          Length = 460

 Score = 59.2 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 68/184 (36%), Gaps = 18/184 (9%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSL--------VDAVT 69
             +IKG+++  L+ L    ++ + +I+ DPPYN + +  +Y  D S         +D   
Sbjct: 90  HILIKGDNLDALKILRQSYSEKIKMIYIDPPYNTKNDNFIYSDDFSQSNEEILKTLDYSK 149

Query: 70  DSWDKFSSF------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-N 122
           +  D   +         + +F    LL  + +LK +G +++    +   ++  +   +  
Sbjct: 150 EKLDYIKNLFGSKCHSGWLSFMYPRLLLAKDLLKQDGVIFISIDDNEAAQLKLLCDEIFG 209

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
                  + R +        +  +N    L +   S   K    + +     +E    R 
Sbjct: 210 EGNFVAEMPRLTKKAGKSTNQIAKNHDYVLCYQKNSINFKQIDIDENDYSLKDEFYNERG 269

Query: 183 DWLI 186
            + +
Sbjct: 270 GYKL 273



 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 3/128 (2%)

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
           +  +  W      +  +N     +  R      T    +    +K Y   Y         
Sbjct: 318 IDWVWRWSKAKFDFGLANGFVEVKNNRIYTKTYT---KAKISDSKPYKIEYFNRTKNISS 374

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           ++   +      S  +     + + +    KP  L+S ++  +T+ GDIILD F GSGT+
Sbjct: 375 IEFLDNKYSNDMSNKKLQSIFNVKNIFDYSKPVELISFLIDQTTEKGDIILDFFAGSGTT 434

Query: 238 GAVAKKLR 245
                +  
Sbjct: 435 AHAVLESN 442


>gi|224438797|ref|ZP_03659652.1| putative methyltransferase cytosine (N4) specific (C1-like) protein
           [Helicobacter cinaedi CCUG 18818]
 gi|313145139|ref|ZP_07807332.1| DNA methyltransferase C1 [Helicobacter cinaedi CCUG 18818]
 gi|313130170|gb|EFR47787.1| DNA methyltransferase C1 [Helicobacter cinaedi CCUG 18818]
          Length = 359

 Score = 59.2 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 31/51 (60%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           +P +    +    + + +K GDI+LDPF GSGT+   ++ L+R+ IG ++ 
Sbjct: 18  YPAKFIIDIALHYISNYSKQGDIVLDPFCGSGTTLLASRILKRNAIGFDIN 68



 Score = 38.4 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 22/140 (15%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSL---------VDAVTDSWDKFSSF----EAYDAFTR 86
           V LI   PPY    +  LY     L         +D    S  ++SS     E ++    
Sbjct: 219 VSLILTSPPYPNTYDYYLYHKHRMLWLDFNVKFSMDNEIGSRREYSSLKLPKEKFNKDLF 278

Query: 87  AWLLACRRVLKPNGTLWVIGS--------YHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
                C ++LK +G + +I          YH    + ++ +   + ++            
Sbjct: 279 EIFFECNKILKRHGFVVIIMGDGKIAGKIYHAKDELVSLCEVFQWKLIKHSYSELDKTSR 338

Query: 139 NF-RGRRFQNAHETLIWASP 157
           +F    R +N  E ++    
Sbjct: 339 SFSSAFRTKNKKEHILIFQK 358


>gi|310779860|ref|YP_003968192.1| Site-specific DNA-methyltransferase (adenine-specific) [Ilyobacter
           polytropus DSM 2926]
 gi|309749183|gb|ADO83844.1| Site-specific DNA-methyltransferase (adenine-specific) [Ilyobacter
           polytropus DSM 2926]
          Length = 716

 Score = 59.2 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 67/189 (35%), Gaps = 22/189 (11%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHS---- 63
            ++    + ++  IKG+++ VL+ L +   + + +I+ DPPYN +    +Y  +      
Sbjct: 125 NSKEENRDSENLYIKGDNLEVLKHLDSGYREKIKMIYIDPPYNTKSGEFVYNDNRDFSAK 184

Query: 64  -----LVDAVTDSWDK---------FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
                +   + D  +K          SS  A+  F    L   R++L  +G +++    +
Sbjct: 185 ELNKLVRSNIIDEEEKERILKWEGNSSSHSAWLTFMFPRLYLARKLLTEDGVIFISIDDN 244

Query: 110 NIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
            + ++  M   +         +   +N            AHE L+    S     Y    
Sbjct: 245 ELAQLKLMCDEIFGEENFIANIAVVNNLKGRSDDEYIATAHENLLIYRKSTSYSTYGIPM 304

Query: 169 DALKAANED 177
                   D
Sbjct: 305 PEDYIKEYD 313



 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 60/163 (36%), Gaps = 16/163 (9%)

Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL-----IWASPSPKAK 162
           Y+N       L      I   I  + S+            A E +      + +   +  
Sbjct: 346 YYNQETKKIYLDENEGSIK--IYPKLSDGSDGCWRWGKATAVERIDELEAKYINKRNEFD 403

Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICS---GSERLRNKDGEKLHPTQKPEALLSRILVS 219
            Y  +Y         V+ +S WL    S   G++ +R   G K+  + K    +S  L  
Sbjct: 404 IYQKDYLIQNGEQRIVKAKSFWLDKSFSSDAGTKSVRELFGTKVFSSPKAVDFISYCLSQ 463

Query: 220 STKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQD 256
             K  DIILD F GS T+     KL       R +I ++++++
Sbjct: 464 GIKDEDIILDFFSGSATTSHAVNKLNLEDGGNRKWIMVQLEEE 506


>gi|208779528|ref|ZP_03246873.1| DNA methylase domain protein [Francisella novicida FTG]
 gi|208744489|gb|EDZ90788.1| DNA methylase domain protein [Francisella novicida FTG]
          Length = 716

 Score = 59.2 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 55/146 (37%), Gaps = 19/146 (13%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVD- 66
           E        ++ +I+G++I  L+ L A     + +I+ DPPYN +    +Y  +    + 
Sbjct: 94  EQSKDFDNTENVVIRGDNIDTLKILRANYTNKIKMIYIDPPYNTKSENFVYNDNFKKNEE 153

Query: 67  ------AVTDSWDKF-------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
                  + +    F        S   + +F    L   R +LK +G +++    +    
Sbjct: 154 ELIKEFGLAEETQNFLTNVYGTRSHSGWLSFMYPRLKIARELLKEDGVIFISIDDNEQAN 213

Query: 114 IGTMLQNLN--FWILNDIVWRKSNPM 137
           +  +   +      + DIVW   +  
Sbjct: 214 LKIICDEIFGEENFVGDIVWNGQSGA 239



 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 56/143 (39%), Gaps = 33/143 (23%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLR--- 245
           +G+++++   G  +    KP   ++ ++ +S+ +  DI+LD F GSGT+G    +L    
Sbjct: 385 TGTKQIKELFGVSVFSNPKPITAVNHLIGISNLQDKDIVLDFFAGSGTTGDAVMQLNAED 444

Query: 246 ---RSFIGIEMKQ-----------DYID----------IATKRI----ASVQPLGNIELT 277
              R +I  +  +           ++            I  +R+      ++    +E  
Sbjct: 445 GGKRKYILAQWDEQIDPIKKKEAYEFCKDNDFEPVISSITIERLNRAGEKIKVDIQVEFD 504

Query: 278 VLTGKRTEPRVAFNLLVERGLIQ 300
               K+   +     L E+  IQ
Sbjct: 505 AENSKKKPNQEKLAELREK-YIQ 526


>gi|325266724|ref|ZP_08133400.1| hypothetical protein HMPREF9098_1127 [Kingella denitrificans ATCC
           33394]
 gi|324981833|gb|EGC17469.1| hypothetical protein HMPREF9098_1127 [Kingella denitrificans ATCC
           33394]
          Length = 880

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 7/133 (5%)

Query: 186 IPICSGSERLRNKDGEKLHP--TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           +P     E          HP  T+ P  ++ +++   T+PG+I+LD F G+G +G  A++
Sbjct: 94  LPFGGDLEAESRHPVYSFHPYHTKVPPEVIKKLIEHYTRPGEIVLDAFSGTGMTGVAARE 153

Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQ 303
             R  + +++    I      +   +  G+     L     E R     + +   I+   
Sbjct: 154 CGRHGVTVDLSP--IATFISAVNVNKNPGHEVAMALKKIIQESRKELGWVYQ---IKESA 208

Query: 304 ILTNAQGNISATV 316
           IL  A   + A V
Sbjct: 209 ILYEANYFVWADV 221



 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 10/80 (12%)

Query: 32  LEKLPAKSVDLIFADPPY---------NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           L ++P  S+D I+ DPP+         NL L G L        +AV +   K  +F+ Y 
Sbjct: 444 LNQIPDASIDYIYTDPPFGANIIYSEMNLILEGWLRVLSSEKPEAVINE-AKNKAFDDYG 502

Query: 83  AFTRAWLLACRRVLKPNGTL 102
              R+      RVLKP   +
Sbjct: 503 LLMRSVFREYYRVLKPGRWI 522


>gi|118462638|ref|YP_879564.1| adenine specific DNA methylase Mod [Mycobacterium avium 104]
 gi|118163925|gb|ABK64822.1| adenine specific DNA methylase Mod [Mycobacterium avium 104]
          Length = 662

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 68/199 (34%), Gaps = 15/199 (7%)

Query: 21  DKIIKGNSISVLEKL---PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
             +I   +   LE L      ++D I+ DPPYN          D    +   +S D +  
Sbjct: 88  HTVINAENFHALEMLTYTHRHAIDAIYIDPPYNSGAK------DWKYNNDYVESDDDYRH 141

Query: 78  FEAYDAFTRAWLLACRRVLKP-NGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            + + A     LL  R +L P +  L V        R+G +++ +       +V    NP
Sbjct: 142 SK-WLAMMERRLLIARELLNPADSVLIVTIDEKEYLRLGLLVEQMFPEARIQMVSSVINP 200

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
               R   F    E + +      A     N       +E  + RS    PI  G  R  
Sbjct: 201 GGASRTAAFTRVDEYIFFVKIGSAAPAKHSNDMLFTDVSEPDENRS----PIWRGMLRGG 256

Query: 197 NKDGEKLHPTQKPEALLSR 215
           +       P++    L+ R
Sbjct: 257 SGPLRSDSPSKFYPVLVDR 275



 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 16/101 (15%)

Query: 201 EKLHPTQKPEALLSRILV--SSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGI- 251
            +  P  K    +   L      KP  ++LD F GSGT+     +L       R  I + 
Sbjct: 413 NRKFPYPKSLYAVEDTLRFFIDDKPDAVVLDFFSGSGTTAHAVMRLNKQDGGRRQCISVT 472

Query: 252 --EMKQDYIDIATKRIASVQPLGNIELTVLT--GKRTEPRV 288
             E+  D  +    R   ++P G+ +   L      T+PR+
Sbjct: 473 NNEVSAD--EQTRLRREGLRP-GDADWEALGICDYITKPRI 510


>gi|261839116|gb|ACX98881.1| hypothetical protein HPKB_0271 [Helicobacter pylori 52]
          Length = 237

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 52/139 (37%), Gaps = 17/139 (12%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            K+    ++  L+++  +S+  I+ DPPYN + +   Y   H+                 
Sbjct: 11  HKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYEDAHA----------------D 54

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           Y+ +    L+  + VLK +G +++    + +  +  +   +     N +    +      
Sbjct: 55  YEKWIEEHLILAKAVLKQSGCIFISIDDNKMAEVKIIANEIFGT-CNFLGTFITKQATRS 113

Query: 141 RGRRFQNAHETLIWASPSP 159
             +     HE ++  + + 
Sbjct: 114 NAKHINITHEYVLSYAKNK 132


>gi|207111602|ref|ZP_03245764.1| type II DNA modification (methyltransferase [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 43

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            +   +   D I DPF GSGT+   A  L R  +G+E++++Y 
Sbjct: 1   CIQLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEIEKEYC 43


>gi|145637603|ref|ZP_01793259.1| hypothetical protein CGSHiHH_07019 [Haemophilus influenzae PittHH]
 gi|145269200|gb|EDK09147.1| hypothetical protein CGSHiHH_07019 [Haemophilus influenzae PittHH]
          Length = 191

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 7/65 (10%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLY 58
                    ENQNS    ++ +I+G+++ VL+ L       + +I+ DPPYN   +G +Y
Sbjct: 83  EDIEHNQKPENQNS----ENVLIQGDNLEVLKHLKHAYKNQIKMIYIDPPYNTGSDGFVY 138

Query: 59  RPDHS 63
           + D  
Sbjct: 139 QDDRK 143


>gi|253687245|ref|YP_003016435.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251753823|gb|ACT11899.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 658

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 87/259 (33%), Gaps = 39/259 (15%)

Query: 12  NQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLN-------------- 54
           N       ++  I+G+++ VL+ L       V LI+ DPPYN   +              
Sbjct: 121 NSKDWDTTQNVFIEGDNLEVLKILQRHYHNKVKLIYIDPPYNKGKDFIYPDNYKEGLNSY 180

Query: 55  ---GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
               +    +   V   +++  ++ S   +       L   R +L  +G +++    +  
Sbjct: 181 LEWTRQVNEEGKKVSTNSETEGRYHSN--WLNMMYPRLKLARNLLTDDGVIFISIDDNEQ 238

Query: 112 FRIGTMLQNLNFW--ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS-----PKAKGY 164
             +  +   +      L  IVW+K     N         H+ ++  S             
Sbjct: 239 DNLKKLCNEVFGEGNFLGQIVWKKKTNGNNMG--VIPPVHDYIVVYSRRLSDALNIGYPI 296

Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSER------LRNKDGEKLHPTQKPEALLSRILV 218
           T  +     +N D   R  W     S + +         + G++ +P++    + + I V
Sbjct: 297 TQEHIEKTYSNPDDDPRGPWTTMDLSANHKGPYFAIKNPETGQEFYPSEGRFWVFNEIEV 356

Query: 219 SSTKPGDIILDPFFGSGTS 237
                   I+  F  SGT+
Sbjct: 357 LRRITDGRII--FGKSGTT 373



 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 37/111 (33%), Gaps = 22/111 (19%)

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
           E             +    L  K     HP  KP  LL  +   +T    I+LD F GS 
Sbjct: 392 ESWWDNHGMNEDATNEIRNLFGKSKLFTHP--KPSQLLYNLAKIATNDNSIVLDFFAGSA 449

Query: 236 TSGAVAKKLR------RSFIGIEM------KQDY--------IDIATKRIA 266
           T+     +L       R FI +++        +          DI+ KRI 
Sbjct: 450 TTAHAVMQLNAEDNGKRRFIMVQLPEPTPEDSEARKAGFATIADISRKRIE 500


>gi|294648625|ref|ZP_06726088.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
 gi|292825501|gb|EFF84241.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
          Length = 258

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 61/155 (39%), Gaps = 24/155 (15%)

Query: 20  KDKIIKGNSISVL----EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           ++ +IKGN++  L    E+L  K V LI+ DPPYN + +   Y              +  
Sbjct: 111 QNLLIKGNNLLALYSLRERLAGK-VKLIYIDPPYNTESDSFTY--------------NDS 155

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRK 133
            +  ++  F +  L   R +LK  G ++V    +    +  ++  +      LN I  + 
Sbjct: 156 FNHSSWLTFMKNRLEVARDLLKEEGVIFVQCDDNEQAYLKVLMDEIFGRSNFLNQISVKM 215

Query: 134 SNPMPNFRG---RRFQNAHETLIWASPSPKAKGYT 165
                   G   ++ +   E +I  + +   + Y 
Sbjct: 216 KQTSGASGGGEDKKLKKNIEYIIIYTKNIDPRQYC 250


>gi|289663951|ref|ZP_06485532.1| hypothetical protein XcampvN_12985 [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 354

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%)

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           +   +   ++PG+ + DPF G G++   A    R+  G+E+      +A  R+ 
Sbjct: 42  MRPFVRHFSQPGEQVFDPFCGFGSTLLAAALEARNAHGMEIDPARAQLARTRLQ 95


>gi|219872169|ref|YP_002476544.1| type III restriction-modification system methyltransferase
           (adenine-specific)/adenine specific DNA methylase Mod
           [Haemophilus parasuis SH0165]
 gi|219692373|gb|ACL33596.1| type III restriction-modification system methyltransferase
           (adenine-specific)/adenine specific DNA methylase Mod
           [Haemophilus parasuis SH0165]
          Length = 635

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 85/244 (34%), Gaps = 29/244 (11%)

Query: 20  KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQ------------LNGQLYRPD--- 61
           ++  I+G+++  L+ L       + +I+ DPPYN               N  L R +   
Sbjct: 99  QNLFIEGDNLDALKLLQETYLGKIKMIYIDPPYNTGNDFIYNDDFTENYNDFLERSNQID 158

Query: 62  --HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
              + + A T+S  +F S   + +   + L   R +L  +G +++         +  +  
Sbjct: 159 EEGNRLTANTESNGRFHS--DWLSMMYSRLKLARNLLSDDGVIFISIDECEYDNLRKLCN 216

Query: 120 NLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY---TFNYDALKAA 174
            +      ++ ++W+K     N      +     L++A              +    +  
Sbjct: 217 EIFGTNNFVDSLIWKKLYGGKNDSKWFLRYHDYILVYAKNKNLWYPNLLPRTDKQNDRYK 276

Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHP--TQKPEALLSRILVSSTKPGDIILDPFF 232
           N D   R  W     +G    ++   + + P           R +V+  K  +++ D   
Sbjct: 277 NPDNDPRGPWKSGDFTGIGETQSCRYKIISPSGAVFYPKEGKRWIVNQEKFNELLEDNRI 336

Query: 233 GSGT 236
             G+
Sbjct: 337 WFGS 340



 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 20/87 (22%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGI---- 251
           K     KP  LL R+    +    +ILD F GS T+     +L       R FI +    
Sbjct: 387 KFFDYPKPVELLHRLSHLGSNKNALILDFFAGSSTTAHAVMQLNAEDNGNRRFIMVQLPE 446

Query: 252 ---EMKQDY-------IDIATKRIASV 268
              E  + Y        +I+ +RI   
Sbjct: 447 KTDEKSEAYKAGYSTIAEISKERIRRA 473


>gi|308061614|gb|ADO03502.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
           pylori Cuz20]
          Length = 390

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 53/140 (37%), Gaps = 17/140 (12%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
             K+    ++  L+++  +S+  I+ DPPYN + +   Y   H+                
Sbjct: 1   MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYEDAHA---------------- 44

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y+ + +  L+  + VLK +G +++    + +  +  +   +     N +    +     
Sbjct: 45  DYEKWIKEHLILAKAVLKQSGCIFISIDDNKMAEVKIIANEIFGT-CNFLGTFITKQATR 103

Query: 140 FRGRRFQNAHETLIWASPSP 159
              +     HE ++  + + 
Sbjct: 104 SNAKHINITHEYVLSYAKNK 123



 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 11/107 (10%)

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           L + +         +    LK + ++     D+      G++ L     + L  T KP A
Sbjct: 235 LYYQNRLIFKNNRPYEKYYLKESQDNCLSVLDFY--SRQGTKDLEKLGLKGLFKTPKPVA 292

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           L+  +L+ ST    IILD F GSGT+             IE+ +DY 
Sbjct: 293 LIKYLLLCSTPKDSIILDFFAGSGTTAQAV---------IEVNKDYY 330


>gi|224372034|ref|YP_002606199.1| site-specific DNA-methyltransferase (Type III DNA modification
           enzyme) [Desulfobacterium autotrophicum HRM2]
 gi|223694753|gb|ACN18035.1| site-specific DNA-methyltransferase (Type III DNA modification
           enzyme) [Desulfobacterium autotrophicum HRM2]
          Length = 634

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 60/194 (30%), Gaps = 19/194 (9%)

Query: 20  KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQL------NGQLYRPDHSLVDAVTD 70
           ++  I+G+++ VL+ L     K V +I+ DPPYN         N +    ++  +    D
Sbjct: 88  QNIFIEGDNLEVLKLLQKSYHKKVKMIYIDPPYNTGKDFVYKDNFKDNIKNYKEITGQVD 147

Query: 71  SWDKFSSFE---------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
              +  S            +       L   R +LK +G +++    + +  +  M   +
Sbjct: 148 GEGRNLSNNPETSGRYHTDWLNMMYPRLKLARNLLKDDGVIFISIDDNEVSNLRKMCDEV 207

Query: 122 -NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
                   I   +S               E ++         G        ++ +     
Sbjct: 208 FGDENFIAIFPWRSRTAKADVPFGVSCDVEWIVCYGKPYFVAGRLGERKYYQSDDFSEPW 267

Query: 181 RSDWLIPICSGSER 194
           R        +  ER
Sbjct: 268 RMQDSTTNKTKEER 281



 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 6/69 (8%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA------VAKKL 244
           GS+ +RN  G ++    KP  L+   + + + P  II+D F GSGT+         + K 
Sbjct: 376 GSKEIRNLFGPQVFSYPKPTGLIKFFVENISDPDAIIMDFFAGSGTTADAMMQQNASDKG 435

Query: 245 RRSFIGIEM 253
            R F+ +++
Sbjct: 436 NRKFLLVQL 444


>gi|254458814|ref|ZP_05072238.1| type III restriction-modification system StyLTI enzyme mod
           [Campylobacterales bacterium GD 1]
 gi|207084580|gb|EDZ61868.1| type III restriction-modification system StyLTI enzyme mod
           [Campylobacterales bacterium GD 1]
          Length = 550

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 71/192 (36%), Gaps = 18/192 (9%)

Query: 5   NSLAINENQNSIFEWKDKIIKGN---SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
           N++  N    +I    + +I+G+   S+ VL       +D+I+ DPPYN +    +Y   
Sbjct: 49  NNIKTNTISTNILRPSNILIEGDNYHSLQVLNYTHNGKIDVIYIDPPYNTKNKDFIYN-- 106

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
               D   D+ D +   + +  F    L     +L   G +++    + + R+  + + +
Sbjct: 107 ----DTYVDAEDGYKHSK-WLNFMEKRLRLAHNLLTEKGVMFISIDDNEMPRLNLLCKKI 161

Query: 122 N-----FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL---KA 173
                    + D+   + +          +  HE +I    + K       Y        
Sbjct: 162 FGENNVETYIWDLRDFEESSFTKTASHTVRFEHEYIIACYKNNKKLSRFTEYRFKDREDF 221

Query: 174 ANEDVQMRSDWL 185
           +N D   R +W+
Sbjct: 222 SNIDNDPRGEWM 233



 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 8/89 (8%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL--- 244
           I   +E     DG +L    KP  L+ R++  S+    IILD F GSGT+G     L   
Sbjct: 316 ITGKNEIKELFDGNELFNFPKPTTLIKRLVELSSNQTSIILDFFAGSGTTGQAILNLNQE 375

Query: 245 ---RRSFIGIEMKQDYI--DIATKRIASV 268
               R FI     ++ I  +I   RI  +
Sbjct: 376 DGGNRQFILCTNNENNICSEITYPRIKKI 404


>gi|167834884|ref|ZP_02461767.1| type III DNA modification methyltransferase [Burkholderia
           thailandensis MSMB43]
          Length = 671

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 54/153 (35%), Gaps = 21/153 (13%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNG----------------QLYRP 60
           ++ +I+G ++ VL+ L    A  V L++ DPPYN   +                      
Sbjct: 99  RNLMIEGENLEVLKLLQKSYAGRVKLVYIDPPYNTGKDFVYPDNFTDSLRHYLELTGQTT 158

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
               V + TD+  +F +   +       L   R +L  +G + V    H    +  +++ 
Sbjct: 159 GGKRVSSHTDASGRFHT--DWLNMIYPRLKLARDLLADDGVIAVHIDEHEQHALVLVMRE 216

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           +        V       P    R     HE+++
Sbjct: 217 IFGEDNELGVAVWDKRNPKGDARGIAYQHESIV 249



 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 71/220 (32%), Gaps = 30/220 (13%)

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF-RGRRFQNA 148
            A    +  +G ++ + S            +   + +  +      P P   RG R   A
Sbjct: 309 EAMYDRISADGRVYRLVS-MAWPNKKKAPDD---YFVPLVHPVTGEPCPVPERGWRNPPA 364

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
               +      +               ++    +   +    GS+    K         K
Sbjct: 365 TMQALIDKGLVEFGADETTQPQRIYFLDENMYENVPSVLPFGGSDDALMKSLGIPFDQPK 424

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQ------- 255
           P  L + I+   T   D+I+D F GSGT+      L       R ++ +++ +       
Sbjct: 425 PVELAASIIGWCTDGDDLIVDFFGGSGTTAHAVMALNAADGGNRRYVLVQLPEPLDAGSK 484

Query: 256 ------DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
                 D+   A +R+    PL   ELT    +R+  RVA
Sbjct: 485 DQKAAADFC--AAQRV----PLNLAELTKERLRRSAARVA 518


>gi|325912635|ref|ZP_08175018.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners UPII 60-B]
 gi|325478056|gb|EGC81185.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners UPII 60-B]
          Length = 381

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 55/129 (42%), Gaps = 15/129 (11%)

Query: 1   MSQKNSLAINENQNSIFEWKDK-----IIKGNSISVLEKLP---AKSVDLIFADPPYNLQ 52
           M Q N     E +    + KD+     +++G+++  L+ L    A  +D+I+ DPPYN  
Sbjct: 1   MMQDNIPVFTEVKEREIKAKDENSYNFLLEGDNLHSLKLLEKTHAGKIDVIYIDPPYNTG 60

Query: 53  LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
               +Y       D+  D  D + S   + +F    L   + +L   G +++    H   
Sbjct: 61  NKDFIYD------DSFVDKTDGY-SHSKWLSFMSERLEIAKLLLSEEGVIFISIDDHEQA 113

Query: 113 RIGTMLQNL 121
           ++  +  ++
Sbjct: 114 QLKLLCDSV 122


>gi|148927652|ref|ZP_01811108.1| type III restriction-modification system methylation subunit
           [candidate division TM7 genomosp. GTL1]
 gi|147887001|gb|EDK72513.1| type III restriction-modification system methylation subunit
           [candidate division TM7 genomosp. GTL1]
          Length = 299

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 20/117 (17%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL----- 244
           SG++ +       L    K   L+  +L        ++LD F GSGT+     +L     
Sbjct: 50  SGTKEVMELFEGALFDNPKSVRLMKYLLEFGCDEDGLVLDFFSGSGTTAHAVSQLNAEDG 109

Query: 245 -RRSFIGI-------EMKQDYI-------DIATKRIASVQPLGNIELTVLTGKRTEP 286
             R +I +       E  + Y        D+  +RI         +      +R  P
Sbjct: 110 GNRRWICVQLPELTSEKTEAYKAGYTVISDLTRERIRRASNKIKEDFADQLAERKVP 166


>gi|213417675|ref|ZP_03350802.1| Site-specific DNA-methyltransferase (adenine-specific) [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 421

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 64/177 (36%), Gaps = 19/177 (10%)

Query: 20  KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG--------------QLYRPDH 62
           K+ +I+G+++ VL+ L       V LI+ DPPYN   +               ++     
Sbjct: 63  KNLMIEGDNLEVLKLLQKSYTGKVKLIYIDPPYNTGKDFVYPDNFQDNMKNYLEITGQTE 122

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL- 121
             V   T++         +       +   R +L  +G +++    H +  + ++   + 
Sbjct: 123 EGVRVSTNAETSGRYHTDWLNMMYPRIKLARNLLSDSGFIFISIDEHEVHNLCSLCFEIF 182

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS-PKAKGYTFNYDALKAANED 177
                  ++   +NP      +    AHE ++  + +   AK Y F  D       +
Sbjct: 183 GEENFIALIANTNNPKGRSDDKFIATAHEYILVMTKNITHAKTYGFEPDDKILKRYN 239


>gi|218960512|ref|YP_001740287.1| DNA adenine modification methylase [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729169|emb|CAO80080.1| DNA adenine modification methylase [Candidatus Cloacamonas
           acidaminovorans]
          Length = 382

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           Q P  ++ R     TK  D +LD F GSGT+   +K+L R+ IGIE+  +  + A K I 
Sbjct: 165 QIPHQMMLR----YTKKDDWVLDTFLGSGTTLIESKRLGRNGIGIELNAEVANKAEKLIQ 220


>gi|51893399|ref|YP_076090.1| putative DNA modification methylase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51857088|dbj|BAD41246.1| putative DNA modification methylase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 395

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 3/103 (2%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           + T  P    +R L +  +PG+ +LDPF G GT+   A+      +GI+     + IA  
Sbjct: 46  YFTMFPLDFPTRYL-AQARPGEWVLDPFCGRGTTNYAARLHGLPTVGIDSSPVAVAIARA 104

Query: 264 RIASVQPLGNIELTVLTGKRTEP-RVAFNLLVERGLIQPGQIL 305
           ++  V P   I          EP  V      +     P  +L
Sbjct: 105 KLVQVTPDELIAEAERILAGPEPADVPEGHFWDLAY-HPRTLL 146


>gi|317181602|dbj|BAJ59386.1| Type II DNA modification enzyme [Helicobacter pylori F57]
          Length = 164

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 53/140 (37%), Gaps = 17/140 (12%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
             K+    ++  L+++  +S+  I+ DPPYN + +   Y   H+                
Sbjct: 1   MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYEDAHA---------------- 44

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y+ + +  L+  + VLK +G +++    + +  +  +   +     N +    +     
Sbjct: 45  DYEKWIKEHLILAKAVLKQSGCIFISIDDNKMAEVKIIANEIFGT-RNFLGTFITKQATR 103

Query: 140 FRGRRFQNAHETLIWASPSP 159
              +     HE ++  + + 
Sbjct: 104 SNAKHINITHEYVLSYAKNK 123


>gi|317479480|ref|ZP_07938612.1| DNA methylase [Bacteroides sp. 4_1_36]
 gi|316904380|gb|EFV26202.1| DNA methylase [Bacteroides sp. 4_1_36]
          Length = 634

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 64/172 (37%), Gaps = 25/172 (14%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLV 65
           + EN       K+  I+G+++ VL+ L       V +I+ DPPYN   N  +Y  D +  
Sbjct: 92  VVENSVDWDNTKNIYIEGDNLEVLKLLQRSYMGKVKMIYIDPPYNTG-NDFVYHDDFART 150

Query: 66  DA------------------VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
            A                   TD+  KF S   + +   A LL  R +L  +G +++   
Sbjct: 151 AAEEDIEAGNVDELGYRFRRNTDTNGKFHS--DWCSMIYARLLVARSLLTEDGVVFISID 208

Query: 108 YHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
            + +  +  +   +         +  +    P    +   N+H+ ++     
Sbjct: 209 DNEVRNLRNICDEVFGEHNFVAQLVWERAFSPKNDAKYVSNSHDYILMYVKQ 260



 Score = 43.4 bits (101), Expect = 0.050,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 51/143 (35%), Gaps = 26/143 (18%)

Query: 201 EKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
           + +    KP  LL R++ +++ K   I+LD F GS ++     K          FI +++
Sbjct: 392 KGVFDGPKPVRLLQRLITLANLKEDSIVLDFFSGSASTAHALMKTNSEKDKHCQFILVQL 451

Query: 254 ---------KQDY---IDIATKRIASVQPLGNIELTVLTGK-RTEPRVAFNLLVERGL-- 298
                     Q Y    +I  +RI         +  + T    T  RV    L E     
Sbjct: 452 PEEVSDSKKDQGYKNICEIGKERIRRAGAKIKADFPLTTQNLDTGFRV--YRLDESNYEK 509

Query: 299 --IQPGQILTNAQGNISATVCAD 319
             I P +   +     +  + AD
Sbjct: 510 VSISPKEYKQDQLDLFANNIKAD 532


>gi|281420500|ref|ZP_06251499.1| adenine specific DNA methylase Mod [Prevotella copri DSM 18205]
 gi|281405273|gb|EFB35953.1| adenine specific DNA methylase Mod [Prevotella copri DSM 18205]
          Length = 818

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 55/140 (39%), Gaps = 11/140 (7%)

Query: 21  DKIIKGN---SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
             +I+ +   ++ +L  L  + VD I+ DPPYN          D    +   D  D +  
Sbjct: 132 HTLIEADNFHALQLLAYLYPQQVDCIYIDPPYNSGA------TDWKYNNNYVDGNDSYRH 185

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIG-SYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            + + A   + LL  +++L P  ++ ++         +G +L+ +       +V    + 
Sbjct: 186 SK-WLAMMESRLLLAKKLLNPKNSVMIVTIDEKEYLHLGCLLEEMFPEANIQMVTSVISG 244

Query: 137 MPNFRGRRFQNAHETLIWAS 156
               R  +F    E + + S
Sbjct: 245 KGVSRDGQFSRVEEYVFFVS 264



 Score = 39.6 bits (91), Expect = 0.81,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 29/93 (31%), Gaps = 8/93 (8%)

Query: 200 GEKLHPTQKPEALLSRILVSST--KPGDIILDPFFGSGTSGAVAKKLR------RSFIGI 251
           GEK     K    +   +       P  +ILD F GSGT+      L       R  I +
Sbjct: 458 GEKRFDFPKSLYAVHDAIRFFVANNPNALILDFFSGSGTTLHAVNLLNKEDGGHRRCIMV 517

Query: 252 EMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
              +   +      A+    G+ E       R 
Sbjct: 518 TNNEVSAEEEKAFRANGLHKGDEEWEKFGIARY 550


>gi|169786876|ref|YP_001705689.1| putative methyltransferase cytosine (N4) specific (C1-like)
           [Acinetobacter baumannii SDF]
 gi|169150793|emb|CAP02987.1| putative methyltransferase Cytosine (N4) specific (C1-like)
           [Acinetobacter baumannii]
          Length = 390

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 189 CSGSERLRNKDGEKLHPTQ-KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
            S + R +    E LHP   K    L R L+ +   G  +LDPF GSGT+   A++L   
Sbjct: 32  WSFANREKAHPIESLHPYPAKFIGELPRSLIKTFNNGLPVLDPFAGSGTTLMEAQRLGLE 91

Query: 248 FIGIEMKQDYIDIAT 262
            +GI++      I  
Sbjct: 92  AVGIDLNPIACLITK 106


>gi|124262817|ref|YP_001023287.1| hypothetical protein Mpe_B0277 [Methylibium petroleiphilum PM1]
 gi|124262063|gb|ABM97052.1| hypothetical protein Mpe_B0277 [Methylibium petroleiphilum PM1]
          Length = 413

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 29/66 (43%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +H    P  L    +   T+ G +++DP  G GT+   A+   R ++  E   +Y+  A+
Sbjct: 335 VHGATMPLKLAQFYIEYLTEQGQLVVDPCAGWGTTARAAEMAGRRWLTTEQMGEYVLGAS 394

Query: 263 KRIASV 268
            R    
Sbjct: 395 NRFVDA 400


>gi|270604530|ref|ZP_06221611.1| type III restriction-modification system EcoPI enzyme mod
           [Haemophilus influenzae HK1212]
 gi|270318174|gb|EFA29394.1| type III restriction-modification system EcoPI enzyme mod
           [Haemophilus influenzae HK1212]
          Length = 320

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 51/150 (34%), Gaps = 18/150 (12%)

Query: 28  SISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLV---------------DAVT 69
           ++ VL+ L       + +I+ DPPYN   +G +Y+ D                     + 
Sbjct: 6   NLEVLKHLKHAYKNQIKMIYIDPPYNTGSDGFVYQDDRKFTPQQLVELGMDLEEAERVLE 65

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
            + +K +S  A+  F    L   R +L+ +G +++    +   ++  +   +        
Sbjct: 66  FTANKSNSHSAWLTFIYPRLYIARELLREDGVIFISIDDNEQAQLKLLCDEVFGEENFVA 125

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
                        +     HE ++  +   
Sbjct: 126 ELPWKGRGGGADDKNLLQNHEYILMYTKYK 155


>gi|309806785|ref|ZP_07700775.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
           03V1-b]
 gi|308166822|gb|EFO69011.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
           03V1-b]
          Length = 387

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 53/123 (43%), Gaps = 16/123 (13%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLY 58
            ++   A +EN        + +++G+++  L+ L    A  +D+I+ DPPYN      +Y
Sbjct: 12  KEREIKAKDENS------YNFLLEGDNLHSLKLLEKTHAGKIDVIYIDPPYNTGNKDFIY 65

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
                  D+  D  D + S   + +F    L   + +L   G +++    H   ++  + 
Sbjct: 66  D------DSFVDKTDGY-SHSKWLSFMSERLEIAKLLLSEEGVIFISIDDHEQAQLKLLC 118

Query: 119 QNL 121
            ++
Sbjct: 119 DSV 121


>gi|311739382|ref|ZP_07713217.1| DNA (cytosine-5-)-methyltransferase [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311305198|gb|EFQ81266.1| DNA (cytosine-5-)-methyltransferase [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 419

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 57/167 (34%), Gaps = 11/167 (6%)

Query: 18  EWKDKIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLN---GQLYRPDHSLVDAVTDSW 72
           +  + II  +++ VL++L    +  D+I+ DPPYN   +      YR    +       W
Sbjct: 52  DTDNAIIAADNLPVLQRLTSRGELFDVIYIDPPYNTGKDFVYRDNYRLRRQMRSGSYAEW 111

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVW 131
                   + +     L+  R VL   G ++V      +     +L  +         + 
Sbjct: 112 -----HSQWLSMMLPRLILARDVLSAQGFIFVSIGEDEVANTRKVLDEVFGEECFAGQLI 166

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
            K         +     HE ++  + +P   G+  +     +   + 
Sbjct: 167 WKKAGTGKNDSKYAVVEHEYILCYARTPDNPGFNVDLHGHTSTKYNH 213



 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 43/126 (34%), Gaps = 4/126 (3%)

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
           +   +  +  V ++      +   + +   + L++         YT NY  + A    + 
Sbjct: 244 DGKEYWPDQPVGKEKVARWRWGRDKVEQRFDELVFRRGFV----YTKNYQKVGARPRSIL 299

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
               + +      +       E +    KP  L+  ++  +      +LD F GSGT+  
Sbjct: 300 DGERFGVTRTGRRDAEDVMGIEGVFEFPKPVRLIKHLISIAGGKNARVLDFFAGSGTTAQ 359

Query: 240 VAKKLR 245
              +L 
Sbjct: 360 AVVELN 365


>gi|121534470|ref|ZP_01666293.1| Site-specific DNA-methyltransferase (adenine-specific) [Thermosinus
           carboxydivorans Nor1]
 gi|121306963|gb|EAX47882.1| Site-specific DNA-methyltransferase (adenine-specific) [Thermosinus
           carboxydivorans Nor1]
          Length = 654

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 62/171 (36%), Gaps = 21/171 (12%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPD--- 61
            I E+  +    ++  I+G+++ VL+ L       + +I+ DPPYN   N  +YR D   
Sbjct: 82  YIPEDSKNPDTTENLYIEGDNLEVLKLLRNSYYNKIKMIYIDPPYNTG-NDFIYRDDFKV 140

Query: 62  ----HSLVDAVTDSWDKF---------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
               ++L++   D + +               + +     L   + +L  +G +++    
Sbjct: 141 SEEENALLEGEKDEYGERLIVNQKSNGRFHSNWLSMIYPRLKVAKDLLTEDGVIFISIDD 200

Query: 109 HNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
           + +  +  +   +                  +   +  +N  E ++    +
Sbjct: 201 NEVHNLKKICDEIFGEENFIACFTWVKKKKGSHLSKTIRNMVEYILLFGKN 251



 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 22/97 (22%)

Query: 207 QKPEALLSRILVS--STKPGDIILDPFFGSGTSGAVAKKL------RRSFIGI------- 251
            KP +LL  ++ +         +LD F GS T+     +L       R FI +       
Sbjct: 403 PKPVSLLKYLINTIGYFNKEFTVLDFFSGSATTAHAVMQLNAEDGGNRKFIMVQLPEPCD 462

Query: 252 EMKQDY-------IDIATKRIASVQPLGNIELTVLTG 281
           E  + Y        +I  +RI         E     G
Sbjct: 463 EKSEAYKAGFKNICEIGKERIRRAGEKIKEENKDKEG 499


>gi|167040461|ref|YP_001663446.1| adenine-specific DNA-methyltransferase [Thermoanaerobacter sp.
           X514]
 gi|300914512|ref|ZP_07131828.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Thermoanaerobacter sp. X561]
 gi|307724252|ref|YP_003904003.1| adenine-specific DNA-methyltransferase [Thermoanaerobacter sp.
           X513]
 gi|166854701|gb|ABY93110.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Thermoanaerobacter sp. X514]
 gi|300889447|gb|EFK84593.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Thermoanaerobacter sp. X561]
 gi|307581313|gb|ADN54712.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Thermoanaerobacter sp. X513]
          Length = 632

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 67/187 (35%), Gaps = 27/187 (14%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS--- 77
           I+G+++ VL+ L       + +I+ DPPYN   N  +Y+ D   +   +D  +       
Sbjct: 94  IEGDNLEVLKLLRNSYYGKIKMIYIDPPYNTG-NDFIYKDDFKKLKEESDKEEGELDENG 152

Query: 78  -------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN-- 122
                           +       L   + +L  +G +++    + +  +  +   +   
Sbjct: 153 ERLIKNQRSSARFHSNWLNMMYPRLKVAKDLLSDDGVIFISIDDNEVANLRKICDEIFGE 212

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF----NYDALKAANEDV 178
              +  I+W K   +     + F  +H+ +I  + + +    T     +    +  N D 
Sbjct: 213 ENFIATIIWEKKYGI-QNDAKWFSTSHDYIIAVAKNKEVFRPTLLPRTDKQNARYKNPDN 271

Query: 179 QMRSDWL 185
             R  W+
Sbjct: 272 DPRGPWI 278



 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 33/94 (35%), Gaps = 20/94 (21%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGI----- 251
           +    KP  L+ R +   TK   I+LD F GS T+     +L       R FI +     
Sbjct: 379 IFDYPKPVDLVKRCIHIGTKHDSIVLDFFSGSATTAHAVMELNAEDGGKRKFIMVQLPER 438

Query: 252 --EMKQDY-------IDIATKRIASVQPLGNIEL 276
             E  + Y        DI  +RI         E 
Sbjct: 439 VDEESEAYKAGFKTIADIGKERIRRAGEKIKEEF 472


>gi|296132591|ref|YP_003639838.1| Site-specific DNA-methyltransferase (adenine-specific) [Thermincola
           sp. JR]
 gi|296031169|gb|ADG81937.1| Site-specific DNA-methyltransferase (adenine-specific) [Thermincola
           potens JR]
          Length = 612

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 59/158 (37%), Gaps = 27/158 (17%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQLN----------GQLYRPDHSLVDA--- 67
           I+G+++ VL+ L       V  I+ DPPYN   +             Y  D   VD    
Sbjct: 102 IEGDNLEVLKLLQESYLNKVKCIYIDPPYNTGKDFIYRDNFRQENGEYLEDSGQVDDEGN 161

Query: 68  ----VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-- 121
                T+S  +F S   +     + L   R +L+ +G +++    + +  +  +   +  
Sbjct: 162 RLFQNTESNGRFHS--DWLTMMYSRLKLARNLLRDDGVIFISIDDNEVANLRKICDEIFG 219

Query: 122 -NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
              +I + I   KS            + HE ++  S +
Sbjct: 220 TGNFICSFI--WKSKLGKVGTTSTVSSVHEYILTYSKN 255



 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 58/176 (32%), Gaps = 25/176 (14%)

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
           D+   K +          + A++ L         K              + Q+  D +IP
Sbjct: 300 DVYPIKDDGSEGRWRVGKEMAYDLLKHGHLRLVKKDNNRFEIYRIFPESESQIAHDTIIP 359

Query: 188 -----ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
                  +GS  L++ + +K     KP  L+  ++  +    DIILD F GS T+     
Sbjct: 360 GEIGTTANGSITLKSLNMQKTFDYSKPTELICFLMDLAKSKDDIILDFFSGSATTAHAVM 419

Query: 243 KL------RRSFIGI-------EMKQDY-------IDIATKRIASVQPLGNIELTV 278
           +L       R +I +       E  + Y        +I  +RI         E   
Sbjct: 420 QLNAEDGGNRKYIMVQLPEPTAENSEAYKAGYKNICEIGKERIRRAARKIQEETNA 475


>gi|261493016|ref|ZP_05989558.1| ribosomal protein L11 methyltransferase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261495164|ref|ZP_05991627.1| ribosomal protein L11 methyltransferase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261309140|gb|EEY10380.1| ribosomal protein L11 methyltransferase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261311360|gb|EEY12521.1| ribosomal protein L11 methyltransferase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 293

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 59/167 (35%), Gaps = 12/167 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    +L  + 
Sbjct: 95  WEREWMDNFHPMQFGKRLWICPSWREVPDPNAVNVMLDPGLAFGTGTHPTT---SLCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG     A KL  +  IGI++    I  +     + +  G  E
Sbjct: 152 LDSLDLEGKTVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAILASQN---NAEANGVAE 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
              L   + +PR     +V   ++     L     NI   V  +G L
Sbjct: 209 KLQLFLAKDQPRELQADVVVANIL--AGPLKELAPNIITLVKPNGNL 253


>gi|254360891|ref|ZP_04977037.1| ribosomal protein L11 methyltransferase [Mannheimia haemolytica
           PHL213]
 gi|153092370|gb|EDN73433.1| ribosomal protein L11 methyltransferase [Mannheimia haemolytica
           PHL213]
          Length = 293

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 59/167 (35%), Gaps = 12/167 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    +L  + 
Sbjct: 95  WEREWMDNFHPMQFGKRLWICPSWREVPDPNAVNVMLDPGLAFGTGTHPTT---SLCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG     A KL  +  IGI++    I  +     + +  G  E
Sbjct: 152 LDSLDLEGKTVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAILASQN---NAEANGVAE 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
              L   + +PR     +V   ++     L     NI   V  +G L
Sbjct: 209 KLQLFLAKDQPRELQADVVVANIL--AGPLKELAPNIITLVKPNGNL 253


>gi|261837706|gb|ACX97472.1| m6A methyltransferase [Helicobacter pylori 51]
          Length = 275

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 53/140 (37%), Gaps = 17/140 (12%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
             K+    ++  L+++  +S+  I+ DPPYN + +   Y   H+                
Sbjct: 1   MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYEDAHA---------------- 44

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y+ + +  L+  + VLK +G +++    + +  +  +   +     N +    +     
Sbjct: 45  DYEKWIKEHLILAKAVLKQSGCIFISIDDNKMAEVKIIANEIFGT-RNFLGTFITKQATR 103

Query: 140 FRGRRFQNAHETLIWASPSP 159
              +     HE ++  + + 
Sbjct: 104 SNAKHINITHEYVLSYAKNK 123


>gi|294807617|ref|ZP_06766410.1| DNA (cytosine-5-)-methyltransferase [Bacteroides xylanisolvens SD
           CC 1b]
 gi|294445053|gb|EFG13727.1| DNA (cytosine-5-)-methyltransferase [Bacteroides xylanisolvens SD
           CC 1b]
          Length = 394

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 3/96 (3%)

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKL---HPTQKPEALLSRILVSSTKPGDIILDPFFG 233
           D   +  W+    +    L  K  +K    H       ++ R++   +  GD++ DPF G
Sbjct: 284 DPVSKKPWIWDDVTRMRTLNTKQSQKKRQNHICPLQLDIVERLIERYSNKGDLVFDPFGG 343

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            GT    A +L R  +  E+  DY   +   +   +
Sbjct: 344 IGTVPYCAIRLGRKGLSTELNYDYWKDSLSYLHEAE 379



 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 10/91 (10%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K I  +++   +K+ + SVDL+    P++          D        +S DKF     Y
Sbjct: 36  KAINNDNVLECQKMESNSVDLVVTSIPFSNHYEYTPTYNDF----GHNESNDKFFEQMDY 91

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
                       R+LKP     +      +F
Sbjct: 92  LT------PELMRILKPGRLACIHVKDRVLF 116


>gi|62179778|ref|YP_216195.1| hypothetical protein SC1208 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62127411|gb|AAX65114.1| hypothetical protein SCH_1208 [Phage Gifsy-1]
 gi|322714245|gb|EFZ05816.1| DNA methylase N-4/N-6 [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 60

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 32/57 (56%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +L +I+ +S+KPGD++ D F GSG++   A    R  I +E++ +        + ++
Sbjct: 1   MLLQIINASSKPGDLVADFFMGSGSTVKAALLSGRRAISVELETERFSQTVSEVEAL 57


>gi|108804625|ref|YP_644562.1| adenine-specific DNA methylase containing a Zn-ribbon-like protein
           [Rubrobacter xylanophilus DSM 9941]
 gi|108765868|gb|ABG04750.1| adenine-specific DNA methylase containing a Zn-ribbon-like protein
           [Rubrobacter xylanophilus DSM 9941]
          Length = 703

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 49/145 (33%), Gaps = 22/145 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY--NLQLN---------------GQLYRPDHSL 64
           +I++ +S   L  LP  SVDL+  DPPY  N+  +                       +L
Sbjct: 459 RILRADSRD-LGALPDASVDLVLTDPPYLDNVAYSELSDFFLPWLELLGLAPAVEGLSAL 517

Query: 65  VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
             ++       ++ E Y       L   RRVL+P G L     +    R     Q L   
Sbjct: 518 EGSLAARGRDGAALEEYARSLAEALREVRRVLRPEGRLV----FTYQHRTAGAWQALAGA 573

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAH 149
           +    +           G R  +AH
Sbjct: 574 MAAARLRPVQVFPLLGNGDRGPHAH 598



 Score = 39.6 bits (91), Expect = 0.75,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +LDPF G GTS   A++L    IG+++      I  
Sbjct: 82  VLDPFVGGGTSVVEARRLGAEVIGVDVDAVACVITR 117


>gi|218884519|ref|YP_002428901.1| SufBD protein [Desulfurococcus kamchatkensis 1221n]
 gi|218766135|gb|ACL11534.1| SufBD protein [Desulfurococcus kamchatkensis 1221n]
          Length = 257

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 30/47 (63%)

Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
             T+PGD++LDP  GSGT+   AK L R+ I +++  + + +A  R+
Sbjct: 1   MYTRPGDVVLDPMVGSGTTLIEAKLLGRNSIDVDINYNAVMLALHRL 47



 Score = 40.0 bits (92), Expect = 0.65,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYN--LQLNGQLY 58
           K+  G++   L  L ++SVDL+   PPY   ++  G +Y
Sbjct: 90  KVYHGDARR-LSLLESESVDLVATHPPYFNIIEYGGAVY 127


>gi|144227622|gb|AAZ44509.2| putative type III restriction-modification system: methylase
           [Mycoplasma hyopneumoniae J]
          Length = 561

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 57/153 (37%), Gaps = 10/153 (6%)

Query: 96  LKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
           ++ NG ++  G     ++     ++     + D  WR +    ++  +        +++ 
Sbjct: 303 IEYNGKIYYAGGSQEKWQA----RHQGNRAVKDWRWRWARKKLDWGIKNG-----FIVFK 353

Query: 156 SPSPKAKGYTF-NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
           +    +K Y F + +  K            L     G++  +N    K+    KP  L+ 
Sbjct: 354 NEKVFSKQYQFVDNNNQKIERVSKFSNLILLAQGTEGTQEQKNIFSTKVFDHPKPIELIK 413

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
            ++         ILD F GSGT+G    +L R 
Sbjct: 414 YLINIHPNKNAKILDFFAGSGTTGHAVWELNRQ 446



 Score = 43.4 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 52/140 (37%), Gaps = 21/140 (15%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP----------------AKSVDLIF 44
           + +  +L+   N+N+  + ++ +I G +   L+ L                 A   D+I+
Sbjct: 76  LEKDENLSFKSNENN--QNQNTLIIGENYDALKNLLVLERERERERERERATAAGYDIIY 133

Query: 45  ADPPYNLQ---LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
            DPPYN Q     G     D   +      +    S   +       L   +++LK +G 
Sbjct: 134 IDPPYNTQASFNEGNQIANDKENILPSKFIYRDKYSRNGWLNLLNERLNLAKKLLKDDGI 193

Query: 102 LWVIGSYHNIFRIGTMLQNL 121
           ++V    +    +  ++  +
Sbjct: 194 IFVSIDDNQHGYLKVLMDEI 213


>gi|261419592|ref|YP_003253274.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           sp. Y412MC61]
 gi|319766408|ref|YP_004131909.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           sp. Y412MC52]
 gi|261376049|gb|ACX78792.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           sp. Y412MC61]
 gi|317111274|gb|ADU93766.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           sp. Y412MC52]
          Length = 648

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 53/150 (35%), Gaps = 17/150 (11%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQLN-----------GQLYRPDHSLVDAVT 69
           I+G+++ VL+ L       + +I+ DPPYN   +                    +  A T
Sbjct: 92  IEGDNLEVLKLLQKSYFGKIKMIYIDPPYNTGKDFVYKDDFHDNIKNYKEITQQMAKANT 151

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
           ++  +F +   +       L   R +L+ +G + V         +  +L  + F   N +
Sbjct: 152 ETNGRFHT--DWLNMMYPRLKLARNLLREDGVILVSIDDVEYANLKKILDEV-FGQENFV 208

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
                +       +    +HE ++    + 
Sbjct: 209 GSFIWSAGRKNDSKYISISHEYILCYFKNM 238



 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 72/214 (33%), Gaps = 46/214 (21%)

Query: 141 RGRRFQNAHETLIWASPSPKAKG----YTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
            G R+ N  + L   + +    G        Y      +E     S +     S S+RL+
Sbjct: 339 GGWRYMNKEKMLELINNNRIHFGEDETTIPCYKRYLFESEYQVPYSVFYQDNRSASKRLK 398

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTK--------PGDIILDPFFGSGTSGAVAKKL---- 244
           +  G+K+    K E ++ +++  ++           DIILD F GS T+     +L    
Sbjct: 399 DLFGKKVFDFPKDENIIKKLISIASYAQEGANSSTNDIILDFFSGSATTAHAVMQLNAED 458

Query: 245 --RRSFIGI-------EMKQDY-------IDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
              R FI +       E    Y        +I  +RI         E  V    +T+  +
Sbjct: 459 GGNRKFIMVQLPEKTDETSDAYKAGYKNICEIGKERIRRA-----GEKIVQETGKTDLDI 513

Query: 289 AFNLL---------VERGLIQPGQILTNAQGNIS 313
            F +           +       Q L + Q NI 
Sbjct: 514 GFKVFKLDSSNIKEWDPDFDNLEQTLFDLQNNIK 547


>gi|119383720|ref|YP_914776.1| DNA methylase N-4/N-6 domain-containing protein [Paracoccus
           denitrificans PD1222]
 gi|119373487|gb|ABL69080.1| DNA methylase N-4/N-6 domain protein [Paracoccus denitrificans
           PD1222]
          Length = 883

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 31/60 (51%)

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           + G ++H       ++ R +   T+PG+ + DPF G  T    A KL R  IG+E+ + Y
Sbjct: 786 RKGNEMHLCPLQYDIVDRAIAQYTEPGEWVYDPFGGLMTVPFRAIKLGRKGIGVELNKGY 845



 Score = 40.0 bits (92), Expect = 0.58,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 11/85 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + +  + ++    +   SV LI    P++ Q        D    D     W +       
Sbjct: 501 RCVHNDCVAETRSMADASVQLIVTSIPFSTQYEYSPNYADFGHTDDDPHFWQQMGFL--- 557

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIG 106
                  +    RVL+P G +  I 
Sbjct: 558 -------IPELLRVLEP-GRICAIH 574


>gi|218690017|ref|YP_002398229.1| site-specific DNA-methyltransferase, component of type III
           restriction-modification system [Escherichia coli ED1a]
 gi|218427581|emb|CAR08482.2| site-specific DNA-methyltransferase, component of type III
           restriction-modification system [Escherichia coli ED1a]
          Length = 632

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 67/194 (34%), Gaps = 29/194 (14%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQL------NGQLYRPDHSLVDAVTD 70
           K+ +I+G+++ VL+ L    A  V LI+ DPPYN         N Q    ++  +   T+
Sbjct: 97  KNLMIEGDNLEVLKLLQKSYAGKVKLIYIDPPYNTGKDFVYPDNFQDNMKNYLEITGQTE 156

Query: 71  SWDKFSSFEA--------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL- 121
              + S+           +       L   R +LK +G +++      +  +  +   + 
Sbjct: 157 DGARLSTNTETSGRYHTDWLNMIYPRLKLARNLLKEDGVIFISIDDTEVDNLKKVCSEIF 216

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS-----PKAKGYTFNY------DA 170
                   +  +    P      F + H+ ++  +         + G+  ++        
Sbjct: 217 GEENFVANIVWQKKYSPQNDATYFSDMHDHILVYAKQRKSSKNDSNGWNIDFLPRSDEQN 276

Query: 171 LKAANEDVQMRSDW 184
               N D   R  W
Sbjct: 277 AAYKNPDNDPRGVW 290



 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 51/167 (30%), Gaps = 29/167 (17%)

Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK- 202
           R     E             +  N + + +    +    D ++P    S +    + E  
Sbjct: 322 RCWQVSEKRFVELCKENKIWFGENGNNVPSIKRFLTEVQDGVVPTTWWSYKECGHNQEAK 381

Query: 203 ------------LHPTQKPEALLSRILVSST--KPGDIILDPFFGSGTSGAVAKKLR--- 245
                          T KP  LL RIL  +T      IILD F GSGT+           
Sbjct: 382 QELKKLMEGESVFFDTPKPLRLLDRILHLATTNDKDCIILDFFAGSGTTAHATLNKNIAD 441

Query: 246 ---RSFIGIEM-----KQDYI---DIATKRIASVQPLGNIELTVLTG 281
              R +I +++      + Y    ++  +R+         +     G
Sbjct: 442 SGSRRYIAVQLPEKIDDEKYYTISELTKERLRRAGKKVREDNPEWKG 488


>gi|163868946|ref|YP_001610175.1| type III restriction system methylase [Bartonella tribocorum CIP
           105476]
 gi|161018622|emb|CAK02180.1| type III restriction system methylase [Bartonella tribocorum CIP
           105476]
          Length = 621

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 66/188 (35%), Gaps = 25/188 (13%)

Query: 20  KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN-----------------GQLYR 59
           ++  I+G+++ VL+ L     + V +I+ DPPYN   +                  +   
Sbjct: 88  QNLFIEGDNLEVLKLLQKPYHRQVKMIYIDPPYNTGNDFVYKDDFKDGIQNYLEMTRQLD 147

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
            +   +   + S  ++ +   +       L   R +L+ +G +++    + +  +  +  
Sbjct: 148 NEGKRIGTNSSSAGRYHTN--WLNMMYPRLKLARNLLRDDGVIFISIDDNEVHNLRKLCD 205

Query: 120 NLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
            +      +  ++WR+  P            HE ++    S   +         K  N D
Sbjct: 206 EVFGEENFIAQLIWRRRAPSGMSENN-VSIDHEYVLCYQRSGIFEFMGRKKIFDKYQNPD 264

Query: 178 VQMRSDWL 185
              R  W+
Sbjct: 265 NDPRGPWI 272



 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 46/124 (37%), Gaps = 15/124 (12%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQ------ 255
           KP +LL+ +L   T   D+ILD F GSGT+     +L       R  I +++ +      
Sbjct: 382 KPISLLTTLLKQITTKDDLILDFFAGSGTTAHAVMQLNAEDGGKRRCISVQLPEPTDEKS 441

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
           +      K IA +       L     K  E + A     E G I  G  +     +    
Sbjct: 442 EAFKAGYKNIAEI---SKERLRRAGKKIKEEQSAQLDFNENGGIDTGFKVFKLDSSNIKR 498

Query: 316 VCAD 319
             AD
Sbjct: 499 WEAD 502


>gi|71893774|ref|YP_279220.1| putative type III restriction-modification system: methylase
           [Mycoplasma hyopneumoniae J]
          Length = 552

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 57/153 (37%), Gaps = 10/153 (6%)

Query: 96  LKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
           ++ NG ++  G     ++     ++     + D  WR +    ++  +        +++ 
Sbjct: 294 IEYNGKIYYAGGSQEKWQA----RHQGNRAVKDWRWRWARKKLDWGIKNG-----FIVFK 344

Query: 156 SPSPKAKGYTF-NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
           +    +K Y F + +  K            L     G++  +N    K+    KP  L+ 
Sbjct: 345 NEKVFSKQYQFVDNNNQKIERVSKFSNLILLAQGTEGTQEQKNIFSTKVFDHPKPIELIK 404

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
            ++         ILD F GSGT+G    +L R 
Sbjct: 405 YLINIHPNKNAKILDFFAGSGTTGHAVWELNRQ 437



 Score = 43.4 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 52/140 (37%), Gaps = 21/140 (15%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP----------------AKSVDLIF 44
           + +  +L+   N+N+  + ++ +I G +   L+ L                 A   D+I+
Sbjct: 67  LEKDENLSFKSNENN--QNQNTLIIGENYDALKNLLVLERERERERERERATAAGYDIIY 124

Query: 45  ADPPYNLQ---LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
            DPPYN Q     G     D   +      +    S   +       L   +++LK +G 
Sbjct: 125 IDPPYNTQASFNEGNQIANDKENILPSKFIYRDKYSRNGWLNLLNERLNLAKKLLKDDGI 184

Query: 102 LWVIGSYHNIFRIGTMLQNL 121
           ++V    +    +  ++  +
Sbjct: 185 IFVSIDDNQHGYLKVLMDEI 204


>gi|167760231|ref|ZP_02432358.1| hypothetical protein CLOSCI_02604 [Clostridium scindens ATCC 35704]
 gi|167662114|gb|EDS06244.1| hypothetical protein CLOSCI_02604 [Clostridium scindens ATCC 35704]
          Length = 957

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 76/230 (33%), Gaps = 18/230 (7%)

Query: 42  LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
           L++ADPPY         R  H L       +   +        +       RRV      
Sbjct: 288 LVYADPPYF---KEHYSRYYHVLNTLCLYDYPAMAINPQTHELSIGRYREDRRVSDFGKK 344

Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF--QNAHETLI-----W 154
              +G++     + T       W+   ++    N + +    +   +  ++ LI      
Sbjct: 345 AKALGAFET---LITKCATAGTWL---MISYSDNSIVDITDLQTLAEKQYDVLIEKVELS 398

Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP--TQKPEAL 212
            S   ++     +        ++     +  + +    + + +     +H    +KP  +
Sbjct: 399 HSKQGRSSISKVDEYIFICRPKEFVHDVNEKLLVVKELKPIVDNPAGFMHNYMARKPYNV 458

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +S I+         I DP FGSGT+   A KL R  IG ++      +  
Sbjct: 459 VSEIIKRFCPDNGCIYDPMFGSGTTIIEASKLGRKAIGTDINLLAYKLCK 508



 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 17/112 (15%)

Query: 35  LPAKSVDLIFADPPY------------NLQLNGQLYRPDHSLVD--AVTDSWDKFSSFEA 80
           LP +SVDLI  DPPY              ++ G     D SL D   V+D+  +  + + 
Sbjct: 735 LPNESVDLILTDPPYTDQVPYLEYNQLWYKVMGWQGFTDESLEDELVVSDAPSRNKNGDD 794

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIG---SYHNIFRIGTMLQNLNFWILNDI 129
           ++    A L      LK NG   +        +   I   +Q         I
Sbjct: 795 FNRVFEAILSRISPALKTNGYFIMFYHSFDLKSWSDILKTMQEHGLAYCGQI 846


>gi|295111386|emb|CBL28136.1| Adenine specific DNA methylase Mod [Synergistetes bacterium SGP1]
          Length = 574

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 8/77 (10%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIE 252
           DG     T KP  L+  +L  +  P  IILD F GSGT+      +       R FI +E
Sbjct: 369 DGRATFDTPKPRRLVEFVLKIAGDPDSIILDSFAGSGTTAHAVLNMNKADGGRRRFILVE 428

Query: 253 MKQDYID-IATKRIASV 268
           M  DY + I  +R+  V
Sbjct: 429 M-MDYAESITAERVRRV 444



 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 65/207 (31%), Gaps = 16/207 (7%)

Query: 2   SQKNSLAINENQNSI--FEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQ 56
            Q+    + E + ++   E  + II+G+++  L+ L       V  ++ DPPYN    G 
Sbjct: 16  HQEVPFRVLEKKYTVGADESDNLIIRGDNLEALKALLPRYEGRVKCVYIDPPYNTGNEGW 75

Query: 57  LY-------RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
           +Y       R    L   V    +  S  + +       L    R+L P G +++     
Sbjct: 76  VYNDNVNDPRIRRWLGAVVGKEGEDLSRHDKWLCMMYPRLRLLHRLLSPAGAIFISIDDA 135

Query: 110 NIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
               +  +   +         +  +         +   N  E ++  S  P   G+  N 
Sbjct: 136 EYSNLKAVCDEIFGPDCFVSNISWQRTYSTRNDSKGIVNEVEHILTYSRRP---GWNPNK 192

Query: 169 DALKAANEDVQMRSDWLIPICSGSERL 195
                  +      D  + +       
Sbjct: 193 LPRTEEMDAKYRNPDNDVALWRSDNPF 219


>gi|307701299|ref|ZP_07638320.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
 gi|307613460|gb|EFN92708.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
          Length = 454

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 3/81 (3%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +  T KP  LL+ +L +++ PGD++LD F GSG+ G  A    R FI +++ + +  +  
Sbjct: 363 IFETPKPVDLLAVLLEAASAPGDLVLDFFAGSGSFGVAAADGLRRFILVQLPEPFSPLHE 422

Query: 263 KRIASVQPLGNIELTVLTGKR 283
            R    + LG   +  LT +R
Sbjct: 423 AR---ARDLGFDTIADLTAER 440



 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 16/119 (13%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99
           V +I+ DPPYN                A  D+ DK    +A+ A  +  L+  R  L+ +
Sbjct: 92  VKMIYIDPPYNTGNT-----------FAYHDARDK----DAWAAMMQPRLVLAREALRDD 136

Query: 100 GTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
           G +++    +    +  +   +             SN      G      HE ++  + 
Sbjct: 137 GLVFISIDINEFAELKALCDRVFGAENFVANFVWVSNLKGRQLGNGPAGTHEYILCYAR 195


>gi|306817921|ref|ZP_07451659.1| type III restriction-modification system methylation subunit
           [Mobiluncus mulieris ATCC 35239]
 gi|304649264|gb|EFM46551.1| type III restriction-modification system methylation subunit
           [Mobiluncus mulieris ATCC 35239]
          Length = 475

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 3/81 (3%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +  T KP  LL+ +L +++ PGD++LD F GSG+ G  A    R FI +++ + +  +  
Sbjct: 384 IFETPKPVDLLAVLLEAASAPGDLVLDFFAGSGSFGVAAADGLRRFILVQLPEPFSPLHE 443

Query: 263 KRIASVQPLGNIELTVLTGKR 283
            R    + LG   +  LT +R
Sbjct: 444 AR---ARDLGFDTIADLTAER 461



 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 16/119 (13%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99
           V +I+ DPPYN                A  D+ DK    +A+ A  +  L+  R  L+ +
Sbjct: 113 VKMIYIDPPYNTGNT-----------FAYHDARDK----DAWAAMMQPRLVLAREALRDD 157

Query: 100 GTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
           G +++    +    +  +   +             SN      G      HE ++  + 
Sbjct: 158 GLVFISIDINEFAELKALCDRVFGAENFVANFVWVSNLKGRQLGNGPAGTHEYILCYAR 216


>gi|269977564|ref|ZP_06184531.1| DNA methylase [Mobiluncus mulieris 28-1]
 gi|269934167|gb|EEZ90734.1| DNA methylase [Mobiluncus mulieris 28-1]
          Length = 454

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 3/81 (3%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +  T KP  LL+ +L +++ PGD++LD F GSG+ G  A    R FI +++ + +  +  
Sbjct: 363 IFETPKPVDLLAVLLEAASAPGDLVLDFFAGSGSFGVAAADGLRRFILVQLPEPFSPLHE 422

Query: 263 KRIASVQPLGNIELTVLTGKR 283
            R    + LG   +  LT +R
Sbjct: 423 AR---ARDLGFDTIADLTAER 440



 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 40/119 (33%), Gaps = 16/119 (13%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99
           V +I+ DPPYN                  T ++    + +A+ A  +  L+  R  L+ +
Sbjct: 92  VKMIYIDPPYNTG---------------NTFAYHDARNKDAWAAMMQPRLVLAREALRDD 136

Query: 100 GTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
           G +++    +    +  +   +             SN      G      HE ++  + 
Sbjct: 137 GLIFISIDINEFAELKALCDRVFGAENFVANFVWVSNLKGRQLGNGPAGTHEYILCYAR 195


>gi|227874635|ref|ZP_03992798.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Mobiluncus mulieris ATCC 35243]
 gi|227844844|gb|EEJ54990.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Mobiluncus mulieris ATCC 35243]
          Length = 458

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 3/81 (3%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +  T KP  LL+ +L +++ PGD++LD F GSG+ G  A    R FI +++ + +  +  
Sbjct: 367 IFETPKPVDLLAVLLEAASAPGDLVLDFFAGSGSFGVAAADGLRRFILVQLPEPFSPLHE 426

Query: 263 KRIASVQPLGNIELTVLTGKR 283
            R    + LG   +  LT +R
Sbjct: 427 AR---ARDLGFDTIADLTAER 444



 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 16/119 (13%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99
           V +I+ DPPYN                A  D+ DK    +A+ A  +  L+  R  L+ +
Sbjct: 96  VKMIYIDPPYNTGNT-----------FAYHDARDK----DAWAAMMQPRLVLAREALRDD 140

Query: 100 GTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
           G +++    +    + T+   +             SN      G      HE ++  + 
Sbjct: 141 GLIFISIDINEFAELKTLCDRVFGAENFVANFVWVSNLKGRQLGNGPAGTHEYILCYAR 199


>gi|253687248|ref|YP_003016438.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251753826|gb|ACT11902.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 586

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 72/189 (38%), Gaps = 13/189 (6%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPD-------HSLVDAVTD 70
           + I++G+++  L+ L       V  I+ DPPYN    G +Y  +         L + V  
Sbjct: 39  NIIVQGDNLHALKALLPRYAGQVKCIYIDPPYNTGNEGWIYNDNVNSPEIRKWLGEVVGK 98

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
             +     + +       L+  ++ L+ +G ++V    + I  + ++++ + F   N+I 
Sbjct: 99  EGETLDRHDRWLCMMYPRLVLLKQFLRNDGVIFVSIDDNEIGNLQSLMREI-FGASNEIA 157

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPK--AKGYTFNYDALKAANEDVQMRSDWLIPI 188
                       +     HE ++  S +     K  T         +E ++  ++     
Sbjct: 158 TIVWGKGKKGDAKLVSVTHEYIVAFSKNKDFLKKQKTRWRRKKPGVDEVLEHYNNLRKKY 217

Query: 189 CSGSERLRN 197
            +   ++RN
Sbjct: 218 LNDHVKIRN 226



 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR------SFIGIEM 253
           G    P  K  A+++ ++   ++PGD++LD F GSGT+     +L +      +FI IEM
Sbjct: 354 GPGAFPFPKDSAVVADLIGMVSQPGDLVLDSFAGSGTTAHAVFQLNQGKKNPINFILIEM 413

Query: 254 KQD-YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL 292
             +  I+   +RI             LTGK+  P      
Sbjct: 414 DNNVAINKTRERIRKAIDG----YIPLTGKKRSPVAGLGS 449


>gi|317495340|ref|ZP_07953710.1| DNA methylase [Gemella moribillum M424]
 gi|316914762|gb|EFV36238.1| DNA methylase [Gemella moribillum M424]
          Length = 295

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 62/173 (35%), Gaps = 25/173 (14%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRP 60
                  EN+NS   +    I G+++  L+ L    ++ V  I+ DPPYN   +G +Y P
Sbjct: 83  TEHNNKEENKNSENLY----IIGDNLDALKHLLKSYSRKVKCIYIDPPYNTGSDGFVY-P 137

Query: 61  DHSLVDAVTDSWDKFSSFEA---------------YDAFTRAWLLACRRVLKPNGTLWVI 105
           D+   D++T S       E                +  F    L+  R +L   G +++ 
Sbjct: 138 DNFKFDSMTLSNKMGIDEEEAERIIDMRGKSTHSAWLTFMYPRLILARELLTDEGIIFIS 197

Query: 106 GSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
              +    +  +   +         +   +NP     G    N HE L+    
Sbjct: 198 IDDNEQSNLKIVCDEIFGEENFAGKITVVNNPRGRDYGG-IANMHEYLLVYKK 249


>gi|223038997|ref|ZP_03609288.1| DNA methylase N-4/N-6 domain protein [Campylobacter rectus RM3267]
 gi|222879636|gb|EEF14726.1| DNA methylase N-4/N-6 domain protein [Campylobacter rectus RM3267]
          Length = 260

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 5/95 (5%)

Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
             N D+   S W I     S + +N       P Q P  LL R     TK G+ + +PF 
Sbjct: 11  WKNCDINTDSLWFIAERDKSGKHKNIYHGNFIP-QIPNQLLRR----YTKRGEFVFEPFM 65

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           GSGT+    + L R +IG ++    +D   + + +
Sbjct: 66  GSGTTLFECENLDRKYIGFDINPLMLDYVRQSMQN 100


>gi|241889993|ref|ZP_04777291.1| modification methylase RsrI [Gemella haemolysans ATCC 10379]
 gi|329767391|ref|ZP_08258916.1| hypothetical protein HMPREF0428_00613 [Gemella haemolysans M341]
 gi|241863615|gb|EER67999.1| modification methylase RsrI [Gemella haemolysans ATCC 10379]
 gi|328836080|gb|EGF85771.1| hypothetical protein HMPREF0428_00613 [Gemella haemolysans M341]
          Length = 84

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ--LNGQLYRPDHSLVDAVTDSWDKFSSFE 79
          +II G  I  L KL + +VDLI  DPPYN+   +NG+         +    +      F 
Sbjct: 3  EIINGECIEELRKLDSSTVDLIITDPPYNIANFMNGRDTNLQKMRSNFFGAAGWDDLDFN 62

Query: 80 AYDAFTRAWLLA 91
           +    R +L  
Sbjct: 63 DWKDHMRLFLKN 74


>gi|317486494|ref|ZP_07945319.1| hypothetical protein HMPREF0179_02677 [Bilophila wadsworthia 3_1_6]
 gi|316922297|gb|EFV43558.1| hypothetical protein HMPREF0179_02677 [Bilophila wadsworthia 3_1_6]
          Length = 367

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G   + T  P     RIL    +  D++LDPF G GT+   A+ L  + + ++     +
Sbjct: 10  NGLCPYFTMFPLEFPLRILKGRARKEDLVLDPFCGRGTTNFAARLLGLNSLAVDSSPVAV 69

Query: 259 DIATKRIASV 268
            I   ++ +V
Sbjct: 70  AITAAKLVTV 79


>gi|297565032|ref|YP_003684004.1| adenine-specific DNA-methyltransferase [Meiothermus silvanus DSM
           9946]
 gi|296849481|gb|ADH62496.1| Site-specific DNA-methyltransferase (adenine-specific) [Meiothermus
           silvanus DSM 9946]
          Length = 629

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 59/174 (33%), Gaps = 27/174 (15%)

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA----SPSPKAKGYTFNYDALKAANE 176
           ++     +I   ++      R R  QN  E  +W                +  A   A+ 
Sbjct: 306 IHPKTGKEIWPSRTAVWRYSRERHEQNVREGRVWWGLNQENETPRYKRYLSEVAGVVADT 365

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG--DIILDPFFGS 234
             +              +    +      T KP  LL R+L  ST+P   DI+LD F GS
Sbjct: 366 WWEHTDVGHTDEAKKEFKSLFGEDADAFDTPKPVRLLKRLLQLSTEPDAGDIVLDFFAGS 425

Query: 235 GTSGAVAKKL------RRSFIGIEM-----KQDY----------IDIATKRIAS 267
           GT G    ++       R F+ +++       +Y          +  A +RI S
Sbjct: 426 GTLGQAVLEMNQEDGGNRRFVLVQLPEPTRNPNYPTISSVTRGRVQKAAERIRS 479



 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 18/119 (15%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + II+G+++ VL+ L       V LI+ DPPYN   +          V        + S 
Sbjct: 91  NVIIEGDNLEVLKLLQQAYHGKVKLIYIDPPYNTGNDFVYPDDFREGVRQYLRFTGQLSE 150

Query: 78  ---------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
                             + +     L   R +L+ +G ++V    H +  +  ++  +
Sbjct: 151 DGVRLTTAPEEGGRIHSRWLSMMYPRLQLARSLLRDDGVIFVSIDDHELHNLRAIMDEI 209


>gi|127512192|ref|YP_001093389.1| DNA methylase N-4/N-6 domain-containing protein [Shewanella loihica
           PV-4]
 gi|126637487|gb|ABO23130.1| DNA methylase N-4/N-6 domain protein [Shewanella loihica PV-4]
          Length = 719

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 11/137 (8%)

Query: 21  DKIIKGNSISVLEKL---PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
             +I G +  VL+ L       +D I+ DPPYN       Y  D+          D    
Sbjct: 138 HSVINGENYHVLKALTYTHRGKIDAIYIDPPYNSGAKDWKYNNDYV-------EGDDLYR 190

Query: 78  FEAYDAFTRAWLLACRRVLKP-NGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
              + A     L   + +L P +  L V        R+G +L+ +       +V    NP
Sbjct: 191 HSKWLAMMERRLFVAKELLNPADSVLIVTIDEKEYLRLGLLLEQVFPEAKIQMVSSVINP 250

Query: 137 MPNFRGRRFQNAHETLI 153
               R  +F    E + 
Sbjct: 251 FGVARAGQFARVDEYIF 267



 Score = 42.7 bits (99), Expect = 0.086,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 38/100 (38%), Gaps = 12/100 (12%)

Query: 201 EKLHPTQKPEALLSRILV--SSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIE 252
            +  P  K    +   L    S KP  IILD F GSGT+     +L       R  I + 
Sbjct: 472 RRKFPYPKSLYAVEDALRFFVSDKPDAIILDFFSGSGTTAHAVMRLNRQDGGRRQCISVT 531

Query: 253 MKQDYIDIATK-RIASVQPLGNIELTVLT--GKRTEPRVA 289
             +   D     R   ++P G+ E          T+PRVA
Sbjct: 532 NNEVAADEQKALREQGLRP-GDAEWEKYGICDYITKPRVA 570


>gi|323961306|gb|EGB56918.1| hypothetical protein ERGG_02257 [Escherichia coli H489]
          Length = 411

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT-KRI 265
           Q    L+  +L    K GD +LDPF GSGT    A ++  + +G+++    + +A    +
Sbjct: 49  QFSPQLIEYLLSKHCKKGDYVLDPFCGSGTVLREAARIGINALGMDVNPAAVCLAKVSEL 108

Query: 266 ASVQP 270
             V+P
Sbjct: 109 TGVEP 113


>gi|167851675|ref|ZP_02477183.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia pseudomallei B7210]
          Length = 663

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 57/162 (35%), Gaps = 17/162 (10%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLN------GQLYRPDHSLVDAVTD 70
           ++ +I+G+++ VL+ L    A  V LI+ DPPYN   +       Q    ++  + A T+
Sbjct: 98  QNLMIEGDNLEVLKLLQKSYAGKVKLIYIDPPYNTGKDFVYPDSYQDSIQNYLELTAQTE 157

Query: 71  SWDKFSSFEA--------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
           S  + SS           +       L+  + +L  +G            R+  +   + 
Sbjct: 158 SGRRVSSNTEASGRFHTNWLGMLYPRLILAKSLLSTDGLFICSIDDCEAPRLRMLCDEIF 217

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
                       +        + +  HE ++  +    A  +
Sbjct: 218 GEENFLAQLTWRSDGNFDNQAKVKVCHEYVVMYARDLDAFPH 259



 Score = 42.3 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 6/49 (12%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFI 249
            KP  LLS ++        I LD F GSGT G    +        R F+
Sbjct: 416 PKPVELLSYLIQMVESRDGIFLDFFAGSGTLGHAVLRQNALDGGKRRFV 464


>gi|167617396|ref|ZP_02386027.1| type III DNA modification methyltransferase [Burkholderia
           thailandensis Bt4]
          Length = 676

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 54/153 (35%), Gaps = 21/153 (13%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRP---------------- 60
           ++ +I+G ++ VL+ L    A    L++ DPPYN   +                      
Sbjct: 101 RNLMIEGENLEVLKLLQKSYAGRAKLVYIDPPYNTGKDFVYSDNFTDSLRHYLELTGQTT 160

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           D   + + TD+  +F +   +       L   R +L  +G + V    H    +  +++ 
Sbjct: 161 DGKRISSHTDASGRFHT--DWLNMIYPRLKLARDLLADDGVIAVHIDEHEQHALVLVMRE 218

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           +        V       P    R     HE+++
Sbjct: 219 IFGEDNELGVAVWDKRNPKGDARGIAYQHESIV 251



 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 53/171 (30%), Gaps = 11/171 (6%)

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF-RGRRFQNA 148
            A    +  +G ++ + S            +   + +  +      P P   RG R   A
Sbjct: 311 EAMYDRISADGRVYRLVS-MAWPNKKKAPDD---YFVPLVHPVTGKPCPVPERGWRNPPA 366

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
               +      +               ++    +   +    GS+    K         K
Sbjct: 367 TMQALIDKGLVEFGADETTQPQRIYFLDENMYENVPSVLPFGGSDDALMKSLGIPFDQPK 426

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEM 253
           P    + I+   T   D+I+D F GSGT+G     L       R ++ +++
Sbjct: 427 PVEFAASIIGWCTDGDDLIVDFFGGSGTTGHAVMALNAADGGNRRYVLVQL 477


>gi|146338458|ref|YP_001203506.1| putative adenine-specific DNA-methyltransferase [Bradyrhizobium sp.
           ORS278]
 gi|146191264|emb|CAL75269.1| putative Site-specific DNA-methyltransferase (adenine-specific)
           [Bradyrhizobium sp. ORS278]
          Length = 733

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 11/140 (7%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
             +IK ++   L+ L      SVD+I+ DPPYN          D    +   D  D F  
Sbjct: 132 HTLIKADNFHALQLLLFCYPSSVDVIYIDPPYNSGAR------DWKYNNDYVDKTDTFRH 185

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            + + +  +  LL  + +LKP+G L V    + +  +G +L+++    L   V    NP 
Sbjct: 186 SK-WLSMMKKRLLIAKHLLKPDGVLIVTIDENELHHLGLLLEDVFESYLRHTVTIVINPK 244

Query: 138 PNFRGRRFQNAHETLIWASP 157
                R F    E  ++  P
Sbjct: 245 G-AGKRNFARTEEHALFCVP 263



 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 64/177 (36%), Gaps = 16/177 (9%)

Query: 159 PKAKGYTFNYDALKAANE-----DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL 213
           P  KG+T NY   K+  +         R D      S   ++  +      P        
Sbjct: 431 PTTKGWTLNYWIPKSKTKNVKTVWWHARHDAGTHGTSMLHKILGRRDAFPFPKSLYATRD 490

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYIDIATK-RIA 266
           + + V  ++P  ++LD F GSGT+      L       R  I +   +    +A K R  
Sbjct: 491 ALLTVIGSRPNALVLDFFAGSGTTLHATALLNAQLGGSRRCILVSNNEPGATVAGKLRRK 550

Query: 267 SVQP-LGNIELTVLTGKRTEPRVAFNLLVER--GLIQPGQILTNAQGNISATVCADG 320
            + P   + E   +    T PR  F +  +R  G    G  L + +G+      +DG
Sbjct: 551 QIYPGDADYEAAGICESVTWPRCKFVINGKRDDGTELAGTYL-DIEGHEKNLRWSDG 606


>gi|83718634|ref|YP_440601.1| type III DNA modification methyltransferase [Burkholderia
           thailandensis E264]
 gi|83652459|gb|ABC36522.1| type III DNA modification methyltransferase [Burkholderia
           thailandensis E264]
          Length = 682

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 54/153 (35%), Gaps = 21/153 (13%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRP---------------- 60
           ++ +I+G ++ VL+ L    A    L++ DPPYN   +                      
Sbjct: 107 RNLMIEGENLEVLKLLQKSYAGRAKLVYIDPPYNTGKDFVYSDNFTDSLRHYLELTGQTT 166

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           D   + + TD+  +F +   +       L   R +L  +G + V    H    +  +++ 
Sbjct: 167 DGKRISSHTDASGRFHT--DWLNMIYPRLKLARDLLADDGVIAVHIDEHEQHALVLVMRE 224

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           +        V       P    R     HE+++
Sbjct: 225 IFGEDNELGVAVWDKRNPKGDARGIAYQHESIV 257



 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 53/171 (30%), Gaps = 11/171 (6%)

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF-RGRRFQNA 148
            A    +  +G ++ + S            +   + +  +      P P   RG R   A
Sbjct: 317 EAMYDRISADGRVYRLVS-MAWPNKKKAPDD---YFVPLVHPVTGKPCPVPERGWRNPPA 372

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
               +      +               ++    +   +    GS+    K         K
Sbjct: 373 TMQALIDKGLVEFGADETTQPQRIYFLDENMYENVPSVLPFGGSDDALMKSLGIPFDQPK 432

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEM 253
           P    + I+   T   D+I+D F GSGT+G     L       R ++ +++
Sbjct: 433 PVEFAASIIGWCTDGDDLIVDFFGGSGTTGHAVMALNAADGGNRRYVLVQL 483


>gi|148259749|ref|YP_001233876.1| hypothetical protein Acry_0737 [Acidiphilium cryptum JF-5]
 gi|146401430|gb|ABQ29957.1| hypothetical protein Acry_0737 [Acidiphilium cryptum JF-5]
          Length = 407

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 1/87 (1%)

Query: 183 DWLIP-ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
           D+ I    +  +R  +   E  +       L +  +   T PGD++ DPF G GT+   A
Sbjct: 40  DYFINAFWTSGQRQAHAIHEISYRACFKPQLPAFFISRLTAPGDLVFDPFMGRGTTPVQA 99

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASV 268
             ++R   G ++      +   R+  +
Sbjct: 100 ALMQRRAAGNDINPLAALMCRPRLRPI 126



 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 47/133 (35%), Gaps = 14/133 (10%)

Query: 35  LPAKSVDLIFADPPYNLQLNG---QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           L A+SV L+   PP+   +N       R   + +D    + D   S  A+    R  L  
Sbjct: 271 LAARSVALVVTSPPFLDVVNYAADNWLRCWFAGIDPGAVAIDLHRSEAAWTEMVRRVLAE 330

Query: 92  CRRVLKPNGTL-WVIGSYH----------NIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
             R+++P G + + +G                  G   Q L   +      + SN     
Sbjct: 331 LARLVRPGGHVAFEVGEVRRGRVLLEKRVWQAADGLPFQRLGVLVNLQTFTKTSNCWGVS 390

Query: 141 RGRRFQNAHETLI 153
            G R  N++  ++
Sbjct: 391 NGTRGTNSNRIVM 403


>gi|308050408|ref|YP_003913974.1| DNA methylase N-4/N-6 domain protein [Ferrimonas balearica DSM
           9799]
 gi|307632598|gb|ADN76900.1| DNA methylase N-4/N-6 domain protein [Ferrimonas balearica DSM
           9799]
          Length = 242

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 73/222 (32%), Gaps = 37/222 (16%)

Query: 29  ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
           ++ L+ L   SVDL+  + P      G     +     +V + W      + Y       
Sbjct: 12  VAWLKSLGRHSVDLVVTELP--TPRRGPAIATELKNARSVRNQWFAIFPNDPYPGL---- 65

Query: 89  LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
                RVLKPN   ++      +F +  + +   F     +VW +        GR ++N 
Sbjct: 66  FEQLYRVLKPNSHFYLFCRQEALFVVKPLAEAAGFRFQTVLVWDQQR---KKTGRNYRNQ 122

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
              +       +A       D L  A E+                              K
Sbjct: 123 LGWICLFEKGQRAVADPSQSDLLSYALENQH----------------------------K 154

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           P ALL+ ++  S+ PG +++DPF         A    R F G
Sbjct: 155 PHALLALLMAQSSAPGQLVIDPFCLDAQIAQSALTEGRRFCG 196


>gi|284097271|ref|ZP_06385414.1| DNA modification methylase [Candidatus Poribacteria sp. WGA-A3]
 gi|283831218|gb|EFC35185.1| DNA modification methylase [Candidatus Poribacteria sp. WGA-A3]
          Length = 109

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 35/111 (31%), Gaps = 22/111 (19%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
             G+ + VL      S DLI   PPY      + Y   H                + Y  
Sbjct: 9   YLGDCLKVLADFDTDSFDLIITSPPYA-DRRSKTYGGIH---------------PDQYVD 52

Query: 84  FTRAWLLACRRVLKPNGTLW------VIGSYHNIFRIGTMLQNLNFWILND 128
           +         RVLKP+GT         +    + + I  +L+     +  D
Sbjct: 53  WFMPRAAEFLRVLKPSGTFVLNIKEQAVDGERHTYVIELILEMKKARVAVD 103


>gi|261492361|ref|ZP_05988922.1| methyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261494471|ref|ZP_05990957.1| methyltransferase [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261309855|gb|EEY11072.1| methyltransferase [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261311965|gb|EEY13107.1| methyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 610

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/306 (12%), Positives = 89/306 (29%), Gaps = 56/306 (18%)

Query: 17  FEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
              ++  I+G ++ VL+ L      SV +I+ DPPYN    G  +  + S  D   D  +
Sbjct: 33  ENTQNIFIEGENLDVLKALQKSYFNSVKMIYIDPPYNT---GNDFIYNDSFADTKADYAE 89

Query: 74  KFSSFEA---------------------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
           K    +                      +       L   + +L+ +G +++    +   
Sbjct: 90  KVGDVDEHGKLKRAFVRNSKENGHYHSNWLNMMLPRLHLAKNLLRDDGVIFISIDDNEQA 149

Query: 113 RIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN---- 167
           ++  +   +        I+  ++NP      +    +++  I  + + +   +  N    
Sbjct: 150 QLKLLCDEVFGEENFVAILSVENNPKGRKNSKFISVSNDFCIIYAKNKEMGKFVENIPKN 209

Query: 168 --YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
                       V      ++   +   +         H +     L   I++      D
Sbjct: 210 AKDMCQDENGHYVHASGKRVLVGENKFNQPVTDFTSDKHYSVYFNKLDDDIILKFEDSLD 269

Query: 226 IILDPFFGSGTSGAVAKKLRR------SFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
                           K L         +I      ++++    R   ++   +  L   
Sbjct: 270 D---------------KDLNLINQGYVRYISF-FDDEFVENTYTRFKFLELFEDESLEFT 313

Query: 280 TGKRTE 285
             K  E
Sbjct: 314 EDKIYE 319


>gi|237740846|ref|ZP_04571327.1| type III restriction-modification system methylation subunit
           [Fusobacterium sp. 4_1_13]
 gi|229431143|gb|EEO41355.1| type III restriction-modification system methylation subunit
           [Fusobacterium sp. 4_1_13]
          Length = 532

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 20/124 (16%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR---- 245
           +G+ +++    +K+    KP  L+    +  T    IILD F GSGT+     +L     
Sbjct: 277 NGTAQIKFLFNKKVFSNPKPIELIKDFFILGTNKNSIILDFFSGSGTTAHSVMQLNAEDG 336

Query: 246 --RSFIGI-------EMKQDY-------IDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
             R +I +       E  + Y        +I  +RI         + ++    R +  V 
Sbjct: 337 GTRKYIMVQLPELCDENSEAYKAGYNNICEIGKQRIRRAGEKIKSDESLPIENREKLDVG 396

Query: 290 FNLL 293
           F + 
Sbjct: 397 FKVF 400



 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/95 (10%), Positives = 28/95 (29%), Gaps = 15/95 (15%)

Query: 42  LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF---------------SSFEAYDAFTR 86
           +I+ DPPYN   +          ++   +   +                     + +   
Sbjct: 1   MIYIDPPYNTGKDFVYKDNFKDNIENYKEITGQINKEGIKLTTNTDSDGRYHSKWLSMMY 60

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
             L   R +L  +G +++    +    +  +   +
Sbjct: 61  PRLKLARNLLTDDGVIFISIDDNEQANLKKICDEI 95


>gi|256372167|ref|YP_003109991.1| DNA methylase N-4/N-6 domain protein [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256008751|gb|ACU54318.1| DNA methylase N-4/N-6 domain protein [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 651

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 60/154 (38%), Gaps = 22/154 (14%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRP---------------- 60
           ++ +I+G+++ VL+ L    A  V LI+ DPPYN   +                      
Sbjct: 98  QNLVIEGDNLEVLKLLQKSYAGKVKLIYIDPPYNTGKDFVYPDNFQDSIKNYLELTGQVE 157

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
               + + T++  +F +   +       L   R +L+ +G L++      I  + T+   
Sbjct: 158 GGRKISSNTEASGRFHT--DWLNMMYPRLKLARNLLREDGVLFISIDDGEIGHLRTLCDE 215

Query: 121 L-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           +        ++ R++     F  +R  +  + ++
Sbjct: 216 VFGAENFCGVIKRRAARKTAFLRKRMTDMCDYVV 249



 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRI-LVSSTKPGDIILDPFFGSGTSGA------VAK 242
            GSE L+      +    KP  L+  +   +  K  +++LD F GSGT+G        A 
Sbjct: 379 KGSEELQQLFEATVFNNPKPRGLIEYLASAAGVKEKELVLDFFAGSGTTGHAVMAQNAAD 438

Query: 243 KLRRSFIGIEM 253
              R +I +++
Sbjct: 439 GGNRRYILVQL 449


>gi|210134458|ref|YP_002300897.1| type III R-M system methyltransferase [Helicobacter pylori P12]
 gi|210132426|gb|ACJ07417.1| type III R-M system methyltransferase [Helicobacter pylori P12]
          Length = 390

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 53/140 (37%), Gaps = 17/140 (12%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
             K+    ++  L+++  +S+  I+ DPPYN + +   Y   H+                
Sbjct: 1   MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYEDAHA---------------- 44

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y+ + +  L+  + VLK +G +++    + +  +  +   +     N +    +     
Sbjct: 45  DYEKWIKEHLILAKAVLKQSGCIFISIDDNKMTEVKIIANEIFGT-RNFLGTFITKQATR 103

Query: 140 FRGRRFQNAHETLIWASPSP 159
              +     HE ++  + + 
Sbjct: 104 SNAKHINITHEYVLSYAKNK 123



 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 11/107 (10%)

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           L + +         +    LK + ++     D+      G++ L     + L  T KP A
Sbjct: 235 LYYQNRLIFKNNRPYEKYYLKESQDNCLSVLDFY--SRQGTKDLEKLGLKGLFKTPKPVA 292

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           L+  +L+ ST    IILD F GSGT+             IE+ +DY 
Sbjct: 293 LIKYLLLCSTPKDSIILDFFAGSGTTAQAV---------IEVNKDYY 330


>gi|158424882|ref|YP_001526174.1| DNA methylase [Azorhizobium caulinodans ORS 571]
 gi|158331771|dbj|BAF89256.1| DNA methylase [Azorhizobium caulinodans ORS 571]
          Length = 576

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 40/108 (37%), Gaps = 9/108 (8%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPD------HSLVDAVTDS 71
           + ++ G+++  L+ L       VD ++ DPPYN   +   Y            +D+   +
Sbjct: 40  NLVVHGDNLHALKALLPLYAGKVDCVYIDPPYNTGKSDWSYNDKVNSPVIQEWLDSNPIT 99

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
            D     + +       L   R ++KP   ++     + +     +L 
Sbjct: 100 VDDTLRHDKWACMMWPRLQLLRDLMKPGAVIFASIDDNEVALFKHLLH 147



 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 6/76 (7%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIE 252
           + ++     K   L+  +L  +  P  ++LD F GSGT+     KL       R FI +E
Sbjct: 351 ESKQAFKNPKTYTLIEWLLSYTAGPDAVVLDSFAGSGTTAQAVMKLNERDGGNRKFILVE 410

Query: 253 MKQDYIDIATKRIASV 268
           M+    ++  +R+  +
Sbjct: 411 MEDYADELTAERVRRL 426


>gi|21232872|ref|NP_638789.1| hypothetical protein XCC3443 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767057|ref|YP_241819.1| hypothetical protein XC_0721 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21114702|gb|AAM42713.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66572389|gb|AAY47799.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 354

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%)

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           +   +   + PG  + DPF G G++   A    R   G+E+      +A +R+ 
Sbjct: 42  MRPFVRHFSAPGQQVFDPFCGFGSTLLAAALEGRQAHGMEVDPARAVVARERLR 95


>gi|113477117|ref|YP_723178.1| ParB-like nuclease [Trichodesmium erythraeum IMS101]
 gi|110168165|gb|ABG52705.1| ParB-like nuclease [Trichodesmium erythraeum IMS101]
          Length = 419

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 61/200 (30%), Gaps = 50/200 (25%)

Query: 42  LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
           L FADPPYN  +                  WD       +  +   WL+      K +  
Sbjct: 270 LAFADPPYNCGIA----------------EWD------FHFKWKHDWLIN-----KADLV 302

Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
           L   G       +   L+         I     N M   +G      H   +        
Sbjct: 303 LVTPGD----ESLAGFLKKTEMPYRCTIAHWIKNGM--SKGAMGYGNHILGLVFCKESTP 356

Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
              T                        +G  +L ++  E  HP +KP   L   +   T
Sbjct: 357 YKVT----------------GVRNQSFSTGVIKL-DETNETSHPGRKPLDFLVTWIEKLT 399

Query: 222 KPGDIILDPFFGSGTSGAVA 241
           KPGD I+DPF GSGT+   A
Sbjct: 400 KPGDFIIDPFLGSGTTLFAA 419


>gi|307566444|ref|ZP_07628879.1| DNA (cytosine-5-)-methyltransferase [Prevotella amnii CRIS 21A-A]
 gi|307344869|gb|EFN90271.1| DNA (cytosine-5-)-methyltransferase [Prevotella amnii CRIS 21A-A]
          Length = 634

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 73/230 (31%), Gaps = 31/230 (13%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQLN-----------------GQLYRPDHS 63
           I+G+++ VL+ L       V +I+ DPPYN   +                       +  
Sbjct: 105 IEGDNLRVLKLLQKSYMGKVKMIYIDPPYNTGNDFVYHDDFKTSLADEELAAGNIDEEGL 164

Query: 64  LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-N 122
                 D   +F S   + +   + LL  R +L  +G +++    H +  +  +   +  
Sbjct: 165 RYRKNLDGNGRFHS--DWCSMMYSRLLVVRSLLTEDGVIFISIDDHEVHNLRKICDEVFG 222

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY----TFNYDALKAANEDV 178
                  +  +    P    +   N+H+ ++  +   +               + +N D 
Sbjct: 223 ASNFVAELVWERAFAPKNDAKYISNSHDYILMYAKEIQKFKIGRLPRTEEANARYSNPDN 282

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQK----PEALLSRILVSSTKPG 224
             R  W     S        D     P+ K    P A   R+  ++ +  
Sbjct: 283 DPRGVWTSSDISVKTYNAACDYPITTPSGKIVEPPAARCWRLSRNAFRER 332



 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 21/104 (20%)

Query: 199 DGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIG- 250
           + + +    KP  LL R++ +++     I+LD F GS T+     +          FI  
Sbjct: 388 EDKGVFDGPKPVRLLKRLITLANLDDKSIVLDFFSGSATTAHALMQYNAEKEKHCKFICA 447

Query: 251 --IEMKQD--------YI---DIATKRIASVQPLGNIELTVLTG 281
             IE   +        Y    +IA +RI         E  + T 
Sbjct: 448 QLIEDTPEESPARKSGYATIPEIAKERIRRAGKKIKEETPLTTQ 491


>gi|169832321|ref|YP_001718303.1| DNA methylase N-4/N-6 domain-containing protein [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169639165|gb|ACA60671.1| DNA methylase N-4/N-6 domain protein [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 371

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 4/68 (5%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           Q P  L+ R     TK G++++DPF GSGT+    ++L R  +G+E+    +  A + + 
Sbjct: 155 QIPHQLMLR----YTKKGELVVDPFLGSGTTLIECRRLGRHGLGVELNPKTLHKARELVE 210

Query: 267 SVQPLGNI 274
           + +   N+
Sbjct: 211 AEENRHNV 218


>gi|260774789|ref|ZP_05883691.1| site-specific DNA-methyltransferase (adenine-specific) [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260609214|gb|EEX35369.1| site-specific DNA-methyltransferase (adenine-specific) [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 592

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 68/209 (32%), Gaps = 23/209 (11%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPD-------HSLVDAVTD 70
           + I++G+++  L+ L       V  I+ DPPYN    G +Y  +         L + V  
Sbjct: 39  NLIVQGDNLHALKALLPRYAGQVKCIYIDPPYNTGNEGWVYNDNVNSPEIRKWLGEVVGK 98

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
             +     + +       L+  ++ L  +G L V    +       +L  +     N I 
Sbjct: 99  EGETLDRHDRWLCMMYPRLVLLKQFLADDGVLLVSLDDNESANAKLILNEIFGE-GNFIA 157

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI---- 186
                       + F   HE +   + S   K         +   E      D  I    
Sbjct: 158 QLVWEKGRKNDAKFFSVGHEYIFVYAKSK--KYLKDKNVIWRKEKEGASEIYDEYIRLKG 215

Query: 187 ------PICSGSERLRNKDGEKLHPTQKP 209
                  +   + +L  K  +K HP++K 
Sbjct: 216 LFGDDFGLIEENLKLFYKGLDKNHPSKKH 244



 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSST--KPGDIILDPFFGSGTSGAVAKKL----- 244
              L N  GEK  P  K + ++S ++   T      +ILD F GSGT+     KL     
Sbjct: 353 VNELMNIFGEKPFPNPKDKDVISSLIKYVTGYDKNCLILDSFAGSGTTAHAVLKLNHQDN 412

Query: 245 -RRSFIGIEMKQDYID-IATKRIASV 268
             R+FI IEM     + +  KRI SV
Sbjct: 413 GNRNFITIEMDDSVANHVTIKRIKSV 438


>gi|269124154|ref|YP_003306731.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Streptobacillus moniliformis DSM 12112]
 gi|268315480|gb|ACZ01854.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Streptobacillus moniliformis DSM 12112]
          Length = 528

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 53/122 (43%), Gaps = 13/122 (10%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYR 59
           +  +  I  N++  + +   +++G+++  L+ L       +D+I+ DPPYN      +Y 
Sbjct: 68  EDETRKITANEDEAYNF---LLEGDNLHSLKLLEKTHKGKIDVIYIDPPYNTGNKDFIYD 124

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
                 D   D  D + S   + +F    LL  R +L   G +++    +   ++  +  
Sbjct: 125 ------DCFVDKTDGY-SHSKWLSFMEKRLLIARELLSDEGVIFISIDDNEQAQLRLLCD 177

Query: 120 NL 121
           ++
Sbjct: 178 SV 179



 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 9/122 (7%)

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
                     F             M  D       G   L+N  G+K+    K    L  
Sbjct: 295 KKKNGQWSVQFKQYLNMDGKTPRSMTMD-FGGTTDGDSELKNIFGKKIFNYPKSIKYLKT 353

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYI--DIATKRIAS 267
           +L +      I+LD F GSGT+G    +L       R +I     ++ I  ++  +R+ +
Sbjct: 354 LLSTINNKEVIVLDFFAGSGTTGHAVMQLNKEDGGNRKYILCTNNENNICEEVTYQRLKN 413

Query: 268 VQ 269
           +Q
Sbjct: 414 IQ 415


>gi|239622093|ref|ZP_04665124.1| adenine specific DNA methylase Mod [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239515284|gb|EEQ55151.1| adenine specific DNA methylase Mod [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 622

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 74/218 (33%), Gaps = 24/218 (11%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLN---GQLYRPDH 62
           + E        ++  I+G+++  L+ L       V LI+ DPPYN   +      +   H
Sbjct: 72  VKERSKDWDTTRNLYIEGDNLDALKLLRENYAGKVKLIYIDPPYNTGHDFVYDDDFSQTH 131

Query: 63  SLVDAVTDSWDK-----FSSFEAYDAFTRAW-------LLACRRVLKPNGTLWVIGSYHN 110
              +A +  +++      ++ E+   F   W       LL  R +   +G +++    + 
Sbjct: 132 DEFNAESGEYNEEGGRLVANPESNGRFHSDWCSMIYPRLLLARDLFTQDGAIFISIDDNE 191

Query: 111 IFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
              +  +   +       D +  +    P    + F  +H+ ++  + +           
Sbjct: 192 DKNLKNICDEIFGASNFVDTIIWQKRYSPQNAVQWFSESHDYILVYAKNKSQWFPNLLKR 251

Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
           + +         +D       G  +  N   +  H T+
Sbjct: 252 SDEMNARYTNRDND-----PRGPWKPENSTAQGGHGTK 284



 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 30/136 (22%)

Query: 188 ICSGSERLRNKDGEKL----------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           I   +E   N++G+K             T KP  L+ RIL  ++    +ILD F GS T 
Sbjct: 350 IWPYTEVGHNQEGKKELKALFPEEVPFDTPKPTRLMKRILDIASDKDSLILDFFSGSATM 409

Query: 238 GAVAKKLR------RSFIGI--------------EMKQDYIDIATKRIASVQPLGNIELT 277
           G    +        R FI +              E+ ++ I  A ++I S     N +LT
Sbjct: 410 GEAVIQENADDEGQRKFILVQLPEETTGQYSTLTEIGEERIRRAGEKIKSEIEAENAQLT 469

Query: 278 VLTGKRTEPRVAFNLL 293
           +    +  P + F +L
Sbjct: 470 LDGTPKKVPDIGFRVL 485


>gi|188990148|ref|YP_001902158.1| putative methyltransferase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167731908|emb|CAP50092.1| putative methyltransferase [Xanthomonas campestris pv. campestris]
          Length = 354

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%)

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           +   +   +  G  + DPF G G++   A    R   G+E+      +A +R+ 
Sbjct: 42  MRPFVRHFSARGQQVFDPFCGFGSTLLAAALEGRQAHGMEIDPARAVVARERLR 95


>gi|317154233|ref|YP_004122281.1| hypothetical protein Daes_2533 [Desulfovibrio aespoeensis Aspo-2]
 gi|316944484|gb|ADU63535.1| hypothetical protein Daes_2533 [Desulfovibrio aespoeensis Aspo-2]
          Length = 420

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 70/175 (40%), Gaps = 17/175 (9%)

Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
                 E  Q R    I   +G++ L  ++  +         L+S+ +V S +  +  LD
Sbjct: 1   MQVTFEEWTQGREVPFIGTNAGAQELPFQN-WRRFKEAFAPELISKAIVESERTVERCLD 59

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV--QPLGNIELTVLTGKRTEPR 287
           PF GSGT+    + L      +E+     D+   +++      L N+   V+   R+  +
Sbjct: 60  PFGGSGTTALACQFLGVYPTTVEVNPFLADLIEAKLSKYDCDKLANLFGRVVRSARS--K 117

Query: 288 VAFNLLVER---GLIQP---GQILTNAQ--GNISATVCADGTLISGTELGSIHRV 334
             F  + E+     ++P   G+ + +      I+A + A   +  G E    HR+
Sbjct: 118 SNFKRIFEKTPPTFVEPGVAGRWIFDRPVAERIAAYLTAIDKIAEGKE----HRL 168



 Score = 39.2 bits (90), Expect = 0.93,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 2/35 (5%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ 56
           ++ +G+   VL      S DL    PPY    +  
Sbjct: 233 ELTRGDCREVLR--DTNSFDLAVFSPPYPNSFDYT 265


>gi|134298388|ref|YP_001111884.1| DNA methylase N-4/N-6 domain-containing protein [Desulfotomaculum
           reducens MI-1]
 gi|134051088|gb|ABO49059.1| DNA methylase N-4/N-6 domain protein [Desulfotomaculum reducens
           MI-1]
          Length = 664

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 14/90 (15%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEM--- 253
           L    KP+ LL  ++   +  G+I+LD F GSGT+      L       R FI +++   
Sbjct: 428 LFQYPKPKELLQYLIKIGSAEGEIVLDFFAGSGTTAHAVLDLNAQDNGNRKFILVQLPEP 487

Query: 254 --KQDY---IDIATKRIASVQPLGNIELTV 278
             K DY    DI  +R+  V    N E   
Sbjct: 488 TNKPDYPTIADITKERVLRVISKLNEEDQN 517



 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 70/178 (39%), Gaps = 26/178 (14%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYN------------------LQLNGQLYR 59
           + II+G+++ VL+ L       V +I+ DPPYN                  L+ +GQ+  
Sbjct: 92  NLIIEGDNLEVLKLLQKSYHGKVKMIYIDPPYNTGNEFIYPDNFKEGLEDYLRYSGQV-D 150

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
            D   +   T++  +F S   +       L   R +L+ +G ++V    + +  + +++ 
Sbjct: 151 GDGIKLSTNTETEGRFHS--KWLNMMYPRLFLARNLLREDGVIFVSIDDNEVKNLRSIMD 208

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP--KAKGYTFNYDALKAAN 175
            +         +  +         + +  HE ++  + +    + GY  + +    +N
Sbjct: 209 EIFGEENFVSQFIWNTEGHTDNQFQVKVNHEYIVLYAKNQLIVSLGYIIDPNTRGQSN 266


>gi|323136315|ref|ZP_08071397.1| DNA methylase N-4/N-6 domain protein [Methylocystis sp. ATCC 49242]
 gi|322398389|gb|EFY00909.1| DNA methylase N-4/N-6 domain protein [Methylocystis sp. ATCC 49242]
          Length = 404

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 6/89 (6%)

Query: 183 DWLIPICSGSERLRNKDGEKLH-----PTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           D +    +       + G  LH        KP+ L +  +   T+PGD + DPF G GT+
Sbjct: 32  DGVTYYVNEFWTAGQRQGHSLHEVSYRACFKPQ-LPAFFIDRFTQPGDSVCDPFMGRGTT 90

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
              A    R   G +     + +A  R+ 
Sbjct: 91  PLQAALQGRRAFGSDANPLSVLLARPRLR 119



 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 8/121 (6%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLY---RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           L   SVDL+   PP+   +N +     R   + VDA      +      +   TRA    
Sbjct: 267 LGDASVDLVVTSPPFLDVVNYRADNWLRNWFAGVDAEKIDISQLRDIGGWTRMTRAVFEE 326

Query: 92  CRRVLKPNGTL-WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
             RV++P G + + +G      R G +L+ L  W   + +  +   +   R R  + ++ 
Sbjct: 327 LARVVRPGGHVAYEVGEVR---RGGVLLERL-VWKAMEGLPFERMCVMINRQRFTKTSNC 382

Query: 151 T 151
            
Sbjct: 383 W 383


>gi|307637373|gb|ADN79823.1| putative type II DNA modification enzyme/methyl transferase
           [Helicobacter pylori 908]
 gi|325995966|gb|ADZ51371.1| putative type II DNA modification enzyme [Helicobacter pylori 2018]
 gi|325997561|gb|ADZ49769.1| putative type II DNA modification enzyme/ methyl transferase
           [Helicobacter pylori 2017]
          Length = 322

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 73/196 (37%), Gaps = 34/196 (17%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K  ++ G++   L K+   SV+LIF  PPY    N ++Y                + +++
Sbjct: 143 KPSLLVGDNAQTLNKIAPSSVNLIFTSPPY---YNARIYS--------------DYKNYK 185

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGS---------------YHNIFRIGTMLQNLNFW 124
            Y +     L AC RVL+    + +  S               Y   F    +L +  F+
Sbjct: 186 DYLSAMSQSLKACFRVLEEGRFIIINVSPVITKRAGREFESVRYPIHFDFHQILIDNGFY 245

Query: 125 ILNDIVW-RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
            +++I+W +    +PN  G   QN    L +           +   A    ++++++   
Sbjct: 246 FVDEILWIKPDFSVPNRIGGYLQNKK-PLGYKPNCVSESLLVYRKKAPFLLDKNIKIAEK 304

Query: 184 WLIPICSGSERLRNKD 199
            L PI         K+
Sbjct: 305 RLKPIKQNHTLFGKKN 320


>gi|15602563|ref|NP_245635.1| hypothetical protein PM0698 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720985|gb|AAK02782.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 636

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 61/165 (36%), Gaps = 25/165 (15%)

Query: 20  KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPD--------------- 61
           ++  I+G+++  L+ L       V +I+ DPPYN   N  +Y  D               
Sbjct: 99  QNLFIEGDNLDALKLLQETYLGKVKMIYIDPPYNTG-NDFIYNDDFAETVDDFLARSNQV 157

Query: 62  ---HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
               + +   T+S  ++ S   + +   + L   R +L  +G +++    +    +  + 
Sbjct: 158 DEEGNRLVTNTESNGRYHS--DWLSMMYSRLKLARNLLTDDGVIFISIDDNEQANLKRIC 215

Query: 119 QNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
             +         + R+++     + +     H+ ++  +   K  
Sbjct: 216 DEIFGEKNFISTIPRQTSAQRPSQEKYVSITHDYILVYAKVKKHN 260



 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 21/89 (23%)

Query: 201 EKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGI-- 251
            K+    KP AL+  ++ +S+ +  DIILD F GS T+     +        R FI +  
Sbjct: 397 NKVFDFSKPVALIELLVNLSALQENDIILDFFAGSSTTAHAVMQFNAENGGNRRFIMVQL 456

Query: 252 -----EMKQDY-------IDIATKRIASV 268
                E  + Y        +I+ +RI   
Sbjct: 457 PEKTEEKSEAYKSGYQTIAEISKERIRRA 485


>gi|307566477|ref|ZP_07628909.1| DNA (cytosine-5-)-methyltransferase [Prevotella amnii CRIS 21A-A]
 gi|307344821|gb|EFN90226.1| DNA (cytosine-5-)-methyltransferase [Prevotella amnii CRIS 21A-A]
          Length = 565

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 63/175 (36%), Gaps = 28/175 (16%)

Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSSTK- 222
           ++        E +    +W +   + +E    K   +LHP +      L+   L S    
Sbjct: 99  YHGVRETKWKEKLGSDLNWALSFDTLTEAETTKHVHRLHPYKGKFIPQLVEYFLDSHVDK 158

Query: 223 --------PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ-------------DY--ID 259
                    GD ILDPF GSGT+   A +L  + IGI++ +             DY  +D
Sbjct: 159 FKQRSYFSEGDNILDPFAGSGTTLVQANELNMNAIGIDISEFNTLINNCKLMRYDYDNLD 218

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISA 314
              KRI SV  L NIE+   T K  +  +    +               +  +  
Sbjct: 219 YEIKRITSV--LKNIEIHDNTNKFEQKLLEELAIFNNKYFPVPDYKYKVRNKLID 271


>gi|330947324|gb|EGH48010.1| DNA methylase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 71

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 23/37 (62%)

Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
          ++  G+ + V+  LPA SV ++  DPPY ++  G+ +
Sbjct: 4  ELHLGDCLYVMRSLPANSVHIVVTDPPYGIRFMGKSW 40


>gi|238751722|ref|ZP_04613210.1| Site-specific DNA-methyltransferase (Adenine-specific) [Yersinia
           rohdei ATCC 43380]
 gi|238709993|gb|EEQ02223.1| Site-specific DNA-methyltransferase (Adenine-specific) [Yersinia
           rohdei ATCC 43380]
          Length = 632

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 61/165 (36%), Gaps = 19/165 (11%)

Query: 106 GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN-----AHETLIWASPSPK 160
           G +       +  +  +++ L + + +   P      RR ++       E  IW   S  
Sbjct: 275 GVWLATPLTRSEFRERDYYPLINPMGKSIYPPDGTCWRRPKDILSELQEEDRIWWGKSGD 334

Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK------DGEKLHPTQKPEALLS 214
           +          +  +  V     W     +GS R  N       DG K+  T KP  L+ 
Sbjct: 335 SNFPMEKKFLSETKSGVVNQT--WWPYDFAGSTRNANAEIKSLFDGVKVFDTPKPTKLIV 392

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEM 253
           R++   T    +++D F GSGT+G             R++I I++
Sbjct: 393 RLISMITNKDSLVMDFFAGSGTTGHAVYLKNKEDGGNRNYILIQL 437



 Score = 55.4 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 68/209 (32%), Gaps = 20/209 (9%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQL------NGQLYRPDHSLVDAVTD 70
           K+ +I+G+++ VL+ L    A  V LI+ DPPYN         N Q    ++  +   T+
Sbjct: 93  KNLMIEGDNLEVLKLLQKSYAGKVKLIYIDPPYNTGKDFVYPDNFQDNIKNYLEITGQTE 152

Query: 71  SWDKFSSFEA--------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
              + S+           +       L   + +L+ +G + V         +  M   + 
Sbjct: 153 EGSRRSTNTETSGRYHTDWLNMMYPRLKLAKNLLRKDGVIAVNVDDIESDNVKKMCSEIF 212

Query: 123 ---FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
               +I N +   K  P  +       + H  L                      N D  
Sbjct: 213 GEENFIANIVWQSKDTPGNDSISIAQTHNHLFLYHNGQLSLNLLDRNEKQLSNYKNPDND 272

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQK 208
            R  WL    + SE         ++P  K
Sbjct: 273 PRGVWLATPLTRSEFRERDYYPLINPMGK 301


>gi|167568214|ref|ZP_02361088.1| type III DNA modification methyltransferase [Burkholderia
           oklahomensis C6786]
          Length = 673

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 53/153 (34%), Gaps = 21/153 (13%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNG----------------QLYRP 60
           ++ +I+G ++ VL+ L    A    L++ DPPYN   +                      
Sbjct: 102 RNLMIEGENLEVLKLLQKSYAGRAKLVYIDPPYNTGKDFVYPDNFTDSLRHYLELTGQTT 161

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
               V + TD+  +F +   +       L   R +L  +G + V    H    +  +++ 
Sbjct: 162 GGKKVSSNTDASGRFHT--DWLNMIYPRLKLARDLLADDGVIAVHIDEHEQHALVLVMRE 219

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           +        V       P    R     HE+++
Sbjct: 220 IFGEDNELGVAVWDKRNPKGDARGIAYQHESIV 252



 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 69/220 (31%), Gaps = 30/220 (13%)

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF-RGRRFQNA 148
            A    +  +G ++ + S            +   + +  +      P P   RG R   A
Sbjct: 312 EAMYDRISADGRVYRLVS-MAWPNKKKAPDD---YFVPLVHPVTGRPCPVPERGWRNPPA 367

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
               +      +               ++    +   +    GS+    K  E      K
Sbjct: 368 TMQALLDKGLVEFGADETTQPQRIYFLDENMYENVPSVLPFGGSDDALLKSLEIPFDQPK 427

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQ------- 255
           P    + I+   T   D+I+D F GSGT+      L       R +  +++ +       
Sbjct: 428 PVEFAASIIGWCTDGNDLIVDFFGGSGTTAHAVMALNAADGGNRRYALVQLPEPLDADSK 487

Query: 256 ------DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
                 D+   A +R     PL   ELT    +R+  R+A
Sbjct: 488 DQKAAADFCA-ARRR-----PLNLAELTKERLRRSAARIA 521


>gi|167560955|ref|ZP_02353871.1| type III DNA modification methyltransferase [Burkholderia
           oklahomensis EO147]
          Length = 673

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 53/153 (34%), Gaps = 21/153 (13%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNG----------------QLYRP 60
           ++ +I+G ++ VL+ L    A    L++ DPPYN   +                      
Sbjct: 102 RNLMIEGENLEVLKLLQKSYAGRAKLVYIDPPYNTGKDFVYPDNFTDSLRHYLELTGQTT 161

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
               V + TD+  +F +   +       L   R +L  +G + V    H    +  +++ 
Sbjct: 162 GGKKVSSNTDASGRFHT--DWLNMIYPRLKLARDLLADDGVIAVHIDEHEQHALVLVMRE 219

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           +        V       P    R     HE+++
Sbjct: 220 IFGEDNELGVAVWDKRNPKGDARGIAYQHESIV 252



 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 69/220 (31%), Gaps = 30/220 (13%)

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF-RGRRFQNA 148
            A    +  +G ++ + S            +   + +  +      P P   RG R   A
Sbjct: 312 EAMYDRISADGRVYRLVS-MAWPNKKKAPDD---YFVPLVHPVTGRPCPVPERGWRNPPA 367

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
               +      +               ++    +   +    GS+    K  E      K
Sbjct: 368 TMQALLDKGLVEFGADETTQPQRIYFLDENMYENVPSVLPFGGSDDALLKSLEIPFDQPK 427

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQ------- 255
           P    + I+   T   D+I+D F GSGT+      L       R +  +++ +       
Sbjct: 428 PVEFAASIIGWCTDGNDLIVDFFGGSGTTAHAVMALNAADGGNRRYALVQLPEPLDADSK 487

Query: 256 ------DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
                 D+   A +R     PL   ELT    +R+  R+A
Sbjct: 488 DQKAAADFCA-ARRR-----PLNLAELTKERLRRSAARIA 521


>gi|218661293|ref|ZP_03517223.1| putative DNA methylase protein [Rhizobium etli IE4771]
          Length = 202

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 33/64 (51%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            P AL+S +L   TK GD + DPF G GT+  V ++  R   GIE  +   +   +RI +
Sbjct: 12  FPGALVSALLDRFTKQGDAVFDPFVGLGTTFFVCEQRGRLPYGIEADRQRYEWVRERITA 71

Query: 268 VQPL 271
              L
Sbjct: 72  KHHL 75


>gi|118578680|ref|YP_899930.1| DNA methylase N-4/N-6 domain-containing protein [Pelobacter
           propionicus DSM 2379]
 gi|118501390|gb|ABK97872.1| DNA methylase N-4/N-6 domain protein [Pelobacter propionicus DSM
           2379]
          Length = 626

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 81/240 (33%), Gaps = 38/240 (15%)

Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK--------AKG 163
           +R+ T+L++       + +  + +      G+R+Q   E +   +             K 
Sbjct: 273 YRLTTILKSNRGANFRNTMSFEIDGYAPPDGQRWQGGEEEIKRLNIEGYLEFRDGTPFKR 332

Query: 164 YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTK 222
           Y  + +  +       M SDW     +G   L    G      T KP  LL  ++ S T 
Sbjct: 333 YYEDEEGAEHDPFYCFMESDWSSTSEAGKAELNEILGNDHGFDTVKPTRLLKTLIQSITN 392

Query: 223 P--GDIILDPFFGSGTSGAV------AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
           P   +I++D F GSGT+G        A    R ++ +++               +PL   
Sbjct: 393 PGNNEIVVDFFAGSGTTGHAVMAQNSADGGNRRYVLVQL--------------PEPLDPE 438

Query: 275 ELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRV 334
                T      ++     +        ++        +  V  D TL +G     + ++
Sbjct: 439 NKDQKTAANFCDQIGKPRTI-------AELTKERLRRAAKKVKDDNTLFAGDLGFRVFKL 491



 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 69/201 (34%), Gaps = 25/201 (12%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRP---------------- 60
           ++ +I+G+++ VL+ L    A  V LI+ DPPYN   +                      
Sbjct: 88  QNLMIEGDNLEVLKLLQKSYAGKVKLIYIDPPYNTGNDFVYPDNFQDNIKNYLELTGQVE 147

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
             + + + T++  +F +   +       L   R +L  +G L++  +Y  +  +  +   
Sbjct: 148 GGAKISSNTEASGRFHT--DWLNMVYPRLKLARNLLSEDGVLFISINYRELAHVLRLCDE 205

Query: 121 L-NFWILNDIVWRKSNPMPNFRG---RRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
           +         V  K+   P   G    R Q   E ++    S K   +   Y     +  
Sbjct: 206 IFGEENFVGNVTWKARVKPVNIGEAKYRPQGETEYVVIYQKSDKEGKFQPLYTGGVRSYP 265

Query: 177 DVQMRSDWLIPICSGSERLRN 197
                  + +     S R  N
Sbjct: 266 HEINGRKYRLTTILKSNRGAN 286


>gi|332289379|ref|YP_004420231.1| putative methyltransferase [Gallibacterium anatis UMN179]
 gi|330432275|gb|AEC17334.1| putative methyltransferase [Gallibacterium anatis UMN179]
          Length = 585

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 62/178 (34%), Gaps = 22/178 (12%)

Query: 125 ILNDIVWRKSNPM-PNFRGRRFQNAHE-TLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
             N I W       P +  +R Q  +E   ++ + +      T+  +  +          
Sbjct: 276 FPNGISWTAPKGRYPRYSKQRLQELYEENALYFNKNGGIDKKTYLSEVRQGVTCGTMWSY 335

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           + +    S +E + +  G+ +    K   LL++I+   +    +ILD F GS T+     
Sbjct: 336 EDVGHSHSNNEEIASILGKGIFNDPKGTRLLNKIIKLGSDKNSLILDFFAGSATTAHAVM 395

Query: 243 KL------RRSFIGI-------EMKQDY-------IDIATKRIASVQPLGNIELTVLT 280
           +L       R FI +       E  + +        +I+ +RI         +    T
Sbjct: 396 QLNAEDGGNRRFICVQLPEKTNEQSEAFKAGFHTIAEISKERIRRAGKQIAEQYPNQT 453



 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 53/164 (32%), Gaps = 21/164 (12%)

Query: 18  EWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN------------------GQ 56
           + ++  I+G ++ VL+ L      SV +I+ DPPYN   +                  G 
Sbjct: 65  QSQNVFIEGENLEVLKILQKSYFNSVKMIYIDPPYNTGNDFIYKDNFAESQADYAEKVGD 124

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
                      V +S +       +       L   R +L+ +G +++    +   ++  
Sbjct: 125 KDEAGKLKRAFVKNSKENGHYHSNWLNMMLPRLHLARNLLRDDGVIFISIDDNEQAQLKL 184

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
           +   +         +  +N             HE ++  + +  
Sbjct: 185 LCDEVFGEENFVAGFIWNNKYTVSNDTDVSYQHENIVCYAKNRH 228


>gi|167916925|ref|ZP_02504016.1| type III DNA modification methyltransferase [Burkholderia
           pseudomallei BCC215]
 gi|254357343|ref|ZP_04973617.1| type III DNA modification methyltransferase [Burkholderia mallei
           2002721280]
 gi|148026407|gb|EDK84492.1| type III DNA modification methyltransferase [Burkholderia mallei
           2002721280]
          Length = 674

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 54/153 (35%), Gaps = 21/153 (13%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNG----------------QLYRP 60
           ++ +I+G ++ VL+ L    A  V L++ DPPYN   +                      
Sbjct: 104 RNLMIEGENLEVLKLLQKSYAGRVKLVYIDPPYNTGKDFVYPDNFTDSLRHYLELTGQTT 163

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
               V + TD+  +F +   +       L   R +L  +G + V    H    +  +++ 
Sbjct: 164 GGKRVTSHTDASGRFHT--DWLNMIYPRLKLARDLLTEDGVIAVHIDEHEQHALVLVMRE 221

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           +        V       P    R     HE+++
Sbjct: 222 IFGEDNELGVAVWDKRNPKGDARGIAYQHESIV 254



 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 52/171 (30%), Gaps = 11/171 (6%)

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF-RGRRFQNA 148
            A    +  +G ++ + S            +   + +  +      P P   RG R   A
Sbjct: 314 EAMYDRISADGRVYRLVS-MAWPNKKKAPDD---YFVPLVHPVTGKPCPVPERGWRNPPA 369

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
               +      +               ++    +   +    GS+    K         K
Sbjct: 370 TMRALIDKGLVEFGADETTQPQRIYFLDENMYENVPSVLPFGGSDDALMKSLGIPFDQPK 429

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
           P    + I+   T   D+I+D F GSGT+      L       R ++ +++
Sbjct: 430 PVEFAASIIGWCTDGDDLIVDFFGGSGTTAHAVMALNAADGGHRRYVLVQL 480


>gi|53724233|ref|YP_104200.1| type III DNA modification methyltransferase [Burkholderia mallei
           ATCC 23344]
 gi|254174912|ref|ZP_04881573.1| type III DNA modification methyltransferase [Burkholderia mallei
           ATCC 10399]
 gi|52427656|gb|AAU48249.1| type III DNA modification methyltransferase [Burkholderia mallei
           ATCC 23344]
 gi|160695957|gb|EDP85927.1| type III DNA modification methyltransferase [Burkholderia mallei
           ATCC 10399]
          Length = 677

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 54/153 (35%), Gaps = 21/153 (13%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNG----------------QLYRP 60
           ++ +I+G ++ VL+ L    A  V L++ DPPYN   +                      
Sbjct: 107 RNLMIEGENLEVLKLLQKSYAGRVKLVYIDPPYNTGKDFVYPDNFTDSLRHYLELTGQTT 166

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
               V + TD+  +F +   +       L   R +L  +G + V    H    +  +++ 
Sbjct: 167 GGKRVTSHTDASGRFHT--DWLNMIYPRLKLARDLLTEDGVIAVHIDEHEQHALVLVMRE 224

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           +        V       P    R     HE+++
Sbjct: 225 IFGEDNELGVAVWDKRNPKGDARGIAYQHESIV 257



 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 52/171 (30%), Gaps = 11/171 (6%)

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF-RGRRFQNA 148
            A    +  +G ++ + S            +   + +  +      P P   RG R   A
Sbjct: 317 EAMYDRISADGRVYRLVS-MAWPNKKKAPDD---YFVPLVHPVTGKPCPVPERGWRNPPA 372

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
               +      +               ++    +   +    GS+    K         K
Sbjct: 373 TMRALIDKGLVEFGADETTQPQRIYFLDENMYENVPSVLPFGGSDDALMKSLGIPFDQPK 432

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
           P    + I+   T   D+I+D F GSGT+      L       R ++ +++
Sbjct: 433 PVEFAASIIGWCTDGDDLIVDFFGGSGTTAHAVMALNAADGGHRRYVLVQL 483


>gi|53717681|ref|YP_106667.1| type III restriction-modification system methylase [Burkholderia
           pseudomallei K96243]
 gi|52208095|emb|CAH34025.1| type III restriction-modification system methylase [Burkholderia
           pseudomallei K96243]
          Length = 670

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 54/153 (35%), Gaps = 21/153 (13%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNG----------------QLYRP 60
           ++ +I+G ++ VL+ L    A  V L++ DPPYN   +                      
Sbjct: 100 RNLMIEGENLEVLKLLQKSYAGRVKLVYIDPPYNTGKDFVYPDNFTDSLRHYLELTGQTT 159

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
               V + TD+  +F +   +       L   R +L  +G + V    H    +  +++ 
Sbjct: 160 GGKRVTSHTDASGRFHT--DWLNMIYPRLKLARDLLTEDGVIAVHIDEHEQHALVLVMRE 217

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           +        V       P    R     HE+++
Sbjct: 218 IFGEDNELGVAVWDKRNPKGDARGIAYQHESIV 250



 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 52/171 (30%), Gaps = 11/171 (6%)

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF-RGRRFQNA 148
            A    +  +G ++ + S            +   + +  +      P P   RG R   A
Sbjct: 310 EAMYDRISADGRVYRLVS-MAWPNKKKAPDD---YFVPLVHPVTGKPCPVPERGWRNPPA 365

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
               +      +               ++    +   +    GS+    K         K
Sbjct: 366 TMRALIDKGLVEFGADETTQPQRIYFLDENMYENVPSVLPFGGSDDALMKSLGIPFDQPK 425

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
           P    + I+   T   D+I+D F GSGT+      L       R ++ +++
Sbjct: 426 PVEFAASIIGWCTDGDDLIVDFFGGSGTTAHAVMALNAADGGHRRYVLVQL 476


>gi|254184109|ref|ZP_04890700.1| type III DNA modification methyltransferase [Burkholderia
           pseudomallei 1655]
 gi|184214641|gb|EDU11684.1| type III DNA modification methyltransferase [Burkholderia
           pseudomallei 1655]
          Length = 671

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 54/153 (35%), Gaps = 21/153 (13%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNG----------------QLYRP 60
           ++ +I+G ++ VL+ L    A  V L++ DPPYN   +                      
Sbjct: 101 RNLMIEGENLEVLKLLQKSYAGRVKLVYIDPPYNTGKDFVYPDNFTDSLRHYLELTGQTT 160

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
               V + TD+  +F +   +       L   R +L  +G + V    H    +  +++ 
Sbjct: 161 GGKRVTSHTDASGRFHT--DWLNMIYPRLKLARDLLTEDGVIAVHIDEHEQHALVLVMRE 218

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           +        V       P    R     HE+++
Sbjct: 219 IFGEDNELGVAVWDKRNPKGDARGIAYQHESIV 251



 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 52/171 (30%), Gaps = 11/171 (6%)

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF-RGRRFQNA 148
            A    +  +G ++ + S            +   + +  +      P P   RG R   A
Sbjct: 311 EAMYDRISADGRVYRLVS-MAWPNKKKAPDD---YFVPLVHPVTGKPCPMPERGWRNPPA 366

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
               +      +               ++    +   +    GS+    K         K
Sbjct: 367 TMRALIDKGLVEFGADETTQPQRIYFLDENMYENVPSVLPFGGSDDALMKSLGIPFDQPK 426

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
           P    + I+   T   D+I+D F GSGT+      L       R ++ +++
Sbjct: 427 PVEFAASIIGWCTDGDDLIVDFFGGSGTTAHAVMALNAADGGHRRYVLVQL 477


>gi|294626876|ref|ZP_06705467.1| DNA methylase N-4/N-6 [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292598736|gb|EFF42882.1| DNA methylase N-4/N-6 [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
          Length = 364

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 19/103 (18%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA-- 261
           +    PE  +++ L++ T+ GD + DPF G GT+   +    R   G+++      IA  
Sbjct: 11  YFAMFPEEFVAKQLLAYTERGDTVFDPFCGRGTTVFESLLNGRHASGVDINPVAACIAGA 70

Query: 262 ---TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP 301
                R+++V+            +  E ++AF+   E G   P
Sbjct: 71  KADAPRLSNVK-----------NRLAELKIAFS---EAGEFNP 99



 Score = 40.0 bits (92), Expect = 0.69,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 13/88 (14%)

Query: 27  NSISVLEKLPA--KSVDLIFADPPYNLQLNGQ---------LYRPDHSLVDAVTDSWDKF 75
           ++    +  P+    V LI   PPY    +           L   +  L+    D  D+ 
Sbjct: 212 DARKAEKAFPSLENKVKLIVTSPPYLDTTDYSEDQWLRLWFLGGAERPLIKKNRD--DRH 269

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLW 103
           +S + Y  F       C  ++K    + 
Sbjct: 270 TSADLYWKFLEEAWEGCANLVKKGTVIV 297


>gi|167822072|ref|ZP_02453543.1| type III DNA modification methyltransferase [Burkholderia
           pseudomallei 9]
 gi|226193130|ref|ZP_03788740.1| type III DNA modification methyltransferase [Burkholderia
           pseudomallei Pakistan 9]
 gi|225934730|gb|EEH30707.1| type III DNA modification methyltransferase [Burkholderia
           pseudomallei Pakistan 9]
          Length = 671

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 54/153 (35%), Gaps = 21/153 (13%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNG----------------QLYRP 60
           ++ +I+G ++ VL+ L    A  V L++ DPPYN   +                      
Sbjct: 101 RNLMIEGENLEVLKLLQKSYAGRVKLVYIDPPYNTGKDFVYPDNFTDSLRHYLELTGQTT 160

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
               V + TD+  +F +   +       L   R +L  +G + V    H    +  +++ 
Sbjct: 161 GGKRVTSHTDASGRFHT--DWLNMIYPRLKLARDLLTEDGVIAVHIDEHEQHALVLVMRE 218

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           +        V       P    R     HE+++
Sbjct: 219 IFGEDNELGVAVWDKRNPKGDARGIAYQHESIV 251



 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 52/171 (30%), Gaps = 11/171 (6%)

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF-RGRRFQNA 148
            A    +  +G ++ + S            +   + +  +      P P   RG R   A
Sbjct: 311 EAMYDRISADGRVYRLVS-MAWPNKKKAPDD---YFVPLVHPVTGKPCPVPERGWRNPPA 366

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
               +      +               ++    +   +    GS+    K         K
Sbjct: 367 TMRALIDKGLVEFGADETTQPQRIYFLDENMYENVPSVLPFGGSDDALMKSLGIPFDQPK 426

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
           P    + I+   T   D+I+D F GSGT+      L       R ++ +++
Sbjct: 427 PVEFAASIIGWCTDGDDLIVDFFGGSGTTAHAVMALNAADGGHRRYVLVQL 477


>gi|76811368|ref|YP_331675.1| type III DNA modification methyltransferase [Burkholderia
           pseudomallei 1710b]
 gi|126452068|ref|YP_001064331.1| type III DNA modification methyltransferase [Burkholderia
           pseudomallei 1106a]
 gi|242315571|ref|ZP_04814587.1| type III DNA modification methyltransferase [Burkholderia
           pseudomallei 1106b]
 gi|254186574|ref|ZP_04893091.1| type III DNA modification methyltransferase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|76580821|gb|ABA50296.1| type III DNA modification methyltransferase [Burkholderia
           pseudomallei 1710b]
 gi|126225710|gb|ABN89250.1| type III DNA modification methyltransferase [Burkholderia
           pseudomallei 1106a]
 gi|157934259|gb|EDO89929.1| type III DNA modification methyltransferase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|242138810|gb|EES25212.1| type III DNA modification methyltransferase [Burkholderia
           pseudomallei 1106b]
          Length = 677

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 54/153 (35%), Gaps = 21/153 (13%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNG----------------QLYRP 60
           ++ +I+G ++ VL+ L    A  V L++ DPPYN   +                      
Sbjct: 107 RNLMIEGENLEVLKLLQKSYAGRVKLVYIDPPYNTGKDFVYPDNFTDSLRHYLELTGQTT 166

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
               V + TD+  +F +   +       L   R +L  +G + V    H    +  +++ 
Sbjct: 167 GGKRVTSHTDASGRFHT--DWLNMIYPRLKLARDLLTEDGVIAVHIDEHEQHALVLVMRE 224

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           +        V       P    R     HE+++
Sbjct: 225 IFGEDNELGVAVWDKRNPKGDARGIAYQHESIV 257



 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 52/171 (30%), Gaps = 11/171 (6%)

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF-RGRRFQNA 148
            A    +  +G ++ + S            +   + +  +      P P   RG R   A
Sbjct: 317 EAMYDRISADGRVYRLVS-MAWPNKKKAPDD---YFVPLVHPVTGKPCPVPERGWRNPPA 372

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
               +      +               ++    +   +    GS+    K         K
Sbjct: 373 TMRALIDKGLVEFGADETTQPQRIYFLDENMYENVPSVLPFGGSDDALMKSLGIPFDQPK 432

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
           P    + I+   T   D+I+D F GSGT+      L       R ++ +++
Sbjct: 433 PVEFAASIIGWCTDGDDLIVDFFGGSGTTAHAVMALNAADGGHRRYVLVQL 483


>gi|167813529|ref|ZP_02445209.1| type III DNA modification methyltransferase [Burkholderia
           pseudomallei 91]
 gi|254194748|ref|ZP_04901179.1| type III DNA modification methyltransferase [Burkholderia
           pseudomallei S13]
 gi|169651498|gb|EDS84191.1| type III DNA modification methyltransferase [Burkholderia
           pseudomallei S13]
          Length = 671

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 54/153 (35%), Gaps = 21/153 (13%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNG----------------QLYRP 60
           ++ +I+G ++ VL+ L    A  V L++ DPPYN   +                      
Sbjct: 101 RNLMIEGENLEVLKLLQKSYAGRVKLVYIDPPYNTGKDFVYPDNFTDSLRHYLELTGQTT 160

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
               V + TD+  +F +   +       L   R +L  +G + V    H    +  +++ 
Sbjct: 161 GGKRVTSHTDASGRFHT--DWLNMIYPRLKLARDLLTEDGVIAVHIDEHEQHALVLVMRE 218

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           +        V       P    R     HE+++
Sbjct: 219 IFGEDNELGVAVWDKRNPKGDARGIAYQHESIV 251



 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 52/171 (30%), Gaps = 11/171 (6%)

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF-RGRRFQNA 148
            A    +  +G ++ + S            +   + +  +      P P   RG R   A
Sbjct: 311 EAMYDRISADGRVYRLVS-MAWPNKKKAPDD---YFVPLVHPVTGKPCPVPERGWRNPPA 366

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
               +      +               ++    +   +    GS+    K         K
Sbjct: 367 TMRALIDKGLVEFGADETTQPQRIYFLDENMYENVPSVLPFGGSDDALMKSLGIPFDQPK 426

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
           P    + I+   T   D+I+D F GSGT+      L       R ++ +++
Sbjct: 427 PVEFAASIIGWCTDGDDLIVDFFGGSGTTAHAVMALNAADGGHRRYVLVQL 477


>gi|126440391|ref|YP_001057101.1| type III DNA modification methyltransferase [Burkholderia
           pseudomallei 668]
 gi|167736454|ref|ZP_02409228.1| type III DNA modification methyltransferase [Burkholderia
           pseudomallei 14]
 gi|167900667|ref|ZP_02487872.1| type III DNA modification methyltransferase [Burkholderia
           pseudomallei NCTC 13177]
 gi|126219884|gb|ABN83390.1| type III DNA modification methyltransferase [Burkholderia
           pseudomallei 668]
          Length = 671

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 54/153 (35%), Gaps = 21/153 (13%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNG----------------QLYRP 60
           ++ +I+G ++ VL+ L    A  V L++ DPPYN   +                      
Sbjct: 101 RNLMIEGENLEVLKLLQKSYAGRVKLVYIDPPYNTGKDFVYPDNFTDSLRHYLELTGQTT 160

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
               V + TD+  +F +   +       L   R +L  +G + V    H    +  +++ 
Sbjct: 161 GGKRVTSHTDASGRFHT--DWLNMIYPRLKLARDLLTEDGVIAVHIDEHEQHALVLVMRE 218

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           +        V       P    R     HE+++
Sbjct: 219 IFGEDNELGVAVWDKRNPKGDARGIAYQHESIV 251



 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 52/171 (30%), Gaps = 11/171 (6%)

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF-RGRRFQNA 148
            A    +  +G ++ + S            +   + +  +      P P   RG R   A
Sbjct: 311 EAMYDRISADGRVYRLVS-MAWPNKKKAPDD---YFVPLVHPVTGKPCPVPERGWRNPPA 366

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
               +      +               ++    +   +    GS+    K         K
Sbjct: 367 TMRALIDKGLVEFGADETTQPQRIYFLDENMYENVPSVLPFGGSDDALMKSLGIPFDQPK 426

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
           P    + I+   T   D+I+D F GSGT+      L       R ++ +++
Sbjct: 427 PVEFAASIIGWCTDGDDLIVDFFGGSGTTAHAVMALNAADGGHRRYVLVQL 477


>gi|167843680|ref|ZP_02469188.1| type III DNA modification methyltransferase [Burkholderia
           pseudomallei B7210]
 gi|167908886|ref|ZP_02495977.1| type III DNA modification methyltransferase [Burkholderia
           pseudomallei 112]
 gi|254260320|ref|ZP_04951374.1| type III DNA modification methyltransferase [Burkholderia
           pseudomallei 1710a]
 gi|254219009|gb|EET08393.1| type III DNA modification methyltransferase [Burkholderia
           pseudomallei 1710a]
          Length = 671

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 54/153 (35%), Gaps = 21/153 (13%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNG----------------QLYRP 60
           ++ +I+G ++ VL+ L    A  V L++ DPPYN   +                      
Sbjct: 101 RNLMIEGENLEVLKLLQKSYAGRVKLVYIDPPYNTGKDFVYPDNFTDSLRHYLELTGQTT 160

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
               V + TD+  +F +   +       L   R +L  +G + V    H    +  +++ 
Sbjct: 161 GGKRVTSHTDASGRFHT--DWLNMIYPRLKLARDLLTEDGVIAVHIDEHEQHALVLVMRE 218

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           +        V       P    R     HE+++
Sbjct: 219 IFGEDNELGVAVWDKRNPKGDARGIAYQHESIV 251



 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 52/171 (30%), Gaps = 11/171 (6%)

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF-RGRRFQNA 148
            A    +  +G ++ + S            +   + +  +      P P   RG R   A
Sbjct: 311 EAMYDRISADGRVYRLVS-MAWPNKKKAPDD---YFVPLVHPVTGKPCPVPERGWRNPPA 366

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
               +      +               ++    +   +    GS+    K         K
Sbjct: 367 TMRALIDKGLVEFGADETTQPQRIYFLDENMYENVPSVLPFGGSDDALMKSLGIPFDQPK 426

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
           P    + I+   T   D+I+D F GSGT+      L       R ++ +++
Sbjct: 427 PVEFAASIIGWCTDGDDLIVDFFGGSGTTAHAVMALNAADGGHRRYVLVQL 477


>gi|67641556|ref|ZP_00440332.1| type III DNA modification methyltransferase [Burkholderia mallei
           GB8 horse 4]
 gi|121598234|ref|YP_994560.1| type III DNA modification methyltransferase [Burkholderia mallei
           SAVP1]
 gi|124383968|ref|YP_001027824.1| type III DNA modification methyltransferase [Burkholderia mallei
           NCTC 10229]
 gi|126448952|ref|YP_001082228.1| type III DNA modification methyltransferase [Burkholderia mallei
           NCTC 10247]
 gi|134281343|ref|ZP_01768051.1| type III DNA modification methyltransferase [Burkholderia
           pseudomallei 305]
 gi|167001631|ref|ZP_02267425.1| type III DNA modification methyltransferase [Burkholderia mallei
           PRL-20]
 gi|167717412|ref|ZP_02400648.1| type III DNA modification methyltransferase [Burkholderia
           pseudomallei DM98]
 gi|167892155|ref|ZP_02479557.1| type III DNA modification methyltransferase [Burkholderia
           pseudomallei 7894]
 gi|237814438|ref|YP_002898889.1| type III DNA modification methyltransferase [Burkholderia
           pseudomallei MSHR346]
 gi|254201270|ref|ZP_04907634.1| type III DNA modification methyltransferase [Burkholderia mallei
           FMH]
 gi|254206611|ref|ZP_04912962.1| type III DNA modification methyltransferase [Burkholderia mallei
           JHU]
 gi|121227044|gb|ABM49562.1| type III DNA modification methyltransferase [Burkholderia mallei
           SAVP1]
 gi|124291988|gb|ABN01257.1| type III DNA modification methyltransferase [Burkholderia mallei
           NCTC 10229]
 gi|126241822|gb|ABO04915.1| type III DNA modification methyltransferase [Burkholderia mallei
           NCTC 10247]
 gi|134247010|gb|EBA47096.1| type III DNA modification methyltransferase [Burkholderia
           pseudomallei 305]
 gi|147747164|gb|EDK54240.1| type III DNA modification methyltransferase [Burkholderia mallei
           FMH]
 gi|147752153|gb|EDK59219.1| type III DNA modification methyltransferase [Burkholderia mallei
           JHU]
 gi|237505996|gb|ACQ98314.1| type III DNA modification methyltransferase [Burkholderia
           pseudomallei MSHR346]
 gi|238522507|gb|EEP85951.1| type III DNA modification methyltransferase [Burkholderia mallei
           GB8 horse 4]
 gi|243062643|gb|EES44829.1| type III DNA modification methyltransferase [Burkholderia mallei
           PRL-20]
          Length = 671

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 54/153 (35%), Gaps = 21/153 (13%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNG----------------QLYRP 60
           ++ +I+G ++ VL+ L    A  V L++ DPPYN   +                      
Sbjct: 101 RNLMIEGENLEVLKLLQKSYAGRVKLVYIDPPYNTGKDFVYPDNFTDSLRHYLELTGQTT 160

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
               V + TD+  +F +   +       L   R +L  +G + V    H    +  +++ 
Sbjct: 161 GGKRVTSHTDASGRFHT--DWLNMIYPRLKLARDLLTEDGVIAVHIDEHEQHALVLVMRE 218

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           +        V       P    R     HE+++
Sbjct: 219 IFGEDNELGVAVWDKRNPKGDARGIAYQHESIV 251



 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 52/171 (30%), Gaps = 11/171 (6%)

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF-RGRRFQNA 148
            A    +  +G ++ + S            +   + +  +      P P   RG R   A
Sbjct: 311 EAMYDRISADGRVYRLVS-MAWPNKKKAPDD---YFVPLVHPVTGKPCPVPERGWRNPPA 366

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
               +      +               ++    +   +    GS+    K         K
Sbjct: 367 TMRALIDKGLVEFGADETTQPQRIYFLDENMYENVPSVLPFGGSDDALMKSLGIPFDQPK 426

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
           P    + I+   T   D+I+D F GSGT+      L       R ++ +++
Sbjct: 427 PVEFAASIIGWCTDGDDLIVDFFGGSGTTAHAVMALNAADGGHRRYVLVQL 477


>gi|205372118|ref|ZP_03224934.1| adenine specific DNA methylase [Bacillus coahuilensis m4-4]
          Length = 230

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 13/117 (11%)

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM------KQDYIDI 260
           + +I+        ++LDP+ GSGT+G    +L       R FI IE        +    +
Sbjct: 1   MKKIIQLWCPSEGLVLDPYAGSGTTGHAVLELNQETEAKRKFILIEQGNSEKGDKYARSL 60

Query: 261 ATKRIASVQPLGN-IELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATV 316
             +RI  V       +  VL  KR      F   +    I    +LT  +  +   V
Sbjct: 61  TQERIRRVITGERPNQNGVLVQKRKPINSGFEFRILTKQIDASTVLTMKKDELVDLV 117


>gi|300871155|ref|YP_003786027.1| hypothetical protein BP951000_1543 [Brachyspira pilosicoli 95/1000]
 gi|300688855|gb|ADK31526.1| hypothetical protein BP951000_1543 [Brachyspira pilosicoli 95/1000]
          Length = 246

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 34/63 (53%)

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
            ++  K +    P  ++  +L   TK  D+++DP  GSGT+  VA++L R  +G ++   
Sbjct: 24  EEEKHKHYIGATPSYIIWNLLNRYTKEKDLVVDPMAGSGTTVDVARELGRRALGYDINPK 83

Query: 257 YID 259
            ++
Sbjct: 84  ALE 86



 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 66/186 (35%), Gaps = 20/186 (10%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
           + +L  + N  ++ E KD I + ++  +   +  + VD +F DPPY+  +N    +    
Sbjct: 73  RRALGYDINPKAL-ERKD-IFRADARKI--PIEDEKVDFVFIDPPYSTHINYSDEKNCIG 128

Query: 64  LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN--GTLWVIGSYHNIF---RIGTML 118
            + A TD          Y       +    R++K +    L+V  SY   +    IG  L
Sbjct: 129 KLTAKTD---------EYYNAMEKVISEIFRIMKKDRYMALYVSDSYEKDYPFMPIGFKL 179

Query: 119 QNLNFWILN--DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
             +        DIV    +     +G    +A E   +              +     N 
Sbjct: 180 FEIMSKYFMPIDIVSVVRHNKSLSKGNYHLSAIEYNYYLRGFNYLFIMYKQGNKTIDKNG 239

Query: 177 DVQMRS 182
            V +R+
Sbjct: 240 KVHLRN 245


>gi|255598579|ref|XP_002537039.1| conserved hypothetical protein [Ricinus communis]
 gi|223517714|gb|EEF25342.1| conserved hypothetical protein [Ricinus communis]
          Length = 58

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 23/35 (65%)

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
            GSG++G  A +    FIGI++  +Y++IA KRI 
Sbjct: 1   MGSGSTGKAAMREGFRFIGIDLTAEYVEIARKRIE 35


>gi|317010540|gb|ADU84287.1| TCGA site-specific m6A methyltransferase [Helicobacter pylori
           SouthAfrica7]
          Length = 387

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 51/140 (36%), Gaps = 17/140 (12%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
             K+    ++  L+++  +S+  I+ DPPYN + +   Y   H+                
Sbjct: 1   MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYEDVHA---------------- 44

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y+ +    L+  +  LK +G +++    + +  +  +   +     N +    +     
Sbjct: 45  DYEKWIEEHLILAKAALKQSGCIFISIDDNKMAEVKIIANEIFGT-RNFLGTFITKQATR 103

Query: 140 FRGRRFQNAHETLIWASPSP 159
              +     HE ++  + + 
Sbjct: 104 SNAKHINITHEYVLSYAKNK 123



 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 2/96 (2%)

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           L + +         +    LK + ++     D+      G++ L     + L  T KP  
Sbjct: 235 LHYQNRLIFKNNRPYEKYYLKESQDNCLSVLDFY--SRQGTKDLEKLGLKGLFKTPKPVG 292

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           L+  +L+ ST    IILD F GSGT+     +  R 
Sbjct: 293 LIKYLLLCSTPKNSIILDFFAGSGTTAQAVIEANRD 328


>gi|319794044|ref|YP_004155684.1| DNA methylase n-4/n-6 domain protein [Variovorax paradoxus EPS]
 gi|315596507|gb|ADU37573.1| DNA methylase N-4/N-6 domain protein [Variovorax paradoxus EPS]
          Length = 467

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 204 HPTQKPEALLSRILV--SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           +    PE+  SRI+   S +    +I DP+ GSGT+   A KL  +  G+++    + +A
Sbjct: 65  YYAGFPESFASRIIETASLSSKKAVIFDPWNGSGTTTYAAAKLGYNSHGMDLNPVMVLVA 124

Query: 262 TKR 264
             R
Sbjct: 125 RAR 127


>gi|330814977|ref|YP_004358682.1| type III DNA modification methyltransferase [Burkholderia gladioli
           BSR3]
 gi|327367370|gb|AEA58726.1| type III DNA modification methyltransferase [Burkholderia gladioli
           BSR3]
          Length = 677

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 57/161 (35%), Gaps = 21/161 (13%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRP---------------- 60
           ++ +I+G+++ VL+ L    A SV L++ DPPYN                          
Sbjct: 105 RNLMIEGDNLEVLKLLHKSYAGSVKLVYIDPPYNTGKEFVYPDNFTDSLRHYLALTGQAA 164

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
               + + T++  +F +   +       L     +L  +G + +    H +  +  +++ 
Sbjct: 165 GGVKLSSHTEASGRFHT--DWLNMMYPRLKLAFDLLARDGLIAIHIDEHELHALVLVMRE 222

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
           +        V       P    R     HE+++  +   + 
Sbjct: 223 IFGEENELGVAVWDKRNPKGDARGIAYQHESIVLFARDAEW 263



 Score = 42.3 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 69/209 (33%), Gaps = 19/209 (9%)

Query: 66  DAVTDSWDKFSSFEAYDAFTRA-----WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           DA+ D+     + +AY A+ RA        A    L P G ++ + S            +
Sbjct: 286 DAIADTTTIAEATQAYRAWLRAQTTLSGGEAMYDRLSPEGRVYRLVS-MAWPNKKRAPDD 344

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
               + + +  +   P+P  RG R   A    +      +               ++   
Sbjct: 345 YFIPLTHPVTGKPC-PVPE-RGWRNPPATMRELLDKGLIEFGADESTQPQRIYFLDENLH 402

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
            +   I    GS+  R K         KP    + ++   T   D+I+D F GSGT+   
Sbjct: 403 ENVPSILPFGGSDDARLKALAIPFDLPKPTDFAASLVSWLTGDDDLIVDCFAGSGTTAHA 462

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
             +               D A +R A VQ
Sbjct: 463 VMEAN-----------AADGARRRFALVQ 480


>gi|294788718|ref|ZP_06753959.1| DNA (cytosine-5-)-methyltransferase [Simonsiella muelleri ATCC
           29453]
 gi|294483200|gb|EFG30886.1| DNA (cytosine-5-)-methyltransferase [Simonsiella muelleri ATCC
           29453]
          Length = 387

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 67/181 (37%), Gaps = 23/181 (12%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
            +K+   ++   L +LP  +   ++ DPPYN Q     Y                   ++
Sbjct: 1   MNKLYVMDAEDCLNRLPENTFQTVYIDPPYNTQSKKFEYH----------------DHYD 44

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            ++ F  + +   R+V++  G L+V    + +  +  +   +     N +    +     
Sbjct: 45  DWEDFITSKIRKTRQVMQETGVLFVSIDDNKLIELRLICNEVFGKD-NFLGMFITRQTTR 103

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
              +     HE +I  + + +         A +    ++   +D L+P+ +  ++   ++
Sbjct: 104 SNAKHINTIHEYIIAYAKNKRKAP------AFEIKRLEIPFYADKLLPLMAEIKKEHKQN 157

Query: 200 G 200
           G
Sbjct: 158 G 158



 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 16/119 (13%)

Query: 154 WASPSPKAKGYTFNYDALKAANEDVQM----RSDWLIPICSGSERLRNKDGEKL-----H 204
           W+S     K +  N    K      +       D  + I +   R    D E+L      
Sbjct: 227 WSSKEKFIKLFNENKLLFKQGRPYEKHLLSESKDNAMSILNFYSRQGKHDLERLDLGNVF 286

Query: 205 PTQKPEALLSRILVSSTKPG-DIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQD 256
            T KP  ++  ++  S     D ILD F GSGT+     +        R F+  +++++
Sbjct: 287 STAKPVEMIKYLIKISQISHNDKILDFFAGSGTTAQAVLECNQEDNGQREFVLCQVQEE 345


>gi|240147217|ref|ZP_04745818.1| modification methylase XcyI [Roseburia intestinalis L1-82]
 gi|257200594|gb|EEU98878.1| modification methylase XcyI [Roseburia intestinalis L1-82]
          Length = 38

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 22/34 (64%)

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           GSGT+G  AK L R +IGIE+  +Y  +A  RI 
Sbjct: 1   GSGTTGLAAKSLDRRYIGIELNAEYCALAGARIG 34


>gi|310830654|ref|YP_003965755.1| hypothetical protein PPSC2_p0296 [Paenibacillus polymyxa SC2]
 gi|309250121|gb|ADO59687.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2]
          Length = 328

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 9/102 (8%)

Query: 5   NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL 64
           N        N + E  D     +++  L++ P +SVD++  DPPY         +   + 
Sbjct: 183 NRNRYGHITNDLNEKYDTNYHMDALEFLKQFPDESVDVVLFDPPY------SARQIKEAY 236

Query: 65  VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
                D+     +  +Y +  +       R+L+  G     G
Sbjct: 237 ESVGLDTQGGVLTRASYWSNMK---KEIARILRVGGKAISFG 275


>gi|330836523|ref|YP_004411164.1| DNA methylase N-4/N-6 domain-containing protein [Spirochaeta
           coccoides DSM 17374]
 gi|329748426|gb|AEC01782.1| DNA methylase N-4/N-6 domain protein [Spirochaeta coccoides DSM
           17374]
          Length = 245

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 5/95 (5%)

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
            +  N +++  + W  P          K      P      +   IL+  +  GD +LD 
Sbjct: 6   WEPDNFELETNTVWSFPDRGNWATHDAKWRGNWSPY-----IPRNILLRYSGEGDWVLDQ 60

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           F G GT+   AK L R+ IGI++  D ++    +I
Sbjct: 61  FVGGGTTLVEAKLLNRNIIGIDVNPDALNRCKAKI 95



 Score = 39.2 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 53/172 (30%), Gaps = 29/172 (16%)

Query: 1   MSQKNSLAINENQNSIFEWKDKI-----------IKGNSISVLEKLPAKSVDLIFADPPY 49
           +  +N + I+ N +++   K KI           +  NS   L  + A S+DLI   PPY
Sbjct: 73  LLNRNIIGIDVNPDALNRCKAKIDFECPNAGTVKLYQNSAGNLSFIEANSIDLICTHPPY 132

Query: 50  NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGSY 108
                      D        +      S   +    +     C RVLK       ++G  
Sbjct: 133 ----------ADIIHYSEDIEGDLSLMSVRDFLGAMKPVAEECYRVLKKGKFCAVLMGDT 182

Query: 109 H-------NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
                     F +  + +   F     I+  + N       +     H  L+
Sbjct: 183 RKKGCVIPMSFDVMKIFEAAGFVTKEIIIKEQHNCKATGYWKTNSIKHNFLL 234


>gi|300920848|ref|ZP_07137244.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 115-1]
 gi|300412154|gb|EFJ95464.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 115-1]
          Length = 646

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 68/197 (34%), Gaps = 29/197 (14%)

Query: 17  FEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           +  K+ +I+G+++ VL+ L    +  V LI+ DPPYN   +          +    +   
Sbjct: 108 YNSKNLMIEGDNLEVLKLLQKSYSGKVKLIYIDPPYNTGKDFVYPDNFQDNMKNYLEITG 167

Query: 74  KF-------SSFEAYDAFTRAWLLA-------CRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
           +        S+ E    F   WL          R +L  +G +++      I  +  +  
Sbjct: 168 QIENGKKISSNIEKGGRFHTNWLNMIFPRLHLARNLLTEDGVIFISMDDSEIDNLKKICS 227

Query: 120 NL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS-----PKAKGYTF------N 167
            +         +  +    P      F + H+ ++  + +      + KG++       +
Sbjct: 228 EIFGDDNFIANIVWQKKYSPQNDATYFSDMHDHILVYAKNAKLAKNQEKGWSIDLLPRTD 287

Query: 168 YDALKAANEDVQMRSDW 184
                  N D   R +W
Sbjct: 288 SQNKAYKNYDNDPRGEW 304



 Score = 53.1 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 16/91 (17%)

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKP--GDIILDPFFGSGTSGAVAKKLR------ 245
           +   K  +    T KP  L+ RIL  +T      I+LD F GSGT+     +        
Sbjct: 399 KKIMKGDDIFFDTPKPVKLIKRILDLATNKDKNAIVLDFFAGSGTTAQAVMEKNLEDNGS 458

Query: 246 RSFIGIEM-----KQDYIDIAT---KRIASV 268
           R FI +++        Y  IA    +RI   
Sbjct: 459 RRFILVQLPEPIESIKYKTIAKITAERIRKA 489


>gi|325978228|ref|YP_004287944.1| type III restriction-modification system methylation subunit
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
 gi|325178156|emb|CBZ48200.1| type III restriction-modification system methylation subunit
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
          Length = 650

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 60/141 (42%), Gaps = 17/141 (12%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  +    ++S+D I+ DPPYN+  +   +  ++              +
Sbjct: 188 NLIIKGNNLLALHTIQEIYSESLDCIYIDPPYNVPSSNNSFTYNNKF------------N 235

Query: 78  FEAYDAFTRAWLLACRRVL-KPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
              +  F +  L   + +L K +G L V    + +  +G +L  +       ++    NP
Sbjct: 236 HSTWLTFMKNRLEVAKTLLRKEDGVLIVAIDENEVNYLGVLLDEIFDECEKHLITVVHNP 295

Query: 137 MPNFRGRRFQNAHETLIWASP 157
               +G  F  ++E L +  P
Sbjct: 296 RGV-QGTNFSYSNEFLYFVFP 315



 Score = 40.0 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 8/53 (15%)

Query: 222 KPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYIDIA-TKRIAS 267
           +    ILD F GSGT+    + L       R FI IE + DYI+     R+ +
Sbjct: 482 RKNAKILDFFGGSGTTAHAVQMLNKDDDGNRIFITIE-QMDYINTVLVPRLLA 533


>gi|189460175|ref|ZP_03008960.1| hypothetical protein BACCOP_00811 [Bacteroides coprocola DSM 17136]
 gi|189433036|gb|EDV02021.1| hypothetical protein BACCOP_00811 [Bacteroides coprocola DSM 17136]
          Length = 634

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 73/210 (34%), Gaps = 35/210 (16%)

Query: 106 GSYHNIFRIGTMLQ--NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
                 +R+G +      +  ++  I       +   +G  ++   E + WA        
Sbjct: 283 NDPRGPWRLGPIFASGERHEGLMYTIKTPTGRLISPPKGSHWR-MLEDVFWAMYKDGRIM 341

Query: 164 YTFNYDALKAANEDVQMRSDWLIP--ICSGSERLRNKDGEKL----------HPTQKPEA 211
           +  N     A    ++   D ++P  I +  E    +D ++             T KP  
Sbjct: 342 FGMNGTGSPAIKLFLKDVQDGIVPRSIWTYDEVGHTQDAKREIQQIFPDEMPFDTPKPLK 401

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQD--------- 256
           L+ +I+  S +  D+I+D F GS T+     +        R +I +++ ++         
Sbjct: 402 LIKQIIQISCRNTDVIMDFFSGSATTAHAVMQQNAEDDGNRKYIMVQLPEETPDDSAARK 461

Query: 257 --YI---DIATKRIASVQPLGNIELTVLTG 281
             Y    +IA +RI         E  + T 
Sbjct: 462 AGYNTIPEIAKERIRRAGKKIKEESPLTTQ 491



 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 84/251 (33%), Gaps = 38/251 (15%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPD------------------H 62
           I+G+++ VL+ L       V +I+ DPPYN   N  +Y  D                   
Sbjct: 105 IEGDNLEVLKLLQKSYMGKVKMIYIDPPYNTG-NDFVYDDDFAVSQDDYDLFSGNVDELG 163

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
           +     T+S  +F S   + +     L+  + +L  +G++++    H I     ++  + 
Sbjct: 164 NRYRKNTESNGRFHS--DWCSMMYPRLMVAKSLLSDSGSIFLTLDDHEIVNGRKLMDEIF 221

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN------YDALKAANE 176
                       N            AH  ++  S + +      N        + K  N 
Sbjct: 222 GEKSFISTVIWENFYGRSNAAAISLAHNYILIYSKAGEEWKNIRNLLPRDLKSSEKYKNP 281

Query: 177 DVQMRSDWLI-PICSGSERLRNKDGEKLHPTQK----PEALLSRILV---SSTKPGDIIL 228
           D   R  W + PI +  ER          PT +    P+    R+L     +      I+
Sbjct: 282 DNDPRGPWRLGPIFASGERHEGLMYTIKTPTGRLISPPKGSHWRMLEDVFWAMYKDGRIM 341

Query: 229 DPFFGSGTSGA 239
               G+G+   
Sbjct: 342 FGMNGTGSPAI 352


>gi|256617066|ref|ZP_05473912.1| predicted protein [Enterococcus faecalis ATCC 4200]
 gi|257088371|ref|ZP_05582732.1| predicted protein [Enterococcus faecalis D6]
 gi|256596593|gb|EEU15769.1| predicted protein [Enterococcus faecalis ATCC 4200]
 gi|256996401|gb|EEU83703.1| predicted protein [Enterococcus faecalis D6]
          Length = 970

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 85/280 (30%), Gaps = 49/280 (17%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPAKS------VDLIFADPPY------------N 50
           I ++  S    K K+   +    +  L   S      + LI+ADPPY            N
Sbjct: 246 IKKSPESEPIEKSKVFNQD----MSALLKNSEFNQQRIKLIYADPPYTDMQYSRYYHLLN 301

Query: 51  LQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA--WLLACRRVLKPNGTLWVIG-- 106
           +        P  S        + +  +       + A   L         NG +  +   
Sbjct: 302 VAAKYDYPEPTISRGKFTKGLYTEGRNQSDLSKKSTAKGRLEELFNYCHENGVVLALSYA 361

Query: 107 ---------SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
                    +      I  ++        N  V  +          R  +A E   +   
Sbjct: 362 YPKDESNQKTDRYTVSIEELVDIAKRVFGNKRVQIELKDY-QHANNRNSSAKEVFEYLIL 420

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
             +   +   YD ++  NE   +      P+ +               +QK   ++  ++
Sbjct: 421 CGQEV-HKSQYDLIELKNEIKSLTPTSKNPVYNTHLYW----------SQKSFNVIDSLI 469

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKK--LRRSFIGIEMKQ 255
              +   DI+ DPF GSG +   A +  + R  IG ++ +
Sbjct: 470 SHLSSENDIVFDPFMGSGVTVLEAVQGNMNRIGIGCDVNE 509



 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 43/116 (37%), Gaps = 13/116 (11%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA----------VTDSWDKFSSFEAYDAF 84
           +P  SV LI  DPPY  Q+    Y   +               V+ + ++    + Y   
Sbjct: 749 IPDDSVSLIITDPPYMDQVLYSEYMQLYKPFIGVGFNLHDEIIVSSAPERNKGKDEYFTL 808

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHN---IFRIGTMLQNLNFWILNDIVWRKSNPM 137
                  C+R LK N  + +     N     ++  +L++  F  ++    +KS  +
Sbjct: 809 LYEVFEMCKRKLKENNIMCLFFHDSNLDVWVKLLQILESNGFKFISQEHIKKSKTV 864


>gi|91200064|emb|CAJ73107.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 266

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 3/77 (3%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           W  P       LR ++  + +    P  ++  +L   T+PGD+++DP  G+GT+  VAK+
Sbjct: 13  WDFP---SQHYLREQEHAQNYKGATPSYIIWNLLQRYTRPGDVVIDPMCGAGTTLDVAKE 69

Query: 244 LRRSFIGIEMKQDYIDI 260
           L R  +G ++     DI
Sbjct: 70  LNREALGFDLNPTRKDI 86


>gi|86142911|ref|ZP_01061333.1| type II R/M system [Leeuwenhoekiella blandensis MED217]
 gi|85830356|gb|EAQ48815.1| type II R/M system [Leeuwenhoekiella blandensis MED217]
          Length = 415

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
            P +L    +   T   D++ DPF G GT+   ++ L R  IG ++  
Sbjct: 30  FPPSLAKYFIKYFTDENDLVFDPFSGRGTTILESRILNRKSIGSDLNP 77



 Score = 44.2 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 12/96 (12%)

Query: 23  IIKGNSISV-----LEKLPAKSVDLIFADPPYN--LQLNGQLYRPDH---SLVDAVTDSW 72
           I + ++  +     L+K   K VDLI   PPY   +    Q +       S    +++  
Sbjct: 228 IFECDAKEISKSEKLKKYQGK-VDLILTSPPYLGIVNYAKQNWIRSWFLDSDPIEISEKL 286

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNG-TLWVIGS 107
           D   +   +  F++  L   +++LKPNG  ++VIG 
Sbjct: 287 DDDLNINQWVQFSKKTLFEFKKMLKPNGVAVFVIGD 322


>gi|253579249|ref|ZP_04856519.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849347|gb|EES77307.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 203

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 26/43 (60%)

Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
             +K  D ILD F GSGT+   AK L R+ IG+++  + + ++
Sbjct: 2   RYSKKKDWILDQFLGSGTTLIEAKLLGRNAIGVDINSEAVKLS 44



 Score = 42.7 bits (99), Expect = 0.092,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 54/169 (31%), Gaps = 26/169 (15%)

Query: 10  NENQNSIFEWKDKII--KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
           N N N   + K KI   +GN+ + L  +  +S+DLI   PPY       + R    +   
Sbjct: 45  NTNLNFTCQEKSKIFTKQGNANN-LSFIKDESIDLICTHPPY-----ADIIRYSKEIPGD 98

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNIFRIGTM-------LQ 119
           ++        ++ +            RVLK  G   ++IG       +  +         
Sbjct: 99  ISH-----LKYKDFLQELEQVAKESYRVLKKQGICAFMIGDIRKKGYVLPLGMNSMQKFV 153

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQN-----AHETLIWASPSPKAKG 163
           +  F     ++  + N          +      AHE +     +     
Sbjct: 154 DTGFKFKEIVIKEQHNCRSTDYWEGKERKFLMLAHEYIFILEKADDHNP 202


>gi|169838646|ref|ZP_02871834.1| Site-specific DNA-methyltransferase (adenine-specific) [candidate
           division TM7 single-cell isolate TM7a]
          Length = 284

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 22/108 (20%)

Query: 201 EKLHPTQKPEALLSRI--LVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGI- 251
           E L    KP  L+ R+  + + T  GD+ILD F GSGT+     +L       R +I + 
Sbjct: 44  ESLFDYPKPTQLIKRLMQISTDTNNGDVILDFFAGSGTTAHAVDELNAEDGGNRRWICVQ 103

Query: 252 ------EMKQDY-------IDIATKRIASVQPLGNIELTVLTGKRTEP 286
                 E  + +        DIA +RI         +       R  P
Sbjct: 104 LPELTDEKSEAHKAGYRTIADIARERIRRAGAKIRADQANKLASRDTP 151


>gi|291294974|ref|YP_003506372.1| Site-specific DNA-methyltransferase (adenine-specific) [Meiothermus
           ruber DSM 1279]
 gi|290469933|gb|ADD27352.1| Site-specific DNA-methyltransferase (adenine-specific) [Meiothermus
           ruber DSM 1279]
          Length = 629

 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 24/122 (19%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYN------------------LQLNGQLYR 59
           + II+G+++ VL+ L       V +I+ DPPYN                  L+  GQL  
Sbjct: 91  NVIIEGDNLEVLKLLQQAYHGKVKMIYIDPPYNTGNDFVYPDDFREGIRQYLRFTGQLSE 150

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
            D   +    +   +  S   + +     L   R +L+ +G ++V    H +  +  ++ 
Sbjct: 151 -DGVRLTTTPEEGGRIHS--RWLSMMYPRLQLARSLLRDDGVIFVSIDDHELHNLRAIMD 207

Query: 120 NL 121
            +
Sbjct: 208 EI 209



 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 65/189 (34%), Gaps = 27/189 (14%)

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD----ALKAANE 176
           ++     +I    +      R    +N  E  +W   + + +   +       A   A+ 
Sbjct: 306 IHPKTGKEIWPSPTRVWAYSREVHERNVSENRVWWGLNQENETPRYKRFLSEVAGVVADT 365

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG--DIILDPFFGS 234
             +              +    +      T KP  LL R+L  +T+P   DI+LD F GS
Sbjct: 366 WWEHTDVGHTDEAKKEFKSLFGEDADAFDTPKPVRLLKRLLQLATEPDAGDIVLDFFAGS 425

Query: 235 GTSGAVAKKLR------RSFIGIEM-----KQDY----------IDIATKRIASVQPLGN 273
           GT G    ++       R F+ +++       +Y          +  A +RI S      
Sbjct: 426 GTLGQAVLEMNQEDGGDRRFVLVQLPEPTPNPNYPTISSVTRGRVQKAAERIRSGDEKSA 485

Query: 274 IELTVLTGK 282
           ++L    G+
Sbjct: 486 VQLLEPDGQ 494


>gi|303240592|ref|ZP_07327107.1| Site-specific DNA-methyltransferase (adenine-specific) [Acetivibrio
           cellulolyticus CD2]
 gi|302591829|gb|EFL61562.1| Site-specific DNA-methyltransferase (adenine-specific) [Acetivibrio
           cellulolyticus CD2]
          Length = 512

 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 57/163 (34%), Gaps = 20/163 (12%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSL------VDAVTDSWDK 74
           I+G+++ VL+ L       +  I+ DPPYN   +  +Y+ D S+           D    
Sbjct: 102 IEGDNLEVLKLLQESYMNKIKCIYIDPPYNTGKD-FIYKDDFSMGTTQYFAKCRQDENCN 160

Query: 75  FSSFEA---------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFW 124
             S ++         +       L   R +L+ +G ++V    + ++ +  M+  +    
Sbjct: 161 RLSEDSEVHGRFHSGWLTMMYPRLKLARNLLQDDGVIFVSIDNNELYNLQWMMNEIFGES 220

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
              +         P     + +   E ++    +     Y  +
Sbjct: 221 NYVETFIWTKTCTPPSLSNKSRKTAEYVLCYEKNINNIKYYGD 263



 Score = 39.6 bits (91), Expect = 0.77,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 22/96 (22%)

Query: 202 KLHPTQKPEALLSRILVSSTK--PGDIILDPFFGSGTSGAVAKKLR------RSFIGI-- 251
           +     KP +L+ +I+    K     I+LD F GS T+     ++       R +I +  
Sbjct: 401 RCFDYPKPVSLIKKIINMIVKDEKEAIVLDFFSGSATTAHAVMEINAYDAGRRKYIMVQK 460

Query: 252 -EMKQ-----------DYIDIATKRIASVQPLGNIE 275
            E              D   I  +RI         E
Sbjct: 461 PEQVPADSIAYKAGYRDICQIGKERICRAAKKLKEE 496


>gi|294783862|ref|ZP_06749184.1| type III restriction-modification system, methylase subunit
           [Fusobacterium sp. 1_1_41FAA]
 gi|294479674|gb|EFG27453.1| type III restriction-modification system, methylase subunit
           [Fusobacterium sp. 1_1_41FAA]
          Length = 627

 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/189 (12%), Positives = 62/189 (32%), Gaps = 24/189 (12%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQLN-----------------GQLYRPDHS 63
           I+G+++ VL+ L       + +I+ DPPYN   +                       + +
Sbjct: 97  IEGDNLEVLKLLQKSYHGKIKMIYIDPPYNTGKDFVYKDNFTDNIENYKEITGQTNKEGT 156

Query: 64  LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN- 122
            +   TD+  ++ S   +       L   R +L  +G +++    +    +  +   +  
Sbjct: 157 KLTTNTDTDGRYHSN--WLNMMYPRLKLARNLLTDDGVIFISIDDNEQANLKRLCDEIFG 214

Query: 123 -FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
               + D + +  +   + +          + ++             +    +N D   +
Sbjct: 215 EENFIADFIRKTKSTTNDAKTGINYQHEFLICYSKNFQYVNLLGGEKNLENYSNPDSDPK 274

Query: 182 SDWLIPICS 190
            DW+    S
Sbjct: 275 GDWISDNPS 283



 Score = 51.1 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 65/207 (31%), Gaps = 31/207 (14%)

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE- 176
           ++N  F I N    ++  P      R  +N  +  I        K +  N          
Sbjct: 289 MENNYFSIKNPYTGKEDYPPVGNYWRFSKNTIQRYIDEGYIVFKKEHKANERGFIFKRYK 348

Query: 177 ----------DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
                     D     D L      ++ L      +     K    L +IL+ ST+  DI
Sbjct: 349 NELKTLKQTFDSLFFVDNLFMNQKATKELLELKLAEYFLYPKGVKFLKKILLHSTEKEDI 408

Query: 227 ILDPFFGSGTSGAVAKKL------RRSFIGI-------EMKQDY-------IDIATKRIA 266
           ILD F GS T+     +L       R +I +       E  + Y        +I  +RI 
Sbjct: 409 ILDFFSGSATTAHSVMQLNGEDGGNRKYIMVQLPELCDEDSEAYKAGYKNICEIGKERIR 468

Query: 267 SVQPLGNIELTVLTGKRTEPRVAFNLL 293
                   + ++    R +  V F + 
Sbjct: 469 RAGEKIKSDESLPLENREKLDVGFKVF 495


>gi|281420026|ref|ZP_06251025.1| DNA methylase N-4/N-6 [Prevotella copri DSM 18205]
 gi|281405826|gb|EFB36506.1| DNA methylase N-4/N-6 [Prevotella copri DSM 18205]
          Length = 673

 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 67/196 (34%), Gaps = 14/196 (7%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDH---SLVDAVTDSWD 73
              +I+G++   L  L       VD+I+ DPPYN   +G  Y+         D      +
Sbjct: 70  THILIEGDNYHALTCLNYTHQGKVDVIYIDPPYNTGSDGFTYKDKRFLDKYPDGTQLPKN 129

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--ILNDIVW 131
                 ++ +F    +     +LK +G +++  +      +  +  ++  +   +  I  
Sbjct: 130 HPLRHSSWLSFMDKRMKLASSLLKEDGVIYISINEEEYANLKLLCDSVFGYSNYITTITI 189

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
           +  +     +G +  +    L+        K   FN       N D +     +  +   
Sbjct: 190 KVRHENRILKGDKPMHETTELLLMYR----KSDKFNISKRIVDNSDPKDYIYEIEELIDN 245

Query: 192 SERLR--NKDGEKLHP 205
            E +    K  +  HP
Sbjct: 246 PEIIMMGGKKVKVFHP 261



 Score = 37.7 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 207 QKPEALLSRI--LVSSTKPGDIILDPFFGSGTSGAV 240
           +KP A +  +  +        ++LD F GSG++G  
Sbjct: 379 KKPIAFIQYLLKIAKGNNKNLVVLDFFAGSGSTGHA 414


>gi|220907136|ref|YP_002482447.1| DNA methylase N-4/N-6 domain-containing protein [Cyanothece sp. PCC
           7425]
 gi|219863747|gb|ACL44086.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7425]
          Length = 739

 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 52/128 (40%), Gaps = 3/128 (2%)

Query: 131 WRKSNPMPNFRGRRFQNAHE-TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
                P+  F+ +  +N  E  LI+ SP     G +F Y   + A        +  +   
Sbjct: 122 QDDKQPILYFQLQDIENYWEQMLIYLSPDSFQSGKSFTYATTQKAITTNFNYLNRPLLEE 181

Query: 190 SGSERLRNKDGEKLH--PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
              ++   K    +H   T++   ++   + + ++ GD +LDPF GSG +   +    R 
Sbjct: 182 LPVKKQLAKRHFGVHGYFTKQTWNVVQEYIRNFSQIGDTVLDPFGGSGVTAIESLMTNRK 241

Query: 248 FIGIEMKQ 255
            I I++  
Sbjct: 242 AIHIDINP 249



 Score = 42.7 bits (99), Expect = 0.085,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 57/157 (36%), Gaps = 19/157 (12%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG----- 55
           ++ K  ++I  N  +I     +++KG +   L  + +++VD I+ DPPY  ++       
Sbjct: 403 IAAKKEISIKINNQTIQNA--QVLKGTATD-LSFIRSETVDYIYTDPPYGKKIPYLDLSI 459

Query: 56  ------QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN---GTLWVIG 106
                  L   +        +  ++  + + Y+      +    RVLK       ++   
Sbjct: 460 MWNSWLDLEVTEEDYEQEAIEGGERNKTKDEYNQLIAKSIQEMYRVLKFERWMSFVFAHK 519

Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
                  I    +   F        ++ N  P+F+ R
Sbjct: 520 DPEFWHLIVETAEKCGFEYAG--AVKQGNGQPSFKKR 554


>gi|172040052|ref|YP_001799766.1| hypothetical protein cur_0372 [Corynebacterium urealyticum DSM
           7109]
 gi|171851356|emb|CAQ04332.1| hypothetical protein cu0372 [Corynebacterium urealyticum DSM 7109]
          Length = 261

 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           E +H      A++  ++ + + PGD++ DPF G GT+   A +L R   GIE+  + +  
Sbjct: 56  EDVHMCT---AIVDHVIRAYSAPGDLVFDPFAGFGTTLIRAVRLDRRAGGIELLPERVAQ 112

Query: 261 ATK 263
              
Sbjct: 113 IRA 115



 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 20/111 (18%)

Query: 23  IIKGNSISVLEKLPAKS-----------VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
           ++ G++  +L  L + S           VDL+   PPY     G+         D +   
Sbjct: 122 VVAGDARRILPMLASSSEHRQENEPRPVVDLVLTSPPYMAATEGE--------ADPLEAY 173

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGT-LWVIGSYHNIFRIGTMLQNL 121
                 +  Y A        C R++ P G  +W +G   +   +  ++ + 
Sbjct: 174 ECGGGDYRRYLAELGGVAAECARLVVPGGHVVWNVGDIRHAGALTPLIADC 224


>gi|332652973|ref|ZP_08418718.1| type III restriction-modification system, methylase subunit
           [Ruminococcaceae bacterium D16]
 gi|332518119|gb|EGJ47722.1| type III restriction-modification system, methylase subunit
           [Ruminococcaceae bacterium D16]
          Length = 621

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 65/199 (32%), Gaps = 36/199 (18%)

Query: 103 WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
           +        FR  T+L +       + +  +S+        R++   ET+       +  
Sbjct: 276 YPHEDEGGKFRTTTILTSNRGTFRRETMRFESHGYSPNEDFRWKAGKETI---DRLYETN 332

Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICS-------------GSERLRNKDGEKLHPTQKP 209
               N D +    +     SD L PI +              SE       +    T KP
Sbjct: 333 HMFINDDGVPMEKKYAHEESDPLYPIYTYIDSDLSGTAENGKSELNSLVGKQHGFDTVKP 392

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDY------ 257
             LL  +  + T  G IILD F GSGT      +        R +I +++++        
Sbjct: 393 VQLLKYMTQTFTDKGGIILDFFSGSGTIAQAVMEQNSEDSAQRKYILVQIEERCNPDGEA 452

Query: 258 --------IDIATKRIASV 268
                    DIA KRI   
Sbjct: 453 FRAGFRTVCDIAKKRIRQA 471



 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 55/158 (34%), Gaps = 24/158 (15%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY-------RPDHSLVDAVTDSWD 73
           I+G+++ VL+ L       V +I+ DPPYN   +  +Y       + ++ +V    D + 
Sbjct: 101 IEGDNLEVLKILQESYLGKVKMIYIDPPYNTGSDKFMYPDNFSMDKEEYDIVSGRVDEYG 160

Query: 74  KFSSFEAYD---AFTRAWLLACR-------RVLKPNGTLWVIGSYHNIFRIGTMLQNL-N 122
                E  +    F   W             +L  +G + V    + +  +  ++  +  
Sbjct: 161 NNIFAENNNSDPRFHSKWCSMIYERLLLSRNLLSEDGVILVSIGDNELKNLQAIMDEIFG 220

Query: 123 FWILNDIVWRKSNPMPNFRGR---RFQNAHETLIWASP 157
                     KS   P   G    R Q   E ++  S 
Sbjct: 221 ASNQVCYFVWKSRAKPTNAGNARFRPQKVSEYILVYSK 258


>gi|303252376|ref|ZP_07338542.1| hypothetical protein APP2_1352 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302648835|gb|EFL79025.1| hypothetical protein APP2_1352 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
          Length = 315

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 7/88 (7%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGSGTSGAVAKKL-- 244
             +G++ L+N  GE      KP  L+SR L       +  +LD F GSGT+      L  
Sbjct: 14  TTNGTQLLKNLFGEHRFTNPKPVGLISRFLQLGLYKNNQTVLDYFAGSGTTAHAVINLNR 73

Query: 245 ----RRSFIGIEMKQDYIDIATKRIASV 268
                R +I +E  + +  +   R+  V
Sbjct: 74  EDNGNRKYILVEQGEYFDTVLKPRVQKV 101


>gi|205372117|ref|ZP_03224933.1| site-specific DNA-methyltransferase (adenine-specific) [Bacillus
           coahuilensis m4-4]
          Length = 381

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 55/150 (36%), Gaps = 7/150 (4%)

Query: 17  FEWKDKIIKGNSISVLEKLPA--KSVDLIFADPPYNLQ----LNGQLYRPDHSLVDAVTD 70
            + ++ I++G ++  +  L    + VDLI  DPPYN       N +     +        
Sbjct: 67  QQSRNIILEGENLQGMVTLYKYREQVDLILTDPPYNTGHYFRYNDKWDSDPNDPDLGTLV 126

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDI 129
           S +  S    +       L    ++LKP G L +    + +F +G M+  +        I
Sbjct: 127 SEEDGSKHTKWMKAMMPRLHMMWKMLKPTGVLAICIDDNELFHLGMMMNEVFGEENRIGI 186

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
           +  + +  P    +      E ++  +   
Sbjct: 187 INWQKSYAPKSDSKHMSTGTEYVLVYAKDK 216


>gi|238025694|ref|YP_002909925.1| hypothetical protein bglu_1g00160 [Burkholderia glumae BGR1]
 gi|237874888|gb|ACR27221.1| Hypothetical protein bglu_1g00160 [Burkholderia glumae BGR1]
          Length = 674

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 56/159 (35%), Gaps = 17/159 (10%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLN-------GQLYRPDHSLVDAVT 69
           ++ +I+G+++ VL+ L    A SV L++ DPPYN               R   +L     
Sbjct: 102 RNLMIEGDNLEVLKLLHKSYAGSVKLVYIDPPYNTGREFVYPDNFADSLRHYLALTGQAA 161

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLK-------PNGTLWVIGSYHNIFRIGTMLQNLN 122
                 S  EA   F   WL      LK        +G + +    H +  +  +++ + 
Sbjct: 162 GGVKLSSHTEASGRFHTDWLNMMYPRLKLAFDLLARDGLIAIHIDEHELPALVLVMREIF 221

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
                  V       P    R     HE+++  +   + 
Sbjct: 222 GEENELGVAVWDKRNPKGDARGLAYQHESIVLFARDAEW 260


>gi|258512351|ref|YP_003185785.1| putative DNA modification methylase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257479077|gb|ACV59396.1| putative DNA modification methylase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 369

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 3/92 (3%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           + T  P A   R+L  +      +LDPF G GT+   A+      +G+++    + IA  
Sbjct: 22  YYTMFPLAFPLRVLAGA--ERGWVLDPFCGRGTTNFAARLAGFPTVGVDINPIAVAIAQA 79

Query: 264 RIASVQPLGNIELTVLTGKRTEP-RVAFNLLV 294
           ++AS    G +E      +   P  V      
Sbjct: 80  KLASTTVHGVVERCQQILESEAPGDVPDGEFW 111


>gi|284106587|ref|ZP_06386264.1| DNA methylase N-4/N-6 domain protein [Candidatus Poribacteria sp.
           WGA-A3]
 gi|283830060|gb|EFC34333.1| DNA methylase N-4/N-6 domain protein [Candidatus Poribacteria sp.
           WGA-A3]
          Length = 151

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 11/82 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I+ G++  +L +L  +S+      PPY    +        +            SS E Y
Sbjct: 17  EILLGDTREILPQLETRSIQCCVTSPPYWGLRDYDHSAQIGTE-----------SSPEEY 65

Query: 82  DAFTRAWLLACRRVLKPNGTLW 103
                      RR L  +GT W
Sbjct: 66  VENLVRIFREVRRALTDDGTFW 87


>gi|217423829|ref|ZP_03455329.1| type III DNA modification methyltransferase [Burkholderia
           pseudomallei 576]
 gi|217392892|gb|EEC32914.1| type III DNA modification methyltransferase [Burkholderia
           pseudomallei 576]
          Length = 671

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 54/153 (35%), Gaps = 21/153 (13%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNG----------------QLYRP 60
           ++ +I+G ++ VL+ L    A  V L++ DPPYN   +                      
Sbjct: 101 RNLMIEGENLEVLKLLQKSYAGRVKLVYIDPPYNTGKDFVYPDNFTDSLRHYLELTGQTA 160

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
               V + TD+  +F +   +       L   R +L  +G + V    H    +  +++ 
Sbjct: 161 GGKRVTSHTDASGRFHT--DWLNMIYPRLKLARDLLTEDGVIAVHIDEHEQHALVLVMRE 218

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           +        V       P    R     HE+++
Sbjct: 219 IFGEDNELGVAVWDKRNPKGDARGIAYQHESIV 251



 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 52/171 (30%), Gaps = 11/171 (6%)

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF-RGRRFQNA 148
            A    +  +G ++ + S            +   + +  +      P P   RG R   A
Sbjct: 311 EAMYDRISADGRVYRLVS-MAWPNKKKAPDD---YFVPLVHPVTGKPCPVPERGWRNPPA 366

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
               +      +               ++    +   +    GS+    K         K
Sbjct: 367 TMRALIDKGLVEFGADETTQPQRIYFLDENMYENVPSVLPFGGSDDALMKSLGIPFDQPK 426

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
           P    + I+   T   D+I+D F GSGT+      L       R ++ +++
Sbjct: 427 PVEFAASIIGWCTDGDDLIVDFFGGSGTTAHAVMALNAADGGHRRYVLVQL 477


>gi|260891078|ref|ZP_05902341.1| type III restriction-modification system, Mod subunit [Leptotrichia
           hofstadii F0254]
 gi|260859105|gb|EEX73605.1| type III restriction-modification system, Mod subunit [Leptotrichia
           hofstadii F0254]
          Length = 669

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 48/137 (35%), Gaps = 18/137 (13%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLN---GQ 56
            K    + ++  +    ++  I+G+++ VL+ L      S+ +I+ DPPYN   +     
Sbjct: 74  NKTLKFVAKDSKNADTTENIYIEGDNLEVLKLLRQNYYNSIKMIYIDPPYNTGNDFVYND 133

Query: 57  LYRPDHSLVDAVTDSWDK------------FSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
            ++ D    D      D+                  +       L   R +L  +G +++
Sbjct: 134 TFKKDGDESDKEEGYKDETGKRLEKNPRSTNRYHAKWLDMMYPRLKLARDLLTDDGVIFI 193

Query: 105 IGSYHNIFRIGTMLQNL 121
               +    +  +   +
Sbjct: 194 SIDDNEQANLKRLCDEI 210



 Score = 40.4 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 25/107 (23%)

Query: 208 KPEALLSRILVSS-TKPGDIILDPFFGSGTSGAVAKKL------RRSFIGI-------EM 253
           KP +L+  +   S     DII+D F GS T+     +L       R +I +       E 
Sbjct: 415 KPSSLIRYLAEISRINNDDIIMDFFSGSATTAHAVMQLNSEDNGNRKYIMVQLPETTDEK 474

Query: 254 KQDY-------IDIATKRI----ASVQPLGNIELTVLTGKRTEPRVA 289
            + +        +I  +RI      ++       + L       +V 
Sbjct: 475 SEAFKAGYKNIAEIGKERIRRAGEKIKQEIEEYNSNLKLGEEPKKVP 521


>gi|225620140|ref|YP_002721397.1| hypothetical protein BHWA1_01213 [Brachyspira hyodysenteriae WA1]
 gi|225214959|gb|ACN83693.1| hypothetical protein BHWA1_01213 [Brachyspira hyodysenteriae WA1]
          Length = 246

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 33/63 (52%)

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
            ++  K +    P  ++  +L   TK  D+++DP  GSGT+  VA++L R  +G ++   
Sbjct: 24  EEEKHKHYIGATPSYIIWNLLNRYTKEKDLVVDPMAGSGTTIDVARELGRRALGYDINPK 83

Query: 257 YID 259
            + 
Sbjct: 84  ALQ 86



 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 54/167 (32%), Gaps = 18/167 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I K ++  +   +  + VD +F DPPY+  +N    +     + A  +          Y 
Sbjct: 90  IFKADARKI--PIEDEKVDFVFIDPPYSTHINYSDEKNCIGKLTAREN---------EYY 138

Query: 83  AFTRAWLLACRRVLKPN--GTLWVIGSYHNIF---RIGTMLQNLNFWILN--DIVWRKSN 135
                 +    R++K +    L+V  SY   F    IG  L  +        DIV    +
Sbjct: 139 EAMEKVINEIFRIMKKDRYMALYVSDSYEKGFPFMPIGFKLFEIMSKYFMPIDIVSVIRH 198

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
                +G     A E   +              +     N  V +R+
Sbjct: 199 NKTLNKGNYHIAAAENNFYLRGFNYLFIMYKKGNKTIDINGKVHLRN 245


>gi|218666381|ref|YP_002425657.1| modification methylase, putative [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|218518594|gb|ACK79180.1| modification methylase, putative [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 204

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 35/70 (50%)

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           R     G   H   +P  +    +   T+P D+++DPF G+  +G  A++L R ++  E 
Sbjct: 118 RHAKAMGLPTHGAMQPTTIPDFFIRLLTQPDDLVVDPFGGTVKTGLAAERLGRRWLVTEW 177

Query: 254 KQDYIDIATK 263
             +Y+  A++
Sbjct: 178 MLEYLRGASE 187


>gi|307273969|ref|ZP_07555179.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0855]
 gi|306509277|gb|EFM78337.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0855]
          Length = 341

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 68/203 (33%), Gaps = 24/203 (11%)

Query: 6   SLAINENQNSIFEWKDKI-IKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD 61
           +L  N +++  F+  + + I+G+++ VL+ L    +  V LI+ DPPYN   +       
Sbjct: 79  TLKPNSSKSKKFDDTNNLYIEGDNLEVLKILQKSYSDKVKLIYVDPPYNTGKDFVYKDNF 138

Query: 62  HSLVDAVTDSWDKFSS---------------FEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
              +D   +   +  S                  +       L   R +L  +G +++  
Sbjct: 139 EDSLDNYLEQTGQVDSEGNNFSVNPETNGRYHTDWLNMMYPRLKLARNLLTEDGVIFISI 198

Query: 107 SYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS----PKA 161
                  +  +   +         V  +    P    + F  +H+ ++    +       
Sbjct: 199 DDAEQANLKKIADEIFGEKNFLAQVIWERAYSPVNLKKNFSESHDYILVYGKNASIIESN 258

Query: 162 KGYTFNYDALKAANEDVQMRSDW 184
                +    + +N D   R DW
Sbjct: 259 GLKRSDDANDRYSNPDNDPRGDW 281


>gi|237740843|ref|ZP_04571324.1| LOW QUALITY PROTEIN: type III restriction-modification system
           methylation subunit [Fusobacterium sp. 4_1_13]
 gi|229431140|gb|EEO41352.1| LOW QUALITY PROTEIN: type III restriction-modification system
           methylation subunit [Fusobacterium sp. 4_1_13]
          Length = 633

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 83/255 (32%), Gaps = 25/255 (9%)

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
           RP+        +  D   +   YD      L     V   N  L              +L
Sbjct: 252 RPNLGYTIYYNEETDDKIALSDYDIEKAKMLNDEDVVYLDNKELIEKNYIKIRPPKKGIL 311

Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
                W L+     K+          +    +  I +      KG  F Y      ++++
Sbjct: 312 LGCWTWSLDKFKSEKNKIKIEKTQNGYAVRKKEFIISENIFDVKGKKFIY-----ESKNI 366

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
            ++S W      G++ L      K+    K + L+ ++L+  TK  +IILD F GS T+ 
Sbjct: 367 NIKSIWNFSSSEGTKELNKLFQAKVFENSKNKELIKKLLLIITKSDEIILDFFSGSATTA 426

Query: 239 AVAKKL------RRSFIGI-------EMKQDY-------IDIATKRIASVQPLGNIELTV 278
               +L       R +I +       E  + Y        +I  +RI         + ++
Sbjct: 427 HSVMQLNAEDGGNRKYIMVQLPELCDESSEAYKAGYKNICEIGKERIRRAGEKIKSDESL 486

Query: 279 LTGKRTEPRVAFNLL 293
               R +  + F + 
Sbjct: 487 SLENREKLDIGFKVF 501



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 44/152 (28%), Gaps = 18/152 (11%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF----- 75
           I+G+++ VL+ L       + +I+ DPPYN   +          ++   +   +      
Sbjct: 59  IEGDNLEVLKLLQKSYHGKIKMIYIDPPYNTGKDFVYKDNFTDNIENYKEITGQINKEGI 118

Query: 76  ----------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
                          +       L   R +L  +G +++    +    +  +   +    
Sbjct: 119 KLTTNTETNGRYHSNWLNMMYPRLKLARNLLTDDGVIFISIDDNEQANLKKICDEIFGEE 178

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
                               Q  HE ++  S 
Sbjct: 179 NFIGTIIYDKGNAQNDAINLQKNHEYMLVCSK 210


>gi|293606053|ref|ZP_06688418.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292815508|gb|EFF74624.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 585

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 48/114 (42%), Gaps = 10/114 (8%)

Query: 18  EWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPD-------HSLVDA 67
           E  + I++G+++  L+ L       V  I+ DPPYN    G +Y  +         L + 
Sbjct: 36  ESGNLIVQGDNLHALKALLPRYAGQVKCIYIDPPYNTGNEGWVYNDNVNSPEIRKWLGEV 95

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
           V    +     + +       L+  ++ L+ +G ++V    + +  +  +++ +
Sbjct: 96  VGKEGETLDRHDRWLCMMYPRLVLLKQFLREDGAIFVSIDDNELGNLQALMREI 149



 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 51/133 (38%), Gaps = 24/133 (18%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
           G    P  K   +++ ++   T+PGDI+LD F GSGT+     +         +FI +E+
Sbjct: 354 GAGAFPFPKDSEVIADLVGMVTEPGDIVLDSFGGSGTTAHAVLRKNQHLKKPLNFILVEI 413

Query: 254 KQDYIDI-ATKRIASVQPLGNIELTVLTGKRTEPRVAFN------LLVERGLIQPGQILT 306
             +  +     RI           T L GK+  P            L E       + L 
Sbjct: 414 DSNTAETKTRTRIKKAIEG----YTPLVGKKKTPVPGLGGGFQYFRLSE-------EPLF 462

Query: 307 NAQGNISATVCAD 319
            A G I +TV  D
Sbjct: 463 QADGKIRSTVSYD 475


>gi|54020499|ref|YP_115937.1| hypothetical protein mhp427 [Mycoplasma hyopneumoniae 232]
 gi|53987672|gb|AAV27873.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232]
          Length = 352

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 56/153 (36%), Gaps = 10/153 (6%)

Query: 96  LKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
           ++ NG ++  G     ++     ++     + D  WR +    ++  +        +++ 
Sbjct: 94  IEYNGKIYYAGGSQEKWQA----RHQGNRAVKDWRWRWARKKLDWGIKNG-----FIVFK 144

Query: 156 SPSPKAKGYTF-NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
           +    +K Y F + +  K            L     G++  +N    K+    KP  L+ 
Sbjct: 145 NEKVFSKQYQFVDNNNQKIERVSKFSNLILLAQGTEGTQEQKNIFSTKVFDHPKPIELIK 204

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
            ++         ILD F GSGT+G     L R 
Sbjct: 205 YLINIHPNKNAKILDFFAGSGTTGHAVWDLNRQ 237


>gi|293190850|ref|ZP_06609012.1| type III restriction-modification system methyltransferase
           [Actinomyces odontolyticus F0309]
 gi|292820749|gb|EFF79711.1| type III restriction-modification system methyltransferase
           [Actinomyces odontolyticus F0309]
          Length = 623

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 74/202 (36%), Gaps = 27/202 (13%)

Query: 9   INENQNSIFEW---KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYR--- 59
           + + +NS+ +W   ++  I+G+++ VL+ L       + +I+ DPPYN   +   +    
Sbjct: 79  MPDKENSV-DWDATQNVFIEGDNLEVLKVLQKHYYGKIKMIYIDPPYNTGKDFVYHDDFR 137

Query: 60  -------------PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
                         +   V + T+S  ++ S   +       L   R +L P+G +++  
Sbjct: 138 DGMSAYLEWTNQVNESGKVSSNTESDGRYHSN--WLNMMYPRLKLARNLLVPDGLIFLSI 195

Query: 107 SYHNIFRIGTMLQNLNFW--ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
               +  +  +   +      + ++VW+K     N            L++A    +A+  
Sbjct: 196 DDSEVAHLKLLCNEVFGQANFVAELVWKKGGTGKNDSQFAVVEHEYILVYARRYTEARFG 255

Query: 165 TFNYDALKAANEDVQMRSDWLI 186
              Y              D+ +
Sbjct: 256 LDQYRQTTTQYNHSDEHGDYSL 277



 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 70/200 (35%), Gaps = 29/200 (14%)

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
           + L+    +  N +  +   +     + L++ + +     YT NY         +     
Sbjct: 303 YRLSHRNPQAPNAIWRWSREKVAECMDQLVFHNGNV----YTKNYKKSGVKVRSLLAGET 358

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG--DIILDPFFGSGTSGAVA 241
           + +      E         +    KP  L+  ++  +T+P   DIILD F GSGT+    
Sbjct: 359 FGVTRTGKKEAEDALGVAGVFDFPKPARLIKFLVSIATEPHSHDIILDFFAGSGTTAHAV 418

Query: 242 KKL------RRSFIGIEMKQ--------------DYIDIATKRIASV-QPLGNIELTVLT 280
            +L       R  I +++ +                 +I+ +RI    + +   E++   
Sbjct: 419 MQLNAEDRGNRRSISVQLPEPTPAGSAAQEAGFQTIAEISRERIRRAGKKILENEVSKPD 478

Query: 281 GKRTEPRVAFNL--LVERGL 298
           G+     + F    LV+   
Sbjct: 479 GRADSLDIGFRAYKLVDTNF 498


>gi|319757916|gb|ADV69858.1| putative modification enzyme of type III restriction-modification
           system [Streptococcus suis JS14]
          Length = 429

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 20/107 (18%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIE 252
           DG+      KP  L+ +I+   ++   +ILD F GS T+     +L       R +I   
Sbjct: 190 DGKAYFTYPKPVPLMKQIVQLYSEKDGLILDFFAGSATTADAVMQLNAEDGGNRKYILCT 249

Query: 253 MKQDYID--------------IATKRIASVQPLGNIELTVLTGKRTE 285
           + +   D              I+ +RI         E     GK+  
Sbjct: 250 LDEQVADKSAAKEAGYETIDQISRERIRRAAKKIQEEHPETVGKQDF 296


>gi|289812099|ref|ZP_06542728.1| site-specific DNA-methyltransferase, component of type III
           restriction-modification system [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 152

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 59/152 (38%), Gaps = 18/152 (11%)

Query: 20  KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQL------NGQLYRPDHSLVDAVTD 70
           K+ +I+G+++ VL+ L       V LI+ DPPYN         N Q    ++  +   T+
Sbjct: 1   KNLMIEGDNLEVLKLLQKSYTGKVKLIYIDPPYNTGKDFVYPDNFQDNMKNYLEITGQTE 60

Query: 71  SWDKFSSFEA--------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL- 121
              + S+           +       +   R +L  +G +++    H +  + ++   + 
Sbjct: 61  EGVRVSTNAETSGRYHTDWLNMMYPRIKLARNLLSDSGFIFISIDEHEVHNLCSLCFEIF 120

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
                  ++   +NP      +    AHE ++
Sbjct: 121 GEENFIALIANTNNPKGRSDDKFIATAHEYIL 152


>gi|146318337|ref|YP_001198049.1| modification enzyme of type III restriction-modification system
           [Streptococcus suis 05ZYH33]
 gi|146320531|ref|YP_001200242.1| modification enzyme of type III restriction-modification system
           [Streptococcus suis 98HAH33]
 gi|145689143|gb|ABP89649.1| putative modification enzyme of type III restriction-modification
           system [Streptococcus suis 05ZYH33]
 gi|145691337|gb|ABP91842.1| putative modification enzyme of type III restriction-modification
           system [Streptococcus suis 98HAH33]
 gi|292558130|gb|ADE31131.1| putative modification enzyme of type III restriction-modification
           system [Streptococcus suis GZ1]
          Length = 429

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 20/107 (18%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIE 252
           DG+      KP  L+ +I+   ++   +ILD F GS T+     +L       R +I   
Sbjct: 190 DGKAYFTYPKPVPLMKQIVQLYSEKDGLILDFFAGSATTADAVMQLNAEDGGNRKYILCT 249

Query: 253 MKQDYID--------------IATKRIASVQPLGNIELTVLTGKRTE 285
           + +   D              I+ +RI         E     GK+  
Sbjct: 250 LDEQVADKSAAKEAGYETIDQISRERIRRAAKKIQEEHPETVGKQDF 296


>gi|315453957|ref|YP_004074227.1| DNA methylase N-4/N-6 domain-containing protein [Helicobacter felis
           ATCC 49179]
 gi|315133009|emb|CBY83637.1| DNA methylase N-4/N-6 domain protein [Helicobacter felis ATCC
           49179]
          Length = 69

 Score = 56.9 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 23/43 (53%)

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           ++LD F G G++G    ++   FIG+E   DY  IA + +   
Sbjct: 1   MVLDYFAGGGSTGVACAQMGLDFIGVEKSADYARIAQENLQKA 43


>gi|227876052|ref|ZP_03994171.1| site-specific DNA-methyltransferase (adenine-specific) [Mobiluncus
           mulieris ATCC 35243]
 gi|306819328|ref|ZP_07453037.1| type III restriction-modification system EcoP15I [Mobiluncus
           mulieris ATCC 35239]
 gi|307700074|ref|ZP_07637122.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
 gi|227843351|gb|EEJ53541.1| site-specific DNA-methyltransferase (adenine-specific) [Mobiluncus
           mulieris ATCC 35243]
 gi|304647906|gb|EFM45222.1| type III restriction-modification system EcoP15I [Mobiluncus
           mulieris ATCC 35239]
 gi|307614724|gb|EFN93945.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
          Length = 626

 Score = 56.9 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 81/235 (34%), Gaps = 27/235 (11%)

Query: 18  EWKDKIIKGNSISVLEKL---PAKSVDLIFADPPYNLQLNGQLYRPD-----HSLVDAVT 69
           E ++  I G+++  L  L    A  V  I+ DPPYN   +G +Y+ D       LVD + 
Sbjct: 93  ESENLYIVGDNLDALGHLVKSYAGMVKCIYIDPPYNTGSDGFVYQDDFGFTARQLVDKIG 152

Query: 70  DSWDK---------FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
            S D+          SS  A+  F    L   + +L  +G +++    +    +  +   
Sbjct: 153 ISEDEARRVLDMRGKSSHSAWLTFMYPRLALAKELLSDDGVIFISIDDNEQANLKLLCDE 212

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS-----PKAKGYTFNYDALKAAN 175
           +         +           ++    H+ L   + +     P  +        +    
Sbjct: 213 IFGEQNFVASFVIVRSEGGGLAKQAVIGHDYLPTYAKNIDKFIPLGRPKDIRGKIINKDG 272

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
            D  + +DWL            ++  +    +K      R + +  + GD +L P
Sbjct: 273 VDYWIETDWLRKEFGKYGTCYYEEIVRYLGVEK-----KREIDAGIESGDYVLVP 322



 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 12/117 (10%)

Query: 201 EKLHPTQKPEALLSRILVSST----KPGDIILDPFFGSGTSGAVAKKL------RRSFIG 250
           +      KP  L+  ++   T       DI+LD F GS T+     +L       R +I 
Sbjct: 372 DSFFSFPKPVELVKSVVQGCTILSKNDSDIVLDFFSGSSTTADAVMQLNAEDGGNRRYIM 431

Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGL-IQPGQILT 306
           +++  + I+    R +              G+    R A  + VE G+ I  G  L 
Sbjct: 432 VQL-PEIINPKDNRHSKAAYQAGYRTIDEIGRERIKRAAAKIKVETGVNIDYGFKLF 487


>gi|114567068|ref|YP_754222.1| adenine-specific DNA-methyltransferase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|114338003|gb|ABI68851.1| site-specific DNA-methyltransferase (adenine-specific)
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 611

 Score = 56.9 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 60/198 (30%), Gaps = 32/198 (16%)

Query: 103 WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM--PNFRGRRFQNAHETL-IWASPSP 159
           +     +  +R   +         +  +   +  +     +GR +     T+  W     
Sbjct: 259 YDSNDGYGPWRPDNLSVKTYSKEYDFTIINPTTGVEYNPPKGRCWVTNKNTIDKWIKEGR 318

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL---------HPTQKPE 210
              G T N         +   +    I   S  E   N +  K            T KP 
Sbjct: 319 VFFGQTGNGAPQLKRYLNEVQQGVVPITYWSYDECGHNDEARKEIKQLFSEPPFDTPKPT 378

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGI-------EMKQDY 257
            L+ +IL  ST    I+LD F GS T+     KL       R F+ +       E  + Y
Sbjct: 379 RLIKQILNISTNKDSIVLDFFSGSSTTAHAVMKLNSQDDGNRKFVMVQLPEPCNEDSEAY 438

Query: 258 -------IDIATKRIASV 268
                   +I  +RI   
Sbjct: 439 KAGFPNICEIGKERIRRA 456



 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 50/134 (37%), Gaps = 15/134 (11%)

Query: 3   QKNSLAINENQNSIFEW---KDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQ 56
           Q+++  +  ++ S  +W   K+  I+G+++ VL  L       V +I+ DPPYN   +  
Sbjct: 68  QQSTGTLRPDKESSKDWDTTKNLYIEGDNLEVLRLLQKAYHRKVKMIYIDPPYNTGNDFI 127

Query: 57  LYRPDHSLVDAVTDSWDKFSS---------FEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
                   V +  +  ++               +       L   + +L  +G +++   
Sbjct: 128 YKDDYKDNVKSYKEKTEQSMKANPATAGRYHSEWLNMMYPRLRLAKNLLSDDGAIFISID 187

Query: 108 YHNIFRIGTMLQNL 121
              +  +  +   +
Sbjct: 188 DTELDNLKKICNEV 201


>gi|237751006|ref|ZP_04581486.1| type II DNA modification enzyme [Helicobacter bilis ATCC 43879]
 gi|229373451|gb|EEO23842.1| type II DNA modification enzyme [Helicobacter bilis ATCC 43879]
          Length = 142

 Score = 56.9 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 5/132 (3%)

Query: 173 AANEDVQMRSDWLIPICSGSE----RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
             +++   R    I  C G +              +PT+K  A+L RI+  S+     ++
Sbjct: 8   EWSKNNNPRKKVYIDECKGKKIQDIWEFKDSQNPAYPTEKNRAILRRIIAMSSNTESKVM 67

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
           D F G G     A  L R  IGI+   + I +  + I   +         L GK    R+
Sbjct: 68  DCFCGGGGFLQEALNLGRKIIGIDESIEAIKLNQQWIKESENHLFSRNIALIGKCVSNRI 127

Query: 289 AFNLLVERGLIQ 300
             N + E   ++
Sbjct: 128 -INEVKENNHME 138


>gi|219856208|ref|YP_002473330.1| hypothetical protein CKR_2865 [Clostridium kluyveri NBRC 12016]
 gi|219569932|dbj|BAH07916.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 659

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 71/198 (35%), Gaps = 23/198 (11%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLY 58
             +   +  EN NS   +    I G+++  L+ L    +  V  I+ DPPYN   +G +Y
Sbjct: 83  PDEEHNSKPENMNSENIY----ISGDNLDGLKHLLKSYSGQVKCIYIDPPYNTGTDGFVY 138

Query: 59  RPDHS-----LVDAVTDSWDK-----------FSSFEAYDAFTRAWLLACRRVLKPNGTL 102
               +     L + ++ S ++            +S  A+  F  + LL  R +L  +G +
Sbjct: 139 NDQFNFTVEELSEKLSISEEQAQRILDLTKRGSASHSAWLMFMYSRLLLARDLLTDDGVI 198

Query: 103 WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
           ++    +    +  +  ++         + +               H+ ++  S +    
Sbjct: 199 FISIDDNECHNLKLLCDDVFGEENFIAEFPRITKRGGKSSEIIAKNHDYVLMYSKTNAPL 258

Query: 163 GYTFNYDALKAANEDVQM 180
            +   ++     ++D   
Sbjct: 259 LFPIAHNDSAFKHKDEFF 276



 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 38/101 (37%), Gaps = 20/101 (19%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGI-- 251
           G+K+    KP AL++ +   ST+  DIILD F GS  +     KL       R +I +  
Sbjct: 413 GKKIFNHTKPLALMTLLAKLSTQDSDIILDFFSGSAATAEAIMKLNCDENTRRKYIMVQL 472

Query: 252 -----EMKQDY-------IDIATKRIASVQPLGNIELTVLT 280
                E    Y        DI   RI     L   E    T
Sbjct: 473 PEKCKETSSAYKNGYRTICDIGIDRIKKAATLLKEEYPDTT 513


>gi|312601382|gb|ADQ90637.1| Putative type III restriction-modification system: methylase
           [Mycoplasma hyopneumoniae 168]
          Length = 561

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 65/194 (33%), Gaps = 11/194 (5%)

Query: 53  LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
               +    +   D       K+   +  D  +  W       ++ NG ++  G     +
Sbjct: 261 YVQNINDGSYKFSDEYIQERGKYKLIQL-DRASLTWSEGLDYPIEYNGKIYYAGGSQEKW 319

Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF-NYDAL 171
           +     ++     + D  WR +    ++  +        +++ +    +K Y F + +  
Sbjct: 320 QA----RHQGNRAVKDWQWRWARKKLDWGIKNG-----FIVFKNEKVFSKQYQFVDNNNQ 370

Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
           K            L     G++  +N    K+    KP  L+  ++         ILD F
Sbjct: 371 KIERVSKFSNLILLAQGTEGTQEQKNIFSTKVFDHPKPIELIKYLINIHPNKNAKILDFF 430

Query: 232 FGSGTSGAVAKKLR 245
            GSGT+G    +L 
Sbjct: 431 AGSGTTGHAVLELN 444



 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 52/140 (37%), Gaps = 21/140 (15%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP----------------AKSVDLIF 44
           + +  +L+   N+N+  + ++ +I G +   L+ L                 A   D+I+
Sbjct: 76  LEKDENLSFKSNENN--QNQNTLIIGENYDALKNLLVLERERERERERERETAAGYDVIY 133

Query: 45  ADPPYNLQ---LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
            DPPYN Q     G     D   +      +    S   +       L   +++LK +G 
Sbjct: 134 IDPPYNTQASFNEGNQVANDKENILPSKFIYRDKYSRNGWLNLLNERLNLAKKLLKDDGI 193

Query: 102 LWVIGSYHNIFRIGTMLQNL 121
           ++V    +    +  ++  +
Sbjct: 194 IFVSIDDNQQAYLKVLMDEI 213


>gi|167579290|ref|ZP_02372164.1| type III DNA modification methyltransferase [Burkholderia
           thailandensis TXDOH]
          Length = 594

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 53/153 (34%), Gaps = 21/153 (13%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRP---------------- 60
           ++ +I+G ++ VL+ L    A    L++ DPPYN   +                      
Sbjct: 101 RNLMIEGENLEVLKLLQKSYAGRAKLVYIDPPYNTGKDFVYSDNFTDSLRHYLELTGQTT 160

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
               + + TD+  +F +   +       L   R +L  +G + V    H    +  +++ 
Sbjct: 161 GGKRISSHTDASGRFHT--DWLNMIYPRLKLARDLLADDGVIAVHIDEHEQHALVLVMRE 218

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           +        V       P    R     HE+++
Sbjct: 219 IFGEDNELGVAVWDKRNPKGDARGIAYQHESIV 251



 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 53/171 (30%), Gaps = 11/171 (6%)

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF-RGRRFQNA 148
            A    +  +G ++ + S            +   + +  +      P P   RG R   A
Sbjct: 311 EAMYDRISADGRVYRLVS-MAWPNKKKAPDD---YFVPLVHPVTGKPCPVPERGWRNPPA 366

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
               +      +               ++    +   +    GS+    K         K
Sbjct: 367 TMQALIDKGLVEFGADETTQPQRIYFLDENMYENVPSVLPFGGSDDALMKSLGIPFDQPK 426

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEM 253
           P    + I+   T   D+I+D F GSGT+G     L       R ++ +++
Sbjct: 427 PVEFAASIIGWCTDGDDLIVDFFGGSGTTGHAVMALNAADGGNRRYVLVQL 477


>gi|153955848|ref|YP_001396613.1| Type III restriction-modification system, modification subunit
           [Clostridium kluyveri DSM 555]
 gi|146348706|gb|EDK35242.1| Type III restriction-modification system, modification subunit
           [Clostridium kluyveri DSM 555]
          Length = 656

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 71/198 (35%), Gaps = 23/198 (11%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLY 58
             +   +  EN NS   +    I G+++  L+ L    +  V  I+ DPPYN   +G +Y
Sbjct: 80  PDEEHNSKPENMNSENIY----ISGDNLDGLKHLLKSYSGQVKCIYIDPPYNTGTDGFVY 135

Query: 59  RPDHS-----LVDAVTDSWDK-----------FSSFEAYDAFTRAWLLACRRVLKPNGTL 102
               +     L + ++ S ++            +S  A+  F  + LL  R +L  +G +
Sbjct: 136 NDQFNFTVEELSEKLSISEEQAQRILDLTKRGSASHSAWLMFMYSRLLLARDLLTDDGVI 195

Query: 103 WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
           ++    +    +  +  ++         + +               H+ ++  S +    
Sbjct: 196 FISIDDNECHNLKLLCDDVFGEENFIAEFPRITKRGGKSSEIIAKNHDYVLMYSKTNAPL 255

Query: 163 GYTFNYDALKAANEDVQM 180
            +   ++     ++D   
Sbjct: 256 LFPIAHNDSAFKHKDEFF 273



 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 38/101 (37%), Gaps = 20/101 (19%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGI-- 251
           G+K+    KP AL++ +   ST+  DIILD F GS  +     KL       R +I +  
Sbjct: 410 GKKIFNHTKPLALMTLLAKLSTQDSDIILDFFSGSAATAEAIMKLNCDENTRRKYIMVQL 469

Query: 252 -----EMKQDY-------IDIATKRIASVQPLGNIELTVLT 280
                E    Y        DI   RI     L   E    T
Sbjct: 470 PEKCKETSSAYKNGYRTICDIGIDRIKKAATLLKEEYPDTT 510


>gi|194336230|ref|YP_002018024.1| Site-specific DNA-methyltransferase (adenine-specific) [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308707|gb|ACF43407.1| Site-specific DNA-methyltransferase (adenine-specific) [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 643

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 67/212 (31%), Gaps = 25/212 (11%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLN------------------GQLY 58
           K+ +I+G+++ VL+ L    +  V LI+ DPPYN   +                  GQ+ 
Sbjct: 101 KNLMIEGDNLEVLKLLQKSYSGKVKLIYIDPPYNTGKDFVYPDNFQDNIKNYLELTGQI- 159

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
                 + + T++  +F +   +       L   R +L+ +G +++      +  +  + 
Sbjct: 160 -EGGRKISSNTEASGRFHT--DWLNMMYPRLKLARNLLREDGVIFISIDDGELDNLRKLC 216

Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
             +       +             +     H+ ++  + +  +        +        
Sbjct: 217 AEVFGDENFVVQIIWRKRSTPPNDKIIGANHDYILCFAKNAISVKLQHRERSADQIARYK 276

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
              +    P   G      K G  +     P 
Sbjct: 277 NPDNHAKGPWAPGDLMANIKGGRFVKSLNFPI 308



 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 50/111 (45%), Gaps = 10/111 (9%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV--AKKL----RRSFIGIEM-KQ 255
           +  + KP  L+  ++    +P  ++LD F GSGT+G    A+ +     R +I +++ +Q
Sbjct: 392 IFESPKPVGLIQELVALGCEPNGVVLDFFAGSGTTGHALMAQNVIDGGNRRYILVQLPEQ 451

Query: 256 DYIDIATKRIAS--VQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQI 304
            Y++   +R++      +G     V   K    R A   + +   + PG  
Sbjct: 452 LYLENNEQRVSGDYCDQIGKPRTIVELTKERLRRAA-RKIKDENPLFPGDF 501


>gi|188997625|ref|YP_001931876.1| DNA methylase N-4/N-6 domain protein [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932692|gb|ACD67322.1| DNA methylase N-4/N-6 domain protein [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 524

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 11/99 (11%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSST---- 221
           YD     N+  +   +W +     SE  R K   ++HP +      L+   L S T    
Sbjct: 59  YDKTYKINQQKEENINWSLSFAEYSEAERTKHVHRIHPYKGKFIPQLVEYFLDSHTDSFK 118

Query: 222 -----KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                K GDI+LDPF GSGT+   A +L    +G+++ Q
Sbjct: 119 KEVYFKAGDIVLDPFCGSGTTLVQANELGIHAVGVDISQ 157


>gi|218960644|ref|YP_001740419.1| Modification methylase MjaII (N-4 cytosine-specific
           methyltransferase MjaII) (M.MjaII) [Candidatus
           Cloacamonas acidaminovorans]
 gi|167729301|emb|CAO80212.1| Modification methylase MjaII (N-4 cytosine-specific
           methyltransferase MjaII) (M.MjaII) [Candidatus
           Cloacamonas acidaminovorans]
          Length = 529

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 13/104 (12%)

Query: 164 YTFNYDALKAANEDVQMRSD--WLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVS 219
           Y  N    K      Q+  D  W++     +E    K   +LHP +      L+   L +
Sbjct: 59  YYHNISHNKKEEWTQQLGEDLNWVLAFDKYTEAETTKHVHRLHPYKGKFIPQLVEYFLDT 118

Query: 220 STK---------PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            T          PGDI+LDPF GSGT+   A +L  + IGI++ 
Sbjct: 119 HTDNFKQEVFFHPGDIVLDPFVGSGTTLVQANELGINAIGIDVS 162


>gi|207094033|ref|ZP_03241820.1| putative type III restriction enzyme M protein [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 37

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
            +ST   D++LD F  SGT+ AVA K++R +IGIE
Sbjct: 3   KNSTNENDLVLDFFARSGTTCAVAHKMKRHYIGIE 37


>gi|308271076|emb|CBX27686.1| hypothetical protein N47_H25080 [uncultured Desulfobacterium sp.]
          Length = 1037

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 66/215 (30%), Gaps = 25/215 (11%)

Query: 23  IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +I G++   L  L       V++++ DPPYN   N  LY+  +                 
Sbjct: 467 LIHGDNFQALNLLQERYRGQVNIVYIDPPYNTSENSFLYKNQYK--------------HS 512

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMP 138
           ++     + +      +  N  L        +  +   L  +  F      +  +  P  
Sbjct: 513 SWLTMVESRVRMAVDAMSDNAVLCSAIDDFELPYLENALDQVFGFENRLGNLAIEIKPSG 572

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
                    +HE +++      AK Y           E+            S   R   +
Sbjct: 573 RTNDNYLATSHEYILF-----YAKDYAKAKIDFFPLTEEQVAEYSEGDGGESYKWRDFLR 627

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
            G    P ++P +     +  + + G+  + PF G
Sbjct: 628 TGGFSTPEERPNS--YYFIYYNPETGEAGVKPFEG 660



 Score = 43.8 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYIDIATKRIASV 268
            +  S+     ++D F GSGT+G     L       R +I +E  + +  +   RI  V
Sbjct: 759 FVNISSDHSATVMDHFSGSGTTGHATINLNRQDNGHRKYILVEQGEYFDTVLKPRIQKV 817


>gi|260892720|ref|YP_003238817.1| DNA methylase N-4/N-6 domain protein [Ammonifex degensii KC4]
 gi|260864861|gb|ACX51967.1| DNA methylase N-4/N-6 domain protein [Ammonifex degensii KC4]
          Length = 1050

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 47/141 (33%), Gaps = 15/141 (10%)

Query: 143 RRFQNAHETL--------IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           RR++ + E L        +    +     Y  +Y            + ++          
Sbjct: 689 RRWKWSVERLQANKDKVKVGVDRNGNLALYVKSYKPEGRTPPTWWEKKEYSATDWGTRTL 748

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSST-KPGDIILDPFFGSGTSGAVAKKLR------RS 247
                  K     K   L+   L   +    DI+LD F GSGT+     +L       R 
Sbjct: 749 SNLFGVSKPFDYPKAVELVKDCLRVGSVAASDIVLDFFAGSGTTAHAVIELNREDSGQRK 808

Query: 248 FIGIEMKQDYIDIATKRIASV 268
           FI +E+ + +  +   R+A V
Sbjct: 809 FILVEIGEYFDTVLLPRVAKV 829



 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 52/138 (37%), Gaps = 18/138 (13%)

Query: 23  IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           ++ G +   L  L     + V  ++ DPPYN   +  +Y+ ++                 
Sbjct: 470 LVHGENYQALRLLEGRYQEQVKCVYIDPPYNSPSSEIIYKNNYK--------------HS 515

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            +       L A + +L+  GT+ +    H +  +  ++  +    +  +V R SNP   
Sbjct: 516 TWATLMFERLRASKALLQKGGTIAIAIDDHEVVTLKALMPLVFPGEIETVVVR-SNPAGR 574

Query: 140 FRGRRFQNAHETLIWASP 157
              + F   HE +++   
Sbjct: 575 STPKGFSVQHEYVVFGWK 592


>gi|206889492|ref|YP_002248294.1| modification methylase MjaII [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206741430|gb|ACI20487.1| modification methylase MjaII [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 538

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 11/104 (10%)

Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVS 219
           K Y  ++         +    +W +      E  R K   +LHP +      L+   L S
Sbjct: 67  KDYYDSFRNELYQKSSIFKDINWHLSFSEYKESERTKHVHRLHPYKGKFIPQLVEYFLDS 126

Query: 220 STKP---------GDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            T            DI+LDPF GSGT+   A +L    +GI++ 
Sbjct: 127 HTDEFKKEVYFKKDDIVLDPFCGSGTTLVQANELGIHAVGIDVS 170


>gi|254298624|ref|ZP_04966075.1| type III DNA modification methyltransferase [Burkholderia
           pseudomallei 406e]
 gi|157808512|gb|EDO85682.1| type III DNA modification methyltransferase [Burkholderia
           pseudomallei 406e]
          Length = 677

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 53/153 (34%), Gaps = 21/153 (13%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNG----------------QLYRP 60
           ++ +I+G ++ VL+ L    A  V L++ DPPYN   +                      
Sbjct: 107 RNLMIEGENLEVLKLLQKSYAGRVKLVYIDPPYNTGKDFVYPDNFTDSLRHYLELTGQTT 166

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
               V +  D+  +F +   +       L   R +L  +G + V    H    +  +++ 
Sbjct: 167 GGKRVTSHADASGRFHT--DWLNMIYPRLKLARDLLTEDGVIAVHIDEHEQHALVLVMRE 224

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           +        V       P    R     HE+++
Sbjct: 225 IFGEDNELGVAVWDKRNPKGDARGIAYQHESIV 257



 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 52/171 (30%), Gaps = 11/171 (6%)

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF-RGRRFQNA 148
            A    +  +G ++ + S            +   + +  +      P P   RG R   A
Sbjct: 317 EAMYDRISADGRVYRLVS-MAWPNKKKAPDD---YFVPLVHPVTGKPCPVPERGWRNPPA 372

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
               +      +               ++    +   +    GS+    K         K
Sbjct: 373 TMRALIDKGLVEFGADETTQPQRIYFLDENMYENVPSVLPFGGSDDALMKSLGIPFDQPK 432

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
           P    + I+   T   D+I+D F GSGT+      L       R ++ +++
Sbjct: 433 PVEFAASIIGWCTDGDDLIVDFFGGSGTTAHAVMALNAADGGHRRYVLVQL 483


>gi|187929432|ref|YP_001899919.1| DNA methylase N-4/N-6 domain-containing protein [Ralstonia
           pickettii 12J]
 gi|187726322|gb|ACD27487.1| DNA methylase N-4/N-6 domain protein [Ralstonia pickettii 12J]
          Length = 854

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 37/121 (30%), Gaps = 1/121 (0%)

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL-IPICSGSERLRN 197
            FR     N ++            G+               M   W  +        +++
Sbjct: 705 WFRDYHLANVYDYQHHVRIGETIDGFGRLPVTFMLLQPPSWMDDVWTDVARMRTLNMIQS 764

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           + G++ H       +  R++   T PGD + DPF G  +    A       +  E+   Y
Sbjct: 765 QKGKEQHLCPMQFDIADRVIERFTNPGDTVYDPFGGIMSVPYRALLKGHKAVACELSTRY 824

Query: 258 I 258
            
Sbjct: 825 F 825



 Score = 37.3 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 18/54 (33%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           +++  + +     +P    DLI    P++ Q        D    D     + + 
Sbjct: 493 RVVNNDCVEETANMPDNCHDLILTSIPFSTQYEYSPNYADFGHTDNNEHFFQQM 546


>gi|329943977|ref|ZP_08292246.1| conserved domain protein [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328531410|gb|EGF58252.1| conserved domain protein [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 99

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/38 (52%), Positives = 26/38 (68%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
           HPT KP  L++RIL +S  PGD++LD F GSG+    A
Sbjct: 33  HPTMKPVELITRILTNSFPPGDLVLDLFGGSGSPLIAA 70


>gi|327478904|gb|AEA82214.1| type III restriction-modification system methyltransferase
           [Pseudomonas stutzeri DSM 4166]
          Length = 406

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 61/166 (36%), Gaps = 24/166 (14%)

Query: 17  FEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQL---------------- 57
            E K+  I G+++  L+ +       V LI+ DPPYN   +                   
Sbjct: 96  EETKNIFIDGDNLDALKLIQETYLGKVKLIYIDPPYNTGSDFVYADDFAQGADEYLERSL 155

Query: 58  -YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
               D S +   T +  +F S  A+ +   A L   R VL  +G +++         +  
Sbjct: 156 QRSSDGSRLTTNTSTSGRFHS--AWMSMMLARLRLARNVLSDDGVIFISIDDGEQANLKK 213

Query: 117 MLQNLNFW--ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
           +   +      + D +WR  +   N   R   + + TLI++  S  
Sbjct: 214 ICDEVFGEGNFIADAIWRSKDNSNNDAKRFSTDHNHTLIYSKSSGW 259


>gi|217031872|ref|ZP_03437375.1| hypothetical protein HPB128_199g80 [Helicobacter pylori B128]
 gi|216946524|gb|EEC25126.1| hypothetical protein HPB128_199g80 [Helicobacter pylori B128]
          Length = 78

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 30/56 (53%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +G++ +     +K+    KP  L+SR++  ST   DIILD F GSGT+     +  
Sbjct: 9   NGTKEVNALFNQKIFNNPKPTKLISRLIELSTNESDIILDFFAGSGTTAHAVLESN 64


>gi|84489281|ref|YP_447513.1| hypothetical protein Msp_0470 [Methanosphaera stadtmanae DSM 3091]
 gi|84372600|gb|ABC56870.1| partially conserved hypothetical protein [Methanosphaera stadtmanae
           DSM 3091]
          Length = 393

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 74/208 (35%), Gaps = 22/208 (10%)

Query: 24  IKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRP----DHSLVDAVTDSWDKFS 76
           I+G+++ VL+ L       + +++ DPPYN   +  +Y+     + +      +   KF 
Sbjct: 94  IEGDNLEVLKLLQKSYQSKIKMMYIDPPYNTGNDSFIYKDNFQENETEYIEKEEERGKFQ 153

Query: 77  S--------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILN 127
           S           +       L   R +L   G L +    +    +  M + +     ++
Sbjct: 154 SNPNSSGRYHTNWMNMIYPLLRLARNLLSEEGVLLISIDDNEFSNLIVMCKEIFGEENID 213

Query: 128 DIVWR--KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
           +++W+   ++        R +  HE ++    +     +    +     NE     +D  
Sbjct: 214 NLIWQKVDNDSGKMKITYRVRLEHEYVLICYKNKNKTYFNKFIEERNYKNEYDNPDNDPR 273

Query: 186 IP----ICSGSERLRNKDGEKLHPTQKP 209
            P    I S +E   NKD    +    P
Sbjct: 274 GPYKQAIISSTEEKSNKDSPNYYSITTP 301


>gi|73661338|ref|YP_300119.1| modification methylase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72493853|dbj|BAE17174.1| putative modification methylase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 347

 Score = 56.9 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 29/50 (58%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
            +  E++ +  +   ++  + ILDPF GSGT+   + KL R+ IGI++  
Sbjct: 9   AKFHESIPNEYINKYSQEFETILDPFCGSGTTLKESLKLGRNAIGIDVSP 58


>gi|298736794|ref|YP_003729324.1| adenine-specific DNA-methyltransferase [Helicobacter pylori B8]
 gi|298355988|emb|CBI66860.1| site-specific DNA-methyltransferase (adenine-specific)
           [Helicobacter pylori B8]
          Length = 384

 Score = 56.9 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 52/134 (38%), Gaps = 17/134 (12%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
             ++  L+++  +S+  I+ DPPYN + +   Y  DH+                 Y+ + 
Sbjct: 1   MEALECLKRIEKESIQTIYIDPPYNTKSSNFEYEDDHA----------------DYEKWI 44

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
           +  L+  + VLK +G +++    + +  +  +   +     N +    +        +  
Sbjct: 45  KEHLILAKAVLKQSGCIFISIDDNKMAEVKIIANEIFGT-HNFLGTFITKQATRSNAKHI 103

Query: 146 QNAHETLIWASPSP 159
              HE ++  + + 
Sbjct: 104 NITHEYVLSYAKNK 117



 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 11/107 (10%)

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           L + +         +    LK + ++     D+      G++ L     + L  T KP A
Sbjct: 229 LYYQNRLIFKNNRPYEKYYLKESQDNCLSVLDFY--SRQGTKDLEKLGLKGLFKTPKPVA 286

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           L+  +L+ ST    IILD F GSGT+             IE+ +DY 
Sbjct: 287 LIKYLLLCSTPKDSIILDFFAGSGTTAQAV---------IEVNKDYC 324


>gi|238898007|ref|YP_002923687.1| methylation of 50S ribosomal subunit protein L11 [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|259534540|sp|C4K4P6|PRMA_HAMD5 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|229465765|gb|ACQ67539.1| methylation of 50S ribosomal subunit protein L11 [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 305

 Score = 56.9 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 60/167 (35%), Gaps = 12/167 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  ++  ++         S   +P  S    + +     G   HPT    AL    
Sbjct: 102 WEREWMIHFHPMRFGQRLWVCPSMQAVPDPSAVNVILDPGLAFGTGTHPTT---ALCLEW 158

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S      I++D   GSG     A KL  +  IGI++    I+ +     + Q  G  E
Sbjct: 159 LDSLDLQNKILIDFGCGSGILAIAALKLGAKQAIGIDIDPQAIEASRD---NAQRNGVSE 215

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
             VL     EP+     +V   ++     L    G I+  V  DG L
Sbjct: 216 HLVLYLSGQEPKNLQADVVVANILAA--PLCELAGVIADLVKPDGYL 260


>gi|26553930|ref|NP_757864.1| ATP/GTP-binding protein [Mycoplasma penetrans HF-2]
 gi|26453938|dbj|BAC44268.1| hypothetical ATP/GTP-binding protein [Mycoplasma penetrans HF-2]
          Length = 407

 Score = 56.9 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 45/148 (30%), Gaps = 15/148 (10%)

Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
           + +       I     N +       F  A E +    P     GY+  Y   K   +  
Sbjct: 151 KEIIDKGFVPIRPPIKNGVLLRWSWSFDKAIERIEKIIPKMTKNGYSLFYADEKEYKQVS 210

Query: 179 QMRSDWLIPICSGSERLRNKDGEKL-------HPTQKPEALLSRILVSSTKPGDIILDPF 231
                      S  + + +  G           P  KP  L+  ++   +    IILD F
Sbjct: 211 HKSIVRFNINQSIIDNISSSKGSNTLRKLGIEFPNPKPVELIKFLINKHSNENAIILDFF 270

Query: 232 FGSGTSGAVAKKL--------RRSFIGI 251
            GSGT+G    +L         R FI  
Sbjct: 271 AGSGTTGHAVMELNSDPKTKGNRKFILC 298


>gi|295426562|ref|ZP_06819211.1| type III restriction-modification system methyltransferase
           [Lactobacillus amylolyticus DSM 11664]
 gi|295063741|gb|EFG54700.1| type III restriction-modification system methyltransferase
           [Lactobacillus amylolyticus DSM 11664]
          Length = 633

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/160 (12%), Positives = 51/160 (31%), Gaps = 18/160 (11%)

Query: 17  FEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
              K+  I+G+++  L+ +     + V +I+ DPPYN   +       H       ++  
Sbjct: 92  ENTKNVYIEGDNLEALKLMQKAYGEKVKIIYIDPPYNTGHDFVYKDNYHDSYQNYLETTG 151

Query: 74  KFSS---------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
           +                     +       L   R +L  +G +++    +   R+  M 
Sbjct: 152 QLDDEGNITTTNKESNGRYHTDWLNMMYPRLKLARNLLTKDGVIFISIDDNEHDRLKIMC 211

Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
             +         +   +   +  G   +   E ++  + +
Sbjct: 212 DEIFGESNFQADFIWKSTAGSNTGSAIKTVTEYIVCYAKN 251



 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 6/64 (9%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIE 252
           + +K+    KP  LL  ++    +    ILD F GSG++     +        R FI ++
Sbjct: 395 NNDKVFDYPKPINLLKHLIKIIAEKDITILDFFSGSGSTAQAVMEQNAEDGGHRKFIMVQ 454

Query: 253 MKQD 256
           + + 
Sbjct: 455 LPEK 458


>gi|169334193|ref|ZP_02861386.1| hypothetical protein ANASTE_00591 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258910|gb|EDS72876.1| hypothetical protein ANASTE_00591 [Anaerofustis stercorihominis DSM
           17244]
          Length = 685

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 60/167 (35%), Gaps = 19/167 (11%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDH----- 62
            N+    + ++  I G+++  L+ L    A  V  I+ DPPYN   +G +Y  +      
Sbjct: 85  NNKPENKDSQNIYISGDNLDGLKHLLKSYAHQVKCIYIDPPYNTGSDGFVYNDNFNFSAE 144

Query: 63  --SLVDAVTDSWDKF---------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
             S   ++ +   +          +S  A+  F  + LL  R +L  +G +++    +  
Sbjct: 145 ELSTKLSIDEEQAQRILDLTKSGSASHSAWLMFMYSRLLLARDLLTDDGVIFISIDDNEQ 204

Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
             +  +  ++                     ++    HE L   + +
Sbjct: 205 SNLKLICDDVFGEENFVANIIVQANKRGQTYKQLAKTHEYLFVYTKN 251



 Score = 38.0 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 31/82 (37%)

Query: 164 YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKP 223
           +  +      + ED  +  +  +    GS+ L   +        KP  L+ ++    +  
Sbjct: 386 WYEDDLVGDLSGEDDDIWEETNVITEQGSKELTAYEMGDAFDFPKPTYLIKKVFHIGSND 445

Query: 224 GDIILDPFFGSGTSGAVAKKLR 245
           GDI LD F GS +S      L 
Sbjct: 446 GDICLDFFSGSASSFEALLSLN 467


>gi|167751319|ref|ZP_02423446.1| hypothetical protein EUBSIR_02305 [Eubacterium siraeum DSM 15702]
 gi|167655826|gb|EDR99955.1| hypothetical protein EUBSIR_02305 [Eubacterium siraeum DSM 15702]
          Length = 249

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 9/94 (9%)

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
            +  N +++M + W  P          K      P      +   I++  ++ GD++LD 
Sbjct: 9   WEPENFELEMTTHWSFPKRGDWATHDAKWRGNWSPY-----IPRNIILRYSQEGDLVLDQ 63

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           F G GT+   AK L R  IGI++     D+A +R
Sbjct: 64  FAGGGTTLVEAKLLNRDIIGIDIN----DVALER 93



 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 30/158 (18%)

Query: 12  NQNSIFEW---KDKII--KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           ++ + F++   K K+   KG++   L+ +P  S+DLI   PPY             + + 
Sbjct: 95  SEKTAFDYEPAKGKVYINKGDAR-CLDSIPDDSIDLICTHPPY-------------ADII 140

Query: 67  AVTDSWDKFSS---FEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNI-------FRIG 115
             +D  D   S    + +    +       RVLK       ++G            F + 
Sbjct: 141 KYSDGIDGDLSQLKVKDFLEQMKPVAEESYRVLKKGKFCAILMGDTRQKGCMIPMSFDVM 200

Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
            + Q+  F +   I+  + N       +     +  L+
Sbjct: 201 KIFQDAGFTLKELIIKEQHNCRATGYWKTNSVKYNFLL 238


>gi|190895421|ref|YP_001985713.1| hypothetical protein RHECIAT_PA0000104 [Rhizobium etli CIAT 652]
 gi|190699366|gb|ACE93450.1| hypothetical protein RHECIAT_PA0000104 [Rhizobium etli CIAT 652]
          Length = 419

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +P      L   ++   +  GD I DPF G G++ A A    R  I  ++  
Sbjct: 31  YPGSFAPGLPGVLVDLLSSEGDTIFDPFCGIGSTAAAAILRGRHSISCDINP 82


>gi|194337258|ref|YP_002019052.1| DNA methylase N-4/N-6 domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309735|gb|ACF44435.1| DNA methylase N-4/N-6 domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 571

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 68/197 (34%), Gaps = 20/197 (10%)

Query: 17  FEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQL---YRPDHSLVDAVTD 70
            + K+ +++G+++  L+ L       V  I+ DPPYN  ++ +     R      D V++
Sbjct: 35  PDSKNLLVQGDNLVALKALLPYYAGQVKCIYIDPPYNTGVDERDESGKRTGWVYDDNVSN 94

Query: 71  ----SW---------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
                W         +  S  + +       L+     LK +G ++          +  +
Sbjct: 95  PEIKDWLHKVVGAEAEDLSRHDKWLCMMYPRLMMLHEFLKEDGVIFASIDETEYANLRLL 154

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
              + F + N +     +   +         HE ++  + +       +    L    + 
Sbjct: 155 FDEI-FGLGNRVGTIIWDNATDNNPTNIAMEHEYILCYAKNKSQLPSVWKSPNLAVKTKL 213

Query: 178 VQMRSDWLIPICSGSER 194
           +Q+  D++       ER
Sbjct: 214 LQIGDDFVEQYPDQKER 230



 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 72/222 (32%), Gaps = 29/222 (13%)

Query: 66  DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM-----LQN 120
           D V    D+    EAY  + R               LW    Y  I   G       + N
Sbjct: 219 DFVEQYPDQKERQEAYTKWFRE----------NKDYLWPFDRYKFIDGDGIYTGSQSVHN 268

Query: 121 LNFWILNDIVWRKSNPMPN---FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
                    +   +  +P      G RF       + +               LK   +D
Sbjct: 269 PGKEGYRYDIIHPTTELPCKQPMMGYRFPQETYYRLLSEKRVIFGNDETKLIELKVYVKD 328

Query: 178 VQMRSDWLIP----ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
            + +   L      + +   +      ++     KP  LL  +   +T   D+ILD F G
Sbjct: 329 YRAKLSSLFTLDGRVGTNEIKDILHYDKRPFDFPKPTTLLEELFSFTTSGDDLILDSFAG 388

Query: 234 SGTSGAVAKKL------RRSFIGIEMKQD-YIDIATKRIASV 268
           SGTSG    KL       R FI IEMK+    DI  +RI  V
Sbjct: 389 SGTSGHAVLKLNKSDGQNRRFILIEMKEKIARDITAERIRRV 430


>gi|319936303|ref|ZP_08010720.1| modification methylase [Coprobacillus sp. 29_1]
 gi|319808629|gb|EFW05177.1| modification methylase [Coprobacillus sp. 29_1]
          Length = 489

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 56/150 (37%), Gaps = 7/150 (4%)

Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
           RI  + +     I   +   K+  +P    + +   H+ +       K     +N     
Sbjct: 19  RIAVLCEE--NRIKGALKKGKTWLIPKNVDKPYDERHKRITGTIEDYKKIESRYNVIYPD 76

Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
           + N       ++   +    +R      ++ +  +  E L++       K   +ILDPF 
Sbjct: 77  SPNATYTSLLNYSDDLNKPFQRWYR--YKEGYSVELVEQLIN---EYCCKKKGVILDPFS 131

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           GSG++   AK++  S +G E+      +A 
Sbjct: 132 GSGSTLLAAKEMGYSSVGFEVNPFSFFLAQ 161



 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY 49
           + Q  ++ I+  +N  FE  + +I  + +++ + L   SVD I   PPY
Sbjct: 276 LEQYQNIYIDLLKNKDFENIN-LINDSCMNMNKYLKNNSVDGIIFSPPY 323


>gi|224437468|ref|ZP_03658430.1| hypothetical protein HcinC1_05825 [Helicobacter cinaedi CCUG
          18818]
          Length = 73

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 18/83 (21%)

Query: 13 QNSIFEWKDK-IIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
           N+ F +K+  +     +   +  L   S+DLI   PPYN+ +                +
Sbjct: 6  HNTSFSYKNTTLFNHTCLD--KTILQENSLDLIITSPPYNVGIEY--------------N 49

Query: 71 SWDKFSSFEAYDAFTRAWLLACR 93
          S +  +S+E+Y  F++ W+  C 
Sbjct: 50 SNEDSNSYESYLEFSQKWIGNCY 72


>gi|125973039|ref|YP_001036949.1| DNA methylase N-4/N-6 [Clostridium thermocellum ATCC 27405]
 gi|125713264|gb|ABN51756.1| DNA methylase N-4/N-6 [Clostridium thermocellum ATCC 27405]
          Length = 610

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 65/199 (32%), Gaps = 39/199 (19%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPD-------HSLVDAVTDSWD 73
           I+G+++ VL+ L       + +I+ DPPYN   +  +YR D       +  +    D   
Sbjct: 94  IEGDNLEVLKLLQKSYYGKIKMIYIDPPYNTGKD-FVYRDDFHDSLENYKRITGQVDGNG 152

Query: 74  KFSSFE---------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
           K  S            +       L   R +L  +G +++    + +  +          
Sbjct: 153 KAISTNTETSGRYHTDWLNMMYPRLRLARNLLSDDGVIFISIDDNEVDNLK--------K 204

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNA---------HETLIWASPSPKA--KGYTFNYDALKA 173
           I N+I    +      R RR   A         HE ++  +          T + D    
Sbjct: 205 ICNEIFGEDNFIANCVRKRRDSQANLSQNISPIHEYVLIYAKRFGNILNKVTPSLDMGSY 264

Query: 174 ANEDVQMRSDWLIPICSGS 192
            N D   R  +    C+  
Sbjct: 265 KNPDNDPRGPYTTMPCTNV 283



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 48/162 (29%), Gaps = 21/162 (12%)

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           +++         Y        A         D +     G+  ++   G  L    KP  
Sbjct: 318 IVFPRNGEGKPRYKIFLSEKMAEGVLANTWLDKIASNQEGTREIKELFGGLLFNNPKPTG 377

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGI-------EMKQDYI 258
           LL  +L   +    IILD F GS T+     +L       R FI +       E  + Y 
Sbjct: 378 LLKFLLELGSSKDSIILDFFSGSATTAHAVMQLNAEDGGNRRFIMVQLPEPTDENSEAYK 437

Query: 259 -------DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
                  +I  +RI         E     G      + F + 
Sbjct: 438 AGYMNISEIGKERIRRAGEKIKEEYKD-KGNIENLDIGFKVF 478


>gi|119383095|ref|YP_914151.1| DNA methylase N-4/N-6 domain-containing protein [Paracoccus
           denitrificans PD1222]
 gi|119372862|gb|ABL68455.1| DNA methylase N-4/N-6 domain protein [Paracoccus denitrificans
           PD1222]
          Length = 881

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%)

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           + G ++H       ++ R +   T+ G+ + DPF G  T    A KL R  IG+E+ + Y
Sbjct: 784 RKGNEMHLCPLQYDIVDRAIAQFTERGEWVYDPFGGLMTVPFRAVKLGRKGIGVELNKGY 843



 Score = 43.1 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 11/85 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + +  + ++    +P  SV LI    P++ Q        D    D     W +       
Sbjct: 499 RCVHNDCVAETRSMPDASVQLIVTSIPFSTQYEYSPNYADFGHTDDDPHFWQQMGFL--- 555

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIG 106
                  +    RVL+P G +  I 
Sbjct: 556 -------IPELLRVLEP-GRICAIH 572


>gi|296125875|ref|YP_003633127.1| DNA methylase N-4/N-6 domain protein [Brachyspira murdochii DSM
           12563]
 gi|296017691|gb|ADG70928.1| DNA methylase N-4/N-6 domain protein [Brachyspira murdochii DSM
           12563]
          Length = 246

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 33/63 (52%)

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
            ++  K +    P  ++  +L   TK  D+++DP  GSGT+  VA++L R  +G ++   
Sbjct: 24  EEEKHKHYIGATPSYIIWNLLNRYTKEKDLVVDPMAGSGTTIDVARELNRRALGYDINPK 83

Query: 257 YID 259
            + 
Sbjct: 84  ALQ 86



 Score = 42.7 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 53/167 (31%), Gaps = 18/167 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I K ++  +   +  +  D +F DPPY+  +N    +     + A  +          Y 
Sbjct: 90  IFKADARKI--PIEDEKADFVFIDPPYSTHINYSDEKNCIGKLTAKEN---------EYY 138

Query: 83  AFTRAWLLACRRVLKPN--GTLWVIGSYHNIF---RIGTMLQNLNFWILN--DIVWRKSN 135
                 +    R+++ +    L+V  SY   F    IG  L  +        DIV    +
Sbjct: 139 EAMEKVISEIFRIMRKDRYMALYVSDSYEKGFPFMPIGFKLFEIMSKYFMPIDIVSVVRH 198

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
                +G     A E   +              +     N  V +R+
Sbjct: 199 NKTLNKGNYHIAAIENNFYLRGFNYLFIMYKKGNKTIDNNGKVHLRN 245


>gi|168212711|ref|ZP_02638336.1| type III restriction-modification system EcoPI enzyme mod
           [Clostridium perfringens CPE str. F4969]
 gi|170715893|gb|EDT28075.1| type III restriction-modification system EcoPI enzyme mod
           [Clostridium perfringens CPE str. F4969]
          Length = 526

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 53/161 (32%), Gaps = 25/161 (15%)

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
           +         +   +F N +  +I      K   Y                   +     
Sbjct: 187 ITDGKEMSWRWSKNKFINEYYNIIINENDGKFSIYKKTRPLDGERPSQKPKTLFYKPEYS 246

Query: 190 SGSERLRNK---DGEKLHPTQKPEALLSRI--LVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           SG+     K   +GEKL    KP  L+     +VS  +  DIILD F GSGT+     +L
Sbjct: 247 SGNGTNEIKQLFEGEKLFSNPKPTNLIIDFLRIVSFNEKEDIILDFFSGSGTTAHATMQL 306

Query: 245 ------RRSFIGI-------EMKQDY-------IDIATKRI 265
                  R FI +       E  + Y        DI  KRI
Sbjct: 307 NSEDNGNRKFIMVQLPEICDEKSEAYKNGYKTICDIGRKRI 347


>gi|224023444|ref|ZP_03641810.1| hypothetical protein BACCOPRO_00144 [Bacteroides coprophilus DSM
           18228]
 gi|224016666|gb|EEF74678.1| hypothetical protein BACCOPRO_00144 [Bacteroides coprophilus DSM
           18228]
          Length = 633

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 74/207 (35%), Gaps = 28/207 (13%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLY 58
                  + EN++S    K+  I G+++  L+ L    A S+  I+ DPPYN   +  +Y
Sbjct: 79  PDAEHNNLPENKDS----KNIYISGDNLDALKHLLKSYAGSIKCIYIDPPYNTGSDDFVY 134

Query: 59  RPDHS-----LVDAVTDSWDK-----------FSSFEAYDAFTRAWLLACRRVLKPNGTL 102
               +     L   ++ S ++            ++  A+  F    LL  R +L  +G +
Sbjct: 135 TDSFNFTVEELASKLSISEEQASRVLDLTRRGSATHSAWLMFMLPRLLLARDLLSKDGVI 194

Query: 103 WVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
           ++    +    +  +  ++        I+ R++          F   H+ +   +     
Sbjct: 195 FISIDDNEQSNLKLLCDDIFGEENFLSILARRTKSGGGSAADSFAVEHDYICAYARDINY 254

Query: 162 KGYTF----NYDALKAANEDVQMRSDW 184
            G  F         + + ED   +  W
Sbjct: 255 GGKLFIPFTEEYLKRYSEEDEHGKYFW 281


>gi|146295019|ref|YP_001185443.1| DNA methylase N-4/N-6 domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|145566709|gb|ABP77644.1| DNA methylase N-4/N-6 domain protein [Shewanella putrefaciens
           CN-32]
          Length = 633

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 5/74 (6%)

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
             W      G        G   +    P     +++      G ++LDPF G GT   V+
Sbjct: 249 YKWTTGTVEGRW-----SGFGPYYAMFPVDFARKVITKYCPVGGVVLDPFCGRGTVPFVS 303

Query: 242 KKLRRSFIGIEMKQ 255
               R  IG ++  
Sbjct: 304 MATGRYAIGCDINP 317



 Score = 51.1 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 7/99 (7%)

Query: 20  KDKIIKGNSISVLEKLPAK-SVDLIFADPPY----NLQLNG--QLYRPDHSLVDAVTDSW 72
           K +I+ G++  +L K   K   DLI   PPY    N + +   +L+          +DSW
Sbjct: 461 KPQILLGDNRQLLSKYRNKQKADLILTSPPYYGVTNYRYDNWIRLWLLGEGSSLPDSDSW 520

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
            + S    Y    +     C++  K +  ++V       
Sbjct: 521 ARHSDRSEYFKLLKETFYHCKKRAKADAVIYVRTDARKF 559


>gi|88811217|ref|ZP_01126473.1| putative restriction-modification system: methylase [Nitrococcus
           mobilis Nb-231]
 gi|88791756|gb|EAR22867.1| putative restriction-modification system: methylase [Nitrococcus
           mobilis Nb-231]
          Length = 342

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 12/167 (7%)

Query: 21  DKIIKGNSISVLEKL---PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
             +I G +  VLE L       +D I+ DPPYN       Y  D+          +    
Sbjct: 140 HTVINGENFHVLEALTYTHRGKIDAIYIDPPYNTGARDWKYNNDYV-------EGEDLYR 192

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIG-SYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
              + AF    L   R +L+   ++ ++        R+G +L+ +       +V    NP
Sbjct: 193 HSKWLAFMERRLKVARELLRQESSVLIVTIDEKEFLRLGLLLEQIFPEADIQMVSSVINP 252

Query: 137 MPNFRGRRFQNAHETLIWAS-PSPKAKGYTFNYDALKAANEDVQMRS 182
               R   F    E + +          + ++    +   ED ++R 
Sbjct: 253 KGTARSSEFARIDEYIFFVKLGDISISRWRWDMLNARDYGEDQEVRW 299


>gi|291237356|ref|XP_002738601.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
          Length = 736

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 7/102 (6%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNK-------DGEKLHPTQKPEALLSRILVSS 220
           Y A     +   +      PI   +     K       DG  ++  QK       +L   
Sbjct: 416 YWASDGKVKRNVLNIKEDSPISRHNFWRTQKPVLDKDGDGVIVNSQQKHVQFFKTLLDKF 475

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           + P   +LD   G+GT+   A    R+ IG +  +  ++ + 
Sbjct: 476 SYPNQWVLDACCGTGTAIVAAMACGRNCIGFDTDRRQVEHSI 517


>gi|120435233|ref|YP_860919.1| hypothetical protein GFO_0878 [Gramella forsetii KT0803]
 gi|117577383|emb|CAL65852.1| hypothetical protein-possible methyltransferase [Gramella
          forsetii KT0803]
          Length = 100

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 3  QKNSLAINENQNSIFEW--KDKII-KGNSISVLEKLPAKSVDLIFADPPYNLQ 52
          + N   I++N+   FE   K+ ++  GN ++ ++ + + +VDLI  DPPYNL 
Sbjct: 31 EDNFKIISKNKKIEFESIGKNTLLGNGNCVNYMKFIDSNTVDLILTDPPYNLG 83


>gi|291531628|emb|CBK97213.1| DNA methylase [Eubacterium siraeum 70/3]
          Length = 249

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 9/94 (9%)

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
            +  N +++M + W  P          K      P      +   I++  ++ GD++LD 
Sbjct: 9   WEPENFELEMTTHWSFPKRGDWATHDAKWRGNWSPY-----IPRNIILRYSQEGDLVLDQ 63

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           F G GT+   AK L R  IGI++     D+A +R
Sbjct: 64  FAGGGTTLVEAKLLNRDIIGIDIN----DVALER 93



 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 49/146 (33%), Gaps = 28/146 (19%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS- 77
           + +K   G++   L+ +P  S+DLI   PPY             + +   +D  D   S 
Sbjct: 110 YINK---GDARH-LDSIPDDSIDLICTHPPY-------------ADIIKYSDGIDGDLSQ 152

Query: 78  --FEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNI-------FRIGTMLQNLNFWILN 127
              + +    +       RVLK       ++G            F +  + Q+  F +  
Sbjct: 153 LKVKEFLEQMKPVAEESYRVLKKGKFCAILMGDTRQKGCMIPMSFDVMKIFQDAGFTLKE 212

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLI 153
            I+  + N       +     +  L+
Sbjct: 213 LIIKEQHNCRATGYWKTNSVKYNFLL 238


>gi|325686055|gb|EGD28111.1| type III restriction-modification system methyltransferase
           [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 627

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 75/231 (32%), Gaps = 26/231 (11%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN--- 54
           + ++ S+  +     + + ++  I+G+++  L+ L       V +I+ DPPYN   +   
Sbjct: 86  LEKEKSIGRDGTPGGV-DSENIYIEGDNLDALKLLQETYLGKVKMIYIDPPYNTGNDFIY 144

Query: 55  ---------------GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99
                          GQ     + LV   ++S  +F +   +       L   R  L  +
Sbjct: 145 EDDFAQSSDEYADNSGQTDEEGNRLVQ-NSESNGRFHT--DWLNMIYPRLRLARDFLTDD 201

Query: 100 GTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
           G +++    +    +  +   +         V  +    P    + F  +H+ ++     
Sbjct: 202 GVIFISIDDNEQENLKKVCDEIFGSNNFLAQVVWERAYAPINLKKNFSVSHDYILVYGKD 261

Query: 159 PKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
                        ++ N      +D   P  S    +       ++P   P
Sbjct: 262 SSIIQTNGIARTDESDNRYQNPDNDPRGPWKSSDLSVGPAVKANIYPITTP 312



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 20/100 (20%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIE 252
            G+K     KP  L+ R +   T+   I++D F GS T+     +        R +I ++
Sbjct: 391 GGKKYFDYPKPVPLIQRCIQLYTEEDSIVMDFFAGSATTAHAVMQQNAEDGGKRQYILVQ 450

Query: 253 MKQD-----------Y---IDIATKRIASVQPLGNIELTV 278
           + +            Y    DI  +RI         E   
Sbjct: 451 IPEKTDPKKDAFQDGYKTICDIGEERIRRAGKKIKEETDA 490


>gi|320161782|ref|YP_004175007.1| putative DNA methyltransferase [Anaerolinea thermophila UNI-1]
 gi|319995636|dbj|BAJ64407.1| putative DNA methyltransferase [Anaerolinea thermophila UNI-1]
          Length = 997

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 9/112 (8%)

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST-KPGDIILDPFFGSGTSGA 239
             + +     G+  L+++    +    KP +L+SRI+   T      +LD F GSGT+G 
Sbjct: 700 WWNDVETTADGTRLLQDQFNSIVFTNPKPVSLISRIVQLGTHDINQTVLDFFAGSGTTGH 759

Query: 240 VAKKLR------RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
               L       R FI +EM   +  +   RI  V    + E      KRT 
Sbjct: 760 AVINLNREDGRRRKFILVEMAHYFDTVLLPRIKKVT--FSPEWKDGKPKRTA 809


>gi|149193953|ref|ZP_01871051.1| Adenine-specific DNA methylase [Caminibacter mediatlanticus TB-2]
 gi|149135906|gb|EDM24384.1| Adenine-specific DNA methylase [Caminibacter mediatlanticus TB-2]
          Length = 753

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 7/110 (6%)

Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSE-RLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
           F+    +   E V+ +S W     +GS   L  K+ E      K   LL  +        
Sbjct: 523 FDVFIKEVEKEFVKPKSLWNKSNYAGSTGTLILKNMELEFDFPKSPFLLYDLFSLIKNEK 582

Query: 225 DIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYIDIATKRIASV 268
            ++LD F GSGT+     +L       R F+ IEM + + ++   R+  +
Sbjct: 583 FVVLDFFAGSGTTADAVIRLNKDDGGSRKFLLIEMGEHFYNVILPRLKKL 632



 Score = 43.4 bits (101), Expect = 0.058,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 59/205 (28%), Gaps = 31/205 (15%)

Query: 6   SLAINENQNSIFEWKD-KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPD 61
            + + E  ++I +  D K+IK  +   L  L      S+DLI+ DPPYN   +  +Y  +
Sbjct: 282 EINLLEKIDNIEDELDGKLIKSENFQALNTLLPKCKNSIDLIYIDPPYNAPSSEIVYLNN 341

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
                              +       +   +  LK +G        +   ++  +L ++
Sbjct: 342 FK--------------HSTWLTMMENRISLSKSFLKKDGIFECAIDDNERDKLNNLLVSI 387

Query: 122 NFWILNDIV-WRKSNPMPNFRGRRFQNAHETLIWA------------SPSPKAKGYTFNY 168
                         NP      +     HE  +                         N 
Sbjct: 388 YLEENFISSLCVIQNPGGRSDDKFIAYTHEYCLLYANNKNKLTFNKLRKENFKGKINLNP 447

Query: 169 DALKAANEDVQMRSDWLIPICSGSE 193
                +N  +  R +   PI    E
Sbjct: 448 FRRGGSNSTIDKRPNLHYPIYFSIE 472


>gi|148262672|ref|YP_001229378.1| DNA methylase N-4/N-6 domain-containing protein [Geobacter
           uraniireducens Rf4]
 gi|146396172|gb|ABQ24805.1| DNA methylase N-4/N-6 domain protein [Geobacter uraniireducens Rf4]
          Length = 1073

 Score = 56.1 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 57/185 (30%), Gaps = 27/185 (14%)

Query: 23  IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +I G+++  L  L     + V  ++ DPPYN +    LY+  +      +  +D+     
Sbjct: 497 LIHGDNVQALNLLQEQYREQVKCVYTDPPYNTKTRDFLYKDSYKHSSWASMMFDR----- 551

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                    + AC   L   G +      +       +L  +             N   N
Sbjct: 552 ---------ISACHGFLTNEGLICHYIDENEHTIASLVLNEVFGTDNRCGDVVWKNSSKN 602

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
            +       HE L+        KG  FN        E      + +    +G  +    D
Sbjct: 603 DQ-DYVSMQHEYLLL-----AVKGKAFNKGEWNERKEG----LEEIYAAFNGFRKKHETD 652

Query: 200 GEKLH 204
            + +H
Sbjct: 653 WKAIH 657



 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 6/75 (8%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
           G K     K   +  R+L +     + +LD F G+GT+G     L       R +I +E 
Sbjct: 781 GGKTFSNPKDVDISMRLLRAFQTQNEWVLDFFAGTGTAGHAVLALNREDKTRRKYILVEQ 840

Query: 254 KQDYIDIATKRIASV 268
            + +  +   RI  V
Sbjct: 841 GEYFDTVLKPRIQKV 855


>gi|217031478|ref|ZP_03436983.1| hypothetical protein HPB128_21g36 [Helicobacter pylori B128]
 gi|216946678|gb|EEC25274.1| hypothetical protein HPB128_21g36 [Helicobacter pylori B128]
          Length = 175

 Score = 56.1 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 52/134 (38%), Gaps = 17/134 (12%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
             ++  L+++  +S+  I+ DPPYN + +   Y  DH+                 Y+ + 
Sbjct: 1   MEALECLKRIEKESIQTIYIDPPYNTKSSNFEYEDDHA----------------DYEKWI 44

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
           +  L+  + VLK +G +++    + +  +  +   +     N +    +        +  
Sbjct: 45  KEHLILAKAVLKQSGCIFISIDDNKMAEVKIIANEIFGT-HNFLGTFITKQATRSNAKHI 103

Query: 146 QNAHETLIWASPSP 159
              HE ++  + + 
Sbjct: 104 NITHEYVLSYAKNK 117


>gi|325578404|ref|ZP_08148539.1| type III restriction-modification system methyltransferase
           [Haemophilus parainfluenzae ATCC 33392]
 gi|325160140|gb|EGC72269.1| type III restriction-modification system methyltransferase
           [Haemophilus parainfluenzae ATCC 33392]
          Length = 613

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 70/211 (33%), Gaps = 26/211 (12%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN---GQLYRPDHSLVDAVTDSWDK 74
           +  I+G ++ VL+ L      S+ +I+ DPPYN   +      ++ D       +   D 
Sbjct: 81  NIFIEGENLDVLKVLQKSYFNSIKMIYIDPPYNTGNDFVYNDNFKQDLKDYQEKSGELDD 140

Query: 75  FSSFEA---------------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
               +                +       L   + +LK +G +++    +   ++  +  
Sbjct: 141 EGKLKLAFKKNSKENGHFHSKWLNMMLPRLHLAKNLLKDDGVIFISIDDNEQAQLKLLCD 200

Query: 120 NLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK---GYTFNYDALKAA 174
            +      + D++W  +  + N       + +  +   +     K    +    D    +
Sbjct: 201 EVFGEENFIADVIWNSTKSVTNTALISVSHTYTLIYAKNIDYYIKNREKFRLPEDGEGFS 260

Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
           N D   R +W            N+  E ++P
Sbjct: 261 NPDNDPRGEWKADPFQVGGWRPNQQYEIVNP 291



 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 8/106 (7%)

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK-DGEKLHPTQKPE 210
           +I+      A          +   +  +   D +    +G++ L+   DG  +    KP 
Sbjct: 321 IIFGKTGDGAPLRKRFKWEAEERGKVTKTIWDDVETTTNGTQLLKKMFDGTAVFSNPKPI 380

Query: 211 ALLSRILVSSTKPG--DIILDPFFGSGTSGAVAKKL-----RRSFI 249
            LL RIL  ST+    DIILD F GSGT+     +L      R FI
Sbjct: 381 GLLQRILSLSTEKNSNDIILDFFSGSGTTAHAIMELNKDGGNRKFI 426


>gi|307256862|ref|ZP_07538640.1| Type III restriction-modification system methyltransferase
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|306864596|gb|EFM96501.1| Type III restriction-modification system methyltransferase
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
          Length = 656

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 52/168 (30%), Gaps = 21/168 (12%)

Query: 17  FEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN------------------G 55
            + ++  I+G ++ VL+ L      S+ +I+ DPPYN   +                  G
Sbjct: 104 EQTQNIFIEGENLEVLKALQKSYFNSIKMIYIDPPYNTGNDFVYNDNFAQNQTDYQAQTG 163

Query: 56  QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
           ++            ++ +       +       L   R +LK +G +++    +   ++ 
Sbjct: 164 EIGEDGFLKKAFRKNAKENGHFHSNWLNMMLPRLHLARNLLKDDGVIFISIDDNEQAQLK 223

Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
            +   +                   +G         L++A      K 
Sbjct: 224 LLCDEVFGEENFVAELIWDKQHSQQQGLFKTYHEYVLLYAKNINNHKN 271



 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 20/43 (46%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +    KP  +LS  +   T   DIILD F GSG++     +  
Sbjct: 416 VFNNPKPLPMLSDFIRWFTGRADIILDFFSGSGSTAHAILETN 458


>gi|208434206|ref|YP_002265872.1| type III adenine methyltransferase [Helicobacter pylori G27]
 gi|208432135|gb|ACI27006.1| type III adenine methyltransferase [Helicobacter pylori G27]
          Length = 384

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 52/134 (38%), Gaps = 17/134 (12%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
             ++  L+++  +S+  I+ DPPYN + +   Y  +H+                 Y+ + 
Sbjct: 1   MEALECLKRIEKESIQTIYIDPPYNTKSSNFEYEDNHA----------------DYEKWI 44

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
           +  L+  + VLK +G +++    + +  +  +   +     N +    +        +  
Sbjct: 45  KEHLILAKAVLKQSGCIFISIDDNKMAEVKIIANEIFGT-RNFLGTFITKQATRSNAKHI 103

Query: 146 QNAHETLIWASPSP 159
              HE ++  + + 
Sbjct: 104 NITHEYVLSYAKNK 117



 Score = 53.1 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 9/91 (9%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
           Y+            S        G++ L     + L  T KP AL+  +L+ ST    II
Sbjct: 243 YEKYYLKESQDNCLSVLDFYSRQGTKDLEKLGLKGLFKTPKPVALIKYLLLCSTPKDSII 302

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           LD F GSGT+             IE+ +DY 
Sbjct: 303 LDFFAGSGTTAQAV---------IEVNKDYY 324


>gi|19703758|ref|NP_603320.1| Type III restriction-modification system methylation subunit
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|19713894|gb|AAL94619.1| Type III restriction-modification system methylation subunit
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 525

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 52/159 (32%), Gaps = 20/159 (12%)

Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
              S + +    NY +       +   +       S  E  +  D  K+    KP   + 
Sbjct: 235 YVKSYEYRDNNDNYVSPSNPYTTLDYVNKEFSNFNSSLELSKIFDKNKIFDFPKPILFIE 294

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGI-------EMKQDY---- 257
            IL  ST    +ILD F GS T+     +L       R +I +       E  + Y    
Sbjct: 295 DILKYSTNKNSLILDFFSGSATTAHAVMQLNVEDGGNRKYIMVQLPELCDESSEAYKAGY 354

Query: 258 ---IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
               +I  +RI         + ++    R +  + F + 
Sbjct: 355 KNICEIGKERIRRAGEKIKSDESLSLENREKLDIGFKVF 393



 Score = 38.0 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 19/97 (19%)

Query: 42  LIFADPPYNLQLNGQLYRP-----------------DHSLVDAVTDSWDKFSSFEAYDAF 84
           +I+ DPPYN   +                       + S +   TDS  ++ S   +   
Sbjct: 1   MIYIDPPYNTGKDFVYKDNFKDNIENYKKVTEQVSEEGSKLTTNTDSDGRYHSN--WLNM 58

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
               L   R +L  +G +++    + +  +  M   +
Sbjct: 59  MYPRLKLARNLLTDDGAIFISIDDNEVTNLKKMCDEI 95


>gi|296454088|ref|YP_003661231.1| adenine specific DNA methylase Mod [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296183519|gb|ADH00401.1| adenine specific DNA methylase Mod [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 644

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 60/197 (30%), Gaps = 21/197 (10%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLV 65
           + E        ++  I+G+++  L+ L       V LI+ DPPYN   +          V
Sbjct: 90  VKERSKDWDTTRNLYIEGDNLDALKLLRENYAGKVKLIYIDPPYNTGHDFIYKDNFGKTV 149

Query: 66  DAVTDSWDKFSS---------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
            A       +                    + +     LL  R +L  +G + +    H 
Sbjct: 150 AAAKSESGDYDDEGGQLVANPESNGRFHSDWCSMIYPRLLLARDLLTNDGVILISVDDHE 209

Query: 111 IFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF-N 167
              +  +   +         +VW+      N         HE ++  S SP  + +   +
Sbjct: 210 AVNLKKICDEIFGSESFCAQLVWKSRQNKDNRSVTGVSIDHEYVLMYSKSPDKRVFRGAD 269

Query: 168 YDALKAANEDVQMRSDW 184
                  N D   R  W
Sbjct: 270 RLEDAYQNPDNDPRGPW 286



 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 71/224 (31%), Gaps = 36/224 (16%)

Query: 106 GSYHNIFRIGTMLQNLNFWILNDIV---WRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
           G + +   +G   ++    +  D++      +   P    R  Q     LI         
Sbjct: 284 GPWQSANMVGLATEDARPNLHYDLINPKTGINYGKPEKGWRYDQRTMNRLIKDDKIIWPS 343

Query: 163 GYTFNYDALKAANE------DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
                    K  +E               I   +GS  +R     ++    KP  L+ ++
Sbjct: 344 SPDGRPRRKKFLSELTSDLAGFSSIIGDRIYTRNGSLEIRKLFNGQMFDFPKPSQLIQQL 403

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGI------------------- 251
           +   T   DI+LD F GS +S              R FI I                   
Sbjct: 404 IDQGTSNEDIVLDFFSGSASSAVATLNQNATGNGHRRFIMIQMPEAVGENSEAAKAGYST 463

Query: 252 --EMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
             E+ ++ I  A ++I S     N +LT+    +  P + F +L
Sbjct: 464 ICEIGEERIRRAGEKIKSEIEAENAQLTLDGTPKKVPDIGFRVL 507


>gi|238762725|ref|ZP_04623694.1| DNA methylase N-4/N-6 domain protein [Yersinia kristensenii ATCC
           33638]
 gi|238699030|gb|EEP91778.1| DNA methylase N-4/N-6 domain protein [Yersinia kristensenii ATCC
           33638]
          Length = 729

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 49/138 (35%), Gaps = 11/138 (7%)

Query: 21  DKIIKGNSISVLEKL---PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
             II G +  VL+ L       V+ I+ DPPYN       Y  D+        + D    
Sbjct: 158 HTIINGENYHVLKALTYTHRGKVNAIYIDPPYNTGAKDWKYNNDYV-------AGDDLYR 210

Query: 78  FEAYDAFTRAWLLACRRVLKP-NGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
              + A     LL  + +L P +  L          R+G +L+ +      ++V    + 
Sbjct: 211 HSKWLAMMERRLLLAKELLNPADSVLIATIDEKEYLRLGLLLEQVFPEAQIEMVTSIISA 270

Query: 137 MPNFRGRRFQNAHETLIW 154
               R  +F    E + +
Sbjct: 271 KGVARVGQFSRVEEFIYF 288



 Score = 40.4 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 51/135 (37%), Gaps = 16/135 (11%)

Query: 170 ALKAANEDVQMRSDWLIPICS----GSERLRNKDGEKLHPTQKPEALLSRILV--SSTKP 223
           A+    + V  +  W +   +    GS  L     E+  P  K    +   L    + KP
Sbjct: 447 AVHRERKGVIPKRVWNMASHNAENGGSLILSKLIPERRFPFPKSLYAVEDALRFFVADKP 506

Query: 224 GDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYIDIATK-RIASVQPLGNIEL 276
             +++D F GSGT+     +L       R  I I   +   D   K R   ++P G+ E 
Sbjct: 507 EAVVVDFFSGSGTTVHAVMRLNRQDGGRRQCISITNNEVSADEQKKLRELGLRP-GDQEW 565

Query: 277 TVLT--GKRTEPRVA 289
                    T+PRVA
Sbjct: 566 EKWGICDHITKPRVA 580


>gi|266618972|ref|ZP_06111909.1| ferrichrome transport ATP-binding protein FhuC [Clostridium
           botulinum Bf]
 gi|263529020|gb|EEZ28444.1| ferrichrome transport ATP-binding protein FhuC [Clostridium
           botulinum Bf]
          Length = 123

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 52/144 (36%), Gaps = 26/144 (18%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I  GN + +++K+  KS+D++ +D P+ +                  + WDK   FE 
Sbjct: 5   NNIYLGNCLEIMKKIDDKSIDMVLSDLPFGM----------------TNNEWDKAIPFE- 47

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                        R+ K N ++ ++ +   +F    ++ N  ++  + I   K       
Sbjct: 48  ------PMWQEINRIAKDNASIALMAA--GVFTSELVVSNKKYYRYSWIWKPKEKSNFLN 99

Query: 141 RGRRFQNAH-ETLIWASPSPKAKG 163
             R     H +  I+    P    
Sbjct: 100 ANRMPLRQHIDIPIFYKRLPVYNP 123


>gi|329920538|ref|ZP_08277270.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners SPIN
           1401G]
 gi|328936214|gb|EGG32667.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners SPIN
           1401G]
          Length = 736

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 52/144 (36%), Gaps = 9/144 (6%)

Query: 21  DKIIKGN---SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
             +I+ +   ++ +LE L A  VD I+ DPPYN          D    +   DS D +  
Sbjct: 127 HTLIEADNYHALQLLEYLYAGKVDCIYIDPPYNTGAK------DWKYNNDYVDSSDAYRH 180

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            +      +   LA + +   +  L V         +G +L+ L       +V    N  
Sbjct: 181 SKWLSMMEKRLKLAKKLLNPADSVLIVTIDEKEYLHLGCLLEELFPDARMQMVSSVINSK 240

Query: 138 PNFRGRRFQNAHETLIWASPSPKA 161
              RG  F   +E L +      +
Sbjct: 241 GVSRGSEFFRVNEYLFFVKIGDCS 264



 Score = 39.2 bits (90), Expect = 0.96,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 6/64 (9%)

Query: 222 KPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           KP  +ILD F GSGT+      L       R  I +   +   + A K        G+ E
Sbjct: 473 KPNALILDFFAGSGTTLHAVNLLNAEDGGHRRCIMVTNNEVSDEEAKKLKKDGFKPGDPE 532

Query: 276 LTVL 279
              L
Sbjct: 533 WERL 536


>gi|168701821|ref|ZP_02734098.1| hypothetical protein GobsU_20013 [Gemmata obscuriglobus UQM 2246]
          Length = 414

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 30/66 (45%)

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           +  G   +P +      +R++ +   PG  +LDPF GSGT    +    R+  G ++   
Sbjct: 55  HVHGFHTYPARMHPITAARLVRAFAPPGGTVLDPFCGSGTVLVESLVAGRNARGTDLNPL 114

Query: 257 YIDIAT 262
            + +A 
Sbjct: 115 AVLLAQ 120



 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 9/94 (9%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY---RPDHSLVDAVTDSWDKFSSF 78
            +++ ++   L++LP   V  +   PPY    +   +   R     +D    +  +  S 
Sbjct: 255 TVVQDDATD-LKRLPPGFVGAVVTSPPYAATYDYIAHHSLRLRWLGLDPAPLARGEIGSR 313

Query: 79  EAYDAFT-----RAWLLACRRVLKPNGTLWVIGS 107
            AY   T      AW     R  +  G L   G+
Sbjct: 314 TAYARLTPAAARTAWCRELDRFFRAVGRLLPPGA 347


>gi|163858554|ref|YP_001632852.1| type III restriction system methylase [Bordetella petrii DSM 12804]
 gi|163262282|emb|CAP44585.1| type III restriction system methylase [Bordetella petrii]
          Length = 632

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 66/187 (35%), Gaps = 29/187 (15%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRP---------------- 60
           ++ +I+G+++ VL+ L    A  V LI+ DPPYN   +                      
Sbjct: 98  QNLMIEGDNLEVLKLLQKSYAGKVKLIYIDPPYNTGKDFVYPDNFQDNIKNYLELTGQVE 157

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
               + + T++  +F +   +       L   R +L+ +GT+++      + R+     +
Sbjct: 158 GGQKISSNTEASGRFHT--DWLNMIYPRLKLARNLLRRDGTIFISIDDGELPRLRVAADD 215

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNA---HETLIWASPSPKAKGYTFNYDALKAANED 177
           +     N +         N   R    A   HE ++               D  + +N D
Sbjct: 216 IFGE-ENFLACFIWKSRQNKDNRTVTGASVDHEYIV----CYGNSIRGAARDRSQYSNPD 270

Query: 178 VQMRSDW 184
              R DW
Sbjct: 271 GDPRGDW 277



 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 51/139 (36%), Gaps = 27/139 (19%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA------VAKKLRRSFIGIEMKQ 255
           ++    KP  L++ ++   ++  DIILD F GSGTS         A    R +I +++  
Sbjct: 380 RIFNFPKPVELVAGLIEQGSEGDDIILDFFAGSGTSAHASMYQNAADGGNRRYITVQL-- 437

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
                        +PL   +    T      ++  +  +        ++        +A 
Sbjct: 438 ------------PEPLDPADREQKTAADFCDKLGKSRTI-------AELTKERIRRAAAK 478

Query: 316 VCADGTLISGTELGSIHRV 334
           V A+  L +G     + ++
Sbjct: 479 VKAENPLFAGDTGFRVFKL 497


>gi|148377420|ref|YP_001256296.1| Type III restriction-modification system:methylase [Mycoplasma
           agalactiae PG2]
 gi|148291466|emb|CAL58851.1| Type III restriction modification system:Methylase [Mycoplasma
           agalactiae PG2]
          Length = 571

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 68/179 (37%), Gaps = 18/179 (10%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKL-------PAKSV--DLIFADPPYNL 51
           + +  SL+ N + N   +  + +I G +   L+ L        +++V  D+I+ DPPYN 
Sbjct: 76  LKKDESLSFNNDNN---KPANTLIIGENYDALKNLIVIERESQSETVNYDVIYIDPPYNT 132

Query: 52  Q---LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
           +    +G        +  +     DKFS    +       L    ++LK +G ++V    
Sbjct: 133 ESSLTDGNNLSEKDEVSSSKFIYRDKFSRT-GWLNMLNERLRLSHQLLKEDGVIFVSIDD 191

Query: 109 HNIFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
                +  ++  +      + +IVW++ N              E ++  S +     + 
Sbjct: 192 SEHAYLKVLMDEIFGEENFVCNIVWQRKNTGGGSGKAGIDVETEYILIYSKNINKVNWN 250



 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 10/109 (9%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL--- 244
              G + + +    K     KP  L+  ++         +LD + GSGT+G    +L   
Sbjct: 386 TTKGKQIVISILENKDFSFPKPVDLIKFLINLHPNKETRVLDFYAGSGTTGHAVMELNKE 445

Query: 245 ---RRSFIGIEMKQDYI--DIATKRIASVQP--LGNIELTVLTGKRTEP 286
               R++  +   ++ I  ++  +R+  +      N E      K+ EP
Sbjct: 446 DGGNRNYTLVTNNENNIATNVCYERLYRINNGISTNNESNFDWIKKNEP 494


>gi|322378807|ref|ZP_08053236.1| adenine-specific DNA methylase [Helicobacter suis HS1]
 gi|321148837|gb|EFX43308.1| adenine-specific DNA methylase [Helicobacter suis HS1]
          Length = 468

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 49/145 (33%), Gaps = 9/145 (6%)

Query: 24  IKGNSISVLEKLP---AKSVDLIFADPPYN---LQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           I G +   L+ L       VD I+ DPPYN    + +G  Y+   + +       DKF  
Sbjct: 41  IFGENYDALKNLLVLYRGCVDCIYIDPPYNTESTKQDGNDYKSKEN-ISGKFGYRDKFMR 99

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNP 136
              +       L   + +L P G +++         +  +   +           RK+  
Sbjct: 100 T-GWLNMLNERLKLAKDLLSPKGVIFISIDDSEQAYLKVLCDEIFGEGNFVGDFIRKTKS 158

Query: 137 MPNFRGRRFQNAHETLIWASPSPKA 161
             N         HE L+  + +  +
Sbjct: 159 TINDAKIGVNYQHEFLLGYAKNKIS 183



 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 9/94 (9%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQ 255
           +     K  A + +IL+ +T P  +ILD + GSGT+G    +L       R  I +   +
Sbjct: 314 ESFNYPKSAAFIQKILLHATSPNSLILDFYAGSGTTGQAVMELNREDGGNRRCILVTSNE 373

Query: 256 DYID--IATKRIASV-QPLGNIELTVLTGKRTEP 286
           + I   +  +RI  +   +G    T    KR EP
Sbjct: 374 NNIAKGVMYERIYRICHGVGTKNETFGWTKRNEP 407


>gi|284097893|ref|ZP_06385852.1| modification methylase [Candidatus Poribacteria sp. WGA-A3]
 gi|283830595|gb|EFC34746.1| modification methylase [Candidatus Poribacteria sp. WGA-A3]
          Length = 106

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG-QLYRPDHSLVDAVTDSWDKFSSFE 79
          + +  G+ + V+     +S+DLI  DPP+N      +++R    L+D    ++D    ++
Sbjct: 8  NTLYYGDCLDVMADFENRSIDLICLDPPFNSNEKYNKVFRNSGLLIDPQIKAFDDVWLWD 67


>gi|114566985|ref|YP_754139.1| adenine specific DNA methylase Mod-like protein [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114337920|gb|ABI68768.1| Adenine specific DNA methylase Mod-like protein [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 633

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 56/162 (34%), Gaps = 10/162 (6%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + I++G+++  L  L       +D+I+ DPPYN    G+             DS+     
Sbjct: 84  NFILEGDNLHSLRLLEKTHKGRIDVIYIDPPYN---RGKDDFVYDDDYVGTEDSFK---- 136

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
              + +F    L    ++L  +G ++V    +    +  ++ ++       I   +    
Sbjct: 137 HSKWLSFMEKRLRIAYQLLSEDGLMFVSIDDNEQAALKNLIDDIFSEDNFIIAMPRITKK 196

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
                  F   H+ ++  +   K       +     + ED  
Sbjct: 197 SGKTTGSFSKNHDYVLVYTKQNKDIFVMEEHIDPAFSYEDEW 238



 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 8/81 (9%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYI--D 259
           KP  L+ R++ +      IILD F GSGT+     +L       R FI     Q+ I   
Sbjct: 386 KPVELIKRLIKNHYNKNGIILDFFAGSGTTAQAVLELNVEDGGHRQFILCTNNQNNICEK 445

Query: 260 IATKRIASVQPLGNIELTVLT 280
           I  KR   V    + E +V T
Sbjct: 446 ITYKRCRDVITTYDFEKSVRT 466


>gi|307263068|ref|ZP_07544690.1| Type III restriction-modification system methyltransferase
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
 gi|306871694|gb|EFN03416.1| Type III restriction-modification system methyltransferase
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
          Length = 469

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 58/180 (32%), Gaps = 21/180 (11%)

Query: 5   NSLAINENQNSIF---EWKDKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLNGQLY 58
            +L  +++ NS     +  +  I+G+S+  L+ L +     + +I+ DPPYN        
Sbjct: 27  KALTEDKDHNSEPVNKDSANIFIEGDSLDALKLLQSSYSGLIKMIYIDPPYNTGKRFIYP 86

Query: 59  RPDHSLVDAVTDSWD---------------KFSSFEAYDAFTRAWLLACRRVLKPNGTLW 103
                  D +  +                 K  S  A+  F    L   R +LK +G ++
Sbjct: 87  DKFSWAADELAIALGVSNAEAERIIKTTKPKHLSHSAWLTFMYPRLHLARNLLKDDGVIF 146

Query: 104 VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
           +    +   ++  +   +                   +G         L++A      K 
Sbjct: 147 ISIDDNEQAQLKLLCDEVFGEENFVAELIWDKQHSQQQGLFKTYHEYVLLYAKNINNHKN 206



 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 20/43 (46%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +    KP  +LS  +   T   DIILD F GSG++     +  
Sbjct: 351 VFNNPKPLPMLSDFIRWFTGRADIILDFFSGSGSTAHAILETN 393


>gi|313905792|ref|ZP_07839151.1| DNA methylase N-4/N-6 domain protein [Eubacterium cellulosolvens 6]
 gi|313469398|gb|EFR64741.1| DNA methylase N-4/N-6 domain protein [Eubacterium cellulosolvens 6]
          Length = 698

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 56/157 (35%), Gaps = 11/157 (7%)

Query: 17  FEWKDKIIKGN---SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
            ++   +I+ +   ++ +LE L A  VD I+ DPPYN          D    +   DS D
Sbjct: 124 DDFWHALIEADNYHALQLLEYLYAGKVDCIYIDPPYNTGAK------DWKYNNDYVDSND 177

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG-SYHNIFRIGTMLQNLNFWILNDIVWR 132
            +   + + +     L   +++L  + ++ ++         +G +L+ L       ++  
Sbjct: 178 VYRHSK-WLSMMERRLKLAKKLLNMSDSVLIVTIDEKEYLHLGCLLEELFPEAQMQMITS 236

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
             +     R   F    E +            T +  
Sbjct: 237 VISRNGTSRENEFSRVEEYVFILRFGKMGVCRTNDNM 273


>gi|322380655|ref|ZP_08054807.1| type II restriction-modification adenine-specific DNA methylase
           [Helicobacter suis HS5]
 gi|321146977|gb|EFX41725.1| type II restriction-modification adenine-specific DNA methylase
           [Helicobacter suis HS5]
          Length = 468

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 49/145 (33%), Gaps = 9/145 (6%)

Query: 24  IKGNSISVLEKLP---AKSVDLIFADPPYN---LQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           I G +   L+ L       VD I+ DPPYN    + +G  Y+   + +       DKF  
Sbjct: 41  IFGENYDALKNLLVLYRGCVDCIYIDPPYNTESTKQDGNDYKSKEN-ISGKFGYRDKFMR 99

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNP 136
              +       L   + +L P G +++         +  +   +           RK+  
Sbjct: 100 T-GWLNMLNERLKLAKDLLSPKGVIFISIDDSEQAYLKVLCDEIFGEGNFVGDFIRKTKS 158

Query: 137 MPNFRGRRFQNAHETLIWASPSPKA 161
             N         HE L+  + +  +
Sbjct: 159 TINDAKIGVNYQHEFLLGYAKNKIS 183



 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 9/94 (9%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQ 255
           +     K  A + +IL+ +T P  +ILD + GSGT+G    +L       R  I +   +
Sbjct: 314 ESFNYPKSAAFIQKILLHATSPNSLILDFYAGSGTTGQAVMELNREDGGNRRCILVTSNE 373

Query: 256 DYID--IATKRIASV-QPLGNIELTVLTGKRTEP 286
           + I   +  +RI  +   +G    T    KR EP
Sbjct: 374 NNIAKGVMYERIYRICHGVGTKNETFGWTKRNEP 407


>gi|170697761|ref|ZP_02888848.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia ambifaria IOP40-10]
 gi|170137376|gb|EDT05617.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia ambifaria IOP40-10]
          Length = 663

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 60/167 (35%), Gaps = 23/167 (13%)

Query: 20  KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQL----------NGQLYRPDHSLVD 66
           ++  I+G+++  L+ L       V +I+ DPPYN             +   Y    + V+
Sbjct: 112 RNLFIEGDNLDALKLLQETYLGKVKMIYIDPPYNTGKDFIYEDDFSSDATSYLLKSNQVE 171

Query: 67  AVTD-------SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
              D       +  +F S   + +   A L   R +L  +G +++    + +  +  +  
Sbjct: 172 VSGDRLVVNVETNGRFHS--DWLSMIYARLRLARNLLSEDGVIFISIDDNEVDNLRKVCS 229

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
            +     N I             ++   +HE ++  + +  A    +
Sbjct: 230 EVFGE-GNFIAQIVWEGANKNDAKQIGVSHEYVLVYAKNRSAVPREW 275



 Score = 43.8 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 25/110 (22%)

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD---IILDPFFGSGTSGA 239
            +  P  S SERL +  G  +    K E ++++ +  +T   D   I++D F GS T+  
Sbjct: 407 VFYQPARSASERLASLLGAGIFDFPKDETVIAKFIEMATTGADDDCIVMDFFAGSATTAH 466

Query: 240 VAKKLR------RSFIGIEMKQDYI---------------DIATKRIASV 268
              +L       R F+ +++  +                 D++ +RI   
Sbjct: 467 AVMQLNADDGKRRRFVLVQL-PEACVERSAAAEAGYRTIADVSKERIRRA 515


>gi|262276679|ref|ZP_06054481.1| DNA methylase N-4/N-6 domain protein [alpha proteobacterium
           HIMB114]
 gi|262225156|gb|EEY75606.1| DNA methylase N-4/N-6 domain protein [alpha proteobacterium
           HIMB114]
          Length = 353

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 73/206 (35%), Gaps = 25/206 (12%)

Query: 21  DKIIKGNSISV--LEKLPAKSV-DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            K++ G+S+     + L    + ++ F  PPYN    G L    ++  +    S+D   +
Sbjct: 164 HKLLCGDSLQENNYKLLLNNKIANISFTSPPYN---AGSLNIQGNNRTEEKYKSFDDNMT 220

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIG-SYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
              YD F    L       +     + IG   +N   I  ++ + N    + I W+KS+ 
Sbjct: 221 LSEYDEFININLTYLLEYSEE--VFYNIGLVQNNKKSIFNLIHSFNTKFKDIIYWKKSSV 278

Query: 137 MPNFRGRRFQNAHETLI-WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
            P+ +     N  E ++ +     K K   F+  +     E     S+            
Sbjct: 279 APHIQKGIINNMVEFILAFGDGKRKFKNPQFSQGSYYNVIEGKNASSNEF---------- 328

Query: 196 RNKDGEKLHPTQKPEALLSRILVSST 221
                 K+H    P  L   I+ + T
Sbjct: 329 -----SKIHKATFPIYLPENIIKNFT 349


>gi|315638217|ref|ZP_07893399.1| type III restriction/modification enzyme, methylase subunit
           [Campylobacter upsaliensis JV21]
 gi|315481753|gb|EFU72375.1| type III restriction/modification enzyme, methylase subunit
           [Campylobacter upsaliensis JV21]
          Length = 452

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 70/218 (32%), Gaps = 39/218 (17%)

Query: 5   NSLAINENQNSIFEW-----KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQ 56
           N+L        + E      ++ IIKG+++  L+ L       + +I+ DPPYN +    
Sbjct: 74  NALYSTPTTKELKELDPKHSQNIIIKGDNLHALKLLKSAYDGKIKMIYIDPPYNTKNEKF 133

Query: 57  LYRPD-------------------------HSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
           +Y  +                          S V     +     +   + +F    L  
Sbjct: 134 IYDDNFVKEYQKLLIELDLLKLDSNGKVLEKSEVLHFLTNPSGDKAHSGWLSFMLPRLKL 193

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW------ILNDIVWRKSNPMPNFRGRRF 145
            R +LK +G +++    +    +  +   +         +  ++   +   + + +  + 
Sbjct: 194 ARDLLKDDGVIFISIDDNEQANLKILCDEIFGEENFVANLCVELSTTQGMKVASAQKGQI 253

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
               E ++  +   +   +       K  ++   +  D
Sbjct: 254 VKNAEYILCYAKDNQNFKFERPLYTAKEWDDHYSVYID 291


>gi|189218340|ref|YP_001938982.1| DNA modification methylase [Methylacidiphilum infernorum V4]
 gi|189185198|gb|ACD82383.1| DNA modification methylase [Methylacidiphilum infernorum V4]
          Length = 964

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 17/120 (14%)

Query: 34  KLPAKSVDLIFADPPY--NLQLNGQLYRPD-------HSLVDAVTDSWDKFSSFEAYDAF 84
           ++P  SVD IF DPP+  N+  + Q Y  +       + + +A+T+   K   FE Y   
Sbjct: 531 QIPDNSVDFIFTDPPFGGNINYSEQNYLAEWWLRVFTNKINEAITNPAQKKGLFE-YQQI 589

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHN-----IFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                    RVLKP    W++  +HN        I   L+   F +    V  K +   +
Sbjct: 590 MTRCFCEYYRVLKPGR--WMVMVFHNSSNAIWAAIQQALEAAGFVVATVAVLDKVHSTLH 647



 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 46/127 (36%), Gaps = 32/127 (25%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------------------RRS 247
           T+ P   +   L+  T+PGDI+LD F G+G +G     L                  +R 
Sbjct: 173 TKVPPKAIQHYLLHYTEPGDIVLDAFCGTGMTGVACLLLEHPDHELAATMDTDSKWGKRH 232

Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE-PRVAFNLLVERGLIQPGQILT 306
            I I++      IA           ++    L  K  E P      +++R +I     LT
Sbjct: 233 AILIDLSPAATFIA-----------SVMNAPLPPKLAEGPDGDLGQIIQRDIIPL--YLT 279

Query: 307 NAQGNIS 313
           +  G   
Sbjct: 280 DWDGKEV 286


>gi|217033449|ref|ZP_03438879.1| hypothetical protein HP9810_1g63 [Helicobacter pylori 98-10]
 gi|216944154|gb|EEC23582.1| hypothetical protein HP9810_1g63 [Helicobacter pylori 98-10]
          Length = 384

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 17/134 (12%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
             ++  L+++  +S+  I+ DPPYN + +   Y   H+                 YD + 
Sbjct: 1   MEALECLKRIEKESIQTIYIDPPYNTKSSNFEYEDAHA----------------DYDKWI 44

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
           +  L+  + VLK +G +++    + +  +  +   +     N +    +        +  
Sbjct: 45  KEHLILAKAVLKQSGCIFISIDDNKMAEVKIIANEVFGT-RNFLGTFITKQATRSNAKHI 103

Query: 146 QNAHETLIWASPSP 159
              HE ++  + + 
Sbjct: 104 NITHEYVLSYAKNK 117



 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 11/107 (10%)

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           L + +         +    LK + ++     D+      G++ L     + L  T KP A
Sbjct: 229 LYYQNRLIFKNNRPYEKYYLKESQDNCLSVLDFY--SRQGTKDLEKLGLKGLFKTPKPVA 286

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           L+  +L+ ST    IILD F GSGT+             IE+ +DY 
Sbjct: 287 LIKYLLLCSTPKDSIILDFFAGSGTTAQAV---------IEVNKDYY 324


>gi|257067738|ref|YP_003153993.1| adenine specific DNA methylase Mod [Brachybacterium faecium DSM
           4810]
 gi|256558556|gb|ACU84403.1| adenine specific DNA methylase Mod [Brachybacterium faecium DSM
           4810]
          Length = 646

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 56/164 (34%), Gaps = 21/164 (12%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYN----------------- 50
           +N       K+  I+G+++ VL+ L       + LI+ DPPYN                 
Sbjct: 79  KNSKDWDTTKNVFIEGDNLEVLKILQKHYHAKIKLIYIDPPYNTGKDFVYPDNYREGLQT 138

Query: 51  -LQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
            L+  GQL            +S +      A+ +     L   R +L  +G + +  +  
Sbjct: 139 YLEYTGQLSEEGKPKSSNAKNSAENPQYHSAWLSMMYPRLKLARNLLTEDGVILISINDV 198

Query: 110 NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
              ++  +   +         +   N     +  + +  HE ++
Sbjct: 199 EQAQLRRLCDEVFGESNLISQFVWLNEGNVDQQSKVKGVHEYVL 242



 Score = 40.0 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 204 HPTQKPEALLSRILVSSTKPGD--IILDPFFGSGTSGAVAKKLRRS 247
               KP  L+  ++   TKP +  ++LD F GS T+          
Sbjct: 406 FSYPKPVGLIEYLVSVFTKPKEEAVVLDFFSGSATTAHAVMAANLR 451


>gi|307245675|ref|ZP_07527761.1| Type III restriction-modification system methyltransferase
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307259089|ref|ZP_07540819.1| Type III restriction-modification system methyltransferase
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|306853377|gb|EFM85596.1| Type III restriction-modification system methyltransferase
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306866756|gb|EFM98614.1| Type III restriction-modification system methyltransferase
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
          Length = 614

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 52/168 (30%), Gaps = 21/168 (12%)

Query: 17  FEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN------------------G 55
            + ++  I+G ++ VL+ L      S+ +I+ DPPYN   +                  G
Sbjct: 63  EQTQNIFIEGENLEVLKALQKSYFNSIKMIYIDPPYNTGNDFVYNDNFAQNQTDYQAQTG 122

Query: 56  QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
           ++            ++ +       +       L   R +LK +G +++    +   ++ 
Sbjct: 123 EIGEDGFLKKAFRKNAKENGHFHSNWLNMMLPRLHLARNLLKDDGVIFISIDDNEQAQLK 182

Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
            +   +                   +G         L++A      K 
Sbjct: 183 LLCDEVFGEENFVAELIWDKQHSQQQGLFKTYHEYVLLYAKNINNHKN 230



 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 20/43 (46%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +    KP  +LS  +   T   DIILD F GSG++     +  
Sbjct: 375 VFNNPKPLPMLSDFIRWFTGRADIILDFFSGSGSTAHAILETN 417


>gi|240047349|ref|YP_002960737.1| putative type III restriction-modification sys [Mycoplasma
           conjunctivae HRC/581]
 gi|239984921|emb|CAT04914.1| Putative type III restriction-modification sys [Mycoplasma
           conjunctivae]
          Length = 386

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 56/196 (28%), Gaps = 15/196 (7%)

Query: 51  LQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
           +   G+ Y  D   V + +      S      A   +     R ++ P    + +G    
Sbjct: 92  INERGKYYLIDLDHVSSSSSFQYSVSLDYEIQAPDGSMFKNYRNIINPMSYRYTLGKDLF 151

Query: 111 IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
            F        +      D           ++  R      T+    P        +    
Sbjct: 152 DFSFNNGFIEIQQKKAKD-------GTKYWKAYRKVYEKVTIKREKP--------YQIIP 196

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
                    + SD  I   +G   L +    K     KP  L+  I+   +     ILD 
Sbjct: 197 RVKGKNFSNLISDVKITTSNGKRNLISIIQNKDFAFPKPVKLIKYIINLISNKNARILDF 256

Query: 231 FFGSGTSGAVAKKLRR 246
           F GSGT+     +L R
Sbjct: 257 FAGSGTTAHAVLELNR 272


>gi|15837837|ref|NP_298525.1| hypothetical protein XF1235 [Xylella fastidiosa 9a5c]
 gi|11361690|pir||C82707 hypothetical protein XF1235 [imported] - Xylella fastidiosa
           (strain 9a5c)
 gi|9106213|gb|AAF84045.1|AE003957_6 hypothetical protein XF_1235 [Xylella fastidiosa 9a5c]
          Length = 51

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 22/36 (61%)

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           P  GSGT+G  A +    FIG+E+   Y D+A +R+
Sbjct: 3   PLAGSGTTGVAALRAGHRFIGMELSLGYSDVAKQRL 38


>gi|148265301|ref|YP_001232007.1| adenine-specific DNA methylase [Geobacter uraniireducens Rf4]
 gi|146398801|gb|ABQ27434.1| Adenine-specific DNA methylase containing a Zn-ribbon-like protein
           [Geobacter uraniireducens Rf4]
          Length = 596

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 30/56 (53%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +KP  + S+ +   +K G+++LDPF GSG +   A   +R  +G ++    + +  
Sbjct: 69  KKPANVFSKCISFFSKEGELVLDPFCGSGITVVEAIIEKRKAVGFDLNPFAVYLTE 124



 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 57/175 (32%), Gaps = 13/175 (7%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNL-QLNGQLYRPDHSLVDAVTDSWDKFSSFE- 79
           K++  +S      L   SVD I  DPPY    +         +L     +  D   +F  
Sbjct: 338 KVLIHDSRKKFASLQDNSVDYILTDPPYGGEGIQYGELSMLWNLWLGFHEDLDAEVAFNP 397

Query: 80  -------AYDAFTRAWLLACRRVLKPNGTL---WVIGSYHNIFRIGTMLQNLNFWILNDI 129
                   Y A  +       R+LKP   +   +          + +  ++  F ++   
Sbjct: 398 YRNKSEVDYAAGLKKVFAEAYRLLKPGRWMSVTFNNKDIKVWNSLISACKDSGFELVVVA 457

Query: 130 VWRKSNPMPNFRGRRFQNAHETLI-WASPSPKAKGYTFNYDALKAANEDVQMRSD 183
             R+S P             + LI +  P    K + F+       +E +++  +
Sbjct: 458 PIRRSAPSLTESVMTKAPKSDVLIHFRKPDGSIKRHVFSKGLFNVFDETLRLTHE 512


>gi|91204080|emb|CAJ71733.1| similar to DNA-methyltransferase (cytosine-specific) [Candidatus
           Kuenenia stuttgartiensis]
          Length = 437

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 11/100 (11%)

Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSST-- 221
           FN     +  + +    +W +      E    K   +LHP +      L+   L   T  
Sbjct: 59  FNGKREVSWKDQLGNDLNWALSFDQYKEAETTKHVHRLHPYKGKFIPQLVEYFLDDHTDN 118

Query: 222 -------KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                  K GDIILDPF GSGT+     +L    IGI++ 
Sbjct: 119 FKTEIYFKKGDIILDPFSGSGTTMVQCCELGMHAIGIDVS 158


>gi|46143331|ref|ZP_00135457.2| COG2189: Adenine specific DNA methylase Mod [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208289|ref|YP_001053514.1| type III restriction-modification system methyltransferase
           [Actinobacillus pleuropneumoniae L20]
 gi|126097081|gb|ABN73909.1| type III restriction-modification system methyltransferase
           [Actinobacillus pleuropneumoniae serovar 5b str. L20]
          Length = 615

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 52/168 (30%), Gaps = 21/168 (12%)

Query: 17  FEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN------------------G 55
            + ++  I+G ++ VL+ L      S+ +I+ DPPYN   +                  G
Sbjct: 63  EQTQNIFIEGENLEVLKALQKSYFNSIKMIYIDPPYNTGNDFVYNDNFAQNQTDYQAQTG 122

Query: 56  QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
           ++            ++ +       +       L   R +LK +G +++    +   ++ 
Sbjct: 123 EIGEDGFLKKAFRKNAKENGHFHSNWLNMMLPRLHLARNLLKDDGVIFISIDDNEQAQLK 182

Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
            +   +                   +G         L++A      K 
Sbjct: 183 LLCDEVFGEENFVAELIWDKQHSQQQGLFKTYHEYVLLYAKNINNHKN 230



 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 19/42 (45%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
               KP  +LS  +   T   DIILD F GSG++     +  
Sbjct: 376 FNNPKPLPMLSDFIRWFTGRADIILDFFSGSGSTAHAILETN 417


>gi|165976230|ref|YP_001651823.1| adenine specific DNA methylase Mod [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165876331|gb|ABY69379.1| adenine specific DNA methylase Mod [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 615

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 52/168 (30%), Gaps = 21/168 (12%)

Query: 17  FEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN------------------G 55
            + ++  I+G ++ VL+ L      S+ +I+ DPPYN   +                  G
Sbjct: 63  EQTQNIFIEGENLEVLKALQKSYFNSIKMIYIDPPYNTGNDFVYNDNFAQNQTDYQAQTG 122

Query: 56  QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
           ++            ++ +       +       L   R +LK +G +++    +   ++ 
Sbjct: 123 EIGEDGFLKKAFRKNAKENGHFHSNWLNMMLPRLHLARNLLKDDGVIFISIDDNEQAQLK 182

Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
            +   +                   +G         L++A      K 
Sbjct: 183 LLCDEVFGEENFVAELIWDKQHSQQQGLFKTYHEYVLLYAKNINNHKN 230



 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 20/43 (46%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +    KP  +LS  +   T   DIILD F GSG++     +  
Sbjct: 375 VFNNPKPLPMLSDFIRWFTGRADIILDFFSGSGSTAHAILETN 417


>gi|261415697|ref|YP_003249380.1| Site-specific DNA-methyltransferase (adenine-specific) [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261372153|gb|ACX74898.1| Site-specific DNA-methyltransferase (adenine-specific) [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302326866|gb|ADL26067.1| putative type III restriction-modification system, Mod subunit
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 639

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 73/205 (35%), Gaps = 36/205 (17%)

Query: 24  IKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDA------------- 67
           I+G+++  L+ L       V +I+ DPPYN   N  +Y+ D  +  A             
Sbjct: 101 IEGDNLEALKLLQEGYLGKVKMIYIDPPYNTG-NDFIYKDDFRMDSAKYAEESGAVDDEG 159

Query: 68  -----VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL- 121
                 +DS  +F S   + +   + LL  R +L  +G +++    +    +  +   + 
Sbjct: 160 NRMVQNSDSNGRFHS--DWCSMIYSRLLLARNLLTDDGVIFISIDDNEQANLKKICDEVF 217

Query: 122 -NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
                + +++W+ +           Q+ ++ L ++        Y  + + L     +   
Sbjct: 218 GGSNFVANVIWKHT----------QQSKNDELHFSRQYNHTFVYAHDMNQLPRFYMERTA 267

Query: 181 RSDWLIPICSGSERLRNKDGEKLHP 205
             +          +   + G+   P
Sbjct: 268 EDNVNYSNPDNDPKGLWRSGDVRSP 292



 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 20/90 (22%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIE 252
           +G ++  T KP  L+  +L     P  I+LD F GS T+     +L       R FI ++
Sbjct: 380 NGIQVFDTPKPIELVQNMLALLRDPSGIVLDFFSGSATTAHAVMQLNAEDGGHRKFIMVQ 439

Query: 253 MKQD-----------Y---IDIATKRIASV 268
           + +            Y    +I  +RI   
Sbjct: 440 LPEKCDENSEAAKAGYKTICEIGKERIRRA 469


>gi|206889392|ref|YP_002248227.1| DNA methyltransferase C1 [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206741330|gb|ACI20387.1| DNA methyltransferase C1 [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 475

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 64/204 (31%), Gaps = 26/204 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY---------------NLQLNGQLYRPDHSLVD 66
           K+I G++ ++   +   S+DLI   PPY                L ++  L+R  H +  
Sbjct: 251 KVICGDARNL--SIENNSIDLIITSPPYVNALDYYRVHMYNMLWLGMDFDLFR-KHEIGG 307

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR--------IGTML 118
                 ++F     Y       ++   RVLK +    ++    ++             M 
Sbjct: 308 HSHFINNRFRLLSEYLGDMLRSMIEMNRVLKRDKFCVIVVGNSSLEYELIESHKFFTEMA 367

Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
           + + F  +  I                +   E ++      +   +  + + +    +++
Sbjct: 368 KKIGFIPIKTIFRNIDKTRKYTSADIGKIDEEYIVVMQKKEETHIFANDDNFVSQIVKEL 427

Query: 179 QMRSDWLIPICSGSERLRNKDGEK 202
            +     I    G+     K   +
Sbjct: 428 MLHFKEQIKNNPGTSTRGKKPSNE 451



 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 25/59 (42%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +P +    +    +   TK  + +LDP  G GT+   A    R+ IG ++      IA 
Sbjct: 66  YPARFIPQIPLTFIKLFTKERERVLDPMCGCGTTLVEAFLNDRNSIGNDLNPLAALIAK 124


>gi|109947857|ref|YP_665085.1| type II restriction-modification methyltransferase [Helicobacter
           acinonychis str. Sheeba]
 gi|109715078|emb|CAK00086.1| type II restriction-modification methyltransferase [Helicobacter
           acinonychis str. Sheeba]
          Length = 381

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 53/134 (39%), Gaps = 17/134 (12%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
             ++  L+++  +S+  I+ DPPYN + +   Y   H+                 Y+ + 
Sbjct: 1   MEALECLKRIEKESIQTIYIDPPYNTKSSNFEYEDTHA----------------DYEKWI 44

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
           +  L+  + VLK +G +++    + +  +  +   + F + N +    +        +  
Sbjct: 45  KEHLVLAKAVLKQSGCIFISIDDNQMAEVKIIANEI-FGVHNFLGTFITKQATRSNAKHI 103

Query: 146 QNAHETLIWASPSP 159
              HE ++  + + 
Sbjct: 104 NITHEYVLSYAKNK 117



 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 40/112 (35%), Gaps = 17/112 (15%)

Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
           +    LI+ +  P  K Y                 S        G+  L     + L  T
Sbjct: 230 HYENRLIFKNKRPYEKYY--------LKESQDNCLSVLDFYSRQGTRDLEKLGLKGLFKT 281

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            KP  L+  +L+ ST    +ILD F GSGT+             IE+ +DY 
Sbjct: 282 PKPVELIKYLLLCSTPKDSVILDFFAGSGTTAQAI---------IEVNKDYH 324


>gi|57242065|ref|ZP_00370005.1| type III restriction/modification enzyme, methylase subunit
           [Campylobacter upsaliensis RM3195]
 gi|57017257|gb|EAL54038.1| type III restriction/modification enzyme, methylase subunit
           [Campylobacter upsaliensis RM3195]
          Length = 455

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/198 (12%), Positives = 66/198 (33%), Gaps = 34/198 (17%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD--------------- 61
           ++ IIKG+++  L+ L       + +I+ DPPYN + +  +Y  +               
Sbjct: 94  QNIIIKGDNLHALKLLKSAYDGKIKMIYIDPPYNTKNDKFIYNDNFIKEYQKLLVELDLL 153

Query: 62  ----------HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
                      S V     +     +   + +F    L   R +LK +G +++    +  
Sbjct: 154 KLDSNGKVLEKSEVLHFLTNPSGDKAHSGWLSFMLPRLKLARDLLKDDGVIFISIDDNEQ 213

Query: 112 FRIGTMLQNLNFW------ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
             +  +   +         +  ++   +   + + +  +     E ++  +   +   + 
Sbjct: 214 ANLKILCDEIFGEDNFMANLCVELSTTQGMKVASAQKGQIVKNAEYILCYAKDNQNFKFE 273

Query: 166 FNYDALKAANEDVQMRSD 183
                 K  ++   +  D
Sbjct: 274 RPLYTAKEWDDHYSVYID 291


>gi|303252811|ref|ZP_07338970.1| type III restriction-modification system methyltransferase
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|307247797|ref|ZP_07529833.1| Type III restriction-modification system methyltransferase
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|302648241|gb|EFL78438.1| type III restriction-modification system methyltransferase
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|306855599|gb|EFM87766.1| Type III restriction-modification system methyltransferase
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
          Length = 615

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 52/168 (30%), Gaps = 21/168 (12%)

Query: 17  FEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN------------------G 55
            + ++  I+G ++ VL+ L      S+ +I+ DPPYN   +                  G
Sbjct: 63  EQTQNIFIEGENLEVLKALQKSYFNSIKMIYIDPPYNTGNDFVYNDNFAQNQTDYQAQTG 122

Query: 56  QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
           ++            ++ +       +       L   R +LK +G +++    +   ++ 
Sbjct: 123 EIGEDGFLKKAFRKNAKENGHFHSNWLNMMLPRLHLARNLLKDDGVIFISIDDNEQAQLK 182

Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
            +   +                   +G         L++A      K 
Sbjct: 183 LLCDEVFGEENFVAELIWDKQHSQQQGLFKTYHEYVLLYAKNINNHKN 230



 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 20/43 (46%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +    KP  +LS  +   T   DIILD F GSG++     +  
Sbjct: 375 VFNNPKPLPMLSDFIRWFTGRADIILDFFSGSGSTAHAILETN 417


>gi|109946647|ref|YP_663875.1| type III restriction-modification system methylation subunit
           fragment 1 [Helicobacter acinonychis str. Sheeba]
 gi|109713868|emb|CAJ98876.1| type III restriction-modification system methylation subunit
           fragment 1 [Helicobacter acinonychis str. Sheeba]
          Length = 463

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 28/47 (59%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +GEK+    KP  L++R++  ST  GDIILD F GSGT+     +  
Sbjct: 401 NGEKIFSYPKPLKLINRLIELSTNEGDIILDFFAGSGTTAHAVLESN 447



 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 65/169 (38%), Gaps = 21/169 (12%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHS--------LVDAV 68
           K  +IKG+++  L+ L    ++ + +I+ DPPYN + +  +Y  D S         +D  
Sbjct: 89  KHILIKGDNLDALKILRQSYSEKIKMIYIDPPYNTKNDNFIYSDDFSQSNEELLKQLDYS 148

Query: 69  TDSWDKFSSF------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL- 121
            +  D  ++         + +F    LL  + +LK +G +++    +   ++  +   + 
Sbjct: 149 KEKLDYINNLFGSKCHSGWLSFMYPRLLLAKDLLKKDGVIFISIDDNEAAQLKLLCDEIF 208

Query: 122 --NFWILNDIVWRKSNPMPNFRGRRFQN-AHETLIWASPSPKAKGYTFN 167
               ++   I   K+ P  N    +  +   E +              N
Sbjct: 209 GEGNFVAQFIWHSKNKPSGNTTEDKTIDTRTEYIFCYQKCNFKANKHEN 257


>gi|307261295|ref|ZP_07542970.1| Type III restriction-modification system methyltransferase
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|306869026|gb|EFN00828.1| Type III restriction-modification system methyltransferase
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
          Length = 449

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 52/168 (30%), Gaps = 21/168 (12%)

Query: 17  FEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN------------------G 55
            + ++  I+G ++ VL+ L      S+ +I+ DPPYN   +                  G
Sbjct: 63  EQTQNIFIEGENLEVLKALQKSYFNSIKMIYIDPPYNTGNDFVYNDNFAQNQTDYQAQTG 122

Query: 56  QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
           ++            ++ +       +       L   R +LK +G +++    +   ++ 
Sbjct: 123 EIGEDGFLKKAFRKNAKENGHFHSNWLNMMLPRLHLARNLLKDDGVIFISIDDNEQAQLK 182

Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
            +   +                   +G         L++A      K 
Sbjct: 183 LLCDEVFGEENFVAELIWDKQHSQQQGLFKTYHEYVLLYAKNINNHKN 230



 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 20/43 (46%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +    KP  +LS  +   T   DIILD F GSG++     +  
Sbjct: 375 VFNNPKPLPMLSDFIRWFTGRADIILDFFSGSGSTAHAILETN 417


>gi|265762622|ref|ZP_06091190.1| type III DNA modification enzyme [Bacteroides sp. 2_1_16]
 gi|263255230|gb|EEZ26576.1| type III DNA modification enzyme [Bacteroides sp. 2_1_16]
          Length = 659

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 59/163 (36%), Gaps = 23/163 (14%)

Query: 24  IKGNSISVLEKLP---AKSVDLIFADPPYNLQLN-----------------GQLYRPDHS 63
           I+G+++  ++ L    A  VD+I+ DPPYN   +                    Y  +  
Sbjct: 102 IEGDNLDAMKLLKKSYAGKVDVIYIDPPYNTGKDFIFNDTFALSQEESDEKQGRYNEEGQ 161

Query: 64  LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
            +   T++  KF S   + +   A L+  R +L  NG +++    H +  +  +   +  
Sbjct: 162 RLFQNTEANGKFHS--DWCSMMYARLMLARTLLNDNGIIFISIDDHELANLIKIGNEVFN 219

Query: 124 WILNDIVWRKSNP-MPNFRGRRFQNAHETLIWASPSPKAKGYT 165
                 V+  +    P    ++ +   E ++          + 
Sbjct: 220 ASNFIDVFNWAKTETPENLSKKSKQIIEYIVCYQKKKNDMKFQ 262



 Score = 43.4 bits (101), Expect = 0.056,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 9/72 (12%)

Query: 201 EKLHPTQKPEALLSRILV--SSTKPGDIILDPFFGSGTSGAVAKKLR---R----SFIGI 251
           +K+    KP +L+  +     +     I++D F GSGT+     ++    R     +I +
Sbjct: 399 KKVFNFPKPVSLIQYLCEFIDTKNKDCIVMDFFSGSGTTAEAVMRMNMKPRKNKVKYILV 458

Query: 252 EMKQDYIDIATK 263
           ++ +D  +   K
Sbjct: 459 QLPEDVTETIKK 470


>gi|253563533|ref|ZP_04840990.1| type III DNA modification enzyme [Bacteroides sp. 3_2_5]
 gi|251947309|gb|EES87591.1| type III DNA modification enzyme [Bacteroides sp. 3_2_5]
          Length = 664

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 59/163 (36%), Gaps = 23/163 (14%)

Query: 24  IKGNSISVLEKLP---AKSVDLIFADPPYNLQLN-----------------GQLYRPDHS 63
           I+G+++  ++ L    A  VD+I+ DPPYN   +                    Y  +  
Sbjct: 107 IEGDNLDAMKLLKKSYAGKVDVIYIDPPYNTGKDFIFNDTFALSQEESDEKQGRYNEEGQ 166

Query: 64  LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
            +   T++  KF S   + +   A L+  R +L  NG +++    H +  +  +   +  
Sbjct: 167 RLFQNTEANGKFHS--DWCSMMYARLMLARTLLNDNGIIFISIDDHELANLIKIGNEVFN 224

Query: 124 WILNDIVWRKSNP-MPNFRGRRFQNAHETLIWASPSPKAKGYT 165
                 V+  +    P    ++ +   E ++          + 
Sbjct: 225 ASNFIDVFNWAKTETPENLSKKSKQIIEYIVCYQKKKNDMKFQ 267



 Score = 43.4 bits (101), Expect = 0.060,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 9/72 (12%)

Query: 201 EKLHPTQKPEALLSRILV--SSTKPGDIILDPFFGSGTSGAVAKKLR---R----SFIGI 251
           +K+    KP +L+  +     +     I++D F GSGT+     ++    R     +I +
Sbjct: 404 KKVFNFPKPVSLIQYLCEFIDTKNKDCIVMDFFSGSGTTAEAVMRMNMKPRKNKVKYILV 463

Query: 252 EMKQDYIDIATK 263
           ++ +D  +   K
Sbjct: 464 QLPEDVTETIKK 475


>gi|60680597|ref|YP_210741.1| putative modification enzyme of type III restriction-modification
           system [Bacteroides fragilis NCTC 9343]
 gi|60492031|emb|CAH06793.1| putative modification enzyme of type III restriction-modification
           system [Bacteroides fragilis NCTC 9343]
 gi|301162140|emb|CBW21685.1| putative modification enzyme of type III restriction-modification
           system [Bacteroides fragilis 638R]
          Length = 664

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 59/163 (36%), Gaps = 23/163 (14%)

Query: 24  IKGNSISVLEKLP---AKSVDLIFADPPYNLQLN-----------------GQLYRPDHS 63
           I+G+++  ++ L    A  VD+I+ DPPYN   +                    Y  +  
Sbjct: 107 IEGDNLDAMKLLKKSYAGKVDVIYIDPPYNTGKDFIFNDTFALSQEESDEKQGRYNEEGQ 166

Query: 64  LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
            +   T++  KF S   + +   A L+  R +L  NG +++    H +  +  +   +  
Sbjct: 167 RLFQNTEANGKFHS--DWCSMMYARLMLARTLLNDNGIIFISIDDHELANLIKIGNEVFN 224

Query: 124 WILNDIVWRKSNP-MPNFRGRRFQNAHETLIWASPSPKAKGYT 165
                 V+  +    P    ++ +   E ++          + 
Sbjct: 225 ASNFIDVFNWAKTETPENLSKKSKQIIEYIVCYQKKKNDMKFQ 267



 Score = 43.4 bits (101), Expect = 0.060,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 9/72 (12%)

Query: 201 EKLHPTQKPEALLSRILV--SSTKPGDIILDPFFGSGTSGAVAKKLR---R----SFIGI 251
           +K+    KP +L+  +     +     I++D F GSGT+     ++    R     +I +
Sbjct: 404 KKVFNFPKPVSLIQYLCEFIDTKNKDCIVMDFFSGSGTTAEAVMRMNMKPRKNKVKYILV 463

Query: 252 EMKQDYIDIATK 263
           ++ +D  +   K
Sbjct: 464 QLPEDVTETIKK 475


>gi|53712435|ref|YP_098427.1| type III DNA modification enzyme [Bacteroides fragilis YCH46]
 gi|52215300|dbj|BAD47893.1| type III DNA modification enzyme [Bacteroides fragilis YCH46]
          Length = 668

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 59/163 (36%), Gaps = 23/163 (14%)

Query: 24  IKGNSISVLEKLP---AKSVDLIFADPPYNLQLN-----------------GQLYRPDHS 63
           I+G+++  ++ L    A  VD+I+ DPPYN   +                    Y  +  
Sbjct: 111 IEGDNLDAMKLLKKSYAGKVDVIYIDPPYNTGKDFIFNDTFALSQEESDEKQGRYNEEGQ 170

Query: 64  LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
            +   T++  KF S   + +   A L+  R +L  NG +++    H +  +  +   +  
Sbjct: 171 RLFQNTEANGKFHS--DWCSMMYARLMLARTLLNDNGIIFISIDDHELANLIKIGNEVFN 228

Query: 124 WILNDIVWRKSNP-MPNFRGRRFQNAHETLIWASPSPKAKGYT 165
                 V+  +    P    ++ +   E ++          + 
Sbjct: 229 ASNFIDVFNWAKTETPENLSKKSKQIIEYIVCYQKKKNDMKFQ 271



 Score = 43.4 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 9/72 (12%)

Query: 201 EKLHPTQKPEALLSRILV--SSTKPGDIILDPFFGSGTSGAVAKKLR---R----SFIGI 251
           +K+    KP +L+  +     +     I++D F GSGT+     ++    R     +I +
Sbjct: 408 KKVFNFPKPVSLIQYLCEFIDTKNKDCIVMDFFSGSGTTAEAVMRMNMKPRKNKVKYILV 467

Query: 252 EMKQDYIDIATK 263
           ++ +D  +   K
Sbjct: 468 QLPEDVTETIKK 479


>gi|34762302|ref|ZP_00143306.1| TYPE III RESTRICTION-MODIFICATION SYSTEM METHYLATION SUBUNIT
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|27888024|gb|EAA25087.1| TYPE III RESTRICTION-MODIFICATION SYSTEM METHYLATION SUBUNIT
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
          Length = 524

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 58/184 (31%), Gaps = 21/184 (11%)

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
             + +    +   RF+   E   +       +   ++    +   +  +   D       
Sbjct: 209 VNEEDGRWIWGKERFEEMKEKFTYYDGETIYRKLYYDETEDQNVYQVEKAWFDSFTNAQG 268

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGSGTSGAVAKKL----- 244
             E       +K+    KP  L+  ++  S K    +ILD F GS T+     +L     
Sbjct: 269 TKEFDELFKKKKIFSHPKPIDLIKLLINLSNKENSFLILDFFSGSATTAHSVMQLNAEDG 328

Query: 245 -RRSFIGI-------EMKQDY-------IDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
             R +I +       E  + Y        +I  +RI         + ++    R +  + 
Sbjct: 329 GNRKYIMVQLPELCDESSEAYKAGYKNICEIGKERIRRAGEKIKSDESLPLENREKLDIG 388

Query: 290 FNLL 293
           F + 
Sbjct: 389 FKIF 392



 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/95 (10%), Positives = 27/95 (28%), Gaps = 15/95 (15%)

Query: 42  LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF---------------SSFEAYDAFTR 86
           +I+ DPPYN   +          ++   +   +                     +     
Sbjct: 1   MIYIDPPYNTGKDFVYKDNFTDNIENYKEITGQINKEGIKLTTNTETNGRYHSDWLNMMY 60

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
             L   R +L  +G +++    +    +  +   +
Sbjct: 61  PRLKLARNLLTDDGVIFISIDDNEQANLKKICDEI 95


>gi|297243075|ref|ZP_06927013.1| Adenine specific DNA methylase Mod [Gardnerella vaginalis AMD]
 gi|296889286|gb|EFH28020.1| Adenine specific DNA methylase Mod [Gardnerella vaginalis AMD]
          Length = 699

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 50/139 (35%), Gaps = 9/139 (6%)

Query: 21  DKIIKGN---SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
             +I+ +   ++ +LE L    VD I+ DPPYN          D    +   DS D +  
Sbjct: 127 HTLIEADNYHALQLLEYLYEGQVDCIYIDPPYNTGAK------DWKYNNDYVDSSDAYRH 180

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            +      +   LA + +   +  L V         +G +L+ L       +V    NP 
Sbjct: 181 SKWLSMMEKRLKLAKKLLNPADSVLIVTIDEKEYLHLGCLLEELFPDARMQMVSSVINPA 240

Query: 138 PNFRGRRFQNAHETLIWAS 156
            + R   F    E + +  
Sbjct: 241 GSSRQNEFSRTDEFIFFIK 259



 Score = 41.5 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 56/171 (32%), Gaps = 18/171 (10%)

Query: 101 TLWVIGSY--HNIFRIGT-MLQNL--NFWILNDIVWRKSNP---MPNFRGRRFQNAHETL 152
           T+W I S      +R+G   LQ L  N ++   I          +P    ++ +N   T+
Sbjct: 344 TIWPILSDGKEGRWRVGHEKLQELLDNHYVRVGIPRGDKTSLSYVPEGARKKIENGEYTI 403

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
           +             N+ A         + S        G++ +    G+      K    
Sbjct: 404 LGYRSDGSIITDDENHVAKFLPGTQWWINS--HNATQFGTKLINQMVGKSRFDFPKSLYA 461

Query: 213 LSRILVSST--KPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
           +   +      KP  +ILD F GSGT+      L       R  I +   +
Sbjct: 462 VHDAIRFFVANKPNALILDFFAGSGTTLHAVNLLNAEDGGHRRCIMVTNNE 512


>gi|110632903|ref|YP_673111.1| DNA methylase N-4/N-6 [Mesorhizobium sp. BNC1]
 gi|110283887|gb|ABG61946.1| DNA methylase N-4/N-6 [Chelativorans sp. BNC1]
          Length = 657

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 73/205 (35%), Gaps = 34/205 (16%)

Query: 20  KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN-----------------GQLYR 59
           K+  I+G+++  L+ +       + LI+ DPPYN   +                      
Sbjct: 99  KNLFIEGDNLQALKLIQDTYLGQIKLIYVDPPYNTGKDFIYRDSFASDQNTHEIASGERS 158

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
            + + + A ++   +F S   +       L   + +LK +G ++V        R+  ++ 
Sbjct: 159 EEGARLVANSEGNGRFHSN--WLTMIAPRLRLAKNLLKRDGAIFVSCDEGEQPRLRLIMD 216

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQN-AHETLIWASPSPKAKGYTFNYDALKAANEDV 178
            +  +  ++ V             R  + +HE ++          Y  + + L+      
Sbjct: 217 EI--FGQSNFVADMVWAAGRKNDSRLVSVSHEYIV---------CYARDSEYLRENQVIW 265

Query: 179 QMRSDWLIPICSGSERLRNKDGEKL 203
           + R   L  I +  ERL+ + G   
Sbjct: 266 RQRKKGLDEIYAQYERLKRQHGNDF 290



 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 71/227 (31%), Gaps = 18/227 (7%)

Query: 51  LQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD-AFTRAWLLACRRVLKPNGTLWVIGSYH 109
           L+ N  ++R     +D +   +++       D       +    R L  +        Y 
Sbjct: 258 LRENQVIWRQRKKGLDEIYAQYERLKRQHGNDFKAMTEGMKEWYRSLADSHPSKAHKHYA 317

Query: 110 NIFRIGTMLQNLNFW------ILNDIVWRKSNPM-PNFRGRRFQNAHETLIWASPSPKAK 162
           ++   G    +   W          +  R   P+    RG    +      W        
Sbjct: 318 HVDVRGVYFPDNISWPGGGGPKYEVLHPRTKRPVKVPSRGWMTSDPKRMQEWIDDDRVHF 377

Query: 163 GYTFNYDALKAAN----EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILV 218
           G   N      +     E     S +     + S+RLR   G  L    K E +L  ++ 
Sbjct: 378 GDDENSVPCIKSYLKDKEVQTPYSVFYQDGRAASKRLRALMGGDLFDFPKDELVLQEVIE 437

Query: 219 SSTKPGDIILDPFFGSGTSGA------VAKKLRRSFIGIEMKQDYID 259
             T+  DIILD F GS T+              R FI +++ +   +
Sbjct: 438 MMTEGSDIILDFFAGSSTTAHSVMLQNAKDGANRKFIMVQLDEAAAE 484


>gi|332982816|ref|YP_004464257.1| adenine-specific DNA-methyltransferase [Mahella australiensis 50-1
           BON]
 gi|332700494|gb|AEE97435.1| Site-specific DNA-methyltransferase (adenine-specific) [Mahella
           australiensis 50-1 BON]
          Length = 644

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 84/229 (36%), Gaps = 28/229 (12%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLY 58
             +   +  EN NS   +    I G+++  L+ L    ++ V  I+ DPPYN   +G +Y
Sbjct: 83  PDEEHNSKPENMNSENIY----ISGDNLDGLKHLLKSYSRQVKCIYIDPPYNTGTDGFVY 138

Query: 59  RPDHS-----LVDAVTDSWDK-----------FSSFEAYDAFTRAWLLACRRVLKPNGTL 102
               +     L + ++ S ++            +S  A+  F    LL  R +LK +G +
Sbjct: 139 NDQFNFTVEELSEKLSISEEQAQRILDLTKRGSASHSAWLMFMYPRLLLARDLLKDDGVV 198

Query: 103 WVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLI-WASPSP 159
           ++    +    +  +  ++         I WR+ +  PN + +      E ++ ++    
Sbjct: 199 FISIDDNEQANLRLICDDVFGEENFEGHIHWRRRHNQPNDKTKLIGIVAEHILVYSRNCQ 258

Query: 160 KAKGYTFNYDA--LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
             K       A   + +N D   R DW                  + PT
Sbjct: 259 YLKDVGVGKVALTGEFSNPDNDPRGDWASKPWKAGSDQSGTRYTIITPT 307



 Score = 44.2 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 5/101 (4%)

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
            P+ K +     A      +  +  ++     +  E       +      KP  L+  I+
Sbjct: 340 MPRKKYFKTERQAEGQCATNWWIHENYGSNQKASDELTELFGFKNAFSNPKPTQLIDAII 399

Query: 218 -VSSTKPGDIILDPFFGSGTSGAVAKKL----RRSFIGIEM 253
            +++ K GDIILD F GS T+   A +     +  FI I++
Sbjct: 400 SLANVKDGDIILDFFSGSATTAHSALQFSLGYKCKFIMIQL 440


>gi|297530433|ref|YP_003671708.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           sp. C56-T3]
 gi|297253685|gb|ADI27131.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           sp. C56-T3]
          Length = 633

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 44/110 (40%), Gaps = 12/110 (10%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQLN---GQLYRPDHSLVDAVTDSWDKFSS 77
           I+G+++ VL+ L       + +I+ DPPYN   +      +R +      +T    K ++
Sbjct: 92  IEGDNLEVLKLLQKSYFGKIKMIYIDPPYNTGKDFVYKDDFRDNIKNYKEITQQTTKANT 151

Query: 78  ------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
                    +       L   R +L+ +G +++    + +  +  +   +
Sbjct: 152 ETNGRYHTDWLNMMYPRLKLARNLLREDGVIFISIDDNEVANLRKVCDEI 201



 Score = 42.7 bits (99), Expect = 0.086,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 10/69 (14%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSST--KPGDIILDPFFGSGTSGAVAKKLR------R 246
           L  ++G   +P  KP +L+  ++ +        I+LD F GS  +      L       R
Sbjct: 381 LFGEEGVVSYP--KPVSLVKYLINTLGYYDKEMIVLDFFAGSAATAEAVMTLNAQDDGSR 438

Query: 247 SFIGIEMKQ 255
            FI +++ +
Sbjct: 439 KFIMVQLDE 447


>gi|124514975|gb|EAY56486.1| putative DNA methylase N-4/N-6 [Leptospirillum rubarum]
          Length = 452

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 52/138 (37%), Gaps = 9/138 (6%)

Query: 24  IKGNSISVLEKLPAK---SVDLIFADPPYNLQ----LNGQLYRPDHSLVDAVTDSWDKFS 76
           ++G+++ +L  L  +   ++  I+ DPPYN         +  R       A  D+  +  
Sbjct: 69  LEGDNLHILRLLKKEYAGAIGAIYIDPPYNTGTTMRYFDRFSRRGGPSGLAGGDTGSR-R 127

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSN 135
               + +F    L+  R +L+ +G L+V     +I  +  +L  +         V  +  
Sbjct: 128 DDSPWLSFLYPRLILARELLREDGALFVSIDDRSIHHLRYLLDEIFGPDNHAGTVVWRKK 187

Query: 136 PMPNFRGRRFQNAHETLI 153
            +     R      E ++
Sbjct: 188 VVRGRGHRHIIPQTEYVV 205



 Score = 40.0 bits (92), Expect = 0.65,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 49/149 (32%), Gaps = 25/149 (16%)

Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
           ++ + ETL+      +          +          S       S  +R+   DG +  
Sbjct: 275 WRWSKETLMARKSELEFVKNRMGKWVVYTRQRLYPDGSLRRKTPVSFYDRVSTSDGTREF 334

Query: 205 PT---------QKPEALLSRILVSSTKPGD-----IILDPFFGSGTSGAVAKKLR----- 245
            T          KP  L+  +L     P D     I+LD F G+  +     +L      
Sbjct: 335 RTLCQGALFDFPKPSRLIKDLLGWVPLPVDSQEPLIVLDFFAGTCPTAQAVLELNQSDNG 394

Query: 246 -RSFIGI-----EMKQDYIDIATKRIASV 268
            R FI +     E + D   +  KRI SV
Sbjct: 395 HRKFIMVQDTPAEGQTDIAALGHKRIQSV 423


>gi|120610429|ref|YP_970107.1| DNA methylase N-4/N-6 domain-containing protein [Acidovorax
           citrulli AAC00-1]
 gi|120588893|gb|ABM32333.1| DNA methylase N-4/N-6 domain protein [Acidovorax citrulli AAC00-1]
          Length = 835

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 25/57 (43%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           + H       ++ R +   +  G+ + DPF G GT G  A KL R   G E+   Y 
Sbjct: 754 EKHICPLQFDIVDRAIERWSMRGEKVYDPFHGLGTVGVRAIKLGRRAGGSELNPGYF 810



 Score = 42.3 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 10/75 (13%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
             + +    + P  SVDLI    P+           D    +     W++         F
Sbjct: 481 HNDCVLEAREQPENSVDLIVTSIPFANHYEYSPSYNDFGHTEGNAHFWEQM-------DF 533

Query: 85  TRAWLLACRRVLKPN 99
                    R+LKP 
Sbjct: 534 LTP---ELYRILKPG 545


>gi|325990121|ref|YP_004249820.1| DNA methylase [Mycoplasma suis KI3806]
 gi|323575206|emb|CBZ40871.1| DNA methylase [Mycoplasma suis]
          Length = 253

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 5/97 (5%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
            +      N +++  + W  P          K      P      +   IL+  +  GD+
Sbjct: 7   KFTKWGPDNFELETSTIWNFPNRGKWATHDAKYRGNWSPY-----IPRNILLRYSSEGDL 61

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +LD F G GT+   AK L R+ IG+++ ++ +    +
Sbjct: 62  VLDQFAGGGTTLVEAKLLNRNIIGVDVNEESLKRCRE 98



 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 57/160 (35%), Gaps = 22/160 (13%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
            +K S   N  +  +     +I+KG++   L  + ++S+DLI   PPY   ++    +  
Sbjct: 97  REKTSFEFNGPKGQV-----EIVKGDARD-LNFIKSESIDLICTHPPYANIIHYSEGQVI 150

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV-IGSYHNI-------FR 113
              +  +            +    +     C RVLK N    + +G            F 
Sbjct: 151 EEDLSNLK--------VSEFLEEMKKVAQECCRVLKKNKYCVILMGDTRKNGHMIPLSFD 202

Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           +  + +++ F +   I+  + N       +     H  L+
Sbjct: 203 VMKLFEDVGFKLKELIIKAQHNCKATGFWKTNSVKHNFLL 242


>gi|120610367|ref|YP_970045.1| DNA methylase N-4/N-6 domain-containing protein [Acidovorax
           citrulli AAC00-1]
 gi|120588831|gb|ABM32271.1| DNA methylase N-4/N-6 domain protein [Acidovorax citrulli AAC00-1]
          Length = 835

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 25/57 (43%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           + H       ++ R +   +  G+ + DPF G GT G  A KL R   G E+   Y 
Sbjct: 754 EKHICPLQFDIVDRAIERWSMRGEKVYDPFHGLGTVGVRAIKLGRRAGGSELNPGYF 810



 Score = 42.3 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 10/99 (10%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           M +  +  I   +  +     ++   + +    + P  SVDLI    P+           
Sbjct: 457 MHETLARTIGVKRRVVKSDLFEVAHNDCVLEAREQPENSVDLIVTSIPFANHYEYSPSYN 516

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99
           D    +     W++         F         R+LKP 
Sbjct: 517 DFGHTEGNAHFWEQM-------DFLTP---ELYRILKPG 545


>gi|303251379|ref|ZP_07337557.1| type III restriction-modification system methyltransferase
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|302649921|gb|EFL80099.1| type III restriction-modification system methyltransferase
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
          Length = 407

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 52/168 (30%), Gaps = 21/168 (12%)

Query: 17  FEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN------------------G 55
            + ++  I+G ++ VL+ L      S+ +I+ DPPYN   +                  G
Sbjct: 63  EQTQNIFIEGENLEVLKALQKSYFNSIKMIYIDPPYNTGNDFVYNDNFAQNQTDYQAQTG 122

Query: 56  QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
           ++            ++ +       +       L   R +LK +G +++    +   ++ 
Sbjct: 123 EIGEDGFLKKAFRKNAKENGHFHSNWLNMMLPRLHLARNLLKDDGVIFISIDDNEQAQLK 182

Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
            +   +                   +G         L++A      K 
Sbjct: 183 LLCDEVFGEENFVAELIWDKQHSQQQGLFKTYHEYVLLYAKNINNHKN 230



 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 17/33 (51%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
           +    KP  +LS  +   T   DIILD F GSG
Sbjct: 375 VFNNPKPLPMLSDFIRWFTGRADIILDFFSGSG 407


>gi|187736011|ref|YP_001878123.1| DNA methylase N-4/N-6 domain protein [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187426063|gb|ACD05342.1| DNA methylase N-4/N-6 domain protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 632

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 53/161 (32%), Gaps = 23/161 (14%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQLN---GQLYRPDHSLVDAVTDSWDKFSS 77
           I+G+++ VL+ L       V +I+ DPPYN   +      +    S  +  +  +D+  +
Sbjct: 102 IEGDNLDVLKVLRETYLGKVKMIYIDPPYNTGNDFVYNDEFAQGKSEFEQNSGLFDEEGN 161

Query: 78  ----------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
                              +       L   R +L  +G +++    + I  +  +   +
Sbjct: 162 QTIDPMLRNTESNGRFHTDWLNMIYPRLKVARDLLSEDGVIFISIDNNEIENLRKICDEI 221

Query: 122 NFWILNDIVWRKSNPMPNFRG-RRFQNAHETLIWASPSPKA 161
                    +   N      G       HE ++  S +P  
Sbjct: 222 FSESNCICQFVWKNKYGAGGGTNSVAYVHEYILAYSKTPIV 262



 Score = 42.7 bits (99), Expect = 0.098,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 23/104 (22%)

Query: 201 EKLHPTQKPEALLSRILVSSTK---PGDIILDPFFGSGTSGAVAKKL------RRSFIGI 251
           +++    KP  L+  +L  +         I+D F GS ++     KL       R FI +
Sbjct: 392 KRIFDFPKPSDLIKFLLSLNINGGTTDFTIIDFFSGSSSTAHAVMKLNAEDGGNRKFIMV 451

Query: 252 -------EMKQDY-------IDIATKRIASVQPLGNIELTVLTG 281
                  E  + Y        +I  +RI         E     G
Sbjct: 452 QLPELTDEKSEAYKAGYKNICEIGKERIRRAGKKIKEENADKEG 495


>gi|222150484|ref|YP_002559637.1| type III restriction-modification system methyltransferase subunit
           [Macrococcus caseolyticus JCSC5402]
 gi|222119606|dbj|BAH16941.1| type III restriction-modification system methyltransferase subunit
           [Macrococcus caseolyticus JCSC5402]
          Length = 625

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 62/176 (35%), Gaps = 23/176 (13%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY 58
                 +  EN+NS   +    I G++I  L+ L       +  I+ DPPYN   +G +Y
Sbjct: 81  PDIEHNSKEENRNSENLY----IVGDNIDALKHLLNSYAGRIKCIYIDPPYNTGSDGFVY 136

Query: 59  RPDHSLVDAVTDSWDKFSSFE--------------AYDAFTRAWLLACRRVLKPNGTLWV 104
             +         +    +  E              A+  F    LL  R +L  NG +++
Sbjct: 137 PDNFQFNSEELSNRIGITEEEAKRILDLAGKSTHSAWLTFMYPRLLLARDLLSKNGVIFI 196

Query: 105 IGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
               +    +  +   +         + WR+ +  PN R +      E ++  + +
Sbjct: 197 SIDDNEQGNLRLICDEIFGEENFEGHVHWRRRSNQPNDRSKMIGLVAEHILIYAKN 252



 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 16/126 (12%)

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN--KDGEKLHPTQKPEALLSR 215
            P+ K +    +       +    ++       GS RL +  +  + L    KP  L+  
Sbjct: 336 WPRKKIFKEERELEGQCANNWWNHTE-FGSNQKGSARLTDLFEGNQNLFSKPKPTELIEG 394

Query: 216 ILVSSTKPGD-IILDPFFGSGTSGAVAKKLR------RSFIG------IEMKQDYIDIAT 262
           IL  +T   D  ILD F GS T+     +L       R ++       IE  +    +  
Sbjct: 395 ILNVTTTDDDFYILDFFSGSATTADAVMQLNAEDQGKRKYLMVQLPESIEKNKPAYKLGY 454

Query: 263 KRIASV 268
           K +  V
Sbjct: 455 KTLDEV 460


>gi|302870553|ref|YP_003839190.1| DNA methylase N-4/N-6 domain-containing protein [Micromonospora
           aurantiaca ATCC 27029]
 gi|302573412|gb|ADL49614.1| DNA methylase N-4/N-6 domain protein [Micromonospora aurantiaca
           ATCC 27029]
          Length = 334

 Score = 55.4 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 2/92 (2%)

Query: 183 DWLIPICSGSERLRNK--DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
            W     +G  + R +       HP +   A+ +  + + T+PGD++LDP  G GT+   
Sbjct: 53  VWATAQSTGPVQRRGRYVPESVKHPARMLPAIAAHAIAAYTQPGDLVLDPMCGIGTTLVE 112

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
           A    R   GIE +  + +IA   I      G
Sbjct: 113 AVHAGRDAFGIEYEPQWSNIADANIRHAHDQG 144



 Score = 41.9 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 10/91 (10%)

Query: 23  IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSF 78
           +I+G++  ++  +P      V L+   PPY   ++G +   +H +V       D +    
Sbjct: 151 VIRGDATRLMSLVPKALTGQVALVVTSPPYGPTVHGLVRPGEHGVVKYDDRYNDGEDRGN 210

Query: 79  EAYDAFT------RAWLLACRRVLKPNGTLW 103
            AY   T         L  C  +L+P G + 
Sbjct: 211 LAYRDLTGLADGFAQILAGCAALLRPGGVVV 241


>gi|325527107|gb|EGD04521.1| DNA methylase n-4/n-6 domain protein [Burkholderia sp. TJI49]
          Length = 100

 Score = 55.4 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%)

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
              +   + S   PG  I+DPF G GT+   A +     +G+E+    +  A +R+A  
Sbjct: 37  VEQMVPFIGSHATPGGWIVDPFCGFGTTLVAAARCGVPALGVEVDAQRVRFARERLARA 95


>gi|317153366|ref|YP_004121414.1| DNA methylase N-4/N-6 domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316943617|gb|ADU62668.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 934

 Score = 55.4 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 36/90 (40%)

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
            P+P    +   ++ALK    D                +         +PT+ P   + R
Sbjct: 75  CPNPWIGHFIAEWEALKPKKPDNYSYHREPFAADVSEGKYDPIYKYHPYPTKVPHKAIMR 134

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
            ++  TKPGDI+ D F G+G +G  A+   
Sbjct: 135 YILHYTKPGDIVFDGFCGTGMTGVAAQMCG 164



 Score = 39.6 bits (91), Expect = 0.90,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 8/78 (10%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQLNG--------QLYRPDHSLVDAVTDSWDKFSSFEAY 81
           S L  +P  S+  IF DPP+   L             R   +  +   ++  +    + Y
Sbjct: 494 SWLPSIPDNSLSYIFIDPPFGANLYYSELAFLWETWLRILTNNKEEAIENDAQGKGLDDY 553

Query: 82  DAFTRAWLLACRRVLKPN 99
               +       R LKP 
Sbjct: 554 RLLMQKCFSEAYRALKPG 571


>gi|227875014|ref|ZP_03993160.1| site-specific DNA-methyltransferase (adenine-specific) [Mobiluncus
           mulieris ATCC 35243]
 gi|227844402|gb|EEJ54565.1| site-specific DNA-methyltransferase (adenine-specific) [Mobiluncus
           mulieris ATCC 35243]
          Length = 645

 Score = 55.4 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 62/159 (38%), Gaps = 14/159 (8%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           ++  F+  +  I+G+++ VL+ L       V +I+ DPPYN   +   +    + ++   
Sbjct: 90  KDGSFDSDNIYIEGDNLEVLKLLQRGYHGKVKMIYIDPPYNTGHDFVYHDSFGNTIENYK 149

Query: 70  DSWD---------KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           +                   + +     L   R +L  +G +++  S   + R+ TM  +
Sbjct: 150 EQAGLAGQSNAETSGRYHSDWCSMMYPRLKLARELLSDDGVIFISISNVELSRLITMCSD 209

Query: 121 LNFW--ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
           +      ++  +W K+      +   + NA   + +A  
Sbjct: 210 IYGESNFIDLFIWEKTQHFGRQKLNSYSNADYIVCFAKK 248



 Score = 45.0 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 70/228 (30%), Gaps = 34/228 (14%)

Query: 103 WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
             I    N        ++      N+ V R+ +    F  +  + A   +     +    
Sbjct: 311 VKIIDSRNENEFRLRFRS---RWSNETVQRELDKGTTFWVKTDKFAIRAIYGTGKTANES 367

Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK 222
                +              D +    + S+ ++N  G       KP +L+  ++     
Sbjct: 368 PRQIIFTNTSNPKATFNRFGDRIDTSENASKEVQNLIGNA-FSYPKPVSLIKYLISLLWT 426

Query: 223 PGD-----IILDPFFGSGTSGAVAKKLR----------------------RSFIGIEMKQ 255
            GD     +++D F GSGT+      +                       R     ++ +
Sbjct: 427 DGDFDDNPLVMDFFSGSGTTAQAVMDINLYATNGNARFTLVQLPEKAAEDRR-TLCDIGE 485

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFN--LLVERGLIQP 301
           + I  A  +I S     N +L +    +  P + F    L + G+ +P
Sbjct: 486 ERIRRAGDKIKSDLDESNRQLMLGEEPKQLPDIGFRVFTLDDSGIEKP 533


>gi|296184979|ref|ZP_06853390.1| DNA (cytosine-5-)-methyltransferase [Clostridium carboxidivorans
           P7]
 gi|296050761|gb|EFG90184.1| DNA (cytosine-5-)-methyltransferase [Clostridium carboxidivorans
           P7]
          Length = 650

 Score = 55.4 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 48/117 (41%), Gaps = 20/117 (17%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHS--------LVDAVTDSW 72
           I+G+++ VL+ L       + +I+ DPPYN   N  +Y+ D+         +   V D  
Sbjct: 114 IEGDNLEVLKLLQKSYQNKIKMIYIDPPYNTG-NDFVYKDDYKDNLQNYFEVTGQVDDDG 172

Query: 73  DKFSSFEA--------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
           +K S+           +       L   R +LK +G +++    +    +  +  ++
Sbjct: 173 NKTSTNSESSGRYHTNWLNMMYPRLRLARNLLKDDGVIFISIDDNEFGNLKKVCDDI 229



 Score = 43.8 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 14/84 (16%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTK--PGDIILDPFFGSGTSGAV-----AKKLR-RSFIG 250
           DG K+    KP   + R++  S      DIILD F GS ++        A  L  R FI 
Sbjct: 404 DGIKVFDYSKPIDFIQRLICISPNANNEDIILDFFSGSASTANAVMSINADDLGKRRFIM 463

Query: 251 IEM------KQDYIDIATKRIASV 268
           I++        +      K I  +
Sbjct: 464 IQLPEQTDENSEACKAGYKNICEI 487


>gi|218780078|ref|YP_002431396.1| hypothetical protein Dalk_2235 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218761462|gb|ACL03928.1| hypothetical protein Dalk_2235 [Desulfatibacillum alkenivorans
           AK-01]
          Length = 407

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           W  P            G+K +    P  ++  +L   T P D+++DP  GSGT+  VA+ 
Sbjct: 14  WEYP---SQHYGDGNQGDKNYIGATPSWIIWNLLQRYTNPKDLVVDPMAGSGTTLDVARD 70

Query: 244 LRRSFIGIEMKQDYIDIAT 262
           + R  +G +++    DI  
Sbjct: 71  ISRRALGYDLQPTRKDIFR 89



 Score = 39.6 bits (91), Expect = 0.84,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 61/203 (30%), Gaps = 33/203 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE-AY 81
           I + ++  +   L  +  D +F DPPY+  +              + D   + S+ E  Y
Sbjct: 87  IFRSDARKL--PLENEKADFVFIDPPYSTHVKY----------SGLPDCIGELSANEPDY 134

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN---------DIVWR 132
                  +    R+L+P+  + +  S    F        + F +           DI+  
Sbjct: 135 YKAMEIVIKEINRILRPDRYMALYVSD--SFEKDKAFNAIGFELFKRMQKYFDPVDIICV 192

Query: 133 KSNPMPNFRGRRFQNAHE---------TLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
             +     +      A E          L       K+K     +   +   ++V+   +
Sbjct: 193 VRHNAKLKKNNWHAAAAEGNFFLRGFNYLFIMHKPLKSKAAPKKWAPERRPRQEVKDHVE 252

Query: 184 WLIPICSGSERLRNKDGEKLHPT 206
              P   G +    +  +   P 
Sbjct: 253 SRKPRRDGVKPAWERKKDGDTPA 275


>gi|197336311|ref|YP_002156084.1| methyltransferase [Vibrio fischeri MJ11]
 gi|229560196|sp|B5FE19|RLML_VIBFM RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|197317801|gb|ACH67248.1| methyltransferase [Vibrio fischeri MJ11]
          Length = 705

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 22/140 (15%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N N N     + + ++ + +  L++      DLIF DPP         +     +     
Sbjct: 581 NMNTNGQTGTQHQFLQADCLQWLQQ-ADGEFDLIFIDPP--------TFSNSKRMEQTFD 631

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
              D     E             +R+L+ NGT+    +  N       L+       N  
Sbjct: 632 VQRDHIMLLE-----------NLKRMLRENGTIVFSNNKRNFKMDDAALEKAGLKAKN-- 678

Query: 130 VWRKSNPMPNFRGRRFQNAH 149
           + +++ P+   R +   N  
Sbjct: 679 ISKQTLPLDFARNKHIHNCW 698


>gi|302390476|ref|YP_003826297.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Thermosediminibacter oceani DSM 16646]
 gi|302201104|gb|ADL08674.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Thermosediminibacter oceani DSM 16646]
          Length = 698

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 43/116 (37%), Gaps = 18/116 (15%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQL------NGQLYRPDHSLVDAVTDSWDK 74
           I+G+++ VL+ L       +D+I+ DPPYN         N  + + ++ + +   D +  
Sbjct: 94  IEGDNLEVLKLLRNSYYGRIDVIYIDPPYNTGNDPLYRDNYSIDKKEYDMSEGNIDEYGN 153

Query: 75  FSSFEA---------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
                          +       L   R +L  NG +++    +    +  +   +
Sbjct: 154 RFIINDKNNGHFHSNWLNIMYPILKIARELLSENGAIFISIDDNEYHNLKLICNEI 209



 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 42/118 (35%), Gaps = 7/118 (5%)

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           ++ +N  E +             +  D ++  N  +    +        +     K+G+ 
Sbjct: 375 KKGKNCGEKIRLYFKDKSRNLIAWLKDVIEIDNGIIYKLDNKGNLWDDINFNNLTKEGDI 434

Query: 203 LHPT-QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
             P  +KP  L+  I+        I+LD F GS ++      L       R FI +++
Sbjct: 435 KFPNGKKPVQLIKDIISMVANKNSIVLDFFSGSASTAHAVMALNAEDGGSRKFIMVQI 492


>gi|325973677|ref|YP_004250741.1| DNA methylase N-4/N-6 domain-containing protein [Mycoplasma suis
           str. Illinois]
 gi|323652279|gb|ADX98361.1| DNA methylase N-4/N-6 domain-containing protein [Mycoplasma suis
           str. Illinois]
          Length = 245

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 36/76 (47%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           I +   R +    +  +       +   IL+  +  GD++LD F G GT+   AK L R+
Sbjct: 15  IWNFPNRGKWATHDAKYRGNWSPYIPRNILLRYSSEGDLVLDQFAGGGTTLVEAKLLNRN 74

Query: 248 FIGIEMKQDYIDIATK 263
            IG+++ ++ +    +
Sbjct: 75  IIGVDVNEESLKRCKE 90



 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 57/160 (35%), Gaps = 22/160 (13%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
            +K S   N  Q  +     +I+KG++   L  + ++S+DLI   PPY   ++    +  
Sbjct: 89  KEKTSFEFNGPQGQV-----EIVKGDARD-LNFIKSESIDLICTHPPYANIIHYSEGQVI 142

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV-IGSYHNI-------FR 113
              +  +            +    +     C RVLK N    + +G            F 
Sbjct: 143 EEDLSNLK--------VSEFLEEMKKVAQECYRVLKKNKYCVILMGDTRKNGHMIPLSFD 194

Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           +  + +++ F +   I+  + N       +     H  L+
Sbjct: 195 VMKLFEDVGFKLKELIIKAQHNCKATGFWKTNSVKHNFLL 234


>gi|317494237|ref|ZP_07952653.1| ribosomal protein L11 methyltransferase [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316918010|gb|EFV39353.1| ribosomal protein L11 methyltransferase [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 293

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 47/142 (33%), Gaps = 10/142 (7%)

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHP 205
           H  +         + +  N+  ++         S   +P  +    + +     G   HP
Sbjct: 84  HHKIEQIEDKDWEREWMDNFHPMQFGRRLWICPSWRDVPDPTAVNVMLDPGLAFGTGTHP 143

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKR 264
           T    AL  + L      G  ++D   GSG     A KL     IGI++    I  +   
Sbjct: 144 TT---ALCLQWLDGLDLEGKTVIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRD- 199

Query: 265 IASVQPLGNIELTVLTGKRTEP 286
             + Q  G  E   L   + +P
Sbjct: 200 --NAQRNGVSERLELYLPKDQP 219


>gi|207110396|ref|ZP_03244558.1| adenine specific DNA methyltransferase (mod) [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 67

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 9/58 (15%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           + L  T KP AL+  +L+ ST    IILD F GSGT+             IE+ +DY 
Sbjct: 5   KGLFKTPKPVALIKYLLLCSTPKDSIILDFFAGSGTTAQAV---------IEVNKDYC 53


>gi|300933398|ref|ZP_07148654.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Corynebacterium resistens DSM 45100]
          Length = 659

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 53/132 (40%), Gaps = 19/132 (14%)

Query: 9   INENQNSI--FEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQL------NGQL 57
           + + +NS+     ++  I+G+++ VL+ L       + +I+ DPPYN         +   
Sbjct: 79  MPDKENSVNWDTTQNVFIEGDNLEVLKILQKHYYGQIKMIYIDPPYNTGNDFVYADDYAD 138

Query: 58  YRPDHSLVDAVTDSWDKFSSFEA--------YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
              ++  +   TD   K S+           + +     L   R +LK +G +++    +
Sbjct: 139 SIGNYLELTGQTDEGGKLSTNSESSGRFHSNWLSMMYPRLKLARNLLKNDGVIFISIDDN 198

Query: 110 NIFRIGTMLQNL 121
               + T+   +
Sbjct: 199 EQTALRTLCDQV 210



 Score = 37.3 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 7/60 (11%)

Query: 201 EKLHPTQKPEALLSRILVS-STKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
           +      KP  L+  +L +   K GD +LD F GS ++              RS I +++
Sbjct: 413 KTYFDHPKPVKLIQVLLEASGVKSGDTVLDFFAGSASTAHAVFASNAETGDHRSCILVQL 472


>gi|291320088|ref|YP_003515346.1| type III restriction modification system:Methylase [Mycoplasma
           agalactiae]
 gi|290752417|emb|CBH40388.1| Type III restriction modification system:Methylase [Mycoplasma
           agalactiae]
          Length = 562

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 64/186 (34%), Gaps = 14/186 (7%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKL-------PAKSV--DLIFADPPYNLQ---LNGQL 57
           N + N+  +  + +I G +   L+ L        +++V  D+I+ DPPYN +    +G  
Sbjct: 81  NLSFNNDNKPANTLIIGENYDALKNLIAIERESQSETVNYDVIYIDPPYNTESSLTDGNN 140

Query: 58  YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
                 +  +     DKFS    +       L   +++LK +G ++V         +  +
Sbjct: 141 LSEKDKVSSSKFIYRDKFSRT-GWLNMLNERLRLAKQLLKEDGVIFVSIDDSEQAYLKVL 199

Query: 118 LQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
           +  +         V    NP            HE ++             N   +    E
Sbjct: 200 MDEIFGEENFIACVPAILNPSGRQVNTEIALTHEYILIYGGLDFVPEELDNEYVIHKLPE 259

Query: 177 DVQMRS 182
             + R+
Sbjct: 260 IYKNRN 265



 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 14/134 (10%)

Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL- 203
           ++ + E +              N   +             +I   S + +  NK    + 
Sbjct: 337 WRWSKEKIN-KEKDELVIKMDGNKFKIYPKKRKNTWIFKTIIKGSSFNNKTGNKVLSSIL 395

Query: 204 ----HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEM 253
                 T KP  L+  ++         ILD + GSGT+G    +L       RS+  +  
Sbjct: 396 KSDEFSTAKPVELIKLLIKLHPNKDARILDFYAGSGTTGHAVMELNNEDGGNRSYTLVTN 455

Query: 254 KQDYI--DIATKRI 265
            ++ I  D+  +R+
Sbjct: 456 NENNIGTDVCYERL 469


>gi|38637986|ref|NP_942960.1| putative DNA methyltransferase [Ralstonia eutropha H16]
 gi|32527324|gb|AAP86074.1| putative DNA methyltransferase [Ralstonia eutropha H16]
          Length = 413

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/279 (18%), Positives = 85/279 (30%), Gaps = 71/279 (25%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99
           + L    PPY L               A  +  D       Y  F    L      L   
Sbjct: 130 IALCVTSPPYPL-----------RQARAYGNPTDN-----QYVDFICGALEPIVANLVTG 173

Query: 100 GTLWVIGS-----------YHNIFRIGTMLQN-LNFWILNDIVWRKSNPMPNFRGR---- 143
           G++ +  S              + R+   L + L   +++ I W   +  P         
Sbjct: 174 GSIVLNISNDIFQHRSPARSLYMERLVLALHDRLGLALMDRIPWVNYSKPPGPTRWACVD 233

Query: 144 --RFQNAHETLIWASPSPKA---------KGYTFNYD--------ALKAANEDVQMRSDW 184
                 A+E L+W +  P           + +T  +            A+  D   R   
Sbjct: 234 RVHLATAYEPLLWLTNDPGRVRADNRRVLQAHTERHRRLLEAGGEQRSASYGDGAYRIRP 293

Query: 185 LIPICSGSERLRNKDGEKLH-----------------PTQ---KPEALLSRILVSSTKPG 224
                  S RL     E+ H                 P Q   +P A+        T+PG
Sbjct: 294 QSFGNPTSGRLSRNVVERGHRCADTLAYRRAAATLGLPAQGAMQPTAIPDFFTRFLTEPG 353

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           D+++DPF G+  +G  A++L R +I  E    Y   A +
Sbjct: 354 DLVVDPFGGTIRTGLAAERLGRRWIVTEWILQYARGAAE 392


>gi|229582793|ref|YP_002841192.1| hypothetical protein YN1551_2288 [Sulfolobus islandicus Y.N.15.51]
 gi|228013509|gb|ACP49270.1| conserved hypothetical protein [Sulfolobus islandicus Y.N.15.51]
          Length = 403

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 28/52 (53%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +P +    ++   + + TKPG+ + DPF GSGT    A+   R++I  ++  
Sbjct: 36  YPAKFIPNVIRYFIEAYTKPGETLFDPFAGSGTVAIEAEITGRNYILWDLNP 87


>gi|126724447|ref|ZP_01740290.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Rhodobacterales bacterium HTCC2150]
 gi|126705611|gb|EBA04701.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Rhodobacterales bacterium HTCC2150]
          Length = 662

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 6/56 (10%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQD 256
            K   LL R +   TK  DI+LD FFGSGT G    ++       R FIGI++ ++
Sbjct: 424 PKSVELLKRCIYYGTKKDDIVLDFFFGSGTLGQALFEVERENPRGRKFIGIQLPEE 479



 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 67/171 (39%), Gaps = 34/171 (19%)

Query: 18  EWK---DKIIKGNSISVLEKLP---AKSVDLIFADPPYN------------------LQL 53
           +WK   +  I+G+++  L+ L    A  V +I+ DPPYN                  LQ 
Sbjct: 86  DWKKTQNLFIEGDNLEALKLLQKSYAGKVKMIYIDPPYNTGKEFIYPDKYQDNLDTYLQY 145

Query: 54  NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
            GQ      S V + T+S  +F +   +       L A + +L  +G + +         
Sbjct: 146 TGQKNEEGLS-VTSNTESSGRFHTN--WLNMMYPRLFAAKTLLSQDGVIMISIDEKECCN 202

Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN----AHETLIWASPSPK 160
           +  + + +     ++    + + + N++GR  +     AHE ++    +  
Sbjct: 203 LRQICEQI---FGSENFVAQFSVVTNYKGRNDKTNVAMAHEYVLVFRKNEF 250


>gi|260494584|ref|ZP_05814714.1| site-specific DNA-methyltransferase [Fusobacterium sp. 3_1_33]
 gi|260197746|gb|EEW95263.1| site-specific DNA-methyltransferase [Fusobacterium sp. 3_1_33]
          Length = 700

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQD 256
           +KP  LL R++  ST   DI+LD F GS ++     +L       R FI +++ + 
Sbjct: 441 KKPVKLLQRLINLSTNNNDIVLDFFSGSASTAHAVMQLNAEDGGNRKFIMVQIDEK 496



 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 45/116 (38%), Gaps = 18/116 (15%)

Query: 24  IKGNSISVLEKLPAK---SVDLIFADPPYNLQL------NGQLYRPDHSLVDAVTDSWDK 74
           I+G+++ VL+ L      ++ +I+ DPPYN         N ++ + +        D  ++
Sbjct: 96  IEGDNLEVLKLLRQNYRGAIKMIYIDPPYNTGNDFVYNDNFKISQKESDKKQGYIDENNQ 155

Query: 75  F---------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
                          +       L   R +L  +G +++    + +  IG +  ++
Sbjct: 156 RLQKNSKDSNRFHANWLTMMYPRLKIARDLLSEDGVIFIHIDDNEMENIGKVCNDI 211


>gi|153874051|ref|ZP_02002414.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152069485|gb|EDN67586.1| conserved hypothetical protein [Beggiatoa sp. PS]
          Length = 395

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           Q    L+  ++    KP  ++ DPF GSGT      K     +G E+      ++ 
Sbjct: 23  QFTPELIDYLIDIHAKPHFLVGDPFSGSGTVLLECSKRGIDAMGCEINPSAYAMSK 78


>gi|145629606|ref|ZP_01785403.1| putative type III restriction-modification system methyltransferase
           [Haemophilus influenzae 22.1-21]
 gi|144978117|gb|EDJ87890.1| putative type III restriction-modification system methyltransferase
           [Haemophilus influenzae 22.1-21]
          Length = 298

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 39/105 (37%), Gaps = 23/105 (21%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKL 244
           I   +G+  L +    K     K   L+ +++  +   P D+ILD F GSGT+     +L
Sbjct: 39  IYTRNGTAELEDLFEAKYFDFPKSIQLIKQLIEQAILNPNDLILDFFAGSGTTAHAVMQL 98

Query: 245 --------RRSFIGI-------EMKQDY-------IDIATKRIAS 267
                    R FI +       E  + Y        DI   RI  
Sbjct: 99  NAEDEDNGNRKFICVQLPEPTDEKSEAYKAGYKTIFDITKARIEK 143


>gi|189485044|ref|YP_001955985.1| type II DNA modification methylase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|170287003|dbj|BAG13524.1| type II DNA modification methylase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 528

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 63/202 (31%), Gaps = 39/202 (19%)

Query: 141 RGRRFQNAHETLIWASPSPKAKGYT-FNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
            GR  +  H        S   K Y   N     A    +    +W +   +  E    K 
Sbjct: 36  YGRIHKIGHNGSTQILKSELIKYYHSLNQSRENAWKNKLGQDLNWKLSFDNLKESDTTKH 95

Query: 200 GEKLHPTQKPE--ALLSRIL---------VSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
             +LHP +      L    L                DIILDPF GSGT+ A A +L    
Sbjct: 96  IHRLHPYKGKFIPQLAEYFLDDHIDEFKKEKYFNKNDIILDPFCGSGTTLAQADELGMHA 155

Query: 249 IGIEMK-------------------QDYIDIATKRIASVQPLGN--------IELTVLTG 281
           IG+++                    +  I+I T+R+                IE      
Sbjct: 156 IGVDVSYFNSFITNCKINTYDVVSLEKNINIITERLFENHKFSKDIEFEQVLIEKLKKFN 215

Query: 282 KRTEPRVAFNLLVERGLIQPGQ 303
            +  P   F   +++ LI   +
Sbjct: 216 DKYFPAPKFKHKIKQNLIDENK 237


>gi|78188310|ref|YP_378648.1| type II DNA modification methyltransferase M.TdeIII [Chlorobium
           chlorochromatii CaD3]
 gi|78170509|gb|ABB27605.1| type II DNA modification methyltransferase M.TdeIII [Chlorobium
           chlorochromatii CaD3]
          Length = 530

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 51/161 (31%), Gaps = 12/161 (7%)

Query: 106 GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY- 164
            S  N               L   V   +       GR  +  H      S       Y 
Sbjct: 3   MSMRNDLLTIAEASQWASNYLGKQVTTSNIAYLIQYGRVKKFGHNGSTKISKEHLCNYYA 62

Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSSTK 222
           T N     +  E +    +W +      E    K   +LHP +      L+   L   T 
Sbjct: 63  TINRQREHSWKEQLGSDLNWSLSFDQYKEAETTKHVHRLHPYKGKFIPQLVEYFLDDHTD 122

Query: 223 ---------PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                     GDI+LDPF GSGT+   + +L    IGI++ 
Sbjct: 123 DFKQQMYFTKGDIVLDPFSGSGTTIVQSNELDIHAIGIDVS 163


>gi|118593982|ref|ZP_01551334.1| DNA methyltransferase SptAIM; protects DNA against PvuII
          endonuclease [Stappia aggregata IAM 12614]
 gi|118433432|gb|EAV40107.1| DNA methyltransferase SptAIM; protects DNA against PvuII
          endonuclease [Stappia aggregata IAM 12614]
          Length = 77

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR 59
          KI   +S+ V+E++   SV+LI   PP+ L        
Sbjct: 18 KIFHADSLEVMERMDDASVNLIMTSPPFALTRKKDYGN 55


>gi|322514324|ref|ZP_08067377.1| type III restriction-modification system methyltransferase
           [Actinobacillus ureae ATCC 25976]
 gi|322119778|gb|EFX91812.1| type III restriction-modification system methyltransferase
           [Actinobacillus ureae ATCC 25976]
          Length = 586

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 60/193 (31%), Gaps = 25/193 (12%)

Query: 17  FEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN------------------G 55
            + ++ +I+G ++ VL+ L      S+ +I+ DPPYN   +                  G
Sbjct: 63  EQTQNILIEGENLDVLKALQKSYFNSIKMIYIDPPYNTGNDFVYNDNFAQSQTDYQAQTG 122

Query: 56  QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
           ++            ++ +       +       L   R +LK +G +++    +   ++ 
Sbjct: 123 EIGEDGFLKKAFRKNAKENGHFHSNWLNMMLPRLHLARNLLKDDGVIFISIDDNEQAQLK 182

Query: 116 TMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL--- 171
            +   +         V  K         + F      L+    S     + F        
Sbjct: 183 LLCGEVFGEENFVANVIWKHTEQNKNDEKYFSRQFNYLLVYKKSNALNKFRFPRTEQDNV 242

Query: 172 KAANEDVQMRSDW 184
             +N D   +  W
Sbjct: 243 NYSNPDNDPKGKW 255



 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 25/114 (21%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGSGTSGAVAKKL------RRSFIGI-- 251
             +  T KP   L RI+       D ++LD F GS T+     +L       R FI +  
Sbjct: 352 NAIFDTPKPTRFLKRIMELFHFDKDYLVLDFFAGSSTTAHAVMQLNAEDNGNRRFICVQL 411

Query: 252 -----EMKQDY-------IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
                E  + Y        +I+ +RI         ++     +     V F + 
Sbjct: 412 PEETDEKSEAYKAGFKNIAEISKERIRRA----GSQILQKNEENRPLDVGFKVF 461


>gi|320538041|ref|ZP_08037943.1| DNA (cytosine-5-)-methyltransferase [Treponema phagedenis F0421]
 gi|320145096|gb|EFW36810.1| DNA (cytosine-5-)-methyltransferase [Treponema phagedenis F0421]
          Length = 643

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 60/212 (28%), Gaps = 30/212 (14%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQ----LNGQLYRP--DHSLVDAVTDSWDK 74
           I+G+++ VL+ L       V +I+ DPPYN                D++      D    
Sbjct: 117 IEGDNLDVLKLLRETYLNRVKMIYIDPPYNTGEDFVYEDDFTESVADYAARSGDYDEQGN 176

Query: 75  F---------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFW 124
                          +       L   + +L  +G +++    + +  +  +   +    
Sbjct: 177 RLVENPKTNGRFHTDWLNMIYPRLRLAKDLLSDDGVIFISIDDNEVHNLRKVCDEIFGEI 236

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLI-----------WASPSPKAKGYTFNYDALKA 173
              +      +     R       HE L            + +P  KA    +     K 
Sbjct: 237 NFVNCFIWNCSTAGGIRPNFASKTHEYLFSYAKNKELLETFFAPLSKAAISMYKQKDEKG 296

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
              D            +    +   DGE +HP
Sbjct: 297 IYRDKDFVFKNDSKNINQKYEIVCPDGEIVHP 328



 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 61/200 (30%), Gaps = 33/200 (16%)

Query: 89  LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
           +     ++ P+G +      +    I +   +     L      K++P+    G      
Sbjct: 312 INQKYEIVCPDGEIVHPRDGYIYRFIKSTFDDAVSKNLVSFKNTKTSPLLKNNG------ 365

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
            E   W     K  G      A     E   M +     + +  E        ++    K
Sbjct: 366 -EQASWNIYIKKYLGDAKGAPATLIPKEYASMYNIGTTLVQNMFE------NNRVFENVK 418

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEM-------KQ 255
           P   +  I+      G IILD F GS T+     +L       R +I +++        +
Sbjct: 419 PVDYIEYIIELIDTKGSIILDFFSGSATTAHAVMQLNAEDGGNRKYIMVQIPELTDKMSE 478

Query: 256 DY-------IDIATKRIASV 268
            Y        ++  +RI   
Sbjct: 479 TYKAGYKNICEVGKERIRRA 498


>gi|242241085|ref|YP_002989266.1| ribosomal protein L11 methyltransferase [Dickeya dadantii Ech703]
 gi|242133142|gb|ACS87444.1| ribosomal protein L11 methyltransferase [Dickeya dadantii Ech703]
          Length = 295

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 60/186 (32%), Gaps = 12/186 (6%)

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHP 205
           H  +         + +  N+  ++         S   IP  +    + +     G   HP
Sbjct: 84  HHKIEQLEDKDWEREWMDNFHPMQFGKRLWICPSWREIPDPNAVNVMLDPGLAFGTGTHP 143

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKR 264
           T    +L  + L      G  ++D   GSG     A KL     IGI++    I  +   
Sbjct: 144 TT---SLCLQWLDGLDLAGKTVIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRD- 199

Query: 265 IASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLIS 324
             + Q  G  E   L   + +P      +V   ++     L      ISA   A G L  
Sbjct: 200 --NAQRNGVSERLELYLPKDQPADLSADVVVANIL--AGPLRELAPLISALPKAGGHLGL 255

Query: 325 GTELGS 330
              L S
Sbjct: 256 SGVLAS 261


>gi|306824706|ref|ZP_07458050.1| DNA methylase N-4/N-6 domain protein [Streptococcus sp. oral taxon
           071 str. 73H25AP]
 gi|304432917|gb|EFM35889.1| DNA methylase N-4/N-6 domain protein [Streptococcus sp. oral taxon
           071 str. 73H25AP]
          Length = 582

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 61/155 (39%), Gaps = 15/155 (9%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYR 59
           +  +  I EN +S  E  + +++G+++  L  L    A  +D+I+ DPPYN      +Y 
Sbjct: 77  EDETKKIVENIDS--ENYNFLLEGDNLHSLHLLEKTHAGRIDVIYIDPPYNTGKKDFVYN 134

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
                 D + D  D + S   + +F    L   + +L   G +++    +   ++  +  
Sbjct: 135 ------DKIIDKKDVY-SHSKWLSFMNKRLEIAKNLLSETGVIFISIDDNEQAQLKLLCN 187

Query: 120 NL---NFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
            +   N ++   IV        N       + +  
Sbjct: 188 EVFGENNFLTQFIVENNPKGRKNSNFASVTSEYCI 222



 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 8/92 (8%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIE 252
           DG+      K   L+  +L  + +    ILD F GSGT+G    +L       R +I   
Sbjct: 397 DGKSPFDYPKNVGLIKLLLTLNDRRDITILDFFAGSGTTGHAVAQLNNEDGGKRKYILCT 456

Query: 253 MKQDYI--DIATKRIASVQPLGNIELTVLTGK 282
             ++ I  ++  KR+ ++Q      L     K
Sbjct: 457 NNENNICEEVTYKRLLNIQKDLPHNLKYFKTK 488


>gi|255524749|ref|ZP_05391700.1| DNA methylase N-4/N-6 domain protein [Clostridium carboxidivorans
           P7]
 gi|255511522|gb|EET87811.1| DNA methylase N-4/N-6 domain protein [Clostridium carboxidivorans
           P7]
          Length = 345

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 48/117 (41%), Gaps = 20/117 (17%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHS--------LVDAVTDSW 72
           I+G+++ VL+ L       + +I+ DPPYN   N  +Y+ D+         +   V D  
Sbjct: 114 IEGDNLEVLKLLQKSYQNKIKMIYIDPPYNTG-NDFVYKDDYKDNLQNYFEVTGQVDDDG 172

Query: 73  DKFSSFEA--------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
           +K S+           +       L   R +LK +G +++    +    +  +  ++
Sbjct: 173 NKTSTNSESSGRYHTNWLNMMYPRLRLARNLLKDDGVIFISIDDNEFGNLKKVCDDI 229


>gi|217031477|ref|ZP_03436982.1| hypothetical protein HPB128_21g35 [Helicobacter pylori B128]
 gi|216946677|gb|EEC25273.1| hypothetical protein HPB128_21g35 [Helicobacter pylori B128]
          Length = 203

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 11/107 (10%)

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           L + +         +    LK + ++     D+      G++ L     + L  T KP A
Sbjct: 48  LYYQNRLIFKNNRPYEKYYLKESQDNCLSVLDFY--SRQGTKDLEKLGLKGLFKTPKPVA 105

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           L+  +L+ ST    IILD F GSGT+             IE+ +DY 
Sbjct: 106 LIKYLLLCSTPKDSIILDFFAGSGTTAQAV---------IEVNKDYC 143


>gi|254167440|ref|ZP_04874292.1| DNA methylase domain protein [Aciduliprofundum boonei T469]
 gi|197623703|gb|EDY36266.1| DNA methylase domain protein [Aciduliprofundum boonei T469]
          Length = 811

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 71/205 (34%), Gaps = 21/205 (10%)

Query: 81  YDAFTRAWLLACRRVLKPNGTLW-------VIGSYHNIFRIGTML-QNLNFWILNDIVWR 132
           Y      +       + P G ++         G +    +   +L +N  F + N+ + R
Sbjct: 326 YFDKMNIFFKNLSTYVLPTGYVFIDIGDSIFAGVHIPTHKFLIILAENHGFKLENEYMIR 385

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED--VQMRSDWLIPICS 190
                   R  ++   +        + +    T +Y    +  E+  +Q +         
Sbjct: 386 SRRS----RKGKYVGQYLLTFRRLNNTQPLKTTLDYFVTSSKKEEESIQEKIKNFQETLP 441

Query: 191 GSERLRNKD--GEKLHP-----TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
                 NK   G K H      ++   A+   ++   TK  DIILDPF G GT    AK 
Sbjct: 442 YKNYPFNKRNWGHKYHSLCSYQSKLKPAIAHFLVKIFTKKDDIILDPFGGVGTIPLEAKL 501

Query: 244 LRRSFIGIEMKQDYIDIATKRIASV 268
           L RS   +++      +A  ++  V
Sbjct: 502 LNRSSYMVDLSPTAYIVAKAKLEYV 526



 Score = 41.1 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 193 ERLRNKDGEKLHPTQ--KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           ++ +NK   + +P      +  +  I+         ++DPF GSGT+   A K       
Sbjct: 15  QKNKNKPIHRWYPFTEGYSDDFVMSIIKEFADKSTYLVDPFGGSGTTLVTASKYGLKSGY 74

Query: 251 IEMKQ 255
            E+  
Sbjct: 75  CEINP 79



 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 19/112 (16%)

Query: 8   AINENQNSIFEWKD---KIIKGNSISVLEKLPAKSVDLIFADPP------YNLQLNGQLY 58
            IN + ++    K+   KII G++  +   L  + +D+I   PP      ++     + +
Sbjct: 648 KINNSYDAEVSTKNVLSKIIYGDAFKI-SYLINRKIDVIITSPPFIHSTRFHTNNWIRNW 706

Query: 59  RPDHSLVDAVTDSWD-----KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI 105
                  D   +        +  +   Y    + W     +VLKPNG + + 
Sbjct: 707 FCGWEPSDFAKEKKKFVEVLQEKNLNIYTQLLKEW----AKVLKPNGLIIMH 754


>gi|188997491|ref|YP_001931742.1| DNA methylase N-4/N-6 domain protein [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932558|gb|ACD67188.1| DNA methylase N-4/N-6 domain protein [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 385

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 7/169 (4%)

Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK--DGEKLHPTQKPEALLSRILVS 219
           K YT +        ++      +   +    ++       G   +    P  ++  ++  
Sbjct: 123 KQYTLDPCKKSELIDEFYRPPIFSTTLWDYPKQSYGDTPKGNNKYAGVTPAFIIYNLIYR 182

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
            T PGD++ DP  GSGT+  V K+ RR  +  ++     DI      ++    N    V 
Sbjct: 183 YTYPGDLVCDPMAGSGTTIDVCKEERRRVVAFDIVPTRSDIIQADARNIPLEDNSVDMVF 242

Query: 280 TGKRTEPRVAFNLL-VERGLIQPGQI-LTNAQGNISA---TVCADGTLI 323
                   + +N   +  G I   +    +    +      +  DG ++
Sbjct: 243 IDSPYGDNIRYNDHPLNIGHIPASEERFYDELEKVMIECHRILKDGKIL 291



 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 67/179 (37%), Gaps = 18/179 (10%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           II+ ++ ++   L   SVD++F D PY   +    +  +   +          +S E + 
Sbjct: 223 IIQADARNI--PLEDNSVDMVFIDSPYGDNIRYNDHPLNIGHI---------PASEERFY 271

Query: 83  AFTRAWLLACRRVLKPNGTL-WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                 ++ C R+LK    L W+IG     +  G  +  + F +   +V           
Sbjct: 272 DELEKVMIECHRILKDGKILAWLIGD---QWAKGVYI-PVGFKVYERLVKHFEPVDVICV 327

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI-CSGSERLRNKD 199
            R+ Q +  T  W S + +   Y   +  L    +  + R    + +     ER + KD
Sbjct: 328 ARKNQYS-NTPFWHSKALQHNFYLRGFKHLIIVRKSDKKRIPKDLKVNWKYYERAKKKD 385


>gi|163868805|ref|YP_001610029.1| type III restriction system methylase [Bartonella tribocorum CIP
           105476]
 gi|161018476|emb|CAK02034.1| type III restriction system methylase [Bartonella tribocorum CIP
           105476]
          Length = 610

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 52/158 (32%), Gaps = 22/158 (13%)

Query: 20  KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN-----------------GQLYR 59
           ++  I+G+++ VL+ L     + V +I+ DPPYN   +                  +   
Sbjct: 88  QNLFIEGDNLEVLKLLQKPYHRQVKMIYIDPPYNTGNDFVYKDDFKDGIQNYLEMTRQLD 147

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
            +   +   + S  ++ +   +       L   R +L+ +G +++    + +  +  +  
Sbjct: 148 NEGKKIGTNSSSAGRYHTN--WLNMMYPRLKLARNLLRDDGVIFISIDDNEVHNLRKLCD 205

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
            +         +                  E +I  S 
Sbjct: 206 EVFGEENFIAQFTWRKTDNQANIGNIARVKEYIILYSK 243



 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 59/177 (33%), Gaps = 21/177 (11%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT-----QKPEALLS 214
            A G T         +E     ++  + I  G+ +      E L         KP +L+ 
Sbjct: 319 WATGKTELPYGKIYLHESQGQIANDFLSIEFGTNQEAGVALENLFNARYFDFPKPLSLIK 378

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQ------DYIDIAT 262
             L  +T   D+ILD F GSGT+     +L       R  I +++ +      +      
Sbjct: 379 HFLTIATN-DDLILDFFAGSGTTAHAVMQLNAEDGGKRRCISVQLPEPTDEKSEAFKAGY 437

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           K IA +       L     K  E + A     E G I  G  +     +      AD
Sbjct: 438 KNIAEI---SKERLRRAGKKIKEEQSAQLDFNENGGIDTGFKVFKLDSSNIKRWEAD 491


>gi|227536812|ref|ZP_03966861.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|227243368|gb|EEI93383.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Sphingobacterium spiritivorum ATCC 33300]
          Length = 663

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 63/159 (39%), Gaps = 21/159 (13%)

Query: 18  EWKDKIIKGNSISVLEKLPAKS----VDLIFADPPYNLQLN-------GQLYRPDHSLVD 66
           E ++ II+G +++VL+ L ++S    +  I+ DPPYN   +        Q  +      +
Sbjct: 95  ESENLIIEGENLAVLKLL-SQSYREQIKCIYIDPPYNTGNDFVYSDKFNQDRKEYWEDTE 153

Query: 67  AVTDSWDKFSSFE-------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
              D +   S+ E        +     + LL  R++L  +G +++    + I  +  +  
Sbjct: 154 ITEDGYKIDSNIETDGRFHSNWLNMMYSRLLIARQLLCEDGVIFISLDDNEIHHLKKLCD 213

Query: 120 NL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
            +         +  +SN       +  +  HE ++  + 
Sbjct: 214 EVFGEENFYSSIIVRSNSRGQTYNQIAKT-HEYILVYTK 251



 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
            +  + G    Y       + +   + +L    +   +    +GE   P  KP  L+ R 
Sbjct: 366 KADGSFGIYEKYRKTTYKPKSIWDENPFLTETGTVEVKNLGFEGEFDFP--KPVKLVRRC 423

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +  + + GD++LD F GSGT+G    +L 
Sbjct: 424 IELTVEKGDLVLDFFAGSGTTGQAIFELN 452


>gi|330942085|gb|EGH44750.1| site-specific DNA methyltransferase [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 262

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
             E+   K     HPT KP  L+  +L   T  G   LDPF GSG++G  A
Sbjct: 212 KVEKTDTKGNN--HPTVKPTDLMGYLLRLVTPLGGKTLDPFMGSGSTGKAA 260


>gi|134300088|ref|YP_001113584.1| DNA methylase N-4/N-6 domain-containing protein [Desulfotomaculum
           reducens MI-1]
 gi|134052788|gb|ABO50759.1| DNA methylase N-4/N-6 domain protein [Desulfotomaculum reducens
           MI-1]
          Length = 396

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 21/105 (20%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL-------RRSFIGI 251
           + + +    KP  LL ++++ +TK  DI+LD F GS ++      L        R FI +
Sbjct: 156 EHKGIFEYTKPIKLLQKLMLIATKKNDIVLDFFSGSASTADALLSLSAEENKGNRKFIMV 215

Query: 252 -------EMKQDY-------IDIATKRIASVQPLGNIELTVLTGK 282
                  E  + +        +I  +RI         E   L GK
Sbjct: 216 QLPEETDEKSEAFKAGYKNICEIGKERIRRAGKRILEEHPELAGK 260


>gi|255007947|ref|ZP_05280073.1| type III DNA modification enzyme [Bacteroides fragilis 3_1_12]
          Length = 664

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 58/163 (35%), Gaps = 23/163 (14%)

Query: 24  IKGNSISVLEKLP---AKSVDLIFADPPYNLQLN-----------------GQLYRPDHS 63
           I+G+++  ++ L    A  VD+I+ DPPYN   +                    Y  +  
Sbjct: 107 IEGDNLDAMKLLKKSYAGKVDVIYIDPPYNTGKDFIFNDTFALSQEESDEKQGRYNEEGQ 166

Query: 64  LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
            +   T++  KF S   + +   A L+    +L  NG +++    H +  +  +   +  
Sbjct: 167 RLFQNTEANGKFHS--DWCSMMYARLMLAHTLLNDNGIIFISIDDHELANLIKIGNEVFN 224

Query: 124 WILNDIVWRKSNP-MPNFRGRRFQNAHETLIWASPSPKAKGYT 165
                 V+  +    P    ++ +   E ++          + 
Sbjct: 225 ASNFIDVFNWAKTETPENLSKKSKQIIEYIVCYQKKKNDMKFQ 267



 Score = 43.4 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 9/72 (12%)

Query: 201 EKLHPTQKPEALLSRILV--SSTKPGDIILDPFFGSGTSGAVAKKLR---R----SFIGI 251
           +K+    KP +L+  +     +     I++D F GSGT+     ++    R     +I +
Sbjct: 404 KKVFNFPKPVSLIQYLCEFIDTKNKDCIVMDFFSGSGTTAEAVMRMNMKPRKNKVKYILV 463

Query: 252 EMKQDYIDIATK 263
           ++ +D  +   K
Sbjct: 464 QLPEDVTETIKK 475


>gi|257465361|ref|ZP_05629732.1| ribosomal protein L11 methyltransferase [Actinobacillus minor 202]
 gi|257451021|gb|EEV25064.1| ribosomal protein L11 methyltransferase [Actinobacillus minor 202]
          Length = 294

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 59/167 (35%), Gaps = 12/167 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    AL  + 
Sbjct: 95  WEREWMDNFHPMQFGKRLWICPSWREVPDPNAVNVMLDPGLAFGTGTHPTT---ALCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG     A KL  +  IGI++    I  +T    + +  G  +
Sbjct: 152 LDSLDLTGKTVIDFGCGSGILAIAALKLGAKRAIGIDIDPQAILASTN---NAEANGVAD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
              L   + +P+     +V   ++     L     NI   V   G L
Sbjct: 209 RLELFLAKDQPKDLLADVVVANIL--AGPLKELAPNIITLVKPQGDL 253


>gi|331686052|ref|ZP_08386613.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H299]
 gi|331076724|gb|EGI47961.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H299]
          Length = 30

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY 49
          + I+G+ + V+   P  +VD I  DPPY
Sbjct: 3  RFIQGDCVRVMATFPGNAVDFILTDPPY 30


>gi|302391685|ref|YP_003827505.1| DNA methylase N-4/N-6 domain protein [Acetohalobium arabaticum DSM
           5501]
 gi|302203762|gb|ADL12440.1| DNA methylase N-4/N-6 domain protein [Acetohalobium arabaticum DSM
           5501]
          Length = 369

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
                      S  E   ++ G   +    P    ++++ + ++ GD ILDPF G GTS 
Sbjct: 1   MNNYKKYFNGYSTPESRWSRFG--PYYAMFPLEFAAKVITNHSEKGDWILDPFLGRGTSV 58

Query: 239 AVAKKLRRSFIGIEMKQ 255
                L R  +GIE+  
Sbjct: 59  YAGSILERKGLGIEINP 75



 Score = 39.2 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 41/122 (33%), Gaps = 13/122 (10%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKL-PAK--SVDLIFADPPY------NL 51
           M +K +    + +    E + ++  G+S  +L ++         L+   PPY       +
Sbjct: 200 MKKKVNWRYKKGRPQTEESEIEL--GDSTVILPEIVDDNNRKFSLLLTSPPYYGVTDYFI 257

Query: 52  QLNGQLYRPDHSLVDAVTDSWDK--FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
               +L+    S     +    K  FSS E Y            +V+K    ++V     
Sbjct: 258 DQWLRLWMLGGSAKPNYSSDKHKGRFSSKENYYNLLDTVFSNASKVMKEKSAIYVRTDTR 317

Query: 110 NI 111
             
Sbjct: 318 EF 319


>gi|284051869|ref|ZP_06382079.1| hypothetical protein AplaP_10401 [Arthrospira platensis str.
           Paraca]
 gi|291566633|dbj|BAI88905.1| methyltransferase [Arthrospira platensis NIES-39]
          Length = 391

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 2/74 (2%)

Query: 187 PICSGSERLRNKDGEKLHPT--QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           PI      + NK    L     Q    L+  IL     P  +ILDPF GSGT    A  L
Sbjct: 7   PIPQEKLNIVNKTRSNLFSWRGQFSPQLIEIILTQYCPPDAVILDPFAGSGTVLLEAGNL 66

Query: 245 RRSFIGIEMKQDYI 258
           +    G ++     
Sbjct: 67  QLPAYGFDINPAAY 80



 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 21/138 (15%)

Query: 35  LPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAV-------------TDSWDKFSSFEA 80
           LP  S+D I   PPY N+    Q YR    L+                 +  ++F +   
Sbjct: 193 LPNNSIDFIITSPPYINVFNYHQNYRKSAELLGWDLLTIARSEIGSNRANRSNRFYTVVQ 252

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNI-----FRIGTMLQNLNFWILNDIVWRKSN 135
           Y       L    RV K N  + ++  + +      F    +++ +   I  ++  ++  
Sbjct: 253 YCLDMAETLRELSRVSKKNARIILVIGHQSNVLGVPFYNADIIEKMG--IQANLFHKQLR 310

Query: 136 PMPNFRGRRFQNAHETLI 153
               F+ +  Q   E +I
Sbjct: 311 QKREFKNKFGQVIREDII 328


>gi|78773895|gb|ABB51240.1| methyltransferase [Arthrospira platensis]
          Length = 391

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 2/74 (2%)

Query: 187 PICSGSERLRNKDGEKLHPT--QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           PI      + NK    L     Q    L+  IL     P  +ILDPF GSGT    A  L
Sbjct: 7   PIPQEKLNIVNKTRSNLFSWRGQFSPQLIEIILTQYCPPDAVILDPFAGSGTVLLEAGNL 66

Query: 245 RRSFIGIEMKQDYI 258
           +    G ++     
Sbjct: 67  QLPAYGFDINPAAY 80



 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 21/138 (15%)

Query: 35  LPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAV-------------TDSWDKFSSFEA 80
           LP  S+D I   PPY N+    Q YR    L+                 +  ++F +   
Sbjct: 193 LPNNSIDFIITSPPYINVFNYHQNYRKSAELLGWDLLTIARSEIGSNRANRSNRFYTVVQ 252

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNI-----FRIGTMLQNLNFWILNDIVWRKSN 135
           Y       L    RV K N  + ++  + +      F    +++ +   I  ++  ++  
Sbjct: 253 YCLDMAETLRELSRVSKKNARIILVIGHQSNVLGVPFYNADIIEKMG--IQANLFHKQLR 310

Query: 136 PMPNFRGRRFQNAHETLI 153
               F+ +  Q   E +I
Sbjct: 311 QKREFKNKFGQVIREDII 328


>gi|300112784|ref|YP_003759359.1| DNA methylase N-4/N-6 domain-containing protein [Nitrosococcus
           watsonii C-113]
 gi|299538721|gb|ADJ27038.1| DNA methylase N-4/N-6 domain protein [Nitrosococcus watsonii C-113]
          Length = 906

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 49/161 (30%), Gaps = 11/161 (6%)

Query: 32  LEKLPAKSVDLIFADPPY--NLQLNGQLYRPDHSLVDAVTDSWD------KFSSFEAYDA 83
           L  +P  SVD +F DPP+  N+  + Q    +  L     +  +      +      Y A
Sbjct: 468 LNNIPDNSVDFVFTDPPFGGNINYSEQNILAEWWLRLFTNNESEAITNSVQKKGLPEYQA 527

Query: 84  FTRAWLLACRRVLKPNGTL-WVIGSYHN--IFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                     RVLKP   +     +  N     I   L+   F +    V  K +   + 
Sbjct: 528 LMTQCFKEYYRVLKPGRWMVVEFHNSSNGIWSAIQQALEASGFVVATVAVLDKIHSTLHQ 587

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
             +      +  I          + F   A  A      +R
Sbjct: 588 DHKAAAVDKDLAITVYKPNGGLEHRFEMSAGSADGAWDFIR 628



 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 3/103 (2%)

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
            P+P    +   ++A K    +                +         + T+ P   +  
Sbjct: 77  CPNPWMADFIAEWEAQKPEQPEGHHYHREPFAADVSEGKNDPIYRIPSYHTKVPPKAIEN 136

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAV---AKKLRRSFIGIEMKQ 255
            ++  T+PGDI+LD F G+G +G      K  +R+ I I++  
Sbjct: 137 YILHYTEPGDIVLDAFCGTGMTGVASLLCKPAKRNAILIDLSP 179


>gi|253991084|ref|YP_003042440.1| hypothetical protein PAU_03610 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782534|emb|CAQ85698.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 210

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 64/225 (28%), Gaps = 47/225 (20%)

Query: 39  SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKP 98
           S D+I  DPP+N+         D+   +                                
Sbjct: 17  SADMILTDPPFNMDGKKLRTIIDNQQCN-------------------------------- 44

Query: 99  NGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
              L +I +      +   +    + +  D V     P  +    +    H+T ++   +
Sbjct: 45  --HLVLITTMRQ---LLDFMSAPGWELSFDFVLDAVAPKKSRNLSQPNYTHQTGVYLYRT 99

Query: 159 PKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILV 218
            +   +           E       W     +  ER++       H   K    ++ +L 
Sbjct: 100 GEKSLFNRKLRQRSDVFEANGY---WPTIFHAPRERMQE------HGMAKNIDAITDLLG 150

Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           S       + D F GSGT+   A +L      IE  + +     K
Sbjct: 151 SFDNISS-VADLFAGSGTTAIAAFELDIDCKLIEFDEKHCRNIMK 194


>gi|146343968|ref|YP_001201824.1| putative restriction-modification methylase [Pseudomonas
           fluorescens SBW25]
 gi|146187780|emb|CAM96108.1| putative restriction-modification methylase [Pseudomonas
           fluorescens SBW25]
          Length = 426

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 89/275 (32%), Gaps = 71/275 (25%)

Query: 43  IFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL 102
           I   PPY L  +     P  S                    +    L      L   G+L
Sbjct: 145 IICSPPYPLAKSRAYSNPTQS----------------EIVKYIVGILEPIIEKLADTGSL 188

Query: 103 WVIGSYHNIF------------RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA-- 148
             I   ++IF            R+   L+++   +++ ++W+ + P              
Sbjct: 189 -AINVSNDIFLPNSPARSTYVERLTIALEDMGLGLIDRLIWKSNKPPGPVHWASKTRQLL 247

Query: 149 ---HETLIWASPSPK------------------------AKGYTFNY-----------DA 170
              +E ++  + +PK                         +  T NY            +
Sbjct: 248 NTTYEPILIFAKNPKLFKGDNRRVLEPHSERHLALINSGGEKRTTNYGDGAYRLRVGSYS 307

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKD--GEKLHPTQKPEALLSRILVSSTKPGDIIL 228
            +      +   +  I    GS+   + +  G   H   +P ++   ++   T+ GD+++
Sbjct: 308 NQTEGRIPKNVLERGIRCPYGSQFRASAEALGLPSHGAGQPFSVAEFLIKYLTEEGDLVV 367

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           DP+ G   +G  A+ L R++I  E    Y+  A +
Sbjct: 368 DPWGGRSMTGLAAEMLNRTWITGERALQYVRGAAE 402


>gi|307249865|ref|ZP_07531839.1| hypothetical protein appser4_6630 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858054|gb|EFM90136.1| hypothetical protein appser4_6630 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 645

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 50/123 (40%), Gaps = 24/123 (19%)

Query: 20  KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN------------------GQLY 58
           ++  I+G+++  L+ L       V +I+ DPPYN   +                  GQ+ 
Sbjct: 97  QNLFIEGDNLEALKLLQETYLGKVKMIYIDPPYNTDKDFIYKDNFAMANEDYQLESGQVD 156

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
              + LV   ++S  +F S   + +   + L   R +L  +G +++    + +  +  + 
Sbjct: 157 EEGNRLV-VNSESNGRFHS--DWLSMIYSRLKLARNLLTDDGVIFISIDDNEVANLKRIC 213

Query: 119 QNL 121
             +
Sbjct: 214 DEI 216



 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL----- 244
           +G+ +++     KL    KP  L+   L   T     ILD F GS T+     +L     
Sbjct: 398 NGTSQIKEIFKNKLFQNPKPIELIMDFLRIGTNVNSCILDFFAGSATTAHAVMQLNAEDG 457

Query: 245 -RRSFIGIEM 253
             R FI +++
Sbjct: 458 GNRKFIMVQI 467


>gi|209547699|ref|YP_002279616.1| DNA methylase protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209533455|gb|ACI53390.1| putative DNA methylase protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 217

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 32/64 (50%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            P AL+S +L   TK GD + DPF G GT+  V ++  R   G E  +   +   +RI +
Sbjct: 28  FPGALVSALLDRFTKSGDAVFDPFVGLGTTFFVCEQRGRIPYGTEADRQRYEWVKQRITT 87

Query: 268 VQPL 271
              L
Sbjct: 88  KHHL 91


>gi|56550600|ref|YP_161666.1| putative DNA methyltransferase [Cupriavidus metallidurans CH34]
 gi|56410306|emb|CAI30188.1| putative DNA methyltransferase [Cupriavidus metallidurans CH34]
          Length = 86

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           H   +P  +        ++PGD+++DPF G+  +G  A++L R +I  E    Y   A +
Sbjct: 4   HGAMQPTDIPDFFTRFLSQPGDLVVDPFGGTIRTGLAAERLGRRWIATEWILQYARGAAE 63


>gi|262038915|ref|ZP_06012258.1| type III restriction-modification system EcoPI, modification
           subunit [Leptotrichia goodfellowii F0264]
 gi|261747060|gb|EEY34556.1| type III restriction-modification system EcoPI, modification
           subunit [Leptotrichia goodfellowii F0264]
          Length = 682

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 51/139 (36%), Gaps = 21/139 (15%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
            +    I E+       ++  I+G+++ VL+ L      ++ +I+ DPPYN   N  +Y 
Sbjct: 74  NRTLKYIPEDSKDADTTQNLYIEGDNLEVLKLLRQNYYGAIKMIYIDPPYNTG-NDFIYN 132

Query: 60  PDHSLVDAVTDSWDKFSSFE-----------------AYDAFTRAWLLACRRVLKPNGTL 102
            + S+    ++  +   S +                  +       L   R +L  +G +
Sbjct: 133 DNFSMSKEESEKVENRLSEDGERLQKNPKEGNSKYHTKWLNMMYPRLKVARDLLTDDGVI 192

Query: 103 WVIGSYHNIFRIGTMLQNL 121
           ++    +    +  +   +
Sbjct: 193 FISIDDNEQANLKKICDEI 211



 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 39/120 (32%), Gaps = 27/120 (22%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGI--- 251
           +++    KP  LL  +    TK    ILD F GS T+     KL       R +I +   
Sbjct: 425 KRIFSNPKPINLLKDLFSIGTKEDSTILDFFSGSATTAHAVMKLNSEDNGNRKYIMVQLP 484

Query: 252 ----EMKQDY-------IDIATKRIASVQPLGNIELTVLTGK-------RTEPRVAFNLL 293
               E  + +        +I  +RI         E+             +  P + F + 
Sbjct: 485 EETDEKSEAFKAGYKNICEIGKERIRRAGDKIKEEIEKENSNLKLGEEPKKVPDIGFKVF 544


>gi|325528070|gb|EGD05282.1| adenine-specific DNA modification methyltransferase [Burkholderia
           sp. TJI49]
          Length = 867

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 10/71 (14%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
            KP AL   ++   + PGD++LDPF G+GT    A ++ R   GI++          R+ 
Sbjct: 531 MKP-ALAHHLVRCFSAPGDLVLDPFSGAGTIPFEACRMGRRGYGIDIS---------RLG 580

Query: 267 SVQPLGNIELT 277
            V  L  +  T
Sbjct: 581 HVLTLAKVAKT 591


>gi|256819524|ref|YP_003140803.1| DNA methylase N-4/N-6 domain-containing protein [Capnocytophaga
           ochracea DSM 7271]
 gi|256581107|gb|ACU92242.1| DNA methylase N-4/N-6 domain protein [Capnocytophaga ochracea DSM
           7271]
          Length = 528

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 11/92 (11%)

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSST---------K 222
             E +    +W +      E    K   +LHP +      L+   L   T         K
Sbjct: 70  WKEKLGDDLNWSLSFEQYKEAETTKHVHRLHPYKGKFIPQLVEYFLDGHTDAFKKEVFFK 129

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            GDI+LDPF GSGT+   A +L    IGI++ 
Sbjct: 130 AGDIVLDPFSGSGTTMVQASELGMHAIGIDVS 161


>gi|220919084|ref|YP_002494388.1| DNA methylase N-4/N-6 domain protein [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219956938|gb|ACL67322.1| DNA methylase N-4/N-6 domain protein [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 520

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 87/256 (33%), Gaps = 19/256 (7%)

Query: 50  NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
           N +L+  L      L DA     D   S++A+    +A      R    +      G Y 
Sbjct: 147 NQELSQSLMEEFRRLKDAAKTQDDLAKSWKAFLKDNKASFERLGRYTAVD----ERGPYQ 202

Query: 110 NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
             +R+         + +   V +K   +P+   R  ++  + LI        K +     
Sbjct: 203 VGYRVHNTHPAGYRYDIIHPVTKKPCRIPSNGYRYTESTMKRLIDEGRIIFGKTHEQIVQ 262

Query: 170 ALKAANEDVQM-RSDWLIPICSGSERLRNKDGEKL--HPTQKPEALLSRILVSSTKPGDI 226
                +E     RS   +    G+  L+   G+K       KP  L+  ++ ++     +
Sbjct: 263 MKDYLDEYRDTLRSVVSLDARKGAYTLKALFGDKFDGFDYPKPVELIELLVGAAGGKDAL 322

Query: 227 ILDPFFGSGTSGAVAKKLR------RSFIGIE----MKQDYIDIATKRIASVQPLGNI-- 274
           +LD F GSGT+     +L       R FI IE      +    +   R+       ++  
Sbjct: 323 VLDAFAGSGTTAHAVMRLNKIDGGRRRFILIEEGNGKDRYARTLIVPRLRKAAKRDDLKC 382

Query: 275 ELTVLTGKRTEPRVAF 290
           +   L   R   R A 
Sbjct: 383 DFRFLKTGRELDRDAI 398



 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 7/125 (5%)

Query: 39  SVDLIFADPPYNLQLNG------QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLAC 92
           SVD+ + DPPYN   N       + + P+    DA   S +       +  +    L   
Sbjct: 11  SVDVAYIDPPYNRGGNDFRYSDARYHDPNAEGKDAEYVSNEDGGRHTKWLNYMAPRLAMI 70

Query: 93  RRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL 152
           R ++K  G ++V  +   +FR+G ++  + F   N I         +    R    HE +
Sbjct: 71  RELMKDTGVIFVSINDIELFRLGMLMDEI-FDEKNRIGIVCWKGSADNNPSRIAIEHEYV 129

Query: 153 IWASP 157
           +  + 
Sbjct: 130 LCYAK 134


>gi|14590866|ref|NP_142938.1| hypothetical protein PH1028 [Pyrococcus horikoshii OT3]
 gi|3257442|dbj|BAA30125.1| 281aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 281

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 44/114 (38%), Gaps = 28/114 (24%)

Query: 8   AINENQNSIFEW-KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
            IN     +FE  K KI++G+S  +++K   +S D+I  DPP    L G+LY        
Sbjct: 164 KINPWSRELFESPKIKILQGDSFDLIKKFEDESFDVIIHDPP-RFSLAGELY-------- 214

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
                             +  + +   RVLKP G L+           G  LQ 
Sbjct: 215 ------------------SEEFYMEMFRVLKPGGRLFHYVGNPGKRYRGLDLQK 250



 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 45/118 (38%), Gaps = 8/118 (6%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST---KPGDIILDPFFGSGTSGAVA 241
              +          +G ++H T+  + L   I   +T   + G+++LD   G G +   +
Sbjct: 84  FYKLVPTIPPTIEINGIRMHRTKGTDPLKDTIAKVNTVKPREGEVVLDTCMGLGYTAIES 143

Query: 242 KKLRRSFIGIEMKQDYIDIAT-----KRIASVQPLGNIELTVLTGKRTEPRVAFNLLV 294
            K     I IE   + I++A      + +     +  ++       +     +F++++
Sbjct: 144 AKRGARVITIEKDPNVIELAKINPWSRELFESPKIKILQGDSFDLIKKFEDESFDVII 201


>gi|227508919|ref|ZP_03938968.1| possible type III modification methyltransferase [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
 gi|227191596|gb|EEI71663.1| possible type III modification methyltransferase [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
          Length = 256

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYIDIATKRI 265
           ++S ++        ++LD F GSGT+      L       R FI IEM+     +  +R+
Sbjct: 1   MISYLIDLIKNKNAVVLDSFAGSGTTAEAVLNLNKRDGGERRFILIEMEDYAESVTAERV 60

Query: 266 ASV 268
             V
Sbjct: 61  KKV 63


>gi|240949870|ref|ZP_04754195.1| ribosomal protein L11 methyltransferase [Actinobacillus minor
           NM305]
 gi|240295687|gb|EER46392.1| ribosomal protein L11 methyltransferase [Actinobacillus minor
           NM305]
          Length = 294

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 59/167 (35%), Gaps = 12/167 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    AL  + 
Sbjct: 95  WEREWMDNFHPMQFGKRLWICPSWREVPDPNAVNVMLDPGLAFGTGTHPTT---ALCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG     A KL  +  IGI++    I  +T    + +  G  +
Sbjct: 152 LDSLDLAGKTVIDFGCGSGILAIAALKLGAKRAIGIDIDPQAILASTN---NAEANGVAD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
              L   + +P+     +V   ++     L     NI   V   G L
Sbjct: 209 RLELFLAKDQPKDLLADVVVANIL--AGPLKELAPNIITLVKPQGDL 253


>gi|14521158|ref|NP_126633.1| hypothetical protein PAB1736 [Pyrococcus abyssi GE5]
 gi|5458376|emb|CAB49864.1| Predicted archaeal methyltransferase [Pyrococcus abyssi GE5]
          Length = 285

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 29/122 (23%)

Query: 8   AINENQNSIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
            IN     +FEW + K+I G+S  +++    +S D+I  DPP    L G+LY        
Sbjct: 165 KINPWSRELFEWPNIKVIHGDSYELVKNFDNESFDVIIHDPP-RFSLAGELY-------- 215

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNLNFWI 125
                             +R +     R+LKP G L+  +G+    +R   M + +   +
Sbjct: 216 ------------------SREFYEELYRILKPGGRLFHYVGNPGKKYRRKDMQRGVMERL 257

Query: 126 LN 127
            +
Sbjct: 258 RS 259


>gi|53729200|ref|ZP_00134051.2| COG2189: Adenine specific DNA methylase Mod [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 992

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 6/95 (6%)

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
                  P  +G+  L+   G  +    K    +   +  ++K  D ILD F GSGT+  
Sbjct: 684 WIDKKYYPEFNGTNLLKGILGNSIFSYPKSIYAVQDYIKITSKKDDYILDYFAGSGTTAH 743

Query: 240 VAKKL------RRSFIGIEMKQDYIDIATKRIASV 268
               L       R +I +E  + +  +   R+  V
Sbjct: 744 AVINLNREDGGNRKYILVEQGEYFDTVLKPRVQKV 778



 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 62/179 (34%), Gaps = 26/179 (14%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLV 65
           ++E  N +      +I  ++   L  L     + V  I+ DPPYN   +  +Y+  +   
Sbjct: 424 LDEKTNGL------LIHSDNFQALNLLQEKYKEQVKCIYIDPPYNTNASEIIYKNGYK-- 475

Query: 66  DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML-QNLNFW 124
                         ++++     +   R++L   G       Y  +F  G +L +     
Sbjct: 476 ------------HSSWNSLIENRVSLSRKLLSNEGFFAGTIDYAELFSFGKILDEEFGEL 523

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
               IV    NP      R F  + E +I  +PSP +    FN   + A         D
Sbjct: 524 SRVGIVSILINPKGRQHERFFSASSEYMIVYTPSPNSAR--FNQTTIDAEKRKTFNLFD 580


>gi|315651941|ref|ZP_07904943.1| type III restriction-modification system [Eubacterium saburreum DSM
           3986]
 gi|315485770|gb|EFU76150.1| type III restriction-modification system [Eubacterium saburreum DSM
           3986]
          Length = 574

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 59/165 (35%), Gaps = 26/165 (15%)

Query: 20  KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQ-----------------LNGQLYR 59
           K+  I+G+++ VL+ L       V +I+ DPPYN                        Y 
Sbjct: 49  KNLYIEGDNLEVLKLLQESYLGKVKMIYIDPPYNTGNDFIYNDDFKVNTEEYAKESGEYS 108

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
              + +   TDS  +F S   + +   + +L  R +L  +G + V         +  +  
Sbjct: 109 DSGNRMFRNTDSNGRFHS--DWCSMIYSRILIARNLLTNDGIIMVSIDEREYANVRKICD 166

Query: 120 NLN--FWILNDIVWRKSN-PMPNFRGRRF-QNAHETLIWASPSPK 160
            +        DIVW  +  P+     R   Q   E+++    +  
Sbjct: 167 EIFGEKNYFGDIVWEATTQPINTGVARFGLQKKTESILMYGKNKN 211



 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 21/85 (24%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGI------ 251
             T K  +L+ ++L        I+LD F GS T+     +L       R FI +      
Sbjct: 339 FDTVKSISLMKKLLSYMGDNY-IVLDFFSGSATTAHAVMQLNAEDGGHRKFIMVQLPEAT 397

Query: 252 -EMKQDY-------IDIATKRIASV 268
            E  + Y        +I  +RI   
Sbjct: 398 DEKSEAYKAGYKNICEIGKERIRRA 422


>gi|332797437|ref|YP_004458937.1| Cytosine methylase [Acidianus hospitalis W1]
 gi|332695172|gb|AEE94639.1| Cytosine methylase [Acidianus hospitalis W1]
          Length = 403

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 28/52 (53%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +P +    ++   + + TKPG+ + DPF GSGT    A+   R++I  ++  
Sbjct: 36  YPAKFIPNVVRYFIEAYTKPGETLFDPFAGSGTVAIEAEITGRNYILWDLNP 87


>gi|295106973|emb|CBL04516.1| DNA methylase. [Gordonibacter pamelaeae 7-10-1-b]
          Length = 115

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 184 WLIPICSGSERL------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           W   +     R+      +++   ++H       ++ R++   + PG+++ DPF G  T 
Sbjct: 8   WHPEVWDDVSRMLTLNTEQSRGRRQMHVCPLQFDIVDRLVERYSNPGELVYDPFAGLMTV 67

Query: 238 GAVAKKLRRSFIGIEMKQDY 257
              A KL R   G+E+   Y
Sbjct: 68  PLRALKLGRRGRGVELNAGY 87


>gi|210620629|ref|ZP_03292153.1| hypothetical protein CLOHIR_00096 [Clostridium hiranonis DSM 13275]
 gi|210155238|gb|EEA86244.1| hypothetical protein CLOHIR_00096 [Clostridium hiranonis DSM 13275]
          Length = 243

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 5/92 (5%)

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
            + +N  ++  + W+ P          K      P      +   +++  +K GD+ILD 
Sbjct: 4   WEPSNFKLETGTVWIFPERGSWATHTPKYRGNFSPY-----VPRNLILRYSKKGDMILDQ 58

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           F G GT+   AK L R+ IG+++    + +  
Sbjct: 59  FAGGGTTLIEAKLLGRNIIGVDVNIQALALCR 90



 Score = 42.3 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 50/132 (37%), Gaps = 23/132 (17%)

Query: 17  FEWKD--KII--KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           FE+K+  K+   +G++ + L  +P + +D I   PPY   +          +V+ ++   
Sbjct: 95  FEYKNSSKVYLRRGDARN-LNFIPDEKIDFICTHPPYADAIKY-----SKDIVEDIS--- 145

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNI-------FRIGTMLQNLNFW 124
                ++++            RVLK       ++G            F +  + +N+ F 
Sbjct: 146 --LLDYKSFLKEMEKVAKESYRVLKKGKYCAILMGDIRKNGNVIPLGFEVMNIFKNVGFI 203

Query: 125 ILNDIVWRKSNP 136
               I+  + N 
Sbjct: 204 NKEIIIKEQYNC 215


>gi|15341560|gb|AAK95338.1| type III restriction-modification system methyltransferase
           [Moraxella catarrhalis]
          Length = 636

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 6/137 (4%)

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
           ++  ++ + +      T+  +  +          + +      +E      G+ +    K
Sbjct: 356 YQEALYFNKNGGVDRKTYLSEVRQGVTCGTLWSYEDVGHSHGNNEEFSEIIGKGIFNDPK 415

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYIDIAT 262
              LL RI+  ++    IILD F GS T+     +L       R FI +++ +   + + 
Sbjct: 416 GTKLLKRIISLNSDKNSIILDFFAGSATTAHAVMQLNAEDNGNRQFIMVQLPELTDEKSE 475

Query: 263 KRIASVQPLGNIELTVL 279
            R A  + +  I    +
Sbjct: 476 ARKAGFKNIAEISKERI 492



 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 52/162 (32%), Gaps = 25/162 (15%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLN------------------GQLY 58
           ++  I+ +++ VL+ L    A  + +I+ DPPYN   +                  G   
Sbjct: 121 QNIFIESDNLEVLKILQKSYAGKIKMIYIDPPYNTGNDFIYHDDFSQSKKDYEIATGDRD 180

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
                L     +S D       +       L     +L  +G +++    +   ++  + 
Sbjct: 181 MNGQLLKSFKKNSKDNGHYHSNWLNMMLPRLHLAHTLLSDDGVIFISIDDNEQAQLKLLC 240

Query: 119 QNL--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
             +      + D +W     + N         HE ++    +
Sbjct: 241 DEIFGGENFVADFIWNNKYTVSNDTD--VSYQHEHIVCFCKN 280


>gi|326570779|gb|EGE20804.1| type III restriction-modification system restriction endonuclease
           [Moraxella catarrhalis BC1]
          Length = 527

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 63/212 (29%), Gaps = 26/212 (12%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLN------------------GQLY 58
           ++  I+ +++  L+ L    A  + +I+ DPPYN   +                  G   
Sbjct: 7   QNIFIESDNLEALKILQKSYAGKIKMIYIDPPYNTGNDFIYHDDFSQPKKDYEIATGDRD 66

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
                L     +S D       +       L     +L  +G +++    +   ++  + 
Sbjct: 67  MNGQLLKSFKKNSKDNGHYHSNWLNMMLPRLHLAHTLLSDDGVIFISIDDNEQAQLKLLC 126

Query: 119 QNL--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG---YTFNYDALKA 173
             +      + DI+W  +  + N       + H  + +       K    +    D    
Sbjct: 127 DEIFGGENFVADIIWNSTKSVTNTALISVSHTHNLVYFKDIDYFIKNRELFRLKDDGDGF 186

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
            N D   R  W            N+     +P
Sbjct: 187 ENPDNDPRGAWKADPFQVGGWRPNQQYIITNP 218



 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 69/224 (30%), Gaps = 35/224 (15%)

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           F+  D F +       R+           +           Q   +      +    N  
Sbjct: 164 FKDIDYFIKNR--ELFRLKDDGDGFENPDNDPRGAWKADPFQVGGWRPNQQYIITNPNTG 221

Query: 138 PNFR---GRRFQNAHE---------TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
             +    G  ++N +E          +++      A          +   +  +   D +
Sbjct: 222 VEYAPNEGSSWKNDYEKFQELLKDNRIVFGKNGTSAPQRKRFIWEAQERGKVAKTLWDDV 281

Query: 186 IPICSGSERLRNKDGEK-LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
               +G++ L+    EK      KP +L+ R+L   +    IILD F GS T+     +L
Sbjct: 282 ETTTNGTQLLKRLFNEKSFFDNPKPISLIKRMLELGSDNKSIILDFFAGSATTAHAVMQL 341

Query: 245 ------RRSFIGI-------EMKQDYI-------DIATKRIASV 268
                  R FI +       E  + Y        +I+ +RI   
Sbjct: 342 NTEDNGNRQFIMVQLPELTDEKSEAYKAGFKTISEISKERIRRA 385


>gi|332673101|gb|AEE69918.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori 83]
          Length = 384

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 50/134 (37%), Gaps = 17/134 (12%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
             ++  L+++  +S+  I+ DPPYN + +   Y   H+                 Y+ + 
Sbjct: 1   MEALECLKRIEKESIQTIYIDPPYNTKSSNFEYEDAHA----------------DYEKWI 44

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
              L+  + VLK +G +++    + +  +  +   +     N +    +        +  
Sbjct: 45  EEHLILAKAVLKQSGCIFISIDDNKMAEVKIIANEIFGT-HNFLGTFITKQATRSNAKHI 103

Query: 146 QNAHETLIWASPSP 159
              HE ++  + + 
Sbjct: 104 NITHEYVLSYAKNK 117



 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 11/107 (10%)

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           L + +         +    LK + ++     D+      G++ L     + L  T KP A
Sbjct: 229 LHYQNRLIFKNNRPYEKYYLKESQDNCLSVLDFY--SRQGTKDLEKLGLKGLFKTPKPVA 286

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           L+  +L+ ST    IILD F GSGT+             IE+ +DY 
Sbjct: 287 LIKYLLLCSTPKDSIILDFFAGSGTTAQAV---------IEVNKDYY 324


>gi|313145659|ref|ZP_07807852.1| type III restriction-modification system [Bacteroides fragilis
           3_1_12]
 gi|313134426|gb|EFR51786.1| type III restriction-modification system [Bacteroides fragilis
           3_1_12]
          Length = 608

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 58/163 (35%), Gaps = 23/163 (14%)

Query: 24  IKGNSISVLEKLP---AKSVDLIFADPPYNLQLN-----------------GQLYRPDHS 63
           I+G+++  ++ L    A  VD+I+ DPPYN   +                    Y  +  
Sbjct: 51  IEGDNLDAMKLLKKSYAGKVDVIYIDPPYNTGKDFIFNDTFALSQEESDEKQGRYNEEGQ 110

Query: 64  LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
            +   T++  KF S   + +   A L+    +L  NG +++    H +  +  +   +  
Sbjct: 111 RLFQNTEANGKFHS--DWCSMMYARLMLAHTLLNDNGIIFISIDDHELANLIKIGNEVFN 168

Query: 124 WILNDIVWRKSNP-MPNFRGRRFQNAHETLIWASPSPKAKGYT 165
                 V+  +    P    ++ +   E ++          + 
Sbjct: 169 ASNFIDVFNWAKTETPENLSKKSKQIIEYIVCYQKKKNDMKFQ 211



 Score = 43.1 bits (100), Expect = 0.072,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 9/72 (12%)

Query: 201 EKLHPTQKPEALLSRILV--SSTKPGDIILDPFFGSGTSGAVAKKLR---R----SFIGI 251
           +K+    KP +L+  +     +     I++D F GSGT+     ++    R     +I +
Sbjct: 348 KKVFNFPKPVSLIQYLCEFIDTKNKDCIVMDFFSGSGTTAEAVMRMNMKPRKNKVKYILV 407

Query: 252 EMKQDYIDIATK 263
           ++ +D  +   K
Sbjct: 408 QLPEDVTETIKK 419


>gi|146328664|ref|YP_001209666.1| hypothetical protein DNO_0762 [Dichelobacter nodosus VCS1703A]
 gi|146232134|gb|ABQ13112.1| hypothetical protein DNO_0762 [Dichelobacter nodosus VCS1703A]
          Length = 187

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 71/228 (31%), Gaps = 47/228 (20%)

Query: 42  LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
           +IF DPP+++   G+L++   +              FE                      
Sbjct: 1   MIFTDPPFDMG-AGKLHKILSNYQ------------FE---------------------H 26

Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
           L +I S   +  +   L         D+V  +S P  +         H  + +       
Sbjct: 27  LVLIASMRQVLELYPKLD---MDFCFDLVANRSKPKESRSYAMPHYLHNNIFYFKKHGVK 83

Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
             +     A      D +                  +D    +  QK + ++  I+ +  
Sbjct: 84  SAFDRRLVARADQYSDTKTH------YYPTFFDAPKRDIVYRY--QKNQQMIDDIIGA-- 133

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
                + D F GSGT+G    K  +    IE + +  +I  +++  +Q
Sbjct: 134 FNVSTVCDMFAGSGTTGLACVKHEKDCTLIEAETEPFNIMKQQLDFLQ 181


>gi|99908362|gb|ABF68766.1| Mod [Arcanobacterium pyogenes]
          Length = 510

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 53/147 (36%), Gaps = 12/147 (8%)

Query: 24  IKGNSISVLEKLP---AKSVDLIFADPPYNLQ----LNGQLYRPDHSLVDAVT----DSW 72
           I+G+++ VL+ L       + +++ DPPYN         +      + ++        + 
Sbjct: 1   IEGDNLEVLKLLQRGYHGKIKMVYIDPPYNTGHDFVYKDRFGDTLENYIEQAGLMGQSNA 60

Query: 73  DKFSSFEA-YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           D   S+ A + +     L   R +L  +G ++V    + +  +  ++  +        + 
Sbjct: 61  DTSGSYHANWCSMMYPRLRLARELLADDGAIFVSIDDNEVTNLTKLMDEIFGERNRIALI 120

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPS 158
                      +     H T+ + + +
Sbjct: 121 CHKARASVSNDKIISPNHNTIAFYAKN 147



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 39/117 (33%), Gaps = 3/117 (2%)

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
               F     Q  +E  +       +    +   A K     V    D      + + RL
Sbjct: 203 GYWRFSKETMQKKYEEGL-VVKRGNSLYQKYYQSAAKQTRRTVTTWWDDAGLTSTATSRL 261

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGD--IILDPFFGSGTSGAVAKKLRRSFIG 250
           +   G     T KP  LL R+L   T   D  I++D F GS T       + R + G
Sbjct: 262 KELMGGATFDTPKPIELLERMLKMITFSSDDCIVMDFFSGSATLAHAVMNINREYGG 318


>gi|311748219|ref|ZP_07722004.1| putative type II R/M system [Algoriphagus sp. PR1]
 gi|126576709|gb|EAZ80957.1| putative type II R/M system [Algoriphagus sp. PR1]
          Length = 417

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            P +L S  +   T  GD++ DPF G GT+   A+ L R  +  ++    I +A     S
Sbjct: 29  FPPSLASYFIRFFTDEGDLVYDPFSGRGTTILEARILNRKSVASDLNP--IALALSHAKS 86

Query: 268 VQ 269
           VQ
Sbjct: 87  VQ 88



 Score = 40.4 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 12/115 (10%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISV-----LEKLPAKSVDLIFADPPYNLQLNGQLY 58
           +  +     +++    +  I + ++ ++      +KL  K VDLI   PPY   +N    
Sbjct: 208 REKIKRTFEKHTFPRSQSSIYRSDAKTLSSTPEFKKLKGK-VDLILTSPPYLGIVNYARQ 266

Query: 59  RPDHSLV-----DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT-LWVIGS 107
               S       + +++  D   +   +  F++  +   +++LKPNG  ++VIG 
Sbjct: 267 NWIRSWFLDANPELISEELDDDLNLFEWIKFSKDTVSQFKKLLKPNGVGVFVIGD 321


>gi|330892363|gb|EGH25024.1| site-specific DNA-methyltransferase (adenine-specific) [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 358

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 9/104 (8%)

Query: 199 DGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGI----E 252
           DGE    T KP  L+ R++ VS    GDI+LD F GSGT+GA      +  FI +    E
Sbjct: 118 DGEVPFDTVKPTELIKRMMKVSGVNEGDIVLDFFAGSGTTGAAVFDTEQSRFILVQLPEE 177

Query: 253 MKQDYIDIATKR---IASVQPLGNIELTVLTGKRTEPRVAFNLL 293
           + +      T R   ++ +  +    L   +  ++     F + 
Sbjct: 178 IDESKPHGITARKLGLSKISDVTKERLKRCSANKSPANAGFKVF 221


>gi|166365955|ref|YP_001658228.1| hypothetical protein MAE_32140 [Microcystis aeruginosa NIES-843]
 gi|166088328|dbj|BAG03036.1| unknown protein [Microcystis aeruginosa NIES-843]
          Length = 770

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 32/69 (46%)

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           PI    +      G   + T++   ++   +   ++ GD++LDPF GSG +   A  L+R
Sbjct: 8   PIDPKKQGTLRHWGSHPYFTRRAWNVVQEYIKRFSQVGDVVLDPFGGSGVTAVEALVLKR 67

Query: 247 SFIGIEMKQ 255
             I  ++  
Sbjct: 68  KAIYSDINP 76



 Score = 43.8 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 40/126 (31%), Gaps = 14/126 (11%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNG-----------QLYRPDHSLVDAVTDSWDKFSSFEA 80
           L  + ++SVD I+ DPPY   +                  D++      +  D   S E 
Sbjct: 263 LTGISSESVDYIYTDPPYGQHIAYLDLSTMWNAWLGFEVSDNARELEAIEGGDLKKSKET 322

Query: 81  YDAFTRAWLLACRRVLKPN---GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           Y       +    RVLK +     ++          I    Q   F  +N  V   + P 
Sbjct: 323 YINLLSNSIREMFRVLKFDRWMSIVFAHKDPAYWDAIVKSAQEAGFEYVNSSVQHSTTPS 382

Query: 138 PNFRGR 143
            + +  
Sbjct: 383 LHKKKN 388


>gi|290967976|ref|ZP_06559525.1| methyltransferase domain protein [Megasphaera genomosp. type_1 str.
           28L]
 gi|290781882|gb|EFD94461.1| methyltransferase domain protein [Megasphaera genomosp. type_1 str.
           28L]
          Length = 248

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 190 SGSERLRNKDGEKLHPTQKP----EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +       +     H  +        +   IL+  ++  D++LD F G GT+   AK L 
Sbjct: 18  TTHWSFPKRGDWATHDAKWRGNWSPYIPRNILLRYSEENDLVLDQFAGGGTTLVEAKLLN 77

Query: 246 RSFIGIEMKQDYIDIATKRI 265
           R+ IG+++ +  +    ++I
Sbjct: 78  RNIIGVDVNETALARCREKI 97



 Score = 43.4 bits (101), Expect = 0.052,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 47/141 (33%), Gaps = 23/141 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF--EA 80
           + KG++ + L+ +   S+DLI   PPY              ++    D     S    + 
Sbjct: 110 LYKGDART-LDFIKDNSIDLICTHPPY------------ADIIKYSEDIEADLSHLKVKD 156

Query: 81  YDAFTRAWLLACRRVLKPNGTL-WVIGSYHNI-------FRIGTMLQNLNFWILNDIVWR 132
           +    R       RVLK +     ++G            F +  + Q+  F +   ++  
Sbjct: 157 FLIAMRDVAAESYRVLKKDKFCAVLMGDTRQKGHMIPMSFEVMKLFQSAGFKLKELVIKE 216

Query: 133 KSNPMPNFRGRRFQNAHETLI 153
           + N       +     +  L+
Sbjct: 217 QHNCKATGYWKTNSVKYNFLL 237


>gi|110798791|ref|YP_694818.1| type III restriction-modification system, Mod subunit [Clostridium
           perfringens ATCC 13124]
 gi|110673438|gb|ABG82425.1| type III restriction-modification system, Mod subunit [Clostridium
           perfringens ATCC 13124]
          Length = 683

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 62/177 (35%), Gaps = 19/177 (10%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN---GQL 57
           K    ++E+       ++  I+G+++ VL+ L       + +I+ DPPYN + +      
Sbjct: 85  KTLKYVSEDSKDSETTQNLYIEGDNLEVLKLLRNSYYGKIKMIYIDPPYNTENDFIYKDN 144

Query: 58  YRPDHSLVDAVTDSWDKFSS------------FEAYDAFTRAWLLACRRVLKPNGTLWVI 105
           ++ D    + +  S D+++                +       L   + +L  +G + + 
Sbjct: 145 FKIDKEKYEKLEGSIDEYNERLTASKKGSGRYHSDWMNMIYPRLKVAKDLLSDDGVILIS 204

Query: 106 GSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
              + +  +  +   +         +  +     +F  +   N  E ++  S     
Sbjct: 205 IDDNEVVNLKKICDEIFGEENFIANLVWEKKKKGSFLAKSITNIKEHILVFSKVKDY 261



 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 20/95 (21%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGI-------EM 253
            KP  L+ +I+ S  K   IILD F GS T+     +L       R FI +       E 
Sbjct: 426 PKPTKLIMKIIASYRKKEFIILDFFSGSATTADAVMQLNSEDNGNRKFIMVQLPELCNEK 485

Query: 254 KQDY-------IDIATKRIASVQPLGNIELTVLTG 281
            + Y        +I  +RI         E     G
Sbjct: 486 SEAYKNGYKNICEIGKERIRRAGEKIKEENKDKEG 520


>gi|153875886|ref|ZP_02003483.1| hypothetical protein BGP_0876 [Beggiatoa sp. PS]
 gi|152067647|gb|EDN66514.1| hypothetical protein BGP_0876 [Beggiatoa sp. PS]
          Length = 70

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 25/47 (53%)

Query: 26 GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
          G+ + +L+ +   S+DL++ DPP+  +   +L   D +   +  D W
Sbjct: 10 GDCLELLKPISDASIDLVYLDPPFFTETVQRLKTRDRTQEFSYQDIW 56


>gi|258545973|ref|ZP_05706207.1| probable methylation subunit, type III restriction-modification
           system [Cardiobacterium hominis ATCC 15826]
 gi|258518778|gb|EEV87637.1| probable methylation subunit, type III restriction-modification
           system [Cardiobacterium hominis ATCC 15826]
          Length = 393

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 43/146 (29%), Gaps = 6/146 (4%)

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
           I     N +        Q+               G                      I  
Sbjct: 29  IYPIDGNGIERKWTYARQSVENISHLLKVEKLKNGNYEIKKTRDKERYKTVWDDSKYIAG 88

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR--- 245
             GS+ L N  G K     K    +   ++ S+K  D ILD F GSGT+      L    
Sbjct: 89  DYGSKILNNIIGSKKFDFPKSLYTVLDSILLSSKKYDTILDYFAGSGTTAHAVINLNRED 148

Query: 246 ---RSFIGIEMKQDYIDIATKRIASV 268
              R +I +E  + +  +   R+  V
Sbjct: 149 DGKRKYILVEQAEYFNTVLKPRVQKV 174


>gi|319757915|gb|ADV69857.1| hypothetical protein SSUJS14_0770 [Streptococcus suis JS14]
          Length = 133

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 21/111 (18%)

Query: 17  FEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
            + ++  I G+++ VL+ L       +D+I+ DPPYN   +           + + D  D
Sbjct: 23  DKSENVFITGDNLEVLKVLQESYLGKIDMIYIDPPYNTGKDFVYSDKFQMSEEELADEMD 82

Query: 74  KFSS------------------FEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
                                    +     + L+  R +LK +G ++ + 
Sbjct: 83  LRDEDGLQRVGLTKNEKSSARYHSDWLNMMYSRLVLARNLLKDSGVIFNLH 133


>gi|146318336|ref|YP_001198048.1| hypothetical protein SSU05_0682 [Streptococcus suis 05ZYH33]
 gi|146320530|ref|YP_001200241.1| hypothetical protein SSU98_0683 [Streptococcus suis 98HAH33]
 gi|145689142|gb|ABP89648.1| hypothetical protein SSU05_0682 [Streptococcus suis 05ZYH33]
 gi|145691336|gb|ABP91841.1| hypothetical protein SSU98_0683 [Streptococcus suis 98HAH33]
 gi|292558129|gb|ADE31130.1| hypothetical protein SSGZ1_0671 [Streptococcus suis GZ1]
          Length = 134

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 21/111 (18%)

Query: 17  FEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
            + ++  I G+++ VL+ L       +D+I+ DPPYN   +           + + D  D
Sbjct: 24  DKSENVFITGDNLEVLKVLQESYLGKIDMIYIDPPYNTGKDFVYSDKFQMSEEELADEMD 83

Query: 74  KFSS------------------FEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
                                    +     + L+  R +LK +G ++ + 
Sbjct: 84  LRDEDGLQRVGLTKNEKSSARYHSDWLNMMYSRLVLARNLLKDSGVIFNLH 134


>gi|153870329|ref|ZP_01999753.1| DNA methylase [Beggiatoa sp. PS]
 gi|152073202|gb|EDN70244.1| DNA methylase [Beggiatoa sp. PS]
          Length = 725

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 56/183 (30%), Gaps = 18/183 (9%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYN--LQLNGQLYRPDHSLVDAVTDSWDKF----- 75
           I+ G+S ++   LP  SVD I  DPPY   +  +         L  A+ D++D F     
Sbjct: 464 IMNGDSATL--PLPNNSVDAIVTDPPYFDLIHYSELSDFFYAWLQLALKDTYDYFNQETS 521

Query: 76  --------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
                    + + + A        C RVLK NG L V   +H + +    +         
Sbjct: 522 SHSGEVQNRNPDKFMAQLTRVFSECFRVLKENG-LMVFSFHHLLPQAWLSIYQALTQSQF 580

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
            IV            +   N    +   +     K    +       ++           
Sbjct: 581 VIVAAYPVKAEMLGNKVKPNVKTAIYIDAIMVCKKQPQSDKPKYSELDDLWLQAKKTYHT 640

Query: 188 ICS 190
            C 
Sbjct: 641 YCK 643



 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 20/43 (46%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           ILDPF GSGT+     KL    IG +       I  + +  V+
Sbjct: 75  ILDPFMGSGTTLGECAKLGIKIIGCDTNPVSTFIVRQALTRVK 117


>gi|326576839|gb|EGE26746.1| type III restriction-modification system restriction endonuclease
           [Moraxella catarrhalis 101P30B1]
          Length = 527

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 63/212 (29%), Gaps = 26/212 (12%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLN------------------GQLY 58
           ++  I+ +++  L+ L    A  + +I+ DPPYN   +                  G   
Sbjct: 7   QNIFIESDNLEALKILQKSYAGKIKMIYIDPPYNTGNDFIYHDDFSQPKKDYEIATGDRD 66

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
                L     +S D       +       L     +L  +G +++    +   ++  + 
Sbjct: 67  MNGQLLKSFKKNSKDNGHYHSNWLNMMLPRLHLAHTLLSDDGVIFISIDDNEQAQLKLLC 126

Query: 119 QNL--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG---YTFNYDALKA 173
             +      + DI+W  +  + N       + H  + +       K    +    D    
Sbjct: 127 DEIFGGENFVADIIWNSTKSVTNTALISVSHTHNLVYFKDIGYFIKNRELFRLKDDGDGF 186

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
            N D   R  W            N+     +P
Sbjct: 187 ENPDNDPRGAWKADPFQVGGWRPNQQYIITNP 218



 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 61/184 (33%), Gaps = 33/184 (17%)

Query: 118 LQNLNFWILNDIVWRKSNPMPNFR---GRRFQNAHE---------TLIWASPSPKAKGYT 165
            Q   +      +    N    +    G  ++N +E          +++      A    
Sbjct: 202 FQVGGWRPNQQYIITNPNTGVEYAPNEGSSWKNDYEKFQELLKDNRIVFGKNGTSAPQRK 261

Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK-LHPTQKPEALLSRILVSSTKPG 224
                 +   +  +   D +    +G++ L+    EK      KP +L+ R+L   +   
Sbjct: 262 RFIWEAQERGKVAKTLWDDVETTTNGTQLLKRLFNEKSFFDNPKPISLIKRMLELGSDNK 321

Query: 225 DIILDPFFGSGTSGAVAKKL------RRSFIGI-------EMKQDYI-------DIATKR 264
            IILD F GS T+     +L       R FI +       E  + Y        DI+ +R
Sbjct: 322 SIILDFFAGSATTAHAVMQLNAEDNGNRQFIMVQLPELTDEKSEAYKAGFKTISDISKER 381

Query: 265 IASV 268
           I   
Sbjct: 382 IRRA 385


>gi|291280689|ref|YP_003497523.1| site-specific DNA-methyltransferase [Deferribacter desulfuricans
           SSM1]
 gi|290755391|dbj|BAI81767.1| site-specific DNA-methyltransferase [Deferribacter desulfuricans
           SSM1]
          Length = 404

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%)

Query: 185 LIPICSGSERLRNKDGE-KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           +    S S R+ +K  +   +    P  L   I+ + +K GDI+ DPF G GT+   A +
Sbjct: 5   VYDYKSISGRVFSKMHQMTTYLAMFPPTLPYVIIKNFSKEGDIVYDPFCGRGTATFEACR 64

Query: 244 LRRSFIGIEMKQDYIDIATK 263
           L R  IG ++      ++  
Sbjct: 65  LGRIGIGNDLNPLAYILSKA 84



 Score = 40.7 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 40/116 (34%), Gaps = 21/116 (18%)

Query: 14  NSIFEWKD-KIIKGNSIS----VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH-SLVDA 67
            S+ ++K  ++   ++I     V  K    SV LI   PPY   +N   Y      L++ 
Sbjct: 221 QSLDKYKQGEVFNTDAIEATKLVKRKFGNNSVQLIITSPPYLKVINYGKYNWIRLWLLNE 280

Query: 68  VTDSWD---------------KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
            T+  D                  + + Y  +      +   +L+  G  +V+   
Sbjct: 281 NTEQVDNRVTLYQRLQNQNLKDNMNLQEYSKYMFKLFNSWEYILRKGGYAFVVMGD 336


>gi|237750642|ref|ZP_04581122.1| DNA methyltransferase [Helicobacter bilis ATCC 43879]
 gi|229373732|gb|EEO24123.1| DNA methyltransferase [Helicobacter bilis ATCC 43879]
          Length = 191

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 1/73 (1%)

Query: 32  LEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
           + K+   SVDLI   PPY N++   +    D     +        S ++ Y         
Sbjct: 12  MSKVSDCSVDLIITSPPYFNIKDYAKNGYQDLIHSHSKKGDLGAISEYKIYIQELLKVWR 71

Query: 91  ACRRVLKPNGTLW 103
            C RVLKPNG L 
Sbjct: 72  ECERVLKPNGKLC 84


>gi|254168498|ref|ZP_04875342.1| DNA methylase domain protein [Aciduliprofundum boonei T469]
 gi|197622553|gb|EDY35124.1| DNA methylase domain protein [Aciduliprofundum boonei T469]
          Length = 1020

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 50/136 (36%), Gaps = 13/136 (9%)

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           RR +N        S + + K YT  Y         + ++         G+  +    G++
Sbjct: 694 RRLRNNEIVFKKDSATGEWKVYTKTYYKGIVRPRSLILKK---GATREGNRDIEKLFGDR 750

Query: 203 LHPTQKPEALLSRILVSSTK----PGDIILDPFFGSGTSGAVAKKLR------RSFIGIE 252
           ++   KP  LL  ++            +ILD F GSGT+      L       R FI +E
Sbjct: 751 IYTYPKPVELLKYLVNIDDSIELSKNKVILDFFAGSGTTAHAVMMLNKEDGGKRKFILVE 810

Query: 253 MKQDYIDIATKRIASV 268
           M   +  +   RI  V
Sbjct: 811 MADYFETVIIPRIKKV 826


>gi|145633548|ref|ZP_01789276.1| predicted methyltransferase [Haemophilus influenzae 3655]
 gi|145635332|ref|ZP_01791035.1| predicted methyltransferase [Haemophilus influenzae PittAA]
 gi|229845728|ref|ZP_04465849.1| 23S rRNA m(2)G2445 methyltransferase [Haemophilus influenzae
           6P18H1]
 gi|144985754|gb|EDJ92368.1| predicted methyltransferase [Haemophilus influenzae 3655]
 gi|145267476|gb|EDK07477.1| predicted methyltransferase [Haemophilus influenzae PittAA]
 gi|229811341|gb|EEP47049.1| 23S rRNA m(2)G2445 methyltransferase [Haemophilus influenzae
           6P18H1]
          Length = 711

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 40/109 (36%), Gaps = 20/109 (18%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N I   + K+I+ + +  LEK   +  DLIFADPP              S    + DSWD
Sbjct: 593 NDIEGKQHKLIQADCLQWLEKC-DRQFDLIFADPP------------TFSNSKRMEDSWD 639

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                          +   +RVL  NGT+    +          L+ L 
Sbjct: 640 VQRDH-------VKLMRNLKRVLSNNGTIVFSNNKRGFKMNLVALEELG 681


>gi|159897657|ref|YP_001543904.1| DNA methylase N-4/N-6 domain-containing protein [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890696|gb|ABX03776.1| DNA methylase N-4/N-6 domain protein [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 251

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 49/143 (34%), Gaps = 24/143 (16%)

Query: 91  ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
           A  R     G LW         R   ++        N        P  +  G R   A E
Sbjct: 127 AATRKYLNQGHLWYF---PPPERFELLVD-----YANSHGVVTGRPYFSIDGSRPATAAE 178

Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
                +      G+T                + W       +ER++   G+ +H  QKP 
Sbjct: 179 WATMRAKFYCPYGFT----------------NVWQRDALRNAERIKTPQGKVIHLNQKPL 222

Query: 211 ALLSRILVSSTKPGDIILDPFFG 233
            L+ RI+ +S+ P D+I +PF G
Sbjct: 223 DLMERIIAASSDPDDVIWEPFGG 245


>gi|237739340|ref|ZP_04569821.1| sensor protein fixL [Fusobacterium sp. 2_1_31]
 gi|229422948|gb|EEO37995.1| sensor protein fixL [Fusobacterium sp. 2_1_31]
          Length = 247

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 190 SGSERLRNKDGEKLHPTQKP----EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +     + +     H  +        +   +++  T+  D+ILD F G GT+   AK L 
Sbjct: 18  NSVWSFKERGDWATHDAKWRGNWSPYIPRNLILRYTQEKDLILDQFAGGGTTLVEAKLLN 77

Query: 246 RSFIGIEMKQDYIDIATKRI 265
           R+ IGI++    I+   ++I
Sbjct: 78  RNIIGIDVNDIAIERCREKI 97


>gi|188532552|ref|YP_001906349.1| Site-specific DNA-methyltransferase (Adenine-specific) [Erwinia
           tasmaniensis Et1/99]
 gi|188027594|emb|CAO95444.1| Site-specific DNA-methyltransferase (Adenine-specific) [Erwinia
           tasmaniensis Et1/99]
          Length = 628

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 57/162 (35%), Gaps = 20/162 (12%)

Query: 17  FEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
              ++ ++ G+++ VL+ L    +  V LIF DPPYN   +          +    +   
Sbjct: 95  ESTQNLMLAGDNLEVLKLLQKSYSGKVKLIFIDPPYNTGKDFVYPDNFQDNIKNYLELTG 154

Query: 74  KFSSFE--------------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
           +  + +               +       +   R +L  +G +++      +  +  +  
Sbjct: 155 QMENGQKLSSNTEASGRFHTDWLNMIYPRIKLARNLLSDDGVMFMSIDDGEVANLRKVCD 214

Query: 120 NLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
            +      + +IVW+K     N     F + H+ ++    + 
Sbjct: 215 EIFGEENFIANIVWQKKYTRSNDAKW-FSDNHDHILAYGKNK 255



 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 8/59 (13%)

Query: 203 LHPTQKPEALLSRILVSST--KPGDIILDPFFGSGTSGAV-----AKKLR-RSFIGIEM 253
           +    KP  LL R++  +T      I+LD F GSGT+        A+    R FI +++
Sbjct: 384 IFDNPKPVRLLQRMIHLATSADRQHIVLDFFAGSGTTAHAVMGSNAQDNGNRRFICVQL 442


>gi|114320695|ref|YP_742378.1| DNA methylase N-4/N-6 domain-containing protein [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114227089|gb|ABI56888.1| DNA methylase N-4/N-6 domain protein [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 1077

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 7/85 (8%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILV-SSTKPGDIILDPFFGSGTSGAVAKKLR---- 245
           G+ ++ +  G K+    KP  L+  ++  S      ++ D F GSGT+G     L     
Sbjct: 733 GTRQVMSLFGNKVFSYPKPVGLMRDLIRISHLNSNCVVADYFAGSGTTGHAIVNLNRADG 792

Query: 246 --RSFIGIEMKQDYIDIATKRIASV 268
             R F+ +EM   +  +   R+  V
Sbjct: 793 SRRKFLLMEMGDYFDAVLLPRLKKV 817



 Score = 39.6 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 62/174 (35%), Gaps = 17/174 (9%)

Query: 38  KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK 97
            SV + + DPPYN +L+ Q  +  +    A +           + +     L +    L+
Sbjct: 504 GSVHVSYIDPPYNTELDRQSGKFIYKDNYARS----------TWASLMADRLQSGASFLR 553

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
            +GT       +    +  +L ++      +  I W+  + + +       + +  + +A
Sbjct: 554 EDGTFICSIDDNEYPTLREILNSVYGGDNFIGTIAWKSRDSVSSDHKISLNHNY-HVAYA 612

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
                 K   F  +    +N D   R  W  P+   + +     GE  +P + P
Sbjct: 613 KDLVANKFGGFPLNPGDYSNPDNDPRGPWK-PVPIDANKP---GGETKYPIENP 662


>gi|213855633|ref|ZP_03383873.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Typhi str.
           M223]
          Length = 171

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 9/59 (15%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLY 58
           + N+LA N+N +++F      + G+++ VL  L      +VD+I+ DPPYN   +G +Y
Sbjct: 95  EHNTLAENKNSHNLF------LTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY 147


>gi|126208185|ref|YP_001053410.1| putative methylation subunit, type III restriction-modification
           system [Actinobacillus pleuropneumoniae L20]
 gi|126096977|gb|ABN73805.1| putative methylation subunit, type III restriction-modification
           system [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
          Length = 962

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 6/95 (6%)

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
                  P  +G+  L+   G  +    K    +   +  ++K  D ILD F GSGT+  
Sbjct: 654 WIDKKYYPEFNGTNLLKGILGNSIFSYPKSIYAVQDYIKITSKKDDYILDYFAGSGTTAH 713

Query: 240 VAKKL------RRSFIGIEMKQDYIDIATKRIASV 268
               L       R +I +E  + +  +   R+  V
Sbjct: 714 AVINLNREDGGNRKYILVEQGEYFDTVLKPRVQKV 748



 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 62/179 (34%), Gaps = 26/179 (14%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLV 65
           ++E  N +      +I  ++   L  L     + V  I+ DPPYN   +  +Y+  +   
Sbjct: 394 LDEKTNGL------LIHSDNFQALNLLQEKYKEQVKCIYIDPPYNTNASEIIYKNGYK-- 445

Query: 66  DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML-QNLNFW 124
                         ++++     +   R++L   G       Y  +F  G +L +     
Sbjct: 446 ------------HSSWNSLIENRVSLSRKLLSNEGFFAGTIDYAELFSFGKILDEEFGEL 493

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
               IV    NP      R F  + E +I  +PSP +    FN   + A         D
Sbjct: 494 SRVGIVSILINPKGRQHERFFSASSEYMIVYTPSPNSAR--FNQTTIDAEKRKTFNLFD 550


>gi|307256727|ref|ZP_07538506.1| DNA methylase N-4/N-6 domain protein [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864775|gb|EFM96679.1| DNA methylase N-4/N-6 domain protein [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 962

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 6/95 (6%)

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
                  P  +G+  L+   G  +    K    +   +  ++K  D ILD F GSGT+  
Sbjct: 654 WIDKKYYPEFNGTNLLKGILGNSIFSYPKSIYAVQDYIKITSKKDDYILDYFAGSGTTAH 713

Query: 240 VAKKL------RRSFIGIEMKQDYIDIATKRIASV 268
               L       R +I +E  + +  +   R+  V
Sbjct: 714 AVINLNREDGGNRKYILVEQGEYFDTVLKPRVQKV 748



 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 62/179 (34%), Gaps = 26/179 (14%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLV 65
           ++E  N +      +I  ++   L  L     + V  I+ DPPYN   +  +Y+  +   
Sbjct: 394 LDEKTNGL------LIHSDNFQALNLLQEKYKEQVKCIYIDPPYNTNASEIIYKNGYK-- 445

Query: 66  DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML-QNLNFW 124
                         ++++     +   R++L   G       Y  +F  G +L +     
Sbjct: 446 ------------HSSWNSLIENRVSLSRKLLSNEGFFAGTIDYAELFSFGKILDEEFGEL 493

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
               IV    NP      R F  + E +I  +PSP +    FN   + A         D
Sbjct: 494 SRVGIVSILINPKGRQHERFFSASSEYMIVYTPSPNSAR--FNQTTIDAEKRKTFNLFD 550


>gi|294786033|ref|ZP_06751320.1| DNA methylase [Fusobacterium sp. 3_1_27]
 gi|294486370|gb|EFG33733.1| DNA methylase [Fusobacterium sp. 3_1_27]
          Length = 247

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 190 SGSERLRNKDGEKLHPTQKP----EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +     + +     H  +        +   +++  T   D+ILD F G GT+   AK L 
Sbjct: 18  NSVWSFKERGDWATHDAKWRGNWSPYIPRNLILRYTNEEDLILDQFIGGGTTLVEAKLLN 77

Query: 246 RSFIGIEMKQDYIDIATKRI 265
           R+ IGI++    I+   ++I
Sbjct: 78  RNIIGIDVNDVAIERCKEKI 97


>gi|237740907|ref|ZP_04571388.1| sensor protein fixL [Fusobacterium sp. 4_1_13]
 gi|256846849|ref|ZP_05552304.1| sensor protein fixL [Fusobacterium sp. 3_1_36A2]
 gi|229431204|gb|EEO41416.1| sensor protein fixL [Fusobacterium sp. 4_1_13]
 gi|256717815|gb|EEU31373.1| sensor protein fixL [Fusobacterium sp. 3_1_36A2]
          Length = 244

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 190 SGSERLRNKDGEKLHPTQKP----EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +     + +     H  +        +   +++  T   D+ILD F G GT+   AK L 
Sbjct: 15  NSVWSFKERGDWATHDAKWRGNWSPYIPRNLILRYTNEEDLILDQFIGGGTTLVEAKLLN 74

Query: 246 RSFIGIEMKQDYIDIATKRI 265
           R+ IGI++    I+   ++I
Sbjct: 75  RNIIGIDVNDVAIERCKEKI 94



 Score = 36.1 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 60/177 (33%), Gaps = 35/177 (19%)

Query: 3   QKNSLAINENQNSI-FEWKDK----IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQL 57
             N +AI   +  I FE+++     I KG++   L+ +  +++D I   PPY        
Sbjct: 81  DVNDVAIERCKEKIDFEFENSGKVYIHKGDARR-LDFIKDETIDFICTHPPY-------- 131

Query: 58  YRPDHSLVDAVTDSWDKFSSFE--AYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNI--- 111
                ++++   D  +  S  +   +    +       RVLK +     ++G        
Sbjct: 132 ----ANIIEYSEDIEEDLSHLKIPEFLKEMKKVASESYRVLKKDKFCAILMGDTRIKGHI 187

Query: 112 ----FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ-------NAHETLIWASP 157
               F +  + +   F +   I+  + N       +           AHE L     
Sbjct: 188 QPLGFEVMKVFEAEGFKLKEIIIKEQHNCKATGYWKTNSIKYNFFLIAHEYLFVFKK 244


>gi|85859485|ref|YP_461687.1| type III restriction-modification system methylation subunit
           [Syntrophus aciditrophicus SB]
 gi|85722576|gb|ABC77519.1| type III restriction-modification system methylation subunit
           [Syntrophus aciditrophicus SB]
          Length = 643

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 55/162 (33%), Gaps = 22/162 (13%)

Query: 20  KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN-----------------GQLYR 59
           K+  I+G+++  L+ L       V +I+ DPPYN   +                      
Sbjct: 99  KNLFIEGDNLEALKLLQETYLGKVKMIYVDPPYNTGNDFIYEDDFSENSDEFLKRSNQKD 158

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
            + + + A T++  +F S   + +     L   R +L+ +G +++    + +  +     
Sbjct: 159 EEGNRLIANTEANGRFHS--DWLSMIYPRLKLARNLLRDDGVIFISIDDNEVTNLQRACD 216

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
            +                   R   F   H+ ++    + + 
Sbjct: 217 EIFGGANFVAQLTIIVKPEGRRYGFFAKTHDYILVYCKNHEY 258



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 20/106 (18%)

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           D  I    G+  L+   G+ +    KP AL+  I    +    +ILD F GS T+     
Sbjct: 386 DKEIISNKGTRELQVLLGKGIFDFPKPVALIKLITTIGSDEHSLILDFFSGSATTAHAVI 445

Query: 243 KL------RRSFIGI-------EMKQDY-------IDIATKRIASV 268
           +L       R FI +       E  + +        +I+ +RI   
Sbjct: 446 QLNAEDGGNRKFIMVQLPEPCDEKSEAFKAGYKTIAEISKERIRRA 491


>gi|260888179|ref|ZP_05899442.1| putative DNA methylase [Selenomonas sputigena ATCC 35185]
 gi|330838478|ref|YP_004413058.1| RNA methylase [Selenomonas sputigena ATCC 35185]
 gi|260862013|gb|EEX76513.1| putative DNA methylase [Selenomonas sputigena ATCC 35185]
 gi|329746242|gb|AEB99598.1| RNA methylase [Selenomonas sputigena ATCC 35185]
          Length = 248

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 190 SGSERLRNKDGEKLHPTQKP----EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +       +     H  +        +   IL+  ++  D++LD F G GT+   AK L 
Sbjct: 18  TTHWSFPKRGNWATHDAKWRGNWSPYIPRNILLRYSEEKDLVLDQFAGGGTTLVEAKLLN 77

Query: 246 RSFIGIEMKQDYIDIATKRI 265
           R+ IG+++    ++   ++I
Sbjct: 78  RNIIGVDVNDTALERCKEKI 97



 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 23/141 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF--EA 80
           I KG++ + L+ +P  S+DLI   PPY              ++    D     S    + 
Sbjct: 110 IHKGDARN-LDFIPDGSIDLICTHPPY------------ADIIKYSEDIEADLSHLKVKD 156

Query: 81  YDAFTRAWLLACRRVLKPNGTLWV-IGSYHNI-------FRIGTMLQNLNFWILNDIVWR 132
           +     A      RV+K      V +G            F++  + ++  F +   I+  
Sbjct: 157 FLEEMNAVAAESYRVMKKGKFCVVLMGDTRQKGHMIPMSFQVMRIFEDAGFTLKELIIKE 216

Query: 133 KSNPMPNFRGRRFQNAHETLI 153
           + N       +     +  L+
Sbjct: 217 QHNCKATGYWKTNSVKYNFLL 237


>gi|317011656|gb|ADU85403.1| type III DNA modification enzyme (methyltransferase) [Helicobacter
           pylori SouthAfrica7]
          Length = 437

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 63/158 (39%), Gaps = 18/158 (11%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHS--------LVDAV 68
           K  +IKG+++  L+ L    ++ + +I+ DPPYN + N  +Y  D S         +D  
Sbjct: 89  KHILIKGDNLDALKILRQSYSEKIKMIYIDPPYNTKNNEFIYSDDFSQSNEALLKQLDYS 148

Query: 69  TDSWDKFSSF------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL- 121
            +  D  ++         + +F    LL  + +LK +G +++    +   ++  +   + 
Sbjct: 149 KEKLDYINNLFGSKCHSGWLSFMYPRLLLAKDLLKKDGVIFISIDDNEAAQLKLLCDEIF 208

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
                     RK+    N         HE L+  + + 
Sbjct: 209 GERNFVADFIRKTKSTTNDAKTGVNYQHEFLLCYAKNK 246



 Score = 43.4 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +     K    +++I+  +T+ GD ILD F GSGT+     +  
Sbjct: 378 EYFSYPKSVDFMAKIIEHATEKGDTILDFFAGSGTTAHAVLESN 421


>gi|49420963|gb|AAT65822.1| M.EsaWC2II [uncultured bacterium]
          Length = 428

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 4/95 (4%)

Query: 187 PICSGSERLRNKDGEKLHPT--QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           P+ + +  +  K    L     Q    L+  +L +   PG ++LDPF GSGT    + +L
Sbjct: 33  PLPASTLNIEGKSRSNLFSWRGQFSPQLVEALLRAYAAPGSVVLDPFMGSGTVLIESARL 92

Query: 245 RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
                G E+          RI  +  L   E   L
Sbjct: 93  GLPVYGYEVNPAAY--LRARIYELCSLTKSERIEL 125


>gi|307249915|ref|ZP_07531888.1| DNA methylase N-4/N-6 domain protein [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306858043|gb|EFM90126.1| DNA methylase N-4/N-6 domain protein [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 962

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 6/95 (6%)

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
                  P  +G+  L+   G  +    K    +   +  ++K  D ILD F GSGT+  
Sbjct: 654 WIDKKYYPEFNGTNLLKGILGNSIFSYPKSIYAVQDYIKITSKKDDYILDYFAGSGTTAH 713

Query: 240 VAKKL------RRSFIGIEMKQDYIDIATKRIASV 268
               L       R +I +E  + +  +   R+  V
Sbjct: 714 AVINLNREDGGNRKYILVEQGEYFDTVLKPRVQKV 748



 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 62/179 (34%), Gaps = 26/179 (14%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLV 65
           ++E  N +      +I  ++   L  L     + V  I+ DPPYN   +  +Y+  +   
Sbjct: 394 LDEKTNGL------LIHSDNFQALNLLQEKYKEQVKCIYIDPPYNTNASEIIYKNGYK-- 445

Query: 66  DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML-QNLNFW 124
                         ++++     +   R++L   G       Y  +F  G  L +     
Sbjct: 446 ------------HSSWNSLIENRVSLSRKLLSNEGFFAGTIDYAELFSFGKNLDEEFGEL 493

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
              DIV    NP      R F  + E +I  +PSP +    FN   + A         D
Sbjct: 494 SRVDIVSILINPKGRQHERFFSASSEYMIVYTPSPNSAR--FNQTTIDAEKRKTFNLFD 550


>gi|165976122|ref|YP_001651715.1| methylation subunit, type III restriction-modification system
           [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|165876223|gb|ABY69271.1| probable methylation subunit, type III restriction-modification
           system [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
          Length = 962

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 6/95 (6%)

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
                  P  +G+  L+   G  +    K    +   +  ++K  D ILD F GSGT+  
Sbjct: 654 WIDKKYYPEFNGTNLLKGILGNSIFSYPKSIYAVQDYIKITSKKDDYILDYFAGSGTTAH 713

Query: 240 VAKKL------RRSFIGIEMKQDYIDIATKRIASV 268
               L       R +I +E  + +  +   R+  V
Sbjct: 714 AVINLNREDGGNRKYILVEQGEYFDTVLKPRVQKV 748



 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 62/179 (34%), Gaps = 26/179 (14%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLV 65
           ++E  N +      +I  ++   L  L     + V  I+ DPPYN   +  +Y+  +   
Sbjct: 394 LDEKTNGL------LIHSDNFQALNLLQEKYKEQVKCIYIDPPYNTNASEIIYKNGYK-- 445

Query: 66  DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML-QNLNFW 124
                         ++++     +   R++L   G       Y  +F  G +L +     
Sbjct: 446 ------------HSSWNSLIENRVSLSRKLLSNEGFFAGTIDYAELFSFGKILDEEFGEL 493

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
               IV    NP      R F  + E +I  +PSP +    FN   + A         D
Sbjct: 494 SRVGIVSILINPKGRQHERFFSASSEYMIVYTPSPNSAR--FNQTTIDAEKRKTFNLFD 550


>gi|317181568|dbj|BAJ59352.1| Type II DNA modification enzyme [Helicobacter pylori F57]
          Length = 203

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 11/107 (10%)

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           L + +         +    LK + ++     D+      G++ L     + L  T KP A
Sbjct: 48  LYYQNRLIFKNNRPYEKYYLKESQDNCLSVLDFY--SRQGTKDLEKLGLKGLFKTPKPVA 105

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           L+  +L+ ST    IILD F GSGT+             IE+ +DY 
Sbjct: 106 LIKYLLLCSTPKDSIILDFFAGSGTTAQAV---------IEVNKDYY 143


>gi|304438944|ref|ZP_07398867.1| site-specific DNA-methyltransferase (adenine-specific)
           [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372610|gb|EFM26193.1| site-specific DNA-methyltransferase (adenine-specific)
           [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 676

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 63/173 (36%), Gaps = 23/173 (13%)

Query: 10  NENQNSIFE---WKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHS 63
           +E  NS+ E    ++  I G+++  L+ L    A  V  I+ DPPYN   +G +Y    +
Sbjct: 81  DEAHNSLPENVNSENVYISGDNLDGLKHLLKSYAGQVKCIYIDPPYNTGSDGFVYNDKFN 140

Query: 64  -----LVDAVTDSWDK-----------FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
                LV+ ++   ++            +S  A+  F    L   + +L  +G +++   
Sbjct: 141 FTVEELVEKLSIDEEQSQRILDLTNRGSASHSAWLMFMYPRLQLAKDLLDKDGVIFISID 200

Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNFRGRRFQNAHETLIWASPSP 159
            +    +  +  ++                  ++      N  E ++  +   
Sbjct: 201 DNEQGNLKLLCDDIFSETNFVAQLVWEKKKKGSYLADSVTNIKEYILVYAKRK 253



 Score = 41.5 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
            KP  L+ ++L    K   +++D F GS T+   A +L 
Sbjct: 423 PKPVLLIMKLLSCLQKQDLLVVDFFSGSATTAEAAMRLN 461


>gi|187250641|ref|YP_001875123.1| DNA methylase [Elusimicrobium minutum Pei191]
 gi|186970801|gb|ACC97786.1| DNA methylase [Elusimicrobium minutum Pei191]
          Length = 656

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 61/186 (32%), Gaps = 25/186 (13%)

Query: 20  KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           ++  I+G ++ VL+ L       + +I+ DPPYN   +  +Y    +          K  
Sbjct: 89  QNVFIEGENLEVLKILQKSYFGKIKMIYIDPPYNTGNDNFIYPDKFAETKEEYLKKIKEK 148

Query: 77  SFEAYD--------------AFTRAWLLACRR-------VLKPNGTLWVIGSYHNIFRIG 115
             E Y                F   WL            +LK +G ++V    + +  + 
Sbjct: 149 DEEGYLLKEGLFRKNSKENGQFHSNWLNMMYPRLFLAKNLLKDDGVIFVSIDDNEVHNLR 208

Query: 116 TMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
            ++  +        I  R +           +N    L+++  +  A      ++    +
Sbjct: 209 LLMNEVFGEDNFKAIFPRVTKKGGKSSEATAKNHDYVLMYSKNNSFADIIGIAHNDDGYS 268

Query: 175 NEDVQM 180
           N+D   
Sbjct: 269 NQDEFF 274



 Score = 48.1 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 47/130 (36%), Gaps = 10/130 (7%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGI-- 251
           G+ +    KP  L+S++     +    +LD F GSGT+     +L       R FI +  
Sbjct: 411 GKGIFEYTKPPELISQLAHLINEKDFFVLDFFAGSGTTAQAVMELNKEDGGKRKFICVQL 470

Query: 252 -EMKQDYIDIATKRIASVQPLGNIELTVLTGK-RTEPRVAFNLLVERGLIQPGQILTNAQ 309
            E  ++  +       ++  +    +     K  TE +    +    G +  G      +
Sbjct: 471 PEKTEETSEAFRAGYKTISEISAERIRRAIKKIETETKADNTMFKAEGKLDLGFKFYKLK 530

Query: 310 GNISATVCAD 319
            +   T  +D
Sbjct: 531 ESNFKTWRSD 540


>gi|237745376|ref|ZP_04575857.1| sensor protein fixL [Fusobacterium sp. 7_1]
 gi|229432605|gb|EEO42817.1| sensor protein fixL [Fusobacterium sp. 7_1]
          Length = 247

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 190 SGSERLRNKDGEKLHPTQKP----EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +     + +     H  +        +   +++  T   D+ILD F G GT+   AK L 
Sbjct: 18  NSVWSFKERGDWATHDAKWRGNWSPYIPRNLILRYTNEKDLILDQFIGGGTTLVEAKLLN 77

Query: 246 RSFIGIEMKQDYIDIATKRI 265
           R+ IGI++    I+   ++I
Sbjct: 78  RNIIGIDVNDVAIERCKEKI 97


>gi|182413004|ref|YP_001818070.1| adenine-specific DNA methylase [Opitutus terrae PB90-1]
 gi|177840218|gb|ACB74470.1| Adenine-specific DNA methylase containing a Zn-ribbon-like protein
           [Opitutus terrae PB90-1]
          Length = 610

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 41/118 (34%), Gaps = 17/118 (14%)

Query: 35  LPAKSVDLIFADPPYNLQLNG-QLYRPDHSLVDAVTDSWDKFS-------------SFEA 80
           +   SVDL+  DPPY   +   +L R       A+  +WD                S E 
Sbjct: 412 MADASVDLVITDPPYYDSIQYAELSRLFRVFAQALGLNWDDRVENDEAVPNRHLGCSHEQ 471

Query: 81  YDAFTRAWLLACRRVLKPNGT-LWVIGSYHN--IFRIGTMLQNLNFWILNDIVWRKSN 135
           Y     A     RR LK +G  L             IG  L++  + +++  V    N
Sbjct: 472 YVTRLTAIFAETRRTLKRSGRMLLTFHDSKILAWQAIGDALRDSAWKVVSVAVVHSEN 529


>gi|229035116|ref|ZP_04189062.1| Modification methylase [Bacillus cereus AH1271]
 gi|228728182|gb|EEL79212.1| Modification methylase [Bacillus cereus AH1271]
          Length = 199

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 11/116 (9%)

Query: 208 KPEALLSRILVSSTKP-GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
               L+ R++    K     ILDPF GSG++   A +L    +G E+      ++  ++ 
Sbjct: 47  FSVELVKRLIKEQAKRSTGTILDPFSGSGSTLIGANELGYKGLGFEVNPFSYFLSKVKLE 106

Query: 267 SV--------QPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISA 314
           +         + L    L    G    P ++F   V    +Q    L + + NI  
Sbjct: 107 NYTLGEITLFKSLFEQVLNEENGIFPMPNLSFADKVFNKEVQ--DKLMSIKKNIID 160


>gi|156740418|ref|YP_001430547.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156231746|gb|ABU56529.1| DNA methylase N-4/N-6 domain protein [Roseiflexus castenholzii DSM
           13941]
          Length = 1028

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 7/69 (10%)

Query: 207 QKPEALLSRILV-SSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYID 259
            KP  L+  +   +     D++LD F GSGT+G     L       R FI +EM Q +  
Sbjct: 741 PKPVELIESLARQTLMNEADVVLDYFAGSGTTGHAVINLNRKDGGRRKFILVEMAQYFDT 800

Query: 260 IATKRIASV 268
           +   RI  V
Sbjct: 801 VLLPRIKKV 809



 Score = 37.3 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 18/120 (15%)

Query: 38  KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK 97
           + V  I+ DPPYN   +  LY+  +                  + +     L      L+
Sbjct: 489 ERVKCIYIDPPYNTGNDEFLYKDSYQ--------------HSCWLSMMSQRLSLSSSYLE 534

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNLNF--WILNDIVWRKSNP--MPNFRGRRFQNAHETLI 153
             G L++         +  MLQ+L     I++++VW+K +   M   RG R    H+ ++
Sbjct: 535 SQGCLFISIDDIEFPALRYMLQHLFREDTIISELVWKKRSGGDMTAGRGARLSVDHDYVV 594


>gi|332878300|ref|ZP_08446026.1| type II DNA modification methyltransferase M.TdeIII [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332683751|gb|EGJ56622.1| type II DNA modification methyltransferase M.TdeIII [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 534

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 11/93 (11%)

Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSST--------- 221
              E +    +W +      E    K   +LHP +      L+   L S T         
Sbjct: 69  EWKEKLGDDLNWSLSFEQYKEAETTKHVHRLHPYKGKFIPQLVEYFLDSHTDAFKKEVFF 128

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           K GDIILDPF GSGT+   A +L    IG+++ 
Sbjct: 129 KAGDIILDPFSGSGTTMVQASELGMHAIGVDVS 161


>gi|299142959|ref|ZP_07036085.1| type III restriction-modification system, methylase subunit
           [Prevotella oris C735]
 gi|298575575|gb|EFI47455.1| type III restriction-modification system, methylase subunit
           [Prevotella oris C735]
          Length = 650

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 54/153 (35%), Gaps = 20/153 (13%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQ---------------LNGQLYRPDHSLV 65
           I+G+++ VL+ +       V +I+ DPPYN                  +      D    
Sbjct: 105 IEGDNLEVLKLIQNSYLGKVKMIYIDPPYNTGNDFVYHDHYDESYADYDEHNKFEDGIRF 164

Query: 66  DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
              TDS  +F S   + +   A L+  R +L   G +++    H +  +  +   +    
Sbjct: 165 WRNTDSNGRFHS--DWCSMIYARLMIARSLLSEEGVIFISIDDHEVDDLKKICNEVFGES 222

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
                  +     N +G  +    + L+  + +
Sbjct: 223 NFVGCAGRITKKSNNKGDFWAPNFDYLLTYTKN 255


>gi|256028240|ref|ZP_05442074.1| DNA methylase N-4/N-6 [Fusobacterium sp. D11]
 gi|289766172|ref|ZP_06525550.1| sensor protein fixL [Fusobacterium sp. D11]
 gi|289717727|gb|EFD81739.1| sensor protein fixL [Fusobacterium sp. D11]
          Length = 247

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 190 SGSERLRNKDGEKLHPTQKP----EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +     + +     H  +        +   +++  T   D+ILD F G GT+   AK L 
Sbjct: 18  NSVWSFKERGDWATHDAKWRGNWSPYIPRNLILRYTNEKDLILDQFIGGGTTLVEAKLLN 77

Query: 246 RSFIGIEMKQDYIDIATKRI 265
           R+ IGI++    I+   ++I
Sbjct: 78  RNIIGIDVNDVAIERCKEKI 97



 Score = 36.5 bits (83), Expect = 7.3,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 59/177 (33%), Gaps = 35/177 (19%)

Query: 3   QKNSLAINENQNSI-FEWKDK----IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQL 57
             N +AI   +  I FE+++     I KG++   L  +  +++D I   PPY        
Sbjct: 84  DVNDVAIERCKEKIDFEFENSGKVYIHKGDARK-LNFIKNETIDFICTHPPY-------- 134

Query: 58  YRPDHSLVDAVTDSWDKFSSFE--AYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNI--- 111
                +++    D  +  S  +   +    +       RVLK +     ++G        
Sbjct: 135 ----ANIIKYSEDIEEDLSHLKIPEFLKEMKKVASESYRVLKKDKFCAILMGDTRIKGHI 190

Query: 112 ----FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ-------NAHETLIWASP 157
               F +  + + + F +   I+  + N       +           AHE L     
Sbjct: 191 QPLGFEVMKVFEKVGFKLKEIIIKEQHNCKATGYWKTNSIKYNFFLIAHEYLFIFKK 247


>gi|313889261|ref|ZP_07822915.1| methyltransferase domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312844815|gb|EFR32222.1| methyltransferase domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 248

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 9/94 (9%)

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
            +  N +++M + W  P          K      P      +   I++  +   D+ILD 
Sbjct: 8   WEPENFELEMTTHWSFPQRGNWATHDAKWRGNWSPY-----IPRNIILRYSNEKDLILDQ 62

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           F G GT+   AK L R+  GI++     D+A  R
Sbjct: 63  FAGGGTTLVEAKLLNRNIFGIDVN----DVALNR 92



 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 50/139 (35%), Gaps = 23/139 (16%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS--FEAYD 82
           KG++ + L+ +P  S+DLI   PPY             ++++   D  +  S    + + 
Sbjct: 112 KGDARN-LDFIPDNSIDLICTHPPY------------ANIIEYSEDIEEDLSRLKIKDFL 158

Query: 83  AFTRAWLLACRRVLKPNGTL-WVIGSYHNI-------FRIGTMLQNLNFWILNDIVWRKS 134
           A  +       RVLK +     +IG            F +  + +   F +   I+  + 
Sbjct: 159 AEMKKVAAESYRVLKKDKFCAVLIGDTRQKGHMIPLSFYVMQIFEEAGFKMKEMIIKEQH 218

Query: 135 NPMPNFRGRRFQNAHETLI 153
           N       +     +  L+
Sbjct: 219 NCKATGFWKTNSIKYNFLL 237


>gi|332980762|ref|YP_004462203.1| DNA methylase N-4/N-6 domain-containing protein [Mahella
           australiensis 50-1 BON]
 gi|332698440|gb|AEE95381.1| DNA methylase N-4/N-6 domain protein [Mahella australiensis 50-1
           BON]
          Length = 534

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 17/105 (16%)

Query: 167 NYDALKAANEDVQMRS------DWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILV 218
           NY       ++V  ++      +W +      E    K   +LHP +      L+   L 
Sbjct: 62  NYYESYYGRKEVDWKNKLGEDLNWALSFEHVKEAETTKHVHRLHPYKGKFIPQLVEYFLD 121

Query: 219 SSTK---------PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
             T           GDI+LDPF GSGT+     +L    IGI++ 
Sbjct: 122 DHTDDFKKETYFRKGDIVLDPFCGSGTTLVQCNELDMHAIGIDVS 166


>gi|229073312|ref|ZP_04206462.1| Modification methylase [Bacillus cereus F65185]
 gi|228709819|gb|EEL61843.1| Modification methylase [Bacillus cereus F65185]
          Length = 421

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 20/29 (68%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYN 50
           KII+G+++  L+ L  +S+DLI   PPY 
Sbjct: 222 KIIQGDTLKELKTLNNESIDLICTSPPYG 250



 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 1/72 (1%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           W     + S   +  +   +        ++  I+       + ILDPF GSGT+     K
Sbjct: 16  WDFNKVTRSGIHKLANYPAMMVAPMQHKIIEDIVEIEGNISN-ILDPFHGSGTTLVEGNK 74

Query: 244 LRRSFIGIEMKQ 255
                IGI++  
Sbjct: 75  FNLDLIGIDINP 86


>gi|256545024|ref|ZP_05472392.1| type III restriction-modification system, methylase subunit
           [Anaerococcus vaginalis ATCC 51170]
 gi|256399320|gb|EEU12929.1| type III restriction-modification system, methylase subunit
           [Anaerococcus vaginalis ATCC 51170]
          Length = 616

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 67/194 (34%), Gaps = 20/194 (10%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQ--------------- 52
           E+  +  + ++  I+G+++SVL+ L       + +I+ DPPYN                 
Sbjct: 88  EDSKNWNDTENLYIEGDNLSVLKLLQESYLGKIKMIYIDPPYNTGSDLIYIDDFVVDIEE 147

Query: 53  LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
            N  +   D   +    ++         + +   + L+  R +L  +G +++    +   
Sbjct: 148 YNASIGLHDDEGLKLYRNTESNGRFHSYWCSMIYSRLMIARNLLASDGVIFISIDDNEQA 207

Query: 113 RIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
            +  +   +         + RK+  M    G  F   HE L+  +             A 
Sbjct: 208 NLKKICDEVFGESNNVGEIIRKTKSMTADNGSGFNLQHEVLLVYAKDKNQIVLQGEPKAF 267

Query: 172 -KAANEDVQMRSDW 184
              +N D     +W
Sbjct: 268 DNYSNPDNDPNGEW 281



 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 20/96 (20%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA------VAKKLRRSFIGIEM 253
           G  +    KP   + +++  +T    IILD F GS T+         A    R FI +++
Sbjct: 385 GNDVFSYPKPVVFIQKLIKYATDKESIILDFFSGSATTAQAVMEQNAADGGNRKFIMVQL 444

Query: 254 KQD-------Y-------IDIATKRIASVQPLGNIE 275
           ++        Y        D+   RI+ V    N +
Sbjct: 445 QEQVDEKKGAYKAGYETLCDVGRNRISLVAETINKD 480


>gi|253999373|ref|YP_003051436.1| DNA methylase N-4/N-6 domain-containing protein [Methylovorus sp.
           SIP3-4]
 gi|253986052|gb|ACT50909.1| DNA methylase N-4/N-6 domain protein [Methylovorus sp. SIP3-4]
          Length = 838

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 27/64 (42%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++K G   H       ++ R++   +  GD++ DPF G  T    A  L R   G E+  
Sbjct: 747 QSKRGLNNHICPLQIDIVDRLINRYSNKGDVVYDPFAGLMTVPYRAVDLGRYGRGAELNS 806

Query: 256 DYID 259
            Y  
Sbjct: 807 GYFK 810



 Score = 36.5 bits (83), Expect = 6.9,   Method: Composition-based stats.
 Identities = 7/55 (12%), Positives = 17/55 (30%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            ++  + +    ++   SV LI    P++          D    +     W +  
Sbjct: 477 TVVNNDCVDETARMEENSVGLIVTSIPFSNHYEYTPSYNDFGHTENNDQFWQQMD 531


>gi|152978352|ref|YP_001343981.1| DNA methylase N-4/N-6 domain-containing protein [Actinobacillus
           succinogenes 130Z]
 gi|150840075|gb|ABR74046.1| DNA methylase N-4/N-6 domain protein [Actinobacillus succinogenes
           130Z]
          Length = 611

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 71/211 (33%), Gaps = 25/211 (11%)

Query: 20  KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN------------------GQLY 58
           ++  I+G ++ VL+ L      SV +I+ DPPYN   +                  G L 
Sbjct: 36  QNVFIEGENLDVLKVLQKSYFNSVKMIYIDPPYNTGNDFIYKDNFAESKAEYAERVGDLD 95

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
                    V +S +       +       L   + +L  +G +++    +   ++  + 
Sbjct: 96  ADGKLKRAFVRNSKENGHYHSNWLNMMLPRLHLAKNLLTDDGVIFISIDDNEQAQLKLLC 155

Query: 119 QNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
             +        I+  ++NP      +    +++  +  + + +   +  N   +    +D
Sbjct: 156 DEVFGEENFVAILSTENNPKGRKNSKYISISNDFCLIYAKNKEQGCFIEN---IPKNEKD 212

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
           ++   +      SG   L  ++      T  
Sbjct: 213 MKQDENGNYVHSSGKRVLVGENEFNNFVTDF 243


>gi|291614396|ref|YP_003524553.1| DNA methylase N-4/N-6 domain protein [Sideroxydans lithotrophicus
           ES-1]
 gi|291584508|gb|ADE12166.1| DNA methylase N-4/N-6 domain protein [Sideroxydans lithotrophicus
           ES-1]
          Length = 843

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 4/105 (3%)

Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
           TF   A  + +E V    + +I +       +++   + H       ++ R++   + P 
Sbjct: 724 TFMSLAPGSHDEAVWHDVNRMITL----NGNQSQRNVEKHVCPLQFDIVDRLIERYSNPD 779

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           +++ DPF G GT    A    R   G E+   Y   + + + + +
Sbjct: 780 ELVYDPFCGLGTVPYRAILKGRRGQGSELNSAYFFDSVQYLQAAE 824


>gi|330959487|gb|EGH59747.1| putative restriction-modification methylase [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 87

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 32/60 (53%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           H   +P ++   ++   T+ GD+++DP+ G   +G  A+ L R++I  E    Y+  A +
Sbjct: 4   HGAGQPFSVAEFLIKYLTEEGDLVVDPWGGRSMTGLAAEMLNRTWITGERALQYVRGAAE 63


>gi|227327928|ref|ZP_03831952.1| ribosomal protein L11 methyltransferase [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 295

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 45/131 (34%), Gaps = 10/131 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   IP  +    + +     G   HPT    AL  + 
Sbjct: 95  WEREWMDNFHPMQFGKRLWICPSWREIPDPNAVNVMLDPGLAFGTGTHPTT---ALCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  I+D   GSG     A KL     IGI++    I  +     + Q  G  E
Sbjct: 152 LDGLDLEGKTIIDFGCGSGILAIAALKLGATRAIGIDIDPQAIQASRD---NAQRNGVSE 208

Query: 276 LTVLTGKRTEP 286
              L   + +P
Sbjct: 209 RLELYLPKDQP 219


>gi|284097548|ref|ZP_06385617.1| DNA methyl transferase [Candidatus Poribacteria sp. WGA-A3]
 gi|283830942|gb|EFC34983.1| DNA methyl transferase [Candidatus Poribacteria sp. WGA-A3]
          Length = 84

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 25/89 (28%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I   N I  ++ +  + +DL+   PPY                       DK   +E 
Sbjct: 4   NEIRNENCIDTMKMMSDEFIDLVVTSPPY-----------------------DKMREYEG 40

Query: 81  Y-DAFTRAWLLACRRVLKPNG-TLWVIGS 107
           Y         +   RV+K  G  +WVIG 
Sbjct: 41  YRLKAFEQIAIELYRVVKDGGVVVWVIGD 69


>gi|282901556|ref|ZP_06309477.1| DNA-methyltransferase protein [Cylindrospermopsis raciborskii
           CS-505]
 gi|281193561|gb|EFA68537.1| DNA-methyltransferase protein [Cylindrospermopsis raciborskii
           CS-505]
          Length = 87

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 24/40 (60%)

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            F  SG+    A K  R  IGIE+  +Y++IA +++ +++
Sbjct: 28  FFIRSGSIAEAAIKTGRKAIGIEINPNYVNIAVQKVKNIR 67


>gi|284165691|ref|YP_003403970.1| hypothetical protein Htur_2419 [Haloterrigena turkmenica DSM 5511]
 gi|284015346|gb|ADB61297.1| hypothetical protein Htur_2419 [Haloterrigena turkmenica DSM 5511]
          Length = 361

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 6/69 (8%)

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA-----KKLR-RSFIGI 251
            D    H  QKP  L + ++   +K GD +LDPF G G +   A     +    R  IG 
Sbjct: 90  HDLRSEHGGQKPPRLCAELIGRFSKAGDTVLDPFAGVGGTLLGASLCEHEGTGLREAIGF 149

Query: 252 EMKQDYIDI 260
           E  + +I++
Sbjct: 150 ERNRRWIEL 158



 Score = 43.8 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 28/58 (48%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
            G+   +++++   SVDL+  D PY      +  R + +  ++   ++D  ++ +  D
Sbjct: 185 HGDCADLIDEIDDGSVDLLLTDVPYWHMDELEQTRNERATRESKLGAFDAAAAPDEGD 242


>gi|86757495|gb|ABD15134.1| M1.BsrDI [Geobacillus stearothermophilus]
          Length = 633

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 24/50 (48%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
            +KP  ++S  L S T    II+DPF GSG       +L R   G ++  
Sbjct: 24  ARKPHNVISHFLESLTPDNGIIVDPFCGSGVVLREGSRLGRKVFGFDINP 73



 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 48/124 (38%), Gaps = 15/124 (12%)

Query: 23  IIKGNSISVLEKLPAKSV--DLIFADPPYNLQLNGQLYR----------PDHSLVDAVTD 70
           I K +++S ++KL  K +  DL+F DPPY   +    +           PD +   +V+D
Sbjct: 327 IQKMDAVSGIKKLKEKGIKSDLLFLDPPYGDSVPYLEFSSLWNSFLSDFPDINQDISVSD 386

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL---WVIGSYHNIFRIGTMLQNLNFWILN 127
             +K  S+  Y +     +   + +L  +G +   +          +    Q+  F    
Sbjct: 387 RKNKNDSWNFYSSKLMELMKEAKDLLNKDGRVLVTFNNNDLKAWESLLRAFQSNGFRCEY 446

Query: 128 DIVW 131
            I  
Sbjct: 447 VIYQ 450


>gi|319787225|ref|YP_004146700.1| DNA methylase N-4/N-6 domain protein [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465737|gb|ADV27469.1| DNA methylase N-4/N-6 domain protein [Pseudoxanthomonas suwonensis
           11-1]
          Length = 425

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 204 HPTQKPEALLSRILVSSTKPGD-IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +    P    S I+ S       ++LDP+ GSGT+   A +     +G ++    + +A 
Sbjct: 25  YYAGYPVKFASTIIESIDLARGSVVLDPWSGSGTTPYAAARAGVDSLGFDINPAMVVVAK 84

Query: 263 KRI 265
            R+
Sbjct: 85  ARL 87



 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG 55
           A+   ++ + + +  I   +S ++   LP  +VD +   PPY  +++ 
Sbjct: 217 ALASQRDIVNDSRIDIRLADSTNI--PLPDSTVDAVITSPPYCTRIDY 262


>gi|257126973|ref|YP_003165087.1| RNA methylase [Leptotrichia buccalis C-1013-b]
 gi|257050912|gb|ACV40096.1| putative RNA methylase [Leptotrichia buccalis C-1013-b]
          Length = 247

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 5/93 (5%)

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
            +    +++M + W  P          K      P      +   +L+  +  GD+ILD 
Sbjct: 8   WEPEEFELEMNTVWSFPDRGKWATHDAKYRGNWSPY-----IPRNLLLRYSNEGDLILDQ 62

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           F G GT+   AK L R+ IG+++  + +    +
Sbjct: 63  FAGGGTTLVEAKLLNRNIIGVDINSNALKRCKE 95


>gi|113476662|ref|YP_722723.1| hypothetical protein Tery_3117 [Trichodesmium erythraeum IMS101]
 gi|110167710|gb|ABG52250.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101]
          Length = 936

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 66/208 (31%), Gaps = 38/208 (18%)

Query: 21  DKIIKGNSI--SVLEKLPAKSVDLIFADPPY----------------------------- 49
           +K I+ +S     L  +P  SVD I  DPPY                             
Sbjct: 502 NKTIQIDSTSADTLYHIPNNSVDAIITDPPYYATIQYAELSDFFYVWQRRVLGDIFPDLY 561

Query: 50  --NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIG 106
              L    +    + S    +  S D+ ++ + Y+A          RVL+ +G +     
Sbjct: 562 LTELTDKDREAVANPSRFRNMGTSPDELAN-QDYEAKMALAFAEHYRVLRDDGVMTVQFN 620

Query: 107 SYHN--IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ-NAHETLIWASPSPKAKG 163
              +     +   L +  F I         NP    + ++   ++   L+     P A  
Sbjct: 621 HKESGAWDVLAKSLIDAGFEITASWAVSTENPQNLHQAKKNSVSSTVLLVCRKRDPNAPQ 680

Query: 164 YTFNYDALKAANEDVQMRSDWLIPICSG 191
             ++    + AN+  +   D+     +G
Sbjct: 681 AWWDDLQPEVANQVEERAPDFEKNDITG 708


>gi|84616882|emb|CAJ13776.1| virulence associated protein [Desulfococcus multivorans]
          Length = 933

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 36/113 (31%), Gaps = 14/113 (12%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS--------S 77
            +    +  +P  S+D IF DPP+    +             V  +  + +        S
Sbjct: 496 ADC---MRNMPDNSIDYIFTDPPFGHNFDYSELNFFWEAFLGVLTNQTQEAIVSSSQKKS 552

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTL---WVIGSYHNIFRIGTMLQNLNFWILN 127
            E Y     +      RVLKP   +   +          I T L+   F + N
Sbjct: 553 VEDYRHLMESCFREYYRVLKPGHWITVEFSNTKASVWNAIQTALERCGFVVAN 605



 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 2/91 (2%)

Query: 156 SPSPKAKGYTFNYDALKAAN-EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
            P+P    +   ++A K    ED     +      S  +     +    H T+ P   + 
Sbjct: 77  CPNPWIADFIAEWEAQKPKQPEDYHYHREPFAADVSEGKNDPIYNAHSYH-TKVPHKAIM 135

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           R ++  T+PGDI+ D F G+G +G       
Sbjct: 136 RYILHYTQPGDIVFDGFCGTGMTGVAGALCG 166


>gi|258508021|ref|YP_003170772.1| type III restriction-modification system methylation subunit
           [Lactobacillus rhamnosus GG]
 gi|257147948|emb|CAR86921.1| Type III restriction-modification system methylation subunit
           [Lactobacillus rhamnosus GG]
          Length = 273

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 6/68 (8%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIE 252
           DG     T KP  L+ R L         +LD F GS T+     +L       R FI  +
Sbjct: 6   DGVSPFGTPKPVELIKRFLELQNDDDATVLDFFAGSSTTAEAVMQLNVEDGGHRKFIMAQ 65

Query: 253 MKQDYIDI 260
           + +    I
Sbjct: 66  LPEKTYHI 73


>gi|332796925|ref|YP_004458425.1| putative RNA methylase [Acidianus hospitalis W1]
 gi|332694660|gb|AEE94127.1| putative RNA methylase [Acidianus hospitalis W1]
          Length = 310

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 53/147 (36%), Gaps = 33/147 (22%)

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA------- 266
           SR+LV+   P   ILDPF G G+    A  L  + IG ++    I+     +        
Sbjct: 151 SRLLVNLANPEKTILDPFAGVGSILIEASWLGYNCIGGDIDSKMIEKTKYNLKHFNYECQ 210

Query: 267 ----SVQPLGNIELTVLTGKRTEP--------RVAFNLLVERGLIQPGQIL--------- 305
                +  L   E +V       P         V F+ L E       ++L         
Sbjct: 211 IIQEDISNLPIKENSVDAIVTDPPYGRSVNARDVKFDELYESLFFNSAEVLKKGGKLVFA 270

Query: 306 TNAQGNISATVCADGTLISGTELGSIH 332
           T+++ +    + +     SG ++ SIH
Sbjct: 271 TDSKFDWRDKIKS-----SGLKVDSIH 292



 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 41/124 (33%), Gaps = 23/124 (18%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           F ++ +II+ + IS L  +   SVD I  DPPY   +N +  +                 
Sbjct: 205 FNYECQIIQED-ISNLP-IKENSVDAIVTDPPYGRSVNARDVK----------------- 245

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
               +D    +       VLK  G L         +R       L    ++ I   KS  
Sbjct: 246 ----FDELYESLFFNSAEVLKKGGKLVFATDSKFDWRDKIKSSGLKVDSIHFIYLHKSLS 301

Query: 137 MPNF 140
              +
Sbjct: 302 RGIY 305


>gi|261839364|gb|ACX99129.1| hypothetical protein HPKB_0529 [Helicobacter pylori 52]
          Length = 491

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 17/114 (14%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
           +NQ +  E    +IK  +   L  L     +++D I+ DPPYN Q N  +Y  +      
Sbjct: 383 KNQFNEDEINGTLIKSENYQALNSLKNRYKETIDCIYIDPPYNTQNNEFIYADNFKRSS- 441

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
                        + +     L    ++L   G ++V    +    + T++  +
Sbjct: 442 -------------WLSMMENRLELAHKLLNDKGAMFVSIDDNEQAYLKTLMDEV 482


>gi|251793183|ref|YP_003007911.1| ribosomal protein L11 methyltransferase [Aggregatibacter
           aphrophilus NJ8700]
 gi|247534578|gb|ACS97824.1| ribosomal protein L11 methyltransferase [Aggregatibacter
           aphrophilus NJ8700]
          Length = 294

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 61/182 (33%), Gaps = 14/182 (7%)

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEK 202
           +N+   +         + +  N+  ++         S   +P  +    + +     G  
Sbjct: 81  ENSAYKIEQIEDKDWEREWMDNFHPMQFGKRLWICPSWRDVPEPNAVNVMLDPGLAFGTG 140

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYIDIA 261
            HPT    AL    L S    G  ++D   GSG     A KL     +GI++    I  +
Sbjct: 141 THPTT---ALCLEWLDSLDLKGKTVIDFGCGSGILAIAALKLGAKSAVGIDIDPQAILAS 197

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ-PGQILTNAQGNISATVCADG 320
                + +  G  +   L     +P      +V   ++  P + L      IS  V  DG
Sbjct: 198 RN---NAEQNGVADRLQLFLSDDKPSDLKADVVVANILAGPLKELYPV---ISQLVKPDG 251

Query: 321 TL 322
            L
Sbjct: 252 VL 253


>gi|308274185|emb|CBX30784.1| hypothetical protein N47_E42960 [uncultured Desulfobacterium sp.]
          Length = 666

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 59/188 (31%), Gaps = 27/188 (14%)

Query: 20  KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQ-----------------LNGQLYR 59
           ++  I+G+++  L+ L       + +I+ DPPYN                          
Sbjct: 98  QNLFIEGDNLDALKLLQETYLGKIKMIYIDPPYNTGNDFIYEDDFAESTEEYLRKSNQKD 157

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
            + + + A T+S  +F S   + +     L   R +L  +G ++       I  +  ++ 
Sbjct: 158 EEGNRLVANTESNGRFHS--DWLSMMYPRLKLARNLLSDDGLIFASIGPEEISNLKKIMD 215

Query: 120 NLNFW--ILNDIVWRKSNPMPNFR---GRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
            +       N I  ++       +     +   A E L+  S     +      +   + 
Sbjct: 216 EVFGEANYRNSIAIKRGAKSVQAQFETWDKLGTAFEYLLLYSKISTYRFPKMVRELDDSK 275

Query: 175 NEDVQMRS 182
                   
Sbjct: 276 CGGWNNHW 283



 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 42/125 (33%), Gaps = 23/125 (18%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           W     +GS  ++   G K     KP  LL +          IILD + GS T+     +
Sbjct: 376 WFHVPSTGSGIVKRLMGIKAFDNPKPLDLLKQACR-FCPNDAIILDFYAGSATTAHAIMQ 434

Query: 244 L------RRSFIGI-------EMKQDY-------IDIATKRIASV--QPLGNIELTVLTG 281
           L       R FI I       E  + +        +I  +RI     Q    +E      
Sbjct: 435 LNAEDGGNRKFIMIQLPEPCDEKSEAFKAGYKTIAEIGKERIRRAGKQIRDELEKRKDNN 494

Query: 282 KRTEP 286
           ++  P
Sbjct: 495 QKQLP 499


>gi|325135915|gb|EGC58525.1| type III restriction-modification system methyltransferase
           [Neisseria meningitidis M0579]
          Length = 644

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR---- 245
           +G++ +      KL    KP +L+  +L        +ILD F GSGT+     +L     
Sbjct: 396 NGTKEITELFKSKLFDFPKPSSLIKYLLQILHVSDGLILDFFSGSGTTAHAVMQLNAEDG 455

Query: 246 --RSFIGIEMKQDYIDIATKR 264
             R FI +++ ++  + +  R
Sbjct: 456 GCRRFICVQLPEETDEKSEAR 476



 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 28/130 (21%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLY-------RPDHSLVDAVT 69
           ++  I+  ++  L+ L    A SV +I+ DPPYN   +  +Y       R +++     T
Sbjct: 101 QNVFIEAENLEALKILQKSYAGSVKMIYIDPPYNTGNDSFVYPDKFSESREEYARRVGDT 160

Query: 70  DS-------------W-----DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
           D              W     D       + +     L   + +L+ +G +++    +  
Sbjct: 161 DDAGYLKRDGVFQGAWRKNGKDSGHYHSNWLSMMLPRLHLAKTLLREDGVIFISIDDNEQ 220

Query: 112 FRIGTMLQNL 121
            ++  +   +
Sbjct: 221 AQLKLLCDEV 230


>gi|239817554|ref|YP_002946464.1| Site-specific DNA-methyltransferase (adenine-specific) [Variovorax
           paradoxus S110]
 gi|239804131|gb|ACS21198.1| Site-specific DNA-methyltransferase (adenine-specific) [Variovorax
           paradoxus S110]
          Length = 624

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 69/213 (32%), Gaps = 29/213 (13%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNG----------------QLYRP 60
           ++ +I+G+++ VL+ L    A  + LI+ DPPYN   +                      
Sbjct: 100 QNLMIEGDNLEVLKLLQKSYAGKIKLIYIDPPYNTGKDFVYPDNFQDSIKNYLELTGQAE 159

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
               + + TD+  +F +   + +     L     +L   G +++      +  +  +   
Sbjct: 160 GGRKITSNTDASGRFHT--DWLSMIYPRLKLASSLLCQEGHIFISIDDSEVANLRAVCNE 217

Query: 121 L-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK---AANE 176
           +         +  +    P    +     H+ ++    S  A+       A +     N 
Sbjct: 218 VFGEENFVGCISWQKTYSPANDKKGIDAMHDYVVVYQRSDAARINLLPRTAKQDDAYTNP 277

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
           D   R  W     + +E          +P Q P
Sbjct: 278 DDDHRGPWKAVDATRAEHRDY----AFYPIQTP 306



 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 16/81 (19%)

Query: 204 HPTQKPEALLSRILVSST--KPGDIILDPFFGSGTSGAV------AKKLRRSFIGIEM-- 253
             T KP  L+ RIL   T    G+++LD F GSGT+         A K  R F+ +++  
Sbjct: 389 FDTPKPTRLIQRILQIGTTGNGGEVVLDFFAGSGTTAQAVLTANLADKGNRRFVLVQLPE 448

Query: 254 ---KQDYIDIAT---KRIASV 268
               + +  IA    +RI  V
Sbjct: 449 PTENKQFPTIANVTSERIRRV 469


>gi|325202336|gb|ADY97790.1| type III restriction-modification system enzyme mod [Neisseria
           meningitidis M01-240149]
 gi|325207911|gb|ADZ03363.1| DNA methylase [Neisseria meningitidis NZ-05/33]
          Length = 542

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 6/96 (6%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL----- 244
           +G++ +      KL    KP +L+  +L        +ILD F GSGT+     +L     
Sbjct: 294 NGTKEITELFKSKLFDFPKPSSLIKYLLQILHVSDGLILDFFSGSGTTAHAVMQLNAEDG 353

Query: 245 -RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
             R FI +++ ++  + +  R A    +  I    +
Sbjct: 354 GNRRFICVQLPEETDEKSEARKAGFDTIAEIAKERI 389



 Score = 43.8 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 46/126 (36%), Gaps = 28/126 (22%)

Query: 24  IKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLY-------RPDHSLVDAVTDS-- 71
           I+  ++  L+ L    A SV +I+ DPPYN   +  +Y       R +++     TD   
Sbjct: 3   IEAENLEALKILQKSYAGSVKMIYIDPPYNTGNDSFVYPDKFSESREEYARRVGDTDDAG 62

Query: 72  -----------W-----DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
                      W     D       + +     L   + +L+ +G +++    +   ++ 
Sbjct: 63  YLKRDGVFQGAWRKNGKDSGHYHSNWLSMMLPRLHLAKTLLREDGVIFISIDDNEQAQLK 122

Query: 116 TMLQNL 121
            +   +
Sbjct: 123 LLCDEV 128


>gi|291320089|ref|YP_003515347.1| type III restriction modification system:Methylase [Mycoplasma
           agalactiae]
 gi|290752418|emb|CBH40389.1| Type III restriction modification system:Methylase [Mycoplasma
           agalactiae]
          Length = 552

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 71/205 (34%), Gaps = 19/205 (9%)

Query: 51  LQLNGQLYRPDHSLVDAVTDSWDKFSSF---------EAYDAFTRAWLLACRRVLKPNGT 101
              N   +R ++ ++D    S+     F            D  +  W  +    +  NG 
Sbjct: 242 YANNIDKFRTNNFVIDTDDGSYKYSDEFVKTRGMYKLNQLDRASLTWSESLDFPISHNGK 301

Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
           ++  G     ++     ++       D  WR S          +   +  L++ +    +
Sbjct: 302 IYYPGGSEKKWQS----RHSGNHATKDWQWRWSK-----EKINWGMKNNFLVFKNNKVYS 352

Query: 162 KGYTFNYDALKAANEDVQMRS-DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
           K Y F  +  +  N D +  +  + +    G+   ++    K+    KP  LL  ++   
Sbjct: 353 KQYQFVDNNNQLVNRDSKFSNLIYSVHGSVGTSEQKDIFTNKIFDHPKPVGLLKFLINLH 412

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLR 245
                 ILD + GSGT+G    +L 
Sbjct: 413 PNKNARILDFYAGSGTTGHAVMELN 437



 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 53/135 (39%), Gaps = 17/135 (12%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKL---------PAKSV--DLIFADPPY 49
           + +KN      N N+  +  + +I G +   L+ L          +++V  D+I+ DPPY
Sbjct: 75  LLKKNESLSFNNDNN--KPANTLIIGENYDALKNLIVIERERESQSETVNYDVIYIDPPY 132

Query: 50  NLQ---LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
           N +    +G        +  +     DKFS    +       L    ++LK +G ++V  
Sbjct: 133 NTESSLTDGNNLSEKDEVSSSKFIYRDKFSRT-GWLNMLNERLRLSHQLLKEDGVIFVSI 191

Query: 107 SYHNIFRIGTMLQNL 121
                  +  ++  +
Sbjct: 192 DDSEHAYLKVLMDEI 206


>gi|315427748|dbj|BAJ49343.1| site-specific DNA-methyltransferase (adenine-specific) [Candidatus
           Caldiarchaeum subterraneum]
          Length = 401

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 2/80 (2%)

Query: 189 CSGSERLRNKDGEKLHPTQ--KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
             G  R       ++       P AL   ++   ++ GD++LDPF G GT+   A    R
Sbjct: 33  WKGFGRSWGHSLHRIMSRTGSFPPALARWVVTRFSERGDLVLDPFSGKGTAPLEACLTGR 92

Query: 247 SFIGIEMKQDYIDIATKRIA 266
             +G ++  +   +   ++ 
Sbjct: 93  VGVGNDLAPEAYVVTRAKVK 112



 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 35/94 (37%), Gaps = 21/94 (22%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPY-NLQ-----------LNGQLYRPDHSLVDAVTDS 71
              ++ S L  +  +SVDLI   PPY NLQ             G  YR     + A    
Sbjct: 245 FNMDA-SALP-IADESVDLIVTSPPYLNLQTYAWDNWLRLWFLGHDYRVVGKRLFATQ-- 300

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI 105
                S + Y  F    L    R+LKP G   ++
Sbjct: 301 -----SVKRYVEFMGRVLDEFFRMLKPGGYCVLV 329


>gi|315425973|dbj|BAJ47622.1| site-specific DNA-methyltransferase (adenine-specific) [Candidatus
           Caldiarchaeum subterraneum]
          Length = 398

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 2/80 (2%)

Query: 189 CSGSERLRNKDGEKLHPTQ--KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
             G  R       ++       P AL   ++   ++ GD++LDPF G GT+   A    R
Sbjct: 30  WKGFGRSWGHSLHRIMSRTGSFPPALARWVVTRFSERGDLVLDPFSGKGTAPLEACLTGR 89

Query: 247 SFIGIEMKQDYIDIATKRIA 266
             +G ++  +   +   ++ 
Sbjct: 90  VGVGNDLAPEAYVVTRAKVK 109



 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 35/94 (37%), Gaps = 21/94 (22%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPY-NLQ-----------LNGQLYRPDHSLVDAVTDS 71
              ++ S L  +  +SVDLI   PPY NLQ             G  YR     + A    
Sbjct: 242 FNMDA-SALP-IADESVDLIVTSPPYLNLQTYAWDNWLRLWFLGHDYRVVGKRLFATQ-- 297

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI 105
                S + Y  F    L    R+LKP G   ++
Sbjct: 298 -----SVKRYVEFMGRVLDEFFRMLKPGGYCVLV 326


>gi|225849111|ref|YP_002729275.1| modification methylase, type III R/M system [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225644056|gb|ACN99106.1| modification methylase, type III R/M system [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 1044

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 11/84 (13%)

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD--IILDPFFGSGTSGAVAKKLR----- 245
           ++L NKD   ++   KP +L+S ++  +       IILD F GSGT+     KL      
Sbjct: 761 KKLFNKD---IYTYPKPVSLVSYLISLNNLEQMNTIILDFFAGSGTTAHAVMKLNKEDGG 817

Query: 246 -RSFIGIEMKQDYIDIATKRIASV 268
            R FI +EM   +  +   RI  V
Sbjct: 818 KRKFILVEMADYFDTVIIPRIKKV 841



 Score = 42.3 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 39/100 (39%), Gaps = 17/100 (17%)

Query: 23  IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +IK  +   L  L     + V  ++ DPPYN   +  LYR ++                 
Sbjct: 481 LIKSENFQALNLLLNKYREKVKTVYIDPPYNTGSDDFLYRDNYQ--------------HS 526

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
           ++       L   + ++K +G ++V    + +  +  +++
Sbjct: 527 SWLTMMENRLKLAKELMKEDGVIFVQCDDNEVDNLNKLME 566


>gi|52550413|gb|AAU84262.1| modification methylase type II R/M system [uncultured archaeon
           GZfos9C4]
          Length = 410

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 193 ERLRNKDGEKLHPT--QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           E  R K   +LHP   +    L+   L      GD +LDPF GSGT+   A  L  + +G
Sbjct: 43  EFQRTKHVHRLHPYLGKFIPQLVEVFLKRYFTEGDTVLDPFAGSGTALIEANVLGMNSVG 102

Query: 251 IEMKQ 255
           IE+  
Sbjct: 103 IELSP 107



 Score = 40.4 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 41/147 (27%), Gaps = 18/147 (12%)

Query: 22  KIIKGNSISVLEKLPAK-SVDLIFADPPY----------NLQLNGQLYRPDHSLVDAVTD 70
           KII+G++  +  KLP    +D IF  PPY                  +     L      
Sbjct: 268 KIIQGDARKI--KLPEDFKIDGIFTSPPYVGIIDYHEQHRYAYELFGFPRQDELEIGPAA 325

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
                 S + Y              L  +  ++++ +             +      +++
Sbjct: 326 KGQNGKSKKEYQRGITEVFKNVSEYLIDDAKIFIVANDKFNLYPT-----VGKACGFELL 380

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASP 157
                P+     R      E++ +   
Sbjct: 381 DVFHRPVLMRTERDQNKYFESIFYFKK 407


>gi|282163635|ref|YP_003356020.1| hypothetical protein MCP_0965 [Methanocella paludicola SANAE]
 gi|282155949|dbj|BAI61037.1| hypothetical protein [Methanocella paludicola SANAE]
          Length = 508

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 32/58 (55%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
            +KP   +++++ +++K  DI++D F GSG +   +    R+FIG ++    I I   
Sbjct: 18  ARKPWRPINKLITTNSKERDIVVDLFVGSGVTALESISQNRNFIGYDLNPIAIFITEN 75



 Score = 39.2 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 9/88 (10%)

Query: 35  LPAKSVDLIFADPPYN--LQL------NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           L  +SVD I  DPPY   +Q              ++   + V  +  +    + +     
Sbjct: 300 LEDESVDYIITDPPYGEAIQYSELSLVWNSWLGLNYDNREEVIINPVQDKGKKEFIKLLE 359

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFRI 114
             L   RR+LK NG  + I  ++  F I
Sbjct: 360 MSLKEGRRILK-NGKKFTICFHNKEFDI 386


>gi|75760811|ref|ZP_00740828.1| Cytosine (N4) specific methyltransferase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228905390|ref|ZP_04069345.1| Modification methylase [Bacillus thuringiensis IBL 4222]
 gi|74491697|gb|EAO54896.1| Cytosine (N4) specific methyltransferase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228854210|gb|EEM98913.1| Modification methylase [Bacillus thuringiensis IBL 4222]
          Length = 430

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 11/116 (9%)

Query: 208 KPEALLSRILVSSTKP-GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
               L+ R++    K     ILDPF GSG++   A +L    +G E+      ++  ++ 
Sbjct: 47  FSVELVKRLIKEQAKRSTGTILDPFSGSGSTLIGANELGYKGLGFEVNPFSYFLSKVKLE 106

Query: 267 SV--------QPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISA 314
           +         + L    L    G    P ++F   V    +Q    L + + NI  
Sbjct: 107 NYTLGEITLFKSLFEKVLNEENGIFPMPNLSFADKVFNKEVQ--DKLMSIKKNIID 160


>gi|317055383|ref|YP_004103850.1| DNA methylase N-4/N-6 domain-containing protein [Ruminococcus albus
           7]
 gi|315447652|gb|ADU21216.1| DNA methylase N-4/N-6 domain protein [Ruminococcus albus 7]
          Length = 247

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 190 SGSERLRNKDGEKLHPTQKP----EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +       +     H  +        +   I++  ++ GD++LD F G GT+   AK L 
Sbjct: 17  TTHWSFPKRGDWATHDAKWRGNWSPYIPRNIILRYSQEGDLVLDQFAGGGTTLVEAKLLN 76

Query: 246 RSFIGIEMKQDYIDIATKRI 265
           R  IG++   + +    ++I
Sbjct: 77  RDIIGVDCNDEALTRCREKI 96



 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 45/139 (32%), Gaps = 19/139 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           + KG++  +  +   +SVDLI   PPY   +      P+      V D          + 
Sbjct: 109 LYKGDARDLYFQ-SDESVDLICTHPPYADIIKYSDGIPEDLSQLKVKD----------FL 157

Query: 83  AFTRAWLLACRRVLKPNGTL-WVIGSYHNI-------FRIGTMLQNLNFWILNDIVWRKS 134
              +     C RVLK       ++G            F +  + Q   F +   I+  + 
Sbjct: 158 EAMKPVAAECYRVLKKGKFCAVLMGDTRQKGCMIPMSFDVMKIFQEAGFTLKELIIKEQH 217

Query: 135 NPMPNFRGRRFQNAHETLI 153
           N       +     +  L+
Sbjct: 218 NCKATGYWKTNSVKYNFLL 236


>gi|291460839|ref|ZP_06025457.2| type III restriction-modification system methyltransferase
           [Fusobacterium periodonticum ATCC 33693]
 gi|291380432|gb|EFE87950.1| type III restriction-modification system methyltransferase
           [Fusobacterium periodonticum ATCC 33693]
          Length = 622

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/154 (11%), Positives = 47/154 (30%), Gaps = 18/154 (11%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS--- 77
           I+G+++ VL+ L       + +I+ DPPYN   +        + ++       + S    
Sbjct: 88  IEGDNLEVLKLLQKSYYGKIKMIYIDPPYNTGKDFVYKDNFRANIENYKKVTGQVSEEGT 147

Query: 78  ------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
                          +       L   R +L  +G +++         +  +   +    
Sbjct: 148 KLTTNTDTDGRYHSNWLNMMYPRLKLARNLLTDDGVIFISIDDSEQANLKKLCDEIFGEE 207

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
                + +         + +   HE ++    + 
Sbjct: 208 NFVADFIRKGFGGRQDSQYYAVIHEYVLCYVKNK 241



 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 83/262 (31%), Gaps = 41/262 (15%)

Query: 55  GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI 114
           G++ + D        +  +KF   +      R W    +R  +PN    ++    N    
Sbjct: 247 GKIIKKDEKYP-FYDEKKNKFYKVQ----LLRKWGENSKRQDRPNLYYSIMDPDGNEHYP 301

Query: 115 GTMLQNLNFWILNDIVWRKS--NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
                    W       ++S  N    F+ R  +      I+     + K   +      
Sbjct: 302 KLSESEDGCWRWGKEKMQESIKNGFIEFKKRDKEWVAYEKIFEPILGEEKTQLYTTIIEN 361

Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS-TKPGDIILDPF 231
            +N              +G+  L+    EK+    KP  L+  +L+        IILD F
Sbjct: 362 ISNN-------------TGASLLKLLFEEKIFNYPKPVDLIKNLLLIGGINKNSIILDFF 408

Query: 232 FGSGTSGAVAKKL------RRSFIGI-------EMKQDY-------IDIATKRIASVQPL 271
            GS T+     +L       R +I +       E  + Y        +I  +RI      
Sbjct: 409 SGSATTAHSVMQLNAEDGGNRKYIMVQLPELCDEDSEAYKAGYKNICEIGKERIRRAGEK 468

Query: 272 GNIELTVLTGKRTEPRVAFNLL 293
             ++ ++    R +  + F + 
Sbjct: 469 IKLDESLPLENREKLDIGFKVF 490


>gi|85720923|gb|ABC75873.1| M1.BtsI [Geobacillus thermoglucosidasius]
          Length = 532

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 41/122 (33%), Gaps = 15/122 (12%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSST-KPGDIILDPFFGSGTSGAVAKKLRRSF 248
                     G   +  + P  L+  +L        DI+LDPF GSGT+    + L    
Sbjct: 106 KSWSSNYGTHGWHRYVGRFPPHLVRALLNYFQADSNDIVLDPFVGSGTTLVECRLLGIPA 165

Query: 249 IGIEMKQDYIDIATKR--------------IASVQPLGNIELTVLTGKRTEPRVAFNLLV 294
           IGIE+      I+  +              IA  +           G R    V++  ++
Sbjct: 166 IGIEICPLSAMISRSKSQYTLEMADYLPELIAEFEEFYKTSWANFIGTRDLATVSYEEII 225

Query: 295 ER 296
            R
Sbjct: 226 AR 227



 Score = 37.7 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNL 51
           K+I+ + + V   +  +S+  I   PPY +
Sbjct: 334 KVIENDVLQV-NDIDNESISFIITSPPYGV 362


>gi|42784652|ref|NP_981899.1| modification methylase, putative [Bacillus cereus ATCC 10987]
 gi|42740584|gb|AAS44507.1| modification methylase, putative [Bacillus cereus ATCC 10987]
          Length = 430

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 11/116 (9%)

Query: 208 KPEALLSRILVSSTKP-GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
               L+ R++    K     ILDPF GSG++   A +L    +G E+      ++  ++ 
Sbjct: 47  FSVELVKRLIKEQAKRSTGTILDPFSGSGSTLIGANELGYKGLGFEVNPFSYFLSKVKLE 106

Query: 267 SV--------QPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISA 314
           +         + L    L    G    P ++F   V    +Q    L + + NI  
Sbjct: 107 NYTLGEITLFKSLFEQVLNEENGIFPMPNLSFADKVFNKEVQ--DKLMSIKKNIID 160


>gi|326334708|ref|ZP_08200915.1| site-specific DNA-methyltransferase (cytosine-N(4)-specific)
           [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325693158|gb|EGD35090.1| site-specific DNA-methyltransferase (cytosine-N(4)-specific)
           [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 528

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 11/92 (11%)

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSST---------K 222
             E +    +W +      E    K   +LHP +      L+   L   T         K
Sbjct: 70  WKEKLGDDLNWSLSFEQYKEAETTKHVHRLHPYKGKFIPQLVEYFLDGHTDAFKKEVFFK 129

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            GDI+LDPF GSGT+   A +L    IG+++ 
Sbjct: 130 AGDIVLDPFSGSGTTMVQASELGMHAIGVDVS 161


>gi|218515000|ref|ZP_03511840.1| putative DNA methylase protein [Rhizobium etli 8C-3]
          Length = 76

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 27/47 (57%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            P AL+S +L   TKPGD + DPF G GT+  V ++  R   GIE  
Sbjct: 28  FPGALVSALLDRFTKPGDAVFDPFVGLGTTFFVCEQRGRLPYGIEAD 74


>gi|308182750|ref|YP_003926877.1| modification methylase MjaII [Helicobacter pylori PeCan4]
 gi|308064935|gb|ADO06827.1| modification methylase MjaII [Helicobacter pylori PeCan4]
          Length = 522

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 11/75 (14%)

Query: 191 GSERLRNKDGEKLHPTQKPE--ALLSRILVSST---------KPGDIILDPFFGSGTSGA 239
             E    K   +LHP +      L+   L S T         K GDI+LD F GSGT+ A
Sbjct: 82  FKEAQTTKHIHRLHPYKGKFIPQLVEYFLDSHTDTLKEQVFFKKGDIVLDLFCGSGTTLA 141

Query: 240 VAKKLRRSFIGIEMK 254
           VA +L  + +G+E+ 
Sbjct: 142 VANELGLNAVGLELS 156


>gi|225377660|ref|ZP_03754881.1| hypothetical protein ROSEINA2194_03311 [Roseburia inulinivorans DSM
           16841]
 gi|225210524|gb|EEG92878.1| hypothetical protein ROSEINA2194_03311 [Roseburia inulinivorans DSM
           16841]
          Length = 232

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 20/89 (22%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGI-- 251
            + L    KP  ++ +++   +   DIILD F GS T+     +L       R FI +  
Sbjct: 58  NKYLFDFPKPVEVIKQLVSQVSNTDDIILDFFSGSATTAHAVMQLNAEDGGNRRFILVQL 117

Query: 252 -----EMKQDY-------IDIATKRIASV 268
                E  + Y        +I  +RI   
Sbjct: 118 PELCDEKSEAYKTGYKNICEIGKERIRRA 146


>gi|253686645|ref|YP_003015835.1| ribosomal protein L11 methyltransferase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|259534546|sp|C6DIJ9|PRMA_PECCP RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|251753223|gb|ACT11299.1| ribosomal protein L11 methyltransferase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 295

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 45/131 (34%), Gaps = 10/131 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   IP  +    + +     G   HPT    AL  + 
Sbjct: 95  WEREWMDNFHPMQFGKRLWICPSWRDIPDPTAVNVMLDPGLAFGTGTHPTT---ALCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  I+D   GSG     A KL     IGI++    I  +     + Q  G  E
Sbjct: 152 LDGLDLEGKTIIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRD---NAQRNGVSE 208

Query: 276 LTVLTGKRTEP 286
              L   + +P
Sbjct: 209 RLELYLPKDQP 219


>gi|227114012|ref|ZP_03827668.1| ribosomal protein L11 methyltransferase [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 295

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 45/131 (34%), Gaps = 10/131 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   IP  +    + +     G   HPT    AL  + 
Sbjct: 95  WEREWMDNFHPMQFGKRLWICPSWRDIPDPTAVNVMLDPGLAFGTGTHPTT---ALCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  I+D   GSG     A KL     IGI++    I  +     + Q  G  E
Sbjct: 152 LDGLDLEGKTIIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRD---NAQRNGVSE 208

Query: 276 LTVLTGKRTEP 286
              L   + +P
Sbjct: 209 RLELYLPKDQP 219


>gi|145637602|ref|ZP_01793258.1| Adenine specific DNA methylase Mod [Haemophilus influenzae PittHH]
 gi|145269199|gb|EDK09146.1| Adenine specific DNA methylase Mod [Haemophilus influenzae PittHH]
          Length = 523

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 8/79 (10%)

Query: 194 RLRNKDGEKLHPT-QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RR 246
           +   K+G   +P  +KP  L+ ++    T+  D+ILD F GSGT+G     L       R
Sbjct: 257 KNLTKEGGVPYPNGKKPMKLIKQLAYMVTEENDLILDFFAGSGTTGHSIMHLNTEDLGNR 316

Query: 247 SFIGIEMKQDYIDIATKRI 265
            FI +++ ++ +D A  R+
Sbjct: 317 QFILVQINEN-LDSALSRM 334


>gi|332827400|gb|EGK00152.1| hypothetical protein HMPREF9455_03484 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 377

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 2/93 (2%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           + T  P +   ++L  + K  D++ DPF G GT+   A+ L  S  G++       IA  
Sbjct: 25  YFTMFPLSFPYKVLRYA-KKTDLVYDPFCGRGTTNFAARLLGMSSYGVDSNPIAQAIAQA 83

Query: 264 RIASVQPLG-NIELTVLTGKRTEPRVAFNLLVE 295
           ++    P+        +        +      E
Sbjct: 84  KLIHANPIDIQDRCQTILQGDYYFDIPTGDFWE 116


>gi|21234060|ref|NP_639637.1| hypothetical protein SCP1.62 [Streptomyces coelicolor A3(2)]
 gi|21234290|ref|NP_639901.1| hypothetical protein SCP1.291c [Streptomyces coelicolor A3(2)]
 gi|13620546|emb|CAC36584.1| hypothetical protein [Streptomyces coelicolor A3(2)]
 gi|13620777|emb|CAC36817.1| hypothetical protein [Streptomyces coelicolor A3(2)]
          Length = 137

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 286 PRVAFNLLVERGLIQPGQILTNAQGNIS----ATVCADGTLISGTELG---SIHRVGAKV 338
           P      L++  LI+ G +LT  Q        A V ADG LI         S  +    V
Sbjct: 45  PHGPLAELMQADLIKAGTVLTFHQRRAKRSGRAVVTADGQLIVDGHASPFPSPSKAAEAV 104

Query: 339 SGSETCNGWNFWYFEKLGELHSINTLRILVRK 370
           +G+   NGW  W+ E +G    ++ LR  +  
Sbjct: 105 TGN-VINGWTLWHVEGVGRT--LDDLRRELDS 133


>gi|163796548|ref|ZP_02190507.1| DNA methylase N-4/N-6 [alpha proteobacterium BAL199]
 gi|159178108|gb|EDP62653.1| DNA methylase N-4/N-6 [alpha proteobacterium BAL199]
          Length = 625

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 15/136 (11%)

Query: 3   QKNSLAINENQNSIFEWKDKI--IKGNSISVLEKLPAKSVDLIFADPPYNLQLNG-QLYR 59
           ++    I +   SI +   KI  I G+S +V   LP+ S+D +F DPP+   +   +L  
Sbjct: 377 RRKLTTIAQAFESIHDGSGKIEVIHGSSCNV--GLPSGSIDYVFTDPPFGANIPYAELSF 434

Query: 60  PDHSLVDAVTD-------SWDKFSSFEAYDAFTRAWLLACRRVLKPNG---TLWVIGSYH 109
            + + +   TD       S D+  + + Y           RR+LKP+G    ++   S  
Sbjct: 435 INEAWLKIFTDRTDEAIVSPDQGKAIDEYRELLTRSFSEARRILKPSGKATMVFHSASAE 494

Query: 110 NIFRIGTMLQNLNFWI 125
               +    Q+  F +
Sbjct: 495 VWNALQRAYQDAGFDV 510



 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 24/43 (55%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           +PT+     ++  + + TKPGD + D F GSGT+G  A    R
Sbjct: 42  YPTKISPEAIALYIAAHTKPGDTVFDGFGGSGTTGLAALLCER 84


>gi|160936294|ref|ZP_02083664.1| hypothetical protein CLOBOL_01187 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440763|gb|EDP18494.1| hypothetical protein CLOBOL_01187 [Clostridium bolteae ATCC
           BAA-613]
          Length = 675

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 58/157 (36%), Gaps = 28/157 (17%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYN------------------LQLNGQLYRPDH 62
           I+G+++ VL+ L       + +I+ DPPYN                  L  +GQ     +
Sbjct: 102 IEGDNLEVLKLLQETYLGKIKMIYIDPPYNTGHDFVYEDDFSQSSNEYLSNSGQFDDAGN 161

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
            LV A T+S  +F +   +       L   + +L  +G +++    +    +  +   + 
Sbjct: 162 RLV-ANTESNGRFHT--DWLNMMYPRLRLAKDLLTEDGVIFISIDDNEQCNLVKLCDEVF 218

Query: 123 --FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
                +  I+  K N   +      Q  HE ++    
Sbjct: 219 GAENCIGPIIQNKQNAKNDTVN--IQKNHEFILVYRK 253



 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 31/97 (31%), Gaps = 20/97 (20%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMK 254
             +    K   ++  ++        I+LD F GS T+     +        R FI +++ 
Sbjct: 440 NAVFSNPKNLEMIKYLIQLVADKSFIVLDFFSGSATTAHAVMQANAEDGGKRRFIMVQIS 499

Query: 255 QD-------Y-------IDIATKRIASVQPLGNIELT 277
           ++       Y        +I  +RI         E  
Sbjct: 500 EETEDKSDAYKAGYKTICEIGKERIRRAAKKIAEENP 536


>gi|189461561|ref|ZP_03010346.1| hypothetical protein BACCOP_02220 [Bacteroides coprocola DSM 17136]
 gi|189431671|gb|EDV00656.1| hypothetical protein BACCOP_02220 [Bacteroides coprocola DSM 17136]
          Length = 281

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 57/165 (34%), Gaps = 24/165 (14%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPD------------------H 62
           I+G+++ VL+ L       V +I+ DPPYN   N  +Y  D                   
Sbjct: 105 IEGDNLEVLKLLQKSYMGKVKMIYIDPPYNTG-NDFVYDDDFAVSQDDYDLFSGNVDELG 163

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
           +     T+S  +F S   + +     L+  + +L  +G++++    H I     ++  + 
Sbjct: 164 NRYRKNTESNGRFHS--DWCSMMYPRLMVAKSLLSDSGSIFLTLDDHEIVNGRKLMDEIF 221

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
                       N            AH  ++  S + +      N
Sbjct: 222 GEKSFISTVIWENFYGRSNAAAISLAHNYILIYSKAGEEWKNIRN 266


>gi|304311921|ref|YP_003811519.1| Type III DNA modification methyltransferase [gamma proteobacterium
           HdN1]
 gi|301797654|emb|CBL45875.1| Type III DNA modification methyltransferase [gamma proteobacterium
           HdN1]
          Length = 662

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 58/153 (37%), Gaps = 22/153 (14%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRP---------------- 60
           ++ +I+G+++ VL+ L    A  V LI+ DPPYN   +                      
Sbjct: 106 QNLMIEGDNLEVLKLLQKSYAGKVKLIYIDPPYNTGKDFVYPDNFQDNIKNYLELTGQVE 165

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
               + + T++  +F +   +       L   R +L+ +G L V      I  + ++  +
Sbjct: 166 GGQKISSNTEASGRFHT--DWLNMMYPRLKLARNLLRDDGVLMVSVDDAEIDHMKSVCTD 223

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           +        +   +      +G  F+  HE +I
Sbjct: 224 IFGEENMLAILIWNKQHSQQQG-VFKRYHEYVI 255



 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 50/143 (34%), Gaps = 31/143 (21%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
           G  +    KP  +++  +       D++LD F GSGT+G    ++       R +I +++
Sbjct: 408 GAAVFQNPKPVNMIADFVSWFANSDDLVLDFFSGSGTTGESVLRVNSTNGGSRRYILVQL 467

Query: 254 KQDYIDIATKRIASVQPLGNIELTVLT--GKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
            +            + P    + T      +  +PR               ++       
Sbjct: 468 PE-----------PLDPDNKDQKTAANFCDQLGKPR------------SIAELTKERLRR 504

Query: 312 ISATVCADGTLISGTELGSIHRV 334
            +A V AD  + +G     + ++
Sbjct: 505 AAAKVKADNPMFAGDTGFRVFKL 527


>gi|118575798|ref|YP_875541.1| adenine specific DNA methylase [Cenarchaeum symbiosum A]
 gi|118194319|gb|ABK77237.1| adenine specific DNA methylase [Cenarchaeum symbiosum A]
          Length = 585

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++KP  ++   +   ++PG+I+LDPF GSG S   +  L R  IGI++  
Sbjct: 72  SKKPFNVVRSYIKEYSRPGEIVLDPFCGSGISNTESLVLGRRTIGIDINP 121



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 12/91 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADP------PYNLQLNGQLYRPDHSLVDA-----VTDS 71
           ++  +    L  +P  SVD I  DP      PY ++L+        S  DA     ++DS
Sbjct: 359 LLNADCYRTLSSMPGGSVDYIITDPPHGDRLPY-MELSAMWNGWMGSSADAEEELVISDS 417

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTL 102
            ++  +  AY+A     L    RVL+P   L
Sbjct: 418 PERDKTPAAYNAQMARILSEAERVLRPGRHL 448


>gi|323140969|ref|ZP_08075881.1| DNA (cytosine-5-)-methyltransferase [Phascolarctobacterium sp. YIT
           12067]
 gi|322414572|gb|EFY05379.1| DNA (cytosine-5-)-methyltransferase [Phascolarctobacterium sp. YIT
           12067]
          Length = 418

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 60/192 (31%), Gaps = 33/192 (17%)

Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL 213
           +    P   G         A ++     ++W     S       K+ +      K + L+
Sbjct: 138 FVRRIPNGTGKNGGVQHWVAPSDTALRTNNWTDIEVS----QIGKEIQLPFDNPKSKQLI 193

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGI-------EMKQDY--- 257
           + ++       DIILD F GS T+     +L       R FI +       E  + Y   
Sbjct: 194 AELIRLCGCKNDIILDFFSGSATTAHAVMQLNAEDGGKRKFIMVQLPEVCAENSEAYKAG 253

Query: 258 ----IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL------VERGLIQPGQILTN 307
                +I  +RI         E  + T    +  + F +L      +E     P + +  
Sbjct: 254 YKNICEIGKERIRRAGKKIKEENPLTT---QDLDIGFRVLKCDSSNMEDVYFTPKEYMDK 310

Query: 308 AQGNISATVCAD 319
            Q      +  D
Sbjct: 311 QQSLFVDNIKKD 322


>gi|189218335|ref|YP_001938977.1| adenine-specific DNA methylase containing a Zn-ribbon
           [Methylacidiphilum infernorum V4]
 gi|189185193|gb|ACD82378.1| Adenine-specific DNA methylase containing a Zn-ribbon
           [Methylacidiphilum infernorum V4]
          Length = 731

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 35/104 (33%), Gaps = 23/104 (22%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQLNG----QLYRPDHSLVDAVTDSWDKF---------- 75
             L ++P  ++DLI  DPPY   L+       Y   H  +      +D            
Sbjct: 498 EDLSEIPDGTIDLILTDPPYFDNLSYSELSDFYLAWHQSLGEAEPPFDDPHLAAPIGENL 557

Query: 76  -------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
                   S   Y    R     C+RVLK NG      +YH+  
Sbjct: 558 ALTSRDDESIAVYRERLRRIFSECQRVLKRNGVFVF--TYHHKH 599



 Score = 42.7 bits (99), Expect = 0.096,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 20/53 (37%)

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278
           ++LDPF G GTS   A +     IG ++      I    + +       E   
Sbjct: 105 VVLDPFVGGGTSLVEAMRCGAHVIGYDIDPIATFITRFELEAATYDPESEEIA 157


>gi|238794626|ref|ZP_04638232.1| Ribosomal protein L11 methyltransferase [Yersinia intermedia ATCC
           29909]
 gi|238726015|gb|EEQ17563.1| Ribosomal protein L11 methyltransferase [Yersinia intermedia ATCC
           29909]
          Length = 293

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 47/131 (35%), Gaps = 10/131 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    AL  + 
Sbjct: 95  WEREWMDNFHPMRFGERLWICPSWRDVPDPTAVNVMLDPGLAFGTGTHPTT---ALCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S +  G  ++D   GSG     A KL     IGI++    I  +     + Q  G  E
Sbjct: 152 LDSLSLDGKTVIDFGCGSGILAIAALKLGATRAIGIDIDPQAIQASRD---NAQRNGVSE 208

Query: 276 LTVLTGKRTEP 286
              L   + +P
Sbjct: 209 RLELYLAKDQP 219


>gi|167044428|gb|ABZ09104.1| putative DNA methylase [uncultured marine crenarchaeote
           HF4000_APKG6D9]
          Length = 463

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 38/116 (32%), Gaps = 2/116 (1%)

Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI-PICSGSERLRNKDGEKL 203
                E +     +        N+  ++  N    M  ++ I P  + S           
Sbjct: 18  RTKNKEIIFQMFNANLTLTQIKNFIPVEYTNFASIMEFEYKIRPYPTFSPNKNRPVHNWF 77

Query: 204 HPTQ-KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           + TQ   + L+   L  + K    + DPF G GT+     +      GI++    +
Sbjct: 78  NYTQGFSKNLIDFCLDLTIKKPRFVFDPFSGVGTTSLSCLEHGIKSTGIDISPLAV 133


>gi|307273972|ref|ZP_07555182.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0855]
 gi|306509280|gb|EFM78340.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0855]
          Length = 659

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 60/166 (36%), Gaps = 19/166 (11%)

Query: 17  FEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
            E ++  I+G+++ VL+ L    A  V LI+ DPPYN   +       H  +    +   
Sbjct: 89  DETQNLYIEGDNLEVLKILQKSYANKVKLIYLDPPYNTGHDFVYQDNFHDTIKNYLEETG 148

Query: 74  KFSS---------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
           +  S                  +       L   R +L  +G +++  S   +  +  ++
Sbjct: 149 QVDSDGHKYSHNSETSGRFHTDWLNMIYPRLKLGRNLLTDDGLIFISISDDEVSNLLNVM 208

Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
             L     N +     +   + +   F+  HE ++  + +    G+
Sbjct: 209 DELFGE-TNHLATLIWDKNHSAQAGSFKVYHEYVVVYAKNVNEIGH 253



 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 53/155 (34%), Gaps = 28/155 (18%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-----RSFIGI---EMKQ 255
             + KP  ++   +   T+  DII+D F GSG++     +       R +I +   E   
Sbjct: 403 FDSPKPVGMMKTFIDWYTEDEDIIMDFFSGSGSTAESVMETTASGQLRKYILVSLPENLD 462

Query: 256 DYIDIATK--------RIASVQPLGN----IELTVLTGKRTEPRVAFNLLVERGLIQPGQ 303
           D + +A K         I  +  LG      E+     K    ++A    V      PG 
Sbjct: 463 DALKVAQKDAVKTLETAIDVLDKLGRPHVLTEIAEERIKLAGEKIAKGENVNEDTFDPGF 522

Query: 304 ILTNAQG---NISATVCAD-----GTLISGTELGS 330
            +   +        T   D     GT+    E GS
Sbjct: 523 KVFELEKSNLKKWNTEPEDLVTMLGTIQDNLEPGS 557


>gi|208435262|ref|YP_002266928.1| type III restriction enzyme M protein [Helicobacter pylori G27]
 gi|208433191|gb|ACI28062.1| type III restriction enzyme M protein [Helicobacter pylori G27]
          Length = 475

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 17/103 (16%)

Query: 22  KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
            +IK  +   L  L     +++D I+ DPPYN Q N  +Y  +                 
Sbjct: 377 TLIKSENYQALNSLKNRYKEAIDCIYIDPPYNTQNNEFVYADNFKRSS------------ 424

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
             + A     L   R++L   G ++V    +       ++  +
Sbjct: 425 --WLAMMENRLELARKLLNDKGAMFVSIDDNEQAYCKALMDEV 465


>gi|253991186|ref|YP_003042542.1| ribosomal protein L11 methyltransferase [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253782636|emb|CAQ85800.1| ribosomal protein L11 methyltransferase [Photorhabdus asymbiotica]
          Length = 296

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 52/144 (36%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++  N      S   +P       + +     G   HPT    +L  + 
Sbjct: 95  WEREWMDNFHPMRFGNRLWVCPSWREVPDPDAVNVMLDPGLAFGTGTHPTT---SLCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  I+D   GSG     A KL     IGI++    I  +     + +  G +E
Sbjct: 152 LDSLDLTGKTIIDFGCGSGILAIAALKLGAAHAIGIDIDPQAIQASRD---NAERNGVVE 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L   + +P    + +V   ++
Sbjct: 209 RLTLYLAKDQPNDLESDVVIANIL 232


>gi|199598291|ref|ZP_03211711.1| Adenine specific DNA methylase Mod [Lactobacillus rhamnosus HN001]
 gi|199590744|gb|EDY98830.1| Adenine specific DNA methylase Mod [Lactobacillus rhamnosus HN001]
          Length = 391

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 6/68 (8%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIE 252
           DG     T KP  L+ R L         +LD F GS T+     +L       R FI  +
Sbjct: 124 DGVSPFGTPKPVELIKRFLELQNDDDATVLDFFAGSSTTAEAVMQLNVEDGGHRKFIMAQ 183

Query: 253 MKQDYIDI 260
           + +    I
Sbjct: 184 LPEKTYHI 191


>gi|188528158|ref|YP_001910845.1| Adenine-specific DNA methylase [Helicobacter pylori Shi470]
 gi|188144398|gb|ACD48815.1| Adenine-specific DNA methylase [Helicobacter pylori Shi470]
          Length = 480

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 17/117 (14%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
           +N  S  E    +IK  +   L  L     +++D I+ DPPYN Q N  +Y  +      
Sbjct: 366 KNLFSEDEINGTLIKSENYQALNSLKNRYKETIDCIYIDPPYNTQNNEFIYADNFKRSS- 424

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
                        + +     L    ++L   G ++V    +    +  ++  +  W
Sbjct: 425 -------------WLSMMANRLELAHKLLNDKGVMFVSIDDNEQAYLKALMDEVFKW 468


>gi|160941925|ref|ZP_02089251.1| hypothetical protein CLOBOL_06820 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435157|gb|EDP12924.1| hypothetical protein CLOBOL_06820 [Clostridium bolteae ATCC
           BAA-613]
          Length = 631

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 53/149 (35%), Gaps = 14/149 (9%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQ----LNGQLYRPDHSLVDA----VTDSW 72
           I+G+++ VL+ L       V +I+ DPPYN             P    ++        + 
Sbjct: 93  IEGDNLEVLKLLQKSYFCGVKMIYIDPPYNTGNDFVYEDDFADPMRRYMEVTQQTTKSNP 152

Query: 73  DKFSSFE-AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDI 129
           +    +   +       L     +L+ +G +++  +   I  +  +          + D+
Sbjct: 153 ETMGRYHTNWLNMMYPRLRLAANLLRDDGVIFISINDSEITNLRKLCDETFGEENFVVDL 212

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPS 158
           +W       +   + F+  HE ++    +
Sbjct: 213 IWTNKEGGGSSDSKLFRIKHEHILCYCKN 241



 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 52/154 (33%), Gaps = 36/154 (23%)

Query: 202 KLHPTQKPEALLSRILVSSTKP--GDIILDPFFGSGTSGAVAKKL------RRSFIGI-- 251
           K+    KP  L+  ++    K    D+ILD F GS T+     +L       R FI +  
Sbjct: 384 KVFDYSKPVDLIIYLMQRVLKEKSNDLILDFFSGSATTAHAIMQLNAKDGGNRRFIMVQL 443

Query: 252 -----EMKQDY-------IDIATKRIASVQPL---GNIELTVLTGKRTEPRVAFNL---- 292
                +  + Y        +I  +RI  +       +   T L G +    V F +    
Sbjct: 444 PEVCDDKSEAYKAGYTNICEIGKERIRRIGKKVLEADGGQTSLDGDKPSIDVGFKVFKLD 503

Query: 293 -----LVERGLIQPGQI--LTNAQGNISATVCAD 319
                L E   I+ G +  L N        +  D
Sbjct: 504 TSNLKLWEDTPIEDGDVATLFNRIDKHIDGLKPD 537


>gi|269140490|ref|YP_003297191.1| ribosomal protein L11 methyltransferase [Edwardsiella tarda EIB202]
 gi|267986151|gb|ACY85980.1| ribosomal protein L11 methyltransferase [Edwardsiella tarda EIB202]
 gi|304560281|gb|ADM42945.1| Ribosomal protein L11 methyltransferase [Edwardsiella tarda FL6-60]
          Length = 293

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 55/175 (31%), Gaps = 12/175 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   IP       + +     G   HPT    AL  + 
Sbjct: 95  WEREWMDNFHPMQFGRRLWICPSWREIPEPDAVNVMLDPGLAFGTGTHPTT---ALCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG     A KL     IGI++    I  +     + +  G  E
Sbjct: 152 LDGLDLAGKTVIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRD---NAERNGVSE 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGS 330
              L   + +P      +V   ++     L      I      DG L     L S
Sbjct: 209 RLELYLPKDQPADLSADVVVANIL--AGPLRELAPLIGCLPRQDGLLGLSGILAS 261


>gi|256384078|gb|ACU78648.1| Type III restriction-modification system (MmyCI) adenine DNA
           methyltransferase subunit [Mycoplasma mycoides subsp.
           capri str. GM12]
          Length = 564

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 64/202 (31%), Gaps = 24/202 (11%)

Query: 23  IIKGNSISVLEKL-----------PAKSVDLIFADPPYNLQ---LNGQLYRPDHSLVDAV 68
           +I G +   L+ L            A + D+I+ DPPYN +    +G        + +  
Sbjct: 91  LIIGENYDALKNLIVAEREREREQGAANFDVIYIDPPYNTESSLTDGNNLSEKDDVSNKK 150

Query: 69  TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL----NFW 124
               DKFS    +       L+   ++LK +G ++V         +  ++  +    NF 
Sbjct: 151 FIYRDKFSRT-GWLNMLNERLIMAHQLLKDDGVIFVSIDDSEQAYLKVLMDEIFGEENFV 209

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
                V +K          +     E ++  +   +   + +     K   +      D 
Sbjct: 210 ANISWVKKKGPGGNTSLNYKIVKNTEYILVYAKEKEKTKFNYKIHNEKTLKDLGYTNKDE 269

Query: 185 LIPICSGSERLRNKDGEKLHPT 206
                    R   K     HP+
Sbjct: 270 YFST-----RGFYKTTLLFHPS 286



 Score = 50.0 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 37/128 (28%)

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
               +      + K N +     ++ ++                          A ++ +
Sbjct: 319 ESGCYTWGYDAYLKGNELGFIECKKNKDNKWVAYRKQYQFVKFDPKNENIIFVNAGQEYE 378

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
              D +     G E       +      KP  L+  ++         +LD + GSGT+G 
Sbjct: 379 NIIDDIFSSNGGEEIKSIFSDKNKFDFPKPSDLIKYLINIHPNKNAKVLDFYAGSGTTGH 438

Query: 240 VAKKLRRS 247
              +L R 
Sbjct: 439 AVLELNRQ 446


>gi|269123803|ref|YP_003306380.1| putative RNA methylase [Streptobacillus moniliformis DSM 12112]
 gi|268315129|gb|ACZ01503.1| putative RNA methylase [Streptobacillus moniliformis DSM 12112]
          Length = 249

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 5/95 (5%)

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
            +  N +++M + W  P          K      P      +   +L+  +K  D++LD 
Sbjct: 9   WEPENFELEMNTHWSFPKRGDWATHDAKWRGNWSPY-----IPRNLLLRYSKENDLVLDQ 63

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           F G GT+   AK L R  IG+++ +  ++   +++
Sbjct: 64  FAGGGTTLVEAKLLNRDIIGVDINEVSLERCREKV 98



 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 49/141 (34%), Gaps = 23/141 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE--A 80
           I KG++ + L+ +  +S+D I   PPY             +++    +  +  S  +   
Sbjct: 111 IHKGDARN-LDFISDESIDFICTHPPY------------ANIIQYSDNIEEDLSHLKIPQ 157

Query: 81  YDAFTRAWLLACRRVLKPNGTL-WVIGSYH-------NIFRIGTMLQNLNFWILNDIVWR 132
           +    +       RVLK +     ++G            F +  + ++  F +   I+  
Sbjct: 158 FLEEMKKVAFESYRVLKNDKFCAVLMGDTRIKGYMQPMSFEVMKIFESEGFKLKEIIIKE 217

Query: 133 KSNPMPNFRGRRFQNAHETLI 153
           + N       +     +  L+
Sbjct: 218 QHNCRATGYWKTNSIKYNFLL 238


>gi|261819598|ref|YP_003257704.1| ribosomal protein L11 methyltransferase [Pectobacterium wasabiae
           WPP163]
 gi|261603611|gb|ACX86097.1| ribosomal protein L11 methyltransferase [Pectobacterium wasabiae
           WPP163]
          Length = 295

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 45/131 (34%), Gaps = 10/131 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   IP  S    + +     G   HPT    +L  + 
Sbjct: 95  WEREWMDNFHPMQFGKRLWICPSWREIPDPSAVNVMLDPGLAFGTGTHPTT---SLCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  I+D   GSG     A KL     IGI++    I  +     + Q  G  E
Sbjct: 152 LDGLDLEGKTIIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRD---NAQRNGVSE 208

Query: 276 LTVLTGKRTEP 286
              L   + +P
Sbjct: 209 RLELYLPKDQP 219


>gi|50119218|ref|YP_048385.1| ribosomal protein L11 methyltransferase [Pectobacterium
           atrosepticum SCRI1043]
 gi|60390386|sp|Q6DAJ5|PRMA_ERWCT RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|49609744|emb|CAG73178.1| ribosomal protein L11 methyltransferase [Pectobacterium
           atrosepticum SCRI1043]
          Length = 295

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 45/131 (34%), Gaps = 10/131 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   IP  S    + +     G   HPT    +L  + 
Sbjct: 95  WEREWMDNFHPMQFGKRLWICPSWREIPDPSAVNVMLDPGLAFGTGTHPTT---SLCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  I+D   GSG     A KL     IGI++    I  +     + Q  G  E
Sbjct: 152 LDGLDLEGKTIIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRD---NAQRNGVSE 208

Query: 276 LTVLTGKRTEP 286
              L   + +P
Sbjct: 209 RLELYLPKDQP 219


>gi|319776006|ref|YP_004138494.1| methyltransferase [Haemophilus influenzae F3047]
 gi|317450597|emb|CBY86814.1| predicted methyltransferase [Haemophilus influenzae F3047]
          Length = 711

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 20/110 (18%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N+I   + K+I+ + +  LEK   +  DLIF DPP              S    + DSWD
Sbjct: 593 NNIEGKQHKLIQADCLQWLEKC-DRQFDLIFVDPP------------TFSNSKRMEDSWD 639

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
                          +   +RVL  NGT+    +          L+ L F
Sbjct: 640 VQRDH-------VKLMRNLKRVLLNNGTIVFSNNKRGFKMNLVALEELGF 682


>gi|228873813|ref|YP_204670.2| 23S rRNA m(2)G2445 methyltransferase [Vibrio fischeri ES114]
 gi|229889498|sp|Q5E5B4|RLML_VIBF1 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
          Length = 705

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 22/140 (15%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N N N     + + ++ + +  L++      DLIF DPP         +     +     
Sbjct: 581 NMNTNGQTGTQHQFLQADCLQWLQQ-ADGEFDLIFIDPP--------TFSNSKRMEQTFD 631

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
              D     E             +R+L+ NGT+    +  N       L+       N  
Sbjct: 632 VQRDHIMLLE-----------NLKRMLRENGTIVFSNNKRNFKMDEAGLEKAGLKAKN-- 678

Query: 130 VWRKSNPMPNFRGRRFQNAH 149
           + +++ P+   R +   N  
Sbjct: 679 ISKQTLPLDFARNKHIHNCW 698


>gi|34762306|ref|ZP_00143310.1| TYPE III RESTRICTION-MODIFICATION SYSTEM METHYLATION SUBUNIT
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|27888028|gb|EAA25091.1| TYPE III RESTRICTION-MODIFICATION SYSTEM METHYLATION SUBUNIT
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
          Length = 525

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 20/115 (17%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGI- 251
            G K+    K   ++ + +   +   DIILD F GS T+     +L       R +I + 
Sbjct: 279 KGNKVFEFPKSLNMIKKTIEIGSNNSDIILDFFSGSATTAHSVMQLNAEDEGNRKYIMVQ 338

Query: 252 ------EMKQDY-------IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
                 E  + Y        +I  +RI         + ++L   R +  + F + 
Sbjct: 339 LPELCDESSEAYKAGYKNICEIGKERIRRAGEKIKSDESLLIENREKLDIGFKVF 393



 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 40/132 (30%), Gaps = 17/132 (12%)

Query: 42  LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF---------------SSFEAYDAFTR 86
           +I+ DPPYN   +          ++   +   +                     +     
Sbjct: 1   MIYIDPPYNTGKDFVYKDNFKDNIENYKEITGQINKEGIKLTTNTETNGRYHSDWLNMMY 60

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRF 145
             L   R +L  +G +++    + I  +  +   +       +++   +NP     G   
Sbjct: 61  PRLKLARNLLTDDGVIFISIDNNEIHNLRKICDEIFGEENFIEVITVINNPRGRDYGG-I 119

Query: 146 QNAHETLIWASP 157
            N HE L+    
Sbjct: 120 ANMHEYLLVYKK 131


>gi|34762959|ref|ZP_00143938.1| Sensor protein fixL [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|27887382|gb|EAA24473.1| Sensor protein fixL [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 247

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 4/95 (4%)

Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP----EALLSRILVSSTKPGDIILDP 230
            ++ +   D      +     + +     H  +        +   +++  T   D+ILD 
Sbjct: 3   KKNKKWEPDNFELELNSVWSFKERGDWATHDAKWRGNWSPYIPRNLILRYTNEEDLILDQ 62

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           F G GT+   AK L R+ IG+++    I+   ++I
Sbjct: 63  FIGGGTTLVEAKLLNRNIIGVDVNNVAIERCKEKI 97



 Score = 36.5 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 52/163 (31%), Gaps = 30/163 (18%)

Query: 12  NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
           N N     K  I KG++   L+ +  +++D I   PPY             ++++   D 
Sbjct: 98  NFNFENSGKVYIHKGDARK-LDFIKDETIDFICTHPPY------------ANIIEYSEDI 144

Query: 72  WDKFSSFE--AYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNI-------FRIGTMLQNL 121
            +  S  +   +    +       RVLK +     ++G            F +  + +  
Sbjct: 145 EEDLSHLKIPEFLKEMKKVASESYRVLKKDKFCAILMGDTRIKGHIQPLGFEVMKVFEAE 204

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQ-------NAHETLIWASP 157
            F +   I+  + N       +           AHE L     
Sbjct: 205 GFKLKEIIIKEQHNCKATGYWKTNSIKYNFFLIAHEYLFVFKK 247


>gi|320105183|ref|YP_004180774.1| ParB domain-containing protein nuclease [Isosphaera pallida ATCC
           43644]
 gi|319752465|gb|ADV64225.1| ParB domain protein nuclease [Isosphaera pallida ATCC 43644]
          Length = 518

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 185 LIPICSGSERL-RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
             P          ++     HP   P  ++++ L   T PGD+++DP  G G +  VA  
Sbjct: 264 FQPTPYDVWHFRHDRAYGVHHPGSIPPGIVAQTLHYYTAPGDLVVDPLAGGGVTLDVADA 323

Query: 244 LRRSFIGIEMKQ 255
           + R  +  +++ 
Sbjct: 324 MGRRCLAYDIEP 335



 Score = 39.6 bits (91), Expect = 0.78,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 11/68 (16%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           L A+  DL+F DPPY   L            DA  D+    +  E +  F R        
Sbjct: 351 LEAQPADLVFLDPPYFTML-----------ADAYPDAGASRTHLEGWKRFLRRLAQVAFE 399

Query: 95  VLKPNGTL 102
            L+P G +
Sbjct: 400 ALRPGGYV 407


>gi|167957119|ref|ZP_02544193.1| adenine specific DNA methylase Mod [candidate division TM7
           single-cell isolate TM7c]
          Length = 429

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 60/199 (30%), Gaps = 24/199 (12%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN-------GQLYRPDHSLVDAVTD 70
           +  I+G++++ L+ L       V +I+ DPPYN   +        Q  R   +      D
Sbjct: 85  NMFIEGDNLAALKILHKAYYGKVKMIYIDPPYNTGNDFIYNDDSKQTRRSYETEAGITDD 144

Query: 71  SWDKFSS-----------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
             +                  +       L   R +L+ +G ++V    + +  +  M+ 
Sbjct: 145 EGNVVRDDGLRTNTGGHKHSNWLNMMYPRLFLARNLLRQDGVIFVSIDDNEVHNLRLMMN 204

Query: 120 NL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETL--IWASPSPKAKGYTFNYDALKAANE 176
            +         V  +         + F   H+ +  I        +      +    +N 
Sbjct: 205 EIFGEENFVAQVIWEKVHTRKNSAQYFSYNHDYVVTIARKKDEWKRKLIPRENNSAYSNP 264

Query: 177 DVQMRSDWLIPICSGSERL 195
           D   +  W +     +   
Sbjct: 265 DNDPKGVWKLDPIYANNPY 283



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 8/59 (13%)

Query: 201 EKLHPTQKPEALLSRI--LVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGI 251
           E L    KP  L+ R+  + + T  GD+ILD F GSGT+     +L       R +I +
Sbjct: 371 ESLFDYPKPTQLIKRLMQISTDTNNGDVILDFFAGSGTTAHAVDELNAEDGGNRRWICV 429


>gi|167933084|ref|ZP_02520171.1| DNA methylase N-4/N-6 domain protein [candidate division TM7
           single-cell isolate TM7b]
          Length = 176

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 8/62 (12%)

Query: 201 EKLHPTQKPEALLSRI--LVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIE 252
           E L    KP  L+ R+  + + T  GD+ILD F GSGT+     +L       R +I ++
Sbjct: 115 ESLFDYPKPTQLIKRLMQISTDTNNGDVILDFFAGSGTTAHAVDELNAEDGGNRRWICVQ 174

Query: 253 MK 254
           + 
Sbjct: 175 LS 176


>gi|320190185|gb|EFW64835.1| DNA methylase [Escherichia coli O157:H7 str. EC1212]
          Length = 40

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 26/40 (65%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           +L +I+ +S++PGD++ D F G G++   A  L R  +G+
Sbjct: 1   MLRQIINASSRPGDLVADFFMGFGSTIKAAMALGRRALGV 40


>gi|225352313|ref|ZP_03743336.1| hypothetical protein BIFPSEUDO_03929 [Bifidobacterium
          pseudocatenulatum DSM 20438]
 gi|225157560|gb|EEG70899.1| hypothetical protein BIFPSEUDO_03929 [Bifidobacterium
          pseudocatenulatum DSM 20438]
          Length = 174

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 18 EWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPD 61
          +  + +I G+++  L+ L  +    VD I+ DPPYN     +L   D
Sbjct: 33 DCGNMVIHGDNLEALKALLPEYEGKVDCIYIDPPYNTGNVDELKDVD 79


>gi|88604279|ref|YP_504457.1| methyltransferase DNA modification enzyme [Methanospirillum
           hungatei JF-1]
 gi|88189741|gb|ABD42738.1| methyltransferase DNA modification enzyme [Methanospirillum
           hungatei JF-1]
          Length = 421

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 44/122 (36%), Gaps = 7/122 (5%)

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH---- 204
           HE L   S  P   G T          + + +  D      +     R +   KLH    
Sbjct: 9   HEYLRMFS-LPDQDGQTTLQLDQTTRCDTLCINDDEYCRYTNEFWTARQRQASKLHEISY 67

Query: 205 -PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
               KP+ L    +   T+PG+ + DPF G GT+   A  L R  I  ++      +   
Sbjct: 68  RACFKPQ-LPRFFISLLTEPGERVYDPFTGRGTTPLEAALLGRQIISNDINPLSRILTEP 126

Query: 264 RI 265
           R+
Sbjct: 127 RL 128


>gi|183220734|ref|YP_001838730.1| putative methyltransferase DNA modification enzyme [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189910835|ref|YP_001962390.1| DNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167775511|gb|ABZ93812.1| DNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167779156|gb|ABZ97454.1| Putative methyltransferase DNA modification enzyme [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 385

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 4/107 (3%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
             K  LA+          K+ I   NS + +  + ++SVDLI   PP+  +++ +     
Sbjct: 212 KMKRDLALPIPPFYHEFSKNNIYSLNSANSVPNVDSESVDLIVTSPPFLDKVDYEGDNWL 271

Query: 62  HSLVDAVTDSWDK----FSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
                 +  S D+    FS+   ++ F R+ L    RVLK    + +
Sbjct: 272 RHWFLDIQKSKDRKLSIFSNINDWNEFIRSTLKESARVLKKGAYMVM 318



 Score = 38.4 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 206 TQKPEALLSRILVSSTKPGD-IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
                 L S  +    K  + ++ DPF G GT+   A     + I  ++    I +A+ R
Sbjct: 38  ASFKPELPSFFMKEFLKKKNRVVYDPFGGRGTTAIQANIEGHAAIHNDIHPLSIFLASAR 97


>gi|158320351|ref|YP_001512858.1| site-specific DNA-methyltransferase (adenine-specific)
           [Alkaliphilus oremlandii OhILAs]
 gi|158140550|gb|ABW18862.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Alkaliphilus oremlandii OhILAs]
          Length = 656

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 75/227 (33%), Gaps = 31/227 (13%)

Query: 5   NSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD 61
                 EN+NS   +    I G+++  L+ L    +  V  I+ DPPYN   +G +Y   
Sbjct: 83  EHNEKEENKNSENGY----ISGDNLDALKHLLKSYSGMVKCIYLDPPYNTGSDGFVYNDK 138

Query: 62  ----------------HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI 105
                                 +  +    +S  A+  F    LL  + +LK +G +++ 
Sbjct: 139 FNFTVEQLMERLSLDEGQAQRIIDMTNRGSASHSAWLTFMYPRLLLAKDLLKEDGVIFIS 198

Query: 106 GSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
              +    +  +   +        +I+W+ S+             HE +I    +     
Sbjct: 199 IDENEHSNLRLLCDEVFGEENYSGEIIWKNSSKNDQA---FISIQHEYIISFVKNKDLNS 255

Query: 164 YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
             +N    K   E++    D        +    +K+       Q PE
Sbjct: 256 GEWN--EKKEGLEEIFKAFDEFKKKHGDNWEEIHKEALNWFK-QFPE 299



 Score = 40.0 bits (92), Expect = 0.56,   Method: Composition-based stats.
 Identities = 40/287 (13%), Positives = 86/287 (29%), Gaps = 33/287 (11%)

Query: 50  NLQLNGQLYRPDHSLVDAVTDSWDKFS-----SFEAYDAFTRAWLLA-----------CR 93
           N  LN   +      ++ +  ++D+F      ++E        W                
Sbjct: 250 NKDLNSGEWNEKKEGLEEIFKAFDEFKKKHGDNWEEIHKEALNWFKQFPESNPIYASKHY 309

Query: 94  RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
             +  NG         +    G    ++   +   +    ++          Q   E L+
Sbjct: 310 TWMDENG--VYFPDNISGPNFGQYRYDVIHPVTGKVCKEPASGWRFPEETMKQRIKEKLV 367

Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL 213
                        N        +   + S         S++L    G K     K   LL
Sbjct: 368 HFGKDETT---IPNNKTYLKNTQYQSLTSIKYKDGRVASKQLNELMGGKHFTNPKDVDLL 424

Query: 214 SRILVS-STKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYIDIATKRIA 266
           + I  +       II+D F GS T+     +L       R +I +++ ++  + +    A
Sbjct: 425 NTIFKAVGVDKDSIIVDFFSGSATTAHAVMQLNAEDGGNRKYIMVQLPEEVKEKSEAYKA 484

Query: 267 SVQPLGNIELTVLTGKRTEPRVAFNLLVERG-----LIQPGQILTNA 308
             + +  I +  +     + +    + ++ G     LI+P Q   + 
Sbjct: 485 GYRTINQIGIERIKRAAKKIKEETKVDIDYGFKHYELIEPNQNTLDK 531


>gi|161529283|ref|YP_001583109.1| RNA methylase [Nitrosopumilus maritimus SCM1]
 gi|160340584|gb|ABX13671.1| putative RNA methylase [Nitrosopumilus maritimus SCM1]
          Length = 315

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 205 PTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           P +    L   ++ +   K G+ + DPF G+GT+   A+ +    IG++  +  ++I  K
Sbjct: 159 PHELDWKLTRAMINLVGLKKGETVCDPFCGTGTTLLEAESMGIHGIGLDFDEKMVEITKK 218

Query: 264 RIAS 267
            +  
Sbjct: 219 NLKE 222


>gi|59479995|gb|AAW85782.1| predicted methyltransferase [Vibrio fischeri ES114]
          Length = 718

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 22/140 (15%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N N N     + + ++ + +  L++      DLIF DPP         +     +     
Sbjct: 594 NMNTNGQTGTQHQFLQADCLQWLQQ-ADGEFDLIFIDPP--------TFSNSKRMEQTFD 644

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
              D     E             +R+L+ NGT+    +  N       L+       N  
Sbjct: 645 VQRDHIMLLE-----------NLKRMLRENGTIVFSNNKRNFKMDEAGLEKAGLKAKN-- 691

Query: 130 VWRKSNPMPNFRGRRFQNAH 149
           + +++ P+   R +   N  
Sbjct: 692 ISKQTLPLDFARNKHIHNCW 711


>gi|326575075|gb|EGE25003.1| type III restriction-modification system restriction endonuclease
           [Moraxella catarrhalis CO72]
          Length = 656

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 57/170 (33%), Gaps = 25/170 (14%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLN------------------GQLY 58
           ++  I+ +++  L+ L    A  + +I+ DPPYN   +                  G   
Sbjct: 126 QNIFIESDNLEALKILQKSYAGKIKMIYIDPPYNTGNDFIYHDDFSQSKKEYEIATGDRN 185

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
                L     +S D       +       L     +L  +G +++    +   ++  + 
Sbjct: 186 INGELLKSFKKNSKDNGHYHSNWLNMMLPRLHLAHTLLSDDGVIFISIDDNEQAQLKLLC 245

Query: 119 QNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
             +         + R+++     + +     H+ L+  + +   K Y FN
Sbjct: 246 DEIFGGENFVATLPRQTSAQRPSQEKYISITHDYLLVYAKN---KNYDFN 292



 Score = 42.3 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 20/88 (22%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGI--- 251
           E      KP  L+  +         IILD F GS T+     +L       R FI +   
Sbjct: 427 ENYFDFSKPLDLIKILAKLLNGDNSIILDFFAGSATTAHAVMQLNTEDNGNRQFIMVQLP 486

Query: 252 ----EMKQDYI-------DIATKRIASV 268
               E  + Y        +I+ +RI   
Sbjct: 487 ELTDEKSEAYKAGFKTISEISKERIRRA 514


>gi|323703223|ref|ZP_08114875.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531779|gb|EGB21666.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfotomaculum nigrificans DSM 574]
          Length = 637

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 75/222 (33%), Gaps = 23/222 (10%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQL------NGQLY 58
            I E+  +    ++  I+G+++ VL+ L       + +I+ DPPYN         N ++ 
Sbjct: 82  YIPEDSKNPDTTENLYIEGDNLEVLKLLRNSYYNRIKMIYIDPPYNTGKDFIYRDNFKVS 141

Query: 59  RPDHSLVDAVTDSWDKF---------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
             ++++ +   D   +               + +     L   + +L  +G +++    +
Sbjct: 142 EEENAVSEGEIDLLGERLIVNQKSSGRYHSNWLSMMYPRLKVAKDLLTEDGVIFISIDDN 201

Query: 110 NIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS----PKAKGY 164
            +  +  +   +         +  +    P    + F   H+ ++  +            
Sbjct: 202 EVDNLKKICNEVFGEDNFVACIIWERAYSPVNLKKHFSENHDFVLCYAKQIDNLICNGLK 261

Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
             +    +  N D   R  W     S    ++ K  E + P+
Sbjct: 262 RTDESIDRYKNPDNDPRGPWKPADLSVGPAIQEKRYEIITPS 303



 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 35/103 (33%), Gaps = 20/103 (19%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGI- 251
           DG+      K   L+ R++    K   II+D F GS T+     +L       R FI + 
Sbjct: 380 DGKSYFDYPKSVDLIKRMIELYAKQDSIIMDFFSGSATTAHAVMQLNAEDGGNRKFIMVQ 439

Query: 252 ------EMKQDY-------IDIATKRIASVQPLGNIELTVLTG 281
                 E  + Y        +I  +RI         E     G
Sbjct: 440 LPEPCDEKSEAYKAGFKNICEIGRERIRRAGEKIKEENKDKEG 482


>gi|238764616|ref|ZP_04625562.1| Ribosomal protein L11 methyltransferase [Yersinia kristensenii ATCC
           33638]
 gi|238697206|gb|EEP89977.1| Ribosomal protein L11 methyltransferase [Yersinia kristensenii ATCC
           33638]
          Length = 299

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 10/131 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    AL  + 
Sbjct: 100 WEREWMDNFHPMRFGERLWICPSWRDVPDPTAVNVMLDPGLAFGTGTHPTT---ALCLQW 156

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L         ++D   GSG     A KL  +  IGI++    I  +     + Q  G  E
Sbjct: 157 LDGLNLQDKTVIDFGCGSGILAIAALKLGAKRAIGIDIDPQAIQASRD---NAQRNGVSE 213

Query: 276 LTVLTGKRTEP 286
              L   + +P
Sbjct: 214 RLELYLAKDQP 224


>gi|315633836|ref|ZP_07889125.1| N6-adenine-specific DNA methytransferase [Aggregatibacter segnis
           ATCC 33393]
 gi|315477086|gb|EFU67829.1| N6-adenine-specific DNA methytransferase [Aggregatibacter segnis
           ATCC 33393]
          Length = 715

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 20/109 (18%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N I   + K+I+ + +  LEK   +  DLIF DPP              S    + DSWD
Sbjct: 597 NDIEGKQHKLIQADCLQWLEKC-DRQFDLIFVDPP------------TFSNSKRMEDSWD 643

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                          +   +R+L+PNGT+    +          L+ L 
Sbjct: 644 VQRDHI-------KLMTNLKRILRPNGTIVFSNNKRGFKMDFAKLEELG 685


>gi|260581280|ref|ZP_05849097.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
 gi|2507512|sp|P44524|RLML_HAEIN RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|260092029|gb|EEW75975.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
          Length = 711

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 40/109 (36%), Gaps = 20/109 (18%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N I   + K+I+ + +  LEK   +  DLIFADPP              S    + +SWD
Sbjct: 593 NDIEGKQHKLIQADCLQWLEKC-DRQFDLIFADPP------------TFSNSKRMEESWD 639

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                          +   +RVL  NGT+    +          L+ L 
Sbjct: 640 VQRDH-------VKLMRNLKRVLSNNGTIVFSNNKRGFKMNLVALEELG 681


>gi|163783394|ref|ZP_02178386.1| Adenine-specific DNA methylase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881316|gb|EDP74828.1| Adenine-specific DNA methylase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 908

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 73/236 (30%), Gaps = 27/236 (11%)

Query: 55  GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA------CRRVLKPNGTLWVI--G 106
           G+L R ++ +        D+  +FE  +      L            +   G  W I   
Sbjct: 529 GKLQRNENQIARY--REQDEKGAFEWVNFRKHGGLKEEAPRMYYPIYINKTGRTWRIPRM 586

Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ------NAHETLIWASPSPK 160
            +    ++  +L+  N    +++V   ++     R  ++       + +E  +      +
Sbjct: 587 RWCEKNKVWEILEEPNP---DEVVVWPTDEHGQPRRWKWTPERLMASRNEVKVDYDRFGQ 643

Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
              Y  +             R ++                  +    K   L+   +  S
Sbjct: 644 LTLYIKSRMPEGITPSTWWDRPEYSATDYGTRGLKDLFGYHGIFSYPKAVNLVMDCIRVS 703

Query: 221 TKPGD--IILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYIDIATKRIASV 268
           +   D   +LD F GSGT+      L       R +I +EM   +  +   RI  V
Sbjct: 704 SGNSDNAFVLDFFAGSGTTAHAVINLNREDGGKRKYILVEMADYFNTVLLPRIKKV 759



 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 53/153 (34%), Gaps = 27/153 (17%)

Query: 15  SIFEWKDK-----IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           ++F+  D+     ++   +   L  +     + V  ++ DPPYN +     Y   +    
Sbjct: 387 TLFDHLDQELDGWLVHSENYQALNTMLPKFREKVRCVYIDPPYNSESTEIDYVNQYK--- 443

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
                        ++ +     L   +  L  +G + V    + + R+  +L     +  
Sbjct: 444 -----------HSSWMSLMDNRLALAKDFLCHDGIICVSIDDNEVIRLKEIL---GLYFS 489

Query: 127 NDIVWR--KSNPMPNFRGRRFQNAHETLIWASP 157
            ++     +SNP      +    +HE  ++ + 
Sbjct: 490 EEVATCVIRSNPAGRSTPKGVSVSHEYAVFFAK 522


>gi|68248729|ref|YP_247841.1| 23S rRNA m(2)G2445 methyltransferase [Haemophilus influenzae
           86-028NP]
 gi|81336856|sp|Q4QP66|RLML_HAEI8 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|68056928|gb|AAX87181.1| possible SAM-dependent methyltransferase [Haemophilus influenzae
           86-028NP]
          Length = 711

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 39/109 (35%), Gaps = 20/109 (18%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N I   + K+I+ + +  LEK   +  DLIF DPP              S    + DSWD
Sbjct: 593 NDIEGKQHKLIQADCLQWLEKC-DRQFDLIFVDPP------------TFSNSKRMEDSWD 639

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                          +   +RVL  NGT+    +          L+ L 
Sbjct: 640 VQRDH-------VKLMRNLKRVLSNNGTIVFSNNKRGFKMNLVALEELG 681


>gi|317132858|ref|YP_004092172.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Ethanoligenens harbinense YUAN-3]
 gi|315470837|gb|ADU27441.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Ethanoligenens harbinense YUAN-3]
          Length = 626

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 61/159 (38%), Gaps = 31/159 (19%)

Query: 200 GEKLHPTQKPEALLSRILV-SSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGI- 251
           G K+  + KP+ L+ ++L  ++T   DIILD F GS T+     +L       R FI + 
Sbjct: 377 GAKVFDSPKPKNLIEKMLRIATTGDEDIILDFFSGSATTAHAVMQLNAEDGGNRRFILVQ 436

Query: 252 ------EMKQDY-------IDIATKRIASV-QPLGNIELTVLTGKRTEPRVAFNLLVERG 297
                 E  + Y        ++  +RI    + L   +  +  G+  +  +     V   
Sbjct: 437 LPEVCDENSEAYKAGYKNICEVGKERIRRAGRKLTETDGQMQLGEDDKEPLDIGFRVY-- 494

Query: 298 LIQPGQILTNAQGNISATVCADGTL--ISGTELGSIHRV 334
                ++ ++       T   D  L  +     G IHRV
Sbjct: 495 -----KLDSSNLKTWDDTPIEDNQLNILYKRMNGMIHRV 528



 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 59/167 (35%), Gaps = 21/167 (12%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQLN-----------GQLYRPDHSLVDAVT 69
           I+G+++ VL+ L     + V +I+ DPPYN   +            +          +  
Sbjct: 93  IEGDNLEVLKLLQTSYYRKVKMIYIDPPYNTGNDFVYADDFADPMARYKEVTQQTTKSNP 152

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN---FWIL 126
           ++  +F +   +       L     +L+ +G +++         +  +   +     +I 
Sbjct: 153 ETMGRFHTN--WLNMMYPRLRLAANLLRDDGVIFISIDDGEQTNLRKLCDEVFGEENFIA 210

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
             I  +  +P  + +G  F  +H+ ++          +   +    A
Sbjct: 211 QIIWQKVYSPRMDVQG--FSVSHDYILCYVKQSFDSIHKETFAQNSA 255


>gi|251792044|ref|YP_003006764.1| 23S rRNA m(2)G2445 methyltransferase [Aggregatibacter aphrophilus
           NJ8700]
 gi|247533431|gb|ACS96677.1| hypothetical protein NT05HA_0239 [Aggregatibacter aphrophilus
           NJ8700]
          Length = 718

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 20/109 (18%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N I   + K+I+ + +  LEK   +  DLIF DPP              S    + DSWD
Sbjct: 597 NDIEGKQHKLIQADCLQWLEKC-DRQFDLIFVDPP------------TFSNSKRMEDSWD 643

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                          +   +R+L+PNGT+    +          L+ L 
Sbjct: 644 VQRDHI-------KLMTNLKRILRPNGTIVFSNNKRGFKMDFAKLEELG 685


>gi|159044649|ref|YP_001533443.1| hypothetical protein Dshi_2105 [Dinoroseobacter shibae DFL 12]
 gi|157912409|gb|ABV93842.1| hypothetical protein Dshi_2105 [Dinoroseobacter shibae DFL 12]
          Length = 226

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 10/85 (11%)

Query: 21  DKIIKGNSISVLEKL---PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
             +I G +   LE L       +D+I+ DPPYN          D    +      D +  
Sbjct: 140 HTVINGENFHALEALTYTHRGKIDVIYIDPPYNSGA------SDWKYNNKYVGDEDVYRH 193

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTL 102
            + + AF    L   R++LKP+G L
Sbjct: 194 SK-WLAFMERRLQVARQLLKPSGAL 217


>gi|148270888|ref|YP_001245348.1| adenine-specific DNA methylase [Thermotoga petrophila RKU-1]
 gi|147736432|gb|ABQ47772.1| Adenine-specific DNA methylase containing a Zn-ribbon-like protein
           [Thermotoga petrophila RKU-1]
          Length = 916

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 58/168 (34%), Gaps = 25/168 (14%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY--NLQLNGQLYRPDHSLVDAVTDSWDKFSS--- 77
           I  G+S S L+ +P KSVD +  DPPY  N+  +         L  A+ D ++ F S   
Sbjct: 532 ITCGDS-SYLD-IPDKSVDAVITDPPYYGNVMYSELSEFYYAWLRLALKDKYEYFRSEHV 589

Query: 78  ---------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ--- 119
                           + +     A      R LK +G +     +      G +LQ   
Sbjct: 590 PNATEIIVNKVQGKDEKDFIEGLTAVFKEANRKLKDDGLMVFTFHHQEEKAWGAVLQSVL 649

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
           N  F+I      +  + +     ++    ++ ++      +     + 
Sbjct: 650 NAGFYISAIYPVQSESDVSPHIFQKANVRYDMVVVCRKRKEKPEKRYW 697



 Score = 38.0 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           ++LDP  G GT+   A +     +  ++      +  K    V+P+ +IE    T K+ E
Sbjct: 93  VVLDPMMGGGTTVVEALRTGCKVVAQDLNPVAWFLVKK---IVEPV-DIEKLEETFKKLE 148

Query: 286 PRVA 289
            +VA
Sbjct: 149 SQVA 152


>gi|158520955|ref|YP_001528825.1| putative RNA methylase [Desulfococcus oleovorans Hxd3]
 gi|158509781|gb|ABW66748.1| putative RNA methylase [Desulfococcus oleovorans Hxd3]
          Length = 461

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 7/92 (7%)

Query: 207 QKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           +    ++  ++ +   KPGD +LDP  GSGT    A  +  + IGI+       +A  +I
Sbjct: 116 KFHPQMIKGLINIMGLKPGDTVLDPMMGSGTVLVEASLMGINSIGIDASPFCRFMAQTKI 175

Query: 266 ASVQ-PLGNIELTVLTGKRTEPRVAFNLLVER 296
            ++  PL   + T+   K       FN   ER
Sbjct: 176 DALTVPLSRAQKTLNNYKEV-----FNYFSER 202



 Score = 42.7 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 41/108 (37%), Gaps = 18/108 (16%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS------ 77
           ++G++  +   L  K+VD I   PPY+  ++      D   ++ +    D   +      
Sbjct: 308 MEGDARDL--PLDNKTVDGIIFSPPYSFAIDY--LGNDAFHLNYLGVEMDNLRNSMIGLR 363

Query: 78  -------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
                  FE Y       L  C RVL+P   L  I    N  ++G  L
Sbjct: 364 GKKLSEKFELYREDMEQVLSECSRVLRP-ARLCTIIVGTNNNQLGKAL 410


>gi|326566583|gb|EGE16729.1| type III restriction-modification system restriction endonuclease
           [Moraxella catarrhalis 12P80B1]
          Length = 630

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 57/170 (33%), Gaps = 25/170 (14%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLN------------------GQLY 58
           ++  I+ +++  L+ L    A  + +I+ DPPYN   +                  G   
Sbjct: 100 QNIFIESDNLEALKILQKSYAGKIKMIYIDPPYNTGNDFIYHDDFSQSKKEYEIATGDRN 159

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
                L     +S D       +       L     +L  +G +++    +   ++  + 
Sbjct: 160 INGELLKSFKKNSKDNGHYHSNWLNMMLPRLHLAHTLLSDDGVIFISIDDNEQAQLKLLC 219

Query: 119 QNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
             +         + R+++     + +     H+ L+  + +   K Y FN
Sbjct: 220 DEIFGGENFVATLPRQTSAQRPSQEKYISITHDYLLVYAKN---KNYDFN 266



 Score = 42.3 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 20/88 (22%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGI--- 251
           E      KP  L+  +         IILD F GS T+     +L       R FI +   
Sbjct: 401 ENYFDFSKPLDLIKILAKLLNGDNSIILDFFAGSATTAHAVMQLNTEDNGNRQFIMVQLP 460

Query: 252 ----EMKQDYI-------DIATKRIASV 268
               E  + Y        +I+ +RI   
Sbjct: 461 ELTDEKSEAYKAGFKTISEISKERIRRA 488


>gi|169836906|ref|ZP_02870094.1| adenine specific DNA methylase Mod [candidate division TM7
           single-cell isolate TM7a]
          Length = 358

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 60/199 (30%), Gaps = 24/199 (12%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN-------GQLYRPDHSLVDAVTD 70
           +  I+G++++ L+ L       V +I+ DPPYN   +        Q  R   +      D
Sbjct: 85  NMFIEGDNLAALKILHKAYYGKVKMIYIDPPYNTGNDFIYNDDSKQTRRSYETEAGITDD 144

Query: 71  SWDKFSS-----------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
             +                  +       L   R +L+ +G ++V    + +  +  M+ 
Sbjct: 145 EGNVVRDDGLRTNTGGHKHSNWLNMMYPRLFLARNLLRQDGVIFVSIDDNEVHNLRLMMN 204

Query: 120 NL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETL--IWASPSPKAKGYTFNYDALKAANE 176
            +         V  +         + F   H+ +  I        +      +    +N 
Sbjct: 205 EIFGEENFVAQVIWEKVHTRKNSAQYFSYNHDYVVTIARKKDEWKRKLIPRENNSAYSNP 264

Query: 177 DVQMRSDWLIPICSGSERL 195
           D   +  W +     +   
Sbjct: 265 DNDPKGVWKLDPIYANNPY 283


>gi|157826175|ref|YP_001493895.1| DNA modification methylase-like protein [Rickettsia akari str.
           Hartford]
 gi|157800133|gb|ABV75387.1| DNA modification methylase-like protein [Rickettsia akari str.
           Hartford]
          Length = 44

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
              HP   P AL+ RI+ S+     I+LDPF GS T+   A+KL 
Sbjct: 2   NNDHPRPFPNALIKRIISSTNAK--IVLDPFIGSVTTAIAAQKLN 44


>gi|325168969|ref|YP_004285716.1| hypothetical protein ACMV_P2_00380 [Acidiphilium multivorum AIU301]
 gi|325052782|dbj|BAJ83118.1| hypothetical protein ACMV_P2_00380 [Acidiphilium multivorum AIU301]
          Length = 722

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++LDPF GSGT+   A KL    IG ++  
Sbjct: 89  VVLDPFMGSGTTLGEAIKLGAKAIGCDINP 118



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 36/118 (30%), Gaps = 20/118 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYN---------------LQLNGQLYRPDHSLVDA 67
           I+ G+S  +   +PA SVD +  DPPY                L    +   P  +  D+
Sbjct: 481 ILNGDSSEL--PMPAGSVDAVVTDPPYFDFVHYSELSDFFFAWLSPVLRGRYPWMAREDS 538

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL---WVIGSYHNIFRIGTMLQNLN 122
                 +      +     A      RVLK +G L   +          I   +    
Sbjct: 539 SDQGEVQHKDPRVFARQLAAVFTEACRVLKDDGVLAFSFHHSRAEGWAAIYEAISEAG 596


>gi|225075555|ref|ZP_03718754.1| hypothetical protein NEIFLAOT_00568 [Neisseria flavescens
           NRL30031/H210]
 gi|224953100|gb|EEG34309.1| hypothetical protein NEIFLAOT_00568 [Neisseria flavescens
           NRL30031/H210]
          Length = 452

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 6/81 (7%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR---- 245
           +G++ +      KL    KP +L+  +L        +ILD F GSGT+     +L     
Sbjct: 204 NGTKEITELFEGKLFDFPKPSSLIKYLLQILHVSDGLILDFFSGSGTTAHAVMQLNAEDG 263

Query: 246 --RSFIGIEMKQDYIDIATKR 264
             R FI  ++ ++  + +  R
Sbjct: 264 GSRRFICAQLPEETDEKSEAR 284


>gi|37527934|ref|NP_931279.1| ribosomal protein L11 methyltransferase [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|38605126|sp|P60092|PRMA_PHOLL RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|36787370|emb|CAE16459.1| ribosomal protein L11 methyltransferase [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 296

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 46/131 (35%), Gaps = 10/131 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++  N      S   +P       + +     G   HPT    +L  + 
Sbjct: 95  WEREWMDNFHPMRFGNRLWICPSWRDVPDPDAVNVMLDPGLAFGTGTHPTT---SLCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG     A KL     IGI++    I  +     + +  G +E
Sbjct: 152 LDSLNLEGKTVIDFGCGSGILAIAALKLGATHAIGIDIDPQAIQASRD---NAERNGVLE 208

Query: 276 LTVLTGKRTEP 286
              L   +  P
Sbjct: 209 HLTLYLAKNTP 219


>gi|149914056|ref|ZP_01902588.1| putative modification methylase [Roseobacter sp. AzwK-3b]
 gi|149812340|gb|EDM72171.1| putative modification methylase [Roseobacter sp. AzwK-3b]
          Length = 100

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 23/42 (54%)

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           LDP  GSG +  VA++  R +I I+  +  + +A  RI   +
Sbjct: 2   LDPTCGSGATAYVAEQWGRRWITIDTSRVALALARARIMGAK 43


>gi|258593568|emb|CBE69909.1| Adenine specific DNA methylase Mod [NC10 bacterium 'Dutch
           sediment']
          Length = 588

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 10/78 (12%)

Query: 200 GEKLHPTQKPEALLSRILVSST--KPGDIILDPFFGSGTSGAVAKKLR------RSFIGI 251
           G+K+    K   +L+R++   T      ++LD F G+GT+G     L       R FI +
Sbjct: 367 GKKVFENPKDHEVLARLIRYVTQGNQRALVLDSFAGTGTTGHAVLALNESDKGSRRFILV 426

Query: 252 EMKQDYID-IATKRIASV 268
           E  +DY D I  +R+  V
Sbjct: 427 EC-EDYADSITAERVRRV 443



 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 54/188 (28%), Gaps = 18/188 (9%)

Query: 37  AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW-------DKFSSFEAYDAFTRAWL 89
           A  +D I+ DPPYN       Y  + S+   +   W       +  +  + +       L
Sbjct: 60  AGKIDCIYIDPPYNTGNEKWAY--NDSVNSPMMQDWLGKVVDREDLTRHDKWLCMMMPRL 117

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAH 149
              + +LK  G + V    +       ++  +     N I             + F   H
Sbjct: 118 KILKDLLKSEGVIMVSIDDNEAHHFRCLMDEVFGE-ENFIAQLVCEKGRKNDAKLFSVGH 176

Query: 150 ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE--------RLRNKDGE 201
           E ++  + S                           +    GS+        R   K   
Sbjct: 177 EYILIYARSMDTLKQRKTIWREDKPGAKEIQDEYLRLRALHGSDSNAIQEGLRDFYKQLP 236

Query: 202 KLHPTQKP 209
           K HP++K 
Sbjct: 237 KNHPSKKH 244


>gi|197116728|ref|YP_002137155.1| hypothetical protein Gbem_0328 [Geobacter bemidjiensis Bem]
 gi|197086088|gb|ACH37359.1| hypothetical protein Gbem_0328 [Geobacter bemidjiensis Bem]
          Length = 383

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 52/157 (33%), Gaps = 18/157 (11%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ------- 56
           KN  A+ +          K+I+ ++ ++  +L  +SVDL+   PPY   ++         
Sbjct: 216 KNLRAVMDTNRGPISTTAKVIQQDARNM--ELEDESVDLVVTSPPYAGVIDYTHANRLLY 273

Query: 57  ---LYRPDHSLVDAVTDSW--DKFSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHN 110
               +       D +   +  ++ ++ E Y +  R       RVLK       V+G    
Sbjct: 274 LWMGWPMGEERADEIGARYRRNRKNAVEEYLSDMRLCRDQIHRVLKKGSYCAIVVGESKK 333

Query: 111 IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
                ++L          +             RR  +
Sbjct: 334 FPNTASLLIE---DFSQSMPIVWGPKSRYLSRRRVSD 367



 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 2/86 (2%)

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           R +W  P  S    L +       P      + + ++   ++ G+++ DPF GSGT+   
Sbjct: 11  RINWDFP--SAGTELGSVHSIHWFPGNYIPQIPAALIQVLSRTGEVVFDPFGGSGTTAIE 68

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIA 266
           A KL R  +  +     + I   +++
Sbjct: 69  ALKLGRFAVVSDRISACVQITEAKLS 94


>gi|7465428|pir||A64691 type III restriction enzyme M protein - Helicobacter pylori
           (strain 26695)
          Length = 474

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 17/103 (16%)

Query: 22  KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
            +IK  +   L  L     +++D I+ DPPYN Q N  +Y  +                 
Sbjct: 377 TLIKSENYQALNSLKNRYKEAIDCIYIDPPYNTQNNEFIYADNFKRSS------------ 424

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
             + +     L   R++L   G ++V    +    +  ++  +
Sbjct: 425 --WLSMMENRLELARKLLNDKGAMFVSIDDNEQAYLKVLMDEV 465


>gi|296112587|ref|YP_003626525.1| type III restriction-modification system restriction endonuclease
           [Moraxella catarrhalis RH4]
 gi|295920281|gb|ADG60632.1| type III restriction-modification system restriction endonuclease
           [Moraxella catarrhalis RH4]
          Length = 658

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 57/170 (33%), Gaps = 25/170 (14%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLN------------------GQLY 58
           ++  I+ +++  L+ L    A  + +I+ DPPYN   +                  G   
Sbjct: 128 QNIFIESDNLEALKILQKSYAGKIKMIYIDPPYNTGNDFIYHDDFSQSKKEYEIATGDRN 187

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
                L     +S D       +       L     +L  +G +++    +   ++  + 
Sbjct: 188 INGELLKSFKKNSKDNGHYHSNWLNMMLPRLHLAHTLLSDDGVIFISIDDNEQAQLKLLC 247

Query: 119 QNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
             +         + R+++     + +     H+ L+  + +   K Y FN
Sbjct: 248 DEVFGGENFVATLPRQTSAQRPSQEKYISITHDYLLVYAKN---KNYDFN 294



 Score = 42.3 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 20/88 (22%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGI--- 251
           E      KP  L+  +         IILD F GS T+     +L       R FI +   
Sbjct: 429 ENYFDFSKPLDLIKILAKLLNGDNSIILDFFAGSATTAHAVMQLNAEDNGNRQFIMVQLP 488

Query: 252 ----EMKQDYI-------DIATKRIASV 268
               E  + Y        +I+ +RI   
Sbjct: 489 ELTDEKSEAYKAGFKTISEISKERIRRA 516


>gi|313898499|ref|ZP_07832036.1| restriction endonuclease [Clostridium sp. HGF2]
 gi|312956881|gb|EFR38512.1| restriction endonuclease [Clostridium sp. HGF2]
          Length = 783

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 3/100 (3%)

Query: 190 SGSERLRNKDGEKLHP--TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           +   R      E++ P   +K  A+   ++ + T    +I+DPF GSGT    A    R 
Sbjct: 23  TIMNRQARDQSEQIFPFIGRKSRAIARTLIENLTDENAVIVDPFGGSGTFAYAALDAGRH 82

Query: 248 FIGIEMKQDYIDIATKRIASV-QPLGNIELTVLTGKRTEP 286
            I  E +    +++T     V  P    +      +R EP
Sbjct: 83  VIFNEWEPYAYEMSTAPFRGVPSPDEYADALCFIAQRVEP 122



 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 36/113 (31%), Gaps = 19/113 (16%)

Query: 31  VLEKLPAKSVDLIFADPPY-----------------NLQLNGQLYRPDHSLVDAVTDSWD 73
            L  +P  +V+L+  DPPY                 N  L+G   R  + +V +   S  
Sbjct: 326 FLRTIPPNTVNLLLTDPPYGDNAQYFEHAQRVHPLMNYSLSGDNDRLHNEVVISNAPSRT 385

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGT--LWVIGSYHNIFRIGTMLQNLNFW 124
                E +        +   R++  +G   L+      +       L++    
Sbjct: 386 DKHGKEQFLVDIERLFIEANRIVDDHGFMVLYFRPQQRDWVSDLNKLKDFGRR 438


>gi|301155963|emb|CBW15433.1| predicted methyltransferase [Haemophilus parainfluenzae T3T1]
          Length = 711

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 40/109 (36%), Gaps = 20/109 (18%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N I   + K+I+ + +  LEK   +  DLIF DPP              S    + DSWD
Sbjct: 592 NDIEGKQHKLIQADCLQWLEKC-DRQFDLIFVDPP------------TFSNSKRMEDSWD 638

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                          +   +R+L+PNGT+    +          L  L 
Sbjct: 639 VQRDHI-------KLMRNLKRILRPNGTVVFSNNKRGFKMDFEALDELG 680


>gi|227875280|ref|ZP_03993422.1| possible DNA methylase [Mobiluncus mulieris ATCC 35243]
 gi|227844185|gb|EEJ54352.1| possible DNA methylase [Mobiluncus mulieris ATCC 35243]
          Length = 381

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 70/191 (36%), Gaps = 27/191 (14%)

Query: 26  GNSISVLEKLPA------KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           G+ +  L ++P         V LI+ DPP+N                    +++      
Sbjct: 83  GDVLEALTRVPELAEKYVGKVKLIYIDPPFNTA--------------QTFANYEDNLEHS 128

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPM 137
            +    R  L+  +++L+ +G++WV      + R+  +L  +      +++++W+K+   
Sbjct: 129 VWLTMMRDRLVNLKKLLREDGSIWVHLDDVEVHRMRLLLDEIFGSENFISEVIWQKAYGG 188

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNY---DALKAANEDVQMRSDWLIPICSGSER 194
            N       +    L+++      +  +         + +N D  +R  W      G   
Sbjct: 189 NNSSVEFVSSTDTVLVYSKKRNNLQLNSLPRTPKMDSRYSNPDNDIRGRWKGDNAFG--E 246

Query: 195 LRNKDGEKLHP 205
              K G+  HP
Sbjct: 247 GAGKPGKSQHP 257


>gi|312197427|ref|YP_004017488.1| DNA methylase N-4/N-6 domain protein [Frankia sp. EuI1c]
 gi|311228763|gb|ADP81618.1| DNA methylase N-4/N-6 domain protein [Frankia sp. EuI1c]
          Length = 376

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           + T  P     + L +       +LDPF G GT+   A+      +GI++      IA  
Sbjct: 25  YYTMFPLDFPLQHLAARPGIS-RVLDPFCGRGTTLYAARLAGVPAVGIDISPVAAAIAQA 83

Query: 264 RIASVQP 270
           ++  + P
Sbjct: 84  KLIEITP 90



 Score = 42.3 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY 49
           K+  G+    L  L  +  DL+   PPY
Sbjct: 218 KVYLGDCAETLSGLR-QRFDLVVTSPPY 244


>gi|326566922|gb|EGE17061.1| type III restriction-modification system restriction endonuclease
           [Moraxella catarrhalis 103P14B1]
          Length = 382

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 57/170 (33%), Gaps = 25/170 (14%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLN------------------GQLY 58
           ++  I+ +++  L+ L    A  + +I+ DPPYN   +                  G   
Sbjct: 109 QNIFIESDNLEALKILQKSYAGKIKMIYIDPPYNTGNDFIYHDDFSQSKKEYEIATGDRN 168

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
                L     +S D       +       L     +L  +G +++    +   ++  + 
Sbjct: 169 INGELLKSFKKNSKDNGHYHSNWLNMMLPRLHLAHTLLSDDGVIFISIDDNEQAQLKLLC 228

Query: 119 QNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
             +         + R+++     + +     H+ L+  + +   K Y FN
Sbjct: 229 DEIFGGENFVATLPRQTSAQRPSQEKYISITHDYLLVYAKN---KNYDFN 275


>gi|1074267|pir||B64143 hypothetical protein HI0115 - Haemophilus influenzae (strain Rd
           KW20)
          Length = 545

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 40/109 (36%), Gaps = 20/109 (18%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N I   + K+I+ + +  LEK   +  DLIFADPP              S    + +SWD
Sbjct: 427 NDIEGKQHKLIQADCLQWLEKC-DRQFDLIFADPP------------TFSNSKRMEESWD 473

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                          +   +RVL  NGT+    +          L+ L 
Sbjct: 474 VQRDH-------VKLMRNLKRVLSNNGTIVFSNNKRGFKMNLVALEELG 515


>gi|86147887|ref|ZP_01066192.1| ribosomal protein L11 methyltransferase [Vibrio sp. MED222]
 gi|85834314|gb|EAQ52467.1| ribosomal protein L11 methyltransferase [Vibrio sp. MED222]
          Length = 295

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 55/168 (32%), Gaps = 12/168 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  +K         S   IP       + +     G   HPT    AL    
Sbjct: 96  WEREWMDNFHPMKFGERLWICPSWRDIPEPDAVNVMLDPGLAFGTGTHPTT---ALCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG     A KL     IGI++    +  +     + Q  G  E
Sbjct: 153 LEGLDLTGKTVIDFGCGSGILAIAAIKLGAAKVIGIDIDPQALLASKD---NAQRNGVAE 209

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
              +   + +P      +V   ++     L +  G I   V  +G L 
Sbjct: 210 QLEVFLPQDQPEGLLADVVVANIL--AGPLRDLSGIIKGLVKPNGVLA 255


>gi|84393067|ref|ZP_00991833.1| ribosomal protein L11 methyltransferase [Vibrio splendidus 12B01]
 gi|84376319|gb|EAP93201.1| ribosomal protein L11 methyltransferase [Vibrio splendidus 12B01]
          Length = 295

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 55/168 (32%), Gaps = 12/168 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  +K         S   IP       + +     G   HPT    AL    
Sbjct: 96  WEREWMDNFHPMKFGERLWICPSWRDIPEPDAVNVMLDPGLAFGTGTHPTT---ALCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG     A KL     IGI++    +  +     + Q  G  E
Sbjct: 153 LEGLDLTGKTVIDFGCGSGILAIAAIKLGAAKVIGIDIDPQALLASKD---NAQRNGVAE 209

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
              +   + +P      +V   ++     L +  G I   V  +G L 
Sbjct: 210 QLEVFLPQDQPEGLLADVVVANIL--AGPLRDLSGIIKGLVKPNGVLA 255


>gi|227485749|ref|ZP_03916065.1| DNA methylase [Anaerococcus lactolyticus ATCC 51172]
 gi|227236304|gb|EEI86319.1| DNA methylase [Anaerococcus lactolyticus ATCC 51172]
          Length = 248

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 8/79 (10%)

Query: 190 SGSERLRNKDGEKLHPTQKP----EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +       +     H  +        +   I++  ++ GD++LD F G GT+   AK L 
Sbjct: 17  TTHWSFPQRGNWATHDAKWRGNWSPYIPRNIILRYSEEGDLVLDQFAGGGTTLVEAKLLN 76

Query: 246 RSFIGIEMKQDYIDIATKR 264
           R+ IG+++     D+A  R
Sbjct: 77  RNIIGLDVN----DVALNR 91



 Score = 43.8 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 54/153 (35%), Gaps = 26/153 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K K++KG++ + L+ L  +S+DL+   PPY   +       +   +  + D         
Sbjct: 107 KVKLLKGDARN-LDFLTDESIDLVCTHPPYADIIKYSDGIENDLSLLKIND--------- 156

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSY--------HNIFRIGTMLQNLNFWILNDIVW 131
            +            RVLK +    ++           H  F +  + ++  F +   I+ 
Sbjct: 157 -FLKEMNKVAAEAYRVLKKDKFCAILMGDTRKNKHMIHLGFDVLKVFEDEGFKLKELIIK 215

Query: 132 RKSNPMPN-FRGRRFQN------AHETLIWASP 157
            + N     F  +R  +      AHE L     
Sbjct: 216 EQHNTRATGFWKKRSVDYNFLLIAHEYLFILKK 248


>gi|257059386|ref|YP_003137274.1| methyltransferase [Cyanothece sp. PCC 8802]
 gi|256589552|gb|ACV00439.1| methyltransferase [Cyanothece sp. PCC 8802]
          Length = 179

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/32 (56%), Positives = 24/32 (75%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
           KII+G+ I+VL+ L  +S D I+ DPPYN QL
Sbjct: 91  KIIRGDVINVLKTLAGQSFDRIYFDPPYNSQL 122


>gi|268322412|emb|CAX37147.1| Pseudogen of Type III restriction modification system : methylase
           (part 2) [Mycoplasma hominis ATCC 23114]
          Length = 399

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 2/127 (1%)

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
               +  +   ++  N +     ++  N  E + +       K        +K +     
Sbjct: 155 ESGCYTWSYDAYKAGNKLGFIECKKNSND-EWVAFRKQYQFVKFDPRTKKIVKISAGQQY 213

Query: 180 MRSDWLIPICSGSERLRNKDGEK-LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
                 I    G E +++   +K +    KP  L+  ++     P   ILD F GSGT+G
Sbjct: 214 ENIIDNIYSQGGGENMKSIFSDKNIFDFPKPIELIKYLINIHPNPDARILDFFAGSGTTG 273

Query: 239 AVAKKLR 245
                L 
Sbjct: 274 HAVLDLN 280


>gi|229141871|ref|ZP_04270398.1| Adenine specific DNA methylase Mod-like protein [Bacillus cereus
           BDRD-ST26]
 gi|228641627|gb|EEK97931.1| Adenine specific DNA methylase Mod-like protein [Bacillus cereus
           BDRD-ST26]
          Length = 204

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 12/106 (11%)

Query: 20  KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDH-SLVDAVTDSWDKF 75
            + +++G++++ LE L       VD+++ DPPYN       Y  D+    DA   S    
Sbjct: 76  MNFLLEGDNLASLELLSKTHKGLVDVVYIDPPYNTGNTDFTYDDDYVEKEDAYKHS---- 131

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
                + +F +  L     V+  +G L++         +  +   +
Sbjct: 132 ----KWLSFMKRRLELAHEVMSNDGILFMSIDDKEQAALKILTDEI 173


>gi|326563913|gb|EGE14164.1| type III restriction-modification system restriction endonuclease
           [Moraxella catarrhalis 46P47B1]
          Length = 634

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 57/170 (33%), Gaps = 25/170 (14%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLN------------------GQLY 58
           ++  I+ +++  L+ L    A  + +I+ DPPYN   +                  G   
Sbjct: 104 QNIFIESDNLEALKILQKSYAGKIKMIYIDPPYNTGNDFIYHDDFSQSKKEYEIATGDRN 163

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
                L     +S D       +       L     +L  +G +++    +   ++  + 
Sbjct: 164 INGELLKSFKKNSKDNGHYHSNWLNMMLPRLHLAHTLLSDDGVIFISIDDNEQAQLKLLC 223

Query: 119 QNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
             +         + R+++     + +     H+ L+  + +   K Y FN
Sbjct: 224 DEVFGGENFVATLPRQTSAQRPSQEKYISITHDYLLVYAKN---KNYDFN 270



 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 20/88 (22%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGI--- 251
           E      KP  L+  +         IILD F GS T+     +L       R FI +   
Sbjct: 405 ENYFDFSKPLDLIKILAKLLNGDNSIILDFFAGSATTAHAVMQLNAEDNGNRQFIMVQLP 464

Query: 252 ----EMKQDYI-------DIATKRIASV 268
               E  + Y        +I+ +RI   
Sbjct: 465 ELTDEKSEAYKAGFKTISEISKERIRRA 492


>gi|160899639|ref|YP_001565221.1| DNA methylase N-4/N-6 domain-containing protein [Delftia
           acidovorans SPH-1]
 gi|160365223|gb|ABX36836.1| DNA methylase N-4/N-6 domain protein [Delftia acidovorans SPH-1]
          Length = 661

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 7/59 (11%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV--AKKL----RRSFIGIEMKQDYID 259
            KP +L+   +   T P DIILD F G+GT+G    A+       R FI +++   Y+D
Sbjct: 414 PKPRSLIRDFVTIGTSPQDIILDFFAGTGTTGHAVMAQNFLDEGNRRFILVQL-PQYLD 471



 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 45/121 (37%), Gaps = 21/121 (17%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRP---------------- 60
           ++ +I+G+++ VL+ L    A  V LI+ DPPYN   +                      
Sbjct: 98  QNLMIEGDNLEVLKLLQKSYAGKVKLIYIDPPYNTGKDFVYPDNFQDNIKNYLELTGQVE 157

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
               + + T++  +F +   +       L   + +L  +G + +         +  ++  
Sbjct: 158 GGQRISSNTEASGRFHT--DWLNMMYPRLKLAKNLLLDSGLIIISIDSSEATNLRLIMDE 215

Query: 121 L 121
           +
Sbjct: 216 V 216


>gi|15602953|ref|NP_246025.1| ribosomal protein L11 methyltransferase [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|38605464|sp|Q9CLW2|PRMA_PASMU RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|12721427|gb|AAK03172.1| PrmA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 293

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 60/182 (32%), Gaps = 14/182 (7%)

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEK 202
           +++   +         + +  N+  ++         S   +P  + +  + +     G  
Sbjct: 81  ESSVYKIEQIEDKDWEREWMDNFHPMRFGKRLWICPSWREVPDENATNVMLDPGLAFGTG 140

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYIDIA 261
            HPT    AL    L S       ++D   GSG     A KL     +GI++    I  +
Sbjct: 141 THPTT---ALCLEWLDSLDLQDKTVIDFGCGSGILAIAALKLGAKSAVGIDIDPQAILAS 197

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ-PGQILTNAQGNISATVCADG 320
                + +  G  +   L     +P      +V   ++  P + L      +   V  +G
Sbjct: 198 RN---NAEQNGVADRLQLFLSEDKPADLKADVVVANILAGPLKELYPVIRQL---VKPNG 251

Query: 321 TL 322
            L
Sbjct: 252 VL 253


>gi|195542254|gb|ACF98330.1| hypothetical protein [Escherichia coli]
          Length = 707

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++LDPF GSGT+   A KL    IG ++  
Sbjct: 89  VVLDPFMGSGTTLGEAVKLGAKAIGCDINP 118



 Score = 40.7 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 35/120 (29%), Gaps = 24/120 (20%)

Query: 23  IIKGNSISVLEKLP--AKSVDLIFADPPYN---------------LQLNGQLYRPDHSLV 65
           I+ G+S     KLP  A +VD +  DPPY                L    +      +  
Sbjct: 481 IMNGDS----SKLPVPAGTVDAVVTDPPYFDFVHYSELSDFFFAWLSPALRNRYSWMARE 536

Query: 66  DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL---WVIGSYHNIFRIGTMLQNLN 122
           D+      +      +     +      RVLK +G L   +          I   +    
Sbjct: 537 DSSDPGEVQHKDPLVFARQLASVFTEACRVLKDDGVLAFSFHHSRAEGWAAIYEAVSKAG 596


>gi|255038969|ref|YP_003089590.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Dyadobacter fermentans DSM 18053]
 gi|254951725|gb|ACT96425.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Dyadobacter fermentans DSM 18053]
          Length = 641

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 49/129 (37%), Gaps = 18/129 (13%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN---GQLYRPDHSL 64
           E+  +  E ++  I+G+++ VL+ L       + +I+ DPPYN   +      +  D   
Sbjct: 90  EHSVNFDETENLFIEGDNLDVLKLLQESYFGKIKMIYIDPPYNTGKDFVYKDNFSRDTQA 149

Query: 65  VDAVTDSWDKFSS------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
                   D+++                + +     L   R +L  NG +++    + + 
Sbjct: 150 ELFEGGQKDEYNHRLIVNPETSGRYHSDWLSMMYPRLKLARNLLGDNGVIFISIDENEVK 209

Query: 113 RIGTMLQNL 121
            + ++   +
Sbjct: 210 NLLSLCDEI 218



 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 61/177 (34%), Gaps = 26/177 (14%)

Query: 132 RKSNPMPNFRGRRFQNAHETLIWA--SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
           R    +  +   + +     + +     + + + YT  +++L        +  +      
Sbjct: 321 RNRTTIWRWSKDKIETEKSEIEFHRDKKTGEWRVYTRTWESLDGVTPRSLLVENIHGRNR 380

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILV-SSTKPGDIILDPFFGSGTSGAV------AK 242
            G + L    G K+    KP  LL  ++  ++  P DI+LD F GS +          ++
Sbjct: 381 DGGQELAKLIGPKIFSNPKPLRLLKHLIRVANLGPDDIVLDFFAGSASMAHAILDSNSSE 440

Query: 243 KLRRSFIGIEMKQ--------------DYIDIATKRIASVQPLGNIELTVLTGKRTE 285
              R FI +++ +              D   I  +RI  V   G         KRT 
Sbjct: 441 NSHRKFIMVQLPEPTPNESGAYINGYTDICQIGRERIRQV---GKALGEQYDQKRTA 494


>gi|188585004|ref|YP_001916549.1| DNA methylase N-4/N-6 domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349691|gb|ACB83961.1| DNA methylase N-4/N-6 domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 637

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 59/169 (34%), Gaps = 24/169 (14%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYN----------------- 50
           E   +  E ++  I+G+++ VL+ L      S+ +I+ DPPYN                 
Sbjct: 79  EESKNWDETENLFIEGDNLEVLKLLQKTYHSSIKMIYIDPPYNTGGDFVYEDDFQDNLNN 138

Query: 51  -LQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
            L++ GQ+   +       T++  +F +   +       L   R +L   G +++    +
Sbjct: 139 YLKITGQI-NEEGKKNSTNTENGGRFHT--KWLNMMYPRLKLARNLLNDQGVIFISIDDN 195

Query: 110 NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
               +  +   +                   R   F  +HE +   + +
Sbjct: 196 ESGNLWKVCNEIFGETNFVAEITVIVKTEGRRYGFFAKSHEKIYVYAKN 244



 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 40/108 (37%), Gaps = 20/108 (18%)

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
             D  I    G++ ++   G  +    KP  LLS I+  +T    IILD F G+ T+   
Sbjct: 374 WKDKEIISIKGTKEVQELLGSGIFDFPKPVKLLSDIITIATDQDSIILDFFSGAATTAHA 433

Query: 241 AKKLR------RSFIGI-------EMKQDYI-------DIATKRIASV 268
             K        R +I +       E  + Y        +I  +RI   
Sbjct: 434 TIKKNAEDGGTRKYIMVQLPEKSDEKSEAYKAGYKNISEIGKERIRRA 481


>gi|148977179|ref|ZP_01813806.1| ribosomal protein L11 methyltransferase [Vibrionales bacterium
           SWAT-3]
 gi|145963461|gb|EDK28724.1| ribosomal protein L11 methyltransferase [Vibrionales bacterium
           SWAT-3]
          Length = 295

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 55/168 (32%), Gaps = 12/168 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  +K         S   IP       + +     G   HPT    AL    
Sbjct: 96  WEREWMDNFHPMKFGERLWICPSWRDIPEPDAVNVMLDPGLAFGTGTHPTT---ALCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG     A KL     IGI++    +  +     + +  G  E
Sbjct: 153 LEGLDLTGKTVIDFGCGSGILAIAAIKLGAEKVIGIDIDPQALLASKD---NAERNGVAE 209

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
              +   + +P      +V   ++     L +  G I   V  +G L 
Sbjct: 210 QLEVFLPQDQPEGLLADVVVANIL--AGPLRDLSGIIKGLVKPNGVLA 255


>gi|172038696|ref|YP_001805197.1| hypothetical protein cce_3783 [Cyanothece sp. ATCC 51142]
 gi|171700150|gb|ACB53131.1| hypothetical protein cce_3783 [Cyanothece sp. ATCC 51142]
          Length = 355

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 42/109 (38%)

Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
            + A +   +       K ++     L  + +    +  WL           +      +
Sbjct: 102 MRKAPDKAYYWLNQALEKKWSGREIRLAISGDGDPKKFSWLRCGTFWYFSHCDPRFGIKY 161

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           P + P  + + ++   T+P D+++D   G G++   AK L R  +G ++
Sbjct: 162 PGRIPGQIPANLIHYFTEPNDLVVDLMAGGGSTLDAAKFLDRKCLGYDL 210


>gi|315284636|gb|EFU44081.1| hypothetical protein HMPREF9539_05428 [Escherichia coli MS 110-3]
          Length = 32

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           +   AK+L R++IG E    Y++I+ KR+  
Sbjct: 1   TLVAAKELGRNYIGFEFNPAYVEISKKRLED 31


>gi|219871611|ref|YP_002475986.1| ribosomal protein L11 methyltransferase [Haemophilus parasuis
           SH0165]
 gi|254783305|sp|B8F6T6|PRMA_HAEPS RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|219691815|gb|ACL33038.1| ribosomal protein L11 methyltransferase [Haemophilus parasuis
           SH0165]
          Length = 294

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 55/167 (32%), Gaps = 12/167 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   IP  +    + +     G   HPT    AL    
Sbjct: 95  WEREWMDNFHPMQFGKRLWICPSWREIPDPNAVNVMLDPGLAFGTGTHPTT---ALCLTW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S       ++D   GSG     A KL  +  IGI++    I  +     + +  G  +
Sbjct: 152 LDSLDLTDKTVIDFGCGSGILAIAALKLGAKKAIGIDIDPQAILASQN---NAEVNGVAD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
              L   + +P+     +V   ++     L      I   V   G L
Sbjct: 209 RLQLFLTKDQPQNLIADVVIANIL--AGPLKELAPQIITLVKPQGNL 253


>gi|319936304|ref|ZP_08010721.1| hypothetical protein HMPREF9488_01554 [Coprobacillus sp. 29_1]
 gi|319808630|gb|EFW05178.1| hypothetical protein HMPREF9488_01554 [Coprobacillus sp. 29_1]
          Length = 419

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 6/120 (5%)

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGSGTSGAVA 241
           D    I   S       G   +P +    +    +   +K  + I+ DPF GSGT+   A
Sbjct: 19  DGATYIIKQSNPNSYTHGMFKYPCKFIPEIPRWGIKKYSKKENTIVFDPFSGSGTTLLEA 78

Query: 242 KKLRRSFIGIEMK---QDYIDIATKRIASVQ--PLGNIELTVLTGKRTEPRVAFNLLVER 296
                +  G E+    +  I + T R+ + Q   L  I   +++    E  +A+  L+  
Sbjct: 79  NINGLNAYGTEIDDIAKLIIKVKTTRLDNNQINELDKIFEEIISIIYKEDAIAYIPLINN 138



 Score = 36.9 bits (84), Expect = 5.8,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 22/38 (57%), Gaps = 5/38 (13%)

Query: 13  QNSIFEWKDK-IIKGNSISVLEKLPAKSVDLIFADPPY 49
            N I ++ +  +++GN++    ++P   +DL+   PPY
Sbjct: 222 TNEIKKFGNTSLLEGNALDF--EIPN--IDLVITSPPY 255


>gi|291460838|ref|ZP_06600218.1| type III restriction-modification system EcoP15I, modification
           subunit [Fusobacterium periodonticum ATCC 33693]
 gi|291380430|gb|EFE87948.1| type III restriction-modification system EcoP15I, modification
           subunit [Fusobacterium periodonticum ATCC 33693]
          Length = 339

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 43/118 (36%), Gaps = 22/118 (18%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP-----------------DHS 63
           I+G+++ VL+ L       + +I+ DPPYN   +                       + +
Sbjct: 97  IEGDNLEVLKLLQKSYHGKIKMIYIDPPYNTGKDFVYKDNFTDNIENYKKVTGQVSEEGT 156

Query: 64  LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
            +   TD+  ++ S   +       L   R +L  +G +++    +    +  +   +
Sbjct: 157 KLTTNTDTDGRYHSN--WLNMMYPRLKLARNLLTDDGVIFISIDDNEQANLKKICDEI 212


>gi|27364635|ref|NP_760163.1| ribosomal protein L11 methyltransferase [Vibrio vulnificus CMCP6]
 gi|320155029|ref|YP_004187408.1| ribosomal protein L11 methyltransferase [Vibrio vulnificus
           MO6-24/O]
 gi|38605292|sp|Q8DD03|PRMA_VIBVU RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|27360780|gb|AAO09690.1| ribosomal protein L11 methyltransferase [Vibrio vulnificus CMCP6]
 gi|319930341|gb|ADV85205.1| ribosomal protein L11 methyltransferase [Vibrio vulnificus
           MO6-24/O]
          Length = 295

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 55/168 (32%), Gaps = 12/168 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  +K         S   IP  +    + +     G   HPT    AL    
Sbjct: 96  WEREWMDNFHPMKFGQRLWICPSWRDIPDPTAVNVMLDPGLAFGTGTHPTT---ALCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG     A KL     IGI++    +  +     + Q  G  +
Sbjct: 153 LESLDLSGKTVIDFGCGSGILAIAAIKLGAEKVIGIDIDPQALLASKD---NAQRNGVAD 209

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
              +   + +P      +V   ++     L      I   V  +G L 
Sbjct: 210 QLDVYLPQDQPEGLLADVVVANILAA--PLRELSSIIKGLVKPNGQLA 255


>gi|326560849|gb|EGE11214.1| type III restriction-modification system restriction endonuclease
           [Moraxella catarrhalis 7169]
          Length = 625

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 57/170 (33%), Gaps = 25/170 (14%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLN------------------GQLY 58
           ++  I+ +++  L+ L    A  + +I+ DPPYN   +                  G   
Sbjct: 95  QNIFIESDNLEALKILQKSYAGKIKMIYIDPPYNTGNDFIYHDDFSQSKKEYEIATGDRN 154

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
                L     +S D       +       L     +L  +G +++    +   ++  + 
Sbjct: 155 INGELLKSFKKNSKDNGHYHSNWLNMMLPRLHLAHTLLSDDGVIFISIDDNEQAQLKLLC 214

Query: 119 QNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
             +         + R+++     + +     H+ L+  + +   K Y FN
Sbjct: 215 DEVFGGENFVATLPRQTSAQRPSQEKYISITHDYLLVYAKN---KNYDFN 261



 Score = 42.3 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 20/88 (22%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGI--- 251
           E      KP  L+  +         IILD F GS T+     +L       R FI +   
Sbjct: 396 ENYFDFSKPLDLIKILAKLLNGDNSIILDFFAGSATTAHAVMQLNTEDNGNRQFIMVQLP 455

Query: 252 ----EMKQDYI-------DIATKRIASV 268
               E  + Y        +I+ +RI   
Sbjct: 456 ELTDEKSEAYKAGFKTISEISKERIRRA 483


>gi|306836193|ref|ZP_07469177.1| type III restriction-modification system DNA-methyltransferase
           [Corynebacterium accolens ATCC 49726]
 gi|304567914|gb|EFM43495.1| type III restriction-modification system DNA-methyltransferase
           [Corynebacterium accolens ATCC 49726]
          Length = 360

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 47/129 (36%), Gaps = 22/129 (17%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN------------- 54
           EN       K+  I+G+++ VL+ L       + +I+ DPPYN   +             
Sbjct: 87  ENSKDWDTTKNVFIEGDNLEVLKILQKHYHGKIKMIYIDPPYNTGKDFVYPDNYKEGLET 146

Query: 55  ----GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
                +    D   + + ++S  ++ S   +       L   R +L  +G + V      
Sbjct: 147 YLEWSKQVNEDGKKLSSNSESEGRYHSN--WLNMMYPRLKLARNLLASDGFIAVSIGDDE 204

Query: 111 IFRIGTMLQ 119
           +  +  ++ 
Sbjct: 205 VGTLRLLMD 213


>gi|148807271|gb|ABR13345.1| hypothetical protein [Pseudomonas aeruginosa]
          Length = 420

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 28/67 (41%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            +         L++R +  S  P    +DPF GSGT+    + L    + +E+     D+
Sbjct: 31  WRHFKEAFAPELVARAVRESLLPVRTCIDPFGGSGTTALACQFLGVEPVTMEVNPYLADL 90

Query: 261 ATKRIAS 267
              ++ +
Sbjct: 91  IEAKLTA 97


>gi|238789815|ref|ZP_04633597.1| Ribosomal protein L11 methyltransferase [Yersinia frederiksenii
           ATCC 33641]
 gi|238722174|gb|EEQ13832.1| Ribosomal protein L11 methyltransferase [Yersinia frederiksenii
           ATCC 33641]
          Length = 293

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 46/131 (35%), Gaps = 10/131 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    AL  + 
Sbjct: 95  WEREWMDNFHPMRFGERLWICPSWRDVPDPTAVNVMLDPGLAFGTGTHPTT---ALCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG     A KL     IGI++    I  +     + Q  G  E
Sbjct: 152 LDSLDLAGKTVIDFGCGSGILAIAALKLGATRAIGIDIDPQAIQASRD---NAQRNGVSE 208

Query: 276 LTVLTGKRTEP 286
              L   + +P
Sbjct: 209 RLELYLSKDQP 219


>gi|308062651|gb|ADO04539.1| type IIS restriction enzyme M1 protein (mod) [Helicobacter pylori
          Cuz20]
          Length = 46

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
          +KI   +  + L+KL  KSVDL   DPPYNL++
Sbjct: 4  NKIYIEDVFTFLDKLEDKSVDLAIIDPPYNLKI 36


>gi|133757378|ref|YP_001096258.1| hypothetical protein pLEW279b_p16 [Corynebacterium sp. L2-79-05]
 gi|110084153|gb|ABG49307.1| hypothetical protein [Corynebacterium sp. L2-79-05]
          Length = 633

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 49/158 (31%), Gaps = 19/158 (12%)

Query: 18  EWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP-------------- 60
           + ++  I G+++  L+ L       +  ++ DPPYN       Y                
Sbjct: 93  DSENIYIVGDNLDALKHLKNSYKGQIKCVYIDPPYNTGKGDFAYNDTFGFTIKDLVEKVG 152

Query: 61  -DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
            D    + V D   + +S  A+  F    L+  R +L   G  ++    +    +  +  
Sbjct: 153 LDEGEAERVLDLQGR-ASHSAWLTFMLPRLIIARELLASEGVFFISVDDNEQGNLRLICD 211

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
            +           +           F   HE ++  + 
Sbjct: 212 EIFHENNFVAQIVRKGTGGKQDSTHFAAKHEYVLAYAK 249



 Score = 42.7 bits (99), Expect = 0.096,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 202 KLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           K     KP   + ++L  +    GDIILD F GSG++   A +L 
Sbjct: 386 KPFKYPKPVGFVKQLLKRAGLDSGDIILDFFSGSGSTAHAAYRLG 430


>gi|289580852|ref|YP_003479318.1| DNA methylase N-4/N-6 domain protein [Natrialba magadii ATCC 43099]
 gi|289530405|gb|ADD04756.1| DNA methylase N-4/N-6 domain protein [Natrialba magadii ATCC 43099]
          Length = 366

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA-----KKLR-RSFIGI 251
            D    H  QKP  L + ++   +K GD +LDPF G G +   A     +    R  IG 
Sbjct: 92  HDLRSEHGGQKPPRLCAELIGRFSKAGDTVLDPFAGVGGTLLGASFCEHEGTGLREAIGF 151

Query: 252 EMKQDYIDI 260
           E  + + +I
Sbjct: 152 ERTERWTEI 160



 Score = 40.0 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 23/49 (46%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
            G+   ++E++   SVDL+  D PY      +  R  H   ++   S+D
Sbjct: 187 HGDCADLIEEVDDDSVDLLLTDVPYWHMDELEQTRNVHEARESKLGSFD 235


>gi|310826525|ref|YP_003958882.1| ribosomal protein L11 methyltransferase [Eubacterium limosum
           KIST612]
 gi|308738259|gb|ADO35919.1| ribosomal protein L11 methyltransferase [Eubacterium limosum
           KIST612]
          Length = 314

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 70/200 (35%), Gaps = 12/200 (6%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSSTKPG 224
            Y       + + ++  W        E + N D      T   E   L    L    +P 
Sbjct: 116 KYYKPTRVGKSIIIKPTWEDYTPEVDEIVVNMDPGMAFGTGTHETTQLCVTKLEEYIRPD 175

Query: 225 DIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
           D++LD   G+G    +A +L  R  IG++     + +A + IA       IE+       
Sbjct: 176 DMVLDIGCGTGILSIIAGELGCRHVIGVDFDPVAVKVARENIALNHMEDKIEIREGNLLD 235

Query: 284 TEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGA--KVSGS 341
                    ++   ++   + +      I   +  DG  IS   +    R+ A  K    
Sbjct: 236 VIAEDEKAEIIVANIL--AEAIIELARMIKPYLKEDGVFISSGIIND--RLEAVLKTLND 291

Query: 342 ETCNGWNFWYFEKLGELHSI 361
           E   G+     E++GE +S+
Sbjct: 292 E---GFEVLNIEQMGEWNSV 308


>gi|289450726|ref|YP_003475098.1| 50S ribosomal protein L11 methyltransferase [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289185273|gb|ADC91698.1| ribosomal protein L11 methyltransferase [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 347

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 5/106 (4%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSSTKPGD 225
           Y      ++ + +  +W        +++   +      T   E  AL  ++L  + KP D
Sbjct: 153 YYHPIEISDSLVICPEWEDYNLKPGQKMIKMNPGSAFGTGSHETTALCLKLLAENMKPTD 212

Query: 226 IILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATK--RIASV 268
           +ILD   GSG     A KL    I  I++    + +     R+ +V
Sbjct: 213 LILDLGCGSGILAIAAAKLGGKSITAIDIDPLAVKVCQDNIRLNNV 258


>gi|193214865|ref|YP_001996064.1| DNA methylase N-4/N-6 domain-containing protein [Chloroherpeton
           thalassium ATCC 35110]
 gi|193088342|gb|ACF13617.1| DNA methylase N-4/N-6 domain protein [Chloroherpeton thalassium
           ATCC 35110]
          Length = 525

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 11/99 (11%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSST--- 221
           N        E +    +W +      E    K   +LHP +      L+   L S     
Sbjct: 60  NGRRENDWKERLGDDLNWALSFDWLKETDTTKHVHRLHPYKGKFIPQLVEYFLDSHVDDF 119

Query: 222 ------KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                   GDI+LDPF GSGT+   A +L    +G+++ 
Sbjct: 120 KKEIYFNAGDIVLDPFSGSGTTMVQAGELGLHAVGVDIS 158


>gi|255523169|ref|ZP_05390140.1| DNA methylase N-4/N-6 domain protein [Clostridium carboxidivorans
           P7]
 gi|296186135|ref|ZP_06854540.1| DNA (cytosine-5-)-methyltransferase [Clostridium carboxidivorans
           P7]
 gi|255513037|gb|EET89306.1| DNA methylase N-4/N-6 domain protein [Clostridium carboxidivorans
           P7]
 gi|296049403|gb|EFG88832.1| DNA (cytosine-5-)-methyltransferase [Clostridium carboxidivorans
           P7]
          Length = 625

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 70/195 (35%), Gaps = 23/195 (11%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKL-------PAKSVDLIFADPPYNLQL 53
           +++     I    N+I    + II+G+++  L  L         + ++ I  DPPYN   
Sbjct: 65  LTEVKEKEIKSGNNNI---TNVIIEGDNLYALNTLLFTHGINDERQIN-IIIDPPYNTGN 120

Query: 54  NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
              +Y       D   +  D +   + + +F    L   R +L  +G +++    +   +
Sbjct: 121 KDFIYN------DNYVNGEDTYRHSK-WISFMNKRLRLSRELLSSDGVIFISIDDNEQSQ 173

Query: 114 IGTMLQNLN--FWILNDIVWRKSNPMPNFRG---RRFQNAHETLIWASPSPKAKGYTFNY 168
           +  +  ++      +N I  +  N      G   ++ +   E L+    + +       Y
Sbjct: 174 LKMLCDDVFGEDNFINCISVKTKNASGASGGGEDKKLKKNIEYLLIYCKNRERCNLKAVY 233

Query: 169 DALKAANEDVQMRSD 183
                 N   + R +
Sbjct: 234 KEYPLMNLINERREE 248


>gi|77164866|ref|YP_343391.1| hypothetical protein Noc_1367 [Nitrosococcus oceani ATCC 19707]
 gi|254433780|ref|ZP_05047288.1| hypothetical protein NOC27_711 [Nitrosococcus oceani AFC27]
 gi|76883180|gb|ABA57861.1| conserved hypothetical protein [Nitrosococcus oceani ATCC 19707]
 gi|207090113|gb|EDZ67384.1| hypothetical protein NOC27_711 [Nitrosococcus oceani AFC27]
          Length = 746

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 70/194 (36%), Gaps = 23/194 (11%)

Query: 1   MSQKNSLAINENQNSIFEWKDKII--KGNSISVLEKLPAKSVDLIFADPPYNLQLNG--- 55
           +S+K   +I ++ +S    K ++     +S +    LP  SVD +  DPP+   ++    
Sbjct: 479 LSEKIGFSIADSFSSFAAGK-RVYLSCADSSAT--DLPEHSVDAVLTDPPFFDNVHYSQL 535

Query: 56  ---------QLYRPDHSLVDAVTDSWDKFSSFE--AYDAFTRAWLLACRRVLKPNGTL-- 102
                     +   +    D  T S ++  S E  A+     A  +   R+LK +G L  
Sbjct: 536 ADFFHVWQRHILGSNGYRQDYTTRSRNEVQSAEVNAFTDRLTAVWIEVHRILKDDGILAF 595

Query: 103 -WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAH-ETLIWASPSPK 160
            +          +   L    F I      +    +   + +  +  + + +I      +
Sbjct: 596 TYHHSRPEGWRSVLHALMAAGFGITAAHPMKAEMSVAMPKHQAKEPINLDIIIVCRKRSQ 655

Query: 161 AKGYTFNYDALKAA 174
            + + +N D  + A
Sbjct: 656 LQRHCWNGDLWETA 669



 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
              I+ DPF GSGT+   A KL    IG ++      +    + S+     I  T    +
Sbjct: 108 KDAIVFDPFMGSGTTIGEALKLGARGIGRDINPVAYFLVKNAL-SIHDRPAILATFRDIE 166

Query: 283 R 283
           R
Sbjct: 167 R 167


>gi|281419824|ref|ZP_06250823.1| type III restriction-modification system methylation subunit
           [Prevotella copri DSM 18205]
 gi|281406124|gb|EFB36804.1| type III restriction-modification system methylation subunit
           [Prevotella copri DSM 18205]
          Length = 960

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR--RSF 248
           G   + N+ G +L   +KP  L  R++   +  GD ILD F GS T        +    +
Sbjct: 676 GINNVHNEGGVQLPNGKKPVKLFERLIKMLSNDGDYILDIFAGSATIVHACLNSKSSHKY 735

Query: 249 IGIEMKQDYI-DIATKRIASV 268
           I I+    Y  +   +R  +V
Sbjct: 736 IAIQSDYSYFNEKTLRRAENV 756



 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 70/228 (30%), Gaps = 45/228 (19%)

Query: 3   QKNSLAINENQNSIFEWKDKI---------------IKGNSISVLEKLPAK---SVDLIF 44
           + N   + + +    E+K K+               I   +   L+ L  K    +  + 
Sbjct: 380 EDNPFLVLDTKFFSAEFKHKLVGSMEKVDEECNGLLINSENFQALDLLQEKYRGKIGAVI 439

Query: 45  ADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
            DPPYN   +  LY+ +++                ++ +     L     +++ N  + +
Sbjct: 440 TDPPYNTGGDDFLYKDNYA--------------DSSWLSLMSERLKLSYSLMRDNAWISL 485

Query: 105 IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR---GRRFQNAHETLIWASP---- 157
             +   ++ +  M+   ++  +N I  + S+          ++     E ++ A+     
Sbjct: 486 NINDIELYNLVNMMSMQDWSNINQICVKMSHLSGMKMSHIDKKIPKIKEQIVTATKGSES 545

Query: 158 ------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
                  P +    F+         +     DW         +    D
Sbjct: 546 TLNPIYEPCSWDDVFSRYVSWMEFNNSDNPKDWTKTTVRAKAKEFGVD 593


>gi|154148728|ref|YP_001406581.1| adenine specific DNA methyltransferase [Campylobacter hominis ATCC
           BAA-381]
 gi|153804737|gb|ABS51744.1| adenine specific DNA methyltransferase [Campylobacter hominis ATCC
           BAA-381]
          Length = 227

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 17/106 (16%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGD--IILDPFFGSGTSGAVAKKL------RRSFIG 250
           + + +    KP  L+ +++   T   D  IILD F GSGT+     +L       R FI 
Sbjct: 3   NKKVVFDYPKPVKLIKQMINLYTNSNDNDIILDFFAGSGTTVHAVMELNAEDGGNRKFIL 62

Query: 251 IEMKQD--------YIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
           +++ +           D     + S  P+ + ++TV   KR   ++
Sbjct: 63  MQINEKIDEQKSKTAYDFCKNELKSKIPVIS-DITVKRVKRAAAKI 107


>gi|332289602|ref|YP_004420454.1| ribosomal protein L11 methyltransferase [Gallibacterium anatis
           UMN179]
 gi|330432498|gb|AEC17557.1| ribosomal protein L11 methyltransferase [Gallibacterium anatis
           UMN179]
          Length = 293

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD-- 199
           G+  + +   +         + +  N+  LK         S   IP  +    + +    
Sbjct: 77  GKIHEQSAYKIEQIEDKDWEREWMDNFHPLKFGKRLWICPSWREIPDPTAVNVMLDPGLA 136

Query: 200 -GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDY 257
            G   HPT    AL      S       ++D   GSG     A KL  ++ IGI++    
Sbjct: 137 FGTGTHPTT---ALCLEWFDSLDLLDKTVIDFGCGSGILAIAALKLGAKNAIGIDIDPQA 193

Query: 258 IDIATK 263
           I  + +
Sbjct: 194 IQASRE 199


>gi|166364158|ref|YP_001656431.1| hypothetical protein MAE_14170 [Microcystis aeruginosa NIES-843]
 gi|166086531|dbj|BAG01239.1| hypothetical protein MAE_14170 [Microcystis aeruginosa NIES-843]
          Length = 422

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 29/56 (51%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            G   +P +    ++   L + TK  D I+DPF GSGT G  AK  +R+ +  ++ 
Sbjct: 39  HGIYYYPAKFIPQVVRFCLDNYTKKDDWIIDPFAGSGTVGLEAKLCQRNAVLTDLN 94


>gi|159030020|emb|CAO90401.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 397

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 29/84 (34%), Gaps = 2/84 (2%)

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPT--QKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
             D+  PI      +  K    L     Q    L+  IL        +ILDPF GSGT  
Sbjct: 1   MPDFDQPIPQEKLDIIEKTRANLFVWRGQFSPQLIETILSFYCPSNSVILDPFVGSGTVL 60

Query: 239 AVAKKLRRSFIGIEMKQDYIDIAT 262
             A  L     G E+      ++ 
Sbjct: 61  LEASYLSLEAYGFEINPAAYIMSR 84


>gi|254524665|ref|ZP_05136720.1| type III restriction system methylase [Stenotrophomonas sp. SKA14]
 gi|219722256|gb|EED40781.1| type III restriction system methylase [Stenotrophomonas sp. SKA14]
          Length = 666

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 45/121 (37%), Gaps = 21/121 (17%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRP---------------- 60
           ++ +I+G+++ VL+ L    A  V LI+ DPPYN   +                      
Sbjct: 103 QNLMIEGDNLEVLKLLQKSYAGKVKLIYIDPPYNTGKDFVYPDNFQDNIKNYLELTGQVE 162

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
               + + T++  +F +   +       L   + +L  +G + +         +  ++  
Sbjct: 163 GGQRISSNTEASGRFHT--DWLNMMYPRLKLAKNLLLDSGLIIISIDSSEATNLRLIMDE 220

Query: 121 L 121
           +
Sbjct: 221 V 221



 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 7/59 (11%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV--AKKL----RRSFIGIEMKQDYID 259
            KP +L+   +     P DIILD F G+GT+G    A+       R FI +++   Y+D
Sbjct: 419 PKPRSLIRDFVTIGASPQDIILDFFAGTGTTGHAVMAQNFLDEGNRRFILVQL-PQYLD 476


>gi|332798819|ref|YP_004460318.1| DNA methylase N-4/N-6 domain-containing protein [Tepidanaerobacter
           sp. Re1]
 gi|332696554|gb|AEE91011.1| DNA methylase N-4/N-6 domain protein [Tepidanaerobacter sp. Re1]
          Length = 419

 Score = 51.1 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 26/67 (38%)

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
            +  +R  +   E  +       L    +   T+  D + DPF G GT+   A  L R+ 
Sbjct: 51  WTSRQRQASPLHEVSYRACFKPQLPRFFINLLTEEKDTVYDPFSGRGTTVIEAGILGRNI 110

Query: 249 IGIEMKQ 255
           I  ++  
Sbjct: 111 ISNDINP 117



 Score = 39.2 bits (90), Expect = 0.99,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 5/73 (6%)

Query: 33  EKLPAKSVDLIFADPPYN--LQLNGQLY-RPDHSLVDAVTDSWDKFSS--FEAYDAFTRA 87
            ++P +SV L    PP+   +Q +   + R   + +DA   + +   S   E + +    
Sbjct: 278 SEIPDESVSLTVTSPPFLDVVQYDKDNWLRCWFNDIDAEEIANNITMSRTIEEWSSVMLD 337

Query: 88  WLLACRRVLKPNG 100
                 R+ K  G
Sbjct: 338 VFKELYRITKKGG 350


>gi|219848032|ref|YP_002462465.1| hypothetical protein Cagg_1119 [Chloroflexus aggregans DSM 9485]
 gi|219542291|gb|ACL24029.1| conserved hypothetical protein [Chloroflexus aggregans DSM 9485]
          Length = 1030

 Score = 51.1 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 49/147 (33%), Gaps = 2/147 (1%)

Query: 101 TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
           T W +G    +  +   ++  +       + R       F   + ++          +  
Sbjct: 71  THWPMGDDERLRELAEQMRKAHRSAPATDLLRLWKDAVGFPHGKIEDILNLSDPPYYTAC 130

Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP--TQKPEALLSRILV 218
              +  ++        D Q       P  +     +N      H   T+ P   + R ++
Sbjct: 131 PNPFIGDFIRSYGKPYDPQTDDYRREPFAADVSEGKNDPIYNAHSYHTKVPHKAIMRYIL 190

Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLR 245
             T+PGD++ D F G+G +G  A+   
Sbjct: 191 HYTEPGDVVFDGFCGTGMTGVAAQLCG 217



 Score = 36.5 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 34/110 (30%), Gaps = 13/110 (11%)

Query: 40  VDLIFADPPY---------NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
           VD IF DPP+         N      L    ++  +A+ +   +      Y     A   
Sbjct: 587 VDYIFTDPPFGGNLMYSELNFLWEAWLKVFTNNKPEAIENQT-QGKGLAEYQRLMTACFK 645

Query: 91  ACRRVLKPNGTL-WVIGSYHN--IFRIGTMLQNLNFWILNDIVWRKSNPM 137
              RVLKP   +     +  N     I   LQ   F I +     K    
Sbjct: 646 EYYRVLKPGRWMTVEFHNSKNAVWNAIQEALQAAGFVIADVRTLDKQQGS 695


>gi|297380019|gb|ADI34906.1| Adenine-specific DNA methylase [Helicobacter pylori v225d]
          Length = 470

 Score = 51.1 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 17/114 (14%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
           +N  S  E    +IK  +   L  L     +++D I+ DPPYN Q N  +Y  +      
Sbjct: 366 KNLFSEDEINGTLIKSENYQALNSLKNRYKETIDCIYIDPPYNTQNNEFIYADNFKRSS- 424

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
                        + +     L    ++L   G ++V    +    + T++  +
Sbjct: 425 -------------WLSMMDNRLELAHKLLNDKGVIFVSIDDNEQAYLKTLMDEV 465


>gi|159028688|emb|CAO88159.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 357

 Score = 51.1 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 48/156 (30%), Gaps = 11/156 (7%)

Query: 109 HNIFRIGTMLQNLNF-WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
           H  +    +            ++ R +   P        +    +     +P    Y  N
Sbjct: 55  HPNYHFKALSDACGISESRLQLLARTAKFYPPKERFHQLSVSHHIEAMRKAPTEAHYWLN 114

Query: 168 YDALKAAN----------EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
               K  N               +  WL           +      +P + P  + + ++
Sbjct: 115 QALEKKWNSTDIRLAITGNGDPQKFSWLRCGTFWYFSHCDPRFGIKYPGRIPGQIAANLI 174

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
              T+P D+++D   G G++   A+ L R  +G ++
Sbjct: 175 HYFTEPDDLVVDLMAGGGSTLDAAQFLDRRCLGYDL 210


>gi|326407996|gb|ADZ65064.1| adenine-specific DNA methylase [Lactococcus lactis subsp. lactis
           CV56]
          Length = 728

 Score = 51.1 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 74/247 (29%), Gaps = 29/247 (11%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
           + +N  A   N  S     D     +++  ++     SVD +  DPPY+ +   + Y   
Sbjct: 103 ANRNKFASVTNDLSTEYDTD--YHLDALDFMKMFDTASVDGVLYDPPYSPRQVSECYNNI 160

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG------SYHNIFRI- 114
                 +  +WD   +     +F         R+ K  G +   G       Y   F I 
Sbjct: 161 -----GLNVTWDTTKA-----SFWGNHKREISRITKIGGKVITFGWNSGGIGYKYGFEIS 210

Query: 115 GTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
             +L     W  + I   +            Q   E  I    S   +      + L A 
Sbjct: 211 RILLVPHGGWHNDTICTVEIKTHEGVYSTMEQKESEVQIDGVNSSLTETDRILIEKLSAL 270

Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK--PGDIILDPFF 232
            E+     +         +      G   +P      +   I+       P   +LDPF 
Sbjct: 271 PENYWDFKE--------DDTREYTHGLHNYPAMMVCPISRNIIRMMKDIMPISSLLDPFS 322

Query: 233 GSGTSGA 239
           GSGT   
Sbjct: 323 GSGTVLV 329



 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN 50
           + K  I K ++ ++L+ +P  S DLI   PPY 
Sbjct: 529 DSKVTIYKNDA-ALLDDVPNNSFDLIVTSPPYG 560


>gi|29834108|ref|NP_828742.1| hypothetical protein SAV_7566 [Streptomyces avermitilis MA-4680]
 gi|29611233|dbj|BAC75277.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 136

 Score = 51.1 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 11/90 (12%)

Query: 286 PRVAFNLLVERGLIQPGQILTNAQGNI----SATVCADGTLISGTELG---SIHRVGAKV 338
           P      L++  L++ G +LT  Q        A V  DG L+         S  +    V
Sbjct: 45  PHGPLADLMQADLLKAGTVLTFHQRRANRSGRAVVTPDGQLVVDGHATPYPSPSKAAEAV 104

Query: 339 SGSETCNGWNFWYFEKLGELHSINTLRILV 368
           +G+   NGW  W+ E    L   + LR  +
Sbjct: 105 TGN-VINGWTLWHVEDGRTL---DVLRREL 130


>gi|108563738|ref|YP_628054.1| type III restriction enzyme M protein [Helicobacter pylori HPAG1]
 gi|107837511|gb|ABF85380.1| type III restriction enzyme M protein [Helicobacter pylori HPAG1]
          Length = 474

 Score = 51.1 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 17/114 (14%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
           ++Q +  E    +IK  +   L  L     +++D I+ DPPYN Q N  +Y  +      
Sbjct: 370 KSQFNEDEINGTLIKSENYQALNSLKNRYKETIDCIYIDPPYNTQNNEFIYADNFKRSS- 428

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
                        + A     L     +L   G ++V    +       ++  +
Sbjct: 429 -------------WLAMMENRLELAHALLNDKGVMFVSIDDNEQAYCKVLMDEV 469


>gi|222481228|ref|YP_002567464.1| adenine-specific DNA methylase [Halorubrum lacusprofundi ATCC
           49239]
 gi|222454604|gb|ACM58867.1| adenine-specific DNA methylase [Halorubrum lacusprofundi ATCC
           49239]
          Length = 878

 Score = 51.1 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 26/60 (43%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           PEAL    L         +LDPF G GT+   A ++  + IG ++         K I SV
Sbjct: 85  PEALWDYYLEDVDFGDKTVLDPFMGGGTTIVEALRMGCNVIGSDLNPVAWFTVKKEIESV 144



 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 47/150 (31%), Gaps = 28/150 (18%)

Query: 35  LPAKSVDLIFADPPYNLQLNG-------------------------QLYRPDHSLVDAVT 69
           +  KSVD I  DPPY                               +  +   ++VD   
Sbjct: 500 IEDKSVDAIITDPPYYDNEMYAELSDFYYVWLHEVLSDTYDHFQGERTPKKSEAVVDPAK 559

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL--NFWILN 127
           D  DK  + E Y           RR L  +G +     +      G+ LQ++    + ++
Sbjct: 560 DVEDK-RTEEHYIETLTNVFNESRRKLADDGIMAFTFHHKETEAWGSTLQSVLDADFYIS 618

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
            +    S      R  R    ++T+I    
Sbjct: 619 ALYPVNSETRGGTRHGRATVDYDTIIVCRK 648


>gi|326571646|gb|EGE21661.1| type III restriction-modification system restriction endonuclease
           [Moraxella catarrhalis BC7]
          Length = 537

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 57/170 (33%), Gaps = 25/170 (14%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLN------------------GQLY 58
           ++  I+ +++  L+ L    A  + +I+ DPPYN   +                  G   
Sbjct: 7   QNIFIESDNLEALKILQKSYAGKIKMIYIDPPYNTGNDFIYHDDFSQSKKEYEIATGDRN 66

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
                L     +S D       +       L     +L  +G +++    +   ++  + 
Sbjct: 67  INGELLKSFKKNSKDNGHYHSNWLNMMLPRLHLAHTLLSDDGVIFISIDDNEQAQLKLLC 126

Query: 119 QNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
             +         + R+++     + +     H+ L+  + +   K Y FN
Sbjct: 127 DEIFGGENFVATLPRQTSAQRPSQEKYISITHDYLLVYAKN---KNYDFN 173



 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 20/88 (22%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGI--- 251
           E      KP  L+  +         IILD F GS T+     +L       R FI +   
Sbjct: 308 ENYFDFSKPLDLIKILAKLLNGDNSIILDFFAGSATTAHAVMQLNTEDNGNRQFIMVQLP 367

Query: 252 ----EMKQDYI-------DIATKRIASV 268
               E  + Y        +I+ +RI   
Sbjct: 368 ELTDEKSEAYKAGFKTISEISKERIRRA 395


>gi|326569748|gb|EGE19798.1| type III restriction-modification system restriction endonuclease
           [Moraxella catarrhalis BC8]
          Length = 537

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 57/170 (33%), Gaps = 25/170 (14%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLN------------------GQLY 58
           ++  I+ +++  L+ L    A  + +I+ DPPYN   +                  G   
Sbjct: 7   QNIFIESDNLEALKILQKSYAGKIKMIYIDPPYNTGNDFIYHDDFSQSKKEYEIATGDRN 66

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
                L     +S D       +       L     +L  +G +++    +   ++  + 
Sbjct: 67  INGELLKSFKKNSKDNGHYHSNWLNMMLPRLHLAHTLLSDDGVIFISIDDNEQAQLKLLC 126

Query: 119 QNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
             +         + R+++     + +     H+ L+  + +   K Y FN
Sbjct: 127 DEIFGGENFVATLPRQTSAQRPSQEKYISITHDYLLVYAKN---KNYDFN 173



 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 20/88 (22%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGI--- 251
           E      KP  L+  +         IILD F GS T+     +L       R FI +   
Sbjct: 308 ENYFDFSKPLDLIKILAKLLNGDNSIILDFFAGSATTAHAVMQLNTEDNGNRQFIMVQLP 367

Query: 252 ----EMKQDYI-------DIATKRIASV 268
               E  + Y        +I+ +RI   
Sbjct: 368 ELTDEKSEAYKAGFKTISEISKERIRRA 395


>gi|331269801|ref|YP_004396293.1| cyclopropane-fatty-acyl-phospholipid synthase [Clostridium
           botulinum BKT015925]
 gi|329126351|gb|AEB76296.1| cyclopropane-fatty-acyl-phospholipid synthase [Clostridium
           botulinum BKT015925]
          Length = 391

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 58/304 (19%), Positives = 104/304 (34%), Gaps = 31/304 (10%)

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           + F +        V   +GT+   G   + F+I          I+ D          +  
Sbjct: 7   NKFLKDLFSETCEVQYWDGTIEKFGEGESKFKILINEHISEKDIIKDPFLTLGEAYMDNI 66

Query: 142 GRRFQNAHETL---------IWASPSPKAKGYTFNYDALKAANEDVQMRSD--------W 184
                N  E +              S  +K YT    ++K   +D+Q   D        W
Sbjct: 67  IDFQGNIQEIIESIYKNKESFLHKASLFSKLYTVTRHSIKQNKKDIQYHYDLGNDFYSLW 126

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA-VAKK 243
           L    S S      + + L+  Q+   +   +   +   GD +LD   G G      AK+
Sbjct: 127 LDKTMSYSCAYFKNNNDSLYDAQRN-KVSYILKKLNLNKGDTLLDIGCGWGELIIDAAKE 185

Query: 244 LRRSFIGIEMKQDYIDIATKRIA--SVQPLGNIELTVLTGKRTEPRVAFNLLVERGLI-Q 300
                 GI + ++ ++ A +RI   +++ L  I+L        E +  FN +V  G+I  
Sbjct: 186 YGVKATGITLSEEQVEKANQRIKENNLEDLVEIKLMDYRELIKEHK-KFNRIVSVGMIEH 244

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
            G+          + +  D  +        +H + A++ G    N W   +    G + S
Sbjct: 245 VGRKNIPKFIEDVSKLLEDEGVSL------LHCITAQIEGEA--NEWIKRHVFPGGYIPS 296

Query: 361 INTL 364
           I  L
Sbjct: 297 IREL 300


>gi|313667099|gb|ADR72995.1| M2.BsrI [Geobacillus stearothermophilus]
          Length = 389

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
            G   +P + P  +  ++L    K   ++LDPF GSGT+   A       +G ++  
Sbjct: 25  HGIHSYPAKFPPQIPGKLLDKFAKDNYVVLDPFCGSGTTLVEASLRNLDSVGNDINP 81



 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 58/147 (39%), Gaps = 18/147 (12%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP-------------DHS 63
           FE++ KII  ++ ++++ + ++S+D+I   PPY    +  LY                + 
Sbjct: 217 FEYETKIISNDARNLID-IRSESIDIIITSPPYANTYDYYLYHKHRMNWLGYNFKETQNI 275

Query: 64  LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY----HNIFRIGTMLQ 119
            + +  +   K    E +       L    RV+K +   ++I           +I  +++
Sbjct: 276 EIGSRNEYSSKKQKPEKWKHDLMLVLQEMYRVMKKDRLCFIIIGDSVINKEHIKINDVIR 335

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQ 146
            +   I  + +  +S P+     +  +
Sbjct: 336 EIATKIGFEYLNEESVPLSKNSRKFNK 362


>gi|295111483|emb|CBL28233.1| Adenine specific DNA methylase Mod [Synergistetes bacterium SGP1]
          Length = 642

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 55/163 (33%), Gaps = 22/163 (13%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY-------------RPDHSLVDA 67
           I+G+++ VL+ L       V +I+ DPPYN   +  +Y             R      D 
Sbjct: 102 IEGDNLDVLKLLQESYFGKVKVIYIDPPYNTGSDRFVYSDTFAVSEEEYLERSGAKGEDG 161

Query: 68  V----TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN- 122
                 +++        + +     LL  R +L  +G +++    + +  +  +      
Sbjct: 162 TVLFRENNFANPRFHSDWLSMMYPRLLLARNLLSDDGVIFISIDENEVSNLQKLCNEAFG 221

Query: 123 -FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
                   +W ++N  P    +  +     L +       K +
Sbjct: 222 ERNYAATFLWTRTNTPPALSCKCRKTVEYVLAYEKRRSALKYF 264



 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 8/60 (13%)

Query: 202 KLHPTQKPEALLSRI--LVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
           K     KP +L+  +  +V +     ++LD F GSGT+     ++       R FI +++
Sbjct: 404 KCFDYAKPLSLVQAVARMVCAQDKEALVLDFFSGSGTTADAIMRMNAEDGGRRRFIMVQI 463


>gi|218442045|ref|YP_002380374.1| hypothetical protein PCC7424_5156 [Cyanothece sp. PCC 7424]
 gi|218174773|gb|ACK73506.1| conserved hypothetical protein [Cyanothece sp. PCC 7424]
          Length = 393

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY--IDIATKR 264
           Q    L+  IL S      +ILDPF GSGT    A  L     G E+      +    + 
Sbjct: 29  QFSPQLIEVILNSYCLSNSVILDPFAGSGTVLLEAGILELEAYGFEINPAAWILSKIYEF 88

Query: 265 IASVQPLGNIELTVLTGKRTEPRVAFNLLV 294
           I + Q   +++       R  P + F+  V
Sbjct: 89  INNYQRKESVKTIRKLIDREFPFIIFDNDV 118



 Score = 37.7 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 19/107 (17%)

Query: 35  LPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAV-------------TDSWDKFSSFEA 80
           L    +D +   PPY N+    Q YR    +++                +  ++F +   
Sbjct: 194 LKNDQIDFVVTSPPYINVFNYHQNYRKSTEILEWDLLKIAKSEIGSNRANRGNRFYTVVQ 253

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNI-----FRIGTMLQNLN 122
           Y       L    RV K +  + +I  + +      F    +++ + 
Sbjct: 254 YCLDMADTLRELSRVTKKDARIVLIVGHESNVLGVPFYNADIIEKIG 300


>gi|192360125|ref|YP_001982060.1| hypothetical protein CJA_1580 [Cellvibrio japonicus Ueda107]
 gi|190686290|gb|ACE83968.1| hypothetical protein CJA_1580 [Cellvibrio japonicus Ueda107]
          Length = 280

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 55/162 (33%), Gaps = 22/162 (13%)

Query: 12  NQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLN-------------- 54
           N       ++  I+G+++ VL+ L       + LI+ DPPYN   +              
Sbjct: 58  NSKDWDTTQNVFIEGDNLEVLKILQRHYHNKIKLIYIDPPYNTGKDFVYPDNYKEGLDTY 117

Query: 55  ---GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
               +    D   V   +++  ++ S   +       L   R +L  +G +++    + +
Sbjct: 118 LEWTRQVNEDGKKVSTNSETEGRYHSN--WLNMMYPRLKLARNLLTDDGVIFISIDDNEV 175

Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
             +  +   +           +     N +G  +    + L+
Sbjct: 176 DNLKKLCNEVFGEKNFIGCAGRITKKSNNKGDFWAPNFDYLL 217


>gi|308064144|gb|ADO06031.1| Adenine-specific DNA methylase [Helicobacter pylori Sat464]
          Length = 477

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 17/114 (14%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
           +N  S  E    +IK  +   L  L     +++D I+ DPPYN Q N  +Y  +      
Sbjct: 366 KNLFSEDEINGTLIKSENYQALNSLKNRYKETIDCIYIDPPYNTQNNEFIYADNFKRSS- 424

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
                        + +     L   R++L   G ++V    +    +  ++  +
Sbjct: 425 -------------WLSMMSNRLELARKLLNDKGVMFVSIDDNEQAYLKALMDEV 465


>gi|68249563|ref|YP_248675.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
           86-028NP]
 gi|81336008|sp|Q4QLT2|PRMA_HAEI8 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|68057762|gb|AAX88015.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
           86-028NP]
          Length = 295

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 59/182 (32%), Gaps = 14/182 (7%)

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEK 202
            N    +         + +  N+  ++         S   +P  +    + +     G  
Sbjct: 81  SNTAYKIEQIEDKDWEREWMDNFHPMQFGKRLWICPSWRDVPDKNAVNVMLDPGLAFGTG 140

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYIDIA 261
            HPT    AL    L S       ++D   GSG     A KL     +GI++    I  +
Sbjct: 141 THPTT---ALCLEWLDSLDLKNKTVIDFGCGSGILAIAALKLGAKSAVGIDIDPQAILAS 197

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ-PGQILTNAQGNISATVCADG 320
                + +  G ++   L     +P      +V   ++  P + L      IS  V  +G
Sbjct: 198 RD---NAEQNGVVDRLQLFLSDEKPSDLKADVVVANILAGPLKELYPI---ISQLVKPNG 251

Query: 321 TL 322
            L
Sbjct: 252 NL 253


>gi|282890359|ref|ZP_06298887.1| hypothetical protein pah_c016o076 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499741|gb|EFB42032.1| hypothetical protein pah_c016o076 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 475

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%)

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
           ++LDPF GSGT   VA KL     GIE       +   +++  + + N E+ +   KR
Sbjct: 103 VVLDPFVGSGTVCVVADKLGIHSYGIESHPFVYRLGNGKLSWDENIENFEVAINDLKR 160



 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG 55
           QN   E   K+I+ ++ + L  +P  S+DL+   PPY    + 
Sbjct: 265 QNQSKESLAKLIQSDART-LAGVPDNSIDLVITSPPYANNYDY 306


>gi|328463318|gb|EGF35006.1| adenine-specific DNA-methyltransferase [Lactobacillus helveticus
           MTCC 5463]
          Length = 520

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 46/123 (37%), Gaps = 18/123 (14%)

Query: 17  FEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQ----LNGQLYRPDHSLVDAVT 69
            E K+  ++G+++ VL+ L    ++ + +++ DPPYN               ++ +    
Sbjct: 63  DETKNVYVEGDNLEVLKLLQKAYSEKIKMVYIDPPYNRGHDFIYKDNFTNSYNNYLKETG 122

Query: 70  --DSWDKFSS---------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
             D   + ++            +       L   R +L+ +G +++    +    +  + 
Sbjct: 123 QIDENGQKTTTSPESNGRFHTDWLNMMYPRLKLARNLLRDDGVIFISIDDNEAVNLRKIC 182

Query: 119 QNL 121
             +
Sbjct: 183 DEI 185



 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 7/89 (7%)

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
            +D       G   +++  G+ +    K  AL+ +++   T    I+LD F GS T+   
Sbjct: 355 WNDKEYNNDYGKRAIKDLFGKNIMSFPKSPALIKKMIDIGTDNDSIVLDFFSGSATTAQA 414

Query: 241 AKKLR------RSFIGIEMKQDYIDIATK 263
             +        R FI I++  + I+I+TK
Sbjct: 415 VLEKNVEDNGKRKFIMIQL-PEKINISTK 442


>gi|315651943|ref|ZP_07904945.1| type III restriction-modification system [Eubacterium saburreum DSM
           3986]
 gi|315485772|gb|EFU76152.1| type III restriction-modification system [Eubacterium saburreum DSM
           3986]
          Length = 254

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 20/88 (22%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGI--- 251
           + +    KP + + +++  +T+   I++D F GS T+     +L       R FI +   
Sbjct: 15  KNVFSYPKPVSFIEKVVRYTTEKDAIVMDFFSGSATTAHAVMQLNAEDGGHRKFIMVQLP 74

Query: 252 ----EMKQDY-------IDIATKRIASV 268
               E  + Y        +I  +RI   
Sbjct: 75  EATDEKSEAYKAGYKNICEIGKERIRRA 102


>gi|167933130|ref|ZP_02520217.1| DNA methylase N-4/N-6 [candidate division TM7 single-cell isolate
           TM7b]
          Length = 282

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 59/191 (30%), Gaps = 24/191 (12%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN-------GQLYRPDHSLVDAVTD 70
           +  I+G++++ L+ L       V +I+ DPPYN   +        Q  R   +      D
Sbjct: 85  NMFIEGDNLAALKILHKAYYGKVKMIYIDPPYNTGNDFIYNDDSKQTRRSYETEAGITDD 144

Query: 71  SWDKFSS-----------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
             +                  +       L   R +L+ +G ++V    + +  +  M+ 
Sbjct: 145 EGNVVRDDGLRTNTGGHKHSNWLNMMYPRLFLARNLLRQDGVIFVSIDDNEVHNLRLMMN 204

Query: 120 NL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETL--IWASPSPKAKGYTFNYDALKAANE 176
            +         V  +         + F   H+ +  I        +      +    +N 
Sbjct: 205 EIFGEENFVAQVIWEKVHTRKNSAQYFSYNHDYVVTIARKKDEWKRKLIPRENNSAYSNP 264

Query: 177 DVQMRSDWLIP 187
           D   +  W + 
Sbjct: 265 DNDPKGVWKLD 275


>gi|219853285|ref|YP_002467717.1| methyltransferase DNA modification enzyme [Methanosphaerula
           palustris E1-9c]
 gi|219547544|gb|ACL17994.1| methyltransferase DNA modification enzyme [Methanosphaerula
           palustris E1-9c]
          Length = 410

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
             KP+ L    +   T+ G+ + DPF G GT+   A  L R  I  ++      +   R 
Sbjct: 62  CFKPQ-LPGFFIRLLTREGETVYDPFSGRGTTAIEAGLLGRQVIANDINPLSAILTAPRF 120


>gi|109947284|ref|YP_664512.1| methyltransferase fragment 2 [Helicobacter acinonychis str. Sheeba]
 gi|109714505|emb|CAJ99513.1| methyltransferase fragment 2 [Helicobacter acinonychis str. Sheeba]
          Length = 186

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 15/77 (19%)

Query: 207 QKPEALLSRILVSS-TKPGDIILDPFFGSGTSGAVAKKL------RRSFIGI------EM 253
            KP  L+  +L    T   DIILD F GSGT+G    +L       R FI        EM
Sbjct: 31  PKPVTLIINLLKMIKTDENDIILDFFAGSGTTGHAVLELNRQDGGNRQFILATNNEITEM 90

Query: 254 KQD--YIDIATKRIASV 268
             +    D+ TKR+  V
Sbjct: 91  NPNGIAYDVTTKRLKRV 107


>gi|282882842|ref|ZP_06291447.1| DNA methylase N-4/N-6 [Peptoniphilus lacrimalis 315-B]
 gi|300814098|ref|ZP_07094381.1| methyltransferase domain protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|281297253|gb|EFA89744.1| DNA methylase N-4/N-6 [Peptoniphilus lacrimalis 315-B]
 gi|300511755|gb|EFK38972.1| methyltransferase domain protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 248

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 9/94 (9%)

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
            +  N +++M + W  P          K      P      +   I++  +K  D+ILD 
Sbjct: 8   WEPENFELEMTTHWSFPERGDWATHDAKWRGNWSPY-----IPRNIILRYSKEKDLILDQ 62

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           F G GT+   AK L+R+ IG+++     D+A  R
Sbjct: 63  FAGGGTTLVEAKLLKRNIIGLDVN----DVALNR 92



 Score = 40.7 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 48/138 (34%), Gaps = 21/138 (15%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           KG++ + L+ +   S+DLI   PPY N+    +  + D S +               +  
Sbjct: 112 KGDARN-LDFISDNSIDLICTHPPYANIIKYSENIKEDLSQLK-----------INDFLD 159

Query: 84  FTRAWLLACRRVLKPNGTL-WVIGSYHNI-------FRIGTMLQNLNFWILNDIVWRKSN 135
             +       RVLK +     ++G            F +  + +N  F +   I+  + N
Sbjct: 160 EMKKVASESYRVLKKDKFCAVLMGDTRKNGHMIPLSFYVMQVFENAGFKMKEMIIKEQHN 219

Query: 136 PMPNFRGRRFQNAHETLI 153
                  +     +  L+
Sbjct: 220 CRATGFWKTNSIKYNFLL 237


>gi|270263298|ref|ZP_06191568.1| ribosomal protein L11 methyltransferase [Serratia odorifera 4Rx13]
 gi|270042986|gb|EFA16080.1| ribosomal protein L11 methyltransferase [Serratia odorifera 4Rx13]
          Length = 293

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P       + +     G   HPT    AL  + 
Sbjct: 95  WEREWMDNFHPMRFGERLWICPSWRDVPDPDAVNVMLDPGLAFGTGTHPTT---ALCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  I+D   GSG     A KL     IGI++    I  +     + Q  G  E
Sbjct: 152 LDGLDLTGKTIIDFGCGSGILAIAALKLGAERAIGIDIDPQAIQASRD---NAQRNGVSE 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L   + +P      +V   ++
Sbjct: 209 RLELYLPKDQPADLLADVVVANIL 232


>gi|300863900|ref|ZP_07108818.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300338086|emb|CBN53964.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 240

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 204 HPTQKPEALLSRILVSST-KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +P      L+  ++         +++DPF G GT+   AK+   + IGIE   
Sbjct: 49  YPAGFSYKLVEELISDFNLNSKSLVIDPFAGCGTTAVTAKQNGINSIGIEAHP 101


>gi|220933553|ref|YP_002512452.1| ribosomal protein L11 methyltransferase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219994863|gb|ACL71465.1| ribosomal protein L11 methyltransferase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 290

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 54/164 (32%), Gaps = 21/164 (12%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  ++  ++       + + +  P   G   L +     G   HPT    AL    
Sbjct: 92  WVRAWMDDFRPMRFGERLWIVPTGYEPPDPQGVNLLLDPGLAFGTGTHPTT---ALCLEW 148

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI----------DIATKRI 265
           L          +D   GSG     A +L  R  IG+++    +           IA  R+
Sbjct: 149 LDKHPPADATAIDYGCGSGVLAIAALRLGARHCIGVDLDPQALVATRDNARRNGIADDRL 208

Query: 266 ASVQPLG---NIELTVLTGKRTEPRVAFNLLVERGLIQPGQILT 306
               P G        V+    + P V    ++  GL+ PG  L 
Sbjct: 209 PVYLPEGFAAEPADLVMANILSGPLVELAPML-SGLVHPGGRLI 251


>gi|159030772|emb|CAO88450.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 422

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 28/51 (54%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           +P +    ++   L + TK  D I+DPF GSGT G  AK  +R+ +  ++ 
Sbjct: 44  YPAKFIPQVVRFCLDNYTKKDDWIIDPFAGSGTVGLEAKLCQRNAVLTDLN 94


>gi|17546630|ref|NP_520032.1| DNA-methyltransferase [Ralstonia solanacearum GMI1000]
 gi|17428929|emb|CAD15613.1| putative dna-methyltransferase protein [Ralstonia solanacearum
           GMI1000]
          Length = 119

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 6/111 (5%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           +  G+ +   +   K    +KP  L +R ++     G ++ DPF GS      AK+ R  
Sbjct: 10  LWWGNGQTDRRCLPKRDMAEKPIGL-AREVMYLVTTGSVVCDPFAGSRALLVAAKEARHQ 68

Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNIELTVLT--GKRT---EPRVAFNLL 293
           ++G E+    +DIA  R+     +   + +      KR+    PR+    L
Sbjct: 69  WMGCELWLVNLDIAMARVEPALLVTASQRSEFKKIHKRSHSRFPRLPLMAL 119


>gi|325578742|ref|ZP_08148789.1| N6-adenine-specific DNA methytransferase [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159566|gb|EGC71698.1| N6-adenine-specific DNA methytransferase [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 711

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 40/109 (36%), Gaps = 20/109 (18%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N I   + K+I+ + +  LEK   +  DLIF DPP              S    + DSWD
Sbjct: 592 NDIEGKQHKLIQADCLQWLEKC-DRQFDLIFVDPP------------TFSNSKRMEDSWD 638

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                          +   +R+L+PNGT+    +          L  L 
Sbjct: 639 VQRDHI-------KLMRNLKRILRPNGTIVFSNNKRGFKMDFETLDELG 680


>gi|301168774|emb|CBW28365.1| predicted methyltransferase [Haemophilus influenzae 10810]
          Length = 711

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 39/109 (35%), Gaps = 20/109 (18%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N I   + K+I+ + +  LEK   +  DLIF DPP              S    + +SWD
Sbjct: 593 NDIEGKQHKLIQADCLQWLEKC-DRQFDLIFVDPP------------TFSNSKRMEESWD 639

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                          +   +RVL  NGT+    +          L+ L 
Sbjct: 640 VQRDH-------VKLISNLKRVLSNNGTIVFSNNKRGFKMNLVALEELG 681


>gi|54020146|ref|YP_115842.1| site-specific DNA-methyltransferase (adenine-specific) [Mycoplasma
           hyopneumoniae 232]
 gi|53987319|gb|AAV27520.1| site-specific DNA-methyltransferase (adenine-specific) [Mycoplasma
           hyopneumoniae 232]
          Length = 367

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 21/49 (42%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           + + +    KP  L+  ++         ILD F GSGT+G     L R 
Sbjct: 200 NSKNIFDFPKPIELIKYLINIHPNKNAKILDFFAGSGTTGHAVWNLNRQ 248


>gi|312601270|gb|ADQ90525.1| Site-specific DNA-methyltransferase [Mycoplasma hyopneumoniae 168]
          Length = 367

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 21/49 (42%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           + + +    KP  L+  ++         ILD F GSGT+G     L R 
Sbjct: 200 NSKNIFDFPKPIELIKYLINIHPNKNAKILDFFAGSGTTGHAVWNLNRQ 248


>gi|148658099|ref|YP_001278304.1| hypothetical protein RoseRS_4009 [Roseiflexus sp. RS-1]
 gi|148570209|gb|ABQ92354.1| hypothetical protein RoseRS_4009 [Roseiflexus sp. RS-1]
          Length = 512

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
                    L R L         +LDPF G GT+   + +   + IG E+   +  +A +
Sbjct: 40  FSADFVVDALRRYLPDGAGRNTCVLDPFAGVGTTLVESIRHGHNAIGFEINP-FAALAAR 98



 Score = 43.4 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY 49
           K+I  +S  V   LP  S+D++   PPY
Sbjct: 256 KVINDDSRQVRHILPDSSIDIVITSPPY 283


>gi|238797913|ref|ZP_04641404.1| Ribosomal protein L11 methyltransferase [Yersinia mollaretii ATCC
           43969]
 gi|238718218|gb|EEQ10043.1| Ribosomal protein L11 methyltransferase [Yersinia mollaretii ATCC
           43969]
          Length = 296

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 45/131 (34%), Gaps = 10/131 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    AL  + 
Sbjct: 95  WEREWMDNFHPMRFGERLWICPSWRDVPDPTAVNVMLDPGLAFGTGTHPTT---ALCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG     A KL     IGI++    I  +     + Q  G  E
Sbjct: 152 LDGLDLVGKTVIDFGCGSGILAIAALKLGAAHAIGIDIDPQAIQASRD---NAQRNGVSE 208

Query: 276 LTVLTGKRTEP 286
              L   + +P
Sbjct: 209 RLALYLAKDQP 219


>gi|307129032|ref|YP_003881048.1| methylase for 50S ribosomal subunit protein L11 [Dickeya dadantii
           3937]
 gi|306526561|gb|ADM96491.1| methylase for 50S ribosomal subunit protein L11 [Dickeya dadantii
           3937]
          Length = 295

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 50/144 (34%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  S    + +     G   HPT    +L  + 
Sbjct: 95  WEREWMENFHPMQFGKRLWICPSWREVPDPSAVNVMLDPGLAFGTGTHPTT---SLCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG     A KL     IGI++    I  +     + Q  G  E
Sbjct: 152 LDGLDLDGKTVIDFGCGSGILAIAALKLGAAHAIGIDIDPQAIQASRD---NAQRNGVSE 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L   + +P+     +V   ++
Sbjct: 209 RLELYLPKDQPKDLSADVVVANIL 232


>gi|261867502|ref|YP_003255424.1| 23S rRNA m(2)G2445 methyltransferase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412834|gb|ACX82205.1| 23S rRNA m(2)G2445 methyltransferase [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 715

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 20/109 (18%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N I   + K+I+ + +  LEK   +  DLIF DPP              S    + DSWD
Sbjct: 597 NDIEGKQHKLIQADCLQWLEKC-DRQFDLIFVDPP------------TFSNSKRMEDSWD 643

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                          +   +R+L+PNGT+    +          L+ L 
Sbjct: 644 VQRDHI-------KLMTNLKRILRPNGTIVFSNNKRGFKMDFVGLEALG 685


>gi|124486021|ref|YP_001030637.1| hypothetical protein Mlab_1201 [Methanocorpusculum labreanum Z]
 gi|124363562|gb|ABN07370.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methanocorpusculum labreanum Z]
          Length = 636

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 67/210 (31%), Gaps = 28/210 (13%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDH-- 62
            + E   +    ++  I+G+++ VL+ L       + +I+ DPPYN   N  +Y+     
Sbjct: 84  YVPEESKNPDSTENLYIEGDNLEVLKLLQNSYVGKIKMIYIDPPYNTG-NDFVYKDHFAV 142

Query: 63  SLVDAVTDSWDKFSSFEAY--------------DAFTRAWLLACRRVLKPNGTLWVIGSY 108
           S  +      D  +  E Y               +     L   + +L+ +G +++    
Sbjct: 143 SAEENAKAEGDISAEGERYAVNPKTSGKYHANWLSMMYPRLRLAKNLLREDGIMFISIDD 202

Query: 109 HNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
           + +  +  +          +I    +        +++  +++   ++        Y  N 
Sbjct: 203 NEVGNLREICD--------EIFGDNNFLANLIWEKKYTRSNDATFFSDNHDHILCYCRNV 254

Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNK 198
           +  K          D          +   K
Sbjct: 255 ECFKIGRLPRTEEMDVAYKNPDNHPKGLWK 284



 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 27/111 (24%)

Query: 185 LIPICSG------SERLRNKDGEKLHPTQKPEALLSRI-LVSSTKPGDIILDPFFGSGTS 237
           +IP  +G       E L++   + +    KP  L+  +  +++     +ILD F GS T+
Sbjct: 363 IIPYKTGGHNHESVEELKDIFIKNIFTNPKPTRLIRHLATIANLNHESLILDFFSGSSTT 422

Query: 238 GAVAKKLR------RSFIGI-------EMKQDY-------IDIATKRIASV 268
                +L       R FI +       E  + Y        DI  +RI   
Sbjct: 423 AHAVMQLNAEDGGTRKFIMVQLPEACDEKSEAYKAGYKTICDIGKERIRRA 473


>gi|146295007|ref|YP_001185431.1| putative DNA modification methylase [Shewanella putrefaciens CN-32]
 gi|145566697|gb|ABP77632.1| putative DNA modification methylase [Shewanella putrefaciens CN-32]
          Length = 345

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%)

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            R L    K   +I+DPF G GTS   A+KL     GI+       IA  ++AS
Sbjct: 1   MRHLAKFKKEDPVIIDPFCGRGTSMFAARKLGLKAWGIDSSPVATAIARAKLAS 54


>gi|257868440|ref|ZP_05648093.1| predicted protein [Enterococcus gallinarum EG2]
 gi|257802604|gb|EEV31426.1| predicted protein [Enterococcus gallinarum EG2]
          Length = 216

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 48/134 (35%), Gaps = 17/134 (12%)

Query: 128 DIVWRKSNPMPNFRGRRFQNA----------HETLIWASPSPKAKGYTFNYDALKAANED 177
           D ++ K   + +F  RR  ++          HE ++  S SP      + +         
Sbjct: 14  DSIFGKDKFVCSFVWRRRNHSELNEENISVEHEYILCYSKSP-KYNVNYKFSTWIDTIST 72

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQ------KPEALLSRILVSSTKPGDIILDPF 231
              R D    + S  +    K    L   +      KP  LL  +     + GD ILD F
Sbjct: 73  NSEREDEFYELESMYQNEARKYINDLFNKEVVTNYPKPVTLLEEVFSIFLRDGDKILDIF 132

Query: 232 FGSGTSGAVAKKLR 245
            GSGT+G    KL 
Sbjct: 133 GGSGTTGEACMKLN 146


>gi|124004762|ref|ZP_01689606.1| DNA methylase, putative [Microscilla marina ATCC 23134]
 gi|123989885|gb|EAY29414.1| DNA methylase, putative [Microscilla marina ATCC 23134]
          Length = 371

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +    P      ++   +K GD ILDPF G  TS      L R  +GIE+  
Sbjct: 26  YYAMFPVDFAFDVINKYSKRGDHILDPFAGRSTSIYAGGALGRHGLGIEINP 77


>gi|304372978|ref|YP_003856187.1| Putative type III restriction-modification system: methylase
           [Mycoplasma hyorhinis HUB-1]
 gi|304309169|gb|ADM21649.1| Putative type III restriction-modification system: methylase
           [Mycoplasma hyorhinis HUB-1]
          Length = 367

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 9/84 (10%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI-ILDPFFGSGTSGAVAKKLR---- 245
           GS+ + +   +K+    KP  L+  ++  ++   DI ILD F GSGT+     +L     
Sbjct: 197 GSKEMTSIFKDKMFDYPKPVELVKYLIKMASSKKDIRILDFFAGSGTTAQAVLELNKEDG 256

Query: 246 --RSFIGIEMKQDYI--DIATKRI 265
             RS+I +   ++ I  ++  +R+
Sbjct: 257 GTRSYILVTNNENNIGQNVTYERL 280


>gi|167854908|ref|ZP_02477684.1| ribosomal protein L11 methyltransferase [Haemophilus parasuis
           29755]
 gi|167853975|gb|EDS25213.1| ribosomal protein L11 methyltransferase [Haemophilus parasuis
           29755]
          Length = 294

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 55/167 (32%), Gaps = 12/167 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   IP  +    + +     G   HPT    AL    
Sbjct: 95  WEREWMDNFHPMQFGKRLWICPSWREIPDPNAVNVMLDPGLAFGTGTHPTT---ALCLAW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S       ++D   GSG     A KL  +  IGI++    I  +     + +  G  +
Sbjct: 152 LDSLDLTDKTVIDFGCGSGILAIAALKLGAKKAIGIDIDPQAILASQN---NAEVNGVAD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
              L   + +P+     +V   ++     L      I   V   G L
Sbjct: 209 RLQLFLTKDQPQNLIADVVIANVL--AGPLKELAPQIITLVKPQGNL 253


>gi|329297974|ref|ZP_08255310.1| 23S rRNA m(2)G2445 methyltransferase [Plautia stali symbiont]
          Length = 705

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 48/140 (34%), Gaps = 22/140 (15%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++++ + +S L +   +  DLIF DPP         +     + D   
Sbjct: 580 NLRLNGLTGRQHRLMQADCLSWLRE-SDEQFDLIFIDPP--------TFSNSKRMEDDFD 630

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
              D               L   +R+L+  GT+    +          LQ L   +   +
Sbjct: 631 VQRDHLM-----------LLQNLKRMLRRGGTIMFSNNKRGFKMDLDGLQRLG--LQAQV 677

Query: 130 VWRKSNPMPNFRGRRFQNAH 149
           + +K+      R R+  N  
Sbjct: 678 ITQKTLSQDFARNRQIHNCW 697


>gi|293603856|ref|ZP_06686271.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292817693|gb|EFF76759.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 554

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 44/117 (37%), Gaps = 17/117 (14%)

Query: 20  KDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQ----LNGQLYRPDHSLVDAVTDSW 72
           +D +I+G+++ VL+ L         L++ DPPYN       N      +   + A     
Sbjct: 92  RDVLIEGDNLQVLKLLQNGYAGQAKLVYIDPPYNTGDTFTYNDDFSVSETEYLKATGQVD 151

Query: 73  DKFSSFEA----------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
           ++ ++             +       L+A R +L+ +G        + +  +  +L 
Sbjct: 152 EQGATVAKKEVKGRKHAPWLTMMFPRLVAARSLLRRDGVFLASIDNNEVHHLRLLLD 208



 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 90/275 (32%), Gaps = 42/275 (15%)

Query: 56  QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
            +Y  +  L+DA  + +D   +        R W         P G      S++N    G
Sbjct: 266 DVYAKEKELLDAHGEDFDAAKTA------LREWFERL-----PEGNPAKQHSHYNFIDAG 314

Query: 116 TMLQNLN---FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS---PSPKAKGYTFNYD 169
            +  + N        ++++      P   G R++ A    +        P  +       
Sbjct: 315 GVWTSDNSSSPNYRENLIYDFKGYAPPENGWRYEPATMEELDRKGKLIYPTGRATRIRIK 374

Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
                 E     S +       S  L    G  +    K   +L+R++ + T  GD+++D
Sbjct: 375 KYLHEQEMWAPASTFYRDRSGASSALETLMGAGVFDDPKATDVLARLIAALTADGDLVVD 434

Query: 230 PFFGSGTSGAVAKKLR------RSFIGIE---------------MKQDY---IDIATKRI 265
            F GSG++G    +        R +I ++               + + Y    +I  +R+
Sbjct: 435 FFAGSGSTGQAVWEQNARDGKTRHWILVQRPEIPDVNTETGKKALAEGYSSIFEITAERL 494

Query: 266 ASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
                  +     L G R       NL +E  +++
Sbjct: 495 RRAAKQLDPNDQTL-GFRVFRAQGTNLHIESAVVR 528


>gi|322515646|ref|ZP_08068624.1| ribosomal protein L11 methyltransferase [Actinobacillus ureae ATCC
           25976]
 gi|322118297|gb|EFX90580.1| ribosomal protein L11 methyltransferase [Actinobacillus ureae ATCC
           25976]
          Length = 293

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 59/167 (35%), Gaps = 12/167 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    AL  + 
Sbjct: 95  WEREWMDNFHPMQFGKRLWICPSWREVPDPNAVNVMLDPGLAFGTGTHPTT---ALCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG     A KL  +  IGI++    I  +T    + +  G  +
Sbjct: 152 LDSLDLAGKTVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAILASTN---NAEANGVAD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
              L   + +P+     +V   ++     L     NI   V   G L
Sbjct: 209 RLQLFLAKDQPQDLQADVVVANIL--AGPLKELAPNIITLVKPQGDL 253


>gi|332300180|ref|YP_004442101.1| DNA methylase N-4/N-6 domain protein [Porphyromonas asaccharolytica
           DSM 20707]
 gi|332177243|gb|AEE12933.1| DNA methylase N-4/N-6 domain protein [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 707

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 85/274 (31%), Gaps = 26/274 (9%)

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW-ILNDI 129
            W  F     Y     +        +  +G       ++   +  T+L+ +    +++  
Sbjct: 285 EWVNFRKHGGYREDAPSMYYPIYVKVDGSGFRIPKMKWNEKDKEYTILEPVEEDELISWP 344

Query: 130 VWRKSNPMPNFRG--RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
           +  +        G  R   ++ E  +          Y  +    +               
Sbjct: 345 IDDQGRARRWKWGLERALSSSSEMSVRRDRKGIPSVYIKSRMNEEGMLPLTVWDDKRYSS 404

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-- 245
              G+  L+N  G       K    +   L   + P  I+LD F GS T+     +L   
Sbjct: 405 TEYGANLLKNLLGTNCFDYPKSLYAVIDSLRIGSDPDSIVLDFFSGSATTAHAVMQLNAE 464

Query: 246 ----RSFIGIEMKQD-----------YI---DIATKRI--ASVQPLGNIELTVLTGKRTE 285
               R FI +++ ++           Y    DIA +RI  A+V    ++E   +  +   
Sbjct: 465 DGGHRKFICVQLAEETPDGSEARKAGYKTIPDIAKERIRRAAVAIRNDLETEKIRAQAKL 524

Query: 286 PRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            +VA    V++   +    L +      A    D
Sbjct: 525 AKVAMGEDVDKDP-ELWDNLYDDAERNQAQERLD 557



 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 54/151 (35%), Gaps = 19/151 (12%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           I+G+++SVL+ L       V +I+ DPPYN   N       ++      +S   +S  E 
Sbjct: 104 IEGDNLSVLKLLQRSYVGKVKMIYIDPPYNTGKNLIYKNRFYTDTKEYLESTGVYSDNEG 163

Query: 81  YD--------AFTRAWLLACR-------RVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFW 124
           +          F   W             +L  +G + +      +  + +++  +    
Sbjct: 164 WLYCNKSTNGRFHSDWCSMIYSRLLLSRSLLSEDGIICLTIDDSEVQNVISIMNEIFGES 223

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
                +  K+NP      +    AHE  ++ 
Sbjct: 224 NHLATIVVKNNPSGRSTTKGVSIAHEYALFY 254


>gi|238782960|ref|ZP_04626988.1| Ribosomal protein L11 methyltransferase [Yersinia bercovieri ATCC
           43970]
 gi|238716163|gb|EEQ08147.1| Ribosomal protein L11 methyltransferase [Yersinia bercovieri ATCC
           43970]
          Length = 289

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 45/131 (34%), Gaps = 10/131 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    AL  + 
Sbjct: 90  WEREWMDNFHPMRFGERLWICPSWRDVPDPTAVNVMLDPGLAFGTGTHPTT---ALCLQW 146

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG     A KL     IGI++    I  +     + Q  G  E
Sbjct: 147 LDGLDLAGKTVIDFGCGSGILAIAALKLGATHAIGIDIDPQAIQASRD---NAQRNGVSE 203

Query: 276 LTVLTGKRTEP 286
              L   + +P
Sbjct: 204 RLALYLAKDQP 214


>gi|271498832|ref|YP_003331857.1| ribosomal protein L11 methyltransferase [Dickeya dadantii Ech586]
 gi|270342387|gb|ACZ75152.1| ribosomal protein L11 methyltransferase [Dickeya dadantii Ech586]
          Length = 295

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 65/194 (33%), Gaps = 21/194 (10%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    +L  + 
Sbjct: 95  WEREWMENFHPMQFGKRLWICPSWRDVPDPNAVNVMLDPGLAFGTGTHPTT---SLCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG     A KL     IGI++    I  +     + Q  G  E
Sbjct: 152 LDGLDLAGKTVIDFGCGSGILAIAALKLGAAHAIGIDIDPQAIQASRD---NAQRNGVSE 208

Query: 276 LTVLTGKRTEPR------VAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELG 329
              L   + +P+      V  N+L   G ++    L +        +   G L S  +  
Sbjct: 209 RLELYLPKDQPKDLSADVVVANIL--AGPLRELAPLISVLPKAGGHLGLSGILASQAQ-- 264

Query: 330 SIHRVG-AKVSGSE 342
           S+ +   A+     
Sbjct: 265 SVAQAYEAQFQLDP 278


>gi|254173370|ref|ZP_04880043.1| SAM-dependent methyltransferase [Thermococcus sp. AM4]
 gi|214032779|gb|EEB73608.1| SAM-dependent methyltransferase [Thermococcus sp. AM4]
          Length = 285

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 27/85 (31%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + ++I G++  V+++   +S D++  DPP    L GQLY                     
Sbjct: 177 RIQVIHGDAFEVVKRFKDESFDVVIHDPP-RFSLAGQLY--------------------- 214

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWV 104
                +  +     RVLKP G L+ 
Sbjct: 215 -----SEEFYRELFRVLKPGGRLFH 234


>gi|145628992|ref|ZP_01784791.1| possible SAM-dependent methyltransferase [Haemophilus influenzae
           22.1-21]
 gi|144978495|gb|EDJ88218.1| possible SAM-dependent methyltransferase [Haemophilus influenzae
           22.1-21]
          Length = 711

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 39/109 (35%), Gaps = 20/109 (18%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N I   + K+I+ + +  LEK   +  DLIF DPP              S    + +SWD
Sbjct: 593 NDIEGKQHKLIQADCLQWLEKC-DRQFDLIFVDPP------------TFSNSKRMEESWD 639

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                          +   +RVL  NGT+    +          L+ L 
Sbjct: 640 VQRDH-------VKLMSNLKRVLSNNGTIVFSNNKRGFKMNLVALEELG 681


>gi|148827258|ref|YP_001292011.1| 23S rRNA m(2)G2445 methyltransferase [Haemophilus influenzae
           PittGG]
 gi|229560166|sp|A5UFS2|RLML_HAEIG RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|148718500|gb|ABQ99627.1| predicted methyltransferase [Haemophilus influenzae PittGG]
          Length = 711

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 39/109 (35%), Gaps = 20/109 (18%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N I   + K+I+ + +  LEK   +  DLIF DPP              S    + +SWD
Sbjct: 593 NDIEGKQHKLIQADCLQWLEKC-DRQFDLIFVDPP------------TFSNSKRMEESWD 639

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                          +   +RVL  NGT+    +          L+ L 
Sbjct: 640 VQRDH-------VKLMSNLKRVLSNNGTIVFSNNKRGFKMNLVALEELG 681


>gi|148825609|ref|YP_001290362.1| 23S rRNA m(2)G2445 methyltransferase [Haemophilus influenzae
           PittEE]
 gi|229560165|sp|A5UB28|RLML_HAEIE RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|148715769|gb|ABQ97979.1| possible SAM-dependent methyltransferase [Haemophilus influenzae
           PittEE]
          Length = 711

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 39/109 (35%), Gaps = 20/109 (18%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N I   + K+I+ + +  LEK   +  DLIF DPP              S    + +SWD
Sbjct: 593 NDIEGKQHKLIQADCLQWLEKC-DRQFDLIFVDPP------------TFSNSKRMEESWD 639

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                          +   +RVL  NGT+    +          L+ L 
Sbjct: 640 VQRDH-------VKLMSNLKRVLSNNGTIVFSNNKRGFKMNLVALEELG 681


>gi|145639994|ref|ZP_01795592.1| predicted methyltransferase [Haemophilus influenzae PittII]
 gi|145270881|gb|EDK10800.1| predicted methyltransferase [Haemophilus influenzae PittII]
 gi|309750465|gb|ADO80449.1| 23S rRNA mG2445 methyltransferase, SAM-dependent [Haemophilus
           influenzae R2866]
          Length = 711

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 39/109 (35%), Gaps = 20/109 (18%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N I   + K+I+ + +  LEK   +  DLIF DPP              S    + +SWD
Sbjct: 593 NDIEGKQHKLIQADCLQWLEKC-DRQFDLIFVDPP------------TFSNSKRMEESWD 639

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                          +   +RVL  NGT+    +          L+ L 
Sbjct: 640 VQRDH-------VKLMSNLKRVLSNNGTIVFSNNKRGFKMNLVALEELG 681


>gi|166365488|ref|YP_001657761.1| hypothetical protein MAE_27470 [Microcystis aeruginosa NIES-843]
 gi|166087861|dbj|BAG02569.1| hypothetical protein MAE_27470 [Microcystis aeruginosa NIES-843]
          Length = 57

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 20/28 (71%)

Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNL 51
            GNS++++ +LP +SVDLI   PP+ L
Sbjct: 27 YLGNSLTLMGELPDESVDLICTSPPFAL 54


>gi|238758367|ref|ZP_04619545.1| Ribosomal protein L11 methyltransferase [Yersinia aldovae ATCC
           35236]
 gi|238703490|gb|EEP96029.1| Ribosomal protein L11 methyltransferase [Yersinia aldovae ATCC
           35236]
          Length = 293

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 45/131 (34%), Gaps = 10/131 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    AL  + 
Sbjct: 95  WEREWMDNFHPMRFGERLWICPSWRDVPDPTAVNVMLDPGLAFGTGTHPTT---ALCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG     A KL     IGI++    I  +     + Q  G  E
Sbjct: 152 LDGLDLAGKTVIDFGCGSGILAIAALKLGAAHAIGIDIDPQAIQASRD---NAQRNGVSE 208

Query: 276 LTVLTGKRTEP 286
              L   + +P
Sbjct: 209 RLALYLAKDQP 219


>gi|332163157|ref|YP_004299734.1| ribosomal protein L11 methyltransferase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318603959|emb|CBY25457.1| ribosomal protein L11 methyltransferase [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325667387|gb|ADZ44031.1| ribosomal protein L11 methyltransferase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330862842|emb|CBX72983.1| ribosomal protein L11 methyltransferase [Yersinia enterocolitica
           W22703]
          Length = 293

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 45/131 (34%), Gaps = 10/131 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    AL  + 
Sbjct: 95  WEREWMDNFHPMRFGERLWICPSWRDVPDPTAVNVMLDPGLAFGTGTHPTT---ALCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG     A KL     IGI++    I  +     + Q  G  E
Sbjct: 152 LDGLNLTGKTVIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRD---NAQRNGVSE 208

Query: 276 LTVLTGKRTEP 286
              L   + +P
Sbjct: 209 RLELYLAKDQP 219


>gi|317014762|gb|ADU82198.1| type III restriction-modification system: methylase [Helicobacter
           pylori Gambia94/24]
          Length = 475

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 17/103 (16%)

Query: 22  KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
            +IK  +   L  L     +++D I+ DPPYN Q N  +Y  +                 
Sbjct: 381 TLIKSENYQALNSLKNRYKEAIDCIYIDPPYNTQNNEFVYADNFKRSS------------ 428

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
             + A     L     +L   G ++V    +       ++  +
Sbjct: 429 --WLAMMENRLELAHALLSDKGVMFVSIDDNEQAYCKALMDEV 469


>gi|293391379|ref|ZP_06635713.1| N6-adenine-specific DNA methytransferase [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951913|gb|EFE02032.1| N6-adenine-specific DNA methytransferase [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 712

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 20/109 (18%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N I   + K+I+ + +  LEK   +  DLIF DPP              S    + DSWD
Sbjct: 594 NDIEGKQHKLIQADCLQWLEKC-DRQFDLIFVDPP------------TFSNSKRMEDSWD 640

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                          +   +R+L+PNGT+    +          L+ L 
Sbjct: 641 VQRDHI-------KLMTNLKRILRPNGTIVFSNNKRGFKMDFVGLEALG 682


>gi|320539410|ref|ZP_08039079.1| methylase for 50S ribosomal subunit protein L11 [Serratia
           symbiotica str. Tucson]
 gi|320030535|gb|EFW12545.1| methylase for 50S ribosomal subunit protein L11 [Serratia
           symbiotica str. Tucson]
          Length = 293

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++  +      S   +P       + +     G   HPT    AL  + 
Sbjct: 95  WEREWMDNFHPMRFGDRLWICPSWRDVPDPDAVNVILDPGLAFGTGTHPTT---ALCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG     A KL     IGI++    I  +     + Q  G  E
Sbjct: 152 LDGLNLAGKTVIDFGCGSGILAIAALKLGAERAIGIDIDPQAIQASRD---NAQRNGVSE 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L     +P      +V   ++
Sbjct: 209 RLALYLPNDQPAELLADVVVANIL 232


>gi|312874678|ref|ZP_07734701.1| conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b]
 gi|311089805|gb|EFQ48226.1| conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b]
          Length = 416

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 10/87 (11%)

Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD----IIL 228
             N   Q   D+     SG   +        +P      +  ++L   +K  +     +L
Sbjct: 7   ELNRYPQDYWDFKGTTKSGIHNIGK------YPATMVPDMQYQLLSVVSKHLNNKNITLL 60

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           DPF GSGT+  +A++L  + +GI++  
Sbjct: 61  DPFCGSGTTLVIAQELGINSVGIDINP 87


>gi|238754657|ref|ZP_04616010.1| Ribosomal protein L11 methyltransferase [Yersinia ruckeri ATCC
           29473]
 gi|238707116|gb|EEP99480.1| Ribosomal protein L11 methyltransferase [Yersinia ruckeri ATCC
           29473]
          Length = 317

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 45/131 (34%), Gaps = 10/131 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    +L  + 
Sbjct: 119 WEREWMDNFHPMRFGERLWICPSWRDVPDPTAVNVMLDPGLAFGTGTHPTT---SLCLQW 175

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  I+D   GSG     A KL     IGI++    I  +     + Q  G  E
Sbjct: 176 LDGLDLEGKTIIDFGCGSGILAIAALKLGASRAIGIDIDPQAIQASRD---NAQRNGVSE 232

Query: 276 LTVLTGKRTEP 286
              L   + +P
Sbjct: 233 RLELYLSKDQP 243


>gi|94152672|ref|YP_582074.1| hypothetical protein Rmet_6265 [Cupriavidus metallidurans CH34]
          Length = 80

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           P  +        ++PGD+++DPF G+  +G  A++L R +I  E    Y   A +
Sbjct: 3   PTDIPDFFTRFLSQPGDLVVDPFGGTIRTGLAAERLGRRWIATEWILQYARGAAE 57


>gi|229889503|sp|B6ELD3|RLML_ALISL RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
          Length = 705

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 22/140 (15%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N N N     + + ++ + +  L++   +  DLIF DPP         +     +     
Sbjct: 581 NMNTNDQTGTQHQFLQADCLQWLQQAEGE-FDLIFIDPP--------TFSNSKRMDQTFD 631

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
              D     E             +R+L+ +GT+    +  N       L        N  
Sbjct: 632 VQRDHIMLLE-----------NLKRMLRQDGTVVFSNNKRNFKMDEEALDKAGLQAKN-- 678

Query: 130 VWRKSNPMPNFRGRRFQNAH 149
           + +++ P+   R +   N  
Sbjct: 679 ISKQTLPLDFARNKHIHNCW 698


>gi|70607048|ref|YP_255918.1| RNA methylase [Sulfolobus acidocaldarius DSM 639]
 gi|68567696|gb|AAY80625.1| RNA methylase [Sulfolobus acidocaldarius DSM 639]
          Length = 301

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 27/47 (57%)

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           L+R++++ ++    +LDPF G+GT    A  L    IGI++ +  I 
Sbjct: 149 LARLMINLSRSRSNVLDPFVGTGTILIEANWLGLKCIGIDIDEQMIK 195


>gi|309972755|gb|ADO95956.1| 23S rRNA mG2445 methyltransferase, SAM-dependent [Haemophilus
           influenzae R2846]
          Length = 711

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 39/109 (35%), Gaps = 20/109 (18%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N I   + K+I+ + +  LEK   +  DLIF DPP              S    + +SWD
Sbjct: 593 NDIEGKQHKLIQADCLQWLEKC-DRQFDLIFVDPP------------TFSNSKRMEESWD 639

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                          +   +RVL  NGT+    +          L+ L 
Sbjct: 640 VQRDH-------VKLMSNLKRVLSNNGTIVFSNNKRGFKMNLVALEELG 681


>gi|326389941|ref|ZP_08211504.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325994001|gb|EGD52430.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 853

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 2/90 (2%)

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
            P+P    +   Y       +D      +   +  G              T+ P   + R
Sbjct: 37  CPNPFINEFIEKYGKPYVEEKDDYNCEPYTADVSEGKNDPIYNAHSYH--TKVPHKAIMR 94

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
            ++  TKPGDI+ D F G+G +G  A+   
Sbjct: 95  YILHYTKPGDIVFDGFCGTGMTGVAAQMCG 124



 Score = 38.4 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 10/74 (13%)

Query: 35  LPAKSVDLIFADPPY---------NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           + + S+D IF DPP+         N      L    ++  +AV +   K      Y    
Sbjct: 459 INSNSIDYIFTDPPFGDNLMYSELNFLWEAWLRVFTNNKTEAVINKIQK-KGLHEYQELM 517

Query: 86  RAWLLACRRVLKPN 99
                   R+LKP 
Sbjct: 518 EKAFSEMYRILKPG 531


>gi|307638041|gb|ADN80491.1| type II DNA Modification enzyme [Helicobacter pylori 908]
          Length = 343

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 17/110 (15%)

Query: 15  SIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
           S  E    +IK  +   L  L     +++D I+ DPPYN Q N  +Y  +          
Sbjct: 243 SENEINGTLIKSENYQALNSLKNRYKEAIDCIYIDPPYNTQNNEFVYADNFKRSS----- 297

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
                    + A     L     +L   G ++V    +       ++  +
Sbjct: 298 ---------WLAMMENRLELAHALLNDKGVMFVSIDDNEQAYCKALMDEV 338


>gi|319902498|ref|YP_004162226.1| Site-specific DNA-methyltransferase (adenine-specific) [Bacteroides
           helcogenes P 36-108]
 gi|319417529|gb|ADV44640.1| Site-specific DNA-methyltransferase (adenine-specific) [Bacteroides
           helcogenes P 36-108]
          Length = 1038

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 47/132 (35%), Gaps = 9/132 (6%)

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
           +++ +++I         G           +               GS+ L N  G K   
Sbjct: 678 RDSVDSIIDELYPVNNNGVIQIMRDKSKGSYKTVWDDKKYYANVYGSKLLNNIMGTKKFD 737

Query: 206 TQKPEALLSRILVSSTKP---GDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQD 256
             K    +S  +++  +      II+D F GSGT+G     L       R +I IEM + 
Sbjct: 738 FPKSLYTISDCILAVNEVQKGHSIIMDYFAGSGTTGHAVINLNRKDKGNRKYILIEMGEY 797

Query: 257 YIDIATKRIASV 268
           +  +   R+  V
Sbjct: 798 FDSVTKPRMTKV 809



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 53/149 (35%), Gaps = 24/149 (16%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLNGQLYRPDHSLV 65
           I+EN N +       I G++   +  L  K    +  I+ DPPYN + +  LY+ +    
Sbjct: 459 IDENTNGLM------INGDNYHAINLLQEKCKKRISCIYGDPPYNAKSSEILYKNNFK-- 510

Query: 66  DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
                         ++ A   + L     +    G +      +  F +  +L  L  + 
Sbjct: 511 ------------HSSWIAMMNSRLELVSPLKTERGAIVTAIDENEGFNLMKLLDTLFPYW 558

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
               V    NP    +G  F  +HE  I+
Sbjct: 559 SKTAVSVLHNPAGV-QGDNFSYSHEYAIF 586


>gi|229847239|ref|ZP_04467342.1| 23S rRNA m(2)G2445 methyltransferase [Haemophilus influenzae
           7P49H1]
 gi|229809782|gb|EEP45505.1| 23S rRNA m(2)G2445 methyltransferase [Haemophilus influenzae
           7P49H1]
          Length = 711

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 39/109 (35%), Gaps = 20/109 (18%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N I   + K+I+ + +  LEK   +  DLIF DPP              S    + +SWD
Sbjct: 593 NDIEGKQHKLIQADCLQWLEKC-DRQFDLIFVDPP------------TFSNSKRMEESWD 639

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                          +   +RVL  NGT+    +          L+ L 
Sbjct: 640 VQRDH-------VKLMRNLKRVLSNNGTIVFSNNKRGFKMNLVALEELG 681


>gi|119489594|ref|ZP_01622354.1| hypothetical protein L8106_08296 [Lyngbya sp. PCC 8106]
 gi|119454506|gb|EAW35654.1| hypothetical protein L8106_08296 [Lyngbya sp. PCC 8106]
          Length = 420

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 9/76 (11%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI---ASVQPLGNIELTVLTGKR 283
           ILDPF G GT+   A K      G E    +  I   ++     ++ L  IE  +L G +
Sbjct: 52  ILDPFAGCGTTLVEACKHGLRCFGYEPNPFFCRITQGKLPFKNCLESLETIEYILLNGFQ 111

Query: 284 TE------PRVAFNLL 293
                   P   F  L
Sbjct: 112 NSQEISILPDAPFKFL 127


>gi|260583261|ref|ZP_05851037.1| 23S rRNA m(2) methyltransferase [Haemophilus influenzae NT127]
 gi|260093668|gb|EEW77580.1| 23S rRNA m(2) methyltransferase [Haemophilus influenzae NT127]
          Length = 711

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 39/109 (35%), Gaps = 20/109 (18%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N I   + K+I+ + +  LEK   +  DLIF DPP              S    + +SWD
Sbjct: 593 NDIKGKQHKLIQADCLQWLEKC-DRQFDLIFVDPP------------TFSNSKRMEESWD 639

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                          +   +RVL  NGT+    +          L+ L 
Sbjct: 640 VQRDH-------VKLMSNLKRVLSNNGTIVFSNNKRGFKMNLVALEELG 681


>gi|209695054|ref|YP_002262983.1| 23S rRNA m(2)G2445 methyltransferase [Aliivibrio salmonicida
           LFI1238]
 gi|208009006|emb|CAQ79236.1| putative RNA methylase [Aliivibrio salmonicida LFI1238]
          Length = 718

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 22/140 (15%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N N N     + + ++ + +  L++   +  DLIF DPP         +     +     
Sbjct: 594 NMNTNDQTGTQHQFLQADCLQWLQQAEGE-FDLIFIDPP--------TFSNSKRMDQTFD 644

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
              D     E             +R+L+ +GT+    +  N       L        N  
Sbjct: 645 VQRDHIMLLE-----------NLKRMLRQDGTVVFSNNKRNFKMDEEALDKAGLQAKN-- 691

Query: 130 VWRKSNPMPNFRGRRFQNAH 149
           + +++ P+   R +   N  
Sbjct: 692 ISKQTLPLDFARNKHIHNCW 711


>gi|118575884|ref|YP_875627.1| DNA modification methylase [Cenarchaeum symbiosum A]
 gi|118194405|gb|ABK77323.1| DNA modification methylase [Cenarchaeum symbiosum A]
          Length = 464

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           KI  G+S  +L+ +P  S DL+   PPY    +        +    +  SW   S
Sbjct: 258 KIHAGDSRKLLDYVPRGSADLVITSPPYLNNYDYADRTRLETYFLGLYGSWRDIS 312



 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 204 HPTQKPEALL-SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
           +P      ++ ++I         +I+DPF GSGT+   A  L    IGIE
Sbjct: 70  YPAGYSFKMVGAKIREYGLDTESLIVDPFLGSGTTSLAAMNLGIDSIGIE 119


>gi|304372977|ref|YP_003856186.1| Site-specific DNA-methyltransferase, Adenine-specific [Mycoplasma
           hyorhinis HUB-1]
 gi|304309168|gb|ADM21648.1| Site-specific DNA-methyltransferase, Adenine-specific [Mycoplasma
           hyorhinis HUB-1]
          Length = 370

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 62/168 (36%), Gaps = 15/168 (8%)

Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
           S    +   T L+      +  I     N    +  +R Q  ++ + +   + + +    
Sbjct: 122 SARYTWSYKTYLEGKKQGFIQVI----KNNKGFWVAKRKQ--YQFVKFNPKTFEIETQVA 175

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
                   +++    S+      S +E       +      KP  L+  ++   +   D+
Sbjct: 176 GRRFNNVIDKNYNRLSNGFYTTKSANEITEVLFDKTAFNFAKPVGLMKYLINLFSDKKDM 235

Query: 227 -ILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYI--DIATKRI 265
            +LD F GSGT+G    +L       RSF+ +   ++ I  ++  +R+
Sbjct: 236 RVLDFFAGSGTTGQAVLELNKEDGGSRSFVLVTNNENNIGQNVTYERL 283


>gi|145636405|ref|ZP_01792073.1| predicted methyltransferase [Haemophilus influenzae PittHH]
 gi|145270230|gb|EDK10165.1| predicted methyltransferase [Haemophilus influenzae PittHH]
          Length = 711

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 39/109 (35%), Gaps = 20/109 (18%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N I   + K+I+ + +  LEK   +  DLIF DPP              S    + +SWD
Sbjct: 593 NDIEGKQHKLIQADCLQWLEKC-DRQFDLIFVDPP------------TFSNSKRMEESWD 639

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                          +   +RVL  NGT+    +          L+ L 
Sbjct: 640 VQRDH-------VKLMRNLKRVLSNNGTIVFSNNKRGFKMNLVALEELG 681


>gi|218246340|ref|YP_002371711.1| methyltransferase [Cyanothece sp. PCC 8801]
 gi|218166818|gb|ACK65555.1| methyltransferase [Cyanothece sp. PCC 8801]
          Length = 179

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 24/32 (75%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
           ++I+G+ I+VL+ L  +S D I+ DPPYN QL
Sbjct: 91  QVIRGDVINVLKTLAGQSFDRIYFDPPYNSQL 122


>gi|270118178|ref|YP_003329506.1| methyltransferase, type III restriction-modification system,
           truncated [Lactococcus lactis]
 gi|76574870|gb|ABA47341.1| methyltransferase, type III restriction-modification system,
           truncated [Lactococcus lactis]
          Length = 183

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 10/90 (11%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + +++G+++  L  L       +D+I+ DPPYN      +Y       D      D+F  
Sbjct: 92  NFLLEGDNLHSLHLLEKTHLGKIDIIYIDPPYNTGNKDFVYN------DDFVGKDDEFKH 145

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
            + + +F    L+  +++L PNG ++V   
Sbjct: 146 SK-WLSFMERRLIIAKKLLSPNGVIFVSID 174


>gi|294637766|ref|ZP_06716040.1| ribosomal protein L11 methyltransferase [Edwardsiella tarda ATCC
           23685]
 gi|291089058|gb|EFE21619.1| ribosomal protein L11 methyltransferase [Edwardsiella tarda ATCC
           23685]
          Length = 246

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 36/108 (33%), Gaps = 7/108 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   IP       + +     G   HPT    AL  + 
Sbjct: 95  WEREWMDNFHPMQFGRRLWICPSWREIPDPEAVNVMLDPGLAFGTGTHPTT---ALCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           L      G  ++D   GSG     A KL     IGI++    I  +  
Sbjct: 152 LDGLDLVGKTVIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRD 199


>gi|37681321|ref|NP_935930.1| ribosomal protein L11 methyltransferase [Vibrio vulnificus YJ016]
 gi|38605128|sp|P60094|PRMA_VIBVY RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|37200072|dbj|BAC95901.1| ribosomal protein L11 methylase [Vibrio vulnificus YJ016]
          Length = 295

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 54/168 (32%), Gaps = 12/168 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  +K         S   IP  +    + +     G   HPT    AL    
Sbjct: 96  WEREWMDNFHPMKFGQRLWICPSWRDIPDPTAVNVMLDPGLAFGTGTHPTT---ALCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG     A KL     IGI++    +  +     + Q  G  +
Sbjct: 153 LEGLDLSGKTVIDFGCGSGILAIAAIKLGAEKVIGIDIDPQALLASKD---NAQRNGVAD 209

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
              +   + +P      +V   ++     L      I   V  +G L 
Sbjct: 210 QLDVYLPQDQPEGLLADVVVANILAA--PLRELSSIIKGLVKPNGQLA 255


>gi|261250466|ref|ZP_05943041.1| ribosomal protein L11 methyltransferase [Vibrio orientalis CIP
           102891]
 gi|260939035|gb|EEX95022.1| ribosomal protein L11 methyltransferase [Vibrio orientalis CIP
           102891]
          Length = 295

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 55/168 (32%), Gaps = 12/168 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  +K         S   IP       + +     G   HPT    AL    
Sbjct: 96  WEREWMDNFHPMKFGERLWICPSWREIPEPDAVNVMLDPGLAFGTGTHPTT---ALCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG     A KL     IGI++    +  +     + +  G  +
Sbjct: 153 LEGLDLTGKTVIDFGCGSGILAIAAIKLGAEKVIGIDIDPQALLASKD---NAERNGVAD 209

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
              +   + +P      +V   ++     L +    I + V  +G L 
Sbjct: 210 QLEVFLPQDQPEGLIADVVVANIL--AGPLRDLSSIIKSLVKPNGELA 255


>gi|294505249|ref|YP_003569311.1| ribosomal protein L11 methyltransferase [Yersinia pestis Z176003]
 gi|262367310|gb|ACY63867.1| ribosomal protein L11 methyltransferase [Yersinia pestis D182038]
 gi|294355708|gb|ADE66049.1| ribosomal protein L11 methyltransferase [Yersinia pestis Z176003]
          Length = 266

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 50/144 (34%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    AL  + 
Sbjct: 68  WEREWMDNFHPMRFGERLWICPSWRDVPDPTAVNVMLDPGLAFGTGTHPTT---ALCLQW 124

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG     A KL     IGI++    I  +     + Q  G  E
Sbjct: 125 LDSLDLNGKTLIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRD---NAQRNGVSE 181

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L   + +P      +V   ++
Sbjct: 182 RLELYLAKDQPAELSADVVVANIL 205


>gi|162420605|ref|YP_001605751.1| ribosomal protein L11 methyltransferase [Yersinia pestis Angola]
 gi|165937513|ref|ZP_02226076.1| ribosomal protein L11 methyltransferase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|270488616|ref|ZP_06205690.1| ribosomal protein L11 methyltransferase [Yersinia pestis KIM D27]
 gi|21956886|gb|AAM83806.1|AE013621_6 methylase for 50S ribosomal subunit protein L11 [Yersinia pestis
           KIM 10]
 gi|45438490|gb|AAS64036.1| ribosomal protein L11 methyltransferase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|162353420|gb|ABX87368.1| ribosomal protein L11 methyltransferase [Yersinia pestis Angola]
 gi|165914618|gb|EDR33232.1| ribosomal protein L11 methyltransferase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|270337120|gb|EFA47897.1| ribosomal protein L11 methyltransferase [Yersinia pestis KIM D27]
          Length = 306

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 50/144 (34%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    AL  + 
Sbjct: 108 WEREWMDNFHPMRFGERLWICPSWRDVPDPTAVNVMLDPGLAFGTGTHPTT---ALCLQW 164

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG     A KL     IGI++    I  +     + Q  G  E
Sbjct: 165 LDSLDLNGKTLIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRD---NAQRNGVSE 221

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L   + +P      +V   ++
Sbjct: 222 RLELYLAKDQPAELSADVVVANIL 245


>gi|161760558|ref|YP_072057.2| ribosomal protein L11 methyltransferase [Yersinia
           pseudotuberculosis IP 32953]
 gi|186897061|ref|YP_001874173.1| ribosomal protein L11 methyltransferase [Yersinia
           pseudotuberculosis PB1/+]
 gi|60390350|sp|Q665E3|PRMA_YERPS RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|226710128|sp|B2K467|PRMA_YERPB RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|186700087|gb|ACC90716.1| ribosomal protein L11 methyltransferase [Yersinia
           pseudotuberculosis PB1/+]
          Length = 293

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 50/144 (34%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    AL  + 
Sbjct: 95  WEREWMDNFHPMRFGERLWICPSWRDVPDPTAVNVMLDPGLAFGTGTHPTT---ALCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG     A KL     IGI++    I  +     + Q  G  E
Sbjct: 152 LDSLDLNGKTLIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRD---NAQRNGVSE 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L   + +P      +V   ++
Sbjct: 209 RLELYLAKDQPAELSADVVVANIL 232


>gi|51591148|emb|CAH22813.1| ribosomal protein L11 methyltransferase [Yersinia
           pseudotuberculosis IP 32953]
          Length = 304

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 50/144 (34%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    AL  + 
Sbjct: 106 WEREWMDNFHPMRFGERLWICPSWRDVPDPTAVNVMLDPGLAFGTGTHPTT---ALCLQW 162

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG     A KL     IGI++    I  +     + Q  G  E
Sbjct: 163 LDSLDLNGKTLIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRD---NAQRNGVSE 219

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L   + +P      +V   ++
Sbjct: 220 RLELYLAKDQPAELSADVVVANIL 243


>gi|153949340|ref|YP_001399381.1| ribosomal protein L11 methyltransferase [Yersinia
           pseudotuberculosis IP 31758]
 gi|153997406|ref|ZP_02022506.1| ribosomal protein L11 methyltransferase [Yersinia pestis CA88-4125]
 gi|161484913|ref|NP_667555.2| ribosomal protein L11 methyltransferase [Yersinia pestis KIM 10]
 gi|161511288|ref|NP_995159.2| ribosomal protein L11 methyltransferase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|166011411|ref|ZP_02232309.1| ribosomal protein L11 methyltransferase [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|167401975|ref|ZP_02307458.1| ribosomal protein L11 methyltransferase [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|170022705|ref|YP_001719210.1| ribosomal protein L11 methyltransferase [Yersinia
           pseudotuberculosis YPIII]
 gi|218930666|ref|YP_002348541.1| ribosomal protein L11 methyltransferase [Yersinia pestis CO92]
 gi|229836800|ref|ZP_04456965.1| methylase for 50S ribosomal subunit protein L11 [Yersinia pestis
           Pestoides A]
 gi|229839301|ref|ZP_04459460.1| methylase for 50S ribosomal subunit protein L11 [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229899863|ref|ZP_04515004.1| methylase for 50S ribosomal subunit protein L11 [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229904174|ref|ZP_04519285.1| methylase for 50S ribosomal subunit protein L11 [Yersinia pestis
           Nepal516]
 gi|38605410|sp|Q8ZAX6|PRMA_YERPE RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|166989901|sp|A7FDQ3|PRMA_YERP3 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|226710129|sp|B1JKF2|PRMA_YERPY RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|115349277|emb|CAL22244.1| ribosomal protein L11 methyltransferase [Yersinia pestis CO92]
 gi|149289043|gb|EDM39123.1| ribosomal protein L11 methyltransferase [Yersinia pestis CA88-4125]
 gi|152960835|gb|ABS48296.1| ribosomal protein L11 methyltransferase [Yersinia
           pseudotuberculosis IP 31758]
 gi|165989795|gb|EDR42096.1| ribosomal protein L11 methyltransferase [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|167048561|gb|EDR59969.1| ribosomal protein L11 methyltransferase [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|169749239|gb|ACA66757.1| ribosomal protein L11 methyltransferase [Yersinia
           pseudotuberculosis YPIII]
 gi|229678292|gb|EEO74397.1| methylase for 50S ribosomal subunit protein L11 [Yersinia pestis
           Nepal516]
 gi|229687355|gb|EEO79430.1| methylase for 50S ribosomal subunit protein L11 [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229695667|gb|EEO85714.1| methylase for 50S ribosomal subunit protein L11 [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229705743|gb|EEO91752.1| methylase for 50S ribosomal subunit protein L11 [Yersinia pestis
           Pestoides A]
 gi|262363312|gb|ACY60033.1| ribosomal protein L11 methyltransferase [Yersinia pestis D106004]
 gi|320017180|gb|ADW00752.1| methylase for 50S ribosomal subunit protein L11 [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 293

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 50/144 (34%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    AL  + 
Sbjct: 95  WEREWMDNFHPMRFGERLWICPSWRDVPDPTAVNVMLDPGLAFGTGTHPTT---ALCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG     A KL     IGI++    I  +     + Q  G  E
Sbjct: 152 LDSLDLNGKTLIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRD---NAQRNGVSE 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L   + +P      +V   ++
Sbjct: 209 RLELYLAKDQPAELSADVVVANIL 232


>gi|108809659|ref|YP_653575.1| ribosomal protein L11 methyltransferase [Yersinia pestis Antiqua]
 gi|108813676|ref|YP_649443.1| ribosomal protein L11 methyltransferase [Yersinia pestis Nepal516]
 gi|145597578|ref|YP_001161654.1| ribosomal protein L11 methyltransferase [Yersinia pestis Pestoides
           F]
 gi|165927551|ref|ZP_02223383.1| ribosomal protein L11 methyltransferase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|166214163|ref|ZP_02240198.1| ribosomal protein L11 methyltransferase [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167420502|ref|ZP_02312255.1| ribosomal protein L11 methyltransferase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425493|ref|ZP_02317246.1| ribosomal protein L11 methyltransferase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167470297|ref|ZP_02335001.1| ribosomal protein L11 methyltransferase [Yersinia pestis FV-1]
 gi|108777324|gb|ABG19843.1| LSU ribosomal protein L11P methyltransferase [Yersinia pestis
           Nepal516]
 gi|108781572|gb|ABG15630.1| LSU ribosomal protein L11P methyltransferase [Yersinia pestis
           Antiqua]
 gi|145209274|gb|ABP38681.1| LSU ribosomal protein L11P methyltransferase [Yersinia pestis
           Pestoides F]
 gi|165920445|gb|EDR37722.1| ribosomal protein L11 methyltransferase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|166204650|gb|EDR49130.1| ribosomal protein L11 methyltransferase [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166961308|gb|EDR57329.1| ribosomal protein L11 methyltransferase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167055507|gb|EDR65300.1| ribosomal protein L11 methyltransferase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
          Length = 304

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 50/144 (34%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    AL  + 
Sbjct: 106 WEREWMDNFHPMRFGERLWICPSWRDVPDPTAVNVMLDPGLAFGTGTHPTT---ALCLQW 162

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG     A KL     IGI++    I  +     + Q  G  E
Sbjct: 163 LDSLDLNGKTLIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRD---NAQRNGVSE 219

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L   + +P      +V   ++
Sbjct: 220 RLELYLAKDQPAELSADVVVANIL 243


>gi|302384742|ref|YP_003820564.1| modification methylase [Clostridium saccharolyticum WM1]
 gi|302195370|gb|ADL02941.1| modification methylase [Clostridium saccharolyticum WM1]
          Length = 420

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 6/119 (5%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +  G+SI +++     S D+I   PPY        Y     L     D+ D        D
Sbjct: 223 LTCGDSIEIMKTYKPNSFDIICTSPPYGDNATTVTYGQFSILQLLWIDNNDFQYDSNCVD 282

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
            F++         +   G      +++    I + +  L+      I    ++    FR
Sbjct: 283 NFSK------IDSMSLGGAHSANNAFYYSPIISSYISQLSLHKQTKIKRFYTDYENAFR 335



 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 19/43 (44%)

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
           LDPF GSG +    + L     G+++      I+  ++    P
Sbjct: 58  LDPFHGSGVTLVEGQSLGLEVWGMDINPYAHIISLAKLEKYDP 100


>gi|154498712|ref|ZP_02037090.1| hypothetical protein BACCAP_02703 [Bacteroides capillosus ATCC
           29799]
 gi|150272252|gb|EDM99450.1| hypothetical protein BACCAP_02703 [Bacteroides capillosus ATCC
           29799]
          Length = 1073

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 52/174 (29%), Gaps = 12/174 (6%)

Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA----HETLIWASPSPKAK 162
              N   +  ++ N        I+   S          +++        +++  P     
Sbjct: 671 DTFNDSYLAEVIDNFKVQGYEAILPMSSKGEHFRWRWGYKSCVAGVKNGVLFCKPVRGGG 730

Query: 163 GYTFNY-DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
              + Y  A + A        +       G+  L N          K    +   ++   
Sbjct: 731 YAVYQYDFADEEATPKSLWYGERYDASSKGTNLLENIIPNNPFDYPKSLFTVEDNVIIGC 790

Query: 222 KPGDIILDPFFGSGTSGAVAKKL-------RRSFIGIEMKQDYIDIATKRIASV 268
              D +LD F GSGT+G     L        R +I +EM   +  +   R+  V
Sbjct: 791 NGDDTVLDYFAGSGTTGHAVLDLNRTIDGSNRKYILVEMGTYFDTVTHPRMKKV 844



 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 70/185 (37%), Gaps = 37/185 (20%)

Query: 3   QKNSLAINENQNSIFEWKDKI---------------IKGNSISVLEKLPAK---SVDLIF 44
           ++N   + + ++   ++K+++               I  ++   L+ L  +   +V LI+
Sbjct: 433 RQNQNLVVDTKHFSTDFKERLVASIDDLDQQMGGLMIHSDNYQALKFLQNQYASTVKLIY 492

Query: 45  ADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
            DPPYN   +  LY+  +                 ++ +   + L   RR L   G + V
Sbjct: 493 IDPPYNTDASKILYKNGY--------------EHSSWLSLMESRLAEGRRFLSDKGIIEV 538

Query: 105 IGSYHNIFRIGTMLQN---LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
               + +  + + + N   +   I N  +   +NP    +G   Q    T+I+A     A
Sbjct: 539 AIDDYELRYLNSCMDNVFGIGNAISNIAIL--TNPKGRDQGFIAQAHDYTVIYAKNKALA 596

Query: 162 KGYTF 166
           +   F
Sbjct: 597 ETNNF 601


>gi|157372654|ref|YP_001480643.1| 50S ribosomal protein L11 methyltransferase [Serratia
           proteamaculans 568]
 gi|166989900|sp|A8GK75|PRMA_SERP5 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|157324418|gb|ABV43515.1| ribosomal protein L11 methyltransferase [Serratia proteamaculans
           568]
          Length = 293

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P       + +     G   HPT    AL  + 
Sbjct: 95  WEREWMDNFHPMRFGQRLWICPSWRDVPDPDAVNVMLDPGLAFGTGTHPTT---ALCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  I+D   GSG     A KL     IGI++    I  +     + Q  G  E
Sbjct: 152 LDGLDLAGKTIIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRD---NAQRNGVSE 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L   + +P      +V   ++
Sbjct: 209 RLELYLPKDQPADLLADVVVANIL 232


>gi|307273968|ref|ZP_07555178.1| hypothetical protein HMPREF9514_02710 [Enterococcus faecalis
           TX0855]
 gi|306509276|gb|EFM78336.1| hypothetical protein HMPREF9514_02710 [Enterococcus faecalis
           TX0855]
          Length = 77

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           D +      KP  L+ RI+   + P  I+LD F GS T+     ++ 
Sbjct: 24  DDKAYFSYPKPVPLIKRIVELYSNPDSIVLDFFSGSATTAEAVMRMN 70


>gi|119946820|ref|YP_944500.1| methyltransferase of 50S ribosomal subunit protein L11
           [Psychromonas ingrahamii 37]
 gi|119865424|gb|ABM04901.1| LSU ribosomal protein L11P methyltransferase [Psychromonas
           ingrahamii 37]
          Length = 311

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 58/173 (33%), Gaps = 12/173 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +   +  +K         S   +P  +    + +     G   HPT    AL    
Sbjct: 110 WEREWMDKFHPMKFGQRLWICPSWKPVPDENAINVMLDPGLAFGTGTHPTT---ALCLTW 166

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S      +++D   GSG     A KL  +  IGI++    I  +     + Q     +
Sbjct: 167 LDSLDLQDKVVIDFGCGSGILAIAALKLGAKRVIGIDLDPQAITASRD---NAQRNNVSD 223

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTEL 328
              L      P   F  ++   ++     L     NI + V ++G+L     L
Sbjct: 224 QLELYLPADLPEGIFADVLVANIL--AGPLRELSTNIESLVKSNGSLALSGIL 274


>gi|329123876|ref|ZP_08252431.1| N6-adenine-specific DNA methytransferase [Haemophilus aegyptius
           ATCC 11116]
 gi|327468717|gb|EGF14195.1| N6-adenine-specific DNA methytransferase [Haemophilus aegyptius
           ATCC 11116]
          Length = 711

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 39/109 (35%), Gaps = 20/109 (18%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N I   + K+I+ + +  LEK   +  DLIF DPP              S    + +SWD
Sbjct: 593 NDIKGKQHKLIQADCLQWLEKC-DRQFDLIFVDPP------------TFSNSKRMEESWD 639

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                          +   +RVL  NGT+    +          L+ L 
Sbjct: 640 VQRDH-------VKLMRNLKRVLSNNGTIVFSNNKRGFKMNLVALEELG 681


>gi|218710862|ref|YP_002418483.1| ribosomal protein L11 methyltransferase [Vibrio splendidus LGP32]
 gi|254783323|sp|B7VM52|PRMA_VIBSL RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|218323881|emb|CAV20242.1| ribosomal protein L11 methyltransferase [Vibrio splendidus LGP32]
          Length = 295

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 55/168 (32%), Gaps = 12/168 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  +K         S   IP       + +     G   HPT    AL    
Sbjct: 96  WEREWMDNFHPMKFGERLWICPSWRDIPEPDAVNVMLDPGLAFGTGTHPTT---ALCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG     A KL     +GI++    +  +     + Q  G  E
Sbjct: 153 LEGLDLTGKTVIDFGCGSGILAIAAIKLGAAKVVGIDIDPQALLASKD---NAQRNGVAE 209

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
              +   + +P      +V   ++     L +  G I   V  +G L 
Sbjct: 210 QLEVFLPQDQPEGLLADVVVANIL--AGPLRDLSGIIKGLVKPNGVLA 255


>gi|115289081|gb|ABI85557.1| M.Hin1056ModP-5 [Haemophilus influenzae]
          Length = 422

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 71/214 (33%), Gaps = 21/214 (9%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       V LI+ DPPY        Y       D+    ++    
Sbjct: 223 NLIIKGNNLIALHSLAKQFKGKVKLIYIDPPY--------YFVKKKPQDSFG--YNTNFK 272

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNP 136
              +  F +  LL  + +L  +G + +         +  +L  +  F      +    N 
Sbjct: 273 LSTWLTFMKNRLLIAKELLTDDGIIVISIDDDGNAYLKILLDEIFGFENFIGNLPTIMNL 332

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
             N     F   HE  +  + +     +       +   ++ +M  DW        ++  
Sbjct: 333 KGNNDEYAFSGTHEYTLVFAKNKDKSTFY------EFPIDEYEMLQDWEEDNIGFYKQGA 386

Query: 197 NKDGEKLH-PTQKPEALLSRILVSSTKPGDIILD 229
           N     ++ P +K   L   I + S     +  D
Sbjct: 387 NLKSTGVNAPREKRPNLFFPIFIDSNNKVYVTDD 420


>gi|227833136|ref|YP_002834843.1| adenine-specific DNA-methyltransferase [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227454152|gb|ACP32905.1| adenine-specific DNA-methyltransferase [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 431

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 43/127 (33%), Gaps = 4/127 (3%)

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
           +   +  +    +       +   +    ++ L++         YT NY+   A    + 
Sbjct: 257 DGREYWPHQPEGKTKVARWRWGKDKVTEHYDELVFRRGFV----YTKNYEKKGARPRSIL 312

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
               + +      +         +    KP  L+  ++  +  P  +++D F GSGT+  
Sbjct: 313 DGERFGVTRTGRRDAEEALGTTGVFDFPKPVRLIKHLISIAGGPDAVVVDFFAGSGTTAQ 372

Query: 240 VAKKLRR 246
              +L R
Sbjct: 373 AVVELNR 379



 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 47/140 (33%), Gaps = 3/140 (2%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99
            D+I+ DPPYN   +           D  ++ + ++ +   + +     L+  R VL   
Sbjct: 89  ADVIYIDPPYNTGKDFVYRDNFRQRRDMRSEHFGQWHA--EWLSMMLPRLILAREVLADT 146

Query: 100 GTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
           G + V         +  +L  +         +  K         +     HE ++  + S
Sbjct: 147 GFILVSIGESECAHLRLILNEVFGEDCFAGQLIWKKGGTGKNDSKYAVLEHEYVLCYAKS 206

Query: 159 PKAKGYTFNYDALKAANEDV 178
               G+  + +A  +   + 
Sbjct: 207 SANNGFNVDMEAQTSTRYNH 226


>gi|325996645|gb|ADZ52050.1| Type III restriction-modification system methylation subunit
           [Helicobacter pylori 2018]
 gi|325998234|gb|ADZ50442.1| Type III restriction-modification system methylation subunit
           [Helicobacter pylori 2017]
          Length = 474

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 17/110 (15%)

Query: 15  SIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
           S  E    +IK  +   L  L     +++D I+ DPPYN Q N  +Y  +          
Sbjct: 374 SENEINGTLIKSENYQALNSLKNRYKEAIDCIYIDPPYNTQNNEFVYADNFKRSS----- 428

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
                    + A     L     +L   G ++V    +       ++  +
Sbjct: 429 ---------WLAMMENRLELAHALLNDKGVMFVSIDDNEQAYCKALMDEV 469


>gi|308062653|gb|ADO04541.1| Adenine-specific DNA methylase [Helicobacter pylori Cuz20]
          Length = 477

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 17/114 (14%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
           +N  S  E    +IK  +   L  L     +++D I+ DPPYN Q N  +Y  +      
Sbjct: 366 KNLFSEDEINGTLIKSENYQALNSLKNRYKETIDCIYIDPPYNTQNNEFIYADNFKRSS- 424

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
                        + +     L    ++L   G ++V    +    + T++  +
Sbjct: 425 -------------WLSMMSNRLELAHKLLNDKGVMFVSIDDNEQAYLKTLMDEV 465


>gi|257459310|ref|ZP_05624424.1| DNA methylase [Campylobacter gracilis RM3268]
 gi|257443323|gb|EEV18452.1| DNA methylase [Campylobacter gracilis RM3268]
          Length = 225

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 55/200 (27%), Gaps = 29/200 (14%)

Query: 39  SVDLIFADPPYNLQLN-----------GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT-R 86
              L+ AD PYNL  N           G     +  L        D+      +  F  +
Sbjct: 18  KAQLVIADIPYNLGNNAYASNPVWYVGGDNANGESKLAGKSFFDTDENFKVAEFMHFCSK 77

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
             +   +   +    +           I    +      +N +  +KS+        R  
Sbjct: 78  MLIKEPKEAGRAPAMIVFCAFEQQAPLIELAARYGFAHYINLVFRKKSSSQVLKANMRIV 137

Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
              E  +        K   FN       N    +  D  +P              K+HPT
Sbjct: 138 GNCEYALIFYRDKLPK---FNGGGRMRMNCIDWVSDDASVP--------------KIHPT 180

Query: 207 QKPEALLSRILVSSTKPGDI 226
           QKP  LL  ++   T  G  
Sbjct: 181 QKPVKLLEYLISLFTDVGGC 200


>gi|212224690|ref|YP_002307926.1| SAM-dependent methyltransferase [Thermococcus onnurineus NA1]
 gi|212009647|gb|ACJ17029.1| SAM-dependent methyltransferase [Thermococcus onnurineus NA1]
          Length = 282

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 27/85 (31%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K +II G++  V+++    S D+I  DPP    L G LY                  S E
Sbjct: 178 KIQIIHGDAFEVVKRFNDGSFDVIIHDPP-RFSLAGHLY------------------SGE 218

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWV 104
            Y+           R+LKP G L+ 
Sbjct: 219 FYE--------ELFRILKPGGRLFH 235


>gi|189219817|ref|YP_001940458.1| DNA modification methylase [Methylacidiphilum infernorum V4]
 gi|189186675|gb|ACD83860.1| DNA modification methylase [Methylacidiphilum infernorum V4]
          Length = 179

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 17/93 (18%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++I  G++  +L ++   S+ L    PPY      + +                  SFE 
Sbjct: 39  NEIYLGDARQLLPQIEPNSIALSVWSPPYFFGKKYEAH-----------------LSFED 81

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
           +    +  +     ++KP G L +  +   +FR
Sbjct: 82  WQNLLKTVIRLHYPIIKPGGFLVINIADILVFR 114


>gi|110834940|ref|YP_693799.1| hypothetical protein ABO_2079 [Alcanivorax borkumensis SK2]
 gi|110648051|emb|CAL17527.1| hypothetical protein ABO_2079 [Alcanivorax borkumensis SK2]
          Length = 704

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++LDPF GSGT+   A KL    +G ++  
Sbjct: 89  VVLDPFMGSGTTLGEAVKLGAKAVGCDINP 118



 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 20/118 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY--NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++ G+S  +   +P KS+D +  DPPY   +  +         L   + D ++ FS  ++
Sbjct: 481 VLNGDSSKL--SVPEKSIDAVITDPPYFDFVHYSELSDFFFAWLSPVLKDRYEWFSRADS 538

Query: 81  -------------YDAFTRAWLLACRRVLKPNGTL---WVIGSYHNIFRIGTMLQNLN 122
                        +     +      RVLK  G L   +          I   + N  
Sbjct: 539 SGEGEVQHKDPLVFSRQLSSVFSEACRVLKDTGVLAFSFHHSRPEGWAAIYEAINNAG 596


>gi|117924097|ref|YP_864714.1| site-specific DNA-methyltransferase (adenine-specific)
           [Magnetococcus sp. MC-1]
 gi|117607853|gb|ABK43308.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Magnetococcus sp. MC-1]
          Length = 649

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 8/119 (6%)

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD---WLIPICSG 191
            P  +   R  ++ H+ L           +++    LK    +VQ       W     SG
Sbjct: 317 WPEEHAVWRYTKDKHDQLEREGRLYWGPDHSYRKPRLKRYLNEVQQGIVPPTWWKFEDSG 376

Query: 192 SERLRNKD-----GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
                 K+     G+K+  T KP  LL R+L      G I++D F GSG  G  A    
Sbjct: 377 HNDEGQKETAKLIGKKVFSTPKPIRLLERLLEVGAPDGGIVVDFFAGSGAFGHAAISRN 435



 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 72/188 (38%), Gaps = 24/188 (12%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNG---QLYRPDHSLVDAVTDSWD 73
           ++ +I+G+++ VL+ L    A  V +I+ DPPYN   +      +R +      +T   D
Sbjct: 100 RNLMIEGDNLEVLKLLQKSYAGKVKMIYIDPPYNTGKDFVYPDDFRDNIRNYLELTGQTD 159

Query: 74  KF-----SSFEAYDAFTRAWLLACRR-------VLKPNGTLWVIGSYHNIFRIGTMLQNL 121
                  S+ EA   F   WL            +L+ +G +++      +    ++  ++
Sbjct: 160 GEGRRVTSNTEASGRFHTDWLNMMYPRLRLARNLLRDDGVIFISLDDTEVANARSVCDDI 219

Query: 122 N--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG---YTFNYDALKAANE 176
                 + +IVW+K   + N         H+ +I    S   K            + +N 
Sbjct: 220 FGAENFVANIVWQKKYAVSN-DDPGIGVMHDHIIAYRKSETFKRGLLPRTKEQNDRYSNP 278

Query: 177 DVQMRSDW 184
           D   R +W
Sbjct: 279 DNDPRGEW 286


>gi|256752456|ref|ZP_05493314.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256748658|gb|EEU61704.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 849

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 2/90 (2%)

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
            P+P    +   Y       +D      +   +  G              T+ P   + R
Sbjct: 37  CPNPFISEFIEKYGKPYEEEKDDYNCEPYTADVSEGKNDPIYNAHSYH--TKVPHKAIMR 94

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
            ++  TKPGDI+ D F G+G +G  A+   
Sbjct: 95  YILHYTKPGDIVFDGFCGTGMTGVAAQMCG 124



 Score = 42.3 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 10/81 (12%)

Query: 28  SISVLEKLPAKSVDLIFADPPYNLQLNGQ---------LYRPDHSLVDAVTDSWDKFSSF 78
           S + L  +P+  +D IF DPP+   L            L    ++  +A+ +   +    
Sbjct: 448 STNELSNIPSNFIDYIFTDPPFGDNLMYSELNFLWESWLKVFTNNRTEAIINKT-QRKGL 506

Query: 79  EAYDAFTRAWLLACRRVLKPN 99
             Y            R+LKP 
Sbjct: 507 NEYQELMEKAFSEMYRILKPG 527


>gi|153833514|ref|ZP_01986181.1| type III restriction-modification system methylation subunit
           [Vibrio harveyi HY01]
 gi|148870165|gb|EDL69106.1| type III restriction-modification system methylation subunit
           [Vibrio harveyi HY01]
          Length = 1030

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 57/203 (28%), Gaps = 29/203 (14%)

Query: 22  KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
            +I  ++   L  +        DLI+ DPPYN      LY+ ++                
Sbjct: 468 TLIHSDNYQALNLIRDKYRNKADLIYIDPPYNTNSTPILYKNEYKRSS------------ 515

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
             + +     L     +L  +G   V      +  +  ++++L+       V    NP  
Sbjct: 516 --WASLMANRLELSMSLLSDDGVKAVAIDDSEVMNLSKIMESLSDEHRLTRVTVVHNPKG 573

Query: 139 NFRGRRFQNAHETLIWASPSPKA--------KGYTFNYDALKAANEDVQMRSDWLIPICS 190
           +     F   HE  ++ +             K  T         N     R     PI  
Sbjct: 574 SITKD-FNRTHEYCLFLTNENDKEAIGRTLEKNDTPRKMRRWGENSLRTERRLSFYPIYV 632

Query: 191 GSER---LRNKDGEKLHPTQKPE 210
                  +     +  HP  K  
Sbjct: 633 RDGEVVGIGKVPHDDFHPEGKNV 655



 Score = 43.8 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 37/104 (35%), Gaps = 14/104 (13%)

Query: 200 GEKLHPTQKPEALLSRILVSST--KPGDIILDPFFGSGTSGAVAKKLRRSFIG------- 250
           GEK     K   L+ R +  ST  K   +I+D F GSGT+     +   S +G       
Sbjct: 734 GEKRFDFPKSINLVKRCIEISTQNKKSPLIIDYFAGSGTTAHAVIEHNYSNVGNKLASFV 793

Query: 251 -IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
            +E  Q +  +   R+               GK   PR  F   
Sbjct: 794 VVEQGQYFETVTKPRVIKA----AYSSEWKNGKALTPRRDFKFF 833


>gi|330818700|ref|YP_004362405.1| Site-specific DNA-methyltransferase [Burkholderia gladioli BSR3]
 gi|327371093|gb|AEA62449.1| Site-specific DNA-methyltransferase [Burkholderia gladioli BSR3]
          Length = 383

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 25/123 (20%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYN------------------LQLNGQLY 58
           K+ +I+G+++ VL+ L    A  V LI+ DPPYN                  L+L GQ+ 
Sbjct: 98  KNLMIEGDNLEVLKLLQKSYAGKVKLIYIDPPYNTGTDFVYPDSFQDSVANYLRLTGQI- 156

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
               + V + T+S  +F +  A+       +      L+ +G L V      +  + T++
Sbjct: 157 -SGGAPVSSNTESSGRFHT--AWLNMIYPRVKLAWNFLRADGFLLVSIDDKELAHLRTVM 213

Query: 119 QNL 121
             L
Sbjct: 214 NEL 216


>gi|319897511|ref|YP_004135708.1| ribosomal protein l11 methyltransferase [Haemophilus influenzae
           F3031]
 gi|317433017|emb|CBY81388.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
           F3031]
          Length = 294

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 67/233 (28%), Gaps = 22/233 (9%)

Query: 103 WVIGSYHNIFRIGTMLQNLNFWILNDIV--WRKSNPMPNFRGRRFQNAH------ETLIW 154
                  +      +L     W   D++  +     M        +  H        +  
Sbjct: 30  VTFMDSQDTPIFEPLLGETRLWGNTDVIALFDAETDMAEIVRLLKEVKHLDSNTAYKIEQ 89

Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEA 211
                  + +  N+  ++         S   +P  +    + +     G   HPT    A
Sbjct: 90  IEDKDWEREWMDNFYPMQFGKRLWICPSWCDVPDENAVNVMLDPGLAFGTGTHPTT---A 146

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYIDIATKRIASVQP 270
           L    L         ++D   GSG     A KL     +GI++    I  +     + + 
Sbjct: 147 LCLEWLDGLDLKDKTVIDFGCGSGILAIAALKLGAKSAVGIDIDPQAILASRN---NAEQ 203

Query: 271 LGNIELTVLTGKRTEPRVAFNLLVERGLIQ-PGQILTNAQGNISATVCADGTL 322
            G  +   L     +P      +V   ++  P + L      IS  V  +G L
Sbjct: 204 NGVADRLQLFLSDEKPSDLKADVVVANILAGPLKELYPI---ISQLVKPNGNL 253


>gi|312792858|ref|YP_004025781.1| DNA methylase N-4/N-6 domain-containing protein
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179998|gb|ADQ40168.1| DNA methylase N-4/N-6 domain protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 860

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 2/86 (2%)

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
            P+P  K +   Y       +D      +   I  G              T+ P   + R
Sbjct: 37  CPNPFIKDFIERYGKKYDEEKDDYNVEPYTADISEGKNDPIYNAHSYH--TKVPYKAIMR 94

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVA 241
            ++  TKPGDI+ D F GSG +G  A
Sbjct: 95  YILHYTKPGDIVFDGFCGSGMTGVAA 120



 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 37/118 (31%), Gaps = 13/118 (11%)

Query: 32  LEKLPAKSVDLIFADPPYNLQL---------NGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           L  +P+ S+D IF DPPY   L            L    ++  +A+ +   +      Y 
Sbjct: 463 LNIIPSNSIDYIFIDPPYGDNLMYSELNFIWEAWLRVFTNNKTEAIINKV-QRKGLHEYQ 521

Query: 83  AFTRAWLLACRRVLKPNGTL-WVIGSYHN--IFRIGTMLQNLNFWILNDIVWRKSNPM 137
                      R+LKP   +     +  N     I   +    F I N     K    
Sbjct: 522 ELMEQCFKEMYRILKPGRWITVEFHNTKNAVWNAIQEAMLRAGFVIANVRALDKKQGS 579


>gi|300866888|ref|ZP_07111563.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300335138|emb|CBN56725.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 810

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 3/93 (3%)

Query: 204 HPTQKPEALLSRILV-SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
                    +S  +  ++ K  +II+DPF G  T+   A +     IG E+   + DI+ 
Sbjct: 33  FIAGFSPEFVSNCIQEANLKSNEIIIDPFAGLSTTLVQANREGIQSIGFEVHPFFYDISL 92

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            ++    P G  ++  +       R  F  L E
Sbjct: 93  AKL--FPPKGEQQINNIESICQSVRPYFGELTE 123


>gi|238751412|ref|ZP_04612905.1| Ribosomal protein L11 methyltransferase [Yersinia rohdei ATCC
           43380]
 gi|238710470|gb|EEQ02695.1| Ribosomal protein L11 methyltransferase [Yersinia rohdei ATCC
           43380]
          Length = 293

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 45/131 (34%), Gaps = 10/131 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    AL  + 
Sbjct: 95  WEREWMDNFHPMRFGERLWICPSWRDVPDPTAVNVMLDPGLAFGTGTHPTT---ALCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  I+D   GSG     A KL     IGI++    I  +     + Q  G  E
Sbjct: 152 LDGLDLVGKTIIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRD---NAQRNGVSE 208

Query: 276 LTVLTGKRTEP 286
              L   + +P
Sbjct: 209 RLELYLSKDQP 219


>gi|237755447|ref|ZP_04584071.1| modification methylase MjaII [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237692379|gb|EEP61363.1| modification methylase MjaII [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 152

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 11/93 (11%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSST---- 221
           YD     N+  +   +W +     SE  R K   ++HP +      L+   L S T    
Sbjct: 59  YDKTYKINQQKEENINWSLSFAEYSEAERTKHVHRIHPYKGKFIPQLVEYFLDSHTDSFK 118

Query: 222 -----KPGDIILDPFFGSGTSGAVAKKLRRSFI 249
                K GDI+LDPF GSGT+   A +L    +
Sbjct: 119 KEVYFKAGDIVLDPFCGSGTTLVQANELGIHAV 151


>gi|317474030|ref|ZP_07933309.1| hypothetical protein HMPREF1016_00287 [Bacteroides eggerthii
           1_2_48FAA]
 gi|316909872|gb|EFV31547.1| hypothetical protein HMPREF1016_00287 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 608

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
             PI + +     K  +  +  ++P  + ++++ + T PG+IILDPF G G +       
Sbjct: 6   YTPIVAKAHTPPYKIHK--YFARRPHNVFNQLIENFTSPGEIILDPFCGGGVTIYEGVTQ 63

Query: 245 RRSFIGIEMKQ 255
            R  IG ++  
Sbjct: 64  DRRVIGCDLNP 74



 Score = 42.3 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 26/81 (32%), Gaps = 20/81 (24%)

Query: 36  PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE---------------- 79
           P  SVD I  DPPY   +  Q     H       D ++++  FE                
Sbjct: 381 PESSVDAIITDPPYGSNV--QYLELSHFWYPWNQDLYERYPIFELEAVANRKKGFNGAKS 438

Query: 80  --AYDAFTRAWLLACRRVLKP 98
              Y+           RVLKP
Sbjct: 439 QYDYENNLYEVFKNAYRVLKP 459


>gi|306818542|ref|ZP_07452265.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
 gi|304648715|gb|EFM46017.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
          Length = 213

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 55/140 (39%), Gaps = 22/140 (15%)

Query: 26  GNSISVLEKLPA------KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           G+ +  L ++P         V LI+ DPP+N                    +++      
Sbjct: 83  GDVLEALTRVPELAEKYVGKVKLIYIDPPFNTA--------------QTFANYEDNLEHS 128

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPM 137
            +    R  L+  +++L+ +G++WV      + R+  +L  +      +++++W+K+   
Sbjct: 129 VWLTMMRDRLVNLKKLLREDGSIWVHLDDVEVHRMRLLLDEIFGSENFISEVIWQKAYGG 188

Query: 138 PNFRGRRFQNAHETLIWASP 157
            N       +    L+++  
Sbjct: 189 NNSSVEFVSSTDTVLVYSKK 208


>gi|218130523|ref|ZP_03459327.1| hypothetical protein BACEGG_02112 [Bacteroides eggerthii DSM 20697]
 gi|217987309|gb|EEC53639.1| hypothetical protein BACEGG_02112 [Bacteroides eggerthii DSM 20697]
          Length = 608

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
             PI + +     K  +  +  ++P  + ++++ + T PG+IILDPF G G +       
Sbjct: 6   YTPIVAKAHTPPYKIHK--YFARRPHNVFNQLIENFTSPGEIILDPFCGGGVTIYEGVTQ 63

Query: 245 RRSFIGIEMKQ 255
            R  IG ++  
Sbjct: 64  DRRVIGCDLNP 74



 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 26/81 (32%), Gaps = 20/81 (24%)

Query: 36  PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE---------------- 79
           P  SVD I  DPPY   +  Q     H       D ++++  FE                
Sbjct: 381 PESSVDAIITDPPYGSNV--QYLELSHFWYPWNQDLYERYPIFELEAVANRKKGFNGAKS 438

Query: 80  --AYDAFTRAWLLACRRVLKP 98
              Y+           RVLKP
Sbjct: 439 QYDYENNLYEVFKNAYRVLKP 459


>gi|75675011|ref|YP_317432.1| hypothetical protein Nwi_0815 [Nitrobacter winogradskyi Nb-255]
 gi|74419881|gb|ABA04080.1| hypothetical protein Nwi_0815 [Nitrobacter winogradskyi Nb-255]
          Length = 308

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 12/79 (15%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-------IATK- 263
           L           G  +LDPF G    G VA +L R ++GIE++ + ++       IA + 
Sbjct: 83  LCEIAYRWFCPQGGTVLDPFAGGSVRGIVASRLGRRYVGIELRHEQVEANRAQVTIAVEP 142

Query: 264 ----RIASVQPLGNIELTV 278
               R+   + LG I   V
Sbjct: 143 SPEWRVGDARDLGAIAADV 161


>gi|317495341|ref|ZP_07953711.1| DNA methylase [Gemella moribillum M424]
 gi|316914763|gb|EFV36239.1| DNA methylase [Gemella moribillum M424]
          Length = 352

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 54/144 (37%), Gaps = 23/144 (15%)

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
           ++  +KS  +        + + E +  A+      GY       K    +   RS W   
Sbjct: 35  ELFPKKSQGISTVWRWGKEKSLENINIAAKKMIDGGY---MIVEKYRKNETMARSVW--- 88

Query: 188 ICSGSERLRNK---------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
             +G E    K         +G K+    K   ++ +I    + P DIILD F GS T+ 
Sbjct: 89  --NGKEDNSEKGTLLVKELFNGNKVFDFPKSNDMIKKIFEIGSCPNDIILDFFSGSATTA 146

Query: 239 AVAKKL------RRSFIGIEMKQD 256
               KL       R +I +++ ++
Sbjct: 147 HAVMKLNAEDGGNRKYILVQLPEE 170


>gi|260905599|ref|ZP_05913921.1| pseudogene (putative type III restriction-modification system
           modification protein) [Brevibacterium linens BL2]
          Length = 406

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 87/303 (28%), Gaps = 72/303 (23%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQ--LNGQLYRPDHS------------ 63
           + ++ G+++  L +L A     + +++ DPPYN    L  + +  DH+            
Sbjct: 49  NMLVVGDNLPALTRLLATHRGRIKVVYIDPPYNTGNALAYKDHGHDHASWLNFMTPRLML 108

Query: 64  -------------LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
                         +D    +W +    E +        L  +R      +   +  +  
Sbjct: 109 ARELMREDGVIFIHLDDGESAWAQLLGHEIFGEDNSLGTLIHQRAKGGGNSPSFVRGHDY 168

Query: 111 IFRIGTMLQNLNFWILNDIVWRKSNPMPNFR------------GRRFQNAHETLIWASPS 158
           +     +      ++       K   +   R            GR  +     L++    
Sbjct: 169 VHVWAKVADQAGAFLTEKKAPAKLEIIDGKRMLVETDVLRAGFGRYARGQERRLMYEDIL 228

Query: 159 PKAKG--------------YTFNYDALKAAN--------EDVQMRSDWLIPICSGSERLR 196
                              Y          +        E    +   +I    G   L 
Sbjct: 229 EVKGPKKLAEVDAKLGTGEYVLRPWGPAGKHAVVRVTPAEKASSKLYSIIKALGGQNDLE 288

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTK--PGDIILDPFFGSGTSGAVAKKLR------RSF 248
           +     +    KP  L+  ++ S T   PG I+LD F GSGT+              R+F
Sbjct: 289 DLGLGGIFSYPKPVELVKTLVASQTFFDPGAIVLDFFAGSGTTAQAVMAANERDAGSRTF 348

Query: 249 IGI 251
           I I
Sbjct: 349 ILI 351


>gi|312111959|ref|YP_003990275.1| DNA methylase N-4/N-6 domain protein [Geobacillus sp. Y4.1MC1]
 gi|311217060|gb|ADP75664.1| DNA methylase N-4/N-6 domain protein [Geobacillus sp. Y4.1MC1]
          Length = 595

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 30/52 (57%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
            S+R  N      +PT+    +++  + S TKPGD++LD F GSGT+G  A 
Sbjct: 14  PSKRSGNLYSAFSYPTKISPEVIAVFIASHTKPGDVVLDTFGGSGTTGLAAL 65



 Score = 45.4 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 11/88 (12%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY---------NLQLNGQLYRPDHSLVDAVTDSW 72
           K+I G+S   +++L  +SV+ +F DPP+         N      L +  ++  +A+  S 
Sbjct: 383 KVINGSSTK-MDELSDESVNYVFTDPPFGDYIPYSELNFLNEVWLGKKTNTEQEAII-SN 440

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNG 100
            +  +   Y            RVL P+G
Sbjct: 441 SQKKTVNDYQHLMEQVFKEISRVLTPDG 468


>gi|307944065|ref|ZP_07659406.1| gp77 [Roseibium sp. TrichSKD4]
 gi|307772411|gb|EFO31631.1| gp77 [Roseibium sp. TrichSKD4]
          Length = 305

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 8/77 (10%)

Query: 194 RLRNKDGEKLHPTQKPEA------LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           R     G+   P    E       L   ++   +  G  +LDPF G    G V+  L R+
Sbjct: 57  RWHQIQGQDHKPADWMEKSVFDPVLTELLVAWFSPKGGRVLDPFAGGSVRGIVSALLGRT 116

Query: 248 FIGIEMKQDYIDIATKR 264
           ++G+++ ++   I   R
Sbjct: 117 YLGVDISEE--QIIENR 131


>gi|34451623|gb|AAQ72369.1| BseRI methylase fusion protein [Bacillus sp. R]
          Length = 1309

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 25/39 (64%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           +PT+     ++  + S TKPGD++LD F GSGT+G  A 
Sbjct: 43  YPTKISPESIAVFIASHTKPGDVVLDTFGGSGTTGIAAH 81



 Score = 42.3 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 14/105 (13%)

Query: 5   NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN-------LQLNGQL 57
            + AI EN +S       ++ G S  +   +P KSVD +F DPP+        L    ++
Sbjct: 386 KAFAILENSDS----NVTVVNGTSTDL--DIPDKSVDYVFTDPPFGDYIPYAELNFLNEV 439

Query: 58  Y-RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
           +     +  + +  S  +  S   Y            R LK +G 
Sbjct: 440 WLGKTTNRTNEIIISPKQEKSVTTYAELMAGVFKEISRTLKNDGA 484


>gi|156972541|ref|YP_001443448.1| ribosomal protein L11 methyltransferase [Vibrio harveyi ATCC
           BAA-1116]
 gi|166223500|sp|A7MXI3|PRMA_VIBHB RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|156524135|gb|ABU69221.1| hypothetical protein VIBHAR_00173 [Vibrio harveyi ATCC BAA-1116]
          Length = 295

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 54/168 (32%), Gaps = 12/168 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  +K         S   IP       + +     G   HPT    AL    
Sbjct: 96  WEREWMENFHPMKFGERLWICPSWREIPEPDAVNVMLDPGLAFGTGTHPTT---ALCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG     A KL     IGI++    +  +     + +  G   
Sbjct: 153 LESLDLSGKTVIDFGCGSGILAIAAIKLGAEKVIGIDIDPQALQASRD---NAERNGVAN 209

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
              +   + +P      +V   ++     L      I + V  +G L 
Sbjct: 210 QLEVFLPQNQPEGLIADVVVANIL--AGPLRELAPIIKSLVKPNGDLA 255


>gi|289578544|ref|YP_003477171.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter italicus
           Ab9]
 gi|289528257|gb|ADD02609.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter italicus
           Ab9]
          Length = 853

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 2/90 (2%)

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
            P+P    +   Y       +D      +   +  G              T+ P   + R
Sbjct: 37  CPNPFISEFIEKYGKPYEEEKDDYNCEPYTADVSEGKNDPIYNAHSYH--TKVPHKAIMR 94

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
            ++  TKPGDI+ D F G+G +G  A+   
Sbjct: 95  YILHYTKPGDIVFDGFCGTGMTGVAAQMCG 124



 Score = 39.2 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 10/74 (13%)

Query: 35  LPAKSVDLIFADPPY---------NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           + + S+D IF DPP+         N      L    ++  +A+ +   +      Y    
Sbjct: 459 IKSNSIDYIFTDPPFGDNLMYSELNFLWEAWLKVFTNNKTEAIINKV-QRKGLHEYQELM 517

Query: 86  RAWLLACRRVLKPN 99
                   R+LKP 
Sbjct: 518 EKAFSEMYRILKPG 531


>gi|228925013|ref|ZP_04088143.1| Modification methylase MvaI [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228834676|gb|EEM80185.1| Modification methylase MvaI [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 557

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 204 HPTQKPEALLSRILVSSTKPGDI--ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           +P +    ++  +L + +    +  +LDPF GSGT+   AK +   F G ++    I ++
Sbjct: 39  YPAKAVPNMIFDLLENISNQYKVNSVLDPFVGSGTTAVEAKYMGIDFYGSDLNPLAILLS 98

Query: 262 TKRIASV 268
             ++ ++
Sbjct: 99  RTKVLNL 105



 Score = 41.9 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           M +        N +S  E        ++   L+ L  K VD I   PPY    +   Y  
Sbjct: 228 MLEITRNVYKNNVHSTIEL-------DNAKHLKFLKDKKVDFILTSPPYGDSRSTVAYGQ 280

Query: 61  DHSL-VDAVTDSWDKFSSFEAYDAFTRAWLL 90
              L +  ++D  ++  + + Y      +LL
Sbjct: 281 FSRLSLQWMSDLMNEHLNIKVYSENCDEYLL 311


>gi|110004866|emb|CAK99199.1| hypothetical adenine-specific dna methyltransferase c-terminal
           truncated protein [Spiroplasma citri]
          Length = 196

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 80/230 (34%), Gaps = 41/230 (17%)

Query: 37  AKSV--DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
            +S+  D+I A PPYN+  +                +   +   + Y  +T+ W+  C  
Sbjct: 2   DQSIKFDVIIAGPPYNIGKD--------------FGNNIDYMELKKYINWTKKWIKLCLN 47

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
            L  NG L++ G    + RI           L      K++P  NF    +Q +HE ++ 
Sbjct: 48  FLSDNGLLYIYGFSEILARIVAQFPIEKQRFLIWHYTNKTSPSSNF----WQRSHEAILC 103

Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
                +        D ++    D  M+        +G ER+  K       T      + 
Sbjct: 104 LWKDQRPN---LEIDQIREPYTDSYMK-------LNGKERMNTKGRFGTKTT------IY 147

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           ++      P D+I  P   +GT        +R F+  +        + KR
Sbjct: 148 KVNEKGALPRDVIKIPALAAGTGMV-----KRHFMCKDCNNKLYYSSEKR 192


>gi|4454667|gb|AAD20952.1| methyltransferase [Mannheimia haemolytica]
          Length = 706

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 38/307 (12%), Positives = 89/307 (28%), Gaps = 58/307 (18%)

Query: 17  FEWKDKIIKGNSISVLEKLPA----KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
              ++  I+G ++ VL+  P      SV +I+ DPPYN    G  +  + S  D   D  
Sbjct: 129 ENTQNIFIEGENLDVLKD-PQKSYFNSVKMIYNDPPYNT---GNDFIYNDSFADTKADYA 184

Query: 73  DKFSSFEA---------------------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
           +K    +                      +       L   + +L+ +G +++    +  
Sbjct: 185 EKVGDVDEHGKLKRAFVRNSKENGHYHSNWLNMMLPRLHLAKNLLRDDGVIFISIDDNEQ 244

Query: 112 FRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN--- 167
            ++  +   +        I+  ++NP      +    +++  I  + + +   +  N   
Sbjct: 245 AQLKLLCDEVFGEENFVAILSVENNPKGRKNSKFISVSNDFCIIYAKNKEMGKFVENIPK 304

Query: 168 ---YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
                        V      ++   +   +         H +     L   I++      
Sbjct: 305 NAKDMCQDENGHYVHASGKRVLVGENKFNQPVTDFTSDKHYSVYFNKLDDDIILKFEDSL 364

Query: 225 DIILDPFFGSGTSGAVAKKLRR------SFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278
           D                K L         +I      ++++    R   ++   +  L  
Sbjct: 365 DD---------------KDLNLINQGYVRYISF-FDDEFVENTYTRFKFLELFEDESLEF 408

Query: 279 LTGKRTE 285
              K  E
Sbjct: 409 TEDKIYE 415


>gi|319896777|ref|YP_004134971.1| methyltransferase [Haemophilus influenzae F3031]
 gi|317432280|emb|CBY80632.1| predicted methyltransferase [Haemophilus influenzae F3031]
          Length = 711

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 20/109 (18%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N I   + K+I+ + +  LEK   +  DL+F DPP              S    + +SWD
Sbjct: 593 NDIEGKQHKLIQADCLQWLEKC-DRQFDLVFVDPP------------TFSNSKRMEESWD 639

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                          +   +RVL  NGT+    +          L+ L 
Sbjct: 640 VQRDH-------VKLMRNLKRVLSNNGTIVFSNNKRGFKMNLVALEELG 681


>gi|315651945|ref|ZP_07904947.1| type III restriction-modification system EcoP15I [Eubacterium
           saburreum DSM 3986]
 gi|315485774|gb|EFU76154.1| type III restriction-modification system EcoP15I [Eubacterium
           saburreum DSM 3986]
          Length = 219

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 46/117 (39%), Gaps = 22/117 (18%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQLN-----------------GQLYRPDHS 63
           I+G+++ VL+ L       V +I+ DPPYN   +                    Y  + +
Sbjct: 101 IEGDNLEVLKLLQESYLGKVKMIYIDPPYNTGNDFIYNDDFTINGEQYAEESGEYDDNGN 160

Query: 64  LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
            +   TDS  +F S   + +   + LL  R +L  +G +++    +    +   +  
Sbjct: 161 RMFKNTDSNGRFHS--DWCSMIYSRLLVARNLLSDDGVIFISIDDNEQENLKKFVMK 215


>gi|291228539|ref|XP_002734235.1| PREDICTED: predicted protein-like, partial [Saccoglossus
           kowalevskii]
          Length = 772

 Score = 50.0 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 38/95 (40%)

Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
                 N+           I      +++ +G+ +   QKP+ L  +++   +     IL
Sbjct: 587 MESSHLNQVHVDEPQHNFWIVKAESVIKDGEGDVVSKKQKPQQLYEKVIKLCSSKSAWIL 646

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           D   G+GT   V     R+ +G+++ +  ++   K
Sbjct: 647 DGTCGAGTGIMVGLLHSRNVVGVDINEKCVNYCKK 681


>gi|240139364|ref|YP_002963839.1| Adenine-specific DNA methylase containing a Zn-ribbon-like protein
           [Methylobacterium extorquens AM1]
 gi|240009336|gb|ACS40562.1| Adenine-specific DNA methylase containing a Zn-ribbon-like protein
           [Methylobacterium extorquens AM1]
          Length = 709

 Score = 50.0 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 40/139 (28%), Gaps = 21/139 (15%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYN----LQLNGQLYRP--------DHSLVDAV-- 68
           I  G++   L  +P  S+DL+  DPPY         G  + P        D + + A   
Sbjct: 466 IRCGDAAD-LSHIPEGSIDLVLTDPPYFDYIAYSELGHFFVPWMVRLGLLDRAHLSAFPA 524

Query: 69  ---TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL---WVIGSYHNIFRIGTMLQNLN 122
                S     +   ++      L    RV +P   +   +          +   L  + 
Sbjct: 525 GQLATSLGHEDAVGIFERALTVRLREVARVCRPGARIVFTYQSLDGRGWRALAGALGAVG 584

Query: 123 FWILNDIVWRKSNPMPNFR 141
              L+             +
Sbjct: 585 MRPLHAWPMYGDGGSGPHK 603


>gi|123443996|ref|YP_001007966.1| ribosomal protein L11 methyltransferase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|166223501|sp|A1JRL5|PRMA_YERE8 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|122090957|emb|CAL13839.1| ribosomal protein L11 methyltransferase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 293

 Score = 50.0 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 45/131 (34%), Gaps = 10/131 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    AL  + 
Sbjct: 95  WEREWMDNFHPMRFGERLWICPSWRDVPDPTAVNVMLDPGLAFGTGTHPTT---ALCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG     A KL     IGI++    I  +     + Q  G  E
Sbjct: 152 LDGLNLAGKTVIDFGCGSGILAIAALKLGAAHAIGIDIDPQAIQASRD---NAQRNGVSE 208

Query: 276 LTVLTGKRTEP 286
              L   + +P
Sbjct: 209 RLELYLAKDQP 219


>gi|294787934|ref|ZP_06753178.1| type III restriction-modification system, methylase subunit
           [Simonsiella muelleri ATCC 29453]
 gi|294484227|gb|EFG31910.1| type III restriction-modification system, methylase subunit
           [Simonsiella muelleri ATCC 29453]
          Length = 580

 Score = 50.0 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 20/90 (22%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGI- 251
           D +      KP   + R+L   +    II+D F GSGT+     +L       R +I + 
Sbjct: 346 DNKAFFDYPKPTNFVQRMLELYSNSDSIIMDFFSGSGTTAHAVMQLNAEDGGNRRYICVQ 405

Query: 252 ---EMKQDY----------IDIATKRIASV 268
              E                +IA +RI   
Sbjct: 406 LPEECDPKSEAAKAGFANIAEIAKERIRRA 435



 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 73/213 (34%), Gaps = 35/213 (16%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD- 61
           Q  S+  N+ QN   E ++      ++ +L+K  A  V +I+ DPPYN   +  +Y    
Sbjct: 39  QSESVDFNQTQNIFIEAEN----MEALKILQKSYAGKVKMIYIDPPYNTGSDSFIYPDKF 94

Query: 62  --------HSLVDAVTDSWDKFSS----------------FEAYDAFTRAWLLACRRVLK 97
                     + D  TD + K                      + +     L   + +L+
Sbjct: 95  SETRKEYAQRVGDTDTDGYLKRDGVFQGAFRKNSKENGHYHSNWLSMMLPRLHLAKTLLR 154

Query: 98  PNGTLWVIGSYHNIFRIGTMLQN--LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
            +G +++    +   ++  +              V  +    P    R F  +H+ L+  
Sbjct: 155 DDGVIFISIDDNEQAQLKLLCDEEVFGAENFVGEVIWERAYSPVNLKRHFSESHDYLLCY 214

Query: 156 SPSPK---AKGYTFNYDAL-KAANEDVQMRSDW 184
           + +       G   N +A  + +N D   R  W
Sbjct: 215 AKNKDLAVCNGLKRNDEANSRYSNPDNDSRGIW 247


>gi|291460837|ref|ZP_06600217.1| type III restriction-modification system, methylase subunit
           [Fusobacterium periodonticum ATCC 33693]
 gi|291380429|gb|EFE87947.1| type III restriction-modification system, methylase subunit
           [Fusobacterium periodonticum ATCC 33693]
          Length = 272

 Score = 50.0 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 41/115 (35%), Gaps = 20/115 (17%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGI- 251
           D +K+    K    L  ++    K  DIILD F GS T+     +L       R +I + 
Sbjct: 26  DDKKIFEYPKSTEYLKYLVAIGVKIDDIILDFFSGSATTAHSVMQLNAEDGGNRKYIMVQ 85

Query: 252 ------EMKQDY-------IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
                 E  + Y        +I  +RI         + ++    R +  V F + 
Sbjct: 86  LPELCDEDSEAYKAGYKNICEIGKERIRRAGEKIKSDESLPLENREKLDVGFKVF 140


>gi|309809210|ref|ZP_07703080.1| conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D]
 gi|308170444|gb|EFO72467.1| conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D]
          Length = 395

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 2/81 (2%)

Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
           N+  Q   D+     SG   +       +   Q    LLS I          +LDPF GS
Sbjct: 9   NKYPQDYWDFKGITKSGIHNIGKYPATMVPDMQY--QLLSVISKHLNNKNISLLDPFCGS 66

Query: 235 GTSGAVAKKLRRSFIGIEMKQ 255
           GT+  +A++L  + +GI++  
Sbjct: 67  GTTLVIAQELGINSVGIDINP 87



 Score = 36.9 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 23  IIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           II G+S S++  KL  +  D+I   PPY        Y     L     DS D + S E  
Sbjct: 222 IIYGDSSSIINNKLKGE-FDIICTSPPYGDNPTTVTYGQASILFLKWIDSKDLYCSQELL 280

Query: 82  DAFT 85
           + +T
Sbjct: 281 EKYT 284


>gi|225181260|ref|ZP_03734705.1| DNA methylase [Dethiobacter alkaliphilus AHT 1]
 gi|225168040|gb|EEG76846.1| DNA methylase [Dethiobacter alkaliphilus AHT 1]
          Length = 388

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 22/58 (37%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
                 L    +   +K GD++ DPF G GT+   A  L RS    +     I I   
Sbjct: 36  ASFKPELPDYCIRKYSKAGDVVADPFCGRGTTALQANLLGRSAWVNDANPLAICITRA 93



 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 6/90 (6%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPY--NLQLNGQLYRPDHSLV---DAVTDSWDK 74
           +++ ++ ++ + L   P  SVDL+   PP+   +      +     L      +     +
Sbjct: 227 QNRYLQSDARN-LSPWPDNSVDLVVTSPPFLNCVNYVHDNWLEHWFLNIDPSILKGRITQ 285

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
            +S   + +F    LL   R+L+  G    
Sbjct: 286 TASIRVWKSFVAHVLLEIGRILRVGGICVF 315


>gi|145641446|ref|ZP_01797024.1| predicted methyltransferase [Haemophilus influenzae R3021]
 gi|145273737|gb|EDK13605.1| predicted methyltransferase [Haemophilus influenzae 22.4-21]
          Length = 711

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 40/109 (36%), Gaps = 20/109 (18%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N I   + K+I+ + +  LEK   +  DLIF DPP              S    + +SWD
Sbjct: 593 NDIKGKQHKLIQADCLQWLEKC-DRQFDLIFVDPP------------TFSNSKRMEESWD 639

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                          +   +RVL  NGT+    +         +L+ L 
Sbjct: 640 VQRDH-------VKLMSNLKRVLSNNGTIVFSNNKRGFKMNLVVLEELG 681


>gi|18977247|ref|NP_578604.1| hypothetical protein PF0875 [Pyrococcus furiosus DSM 3638]
 gi|18892912|gb|AAL80999.1| hypothetical protein PF0875 [Pyrococcus furiosus DSM 3638]
          Length = 287

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 28/98 (28%)

Query: 8   AINENQNSIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
            IN     +F  K+ KII+G++  V+++   +S  +I  DPP    L G+LY        
Sbjct: 167 RINPWSRELFTNKNIKIIQGDAFFVIKEFEDESFHVIIHDPP-RFSLAGELY-------- 217

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
                             +  +     RVLKP G L+ 
Sbjct: 218 ------------------SEEFYEELYRVLKPGGRLFH 237


>gi|328463040|gb|EGF34824.1| hypothetical protein AAULH_13776 [Lactobacillus helveticus MTCC
           5463]
          Length = 69

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           LDPF G  T+   A  L R FI IE+++ Y         S++ L       L   + E
Sbjct: 2   LDPFGGLATTAKAAIDLNRHFISIELEKKYF------YDSLKDLNKDYGMYLNSGKVE 53


>gi|237809272|ref|YP_002893712.1| 50S ribosomal protein L11 methyltransferase [Tolumonas auensis DSM
           9187]
 gi|259534600|sp|C4LAF1|PRMA_TOLAT RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|237501533|gb|ACQ94126.1| ribosomal protein L11 methyltransferase [Tolumonas auensis DSM
           9187]
          Length = 292

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 60/175 (34%), Gaps = 12/175 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  ++  ++         S   +P  +    L +     G   HPT    AL  + 
Sbjct: 93  WVREWMEHFQPMQFGERLWICPSWRDVPDPTAVNVLLDPGLAFGTGTHPTT---ALCLQW 149

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG     A KL     IGI++    I+ +     + Q  G  +
Sbjct: 150 LDSLDLKGKTLVDFGCGSGILAIAALKLGAERVIGIDIDPQAIEASRD---NAQRNGVSD 206

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGS 330
              L     +P+     +V   ++     L    G IS  V   G +     L S
Sbjct: 207 QLELYLPEDQPKNFQADIVVANIL--AGPLRELSGLISGLVKPHGLMAISGILES 259


>gi|332672827|gb|AEE69644.1| type III restriction enzyme M protein [Helicobacter pylori 83]
          Length = 136

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 17/114 (14%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
           +N  S  E    +IK  +   L  L     +++D I+ DPPYN Q N  +Y  +      
Sbjct: 28  KNLFSENEINGTLIKSENYQALNSLKNRYKETIDCIYIDPPYNTQNNEFIYADNFKRSS- 86

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
                        + +     L    ++L   G ++V    +    + T++  +
Sbjct: 87  -------------WLSMIENRLELAHKLLNNKGVMFVSIDDNEQAYLKTLMDEV 127


>gi|189501357|ref|YP_001960827.1| hypothetical protein Cphamn1_2452 [Chlorobium phaeobacteroides BS1]
 gi|189496798|gb|ACE05346.1| conserved hypothetical protein [Chlorobium phaeobacteroides BS1]
          Length = 402

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADP 47
            +I G+S+  LE  P +S DLIF DP
Sbjct: 143 TVIHGDSVKTLETFPDESFDLIFIDP 168


>gi|167037340|ref|YP_001664918.1| DNA methylase N-4/N-6 domain-containing protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115756|ref|YP_004185915.1| DNA methylase N-4/N-6 domain-containing protein [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|166856174|gb|ABY94582.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928847|gb|ADV79532.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 845

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 2/90 (2%)

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
            P+P    +   Y       +D      +   +  G              T+ P   + R
Sbjct: 37  CPNPFISEFIEKYGKPYVEEKDDYNCEPYTADVSEGKNDPIYNAHSYH--TKVPHKAIMR 94

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
            ++  TKPGDI+ D F G+G +G  A+   
Sbjct: 95  YILHYTKPGDIVFDGFCGTGMTGVAAQMCG 124



 Score = 43.1 bits (100), Expect = 0.080,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 10/77 (12%)

Query: 32  LEKLPAKSVDLIFADPPY---------NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           L++    S+D IF DPP+         N      L    ++  +A+ +   +      Y 
Sbjct: 448 LKQFSDNSIDYIFTDPPFGDNLMYSELNFLWEAWLKVFTNNKTEAIINKV-QRKGLHEYQ 506

Query: 83  AFTRAWLLACRRVLKPN 99
                      R+LKP 
Sbjct: 507 ELMEKAFSEMYRILKPG 523


>gi|119946134|ref|YP_943814.1| DNA methylase N-4/N-6 domain-containing protein [Psychromonas
           ingrahamii 37]
 gi|119864738|gb|ABM04215.1| DNA methylase N-4/N-6 domain protein [Psychromonas ingrahamii 37]
          Length = 658

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 54/165 (32%), Gaps = 23/165 (13%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQL----------NGQLYRPDHSLVD- 66
           +  I+G+++  L+ L       V +I+ DPPYN             N   Y    +  D 
Sbjct: 99  NLFIEGDNLDALKLLQETYLGKVKMIYIDPPYNTGNDFIYKDDFAENADSYAKKSNQQDE 158

Query: 67  ------AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
                 A TDS  ++ S   + +   + L   R +L  +G +++      +     +L  
Sbjct: 159 IGNRLVANTDSNGRYHS--DWTSMIYSRLRLARNLLTEDGVIFMSIGQEEVAASCQILNE 216

Query: 121 -LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
            L       I+ R                   L++A        +
Sbjct: 217 VLGENNFITIISRVMKTGGQKGVHFSPCVDYILVYAKKIEHLNQF 261



 Score = 41.9 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 7/57 (12%)

Query: 207 QKPEALLSRILVSST-KPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEMKQD 256
            KP +L+  ++   +    D+ILD F GSGT+   + +          F+ ++++++
Sbjct: 422 PKPTSLIRYLMTLVSLNDNDVILDFFAGSGTTAHASIEYAKDNNCNNKFVCVQLREE 478


>gi|307264218|ref|ZP_07545809.1| Ribosomal protein L11 methyltransferase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|306870464|gb|EFN02217.1| Ribosomal protein L11 methyltransferase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 316

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 58/167 (34%), Gaps = 12/167 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    AL  + 
Sbjct: 118 WEREWMDNFHPMQFGKRLWICPSWREVPDPNAVNVMLDPGLAFGTGTHPTT---ALCLQW 174

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG     A KL  +  IGI++    I  +     + +  G  +
Sbjct: 175 LDSLDLTGKTVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAILASGN---NAEANGVAD 231

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
              L   + +P+     +V   ++     L     NI   V   G L
Sbjct: 232 RLQLFLAKDQPQDLQADVVVANIL--AGPLKELAPNIITLVKPQGDL 276


>gi|307250814|ref|ZP_07532743.1| Ribosomal protein L11 methyltransferase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306857173|gb|EFM89300.1| Ribosomal protein L11 methyltransferase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 316

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 58/167 (34%), Gaps = 12/167 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    AL  + 
Sbjct: 118 WEREWMDNFHPMQFGKRLWICPSWREVPDPNAVNVMLDPGLAFGTGTHPTT---ALCLQW 174

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG     A KL  +  IGI++    I  +     + +  G  +
Sbjct: 175 LDSLDLTGKTVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAILASGN---NAEANGVAD 231

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
              L   + +P+     +V   ++     L     NI   V   G L
Sbjct: 232 RLQLFLAKDQPQDLQADVVVANIL--AGPLKELAPNIITLVKPQGDL 276


>gi|190150867|ref|YP_001969392.1| ribosomal protein L11 methyltransferase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|226705030|sp|B3GYL9|PRMA_ACTP7 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|189915998|gb|ACE62250.1| ribosomal protein L11 methyltransferase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
          Length = 293

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 58/167 (34%), Gaps = 12/167 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    AL  + 
Sbjct: 95  WEREWMDNFHPMQFGKRLWICPSWREVPDPNAVNVMLDPGLAFGTGTHPTT---ALCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG     A KL  +  IGI++    I  +     + +  G  +
Sbjct: 152 LDSLDLTGKTVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAILASGN---NAEANGVAD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
              L   + +P+     +V   ++     L     NI   V   G L
Sbjct: 209 RLQLFLAKDQPQDLQADVVVANIL--AGPLKELAPNIITLVKPQGDL 253


>gi|46143540|ref|ZP_00135031.2| COG2264: Ribosomal protein L11 methylase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126209001|ref|YP_001054226.1| ribosomal protein L11 methyltransferase [Actinobacillus
           pleuropneumoniae L20]
 gi|303250992|ref|ZP_07337180.1| ribosomal protein L11 methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307253193|ref|ZP_07535069.1| Ribosomal protein L11 methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|166223391|sp|A3N2I5|PRMA_ACTP2 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|126097793|gb|ABN74621.1| ribosomal protein L11 methyltransferase [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|302650149|gb|EFL80317.1| ribosomal protein L11 methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306859337|gb|EFM91374.1| Ribosomal protein L11 methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 293

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 58/167 (34%), Gaps = 12/167 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    AL  + 
Sbjct: 95  WEREWMDNFHPMQFGKRLWICPSWREVPDPNAVNVMLDPGLAFGTGTHPTT---ALCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG     A KL  +  IGI++    I  +     + +  G  +
Sbjct: 152 LDSLDLTGKTVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAILASGN---NAEANGVAD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
              L   + +P+     +V   ++     L     NI   V   G L
Sbjct: 209 RLQLFLAKDQPQDLQADVVVANIL--AGPLKELAPNIITLVKPQGDL 253


>gi|238921360|ref|YP_002934875.1| ribosomal protein L11 methyltransferase [Edwardsiella ictaluri
           93-146]
 gi|259534519|sp|C5BEW8|PRMA_EDWI9 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|238870929|gb|ACR70640.1| ribosomal protein L11 methyltransferase, putative [Edwardsiella
           ictaluri 93-146]
          Length = 293

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 7/108 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++  +      S   IP       + +     G   HPT    AL  + 
Sbjct: 95  WEREWMDNFHPMQFGHRLWICPSWREIPEPDAVNVMLDPGLAFGTGTHPTT---ALCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           L      G  ++D   GSG     A KL     IGI++    I  +  
Sbjct: 152 LDGLDLAGKTVIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRD 199


>gi|330723413|gb|AEC45783.1| Putative type III restriction-modification system: methylase
           [Mycoplasma hyorhinis MCLD]
          Length = 369

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 9/84 (10%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI-ILDPFFGSGTSGAVAKKLR---- 245
           GS+ + +   +K+    KP  L+  ++  ++   DI ILD F GSGT+     +L     
Sbjct: 195 GSKEMTSIFKDKMFDYPKPVELVKYLIKMASSKKDIRILDFFAGSGTTAQAVLELNKEDG 254

Query: 246 --RSFIGIEMKQDYI--DIATKRI 265
             RSF+ +   ++ I  ++  +R+
Sbjct: 255 GRRSFVLVTNNENNIGQNVTYQRL 278


>gi|323492070|ref|ZP_08097232.1| ribosomal protein L11 methyltransferase [Vibrio brasiliensis LMG
           20546]
 gi|323313631|gb|EGA66733.1| ribosomal protein L11 methyltransferase [Vibrio brasiliensis LMG
           20546]
          Length = 295

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 55/168 (32%), Gaps = 12/168 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  +K         S   IP       + +     G   HPT    AL    
Sbjct: 96  WEREWMDNFHPMKFGERLWICPSWREIPEPDAVNVMLDPGLAFGTGTHPTT---ALCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG     A KL     IGI++    +  +     + +  G  +
Sbjct: 153 LEGLDLSGKTVIDFGCGSGILAIAAIKLGAEKVIGIDIDPQALLASKD---NAERNGVAD 209

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
              +   + +P      +V   ++     L +    I + V  +G L 
Sbjct: 210 QLEVFLPQDQPEGLIADVVVANIL--AGPLRDLSPIIKSLVKPNGELA 255


>gi|268324659|emb|CBH38247.1| hypothetical protein BSM_17240 [uncultured archaeon]
          Length = 436

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
            P      +   ++   T P  I+ DPF G GT+   A  L R  I  E+      ++ +
Sbjct: 63  FPATFVPEIPFTLIEVLTLPNAIVYDPFAGIGTTYFQALLLNRKPITTEI----CRVSIE 118

Query: 264 RIASVQPLGNIELTVLTGKR 283
            + S+  L N E+T  + K 
Sbjct: 119 YMRSLFILFNPEITFDSLKE 138



 Score = 43.8 bits (102), Expect = 0.040,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 45/163 (27%), Gaps = 26/163 (15%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPY-----------------NLQLNGQLYRPDH 62
           K  I   ++    E +P   VDL+   PPY                    +  +    D 
Sbjct: 270 KQTIFYEDARKY-ETIPDNFVDLVVTSPPYPNMTDYVTSQRLSYYFLGCDVTDKNRLIDP 328

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
           +L         +  S + Y    +       + +K  G    +    N       + N N
Sbjct: 329 NLEIGARSRRRRKDSIDRYLEDMQRANEVISQKIKSGGYACYVMPVFN-------VDNEN 381

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
                 IV +    M    G   +  +E ++          +T
Sbjct: 382 NRNRKRIVQKVLFSMDE-CGLIMEGEYERILPTIRRSHNIKWT 423


>gi|12232628|sp|P70986|MTB1_BACST RecName: Full=Modification methylase BsoBI; Short=M.BsoBI; AltName:
           Full=N(4)- cytosine-specific methyltransferase BsoBI
 gi|2113827|emb|CAA66933.1| BsoBI methylase [Geobacillus stearothermophilus]
          Length = 509

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 211 ALLSRILVS-STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
            L+  ++       GD ILDPF GSGT+   AK L  + IGI++  
Sbjct: 87  ELVQNLIEEFGLSKGDTILDPFLGSGTTSLTAKMLGINSIGIDILP 132



 Score = 43.4 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 20/41 (48%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
           E   ++IK ++++ L K+   + D +   PPY  + +    
Sbjct: 292 ESVHELIKDSALNALPKINDNTFDAVITSPPYCNRYDYTRT 332


>gi|262182373|ref|ZP_06041794.1| adenine-specific DNA-methyltransferase [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 360

 Score = 49.6 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 43/127 (33%), Gaps = 4/127 (3%)

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
           +   +  +    +       +   +    ++ L++         YT NY+   A    + 
Sbjct: 186 DGREYWPHQPEGKTKVARWRWGKDKVTEHYDELVFRRGFV----YTKNYEKKGARPRSIL 241

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
               + +      +         +    KP  L+  ++  +  P  +++D F GSGT+  
Sbjct: 242 DGERFGVTRTGRRDAEEALGTTGVFDFPKPVRLIKHLISIAGGPDAVVVDFFAGSGTTAQ 301

Query: 240 VAKKLRR 246
              +L R
Sbjct: 302 AVVELNR 308



 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 47/140 (33%), Gaps = 3/140 (2%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99
            D+I+ DPPYN   +           D  ++ + ++ +   + +     L+  R VL   
Sbjct: 18  ADVIYIDPPYNTGKDFVYRDNFRQRRDMRSEHFGQWHA--EWLSMMLPRLILAREVLADT 75

Query: 100 GTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
           G + V         +  +L  +         +  K         +     HE ++  + S
Sbjct: 76  GFILVSIGESECAHLRLILNEVFGEDCFAGQLIWKKGGTGKNDSKYAVLEHEYVLCYAKS 135

Query: 159 PKAKGYTFNYDALKAANEDV 178
               G+  + +A  +   + 
Sbjct: 136 SANNGFNVDMEAQTSTRYNH 155


>gi|239831939|ref|ZP_04680268.1| DNA methylase N-4/N-6 domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239824206|gb|EEQ95774.1| DNA methylase N-4/N-6 domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 399

 Score = 49.6 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +    P   +   +   +K GD ++DPF G GT   VA    R  +G+++  
Sbjct: 22  YYAMFPTDFVRDAIARFSKVGDGVIDPFCGRGTVPFVASSTGRFAVGMDVNP 73


>gi|308182976|ref|YP_003927103.1| Adenine-specific DNA methylase [Helicobacter pylori PeCan4]
 gi|308065161|gb|ADO07053.1| Adenine-specific DNA methylase [Helicobacter pylori PeCan4]
          Length = 474

 Score = 49.6 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 17/103 (16%)

Query: 22  KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
            +IK  +   L  L     +++D I+ DPPYN Q N  +Y  +                 
Sbjct: 377 TLIKSENYQALNSLKNRYKETIDCIYIDPPYNTQNNEFVYADNFKRSS------------ 424

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
             + +     L     +L   G ++V    +    +  ++  +
Sbjct: 425 --WLSMMENRLELAHALLNDKGVMFVSIDDNEQAYLKALMDEV 465


>gi|238021678|ref|ZP_04602104.1| hypothetical protein GCWU000324_01581 [Kingella oralis ATCC 51147]
 gi|237866292|gb|EEP67334.1| hypothetical protein GCWU000324_01581 [Kingella oralis ATCC 51147]
          Length = 479

 Score = 49.6 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 10/68 (14%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGI- 251
           D  ++    KP +L+  +L      GDI LD F GSGT+     ++       R  I I 
Sbjct: 233 DKSQIFTNPKPVSLIQNLLPFILNDGDIFLDFFAGSGTTAQAIMQMNTQDEKKRRCICIQ 292

Query: 252 ---EMKQD 256
              E+  +
Sbjct: 293 LPEELDPN 300


>gi|167044429|gb|ABZ09105.1| hypothetical protein ALOHA_HF4000APKG6D9ctg2g10 [uncultured marine
           crenarchaeote HF4000_APKG6D9]
          Length = 415

 Score = 49.6 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 52/128 (40%), Gaps = 4/128 (3%)

Query: 164 YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL--VSST 221
           YTF+          +  + D+   +     R   +     +       L+  +L  + + 
Sbjct: 8   YTFSKKQFGHLTNKISYKPDFSSLVTFSPNRKLPRHRWFYYKESFSADLVKFLLTKLKTN 67

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA--SVQPLGNIELTVL 279
              D ILDPF G GT+   +K L  + IGI++      I   ++A  + + +  I L + 
Sbjct: 68  SNEDYILDPFCGVGTTSLTSKILGYNHIGIDILPLCTFITNTKLANYNTKKIEEILLGIR 127

Query: 280 TGKRTEPR 287
              +++P+
Sbjct: 128 GKPKSKPK 135


>gi|293394169|ref|ZP_06638469.1| ribosomal protein L11 methyltransferase [Serratia odorifera DSM
           4582]
 gi|291423147|gb|EFE96376.1| ribosomal protein L11 methyltransferase [Serratia odorifera DSM
           4582]
          Length = 293

 Score = 49.6 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 44/131 (33%), Gaps = 10/131 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P       + +     G   HPT    AL  + 
Sbjct: 95  WEREWMDNFHPMRFGERLWICPSWRDVPDPDAVNVMLDPGLAFGTGTHPTT---ALCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG     A KL     IGI++    I  +     + Q  G  E
Sbjct: 152 LDGLDLAGKTVIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRD---NAQRNGVSE 208

Query: 276 LTVLTGKRTEP 286
              L   + +P
Sbjct: 209 RLELYLPKDQP 219


>gi|10798461|emb|CAC12781.1| DNA methyltransferase C1 [Bacillus firmus]
          Length = 380

 Score = 49.6 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 4/88 (4%)

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI-ILDPFFGS 234
           ++     DW     +GS   +       +P +    +   IL +   P    +LDPF GS
Sbjct: 13  KEKLHEIDWDF---TGSSATKGIHSIHPYPAKFIPEIPRTILDTLPLPEGTAVLDPFCGS 69

Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           GT+   A+      +G+++      I+ 
Sbjct: 70  GTTLVEAQSKGYPTVGVDLNPIACLISK 97


>gi|154500150|ref|ZP_02038188.1| hypothetical protein BACCAP_03811 [Bacteroides capillosus ATCC
           29799]
 gi|150271106|gb|EDM98375.1| hypothetical protein BACCAP_03811 [Bacteroides capillosus ATCC
           29799]
          Length = 244

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 18/116 (15%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQ----LNGQLYRPDHSLVDAVT----DSW 72
           I+G+++ VL+ L       V +I+ DPPYN         +  R      + +     D  
Sbjct: 101 IEGDNLEVLKILQESYLGKVKMIYIDPPYNTGHDFIYRDKFQRSQQEENEQMGLYDEDKN 160

Query: 73  DKFSSFEAYDAFTRAW-------LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
             F + E+   F   W       L+  R +L  +G +++      +  +  M   +
Sbjct: 161 QMFENVESNGRFHSDWCSYIYRPLVLARNLLSEDGIIFISIDDGEVGNLRKMCDEI 216


>gi|94311760|ref|YP_584970.1| hypothetical protein Rmet_2828 [Cupriavidus metallidurans CH34]
 gi|93355612|gb|ABF09701.1| putative superfamily S-adenosyl-L-methionine-dependent
           methyltransferase [Cupriavidus metallidurans CH34]
          Length = 474

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 5/104 (4%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +P  +   +   +  E   P    E+L               LD F GSGT+    + L 
Sbjct: 72  MPSHNLPFQRWYRFKEAFSPLMVAESL-----SCLGFWPSTCLDCFGGSGTTALTCQFLG 126

Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
                IE+     D+   +++       I+      K+   R A
Sbjct: 127 IESTSIEVNPFLADLIEAKLSKYDHASLIDDFAGVVKKMSTRSA 170


>gi|153835710|ref|ZP_01988377.1| ribosomal protein L11 methyltransferase [Vibrio harveyi HY01]
 gi|148867643|gb|EDL66931.1| ribosomal protein L11 methyltransferase [Vibrio harveyi HY01]
          Length = 295

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 54/168 (32%), Gaps = 12/168 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  +K         S   IP       + +     G   HPT    AL    
Sbjct: 96  WEREWMENFHPMKFGERLWICPSWREIPEPDAVNVMLDPGLAFGTGTHPTT---ALCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG     A KL     IGI++    +  +     + +  G  +
Sbjct: 153 LEGLDLSGKTVIDFGCGSGILAIAAIKLGAEKVIGIDIDPQALQASRD---NAERNGVAD 209

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
              +   + +P      +V   ++     L      I + V  +G L 
Sbjct: 210 QLEVFLPQNQPEGLIADVVVANIL--AGPLRELAPIIKSLVKPNGDLA 255


>gi|149190657|ref|ZP_01868925.1| ribosomal protein L11 methyltransferase [Vibrio shilonii AK1]
 gi|148835540|gb|EDL52509.1| ribosomal protein L11 methyltransferase [Vibrio shilonii AK1]
          Length = 293

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 55/168 (32%), Gaps = 12/168 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  +K         S   +P       + +     G   HPT    AL    
Sbjct: 96  WEREWMENFHPMKFGERLWICPSWRDVPEPDAVNVMLDPGLAFGTGTHPTT---ALCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG     A KL     IGI++    +  +     + +  G  +
Sbjct: 153 LESLDLAGKTVIDFGCGSGILAIAAIKLGAAKVIGIDIDPQALTASKD---NAERNGVAD 209

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
              L   + +P      +V   ++     L +  G I   V   G L 
Sbjct: 210 QLELFLPQNQPEGLIADVVVANIL--AGPLRDLSGIIKGLVNEGGQLA 255


>gi|254506473|ref|ZP_05118615.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus
           16]
 gi|219550647|gb|EED27630.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus
           16]
          Length = 295

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 55/168 (32%), Gaps = 12/168 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  +K         S   IP       + +     G   HPT    AL    
Sbjct: 96  WEREWMDNFHPMKFGERLWICPSWRDIPEPDAVNVMLDPGLAFGTGTHPTT---ALCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG     A KL     IGI++    +  +     + +  G  +
Sbjct: 153 LEGLDLTGKTVIDFGCGSGILAIAAIKLGAEKVIGIDIDPQALLASKD---NAERNGVAD 209

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
              +   + +P      +V   ++     L +    I + V  +G L 
Sbjct: 210 QLEVFLPQDQPEGLIADVVVANIL--AGPLRDLSPIIKSLVKPNGELA 255


>gi|284008032|emb|CBA74131.1| type III restriction-modification system: methylase [Arsenophonus
           nasoniae]
          Length = 300

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 16/127 (12%)

Query: 1   MSQKNSLAINENQNSIFEWKDK---IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLN 54
           ++       +  + +I ++ +    IIKGN++ VL  L      S+  +F DPPY     
Sbjct: 151 LTNAKRYTKDNIEENIIDFHNNDNLIIKGNNLIVLHSLKVKYQSSIKCVFIDPPY----- 205

Query: 55  GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI 114
              Y  D    D     ++      ++  F +  L   + ++  +G +++  S      +
Sbjct: 206 ---YFHDTKPADTF--IYNSNFKLSSWLVFMKNRLEIAKDLMCSDGVIYITISDDGAHYL 260

Query: 115 GTMLQNL 121
             ++  +
Sbjct: 261 KVLMDQV 267


>gi|270708934|ref|ZP_06223129.1| Type III restriction-modification system EcoPI enzyme mod
           [Haemophilus influenzae HK1212]
 gi|270315731|gb|EFA27877.1| Type III restriction-modification system EcoPI enzyme mod
           [Haemophilus influenzae HK1212]
          Length = 122

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 7/52 (13%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYN 50
                    ENQNS    ++ +I+G+++ VL+ L       + +I+ DPPYN
Sbjct: 75  EDIEHNQKPENQNS----ENILIQGDNLEVLKHLKHAYKNQIKMIYIDPPYN 122


>gi|269797512|ref|YP_003311412.1| DNA methylase N-4/N-6 domain protein [Veillonella parvula DSM 2008]
 gi|269094141|gb|ACZ24132.1| DNA methylase N-4/N-6 domain protein [Veillonella parvula DSM 2008]
          Length = 646

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 59/169 (34%), Gaps = 24/169 (14%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQ----LNG 55
           + N L  N+N  +++      I G+++  L  L       +  I+ DPPYN       N 
Sbjct: 84  EHNRLDKNKNSENVY------IIGDNLEALRHLLGSYIGKIKCIYIDPPYNTGEDFIYND 137

Query: 56  QLYRPDHSLVDAVTDSW---------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
                   LVD +             +  SS  A+  F    L+  R +L+ +G +++  
Sbjct: 138 SFTFTADDLVDRIGIDRQEAERILDLNGKSSHSAWLTFMYPRLVLARLLLREDGVIFISI 197

Query: 107 SYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
             +    +  +   +        D+    +    +++     N H  + 
Sbjct: 198 DDNEYANLKQICDEIFGEENFQADVAVVANPGGRDYKNIAITNEHLLIY 246



 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 47/146 (32%), Gaps = 20/146 (13%)

Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
              K  GY     + KA  +   + +        G+        E      K   L+ + 
Sbjct: 359 RKKKNGGYNIYEKSRKATTKAKSLWNGVGYRTEDGTRSFNELFEESYFDHPKSPELIKQC 418

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGI-------EMKQDY------ 257
           L+      DI+LD F GS T+     +L       R +I +       E +  Y      
Sbjct: 419 LIIGMSEDDIVLDFFSGSATTAEAIMQLNASDLGNRKYILVQLPESINEKELAYGAGYRT 478

Query: 258 -IDIATKRIASVQPLGNIELTVLTGK 282
             +I  +RI+      N E  V   K
Sbjct: 479 IDEIGRERISRAAKKINQEYGVDIDK 504


>gi|152978325|ref|YP_001343954.1| ribosomal protein L11 methyltransferase [Actinobacillus
           succinogenes 130Z]
 gi|171704236|sp|A6VM22|PRMA_ACTSZ RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|150840048|gb|ABR74019.1| ribosomal protein L11 methyltransferase [Actinobacillus
           succinogenes 130Z]
          Length = 293

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 53/152 (34%), Gaps = 11/152 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   IP  +    + +     G   HPT    AL    
Sbjct: 95  WEREWMDNFHPMQFGKRLWICPSWREIPDPNAVNVMLDPGLAFGTGTHPTT---ALCLEW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG     A KL  ++ IGI++    I  +    ++ Q  G  +
Sbjct: 152 LDGLDLTGKTVIDFGCGSGILAIAALKLGAKNAIGIDIDPQAILASG---SNAQANGVAD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQ-PGQILT 306
              L     +P      +V   ++  P + L 
Sbjct: 209 RLQLFLSDRQPADLKADVVVANILAGPLKELY 240


>gi|302392143|ref|YP_003827963.1| DNA methylase N-4/N-6 domain protein [Acetohalobium arabaticum DSM
           5501]
 gi|302204220|gb|ADL12898.1| DNA methylase N-4/N-6 domain protein [Acetohalobium arabaticum DSM
           5501]
          Length = 868

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 10/115 (8%)

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
            P+P    +   Y        D   R  ++  I        +   +  + T+ P   +  
Sbjct: 42  CPNPYLDDFIGEYGTEYDPESDDYERKPFVGDIKESKRDSISLAHK--YVTKVPYKAIMY 99

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM-KQDYIDIATKRIASVQ 269
            ++  TKPGDI+ D F GSG +G  A+         E   ++       R+ SV+
Sbjct: 100 FIMHYTKPGDIVFDGFAGSGMTGIAAQM-------CENPSEEMQKKIEDRLDSVE 147



 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 57/182 (31%), Gaps = 25/182 (13%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF---------------S 76
           L  +P  S D ++ DPP+   L        +S ++ +TDSW +                 
Sbjct: 471 LSMIPENSFDYMYIDPPFGSNL-------MYSELNFLTDSWLQVIENNNSEAIINSVQNK 523

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYH--NIFRIGTMLQNLNFWILNDIVWRK 133
               Y+           R+LKPN  +     +       +I   L    F I    V  K
Sbjct: 524 DLVDYNNLMEQSFKEFYRILKPNRWITIEFNNSKATIWNKIQESLTRAGFIIAQVAVLDK 583

Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
            +             ++ +I A    K     F   A +    D   +    +P+ +  E
Sbjct: 584 DSGSFVSNVSPGAVKNDLIINAYKPKKEFEDKFLKTAGEGLEADFIRQQLEHLPVEANIE 643

Query: 194 RL 195
           R 
Sbjct: 644 RT 645


>gi|291326559|ref|ZP_06124994.2| ribosomal protein L11 methyltransferase [Providencia rettgeri DSM
           1131]
 gi|291313550|gb|EFE54003.1| ribosomal protein L11 methyltransferase [Providencia rettgeri DSM
           1131]
          Length = 319

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 10/131 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    +L  + 
Sbjct: 120 WEREWMDNFHPMRFGERLWICPSWRDVPDPTAVNVMLDPGLAFGTGTHPTT---SLCLQW 176

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG     A KL     IGI++    I  +     + Q  G  E
Sbjct: 177 LDGLDLEGKTVIDFGCGSGILAIAALKLGAAHAIGIDIDPQAITASRD---NAQRNGVSE 233

Query: 276 LTVLTGKRTEP 286
              L   + +P
Sbjct: 234 RLSLYLPKDQP 244


>gi|261344929|ref|ZP_05972573.1| ribosomal protein L11 methyltransferase [Providencia rustigianii
           DSM 4541]
 gi|282567070|gb|EFB72605.1| ribosomal protein L11 methyltransferase [Providencia rustigianii
           DSM 4541]
          Length = 294

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 49/144 (34%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    +L    
Sbjct: 95  WEREWMDNFHPMRFGQRLWICPSWRDVPDPTAVNVMLDPGLAFGTGTHPTT---SLCLEW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG     A KL     IGI++    I  +     + +  G  E
Sbjct: 152 LDGIDLEGKTVIDFGCGSGILAIAALKLGAAHAIGIDIDPQAITASRD---NAERNGVSE 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L   + +P+     +V   ++
Sbjct: 209 RLSLYLAKDQPQDLQADVVVANIL 232


>gi|298737028|ref|YP_003729558.1| type III restriction-modification system: methylase [Helicobacter
           pylori B8]
 gi|298356222|emb|CBI67094.1| type III restriction-modification system: methylase [Helicobacter
           pylori B8]
          Length = 470

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 40/114 (35%), Gaps = 17/114 (14%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
           ++Q +  E    +IK  +   L  L     +++D I+ DPPYN Q N  +Y  +      
Sbjct: 366 KSQFNEDEINGTLIKSENYQALNSLKNRYKEAIDCIYIDPPYNTQNNEFVYADNFKRSS- 424

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
                        + +     L     +L   G ++V    +       ++  +
Sbjct: 425 -------------WLSMMENRLELAHALLSDKGVVFVSIDDNEQAYCKALMDEV 465


>gi|251791403|ref|YP_003006124.1| ribosomal protein L11 methyltransferase [Dickeya zeae Ech1591]
 gi|247540024|gb|ACT08645.1| ribosomal protein L11 methyltransferase [Dickeya zeae Ech1591]
          Length = 295

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 10/131 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    +L  + 
Sbjct: 95  WEREWMENFHPMQFGKRLWICPSWRDVPDPNAVNVMLDPGLAFGTGTHPTT---SLCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG     A KL     IGI++    I  +     + Q  G  E
Sbjct: 152 LDGLDLDGKTVIDFGCGSGILAIAALKLGAAHAIGIDIDPQAIQASRD---NAQRNGVSE 208

Query: 276 LTVLTGKRTEP 286
              L   + +P
Sbjct: 209 RLELYLPKDQP 219


>gi|52424588|ref|YP_087725.1| ribosomal protein L11 methyltransferase [Mannheimia
           succiniciproducens MBEL55E]
 gi|60390343|sp|Q65V70|PRMA_MANSM RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|52306640|gb|AAU37140.1| PrmA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 293

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 60/186 (32%), Gaps = 14/186 (7%)

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD-- 199
           G   +N    +         + +  N+  ++         S   +P  +    + +    
Sbjct: 77  GHLDENTAYKIEQIEDKDWEREWMDNFHPMQFGKRLWICPSWREVPDPNAVNVMLDPGLA 136

Query: 200 -GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDY 257
            G   HPT    AL    L      G  ++D   GSG     A KL  +  IGI++    
Sbjct: 137 FGTGTHPTT---ALCLEWLDGLDLAGKTVIDFGCGSGILAIAALKLGAKEAIGIDIDPQA 193

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ-PGQILTNAQGNISATV 316
           I  +     + +  G  +   L     +P      +V   ++  P + L      IS  V
Sbjct: 194 ILASRN---NAEQNGVADRLKLYLSEDKPANMKAEVVVANILAGPLKELYPV---ISELV 247

Query: 317 CADGTL 322
              G L
Sbjct: 248 KEKGNL 253


>gi|71894184|ref|YP_278292.1| putative type III restriction-modification system: methylase
           [Mycoplasma synoviae 53]
          Length = 436

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 59/172 (34%), Gaps = 13/172 (7%)

Query: 43  IFADPPYNLQ---LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99
           ++ DPPYN +    +G     ++ L+ A    +    S   +       L   +++LK  
Sbjct: 1   MYIDPPYNTESAFADGNSISNNNELISASKFIYRDKFSRNGWLNMMYERLQLAKKLLKET 60

Query: 100 GTLWVIGSYHNIFRIGTMLQNLNFW-----ILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
           G ++V    +    +  ++  +         ++ I  R      +F  +  +N    L++
Sbjct: 61  GIIFVSIDDNEQAYLKVLMDQIFGEENFIANISWIKKRGPGSNTSFINKVVKNCEYILMY 120

Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
           A    +     +    L+   +      D         ER   K  +  HP+
Sbjct: 121 AKNYNEDTQIGYKIHDLEKLKKLGYTNKDEFF-----EERGFYKLADLHHPS 167



 Score = 43.4 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           G E +   + + +    KP  L+  +L  S      +LD F G GT+G   + L 
Sbjct: 271 GKEIIEIFENKNVFDFPKPPDLIKYLLSFSNNKNARVLDFFAGGGTTGHAVEDLN 325


>gi|167908460|ref|ZP_02495665.1| DNA methylase [Burkholderia pseudomallei NCTC 13177]
          Length = 45

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           F GSGT  A A++    ++G E    Y  IA+ R+ + 
Sbjct: 2   FAGSGTFLAAAREAGLHWVGCETNATYHVIASARLDAA 39


>gi|37525699|ref|NP_929043.1| 23S rRNA m(2)G2445 methyltransferase [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|81834008|sp|Q7N612|RLML_PHOLL RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|36785128|emb|CAE14057.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 705

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 22/140 (15%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++I+ + ++ L +   +  DLIF DPP         +     + D   
Sbjct: 579 NLQANELTGRQHRLIQADCLAWLAR-ANEQFDLIFIDPP--------TFSNSKRMEDTFD 629

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
              D               +   +R+L+  GTL    +          L+ +   ++ + 
Sbjct: 630 VQRDHIM-----------LMRQLKRLLRRGGTLMFSNNKRGFKMDFAELEKVG--LVAEE 676

Query: 130 VWRKSNPMPNFRGRRFQNAH 149
           +  K+      R R+  N  
Sbjct: 677 ITSKTQSQDFARNRQIHNCW 696


>gi|402180|emb|CAA52629.1| cfr9IM [Citrobacter freundii]
          Length = 43

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           T G V ++  R ++GIE+  +Y+DIA  R+ 
Sbjct: 1   TVGVVCQQEDRQYVGIELNPEYVDIAVNRLQ 31


>gi|320104895|ref|YP_004180486.1| DNA methylase N-4/N-6 domain-containing protein [Isosphaera pallida
           ATCC 43644]
 gi|319752177|gb|ADV63937.1| DNA methylase N-4/N-6 domain protein [Isosphaera pallida ATCC
           43644]
          Length = 1078

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 69/209 (33%), Gaps = 20/209 (9%)

Query: 103 WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI-----WASP 157
           W  G      + G  +++L+F I N +   +  P      R  ++  ETLI     +   
Sbjct: 649 WAPGDLMANVKGGRYVESLHFAITNPVTGEEHFPGSGGNWRFSKDTIETLIKNNEIYFGE 708

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE-KLHPTQKPEALLSRI 216
             K +     +              D++     GS  + +  G        KP   +   
Sbjct: 709 DGKGRPKLKRFLCDVKDGVTWTTLWDFVPLNTQGSSEMSDLLGSITAFENPKPVGYIEEF 768

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYIDIA-TKRIASVQ 269
           L  ++     + D F GSGT+G     L       R FI +EM  DY D     R+  V 
Sbjct: 769 LRLTSDLNSPVSDFFAGSGTTGHAVINLNREDGGRRKFILVEM-ADYFDTVLLPRLKKV- 826

Query: 270 PLGNIELTVLTGKRTEPRVAFNLLVERGL 298
                        R   R+     +ERG 
Sbjct: 827 ----AFTPEWKDGR-PKRLPTAEEIERGP 850



 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 52/190 (27%), Gaps = 20/190 (10%)

Query: 23  IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +    +   L  + A   + V  ++ DPPYN   +G LYR             D F    
Sbjct: 495 LFHSENFQALSLMQARYREKVKCVYIDPPYNTGEDGFLYR-------------DNFQH-S 540

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           ++  +    L      L   G + V      + R+  ++ ++   +              
Sbjct: 541 SWLTYITDRLNMGWASLSAIGAMSVSVDDAEVSRLRMLMDSIFGDLRFVEHIIWKKRSTP 600

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
              +     HE  +      + +   F               +    P   G      K 
Sbjct: 601 PNDKVLGAQHEYALVYCKGTQKESLAFRQRTDAQLARYRNPDNHPKGPWAPGDLMANVKG 660

Query: 200 G---EKLHPT 206
           G   E LH  
Sbjct: 661 GRYVESLHFA 670


>gi|73542072|ref|YP_296592.1| hypothetical protein Reut_A2386 [Ralstonia eutropha JMP134]
 gi|72119485|gb|AAZ61748.1| conserved hypothetical protein [Ralstonia eutropha JMP134]
          Length = 459

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 4/81 (4%)

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
             L  R          ++LDPF G    G VA +L R ++G+E++ + ++    ++  VQ
Sbjct: 229 CELAYR---WFCPADGLVLDPFAGGSVRGIVAARLGRPYVGMELRPEQVEANRGQLHLVQ 285

Query: 270 PLGNIE-LTVLTGKRTEPRVA 289
                    V   ++   R+ 
Sbjct: 286 THDPAPVWHVGDSRQIARRLP 306


>gi|260914497|ref|ZP_05920966.1| ribosomal protein L11 methyltransferase [Pasteurella dagmatis ATCC
           43325]
 gi|260631598|gb|EEX49780.1| ribosomal protein L11 methyltransferase [Pasteurella dagmatis ATCC
           43325]
          Length = 293

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 54/170 (31%), Gaps = 11/170 (6%)

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD-- 199
               +N+   +         + +  N+  ++         S   +P  S    + +    
Sbjct: 77  NYLNENSAYKIEQIEDKDWEREWMDNFHPMQFGKRLWICPSWREVPDESAVNVMLDPGLA 136

Query: 200 -GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDY 257
            G   HPT    AL    L S       ++D   GSG     A KL     +GI++    
Sbjct: 137 FGTGTHPTT---ALCLEWLDSLDLKDKTVIDFGCGSGILAIAALKLGAKSAVGIDIDPQA 193

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ-PGQILT 306
           I  +     + +  G  +   L     +P      +V   ++  P + L 
Sbjct: 194 ILASRN---NAEQNGVADKLQLFLSADKPVDLKADVVVANILAGPLKELY 240


>gi|303253041|ref|ZP_07339193.1| ribosomal protein L11 methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307248581|ref|ZP_07530596.1| Ribosomal protein L11 methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|302648105|gb|EFL78309.1| ribosomal protein L11 methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306854931|gb|EFM87119.1| Ribosomal protein L11 methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 293

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 57/167 (34%), Gaps = 12/167 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    AL  + 
Sbjct: 95  WEREWMDNFHPMQFGKRLWICPSWREVPDSNAVNVMLDPGLAFGTGTHPTT---ALCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S       ++D   GSG     A KL  +  IGI++    I  +     + +  G  +
Sbjct: 152 LDSLDLTSKTVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAILASGN---NAEANGVAD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
              L   + +P+     +V   ++     L     NI   V   G L
Sbjct: 209 RLQLFLAKDQPQDLQADVVVANIL--AGPLKELAPNIITLVKPQGDL 253


>gi|260913816|ref|ZP_05920291.1| N6-adenine-specific DNA methytransferase [Pasteurella dagmatis ATCC
           43325]
 gi|260632129|gb|EEX50305.1| N6-adenine-specific DNA methytransferase [Pasteurella dagmatis ATCC
           43325]
          Length = 718

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 20/109 (18%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N +   + K+I+ + +  LE+   +  DLIF DPP              S    + DSWD
Sbjct: 599 NDLEGKQHKLIQADCLQWLERC-DRQFDLIFVDPP------------TFSNSKRMEDSWD 645

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                          +   +R+L+PNGT+    +          L  L 
Sbjct: 646 VQRDHI-------KLMTNLKRILRPNGTIVFSNNKRGFKMDFDGLNELG 687


>gi|260774377|ref|ZP_05883291.1| ribosomal protein L11 methyltransferase [Vibrio metschnikovii CIP
           69.14]
 gi|260610504|gb|EEX35709.1| ribosomal protein L11 methyltransferase [Vibrio metschnikovii CIP
           69.14]
          Length = 295

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 58/163 (35%), Gaps = 21/163 (12%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  +K         S   IP  +    L +     G   HPT    AL  + 
Sbjct: 96  WEREWMDNFHPMKFGERLWICPSWRDIPDPNAVNVLLDPGLAFGTGTHPTT---ALCLQW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIAT---KR-------- 264
           L S    G  ++D   GSG     A KL     IGI++    +  +    +R        
Sbjct: 153 LDSLDLSGKTVIDFGCGSGILAIAAIKLGAAKVIGIDIDPQALQASRDNAERNGVADKIE 212

Query: 265 --IASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL 305
             +   QP   +   ++      P    + +++  LI+PG +L
Sbjct: 213 VYLPQNQPENLVADVLVANILAGPLRELSAVIKS-LIKPGGLL 254


>gi|251794328|ref|YP_003009059.1| hypothetical protein Pjdr2_0292 [Paenibacillus sp. JDR-2]
 gi|247541954|gb|ACS98972.1| conserved hypothetical protein [Paenibacillus sp. JDR-2]
          Length = 436

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 17/107 (15%)

Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
           K ++  Y    +AN++ +   +   PI  G      +                 ++    
Sbjct: 10  KDWSTEYKGFVSANKNKKKSVNRWYPILEGFSNSFVES----------------VINEQC 53

Query: 222 KPGD-IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           K  + I LDPF G GT+  VA++L       E+      +   ++ +
Sbjct: 54  KTNNLICLDPFAGGGTTPLVAQELGVKCYSFEVSPFMSQVCRAKLRN 100



 Score = 43.8 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 4/44 (9%)

Query: 6   SLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY 49
           S +IN+  N+    ++  I G+   ++ +L    +DL+   PPY
Sbjct: 233 SSSINKQINN----QNYFINGDCRDLVGELNDNELDLVITSPPY 272


>gi|269928743|ref|YP_003321064.1| hypothetical protein Sthe_2829 [Sphaerobacter thermophilus DSM
           20745]
 gi|269788100|gb|ACZ40242.1| protein of unknown function DUF1156 [Sphaerobacter thermophilus DSM
           20745]
          Length = 984

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 53/178 (29%), Gaps = 34/178 (19%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY--NLQL---NGQLYRPDHSLVDAVTDSWD---- 73
           I +G++   L  +   SV L+  DPPY  N+Q    +   Y      V  +   W     
Sbjct: 537 ITQGDAAD-LSTVATGSVHLVCIDPPYYDNVQYSELSDFFYVWLKRTVGDLYPDWFRAEL 595

Query: 74  ------------KFSSF---------EAYDAFTRAWLLACRRVLKPNGTL---WVIGSYH 109
                       +F+ F         + Y+    A    C RVL+P+G L   +      
Sbjct: 596 TDKDDEAVANPARFADFGRKRRDLARQDYERKMAAIFRECHRVLRPDGVLTVMFTHKQVE 655

Query: 110 NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
               +   L    F I         +     + ++   A   L+            + 
Sbjct: 656 AWDTLAMALIAAGFRIEASWPIHTESEHSLHQAKKNAAASTILLVCRKRQAVGEPVWW 713


>gi|295108151|emb|CBL22104.1| DNA methylase./Putative RNA methylase family UPF0020. [Ruminococcus
           obeum A2-162]
          Length = 387

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVS-STKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           E+         +P +  E++   ++ +   KPG  I+DPF GSGT+   AKK     +G+
Sbjct: 24  EKQDEISSLHPYPARFIESIPRSLIDALGVKPGTSIMDPFCGSGTTLLEAKKRGIDSVGV 83

Query: 252 EMKQDYIDIAT 262
           ++      I+ 
Sbjct: 84  DLNPIACLISK 94


>gi|294795100|ref|ZP_06760235.1| type III restriction-modification system EcoPI, modification
           subunit [Veillonella sp. 3_1_44]
 gi|294454462|gb|EFG22836.1| type III restriction-modification system EcoPI, modification
           subunit [Veillonella sp. 3_1_44]
          Length = 653

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 59/168 (35%), Gaps = 24/168 (14%)

Query: 5   NSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG------ 55
               ++EN+NS   +    I G+++  L  L       +  I+ DPPYN   +       
Sbjct: 91  EHNRLDENKNSENVY----IIGDNLEALRHLLGSYIGKIKCIYIDPPYNTGEDFIYNDSF 146

Query: 56  --------QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
                   +    D    + + D   K SS  A+  F    L+  R +L+ +G +++   
Sbjct: 147 AFTADDLVERIGIDRQEAERILDLNGK-SSHSAWLTFMYPRLVLARLLLREDGVIFISID 205

Query: 108 YHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
            +    +  +   +        D+    +    +++     N H  + 
Sbjct: 206 DNEYANLKQICDEIFGEENFQADVAVVANPGGRDYKNIAITNEHLLIY 253



 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 47/146 (32%), Gaps = 20/146 (13%)

Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
              K  GY     + KA  +   + +        G+        E      K   L+ + 
Sbjct: 366 RKKKNGGYNIYEKSRKATTKAKSLWNGVGYRTEDGTRSFNELFEESYFDHPKSPELIKQC 425

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGI-------EMKQDYI----- 258
           L+      DI+LD F GS T+     +L       R +I +       E +  Y      
Sbjct: 426 LIIGMSEDDIVLDFFSGSATTAEAIMQLNASDLGNRKYILVQLPEPINEKELAYSAGYRT 485

Query: 259 --DIATKRIASVQPLGNIELTVLTGK 282
             +I  +RI+      + E  V   K
Sbjct: 486 IDEIGRERISRAAKKIDQEYGVDIDK 511


>gi|119509095|ref|ZP_01628246.1| hypothetical protein N9414_04820 [Nodularia spumigena CCY9414]
 gi|119466261|gb|EAW47147.1| hypothetical protein N9414_04820 [Nodularia spumigena CCY9414]
          Length = 423

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 2/75 (2%)

Query: 183 DWLIPICSGSERLRNKDGEKLHPT--QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           D+ + +      + NK    +     Q    L+  +L+        ILDPF GSGT+   
Sbjct: 22  DFNVVLPQNHLNIENKTRSNIFSWRGQFSPQLIENLLLYYCPKQAKILDPFAGSGTTLYE 81

Query: 241 AKKLRRSFIGIEMKQ 255
           A     +  G E+  
Sbjct: 82  AACFGLTVSGCEVNP 96



 Score = 38.0 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 14/88 (15%)

Query: 35  LPAKSVDLIFADPPY-NLQLNGQLYR-------------PDHSLVDAVTDSWDKFSSFEA 80
           +   S+D +   PPY N+    Q YR                 +     +  ++F +   
Sbjct: 220 IDNDSIDFVITSPPYINVFNYHQNYRVSAETLGWDLLKIAKSEIGSNRANRKNRFFTVVQ 279

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSY 108
           Y       L   +RV   +  +  +  +
Sbjct: 280 YCLDMAFVLRELQRVCTYDARIIFVVGH 307


>gi|325579239|ref|ZP_08149195.1| ribosomal protein L11 methyltransferase [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325159474|gb|EGC71608.1| ribosomal protein L11 methyltransferase [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 295

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 55/166 (33%), Gaps = 11/166 (6%)

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEK 202
           +N    +         + +  N+  ++         S   +P  +    + +     G  
Sbjct: 81  ENTAYKIEQIEDKDWEREWMDNFHPMQFGKRLWICPSWREVPDQNAVNVMLDPGLAFGTG 140

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIA 261
            HPT    AL    L      G  ++D   GSG     A KL  ++ IGI++    I  +
Sbjct: 141 THPTT---ALCLEWLDGLDLTGKTVIDFGCGSGILAIAALKLGAKNAIGIDIDPQAILAS 197

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ-PGQILT 306
                + +  G  +   L     +P      +V   ++  P + L 
Sbjct: 198 RN---NAEQNGVADRLQLFLSDDKPADLKADVVVANILAGPLKELY 240


>gi|330723415|gb|AEC45785.1| Site-specific DNA-methyltransferase, Adenine-specific [Mycoplasma
           hyorhinis MCLD]
          Length = 374

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 51/129 (39%), Gaps = 9/129 (6%)

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
           +  ++ + +   + + +            +++    S+      S +E       +    
Sbjct: 155 RKQYQFVKFNPKTFEIETQVAGRRFNNVIDKNYNRLSNGFYTTKSANEITEVLFDKTAFN 214

Query: 206 TQKPEALLSRILVSSTKPGDI-ILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYI 258
             KP  L+  ++   +   D+ +LD F GSGT+G    +L       RSF+ +   ++ I
Sbjct: 215 FAKPVGLMKYLINLFSDKKDMRVLDFFAGSGTTGQAVLELNKEDGGNRSFVLVTNNENNI 274

Query: 259 --DIATKRI 265
             ++  +R+
Sbjct: 275 GQNVTYERL 283


>gi|307262021|ref|ZP_07543676.1| Ribosomal protein L11 methyltransferase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306868304|gb|EFN00126.1| Ribosomal protein L11 methyltransferase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 293

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 58/167 (34%), Gaps = 12/167 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    AL  + 
Sbjct: 95  WEREWMDNFHPMQFGKRLWICPSWREVPDSNAVNVMLDPGLAFGTGTHPTT---ALCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG     A KL  +  IGI++    I  +     + +  G  +
Sbjct: 152 LDSLDLTGKTVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAILASGN---NAEANGVAD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
              L   + +P+     +V   ++     L     NI   V   G L
Sbjct: 209 RLQLFLAKDQPQDLQADVVVANIL--AGPLKELAPNIITLVKPQGDL 253


>gi|307257608|ref|ZP_07539368.1| Ribosomal protein L11 methyltransferase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306863911|gb|EFM95834.1| Ribosomal protein L11 methyltransferase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 316

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 58/167 (34%), Gaps = 12/167 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    AL  + 
Sbjct: 118 WEREWMDNFHPMQFGKRLWICPSWREVPDSNAVNVMLDPGLAFGTGTHPTT---ALCLQW 174

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG     A KL  +  IGI++    I  +     + +  G  +
Sbjct: 175 LDSLDLTGKTVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAILASGN---NAEANGVAD 231

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
              L   + +P+     +V   ++     L     NI   V   G L
Sbjct: 232 RLQLFLAKDQPQDLQADVVVANIL--AGPLKELAPNIITLVKPQGDL 276


>gi|307246456|ref|ZP_07528529.1| Ribosomal protein L11 methyltransferase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307255439|ref|ZP_07537246.1| Ribosomal protein L11 methyltransferase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307259891|ref|ZP_07541605.1| Ribosomal protein L11 methyltransferase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306852660|gb|EFM84892.1| Ribosomal protein L11 methyltransferase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306861623|gb|EFM93610.1| Ribosomal protein L11 methyltransferase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306866061|gb|EFM97935.1| Ribosomal protein L11 methyltransferase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 293

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 58/167 (34%), Gaps = 12/167 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    AL  + 
Sbjct: 95  WEREWMDNFHPMQFGKRLWICPSWREVPDSNAVNVMLDPGLAFGTGTHPTT---ALCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG     A KL  +  IGI++    I  +     + +  G  +
Sbjct: 152 LDSLDLTGKTVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAILASGN---NAEANGVAD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
              L   + +P+     +V   ++     L     NI   V   G L
Sbjct: 209 RLQLFLAKDQPQDLQADVVVANIL--AGPLKELAPNIITLVKPQGDL 253


>gi|165976967|ref|YP_001652560.1| ribosomal protein L11 methyltransferase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|226705031|sp|B0BRD1|PRMA_ACTPJ RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|165877068|gb|ABY70116.1| ribosomal protein L11 methyltransferase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 293

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 58/167 (34%), Gaps = 12/167 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    AL  + 
Sbjct: 95  WEREWMDNFHPMQFGKRLWICPSWREVPDSNAVNVMLDPGLAFGTGTHPTT---ALCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG     A KL  +  IGI++    I  +     + +  G  +
Sbjct: 152 LDSLDLTGKTVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAILASGN---NAEANGVAD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
              L   + +P+     +V   ++     L     NI   V   G L
Sbjct: 209 RLQLFLAKDQPQDLQADVVVANIL--AGPLKELAPNIITLVKPQGDL 253


>gi|71274947|ref|ZP_00651235.1| conserved hypothetical protein [Xylella fastidiosa Dixon]
 gi|71901570|ref|ZP_00683652.1| conserved hypothetical protein [Xylella fastidiosa Ann-1]
 gi|170729774|ref|YP_001775207.1| hypothetical protein Xfasm12_0572 [Xylella fastidiosa M12]
 gi|71164679|gb|EAO14393.1| conserved hypothetical protein [Xylella fastidiosa Dixon]
 gi|71728656|gb|EAO30805.1| conserved hypothetical protein [Xylella fastidiosa Ann-1]
 gi|167964567|gb|ACA11577.1| conserved hypothetical protein [Xylella fastidiosa M12]
          Length = 51

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           P  GSGT+G  A + +  FIG+ +   Y D+A +R++ 
Sbjct: 3   PLAGSGTTGVAALRAKHRFIGMALSLVYSDVAKQRLSD 40


>gi|113477648|ref|YP_723709.1| hypothetical protein Tery_4236 [Trichodesmium erythraeum IMS101]
 gi|110168696|gb|ABG53236.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101]
          Length = 934

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 65/208 (31%), Gaps = 38/208 (18%)

Query: 21  DKIIKGNSI--SVLEKLPAKSVDLIFADPPY----------------------------- 49
           +K I+ +S     L  +   SVD I  DPPY                             
Sbjct: 500 NKTIQIDSASADTLYHISDNSVDAIITDPPYYATIQYAELSDFFYVWQRRVLGDIFPDLY 559

Query: 50  --NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIG 106
              L    +    + S    +  S D+ ++ + Y+A          RVL+ +G +     
Sbjct: 560 LTELTDKDREAVANPSRFRNMGTSPDELAN-QDYEAKIALAFAEHYRVLRDDGVMTVQFN 618

Query: 107 SYHN--IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ-NAHETLIWASPSPKAKG 163
              +     +   L +  F I         NP    + ++   ++   L+     P A  
Sbjct: 619 HKESGAWDVLAKSLIDAGFEITASWAVSTENPQNLHQAKKNSVSSTVLLVCRKRDPNAPQ 678

Query: 164 YTFNYDALKAANEDVQMRSDWLIPICSG 191
             ++    + AN+  +   D+     +G
Sbjct: 679 AWWDDLQPEVANQVEERAPDFEKNDITG 706


>gi|331266046|ref|YP_004325676.1| modification methylase [Streptococcus oralis Uo5]
 gi|326682718|emb|CBZ00335.1| modification methylase [Streptococcus oralis Uo5]
          Length = 423

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 18/92 (19%)

Query: 204 HPTQKPEALLSRILVSSTKPGD---IILDPFFGSGTSGAVAKKLRRSFIGIEMKQ----- 255
           +P      +   ++            ILDPF GSGT+    +K   S IGI++       
Sbjct: 34  YPATMVPDMQYELIKLIKSEDLSITNILDPFHGSGTTLVEGEKNNLSPIGIDINPLANLI 93

Query: 256 ----------DYIDIATKRIASVQPLGNIELT 277
                      YIDIA  RI       + E  
Sbjct: 94  TKVKLQGVNKKYIDIANNRIEKFLKSDSFEFD 125



 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 4/54 (7%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
            +L  + + SVDLI   PPY        Y         +   W      E++D 
Sbjct: 232 DILFGMKSDSVDLIVTSPPYGDNSTTVTYGQ----YSMLPIYWIDRKDMESFDE 281


>gi|88601443|ref|YP_501621.1| putative RNA methylase [Methanospirillum hungatei JF-1]
 gi|88186905|gb|ABD39902.1| N2-methylguanosine tRNA methyltransferase [Methanospirillum
           hungatei JF-1]
          Length = 317

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 192 SERLRNKDGEK--LHPTQKPEALLSRILV-SSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
           S     K G +   HP      ++  ++  S   PG+ ILDPF G+G +   A  +  + 
Sbjct: 142 SPYHTRKPGNRPFFHPGVMMPRMIRALINMSGALPGEWILDPFCGTGGTLIEASLIGCNA 201

Query: 249 IGIEMKQDYIDIATKRIASV 268
            G +  ++ I  + K +++ 
Sbjct: 202 AGTDADREMIAGSRKNLSAA 221


>gi|256811132|ref|YP_003128501.1| Methyltransferase type 11 [Methanocaldococcus fervens AG86]
 gi|256794332|gb|ACV25001.1| Methyltransferase type 11 [Methanocaldococcus fervens AG86]
          Length = 279

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 47/141 (33%), Gaps = 35/141 (24%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
            IN     +F+   KII G++  V++    +  D++  DPP    L G LY         
Sbjct: 164 KINPYSEDLFKGNIKIILGDAFDVIKNFKDEEFDVVIHDPP-RFSLAGHLY--------- 213

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
                            +  +     RVLKP G L+          +G   +      L 
Sbjct: 214 -----------------SEEFYKEIFRVLKPGGRLF--------HYVGNPGKKYRGKDLQ 248

Query: 128 DIVWRKSNPMPNFRGRRFQNA 148
             V  +   +     RR +NA
Sbjct: 249 RGVMERLRKVGFVNVRRVENA 269


>gi|224502231|ref|ZP_03670538.1| hypothetical protein LmonFR_06874 [Listeria monocytogenes FSL
          R2-561]
 gi|255030197|ref|ZP_05302148.1| hypothetical protein LmonL_15936 [Listeria monocytogenes LO28]
          Length = 37

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 19/32 (59%)

Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ 52
          +KI+  + ++ + K+   S+D+I  D PY + 
Sbjct: 3  NKILNEDCLTGMLKIKDNSIDMILCDLPYEIH 34


>gi|322834711|ref|YP_004214738.1| ribosomal protein L11 methyltransferase [Rahnella sp. Y9602]
 gi|321169912|gb|ADW75611.1| ribosomal protein L11 methyltransferase [Rahnella sp. Y9602]
          Length = 294

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 50/144 (34%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    A+  + 
Sbjct: 95  WEREWMDNFHPMRFGERLWICPSWRDVPDPNAVNVMLDPGLAFGTGTHPTT---AMCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S       ++D   GSG     A KL  +  +GI++    I  +     + +  G  E
Sbjct: 152 LDSLDLTDKTVIDFGCGSGILAIAALKLGAKHVVGIDIDPQAIQASRD---NAERNGVSE 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L   + +P      +V   ++
Sbjct: 209 RLSLYLPKDQPDNLSADVVVANIL 232


>gi|119490435|ref|ZP_01622896.1| hypothetical protein L8106_27284 [Lyngbya sp. PCC 8106]
 gi|119453906|gb|EAW35061.1| hypothetical protein L8106_27284 [Lyngbya sp. PCC 8106]
          Length = 1099

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 45/133 (33%), Gaps = 29/133 (21%)

Query: 34  KLPAKSVDLIFADPPYNLQL----------------NGQLY----------RPDHSLVDA 67
            L ++S+D +  DPPY   +                 GQLY          + + ++++ 
Sbjct: 661 SLESESLDAVITDPPYFDSVPYADLSDFFYVWLKRSVGQLYPEHFSGKLTPKKNEAIMEP 720

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN---IFRIGTMLQNLNFW 124
                DK  + +AY+           RVLK +G + V+ ++        +   L+   F 
Sbjct: 721 SRHGGDKKKASQAYEDMMHQAFKEANRVLKSDGIMVVVYAHKTTAGWSTLIDSLRRAGFT 780

Query: 125 ILNDIVWRKSNPM 137
           I            
Sbjct: 781 ITEAWPLDTEMSS 793


>gi|255009723|ref|ZP_05281849.1| DNA methylase, putative [Bacteroides fragilis 3_1_12]
 gi|313147508|ref|ZP_07809701.1| DNA methylase [Bacteroides fragilis 3_1_12]
 gi|313136275|gb|EFR53635.1| DNA methylase [Bacteroides fragilis 3_1_12]
          Length = 377

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 49/139 (35%), Gaps = 12/139 (8%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK--------- 254
           +    P      ++   ++ GD I+DPF G  +S      L R  +GIE+          
Sbjct: 25  YYAMFPLDFAFDVVKKYSRKGDCIIDPFAGRCSSVFAGGVLGRVSLGIEINPVGWLYGKV 84

Query: 255 ---QDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
                +      R+  +    N     +       R+ F   V + L+   + L   + N
Sbjct: 85  KLKPAFKHEVLARLNDIYSKRNYFSQSIKKMPEFYRICFCDEVLKFLLAARKYLDWKENN 144

Query: 312 ISATVCADGTLISGTELGS 330
           + AT+ +   +    +LG 
Sbjct: 145 VDATLMSIILVYLHGKLGE 163



 Score = 38.4 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 15/129 (11%)

Query: 22  KIIKGNS----ISVLEKLP--AKSVDLIFADPPYNLQLNGQLYR-------PDHSLVDAV 68
           ++I G+S    + V  ++    K   L+F  PPY    +    +               +
Sbjct: 221 QVIFGDSTIKLVDVANEVKASNKKFSLLFTSPPYCSITDYHADQWLRIWMLGGSENPQYL 280

Query: 69  TDS-WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
            D    +F + + Y          C  ++K N T++V       F   T L+ L  +  N
Sbjct: 281 KDKHKGRFVNKQEYYNLLDNVFGLCAGIMKDNATVYVRTDARQ-FTFDTTLEILKKYFPN 339

Query: 128 DIVWRKSNP 136
             V  +  P
Sbjct: 340 HRVKIRKKP 348


>gi|172039169|ref|YP_001805670.1| CHP95-containing protein [Cyanothece sp. ATCC 51142]
 gi|171700623|gb|ACB53604.1| CHP95-containing protein [Cyanothece sp. ATCC 51142]
          Length = 182

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/28 (53%), Positives = 21/28 (75%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY 49
           ++IKG+S+ VL+ L  K  DLI+ DPPY
Sbjct: 91  QVIKGDSLKVLKTLDRKKFDLIYFDPPY 118


>gi|242398459|ref|YP_002993883.1| N2, N2-dimethylguanosine tRNA methyltransferase [Thermococcus
           sibiricus MM 739]
 gi|242264852|gb|ACS89534.1| N2, N2-dimethylguanosine tRNA methyltransferase [Thermococcus
           sibiricus MM 739]
          Length = 338

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 53/138 (38%), Gaps = 6/138 (4%)

Query: 163 GYTFNYDALKAANEDVQMRSDWL-IPICSGSERLRNKDGEKLHPTQKPEAL---LSRILV 218
           G+  N  +          +  W+ I   +   +   K      P  KP AL   L+R ++
Sbjct: 124 GFKVNLTSPDTLVRVYCGQKLWVGIRKQTFPAKSFEKRKADRRPFFKPIALPPRLARAMI 183

Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS--VQPLGNIEL 276
           +  +    +LDPF G+G     A  L     G+++++D +D A + +    ++     + 
Sbjct: 184 NLARAKKEVLDPFMGTGGILIEAGLLGLKVYGVDLRKDMVDGAKQNLEHYGIKNYVLKKG 243

Query: 277 TVLTGKRTEPRVAFNLLV 294
                 +  P   F  +V
Sbjct: 244 DATKLGKLFPDKEFEAIV 261



 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQ 52
           KG++  + +  P K  + I  DPPY   
Sbjct: 242 KGDATKLGKLFPDKEFEAIVTDPPYGTS 269


>gi|262192556|ref|ZP_06050706.1| ribosomal protein L11 methyltransferase [Vibrio cholerae CT
           5369-93]
 gi|262031601|gb|EEY50189.1| ribosomal protein L11 methyltransferase [Vibrio cholerae CT
           5369-93]
          Length = 295

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 56/163 (34%), Gaps = 21/163 (12%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P       + +     G   HPT    AL    
Sbjct: 96  WEREWMDNFHPMQFGRRLWICPSWREVPDPQAVNVMLDPGLAFGTGTHPTT---ALCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK---R-------- 264
           L +    G  ++D   GSG     A KL     IGI++    +  +     R        
Sbjct: 153 LDNLDLTGKTVIDFGCGSGILAIAAIKLGAAKVIGIDIDPQALLASKDNAARNGVEDQIE 212

Query: 265 --IASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL 305
             +   QP G +   V+      P    + ++ +GL++PG  L
Sbjct: 213 VYLPKDQPEGLVADVVVANILAGPLRELSPII-KGLLKPGGQL 254


>gi|121586350|ref|ZP_01676139.1| ribosomal protein L11 methyltransferase [Vibrio cholerae 2740-80]
 gi|153820015|ref|ZP_01972682.1| ribosomal protein L11 methyltransferase [Vibrio cholerae NCTC 8457]
 gi|153831236|ref|ZP_01983903.1| ribosomal protein L11 methyltransferase [Vibrio cholerae 623-39]
 gi|227080507|ref|YP_002809058.1| ribosomal protein L11 methyltransferase [Vibrio cholerae M66-2]
 gi|229506909|ref|ZP_04396417.1| ribosomal protein L11 methyltransferase [Vibrio cholerae BX 330286]
 gi|261210421|ref|ZP_05924715.1| ribosomal protein L11 methyltransferase [Vibrio sp. RC341]
 gi|298500926|ref|ZP_07010728.1| LSU ribosomal protein L11 methyltransferase [Vibrio cholerae MAK
           757]
 gi|254783322|sp|C3LQP9|PRMA_VIBCM RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|121549470|gb|EAX59498.1| ribosomal protein L11 methyltransferase [Vibrio cholerae 2740-80]
 gi|126509437|gb|EAZ72031.1| ribosomal protein L11 methyltransferase [Vibrio cholerae NCTC 8457]
 gi|148873279|gb|EDL71414.1| ribosomal protein L11 methyltransferase [Vibrio cholerae 623-39]
 gi|227008395|gb|ACP04607.1| ribosomal protein L11 methyltransferase [Vibrio cholerae M66-2]
 gi|229356014|gb|EEO20933.1| ribosomal protein L11 methyltransferase [Vibrio cholerae BX 330286]
 gi|260840479|gb|EEX67045.1| ribosomal protein L11 methyltransferase [Vibrio sp. RC341]
 gi|297540430|gb|EFH76489.1| LSU ribosomal protein L11 methyltransferase [Vibrio cholerae MAK
           757]
          Length = 295

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 56/163 (34%), Gaps = 21/163 (12%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P       + +     G   HPT    AL    
Sbjct: 96  WEREWMDNFHPMQFGRRLWICPSWREVPDPQAVNVMLDPGLAFGTGTHPTT---ALCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK---R-------- 264
           L +    G  ++D   GSG     A KL     IGI++    +  +     R        
Sbjct: 153 LDNLDLTGKTVIDFGCGSGILAIAAIKLGAAKVIGIDIDPQALLASKDNAARNGVEDQIE 212

Query: 265 --IASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL 305
             +   QP G +   V+      P    + ++ +GL++PG  L
Sbjct: 213 VYLPKDQPEGLVADVVVANILAGPLRELSPII-KGLLKPGGQL 254


>gi|319775089|ref|YP_004137577.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
           F3047]
 gi|329123000|ref|ZP_08251571.1| ribosomal protein L11 methyltransferase [Haemophilus aegyptius ATCC
           11116]
 gi|317449680|emb|CBY85886.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
           F3047]
 gi|327471931|gb|EGF17371.1| ribosomal protein L11 methyltransferase [Haemophilus aegyptius ATCC
           11116]
          Length = 294

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 57/182 (31%), Gaps = 14/182 (7%)

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEK 202
            N    +         + +  N+  ++         S   +P  +    + +     G  
Sbjct: 81  SNTAYKIEQIEDKDWEREWMDNFYPMQFGKRLWICPSWCDVPDENAVNVMLDPGLAFGTG 140

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYIDIA 261
            HPT    AL    L         ++D   GSG     A KL     +GI++    I  +
Sbjct: 141 THPTT---ALCLEWLDGLDLKDKTVIDFGCGSGILAIAALKLGAKSAVGIDIDPQAILAS 197

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ-PGQILTNAQGNISATVCADG 320
                + +  G  +   L     +P      +V   ++  P + L      IS  V  +G
Sbjct: 198 RN---NAEQNGVADRLQLFLSDEKPSDLKADVVVANILAGPLKELYPI---ISQLVKPNG 251

Query: 321 TL 322
            L
Sbjct: 252 NL 253


>gi|257463526|ref|ZP_05627919.1| ribosomal protein L11 methyltransferase [Fusobacterium sp. D12]
          Length = 309

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 66/145 (45%), Gaps = 9/145 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYI 258
           G   HPT    +L   ++    K G+ +LD   GSG    VA+KL   F+ G+++ +  +
Sbjct: 151 GTGSHPTT---SLCVDLMEEKIKVGETVLDVGTGSGILMIVAEKLGARFVCGVDIDELAV 207

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL-LVERGLIQPGQILTNAQGNISATVC 317
           ++A + +  +  +   +  VL G   E   A +  +V   ++    +L     +IS+ V 
Sbjct: 208 EVAHENLE-LNAVPKEKYEVLHGNLIEKIEAKSYDVVVANIL--ADVLLLLLKDISSVVK 264

Query: 318 ADGTLISGTELGS-IHRVGAKVSGS 341
             G +I    +   ++ V A V G+
Sbjct: 265 KGGKIIFSGIIEDKVNEVIAAVEGA 289


>gi|77163606|ref|YP_342131.1| hypothetical protein Noc_0059 [Nitrosococcus oceani ATCC 19707]
 gi|254435024|ref|ZP_05048531.1| hypothetical protein NOC27_2087 [Nitrosococcus oceani AFC27]
 gi|76881920|gb|ABA56601.1| hypothetical protein Noc_0059 [Nitrosococcus oceani ATCC 19707]
 gi|207088135|gb|EDZ65407.1| hypothetical protein NOC27_2087 [Nitrosococcus oceani AFC27]
          Length = 947

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 8/107 (7%)

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP--TQKPEALL 213
            P+P    +   ++A K    +         P  +     +N      H   T+ P   +
Sbjct: 92  CPNPWIADFITEWEAQKPEQPEGYHYH--REPFAADVSEGKNDPIYNAHSYHTKVPHKAI 149

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS----FIGIEMKQD 256
            R ++  T+PGDI+ D F G+G +G  A+          +G ++K D
Sbjct: 150 MRYILHYTEPGDIVFDGFCGTGMTGVAAQMCGDREVVMSLGYQLKPD 196


>gi|119511379|ref|ZP_01630492.1| site-specific DNA-methyltransferase (cytosine-specific) [Nodularia
           spumigena CCY9414]
 gi|119464001|gb|EAW44925.1| site-specific DNA-methyltransferase (cytosine-specific) [Nodularia
           spumigena CCY9414]
          Length = 157

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 29/60 (48%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
             E L++ +L        I+LDPF GSG+S   A  L    IGIE+    I +    I+S
Sbjct: 85  FSERLVTYLLKEFQPQPGIMLDPFSGSGSSLFAANALNWQTIGIEVLPVGITVCINFISS 144


>gi|317011743|gb|ADU85490.1| type III restriction-modification system: methylase [Helicobacter
           pylori SouthAfrica7]
          Length = 471

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 17/114 (14%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
           +NQ +  E    +IK  +   L  L     +++D I+ DPPYN Q N  +Y         
Sbjct: 366 KNQFNENEINGTLIKSENYQALNSLKNRYKEAIDCIYIDPPYNTQNNEFIYA-------- 417

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
                D+F    ++       L   + +L   G  +V    +       ++  +
Sbjct: 418 -----DRFKR-SSWLTMMTNRLELAQYLLNDKGVAFVSIDDNEQAYCKVLMDEI 465


>gi|303250292|ref|ZP_07336491.1| hypothetical protein APP6_1706 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|303250386|ref|ZP_07336584.1| hypothetical protein APP6_1801 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|303251501|ref|ZP_07337677.1| hypothetical protein APP6_0706 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307252260|ref|ZP_07534157.1| Type III restriction-modification system methylation subunit
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|302649733|gb|EFL79913.1| hypothetical protein APP6_0706 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302650712|gb|EFL80870.1| hypothetical protein APP6_1801 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302650762|gb|EFL80919.1| hypothetical protein APP6_1706 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306860182|gb|EFM92198.1| Type III restriction-modification system methylation subunit
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
          Length = 959

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 6/75 (8%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEM 253
           GE      K    +   +   +   DIILD F GSGT+      L       R +I +E 
Sbjct: 671 GENPFSFPKSIYAVLDSIKIVSGKNDIILDYFAGSGTTAHAVINLNREDNGNRKYILVEQ 730

Query: 254 KQDYIDIATKRIASV 268
            + +  +   R+  V
Sbjct: 731 GEYFDTVLKPRVQKV 745



 Score = 40.4 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 23  IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           +I  ++   L  L     + V  I+ DPPYN      +Y+  +      +
Sbjct: 402 LIHSDNFQALNLLQERYKEQVKCIYIDPPYNTNATPIIYKNGYKHSSWNS 451


>gi|301061026|ref|ZP_07201823.1| conserved hypothetical protein [delta proteobacterium NaphS2]
 gi|300444820|gb|EFK08788.1| conserved hypothetical protein [delta proteobacterium NaphS2]
          Length = 950

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 6/92 (6%)

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP--TQKPEALL 213
            P+P    +   Y        D   R  +   +  G     N     +H   T+ P   +
Sbjct: 94  CPNPFIADFIKYYGKPYNPATDDYRRGPFAADVSEGK----NDPIYNVHSYHTKVPHKAI 149

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
            R ++  T PGD++ D F G+G +G  A+   
Sbjct: 150 MRYILHFTNPGDLVFDGFCGTGMTGVAARMCG 181



 Score = 40.4 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 48/165 (29%), Gaps = 11/165 (6%)

Query: 28  SISVLEKLPAKSVDLIFADPPYNLQLNG--------QLYRPDHSLVDAVTDSWDKFSSFE 79
           S S +  +   SVD +F DPP+   +             R   +      ++  +    +
Sbjct: 512 STSEIPHIADNSVDYLFIDPPFGSNIMYSELNILWESWLRIKTNTTPEAIENMTQNKRLD 571

Query: 80  AYDAFTRAWLLACRRVLKPNGTL---WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            Y     +  +   RVLKP   +   +          I T L    F I N     K   
Sbjct: 572 DYRQLMLSCFVEAYRVLKPGHWMTVEFSNTKASVWNSIQTSLSEAGFIIANVSALDKKQG 631

Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
             N          + +I A          F+ +A         +R
Sbjct: 632 SFNAVTNTTSVKQDLVISAYKPNGGFENRFHQEAQTEEGIWDFVR 676


>gi|262163831|ref|ZP_06031571.1| ribosomal protein L11 methyltransferase [Vibrio mimicus VM223]
 gi|262027811|gb|EEY46476.1| ribosomal protein L11 methyltransferase [Vibrio mimicus VM223]
          Length = 295

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 56/163 (34%), Gaps = 21/163 (12%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P       + +     G   HPT    AL    
Sbjct: 96  WEREWMDNFHPMQFGRRLWICPSWREVPDPQAVNVMLDPGLAFGTGTHPTT---ALCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK---R-------- 264
           L +    G  ++D   GSG     A KL     IGI++    +  +     R        
Sbjct: 153 LDNLDLSGKTVIDFGCGSGILAIAAIKLGAAKVIGIDIDPQALLASKDNAARNGVENQIE 212

Query: 265 --IASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL 305
             +   QP G +   V+      P    + ++ +GL++PG  L
Sbjct: 213 VYLPKDQPAGLVADVVVANILAGPLRELSPII-KGLLKPGGQL 254


>gi|183597992|ref|ZP_02959485.1| hypothetical protein PROSTU_01343 [Providencia stuartii ATCC 25827]
 gi|188022766|gb|EDU60806.1| hypothetical protein PROSTU_01343 [Providencia stuartii ATCC 25827]
          Length = 294

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 49/144 (34%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    +L    
Sbjct: 95  WEREWMDNFHPMRFGQRLWICPSWRDVPDPNAVNVMLDPGLAFGTGTHPTT---SLCLEW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG     A KL     IGI++    I  +     + +  G  E
Sbjct: 152 LDGLDLEGKTVIDFGCGSGILAIAALKLGAAQAIGIDIDPQAIIASRD---NAERNGVSE 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L   + +P+     +V   ++
Sbjct: 209 RLSLYLPKDQPKELQADVVVANIL 232


>gi|169786877|ref|YP_001705690.1| putative methyltransferase cytosine (N4) specific (C2-like)
           [Acinetobacter baumannii SDF]
 gi|169150794|emb|CAP02988.1| putative methyltransferase Cytosine (N4) specific (C2-like)
           [Acinetobacter baumannii]
          Length = 494

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            K GD +LDPF GSGTS   +  L     G ++    + IA  ++ +++
Sbjct: 114 VKKGDHVLDPFCGSGTSLIESAHLGIHANGTDINPLAVYIANAKLEALK 162


>gi|323165428|gb|EFZ51215.1| hypothetical protein SS53G_4112 [Shigella sonnei 53G]
          Length = 702

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHM----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|229520987|ref|ZP_04410408.1| ribosomal protein L11 methyltransferase [Vibrio cholerae TM
           11079-80]
 gi|229341872|gb|EEO06873.1| ribosomal protein L11 methyltransferase [Vibrio cholerae TM
           11079-80]
          Length = 295

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 56/163 (34%), Gaps = 21/163 (12%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P       + +     G   HPT    AL    
Sbjct: 96  WEREWMDNFHPMQFGRRLWICPSWREVPDPQAVNVMLDPGLAFGTGTHPTT---ALCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK---R-------- 264
           L +    G  ++D   GSG     A KL     IGI++    +  +     R        
Sbjct: 153 LDNLDLSGKTVIDFGCGSGILAIAAIKLGAAKVIGIDIDPQALLASKDNAARNGVEDQIE 212

Query: 265 --IASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL 305
             +   QP G +   V+      P    + ++ +GL++PG  L
Sbjct: 213 VYLPKDQPEGLVADVVVANILAGPLRELSPII-KGLLKPGGQL 254


>gi|229524747|ref|ZP_04414152.1| ribosomal protein L11 methyltransferase [Vibrio cholerae bv.
           albensis VL426]
 gi|229338328|gb|EEO03345.1| ribosomal protein L11 methyltransferase [Vibrio cholerae bv.
           albensis VL426]
          Length = 295

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 56/163 (34%), Gaps = 21/163 (12%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P       + +     G   HPT    AL    
Sbjct: 96  WEREWMDNFHPMQFGRRLWICPSWREVPDPQAVNVMLDPGLAFGTGTHPTT---ALCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK---R-------- 264
           L +    G  ++D   GSG     A KL     IGI++    +  +     R        
Sbjct: 153 LDNLDLSGKTVIDFGCGSGILAIAAIKLGAAKVIGIDIDPQALLASKDNAARNGVEDKID 212

Query: 265 --IASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL 305
             +   QP G +   V+      P    + ++ +GL++PG  L
Sbjct: 213 VYLPKDQPEGLVADVVVANILAGPLRELSPII-KGLLKPGGQL 254


>gi|152978566|ref|YP_001344195.1| 23S rRNA m(2)G2445 methyltransferase [Actinobacillus succinogenes
           130Z]
 gi|229560163|sp|A6VMR3|RLML_ACTSZ RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|150840289|gb|ABR74260.1| putative RNA methylase [Actinobacillus succinogenes 130Z]
          Length = 676

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 20/109 (18%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N +   + K+I+ + +  L +   K  DLIF DPP              S    + DSWD
Sbjct: 557 NDVDGKRHKLIQADCLQWLMRC-DKQFDLIFVDPP------------TFSNSKRMEDSWD 603

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                          +   +R+L+PNGT+    +          L  L 
Sbjct: 604 VQRDHI-------KLMKNLKRILRPNGTIVFSNNKRGFKMDFDGLAQLG 645


>gi|15640321|ref|NP_229948.1| ribosomal protein L11 methyltransferase [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121727069|ref|ZP_01680260.1| ribosomal protein L11 methyltransferase [Vibrio cholerae V52]
 gi|153801523|ref|ZP_01956109.1| ribosomal protein L11 methyltransferase [Vibrio cholerae MZO-3]
 gi|153822832|ref|ZP_01975499.1| ribosomal protein L11 methyltransferase [Vibrio cholerae B33]
 gi|153827379|ref|ZP_01980046.1| ribosomal protein L11 methyltransferase [Vibrio cholerae MZO-2]
 gi|229509282|ref|ZP_04398765.1| ribosomal protein L11 methyltransferase [Vibrio cholerae B33]
 gi|229512698|ref|ZP_04402166.1| ribosomal protein L11 methyltransferase [Vibrio cholerae TMA 21]
 gi|229516226|ref|ZP_04405674.1| ribosomal protein L11 methyltransferase [Vibrio cholerae RC9]
 gi|229527211|ref|ZP_04416604.1| ribosomal protein L11 methyltransferase [Vibrio cholerae 12129(1)]
 gi|229606422|ref|YP_002877070.1| ribosomal protein L11 methyltransferase [Vibrio cholerae MJ-1236]
 gi|254286234|ref|ZP_04961193.1| ribosomal protein L11 methyltransferase [Vibrio cholerae AM-19226]
 gi|254851429|ref|ZP_05240779.1| ribosomal protein L11 methyltransferase [Vibrio cholerae MO10]
 gi|255744094|ref|ZP_05418048.1| ribosomal protein L11 methyltransferase [Vibrio cholera CIRS 101]
 gi|258624523|ref|ZP_05719467.1| ribosomal protein L11 methyltransferase [Vibrio mimicus VM603]
 gi|262161984|ref|ZP_06031001.1| ribosomal protein L11 methyltransferase [Vibrio cholerae INDRE
           91/1]
 gi|262172603|ref|ZP_06040281.1| ribosomal protein L11 methyltransferase [Vibrio mimicus MB-451]
 gi|38605494|sp|Q9KV64|PRMA_VIBCH RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|9654704|gb|AAF93467.1| ribosomal protein L11 methyltransferase [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121630580|gb|EAX62970.1| ribosomal protein L11 methyltransferase [Vibrio cholerae V52]
 gi|124122928|gb|EAY41671.1| ribosomal protein L11 methyltransferase [Vibrio cholerae MZO-3]
 gi|126519650|gb|EAZ76873.1| ribosomal protein L11 methyltransferase [Vibrio cholerae B33]
 gi|149738709|gb|EDM53051.1| ribosomal protein L11 methyltransferase [Vibrio cholerae MZO-2]
 gi|150423649|gb|EDN15591.1| ribosomal protein L11 methyltransferase [Vibrio cholerae AM-19226]
 gi|229335219|gb|EEO00703.1| ribosomal protein L11 methyltransferase [Vibrio cholerae 12129(1)]
 gi|229346652|gb|EEO11622.1| ribosomal protein L11 methyltransferase [Vibrio cholerae RC9]
 gi|229350208|gb|EEO15160.1| ribosomal protein L11 methyltransferase [Vibrio cholerae TMA 21]
 gi|229353597|gb|EEO18534.1| ribosomal protein L11 methyltransferase [Vibrio cholerae B33]
 gi|229369077|gb|ACQ59500.1| ribosomal protein L11 methyltransferase [Vibrio cholerae MJ-1236]
 gi|254847134|gb|EET25548.1| ribosomal protein L11 methyltransferase [Vibrio cholerae MO10]
 gi|255738359|gb|EET93750.1| ribosomal protein L11 methyltransferase [Vibrio cholera CIRS 101]
 gi|258583220|gb|EEW08025.1| ribosomal protein L11 methyltransferase [Vibrio mimicus VM603]
 gi|261893679|gb|EEY39665.1| ribosomal protein L11 methyltransferase [Vibrio mimicus MB-451]
 gi|262028362|gb|EEY47018.1| ribosomal protein L11 methyltransferase [Vibrio cholerae INDRE
           91/1]
 gi|327483165|gb|AEA77572.1| Ribosomal protein L11 methyltransferase [Vibrio cholerae LMA3894-4]
          Length = 295

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 56/163 (34%), Gaps = 21/163 (12%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P       + +     G   HPT    AL    
Sbjct: 96  WEREWMDNFHPMQFGRRLWICPSWREVPDPQAVNVMLDPGLAFGTGTHPTT---ALCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK---R-------- 264
           L +    G  ++D   GSG     A KL     IGI++    +  +     R        
Sbjct: 153 LDNLDLSGKTVIDFGCGSGILAIAAIKLGAAKVIGIDIDPQALLASKDNAARNGVEDQIE 212

Query: 265 --IASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL 305
             +   QP G +   V+      P    + ++ +GL++PG  L
Sbjct: 213 VYLPKDQPEGLVADVVVANILAGPLRELSPII-KGLLKPGGQL 254


>gi|312864539|ref|ZP_07724770.1| conserved hypothetical protein [Streptococcus downei F0415]
 gi|311099666|gb|EFQ57879.1| conserved hypothetical protein [Streptococcus downei F0415]
          Length = 234

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 59/155 (38%), Gaps = 29/155 (18%)

Query: 4   KNSLAINEN-QNSIFEWKDK---IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQ 56
            N    ++N ++ + E KD    IIKGN++  L  L    A  V LI+ D PYN   +  
Sbjct: 93  TNFKRFDQNGEHEVEELKDTDNLIIKGNNLIALHSLKKRFAGKVKLIYIDVPYNTGSDSF 152

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
            +                      +  F +  L+  R +L   G ++V    + +  +G 
Sbjct: 153 NHST--------------------WLTFMKNRLMVARELLSKEGVIFVHLDDNEVKYLGV 192

Query: 117 MLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
           +L  +       ++V   +NP     G    N HE
Sbjct: 193 LLDEIFGRENFIELVTVVNNPRGRDYGG-IANMHE 226


>gi|74311505|ref|YP_309924.1| 23S rRNA m(2)G2445 methyltransferase [Shigella sonnei Ss046]
 gi|123617569|sp|Q3Z3H3|RLML_SHISS RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|73854982|gb|AAZ87689.1| putative oxidoreductase [Shigella sonnei Ss046]
          Length = 702

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHM----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|148656408|ref|YP_001276613.1| hypothetical protein RoseRS_2284 [Roseiflexus sp. RS-1]
 gi|148568518|gb|ABQ90663.1| hypothetical protein RoseRS_2284 [Roseiflexus sp. RS-1]
          Length = 450

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 3/108 (2%)

Query: 208 KPEALL-SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
            P  L+   +          +LDPF G+GT+    KKL    +GIE       +A  +I 
Sbjct: 47  FPPHLVREYLKRFGINSRHRVLDPFCGAGTTIVECKKLGIPAVGIEANPLAHFVAQVKID 106

Query: 267 -SVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNIS 313
            S  P   I+ +    +R   ++  +  +E   + P     +A  N+ 
Sbjct: 107 WSPDPDELIQHSEYVAERARAQLEADG-IEDDPLFPSMQRADAIRNLR 153



 Score = 37.3 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY 49
           I   ++ S+ + L   S+D +   PPY
Sbjct: 255 ICHADARSIGDVLEPASIDAVITSPPY 281


>gi|37525858|ref|NP_929202.1| hypothetical protein plu1935 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36785287|emb|CAE14228.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 695

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 41/108 (37%), Gaps = 29/108 (26%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYN-------------------LQLNGQ-LYRPDH 62
           I+  +S S+   +P  SVD +  DPPY                    L    + L R D 
Sbjct: 465 ILNADSSSL--PIPNSSVDAVITDPPYFDFVHYSELSDFFYAWLSNALSGEYEYLNRKDS 522

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
           S  + V D        E++     +    C RVLK +G L    SYH+
Sbjct: 523 SHENEVQD-----RDNESFTRKICSIFKECNRVLKEDGLLCF--SYHH 563



 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++LDPF GSGT+   A KL  S IG ++  
Sbjct: 72  VVLDPFMGSGTTLGEAAKLGASIIGCDVNP 101


>gi|148927649|ref|ZP_01811106.1| hypothetical protein TM7_0353 [candidate division TM7 genomosp.
           GTL1]
 gi|147887005|gb|EDK72516.1| hypothetical protein TM7_0353 [candidate division TM7 genomosp.
           GTL1]
          Length = 358

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 1/82 (1%)

Query: 198 KDGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           K+    +    P       L   +  PG +++DP+ GS T+ A   +   SF G ++   
Sbjct: 43  KNEFYRYYAGYPLDFAEWALSELNLSPGALVIDPWNGSATTAAACARFGASFQGYDINPV 102

Query: 257 YIDIATKRIASVQPLGNIELTV 278
            + +   R+AS       E  +
Sbjct: 103 MVHLGRARVASSVDFEEAEEII 124


>gi|14521822|ref|NP_127298.1| hypothetical protein PAB1283 [Pyrococcus abyssi GE5]
 gi|5459042|emb|CAB50528.1| Methylase, puative RNA modification protein [Pyrococcus abyssi GE5]
          Length = 332

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 7/117 (5%)

Query: 178 VQMRSDWL-IPICSGSERLRNKDGEKLHPTQKPEALLSRI---LVSSTKPGDIILDPFFG 233
              R  W+ I I     +  ++      P  +P AL  RI   +V+ T+    ILDPF G
Sbjct: 133 YCGRKLWIGIRIREFRGKEFDERKADRRPFSRPIALPPRIARAMVNLTRATREILDPFMG 192

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAF 290
           +G     A  +     GI++++D ++ A     +++  G  +  V  G  T+ + AF
Sbjct: 193 TGGMLIEAGLMGLKVYGIDIREDMVEGAK---INLEYYGVKDYVVKVGDATKIKEAF 246


>gi|145352834|ref|XP_001420740.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580975|gb|ABO99033.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 411

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
             L+ R    +T+    +LDPF G GT+   A+ L    +G ++      ++  R
Sbjct: 35  CDLIMRECFEATETRS-VLDPFAGGGTTLVCAQTLGWRAVGADVSPLACFVSANR 88


>gi|90407141|ref|ZP_01215329.1| ribosomal protein L11 methyltransferase [Psychromonas sp. CNPT3]
 gi|90311717|gb|EAS39814.1| ribosomal protein L11 methyltransferase [Psychromonas sp. CNPT3]
          Length = 230

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 7/108 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    AL    
Sbjct: 30  WEREWMDNFHPMQFGKRLWICPSWKPVPDENAVNVMLDPGLAFGTGTHPTT---ALCLTW 86

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           L        +I+D   GSG     A KL  +  IGI++    I  +  
Sbjct: 87  LEGQDLRDKVIIDFGCGSGILAIAALKLGAKRVIGIDIDPQAITASRD 134


>gi|317061082|ref|ZP_07925567.1| ribosomal protein L11 methyltransferase [Fusobacterium sp. D12]
 gi|313686758|gb|EFS23593.1| ribosomal protein L11 methyltransferase [Fusobacterium sp. D12]
          Length = 313

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 66/145 (45%), Gaps = 9/145 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYI 258
           G   HPT    +L   ++    K G+ +LD   GSG    VA+KL   F+ G+++ +  +
Sbjct: 155 GTGSHPTT---SLCVDLMEEKIKVGETVLDVGTGSGILMIVAEKLGARFVCGVDIDELAV 211

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL-LVERGLIQPGQILTNAQGNISATVC 317
           ++A + +  +  +   +  VL G   E   A +  +V   ++    +L     +IS+ V 
Sbjct: 212 EVAHENL-ELNAVPKEKYEVLHGNLIEKIEAKSYDVVVANIL--ADVLLLLLKDISSVVK 268

Query: 318 ADGTLISGTELGS-IHRVGAKVSGS 341
             G +I    +   ++ V A V G+
Sbjct: 269 KGGKIIFSGIIEDKVNEVIAAVEGA 293


>gi|54020181|ref|YP_115910.1| hypothetical protein mhp400 [Mycoplasma hyopneumoniae 232]
 gi|53987354|gb|AAV27555.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232]
          Length = 420

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%)

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
            ++ ++  EK+    K  AL+  ++         +LD F GSGT+G    +L 
Sbjct: 253 NKIFSESSEKVFNFPKSTALIEYLINLHPNKNARVLDFFAGSGTTGQAVLELN 305


>gi|332798183|ref|YP_004459682.1| DNA methylase N-4/N-6 domain-containing protein [Tepidanaerobacter
           sp. Re1]
 gi|332695918|gb|AEE90375.1| DNA methylase N-4/N-6 domain protein [Tepidanaerobacter sp. Re1]
          Length = 400

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 34/76 (44%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           I      ++   +     +   KP  +++  +   T+ G+I+LDPF GSG  G  A   R
Sbjct: 7   IDYAVPPQKDCARYKMHKYWAAKPWYVVAEYIKHFTREGEIVLDPFCGSGVVGCEALIHR 66

Query: 246 RSFIGIEMKQDYIDIA 261
           R  +  ++    + IA
Sbjct: 67  RKAVLNDLNPMAVFIA 82



 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNG 55
           L  +P +S+D  F DPPY   +  
Sbjct: 327 LSDIPDESIDYCFTDPPYGGSIQY 350


>gi|150445935|dbj|BAF68988.1| AvaI methyltransferase-homolog [Microcystis aeruginosa]
          Length = 470

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 23/57 (40%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
               L+  +L         ILDPF GSGT+   A     S  GIE+     ++   R
Sbjct: 61  FSVDLIVYLLEKYGIKQGKILDPFAGSGTTLFAAAARGLSADGIELLPIGQELIITR 117



 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 20/38 (52%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQL 57
           K ++ +G+ + +L ++ ++  D I   PPY  + +   
Sbjct: 263 KIQLYQGSCLEILPEISSEKYDSIITSPPYCNRYDYTR 300


>gi|166368013|ref|YP_001660286.1| AvaI methyltransferase-homolog [Microcystis aeruginosa NIES-843]
 gi|166090386|dbj|BAG05094.1| AvaI methyltransferase-homolog [Microcystis aeruginosa NIES-843]
          Length = 470

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 23/57 (40%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
               L+  +L         ILDPF GSGT+   A     S  GIE+     ++   R
Sbjct: 61  FSVDLIVYLLEKYGIKQGKILDPFAGSGTTLFAAAARGLSADGIELLPIGQELIITR 117



 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 20/38 (52%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQL 57
           K ++ +G+ + +L ++ ++  D I   PPY  + +   
Sbjct: 263 KIQLYQGSCLEILPEISSEKYDSIITSPPYCNRYDYTR 300


>gi|332289361|ref|YP_004420213.1| putative DNA methylase [Gallibacterium anatis UMN179]
 gi|330432257|gb|AEC17316.1| putative DNA methylase [Gallibacterium anatis UMN179]
          Length = 149

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query: 18  EWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           + ++  I+G ++ VL+ L      SV +I+ DPPYN   N  +Y+ +    D+  D  +K
Sbjct: 65  QSQNVFIEGENLEVLKILQKSYFNSVKMIYIDPPYNTTGNDFIYKDN--FADSQADYAEK 122

Query: 75  FSSFEAYDAFTRAWLLA 91
               +      RA++  
Sbjct: 123 VGDKDEVGKLKRAFVKN 139


>gi|327488511|sp|Q9UY84|TMG10_PYRAB RecName: Full=N(2),N(2)-dimethylguanosine tRNA methyltransferase
           Trm-G10; AltName: Full=(Pab)Trm-G10; AltName:
           Full=tRNA:G10 dimethyltransferase
          Length = 329

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 7/117 (5%)

Query: 178 VQMRSDWL-IPICSGSERLRNKDGEKLHPTQKPEALLSRI---LVSSTKPGDIILDPFFG 233
              R  W+ I I     +  ++      P  +P AL  RI   +V+ T+    ILDPF G
Sbjct: 130 YCGRKLWIGIRIREFRGKEFDERKADRRPFSRPIALPPRIARAMVNLTRATREILDPFMG 189

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAF 290
           +G     A  +     GI++++D ++ A     +++  G  +  V  G  T+ + AF
Sbjct: 190 TGGMLIEAGLMGLKVYGIDIREDMVEGAK---INLEYYGVKDYVVKVGDATKIKEAF 243


>gi|289192336|ref|YP_003458277.1| Methyltransferase type 11 [Methanocaldococcus sp. FS406-22]
 gi|288938786|gb|ADC69541.1| Methyltransferase type 11 [Methanocaldococcus sp. FS406-22]
          Length = 279

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 27/97 (27%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
            IN     +F+   KII G++  V+++   +  D++  DPP    L G LY         
Sbjct: 164 KINPYSEELFKGNIKIILGDAFDVIKRFKDEEFDVVIHDPP-RFSLAGHLY--------- 213

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
                            +  +     RVLKP G L+ 
Sbjct: 214 -----------------SEEFYREIFRVLKPGGRLFH 233


>gi|315932576|gb|EFV11508.1| type III restriction enzyme M protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 448

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 19/109 (17%)

Query: 1   MSQKNSLAINENQNSIFEWKD-KIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQ 56
           +S++N   + ++  ++ E  + +++K ++   L  L  K    +DLI+ DPP+N      
Sbjct: 355 LSEENYYKLLQSFENLDEILNGELVKADNFQALNSLMPKYQGKIDLIYIDPPFNTG---- 410

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI 105
                     +  D  DKF     + +     L   +  L   G+   I
Sbjct: 411 ----------SDFDYKDKFQD-STWLSLMHNRLELAKEFLSDKGSFICI 448


>gi|159027068|emb|CAO89253.1| avaIM [Microcystis aeruginosa PCC 7806]
          Length = 459

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 23/57 (40%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
               L+  +L         ILDPF GSGT+   A     S  GIE+     ++   R
Sbjct: 50  FSVDLIVYLLEKYGIKRGKILDPFAGSGTTLFAAAARGLSADGIELLPIGQELIITR 106



 Score = 43.8 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 20/38 (52%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQL 57
           K ++ +G+ + +L ++ ++  + I   PPY  + +   
Sbjct: 252 KIQLYQGSCLEILPEISSEKYNSIITSPPYCNRYDYTR 289


>gi|296536606|ref|ZP_06898684.1| DNA methylase N-4/N-6 [Roseomonas cervicalis ATCC 49957]
 gi|296263065|gb|EFH09612.1| DNA methylase N-4/N-6 [Roseomonas cervicalis ATCC 49957]
          Length = 630

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 24/43 (55%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           +PT+     ++  L   TKPGD +LD F GSGT+G  A    R
Sbjct: 57  YPTKISPEAIALFLAVHTKPGDTVLDTFGGSGTTGLAALLCDR 99



 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 10/87 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG-QLYRPDHSLVDAVTDSWDKF----- 75
           ++++G+S  +   LP  SV  +F DPP+   +   ++ +   + +  +TD  ++      
Sbjct: 413 RVVRGSSTHL--DLPDASVSYVFTDPPFGDYIPYAEVNQISEAWLGKLTDRSEEIVISPS 470

Query: 76  --SSFEAYDAFTRAWLLACRRVLKPNG 100
              S E Y            RVLKP G
Sbjct: 471 GGKSVETYGRMMADVFAEIARVLKPEG 497


>gi|163848981|ref|YP_001637025.1| hypothetical protein Caur_3451 [Chloroflexus aurantiacus J-10-fl]
 gi|222526938|ref|YP_002571409.1| hypothetical protein Chy400_3716 [Chloroflexus sp. Y-400-fl]
 gi|163670270|gb|ABY36636.1| hypothetical protein Caur_3451 [Chloroflexus aurantiacus J-10-fl]
 gi|222450817|gb|ACM55083.1| conserved hypothetical protein [Chloroflexus sp. Y-400-fl]
          Length = 413

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           Q    L+  +L S    G  +LDP  GSGT    A  L     GI++      +A 
Sbjct: 42  QFSPQLVEVLLQSYAPQGGTVLDPCMGSGTVLYEAAHLGSPVYGIDVNPAAYVLAR 97



 Score = 40.4 bits (93), Expect = 0.50,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 54/160 (33%), Gaps = 23/160 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRP---------DHSLVDAV 68
           K + G++  +   LP +SVD + + PPY    N   N +               S + A 
Sbjct: 198 KALFGDARRI--DLPDESVDFVLSSPPYLNVFNYHHNARTGIEVLGWNPLVAGQSEIGAN 255

Query: 69  -TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS-----YHNIFRIGTMLQNLN 122
                ++F +   Y       L    RV +    + ++           F  G +++ + 
Sbjct: 256 RKFRQNRFLTVVQYCIDIALMLAEICRVGRRAARIILVLGRESRVQKTPFANGYIVEQIA 315

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
              L   +  K      F  R  Q  +E ++  +P    K
Sbjct: 316 VRALGMHIHLKQE--RFFSNRFGQRIYEDILHLTPPSDRK 353


>gi|123187375|gb|ABM69264.1| M1.BmrI [Bacillus megaterium]
          Length = 379

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 204 HPTQKPEALLSRILVSSTKPGDI-ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +P +    +   ++ +   P    ILDPF GSGT+   A+    S +G+++      I+ 
Sbjct: 37  YPAKFIPEIPRTLIETLPLPEGTSILDPFCGSGTTLVEAQNRGISTVGVDLNPIACLISK 96


>gi|154151745|ref|YP_001405363.1| methyltransferase DNA modification enzyme [Candidatus Methanoregula
           boonei 6A8]
 gi|154000297|gb|ABS56720.1| methyltransferase DNA modification enzyme [Methanoregula boonei
           6A8]
          Length = 414

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 27/77 (35%)

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
            +  +R  +   E  +       L    +   T+  DII DPF G GT+   A    R  
Sbjct: 47  WTSRQRQASSLHEISYRACFKPQLPGFFIDLLTRKCDIIYDPFSGRGTTAIEAGLRGRKV 106

Query: 249 IGIEMKQDYIDIATKRI 265
           I  +       +A  R 
Sbjct: 107 IANDANPLSRVLAEPRF 123


>gi|53728792|ref|ZP_00348242.1| COG0742: N6-adenine-specific methylase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 161

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           V  +   D +LD F GSGT+   A +   ++ + IE  ++  +I   
Sbjct: 5   VLGSFNVDSVLDIFAGSGTTALAAYENGIKNAVMIEKNKEAFEIMKA 51


>gi|315633698|ref|ZP_07888988.1| ribosomal protein L11 methyltransferase [Aggregatibacter segnis
           ATCC 33393]
 gi|315477740|gb|EFU68482.1| ribosomal protein L11 methyltransferase [Aggregatibacter segnis
           ATCC 33393]
          Length = 294

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 50/152 (32%), Gaps = 11/152 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    AL    
Sbjct: 95  WEREWMDNFHPMQFGQRLWICPSWRDVPDPNAVNVMLDPGLAFGTGTHPTT---ALCLEW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S       ++D   GSG     A KL     +GI++    I  +     + +  G  +
Sbjct: 152 LDSLDLKDKTVIDFGCGSGILAIAALKLGAKSAVGIDIDPQAILASRN---NAEQNGVAD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQ-PGQILT 306
              L     +P      +V   ++  P + L 
Sbjct: 209 RLQLFLSDEKPSDLKADVVVANILAGPLKELY 240


>gi|167855190|ref|ZP_02477960.1| Adenine-specific DNA methylase containing a Zn-ribbon-like protein
           [Haemophilus parasuis 29755]
 gi|167853643|gb|EDS24887.1| Adenine-specific DNA methylase containing a Zn-ribbon-like protein
           [Haemophilus parasuis 29755]
          Length = 799

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 24/49 (48%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +KP  + S  + + T    I LDPF GSG S   A KL    IG ++  
Sbjct: 27  KKPHNIWSEYIKNYTPSNGIYLDPFCGSGISIIEALKLGIKAIGFDLNP 75


>gi|217032421|ref|ZP_03437915.1| hypothetical protein HPB128_164g21 [Helicobacter pylori B128]
 gi|216945900|gb|EEC24518.1| hypothetical protein HPB128_164g21 [Helicobacter pylori B128]
          Length = 242

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 40/114 (35%), Gaps = 17/114 (14%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
           ++Q +  E    +IK  +   L  L     +++D I+ DPPYN Q N  +Y  +      
Sbjct: 138 KSQFNEDEINGTLIKSENYQALNSLKNRYKEAIDCIYIDPPYNTQNNEFVYADNFKRSS- 196

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
                        + +     L     +L   G ++V    +       ++  +
Sbjct: 197 -------------WLSMMENRLELAHALLSDKGVVFVSIDDNEQAYCKALMDEV 237


>gi|62182921|ref|YP_219338.1| hypothetical protein SC4351 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62130554|gb|AAX68257.1| hypothetical protein SCH_4351 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|322717423|gb|EFZ08994.1| DNA methylase N-4/N-6 [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 423

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 27/66 (40%)

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
           +  S    D ILDPF GSGT+   ++ +  +   IE+     D+   ++        I  
Sbjct: 47  IQKSLIKVDKILDPFGGSGTTALTSQLMGINPTTIEVNPFLADLIESKLTEYNTQKLISD 106

Query: 277 TVLTGK 282
            V   K
Sbjct: 107 WVFVSK 112


>gi|224586319|ref|YP_002640118.1| hypothetical protein SPC_4628 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224470847|gb|ACN48677.1| hypothetical protein SPC_4628 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 423

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 27/66 (40%)

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
           +  S    D ILDPF GSGT+   ++ +  +   IE+     D+   ++        I  
Sbjct: 47  IQKSLIKVDKILDPFGGSGTTALTSQLMGINPTTIEVNPFLADLIESKLTEYNTQKLISD 106

Query: 277 TVLTGK 282
            V   K
Sbjct: 107 WVFVSK 112


>gi|163803827|ref|ZP_02197677.1| ribosomal protein L11 methyltransferase [Vibrio sp. AND4]
 gi|159172370|gb|EDP57247.1| ribosomal protein L11 methyltransferase [Vibrio sp. AND4]
          Length = 295

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 54/168 (32%), Gaps = 12/168 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  +K         S   IP       + +     G   HPT    AL    
Sbjct: 96  WEREWMENFHPMKFGERLWICPSWRDIPEPDAVNVMLDPGLAFGTGTHPTT---ALCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG     A KL     IGI++    +  +     + +  G  +
Sbjct: 153 LESKDLSGKTVIDFGCGSGILAIAAIKLGAEKVIGIDIDPQALQASRD---NAERNGVAD 209

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
              +   + +P      +V   ++     L      I   V  +G L 
Sbjct: 210 QLEVYLPQNQPEGLLADVVVANIL--AGPLRELAPIIKGLVKPNGELA 255


>gi|145637282|ref|ZP_01792943.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
           PittHH]
 gi|145640648|ref|ZP_01796231.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
           R3021]
 gi|145269534|gb|EDK09476.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
           PittHH]
 gi|145274574|gb|EDK14437.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
           22.4-21]
          Length = 295

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 57/182 (31%), Gaps = 14/182 (7%)

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEK 202
            N    +         + +  N+  ++         S   +P  +    + +     G  
Sbjct: 81  SNTAYKIEQIEDKDWEREWMDNFHPMQFGKRLWICPSWRDVPDENAVNVMLDPGLAFGTG 140

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYIDIA 261
            HPT    AL    L         ++D   GSG     A KL     +GI++    I  +
Sbjct: 141 THPTT---ALCLEWLDGLDLKDKSVIDFGCGSGILAIAALKLGAKSAVGIDIDPQAILAS 197

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ-PGQILTNAQGNISATVCADG 320
                + +  G  +   L     +P      +V   ++  P + L      IS  V  +G
Sbjct: 198 RN---NAEQNGVADRLQLFLSNEKPSDLKADVVVANILAGPLKELYPI---ISQLVKPNG 251

Query: 321 TL 322
            L
Sbjct: 252 DL 253


>gi|320659557|gb|EFX27120.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O55:H7 str.
           USDA 5905]
          Length = 702

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------ALMKDLKRLLREGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|305663012|ref|YP_003859300.1| methyltransferase-like protein [Ignisphaera aggregans DSM 17230]
 gi|304377581|gb|ADM27420.1| methyltransferase-like protein [Ignisphaera aggregans DSM 17230]
          Length = 290

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 14/109 (12%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP--------YNLQLNGQLYR 59
           ++N     + + + +II GN+I V++    ++ D I  DPP        Y+L     LYR
Sbjct: 178 SMNPWSRGLEDNRIRIILGNAIEVIKLFDEETFDAIVHDPPRFNIAGELYSLDFYRDLYR 237

Query: 60  --PDHSLVDAVTDSWDKFSSFEAY----DAFTRAWLLACRRVLKPNGTL 102
                  +   T    + ++ +      +   RA     R + +  G +
Sbjct: 238 VLRRGGKLFHYTGEPGRHTNIDILKGIKNRLYRAGFDEVRWIPRAQGFI 286


>gi|284008661|emb|CBA75297.1| ribosomal protein L11 methyltransferase [Arsenophonus nasoniae]
          Length = 295

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 7/103 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
            ++ +  N+  ++  ++     S    P  +    + +     G   HPT    +L    
Sbjct: 95  WSREWMDNFHPMRFGHKLWICPSWRDTPDPNAVNVILDPGLAFGTGTHPTT---SLCLEW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           L S       ++D   GSG     A KL  +  IGI++    I
Sbjct: 152 LDSLNLKDKTVIDFGCGSGILAIAALKLGAKKAIGIDIDPQAI 194


>gi|257790559|ref|YP_003181165.1| DNA methylase N-4/N-6 domain-containing protein [Eggerthella lenta
           DSM 2243]
 gi|257474456|gb|ACV54776.1| DNA methylase N-4/N-6 domain protein [Eggerthella lenta DSM 2243]
          Length = 586

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 56/154 (36%), Gaps = 23/154 (14%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK------ 74
           I+G+++  L+ L       V LIF DPPYN   +  +Y+ D+SL  A   + D       
Sbjct: 101 IEGDNLDALKILKETYAGKVKLIFIDPPYNTGHD-FVYKDDYSLSGAEYKNIDADVSEMG 159

Query: 75  --FSSFEAYDAFTRAWLLACRR-------VLKPNGTLWVIGSYHNIFRIGTMLQNLN--- 122
              ++ +    F   W             +L  +G L+V    +    +  ML  +    
Sbjct: 160 MLVANHDTEGRFHSNWCTMLYPRLLLARDLLAADGVLFVCIDDNEFANLEKMLDEIFGSS 219

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
             + N I      P     G    +  E LI+  
Sbjct: 220 NRVANVIWQHSVQPKGYLSGFSIHHN-EVLIYQK 252



 Score = 42.3 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 48/149 (32%), Gaps = 33/149 (22%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQD 256
           +  T KP  ++ R L        ++ D F GS T+     +        R  I +++  +
Sbjct: 381 VFDTPKPVGVVERALSLVKGNNYLVFDFFAGSSTTAEAVMRKNAKDGGSRMCISVQLDAE 440

Query: 257 --------------YIDIATKRIASV-------QPLGNIELTVLTGKRTEPRVAFNLL-- 293
                           ++  +RI              N++L +    +  P + F +L  
Sbjct: 441 CELNSVASRSGFKTICNLGEERIRRAGDKIAADIDKENMQLELGAEPKPYPDLGFRVLRI 500

Query: 294 ----VERGLIQPGQILTNAQGNISATVCA 318
                +   + PG+    +  + +  V  
Sbjct: 501 DYSNFKDFYLTPGETAQESLFDFADNVKE 529


>gi|209527568|ref|ZP_03276069.1| site-specific DNA-methyltransferase (cytosine-specific)
           [Arthrospira maxima CS-328]
 gi|209491991|gb|EDZ92345.1| site-specific DNA-methyltransferase (cytosine-specific)
           [Arthrospira maxima CS-328]
          Length = 486

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
           + KG+ + V+  LP  S D +   PPY  + +    
Sbjct: 275 LYKGSCLEVMPCLPNGSYDAMITSPPYCNRYDYTRT 310



 Score = 43.1 bits (100), Expect = 0.083,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA-TKRIASVQP 270
           L+  +L         ILDPF GSGT+   A  +     GIE+     +I  T+R+ + + 
Sbjct: 74  LVQLLLAKYGLTQGKILDPFAGSGTALFAASDIGIHADGIELLPIGQNIIDTRRLLNSEF 133

Query: 271 LGNI 274
            G+ 
Sbjct: 134 TGDD 137


>gi|190573824|ref|YP_001971669.1| putative modification methylase [Stenotrophomonas maltophilia
           K279a]
 gi|190011746|emb|CAQ45366.1| putative modification methylase [Stenotrophomonas maltophilia
           K279a]
          Length = 474

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 9/87 (10%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            G    P +    +    + +      ++ DPF GSGT+   A    +   G ++     
Sbjct: 68  HGLHRFPAKYIPQVPQWAIRNFAGEDSVVWDPFMGSGTTLVEALCAVKQSYGTDIDP--- 124

Query: 259 DIATKRI---ASVQPLGNIELTVLTGK 282
                R+   A   PL    L  L+ K
Sbjct: 125 ---LARLISGAKTTPLSPSRLAALSEK 148



 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY 49
            I++GN++SV   L   SVDLI   PPY
Sbjct: 264 TILEGNALSV--PLKDASVDLIVTSPPY 289


>gi|163781933|ref|ZP_02176933.1| ribosomal protein L11 methyltransferase [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159883153|gb|EDP76657.1| ribosomal protein L11 methyltransferase [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 246

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 61/184 (33%), Gaps = 46/184 (25%)

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
           ED  +   W  P+     +     G  LHPT K   +  R+L    + GD +LD   GSG
Sbjct: 70  EDFVVMPPWKTPV---FIKPGMAFGTGLHPTTK---MCIRLLKEVLREGDSLLDVGCGSG 123

Query: 236 TSGAVAKKLRR-SFIGIEMKQDYID----------------------------------- 259
               VAK L     +GI++ +D +                                    
Sbjct: 124 ILSIVAKMLGASRVVGIDVSEDAVRESLENAELNGVSIEVYRKTPSELEERFEVVVANLE 183

Query: 260 --IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
             I  K + ++ PL N         + E    F  ++E+  ++  +IL +          
Sbjct: 184 MPIFRKELRNILPLMNRAAVFSGIYKKEELEEFLHMIEQEGLKADRILEDED--WFCIGV 241

Query: 318 ADGT 321
            DG 
Sbjct: 242 GDGW 245


>gi|301155533|emb|CBW15001.1| methylase for 50S ribosomal subunit protein L11 [Haemophilus
           parainfluenzae T3T1]
          Length = 295

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 56/166 (33%), Gaps = 11/166 (6%)

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEK 202
           +N    +         + +  N+  ++         S   +P  +    + +     G  
Sbjct: 81  ENTAYKIEQIEDKDWEREWMDNFHPMQFGKRLWICPSWREVPDQNAVNVMLDPGLAFGTG 140

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIA 261
            HPT    AL    L      G  ++D   GSG     A KL  ++ IGI++    I  +
Sbjct: 141 THPTT---ALCLEWLDGLDLTGKTVIDFGCGSGILAIAALKLGAKNAIGIDIDPQAILAS 197

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ-PGQILT 306
                  +    ++L +   K  + +     +V   ++  P + L 
Sbjct: 198 RNNAEQNEVADRLQLFLSDDKPADLKA---DVVVANILAGPLKELY 240


>gi|303252375|ref|ZP_07338541.1| hypothetical protein APP2_1351 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307247683|ref|ZP_07529722.1| DNA methylase N-4/N-6 domain protein [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|302648834|gb|EFL79024.1| hypothetical protein APP2_1351 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306855786|gb|EFM87950.1| DNA methylase N-4/N-6 domain protein [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 654

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 64/204 (31%), Gaps = 27/204 (13%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLV 65
           ++E  N +      +I  ++   L  L     + V  I+ DPPYN   +G +Y+ ++   
Sbjct: 394 LDEKTNGL------LIHSDNFQALNLLQEKYKEQVKCIYIDPPYNTGEDGFIYKDNYKHS 447

Query: 66  DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
              T  +D+  +               R++L   G  +V  S     ++  +L ++    
Sbjct: 448 SWNTFIFDRVETG--------------RKLLNEQGVSFVSISDEEQDKLKFLLDDIFQGN 493

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK----AANEDVQMR 181
               V   S                  I A      K    ++         +N D   R
Sbjct: 494 YLGTVEWNSTKSVTNTALISVGHTHNYIHAKNLDYFKKNRVHFRLPDSIEGFSNSDNDPR 553

Query: 182 SDWLIPICSGSERLRNKDGEKLHP 205
             W            N+  E ++P
Sbjct: 554 GVWKADPFQVGGERPNQLYEIINP 577


>gi|294676500|ref|YP_003577115.1| cytosine-N(4)-specific DNA-methyltransferase [Rhodobacter
           capsulatus SB 1003]
 gi|294475320|gb|ADE84708.1| site-specific DNA-methyltransferase (cytosine-N(4)-specific)
           [Rhodobacter capsulatus SB 1003]
          Length = 324

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 23/45 (51%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           L          PG  +LDPF G    G VA +L R ++GIE++ +
Sbjct: 91  LCEIAYRWFCPPGGTVLDPFAGGSVRGIVAARLGRPYVGIELRAE 135


>gi|290476761|ref|YP_003469672.1| methylation of 50S ribosomal subunit protein L11 [Xenorhabdus
           bovienii SS-2004]
 gi|289176105|emb|CBJ82910.1| methylation of 50S ribosomal subunit protein L11 [Xenorhabdus
           bovienii SS-2004]
          Length = 293

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 7/108 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  +   N      S   +P       + +     G   HPT    +L  + 
Sbjct: 95  WEREWMDNFHPMCFGNRLWICPSWREVPEPDAVNVMLDPGLAFGTGTHPTT---SLCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           L      G  ++D   GSG     A KL  +  IGI++    I  +  
Sbjct: 152 LDGLDLTGKTVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAIQASRD 199


>gi|166364448|ref|YP_001656721.1| putative methyltransferase [Microcystis aeruginosa NIES-843]
 gi|166086821|dbj|BAG01529.1| putative methyltransferase [Microcystis aeruginosa NIES-843]
          Length = 181

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 8/45 (17%)

Query: 17  FEWKD--------KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
             W++        ++I+G+ ++ L  L  KS DLI+ DPPY   L
Sbjct: 78  ENWRNLATSPQQFQVIRGDVLTKLATLAGKSFDLIYFDPPYESGL 122


>gi|82776239|ref|YP_402588.1| 23S rRNA m(2)G2445 methyltransferase [Shigella dysenteriae Sd197]
 gi|309786680|ref|ZP_07681300.1| conserved hypothetical protein [Shigella dysenteriae 1617]
 gi|123563027|sp|Q32HV8|RLML_SHIDS RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|81240387|gb|ABB61097.1| putative oxidoreductase [Shigella dysenteriae Sd197]
 gi|308925373|gb|EFP70860.1| conserved hypothetical protein [Shigella dysenteriae 1617]
          Length = 702

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 22/140 (15%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +     ++I+ + ++ L +   +  DLIF DPP         +     + DA  
Sbjct: 580 NLRLNGLTGRTHRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFD 630

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
              D             A +   +R+L+  GT+    +          L  L   +    
Sbjct: 631 VQRDHL-----------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQE 677

Query: 130 VWRKSNPMPNFRGRRFQNAH 149
           + +K+      R R+  N  
Sbjct: 678 ITQKTLSQDFARNRQIHNCW 697


>gi|15669418|ref|NP_248228.1| hypothetical protein MJ_1233 [Methanocaldococcus jannaschii DSM
           2661]
 gi|41018416|sp|Q58630|Y1233_METJA RecName: Full=Uncharacterized protein MJ1233
 gi|1591865|gb|AAB99243.1| hypothetical protein MJ_1233 [Methanocaldococcus jannaschii DSM
           2661]
          Length = 288

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 27/97 (27%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
            IN     +F+   KII G++  V+++   +  D++  DPP    L G LY         
Sbjct: 173 KINPYSEELFKGGIKIILGDAYDVIKRFKDEEFDVVIHDPP-RFSLAGHLY--------- 222

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
                            +  +     RVLKP G L+ 
Sbjct: 223 -----------------SEEFYKEIFRVLKPGGRLFH 242


>gi|88811355|ref|ZP_01126610.1| adenine specific DNA-methyltransferase [Nitrococcus mobilis Nb-231]
 gi|88791244|gb|EAR22356.1| adenine specific DNA-methyltransferase [Nitrococcus mobilis Nb-231]
          Length = 217

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 52/110 (47%), Gaps = 22/110 (20%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVD----------LIFADPPYNLQ--------LNGQLYRP 60
           W +K+I G++  +L  L A ++           LI+ DPP+++         + G+ +  
Sbjct: 92  WTNKLIWGDNKLILSSLKAGALRRQIEEAGGLKLIYIDPPFDVGADFSMDIEIGGETFHK 151

Query: 61  DHSLVD--AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
           + +L++  A  D+W + +  +++ +     L+  R +L  +G + +   +
Sbjct: 152 EPNLLEQIAYRDTWGRGA--DSFISMIYERLILMRDLLAEDGVMLLHMGW 199


>gi|269214105|ref|ZP_06158356.1| type III restriction-modification system EcoPI, modification
           subunit [Neisseria cinerea ATCC 14685]
 gi|269144487|gb|EEZ70905.1| type III restriction-modification system EcoPI, modification
           subunit [Neisseria cinerea ATCC 14685]
          Length = 455

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 12/79 (15%)

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGD------IILDPFFGSGTSGAVAKKL------R 245
           +    +    KP  L++ ++  S    D      +ILD F GSGT+     +L       
Sbjct: 209 EKERAIFDFSKPYNLVADLIQISESETDKDSKDYLILDFFSGSGTTAHAVMQLNAEDGGN 268

Query: 246 RSFIGIEMKQDYIDIATKR 264
           R FI +++ ++  + +  R
Sbjct: 269 RRFICVQLPEETDEKSEAR 287


>gi|73540043|ref|YP_294563.1| hypothetical protein Reut_A0337 [Ralstonia eutropha JMP134]
 gi|72117456|gb|AAZ59719.1| Conserved hypothetical protein 95 [Ralstonia eutropha JMP134]
          Length = 214

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 31/82 (37%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++++G++ ++  ++P  S D+IF DPP+                                
Sbjct: 120 RVVQGDAFAIAAQMPDASFDVIFLDPPFA------------------------------- 148

Query: 82  DAFTRAWLLACRRVLKPNGTLW 103
           + + R  L    R+L+P G ++
Sbjct: 149 EDWLRPALEHAARLLRPGGAVY 170


>gi|256545595|ref|ZP_05472954.1| DNA (cytosine-5-)-methyltransferase [Anaerococcus vaginalis ATCC
           51170]
 gi|256398720|gb|EEU12338.1| DNA (cytosine-5-)-methyltransferase [Anaerococcus vaginalis ATCC
           51170]
          Length = 425

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 2/90 (2%)

Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
           F     +  N       D+     SG   +       +   Q    LLS I         
Sbjct: 6   FMNKIAEELNSYPDNYWDFKGITKSGIHNIGKYPATMVPDMQY--QLLSVISKHLNNKNI 63

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
            +LDPF GSGT+  +A++LR + +GI++  
Sbjct: 64  TLLDPFCGSGTTLVIAQELRINSVGIDINP 93


>gi|154149936|ref|YP_001403554.1| methyltransferase type 11 [Candidatus Methanoregula boonei 6A8]
 gi|153998488|gb|ABS54911.1| Methyltransferase type 11 [Methanoregula boonei 6A8]
          Length = 278

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 58/156 (37%), Gaps = 22/156 (14%)

Query: 214 SRILVSSTKPGDIILDPFFGSGTSG-AVAKKLRR--SFIGIEMKQDYIDIATKRIASVQP 270
             ++ +   PG  +LD   GSG     +AK + +    IGI+     ++IA  RI  +  
Sbjct: 35  RMLVDAGIGPGMHVLDVGCGSGDVSHLLAKLVGKEGHVIGIDRDGPSLEIARDRIRKL-D 93

Query: 271 LGNIELTVLT-GKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA---------DG 320
           L NI        + +     F+  V R +I       +A   ISAT+           D 
Sbjct: 94  LPNITFIQRDICELSPEPGQFDAAVARRVIMYLPEPVDAIRRISATLRPGGVVAFLEHDN 153

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLG 356
           T++ G            +   E  NGW     EK G
Sbjct: 154 TMVPGRLK--------PLPLQEKVNGWIRKTIEKEG 181


>gi|302520723|ref|ZP_07273065.1| DNA methylase [Streptomyces sp. SPB78]
 gi|302429618|gb|EFL01434.1| DNA methylase [Streptomyces sp. SPB78]
          Length = 701

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 29/82 (35%), Gaps = 14/82 (17%)

Query: 35  LPAKSVDLIFADPPY--NLQL---------NGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           LP +S+DLI  DPPY  N+             +  RP  +     T              
Sbjct: 474 LPNESIDLIVTDPPYMDNVHYAELADFFHAWLRGMRPYEAYAATATTRRTGEVQHADPME 533

Query: 84  F---TRAWLLACRRVLKPNGTL 102
           F     A    C RVLKP G L
Sbjct: 534 FGKAIEAVWSECARVLKPGGLL 555



 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA--SVQPLGNIELTVLTGKR 283
           ++LDPF GSG +G  A KL    +  ++      +  + +   +V+ L      V +  R
Sbjct: 81  VVLDPFSGSGVTGVEALKLGARAVCFDINPVATLVQRQAMQPWNVERLAAAYEAVESACR 140

Query: 284 TE 285
            E
Sbjct: 141 EE 142


>gi|269213597|ref|ZP_06158065.1| type III restriction-modification system methylation subunit
           [Neisseria cinerea ATCC 14685]
 gi|269146069|gb|EEZ72487.1| type III restriction-modification system methylation subunit
           [Neisseria cinerea ATCC 14685]
          Length = 613

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYIDIATKRIASV 268
           +   +   D+ILD F GSGT+      L       R +I +E  + +  +   R+  V
Sbjct: 339 IKIVSSKTDLILDYFAGSGTTAHAVINLNREDGGRRKYILVEQGEYFDTVLKPRVQKV 396



 Score = 40.4 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 23  IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           +I  ++   L  L A     V  I+ DPPYN   +  +Y+  +      +   D+ +
Sbjct: 52  LIHSDNFQALNLLQARYRGQVKCIYIDPPYNTDASPIIYKNGYKHSSWASLIQDRIN 108


>gi|303234403|ref|ZP_07321042.1| DNA (cytosine-5-)-methyltransferase [Finegoldia magna BVS033A4]
 gi|302494519|gb|EFL54286.1| DNA (cytosine-5-)-methyltransferase [Finegoldia magna BVS033A4]
          Length = 515

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 13/104 (12%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       V  I+ DPPY               +      ++    
Sbjct: 173 NLIIKGNNMLALSSLLERYEGQVKCIYIDPPY----------LFRKKIQEDAFKYNSNYH 222

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
              +  F +  L    ++LK  GT+W+      +  +  +  ++
Sbjct: 223 KSTWLTFIKNRLEMSWKLLKDIGTIWIHTGDDGLHYLKILCDDI 266


>gi|45657203|ref|YP_001289.1| methyltransferase DNA modification enzyme [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|45600441|gb|AAS69926.1| methyltransferase DNA modification enzyme [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 383

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 10/80 (12%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-------SWDKFSSFEAYDAF 84
           LE L   +VDL+   PP+   L+   Y  D+ L     D           FS+  A+  F
Sbjct: 240 LESLQDGTVDLVITSPPF---LDKVNYEEDNWLRYWFLDIKLPDHKKPSIFSTLNAWTDF 296

Query: 85  TRAWLLACRRVLKPNGTLWV 104
               L    RVLKP G   +
Sbjct: 297 IHDTLKELSRVLKPEGICVM 316



 Score = 41.5 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 206 TQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
                 L +  L    +K   I+LDPF G GT+   A     S I  ++    + +A  R
Sbjct: 36  ASFKPELPAFFLDKYLSKHKGIVLDPFGGRGTTSIQANLDGHSAIHNDISPMSLFLAKSR 95

Query: 265 --IASVQPLGNI 274
             I S++ +  I
Sbjct: 96  QTIPSLESMEKI 107


>gi|16272916|ref|NP_439141.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae Rd
           KW20]
 gi|1172623|sp|P44402|PRMA_HAEIN RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|1574006|gb|AAC22638.1| ribosomal protein L11 methyltransferase (prmA) [Haemophilus
           influenzae Rd KW20]
          Length = 296

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 55/169 (32%), Gaps = 14/169 (8%)

Query: 159 PKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSR 215
              + +  N+  ++         S   +P  +    + +     G   HPT    AL   
Sbjct: 95  NWEREWMDNFHPMQFGKRLWICPSWRDVPDENAVNVMLDPGLAFGTGTHPTT---ALCLE 151

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYIDIATKRIASVQPLGNI 274
            L         ++D   GSG     A KL     +GI++    I  +     + +  G  
Sbjct: 152 WLDGLDLKDKSVIDFGCGSGILAIAALKLGAKSAVGIDIDPQAILASRN---NAEQNGVT 208

Query: 275 ELTVLTGKRTEPRVAFNLLVERGLIQ-PGQILTNAQGNISATVCADGTL 322
           +   L     +P      +V   ++  P + L      IS  V  +G L
Sbjct: 209 DRLQLFLSDEKPSDLKADVVVANILAGPLKELYPI---ISQLVKPNGDL 254


>gi|260880994|ref|ZP_05893279.1| adenine specific DNA methylase Mod [Mitsuokella multacida DSM
           20544]
 gi|260850140|gb|EEX70147.1| adenine specific DNA methylase Mod [Mitsuokella multacida DSM
           20544]
          Length = 216

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 10/69 (14%)

Query: 21  DKIIKGN---SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
             +I+ +   ++ +LE L A+ VD I+ DPPYN          D    +   DS D++  
Sbjct: 127 HTLIEADNYHALQLLEYLYAEKVDCIYIDPPYNTGAR------DWKYNNDYVDSSDQYRH 180

Query: 78  FEAYDAFTR 86
            + + +F  
Sbjct: 181 SK-WLSFME 188


>gi|298380031|ref|ZP_06989636.1| RNA methylase [Escherichia coli FVEC1302]
 gi|298279729|gb|EFI21237.1| RNA methylase [Escherichia coli FVEC1302]
          Length = 689

 Score = 48.1 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 23/121 (19%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L      +I  +  N +P F
Sbjct: 637 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLGLK-AQEITQK--NALPGF 687

Query: 141 R 141
           R
Sbjct: 688 R 688


>gi|145628085|ref|ZP_01783886.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
           22.1-21]
 gi|145630071|ref|ZP_01785853.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
           R3021]
 gi|145632363|ref|ZP_01788098.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
           3655]
 gi|145634154|ref|ZP_01789865.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
           PittAA]
 gi|145638200|ref|ZP_01793810.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
           PittII]
 gi|148826374|ref|YP_001291127.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
           PittEE]
 gi|148828153|ref|YP_001292906.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
           PittGG]
 gi|229843963|ref|ZP_04464104.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
           6P18H1]
 gi|229846036|ref|ZP_04466148.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
           7P49H1]
 gi|260581943|ref|ZP_05849739.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
           NT127]
 gi|166223416|sp|A5UD93|PRMA_HAEIE RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|166223417|sp|A5UIB7|PRMA_HAEIG RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|144979860|gb|EDJ89519.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
           22.1-21]
 gi|144984352|gb|EDJ91775.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
           R3021]
 gi|144987270|gb|EDJ93800.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
           3655]
 gi|145268598|gb|EDK08591.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
           PittAA]
 gi|145272529|gb|EDK12436.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
           PittII]
 gi|148716534|gb|ABQ98744.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
           PittEE]
 gi|148719395|gb|ABR00523.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
           PittGG]
 gi|229811040|gb|EEP46757.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
           7P49H1]
 gi|229812957|gb|EEP48645.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
           6P18H1]
 gi|260095136|gb|EEW79028.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
           NT127]
 gi|301169703|emb|CBW29304.1| methylase for 50S ribosomal subunit protein L11 [Haemophilus
           influenzae 10810]
 gi|309751356|gb|ADO81340.1| Ribosomal protein L11 methyltransferase [Haemophilus influenzae
           R2866]
 gi|309973522|gb|ADO96723.1| Ribosomal protein L11 methyltransferase [Haemophilus influenzae
           R2846]
          Length = 295

 Score = 48.1 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 57/182 (31%), Gaps = 14/182 (7%)

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEK 202
            N    +         + +  N+  ++         S   +P  +    + +     G  
Sbjct: 81  SNTAYKIEQIEDKDWEREWMDNFHPMQFGKRLWICPSWRDVPDENAVNVMLDPGLAFGTG 140

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYIDIA 261
            HPT    AL    L         ++D   GSG     A KL     +GI++    I  +
Sbjct: 141 THPTT---ALCLEWLDGLDLKDKSVIDFGCGSGILAIAALKLGAKSAVGIDIDPQAILAS 197

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ-PGQILTNAQGNISATVCADG 320
                + +  G  +   L     +P      +V   ++  P + L      IS  V  +G
Sbjct: 198 RN---NAEQNGVADRLQLFLSDEKPSDLKADVVVANILAGPLKELYPI---ISQLVKPNG 251

Query: 321 TL 322
            L
Sbjct: 252 DL 253


>gi|59712995|ref|YP_205771.1| ribosomal protein L11 methyltransferase [Vibrio fischeri ES114]
 gi|197335525|ref|YP_002157181.1| ribosomal protein L11 methyltransferase [Vibrio fischeri MJ11]
 gi|81310870|sp|Q5E263|PRMA_VIBF1 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|226710127|sp|B5FC65|PRMA_VIBFM RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|59481096|gb|AAW86883.1| methylase for 50S ribosomal subunit protein L11 [Vibrio fischeri
           ES114]
 gi|197317015|gb|ACH66462.1| ribosomal protein L11 methyltransferase [Vibrio fischeri MJ11]
          Length = 294

 Score = 48.1 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 54/168 (32%), Gaps = 12/168 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   IP       + +     G   HPT    +L    
Sbjct: 96  WEREWMDNFHPMQFGKRLWICPSWREIPEPDAVNVMLDPGLAFGTGTHPTT---SLCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG     A KL     IGI++    I  +     +    G  +
Sbjct: 153 LEGLDLEGKTVVDFGCGSGILAIAAIKLGAAKVIGIDIDPQAILASKD---NATRNGVAD 209

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
              L   + +P      +V   ++     L    G I++ V   G L 
Sbjct: 210 QIELYLPQDQPEGLIADVVVANIL--AGPLRELSGIITSLVKPQGQLA 255


>gi|218553535|ref|YP_002386448.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli IAI1]
 gi|218360303|emb|CAQ97853.1| putative conserved AdoMet-dependent methyltransferase with RNA
           interaction domain [Escherichia coli IAI1]
 gi|323947262|gb|EGB43270.1| THUMP domain-containing protein [Escherichia coli H120]
          Length = 702

 Score = 48.1 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|157155561|ref|YP_001462181.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli E24377A]
 gi|218694423|ref|YP_002402090.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli 55989]
 gi|300925371|ref|ZP_07141257.1| THUMP domain protein [Escherichia coli MS 182-1]
 gi|301327224|ref|ZP_07220484.1| THUMP domain protein [Escherichia coli MS 78-1]
 gi|229560149|sp|A7ZK52|RLML_ECO24 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|157077591|gb|ABV17299.1| putative RNA methylase family UPF0020 [Escherichia coli E24377A]
 gi|218351155|emb|CAU96859.1| putative conserved AdoMet-dependent methyltransferase with RNA
           interaction domain [Escherichia coli 55989]
 gi|300418500|gb|EFK01811.1| THUMP domain protein [Escherichia coli MS 182-1]
 gi|300846175|gb|EFK73935.1| THUMP domain protein [Escherichia coli MS 78-1]
 gi|324117187|gb|EGC11095.1| THUMP domain-containing protein [Escherichia coli E1167]
 gi|332342392|gb|AEE55726.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 702

 Score = 48.1 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|288575100|ref|ZP_06393457.1| conserved hypothetical protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570841|gb|EFC92398.1| conserved hypothetical protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 948

 Score = 48.1 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP--TQKPEALL 213
            P+P    +   +++ K              P  +     +N      H   T+ P   +
Sbjct: 91  CPNPWIGQFIEEWESQKPEKPADYHYH--REPFAADVSEGKNDPIYNAHSYHTKVPHKAI 148

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
            R ++  T+PGDI+ D F G+G +G  A+   
Sbjct: 149 MRYILHYTEPGDIVFDGFCGTGMTGVAAQMCG 180



 Score = 38.8 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 34/103 (33%), Gaps = 13/103 (12%)

Query: 37  AKSVDLIFADPPYNLQLNGQ---------LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
             SVD IF DPP+   LN           L    ++  +A+ +S  +      Y      
Sbjct: 519 NNSVDYIFTDPPFGANLNYSELSFIWESWLKVWTNNKPEAIENSV-QGKGATEYRNLMAG 577

Query: 88  WLLACRRVLKPNGTL---WVIGSYHNIFRIGTMLQNLNFWILN 127
                 RVLKP   +   +          I T L    F + N
Sbjct: 578 CFKEAYRVLKPGRWMTVEFSNTKASVWSSIQTALTEAGFIVAN 620


>gi|146329329|ref|YP_001209109.1| S-adenosyl-L-methionine-dependent methyltransferases family protein
           VrlL [Dichelobacter nodosus VCS1703A]
 gi|2317805|gb|AAC33381.1| putative N6-adeinine specific methyltransferase [Dichelobacter
           nodosus]
 gi|146232799|gb|ABQ13777.1| S-adenosyl-L-methionine-dependent methyltransferases family protein
           VrlL [Dichelobacter nodosus VCS1703A]
          Length = 929

 Score = 48.1 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP--TQKPEALL 213
            P+P    +   +D  K    +         P  +     +N      H   T+ P   +
Sbjct: 77  CPNPWIADFIAEWDEQKPKQPEGHHYH--REPFAADVSEGKNDPIYNAHSYHTKVPHKAI 134

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
            R ++  T+PGDI+ D F G+G +G  A+   
Sbjct: 135 MRYILHYTQPGDIVFDGFCGTGMTGVAAQMCG 166


>gi|260580069|ref|ZP_05847899.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
           RdAW]
 gi|260093353|gb|EEW77286.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
           RdAW]
          Length = 295

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 57/182 (31%), Gaps = 14/182 (7%)

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEK 202
            N    +         + +  N+  ++         S   +P  +    + +     G  
Sbjct: 81  SNTAYKIEQIEDKDWEREWMDNFHPMQFGKRLWICPSWRDVPDENAVNVMLDPGLAFGTG 140

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYIDIA 261
            HPT    AL    L         ++D   GSG     A KL     +GI++    I  +
Sbjct: 141 THPTT---ALCLEWLDGLDLKDKSVIDFGCGSGILAIAALKLGAKSAVGIDIDPQAILAS 197

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ-PGQILTNAQGNISATVCADG 320
                + +  G  +   L     +P      +V   ++  P + L      IS  V  +G
Sbjct: 198 RN---NAEQNGVTDRLQLFLSDEKPSDLKADVVVANILAGPLKELYPI---ISQLVKPNG 251

Query: 321 TL 322
            L
Sbjct: 252 DL 253


>gi|193064614|ref|ZP_03045693.1| putative RNA methylase family UPF0020 [Escherichia coli E22]
 gi|192927671|gb|EDV82286.1| putative RNA methylase family UPF0020 [Escherichia coli E22]
          Length = 702

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|289581292|ref|YP_003479758.1| DNA methylase N-4/N-6 domain protein [Natrialba magadii ATCC 43099]
 gi|289530845|gb|ADD05196.1| DNA methylase N-4/N-6 domain protein [Natrialba magadii ATCC 43099]
          Length = 414

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 15/74 (20%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE--------------- 252
            P AL + +L   T P   +LDPF G GT+   A  L R  +  +               
Sbjct: 48  FPPALANYLLQQYTDPEMTVLDPFSGGGTTALEASLLDRDVLASDVFSYACTLTGAKTHP 107

Query: 253 MKQDYIDIATKRIA 266
           + +D  D A KR+ 
Sbjct: 108 LTEDEFDAALKRVK 121



 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 7/98 (7%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH-----SLVDAVTDSWDKFSSFE 79
           + ++ S+       + D +   PPY   L+                 A  DS ++ S  E
Sbjct: 241 QADATSL--PFEDDTADFVLTSPPYMHMLDYSWNNWLRLWWLDEDRSAEQDSLNQTSKVE 298

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
            + +F    +    RVLK +    ++       R G  
Sbjct: 299 LFRSFMTDVIAELDRVLKSDARAIIVIGDVRKHRQGGA 336


>gi|191166960|ref|ZP_03028783.1| putative RNA methylase family UPF0020 [Escherichia coli B7A]
 gi|193071757|ref|ZP_03052654.1| putative RNA methylase family UPF0020 [Escherichia coli E110019]
 gi|209918200|ref|YP_002292284.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli SE11]
 gi|256018793|ref|ZP_05432658.1| 23S rRNA m(2)G2445 methyltransferase [Shigella sp. D9]
 gi|260843197|ref|YP_003220975.1| putative methyltransferase [Escherichia coli O103:H2 str. 12009]
 gi|293433245|ref|ZP_06661673.1| oxidoreductase [Escherichia coli B088]
 gi|309795062|ref|ZP_07689482.1| THUMP domain protein [Escherichia coli MS 145-7]
 gi|332279871|ref|ZP_08392284.1| 23S rRNA m(2) methyltransferase [Shigella sp. D9]
 gi|190902954|gb|EDV62680.1| putative RNA methylase family UPF0020 [Escherichia coli B7A]
 gi|192954931|gb|EDV85437.1| putative RNA methylase family UPF0020 [Escherichia coli E110019]
 gi|209911459|dbj|BAG76533.1| putative oxidoreductase [Escherichia coli SE11]
 gi|257758344|dbj|BAI29841.1| predicted methyltransferase [Escherichia coli O103:H2 str. 12009]
 gi|291324064|gb|EFE63486.1| oxidoreductase [Escherichia coli B088]
 gi|308121366|gb|EFO58628.1| THUMP domain protein [Escherichia coli MS 145-7]
 gi|323159579|gb|EFZ45559.1| hypothetical protein ECE128010_4195 [Escherichia coli E128010]
 gi|323174945|gb|EFZ60560.1| hypothetical protein ECLT68_0502 [Escherichia coli LT-68]
 gi|323185341|gb|EFZ70705.1| hypothetical protein ECOK1357_1294 [Escherichia coli 1357]
 gi|324019040|gb|EGB88259.1| THUMP domain protein [Escherichia coli MS 117-3]
 gi|332102223|gb|EGJ05569.1| 23S rRNA m(2) methyltransferase [Shigella sp. D9]
          Length = 702

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|121608912|ref|YP_996719.1| hypothetical protein Veis_1948 [Verminephrobacter eiseniae EF01-2]
 gi|121553552|gb|ABM57701.1| conserved hypothetical protein [Verminephrobacter eiseniae EF01-2]
          Length = 731

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 35/118 (29%), Gaps = 20/118 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYN---------------LQLNGQLYRPDHSLVDA 67
           I+ G+S  +   +P  SVD +  DPPY                L    +   P  +  ++
Sbjct: 481 ILNGDSSKL--PIPDSSVDAVVTDPPYFDFVHYSELSDFFFAWLSPALRDRYPWFARENS 538

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL---WVIGSYHNIFRIGTMLQNLN 122
                 +     A+     +      RVLK  G L   +          I   +    
Sbjct: 539 SDQGEVQHKDPRAFARQLASVFTEACRVLKDEGVLAFSFHHSRAEGWAAIYEAITKAG 596



 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++LDPF GSGT+   A KL    +G ++  
Sbjct: 89  VVLDPFMGSGTTLGEAVKLGAKAVGSDINP 118


>gi|15602169|ref|NP_245241.1| 23S rRNA m(2)G2445 methyltransferase [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|81856764|sp|Q9CNW9|RLML_PASMU RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|12720539|gb|AAK02388.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 719

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 20/98 (20%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N +   + K+I+ + +  L +   +  DLIF DPP              S    + DSWD
Sbjct: 598 NDLEGKQHKLIQADCLQWLARC-DRQFDLIFVDPP------------TFSNSKRMEDSWD 644

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
                          +   +R+L+PNGT+    +    
Sbjct: 645 VQRDHI-------KLMTQLKRILRPNGTIVFSNNKRGF 675


>gi|312966021|ref|ZP_07780247.1| DNA methylase family protein [Escherichia coli 2362-75]
 gi|312289264|gb|EFR17158.1| DNA methylase family protein [Escherichia coli 2362-75]
          Length = 1039

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 12/136 (8%)

Query: 145 FQNAHETLIWASPSPKAKGYTFN--YDALKAANEDVQMRSDWLIPIC----SGSERLRNK 198
           ++N  E+ +  +     K    N          E    ++ W+        +G+  L+N 
Sbjct: 688 WKNIKESFVELNKDNYFKAVNENGEIKIYHKYREQQVFKNLWIDKKYQSEFNGTNLLKNI 747

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIE 252
            G+ L    K    +   +  ST    I+LD F GSGT+      L         FI +E
Sbjct: 748 LGQSLFDYPKSLYAVQDAIKMSTPHNGIVLDYFAGSGTTSHAVINLNNSDNLCMKFINVE 807

Query: 253 MKQDYIDIATKRIASV 268
           M   +  +   R+  +
Sbjct: 808 MGTHFNTVVIPRLKKI 823



 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 53/147 (36%), Gaps = 18/147 (12%)

Query: 23  IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +I  ++   +  L      S+D ++ DPPYN   +  LY+ ++                 
Sbjct: 480 LINSDNYQAINFLEGRYKDSIDCLYIDPPYNTAASEILYKNEYK--------------HS 525

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMP 138
           ++++     +     +LK +   +    +  ++ +G +   +        +V  + NP  
Sbjct: 526 SWNSLMYERISKSYNLLKISAINFTAIDHAELYNLGKIKDEIYGEQNRIAVVTVQHNPKG 585

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYT 165
             + + F    E ++  +    A  + 
Sbjct: 586 RNQAKFFSENTEYMLVYAKDFNAANFN 612


>gi|302754564|ref|XP_002960706.1| hypothetical protein SELMODRAFT_402005 [Selaginella moellendorffii]
 gi|300171645|gb|EFJ38245.1| hypothetical protein SELMODRAFT_402005 [Selaginella moellendorffii]
          Length = 666

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           G+GT+   A    R  IG+E  ++  D A +RIAS
Sbjct: 613 GTGTTLLAALDSGRHVIGMEKNEELTDFAKQRIAS 647


>gi|253774023|ref|YP_003036854.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161062|ref|YP_003044170.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli B str.
           REL606]
 gi|242376763|emb|CAQ31476.1| 23S rRNA m[2]G2445 methyltransferase [Escherichia coli BL21(DE3)]
 gi|253325067|gb|ACT29669.1| putative RNA methylase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972963|gb|ACT38634.1| predicted methyltransferase [Escherichia coli B str. REL606]
 gi|253977177|gb|ACT42847.1| predicted methyltransferase [Escherichia coli BL21(DE3)]
          Length = 702

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|134046552|ref|YP_001098037.1| putative RNA methylase [Methanococcus maripaludis C5]
 gi|132664177|gb|ABO35823.1| putative RNA methylase [Methanococcus maripaludis C5]
          Length = 350

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 9/120 (7%)

Query: 203 LHP-TQKPEALLSRILVSST--KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
            HP    P+  L+R LV+ +  K  +I+LDPF G+G     A  L    IG ++ +  + 
Sbjct: 183 FHPGCIMPK--LARCLVNLSRVKEREIVLDPFCGTGGFLIEAGFLGCKLIGSDIDEQMVK 240

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A   + +     ++   V++ K+ + +     L E G+ +   I+T+    IS     D
Sbjct: 241 GAILNLKTY----DLSKQVISIKQNDAKNVSKYLEELGIEKIDGIVTDPPYGISTLKKGD 296


>gi|116327816|ref|YP_797536.1| DNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116331372|ref|YP_801090.1| DNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116120560|gb|ABJ78603.1| DNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116125061|gb|ABJ76332.1| DNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 383

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 10/80 (12%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-------SWDKFSSFEAYDAF 84
           LE +     DL+   PP+   L+   Y  D+ L     D           FS+ +A+  F
Sbjct: 240 LESMEDGIADLVVTSPPF---LDKVNYEEDNWLRYWFLDIELPDHKKPSIFSTLDAWMEF 296

Query: 85  TRAWLLACRRVLKPNGTLWV 104
            R  L    RVLK NG   +
Sbjct: 297 IRETLKELSRVLKSNGVCVM 316



 Score = 43.4 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 206 TQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
                 L +  L    +K   ++LDPF G GT+   A       I  ++    + +A  R
Sbjct: 36  ASFKPELPAFFLDRYLSKNKGVVLDPFGGRGTTSIQANLEGHFAIHNDISPMSLFLARSR 95

Query: 265 --IASVQPLGNI-ELTVLTGKRTEPRVAFNLL 293
             I S+  +  I +   L  K  E +   +LL
Sbjct: 96  QTIPSLDSMERILDRLDLKKKTQEEKEDKDLL 127


>gi|82544728|ref|YP_408675.1| 23S rRNA m(2)G2445 methyltransferase [Shigella boydii Sb227]
 gi|123559168|sp|Q31YL1|RLML_SHIBS RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|81246139|gb|ABB66847.1| putative oxidoreductase [Shigella boydii Sb227]
 gi|320187159|gb|EFW61860.1| putative RNA methylase family UPF0020 [Shigella flexneri CDC
           796-83]
 gi|332093430|gb|EGI98488.1| hypothetical protein SB359474_2639 [Shigella boydii 3594-74]
          Length = 702

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|333001212|gb|EGK20780.1| hypothetical protein SFVA6_2930 [Shigella flexneri VA-6]
 gi|333008933|gb|EGK28393.1| hypothetical protein SFK272_1451 [Shigella flexneri K-272]
 gi|333020245|gb|EGK39515.1| hypothetical protein SFK227_1180 [Shigella flexneri K-227]
          Length = 702

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 22/140 (15%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +     ++I+ + ++ L +   +  DLIF DPP         +     + DA  
Sbjct: 580 NLRLNGLTRRAHRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFD 630

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
              D             A +   +R+L+  GT+    +          L  L   +    
Sbjct: 631 VQRDHL-----------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQE 677

Query: 130 VWRKSNPMPNFRGRRFQNAH 149
           + +K+      R R+  N  
Sbjct: 678 ITQKTLSQDFARNRQIHNCW 697


>gi|222869694|gb|EEF06825.1| ABC transporter family protein [Populus trichocarpa]
          Length = 425

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 12/108 (11%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D  +  + 
Sbjct: 23  HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHLALMKD 73

Query: 81  YDAFTRA---WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
                RA    L   R +     +L  +      F    +L N    I
Sbjct: 74  LKRLLRADPQLLADYRSLKGIVMSLISMHGAWLSFSDAPLLDNAELHI 121


>gi|218548457|ref|YP_002382248.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia fergusonii ATCC
           35469]
 gi|218355998|emb|CAQ88614.1| putative conserved AdoMet-dependent methyltransferase with RNA
           interaction domain [Escherichia fergusonii ATCC 35469]
          Length = 702

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|25053799|gb|AAN71898.1| putative type III DNA methyltransferase [Helicobacter pylori]
          Length = 261

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 14/80 (17%)

Query: 42  LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
            I+ DPPYN   +   Y              D F +  ++  F +  L A R  L  +G 
Sbjct: 190 CIYIDPPYNTGNDSFNY-------------NDNF-NHSSWLVFMKNRLEAAREFLSDDGV 235

Query: 102 LWVIGSYHNIFRIGTMLQNL 121
           ++V    +    +  ++  +
Sbjct: 236 IFVQCDDNEQAYLKVLMDEI 255


>gi|24112361|ref|NP_706871.1| 23S rRNA m(2)G2445 methyltransferase [Shigella flexneri 2a str.
           301]
 gi|30062485|ref|NP_836656.1| 23S rRNA m(2)G2445 methyltransferase [Shigella flexneri 2a str.
           2457T]
 gi|110804964|ref|YP_688484.1| 23S rRNA m(2)G2445 methyltransferase [Shigella flexneri 5 str.
           8401]
 gi|81839435|sp|Q83RX5|RLML_SHIFL RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|123048306|sp|Q0T686|RLML_SHIF8 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|24051228|gb|AAN42578.1| putative oxidoreductase [Shigella flexneri 2a str. 301]
 gi|30040731|gb|AAP16462.1| putative oxidoreductase [Shigella flexneri 2a str. 2457T]
 gi|110614512|gb|ABF03179.1| putative oxidoreductase [Shigella flexneri 5 str. 8401]
 gi|281600310|gb|ADA73294.1| putative oxidoreductase [Shigella flexneri 2002017]
 gi|313650804|gb|EFS15205.1| RNA methylase family UPF0020 family protein [Shigella flexneri 2a
           str. 2457T]
 gi|332759043|gb|EGJ89353.1| hypothetical protein SF434370_1210 [Shigella flexneri 4343-70]
 gi|332759960|gb|EGJ90261.1| hypothetical protein SF274771_1235 [Shigella flexneri 2747-71]
 gi|332762730|gb|EGJ92993.1| hypothetical protein SFK671_1125 [Shigella flexneri K-671]
 gi|332767742|gb|EGJ97933.1| 23S rRNA methyltransferase [Shigella flexneri 2930-71]
 gi|333006323|gb|EGK25832.1| hypothetical protein SFK218_1429 [Shigella flexneri K-218]
 gi|333019962|gb|EGK39233.1| hypothetical protein SFK304_1289 [Shigella flexneri K-304]
          Length = 702

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 22/140 (15%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +     ++I+ + ++ L +   +  DLIF DPP         +     + DA  
Sbjct: 580 NLRLNGLTRRAHRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFD 630

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
              D             A +   +R+L+  GT+    +          L  L   +    
Sbjct: 631 VQRDHL-----------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQE 677

Query: 130 VWRKSNPMPNFRGRRFQNAH 149
           + +K+      R R+  N  
Sbjct: 678 ITQKTLSQDFARNRQIHNCW 697


>gi|187734195|ref|YP_001880855.1| 23S rRNA m(2)G2445 methyltransferase [Shigella boydii CDC 3083-94]
 gi|238691686|sp|B2TUD1|RLML_SHIB3 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|187431187|gb|ACD10461.1| putative RNA methylase family UPF0020 [Shigella boydii CDC 3083-94]
          Length = 702

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|323976672|gb|EGB71760.1| THUMP domain-containing protein [Escherichia coli TW10509]
          Length = 702

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|257061820|ref|YP_003139708.1| hypothetical protein Cyan8802_4077 [Cyanothece sp. PCC 8802]
 gi|256591986|gb|ACV02873.1| hypothetical protein Cyan8802_4077 [Cyanothece sp. PCC 8802]
          Length = 614

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           L+            ++D F GSGT+   A  L    IGI++    + IA  +I
Sbjct: 215 LNICRQRLGDESHRVIDCFSGSGTTMLEAAILGMESIGIDIDPLSVLIAQNKI 267


>gi|332095880|gb|EGJ00887.1| hypothetical protein SD15574_1293 [Shigella dysenteriae 155-74]
          Length = 702

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|300949682|ref|ZP_07163664.1| THUMP domain protein [Escherichia coli MS 116-1]
 gi|300450922|gb|EFK14542.1| THUMP domain protein [Escherichia coli MS 116-1]
          Length = 702

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|293409326|ref|ZP_06652902.1| conserved hypothetical protein [Escherichia coli B354]
 gi|300824163|ref|ZP_07104282.1| THUMP domain protein [Escherichia coli MS 119-7]
 gi|300902889|ref|ZP_07120834.1| THUMP domain protein [Escherichia coli MS 84-1]
 gi|300921012|ref|ZP_07137399.1| THUMP domain protein [Escherichia coli MS 115-1]
 gi|301023076|ref|ZP_07186883.1| THUMP domain protein [Escherichia coli MS 69-1]
 gi|301302436|ref|ZP_07208567.1| THUMP domain protein [Escherichia coli MS 124-1]
 gi|331651970|ref|ZP_08352989.1| putative oxidoreductase [Escherichia coli M718]
 gi|331662359|ref|ZP_08363282.1| putative oxidoreductase [Escherichia coli TA143]
 gi|331667330|ref|ZP_08368195.1| putative oxidoreductase [Escherichia coli TA271]
 gi|331676738|ref|ZP_08377434.1| putative oxidoreductase [Escherichia coli H591]
 gi|331682452|ref|ZP_08383071.1| putative oxidoreductase [Escherichia coli H299]
 gi|284920792|emb|CBG33855.1| putative RNA methylase [Escherichia coli 042]
 gi|291469794|gb|EFF12278.1| conserved hypothetical protein [Escherichia coli B354]
 gi|300397197|gb|EFJ80735.1| THUMP domain protein [Escherichia coli MS 69-1]
 gi|300405031|gb|EFJ88569.1| THUMP domain protein [Escherichia coli MS 84-1]
 gi|300412003|gb|EFJ95313.1| THUMP domain protein [Escherichia coli MS 115-1]
 gi|300523339|gb|EFK44408.1| THUMP domain protein [Escherichia coli MS 119-7]
 gi|300842275|gb|EFK70035.1| THUMP domain protein [Escherichia coli MS 124-1]
 gi|315257995|gb|EFU37963.1| THUMP domain protein [Escherichia coli MS 85-1]
 gi|325496879|gb|EGC94738.1| hypothetical protein ECD227_0976 [Escherichia fergusonii ECD227]
 gi|331050248|gb|EGI22306.1| putative oxidoreductase [Escherichia coli M718]
 gi|331060781|gb|EGI32745.1| putative oxidoreductase [Escherichia coli TA143]
 gi|331065686|gb|EGI37579.1| putative oxidoreductase [Escherichia coli TA271]
 gi|331075427|gb|EGI46725.1| putative oxidoreductase [Escherichia coli H591]
 gi|331080083|gb|EGI51262.1| putative oxidoreductase [Escherichia coli H299]
          Length = 702

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|91210043|ref|YP_540029.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli UTI89]
 gi|117623159|ref|YP_852072.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli APEC O1]
 gi|218557846|ref|YP_002390759.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli S88]
 gi|237707069|ref|ZP_04537550.1| YcbY [Escherichia sp. 3_2_53FAA]
 gi|122424335|sp|Q1RDR6|RLML_ECOUT RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|229560151|sp|A1A9L8|RLML_ECOK1 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|91071617|gb|ABE06498.1| hypothetical protein YcbY [Escherichia coli UTI89]
 gi|115512283|gb|ABJ00358.1| YcbY [Escherichia coli APEC O1]
 gi|218364615|emb|CAR02301.1| putative conserved AdoMet-dependent methyltransferase with RNA
           interaction domain [Escherichia coli S88]
 gi|226898279|gb|EEH84538.1| YcbY [Escherichia sp. 3_2_53FAA]
 gi|294489485|gb|ADE88241.1| putative RNA methylase family UPF0020 [Escherichia coli IHE3034]
 gi|307627632|gb|ADN71936.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli UM146]
 gi|315287572|gb|EFU46978.1| THUMP domain protein [Escherichia coli MS 110-3]
 gi|323953350|gb|EGB49216.1| THUMP domain-containing protein [Escherichia coli H252]
 gi|323958247|gb|EGB53956.1| THUMP domain-containing protein [Escherichia coli H263]
          Length = 702

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|16128915|ref|NP_415468.1| 23S rRNA mG2445 methyltransferase, SAM-dependent [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89107798|ref|AP_001578.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
           W3110]
 gi|157160469|ref|YP_001457787.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli HS]
 gi|170020651|ref|YP_001725605.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli ATCC 8739]
 gi|170080606|ref|YP_001729926.1| 23S rRNA m2G2445 methyltransferase [Escherichia coli str. K-12
           substr. DH10B]
 gi|188492332|ref|ZP_02999602.1| putative methyltransferase [Escherichia coli 53638]
 gi|194440185|ref|ZP_03072229.1| putative RNA methylase family UPF0020 [Escherichia coli 101-1]
 gi|238900206|ref|YP_002926002.1| putative methyltransferase [Escherichia coli BW2952]
 gi|256023350|ref|ZP_05437215.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia sp. 4_1_40B]
 gi|300929647|ref|ZP_07145108.1| THUMP domain protein [Escherichia coli MS 187-1]
 gi|300955398|ref|ZP_07167774.1| THUMP domain protein [Escherichia coli MS 175-1]
 gi|301022470|ref|ZP_07186349.1| THUMP domain protein [Escherichia coli MS 196-1]
 gi|301643471|ref|ZP_07243519.1| THUMP domain protein [Escherichia coli MS 146-1]
 gi|312971081|ref|ZP_07785260.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|2501582|sp|P75864|RLML_ECOLI RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|229560150|sp|B1X8Q2|RLML_ECODH RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|238686818|sp|A7ZYQ0|RLML_ECOHS RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|238688381|sp|B1IVY4|RLML_ECOLC RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|1787181|gb|AAC74034.1| 23S rRNA mG2445 methyltransferase, SAM-dependent [Escherichia coli
           str. K-12 substr. MG1655]
 gi|4062515|dbj|BAA35703.1| predicted methyltransferase [Escherichia coli str. K12 substr.
           W3110]
 gi|157066149|gb|ABV05404.1| putative RNA methylase family UPF0020 [Escherichia coli HS]
 gi|169755579|gb|ACA78278.1| putative RNA methylase [Escherichia coli ATCC 8739]
 gi|169888441|gb|ACB02148.1| 23S rRNA m2G2445 methyltransferase [Escherichia coli str. K-12
           substr. DH10B]
 gi|188487531|gb|EDU62634.1| putative methyltransferase [Escherichia coli 53638]
 gi|194420882|gb|EDX36925.1| putative RNA methylase family UPF0020 [Escherichia coli 101-1]
 gi|238862667|gb|ACR64665.1| predicted methyltransferase [Escherichia coli BW2952]
 gi|260449906|gb|ACX40328.1| putative RNA methylase [Escherichia coli DH1]
 gi|299881233|gb|EFI89444.1| THUMP domain protein [Escherichia coli MS 196-1]
 gi|300317687|gb|EFJ67471.1| THUMP domain protein [Escherichia coli MS 175-1]
 gi|300462424|gb|EFK25917.1| THUMP domain protein [Escherichia coli MS 187-1]
 gi|301078185|gb|EFK92991.1| THUMP domain protein [Escherichia coli MS 146-1]
 gi|309701227|emb|CBJ00527.1| putative RNA methylase [Escherichia coli ETEC H10407]
 gi|310336842|gb|EFQ02009.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|315135596|dbj|BAJ42755.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli DH1]
 gi|315619145|gb|EFU99725.1| conserved hypothetical protein [Escherichia coli 3431]
 gi|323938054|gb|EGB34316.1| THUMP domain-containing protein [Escherichia coli E1520]
 gi|323942864|gb|EGB39029.1| THUMP domain-containing protein [Escherichia coli E482]
 gi|323962835|gb|EGB58410.1| THUMP domain-containing protein [Escherichia coli H489]
 gi|323973175|gb|EGB68367.1| THUMP domain-containing protein [Escherichia coli TA007]
          Length = 702

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|323967195|gb|EGB62619.1| THUMP domain-containing protein [Escherichia coli M863]
 gi|324113728|gb|EGC07703.1| THUMP domain-containing protein [Escherichia fergusonii B253]
 gi|327253740|gb|EGE65369.1| hypothetical protein ECSTEC7V_1165 [Escherichia coli STEC_7v]
          Length = 702

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|323190762|gb|EFZ76031.1| hypothetical protein ECRN5871_1001 [Escherichia coli RN587/1]
          Length = 702

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|320176238|gb|EFW51299.1| putative RNA methylase [Shigella dysenteriae CDC 74-1112]
          Length = 702

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|331657013|ref|ZP_08357975.1| putative oxidoreductase [Escherichia coli TA206]
 gi|315296242|gb|EFU55549.1| THUMP domain protein [Escherichia coli MS 16-3]
 gi|331055261|gb|EGI27270.1| putative oxidoreductase [Escherichia coli TA206]
          Length = 702

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|306812605|ref|ZP_07446798.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli NC101]
 gi|305853368|gb|EFM53807.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli NC101]
          Length = 702

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|300937703|ref|ZP_07152505.1| THUMP domain protein [Escherichia coli MS 21-1]
 gi|300457264|gb|EFK20757.1| THUMP domain protein [Escherichia coli MS 21-1]
          Length = 702

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|281178072|dbj|BAI54402.1| putative oxidoreductase [Escherichia coli SE15]
          Length = 702

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|218704371|ref|YP_002411890.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli UMN026]
 gi|293404247|ref|ZP_06648241.1| rlmL [Escherichia coli FVEC1412]
 gi|300896327|ref|ZP_07114870.1| THUMP domain protein [Escherichia coli MS 198-1]
 gi|218431468|emb|CAR12346.1| putative conserved AdoMet-dependent methyltransferase with RNA
           interaction domain [Escherichia coli UMN026]
 gi|291428833|gb|EFF01858.1| rlmL [Escherichia coli FVEC1412]
 gi|300359792|gb|EFJ75662.1| THUMP domain protein [Escherichia coli MS 198-1]
          Length = 702

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|26246969|ref|NP_753009.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli CFT073]
 gi|215486066|ref|YP_002328497.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218688784|ref|YP_002396996.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli ED1a]
 gi|227884093|ref|ZP_04001898.1| N6-adenine-specific DNA methytransferase [Escherichia coli 83972]
 gi|300978391|ref|ZP_07174242.1| THUMP domain protein [Escherichia coli MS 45-1]
 gi|301047795|ref|ZP_07194848.1| THUMP domain protein [Escherichia coli MS 185-1]
 gi|312968993|ref|ZP_07783200.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|81846697|sp|Q8FJ88|RLML_ECOL6 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|26107369|gb|AAN79552.1|AE016758_156 Hypothetical protein ycbY [Escherichia coli CFT073]
 gi|215264138|emb|CAS08482.1| predicted methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218426348|emb|CAR07173.1| putative conserved AdoMet-dependent methyltransferase with RNA
           interaction domain [Escherichia coli ED1a]
 gi|227838845|gb|EEJ49311.1| N6-adenine-specific DNA methytransferase [Escherichia coli 83972]
 gi|300300327|gb|EFJ56712.1| THUMP domain protein [Escherichia coli MS 185-1]
 gi|300409679|gb|EFJ93217.1| THUMP domain protein [Escherichia coli MS 45-1]
 gi|307552780|gb|ADN45555.1| putative oxidoreductase [Escherichia coli ABU 83972]
 gi|312286395|gb|EFR14308.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|315291202|gb|EFU50562.1| THUMP domain protein [Escherichia coli MS 153-1]
          Length = 702

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|15800807|ref|NP_286823.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O157:H7
           EDL933]
 gi|15830286|ref|NP_309059.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O157:H7 str.
           Sakai]
 gi|168762913|ref|ZP_02787920.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
           str. EC4501]
 gi|168776197|ref|ZP_02801204.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
           str. EC4196]
 gi|168783959|ref|ZP_02808966.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
           str. EC4076]
 gi|168787379|ref|ZP_02812386.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
           str. EC869]
 gi|168802930|ref|ZP_02827937.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
           str. EC508]
 gi|195939638|ref|ZP_03085020.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O157:H7 str.
           EC4024]
 gi|208809391|ref|ZP_03251728.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
           str. EC4206]
 gi|208816186|ref|ZP_03257365.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
           str. EC4045]
 gi|209398993|ref|YP_002269617.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
           str. EC4115]
 gi|217324956|ref|ZP_03441040.1| UPF0020, RNA methylase family [Escherichia coli O157:H7 str.
           TW14588]
 gi|254792148|ref|YP_003076985.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O157:H7 str.
           TW14359]
 gi|261227451|ref|ZP_05941732.1| 23S rRNA m2G2445 methyltransferase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256126|ref|ZP_05948659.1| 23S rRNA m2G2445 methyltransferase [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291281948|ref|YP_003498766.1| putative RNA methylase family UPF0020 [Escherichia coli O55:H7 str.
           CB9615]
 gi|81849038|sp|Q8XDB2|RLML_ECO57 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|238056566|sp|B5YT79|RLML_ECO5E RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|12514130|gb|AAG55434.1|AE005285_1 putative oxidoreductase [Escherichia coli O157:H7 str. EDL933]
 gi|13360492|dbj|BAB34455.1| putative oxidoreductase [Escherichia coli O157:H7 str. Sakai]
 gi|187768361|gb|EDU32205.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
           str. EC4196]
 gi|188998771|gb|EDU67757.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
           str. EC4076]
 gi|189366794|gb|EDU85210.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
           str. EC4501]
 gi|189372718|gb|EDU91134.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
           str. EC869]
 gi|189375248|gb|EDU93664.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
           str. EC508]
 gi|208729192|gb|EDZ78793.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
           str. EC4206]
 gi|208732834|gb|EDZ81522.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
           str. EC4045]
 gi|209160393|gb|ACI37826.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
           str. EC4115]
 gi|209774528|gb|ACI85576.1| putative oxidoreductase [Escherichia coli]
 gi|209774530|gb|ACI85577.1| putative oxidoreductase [Escherichia coli]
 gi|209774532|gb|ACI85578.1| putative oxidoreductase [Escherichia coli]
 gi|209774534|gb|ACI85579.1| putative oxidoreductase [Escherichia coli]
 gi|209774536|gb|ACI85580.1| putative oxidoreductase [Escherichia coli]
 gi|217321177|gb|EEC29601.1| UPF0020, RNA methylase family [Escherichia coli O157:H7 str.
           TW14588]
 gi|254591548|gb|ACT70909.1| 23S rRNA m2G2445 methyltransferase [Escherichia coli O157:H7 str.
           TW14359]
 gi|290761821|gb|ADD55782.1| Putative RNA methylase family UPF0020 [Escherichia coli O55:H7 str.
           CB9615]
 gi|320192563|gb|EFW67204.1| 23S rRNA methyltransferase [Escherichia coli O157:H7 str. EC1212]
 gi|320637816|gb|EFX07608.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O157:H7 str.
           G5101]
 gi|320642941|gb|EFX12142.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O157:H- str.
           493-89]
 gi|320648398|gb|EFX17053.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O157:H- str.
           H 2687]
 gi|320653714|gb|EFX21788.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320664328|gb|EFX31479.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326338155|gb|EGD61984.1| putative RNA methylase [Escherichia coli O157:H7 str. 1125]
 gi|326346132|gb|EGD69870.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
           str. 1044]
          Length = 702

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|329121579|ref|ZP_08250200.1| type III restriction/modification enzyme [Dialister micraerophilus
           DSM 19965]
 gi|327468734|gb|EGF14211.1| type III restriction/modification enzyme [Dialister micraerophilus
           DSM 19965]
          Length = 127

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 14/85 (16%)

Query: 37  AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
              V  I+ DPPYN   +   Y              D F +   +  F +  L   R++L
Sbjct: 40  EGKVKCIYIDPPYNTGNDSFNY-------------NDNF-NHSTWLTFMKNRLELARKLL 85

Query: 97  KPNGTLWVIGSYHNIFRIGTMLQNL 121
           + +G ++V    +    +  ++ ++
Sbjct: 86  RDDGVIFVQCDDNEQAYLKVLMDDI 110


>gi|312945461|gb|ADR26288.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O83:H1 str.
           NRG 857C]
          Length = 702

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|222032672|emb|CAP75411.1| UPF0020/UPF0064 protein ycbY [Escherichia coli LF82]
          Length = 702

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|259908891|ref|YP_002649247.1| 23S rRNA m(2)G2445 methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|224964513|emb|CAX56023.1| Putative RNA methylase [Erwinia pyrifoliae Ep1/96]
          Length = 705

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 22/140 (15%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++++ + +S L     +  DLIF DPP         +     + ++  
Sbjct: 580 NMRLNGLSGRQHRLMQADCLSWLRD-ADEQFDLIFIDPP--------TFSNSKRMEESFD 630

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
              D               +   +R+L+ NGT+    +          LQ L   +    
Sbjct: 631 VQRDHL-----------ELMKDLKRLLRKNGTVMFSNNKRGFKMDFAGLQALG--LAASE 677

Query: 130 VWRKSNPMPNFRGRRFQNAH 149
           +  K+      R R   N  
Sbjct: 678 ITAKTQSQDFARNRHIHNCW 697


>gi|218133355|ref|ZP_03462159.1| hypothetical protein BACPEC_01220 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992228|gb|EEC58232.1| hypothetical protein BACPEC_01220 [Bacteroides pectinophilus ATCC
           43243]
          Length = 460

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 63/169 (37%), Gaps = 21/169 (12%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLV 65
           I E+       ++  I+G+++ VL+ L      ++ +I+ DPPYN   N  +Y     + 
Sbjct: 18  IPEDSKDADTTENLYIEGDNLEVLKLLRQNYYGAIKMIYIDPPYNTG-NDFVYNDSFEMS 76

Query: 66  DAVTDSWDKFSS----------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
           ++ ++  +   S                   + +   + L   + +L  +G + +    H
Sbjct: 77  ESESNIVEGTISVVGEKYVINSASTNKYHAKWLSMLYSRLKIAKDLLSDDGIISISIDEH 136

Query: 110 NIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
               +  + + +         +  KSNP  +       + HE L+  + 
Sbjct: 137 EFENLIKLCKEVFGEQNYIGSIVVKSNPRGSMSTAELASLHEYLVLFAK 185


>gi|320181982|gb|EFW56887.1| putative RNA methylase family UPF0020 [Shigella boydii ATCC 9905]
          Length = 702

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|170079575|ref|YP_001736208.1| DNA methylase containing a Zn-ribbon module [Synechococcus sp. PCC
           7002]
 gi|169887244|gb|ACB00953.1| Predicted DNA methylase containing a Zn-ribbon module
           [Synechococcus sp. PCC 7002]
          Length = 1057

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 45/157 (28%), Gaps = 35/157 (22%)

Query: 35  LPAKSVDLIFADPPY-------------------------------NLQLNGQLYRPDHS 63
           LP +S+D +  DPPY                                L    +    + S
Sbjct: 614 LPDQSIDAVVTDPPYYSTIQYAELSDFFYVWQKRILSDIFPELYYSELTDKDREAVANPS 673

Query: 64  LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL---WVIGSYHNIFRIGTMLQN 120
              A+  S    +  + Y+A  +       RVLK NG +   +          +   L N
Sbjct: 674 RFRAMGISPKDLAD-QDYEAKMQMAFSEYYRVLKDNGVMTVQFNHKDSGAWDVLAQSLIN 732

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
             F I         NP    + ++   +   L+    
Sbjct: 733 AGFEITASWAVSTENPQNLHQAQKNSVSSTVLLVCRK 769


>gi|297242726|ref|ZP_06926664.1| hypothetical protein GVAMD_0738 [Gardnerella vaginalis AMD]
 gi|296888937|gb|EFH27671.1| hypothetical protein GVAMD_0738 [Gardnerella vaginalis AMD]
          Length = 406

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 22/56 (39%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           Q     +   L        I+LDPF GSGT+   + +      GIE+      +A 
Sbjct: 44  QFSPQFVEAELTKYADKNYIVLDPFAGSGTTLYESARKNLLAYGIELNPSAYYMAK 99



 Score = 42.7 bits (99), Expect = 0.085,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 52/175 (29%), Gaps = 40/175 (22%)

Query: 4   KNSLAINENQNSIFEWKDKII------------KGNSISVLEKLPAKSVDLIFADPPY-N 50
           KN +      N   E K+ I+             G++      L    VDL+   PPY N
Sbjct: 162 KNEVTFELVVNKWGELKNTILELPFSNRPICVSNGDARKT--SLKTDLVDLVLTSPPYIN 219

Query: 51  LQLNGQLYRPDHSLVDAV-------------TDSWDKFSSFEAYDAFTRAWLLACRRVLK 97
           +    Q YR     +                    ++F +   Y       L    R+ K
Sbjct: 220 VFNYHQNYRKSVEALGYNVLEIAKSEFGANRKHRGNRFLTVIQYCIDIALSLKEASRICK 279

Query: 98  PNGTL------------WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
               +            +   +   I+RIGT +    F I  + V++       +
Sbjct: 280 DKARMIYVVGRESTVLGYSFCNSELIYRIGTEILGFEFDIRQERVFKNRYGHMIY 334


>gi|331672477|ref|ZP_08373267.1| putative oxidoreductase [Escherichia coli TA280]
 gi|331070383|gb|EGI41748.1| putative oxidoreductase [Escherichia coli TA280]
          Length = 705

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|331646207|ref|ZP_08347310.1| putative oxidoreductase [Escherichia coli M605]
 gi|330910721|gb|EGH39231.1| 23S rRNA (guanine-N-2-) -methyltransferase rlmL [Escherichia coli
           AA86]
 gi|331044959|gb|EGI17086.1| putative oxidoreductase [Escherichia coli M605]
          Length = 702

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|124005321|ref|ZP_01690162.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
 gi|123989143|gb|EAY28721.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
          Length = 584

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 9/109 (8%)

Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK-----PEALLSRI 216
             Y ++  A  + NE       +     +     +  D  ++          P+ LL   
Sbjct: 453 MPYKWSLSAKISENEGHWNSWLYSAVFSAAKSIRQATDLVEIRNAPNMSGDLPKDLLKYF 512

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           + + +   D I+D   G GT   +A+K  R     E+ Q+    A KR+
Sbjct: 513 IEAFSTTHDPIIDLEAGDGTLLLLAEKNNRVCYAAEVNQE----ACKRL 557


>gi|283478884|emb|CAY74800.1| UPF0020/UPF0064 protein ycbY [Erwinia pyrifoliae DSM 12163]
          Length = 717

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 22/140 (15%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++++ + +S L     +  DLIF DPP         +     + ++  
Sbjct: 592 NMRLNGLSGRQHRLMQADCLSWLRD-ADEQFDLIFIDPP--------TFSNSKRMEESFD 642

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
              D               +   +R+L+ NGT+    +          LQ L   +    
Sbjct: 643 VQRDHL-----------ELMKDLKRLLRKNGTVMFSNNKRGFKMDFAGLQALG--LAASE 689

Query: 130 VWRKSNPMPNFRGRRFQNAH 149
           +  K+      R R   N  
Sbjct: 690 ITAKTQSQDFARNRHIHNCW 709


>gi|71898864|ref|ZP_00681032.1| conserved hypothetical protein [Xylella fastidiosa Ann-1]
 gi|71731450|gb|EAO33513.1| conserved hypothetical protein [Xylella fastidiosa Ann-1]
          Length = 51

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           P  GSGT+G  A + +  FIG+ +   Y D+A +R++ 
Sbjct: 3   PLAGSGTTGVAALRAKHQFIGMALSLVYSDVAKQRLSD 40


>gi|156740428|ref|YP_001430557.1| cytosine-specific DNA-methyltransferase [Roseiflexus castenholzii
           DSM 13941]
 gi|156231756|gb|ABU56539.1| site-specific DNA-methyltransferase (cytosine-specific)
           [Roseiflexus castenholzii DSM 13941]
          Length = 476

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT-KRIASVQ 269
           L+  +          ILDPF GSGT+   A  +     GIE+     +I T KRI   +
Sbjct: 72  LVEHLFHKYGITAGRILDPFAGSGTALFAASAMGIDADGIELLPIGHEIITAKRILDAE 130



 Score = 43.1 bits (100), Expect = 0.084,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
           +  G+ + VL +L   + D I   PPY  + +    
Sbjct: 272 LYDGSCLQVLPRLSDNAYDAIMTSPPYCNRYDYTRT 307


>gi|310767209|gb|ADP12159.1| UPF0020/UPF0064 protein ycbY [Erwinia sp. Ejp617]
          Length = 717

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 22/140 (15%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++++ + +S L     +  DLIF DPP         +     + ++  
Sbjct: 592 NMRLNGLSGRQHRLMQADCLSWLRD-ADEQFDLIFIDPP--------TFSNSKRMEESFD 642

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
              D               +   +R+L+ NGT+    +          LQ L   +    
Sbjct: 643 VQRDHL-----------ELMKDLKRLLRKNGTVMFSNNKRGFKMDFAGLQALG--LAASE 689

Query: 130 VWRKSNPMPNFRGRRFQNAH 149
           +  K+      R R   N  
Sbjct: 690 ITAKTQSQDFARNRHIHNCW 709


>gi|212711053|ref|ZP_03319181.1| hypothetical protein PROVALCAL_02122 [Providencia alcalifaciens DSM
           30120]
 gi|212686221|gb|EEB45749.1| hypothetical protein PROVALCAL_02122 [Providencia alcalifaciens DSM
           30120]
          Length = 306

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 49/144 (34%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    +L    
Sbjct: 107 WEREWMDNFHPMRFGQRLWICPSWRDVPDPTAVNVMLDPGLAFGTGTHPTT---SLCLEW 163

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG     A KL     IGI++    I  +     + +  G  E
Sbjct: 164 LDGLDLEGKTVIDFGCGSGILAIAALKLGAAHAIGIDIDPQAILASRD---NAERNGVSE 220

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L   + +P+     +V   ++
Sbjct: 221 RLSLYLPKDQPQDLQADVVVANIL 244


>gi|170717749|ref|YP_001784818.1| 23S rRNA m(2)G2445 methyltransferase [Haemophilus somnus 2336]
 gi|229560187|sp|B0UUM5|RLML_HAES2 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|168825878|gb|ACA31249.1| putative RNA methylase [Haemophilus somnus 2336]
          Length = 718

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 39/108 (36%), Gaps = 20/108 (18%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N I   + K+I+ + +  L K   +  DLIF DPP              S    + DSWD
Sbjct: 599 NDIEGKQHKLIQADCLQWLNKC-DRQFDLIFVDPP------------TFSNSKRMEDSWD 645

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
                          +   +R+L+ NGT+    +          LQ L
Sbjct: 646 VQRDHI-------KLMANLKRILRTNGTIVFSNNKRGFKMDIDGLQEL 686


>gi|307311665|ref|ZP_07591305.1| putative RNA methylase [Escherichia coli W]
 gi|306908220|gb|EFN38719.1| putative RNA methylase [Escherichia coli W]
 gi|315060233|gb|ADT74560.1| predicted methyltransferase [Escherichia coli W]
 gi|323379207|gb|ADX51475.1| rRNA (guanine-N(2)-)-methyltransferase [Escherichia coli KO11]
          Length = 702

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFEVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|237726742|ref|ZP_04557223.1| methyltransferase [Bacteroides sp. D4]
 gi|229435268|gb|EEO45345.1| methyltransferase [Bacteroides dorei 5_1_36/D4]
          Length = 667

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/167 (12%), Positives = 54/167 (32%), Gaps = 23/167 (13%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQLN---GQLYRPDHSLVDAVTDSWDKFSS 77
           I+G+++ VL+ L       V +I+ DPPYN   +      +       +  +  +D+  +
Sbjct: 102 IEGDNLDVLKVLRETYLGKVKMIYIDPPYNTGNDFVYNDDFAQSKGEFEETSGLFDEEGN 161

Query: 78  ----------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
                              +       L   R +L  +G +++    + +  +  +   +
Sbjct: 162 QTIDPMQRNTESNGRFHTDWLNMIYPRLKVSRDLLSDDGVIFISIDDNEMENLKKICNEI 221

Query: 122 -NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
                   ++  ++NP           + E  +  +       +  N
Sbjct: 222 FGEQNFIGVLSVENNPKGRKNSAFISVSAEYCVIYAREKSVSHFIEN 268



 Score = 43.4 bits (101), Expect = 0.052,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 31/106 (29%), Gaps = 20/106 (18%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGI- 251
           D + +    K    +  ++         ILD F GS T+     +L       R FI + 
Sbjct: 428 DSKDIFTVPKNPGFIKILVSLIDSKDFAILDFFSGSATTAHAVMQLNAEDGGNRKFIMVQ 487

Query: 252 ------EMKQDY-------IDIATKRIASVQPLGNIELTVLTGKRT 284
                 E  + Y        +I  +RI         E     G   
Sbjct: 488 LPELTDEKSEAYKAGYKNICEIGKERIRRAGKKIKEENKDKEGIEK 533


>gi|206603890|gb|EDZ40370.1| Putative DNA methylase N-4/N-6 [Leptospirillum sp. Group II '5-way
           CG']
          Length = 453

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 51/139 (36%), Gaps = 10/139 (7%)

Query: 24  IKGNSISVLEKLPAK---SVDLIFADPPYNLQ----LNGQLYRPDHSLVDAVTDSWDKFS 76
           ++G ++ +L  L  +   ++ +I+ DPPYN         +  R       A  D+  +  
Sbjct: 69  LEGENLHILRLLKKEYAGAIGVIYIDPPYNTGTTMRYFDRFSRRGGPSGLAGGDTGSR-R 127

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN-IFRIGTMLQNL-NFWILNDIVWRKS 134
               + +F    L+  R +L+ +G L+V     +    +  +L  +         V  + 
Sbjct: 128 DDSPWLSFLYPRLILARELLREDGALFVSIDDRSIHHHLRYLLDEIFGPDNHAGTVVWRK 187

Query: 135 NPMPNFRGRRFQNAHETLI 153
             +     R      E ++
Sbjct: 188 KVVRGRGHRHIIPQTEYVV 206



 Score = 42.7 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 49/149 (32%), Gaps = 25/149 (16%)

Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
           ++ + ETL+      +          +          S       S  +R+   DG +  
Sbjct: 276 WRWSKETLMARKSELEFVKNRMGKWVVYTRQRLYPDGSLRRKTPVSFYDRVSTSDGTREF 335

Query: 205 PT---------QKPEALLSRILVSSTKPGD-----IILDPFFGSGTSGAVAKKLR----- 245
            T          KP  L+  ++     P D     I+LD F G+  +     +L      
Sbjct: 336 RTLCQGALFDFPKPSRLIKDLIGWVPFPADSQEPLIVLDFFAGTCPTAQAVLELNQSDAG 395

Query: 246 -RSFIGI-----EMKQDYIDIATKRIASV 268
            R FI +     E + D   +  KRI SV
Sbjct: 396 YRKFIMVQDTPGEGQTDIAALGHKRIQSV 424


>gi|269962459|ref|ZP_06176808.1| ribosomal protein L11 methyltransferase [Vibrio harveyi 1DA3]
 gi|269832755|gb|EEZ86865.1| ribosomal protein L11 methyltransferase [Vibrio harveyi 1DA3]
          Length = 295

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 54/168 (32%), Gaps = 12/168 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  +K         S   +P       + +     G   HPT    AL    
Sbjct: 96  WEREWMENFHPMKFGERLWICPSWRDVPEPDAVNVMLDPGLAFGTGTHPTT---ALCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG     A KL     IGI++    +  +     + +  G  +
Sbjct: 153 LESLDLSGKTVIDFGCGSGILAIAAIKLGAGKVIGIDIDPQALQASRD---NAERNGVAD 209

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
              +   + +P      +V   ++     L      I   V  +G L 
Sbjct: 210 QLEVYLPQNQPEGLIADVVVANIL--AGPLRELAPIIKGLVKPNGDLA 255


>gi|113461163|ref|YP_719232.1| 23S rRNA m(2)G2445 methyltransferase [Haemophilus somnus 129PT]
 gi|123327369|sp|Q0I4C6|RLML_HAES1 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|112823206|gb|ABI25295.1| 23S rRNA m(2)G-2445 methyltransferase [Haemophilus somnus 129PT]
          Length = 718

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 39/108 (36%), Gaps = 20/108 (18%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N I   + K+I+ + +  L K   +  DLIF DPP              S    + DSWD
Sbjct: 599 NDIEGKQHKLIQADCLQWLNKC-DRQFDLIFVDPP------------TFSNSKRMEDSWD 645

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
                          +   +R+L+ NGT+    +          LQ L
Sbjct: 646 VQRDHI-------KLMANLKRILRTNGTIVFSNNKRGFKMDIDGLQEL 686


>gi|300819191|ref|ZP_07099392.1| THUMP domain protein [Escherichia coli MS 107-1]
 gi|300528210|gb|EFK49272.1| THUMP domain protein [Escherichia coli MS 107-1]
          Length = 702

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 20/104 (19%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
                 A +   +R+L+  GT+    +          L  L   
Sbjct: 637 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLGLK 674


>gi|227548167|ref|ZP_03978216.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079728|gb|EEI17691.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Corynebacterium lipophiloflavum DSM 44291]
          Length = 386

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 19/142 (13%)

Query: 200 GEKLHPT-QKPEALLSRILVSSTKPGD--IILDPFFGSGTSGAVAKKLR------RSFIG 250
           G   H T  KP  L+  ++ S T  GD  +++D F GS T+     +L       R  I 
Sbjct: 137 GLSRHFTYPKPVELVKTLIRSVTPKGDRPLVMDFFSGSATTADAVMQLNSEDDGDRRCIS 196

Query: 251 IEMKQDYIDI-ATKR--IASVQPLGNIELTVLTG---KRTEPRVAFNLLVERGLIQPGQI 304
           +++  + +D     R   A+V  +G   +          ++  V +   + R L +P   
Sbjct: 197 VQI-PETVDADFEDRHVFATVDAVGRERIKRAADNIRNDSQFDVDYGFKLFR-LEKPSAK 254

Query: 305 LTNAQGNISATVCADGTLISGT 326
             +   +       DG L++G 
Sbjct: 255 TLDQLQSF--DPNEDGVLLAGD 274


>gi|167908661|ref|ZP_02495866.1| DNA methylase [Burkholderia pseudomallei NCTC 13177]
          Length = 50

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 23/45 (51%)

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           F GSGT  A A++    ++G E  Q Y  I++ R+ +      ++
Sbjct: 2   FAGSGTFLAAAREAGLHWVGSESNQAYHAISSARLDATTDDSGVQ 46


>gi|218438804|ref|YP_002377133.1| hypothetical protein PCC7424_1833 [Cyanothece sp. PCC 7424]
 gi|218171532|gb|ACK70265.1| conserved hypothetical protein [Cyanothece sp. PCC 7424]
          Length = 444

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 204 HPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +P       +   L +++      ILDPF G+GT+  VAKK+  + +GIE   
Sbjct: 42  YPAGYSYRFVEFFLELNNFNEKSYILDPFVGTGTTNIVAKKMGINSVGIEAHP 94



 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 17/40 (42%)

Query: 37  AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           ++S+DL+   PPY    +            A+ +SW   +
Sbjct: 252 SESIDLVITSPPYLNNYDYADRTRLEMYFFALANSWGDIT 291


>gi|126466128|ref|YP_001041237.1| RNA methylase [Staphylothermus marinus F1]
 gi|126014951|gb|ABN70329.1| putative RNA methylase [Staphylothermus marinus F1]
          Length = 337

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 209 PEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           P  L   ++ ++  K G+++LDPF G+G+    A  ++   IGIE+  + +  A + +
Sbjct: 171 PIRLSRLLINLARVKEGEVLLDPFAGTGSILIEALMMKIRPIGIEIDWELVRGARENL 228


>gi|327461993|gb|EGF08322.1| hypothetical protein HMPREF9394_0656 [Streptococcus sanguinis
           SK1057]
 gi|327490059|gb|EGF21847.1| hypothetical protein HMPREF9395_0586 [Streptococcus sanguinis
           SK1058]
          Length = 440

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 38/122 (31%), Gaps = 16/122 (13%)

Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
            +E     +   +   Y   Y  +   N++  +      P   G  +             
Sbjct: 5   KYELNKVRAIMYRYVNYVKEYGRIMQFNKNKDICIHRWYPFVEGYSK------------- 51

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
                +  I+   T+  +  L+PF GSGT+         S I  E+      ++  ++  
Sbjct: 52  ---EFIEAIVNEQTQKVESCLEPFSGSGTTALELSIKGISCISFEVNPFMFTLSKAKLKV 108

Query: 268 VQ 269
            Q
Sbjct: 109 SQ 110



 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 17  FEWKDKIIKGNSISVL-EKLPAKSVDLIFADPPYNLQLNG-QLYRPDHSLVDAVTDSWD 73
           F   + +  G++  ++ E +   SVDLI   PPY    +    Y  +   +D +T+  D
Sbjct: 243 FSNHNLLYLGDTRKLIFENVDDNSVDLIITSPPYLNSRDYTDSYMLELKALDFLTNYND 301


>gi|330445996|ref|ZP_08309648.1| 23S rRNA m2G2445 methyltransferase [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328490187|dbj|GAA04145.1| 23S rRNA m2G2445 methyltransferase [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 712

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 22/130 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + + I+ + +  L+++   + DLIF DPP         +     +  +     D     E
Sbjct: 598 QHEFIQADCLQWLQEVDD-TFDLIFIDPP--------TFSNSKRMKQSFDIQRDHIMLME 648

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                        +R+L+P G +    +  +       L  L     N  +  K+ PM  
Sbjct: 649 -----------NLKRMLRPEGQIVFSNNKRHFKMDLDKLNELGLHAKN--ISDKTLPMDF 695

Query: 140 FRGRRFQNAH 149
            + ++  N  
Sbjct: 696 AKNKQIHNCW 705


>gi|209696241|ref|YP_002264171.1| ribosomal protein L11 methyltransferase [Aliivibrio salmonicida
           LFI1238]
 gi|226706548|sp|B6ENA3|PRMA_ALISL RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|208010194|emb|CAQ80521.1| ribosomal protein L11 methyltransferase [Aliivibrio salmonicida
           LFI1238]
          Length = 294

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 53/168 (31%), Gaps = 12/168 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  +K         S   IP       + +     G   H T    AL    
Sbjct: 96  WEREWMDNFHPMKFGERLWICPSWREIPEPDAINVMLDPGLAFGTGTHATT---ALCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG     A KL     +GI++    I  +     +    G  E
Sbjct: 153 LESIDLTGKTVIDFGCGSGILAIAAIKLGAAKVVGIDIDPQAITASKD---NATRNGVAE 209

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
              L   + +P      +V   ++     L      I+A V   G L 
Sbjct: 210 QLTLFLPQDQPENLVADVVVANILAA--PLRELSSIITAHVKPGGALA 255


>gi|332529716|ref|ZP_08405670.1| hypothetical protein HGR_07346 [Hylemonella gracilis ATCC 19624]
 gi|332040737|gb|EGI77109.1| hypothetical protein HGR_07346 [Hylemonella gracilis ATCC 19624]
          Length = 446

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 21/45 (46%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            D ++DPF GSGT+    + L      IE+     D+   +  ++
Sbjct: 79  PDHVIDPFGGSGTTAITCQLLGIPATTIEVNPFLADVIRAKTTNI 123


>gi|258620656|ref|ZP_05715693.1| ribosomal protein L11 methyltransferase [Vibrio mimicus VM573]
 gi|258587171|gb|EEW11883.1| ribosomal protein L11 methyltransferase [Vibrio mimicus VM573]
          Length = 295

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 55/163 (33%), Gaps = 21/163 (12%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P       + +     G   HPT    AL    
Sbjct: 96  WEREWMDNFHPMQFGRRLWICPSWREVPDPQAVNVMLDPGLAFGTGTHPTT---ALCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK---R-------- 264
           L +    G  ++D   GSG     A KL     IGI++    +  +     R        
Sbjct: 153 LDNLDLSGKTVIDFGCGSGILAIAAIKLGAAKVIGIDIDPQALLASKDNAARNGVEDQIE 212

Query: 265 --IASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL 305
             +   QP   +   V+      P    + ++ +GL++PG  L
Sbjct: 213 VYLPKDQPEDLVADVVVANILAGPLRELSPII-KGLLKPGGQL 254


>gi|149922447|ref|ZP_01910880.1| putative RNA methylase [Plesiocystis pacifica SIR-1]
 gi|149816727|gb|EDM76218.1| putative RNA methylase [Plesiocystis pacifica SIR-1]
          Length = 465

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 15/99 (15%)

Query: 199 DGEKLHPTQKPEALLSRILVSST-KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
            G   +P +   AL   +L      PG  +LDPF G GT    A       +G ++    
Sbjct: 89  HGFHTYPARMHPALARVVLREFDLGPGSEVLDPFCGGGTVAVEAMVAGWRCLGSDLDPLA 148

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
           +     R++ V+         +  +R   R  F  ++E 
Sbjct: 149 L-----RLSRVK---------VERRREPQRARFTEVLEA 173


>gi|302530706|ref|ZP_07283048.1| predicted protein [Streptomyces sp. AA4]
 gi|302439601|gb|EFL11417.1| predicted protein [Streptomyces sp. AA4]
          Length = 281

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 45/190 (23%), Gaps = 60/190 (31%)

Query: 84  FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
           +   WL    RV +P G   +   +  +     +LQ    W                   
Sbjct: 11  WCALWLAEALRVTRPGGCCLLFTDWRQLPSATDVLQ-AGAW------------------- 50

Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
                    +W    P       N   +     +      W      G           L
Sbjct: 51  ---------VWHGVVPWLN---LNARPMAGRFANAAEYVVWGSAGGEGDRPRSRNCAGSL 98

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           H                            GSGT+G  A    R F+G E+   +  IA  
Sbjct: 99  H----------------------------GSGTTGVAAVLEHRRFVGAELLDHFATIAEP 130

Query: 264 RIASVQPLGN 273
            + + Q   N
Sbjct: 131 GMGAGQEASN 140


>gi|260779560|ref|ZP_05888450.1| ribosomal protein L11 methyltransferase [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260604369|gb|EEX30673.1| ribosomal protein L11 methyltransferase [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 295

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 56/168 (33%), Gaps = 12/168 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  +K         S   +P       + +     G   HPT    AL    
Sbjct: 96  WEREWMDNFHPMKFGERLWICPSWRDVPEPDAVNVMLDPGLAFGTGTHPTT---ALCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L         ++D   GSG     A KL     IGI++    + IA+K   + +  G  +
Sbjct: 153 LEGLDLSSKTVIDFGCGSGILAIAAIKLGAEKVIGIDIDPQAL-IASK--DNAERNGVAD 209

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
              +   + +P      +V   ++     L      I + V  +G L 
Sbjct: 210 KLEVFLPQDQPEGLIADVVVANIL--AGPLRELSPIIKSLVKPNGKLA 255


>gi|297617451|ref|YP_003702610.1| DNA methylase N-4/N-6 domain protein [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297145288|gb|ADI02045.1| DNA methylase N-4/N-6 domain protein [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 879

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 3/95 (3%)

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
            P+P  + +   +      + D   R  +   +  G       +    H T+ P   + R
Sbjct: 63  CPNPFIEDFIKEHGKPYDPDNDDYRRQPFAADVSEGKNDPIY-NAHSYH-TKVPHRAIMR 120

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFI 249
            ++  T+PGDI+ D F G+G +G  A     R  +
Sbjct: 121 YILHYTEPGDIVFDGFCGTGMTGVAASLCGDRKAV 155



 Score = 40.7 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 33/101 (32%), Gaps = 13/101 (12%)

Query: 34  KLPAKSVDLIFADPPY---------NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
            +P   +D IF DPP+         N      L    ++  +AV +   +      Y   
Sbjct: 484 SIPKNYIDYIFTDPPFGGNLMYSELNFLWEAWLRVFTNNKPEAVENK-AQGKGPREYQEL 542

Query: 85  TRAWLLACRRVLKPNGTL-WVIGSYHNIFRIGTMLQNLNFW 124
                    RVLKP   +  V  +  N  RI   +Q     
Sbjct: 543 MEKCFAEYYRVLKPGRWMTVVFHNSQN--RIWNAIQEAIMR 581


>gi|3789861|gb|AAC67523.1| PspGI methylase [Pyrococcus sp. GI-H]
          Length = 433

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 26/64 (40%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
            G   +P      +  + +    K   +ILDPF GSGT    AK    +  G ++    I
Sbjct: 39  HGMHSYPAMMIPQVARKSIKLWGKNAKVILDPFCGSGTVLVEAKIKNINSYGFDINPLAI 98

Query: 259 DIAT 262
            ++ 
Sbjct: 99  LLSK 102


>gi|90413380|ref|ZP_01221373.1| ribosomal protein L11 methyltransferase [Photobacterium profundum
           3TCK]
 gi|90325622|gb|EAS42091.1| ribosomal protein L11 methyltransferase [Photobacterium profundum
           3TCK]
          Length = 294

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 53/168 (31%), Gaps = 12/168 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S    P       L +     G   HPT    +L    
Sbjct: 96  WEREWMVNFHPMRFGRRLWICPSWREAPEPDAVNVLLDPGLAFGTGTHPTT---SLCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  I+D   GSG     A KL  +  IGI++    I  +     + +  G  +
Sbjct: 153 LDGQDLTGQTIIDFGCGSGILAIAALKLGAKKVIGIDIDPQAIQASRD---NAERNGVSD 209

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
              L   + +P      +V   ++     L      I + V   G L 
Sbjct: 210 KLELFLPKDQPTDVQADVVVANIL--AGPLRELSPVIKSLVKPGGKLA 255


>gi|85707564|ref|ZP_01038633.1| DNA methylase N-4/N-6 [Roseovarius sp. 217]
 gi|85667915|gb|EAQ22807.1| DNA methylase N-4/N-6 [Roseovarius sp. 217]
          Length = 338

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 44/140 (31%), Gaps = 15/140 (10%)

Query: 21  DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
            +++ G++     V   L      L+  DPPY +  +        +   A          
Sbjct: 210 HRLLCGDATSAADVARLLGDVRPHLMVTDPPYGVMYD----PDWRNRAGASETKRTGKVL 265

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
            +    +  AW       L P    +V     +   +   L    F I + I+W K   +
Sbjct: 266 NDDRADWRAAW------ALFPGDVAYVWHGALHATTVAESLVASGFDIRSQIIWAKDRHV 319

Query: 138 PNFRGRRFQNAHETLIWASP 157
            +     +Q  HE   +A  
Sbjct: 320 LSRGHYHWQ--HEPAWYAVR 337


>gi|149191332|ref|ZP_01869585.1| predicted methyltransferase [Vibrio shilonii AK1]
 gi|148834811|gb|EDL51795.1| predicted methyltransferase [Vibrio shilonii AK1]
          Length = 710

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 46/130 (35%), Gaps = 22/130 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + + I+ + +  LEK    S DLIF DPP         +     +  +     D  +   
Sbjct: 597 QHQYIQADCLQWLEK-ANGSYDLIFIDPP--------TFSNSKRMEQSFDVQRDHVT--- 644

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                    +   +R+L+  GT+    +  +       L+ L   +  + +  K+ P+  
Sbjct: 645 --------LMTNLKRLLREEGTIVFSNNKRHFKMDLKALEELG--LKAENISDKTLPLDF 694

Query: 140 FRGRRFQNAH 149
            R +   N  
Sbjct: 695 ARNKHIHNCW 704


>gi|20385053|gb|AAM21167.1|AF254788_2 BssSI DNA modification methyltransferase [Geobacillus
           stearothermophilus]
          Length = 1127

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 13/115 (11%)

Query: 197 NKDGEKLHPTQKP-EALLSRILVSSTKPGDI-------ILDPFFGSGTSGAVAKKLRRSF 248
           NK+G  +H   K  +   + ++        I       + DPF GSGT+    K L    
Sbjct: 723 NKEGIPIHNWYKYTQGFSADLIEYLLDEMGIKRNKEIKVFDPFVGSGTTLLSCKYLGIHS 782

Query: 249 IGIEMKQ-----DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGL 298
            G+++         I I   ++  ++ L N          ++P + FN  +++  
Sbjct: 783 FGVDISPLMTWITNIKIQNWKVNELEDLLNDLSKAQITPISDPTLLFNDYLKKAY 837


>gi|312884762|ref|ZP_07744463.1| ribosomal protein L11 methyltransferase [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367675|gb|EFP95226.1| ribosomal protein L11 methyltransferase [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 295

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 55/168 (32%), Gaps = 12/168 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  +K         S   IP       + +     G   HPT    AL    
Sbjct: 96  WEREWMDNFHPMKFGERLWICPSWRDIPEPDAVNVMLDPGLAFGTGTHPTT---ALCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG     A KL  +  IGI++    +  +     + Q  G  +
Sbjct: 153 LEGLDLSGKTVIDFGCGSGILAIAAIKLGAKQVIGIDIDPQALLASQD---NAQRNGVAD 209

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
              +   + +P      +V   ++     L      I + V  +G L 
Sbjct: 210 KLEVYLPKDQPENLLADVVVANIL--AGPLRELSPIIKSLVKPEGHLA 255


>gi|269925563|ref|YP_003322186.1| Spermine synthase [Thermobaculum terrenum ATCC BAA-798]
 gi|269789223|gb|ACZ41364.1| Spermine synthase [Thermobaculum terrenum ATCC BAA-798]
          Length = 293

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 8   AINENQNSIFEW-KDKIIKGNSISVLEKLPAKSVDLIFADPP--------YNLQLNGQLY 58
            +N     +FE  K K+I G+S  V+ + P +  D +  DPP        Y+L    QLY
Sbjct: 181 KLNPWSRELFENPKIKVIVGDSFEVIREFPDQYFDRVIHDPPIVSLAGDLYSLDFYKQLY 240

Query: 59  R 59
           R
Sbjct: 241 R 241



 Score = 41.5 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 47/136 (34%), Gaps = 11/136 (8%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT-----K 263
           P    +  + +       +LD   G G +  +A K     I +E+  + ++IA      +
Sbjct: 128 PLKDTAEKIKAIAPVIGKVLDTAMGLGYTAIMASKTADEVITVEIDPEVVEIAKLNPWSR 187

Query: 264 RIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLI--QPGQILT-NAQGNISATVCADG 320
            +     +  I        R  P   F+ ++    I    G + + +    +   +   G
Sbjct: 188 ELFENPKIKVIVGDSFEVIREFPDQYFDRVIHDPPIVSLAGDLYSLDFYKQLYRVIRPRG 247

Query: 321 TLISGTELG-SIHRVG 335
            L     +G   H++G
Sbjct: 248 RLF--HYIGNPEHKMG 261


>gi|217969387|ref|YP_002354621.1| DNA methylase N-4/N-6 domain protein [Thauera sp. MZ1T]
 gi|217506714|gb|ACK53725.1| DNA methylase N-4/N-6 domain protein [Thauera sp. MZ1T]
          Length = 1039

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 61/193 (31%), Gaps = 24/193 (12%)

Query: 23  IIKGNSISVLEKLPA----KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +I G++   L  L       S+D  + DPPYN   +   Y+           SW    S 
Sbjct: 469 VINGDNFQALN-LAKYRYRASIDFTYIDPPYNTVHSKIAYKNQFEH-----SSWLALISN 522

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
                FTR             G       Y+N F           +   D+     N  P
Sbjct: 523 T--LPFTRDLFGEIYSF----GFAIDDYEYNNAFHCL-----RGHFTECDVSTIVINHHP 571

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM---RSDWLIPICSGSERL 195
              G R    HE  I ASP    +   F  +      + ++     +++  P   G  R 
Sbjct: 572 QGSGGRLSRTHEYYIVASPKDAPQYLGFPKEDETEDRQFMRSGTADNNYRAPRAGGVGRW 631

Query: 196 RNKDGEKLHPTQK 208
           R+     + P+ K
Sbjct: 632 RSFYALLVDPSTK 644



 Score = 43.1 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 6/58 (10%)

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYIDIATKRIASV 268
           + S  K    +LD F GSGT+      L       R ++ +E  + +  +   RI  V
Sbjct: 763 MQSFGKTNFTVLDYFAGSGTTAHATISLNRQDNASRKYVLVEQGEYFETVLKPRIQKV 820


>gi|300690399|ref|YP_003751394.1| ribosomal protein L11 methyltransferase [Ralstonia solanacearum
           PSI07]
 gi|299077459|emb|CBJ50084.1| Ribosomal protein L11 methyltransferase [Ralstonia solanacearum
           PSI07]
          Length = 298

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 12/130 (9%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L    L    +PG+  LD   GSG    VAKKL     +G+++  + +
Sbjct: 145 GTGSHPTTR---LCMEWLEQHVQPGERTLDYGCGSGILAIVAKKLGTGETVGVDIDPNAV 201

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + +  R  + +   N      +     P   F+L+V   L  P   L      + A V  
Sbjct: 202 EAS--RYNAER---NRVEASFSLPDDAPEGPFDLVVANILSNP---LKLMAAMLCARVRP 253

Query: 319 DGTLISGTEL 328
            G L+    L
Sbjct: 254 GGRLVLSGVL 263


>gi|317049792|ref|YP_004117440.1| 50S ribosomal protein L11 methyltransferase [Pantoea sp. At-9b]
 gi|316951409|gb|ADU70884.1| ribosomal protein L11 methyltransferase [Pantoea sp. At-9b]
          Length = 293

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 36/108 (33%), Gaps = 7/108 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    AL    
Sbjct: 95  WEREWMDNFHPMRFGERLWICPSWREVPDPNAVNVMLDPGLAFGTGTHPTT---ALCLSW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           L      G  ++D   GSG     A KL     IGI++    I  +  
Sbjct: 152 LDGLDLQGKTVIDFGCGSGILAIAALKLGAAQAIGIDIDPQAIQASRD 199


>gi|67922819|ref|ZP_00516318.1| Conserved hypothetical protein 95 [Crocosphaera watsonii WH 8501]
 gi|67855312|gb|EAM50572.1| Conserved hypothetical protein 95 [Crocosphaera watsonii WH 8501]
          Length = 194

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
           ++IKG+ + VL+ L  +  DLI+ DPPY   L
Sbjct: 91  RLIKGDILKVLKNLEGQQFDLIYFDPPYQSGL 122


>gi|307137579|ref|ZP_07496935.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli H736]
          Length = 407

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 296 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 341

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 342 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 393

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 394 RNRQIHNCW 402


>gi|269793097|ref|YP_003318001.1| DNA methylase N-4/N-6 domain-containing protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100732|gb|ACZ19719.1| DNA methylase N-4/N-6 domain protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 1068

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 23/40 (57%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           T+ P   + R ++  T+PGD++ D F G+G +G  A+   
Sbjct: 176 TKVPHKAIMRYILHYTEPGDVVFDGFCGTGMTGVAAQLCG 215



 Score = 41.1 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 33/98 (33%), Gaps = 13/98 (13%)

Query: 38  KSVDLIFADPPY---------NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
           +SVD IF DPP+         N      L    ++  +A+T+   +      Y       
Sbjct: 606 ESVDYIFTDPPFGGNLMYSELNFLWEAWLKVFTNNKPEAITNET-QGKGLPEYQRLMTEC 664

Query: 89  LLACRRVLKPNGTL-WVIGSYHN--IFRIGTMLQNLNF 123
                RVLKP   +     +  N     I   LQ   F
Sbjct: 665 FKEYYRVLKPGRWMTVEFHNSKNSVWNAIQEALQTAGF 702


>gi|307719841|ref|YP_003875373.1| hypothetical protein STHERM_c21710 [Spirochaeta thermophila DSM
           6192]
 gi|306533566|gb|ADN03100.1| hypothetical protein STHERM_c21710 [Spirochaeta thermophila DSM
           6192]
          Length = 353

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 25/102 (24%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           FE K +++ G++  +    P +S   I  DPP+ ++L  +L                   
Sbjct: 247 FERKVRLVLGDARRLSSYFPPESFQYIVTDPPFGVKLGRRL------------------- 287

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
               ++    A+L     VLKP GT+  +      +RI + L
Sbjct: 288 ---DFEDLFSAFLEEASLVLKPGGTMVFLT---MHWRIISRL 323


>gi|321311651|ref|YP_004203938.1| putative methyltransferase [Bacillus subtilis BSn5]
 gi|320017925|gb|ADV92911.1| putative methyltransferase [Bacillus subtilis BSn5]
          Length = 257

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 19/28 (67%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADP 47
           + ++  G+ +  +++LP  SVD+++ DP
Sbjct: 155 RIQVKNGDCLEYIKQLPDNSVDVVYFDP 182


>gi|291484603|dbj|BAI85678.1| hypothetical protein BSNT_03256 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 257

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 19/28 (67%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADP 47
           + ++  G+ +  +++LP  SVD+++ DP
Sbjct: 155 RIQVKNGDCLEYIKQLPDNSVDVVYFDP 182


>gi|15341563|gb|AAK95340.1| truncated type III restriction-modification system
           methyltransferase [Moraxella catarrhalis]
          Length = 331

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 44/107 (41%), Gaps = 17/107 (15%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           ++ +IKGN++  L  L    +  + LI+ DPPY                    D+++  S
Sbjct: 67  QNLLIKGNNLLALHSLKERLSGKIKLIYIDPPYYFNKKK------------PNDTFNYNS 114

Query: 77  SFE--AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
           +F+  ++  F +  L   +  L   G +++      +  +  ++  +
Sbjct: 115 NFKLSSWLIFMKNRLEVAKEFLSDTGVIFISIDDDGLAYLKVLMDEI 161


>gi|89094593|ref|ZP_01167531.1| ribosomal protein L11 methyltransferase [Oceanospirillum sp. MED92]
 gi|89081192|gb|EAR60426.1| ribosomal protein L11 methyltransferase [Oceanospirillum sp. MED92]
          Length = 298

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 51/167 (30%), Gaps = 12/167 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  NY  ++         S    P       + +     G   HPT    AL    
Sbjct: 99  WEREWMENYHPMQFGKRLWVCPSWREAPEPEAVNLMLDPGLAFGTGTHPTT---ALCLEW 155

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L +       I+D   GSG  G  A  L  +  IGI++    +      +   +   +  
Sbjct: 156 LDAQKLDDHYIIDYGCGSGILGIAALLLGAKQAIGIDIDPQALQATKDNLQRNKLSSDSL 215

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
              +     +P    + LV    I  G  L      I + V   G L
Sbjct: 216 EVFMP--EDQPSEQADTLVAN--ILAGP-LVQLAPTIQSLVKPGGKL 257


>gi|332159191|ref|YP_004424470.1| hypothetical protein PNA2_1552 [Pyrococcus sp. NA2]
 gi|331034654|gb|AEC52466.1| hypothetical protein PNA2_1552 [Pyrococcus sp. NA2]
          Length = 279

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 27/83 (32%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G+S  ++ K   +  D I  DPP    L G+LY                       
Sbjct: 178 KIIHGDSYELVRKFEDEIFDAIIHDPP-RFSLAGELY----------------------- 213

Query: 82  DAFTRAWLLACRRVLKPNGTLWV 104
              +  +     R+LKP G L+ 
Sbjct: 214 ---SEEFYSELFRILKPGGRLFH 233


>gi|320202346|gb|EFW76917.1| putative RNA methylase family UPF0020 [Escherichia coli EC4100B]
          Length = 370

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 259 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 304

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 305 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 356

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 357 RNRQIHNCW 365


>gi|119490747|ref|ZP_01623079.1| hypothetical protein L8106_03874 [Lyngbya sp. PCC 8106]
 gi|119453731|gb|EAW34889.1| hypothetical protein L8106_03874 [Lyngbya sp. PCC 8106]
          Length = 114

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 32/114 (28%), Gaps = 27/114 (23%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRP------------------------DHSLVDA 67
           ++ LP   +     DPPYN +  G  +                             L   
Sbjct: 1   MKSLPTNYISASITDPPYNYEFIGHKWNNPEIQRRLDKINTKESKTLVKNIPYGSGLAGG 60

Query: 68  VTDSW---DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
           V +         +   Y+ +   W     R+ KP  T+ V  S   +  I   L
Sbjct: 61  VRNKRWYERNRENILDYEKWCFEWGQELFRICKPGATVLVFNSTRTVAHIQVAL 114


>gi|147675659|ref|YP_001218565.1| ribosomal protein L11 methyltransferase [Vibrio cholerae O395]
 gi|262167984|ref|ZP_06035683.1| ribosomal protein L11 methyltransferase [Vibrio cholerae RC27]
 gi|172047477|sp|A5F3S3|PRMA_VIBC3 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|146317542|gb|ABQ22081.1| ribosomal protein L11 methyltransferase [Vibrio cholerae O395]
 gi|227012152|gb|ACP08362.1| ribosomal protein L11 methyltransferase [Vibrio cholerae O395]
 gi|262023517|gb|EEY42219.1| ribosomal protein L11 methyltransferase [Vibrio cholerae RC27]
          Length = 295

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 55/163 (33%), Gaps = 21/163 (12%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P       + +     G   HPT    AL    
Sbjct: 96  WEREWMDNFHPMQFGRRLWICPSWREVPDPQAVNVMLDPGLAFGTGTHPTT---ALCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK---R-------- 264
           L +    G  ++D   GSG     A KL     IGI++    +  +     R        
Sbjct: 153 LDNLDLTGKTVIDFGCGSGILAIAAIKLGAAKVIGIDIDPQALLASKDNAARNGVEDQIE 212

Query: 265 --IASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL 305
             +   QP G +   V+      P    +  + +GL++PG  L
Sbjct: 213 VYLPKDQPEGLVADVVVANILAGPLRELSPTI-KGLLKPGGQL 254


>gi|329848120|ref|ZP_08263148.1| adenine specific DNA methylase [Asticcacaulis biprosthecum C19]
 gi|328843183|gb|EGF92752.1| adenine specific DNA methylase [Asticcacaulis biprosthecum C19]
          Length = 169

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 43/129 (33%), Gaps = 12/129 (9%)

Query: 244 LRRSFIGIEMKQDYIDIATKRIASV---QPLGNIELTVLT--GKRTEPRVAFNLLVERGL 298
           + R +IGIEM          R+  V   +  G  E       G     R+   +  E G 
Sbjct: 1   MGRRWIGIEMGDHAATHCVPRLRKVIEGEQGGISESVGWQGGGGFEFYRLGEAVFDETGA 60

Query: 299 IQPGQILTNAQGNIS-------ATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWY 351
           I  G        ++         T   +G  +   E   +  +   + G ++ +G N   
Sbjct: 61  IHSGITFAPLAAHVWFAETGKPMTGVHEGPFLGSHEGKGLALLYNGILGDKSVSGGNVLT 120

Query: 352 FEKLGELHS 360
            + LG + +
Sbjct: 121 RKTLGIIRA 129


>gi|260854240|ref|YP_003228131.1| putative methyltransferase [Escherichia coli O26:H11 str. 11368]
 gi|260867120|ref|YP_003233522.1| putative methyltransferase [Escherichia coli O111:H- str. 11128]
 gi|257752889|dbj|BAI24391.1| predicted methyltransferase [Escherichia coli O26:H11 str. 11368]
 gi|257763476|dbj|BAI34971.1| predicted methyltransferase [Escherichia coli O111:H- str. 11128]
 gi|323157158|gb|EFZ43281.1| hypothetical protein ECEPECA14_0949 [Escherichia coli EPECa14]
 gi|323175424|gb|EFZ61019.1| hypothetical protein ECOK1180_5708 [Escherichia coli 1180]
          Length = 702

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 20/91 (21%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
                 A +   +R+L+  GT+    +    
Sbjct: 637 ------ALMKDLKRLLRAGGTIMFSNNKRGF 661


>gi|147677050|ref|YP_001211265.1| hypothetical protein PTH_0715 [Pelotomaculum thermopropionicum SI]
 gi|146273147|dbj|BAF58896.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 885

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 3/93 (3%)

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
            P+P  + +   +      + D   R  +   +  G       +    H T+ P   + R
Sbjct: 63  CPNPFIRDFIKEHGKPYDPDNDAYRRQPFAADVSEGKNDPIY-NAHSYH-TKVPHRAIMR 120

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RS 247
            ++  T+PGDI+ D F G+G +G  A     R 
Sbjct: 121 YILHYTEPGDIVFDGFCGTGMTGVAASLCGDRR 153



 Score = 39.2 bits (90), Expect = 1.00,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 36/100 (36%), Gaps = 13/100 (13%)

Query: 32  LEKLPAKSVDLIFADPPY---------NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           L ++ + S D IF DPP+         N      L    ++  +AV +   +      Y 
Sbjct: 488 LHQIKSSSTDYIFTDPPFGGNIMYSEMNFLWEAWLRVFTNNKPEAVENK-AQGKGPREYQ 546

Query: 83  AFTRAWLLACRRVLKPNGTL-WVIGSYHNIFRIGTMLQNL 121
                    C R+LKP   +  V  +  N  RI   +Q  
Sbjct: 547 ELMEKCFAECYRILKPGRWMTVVFHNSQN--RIWNAIQEA 584


>gi|332304484|ref|YP_004432335.1| ribosomal protein L11 methyltransferase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332171813|gb|AEE21067.1| ribosomal protein L11 methyltransferase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 305

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 7/102 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S    P  +    + +     G   HPT    AL  R 
Sbjct: 108 WEREWMDNFHPMRFGQRLWICPSWREAPDPTAVNVMLDPGLAFGTGTHPTT---ALCLRW 164

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDY 257
           L +      +++D   GSG  G  A KL     +GI++    
Sbjct: 165 LDALELKDKLVVDFGCGSGILGIAAIKLGAERVVGIDIDPQA 206


>gi|134300090|ref|YP_001113586.1| type III restriction-modification system methylation subunit
           [Desulfotomaculum reducens MI-1]
 gi|134052790|gb|ABO50761.1| type III restriction-modification system methylation subunit
           [Desulfotomaculum reducens MI-1]
          Length = 227

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 22/107 (20%)

Query: 24  IKGNSISVLEKLPA---KSVDLIFADPPYNLQL-----------------NGQLYRPDHS 63
           I+G+++  L+ L       V +I+ DPPYN                    N   Y  + +
Sbjct: 107 IEGDNLDALKLLQETYLGKVKMIYIDPPYNTGNDFIYEDDFAQDADEYLANSGQYDENGN 166

Query: 64  LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
            +   T+S  +F +   +       L   + +L  +G +++    + 
Sbjct: 167 RLVQNTESNGRFHT--DWLNMIYPRLKLAKDLLTEDGAIFISIDDNE 211


>gi|325564055|gb|ADZ31413.1| M.StuI [Streptomyces tubercidicus]
          Length = 681

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
           I+LDPF GSG +G  A KL    +  ++    +    +R  +VQP
Sbjct: 63  IVLDPFSGSGVTGVEALKLGAKAVCFDINP--VATLVQR-QAVQP 104



 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 14/82 (17%)

Query: 35  LPAKSVDLIFADPPY--NLQLN--GQLYRPDHSLVDAVTDSWD----------KFSSFEA 80
           +P  SVDL+  DPPY  N+        +      +       D          + +    
Sbjct: 455 IPDGSVDLVVTDPPYMDNVHYAELADFFHAWLQHMQPYIGYSDATTTRRVGEVQHADPAE 514

Query: 81  YDAFTRAWLLACRRVLKPNGTL 102
           +     A      RVLKP G L
Sbjct: 515 FGKAIEAVWTESARVLKPGGLL 536


>gi|294669884|ref|ZP_06734943.1| hypothetical protein NEIELOOT_01777 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308277|gb|EFE49520.1| hypothetical protein NEIELOOT_01777 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 383

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/174 (12%), Positives = 62/174 (35%), Gaps = 28/174 (16%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLY-------RPDHSLVDAVT 69
           ++  I+  ++  L+ L    + SV +I+ DPPYN   +  +Y       R +++     T
Sbjct: 126 QNVFIEAENLEALKILQKSYSGSVKMIYIDPPYNTGSDSFIYPDKFSESREEYARRVGDT 185

Query: 70  DS-------------W-----DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
           D              W     D       + +     L   + +L+ +G +++    +  
Sbjct: 186 DDAGYLKRDGVFQGAWRKNGKDSGHYHSNWLSMMLPRLHLAKTLLREDGVIFISIDDNEQ 245

Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
            ++  +   +         + +       + +  +  H+ ++  + + +   +T
Sbjct: 246 AQLKLLCDEVFGVENFVAQFSREAIKGGSQSKFVRETHDYILCYAKNIQYVEFT 299


>gi|254412907|ref|ZP_05026679.1| hypothetical protein MC7420_2067 [Microcoleus chthonoplastes PCC
           7420]
 gi|196180071|gb|EDX75063.1| hypothetical protein MC7420_2067 [Microcoleus chthonoplastes PCC
           7420]
          Length = 466

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
           KG+ + ++  LP  S   I   PPY  + +    
Sbjct: 264 KGSCLDLMPTLPDSSYHAIVTSPPYCNRYDYTRT 297



 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 28/54 (51%)

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           AL+  +L         ILDPF GSGT+  VA ++  +  GIE+     +I T R
Sbjct: 60  ALVDYLLQRYGITNSTILDPFAGSGTALFVASEIGINAQGIELLPIGQEIITIR 113


>gi|182681084|ref|YP_001829244.1| hypothetical protein XfasM23_0526 [Xylella fastidiosa M23]
 gi|182631194|gb|ACB91970.1| hypothetical protein XfasM23_0526 [Xylella fastidiosa M23]
 gi|307579532|gb|ADN63501.1| hypothetical protein XFLM_07965 [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 51

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           P  GSGT+G  A + +  FIG+ +   Y  +A +R++ 
Sbjct: 3   PLAGSGTTGVAALRAKHRFIGMALSLVYSHVAKQRLSD 40


>gi|295395114|ref|ZP_06805323.1| DNA (cytosine-5-)-methyltransferase [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294972062|gb|EFG47928.1| DNA (cytosine-5-)-methyltransferase [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 407

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 46/138 (33%), Gaps = 15/138 (10%)

Query: 23  IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +I+G+++  L+ L       V +++ DPPYN   N   YR                    
Sbjct: 52  VIEGDNLDALKHLQQTHKHRVSVVYIDPPYNTG-NALPYRDTFGAAGHAG---------- 100

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            + +     L+  R +++ +G ++V         +  +   +         +        
Sbjct: 101 -WMSMMLPRLIVARELMRLDGVIFVSIDDREHAFLTLVGHQVFGEENFLGSFVHQRARGG 159

Query: 140 FRGRRFQNAHETLIWASP 157
            + R +   H+ +   + 
Sbjct: 160 GQARTWIRGHDYIAVWAK 177



 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 8/57 (14%)

Query: 203 LHPTQKPEALLSRILVSSTK--PGDIILDPFFGSGTSGAVAKKLR------RSFIGI 251
           L    KP +L+  ++ S T   P  ++LD F GSGT+     +L       R FI +
Sbjct: 299 LFTYPKPVSLMRTLVRSRTFFDPEAVVLDFFAGSGTTAQAVMELNAEDGGRREFILV 355


>gi|218700533|ref|YP_002408162.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli IAI39]
 gi|218370519|emb|CAR18326.1| putative conserved AdoMet-dependent methyltransferase with RNA
           interaction domain [Escherichia coli IAI39]
          Length = 702

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                   +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------VLMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|126661447|ref|ZP_01732504.1| hypothetical protein CY0110_31960 [Cyanothece sp. CCY0110]
 gi|126617260|gb|EAZ88072.1| hypothetical protein CY0110_31960 [Cyanothece sp. CCY0110]
          Length = 547

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 59/212 (27%), Gaps = 47/212 (22%)

Query: 2   SQKNSLAINENQ--NSIFEWKDKI----------IKGNSISVLEKLPAKSVDLIFADPPY 49
           SQ N L I  N+  N   E ++K+          I   S   L  +P  ++D I  DPPY
Sbjct: 96  SQNNDLTITHNKQNNKDVEIENKLHNNYAPEIVNINLESADSLYHIPDNTLDAIITDPPY 155

Query: 50  -------------------------------NLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
                                           L    +    + S    + +S D   + 
Sbjct: 156 YGTIQYAELSDFFYVWQRRTLGDIFPDLFYQELTDKDREAVANPSRFRNMGESPD-ILAK 214

Query: 79  EAYDAFTRAWLLACRRVLKPNGTL---WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
             Y+A          RVL+  G L   +          +   L +  F I         N
Sbjct: 215 RDYEAKMALAWSEAYRVLRDEGVLTVQFNHKDSGAWDTLAKALIDAGFEITASWAVSTEN 274

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
           P    + ++   +   ++            + 
Sbjct: 275 PQNLHQAKKNSVSSTVILVCRKRDPKAQQAWW 306


>gi|91784566|ref|YP_559772.1| hypothetical protein Bxe_A1233 [Burkholderia xenovorans LB400]
 gi|91688520|gb|ABE31720.1| hypothetical protein Bxe_A1233 [Burkholderia xenovorans LB400]
          Length = 438

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG 55
           Q    + + K+++ ++ + L+ +P   VDL+   PPY    + 
Sbjct: 228 QKGQTKSRAKLLQSDART-LKGIPDARVDLVITSPPYANNYDY 269



 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%)

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
           ++LDPF GSGT    A K      G+E       +A  ++A        E  +   ++
Sbjct: 67  VVLDPFVGSGTVCVEADKAGIKSYGVESHPFVYRLARGKLAWASSPEAFEAAIAAVEK 124


>gi|110641137|ref|YP_668867.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli 536]
 gi|191172055|ref|ZP_03033599.1| putative RNA methylase family UPF0020 [Escherichia coli F11]
 gi|300983000|ref|ZP_07176404.1| THUMP domain protein [Escherichia coli MS 200-1]
 gi|122958441|sp|Q0TJB3|RLML_ECOL5 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|110342729|gb|ABG68966.1| hypothetical protein YcbY [Escherichia coli 536]
 gi|190907582|gb|EDV67177.1| putative RNA methylase family UPF0020 [Escherichia coli F11]
 gi|300307017|gb|EFJ61537.1| THUMP domain protein [Escherichia coli MS 200-1]
 gi|324009878|gb|EGB79097.1| THUMP domain protein [Escherichia coli MS 57-2]
 gi|324012930|gb|EGB82149.1| THUMP domain protein [Escherichia coli MS 60-1]
          Length = 702

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                   +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------VLMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|170683350|ref|YP_001744221.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli SMS-3-5]
 gi|238688762|sp|B1LJR4|RLML_ECOSM RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|170521068|gb|ACB19246.1| putative RNA methylase family UPF0020 [Escherichia coli SMS-3-5]
          Length = 702

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                   +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------VLMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|331641478|ref|ZP_08342613.1| putative oxidoreductase [Escherichia coli H736]
 gi|331038276|gb|EGI10496.1| putative oxidoreductase [Escherichia coli H736]
          Length = 370

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 259 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 304

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 305 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 356

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 357 RNRQIHNCW 365


>gi|308809742|ref|XP_003082180.1| unnamed protein product [Ostreococcus tauri]
 gi|116060648|emb|CAL57126.1| unnamed protein product [Ostreococcus tauri]
          Length = 486

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 49/142 (34%), Gaps = 13/142 (9%)

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED--VQMRSDW---L 185
            R  +   + R  R     ETL +   +  A  +           E     MR  W    
Sbjct: 32  PRGGSNDADGRAWRDDVDDETLAYVRKASTASSFEERAFGDDVIGEKLLRAMRVQWTHGF 91

Query: 186 IPICSGSERLRNKDGEKL---HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
               SG  R  +  GE L    P      L+ R ++S +     +LDPF G GT+   A 
Sbjct: 92  ASTPSGFPRCTHGFGEILAGMQPAA--CDLILRDVLSGSTS---VLDPFAGGGTTLVCAA 146

Query: 243 KLRRSFIGIEMKQDYIDIATKR 264
            L    +G ++      ++  R
Sbjct: 147 TLGMRAVGTDVSPLACFVSAHR 168


>gi|254173067|ref|ZP_04879741.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus sp. AM4]
 gi|214033223|gb|EEB74051.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus sp. AM4]
          Length = 418

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 20/117 (17%)

Query: 203 LHPTQKPE------ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           +HP    +       LL R + + T  G+ +LD + G GT G    K      GIE+   
Sbjct: 255 IHPNSFFQTNSYALELLLRAVENFTD-GERVLDLYSGVGTFGVYLAKRGFRVEGIEINPF 313

Query: 257 YIDIATK-----------RIASVQ--PLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
            +++A +           R+   +  P+G+ +  ++   R   + A  LLV+ G+ +
Sbjct: 314 AVEMANRNAKLNGVNAQFRVGRAEETPIGDYDTVIVDPPRKGLKEAGELLVKSGVER 370


>gi|57641980|ref|YP_184458.1| SAM-dependent methyltransferase [Thermococcus kodakarensis KOD1]
 gi|57160304|dbj|BAD86234.1| SAM-dependent methyltransferase, UPF0020 family [Thermococcus
           kodakarensis KOD1]
          Length = 290

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 27/85 (31%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K ++I+G++  V++K    S D+I  DPP    L G LY                     
Sbjct: 179 KIQVIQGDAFEVVKKFKQASFDVIIHDPP-RFSLAGHLY--------------------- 216

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWV 104
                +  +     R+LKP G L+ 
Sbjct: 217 -----SEEFYRELFRILKPGGRLFH 236



 Score = 37.7 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT-----KRIASVQPLGNIEL 276
           + G+ +LD   G G +   A K     I IE   + I+IA      + + +   +  I+ 
Sbjct: 126 REGETVLDTCMGLGYTAIEASKRGAYVITIEKDPNVIEIARINPWSRELFTGGKIQVIQG 185

Query: 277 TVLTGKRTEPRVAFNLLV 294
                 +   + +F++++
Sbjct: 186 DAFEVVKKFKQASFDVII 203


>gi|227544449|ref|ZP_03974498.1| adenine specific DNA methylase Mod [Lactobacillus reuteri CF48-3A]
 gi|227185576|gb|EEI65647.1| adenine specific DNA methylase Mod [Lactobacillus reuteri CF48-3A]
          Length = 490

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 58/160 (36%), Gaps = 23/160 (14%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + +IKGN++  L  +    A  + LI+ DPPYN   +   Y              D+F S
Sbjct: 181 NLVIKGNNLIALHSIAKKYAGKIKLIYLDPPYNTGSDSFKY-------------NDRF-S 226

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
              +  F ++ L   + ++  NG + +         +  +  ++      D        +
Sbjct: 227 HATWLTFMKSRLEIAKTLMSDNGVIAIQLDDSEGPYLKVLTDSI---FGRDNELFTQYVL 283

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
             +  +  ++  +   +     +   Y  N +A    N+D
Sbjct: 284 VRYANKTLKSDMD---YHKQIEQIHYYKKNSNAEVKPNKD 320


>gi|88858407|ref|ZP_01133049.1| methylation of 50S ribosomal subunit protein L11 (ribosomal protein
           L11 methyltransferase) [Pseudoalteromonas tunicata D2]
 gi|88820024|gb|EAR29837.1| methylation of 50S ribosomal subunit protein L11 (ribosomal protein
           L11 methyltransferase) [Pseudoalteromonas tunicata D2]
          Length = 292

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 55/152 (36%), Gaps = 10/152 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  +K         S   IP  +    L +     G   H T    AL    
Sbjct: 95  WEREWMDNFHPIKFGERLWICPSWREIPDPTAVNVLLDPGLAFGTGTHATT---ALCLEW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG  G  A KL     IGI++    ++ +   + + Q  G   
Sbjct: 152 LESLDLTGKTVVDFGCGSGILGIAAIKLGAARVIGIDIDPQALEAS---LDNAQRNGVAH 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTN 307
              +   + +P    +++V   L  P + L +
Sbjct: 209 QLEVYLPQDQPEFMADVMVANILAAPLRELHS 240


>gi|109896423|ref|YP_659678.1| ribosomal protein L11 methyltransferase [Pseudoalteromonas
           atlantica T6c]
 gi|123361445|sp|Q15ZR4|PRMA_PSEA6 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|109698704|gb|ABG38624.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [Pseudoalteromonas atlantica T6c]
          Length = 292

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 7/102 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  S    + +     G   HPT    AL  R 
Sbjct: 95  WEREWMDNFHPMRFGQRLWICPSWRDVPDPSAVNVMLDPGLAFGTGTHPTT---ALCLRW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDY 257
           L +      +++D   GSG  G  A KL  +  +GI++    
Sbjct: 152 LDALELSDKLVVDFGCGSGILGIAAIKLGAKRVVGIDIDPQA 193


>gi|306836194|ref|ZP_07469178.1| type III restriction-modification system methyltransferase
           [Corynebacterium accolens ATCC 49726]
 gi|304567915|gb|EFM43496.1| type III restriction-modification system methyltransferase
           [Corynebacterium accolens ATCC 49726]
          Length = 285

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPT----QKPEALLSRILVSSTKPGDIILDPFFGSGT 236
           RS   +P   GS    +KD E L+       K    +  +L    K  DI+LD F GSGT
Sbjct: 7   RSVEKLPTFFGSNHRGSKDLEALNLAGFDFPKSVDFIRWLLAFGLKDDDIVLDFFAGSGT 66

Query: 237 SGAVA 241
           +G  A
Sbjct: 67  TGQAA 71


>gi|300813394|ref|ZP_07093745.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300512537|gb|EFK39686.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 422

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 38/123 (30%), Gaps = 18/123 (14%)

Query: 164 YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKP 223
           Y   Y  +   N++ +       P   G  +                  +  I+    K 
Sbjct: 7   YYQEYGRIMQFNKNKKEPIHRWYPFVEGYSK----------------EFIKSIIDEVNKK 50

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE--LTVLTG 281
             + L+PF GSGT+    +         E+      IA  ++ +   L  +E     +  
Sbjct: 51  DLVCLEPFSGSGTTSLELQHNNIPCYSFEINPLMYIIAKVKLENDYDLNKVELWHDFVQT 110

Query: 282 KRT 284
           KR 
Sbjct: 111 KRA 113



 Score = 41.5 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 9   INENQNSIFEWKDKIIKGNSISVL-EKLPAKSVDLIFADPPY 49
           I   + +    ++ +   +S   + +++   S+DL+   PPY
Sbjct: 217 IQSIKKTAQNNQNILFNEDSRVGIEKEVENNSIDLVITSPPY 258


>gi|256004416|ref|ZP_05429396.1| conserved hypothetical protein [Clostridium thermocellum DSM 2360]
 gi|255991557|gb|EEU01659.1| conserved hypothetical protein [Clostridium thermocellum DSM 2360]
 gi|316941351|gb|ADU75385.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum DSM
           1313]
          Length = 851

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 2/90 (2%)

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
            P+P  + +   +        D   R  +   +  G              T+ P   + R
Sbjct: 38  CPNPFIEDFIKEHGKPYDEATDDYHREPFAADVSEGKNDPIYNAHSYH--TKVPHKAIMR 95

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
            ++  T+PGDI+ D F G+G +G  A+   
Sbjct: 96  YILHYTEPGDIVFDGFCGTGMTGVAAQMCG 125


>gi|229550589|ref|ZP_04439314.1| cytosine (N4) specific methyltransferase [Enterococcus faecalis
           ATCC 29200]
 gi|229304308|gb|EEN70304.1| cytosine (N4) specific methyltransferase [Enterococcus faecalis
           ATCC 29200]
          Length = 432

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 199 DGEKLHPTQKPEALLSRILVSS-TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
            G   +P +    +    + +  +    ++LDPF GSGT+   +        GI++    
Sbjct: 31  HGFHKYPGKFIPQIPEWAIKNYLSDREQVVLDPFVGSGTTLVESTVFGYDSFGIDIDPLS 90

Query: 258 IDIAT 262
             I+ 
Sbjct: 91  CLISK 95


>gi|293414228|ref|ZP_06656877.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
           B185]
 gi|291434286|gb|EFF07259.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
           B185]
          Length = 702

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQCDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|188534239|ref|YP_001908036.1| 23S rRNA m(2)G2445 methyltransferase [Erwinia tasmaniensis Et1/99]
 gi|229560154|sp|B2VDF6|RLML_ERWT9 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|188029281|emb|CAO97158.1| Conserved hypothetical protein YcbY [Erwinia tasmaniensis Et1/99]
          Length = 705

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 22/140 (15%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++++ + +S L     +  DLIF DPP          +      D   
Sbjct: 580 NMRLNGLSGRQHRLMQADCLSWLRD-ADEQFDLIFIDPP-----TFSNSKRMDESFDVQR 633

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
           D  D                   +R+L+ NGT+    +    F++          + N+I
Sbjct: 634 DHLDLMKDL--------------KRLLRKNGTVMFSNNKRG-FKMDFAGMEALGLVANEI 678

Query: 130 VWRKSNPMPNFRGRRFQNAH 149
             + +      R R+  N  
Sbjct: 679 TTK-TQSQDFARNRQIHNCW 697


>gi|237808179|ref|YP_002892619.1| 23S rRNA m(2)G2445 methyltransferase [Tolumonas auensis DSM 9187]
 gi|237500440|gb|ACQ93033.1| putative RNA methylase [Tolumonas auensis DSM 9187]
          Length = 712

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 35/113 (30%), Gaps = 20/113 (17%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +  W+ K  + + +  L     ++ DLIF DPP         +     + D   
Sbjct: 580 NMRHNGLTSWQHKFEQADCLDWLRHCE-QTFDLIFIDPP--------TFSNSKRMDDTFD 630

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
              D               +   +++L P+G +    +          L  L 
Sbjct: 631 VQRDHID-----------VMAMLKKILNPDGLIVFSNNKRQFKMDFNGLAELG 672


>gi|88855943|ref|ZP_01130605.1| ubiquinone/menaquinone biosynthesis methyltransferase [marine
           actinobacterium PHSC20C1]
 gi|88814810|gb|EAR24670.1| ubiquinone/menaquinone biosynthesis methyltransferase [marine
           actinobacterium PHSC20C1]
          Length = 255

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 19/126 (15%)

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ---------PLG 272
           +PG+ ILD   G+GTS A   +     +G++     ++ A KR   ++         P G
Sbjct: 45  EPGERILDIAAGTGTSSAALHRNGARVVGLDFSTGMVEQARKRHKKIEFIQGNAEQLPFG 104

Query: 273 NIELTVLT-----GKRTEPRVAFNLLVERGLIQPGQIL--TNAQGNISATVCADGTLISG 325
           + E   +T         +PR A + +    +++PG  L  T       A V A G     
Sbjct: 105 DNEFDAVTISFGLRNINDPRAALSEMF--RVLKPGGRLVITEFSKPPVAIVRA-GYFTYL 161

Query: 326 TELGSI 331
             +  I
Sbjct: 162 NRVMPI 167


>gi|326381662|ref|ZP_08203356.1| hypothetical protein SCNU_01905 [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199909|gb|EGD57089.1| hypothetical protein SCNU_01905 [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 698

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 12/128 (9%)

Query: 250 GIEMKQDYIDI----ATKRIASVQPLGNIELTVLTGKRTEPR--VAFNLLVERGLIQPGQ 303
           G E  ++ ID         + +V P+ +     +   +++P+  V    L++ GL+ PG+
Sbjct: 569 GAEWDEEMIDQRTESMIDTLLTVWPVPDGHTGTVLDPQSKPQEWVELKHLIDAGLLAPGE 628

Query: 304 ILTNAQGNI---SATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
           ++     ++    A V A GTL       S              NGW+FW  +   +L  
Sbjct: 629 VVQPVSQDLAGTRAIVTAHGTLALDGREFSTPSGAGHHVRKRATNGWHFWVLDDGRKL-- 686

Query: 361 INTLRILV 368
            N LR   
Sbjct: 687 -NDLRADF 693


>gi|300721813|ref|YP_003711091.1| methylation of 50S ribosomal subunit protein L11 [Xenorhabdus
           nematophila ATCC 19061]
 gi|297628308|emb|CBJ88869.1| methylation of 50S ribosomal subunit protein L11 [Xenorhabdus
           nematophila ATCC 19061]
          Length = 293

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 7/108 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  +          S   +P       + +     G   HPT    +L  + 
Sbjct: 95  WEREWMDNFHPMCFGKRLWICPSWREVPEPGAVNVMLDPGLAFGTGTHPTT---SLCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           L      G  ++D   GSG     A KL  +  IGI++    I  +  
Sbjct: 152 LDGLDLAGKTVIDFGCGSGILAIAALKLGAKHAIGIDIDPQAIQASRD 199


>gi|229843906|ref|ZP_04464047.1| type III restriction/modification system modification methylase
           [Haemophilus influenzae 6P18H1]
 gi|229812900|gb|EEP48588.1| type III restriction/modification system modification methylase
           [Haemophilus influenzae 6P18H1]
          Length = 405

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 70/226 (30%), Gaps = 29/226 (12%)

Query: 106 GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL-----IWASPSPK 160
           G++             N +++     R   P      R  +     +     ++ + +  
Sbjct: 103 GAWKATPLHAKSGDEKNNYVIEFPNGRNWTPPKGRFPRYSKQKLMEIYKDGGLYFNKNGG 162

Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILV-S 219
               T+  +  +          +        +E L    G+      K   L+S I   +
Sbjct: 163 IDKKTYLSEVKQHITAGSVWNYEDAGHTHGNNEELSELIGKGEFENPKGTKLISLICQIA 222

Query: 220 STKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           +    DI+LD   GSGT+      L       R  I IE      +I  KR+ +V    N
Sbjct: 223 NVGTNDIVLDYHAGSGTTAHTIFNLNQKDAGNRQVILIEQMDYIHNITVKRLQTVLKKNN 282

Query: 274 IELTVL---------TGKRT--------EPRVAFNLLVERGLIQPG 302
           +    +         T K+         E +  FN L ER  ++  
Sbjct: 283 LTQDFVYAELAPFNETAKQQILACESLDEIKTLFNELCERYFLKYN 328


>gi|237654104|ref|YP_002890418.1| ribosomal protein L11 methyltransferase [Thauera sp. MZ1T]
 gi|237625351|gb|ACR02041.1| ribosomal protein L11 methyltransferase [Thauera sp. MZ1T]
          Length = 300

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 51/130 (39%), Gaps = 12/130 (9%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYI 258
           G   HPT +   L    L     PG  +LD   GSG  G  A KL    + GI++ +  +
Sbjct: 146 GTGSHPTTR---LCLEWLCEVVTPGCSVLDYGCGSGILGIAAAKLGAGAVLGIDIDEKAV 202

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + A    A       ++ + +    T     F+L+V   L  P  +L  A   ISA V  
Sbjct: 203 EAARDNAARNHAAVRLQHSAVPVGDT-----FDLVVANILTNPLCVLAPA---ISARVAP 254

Query: 319 DGTLISGTEL 328
            G +     L
Sbjct: 255 GGRVALSGVL 264


>gi|115289048|gb|ABI85535.1| M.Hin1056ModP-5 [Haemophilus influenzae]
          Length = 322

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 13/104 (12%)

Query: 21  DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       V LI+ DPPY        Y       D+    ++    
Sbjct: 211 NLIIKGNNLIALHSLAKQFKGKVKLIYIDPPY--------YFVKKKPQDSFG--YNTNFK 260

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
              +  F +  LL  + +L  +G + +         +  +L  +
Sbjct: 261 LSTWLTFMKNRLLIAKELLTDDGIIVISIDDDGNAYLKILLDEI 304


>gi|291296860|ref|YP_003508258.1| hypothetical protein Mrub_2487 [Meiothermus ruber DSM 1279]
 gi|290471819|gb|ADD29238.1| hypothetical protein Mrub_2487 [Meiothermus ruber DSM 1279]
          Length = 328

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 10/80 (12%)

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
           D   R  W+ P    S RL     E L+P      +   ++   ++PG +++DP  G GT
Sbjct: 125 DWASRPVWIFPADKRSRRL-----EGLNPA-----IAEVLIQRYSEPGGLVVDPMAGRGT 174

Query: 237 SGAVAKKLRRSFIGIEMKQD 256
               A +L R   G ++  D
Sbjct: 175 VVQKALELGRKAWGSDINGD 194


>gi|118576019|ref|YP_875762.1| DNA modification methylase [Cenarchaeum symbiosum A]
 gi|118194540|gb|ABK77458.1| DNA modification methylase [Cenarchaeum symbiosum A]
          Length = 422

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 27/71 (38%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           W        ER++       +  +    L+   L    K   +I DPF GSGT+   +  
Sbjct: 48  WKEDSLPQKERMKYTHTIHPYFGKFVPHLVRYFLERHLKNAKLICDPFMGSGTTLIESNL 107

Query: 244 LRRSFIGIEMK 254
                +G+++ 
Sbjct: 108 AGIPSVGMDIS 118


>gi|113869127|ref|YP_727616.1| ribosomal protein L11 methyltransferase [Ralstonia eutropha H16]
 gi|123032690|sp|Q0K6X3|PRMA_RALEH RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|113527903|emb|CAJ94248.1| Ribosomal protein L11 methyltransferase [Ralstonia eutropha H16]
          Length = 300

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 51/135 (37%), Gaps = 22/135 (16%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  + L  + KPG+ +LD   GSG    VA+KL     +GI++  + +
Sbjct: 145 GTGSHPTTR---LCMQWLEQNLKPGETVLDYGCGSGILAIVARKLGAGDTVGIDIDPNAV 201

Query: 259 DIA-----TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNIS 313
           + +       R+ +   L                     LV   ++     L      +S
Sbjct: 202 EASRYNAERNRVEASFALPESVSEAS-----------YDLVVANIL--SNPLKLMAAMLS 248

Query: 314 ATVCADGTLISGTEL 328
           A V A G L+    L
Sbjct: 249 ARVRAGGRLVLSGVL 263


>gi|21674725|ref|NP_662790.1| DNA methylase, putative [Chlorobium tepidum TLS]
 gi|21647935|gb|AAM73132.1| DNA methylase, putative [Chlorobium tepidum TLS]
          Length = 375

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +    P      ++   +K GD I+DPF G  +S      L R+ +G+E+  
Sbjct: 24  YYAMFPLEFAFDVVEKYSKNGDYIIDPFAGRCSSIYAGGVLGRNSLGLEINP 75


>gi|323704525|ref|ZP_08116103.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535987|gb|EGB25760.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 854

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 2/88 (2%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP--TQKPEALLSRIL 217
               +  ++        D +       P  +     +N      H   T+ P   + R +
Sbjct: 37  CPNLFINDFIEKYGKPYDEETDDYKCEPYAADVSEGKNDPIYNAHSYHTKVPHKAIMRYI 96

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +  TKPGDI+ D F G+G +G  A+   
Sbjct: 97  LHYTKPGDIVFDGFCGTGMTGVAAQMCG 124



 Score = 41.1 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 12/86 (13%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ---------LYRPDHSLVDAVTDSWD 73
           +  G++I+ L  +   SVD IF DPP+   L            L    ++  +A+ +   
Sbjct: 450 LYLGSTINTL--IKPNSVDYIFTDPPFGDNLMYSELNFLWESWLKVFTNNKTEAIINKTQ 507

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPN 99
           K      Y            R+LKP 
Sbjct: 508 K-KGLHEYQELMEKCFSEMYRILKPG 532


>gi|85058998|ref|YP_454700.1| 23S rRNA m(2)G2445 methyltransferase [Sodalis glossinidius str.
           'morsitans']
 gi|123519637|sp|Q2NU80|RLML_SODGM RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|84779518|dbj|BAE74295.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 713

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 20/102 (19%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++I+ + ++ L  +  ++ D+IF DPP         +     + D   
Sbjct: 582 NLRSNGLVGRQHRLIQADCLAWLA-MAQETFDVIFIDPP--------TFSNSKRMADTFD 632

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
              D             A +   +R+L+P GTL    +    
Sbjct: 633 VQRDHL-----------ALMAQLKRLLRPGGTLMFSNNKRGF 663


>gi|39841595|gb|AAR31202.1| unknown [Burkholderia pseudomallei 1026b]
          Length = 70

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 11/74 (14%)

Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
          +++ G+S   L  +   S  LI   PPY           D +    +  +  +  ++ A+
Sbjct: 8  QVVHGDSRD-LSFMEDGSASLIVTSPPY----------WDKADYGDIHSNIGRRDTYVAF 56

Query: 82 DAFTRAWLLACRRV 95
              R     C RV
Sbjct: 57 LDNMRDVFRECLRV 70


>gi|312171982|emb|CBX80239.1| UPF0020/UPF0064 protein ycbY [Erwinia amylovora ATCC BAA-2158]
          Length = 705

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 20/102 (19%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++++ + +S L +   +  DLIF DPP         +     + ++  
Sbjct: 580 NMRLNGLSGRQHRLMQADCLSWLRE-ADEQFDLIFIDPP--------TFSNSKRMEESFD 630

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
              D               +   +R+L+ NGT+    +    
Sbjct: 631 VQRDHL-----------ELMKDLKRLLRKNGTVMFSNNKRGF 661


>gi|292487860|ref|YP_003530735.1| hypothetical protein EAMY_1377 [Erwinia amylovora CFBP1430]
 gi|292899086|ref|YP_003538455.1| RNA methylase [Erwinia amylovora ATCC 49946]
 gi|291198934|emb|CBJ46044.1| putative RNA methylase [Erwinia amylovora ATCC 49946]
 gi|291553282|emb|CBA20327.1| UPF0020/UPF0064 protein ycbY [Erwinia amylovora CFBP1430]
          Length = 705

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 20/102 (19%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++++ + +S L +   +  DLIF DPP         +     + ++  
Sbjct: 580 NMRLNGLSGRQHRLMQADCLSWLRE-ADEQFDLIFIDPP--------TFSNSKRMEESFD 630

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
              D               +   +R+L+ NGT+    +    
Sbjct: 631 VQRDHL-----------ELMKDLKRLLRKNGTVMFSNNKRGF 661


>gi|109947283|ref|YP_664511.1| methyltransferase fragment 1 [Helicobacter acinonychis str. Sheeba]
 gi|109714504|emb|CAJ99512.1| methyltransferase fragment 1 [Helicobacter acinonychis str. Sheeba]
          Length = 213

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 40/105 (38%), Gaps = 13/105 (12%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K K+I G++ + +  L     K + +I+ DPPY     G+  + +++             
Sbjct: 91  KHKLIIGDNYNAINNLLIQYRKQIKVIYIDPPYGKDSMGESAQTNYTNAIKR-------- 142

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
             +         L   +++LK +G ++      N   +  +   +
Sbjct: 143 --DNLLTMLYNRLQLAKQLLKDDGVIFCSIDDRNHAYVKCLFDEV 185


>gi|297527192|ref|YP_003669216.1| putative RNA methylase [Staphylothermus hellenicus DSM 12710]
 gi|297256108|gb|ADI32317.1| putative RNA methylase [Staphylothermus hellenicus DSM 12710]
          Length = 337

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 209 PEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           P  L   ++ ++  K G+++LDPF G+G+    A  ++   IGIE+    I  A + +
Sbjct: 171 PVRLSRLLINLARVKEGEVLLDPFAGTGSILIEALMMKIRPIGIEIDWKLIHGARENL 228


>gi|320656848|gb|EFX24716.1| putative DNA methylase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
          Length = 44

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 19/39 (48%)

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            F GSG++   A  L R   G+E++ +  +   + +  +
Sbjct: 1   FFMGSGSTVKAALALGRRATGVELETERFEQTVREVQDL 39


>gi|294635636|ref|ZP_06714112.1| putative methylase [Edwardsiella tarda ATCC 23685]
 gi|291091019|gb|EFE23580.1| putative methylase [Edwardsiella tarda ATCC 23685]
          Length = 705

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 42/144 (29%), Gaps = 25/144 (17%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++++ + ++ L     K  DLIF DPP          +      D   
Sbjct: 579 NLRLNGLTGRQHRLVQADCLAYLRHCEDK-FDLIFIDPP-----TFSNSKRMEGTFDVQR 632

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
           D  D  +                 R+L+P G +    +       G  +       L   
Sbjct: 633 DHLDLMADL--------------ARILRPGGAIMFSNNKR-----GFKMDQAGMTRLGLQ 673

Query: 130 VWRKSNPMPNFRGRRFQNAHETLI 153
               +    +    R +  H   +
Sbjct: 674 AQEITERTLSADFVRNRQIHNCWL 697


>gi|225551621|ref|ZP_03772567.1| DNA methylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|225379436|gb|EEH01801.1| DNA methylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
          Length = 368

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           G++ L +          KP+ L+  +L         +LD F GSGT+G    +L 
Sbjct: 197 GTKELNDILENNNFSYPKPKELICYLLEIIQNKNARVLDFFAGSGTTGHAVLELN 251


>gi|307263348|ref|ZP_07544965.1| Type III restriction-modification system methylation subunit
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
 gi|306871314|gb|EFN03041.1| Type III restriction-modification system methylation subunit
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
          Length = 991

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 59/191 (30%), Gaps = 18/191 (9%)

Query: 92  CRRVLKPNGTLWVIGS---YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
                  +G +  IG         +   +L +         ++  +      + R  + +
Sbjct: 591 FYPFYVKDGKIIGIGDIPDDDFHPKTANVLLDDGVI----AIYPLNEDGNEKKWRYARQS 646

Query: 149 HETLIWA---SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
            E ++          +    FN D     +  +  + D         + +   +  K   
Sbjct: 647 VEKILDKLEAKSGRSSIQIIFNKDTGVMRSLWIDPKYDASEYGTKVLQAVLGVEDAKNFS 706

Query: 206 TQKPEALLSRILVS--STKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDY 257
             K    +  I+ +   +   + +LD F GSGT+      L       R +I +E  + +
Sbjct: 707 YPKSIHTVKEIVSAQLGSNEDNFVLDYFAGSGTTAHAVINLNREDNGNRKYILVEQGEYF 766

Query: 258 IDIATKRIASV 268
             +   R+  V
Sbjct: 767 DTVLKPRVQKV 777



 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 43/143 (30%), Gaps = 18/143 (12%)

Query: 23  IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +I  ++   L  L     + V  I+ DPPYN   +  LY+                    
Sbjct: 433 LIHSDNFQALNLLQERYKEQVKCIYIDPPYNANSSEILYKNTFK--------------HS 478

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           A+ +     +   + +L    +  V         +G +L           +    NP   
Sbjct: 479 AWLSLMSNRIELGKNLLARESSQAVAIDEVEQELLGQLLSLTFTDWTKVALPIVHNPRGQ 538

Query: 140 FRGRRFQNAHETLIWASPSPKAK 162
            +G+     HE      P+   K
Sbjct: 539 -QGKNISYVHEYFYLIYPTDSEK 560


>gi|328953049|ref|YP_004370383.1| protein of unknown function DUF1156 [Desulfobacca acetoxidans DSM
           11109]
 gi|328453373|gb|AEB09202.1| protein of unknown function DUF1156 [Desulfobacca acetoxidans DSM
           11109]
          Length = 1074

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 26/125 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY--NLQL----NGQLYRPDHSLVDAVTDSWDKF 75
            I+ G + + + ++P +SVDL+  DPPY  N+Q     +        +L D   + +++ 
Sbjct: 646 TILHG-TAAHMPQVPDRSVDLVCMDPPYYNNVQYAELSDYFYVWQKRTLKDLYPELFNRR 704

Query: 76  SSFE-------------------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
            + +                   AY+         CRRVLK  G L ++ ++ +      
Sbjct: 705 LTNKQEEAVANPARDGSAKGAKTAYERMMGEIFAECRRVLKDEGLLTLMFTHKSQDAWEA 764

Query: 117 MLQNL 121
           ++++L
Sbjct: 765 LIRSL 769


>gi|332531769|ref|ZP_08407654.1| ribosomal protein L11 methyltransferase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038745|gb|EGI75187.1| ribosomal protein L11 methyltransferase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 293

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 10/152 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++   +     S   IP       L +     G   H T    AL  + 
Sbjct: 95  WEREWMDNFHPIQFGEKLWICPSWRDIPDPDAVNVLLDPGLAFGTGTHATT---ALCLKW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG  G  A KL     IGI++    ++ +   + +    G  +
Sbjct: 152 LESQDLTGKTVVDFGCGSGILGIAAIKLGAERMIGIDIDPQALEAS---LDNANRNGVAD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTN 307
              +     +P  + +++V   L QP + L +
Sbjct: 209 KLEVYLPENQPEFSADIVVANILAQPLRELHS 240


>gi|317047590|ref|YP_004115238.1| rRNA (guanine-N(2)-)-methyltransferase [Pantoea sp. At-9b]
 gi|316949207|gb|ADU68682.1| rRNA (guanine-N(2)-)-methyltransferase [Pantoea sp. At-9b]
          Length = 716

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 20/113 (17%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++++ + +S L +   +  DLIF DPP         +     + D   
Sbjct: 591 NLRLNGLTGRQHRLMQADCLSWLRE-SNEQFDLIFIDPP--------TFSNSKRMEDDFD 641

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
              D               +   +R+L+  GT+    +          LQ L 
Sbjct: 642 VQRDHLM-----------LMQNLKRLLRRGGTIMFSNNKRGFKMDLDGLQRLG 683


>gi|77359314|ref|YP_338889.1| 50S ribosomal protein L11 methyltransferase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|123588623|sp|Q3IIC0|PRMA_PSEHT RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|76874225|emb|CAI85446.1| methylation of 50S ribosomal subunit protein L11 (ribosomal protein
           L11 methyltransferase) [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 293

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 59/166 (35%), Gaps = 10/166 (6%)

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEK 202
           QN    +         + +  N+  ++         S   IP       L +     G  
Sbjct: 81  QNLTYKIEQLEDKDWEREWMDNFHPIQFGKRLWICPSWRDIPDPDAVNVLLDPGLAFGTG 140

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIA 261
            H T    AL  + L S    G  ++D   GSG  G  A KL     IGI++    ++ +
Sbjct: 141 THATT---ALCLKWLESQDLTGKTVVDFGCGSGILGIAAIKLGAERMIGIDIDPQALEAS 197

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTN 307
              + +    G  +   +     +P  + +++V   L QP + L +
Sbjct: 198 ---LDNANRNGVADKLEVYLPENQPEFSADIVVANILAQPLRELHS 240


>gi|329934859|ref|ZP_08284900.1| hypothetical protein SGM_0612 [Streptomyces griseoaurantiacus M045]
 gi|329305681|gb|EGG49537.1| hypothetical protein SGM_0612 [Streptomyces griseoaurantiacus M045]
          Length = 699

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 287 RVAFNLLVERGLIQPGQILTNA--QGNISATVCADGTLISGTELGSIHRVGAKVSGSETC 344
           R+  + L++ GLI  G +LT A  +   +A V   G +    ++       A   G+ T 
Sbjct: 613 RIKLSELLDAGLISAGTVLTPAWEEYEQAAVVDEQGRIRLDEQIHDTPSGAANAVGAGT- 671

Query: 345 NGWNFWYFEKLGELHSINTLRI 366
           NGW FW  +      ++  LR 
Sbjct: 672 NGWTFWLADTPDGQVTLADLRA 693


>gi|308188308|ref|YP_003932439.1| ribosomal protein L11 methyltransferase [Pantoea vagans C9-1]
 gi|308058818|gb|ADO10990.1| ribosomal protein L11 methyltransferase [Pantoea vagans C9-1]
          Length = 293

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 7/108 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P       + +     G   HPT    +L    
Sbjct: 95  WEREWMENFHPMRFGERLWICPSWRDVPDPDAVNVMLDPGLAFGTGTHPTT---SLCLTW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           L      G  ++D   GSG     A KL     IGI++    I  +  
Sbjct: 152 LDGLDLEGKTVIDFGCGSGILAIAALKLGAAQAIGIDIDPQAIQASRD 199


>gi|161936282|ref|YP_131495.2| ribosomal protein L11 methyltransferase [Photobacterium profundum
           SS9]
 gi|60390454|sp|Q6LLY5|PRMA_PHOPR RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
          Length = 294

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 53/168 (31%), Gaps = 12/168 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S    P  +    L +     G   HPT    +L    
Sbjct: 96  WEREWMVNFHPMRFGRRLWICPSWREAPEPNAVNVLLDPGLAFGTGTHPTT---SLCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  I+D   GSG     A KL     IGI++    I  +     + +  G  +
Sbjct: 153 LDGQDLVGKTIIDFGCGSGILAIAALKLGAEKVIGIDIDPQAIQASRD---NAERNGVSD 209

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
              L   + +P      +V   ++     L      I + V   G L 
Sbjct: 210 KLALFLPQDQPTDVQADVVVANIL--AGPLRELSPVIKSLVKPGGKLA 255


>gi|46914918|emb|CAG21693.1| putative ribosomal protein L11 methyltransferase [Photobacterium
           profundum SS9]
          Length = 317

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 53/168 (31%), Gaps = 12/168 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S    P  +    L +     G   HPT    +L    
Sbjct: 119 WEREWMVNFHPMRFGRRLWICPSWREAPEPNAVNVLLDPGLAFGTGTHPTT---SLCLEW 175

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  I+D   GSG     A KL     IGI++    I  +     + +  G  +
Sbjct: 176 LDGQDLVGKTIIDFGCGSGILAIAALKLGAEKVIGIDIDPQAIQASRD---NAERNGVSD 232

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
              L   + +P      +V   ++     L      I + V   G L 
Sbjct: 233 KLALFLPQDQPTDVQADVVVANIL--AGPLRELSPVIKSLVKPGGKLA 278


>gi|323144448|ref|ZP_08079051.1| ribosomal RNA large subunit methyltransferase L [Succinatimonas
           hippei YIT 12066]
 gi|322415763|gb|EFY06494.1| ribosomal RNA large subunit methyltransferase L [Succinatimonas
           hippei YIT 12066]
          Length = 818

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 49/154 (31%), Gaps = 25/154 (16%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N+I       I+ + ++ L     +S DLI+ DPP         +     +     
Sbjct: 592 NFKLNNISLKGHDFIQADCLAWLSSDHNESFDLIYIDPP--------TFSNSKRMSKTFD 643

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
              D               L    R LK  G +    +    F++   +++  F + +  
Sbjct: 644 VQRDHLM-----------LLANLTRHLKDGGNVI-FCTNRRNFKLDENIKDYGFTVKDIT 691

Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
            +            R +N+H   + +    + KG
Sbjct: 692 KFTIPRDFM-----RSKNSHSCFMLSFTKAECKG 720


>gi|219121879|ref|XP_002181285.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407271|gb|EEC47208.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 460

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 25/104 (24%)

Query: 23  IIKGNSISVL------EKLPAKSVDLIFADPPYNL--QLNGQLYRPDHSLVDAVTDSWDK 74
           ++ G+S + L      + +   + DLI  DPPY +    N     P   L  ++    D 
Sbjct: 338 LLHGDSTNELMREEAKKAIGNDAFDLIITDPPYGIRESSNYNTLTPAEELFQSIAKDRDL 397

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
                             RR+LK  G L      +    +  +L
Sbjct: 398 G-----------------RRLLKKGGRLVCFVPCNEDENLEDVL 424


>gi|86757496|gb|ABD15135.1| M2.BsrDI [Geobacillus stearothermophilus]
          Length = 425

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 16/100 (16%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ--- 255
            G   +  + P  + S ++   T   D++ D   GSGT+G  A  L R     ++     
Sbjct: 66  HGAFRYFGKFPPPIASYLIQEYTLKDDLVWDLMCGSGTTGVEAILLNRFCNLNDVNPLSR 125

Query: 256 -------DYIDI-----ATKR-IASVQPLGNIELTVLTGK 282
                   YID      A +R I + +PL   +  V T +
Sbjct: 126 LISRVKTRYIDKEVLENAMQRIINNYKPLTKEQYWVETLE 165


>gi|304314695|ref|YP_003849842.1| adenine-specific DNA methylase [Methanothermobacter marburgensis
           str. Marburg]
 gi|302588154|gb|ADL58529.1| predicted adenine-specific DNA methylase [Methanothermobacter
           marburgensis str. Marburg]
          Length = 886

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 68/205 (33%), Gaps = 34/205 (16%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY--NLQLN----------- 54
            +N+N+N+      K+++G++ S+      +  D +F DPPY  N+  +           
Sbjct: 475 KLNKNENT-----PKVVQGSATSL--PFDDEYFDAVFTDPPYYDNVPYSYLSDFFYVWLK 527

Query: 55  ---GQLY--------RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG--- 100
              G LY         P    + A T+      + E +++  R       RVL+P G   
Sbjct: 528 RAIGDLYPDLFITPLTPKRGEMVAYTNDKSMDEASEEFESMLRDSFREIHRVLRPGGIAN 587

Query: 101 TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
            ++   + H    +   L +    +                 +    A    I A     
Sbjct: 588 IVYAHKTTHGWETVINSLLDSGLIVTASWPIFTEMRARMRAQKSAALASSIYIVARKPDF 647

Query: 161 AKGYTFNYDALKAANEDVQMRSDWL 185
            K   +  +      E +  + ++L
Sbjct: 648 EKKTGYYEEVQAELKEVLGEKLEYL 672



 Score = 37.3 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 18/52 (34%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           Q       R +         +LDPF G G+    A +L      +++    +
Sbjct: 82  QGMIERARRDIREYHGRPPRVLDPFGGGGSIPLEALRLGCETYSMDLNPVAV 133


>gi|15921183|ref|NP_376852.1| hypothetical protein ST0947 [Sulfolobus tokodaii str. 7]
 gi|15621968|dbj|BAB65961.1| 306aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 306

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 28/47 (59%)

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           + R++V+ +K    ILDPF G+GT    AK L  + IG+++    I+
Sbjct: 152 IGRLMVNLSKSRKTILDPFVGTGTILIEAKWLGLNCIGLDVDSKMIE 198


>gi|323498781|ref|ZP_08103767.1| ribosomal protein L11 methyltransferase [Vibrio sinaloensis DSM
           21326]
 gi|323316143|gb|EGA69168.1| ribosomal protein L11 methyltransferase [Vibrio sinaloensis DSM
           21326]
          Length = 295

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 47/144 (32%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  +K         S   IP       + +     G   HPT    AL    
Sbjct: 96  WEREWMDNFHPMKFGERLWICPSWRDIPEPDAVNVMLDPGLAFGTGTHPTT---ALCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG     A KL     IGI++    +  +     + +  G  E
Sbjct: 153 LEGLDLTGKTVIDFGCGSGILAIAAIKLGAEKVIGIDIDPQALLASKD---NAERNGVAE 209

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              +   + +P      +V   ++
Sbjct: 210 QLEVFLPQDQPAGLIADVVVANIL 233


>gi|289209404|ref|YP_003461470.1| ribosomal protein L11 methyltransferase [Thioalkalivibrio sp.
           K90mix]
 gi|288945035|gb|ADC72734.1| ribosomal protein L11 methyltransferase [Thioalkalivibrio sp.
           K90mix]
          Length = 293

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 8/120 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT    A+  + L ++      +LD   GSG     A KL  R  +G ++ +  +
Sbjct: 137 GTGNHPTT---AMCLKSLAANPPRDQEVLDYGCGSGILAIAALKLGARHAVGTDIDRQAV 193

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
                  A+   +   ++         P   F+L++   L +P   L +    ++     
Sbjct: 194 QATYSN-AAANDISEDQIEAGLTDHPVPDAGFDLVIANILAKP---LIDLAPELACAARP 249


>gi|14590253|ref|NP_142319.1| hypothetical protein PH0338 [Pyrococcus horikoshii OT3]
 gi|3256729|dbj|BAA29412.1| 329aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 329

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 53/161 (32%), Gaps = 10/161 (6%)

Query: 109 HNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP---KAKGYT 165
           +    I  +L         +I+   +      R R     HE             ++G  
Sbjct: 62  YEGDDIKDILDFAKGLEWRNII---NGTFAVRRERMRNCMHEVNDLDKKIGGIIHSQGLR 118

Query: 166 FNYDALKAANEDVQMRSDWL-IPICSGSERLRNKDGEKLHPTQKPEALLSRI---LVSST 221
            N                WL I I     +          P  +P AL  RI   +V+ T
Sbjct: 119 VNLSRPDTVVRVYCGNKIWLGIRIREFKGKEFEDRKADRRPFSRPIALPPRIARAMVNLT 178

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           K    +LDPF G+G     A  +     G+++++D ++ A 
Sbjct: 179 KATREVLDPFMGTGGMLIEAGLIGLKVYGLDIREDMVEGAK 219


>gi|28899657|ref|NP_799262.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153839616|ref|ZP_01992283.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus
           AQ3810]
 gi|260361497|ref|ZP_05774544.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus
           K5030]
 gi|260878172|ref|ZP_05890527.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus
           AN-5034]
 gi|260895468|ref|ZP_05903964.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus
           Peru-466]
 gi|260903324|ref|ZP_05911719.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus
           AQ4037]
 gi|38605240|sp|Q87KU2|PRMA_VIBPA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|28807909|dbj|BAC61146.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149746855|gb|EDM57843.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus
           AQ3810]
 gi|308088059|gb|EFO37754.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus
           Peru-466]
 gi|308094108|gb|EFO43803.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus
           AN-5034]
 gi|308109531|gb|EFO47071.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus
           AQ4037]
 gi|308112847|gb|EFO50387.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus
           K5030]
 gi|328472221|gb|EGF43091.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus
           10329]
          Length = 295

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 54/168 (32%), Gaps = 12/168 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  +K         S   +P       + +     G   HPT    AL    
Sbjct: 96  WEREWMENFHPMKFGERLWICPSWREVPEPDAVNVMLDPGLAFGTGTHPTT---ALCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG     A KL     IGI++    +  +     + +  G  +
Sbjct: 153 LESMDLSGKTVIDFGCGSGILAIAAIKLGAEKVIGIDIDPQALLASKD---NAERNGVAD 209

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
              +   + +P      +V   ++     L      I   V  +G L 
Sbjct: 210 KLEVYLPQNQPEGLIADVVVANIL--AGPLRELAPIIKGLVKPNGALA 255


>gi|169825524|ref|YP_001695699.1| hypothetical protein Bsph_p110 [Lysinibacillus sphaericus C3-41]
 gi|168994801|gb|ACA42340.1| hypothetical protein Bsph_p110 [Lysinibacillus sphaericus C3-41]
          Length = 350

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 7/45 (15%)

Query: 12  NQNSIFEWKDKI-------IKGNSISVLEKLPAKSVDLIFADPPY 49
           N NS+    + +          +++  L+    +SVD++  DPPY
Sbjct: 195 NNNSLAHMTNDLNTKYETDFHMDALEFLKLFADESVDVVLFDPPY 239


>gi|156744304|ref|YP_001434433.1| hypothetical protein Rcas_4397 [Roseiflexus castenholzii DSM 13941]
 gi|156235632|gb|ABU60415.1| conserved hypothetical protein [Roseiflexus castenholzii DSM 13941]
          Length = 475

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 208 KPEALLSRILVSSTKPGDI-ILDPFFGSGTSGAVAKKLRRSFIGIEMKQ-DYIDIATK 263
            P  L+   L       D  +LDPF G+GT+    KKL    IG+E     Y     K
Sbjct: 50  FPPHLVRDYLQRFGIGRDHTVLDPFCGTGTTIVECKKLGIPSIGVEAMPWAYFVTTVK 107


>gi|313667114|gb|ADR73006.1| M.BspHI [Bacillus sp. H(2010)]
          Length = 411

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 3/93 (3%)

Query: 164 YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVS--ST 221
           Y      ++  N +      W IP              + +  + P  L  +I+      
Sbjct: 13  YQKFPPLIEEINGEEIPTFQWDIPYTIKDISYLTHSHYRYYG-KFPSVLAGKIIDLFPPK 71

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
                ILD F GSGT+   AK    + +G+++ 
Sbjct: 72  DKNSYILDNFCGSGTTLVEAKLRGINSVGLDIN 104


>gi|307245564|ref|ZP_07527650.1| Type III restriction-modification system methylation subunit
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307254519|ref|ZP_07536354.1| Type III restriction-modification system methylation subunit
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307258974|ref|ZP_07540705.1| Type III restriction-modification system methylation subunit
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|306853266|gb|EFM85485.1| Type III restriction-modification system methylation subunit
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306862502|gb|EFM94461.1| Type III restriction-modification system methylation subunit
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306866998|gb|EFM98855.1| Type III restriction-modification system methylation subunit
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
          Length = 960

 Score = 46.5 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 59/191 (30%), Gaps = 18/191 (9%)

Query: 92  CRRVLKPNGTLWVIGS---YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
                  +G +  IG         +   +L +         ++  +      + R  + +
Sbjct: 560 FYPFYVKDGKIIGIGDIPDDDFHPKTANVLLDDGVI----AIYPLNEDGNEKKWRYARQS 615

Query: 149 HETLIWA---SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
            E ++          +    FN D     +  +  + D         + +   +  K   
Sbjct: 616 VEKILDKLEAKSGRSSIQIIFNKDTGVMRSLWIDPKYDASEYGTKVLQAVLGVEDAKNFS 675

Query: 206 TQKPEALLSRILVS--STKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDY 257
             K    +  I+ +   +   + +LD F GSGT+      L       R +I +E  + +
Sbjct: 676 YPKSIHTVKEIVSAQLGSNEDNFVLDYFAGSGTTAHAVINLNREDNGNRKYILVEQGEYF 735

Query: 258 IDIATKRIASV 268
             +   R+  V
Sbjct: 736 DTVLKPRVQKV 746



 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 43/143 (30%), Gaps = 18/143 (12%)

Query: 23  IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +I  ++   L  L     + V  I+ DPPYN   +  LY+                    
Sbjct: 402 LIHSDNFQALNLLQERYKEQVKCIYIDPPYNANSSEILYKNTFK--------------HS 447

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           A+ +     +   + +L    +  V         +G +L           +    NP   
Sbjct: 448 AWLSLMSNRIELGKNLLARESSQAVAIDEVEQELLGQLLSLTFTDWTKVALPIVHNPRGQ 507

Query: 140 FRGRRFQNAHETLIWASPSPKAK 162
            +G+     HE      P+   K
Sbjct: 508 -QGKNISYVHEYFYLIYPTDSEK 529


>gi|159905188|ref|YP_001548850.1| putative RNA methylase [Methanococcus maripaludis C6]
 gi|159886681|gb|ABX01618.1| putative RNA methylase [Methanococcus maripaludis C6]
          Length = 351

 Score = 46.5 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 9/120 (7%)

Query: 203 LHP-TQKPEALLSRILVSST--KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
            HP    P+  L+R LV+ +  K G+I+LDPF G+G     A  L    IG ++ +  + 
Sbjct: 184 FHPGCIMPK--LARCLVNLSRVKEGEIVLDPFCGTGGFLIEAGFLGCKLIGSDIDEQMVK 241

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A   + +     ++   V++ K+ + +     L E G+ +   I+T+    IS +   D
Sbjct: 242 GAILNLNTY----DLSKQVISIKQNDAKNVSKYLEELGIEKIDGIVTDPPYGISTSKKGD 297


>gi|57640916|ref|YP_183394.1| N2, N2-dimethylguanosine tRNA methyltransferase [Thermococcus
           kodakarensis KOD1]
 gi|57159240|dbj|BAD85170.1| N2, N2-dimethylguanosine tRNA methyltransferase [Thermococcus
           kodakarensis KOD1]
          Length = 331

 Score = 46.5 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 194 RLRNKDGEKLHPTQKPEALL---SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           +   K      P  +P +L    SR LV+ TK    ILDPF G+G     A  L     G
Sbjct: 147 KDFEKRKAHHRPFFRPISLHPRVSRALVNLTKATREILDPFMGAGGILIEAGLLGLRVYG 206

Query: 251 IEMKQDYIDIATKRIA 266
           ++++ + ++ A   + 
Sbjct: 207 VDIRPEMVEGAETNLK 222


>gi|315924272|ref|ZP_07920496.1| protein-(glutamine-N5) methyltransferase [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622433|gb|EFV02390.1| protein-(glutamine-N5) methyltransferase [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 283

 Score = 46.5 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 20/130 (15%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY-------NLQLNGQ 56
           K +LAI ++       + ++I G+    L  LP +  D+I  +PPY       +L  + +
Sbjct: 152 KEALAIAKSNAQKHHIEAQLILGDLFEGL--LPGQRFDMIVTNPPYIPTDEIADLSPDIK 209

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
            Y P    +D   D +D          F +    +    LK  G L +   ++    +  
Sbjct: 210 NYEP-RVALDGGEDGYD----------FYKRLFASVHDHLKEQGYLVLECGWNQADTLID 258

Query: 117 MLQNLNFWIL 126
           M  + +    
Sbjct: 259 MAHSFSHIER 268


>gi|307317586|ref|ZP_07597025.1| DNA methylase N-4/N-6 domain protein [Sinorhizobium meliloti AK83]
 gi|306896744|gb|EFN27491.1| DNA methylase N-4/N-6 domain protein [Sinorhizobium meliloti AK83]
          Length = 270

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
             L  R       PG +ILDPF G    G VA KL RS++GI++ 
Sbjct: 39  CELAYR---WFCPPGGLILDPFSGGSVRGIVASKLGRSYLGIDLS 80


>gi|295109966|emb|CBL23919.1| RNA methyltransferase, RsmD family [Ruminococcus obeum A2-162]
          Length = 184

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 22  KIIKGNSISVLEKLPAK-SVDLIFADPPYNLQLNGQL--YRPDHSLVDAVT 69
           K++  + +  L  L  + + D IF DPPYN  L  Q+  Y  D SL D  T
Sbjct: 94  KLLNMDVLQALRSLEGEEAFDCIFMDPPYNHDLERQVLEYLSDSSLADDHT 144


>gi|284924504|emb|CBG37640.1| putative DNA modification methylase [Escherichia coli 042]
          Length = 1039

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 22/140 (15%)

Query: 23  IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +  G++  VL  +       VD I+ DPPYN   +  LY+  +                 
Sbjct: 476 LYSGDNYQVLNLIKIKYNNKVDGIYIDPPYNTNASEILYKNGYK--------------DS 521

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN--LNFWILNDIVWRKSNPM 137
           ++ +   + L   + +LK N         + +  +  +L+     + I   ++       
Sbjct: 522 SWCSLMSSRLEISKSLLKENAATCTTIDEYEVANLELLLKETFTGYQIRPVVIEYNHRGR 581

Query: 138 PNFRGRRFQNAHETLIWASP 157
                  F   HE  +W  P
Sbjct: 582 VKSN---FAITHEYALWTLP 598



 Score = 41.1 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 44/143 (30%), Gaps = 18/143 (12%)

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             R R  + A E  +WA          +     + A +    +S W+ P    S      
Sbjct: 685 YGRDRVIREAKEGTVWAKRIKGEIQIHY-----RQAGKPKMRKSVWIGPKLDASTYGSEL 739

Query: 199 DGEKLHPTQKPEALLS------RILVSSTK-PGDIILDPFFGSGTSGAVAKKLR------ 245
                + TQ   +           L S +       LD F GSGT+G     +       
Sbjct: 740 LNSLFNVTQINFSFPKSIYAVKECLESLSNSKYAHFLDYFAGSGTTGHAVVDMNRDDNGF 799

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R F  +E  + +  +   R+   
Sbjct: 800 RKFSLVEQGEYFYSVTLPRVKKA 822


>gi|308273415|emb|CBX30017.1| hypothetical protein N47_D28260 [uncultured Desulfobacterium sp.]
          Length = 1002

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 34/121 (28%), Gaps = 13/121 (10%)

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
           + +     W     S   R       K   T                    ILDPF G G
Sbjct: 38  KPIYQMHKWFARRASCVFRAILLGAMKPSGTDIMAEFYKDHTNDPDTNDIRILDPFMGGG 97

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
           T+   A +L     GI++      I        +P+             E + AF  L E
Sbjct: 98  TTVVEALRLGCRVTGIDLNPVAWFIVK---TEAEPVD----------IDELKAAFKRLEE 144

Query: 296 R 296
           R
Sbjct: 145 R 145


>gi|304360713|ref|YP_003856844.1| hypothetical protein phiCTP1_gp51 [Clostridium phage phiCTP1]
 gi|302495572|gb|ADL40352.1| hypothetical phage protein [Clostridium phage phiCTP1]
          Length = 299

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 53/164 (32%), Gaps = 28/164 (17%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           I G+S ++ + +  +  D+IF  PPY            + L     D      ++E +  
Sbjct: 145 ICGDSNNIEDLIKDRDFDMIFTSPPY------------YDLEVYSKDDMSALGTYEEFMK 192

Query: 84  FTRAWLLACRRVLKPNGTLWVI---------GSYHNIFRI-GTMLQNLNFWILNDIVWRK 133
             +     C  +L  +  L +          G Y N      ++++++ F   N+ +   
Sbjct: 193 QYKNIFAHCFNMLADDRFLVIKIGEIRDKKTGIYRNFIGDNISIMKDIGFKYYNEAILIN 252

Query: 134 S------NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
           S            R R+    H+ ++      +       +   
Sbjct: 253 SFGTAPIRARGQMRNRKMVKVHQNILVFYKGNEKNISNLKFWGN 296


>gi|254430054|ref|ZP_05043761.1| putative methyltransferase [Alcanivorax sp. DG881]
 gi|196196223|gb|EDX91182.1| putative methyltransferase [Alcanivorax sp. DG881]
          Length = 205

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 6   SLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
           S  +N     +FE +  +   +++S L     ++ DL+F DPPY+L L
Sbjct: 99  SADLNRQLTPLFEGRITVHCADALSWLPA-QREAFDLVFIDPPYDLGL 145


>gi|325107710|ref|YP_004268778.1| DNA methylase N-4/N-6 domain protein [Planctomyces brasiliensis DSM
           5305]
 gi|324967978|gb|ADY58756.1| DNA methylase N-4/N-6 domain protein [Planctomyces brasiliensis DSM
           5305]
          Length = 950

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           T+ P   + R L+  T PGDI+LD F G+G +G  A+   
Sbjct: 144 TKVPHKAIMRYLLHYTMPGDIVLDGFCGTGMTGVAAQMCG 183



 Score = 42.3 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 13/97 (13%)

Query: 34  KLPAKSVDLIFADPPY---------NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
           ++P  SVD +F DPP+         N+ +            +A+ D   K  S   Y   
Sbjct: 520 RIPDNSVDYVFTDPPFGENIYYSDLNILIESWHGVQTAPEQEAIVDRV-KEKSLLDYQRM 578

Query: 85  TRAWLLACRRVLKPNGTL-WVIGSYHNIFRIGTMLQN 120
                +   R+LKP   +     +  N  R+   +Q 
Sbjct: 579 MSDCFVNYYRMLKPGRWMTVEFHNSQN--RVWNAIQE 613


>gi|73542552|ref|YP_297072.1| ribosomal protein L11 methyltransferase [Ralstonia eutropha JMP134]
 gi|123624111|sp|Q46XA5|PRMA_RALEJ RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|72119965|gb|AAZ62228.1| LSU ribosomal protein L11P methyltransferase [Ralstonia eutropha
           JMP134]
          Length = 297

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 12/130 (9%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  + L  + K G+ +LD   GSG    VAKKL     +GI++  + +
Sbjct: 145 GTGSHPTTR---LCMQWLEQNLKAGETVLDYGCGSGILAIVAKKLGAGDTLGIDIDPNAV 201

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + +       Q   +  L     +      A   LV   ++     L      +SA V A
Sbjct: 202 EASRYNAERNQVQADFALPESVSE------ATYDLVVANIL--SNPLKLMAAMLSARVRA 253

Query: 319 DGTLISGTEL 328
            G LI    L
Sbjct: 254 GGRLILSGVL 263


>gi|329295748|ref|ZP_08253084.1| ribosomal protein L11 methyltransferase [Plautia stali symbiont]
          Length = 293

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 51/184 (27%), Gaps = 21/184 (11%)

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN-----------PMPNFRGR 143
           ++            H+      ML     W   D++                      G 
Sbjct: 22  LMDAGAVSVTFQDTHDNPVYEPMLGETRLWGDTDVIGLFDAETAMDDVVAELSQHPLLGS 81

Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---G 200
            F++  E +         + +  N+  ++         S   +P       + +     G
Sbjct: 82  GFRHKIEQI---EDKDWEREWMDNFHPMRFGERLWICPSWRDVPDPDAVNVMLDPGLAFG 138

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYID 259
              HPT    +L    L      G  ++D   GSG     A KL     IGI++    I 
Sbjct: 139 TGTHPTT---SLCLSWLDGLDLQGKTVIDFGCGSGILAIAALKLGAAQAIGIDIDPQAIQ 195

Query: 260 IATK 263
            +  
Sbjct: 196 ASRD 199


>gi|261403019|ref|YP_003247243.1| Methyltransferase type 11 [Methanocaldococcus vulcanius M7]
 gi|261370012|gb|ACX72761.1| Methyltransferase type 11 [Methanocaldococcus vulcanius M7]
          Length = 280

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 27/97 (27%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
            IN     +FE   KII G++  V++    +  D++  DPP    L G LY         
Sbjct: 164 KINPYSRELFEKGIKIILGDAFDVIKNFNDEEFDVVVHDPP-RFSLAGHLY--------- 213

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
                            +  +     RVLKP G L+ 
Sbjct: 214 -----------------SEEFYKEIFRVLKPGGRLFH 233


>gi|190150016|ref|YP_001968541.1| methylation subunit, type III restriction-modification system
           [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|189915147|gb|ACE61399.1| putative methylation subunit, type III restriction-modification
           system [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
          Length = 960

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 59/191 (30%), Gaps = 18/191 (9%)

Query: 92  CRRVLKPNGTLWVIGS---YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
                  +G +  IG         +   +L +         ++  +      + R  + +
Sbjct: 560 FYPFYVKDGKIIGIGDIPDDDFHPKTANVLLDDGVI----AIYPLNEDGNEKKWRYARQS 615

Query: 149 HETLIWA---SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
            E ++          +    FN D     +  +  + D         + +   +  K   
Sbjct: 616 VEKILDKLEAKSGRSSIQIIFNKDTGVMRSLWIDPKYDASEYGTKVLQAVLGVEDAKNFS 675

Query: 206 TQKPEALLSRILVS--STKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDY 257
             K    +  I+ +   +   + +LD F GSGT+      L       R +I +E  + +
Sbjct: 676 YPKSIHTVKEIVSAQLGSNEDNFVLDYFAGSGTTAHAVINLNREDNGNRKYILVEQGEYF 735

Query: 258 IDIATKRIASV 268
             +   R+  V
Sbjct: 736 DTVLKPRVQKV 746



 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 43/143 (30%), Gaps = 18/143 (12%)

Query: 23  IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +I  ++   L  L     + V  I+ DPPYN   +  LY+                    
Sbjct: 402 LIHSDNFQALNLLQERYKEQVKCIYIDPPYNANSSEILYKNTFK--------------HS 447

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           A+ +     +   + +L    +  V         +G +L           +    NP   
Sbjct: 448 AWLSLMSNRIELGKNLLARESSQAVAIDEVEQELLGQLLSLTFTDWTKVALPIVHNPRGQ 507

Query: 140 FRGRRFQNAHETLIWASPSPKAK 162
            +G+     HE      P+   K
Sbjct: 508 -QGKNISYVHEYFYLIYPTDSEK 529


>gi|116334202|ref|YP_795729.1| adenine specific DNA methylase Mod [Lactobacillus brevis ATCC 367]
 gi|116099549|gb|ABJ64698.1| Adenine specific DNA methylase Mod [Lactobacillus brevis ATCC 367]
          Length = 283

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 9/77 (11%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVS--STKPGDIILDPFFGSGTSGAVAKKL---- 244
           G++RL   D + +    KP +L+  ++       P   ILD F GS T+     +L    
Sbjct: 6   GAKRLVELDLKDMFTNPKPTSLIKYLINIVGHEHPDITILDFFAGSSTTADAVMQLNAED 65

Query: 245 --RRSFIGIEM-KQDYI 258
              R FI +++ ++ Y 
Sbjct: 66  GGNRKFIMVQLPEKTYH 82


>gi|75910556|ref|YP_324852.1| hypothetical protein Ava_4359 [Anabaena variabilis ATCC 29413]
 gi|75704281|gb|ABA23957.1| hypothetical protein Ava_4359 [Anabaena variabilis ATCC 29413]
 gi|311977232|gb|ADQ20491.1| M.AvrII [Anabaena variabilis UW]
          Length = 425

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           PE + + I  +   PGD +LDPF G GT+   +     S I  E    + DIA  +  + 
Sbjct: 38  PEFVSACIREACLSPGDAVLDPFGGLGTTPVQSLLDGFSCIVCEANPYFADIAAAKCQAA 97

Query: 269 QPLGNIELTVLTGK 282
             +GN+E   +  K
Sbjct: 98  --VGNVEPDEIFSK 109


>gi|153810847|ref|ZP_01963515.1| hypothetical protein RUMOBE_01231 [Ruminococcus obeum ATCC 29174]
 gi|149833243|gb|EDM88325.1| hypothetical protein RUMOBE_01231 [Ruminococcus obeum ATCC 29174]
          Length = 184

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 22  KIIKGNSISVLEKLPAK-SVDLIFADPPYNLQLNGQL--YRPDHSLVDAVT 69
           K++  + +  L  L  + + D IF DPPYN  L  Q+  Y  D SL +  T
Sbjct: 94  KLLNMDVLQALRSLEGEEAFDCIFMDPPYNKDLERQVLEYLKDSSLANTDT 144


>gi|170769246|ref|ZP_02903699.1| putative RNA methylase family UPF0020 [Escherichia albertii
           TW07627]
 gi|170121898|gb|EDS90829.1| putative RNA methylase family UPF0020 [Escherichia albertii
           TW07627]
          Length = 702

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + ++ L     +  DLIF DPP         +     + DA     D       
Sbjct: 591 HRLIQADCLAWLRD-AKEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|54308958|ref|YP_129978.1| 23S rRNA m(2)G2445 methyltransferase [Photobacterium profundum SS9]
 gi|81828763|sp|Q6LRA0|RLML_PHOPR RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|46913388|emb|CAG20176.1| hypothetical N6-adenine-specific DNA methylase [Photobacterium
           profundum SS9]
          Length = 712

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 43/130 (33%), Gaps = 22/130 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + + I+ + +  L+++   + DLIF DPP         +     +        D     E
Sbjct: 598 QHEFIQADCLQWLQEVDD-TFDLIFIDPP--------TFSNSKRMKQTFDIQRDHIMLME 648

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                        +R+L+ +G +    +          L  L     N  +  K+ PM  
Sbjct: 649 -----------NLKRMLRTDGKIVFSNNKRQFKMDLEKLNELGLDAKN--ISDKTLPMDF 695

Query: 140 FRGRRFQNAH 149
            + +   N+ 
Sbjct: 696 AKNKHIHNSW 705


>gi|293391551|ref|ZP_06635885.1| ribosomal protein L11 methyltransferase [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952085|gb|EFE02204.1| ribosomal protein L11 methyltransferase [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 294

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 57/182 (31%), Gaps = 14/182 (7%)

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEK 202
            +A   +         + +  N+  ++         S   +P  +    + +     G  
Sbjct: 81  NHAAYKIEQIEDKDWEREWMDNFHPMQFGKRLWICPSWREVPDPNAVNVMLDPGLAFGTG 140

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYIDIA 261
            HPT    AL    L      G  ++D   GSG     A KL     +GI++    I  +
Sbjct: 141 THPTT---ALCLEWLDGLGLQGKTVIDFGCGSGILAIAALKLGAKSAVGIDIDPQAILAS 197

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ-PGQILTNAQGNISATVCADG 320
                + +  G  +   L      P      +V   ++  P + L      +   V  +G
Sbjct: 198 RN---NAEQNGVADRLQLCLSDERPSDLNADVVVANILAGPLKELYPVINQL---VKPNG 251

Query: 321 TL 322
            L
Sbjct: 252 DL 253


>gi|260890630|ref|ZP_05901893.1| putative type II R/M system [Leptotrichia hofstadii F0254]
 gi|260859675|gb|EEX74175.1| putative type II R/M system [Leptotrichia hofstadii F0254]
          Length = 126

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 27/49 (55%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +KP   L +I+   +K GD++LDPF G G+  + A    R+ I  ++  
Sbjct: 33  KKPAKELRKIIKEYSKEGDLLLDPFSGYGSFASEAVLENRNVISNDLNP 81


>gi|256375106|ref|YP_003098766.1| N-6 DNA methylase [Actinosynnema mirum DSM 43827]
 gi|255919409|gb|ACU34920.1| N-6 DNA methylase [Actinosynnema mirum DSM 43827]
          Length = 677

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 3/93 (3%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL--RRSFIGIEMKQDYIDIATK 263
              P  L +R++V  T+P   + DP  G+G     A +       +G E+      +A  
Sbjct: 140 AVTPREL-ARLMVDLTEPHGTVFDPACGTGALLRAAVRSEPGIRPVGQELDPSLAQVAIA 198

Query: 264 RIASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
           R+A      ++           P +  +++V  
Sbjct: 199 RLAFAAGEASVRSGDSLRNDAFPELVADVVVSN 231


>gi|192361804|ref|YP_001983201.1| ribosomal protein L11 methyltransferase [Cellvibrio japonicus
           Ueda107]
 gi|226710062|sp|B3PBH5|PRMA_CELJU RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|190687969|gb|ACE85647.1| ribosomal protein L11 methyltransferase [Cellvibrio japonicus
           Ueda107]
          Length = 294

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 9/103 (8%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL----HPTQKPEALLSR 215
             + +  NY A++         S W  P       L    G       HPT     L  +
Sbjct: 94  WEREWMSNYHAIRCGERLWICPS-WQEPPEPDKINLMLDPGLAFGTGTHPTTF---LCMQ 149

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDY 257
            +         ++D   GSG  G  A  L  R  +G+++    
Sbjct: 150 WIDQQDFTDLEVIDYGCGSGILGIAALLLGARKVVGVDIDPQA 192


>gi|320450210|ref|YP_004202306.1| hypothetical protein TSC_c11370 [Thermus scotoductus SA-01]
 gi|320150379|gb|ADW21757.1| conserved hypothetical protein [Thermus scotoductus SA-01]
          Length = 317

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 13/75 (17%)

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
             WL P  +  E L             P+ +   ++   T+ G++++DP  G GT    A
Sbjct: 122 PVWLFPPETWKEAL-------------PQGVARALVGLYTERGELVVDPMAGYGTVVEAA 168

Query: 242 KKLRRSFIGIEMKQD 256
           + L R   G ++   
Sbjct: 169 RALGRRAWGGDIDPK 183


>gi|240102167|ref|YP_002958475.1| SAM-dependent methyltransferase [Thermococcus gammatolerans EJ3]
 gi|239909720|gb|ACS32611.1| SAM-dependent methyltransferase [Thermococcus gammatolerans EJ3]
          Length = 281

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 27/85 (31%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K ++I+G++  V+++   ++ D+I  DPP    L GQLY                     
Sbjct: 177 KIQVIQGDAFEVVKRFNDETFDVIIHDPP-RFSLAGQLY--------------------- 214

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWV 104
                +  +     R+LKP G L+ 
Sbjct: 215 -----SEEFYRELFRILKPGGRLFH 234


>gi|157369986|ref|YP_001477975.1| 23S rRNA m(2)G2445 methyltransferase [Serratia proteamaculans 568]
 gi|229560171|sp|A8GCK7|RLML_SERP5 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|157321750|gb|ABV40847.1| putative RNA methylase [Serratia proteamaculans 568]
          Length = 706

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 20/113 (17%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++I  + +S ++    +  D+IF DPP         +     + +   
Sbjct: 580 NLRVNGLTGKQHRLIHADCLSWMQN-ADEQFDVIFIDPP--------TFSNSKRMENTFD 630

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
              D  +  +             +R+L+ NGT+    +          L  L 
Sbjct: 631 VQRDHLALMQD-----------LKRLLRRNGTIMFSNNKRGFQMDMAGLSALG 672


>gi|269966803|ref|ZP_06180876.1| ribosomal protein L11 methyltransferase [Vibrio alginolyticus 40B]
 gi|269828470|gb|EEZ82731.1| ribosomal protein L11 methyltransferase [Vibrio alginolyticus 40B]
          Length = 295

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 54/160 (33%), Gaps = 21/160 (13%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  +K         S   IP       + +     G   HPT    AL    
Sbjct: 96  WEREWMENFHPMKFGERLWICPSWRDIPDPDAVNVMLDPGLAFGTGTHPTT---ALCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIAT---KR-------- 264
           L S    G  ++D   GSG     A KL     IGI++    +  +    +R        
Sbjct: 153 LESMDLSGKTVIDFGCGSGILAIAAIKLGAEKVIGIDIDPQALLASKDNAERNGVADKLE 212

Query: 265 --IASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPG 302
             +   QP G +   V+      P      ++ +GL++P 
Sbjct: 213 VYLPQNQPEGLVADVVVANILAGPLRELAPII-KGLVKPN 251


>gi|238897866|ref|YP_002923545.1| 23S rRNA m(2)G2445 methyltransferase, UPF0020 domain protein
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229465623|gb|ACQ67397.1| 23S rRNA m(2)G2445 methyltransferase, UPF0020 domain protein
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 715

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
             N N N +   + + I+ +  + L+    +  D IF DPP
Sbjct: 581 KKNLNTNGLTGSRHRFIQEDCFTWLQHQKDEQFDFIFLDPP 621


>gi|212550327|ref|YP_002308645.1| DNA modification methylase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549362|dbj|BAG84029.1| DNA modification methylase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 406

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 197 NKDGEKLHP--TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            +  +K+HP        L+  ++        +ILDPF GSG S   +        G ++ 
Sbjct: 19  RQGRQKIHPYPAMLHPLLVDYLIDQYANKNSVILDPFSGSGVSLLQSGLKGYPSYGFDIN 78

Query: 255 QDYIDIATK 263
              + I+  
Sbjct: 79  PFALLISKA 87


>gi|115373183|ref|ZP_01460484.1| hypothetical protein STIAU_2795 [Stigmatella aurantiaca DW4/3-1]
 gi|310817488|ref|YP_003949846.1| hypothetical protein STAUR_0210 [Stigmatella aurantiaca DW4/3-1]
 gi|115369784|gb|EAU68718.1| hypothetical protein STIAU_2795 [Stigmatella aurantiaca DW4/3-1]
 gi|309390560|gb|ADO68019.1| uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 231

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK-RIASVQPL 271
            R +   T P   ++DPF G GT  AVA  L    +G+E+ +     A   R+     L
Sbjct: 173 CRFIQEHT-PTRTVVDPFCGHGTVLAVANALGLDAVGVELSRKRARKARALRLTEALEL 230


>gi|72384717|gb|AAZ67650.1| methyltransferase putative [Haemophilus parasuis 29755]
          Length = 370

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 7/67 (10%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIE 252
           + + +    K    +  ++        IILD F GSGT+      L       R +I +E
Sbjct: 305 NKDDVFNAPKNITFIKTLVTLIDDKNQIILDYFAGSGTTAHAVINLNREDKGNRQYILVE 364

Query: 253 MKQDYID 259
              +Y D
Sbjct: 365 QG-EYFD 370



 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 33/99 (33%), Gaps = 17/99 (17%)

Query: 22  KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
            +I  ++   L  L A   + V  I+ DPPYN   +G +Y+  +                
Sbjct: 9   TLIHSDNFQALNLLQARYREQVKCIYIDPPYNTGGDGFIYKDGYQKSS------------ 56

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
             +       L   + +L   G ++     +    +  +
Sbjct: 57  --WATLIHNRLSLAKPLLNQAGVIFQSIDDNEQANLKLL 93


>gi|113460711|ref|YP_718777.1| ribosomal protein L11 methyltransferase [Haemophilus somnus 129PT]
 gi|122945185|sp|Q0I1Y6|PRMA_HAES1 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|112822754|gb|ABI24843.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [Haemophilus somnus 129PT]
          Length = 296

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 39/117 (33%), Gaps = 7/117 (5%)

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEK 202
           +N    +         + +  N+  +K         S   IP  +    + +     G  
Sbjct: 81  ENTAYKIEQIEDKDWEREWMDNFHPMKFGKRLWICPSWREIPDENAINVMLDPGLAFGTG 140

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYI 258
            HPT    AL    L S    G  ++D   GSG     A KL     +GI++    I
Sbjct: 141 THPTT---ALCLEWLDSLDLTGKTVIDFGCGSGILAIAALKLGAKSAVGIDIDPQAI 194


>gi|330830946|ref|YP_004393898.1| ribosomal protein L11 methyltransferase [Aeromonas veronii B565]
 gi|328806082|gb|AEB51281.1| Ribosomal protein L11 methyltransferase [Aeromonas veronii B565]
          Length = 292

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 7/108 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  ++  ++         S   +P       + +     G   HPT    AL  + 
Sbjct: 93  WVREWMDHFHPMQFGERLWICPSWRDVPNPDAVNVMLDPGLAFGTGTHPTT---ALCLQW 149

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           L      G  ++D   GSG  G  A KL     IGI++    I  +  
Sbjct: 150 LDGLDLAGKTVVDFGCGSGILGIAALKLGAARVIGIDIDPQAIQASRD 197


>gi|117620314|ref|YP_857842.1| ribosomal protein L11 methyltransferase [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|166223392|sp|A0KNJ1|PRMA_AERHH RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|117561721|gb|ABK38669.1| ribosomal protein L11 methyltransferase [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 292

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 7/108 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  ++  ++         S   +P       + +     G   HPT    AL  + 
Sbjct: 93  WVREWMDHFHPMQFGERLWICPSWRDVPNPDAVNVMLDPGLAFGTGTHPTT---ALCLQW 149

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           L      G  ++D   GSG  G  A KL     IGI++    I  +  
Sbjct: 150 LDGLDLAGKTVVDFGCGSGILGIAALKLGAARVIGIDIDPQAIQASRD 197


>gi|262392969|ref|YP_003284823.1| ribosomal protein L11 methyltransferase [Vibrio sp. Ex25]
 gi|262336563|gb|ACY50358.1| ribosomal protein L11 methyltransferase [Vibrio sp. Ex25]
          Length = 295

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 54/159 (33%), Gaps = 21/159 (13%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  +K         S   IP       + +     G   HPT    AL    
Sbjct: 96  WEREWMENFHPMKFGERLWICPSWRDIPDPDAVNVMLDPGLAFGTGTHPTT---ALCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIAT---KR-------- 264
           L S    G  ++D   GSG     A KL     IGI++    +  +    +R        
Sbjct: 153 LESMDLSGKTVIDFGCGSGILAIAAIKLGAEKVIGIDIDPQALLASKDNAERNGVADKLE 212

Query: 265 --IASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP 301
             +   QP G I   V+      P      ++ +GL++P
Sbjct: 213 VYLPQNQPEGLIADVVVANILAGPLRELAPII-KGLVKP 250


>gi|218439953|ref|YP_002378282.1| site-specific DNA-methyltransferase (cytosine-specific) [Cyanothece
           sp. PCC 7424]
 gi|218172681|gb|ACK71414.1| site-specific DNA-methyltransferase (cytosine-specific) [Cyanothece
           sp. PCC 7424]
          Length = 477

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 21/42 (50%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           L+  +L         ILDPF GSGT+   A +   +  GIE+
Sbjct: 72  LVEYLLKKYGVDQGKILDPFAGSGTALFAASQSGLNADGIEL 113


>gi|91228891|ref|ZP_01262793.1| ribosomal protein L11 methyltransferase [Vibrio alginolyticus
           12G01]
 gi|91187556|gb|EAS73886.1| ribosomal protein L11 methyltransferase [Vibrio alginolyticus
           12G01]
          Length = 295

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 54/160 (33%), Gaps = 21/160 (13%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  +K         S   IP       + +     G   HPT    AL    
Sbjct: 96  WEREWMENFHPMKFGERLWICPSWRDIPDPDAVNVMLDPGLAFGTGTHPTT---ALCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIAT---KR-------- 264
           L S    G  ++D   GSG     A KL     IGI++    +  +    +R        
Sbjct: 153 LESMDLSGKTVIDFGCGSGILAIAAIKLGAEKVIGIDIDPQALLASKDNAERNGVADKLE 212

Query: 265 --IASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPG 302
             +   QP G +   V+      P      ++ +GL++P 
Sbjct: 213 VYLPQNQPEGLVADVVVANILAGPLRELAPII-KGLVKPN 251


>gi|256019214|ref|ZP_05433079.1| site-specific DNA-methyltransferase, component of type III
           restriction-modification system [Shigella sp. D9]
 gi|332280320|ref|ZP_08392733.1| site-specific DNA-methyltransferase [Shigella sp. D9]
 gi|332102672|gb|EGJ06018.1| site-specific DNA-methyltransferase [Shigella sp. D9]
          Length = 182

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLN 54
           K+ +I+G+++ VL+ L    A  V LI+ DPPYN   +
Sbjct: 93  KNLMIEGDNLEVLKLLQKSYAGKVKLIYIDPPYNTGKD 130


>gi|149912153|ref|ZP_01900738.1| putative oxidoreductase [Moritella sp. PE36]
 gi|149804774|gb|EDM64818.1| putative oxidoreductase [Moritella sp. PE36]
          Length = 710

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 45/136 (33%), Gaps = 22/136 (16%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N+I   K ++++ + ++ L +   K  DLIF DPP         +     + D+     D
Sbjct: 591 NNISMRKHEVVQADCLAWLARCEDK-FDLIFIDPP--------TFSNSKRMEDSFDVERD 641

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
               F         WL     +L   G +    +  N       L+ L     N  +  K
Sbjct: 642 HIQLF--------TWLEN---ILSARGEIIFSNNKRNFKLDFEGLEKLGLKATN--ITEK 688

Query: 134 SNPMPNFRGRRFQNAH 149
           +      R +   N  
Sbjct: 689 NRSKDFARNKNISNCW 704


>gi|68249879|ref|YP_248991.1| hypothetical protein NTHI1522 [Haemophilus influenzae 86-028NP]
 gi|68058078|gb|AAX88331.1| hypothetical protein NTHI1522 [Haemophilus influenzae 86-028NP]
          Length = 319

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           L   +    +  G  ILDPF G    G VA KL R++IG++++ + I+
Sbjct: 225 LCEILYSWFSPKGCQILDPFAGGSVRGIVASKLNRNYIGVDLRAEQIE 272


>gi|296329491|ref|ZP_06871978.1| putative methyltransferase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305674815|ref|YP_003866487.1| putative methyltransferase [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296153373|gb|EFG94235.1| putative methyltransferase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305413059|gb|ADM38178.1| putative methyltransferase [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 261

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 18/28 (64%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADP 47
           + ++  G+    +++LP  SVD+++ DP
Sbjct: 155 RIQVKNGDCFEYIKQLPDNSVDVVYFDP 182


>gi|13358040|ref|NP_078314.1| adenine specific DNA methyltransferase [Ureaplasma parvum serovar 3
           str. ATCC 700970]
 gi|170762184|ref|YP_001752561.1| DNA methylase [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|11356738|pir||A82886 adenine specific DNA methyltransferase UU477 [imported] -
           Ureaplasma urealyticum
 gi|6899472|gb|AAF30889.1|AE002144_3 adenine specific DNA methyltransferase [Ureaplasma parvum serovar 3
           str. ATCC 700970]
 gi|168827761|gb|ACA33023.1| DNA methylase [Ureaplasma parvum serovar 3 str. ATCC 27815]
          Length = 360

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 8/86 (9%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL--- 244
           I +                 KP  L+  +L   +     +LD F GSGT+G    +L   
Sbjct: 186 IWTKDGNNEVDSLNIDFQNPKPIQLIMHLLDLHSNKNARVLDFFAGSGTTGHAVLELNKE 245

Query: 245 ---RRSFIGIEMKQDYI--DIATKRI 265
               R+F  I   ++ I  ++  +R+
Sbjct: 246 DGGNRTFTLITNNENQIGTNVCYERL 271


>gi|332799808|ref|YP_004461307.1| DNA methylase N-4/N-6 domain-containing protein [Tepidanaerobacter
           sp. Re1]
 gi|332697543|gb|AEE92000.1| DNA methylase N-4/N-6 domain protein [Tepidanaerobacter sp. Re1]
          Length = 849

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 2/86 (2%)

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
            P+P    +   Y      + D      +   +  G       +    H T+ P   + R
Sbjct: 37  CPNPFIGEFIEKYGTSYDESTDEYNVEPYTADVSEGKNDPIY-NAHSYH-TKVPHKAIMR 94

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVA 241
            ++  TKPGDI+ D F G+G +G  A
Sbjct: 95  YILHYTKPGDIVFDGFCGTGMTGVAA 120



 Score = 43.8 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 8/85 (9%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD--------K 74
           II  +S + L+ +P+ S+D IF DPP+   L              V  + +        +
Sbjct: 443 IINCSSSTDLKNIPSNSIDYIFTDPPFGANLMYSELNFLWEAWLKVFTNNESEAIINKTQ 502

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPN 99
                 Y            R+LKP 
Sbjct: 503 GKGLVEYQRIMERCFKEMHRILKPG 527


>gi|170717872|ref|YP_001784928.1| ribosomal protein L11 methyltransferase [Haemophilus somnus 2336]
 gi|189037697|sp|B0UV84|PRMA_HAES2 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|168826001|gb|ACA31372.1| ribosomal protein L11 methyltransferase [Haemophilus somnus 2336]
          Length = 296

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 39/117 (33%), Gaps = 7/117 (5%)

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEK 202
           +N    +         + +  N+  +K         S   IP  +    + +     G  
Sbjct: 81  ENTAYKIEQIEDKDWEREWMDNFHPMKFGKRLWICPSWREIPDENAINVMLDPGLAFGTG 140

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYI 258
            HPT    AL    L S    G  ++D   GSG     A KL     +GI++    I
Sbjct: 141 THPTT---ALCLEWLDSLDLTGKTVIDFGCGSGILAIAALKLGAKSAVGIDIDPQAI 194


>gi|300703018|ref|YP_003744620.1| ribosomal protein l11 methyltransferase [Ralstonia solanacearum
           CFBP2957]
 gi|299070681|emb|CBJ41976.1| Ribosomal protein L11 methyltransferase [Ralstonia solanacearum
           CFBP2957]
          Length = 298

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 12/130 (9%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L    L    +PG+  LD   GSG    VAKKL     +GI++  + +
Sbjct: 145 GTGSHPTTR---LCMEWLEQHVQPGERALDYGCGSGILAIVAKKLGAGETVGIDIDPNAV 201

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + +  R  + +   N      +     P   F+L+V   L  P   L      + A V  
Sbjct: 202 EAS--RYNAER---NRVEAGFSLPDDAPEGTFDLVVANILSNP---LKLMAAMLCARVRP 253

Query: 319 DGTLISGTEL 328
            G L+    L
Sbjct: 254 GGRLVLSGVL 263


>gi|293396737|ref|ZP_06641013.1| N6-adenine-specific DNA methytransferase [Serratia odorifera DSM
           4582]
 gi|291421001|gb|EFE94254.1| N6-adenine-specific DNA methytransferase [Serratia odorifera DSM
           4582]
          Length = 718

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 20/113 (17%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++I+ + +S L     +  D+IF DPP         +     + +   
Sbjct: 592 NLRANGLTGRQHRLIQADCLSWLHN-ADEQFDVIFIDPP--------TFSNSKRMENTFD 642

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
              D             A +   +R+L+ NGT+    +          LQ L 
Sbjct: 643 VQRDHL-----------ALMKDLKRLLRRNGTIMFSNNKRGFQMDQAGLQALG 684


>gi|220907289|ref|YP_002482600.1| hypothetical protein Cyan7425_1872 [Cyanothece sp. PCC 7425]
 gi|219863900|gb|ACL44239.1| conserved hypothetical protein [Cyanothece sp. PCC 7425]
          Length = 433

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 19/47 (40%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           P  +   +          +LDPF G+GT+    +K     +GIE   
Sbjct: 35  PHLVQDYLHKFGIGEDQQVLDPFCGTGTTVVECQKQGIPAVGIEANP 81



 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 6/28 (21%), Positives = 15/28 (53%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY 49
           ++   ++  +L  L  +++D +   PPY
Sbjct: 223 RMYPNDARQILPILAPQTIDAVITSPPY 250


>gi|39995555|ref|NP_951506.1| ribosomal protein L11 methyltransferase [Geobacter sulfurreducens
           PCA]
 gi|60390515|sp|Q74G05|PRMA_GEOSL RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|39982318|gb|AAR33779.1| ribosomal protein L11 methyltransferase [Geobacter sulfurreducens
           PCA]
 gi|298504561|gb|ADI83284.1| ribosomal protein L11 methyltransferase [Geobacter sulfurreducens
           KN400]
          Length = 299

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 12/130 (9%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L    L +  +P D +LD   GSG     A +L  R  IG ++  D +
Sbjct: 145 GTGTHPTTR---LCLEALETLGRP-DRVLDVGTGSGILAIAAVRLGARQVIGTDIDPDAV 200

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
            +A         L  +E+ ++T         F++++   ++   + L    G+++A V A
Sbjct: 201 IVA----GENCALNGVEVELVTTPLALIPGRFDVVL-ANIL--AEDLVRMAGDLAAKVAA 253

Query: 319 DGTLISGTEL 328
            G LI    L
Sbjct: 254 GGHLILSGIL 263


>gi|297581756|ref|ZP_06943678.1| ribosomal protein L11 methyltransferase [Vibrio cholerae RC385]
 gi|297534163|gb|EFH73002.1| ribosomal protein L11 methyltransferase [Vibrio cholerae RC385]
          Length = 295

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 54/159 (33%), Gaps = 21/159 (13%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P       + +     G   HPT    AL    
Sbjct: 96  WEREWMDNFHPMQFGRRLWICPSWREVPDPQAVNVMLDPGLAFGTGTHPTT---ALCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK---R-------- 264
           L +    G  ++D   GSG     A KL     IGI++    +  +     R        
Sbjct: 153 LDNLDLSGKTVIDFGCGSGILAIAAIKLGAAKVIGIDIDPQALLASKDNAARNGVEDQIE 212

Query: 265 --IASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP 301
             +   QP G +   V+      P    + ++ +GL++P
Sbjct: 213 VYLPKDQPEGLVADVVVANILAGPLRELSPII-KGLLKP 250


>gi|167841402|ref|ZP_02468086.1| gp56 [Burkholderia thailandensis MSMB43]
          Length = 264

 Score = 45.7 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 40/134 (29%), Gaps = 14/134 (10%)

Query: 18  EWKDKIIKGNSISVLE-KLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
           +W D    G+   ++   +     V  I   PPY    +             V     + 
Sbjct: 3   DWIDHCHFGDCRELMRVMIADGVKVQTIVTSPPYWGLRDY-----------GVDGQIGRE 51

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLW-VIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
           S+   +           R++L  +GT W  +G  +   R G      +    N  V    
Sbjct: 52  STLREFIDTLVEVFDLARQLLADDGTAWVNMGDSYAGSRGGGAPSVTSTLAGNGHVGGGP 111

Query: 135 NPMPNFRGRRFQNA 148
                  GRR  +A
Sbjct: 112 KLRGITAGRRRDDA 125


>gi|71276099|ref|ZP_00652380.1| DNA methylase [Xylella fastidiosa Dixon]
 gi|71901654|ref|ZP_00683732.1| DNA methylase [Xylella fastidiosa Ann-1]
 gi|170730458|ref|YP_001775891.1| DNA methylase [Xylella fastidiosa M12]
 gi|71163182|gb|EAO12903.1| DNA methylase [Xylella fastidiosa Dixon]
 gi|71728598|gb|EAO30751.1| DNA methylase [Xylella fastidiosa Ann-1]
 gi|167965251|gb|ACA12261.1| DNA methylase [Xylella fastidiosa M12]
          Length = 42

 Score = 45.7 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQ-DYI 258
           PF GSGT+G  A +    FIG+EM +  Y+
Sbjct: 13  PFTGSGTTGVAALRAGHRFIGMEMSRFKYV 42


>gi|307253729|ref|ZP_07535591.1| Type III restriction-modification system methyltransferase
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306858795|gb|EFM90846.1| Type III restriction-modification system methyltransferase
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
          Length = 324

 Score = 45.7 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 20/43 (46%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +    KP  +LS  +   T   DIILD F GSG++     +  
Sbjct: 214 VFNNPKPLPMLSDFIRWFTGRADIILDFFSGSGSTAHAILETN 256


>gi|307250041|ref|ZP_07532006.1| Type III restriction-modification system methyltransferase
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306857926|gb|EFM90017.1| Type III restriction-modification system methyltransferase
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
          Length = 320

 Score = 45.7 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 20/43 (46%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +    KP  +LS  +   T   DIILD F GSG++     +  
Sbjct: 208 VFNNPKPLPMLSDFIRWFTGRADIILDFFSGSGSTAHAILETN 250


>gi|303251189|ref|ZP_07337368.1| type III restriction-modification system methyltransferase
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|302649923|gb|EFL80100.1| type III restriction-modification system methyltransferase
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
          Length = 448

 Score = 45.7 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 20/43 (46%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +    KP  +LS  +   T   DIILD F GSG++     +  
Sbjct: 208 VFNNPKPLPMLSDFIRWFTGRADIILDFFSGSGSTAHAILETN 250


>gi|166365753|ref|YP_001658026.1| hypothetical protein MAE_30120 [Microcystis aeruginosa NIES-843]
 gi|166088126|dbj|BAG02834.1| unknown protein [Microcystis aeruginosa NIES-843]
          Length = 433

 Score = 45.7 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 211 ALLSRILVSSTKPGDIIL-DPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
            L+  +          +L DPF G GT+   AKKL    IGIE+  
Sbjct: 53  ELVRFLCEYLECSSKTVLCDPFLGKGTTIIEAKKLGLFAIGIELNP 98



 Score = 36.9 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 1/28 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY 49
           K+  G+S   L     +++D +   PPY
Sbjct: 249 KVYLGDSTQ-LSSFVEETIDRVITSPPY 275


>gi|90410324|ref|ZP_01218340.1| hypothetical N6-adenine-specific DNA methylase [Photobacterium
           profundum 3TCK]
 gi|90328565|gb|EAS44849.1| hypothetical N6-adenine-specific DNA methylase [Photobacterium
           profundum 3TCK]
          Length = 712

 Score = 45.7 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 42/130 (32%), Gaps = 22/130 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + + I+ + +  L+++   + DLIF DPP         +     +        D     E
Sbjct: 598 QHEFIQADCLQWLQEVDD-TFDLIFIDPP--------TFSNSKRMKQTFDIQRDHIMLME 648

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                        +R+L+ +G +    +          L  L     N  +  K+ PM  
Sbjct: 649 -----------NLKRMLRTDGKIVFSNNKRQFKMDLEKLNELGLDAKN--ISDKTLPMDF 695

Query: 140 FRGRRFQNAH 149
            + +   N  
Sbjct: 696 AKNKHIHNCW 705


>gi|307254642|ref|ZP_07536471.1| Type III restriction-modification system methyltransferase
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306862387|gb|EFM94352.1| Type III restriction-modification system methyltransferase
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
          Length = 130

 Score = 45.7 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 17  FEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN 54
            + ++  I+G ++ VL+ L      S+ +I+ DPPYN   +
Sbjct: 63  EQTQNIFIEGENLEVLKALQKSYFNSIKMIYIDPPYNTGND 103


>gi|304414236|ref|ZP_07395604.1| methylase for 50S ribosomal subunit protein L11 [Candidatus
           Regiella insecticola LSR1]
 gi|304283450|gb|EFL91846.1| methylase for 50S ribosomal subunit protein L11 [Candidatus
           Regiella insecticola LSR1]
          Length = 330

 Score = 45.7 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 62/174 (35%), Gaps = 14/174 (8%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  ++  +          S   +P  +    + +     G   HPT    AL  + 
Sbjct: 130 WQREWMEHFHPVCFGQRLWICPSWREVPDPTAVNVMLDPGLAFGTGTHPTT---ALCLQW 186

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  I+D   GSG     A KL     IGI++    I  +     +VQ  G  E
Sbjct: 187 LDSLDLVGKTIIDFGCGSGILAIAALKLGAAHAIGIDIDAQAIQASRD---NVQRNGVSE 243

Query: 276 LTVLTGKRTEP-RVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTEL 328
              L      P  +A +++V   L  P + L      IS  V  +G+L     L
Sbjct: 244 NLDLYRPEDLPTDIAADVVVANILAGPLRELALP---ISKLVKNNGSLALSGIL 294


>gi|288905527|ref|YP_003430749.1| hypothetical protein GALLO_1328 [Streptococcus gallolyticus UCN34]
 gi|288732253|emb|CBI13820.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34]
          Length = 253

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 13/95 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K    ++I+ ++ LP KS D+++ DP +             S   + + + D    F   
Sbjct: 151 KTYCADNITYMKSLPDKSFDVVYCDPMF-------------SDRISESKNLDGLRQFTNL 197

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
              +  +L   +RV + +  +          R G 
Sbjct: 198 SPLSDEFLREAKRVARKSLIIKAHFRDDVFERFGF 232


>gi|221369904|ref|YP_002521000.1| DNA methylase N-4/N-6 [Rhodobacter sphaeroides KD131]
 gi|221162956|gb|ACM03927.1| DNA methylase N-4/N-6 [Rhodobacter sphaeroides KD131]
          Length = 297

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 46/138 (33%), Gaps = 21/138 (15%)

Query: 21  DKIIKGNSI--SVLEKLPAKSVD----LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
            ++I G+S    V+ +L     D    L+  DPPY ++ +        +   A       
Sbjct: 175 HRLICGDSTAADVVGRLLG---DVGPLLMVTDPPYGVEYD----PSWRNQAGAAKTKRTG 227

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
               +    +  AW       L P    +V     +   +   L    F I + I+W K 
Sbjct: 228 RVLNDDRADWREAW------ALFPGDVAYVWHGALHAATVADSLVAAGFAIRSQIIWAKD 281

Query: 135 NPMPNFRGRRFQNAHETL 152
             + +     +Q  HE  
Sbjct: 282 RLVLSRGDYHWQ--HEPC 297


>gi|304372979|ref|YP_003856188.1| adenine DNA methyltransferase subunit [Mycoplasma hyorhinis HUB-1]
 gi|304309170|gb|ADM21650.1| adenine DNA methyltransferase subunit [Mycoplasma hyorhinis HUB-1]
          Length = 403

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 45/122 (36%), Gaps = 9/122 (7%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN-KDGEKLHPTQKPEA 211
           I  S     +   FN    K        +         GS  LR+  + +      KP  
Sbjct: 195 IQNSKKQNPRSVVFNSTLNKLVENTDNHQQIQRASTSDGSLMLRSIFNFDSFFDFPKPVN 254

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYI--DIATK 263
           L+  I+         +LD F GSGT+G    +L       RSF+ +   ++ I  ++  +
Sbjct: 255 LIKYIIDLFPSKNTRVLDFFAGSGTTGQAVLELNKEDGGNRSFVLVTNNENNIGQNVTYE 314

Query: 264 RI 265
           R+
Sbjct: 315 RL 316


>gi|148827547|ref|YP_001292300.1| hypothetical protein CGSHiGG_04860 [Haemophilus influenzae PittGG]
 gi|319775724|ref|YP_004138212.1| hypothetical protein HICON_10670 [Haemophilus influenzae F3047]
 gi|319896738|ref|YP_004134931.1| hypothetical protein HIBPF03950 [Haemophilus influenzae F3031]
 gi|148718789|gb|ABQ99916.1| hypothetical protein CGSHiGG_04860 [Haemophilus influenzae PittGG]
 gi|317432240|emb|CBY80592.1| conserved hypothetical protein [Haemophilus influenzae F3031]
 gi|317450315|emb|CBY86531.1| conserved hypothetical protein [Haemophilus influenzae F3047]
          Length = 451

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           L   +    +  G  ILDPF G    G VA KL R++IG++++ + I+
Sbjct: 224 LCEILYSWFSPKGCQILDPFAGGSVRGIVASKLNRNYIGVDLRAEQIE 271


>gi|320536754|ref|ZP_08036758.1| hypothetical protein HMPREF9554_01489 [Treponema phagedenis F0421]
 gi|320146399|gb|EFW38011.1| hypothetical protein HMPREF9554_01489 [Treponema phagedenis F0421]
          Length = 53

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 24/48 (50%)

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278
           F G G  G  +  L+R FIGIE+K+ Y   A K + + +     E+  
Sbjct: 6   FAGIGIEGYESILLKRKFIGIELKESYYKQACKNLKAAETHVKSEMLF 53


>gi|284929200|ref|YP_003421722.1| RNA methyltransferase, RsmD family [cyanobacterium UCYN-A]
 gi|284809644|gb|ADB95341.1| RNA methyltransferase, RsmD family [cyanobacterium UCYN-A]
          Length = 181

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
             N L I+ ++ S      K+IKG+++ +L  L  +  D I+ DPPY   L
Sbjct: 77  NTNWLKISSSEKSF-----KVIKGDALRILNSLEEQQFDFIYFDPPYRSNL 122


>gi|261868733|ref|YP_003256655.1| ribosomal protein L11 methyltransferase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261414065|gb|ACX83436.1| ribosomal protein L11 methyltransferase [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 294

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 57/186 (30%), Gaps = 14/186 (7%)

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD-- 199
                +A   +         + +  N+  ++         S   +P       + +    
Sbjct: 77  KYLDNHAAYKIEQIEDKDWEREWMDNFHPMQFGKRLWICPSWREVPDPKAVNVMLDPGLA 136

Query: 200 -GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDY 257
            G   HPT    AL    L      G  ++D   GSG     A KL     +GI++    
Sbjct: 137 FGTGTHPTT---ALCLEWLDGLGLQGKTVIDFGCGSGILAIAALKLGAKSAVGIDIDPQA 193

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ-PGQILTNAQGNISATV 316
           I  +     + +  G  +   L      P      +V   ++  P + L      IS  V
Sbjct: 194 ILASRN---NAEQNGVADRLQLCLSDERPSDLNADVVVANILAGPLKELYPV---ISQLV 247

Query: 317 CADGTL 322
             +G L
Sbjct: 248 KPNGDL 253


>gi|255089364|ref|XP_002506604.1| DNA methyltransferase [Micromonas sp. RCC299]
 gi|226521876|gb|ACO67862.1| DNA methyltransferase [Micromonas sp. RCC299]
          Length = 563

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 39/106 (36%), Gaps = 5/106 (4%)

Query: 180 MRSDWLIPICSGSE-RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
           MR  W     S      R   G   +P     A   RIL     PG+ +LDPF G GTS 
Sbjct: 81  MRVQWNHGYPSTPRGYPRTTHGFHEYPAGMQAAAADRILDVL--PGNSLLDPFAGGGTSL 138

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            V     R   G+++      +AT R  + +P    E       R 
Sbjct: 139 VVGMSKGRETFGVDVSPLAAFVATHR--TWRPAPGAEEETFEWMRA 182


>gi|308186290|ref|YP_003930421.1| UPF0020/UPF0064 protein ycbY [Pantoea vagans C9-1]
 gi|308056800|gb|ADO08972.1| UPF0020/UPF0064 protein ycbY [Pantoea vagans C9-1]
          Length = 704

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 49/140 (35%), Gaps = 22/140 (15%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++++ + +S L +   ++ DLIF DPP         +     + ++  
Sbjct: 579 NLRLNGLTGRQHRLMQADCLSWLNE-SDENFDLIFIDPP--------TFSNSKRMEESFD 629

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
              D               +   +R+L+  GT+    +          L+ L   +    
Sbjct: 630 VQRDHMM-----------LMRNLKRLLRRGGTIMFSNNKRGFKMDMDGLKALG--LQAQD 676

Query: 130 VWRKSNPMPNFRGRRFQNAH 149
           + +K+      R R+  N  
Sbjct: 677 ITQKTQSQDFARNRQIHNCW 696


>gi|196035235|ref|ZP_03102641.1| S-adenosyl-L-methionine-dependent methyltransferases family protein
           VrlL [Bacillus cereus W]
 gi|195992299|gb|EDX56261.1| S-adenosyl-L-methionine-dependent methyltransferases family protein
           VrlL [Bacillus cereus W]
          Length = 931

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 3/93 (3%)

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWL-IPICSGSERLRNKDGEKLHP--TQKPEAL 212
            P+P        ++  K  N +     ++   P  S     +N      H   T+ P   
Sbjct: 76  CPNPWINKCIEEWEQDKVKNYNRNSNEEYHREPFASDVSEGKNDAVYNAHSYHTKVPYKA 135

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +   L+  T PGDIILD F G+G +G  +++  
Sbjct: 136 IMHYLLHYTNPGDIILDGFSGTGMTGVASRRCG 168


>gi|260583113|ref|ZP_05850894.1| conserved hypothetical protein [Haemophilus influenzae NT127]
 gi|260093825|gb|EEW77732.1| conserved hypothetical protein [Haemophilus influenzae NT127]
          Length = 452

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           L   +    +  G  ILDPF G    G VA KL R++IG++++ + I+
Sbjct: 225 LCEILYSWFSPKGCQILDPFAGGSVRGIVASKLNRNYIGVDLRAEQIE 272


>gi|150403072|ref|YP_001330366.1| putative RNA methylase [Methanococcus maripaludis C7]
 gi|150034102|gb|ABR66215.1| putative RNA methylase [Methanococcus maripaludis C7]
          Length = 350

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 9/120 (7%)

Query: 203 LHP-TQKPEALLSRILVSST--KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
            HP    P+  L+R LV+ +  K G+I+LDPF G+G     A  L    IG ++ +  + 
Sbjct: 183 FHPGCIMPK--LARCLVNLSRVKEGEIVLDPFCGTGGFLIEAGFLGCKLIGSDIDEQMVK 240

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            A   + +     ++   V++ K+ + +     L E G+ +   I+T+    IS     D
Sbjct: 241 GAILNLNTY----DLSKQVISIKQNDAKNVSKYLGELGIEKIDGIVTDPPYGISTFKKGD 296


>gi|21675036|ref|NP_663101.1| hypothetical protein CT2227 [Chlorobium tepidum TLS]
 gi|21648272|gb|AAM73443.1| hypothetical protein CT2227 [Chlorobium tepidum TLS]
          Length = 55

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADP 47
           +    II G+S   +  LP +SV L+   P
Sbjct: 1  MKTTHTIIHGDSRQ-MNLLPDRSVHLVVTSP 30


>gi|313159329|gb|EFR58693.1| modification methylase BsoBI family protein [Alistipes sp. HGB5]
          Length = 499

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 211 ALLSRILVS-STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
            L+  +L     + GDI+ DPF GSGT+  V+     + +G ++  
Sbjct: 77  ELVRTLLKDFHLQKGDIVADPFMGSGTTALVSMFNGYNSLGFDILP 122


>gi|209554388|ref|YP_002284918.1| DNA methylase [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
 gi|209541889|gb|ACI60118.1| DNA methylase [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
          Length = 360

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 8/86 (9%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL--- 244
           I +                 KP  L+  +L   +     +LD F GSGT+G    +L   
Sbjct: 186 IWTKDGNNEVDSLNIDFQNPKPIQLIMHLLDLHSNKNARVLDFFAGSGTTGHAVLELNKE 245

Query: 245 ---RRSFIGIEMKQDYI--DIATKRI 265
               R+F  I   ++ I  ++  +R+
Sbjct: 246 DGGNRTFTLITNNENQIGTNVCYERL 271


>gi|88855497|ref|ZP_01130161.1| hypothetical protein A20C1_01701 [marine actinobacterium PHSC20C1]
 gi|88815404|gb|EAR25262.1| hypothetical protein A20C1_01701 [marine actinobacterium PHSC20C1]
          Length = 699

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 17/126 (13%)

Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL 305
           R  I   ++  Y  ++   +  V+P   ++  V     +EP +A   L+E+ L++PG  L
Sbjct: 578 RRMIATVIRDGYRKLSKNEV--VEPTDALQADVPEV--SEPSLA--ELIEQFLLKPGDFL 631

Query: 306 --TNAQGNISATVCADGTLISGTELGSIHRV-----GAKVSGSETCNGWNFWYFEKLGEL 358
              +    + A +  DGTL+       +H        A        +G++FW  +    L
Sbjct: 632 DPVDPNWEVDAAITDDGTLLIDG----VHEFDSLDEAAHHLEVTNMSGYDFWALQTDKGL 687

Query: 359 HSINTL 364
             ++ L
Sbjct: 688 IPLSDL 693


>gi|308189608|ref|YP_003922539.1| Type III site-specific deoxyribonuclease [Mycoplasma fermentans
           JER]
 gi|307624350|gb|ADN68655.1| putative Type III site-specific deoxyribonuclease [Mycoplasma
           fermentans JER]
          Length = 402

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 78/265 (29%), Gaps = 48/265 (18%)

Query: 48  PYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
           PY   L G+    + +L       + K +SFE +      +       +       +   
Sbjct: 49  PYISNLKGRQANTNFALTHEYILCYSKSNSFE-FQELEDKYATELMPQIYKERNKKIFKD 107

Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR--------------------RFQN 147
            +  F +   L+N N             P+  ++ R                    + +N
Sbjct: 108 TYGYFILQNRLENTNSKFNKQTRSNLYYPLYIYKDRNEYRVDVVKTEKTIAEIFPKKIKN 167

Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD---WLIPICSGSERLRNKDGEKL- 203
            ++ +         K     Y   +A    +  +     W         +L  K+G  L 
Sbjct: 168 IYDGVWRWEKEKVVKDNHDLYVKFEANEFTIWTKKRNNSWTPKSIIMGPKLNTKNGNDLL 227

Query: 204 --------------HPTQKPEALLSRILVS-STKPGDIILDPFFGSGTSGAVAKKLR--- 245
                           T K   L++ ++          ILD F GSGT+G    ++    
Sbjct: 228 ENICENIELDENTKFNTCKNIDLINYLINIKLNNKEARILDFFAGSGTTGHAILEMNKKD 287

Query: 246 ---RSFIGIEMKQDYI--DIATKRI 265
              R F  +   ++ +   I  +R+
Sbjct: 288 GGKRQFTLVTNDENNVGTKICYERL 312


>gi|304397103|ref|ZP_07378982.1| putative RNA methylase [Pantoea sp. aB]
 gi|304355252|gb|EFM19620.1| putative RNA methylase [Pantoea sp. aB]
          Length = 704

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 49/140 (35%), Gaps = 22/140 (15%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++++ + +S L +   ++ DLIF DPP         +     + ++  
Sbjct: 579 NLRLNGLTGRQHRLMQADCLSWLNE-SDENFDLIFIDPP--------TFSNSKRMEESFD 629

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
              D               +   +R+L+  GT+    +          L+ L   +    
Sbjct: 630 VQRDHMM-----------LMRNLKRLLRRGGTIMFSNNKRGFKMDMDGLKALG--LQAQD 676

Query: 130 VWRKSNPMPNFRGRRFQNAH 149
           + +K+      R R+  N  
Sbjct: 677 ITQKTQSQDFARNRQIHNCW 696


>gi|145631205|ref|ZP_01786979.1| predicted methyltransferase [Haemophilus influenzae R3021]
 gi|144983303|gb|EDJ90794.1| predicted methyltransferase [Haemophilus influenzae R3021]
          Length = 657

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
           N I   + K+I+ + +  LEK   +  DLIFADPP
Sbjct: 593 NDIEGKQHKLIQADCLQWLEKC-DRQFDLIFADPP 626


>gi|145629815|ref|ZP_01785609.1| hypothetical protein CGSHi22121_00882 [Haemophilus influenzae
           22.1-21]
 gi|144977961|gb|EDJ87749.1| hypothetical protein CGSHi22121_00882 [Haemophilus influenzae
           22.1-21]
          Length = 376

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           L   +    +  G  ILDPF G    G VA KL R++IG++++ + I+
Sbjct: 225 LCEILYSWFSPKGCQILDPFAGGSVRGIVASKLNRNYIGVDLRAEQIE 272


>gi|315127803|ref|YP_004069806.1| 50S ribosomal protein L11 methyltransferase [Pseudoalteromonas sp.
           SM9913]
 gi|315016317|gb|ADT69655.1| 50S ribosomal protein L11 methyltransferase [Pseudoalteromonas sp.
           SM9913]
          Length = 293

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 56/152 (36%), Gaps = 10/152 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++   +     S   IP       L +     G   H T    AL  + 
Sbjct: 95  WEREWMDNFHPIQFGEKLWICPSWRDIPDPDAVNVLLDPGLAFGTGTHATT---ALCLKW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG  G  A KL     IGI++    ++ +   + +    G  +
Sbjct: 152 LESQDLTGKTVVDFGCGSGILGIAAIKLGAERMIGIDIDPQALEAS---LDNANRNGVAD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTN 307
              +     +P    +++V   L QP + L +
Sbjct: 209 KLEVYLPENQPEFTADIVVANILAQPLRELHS 240


>gi|295695068|ref|YP_003588306.1| DNA methylase N-4/N-6 domain protein [Bacillus tusciae DSM 2912]
 gi|295410670|gb|ADG05162.1| DNA methylase N-4/N-6 domain protein [Bacillus tusciae DSM 2912]
          Length = 938

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           T+ P   + R ++  T+PGDI+ D F G+G +G  A+   
Sbjct: 125 TKVPHKAIMRYILHYTRPGDIVFDGFAGTGMTGVAAQLCG 164



 Score = 39.2 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 35/106 (33%), Gaps = 11/106 (10%)

Query: 35  LPAKSVDLIFADPPYNLQL---------NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           + + S+D IF DPP+   L            L    ++  +AV +   +      Y    
Sbjct: 505 IKSHSIDYIFTDPPFGANLMYSELNFLWEAWLKVFTNNRTEAVVNQT-QGKGLVEYQRLM 563

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
            A      RVLKP G    +   ++   +   +Q         I  
Sbjct: 564 EACFKEYYRVLKP-GRWMTVEFSNSQASVWNAIQEAIQRAGFVIAH 608


>gi|332158594|ref|YP_004423873.1| hypothetical protein PNA2_0953 [Pyrococcus sp. NA2]
 gi|331034057|gb|AEC51869.1| hypothetical protein PNA2_0953 [Pyrococcus sp. NA2]
          Length = 316

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 50/130 (38%), Gaps = 8/130 (6%)

Query: 141 RGRRFQNAHETLIWASP----SPKAKGYTFNYDALKAANEDVQMRSDWL-IPICSGSERL 195
           R  R +N    +            ++G+  N  +             W+ + +     + 
Sbjct: 77  RRERMRNCSYNIEGIDRLIGGIIHSQGFKVNLSSPDVVVRVYCGERLWIGVRVREFKGKE 136

Query: 196 RNKDGEKLHPTQKPEALLSRI---LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
            ++      P  +P AL  RI   +V+ T+    +LDPF G+G     A  +     GI+
Sbjct: 137 FDERKADRRPFSRPIALPPRIARAMVNLTRARRELLDPFMGTGGMLIEAGLMGLKVYGID 196

Query: 253 MKQDYIDIAT 262
           +++D ++ A 
Sbjct: 197 IREDMVEGAK 206


>gi|148656313|ref|YP_001276518.1| type 11 methyltransferase [Roseiflexus sp. RS-1]
 gi|148568423|gb|ABQ90568.1| Methyltransferase type 11 [Roseiflexus sp. RS-1]
          Length = 294

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 28/76 (36%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
             +  G+          LL  IL      G  +LD   G+GT   V        IGI+  
Sbjct: 39  FYDGSGQIRFAVLFAHYLLGDILPRHPVAGRRVLDLACGTGTLALVLADAGWQVIGIDRS 98

Query: 255 QDYIDIATKRIASVQP 270
              + IA  R  +V+P
Sbjct: 99  PAMLAIARNRAQTVEP 114


>gi|29830071|ref|NP_824705.1| cyclopropane fatty acid synthase [Streptomyces avermitilis MA-4680]
 gi|29607181|dbj|BAC71240.1| putative cyclopropane fatty acid synthase [Streptomyces avermitilis
           MA-4680]
          Length = 429

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 63/162 (38%), Gaps = 24/162 (14%)

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIASV 268
             L+SR L  +  PG  +LD   G G+     A++   S +GI + Q+    A KR+A  
Sbjct: 186 LELVSRKLGLT--PGQRLLDVGCGWGSMAIHAAREHGVSVVGITLSQEQAAYARKRVAD- 242

Query: 269 QPLGNIELTVLTGKRTEPRVAFNLLVERGL-IQPG-QILTNAQGNISATVCADGTLISGT 326
           + L +     +   R      ++ +   G+    G +   +   ++ A +  DG L++  
Sbjct: 243 EGLTDRVEIRVQDYRDVTDGPYDAISSIGMAEHVGAERYLDYARDLYALLKPDGRLLN-- 300

Query: 327 ELGSIHRVGAKVSGSETCNGWNF-------WYFEKLGELHSI 361
                H++  +    E+     +        Y    GEL  I
Sbjct: 301 -----HQIARRPQLDES----TYSVDEFIDAYVFPDGELAPI 333


>gi|222834217|gb|EEE72694.1| predicted protein [Populus trichocarpa]
          Length = 744

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 51/135 (37%), Gaps = 22/135 (16%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  + L ++ + G+ +LD   GSG    VAKKL     +GI++  + +
Sbjct: 141 GTGSHPTTR---LCMQWLEANVRAGETVLDYGCGSGILAIVAKKLGAGDTVGIDIDPNAV 197

Query: 259 DIA-----TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNIS 313
           D +       R+ +   L                 A   LV   ++     L      +S
Sbjct: 198 DASRYNAERNRVEASFALPESVSE-----------ATYDLVVANIL--SNPLKLMAAMLS 244

Query: 314 ATVCADGTLISGTEL 328
           A V   G LI    L
Sbjct: 245 ARVRPGGRLILSGVL 259


>gi|94311997|ref|YP_585207.1| ribosomal protein L11 methyltransferase [Cupriavidus metallidurans
           CH34]
 gi|166223434|sp|Q1LIT8|PRMA_RALME RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|93355849|gb|ABF09938.1| methylase for 50S ribosomal subunit protein L11 [Cupriavidus
           metallidurans CH34]
          Length = 304

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 51/135 (37%), Gaps = 22/135 (16%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  + L ++ + G+ +LD   GSG    VAKKL     +GI++  + +
Sbjct: 145 GTGSHPTTR---LCMQWLEANVRAGETVLDYGCGSGILAIVAKKLGAGDTVGIDIDPNAV 201

Query: 259 DIA-----TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNIS 313
           D +       R+ +   L                 A   LV   ++     L      +S
Sbjct: 202 DASRYNAERNRVEASFALPESVSE-----------ATYDLVVANIL--SNPLKLMAAMLS 248

Query: 314 ATVCADGTLISGTEL 328
           A V   G LI    L
Sbjct: 249 ARVRPGGRLILSGVL 263


>gi|325978517|ref|YP_004288233.1| hypothetical protein SGGBAA2069_c13170 [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|325178445|emb|CBZ48489.1| conserved hypothetical protein [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 249

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 11/82 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K    ++I+ ++ LP KS D+++ DP +           D        D   +F++    
Sbjct: 151 KTYCADNITYMKSLPDKSFDVVYCDPMF----------SDRISESKNLDGLRQFANPSPL 200

Query: 82  -DAFTRAWLLACRRVLKPNGTL 102
            D F R      R+ L      
Sbjct: 201 SDEFLREAKRMARKSLIIKAHF 222


>gi|307254640|ref|ZP_07536470.1| Type III restriction-modification system methyltransferase
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306862405|gb|EFM94369.1| Type III restriction-modification system methyltransferase
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
          Length = 480

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 20/43 (46%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           +    KP  +LS  +   T   DIILD F GSG++     +  
Sbjct: 241 VFNNPKPLPMLSDFIRWFTGRADIILDFFSGSGSTAHAILETN 283


>gi|306831613|ref|ZP_07464771.1| conserved hypothetical protein [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304426398|gb|EFM29512.1| conserved hypothetical protein [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 249

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 11/82 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           K    ++I+ ++ LP KS D+++ DP +           D        D   +F++    
Sbjct: 151 KTYCADNITYMKSLPDKSFDVVYCDPMF----------SDRISESKNLDGLRQFANPSPL 200

Query: 82  -DAFTRAWLLACRRVLKPNGTL 102
            D F R      R+ L      
Sbjct: 201 SDEFLREAKRMARKSLIIKAHF 222


>gi|119473197|ref|ZP_01614894.1| methylation of 50S ribosomal subunit protein L11 (ribosomal protein
           L11 methyltransferase) [Alteromonadales bacterium TW-7]
 gi|119444561|gb|EAW25876.1| methylation of 50S ribosomal subunit protein L11 (ribosomal protein
           L11 methyltransferase) [Alteromonadales bacterium TW-7]
          Length = 293

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 56/152 (36%), Gaps = 10/152 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++   +     S   IP       L +     G   H T    AL  + 
Sbjct: 95  WEREWMDNFHPIQFGEKLWICPSWRDIPDPDAVNVLLDPGLAFGTGTHATT---ALCLKW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG  G  A KL     IGI++    ++ +   + +    G  +
Sbjct: 152 LESQDLTGKTVVDFGCGSGILGIAAIKLGAERMIGIDIDPQALEAS---LDNANRNGVAD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTN 307
              +     +P    +++V   L QP + L +
Sbjct: 209 KLEVYLPENQPEFTADIVVANILAQPLRELHS 240


>gi|110636123|ref|YP_676331.1| putative RNA methylase [Mesorhizobium sp. BNC1]
 gi|110287107|gb|ABG65166.1| putative RNA methylase [Chelativorans sp. BNC1]
          Length = 495

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 23/46 (50%)

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           PG  +LDPF GSGT+       R    G ++    + IA  ++ ++
Sbjct: 116 PGQRVLDPFCGSGTTLVECAHSRAIGYGTDINPLAVYIAQAKLQAL 161


>gi|306820250|ref|ZP_07453891.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551704|gb|EFM39654.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 452

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 1/102 (0%)

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           ++   I  G++   +        T+  E L    +       DII D + G+GT G    
Sbjct: 266 NYFYDILLGNKFKISPFSFFQTNTKGAETLYKTAMEMIDGEKDIIFDLYSGTGTIGISLS 325

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
              +  IGIE+ ++ +++A +  A    + N+E      K  
Sbjct: 326 ARAKKVIGIEIVEEAVEMAREN-AQANNVKNVEFIAGDVKEE 366


>gi|242239087|ref|YP_002987268.1| 23S rRNA m(2)G2445 methyltransferase [Dickeya dadantii Ech703]
 gi|242131144|gb|ACS85446.1| putative RNA methylase [Dickeya dadantii Ech703]
          Length = 705

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 24/104 (23%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPA--KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
           N   N +   + ++I  + ++ +       +  DLIF DPP            +   +DA
Sbjct: 579 NLRLNGLTGRQHRLIHADCLAWMR---DTREQFDLIFIDPP---------TFSNSKRMDA 626

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
             D          + A  +      +R+L+P GT+    +    
Sbjct: 627 TFDVQ------RDHLALMKD----LKRILRPGGTIMFSNNKRGF 660


>gi|196044173|ref|ZP_03111409.1| S-adenosyl-L-methionine-dependent methyltransferases family protein
           VrlL [Bacillus cereus 03BB108]
 gi|196024812|gb|EDX63483.1| S-adenosyl-L-methionine-dependent methyltransferases family protein
           VrlL [Bacillus cereus 03BB108]
          Length = 931

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 3/91 (3%)

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLI-PICSGSERLRNKDGEKLHP--TQKPEAL 212
            P+P    +   ++  K          ++   P  S     +N      H   T+ P   
Sbjct: 76  CPNPWINEFIREWEREKVEKYGRDANEEYHKEPFASDVSEGKNDPIYNAHSYHTKVPYKA 135

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           + + L+  T+PGD+ILD F G+G +G  A +
Sbjct: 136 IIKFLLHYTEPGDVILDAFCGTGMTGVAAAR 166



 Score = 41.9 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 36/114 (31%), Gaps = 11/114 (9%)

Query: 35  LPAKSVDLIFADPPYNLQLNG-QLYRPDHSLVDAVTDSWD-------KFSSFEAYDAFTR 86
           +   S+D IF DPP+   +N  +L     S +  VT++         +      Y     
Sbjct: 498 IADNSIDYIFTDPPFGANINYSELNFIWESWLKVVTNNNSEAIINATQEKGITQYQDLME 557

Query: 87  AWLLACRRVLKPNGTL-WVIGSYHN--IFRIGTMLQNLNFWILNDIVWRKSNPM 137
                  RVLKP   +     +        I   +Q   F I N     K    
Sbjct: 558 DSFKNYYRVLKPGRWMTVEFSNPKASVWNAIQEAMQKAGFVIANVAALDKKQGS 611


>gi|159027576|emb|CAO86949.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 181

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 8/45 (17%)

Query: 17  FEWKD--------KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
             W++        + I+G+ ++ L  L  KS DLI+ DPPY   L
Sbjct: 78  ENWRNLATSHQQFQAIRGDVLTKLATLAGKSFDLIYFDPPYESGL 122


>gi|17548791|ref|NP_522131.1| hypothetical protein RS06032 [Ralstonia solanacearum GMI1000]
 gi|17431040|emb|CAD17721.1| hypothetical protein RSp0570 [Ralstonia solanacearum GMI1000]
          Length = 222

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 20  KDKIIKGNSISVL---EKLPAKSVDLIFADPPYNLQ 52
           + +++ G++         L  +  D++F DPPYN+ 
Sbjct: 187 RHRLLCGDATVAENYGRLLQGEPADMVFTDPPYNVN 222


>gi|323650440|gb|ADX97295.1| M1.EarI [Enterobacter aerogenes]
          Length = 414

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 5/112 (4%)

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
           +   NE   MR         GS         + +  +  + L+SR           ILDP
Sbjct: 1   MNQKNEKSFMRLQSTFSGGKGSPMHDWYPYLEGYSPEFVKCLISRF----APKAKTILDP 56

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
           F GSGT+  V+     +    E+      I   ++ ++  L   E T L  +
Sbjct: 57  FCGSGTTAIVSVLEGLNNYYCEVNPLCQYIIETKLIALT-LSEEEKTKLVNE 107


>gi|327393365|dbj|BAK10787.1| N6-Adenine-specific DNA methylase YcbY [Pantoea ananatis AJ13355]
          Length = 704

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 36/102 (35%), Gaps = 20/102 (19%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + +++  + +S L +   ++ DLIF DPP         +     + ++  
Sbjct: 579 NLRLNGLTGRQHRLLHADCLSWLNE-SDENFDLIFIDPP--------TFSNSKRMEESFD 629

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
              D               +   +R+L+  GT+    +    
Sbjct: 630 VQRDHMM-----------LMRNLKRLLRKGGTIMFSNNKRGF 660


>gi|291616937|ref|YP_003519679.1| YcbY [Pantoea ananatis LMG 20103]
 gi|291151967|gb|ADD76551.1| YcbY [Pantoea ananatis LMG 20103]
          Length = 704

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 36/102 (35%), Gaps = 20/102 (19%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + +++  + +S L +   ++ DLIF DPP         +     + ++  
Sbjct: 579 NLRLNGLTGRQHRLLHADCLSWLNE-SDENFDLIFIDPP--------TFSNSKRMEESFD 629

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
              D               +   +R+L+  GT+    +    
Sbjct: 630 VQRDHMM-----------LMRNLKRLLRKGGTIMFSNNKRGF 660


>gi|91791677|ref|YP_561328.1| DNA methylase N-4/N-6 [Shewanella denitrificans OS217]
 gi|91713679|gb|ABE53605.1| DNA methylase N-4/N-6 [Shewanella denitrificans OS217]
          Length = 599

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           +PT+     ++  + S TKPG  +LD F GSGT+G  A 
Sbjct: 31  YPTKISPEAIAVFIASHTKPGGTVLDTFGGSGTTGLAAL 69



 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 11/100 (11%)

Query: 34  KLPAKSVDLIFADPPYNL--------QLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
            LP   +D +F DPP+          Q+N        +    +  S  +    E Y    
Sbjct: 397 SLPDGCIDYVFTDPPFGDYIPYAELNQINELWLGSTTNRTQEIIVSKAQGKGVEQYSQMM 456

Query: 86  RAWLLACRRVLKPNG---TLWVIGSYHNIFRIGTMLQNLN 122
            +      RVLKP G    ++     +    +    Q   
Sbjct: 457 ASVFSEIERVLKPEGLVTVVFHSAKSNIWQALTNAYQKAG 496


>gi|113866396|ref|YP_724885.1| methyltransferase [Ralstonia eutropha H16]
 gi|113525172|emb|CAJ91517.1| Methyltransferase [Ralstonia eutropha H16]
          Length = 230

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 27/41 (65%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY 49
           + +NQ  +   + ++++G++ ++  +LP  S D++F DPP+
Sbjct: 123 LRDNQYRLDAAQVRVMQGDAFAIAAQLPDASFDVVFLDPPF 163


>gi|120597328|ref|YP_961902.1| ribosomal protein L11 methyltransferase [Shewanella sp. W3-18-1]
 gi|146294527|ref|YP_001184951.1| ribosomal protein L11 methyltransferase [Shewanella putrefaciens
           CN-32]
 gi|166223440|sp|A4YB19|PRMA_SHEPC RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|166223442|sp|A1RFA3|PRMA_SHESW RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|120557421|gb|ABM23348.1| LSU ribosomal protein L11P methyltransferase [Shewanella sp.
           W3-18-1]
 gi|145566217|gb|ABP77152.1| LSU ribosomal protein L11P methyltransferase [Shewanella
           putrefaciens CN-32]
 gi|319427892|gb|ADV55966.1| ribosomal protein L11 methyltransferase [Shewanella putrefaciens
           200]
          Length = 293

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 45/129 (34%), Gaps = 10/129 (7%)

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
            F G  F +  E +         + +  N+  ++  +      S   IP  +    + + 
Sbjct: 77  PFLGDNFSHKIEQI---EDKDWVREWMDNFHPIQFGSRLWICPSWREIPDPTAVNVILDP 133

Query: 199 D---GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMK 254
               G   HPT    AL    L S     + ++D   GSG     A KL  +   GI++ 
Sbjct: 134 GLAFGTGTHPTT---ALCLEWLDSLDLSNEEVIDFGCGSGILAVAALKLGAKKVTGIDID 190

Query: 255 QDYIDIATK 263
              ID +  
Sbjct: 191 YQAIDASRA 199


>gi|307941988|ref|ZP_07657340.1| methyltransferase type 11 [Roseibium sp. TrichSKD4]
 gi|307774778|gb|EFO33987.1| methyltransferase type 11 [Roseibium sp. TrichSKD4]
          Length = 282

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 31/66 (46%)

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           ++ +    G  +LD   G G++   A+       GIE+    ++ A +R+A ++P  + +
Sbjct: 57  VVTAHLPRGSKLLDIGCGFGSTVIAARNAGIDATGIEIAPFEVNFAQRRLARMRPQDDPQ 116

Query: 276 LTVLTG 281
           L    G
Sbjct: 117 LVFKQG 122


>gi|300113549|ref|YP_003760124.1| methyltransferase type 11 [Nitrosococcus watsonii C-113]
 gi|299539486|gb|ADJ27803.1| Methyltransferase type 11 [Nitrosococcus watsonii C-113]
          Length = 231

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 4/88 (4%)

Query: 214 SRILVSSTKPGDIILDPFFGSG--TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
            R++         ILD   G+G  T    ++      +G+E++++Y++IA ++I  +  L
Sbjct: 39  RRMVNLMPPNPSRILDLACGTGISTLAIASRYPNCQVVGVELREEYLEIARQKIQKL-GL 97

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLI 299
            NIEL +   +    +  F+  V    +
Sbjct: 98  KNIELVLSRAEDYHSKEPFD-CVNSSYL 124


>gi|288941338|ref|YP_003443578.1| DNA methylase N-4/N-6 domain-containing protein [Allochromatium
           vinosum DSM 180]
 gi|288896710|gb|ADC62546.1| DNA methylase N-4/N-6 domain protein [Allochromatium vinosum DSM
           180]
          Length = 396

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 21/56 (37%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           Q     +  IL         ++DPF GSGT    A     +  GIE+      +A 
Sbjct: 25  QFTPQFVDYILEEFATNASAVIDPFCGSGTVLLEAASRNIAGFGIELNPAAYAMAK 80


>gi|224457795|ref|ZP_03666268.1| adenine specific DNA methylase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254371242|ref|ZP_04987244.1| predicted protein [Francisella tularensis subsp. tularensis FSC033]
 gi|254875471|ref|ZP_05248181.1| predicted protein [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|151569482|gb|EDN35136.1| predicted protein [Francisella tularensis subsp. tularensis FSC033]
 gi|254841470|gb|EET19906.1| predicted protein [Francisella tularensis subsp. tularensis
           MA00-2987]
          Length = 186

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 9/74 (12%)

Query: 2   SQKNSLAINENQNSIFEWK------DKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQ 52
           ++ +   I E +  + + K      + +I+G++I  L+ L A     + +I+ DPPYN +
Sbjct: 79  AKADEPTIKELKAELEQSKDFDNTGNVVIRGDNIDTLKILRANYTNKIKMIYIDPPYNTK 138

Query: 53  LNGQLYRPDHSLVD 66
               +Y  +    +
Sbjct: 139 SENFIYNDNFKKNE 152


>gi|300938289|ref|ZP_07153054.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 21-1]
 gi|300456744|gb|EFK20237.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 21-1]
          Length = 522

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 212 LLSRILVSST-KPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYIDIATKR 264
           L + ++ S++    +IILD F GSGTSG    +L       R +I +E  +   ++   R
Sbjct: 241 LYNYLIGSASHNKNEIILDFFAGSGTSGHSVIELNRKDAGSRKYILVEQGEYAQNVTLSR 300

Query: 265 IASV 268
           +  V
Sbjct: 301 LRKV 304


>gi|188996130|ref|YP_001930381.1| Protein of unknown function methylase putative
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931197|gb|ACD65827.1| Protein of unknown function methylase putative
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 157

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 8   AINENQNSIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
            IN+ +  +   ++ K +  + +  L+  P +S D++FADPPY+ +   +L +  
Sbjct: 58  RINQIKEKLKNVENVKFVSKDVLKYLKDQPDESFDIVFADPPYDYKYYDKLIKGG 112



 Score = 38.0 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI-EMKQDYIDIATKRIASVQPLGNIE 275
           ++ S K  D  LD F G+G  G  A +     +   +++++ I+   +++ +V+ +  + 
Sbjct: 18  ILYSVKGKDF-LDLFAGTGQIGMTALEKGVKSVVFVDIERERINQIKEKLKNVENVKFVS 76

Query: 276 LTVLTGKRTEPRVAFN 291
             VL   + +P  +F+
Sbjct: 77  KDVLKYLKDQPDESFD 92


>gi|256425855|ref|YP_003126508.1| methyltransferase type 11 [Chitinophaga pinensis DSM 2588]
 gi|256040763|gb|ACU64307.1| Methyltransferase type 11 [Chitinophaga pinensis DSM 2588]
          Length = 315

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 19/102 (18%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N     K + +  + +  L+ LPA++ DL+  DPP         +     + + + 
Sbjct: 196 NMKLNDFDVSKHQFVHADVLQYLDTLPAETFDLVVLDPP--------TFSNSKRMKEFLD 247

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
              D  S            L       +P G ++   +Y   
Sbjct: 248 IQRDHVS-----------ILNKVLAATRPGGVIYFSNNYRRF 278


>gi|227533882|ref|ZP_03963931.1| possible cyclopropane-fatty-acyl-phospholipid synthase
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227188518|gb|EEI68585.1| possible cyclopropane-fatty-acyl-phospholipid synthase
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 393

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 64/199 (32%), Gaps = 22/199 (11%)

Query: 169 DALKAANEDVQMRSD--------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
                + ED+    D        WL P  + S        + L   Q  +  +  IL   
Sbjct: 106 HTEHKSKEDIHSHYDLGNDFYKLWLDPTLTYSCAYFEDWSDDLETAQLNK--IDHILRKL 163

Query: 221 TKPGD-IILDPFFGSGT-SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278
                  +LD   G GT     AK      +GI + ++   + + RI S + L ++   +
Sbjct: 164 NPQPGRTLLDIGCGWGTLMLRAAKTYHLKVVGITLSKEQFKLVSDRIES-EHLSDVAEVL 222

Query: 279 LTGKRTEPRVAFNLLVERGLI-QPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAK 337
               R   R  F+ +   G+    G+          A +  D  +        IH +  +
Sbjct: 223 YMDYRELNREPFDYITSVGMFEHVGKENLEGYFKDVAKLLKDDGVAL------IHGITRQ 276

Query: 338 VSGSETCNGWNFWYFEKLG 356
             G+   N W   Y    G
Sbjct: 277 QGGA--VNAWINKYIFPDG 293


>gi|116495566|ref|YP_807300.1| cyclopropane fatty acid synthase-like protein [Lactobacillus casei
           ATCC 334]
 gi|191639048|ref|YP_001988214.1| Cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus casei
           BL23]
 gi|301067104|ref|YP_003789127.1| cyclopropane fatty acid synthase-like methyltransferase
           [Lactobacillus casei str. Zhang]
 gi|116105716|gb|ABJ70858.1| cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus casei
           ATCC 334]
 gi|190713350|emb|CAQ67356.1| Cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus casei
           BL23]
 gi|300439511|gb|ADK19277.1| Cyclopropane fatty acid synthase related methyltransferase
           [Lactobacillus casei str. Zhang]
 gi|327383108|gb|AEA54584.1| Cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus casei
           LC2W]
 gi|327386292|gb|AEA57766.1| Cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus casei
           BD-II]
          Length = 393

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 64/199 (32%), Gaps = 22/199 (11%)

Query: 169 DALKAANEDVQMRSD--------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
                + ED+    D        WL P  + S        + L   Q  +  +  IL   
Sbjct: 106 HTEHKSKEDIHSHYDLGNDFYKLWLDPTLTYSCAYFEDWSDDLETAQLNK--IDHILRKL 163

Query: 221 TKPGD-IILDPFFGSGT-SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278
                  +LD   G GT     AK      +GI + ++   + + RI S + L ++   +
Sbjct: 164 NPQPGRTLLDIGCGWGTLMLRAAKTYHLKVVGITLSKEQFKLVSDRIES-EHLSDVAEVL 222

Query: 279 LTGKRTEPRVAFNLLVERGLI-QPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAK 337
               R   R  F+ +   G+    G+          A +  D  +        IH +  +
Sbjct: 223 YMDYRELNREPFDYITSVGMFEHVGKENLEGYFKDVAKLLKDDGVAL------IHGITRQ 276

Query: 338 VSGSETCNGWNFWYFEKLG 356
             G+   N W   Y    G
Sbjct: 277 QGGA--VNAWINKYIFPDG 293


>gi|239629965|ref|ZP_04672996.1| cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|239527577|gb|EEQ66578.1| cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus
           paracasei subsp. paracasei 8700:2]
          Length = 393

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 64/199 (32%), Gaps = 22/199 (11%)

Query: 169 DALKAANEDVQMRSD--------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
                + ED+    D        WL P  + S        + L   Q  +  +  IL   
Sbjct: 106 HTEHKSKEDIHSHYDLGNDFYKLWLDPTLTYSCAYFEDWSDDLETAQLNK--IDHILRKL 163

Query: 221 TKPGD-IILDPFFGSGT-SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278
                  +LD   G GT     AK      +GI + ++   + + RI S + L ++   +
Sbjct: 164 NPQPGRTLLDIGCGWGTLMLRAAKTYHLKVVGITLSKEQFKLVSDRIES-EHLSDVAEVL 222

Query: 279 LTGKRTEPRVAFNLLVERGLI-QPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAK 337
               R   R  F+ +   G+    G+          A +  D  +        IH +  +
Sbjct: 223 YMDYRELNREPFDYITSVGMFEHVGKENLEGYFKDVAKLLKDDGVAL------IHGITRQ 276

Query: 338 VSGSETCNGWNFWYFEKLG 356
             G+   N W   Y    G
Sbjct: 277 QGGA--VNAWINKYIFPDG 293


>gi|197286958|ref|YP_002152830.1| restriction endonuclease [Proteus mirabilis HI4320]
 gi|194684445|emb|CAR46177.1| putative restriction endonuclease [Proteus mirabilis HI4320]
          Length = 781

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 201 EKLHPTQ--KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           ++L P Q  K       ++   T+  D + DPF GSG+    A  + R+    E +    
Sbjct: 35  DQLFPFQGRKAINHAKSVIDILTEAEDTVCDPFSGSGSFAYAASLMNRNVYANEYEPYTY 94

Query: 259 DI 260
            +
Sbjct: 95  KM 96



 Score = 40.4 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 21/64 (32%)

Query: 1   MSQKNSLAINENQNSIFEWKDKI--IKGNSI--------------SVLEKLPAKSVDLIF 44
           + + N L I E Q     +K++I  I G S+                L K+  +++DL+ 
Sbjct: 286 LRETNILNIFEKQ-----FKNRINTIYGYSLNNFSKIKFGNSDYREFLSKIKPETIDLVI 340

Query: 45  ADPP 48
            DPP
Sbjct: 341 TDPP 344


>gi|219666708|ref|YP_002457143.1| hypothetical protein Dhaf_0642 [Desulfitobacterium hafniense DCB-2]
 gi|219536968|gb|ACL18707.1| hypothetical protein Dhaf_0642 [Desulfitobacterium hafniense DCB-2]
          Length = 435

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 24/41 (58%)

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           K    ILDP+ GSGT+  VA+++  S IG ++    + +A 
Sbjct: 43  KKDSRILDPWNGSGTTTQVAQEMGYSTIGYDINPVMVIVAK 83


>gi|332092513|gb|EGI97586.1| hypothetical protein SB521682_1270 [Shigella boydii 5216-82]
          Length = 702

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
             +I+ + ++ L +   +  DLIF DPP         +     + DA     D       
Sbjct: 591 HSLIQADCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|284173567|ref|ZP_06387536.1| hypothetical protein Ssol98_02775 [Sulfolobus solfataricus 98/2]
          Length = 299

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           I S S     K       T  PE   SR+LV+ ++P   +LDPF G+G+    A+ L   
Sbjct: 118 IDSKSLHEHEKKPFSQSGTMNPE--TSRLLVNLSRPKKEVLDPFVGTGSILIEARWLNYE 175

Query: 248 FIGIEMKQDYIDIAT 262
            IG ++ +  +    
Sbjct: 176 CIGSDLDKAMLQKTK 190


>gi|148927504|ref|ZP_01810999.1| ParB domain protein nuclease [candidate division TM7 genomosp.
           GTL1]
 gi|147887151|gb|EDK72624.1| ParB domain protein nuclease [candidate division TM7 genomosp.
           GTL1]
          Length = 386

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 11/121 (9%)

Query: 22  KIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           +++ G+S       + +  K  D+   DPPY L           +             + 
Sbjct: 169 RLMCGDSTIEADFAKLMNGKKADMCMTDPPYILDYLHAKRHGKPTTGFGAKRDRRYLEAD 228

Query: 79  EAYDAFTRAWLLAC------RRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           E ++ F R   + C       ++LKP GTL  I S  N +      + L  + +N++   
Sbjct: 229 EHFETFARTGDIYCLFYERGFQLLKPRGTLSFITS--NKWMRSAYGEKLRSYFVNEVNPL 286

Query: 133 K 133
            
Sbjct: 287 W 287


>gi|15897911|ref|NP_342516.1| hypothetical protein SSO1044 [Sulfolobus solfataricus P2]
 gi|13814228|gb|AAK41306.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
 gi|261602620|gb|ACX92223.1| putative RNA methylase [Sulfolobus solfataricus 98/2]
          Length = 314

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
           I S S     K       T  PE   SR+LV+ ++P   +LDPF G+G+    A+ L   
Sbjct: 133 IDSKSLHEHEKKPFSQSGTMNPE--TSRLLVNLSRPKKEVLDPFVGTGSILIEARWLNYE 190

Query: 248 FIGIEMKQDYIDIAT 262
            IG ++ +  +    
Sbjct: 191 CIGSDLDKAMLQKTK 205


>gi|307262525|ref|ZP_07544169.1| Type III restriction-modification system methylation subunit
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|306867780|gb|EFM99612.1| Type III restriction-modification system methylation subunit
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
          Length = 365

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYIDIATKRIASV 268
           +  ++    IILD F GSGT+      L       R +I +E  + +  +   R+  V
Sbjct: 94  IHINSLKESIILDYFAGSGTTAHAVINLNREDGGNRKYILVEQGEYFDTVLKPRVQKV 151


>gi|188591103|ref|YP_001795703.1| hypothetical protein RALTA_A0311 [Cupriavidus taiwanensis LMG
           19424]
 gi|170937997|emb|CAP62981.1| conserved hypothetical protein, putative methyltransferase
           [Cupriavidus taiwanensis LMG 19424]
          Length = 215

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 21/28 (75%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY 49
           ++++G++ ++  +LP  S D++F DPP+
Sbjct: 121 RVMQGDAFAIAAQLPDASFDVVFLDPPF 148


>gi|212224040|ref|YP_002307276.1| N2, N2-dimethylguanosine tRNA methyltransferase [Thermococcus
           onnurineus NA1]
 gi|212008997|gb|ACJ16379.1| N2, N2-dimethylguanosine tRNA methyltransferase [Thermococcus
           onnurineus NA1]
          Length = 331

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 5/69 (7%)

Query: 199 DGEKLH--PTQKPEALLSRI---LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           +  K H  P  +P +L  RI   LV+ TK  + ILDPF G+G     A  +     G+++
Sbjct: 150 ERRKAHHRPFFRPISLHPRISRALVNLTKAREEILDPFMGAGGILMEAGLIGLKVYGVDI 209

Query: 254 KQDYIDIAT 262
           K + ++ A 
Sbjct: 210 KPEMVEGAR 218


>gi|150006231|ref|YP_001300975.1| putative N6-adeinine specific methyltransferase [Bacteroides
           vulgatus ATCC 8482]
 gi|149934655|gb|ABR41353.1| putative N6-adeinine specific methyltransferase [Bacteroides
           vulgatus ATCC 8482]
          Length = 881

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 13/115 (11%)

Query: 35  LPAKSVDLIFADPPY---------NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           LP  SVD IF DPP+         N    G L    ++  +A+ +   K S F+ Y +  
Sbjct: 484 LPNSSVDYIFIDPPFGANIMYSELNSIWEGWLKVTTNNKEEAIINKEQKKSLFD-YQSLM 542

Query: 86  RAWLLACRRVLKPNGTL---WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
                   RVLKP   +   +   S      I   LQ++ F ++N     K    
Sbjct: 543 YKSFKEFYRVLKPGKWITIEFSNTSASVWNSIQNALQSVGFVVVNVAAIDKKQGS 597



 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           T+ P   + R ++  T+PGDI+ D F G+G +G  A+   
Sbjct: 135 TKVPHPAIMRYILHYTQPGDIVFDGFCGTGMTGVAAQLCG 174


>gi|227830150|ref|YP_002831929.1| RNA methylase [Sulfolobus islandicus L.S.2.15]
 gi|229578964|ref|YP_002837362.1| RNA methylase [Sulfolobus islandicus Y.G.57.14]
 gi|229582283|ref|YP_002840682.1| putative RNA methylase [Sulfolobus islandicus Y.N.15.51]
 gi|284997567|ref|YP_003419334.1| putative RNA methylase [Sulfolobus islandicus L.D.8.5]
 gi|227456597|gb|ACP35284.1| putative RNA methylase [Sulfolobus islandicus L.S.2.15]
 gi|228009678|gb|ACP45440.1| putative RNA methylase [Sulfolobus islandicus Y.G.57.14]
 gi|228012999|gb|ACP48760.1| putative RNA methylase [Sulfolobus islandicus Y.N.15.51]
 gi|284445462|gb|ADB86964.1| putative RNA methylase [Sulfolobus islandicus L.D.8.5]
          Length = 312

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           T  PE   SR+LV+  +P   +LDPF G+G+    A+ L    IG ++ +  +    
Sbjct: 149 TMSPE--TSRLLVNLCRPKKEVLDPFVGTGSILIEARWLNYDCIGSDLDKTMLQKTK 203


>gi|297199774|ref|ZP_06917171.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
 gi|197717070|gb|EDY61104.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
          Length = 728

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 35/106 (33%), Gaps = 18/106 (16%)

Query: 35  LPAKSVDLIFADPPY--NLQLN------GQLYRPDHSLVDAVTD-------SWDKFSSFE 79
           LP  SVDL+  DPP+  N+  +          R      D  TD          + +   
Sbjct: 496 LPNNSVDLVITDPPFMDNVHYSELADFFHAWLRQIQPFDDYPTDVGTTRHTEEVQSADPG 555

Query: 80  AYDAFTRAWLLACRRVLKPNGTL-WVIGSYH--NIFRIGTMLQNLN 122
            +     A    C R+LKP+G L +            +   L+   
Sbjct: 556 EFGHAIAAVWKECARILKPSGILAFTFHQARIAGWIELVKALETAG 601



 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
              ++ DPF GSGT+ A A KL    +G ++  
Sbjct: 98  EDLVVCDPFAGSGTTLAEAAKLGAKVVGRDINP 130


>gi|194290733|ref|YP_002006640.1| ribosomal protein l11 methyltransferase [Cupriavidus taiwanensis
           LMG 19424]
 gi|226710068|sp|B3R6K3|PRMA_CUPTR RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|193224568|emb|CAQ70579.1| Ribosomal protein L11 methyltransferase [Cupriavidus taiwanensis
           LMG 19424]
          Length = 297

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 12/130 (9%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  + L  +  PG+ +LD   GSG    VA+KL     +GI++  + +
Sbjct: 145 GTGSHPTTR---LCMQWLEQNLTPGETVLDYGCGSGILAIVARKLGAGDTVGIDIDPNAV 201

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + +  R  + +   N          +    +++L+V   L  P   L      +SA V A
Sbjct: 202 EAS--RYNAER---NHVEASFALPESVSDASYDLVVANILSNP---LKLMAAMLSARVRA 253

Query: 319 DGTLISGTEL 328
            G L+    L
Sbjct: 254 GGRLVLSGVL 263


>gi|24371991|ref|NP_716033.1| ribosomal protein L11 methyltransferase [Shewanella oneidensis
           MR-1]
 gi|38605312|sp|Q8EJR7|PRMA_SHEON RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|24345846|gb|AAN53478.1|AE015487_12 ribosomal protein L11 methyltransferase [Shewanella oneidensis
           MR-1]
          Length = 293

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 7/108 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  NY  ++         S   +P  +    + +     G   HPT    AL    
Sbjct: 95  WVREWMDNYHPIQFGKRLWICPSWREVPDPTAVNVILDPGLAFGTGTHPTT---ALCLEW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           L S     + ++D   GSG     A KL  +   GI++    ID +  
Sbjct: 152 LDSLDLSNEEVIDFGCGSGILAVAALKLGAKKVTGIDIDYQAIDASKA 199


>gi|284007562|emb|CBA73091.1| RNA methylase [Arsenophonus nasoniae]
          Length = 705

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 40/102 (39%), Gaps = 20/102 (19%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++I+ + ++ L +   K  DLIF DPP          +  ++  D   
Sbjct: 579 NLQTNQLTGQQHRLIQADCLAWLAQTSDK-FDLIFIDPP-----TFSNSKRMNTTFDVQR 632

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
           D  +               ++  +R+L+P+GT+    +    
Sbjct: 633 DHIN--------------LMMQIKRLLRPDGTVVFSNNKRGF 660


>gi|300788917|ref|YP_003769208.1| site-specific DNA-methyltransferase [Amycolatopsis mediterranei
           U32]
 gi|299798431|gb|ADJ48806.1| site-specific DNA-methyltransferase [Amycolatopsis mediterranei
           U32]
          Length = 126

 Score = 45.4 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 50/146 (34%), Gaps = 38/146 (26%)

Query: 111 IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
            +R+   LQ   + + N ++  +              ++ET+   + +     Y F+ DA
Sbjct: 15  CWRVAFALQEDGWLLRNALIVEQVP---------ETASYETVFLFARTT---RYYFDLDA 62

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
           +            W                    P Q    +L + + +      ++ DP
Sbjct: 63  IGTTTRKNPG-DVW--------------------PAQ---DVLEKCIAAGCPHEGVVADP 98

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQD 256
           F  S   GA A+++ R ++  E++  
Sbjct: 99  FGWSADVGAAARRVGRHYV--ELRPQ 122


>gi|297196470|ref|ZP_06913868.1| methyltransferase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297153226|gb|EFH32221.1| methyltransferase [Streptomyces pristinaespiralis ATCC 25486]
 gi|302607841|emb|CBW45752.1| N-methylase [Streptomyces pristinaespiralis]
          Length = 292

 Score = 45.4 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 43/103 (41%), Gaps = 6/103 (5%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I++G++     +L + +VDL+  +PPY + +  +   P+    D     W    + E  
Sbjct: 170 RIVQGDARDAFPEL-SGTVDLVVTNPPY-IPIGLRTSAPEVLEHDPPLALW----AGEEG 223

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
               RA      R+L P G L +    + +  +  + +    W
Sbjct: 224 LGMIRAMERTAARLLAPGGVLLLEHGSYQLASVPALFRATGRW 266


>gi|1575339|gb|AAC44869.1| PapM [Streptomyces pristinaespiralis]
          Length = 292

 Score = 45.4 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 43/103 (41%), Gaps = 6/103 (5%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I++G++     +L + +VDL+  +PPY + +  +   P+    D     W    + E  
Sbjct: 170 RIVQGDARDAFPEL-SGTVDLVVTNPPY-IPIGLRTSAPEVLEHDPPLALW----AGEEG 223

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
               RA      R+L P G L +    + +  +  + +    W
Sbjct: 224 LGMIRAMERTAARLLAPGGVLLLEHGSYQLASVPALFRATGRW 266


>gi|83746797|ref|ZP_00943845.1| Ribosomal protein L11 methyltransferase [Ralstonia solanacearum
           UW551]
 gi|207721541|ref|YP_002251980.1| ribosomal protein l11 methyltransferase [Ralstonia solanacearum
           MolK2]
 gi|207744345|ref|YP_002260737.1| ribosomal protein l11 methyltransferase (l11 mtase) [Ralstonia
           solanacearum IPO1609]
 gi|83726566|gb|EAP73696.1| Ribosomal protein L11 methyltransferase [Ralstonia solanacearum
           UW551]
 gi|206586702|emb|CAQ17287.1| ribosomal protein l11 methyltransferase (l11 mtase) [Ralstonia
           solanacearum MolK2]
 gi|206595750|emb|CAQ62677.1| ribosomal protein l11 methyltransferase (l11 mtase) [Ralstonia
           solanacearum IPO1609]
          Length = 298

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 12/130 (9%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L    L    +PG+  LD   GSG    VAKKL     +GI++  + +
Sbjct: 145 GTGSHPTTR---LCMEWLEQHVQPGERALDYGCGSGILAIVAKKLGAGETLGIDIDPNAV 201

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + +  R  + +   N      +     P   F+L+V   L  P   L      + A V  
Sbjct: 202 EAS--RYNAER---NRVEAGFSLPDNAPEGTFDLVVANILSNP---LKLMAAMLCARVRP 253

Query: 319 DGTLISGTEL 328
            G L+    L
Sbjct: 254 GGRLVLSGVL 263


>gi|269102658|ref|ZP_06155355.1| hypothetical N6-adenine-specific DNA methylase [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268162556|gb|EEZ41052.1| hypothetical N6-adenine-specific DNA methylase [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 680

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 41/126 (32%), Gaps = 22/126 (17%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           I+ + +  L++   +S DLIF DPP         +     +        D     E    
Sbjct: 570 IQADCLQWLQE-SNESFDLIFIDPP--------TFSNSKRMKQTFDVQRDHIMLME---- 616

Query: 84  FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
                    +R+L+P G +    +          L  L     N  +  K+ PM   + +
Sbjct: 617 -------NLKRMLRPEGQIVFSNNKRQFKMDLEALAELGLQAKN--ISDKTLPMDFAKNK 667

Query: 144 RFQNAH 149
           +  N  
Sbjct: 668 QIHNCW 673


>gi|254446610|ref|ZP_05060086.1| Methyltransferase domain family [Verrucomicrobiae bacterium DG1235]
 gi|198260918|gb|EDY85226.1| Methyltransferase domain family [Verrucomicrobiae bacterium DG1235]
          Length = 376

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 54/151 (35%), Gaps = 8/151 (5%)

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
            N   +++ N   +   R        L W       +   F   A K+          W 
Sbjct: 142 ANWECYKRFNKRIDLIKRDDVTTRLRLAWHPNKVYNRIPQFLRPATKSVEPIRLSAKLWW 201

Query: 186 I-----PICSGSERLRNKDGEKLHP-TQKPEALLSRILV-SSTKPGDIILDPFFGSGT-S 237
           I     PI S +++   +D +   P    P  L+  +L  ++  P D +LD   G G   
Sbjct: 202 ISLLTSPIFSLAKKRSRQDKQTDWPFLGTPMELIPSLLEFANITPSDTLLDIGCGDGRIV 261

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
              AK      IGIE   D  ++A KR+ S 
Sbjct: 262 LEAAKTYGCKSIGIEKDPDLANLAKKRVESA 292


>gi|326796324|ref|YP_004314144.1| ribosomal protein L11 methyltransferase [Marinomonas mediterranea
           MMB-1]
 gi|326547088|gb|ADZ92308.1| Ribosomal protein L11 methyltransferase [Marinomonas mediterranea
           MMB-1]
          Length = 295

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 59/177 (33%), Gaps = 20/177 (11%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  NY  +K  N      +   +P       + +     G   HPT    AL    
Sbjct: 97  WIREWMDNYHPIKFGNRLWVCPTWREVPDEDAITLMLDPGLAFGTGTHPTT---ALCLEW 153

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S       I+D   GSG  G     L  +  IGI++    ++             N E
Sbjct: 154 LDSVDCKDKTIIDYGCGSGILGVAGLLLGAKQMIGIDIDPQAVEATR---------ANAE 204

Query: 276 LTVLTGKRTEPRV-AFNLLVERGLIQPGQI---LTNAQGNISATVCADGTLISGTEL 328
              +   + E ++  ++  ++  L+    +   L      ISATV   G L     L
Sbjct: 205 RNNIESSKYEVKLPPYDSDLQADLVVANILAGPLAELSSTISATVKTGGKLALSGVL 261


>gi|301110222|ref|XP_002904191.1| methyltransferase WBSCR22 [Phytophthora infestans T30-4]
 gi|262096317|gb|EEY54369.1| methyltransferase WBSCR22 [Phytophthora infestans T30-4]
          Length = 278

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 210 EALLSRILVSSTKPGD---IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           E L +R +     P      ILD   GSG SG   ++   +++G+++ +D +DIA++R
Sbjct: 33  EELSNRAIELLNLPDGKEAFILDVGCGSGLSGVALEEHGHAWVGVDISKDMLDIASER 90


>gi|167426029|ref|ZP_02317782.1| modification methylase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167054952|gb|EDR64752.1| modification methylase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
          Length = 439

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
            L+  +L   +    II DPF GSGT+   A +    F+G+++  
Sbjct: 51  ELIDAVLEIDSNVTSII-DPFVGSGTTLGEAMRRGLDFVGMDINP 94


>gi|197284666|ref|YP_002150538.1| 23S rRNA m(2)G2445 methyltransferase [Proteus mirabilis HI4320]
 gi|229560193|sp|B4EVC6|RLML_PROMH RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|194682153|emb|CAR41773.1| putative RNA methylase [Proteus mirabilis HI4320]
          Length = 704

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 37/113 (32%), Gaps = 20/113 (17%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++++ + +  L +   +  D+IF DPP         +     + +   
Sbjct: 579 NFQANGLSGRQHRLMQADCLQWLSQ-SNEQFDVIFIDPP--------TFSNSKRMENTFD 629

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
              D               +   +R+L+  GT+    +          L N+ 
Sbjct: 630 VQRDHI-----------ELMKHLKRLLRKGGTIMFSNNKRGFKMDHEALANIG 671


>gi|167760230|ref|ZP_02432357.1| hypothetical protein CLOSCI_02603 [Clostridium scindens ATCC 35704]
 gi|167662113|gb|EDS06243.1| hypothetical protein CLOSCI_02603 [Clostridium scindens ATCC 35704]
          Length = 783

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 3/97 (3%)

Query: 193 ERLRNKDGEKLHP--TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
            R      E++ P   +K   +   ++ + T    +++DPF GSGT    A    R    
Sbjct: 26  NRQPRDQSEQIFPFIGRKSRTIARTLIENLTDENGLVVDPFGGSGTFAYAALDAGRHVRF 85

Query: 251 IEMKQDYIDIATKRIASVQPLGNI-ELTVLTGKRTEP 286
            E +     ++T     V              +R EP
Sbjct: 86  NEWEPYAYKLSTAPFRGVPSSEEYCAALRFIAQRVEP 122



 Score = 38.0 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 35/113 (30%), Gaps = 19/113 (16%)

Query: 31  VLEKLPAKSVDLIFADPPY--NLQLNGQLYRPDHSLVDAVTDSWDKFS------------ 76
            L  +   +V+L+  DPPY  N Q      R    +  ++ D  D+              
Sbjct: 326 FLHTILPNTVNLLLTDPPYGDNAQYFEHAQRIHPLMGYSLKDDDDRLRNEVVISNAPSRV 385

Query: 77  ---SFEAYDAFTRAWLLACRRVLKPNGT--LWVIGSYHNIFRIGTMLQNLNFW 124
              S + +        +   R++  +G   L+      +       L++    
Sbjct: 386 DKHSKDQFLNDIERLFIEANRIVDDHGFMVLYFRPQQRDWVSDLNKLKDFGRR 438


>gi|295677719|ref|YP_003606243.1| ribosomal protein L11 methyltransferase [Burkholderia sp. CCGE1002]
 gi|295437562|gb|ADG16732.1| ribosomal protein L11 methyltransferase [Burkholderia sp. CCGE1002]
          Length = 300

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 16/143 (11%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYI 258
           G   HPT +   L    +  S KPG  +LD   GSG    +AKK      IGI++    +
Sbjct: 145 GTGSHPTTR---LCMEWIEQSIKPGQSVLDYGCGSGILAILAKKCGADPVIGIDIDPQAV 201

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + A  R  S +   ++   +       P   F+++V   L  P +++ +    +S+ V  
Sbjct: 202 ESA--RHNSERNHADVTYGLPD---ACPAGEFDVVVANILSNPLKLMASM---LSSKVKP 253

Query: 319 DGTLISGTELGS----IHRVGAK 337
            G +     L      + +V A+
Sbjct: 254 GGRIALSGILARQADEVAQVYAR 276


>gi|229073309|ref|ZP_04206459.1| Modification methylase [Bacillus cereus F65185]
 gi|228709816|gb|EEL61840.1| Modification methylase [Bacillus cereus F65185]
          Length = 419

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 204 HPTQKPEALLSRILVSSTKPGDI---ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +P      +   ++    +       +LDPF GSG +   +K L     GI++      I
Sbjct: 33  YPATMVPDMQYELIKIIAEYDGNIINVLDPFHGSGVTLVESKSLGLRPYGIDINPLAHLI 92

Query: 261 ATKRIASV 268
              ++  V
Sbjct: 93  TKVKLEGV 100



 Score = 42.7 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 18/48 (37%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           G+S+ +L+    +  DLI   PPY        Y     L     D  D
Sbjct: 227 GDSVEILKDYEKEQFDLICTSPPYGDNATTVTYGQYSMLPIYWIDYKD 274


>gi|45443522|ref|NP_995061.1| modification methylase [Yersinia pestis biovar Microtus str. 91001]
 gi|229837035|ref|ZP_04457200.1| modification methylase [Yersinia pestis Pestoides A]
 gi|45438391|gb|AAS63938.1| modification methylase [Yersinia pestis biovar Microtus str. 91001]
 gi|229705978|gb|EEO91987.1| modification methylase [Yersinia pestis Pestoides A]
          Length = 443

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
            L+  +L   +    II DPF GSGT+   A +    F+G+++  
Sbjct: 53  ELIDAVLEIDSNVTSII-DPFVGSGTTLGEAMRRGLDFVGMDINP 96


>gi|22127663|ref|NP_671086.1| modification methylase [Yersinia pestis KIM 10]
 gi|108809883|ref|YP_653799.1| modification methylase [Yersinia pestis Antiqua]
 gi|108810428|ref|YP_646195.1| modification methylase [Yersinia pestis Nepal516]
 gi|150260566|ref|ZP_01917294.1| modification methylase [Yersinia pestis CA88-4125]
 gi|162421405|ref|YP_001605783.1| modification methylase [Yersinia pestis Angola]
 gi|165927281|ref|ZP_02223113.1| modification methylase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165936505|ref|ZP_02225073.1| modification methylase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166008830|ref|ZP_02229728.1| modification methylase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166211979|ref|ZP_02238014.1| modification methylase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167400589|ref|ZP_02306098.1| modification methylase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167419155|ref|ZP_02310908.1| modification methylase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167467845|ref|ZP_02332549.1| modification methylase [Yersinia pestis FV-1]
 gi|218927593|ref|YP_002345468.1| modification methylase [Yersinia pestis CO92]
 gi|229840267|ref|ZP_04460426.1| modification methylase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229842345|ref|ZP_04462500.1| modification methylase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229900610|ref|ZP_04515734.1| modification methylase [Yersinia pestis Nepal516]
 gi|294502496|ref|YP_003566558.1| modification methylase [Yersinia pestis Z176003]
 gi|21960778|gb|AAM87337.1|AE013982_4 putative methyltransferase [Yersinia pestis KIM 10]
 gi|108774076|gb|ABG16595.1| modification methylase [Yersinia pestis Nepal516]
 gi|108781796|gb|ABG15854.1| modification methylase [Yersinia pestis Antiqua]
 gi|115346204|emb|CAL19072.1| modification methylase [Yersinia pestis CO92]
 gi|149289974|gb|EDM40051.1| modification methylase [Yersinia pestis CA88-4125]
 gi|162354220|gb|ABX88168.1| modification methylase [Yersinia pestis Angola]
 gi|165915621|gb|EDR34230.1| modification methylase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165920743|gb|EDR37991.1| modification methylase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165992169|gb|EDR44470.1| modification methylase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166206725|gb|EDR51205.1| modification methylase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166963149|gb|EDR59170.1| modification methylase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167049957|gb|EDR61365.1| modification methylase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|229681949|gb|EEO78041.1| modification methylase [Yersinia pestis Nepal516]
 gi|229690655|gb|EEO82709.1| modification methylase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229696633|gb|EEO86680.1| modification methylase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|262360527|gb|ACY57248.1| modification methylase [Yersinia pestis D106004]
 gi|262364473|gb|ACY61030.1| modification methylase [Yersinia pestis D182038]
 gi|294352955|gb|ADE63296.1| modification methylase [Yersinia pestis Z176003]
 gi|320017052|gb|ADW00624.1| modification methylase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 441

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
            L+  +L   +    II DPF GSGT+   A +    F+G+++  
Sbjct: 53  ELIDAVLEIDSNVTSII-DPFVGSGTTLGEAMRRGLDFVGMDINP 96


>gi|323474512|gb|ADX85118.1| putative RNA methylase [Sulfolobus islandicus REY15A]
 gi|323477248|gb|ADX82486.1| putative RNA methylase [Sulfolobus islandicus HVE10/4]
          Length = 312

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           T  PE   SR+LV+ ++P   +LDPF G+G+    A+ L    IG ++ +  +    
Sbjct: 149 TMSPE--TSRLLVNLSRPKKEVLDPFVGTGSILIEARWLNYDCIGSDLDKTMLQKTK 203


>gi|254478002|ref|ZP_05091386.1| DNA methylase domain protein [Carboxydibrachium pacificum DSM
           12653]
 gi|214036006|gb|EEB76696.1| DNA methylase domain protein [Carboxydibrachium pacificum DSM
           12653]
          Length = 862

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 2/86 (2%)

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
            P+P  K +   Y        D      +   +  G              T+ P   + R
Sbjct: 37  CPNPFIKDFIEKYGKKYDEETDDYEVEPFAADVSEGKNDPIYNAHSYH--TKVPPKAIMR 94

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVA 241
            ++  TKPGDI+ D F G+G +G  A
Sbjct: 95  YILHYTKPGDIVFDGFCGTGMTGVAA 120



 Score = 43.8 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 43/122 (35%), Gaps = 13/122 (10%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQL---------NGQLYRPDHSLVDAVTDSWDKFSS 77
           NS S L  +P+ S+D IF DPP+   L            L    ++  +AV +   K   
Sbjct: 460 NSSSELTNIPSNSIDYIFTDPPFGDNLMYSELNFIWEAWLRVFTNNKTEAVINKTQKKGL 519

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHN--IFRIGTMLQNLNFWILNDIVWRKS 134
           +E Y            R+LKP   +     +  N     I   +    F I N  V  K 
Sbjct: 520 YE-YQELMEKCFREMYRILKPGRWMTVEFHNSKNAVWNAIQEAILRAGFVIANVRVLDKK 578

Query: 135 NP 136
             
Sbjct: 579 QG 580


>gi|206561759|ref|YP_002232524.1| ribosomal protein L11 methyltransferase [Burkholderia cenocepacia
           J2315]
 gi|226710058|sp|B4E5V2|PRMA_BURCJ RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|198037801|emb|CAR53745.1| ribosomal protein L11 methyltransferase [Burkholderia cenocepacia
           J2315]
          Length = 300

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYI 258
           G   HPT +   L    L  S KPG  +LD   GSG    +AKK   +  IGI++    +
Sbjct: 145 GTGSHPTTR---LCMEWLEQSVKPGQSVLDYGCGSGILAILAKKCGANPVIGIDIDPQAV 201

Query: 259 DIATK 263
           + A +
Sbjct: 202 ESARQ 206


>gi|170731925|ref|YP_001763872.1| ribosomal protein L11 methyltransferase [Burkholderia cenocepacia
           MC0-3]
 gi|226710057|sp|B1JVC0|PRMA_BURCC RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|169815167|gb|ACA89750.1| ribosomal protein L11 methyltransferase [Burkholderia cenocepacia
           MC0-3]
          Length = 300

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYI 258
           G   HPT +   L    L  S KPG  +LD   GSG    +AKK   +  IGI++    +
Sbjct: 145 GTGSHPTTR---LCMEWLEQSVKPGQSVLDYGCGSGILAILAKKCGANPVIGIDIDPQAV 201

Query: 259 DIATK 263
           + A +
Sbjct: 202 ESARQ 206


>gi|78065162|ref|YP_367931.1| ribosomal protein L11 methyltransferase [Burkholderia sp. 383]
 gi|123569367|sp|Q39JS9|PRMA_BURS3 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|77965907|gb|ABB07287.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [Burkholderia sp. 383]
          Length = 300

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYI 258
           G   HPT +   L    L  S KPG  +LD   GSG    +AKK   +  IGI++    +
Sbjct: 145 GTGSHPTTR---LCMEWLEQSVKPGQSVLDYGCGSGILAILAKKCGANPVIGIDIDPQAV 201

Query: 259 DIATK 263
           + A +
Sbjct: 202 ESARQ 206


>gi|55978368|ref|YP_145424.1| hypothetical protein TTHB185 [Thermus thermophilus HB8]
 gi|55773541|dbj|BAD71981.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 314

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           P A+   ++   T+ G+++LDP  G GT    A+ L R   G ++  
Sbjct: 135 PMAVARALVQLYTREGELVLDPMAGRGTVVEAARALDRRAWGGDIAP 181


>gi|254246385|ref|ZP_04939706.1| Ribosomal protein L11 [Burkholderia cenocepacia PC184]
 gi|124871161|gb|EAY62877.1| Ribosomal protein L11 [Burkholderia cenocepacia PC184]
          Length = 300

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYI 258
           G   HPT +   L    L  S KPG  +LD   GSG    +AKK   +  IGI++    +
Sbjct: 145 GTGSHPTTR---LCMEWLEQSVKPGQSVLDYGCGSGILAILAKKCGANPVIGIDIDPQAV 201

Query: 259 DIATK 263
           + A +
Sbjct: 202 ESARQ 206


>gi|107021680|ref|YP_620007.1| ribosomal protein L11 methyltransferase [Burkholderia cenocepacia
           AU 1054]
 gi|116688626|ref|YP_834249.1| ribosomal protein L11 methyltransferase [Burkholderia cenocepacia
           HI2424]
 gi|123072432|sp|Q1BZC1|PRMA_BURCA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|166223397|sp|A0K4C9|PRMA_BURCH RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|105891869|gb|ABF75034.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [Burkholderia cenocepacia AU 1054]
 gi|116646715|gb|ABK07356.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [Burkholderia cenocepacia HI2424]
          Length = 300

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYI 258
           G   HPT +   L    L  S KPG  +LD   GSG    +AKK   +  IGI++    +
Sbjct: 145 GTGSHPTTR---LCMEWLEQSVKPGQSVLDYGCGSGILAILAKKCGANPVIGIDIDPQAV 201

Query: 259 DIATK 263
           + A +
Sbjct: 202 ESARQ 206


>gi|307131473|ref|YP_003883489.1| 23S rRNA m2G2445 methyltransferase [Dickeya dadantii 3937]
 gi|306529002|gb|ADM98932.1| 23S rRNA m2G2445 methyltransferase [Dickeya dadantii 3937]
          Length = 707

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 35/102 (34%), Gaps = 20/102 (19%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++I  + ++ + +   +  DLIF DPP         +     + ++  
Sbjct: 581 NLRLNGLTGRQHRLIHADCLAWMRE-THEQFDLIFIDPP--------TFSNSKRMDESFD 631

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
              D               +   +R+L+P G +    +    
Sbjct: 632 VQRDHLM-----------LMTQLKRILRPGGIIMFSNNKRGF 662


>gi|219113215|ref|XP_002186191.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583041|gb|ACI65661.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 305

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G  +HPT +   L    +  + + G+++LD   GSG     A     R  IG++++ + +
Sbjct: 101 GTGVHPTTR---LCLDWICQTVQNGNVVLDYGCGSGILSVAALHNGARRCIGVDVEAEAL 157

Query: 259 DIATK 263
             A++
Sbjct: 158 VTASR 162


>gi|85058129|ref|YP_453831.1| ribosomal protein L11 methyltransferase [Sodalis glossinidius str.
           'morsitans']
 gi|123520296|sp|Q2NWP9|PRMA_SODGM RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|84778649|dbj|BAE73426.1| ribosomal protein L11 methyltransferase [Sodalis glossinidius str.
           'morsitans']
          Length = 293

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 50/144 (34%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P       + +     G   HPT    AL  + 
Sbjct: 95  WEREWMDNFHPMRFGERLWICPSWRPVPDPQAVNVMLDPGLAFGTGTHPTT---ALCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG     A KL     +GI++    I  +     + Q  G  E
Sbjct: 152 LDGLDLRGKTVIDFGCGSGILAIAALKLGAAHAVGIDIDPQAILASRD---NAQRNGVAE 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
           L  L   + +P+     +V   ++
Sbjct: 209 LLTLYLPQQQPQDLHANVVVANIL 232


>gi|124004584|ref|ZP_01689429.1| DNA methylase domain protein [Microscilla marina ATCC 23134]
 gi|123990156|gb|EAY29670.1| DNA methylase domain protein [Microscilla marina ATCC 23134]
          Length = 522

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 71/222 (31%), Gaps = 29/222 (13%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFAD-PPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
            +++I G++ +VL  L ++S+DL++ D PP         +  D + V +           
Sbjct: 1   MNQLILGDTQNVLAVLESQSIDLVYIDLPP---------HIVDPATVTSSN------KQA 45

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLW-VIGSYHNIFRIGTML--QNLNFWILNDIVWRKSN 135
           + Y  + +  +     +LK   +++  I S    + + T L           +I W+ + 
Sbjct: 46  KNYQKWLKNTIKHTLPLLKSTASVFVNIPSSLKEWAVNTALPKHFEEAHYKGEIKWKPTQ 105

Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
              N            L +A        Y +N   L         +  + +   +     
Sbjct: 106 NTGNLSVHTSLQYTTILYYARSEQYTCNYPYNEHYLNQIYRYEDSKGRYRLDSLNSVHAD 165

Query: 196 RNKDGEKLHPTQ-----KPEA-LLSR----ILVSSTKPGDII 227
                 K H         PE  L+      +L       D I
Sbjct: 166 GFFYSYKGHEAPTSGWAFPEETLIEWEHLGLLNIPANNDDPI 207


>gi|270488030|ref|ZP_06205104.1| conserved domain protein [Yersinia pestis KIM D27]
 gi|270336534|gb|EFA47311.1| conserved domain protein [Yersinia pestis KIM D27]
          Length = 263

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
            L+  +L   +    II DPF GSGT+   A +    F+G+++  
Sbjct: 53  ELIDAVLEIDSNVTSII-DPFVGSGTTLGEAMRRGLDFVGMDINP 96


>gi|237730904|ref|ZP_04561385.1| 23S rRNA m(2) methyltransferase [Citrobacter sp. 30_2]
 gi|226906443|gb|EEH92361.1| 23S rRNA m(2) methyltransferase [Citrobacter sp. 30_2]
          Length = 702

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + +  L     +  DLIF DPP         +     + D+     D       
Sbjct: 591 HRLIQADCLGWLRD-ANEQFDLIFIDPP--------TFSNSKRMEDSFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                 A +   +R+L+ +GT+    +          L  L   +    + +K+      
Sbjct: 637 ------ALMKDLKRLLRKDGTIMFSNNKRGFRMDLDGLAELG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|126176128|ref|YP_001052277.1| ribosomal protein L11 methyltransferase [Shewanella baltica OS155]
 gi|166223437|sp|A3D9J5|PRMA_SHEB5 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|125999333|gb|ABN63408.1| LSU ribosomal protein L11P methyltransferase [Shewanella baltica
           OS155]
          Length = 293

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 7/108 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   IP  +    + +     G   HPT    AL    
Sbjct: 95  WVREWMDNFHPIQFGTRLWICPSWREIPDPTAVNVILDPGLAFGTGTHPTT---ALCLEW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           L S     + ++D   GSG     A KL  ++  GI++    ID +  
Sbjct: 152 LDSLDLSNEEVIDFGCGSGILAVAALKLGAKNVTGIDIDYQAIDASRA 199


>gi|227356872|ref|ZP_03841251.1| N6-adenine-specific DNA methytransferase [Proteus mirabilis ATCC
           29906]
 gi|227162942|gb|EEI47887.1| N6-adenine-specific DNA methytransferase [Proteus mirabilis ATCC
           29906]
          Length = 716

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 20/113 (17%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++++ + +  L +   +  D+IF DPP         +     + +   
Sbjct: 591 NFQANGLSGRQHRLMQADCLQWLSQ-SNEQFDVIFIDPP--------TFSNSKRMENTFD 641

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
              D               +   +R+L+ +GT+    +          L N+ 
Sbjct: 642 VQRDHI-----------ELMKHLKRLLRKDGTIMFSNNKRGFKMDHEALANIG 683


>gi|291619128|ref|YP_003521870.1| PrmA [Pantoea ananatis LMG 20103]
 gi|291154158|gb|ADD78742.1| PrmA [Pantoea ananatis LMG 20103]
          Length = 294

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 7/108 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P       + +     G   HPT    +L    
Sbjct: 95  WEREWMENFHPMRFGERLWICPSWRDVPDPDAVNVMLDPGLAFGTGTHPTT---SLCLTW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           L      G  ++D   GSG     A KL     IGI++    I  +  
Sbjct: 152 LDGLDLAGKTVIDFGCGSGILAIAALKLGAAQAIGIDIDPQAIQASRD 199


>gi|222481471|ref|YP_002567707.1| adenine-specific DNA methylase [Halorubrum lacusprofundi ATCC
           49239]
 gi|222454847|gb|ACM59110.1| adenine-specific DNA methylase [Halorubrum lacusprofundi ATCC
           49239]
          Length = 453

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 11/98 (11%)

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS-----TKPGDIILDPFFGSGTS 237
           DW     +  +      G   +P +    ++  +L         + GD+I DPF GSGT+
Sbjct: 26  DWTFKGVNTQKYTH---GLHKYPARMVPQIVDNLLSYYLDEGVIEEGDLIYDPFSGSGTT 82

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
              A+    +    ++    + ++    A   PL   +
Sbjct: 83  SVEARLHGLNAEANDINPFAVMLSE---AKATPLERND 117


>gi|168182634|ref|ZP_02617298.1| O-methyltransferase family protein [Clostridium botulinum Bf]
 gi|237795994|ref|YP_002863546.1| O-methyltransferase family protein [Clostridium botulinum Ba4 str.
           657]
 gi|182674214|gb|EDT86175.1| O-methyltransferase family protein [Clostridium botulinum Bf]
 gi|229261153|gb|ACQ52186.1| O-methyltransferase family protein [Clostridium botulinum Ba4 str.
           657]
          Length = 218

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 6   SLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
            +A N  +   F+ K KII+G+ + +L+ L  K  D+IF D
Sbjct: 94  EIAKNNIEKYSFKDKIKIIQGDCLEILKDLEDKY-DMIFMD 133


>gi|160877183|ref|YP_001556499.1| ribosomal protein L11 methyltransferase [Shewanella baltica OS195]
 gi|189037702|sp|A9L5E5|PRMA_SHEB9 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|160862705|gb|ABX51239.1| ribosomal protein L11 methyltransferase [Shewanella baltica OS195]
 gi|315269387|gb|ADT96240.1| ribosomal protein L11 methyltransferase [Shewanella baltica OS678]
          Length = 293

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 7/108 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   IP  +    + +     G   HPT    AL    
Sbjct: 95  WVREWMDNFHPIQFGTRLWICPSWREIPDPTAVNVILDPGLAFGTGTHPTT---ALCLEW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           L S     + ++D   GSG     A KL  ++  GI++    ID +  
Sbjct: 152 LDSLDLSDEEVIDFGCGSGILAVAALKLGAKNVTGIDIDYQAIDASRA 199


>gi|113968745|ref|YP_732538.1| ribosomal protein L11 methyltransferase [Shewanella sp. MR-4]
 gi|114049111|ref|YP_739661.1| ribosomal protein L11 methyltransferase [Shewanella sp. MR-7]
 gi|117918857|ref|YP_868049.1| ribosomal protein L11 methyltransferase [Shewanella sp. ANA-3]
 gi|123131003|sp|Q0HQK1|PRMA_SHESR RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|123325435|sp|Q0HN86|PRMA_SHESM RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|166223441|sp|A0KS74|PRMA_SHESA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|113883429|gb|ABI37481.1| LSU ribosomal protein L11P methyltransferase [Shewanella sp. MR-4]
 gi|113890553|gb|ABI44604.1| LSU ribosomal protein L11P methyltransferase [Shewanella sp. MR-7]
 gi|117611189|gb|ABK46643.1| LSU ribosomal protein L11P methyltransferase [Shewanella sp. ANA-3]
          Length = 293

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 7/108 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  NY  ++         S   +P  S    + +     G   HPT    AL    
Sbjct: 95  WVREWMDNYHPIQFGKRLWICPSWREVPDPSAVNVILDPGLAFGTGTHPTT---ALCLEW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           L S     + ++D   GSG     A KL  +   GI++    I+ +  
Sbjct: 152 LDSLDLSNEEVIDFGCGSGILAVAALKLGAKKVTGIDIDYQAIEASKA 199


>gi|304396992|ref|ZP_07378872.1| ribosomal protein L11 methyltransferase [Pantoea sp. aB]
 gi|304355788|gb|EFM20155.1| ribosomal protein L11 methyltransferase [Pantoea sp. aB]
          Length = 293

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 7/108 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P       + +     G   HPT    +L    
Sbjct: 95  WEREWMENFHPMRFGERLWICPSWRDVPDPDAVNVMLDPGLAFGTGTHPTT---SLCLTW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           L      G  ++D   GSG     A KL     IGI++    I  +  
Sbjct: 152 LDGLDLDGKTVIDFGCGSGILAIAALKLGAAQAIGIDIDPQAIQASRD 199


>gi|218248607|ref|YP_002373978.1| hypothetical protein PCC8801_3873 [Cyanothece sp. PCC 8801]
 gi|257061673|ref|YP_003139561.1| hypothetical protein Cyan8802_3922 [Cyanothece sp. PCC 8802]
 gi|218169085|gb|ACK67822.1| conserved hypothetical protein [Cyanothece sp. PCC 8801]
 gi|256591839|gb|ACV02726.1| hypothetical protein Cyan8802_3922 [Cyanothece sp. PCC 8802]
          Length = 439

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 211 ALLSRILVSST-KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
            L+  ++          +LDPF G GT+    +K     +GIE+  
Sbjct: 61  ELVRFLIKELQITEEYFVLDPFSGRGTTSIECQKQGIKSLGIEINP 106


>gi|217975033|ref|YP_002359784.1| ribosomal protein L11 methyltransferase [Shewanella baltica OS223]
 gi|304412482|ref|ZP_07394088.1| ribosomal protein L11 methyltransferase [Shewanella baltica OS183]
 gi|307307141|ref|ZP_07586879.1| ribosomal protein L11 methyltransferase [Shewanella baltica BA175]
 gi|254783312|sp|B8E680|PRMA_SHEB2 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|217500168|gb|ACK48361.1| ribosomal protein L11 methyltransferase [Shewanella baltica OS223]
 gi|304349124|gb|EFM13536.1| ribosomal protein L11 methyltransferase [Shewanella baltica OS183]
 gi|306910380|gb|EFN40811.1| ribosomal protein L11 methyltransferase [Shewanella baltica BA175]
          Length = 293

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 7/108 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   IP  +    + +     G   HPT    AL    
Sbjct: 95  WVREWMDNFHPIQFGTRLWICPSWREIPDPTAVNVILDPGLAFGTGTHPTT---ALCLEW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           L S     + ++D   GSG     A KL  ++  GI++    ID +  
Sbjct: 152 LDSLDLSDEEVIDFGCGSGILAVAALKLGAKNVTGIDIDYQAIDASRA 199


>gi|309783077|ref|ZP_07677796.1| ribosomal protein L11 methyltransferase [Ralstonia sp. 5_7_47FAA]
 gi|308918185|gb|EFP63863.1| ribosomal protein L11 methyltransferase [Ralstonia sp. 5_7_47FAA]
          Length = 298

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 50/130 (38%), Gaps = 12/130 (9%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L    L    +PG+  LD   GSG    VAKKL     +G+++  + +
Sbjct: 145 GTGSHPTTR---LCMEWLEQHVQPGERTLDYGCGSGILAIVAKKLGAGETVGVDIDPNAV 201

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + +  R  + +   N            P   F+L+V   L  P   L      + A V  
Sbjct: 202 EAS--RYNAER---NHVQATFALPDDAPEGTFDLVVANILSNP---LKLMAAMLCARVRP 253

Query: 319 DGTLISGTEL 328
            G LI    L
Sbjct: 254 GGRLILSGVL 263


>gi|307151064|ref|YP_003886448.1| methyltransferase [Cyanothece sp. PCC 7822]
 gi|306981292|gb|ADN13173.1| methyltransferase [Cyanothece sp. PCC 7822]
          Length = 179

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
           NS  E+  +II+G+ +S L  L  K  D I+ DPPYN  L
Sbjct: 85  NSAQEF--QIIRGDVVSKLSTLSEKKFDRIYFDPPYNSGL 122


>gi|156934565|ref|YP_001438481.1| 23S rRNA m(2)G2445 methyltransferase [Cronobacter sakazakii ATCC
           BAA-894]
 gi|229560153|sp|A7MEX5|RLML_ENTS8 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|156532819|gb|ABU77645.1| hypothetical protein ESA_02399 [Cronobacter sakazakii ATCC BAA-894]
          Length = 705

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 43/129 (33%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + +S L +   +  DLIF DPP         +     + +      D       
Sbjct: 591 HRLIQADCLSWLAE-SDEQFDLIFIDPP--------TFSNSKRMEETFDVQRDHLR---- 637

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                   +   +R+L+ +GT+    +          L  L   +    + +K+      
Sbjct: 638 -------LMKDLKRLLRRDGTIMFSNNKRGFKMDHEGLAALG--LKAQDITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|84394217|ref|ZP_00992946.1| putative N6-adenine-specific DNA methylase [Vibrio splendidus
           12B01]
 gi|84375166|gb|EAP92084.1| putative N6-adenine-specific DNA methylase [Vibrio splendidus
           12B01]
          Length = 706

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 43/130 (33%), Gaps = 22/130 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + + ++ + +  L K    S DLIF DPP         +     +  +     D     E
Sbjct: 594 QHQFVQADCLQWLAK-EQGSYDLIFIDPP--------TFSNSKRMDQSFDVQRDHIQLME 644

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                        +R+L+  GT+    +  +       L+ L     N  +  K+ P+  
Sbjct: 645 D-----------LKRLLREEGTIVFSNNKRHFKMDMEGLEELGLKAQN--ISSKTLPLDF 691

Query: 140 FRGRRFQNAH 149
            R +   N  
Sbjct: 692 SRNKHIHNCW 701


>gi|332159158|ref|YP_004424437.1| hypothetical protein PNA2_1518 [Pyrococcus sp. NA2]
 gi|331034621|gb|AEC52433.1| hypothetical protein PNA2_1518 [Pyrococcus sp. NA2]
          Length = 373

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 7/93 (7%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           P  L   ++  S      +LDPF G+GT          +  G ++ ++ I    + I  +
Sbjct: 183 PPRLARIMVNLSEIRKGNVLDPFCGTGTILMELTLQGLNAYGSDINEERIRETRRNIEWL 242

Query: 269 QPLGNIELTVL-------TGKRTEPRVAFNLLV 294
           +   N+    +         K+  PR  F  +V
Sbjct: 243 KREFNVRKYPVLKVCDVRKLKKCFPRTRFTAIV 275


>gi|315427223|dbj|BAJ48836.1| modification methyltransferase [Candidatus Caldiarchaeum
           subterraneum]
 gi|315427256|dbj|BAJ48868.1| modification methyltransferase [Candidatus Caldiarchaeum
           subterraneum]
          Length = 315

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 58/182 (31%), Gaps = 31/182 (17%)

Query: 5   NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG--------- 55
           N +  +  ++ + +   K + G++   +E +  +SVD +   PPY  ++           
Sbjct: 136 NKMIEDVEKHPLTDASAKAMLGDARR-MESVETESVDAVITSPPYLNKIEYTRCYWPEYE 194

Query: 56  ----QLYRPDHSLVDAVTDSWDKFSSFEA--------YDAFTRAWLLACRRVLKPNGTLW 103
                +         ++     + SS E         Y            R+L+P G   
Sbjct: 195 IFFPHISHTGLRSYLSMRPEDVELSSLEEEAPLVARLYFEDMEKVCGEVYRILRPGGAAV 254

Query: 104 VIGS--------YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
           ++                +  + +    ++   +   K     + R R+   + E++I+ 
Sbjct: 255 MVVGGGVFPDRVIQVDVAVSDIAERCGLFVERIVAVNKRVAAVD-RVRKIGESRESIIYM 313

Query: 156 SP 157
             
Sbjct: 314 KK 315


>gi|170761314|ref|YP_001787874.1| O-methyltransferase family protein [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169408303|gb|ACA56714.1| O-methyltransferase family protein [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 218

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 6   SLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
            +A N  +   F+ K KII+G+ + +L+ L  K  D+IF D
Sbjct: 94  EIAKNNIEKYSFKDKIKIIQGDCLEILKNLEDKY-DMIFMD 133


>gi|168180555|ref|ZP_02615219.1| O-methyltransferase family protein [Clostridium botulinum NCTC
           2916]
 gi|182668563|gb|EDT80542.1| O-methyltransferase family protein [Clostridium botulinum NCTC
           2916]
          Length = 218

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 6   SLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
            +A N  +   F+ K KII+G+ + +L+ L  K  D+IF D
Sbjct: 94  EIAKNNIEKYSFKDKIKIIQGDCLEILKDLEDKY-DMIFMD 133


>gi|114773258|ref|ZP_01450493.1| methylation of 50S ribosomal subunit protein L11 (ribosomal protein
           L11 methyltransferase) [alpha proteobacterium HTCC2255]
 gi|114546377|gb|EAU49286.1| methylation of 50S ribosomal subunit protein L11 (ribosomal protein
           L11 methyltransferase) [alpha proteobacterium HTCC2255]
          Length = 292

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 38/108 (35%), Gaps = 7/108 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+ A++         S   IP       + +     G   H T    AL  R 
Sbjct: 95  WEREWMDNFHAMRFGERLWVCPSWREIPEPDAVNVMLDPGLAFGTGTHATT---ALCLRW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           L S +  G  +LD   GSG  G  A KL     +GI++    +     
Sbjct: 152 LDSLSLSGAKVLDFGCGSGILGIAALKLGAADMLGIDIDPQALQATEA 199


>gi|330445603|ref|ZP_08309255.1| hypothetical protein PMSV_529 [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489794|dbj|GAA03752.1| hypothetical protein PMSV_529 [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 414

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 3/75 (4%)

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD--IILDPFFGSGTSGA 239
           ++W IP              + +  + P  +  +IL     P D   +LD F GSGT+  
Sbjct: 37  NEWDIPNTIKELSYLTHSHYRYYG-KFPSVVAGQILEQLPPPSDKHYVLDNFCGSGTTLV 95

Query: 240 VAKKLRRSFIGIEMK 254
            AK       G+++ 
Sbjct: 96  EAKLRGIKSFGLDIS 110


>gi|262405018|ref|ZP_06081570.1| ribosomal protein L11 methyltransferase [Vibrio sp. RC586]
 gi|262348857|gb|EEY97998.1| ribosomal protein L11 methyltransferase [Vibrio sp. RC586]
          Length = 295

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 55/163 (33%), Gaps = 21/163 (12%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P       + +     G   HPT    AL    
Sbjct: 96  WEREWMDNFHPMQFGRRLWICPSWREVPDPQAVNVMLDPGLAFGTGTHPTT---ALCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK---R-------- 264
           L +    G  ++D   GSG     A KL     IGI++    +  +     R        
Sbjct: 153 LDNLDLTGKTVIDFGCGSGILAIAAIKLGAAKVIGIDIDPQALLASKDNAARNGVEDQIE 212

Query: 265 --IASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL 305
             +   QP G +   V+      P    + ++ +GL++ G  L
Sbjct: 213 VYLPKDQPEGLLADVVVANILAGPLRELSPII-KGLLKSGGQL 254


>gi|149927197|ref|ZP_01915454.1| ribosomal protein L11 methyltransferase [Limnobacter sp. MED105]
 gi|149824136|gb|EDM83357.1| ribosomal protein L11 methyltransferase [Limnobacter sp. MED105]
          Length = 304

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 14/87 (16%)

Query: 184 WLIPICSGSERLRNK----------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
           W++P     + + ++           G   HPT    AL  R L      G  +LD   G
Sbjct: 123 WIVPSWHEPQNIDDRINLVLDPGLAFGTGSHPTT---ALCLRWLSEFPLKGQSVLDYGCG 179

Query: 234 SGTSGAVAKKLRR-SFIGIEMKQDYID 259
           SG  G  A KL     IG+++    +D
Sbjct: 180 SGILGIAALKLGASEAIGVDIDPQAVD 206


>gi|260597346|ref|YP_003209917.1| 23S rRNA m(2)G2445 methyltransferase [Cronobacter turicensis z3032]
 gi|260216523|emb|CBA29716.1| Ribosomal RNA large subunit methyltransferase L [Cronobacter
           turicensis z3032]
          Length = 705

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 43/129 (33%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + +S L +   +  DLIF DPP         +     + +      D       
Sbjct: 591 HRLIQADCLSWLAE-SDEQFDLIFIDPP--------TFSNSKRMEETFDVQRDHLR---- 637

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                   +   +R+L+ +GT+    +          L  L   +    + +K+      
Sbjct: 638 -------LMKDLKRLLRRDGTIMFSNNKRGFKMDHEGLAALG--LKAQDITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|240103925|ref|YP_002960234.1| 23S rRNA (uracil-5-)-methyltransferase (rumA) [Thermococcus
           gammatolerans EJ3]
 gi|239911479|gb|ACS34370.1| 23S rRNA (uracil-5-)-methyltransferase (rumA) [Thermococcus
           gammatolerans EJ3]
          Length = 421

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 59/149 (39%), Gaps = 28/149 (18%)

Query: 203 LHPTQKPE------ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           +HP    +       LL R + + T  G+ +LD + G GT G    K   +  G+E+   
Sbjct: 256 IHPNSFFQTNSYALELLLRAVENFTD-GERVLDLYSGVGTFGVYLAKRGFTVEGVEVNPF 314

Query: 257 YIDIATK-----------RIASVQ--PLGNIELTVLTGKRTEPRVAFNLLVERGLIQ--- 300
            +++A +           R+   +  P+G+ +  ++   R   R    LLV+ G+ +   
Sbjct: 315 AVEMANRNTEINGVNAQFRVGRAEETPIGDYDTVIVDPPRKGLRETAELLVKGGIERVVY 374

Query: 301 ----PGQILTNAQGNI-SATVCADGTLIS 324
               P     + + ++  A    D  L+ 
Sbjct: 375 VSCNPKAFRLDYKNHLRKAYRIEDAVLVD 403


>gi|207092704|ref|ZP_03240491.1| putative RNA methylase [Helicobacter pylori HPKX_438_AG0C1]
          Length = 379

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 6/118 (5%)

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP------ICSGSERLRNKDGEKLHP 205
           +I  S           Y      N+      ++ +         +  +     +  K HP
Sbjct: 87  IIGKSKQVIQLENGKKYHLKNKLNDLSGAEWNYFLNSVLCTRYKTSGKDSYAHEIRKEHP 146

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           + KP  L+  I+    K  ++ L      G +   +    R  IG ++   Y +I  K
Sbjct: 147 SPKPPQLMRDIISFLQKRTNLCLIILLEWGGTLLGSSLCNRKAIGFDLSDRYKNIYMK 204



 Score = 40.0 bits (92), Expect = 0.56,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 39/123 (31%), Gaps = 15/123 (12%)

Query: 22  KIIKGNSISVLEK-------LPAKSVDLIFADPPYNLQLN--------GQLYRPDHSLVD 66
           K I G+S+ +L+           +   LI  DPPY   L+         Q      +   
Sbjct: 215 KFICGDSLELLKNNSLMQNLFKNELASLILIDPPYGDMLSRPKTGETLKQKKDTSPTPFT 274

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
            + +     +  E  + F ++   + + + K    +  I           +L       L
Sbjct: 275 NLKNDLGNMNWQEFLEKFKQSVEYSIKYLKKGGHLIVFIKDLQPKGDKDNLLHADIIKTL 334

Query: 127 NDI 129
           N I
Sbjct: 335 NTI 337


>gi|197303930|ref|ZP_03168962.1| hypothetical protein RUMLAC_02667 [Ruminococcus lactaris ATCC
           29176]
 gi|197296898|gb|EDY31466.1| hypothetical protein RUMLAC_02667 [Ruminococcus lactaris ATCC
           29176]
          Length = 176

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 54/159 (33%), Gaps = 26/159 (16%)

Query: 10  NENQNSIFEWKDKII--KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
           N N N   + K KI   +GN+ + L  +  +S+DLI   PPY       + R    +   
Sbjct: 25  NTNLNFTCQEKSKIFTKQGNANN-LSFIKDESIDLICTHPPY-----ADIIRYSKEIPGD 78

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNIFRIGTM-------LQ 119
           ++        +E +            RVLK  G   ++IG       +  +         
Sbjct: 79  ISH-----LKYEDFLKELEKVAKESYRVLKKQGICTFMIGDIRKKGYVLPLGMNSMQKFV 133

Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQN-----AHETLI 153
           +  F +   I+  + N          +      AHE + 
Sbjct: 134 DAGFKLKEIIIKEQHNCKTTEYWDNIEKTFLMLAHEYIF 172


>gi|291166399|gb|EFE28445.1| 50S ribosomal protein L11 methyltransferase [Filifactor alocis ATCC
           35896]
          Length = 313

 Score = 45.0 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 3/121 (2%)

Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLS 214
                +    +Y     A + + +   W     +  E + + D      T + E  ++  
Sbjct: 107 KQEDWEESWKDYFQTFHATDKIVINPVWRHYTPTEGEIVIDMDPGMAFGTGEHETTSMCI 166

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATKRIASVQPLGN 273
            ++  + K  D +LD   GSG    VAKKL  + +  I++    + +A + I      G 
Sbjct: 167 ELIEKNIKYQDNLLDIGCGSGILSIVAKKLGANIVEAIDLDPVAVKVAKENIEYNHLTGQ 226

Query: 274 I 274
           I
Sbjct: 227 I 227


>gi|159905453|ref|YP_001549115.1| methyltransferase small [Methanococcus maripaludis C6]
 gi|159886946|gb|ABX01883.1| methyltransferase small [Methanococcus maripaludis C6]
          Length = 260

 Score = 45.0 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 59/148 (39%), Gaps = 28/148 (18%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ---DYID--IAT 262
           K  ++    +  S KPGDI+ D   GSG    +A +  +    +E+     +Y    +  
Sbjct: 19  KRVSVFKEAVEKSVKPGDIVFDLGTGSGILAMIAARTAKQVYAVELDPITTEYTKENVKE 78

Query: 263 KRIASVQPLGNIELTVLTGKR--------------TEPRVA-FNLLVERGLIQPG----- 302
               +++ + +        ++              TEP+V   N ++E+GL++ G     
Sbjct: 79  NNFKNIKVIEDDAAYYPFSEKADVVIAELLDTGLITEPQVPVLNSIIEKGLLKEGGIIIP 138

Query: 303 QILTNAQGNISATVCADGTLISGTELGS 330
           + + N+   + + +   G +    E+ S
Sbjct: 139 EEVYNSAQIVISKM---GHIYYDEEVTS 163


>gi|148380511|ref|YP_001255052.1| O-methyltransferase family protein [Clostridium botulinum A str.
           ATCC 3502]
 gi|153933640|ref|YP_001384798.1| O-methyltransferase family protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|153937820|ref|YP_001388268.1| O-methyltransferase family protein [Clostridium botulinum A str.
           Hall]
 gi|148289995|emb|CAL84114.1| putative O-methyltransferase [Clostridium botulinum A str. ATCC
           3502]
 gi|152929684|gb|ABS35184.1| O-methyltransferase family protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|152933734|gb|ABS39233.1| O-methyltransferase family protein [Clostridium botulinum A str.
           Hall]
          Length = 218

 Score = 45.0 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 6   SLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
            +A N  +   F+ K KII+G+ + +L+ L  K  D+IF D
Sbjct: 94  EIAKNNIEKYSFKDKIKIIQGDCLEILKDLEDKY-DMIFMD 133


>gi|75908409|ref|YP_322705.1| hypothetical protein Ava_2190 [Anabaena variabilis ATCC 29413]
 gi|75702134|gb|ABA21810.1| Protein of unknown function DUF1156 [Anabaena variabilis ATCC
           29413]
          Length = 792

 Score = 45.0 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 58/157 (36%), Gaps = 10/157 (6%)

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
           I     + +  +  RR   A   +++AS       +  +    + A +  + R   +I  
Sbjct: 27  IRHGHPSTLHLWWARRPLAACRAVLFASLVDDPSSH-PDQFPTEEAQKQERERLFEIIEQ 85

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
               E + N++  +    +        IL S+      +LDPF G G+    A++L    
Sbjct: 86  LVKWENVNNQEVLEKAKAE--------ILKSTNNNPPPVLDPFCGGGSIPLEAQRLGLEA 137

Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
            G ++    + + TK +  + P    +  V    R +
Sbjct: 138 HGSDINPVAV-LITKALIEIPPKFANQPPVNPESRKK 173


>gi|326204499|ref|ZP_08194356.1| DNA methylase N-4/N-6 domain protein [Clostridium papyrosolvens DSM
           2782]
 gi|325985292|gb|EGD46131.1| DNA methylase N-4/N-6 domain protein [Clostridium papyrosolvens DSM
           2782]
          Length = 850

 Score = 45.0 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 6/111 (5%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP--TQKPEALLSRIL 217
               +   +        D +  +  + P  +     +N      H   T+ P   + R +
Sbjct: 37  CPNPFINEFIEKSGTQYDEENDNYNVEPYTADVSEGKNDPIYNAHSYHTKVPHKAIMRYI 96

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLR----RSFIGIEMKQDYIDIATKR 264
           +  TKPGDI+ D F G+G +G  ++          + IE     I    +R
Sbjct: 97  LHYTKPGDIVFDGFCGTGMTGVASQMCGNPDSLFKLSIEQDMKNIRWGARR 147



 Score = 43.4 bits (101), Expect = 0.049,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 16/111 (14%)

Query: 16  IFEWKDKI-IKGNSI------SVLEKLPAKSVDLIFADPPYNLQLNG-QLYRPDHSLVDA 67
           +  + +K     + I      + +  +   S+D IF DPP+   L   +L     + +  
Sbjct: 431 VENYINKTNYNDDCIISCQSTTSMSNINDNSIDYIFTDPPFGENLMYSELNFLWEAWLKV 490

Query: 68  VTDSWD-------KFSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHN 110
            T++         +  +   Y        +   R+LKP   +     +  N
Sbjct: 491 FTNNRHEAIMNKVQNKTLNEYQDLMEKCFMENYRILKPGRWMTVEFHNSQN 541


>gi|270261226|ref|ZP_06189499.1| hypothetical protein SOD_a04510 [Serratia odorifera 4Rx13]
 gi|270044710|gb|EFA17801.1| hypothetical protein SOD_a04510 [Serratia odorifera 4Rx13]
          Length = 706

 Score = 45.0 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 36/113 (31%), Gaps = 20/113 (17%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++I  + +S L     +  D+IF DPP         +     + +   
Sbjct: 580 NLRVNGLTGKQHRLIHADCLSWLHN-ADEQFDVIFIDPP--------TFSNSKRMENTFD 630

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
              D               +   +R+L+ NGT+    +          L  L 
Sbjct: 631 VQRDHL-----------VLMQDLKRLLRRNGTIMFSNNKRGFQMDMAGLSELG 672


>gi|237813872|ref|YP_002898323.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           MSHR346]
 gi|237503463|gb|ACQ95781.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           MSHR346]
          Length = 302

 Score = 45.0 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 12/130 (9%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L    L  + +PG  +LD   GSG    +AKK       GI++    +
Sbjct: 147 GTGSHPTTR---LCMEWLEQTVQPGQTVLDYGCGSGILAILAKKCGAGRVTGIDIDPQAV 203

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + A  R  S +   ++  ++       P   F+++V   L  P +++ +    +++ V  
Sbjct: 204 EAA--RHNSERNRADVTYSLPDD---CPDGEFDIVVANILSNPLKLMASM---LASKVKP 255

Query: 319 DGTLISGTEL 328
            G +     L
Sbjct: 256 GGRIALSGVL 265


>gi|299065664|emb|CBJ36837.1| Ribosomal protein L11 methyltransferase [Ralstonia solanacearum
           CMR15]
          Length = 298

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 12/130 (9%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L    L    +PG+  LD   GSG    VAKKL     +G+++  + +
Sbjct: 145 GTGSHPTTR---LCMEWLEQHVQPGERTLDYGCGSGILAIVAKKLGTGETVGVDIDPNAV 201

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + +  R  + +   N      +     P   F+L+V   L  P   L      + A V  
Sbjct: 202 EAS--RYNAER---NRVEAGFSLPDDAPEGTFDLVVANILSNP---LKLMAAMLCARVRP 253

Query: 319 DGTLISGTEL 328
            G L+    L
Sbjct: 254 GGRLVLSGVL 263


>gi|226949911|ref|YP_002805002.1| O-methyltransferase family protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|226842590|gb|ACO85256.1| O-methyltransferase family protein [Clostridium botulinum A2 str.
           Kyoto]
          Length = 218

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 6   SLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
            +A N  +   F+ K KII+G+ + +L+ L  K  D+IF D
Sbjct: 94  EIAKNNIEKYSFKDKIKIIQGDCLEILKDLEDKY-DMIFMD 133


>gi|149921487|ref|ZP_01909939.1| putative RNA methylase [Plesiocystis pacifica SIR-1]
 gi|149817690|gb|EDM77157.1| putative RNA methylase [Plesiocystis pacifica SIR-1]
          Length = 399

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 58/160 (36%), Gaps = 23/160 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPD-------------HSLVDA 67
           ++  G++ +    + ++SVDLI   PPY N+    Q YR                 +   
Sbjct: 189 RVRLGDARAT--GVESRSVDLIVTSPPYVNVYNYHQKYRGSVESMGWDVLAAARSEIGSN 246

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI-----GTMLQNLN 122
                ++  +   +            RVLKP G+  V+    ++ R      G ML  + 
Sbjct: 247 RKHRGNRVLTVIQFCMDMADVFAEMERVLKPGGSAVVVVGRESMVRKTRFFNGEMLAEVA 306

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
                  +  +   +  F  R  Q+ +E ++  S   ++K
Sbjct: 307 STATGLKLCLRQERV--FLNRFGQHIYEDILHLSRPRRSK 344



 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           Q    L+  IL   +     +LDPF GSGT      +     +G+E+      +A
Sbjct: 24  QFSPQLVEAILGFYSDGATTVLDPFVGSGTVLLETARRGLVPLGVEVNPAAYHLA 78


>gi|307250043|ref|ZP_07532007.1| Type III restriction-modification system methyltransferase
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|307252390|ref|ZP_07534286.1| Type III restriction-modification system methyltransferase
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306857903|gb|EFM89995.1| Type III restriction-modification system methyltransferase
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306859982|gb|EFM91999.1| Type III restriction-modification system methyltransferase
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
          Length = 153

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 17  FEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN 54
            + ++  I+G ++ VL+ L      S+ +I+ DPPYN   +
Sbjct: 63  EQTQNIFIEGENLEVLKALQKSYFNSIKMIYIDPPYNTGND 103


>gi|304558626|gb|ADM41290.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Edwardsiella tarda
           FL6-60]
          Length = 663

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 43/140 (30%), Gaps = 22/140 (15%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++++ + +S L     K  DLIF DPP          +      D   
Sbjct: 537 NLRLNGLTGRQHRLVQADCLSYLHHCEDK-FDLIFIDPP-----TFSNSKRMEGTFDVQR 590

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
           D  D                    R+L+P GT+    +          L  L   +    
Sbjct: 591 DHLDLMRDL--------------ARILRPGGTIMFSNNKRGFKMDLAGLAQLG--LQAQE 634

Query: 130 VWRKSNPMPNFRGRRFQNAH 149
           +  ++      R R+  N  
Sbjct: 635 ITERTLSADFARNRQIHNCW 654


>gi|269138613|ref|YP_003295313.1| putative RNA methylase [Edwardsiella tarda EIB202]
 gi|267984273|gb|ACY84102.1| putative RNA methylase [Edwardsiella tarda EIB202]
          Length = 705

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 43/140 (30%), Gaps = 22/140 (15%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++++ + +S L     K  DLIF DPP          +      D   
Sbjct: 579 NLRLNGLTGRQHRLVQADCLSYLHHCEDK-FDLIFIDPP-----TFSNSKRMEGTFDVQR 632

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
           D  D                    R+L+P GT+    +          L  L   +    
Sbjct: 633 DHLDLMRDL--------------ARILRPGGTIMFSNNKRGFKMDLAGLAQLG--LQAQE 676

Query: 130 VWRKSNPMPNFRGRRFQNAH 149
           +  ++      R R+  N  
Sbjct: 677 ITERTLSADFARNRQIHNCW 696


>gi|254483404|ref|ZP_05096634.1| Putative RNA methylase family UPF0020 [marine gamma proteobacterium
           HTCC2148]
 gi|214036388|gb|EEB77065.1| Putative RNA methylase family UPF0020 [marine gamma proteobacterium
           HTCC2148]
          Length = 579

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 48/145 (33%), Gaps = 24/145 (16%)

Query: 7   LAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           L  N   N + E   +I++ N +  LEK    S DLI  DPP              S   
Sbjct: 456 LRKNLAHNGLGESHHEIVRANCLQWLEK-DEGSYDLILLDPP------------SFSNSK 502

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
            + +S+D               + A    L+P G L+   +    F++   LQ +     
Sbjct: 503 NMDESFDVQRDH-------AELVRAAMSHLRPGGVLY-FSNNRRGFKLDESLQQV---FS 551

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHET 151
              +   +      R R+     E 
Sbjct: 552 CKDITNATLDQDFQRNRKVHCCWEI 576


>gi|56475783|ref|YP_157372.1| methylation subunit, type III restriction-modification system
           [Aromatoleum aromaticum EbN1]
 gi|56311826|emb|CAI06471.1| probable methylation subunit, type III restriction-modification
           system [Aromatoleum aromaticum EbN1]
          Length = 1121

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 12/113 (10%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSER-----LRNKDGEKLHPTQKPEALLSRILV-SST 221
           Y   +  +E V   ++W+    S +E           G       K    +   L  S  
Sbjct: 758 YYKFRPGSEGVLPPTNWIDAKYSATEHGTGVLKHFFIGTCPFTYPKSIYAVEDCLRVSGM 817

Query: 222 KPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYIDIATKRIASV 268
                +LD F GSGT+G     L       R ++ IEM   +  +   RI  +
Sbjct: 818 GKSHFVLDYFGGSGTTGHAVINLNREDGGRRKYVLIEMGAYFDTVLRPRIQKI 870



 Score = 36.9 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 20/137 (14%)

Query: 23  IIKGNSISVL----EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           ++   +   L     +L  + +  ++ DPPYN       Y+  +                
Sbjct: 509 LLHAENFQALNFAHSRL-NRQIKAVYIDPPYNTDAGPIAYKNGYRSSS------------ 555

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML-QNLNFWILNDIVWRKSNPM 137
             + A     L A   ++  +G L      +    +  +L Q      L   +  + NP 
Sbjct: 556 --WCALIADRLAATPPLMSIDGVLCATIDDYQQRELSYLLEQQFGQDSLLGTIAIRINPS 613

Query: 138 PNFRGRRFQNAHETLIW 154
                     AHE  I+
Sbjct: 614 GRPVPSGLAQAHEYAIF 630


>gi|153938794|ref|YP_001391853.1| O-methyltransferase family protein [Clostridium botulinum F str.
           Langeland]
 gi|152934690|gb|ABS40188.1| O-methyltransferase family protein [Clostridium botulinum F str.
           Langeland]
 gi|295319879|gb|ADG00257.1| O-methyltransferase family protein [Clostridium botulinum F str.
           230613]
          Length = 218

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 6   SLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
            +A N  +   F+ K KII+G+ + +L+ L  K  D+IF D
Sbjct: 94  EIAKNNIEKYSFKDKIKIIQGDCLEILKNLEDKY-DMIFMD 133


>gi|283784768|ref|YP_003364633.1| RNA methylase [Citrobacter rodentium ICC168]
 gi|282948222|emb|CBG87789.1| putative RNA methylase [Citrobacter rodentium ICC168]
          Length = 702

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + +  L +   +  DLIF DPP         +     + DA     D     + 
Sbjct: 591 HRLIQADCLGWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHLRLMQD 641

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                       +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 642 -----------LKRLLRQGGTIMFSNNKRGFRMDLDGLAALG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|322806893|emb|CBZ04463.1| O-methyltransferase family protein [Clostridium botulinum H04402
           065]
          Length = 218

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 6   SLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
            +A N  +   F+ K KII+G+ + +L+ L  K  D+IF D
Sbjct: 94  EIAKNNIEKYSFKDKIKIIQGDCLEILKDLDDKY-DMIFMD 133


>gi|258509104|ref|YP_003171855.1| cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus
           rhamnosus GG]
 gi|257149031|emb|CAR88004.1| Cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus
           rhamnosus GG]
 gi|259650393|dbj|BAI42555.1| cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus
           rhamnosus GG]
          Length = 393

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 59/176 (33%), Gaps = 14/176 (7%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGSGT-SGAVA 241
           WL P  + S        + L   Q  +  +  IL          +LD   G GT     A
Sbjct: 129 WLDPTLTYSCAYFENWDDDLETAQLNK--IDHILRKLNPQPGRTLLDIGCGWGTLMLRAA 186

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLI-Q 300
           K      +GI + ++   + + RI + + L ++   +    R   R  F+ +   G+   
Sbjct: 187 KTYHLHVVGITLSKEQFKLVSDRIEA-EHLNDVAEILYMDYRELDREPFDYITSVGMFEH 245

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLG 356
            G+          A +  D  +        IH +  +  G+   N W   Y    G
Sbjct: 246 VGKENLEEYFKDVAKLLKDDGVAL------IHGITRQQGGA--VNAWINKYIFPDG 293


>gi|241664206|ref|YP_002982566.1| ribosomal protein L11 methyltransferase [Ralstonia pickettii 12D]
 gi|240866233|gb|ACS63894.1| ribosomal protein L11 methyltransferase [Ralstonia pickettii 12D]
          Length = 298

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 50/130 (38%), Gaps = 12/130 (9%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L    L    +PG+  LD   GSG    VAKKL     +G+++  + +
Sbjct: 145 GTGSHPTTR---LCMEWLEQHVQPGERTLDYGCGSGILAIVAKKLGAGETVGVDIDPNAV 201

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + +  R  + +   N            P   F+L+V   L  P   L      + A V  
Sbjct: 202 EAS--RYNAER---NHVEATFALPDDAPEGTFDLVVANILSNP---LKLMAAMLCARVRP 253

Query: 319 DGTLISGTEL 328
            G LI    L
Sbjct: 254 GGRLILSGVL 263


>gi|229492100|ref|ZP_04385910.1| putative modification methylase [Rhodococcus erythropolis SK121]
 gi|229320997|gb|EEN86808.1| putative modification methylase [Rhodococcus erythropolis SK121]
          Length = 440

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 22/57 (38%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
            G    P +    +    L +       ILDPF GSGT+   A  L  S   +E+  
Sbjct: 34  HGLHRFPAKYIPQVPRWALDAYATAESRILDPFAGSGTTNVEAASLGYSSAALEINP 90


>gi|149910033|ref|ZP_01898681.1| ribosomal protein L11 methyltransferase [Moritella sp. PE36]
 gi|149806901|gb|EDM66862.1| ribosomal protein L11 methyltransferase [Moritella sp. PE36]
          Length = 293

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 58/180 (32%), Gaps = 14/180 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    AL    
Sbjct: 95  WEREWMENFHPMQFGERLWICPSWRPVPDENAVNVMLDPGLAFGTGTHPTT---ALCLEW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG     A KL  +  IG+++    I  +     + +  G  +
Sbjct: 152 LDGQDLTGKTVVDFGCGSGILAIAALKLGAKRVIGVDIDPQAILASRD---NAERNGVAD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVG 335
              L     +P      +V   ++     L    G I + +   G L     L   H+  
Sbjct: 209 QIELYLPADQPDGIKADIVVANILAA--PLRELSGLIISFLKPGGKLALSGILD--HQAA 264


>gi|283956745|ref|ZP_06374221.1| hypothetical protein C1336_000290020 [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283791720|gb|EFC30513.1| hypothetical protein C1336_000290020 [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 337

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 10/145 (6%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG--QLYRPDHSLVDAVTDS 71
           N +  +  K+   + I +L+K+    VDLI+ DPPY   +N     Y P   +    T  
Sbjct: 197 NGLKNFSHKL---DCIKMLDKI--AKVDLIYIDPPYPSTMNNYFNFYGPYDKIFKEETKQ 251

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
              F++   +    +                    S  N   I T + NL    LN  ++
Sbjct: 252 CTDFTNKNTFLQNLKLIFEKAIGKTTYIAMSLNNQSKPNPNEIITSVSNL---TLNFFIY 308

Query: 132 RKSNPMPNFRGRRFQNAHETLIWAS 156
           +K +          +  +E ++   
Sbjct: 309 QKPHIYKVTGKENKKQNYEIVLIFK 333


>gi|56476248|ref|YP_157837.1| ribosomal protein L11 methyltransferase [Aromatoleum aromaticum
           EbN1]
 gi|56312291|emb|CAI06936.1| Ribosomal protein L11 methyltransferase [Aromatoleum aromaticum
           EbN1]
          Length = 301

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 49/130 (37%), Gaps = 12/130 (9%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L    L  + +PGD +LD   GSG  G  A +L     +GI++    +
Sbjct: 143 GTGSHPTTR---LCLEWLCDAVQPGDSVLDYGCGSGILGIAAVRLGAGDVLGIDIDDKAL 199

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D A           N     L   R      F+++V   L  P  +L      ++A V  
Sbjct: 200 DAAHD-----NAARNHVALRLQHSRQPLDARFDVVVANILTNPLCVLAPL---LAARVAP 251

Query: 319 DGTLISGTEL 328
            G +     L
Sbjct: 252 GGRIALSGVL 261


>gi|331695069|ref|YP_004331308.1| DNA methylase N-4/N-6 domain-containing protein [Pseudonocardia
           dioxanivorans CB1190]
 gi|326949758|gb|AEA23455.1| DNA methylase N-4/N-6 domain protein [Pseudonocardia dioxanivorans
           CB1190]
          Length = 297

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 25/42 (59%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           P A+ +  +   ++PGD++LDP  G+GT+   A +  R  +G
Sbjct: 35  PPAVAAHAIALYSRPGDLVLDPDCGAGTALVEALRAGRHALG 76


>gi|199597472|ref|ZP_03210902.1| Cyclopropane fatty acid synthase related methyltransferase
           [Lactobacillus rhamnosus HN001]
 gi|199591732|gb|EDY99808.1| Cyclopropane fatty acid synthase related methyltransferase
           [Lactobacillus rhamnosus HN001]
          Length = 393

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 59/176 (33%), Gaps = 14/176 (7%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGSGT-SGAVA 241
           WL P  + S        + L   Q  +  +  IL          +LD   G GT     A
Sbjct: 129 WLDPTLTYSCAYFENWDDDLETAQLNK--IDHILRKLNPQPGRTLLDIGCGWGTLMLRAA 186

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLI-Q 300
           K      +GI + ++   + + RI + + L ++   +    R   R  F+ +   G+   
Sbjct: 187 KTYHLHVVGITLSKEQFKLVSDRIEA-EHLNDVAEILYMDYRELDREPFDYITSVGMFEH 245

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLG 356
            G+          A +  D  +        IH +  +  G+   N W   Y    G
Sbjct: 246 VGKENLEEYFKDVAKLLKDDGVAL------IHGITRQQGGA--VNAWINKYIFPDG 293


>gi|331269721|ref|YP_004396213.1| O-methyltransferase, family 3 [Clostridium botulinum BKT015925]
 gi|329126271|gb|AEB76216.1| O-methyltransferase, family 3 [Clostridium botulinum BKT015925]
          Length = 218

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 5/48 (10%)

Query: 3   QKNSLAINENQNSIFEW----KDKIIKGNSISVLEKLPAKSVDLIFAD 46
           +++   I+  +N+I ++    K KI++G+ + +L  +  +  DLIF D
Sbjct: 87  ERDENMISIAKNNIVKYGFNDKIKILQGDCLEILPTI-DEQFDLIFMD 133


>gi|328696636|ref|XP_001943731.2| PREDICTED: tRNA guanosine-2'-O-methyltransferase TRM11 homolog
           [Acyrthosiphon pisum]
          Length = 466

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           D++LDPF GSG+    A K     IG ++ 
Sbjct: 211 DLVLDPFVGSGSLLVAAAKFGGHVIGTDID 240


>gi|304560220|gb|ADM42884.1| hypothetical protein ETAF_2782 [Edwardsiella tarda FL6-60]
          Length = 494

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 4/82 (4%)

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
            NE   MR         GS         + +  +  + L+SR           ILDPF G
Sbjct: 84  KNEKSFMRLQSTFSGGKGSPMHDWYPYLEGYSPEFVKCLISRF----APKAKTILDPFCG 139

Query: 234 SGTSGAVAKKLRRSFIGIEMKQ 255
           SGT+  V+     +    E+  
Sbjct: 140 SGTTAIVSVLEGLNNYYCEVNP 161


>gi|187930101|ref|YP_001900588.1| ribosomal protein L11 methyltransferase [Ralstonia pickettii 12J]
 gi|226710102|sp|B2UCS1|PRMA_RALPJ RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|187726991|gb|ACD28156.1| ribosomal protein L11 methyltransferase [Ralstonia pickettii 12J]
          Length = 298

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 49/130 (37%), Gaps = 12/130 (9%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L    L     PG+  LD   GSG    VAKKL     +G+++  + +
Sbjct: 145 GTGSHPTTR---LCMEWLEQHVHPGERTLDYGCGSGILAIVAKKLGAGETVGVDIDPNAV 201

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + +  R  + +   N            P   F+L+V   L  P   L      + A V  
Sbjct: 202 EAS--RYNAER---NHVEATFALPDDAPEGTFDLVVANILSNP---LKLMAAMLCARVRP 253

Query: 319 DGTLISGTEL 328
            G LI    L
Sbjct: 254 GGRLILSGVL 263


>gi|326335108|ref|ZP_08201305.1| modification methylase HindIII [Capnocytophaga sp. oral taxon 338
          str. F0234]
 gi|325692638|gb|EGD34580.1| modification methylase HindIII [Capnocytophaga sp. oral taxon 338
          str. F0234]
          Length = 63

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
          KI   +    L +L  +S+D +  DPPY +      +  D    +   D+
Sbjct: 7  KIYNKSCY-GLSELENESIDALITDPPYGISYQNHYWDKDLPKREIWEDT 55


>gi|156740095|ref|YP_001430224.1| hypothetical protein Rcas_0068 [Roseiflexus castenholzii DSM 13941]
 gi|156231423|gb|ABU56206.1| hypothetical protein Rcas_0068 [Roseiflexus castenholzii DSM 13941]
          Length = 464

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
            +LDPF G GT+   + +      GIE+   +  +A++             T+L+  RT 
Sbjct: 66  HVLDPFAGIGTTLVESLRRGYHVTGIEINP-FAALASR--VKCSAFTIEPDTLLSAIRTF 122

Query: 286 PRVA 289
            R A
Sbjct: 123 EREA 126



 Score = 39.6 bits (91), Expect = 0.78,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 19/34 (55%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG 55
           ++I+G+S  + + +   SVD++   PPY    + 
Sbjct: 260 RVIEGDSRLMPQMVKESSVDIVITSPPYLNNYHY 293


>gi|221310099|ref|ZP_03591946.1| YpiP [Bacillus subtilis subsp. subtilis str. 168]
 gi|221314420|ref|ZP_03596225.1| YpiP [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221319343|ref|ZP_03600637.1| YpiP [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221323618|ref|ZP_03604912.1| YpiP [Bacillus subtilis subsp. subtilis str. SMY]
 gi|255767478|ref|NP_390068.2| methyltransferase [Bacillus subtilis subsp. subtilis str. 168]
 gi|226693591|sp|P54171|YPIP_BACSU RecName: Full=Uncharacterized protein ypiP
 gi|225185105|emb|CAB14103.2| putative methyltransferase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 257

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 18/28 (64%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADP 47
           + ++  G+    +++LP  SVD+++ DP
Sbjct: 155 RIQVKNGDCFEHIKQLPDNSVDVVYFDP 182


>gi|145297996|ref|YP_001140837.1| ribosomal protein L11 methyltransferase [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|166223393|sp|A4SJL7|PRMA_AERS4 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|142850768|gb|ABO89089.1| ribosomal protein L11 methyltransferase [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 292

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 7/106 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  ++  ++         S   +P       + +     G   HPT    AL  + 
Sbjct: 93  WVREWMDHFHPMQFGERLWICPSWRDVPNPDAVNVMLDPGLAFGTGTHPTT---ALCLQW 149

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIA 261
           L      G  ++D   GSG  G  A KL     IGI++    I  +
Sbjct: 150 LDGLDLAGKTVVDFGCGSGILGIAALKLGAARVIGIDIDPQAIQAS 195


>gi|1256637|gb|AAA96631.1| putative [Bacillus subtilis subsp. subtilis str. 168]
          Length = 172

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 18/28 (64%)

Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADP 47
          + ++  G+    +++LP  SVD+++ DP
Sbjct: 70 RIQVKNGDCFEHIKQLPDNSVDVVYFDP 97


>gi|307825726|ref|ZP_07655943.1| rRNA (guanine-N(2)-)-methyltransferase [Methylobacter tundripaludum
           SV96]
 gi|307733303|gb|EFO04163.1| rRNA (guanine-N(2)-)-methyltransferase [Methylobacter tundripaludum
           SV96]
          Length = 774

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 27/121 (22%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVL---EKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           K ++A+N N     E   + I+ + +  L    +L  +  DLIF DPP            
Sbjct: 650 KKNMALNAN-----EGAHEFIQADCLEWLAAEAQLANRHYDLIFLDPP---------TFS 695

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           +   +DAV D  +               +     +L P G L+   ++         L +
Sbjct: 696 NSKRMDAVFDIQNDHVQL----------INNAISLLSPGGVLYFSTNFRRFKIDKQALSD 745

Query: 121 L 121
           L
Sbjct: 746 L 746


>gi|213022570|ref|ZP_03337017.1| type III restriction-modification system StyLTI enzyme mod
           [Salmonella enterica subsp. enterica serovar Typhi str.
           404ty]
          Length = 136

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 14/92 (15%)

Query: 44  FADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE--------------AYDAFTRAWL 89
           + DPPYN   +G +Y       D         +  E              A+ +F    L
Sbjct: 1   YIDPPYNTGSDGFVYPDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRL 60

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
              R++LK  G +++    +    +  M+  +
Sbjct: 61  FLARKLLKDTGFIFISIDDNEYANLKLMMDEI 92


>gi|117924997|ref|YP_865614.1| 23S rRNA m(2)G2445 methyltransferase [Magnetococcus sp. MC-1]
 gi|229560190|sp|A0L8B5|RLML_MAGSM RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|117608753|gb|ABK44208.1| 23S rRNA m(2)G-2445 methyltransferase [Magnetococcus sp. MC-1]
          Length = 722

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 26/136 (19%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           E + + IK N +  +     ++ DLIF DPP         +    S++++     D+ + 
Sbjct: 608 EHQHRFIKANCMQWIAT-TDQTFDLIFLDPP--------TFSNSKSMLESFDIQRDQVT- 657

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP- 136
                      +    R+L P+G L+   +    F++   L +     + +I  +  +P 
Sbjct: 658 ----------LIGGVARLLNPDGVLY-FSTNRKKFKLEQDLLSAQNLHMEEITQQTLDPD 706

Query: 137 ----MPNFRGRRFQNA 148
                P  R  R   A
Sbjct: 707 FHREPPIHRCWRITCA 722


>gi|159044466|ref|YP_001533260.1| putative modification methylase [Dinoroseobacter shibae DFL 12]
 gi|157912226|gb|ABV93659.1| putative modification methylase [Dinoroseobacter shibae DFL 12]
          Length = 482

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
              +ILDPF GSGT+  VA +LR   +G ++  
Sbjct: 115 EDGLILDPFSGSGTTPLVAGELRLRGLGFDVSP 147


>gi|258514700|ref|YP_003190922.1| hypothetical protein Dtox_1426 [Desulfotomaculum acetoxidans DSM
           771]
 gi|257778405|gb|ACV62299.1| hypothetical protein Dtox_1426 [Desulfotomaculum acetoxidans DSM
           771]
          Length = 432

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 25/43 (58%)

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           I+LDP+ GSGT+  VA  L  +  G ++    + +A  ++ +V
Sbjct: 53  IVLDPWNGSGTTTLVASILGYANYGFDINPVMVIVAKAKLYNV 95



 Score = 36.1 bits (82), Expect = 9.8,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 15/35 (42%)

Query: 37  AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
             SVD I   PPY  +++  +Y      +   TD 
Sbjct: 248 NNSVDFIITSPPYCTRIDYAVYTKVELSLLGYTDQ 282


>gi|148656375|ref|YP_001276580.1| hypothetical protein RoseRS_2251 [Roseiflexus sp. RS-1]
 gi|148568485|gb|ABQ90630.1| hypothetical protein RoseRS_2251 [Roseiflexus sp. RS-1]
          Length = 393

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            P +    +  + + + T PG  +LDP  GSGT   VA +     IG ++    + +  
Sbjct: 10  FPARMAPHIALKAIEALT-PGSTVLDPMMGSGTVVRVAAEAGHRAIGRDVDPLAVLMTR 67


>gi|229492094|ref|ZP_04385904.1| putative modification methylase [Rhodococcus erythropolis SK121]
 gi|229320991|gb|EEN86802.1| putative modification methylase [Rhodococcus erythropolis SK121]
          Length = 454

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 29/69 (42%)

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           P  S     R      LH   K     S  L+ + + G+ ILDPF GSG+    A +L  
Sbjct: 36  PELSSLVHWRGNQDLPLHRWYKYREGYSPALIDAFQLGENILDPFSGSGSIMVGAAELGL 95

Query: 247 SFIGIEMKQ 255
              GI++  
Sbjct: 96  RSTGIDVNP 104



 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 18  EWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG 55
           +WK+ KI  G++  ++ KL + S D +   PPY  + + 
Sbjct: 259 KWKEQKIFTGSANRIMPKLDSGSFDSVVFSPPYANRFDY 297


>gi|212709822|ref|ZP_03317950.1| hypothetical protein PROVALCAL_00870 [Providencia alcalifaciens DSM
           30120]
 gi|212687633|gb|EEB47161.1| hypothetical protein PROVALCAL_00870 [Providencia alcalifaciens DSM
           30120]
          Length = 702

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
           N   N +   + ++++ + ++ L     +  DLIF DPP
Sbjct: 579 NLQANQLTGRQHRLMQADCLNWLAN-ADEQFDLIFIDPP 616


>gi|323139913|ref|ZP_08074937.1| ParB domain protein nuclease [Methylocystis sp. ATCC 49242]
 gi|322394830|gb|EFX97407.1| ParB domain protein nuclease [Methylocystis sp. ATCC 49242]
          Length = 273

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 20  KDKIIKGNSIS--VLEKLPAKS-VDLIFADPPYNLQLNGQLYR 59
           K ++I G++    V E+  A S   L   DPPYN+++NG +  
Sbjct: 216 KHRLICGDARDPKVYERAMAGSLAQLAVCDPPYNVKINGHVSG 258


>gi|229553091|ref|ZP_04441816.1| possible cyclopropane-fatty-acyl-phospholipid synthase
           [Lactobacillus rhamnosus LMS2-1]
 gi|258540294|ref|YP_003174793.1| cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus
           rhamnosus Lc 705]
 gi|229313588|gb|EEN79561.1| possible cyclopropane-fatty-acyl-phospholipid synthase
           [Lactobacillus rhamnosus LMS2-1]
 gi|257151970|emb|CAR90942.1| Cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus
           rhamnosus Lc 705]
          Length = 393

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 58/176 (32%), Gaps = 14/176 (7%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGSGT-SGAVA 241
           WL P  + S        + L   Q  +  +  IL          +LD   G GT     A
Sbjct: 129 WLDPTLTYSCAYFENWDDDLETAQLNK--IDHILRKLNPQPGRTLLDIGCGWGTLMLRAA 186

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLI-Q 300
           K      +GI + ++   + + RI + + L ++   +    R   R  F+ +   G+   
Sbjct: 187 KTYHLHVVGITLSKEQFKLVSDRIEA-EHLNDVAEILYMDYRELDREPFDYITSVGMFEH 245

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLG 356
            G+          A +  D  +        IH +  +  G    N W   Y    G
Sbjct: 246 VGKENLEEYFKDVAKLLKDDGVAL------IHGITRQQGG--AVNAWINKYIFPDG 293


>gi|17547507|ref|NP_520909.1| ribosomal protein L11 methyltransferase [Ralstonia solanacearum
           GMI1000]
 gi|38605396|sp|Q8XVP2|PRMA_RALSO RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|17429810|emb|CAD16495.1| probable ribosomal protein l11 methyltransferase (l11 mtase)
           [Ralstonia solanacearum GMI1000]
          Length = 298

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 12/130 (9%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L    L    +PG+  LD   GSG    VAKKL     +G+++  + +
Sbjct: 145 GTGSHPTTR---LCMEWLEQHVQPGERTLDYGCGSGILAIVAKKLGTGETVGVDIDPNAV 201

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + +     + +         L G    P   F+L+V   L  P +++ +    + A V  
Sbjct: 202 EASR---YNAERNRVEAGFSLPG--DAPEGTFDLVVANILSNPLKLMASM---LCARVRP 253

Query: 319 DGTLISGTEL 328
            G L+    L
Sbjct: 254 GGRLVLSGVL 263


>gi|300725812|ref|ZP_07059280.1| DNA methylase N-4/N-6 domain protein [Prevotella bryantii B14]
 gi|299776912|gb|EFI73454.1| DNA methylase N-4/N-6 domain protein [Prevotella bryantii B14]
          Length = 1028

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 59/149 (39%), Gaps = 24/149 (16%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLV 65
           I+E  N +      +I   +   LE L     + V  ++ DPPYN   +G  Y+      
Sbjct: 458 IDEQTNGL------LINSENFQALELLQEKYRERVKCVYIDPPYNTGSDGFAYK------ 505

Query: 66  DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
           D   DS        ++       LL  ++++  + ++ +  + + +F    +L ++    
Sbjct: 506 DQYKDS--------SWLTMMENRLLIVKQLMTLDSSISISINENELFNSKCLLDSMFSKY 557

Query: 126 LNDIVWRKSNPMPNFRGRRFQN-AHETLI 153
           L     +  +     +G +  +  +E+L+
Sbjct: 558 LTTFSVKVRHEDRILKGDKDFHEVYESLL 586



 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 44/126 (34%), Gaps = 10/126 (7%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDW--LIPICSGSERLRNKDGEKLHPTQKPE 210
            + +PS ++     +Y      N    +   +   +          ++ G      +KP 
Sbjct: 700 YFWTPSVESGRKNGDYYQGAPINRKDTIEIPYPNYVDFEKAFNDATDEGGVSFRNGKKPI 759

Query: 211 ALLSRIL---VSSTKPGDIILDPFFGSGTSGAVAKKL-----RRSFIGIEMKQDYIDIAT 262
           + +  +L           +I+D F GS ++G    ++      R ++  ++   + D+  
Sbjct: 760 SFIQHVLSLQNIGKDKNALIIDFFAGSASTGHAVIEMNKDQGNRKYLLSQVGDIFDDVTK 819

Query: 263 KRIASV 268
            R+   
Sbjct: 820 PRMERT 825


>gi|51980187|ref|YP_077254.1| Cytosine methylase, similar to PspGI methylase [Sulfolobus virus
           STSV1]
 gi|51890320|emb|CAH04244.1| Cytosine methylase, similar to PspGI methylase [Sulfolobus virus
           STSV1]
          Length = 412

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 28/52 (53%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +P +    +++ IL +  KPG  + DPF G GT G V++    S++  E+  
Sbjct: 38  YPAKFIPQVVAYILKTYCKPGMKVFDPFAGYGTVGVVSRVYGHSYVLWELNP 89


>gi|218441684|ref|YP_002380013.1| hypothetical protein PCC7424_4787 [Cyanothece sp. PCC 7424]
 gi|218174412|gb|ACK73145.1| conserved hypothetical protein [Cyanothece sp. PCC 7424]
          Length = 441

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 212 LLSRILVSS-TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           L+  ++        D ILDPF G GT+    +K      GIE+  
Sbjct: 64  LVRFLIEQLKVTQNDFILDPFSGRGTTIIECQKKGIKSQGIEINP 108



 Score = 36.5 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG 55
           +N L         F   + II G+S   L++   +SVD +   PPY  + + 
Sbjct: 240 RNDLQFISKTELNFSQLNSIILGDSTYNLQEEVHRSVDFVITSPPYPNRYSY 291


>gi|147920406|ref|YP_685819.1| putative RNA methyltransferase [uncultured methanogenic archaeon
           RC-I]
 gi|110621215|emb|CAJ36493.1| putative RNA methyltransferase [uncultured methanogenic archaeon
           RC-I]
          Length = 350

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
            + +   + R R ++ + L    K     + +L+S  +P DI LDPF GSGT   +A++ 
Sbjct: 167 HVKLTPATFRYRGQEKQFLSAALKASVAHAMVLISMPRPDDIFLDPFCGSGT--ILAERA 224

Query: 245 RRSF---IGIEMKQDYIDIATKRI 265
                  IG ++  + ++IA + +
Sbjct: 225 SCEAKAIIGSDISPERLEIARQNL 248


>gi|315230046|ref|YP_004070482.1| tRNA-(G10-N2) methyltransferase, tRNA-(G10-N2) dimethyltransferase
           [Thermococcus barophilus MP]
 gi|315183074|gb|ADT83259.1| tRNA-(G10-N2) methyltransferase, tRNA-(G10-N2) dimethyltransferase
           [Thermococcus barophilus MP]
          Length = 333

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 8/114 (7%)

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           +I+                +    +             +  ER  +K      P  KP A
Sbjct: 114 IIYRQGFRVNLSNPNTLVRVYCGKKLWVGIRVRFFKAKTFDERKADKR-----PFYKPIA 168

Query: 212 LLSRI---LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           L  RI   +V+  +    ILDPF G+G     A  +     G+++++D ++ A 
Sbjct: 169 LPPRIARAMVNLARAKMEILDPFMGTGGILIEAGLMGLKVYGVDLRRDMVEGAR 222


>gi|170724872|ref|YP_001758898.1| ribosomal protein L11 methyltransferase [Shewanella woodyi ATCC
           51908]
 gi|226710114|sp|B1KQE8|PRMA_SHEWM RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|169810219|gb|ACA84803.1| ribosomal protein L11 methyltransferase [Shewanella woodyi ATCC
           51908]
          Length = 293

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 53/171 (30%), Gaps = 12/171 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  +K         S   IP       + +     G   HPT    AL    
Sbjct: 95  WEREWMDNFHPIKFGERLWICPSWREIPDPEAVNIILDPGLAFGTGTHPTT---ALCLEW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S       ++D   GSG     A KL      GI++    ID +    A+ +  G  +
Sbjct: 152 LDSLNFDNKEVIDFGCGSGILAVAALKLGATKVTGIDIDYQAIDASK---ANAERNGVED 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGT 326
              L     +P      ++   ++     L      I+  V   G L    
Sbjct: 209 QLTLYLPEDQPENLKADILVANIL--AGPLRELAPLIAEKVKPGGQLALSG 257


>gi|77165661|ref|YP_344186.1| adenine-specific DNA methylase [Nitrosococcus oceani ATCC 19707]
 gi|76883975|gb|ABA58656.1| Adenine-specific DNA methylase containing a Zn-ribbon-like protein
           [Nitrosococcus oceani ATCC 19707]
          Length = 747

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 38/124 (30%), Gaps = 27/124 (21%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY--NLQL----------------------NGQLY 58
           I   ++ +V  KL   S+D +F DPPY  N+Q                            
Sbjct: 458 IHCADATTV--KLAPNSLDAVFTDPPYFGNVQYGELMDFCYVWLRRLVGNEAEGFWRPST 515

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
           R D  L   VT SW     F    A     +    +   P    +     +  F +G  +
Sbjct: 516 RTDGELTGNVTRSW-GLPRFTEGLARVYRHMAEALQPGAPLAFTYHHNKLNAYFAVGVAI 574

Query: 119 QNLN 122
            +  
Sbjct: 575 LDAG 578



 Score = 39.2 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 21/50 (42%)

Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           ++  PG  + DPF G GT    A ++     G ++      I  + I  +
Sbjct: 64  ANNFPGRQVADPFMGGGTPLIEANRIGCDVTGFDINPMAAWIVREEIEHL 113


>gi|254434202|ref|ZP_05047710.1| hypothetical protein NOC27_1133 [Nitrosococcus oceani AFC27]
 gi|207090535|gb|EDZ67806.1| hypothetical protein NOC27_1133 [Nitrosococcus oceani AFC27]
          Length = 736

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 38/124 (30%), Gaps = 27/124 (21%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY--NLQL----------------------NGQLY 58
           I   ++ +V  KL   S+D +F DPPY  N+Q                            
Sbjct: 447 IHCADATTV--KLAPNSLDAVFTDPPYFGNVQYGELMDFCYVWLRRLVGNEAEGFWRPST 504

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
           R D  L   VT SW     F    A     +    +   P    +     +  F +G  +
Sbjct: 505 RTDGELTGNVTRSW-GLPRFTEGLARVYRHMAEALQPGAPLAFTYHHNKLNAYFAVGVAI 563

Query: 119 QNLN 122
            +  
Sbjct: 564 LDAG 567



 Score = 38.8 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 21/50 (42%)

Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           ++  PG  + DPF G GT    A ++     G ++      I  + I  +
Sbjct: 53  ANNFPGRQVADPFMGGGTPLIEANRIGCDVTGFDINPMAAWIVREEIEHL 102


>gi|288932858|ref|YP_003436918.1| RNA methylase [Ferroglobus placidus DSM 10642]
 gi|288895106|gb|ADC66643.1| putative RNA methylase [Ferroglobus placidus DSM 10642]
          Length = 325

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 6/73 (8%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK----PGDIILDPFFGSGTSGA 239
           WLI + +  + L  +   K  P  +P A++ R   S          ++LDP  G+GT   
Sbjct: 138 WLIHVTNTKQFLERRPDLK--PFFRPGAVVPRFARSLVNITGVENGVVLDPMCGTGTMII 195

Query: 240 VAKKLRRSFIGIE 252
            A  +   FIG+E
Sbjct: 196 EAGLMNLDFIGVE 208


>gi|257467012|ref|ZP_05631323.1| ribosomal protein L11 methyltransferase [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 309

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 59/132 (44%), Gaps = 10/132 (7%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYI 258
           G   HPT    +L   ++    + G+ +LD   GSG    VA+KL   F+ G+++ +  +
Sbjct: 151 GTGSHPTT---SLCVDLMEEGIQEGETVLDVGTGSGILMIVAEKLGAGFVCGVDIDELAV 207

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL--LVERGLIQPGQILTNAQGNISATV 316
           ++A + +  +  +   +  VL G   E ++      +V   ++    +L     +IS+ V
Sbjct: 208 EVANENLE-LNKVSKEKYKVLHGNLIE-KIEKQSYDVVVANIL--ADVLLLLLKDISSVV 263

Query: 317 CADGTLISGTEL 328
              G +I    +
Sbjct: 264 KTGGKIIFSGII 275


>gi|195153190|ref|XP_002017512.1| GL21481 [Drosophila persimilis]
 gi|194112569|gb|EDW34612.1| GL21481 [Drosophila persimilis]
          Length = 277

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 9/83 (10%)

Query: 191 GSERLRNKDGEKLHPT-----QKPEALLSRILVSSTKPGD----IILDPFFGSGTSGAVA 241
             E   N++  K + T     +    +  R L     P D    +ILD   GSG SG+V 
Sbjct: 10  PPEIFYNENEAKKYSTNTRIIEIQVEMAERALELLAFPDDDESRLILDIGCGSGLSGSVL 69

Query: 242 KKLRRSFIGIEMKQDYIDIATKR 264
           +     +IGI++ +  +DIA +R
Sbjct: 70  EDSDHMWIGIDISKSMLDIAVER 92


>gi|10798462|emb|CAC12782.1| DNA methyltransferase C2 [Bacillus firmus]
          Length = 504

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 1/66 (1%)

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT-KRIASVQPLGNIELTVL 279
                 ++DPF GSGT+         + IG+++    + IA  K+IA   P   I     
Sbjct: 119 VNENSNVIDPFSGSGTTLLECSLQNINAIGLDINPLAVFIANAKQIAISNPAEKIAEVGN 178

Query: 280 TGKRTE 285
              R  
Sbjct: 179 KIIRDF 184


>gi|258514191|ref|YP_003190413.1| hypothetical protein Dtox_0894 [Desulfotomaculum acetoxidans DSM
           771]
 gi|257777896|gb|ACV61790.1| hypothetical protein Dtox_0894 [Desulfotomaculum acetoxidans DSM
           771]
          Length = 445

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 26/54 (48%)

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +L P+  PE +   +  + T    ++LDPF G GT+    K  + +  G E+  
Sbjct: 41  RLTPSYGPELVEIMLAETETCDKHVVLDPFAGGGTTLIQCKLNQIAAYGFEINP 94


>gi|331006291|ref|ZP_08329608.1| Ribosomal protein L11 methyltransferase [gamma proteobacterium
           IMCC1989]
 gi|330419912|gb|EGG94261.1| Ribosomal protein L11 methyltransferase [gamma proteobacterium
           IMCC1989]
          Length = 327

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 7/114 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  NY  ++ A+      S    P       L +     G   HPT     L  + 
Sbjct: 123 WEREWMQNYHPIQCADNLWICPSWIAPPAPEAINILLDPGLAFGTGTHPTTF---LCLQW 179

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQ 269
           L   T     ++D   GSG  G  A  L  +   GI++    +      +   Q
Sbjct: 180 LAKQTLDDQHVIDFGCGSGILGVAALLLGAKQATGIDIDPQALLATQDNLQRNQ 233


>gi|332521886|ref|ZP_08398334.1| DNA methylase N-4/N-6 domain protein [Lacinutrix algicola 5H-3-7-4]
 gi|332042488|gb|EGI78691.1| DNA methylase N-4/N-6 domain protein [Lacinutrix algicola 5H-3-7-4]
          Length = 415

 Score = 44.6 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 5/87 (5%)

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG--DIIL 228
           +K          +W        E   +      +P      +  +++      G  + IL
Sbjct: 1   MKIKEYKRTYTDEWDFRTSDTKEYTHSYH---TYPAMMIPQIARKLIQDYKPKGKLENIL 57

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           DP+ GSGT+   AK    + IG ++  
Sbjct: 58  DPYMGSGTTLVEAKIQGINAIGTDLNP 84



 Score = 40.0 bits (92), Expect = 0.68,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 4/51 (7%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           +   S+DL+   PPY        Y           + W KF + +  D   
Sbjct: 239 IKEGSIDLVVTSPPYGDSKTTVAYGQ----FSRWANEWFKFENAKKIDNLL 285


>gi|312136740|ref|YP_004004077.1| RNA methylase [Methanothermus fervidus DSM 2088]
 gi|311224459|gb|ADP77315.1| putative RNA methylase [Methanothermus fervidus DSM 2088]
          Length = 343

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 5/86 (5%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEAL---LSRILVSS--TKPGDIILDPFFGSGTSGAV 240
           I I   +++  N       P   P +L   ++R +V+    K G+ ILDPF G+G     
Sbjct: 145 IRIGKINKKHFNIAKPHKRPFFHPSSLDPKIARCMVNLARVKKGEKILDPFCGAGGVLIE 204

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIA 266
           A  +    IG ++ +  +  A + + 
Sbjct: 205 AGMIGIKVIGCDIDKKMVKGAIENLK 230



 Score = 39.6 bits (91), Expect = 0.87,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           K+ + ++  +  KL  + VD I  DPPY +  + +         + +  + D    
Sbjct: 238 KVFQEDARKI--KLK-EKVDAIVTDPPYGISTSTKGEELSKLYYEFLLSAKDNLKD 290


>gi|303243742|ref|ZP_07330083.1| ribosomal L11 methyltransferase [Methanothermococcus okinawensis
           IH1]
 gi|302485984|gb|EFL48907.1| ribosomal L11 methyltransferase [Methanothermococcus okinawensis
           IH1]
          Length = 270

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 58/143 (40%), Gaps = 22/143 (15%)

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK--RIAS 267
            A+    +  + KP D++ D   GSG    +A ++ ++   +E+       A +  +I  
Sbjct: 21  VAIFKEAIKKTVKPNDVVYDLGTGSGILAMIASQITKNVYAVELDPITYAYAKENIKINK 80

Query: 268 VQPLGNIE-----------------LTVLTGKRTEPRVA-FNLLVERGLIQPGQILTNAQ 309
            + +  IE                   + T   TEP+V   N ++++GL++ G  L   +
Sbjct: 81  CENINLIEADASEYNFKEPADVIIAEMLDTALITEPQVPVLNAIIKKGLLKEGGKLIPER 140

Query: 310 GNISATV--CADGTLISGTELGS 330
            + +A V     G +    E+ S
Sbjct: 141 AHNTAQVVIAKMGHIYYDEEVIS 163


>gi|320156383|ref|YP_004188762.1| 23S rRNA (guanine-N-2-) -methyltransferase rlmL [Vibrio vulnificus
           MO6-24/O]
 gi|319931695|gb|ADV86559.1| 23S rRNA (guanine-N-2-) -methyltransferase rlmL [Vibrio vulnificus
           MO6-24/O]
          Length = 707

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 22/130 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + K  + + +  LEK   +  DLIF DPP         +     + D+     D      
Sbjct: 594 QHKFEQADCLQWLEKAQGQY-DLIFIDPP--------TFSNSKRMEDSFDVQRDHIK--- 641

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                    +   +R+L+ NGT+    +  +       ++ L     N  +  ++ P+  
Sbjct: 642 --------LMKNLKRLLRENGTIVFSNNKRHFKMDMEAMEELGLDAKN--ISSQTLPLDF 691

Query: 140 FRGRRFQNAH 149
            R +   N  
Sbjct: 692 SRNKHIHNCW 701


>gi|257451704|ref|ZP_05617003.1| ribosomal protein L11 methyltransferase [Fusobacterium sp. 3_1_5R]
          Length = 309

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 59/132 (44%), Gaps = 10/132 (7%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYI 258
           G   HPT    +L   ++    + G+ +LD   GSG    VA+KL   F+ G+++ +  +
Sbjct: 151 GTGSHPTT---SLCVDLMEEGIQEGETVLDVGTGSGILMIVAEKLGAGFVCGVDIDELAV 207

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL--LVERGLIQPGQILTNAQGNISATV 316
           ++A + +  +  +   +  VL G   E ++      +V   ++    +L     +IS+ V
Sbjct: 208 EVANENLE-LNKVSKEKYKVLHGNLIE-KIEKQSYDVVVANIL--ADVLLLLLKDISSVV 263

Query: 317 CADGTLISGTEL 328
              G +I    +
Sbjct: 264 KTGGKIIFSGII 275


>gi|52424802|ref|YP_087939.1| 23S rRNA m(2)G2445 methyltransferase [Mannheimia succiniciproducens
           MBEL55E]
 gi|81825561|sp|Q65UK6|RLML_MANSM RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|52306854|gb|AAU37354.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 715

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 20/92 (21%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + K+I+ + +  L    A+  DLIF DPP              S    + DSWD      
Sbjct: 603 QHKLIQADCLQWLANC-AQQFDLIFVDPP------------TFSNSKRMEDSWDVQRDHI 649

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
                    +   +R+L+PNGT+    +    
Sbjct: 650 -------KLMGNLKRILRPNGTIVFSNNKRGF 674


>gi|315918150|ref|ZP_07914390.1| ribosomal protein L11 methyltransferase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313692025|gb|EFS28860.1| ribosomal protein L11 methyltransferase [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 313

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 59/132 (44%), Gaps = 10/132 (7%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYI 258
           G   HPT    +L   ++    + G+ +LD   GSG    VA+KL   F+ G+++ +  +
Sbjct: 155 GTGSHPTT---SLCVDLMEEGIQEGETVLDVGTGSGILMIVAEKLGAGFVCGVDIDELAV 211

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL--LVERGLIQPGQILTNAQGNISATV 316
           ++A + +  +  +   +  VL G   E ++      +V   ++    +L     +IS+ V
Sbjct: 212 EVANENLE-LNKVSKEKYKVLHGNLIE-KIEKQSYDVVVANIL--ADVLLLLLKDISSVV 267

Query: 317 CADGTLISGTEL 328
              G +I    +
Sbjct: 268 KTGGKIIFSGII 279


>gi|157377249|ref|YP_001475849.1| ribosomal protein L11 methyltransferase [Shewanella sediminis
           HAW-EB3]
 gi|189037705|sp|A8G0U8|PRMA_SHESH RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|157319623|gb|ABV38721.1| ribosomal protein L11 methyltransferase [Shewanella sediminis
           HAW-EB3]
          Length = 293

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 44/132 (33%), Gaps = 10/132 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  +K         S   IP       + +     G   HPT    AL    
Sbjct: 95  WEREWMDNFHPIKFGERLWICPSWREIPDPDAVNIILDPGLAFGTGTHPTT---ALCLEW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S       ++D   GSG     A KL      GI++    ID +    A+ +  G  +
Sbjct: 152 LDSLDFADKEVIDFGCGSGILAVAALKLGATKVTGIDIDYQAIDASK---ANAERNGVED 208

Query: 276 LTVLTGKRTEPR 287
              L     +P+
Sbjct: 209 QLALFLPEDQPK 220


>gi|37679840|ref|NP_934449.1| 23S rRNA m(2)G2445 methyltransferase [Vibrio vulnificus YJ016]
 gi|81859891|sp|Q7MKX1|RLML_VIBVY RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|37198585|dbj|BAC94420.1| predicted N6-adenine-specific DNA methylase [Vibrio vulnificus
           YJ016]
          Length = 707

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 22/130 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + K  + + +  LEK   +  DLIF DPP         +     + D+     D      
Sbjct: 594 QHKFEQADCLQWLEKAQGQY-DLIFIDPP--------TFSNSKRMEDSFDVQRDHIK--- 641

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                    +   +R+L+ NGT+    +  +       ++ L     N  +  ++ P+  
Sbjct: 642 --------LMKNLKRLLRENGTIVFSNNKRHFKMDMEAMEELGLDAKN--ISSQTLPLDF 691

Query: 140 FRGRRFQNAH 149
            R +   N  
Sbjct: 692 SRNKHIHNCW 701


>gi|330834308|ref|YP_004409036.1| putative RNA methylase [Metallosphaera cuprina Ar-4]
 gi|329566447|gb|AEB94552.1| putative RNA methylase [Metallosphaera cuprina Ar-4]
          Length = 305

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 27/49 (55%)

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           SR++V+ ++P   +LDPF G G+    A+ L    +G++     I+ A 
Sbjct: 151 SRLMVNLSRPKGKVLDPFLGLGSILIEARWLGNQCVGLDADVKMINKAK 199


>gi|115372059|ref|ZP_01459371.1| methlytransferase, UbiE/COQ5 family [Stigmatella aurantiaca
           DW4/3-1]
 gi|310824652|ref|YP_003957010.1| hypothetical protein STAUR_7427 [Stigmatella aurantiaca DW4/3-1]
 gi|115371024|gb|EAU69947.1| methlytransferase, UbiE/COQ5 family [Stigmatella aurantiaca
           DW4/3-1]
 gi|309397724|gb|ADO75183.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 283

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 7/107 (6%)

Query: 194 RLRNKDGEKLHPTQKP-EALLSRILVSSTKPGDIILDPFFGSGTSGAV-AKKLR--RSFI 249
           R   +  + L P  KP E LL   + + ++    +LD   G+G++    A++L      I
Sbjct: 21  RAWVETQDLLDPMFKPLEDLLVEAVFAGSESQ--VLDVGCGTGSTALAVARRLGAKGRCI 78

Query: 250 GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
           GI++ +  I  A  R A  +      +            +F++++ R
Sbjct: 79  GIDISEPMITAARAR-AERENTPASFIRANAQNHAFEPASFDMILSR 124


>gi|33151297|ref|NP_872650.1| ribosomal protein L11 methyltransferase [Haemophilus ducreyi
           35000HP]
 gi|38605187|sp|Q7VPN5|PRMA_HAEDU RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|33147517|gb|AAP95039.1| ribosomal protein L11 methyltransferase [Haemophilus ducreyi
           35000HP]
          Length = 293

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 55/167 (32%), Gaps = 12/167 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P       + +     G   HPT    AL  + 
Sbjct: 95  WEREWMDNFHPMQFGQRLWICPSWREVPDEKAVNIMLDPGLAFGTGTHPTT---ALCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG     A KL  +  IGI++    I  +     +    G  +
Sbjct: 152 LDGLDLTGKTVIDFGCGSGILAISALKLGAKQAIGIDIDPQAILASQN---NAAANGVAD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
              L   + +P+     +V   ++     L     NI   V   G L
Sbjct: 209 RLQLFLAKDQPQALQADVVVANIL--AGPLKELAPNIMTLVKPQGYL 253


>gi|148978841|ref|ZP_01815194.1| predicted methyltransferase [Vibrionales bacterium SWAT-3]
 gi|145962152|gb|EDK27437.1| predicted methyltransferase [Vibrionales bacterium SWAT-3]
          Length = 706

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 42/130 (32%), Gaps = 22/130 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + + ++ + +  L K    S DLIF DPP         +     +  +     D     E
Sbjct: 594 QHQFVQADCLQWLVK-EQGSYDLIFIDPP--------TFSNSKRMDQSFDVQRDHIQLME 644

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                        +R+L+  GT+    +  +       L  L     N  +  K+ P+  
Sbjct: 645 -----------NLKRLLRDEGTIVFSNNKRHFKMDLEALDELGLKAQN--ISAKTLPLDF 691

Query: 140 FRGRRFQNAH 149
            R +   N  
Sbjct: 692 SRNKHIHNCW 701


>gi|320546974|ref|ZP_08041275.1| hypothetical protein HMPREF0819_0681 [Streptococcus equinus ATCC
           9812]
 gi|320448376|gb|EFW89118.1| hypothetical protein HMPREF0819_0681 [Streptococcus equinus ATCC
           9812]
          Length = 249

 Score = 44.2 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 18/100 (18%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
           Q NS ++N+   SI     K I   S++ L+KLP  S D+++ DP ++ ++         
Sbjct: 137 QSNSESLNQAMRSI-----KTICAESLAYLKKLPNDSFDIVYCDPMFSERIE-------- 183

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL 102
                 + + D    +    AF+   L   +RV +    +
Sbjct: 184 -----ESKNLDGLRQYANVTAFSEELLQETKRVARKKIII 218


>gi|228964261|ref|ZP_04125380.1| O-antigen biosynthesis protein [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228795358|gb|EEM42846.1| O-antigen biosynthesis protein [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 229

 Score = 44.2 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 58/160 (36%), Gaps = 24/160 (15%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L  +  E  +    P  LL  I     +    +LD    SGT GA  K+      GIE  
Sbjct: 8   LYEEKSEHYYNAANP-NLLKHIKKEWKE----VLDIGCSSGTLGAAIKENGTRVSGIEAF 62

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNA---QG 310
            +  + A +R+  V  LG+IE   L  +  +   + F  ++E         L +      
Sbjct: 63  PEAAEKAKERLDHVI-LGDIEKIDLPYEEEQFDCILFGDVLEH--------LFDPWAVIE 113

Query: 311 NISATVCADGTLISGTELGSIHRVGAKVSGSETCNG-WNF 349
            +   +  +G +++     SI  V      +    G W +
Sbjct: 114 KVKPYIKQNGVILA-----SIPNVAHISVLAPLLAGNWTY 148


>gi|146283595|ref|YP_001173748.1| ribosomal protein L11 methyltransferase [Pseudomonas stutzeri
           A1501]
 gi|145571800|gb|ABP80906.1| ribosomal protein L11 methyltransferase [Pseudomonas stutzeri
           A1501]
          Length = 320

 Score = 44.2 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 62/193 (32%), Gaps = 15/193 (7%)

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
             G   ++  E +         + +  N+  ++  +    + S    P       L +  
Sbjct: 104 RGGDLPEHQTEVI---EDQDWERSWMDNFQPMRFGHRLWIVPSWHAAPEPDAVNLLLDPG 160

Query: 200 ---GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQ 255
              G   HPT    AL    L + T     +LD   GSG        L  R  +G ++  
Sbjct: 161 LAFGTGTHPTT---ALCLEWLDAQTLDDRSLLDFGCGSGILAIAGLLLGARQAVGTDIDP 217

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
             ++ +     + +     E   L      P+   +++V    I  G  L +    I+A 
Sbjct: 218 QALEASRD--NAERNGIAPERFTLYLPEQLPQEPADVVVAN--ILAGP-LVSLAPQITAL 272

Query: 316 VCADGTLISGTEL 328
           V   G L     L
Sbjct: 273 VKPGGRLALSGIL 285


>gi|312377087|gb|EFR24004.1| hypothetical protein AND_11734 [Anopheles darlingi]
          Length = 1490

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 218  VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
             +  + GD++LDPF G+G+    A K     IG ++ 
Sbjct: 1390 QALVRKGDLVLDPFAGTGSLLVAAAKFGAYVIGADID 1426


>gi|45359164|ref|NP_988721.1| putative RNA methylase [Methanococcus maripaludis S2]
 gi|45048039|emb|CAF31157.1| Putative RNA methylase [Methanococcus maripaludis S2]
          Length = 260

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 57/146 (39%), Gaps = 28/146 (19%)

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            ++    + +S KPGDI+ D   GSG    +A K  +    +E+     +   + I    
Sbjct: 21  VSVFKEAVETSVKPGDIVFDLGTGSGILAMIAAKNAKHVYAVELDPITTEYTRENIKENN 80

Query: 270 --------------PLGNIELTVL-----TGKRTEPRVA-FNLLVERGLIQPG-----QI 304
                         P       V+     TG  TEP+V   N ++E+GL++ G     + 
Sbjct: 81  YDNITVIEDDAAYYPFSEKADVVIAELLDTGLITEPQVPVLNSIIEKGLLKEGGLIIPEE 140

Query: 305 LTNAQGNISATVCADGTLISGTELGS 330
           + N+   + + +   G +    E+ S
Sbjct: 141 VYNSAQLVKSKM---GHIYYDEEVTS 163


>gi|326778430|ref|ZP_08237695.1| adenine-specific DNA modification methyltransferase [Streptomyces
           cf. griseus XylebKG-1]
 gi|326658763|gb|EGE43609.1| adenine-specific DNA modification methyltransferase [Streptomyces
           cf. griseus XylebKG-1]
          Length = 375

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 11/105 (10%)

Query: 200 GEKLHPT-----QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           G KLH       +   A+   ++ S +  G  +LDP  G GT    A  L R  I  +  
Sbjct: 30  GHKLHSLCSYQGKFKPAMAHWLVKSFSPEGGRVLDPLGGVGTVPFEAALLGRRAITNDKS 89

Query: 255 QDYIDIATKRI------ASVQPLGNIELTVLTGKRTEPRVAFNLL 293
                +   ++       +++ +  +E  +LT   +   +A    
Sbjct: 90  PLAATVGAAKMTPPTIDRALEQISRLEKQMLTVDLSAEEIAEAEF 134


>gi|256846784|ref|ZP_05552239.1| type III restriction-modification system methylation subunit
           [Fusobacterium sp. 3_1_36A2]
 gi|256717750|gb|EEU31308.1| type III restriction-modification system methylation subunit
           [Fusobacterium sp. 3_1_36A2]
          Length = 379

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 7/60 (11%)

Query: 198 KDGEKLHP-TQKPEALLSRILVS--STKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEM 253
           K+G+  +P  +KP  L++RI+ +    +  DI++D F GS T+   A+    R +I +++
Sbjct: 119 KEGDVSYPNAKKPLKLMNRIIKAVLFLEKDDIVMDFFSGSATT---AEDGGIRKYIMVQL 175


>gi|76812155|ref|YP_334873.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           1710b]
 gi|126439278|ref|YP_001060478.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           668]
 gi|254258318|ref|ZP_04949372.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           1710a]
 gi|254299321|ref|ZP_04966771.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           406e]
 gi|123597942|sp|Q3JNI0|PRMA_BURP1 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|166223401|sp|A3NDQ7|PRMA_BURP6 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|76581608|gb|ABA51083.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           1710b]
 gi|126218771|gb|ABN82277.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           668]
 gi|157809259|gb|EDO86429.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           406e]
 gi|254217007|gb|EET06391.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           1710a]
          Length = 300

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 12/130 (9%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L    L  + +PG  +LD   GSG    +AKK       GI++    +
Sbjct: 145 GTGSHPTTR---LCMEWLEQTVQPGQTVLDYGCGSGILAILAKKCGAGRVTGIDIDPQAV 201

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + A  R  S +   ++   +       P   F+++V   L  P +++ +    +++ V  
Sbjct: 202 EAA--RHNSERNRADVTYGLPDD---CPDGEFDIVVANILSNPLKLMASM---LASKVKP 253

Query: 319 DGTLISGTEL 328
            G +     L
Sbjct: 254 GGRIALSGVL 263


>gi|53726117|ref|YP_104049.1| ribosomal protein L11 methyltransferase [Burkholderia mallei ATCC
           23344]
 gi|121601286|ref|YP_991774.1| ribosomal protein L11 methyltransferase [Burkholderia mallei SAVP1]
 gi|124385858|ref|YP_001027267.1| ribosomal protein L11 methyltransferase [Burkholderia mallei NCTC
           10229]
 gi|126450877|ref|YP_001082797.1| ribosomal protein L11 methyltransferase [Burkholderia mallei NCTC
           10247]
 gi|166998585|ref|ZP_02264443.1| ribosomal protein L11 methyltransferase [Burkholderia mallei
           PRL-20]
 gi|238561259|ref|ZP_00442332.2| ribosomal protein L11 methyltransferase [Burkholderia mallei GB8
           horse 4]
 gi|254178904|ref|ZP_04885558.1| ribosomal protein L11 methyltransferase [Burkholderia mallei ATCC
           10399]
 gi|254202768|ref|ZP_04909131.1| ribosomal protein L11 methyltransferase [Burkholderia mallei FMH]
 gi|254208110|ref|ZP_04914460.1| ribosomal protein L11 methyltransferase [Burkholderia mallei JHU]
 gi|60390319|sp|Q62GX2|PRMA_BURMA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|166223398|sp|A3MRB1|PRMA_BURM7 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|166223399|sp|A2S5P8|PRMA_BURM9 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|166223400|sp|A1V0M1|PRMA_BURMS RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|52429540|gb|AAU50133.1| ribosomal protein L11 methyltransferase [Burkholderia mallei ATCC
           23344]
 gi|121230096|gb|ABM52614.1| ribosomal protein L11 methyltransferase [Burkholderia mallei SAVP1]
 gi|124293878|gb|ABN03147.1| ribosomal protein L11 methyltransferase [Burkholderia mallei NCTC
           10229]
 gi|126243747|gb|ABO06840.1| ribosomal protein L11 methyltransferase [Burkholderia mallei NCTC
           10247]
 gi|147747015|gb|EDK54092.1| ribosomal protein L11 methyltransferase [Burkholderia mallei FMH]
 gi|147752004|gb|EDK59071.1| ribosomal protein L11 methyltransferase [Burkholderia mallei JHU]
 gi|160694818|gb|EDP84826.1| ribosomal protein L11 methyltransferase [Burkholderia mallei ATCC
           10399]
 gi|238524959|gb|EEP88389.1| ribosomal protein L11 methyltransferase [Burkholderia mallei GB8
           horse 4]
 gi|243065269|gb|EES47455.1| ribosomal protein L11 methyltransferase [Burkholderia mallei
           PRL-20]
          Length = 300

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 12/130 (9%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L    L  + +PG  +LD   GSG    +AKK       GI++    +
Sbjct: 145 GTGSHPTTR---LCMEWLEQTVQPGQTVLDYGCGSGILAILAKKCGAGRVTGIDIDPQAV 201

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + A  R  S +   ++   +       P   F+++V   L  P +++ +    +++ V  
Sbjct: 202 EAA--RHNSERNRADVTYGLPDD---CPDGEFDIVVANILSNPLKLMASM---LASKVKP 253

Query: 319 DGTLISGTEL 328
            G +     L
Sbjct: 254 GGRIALSGVL 263


>gi|53720593|ref|YP_109579.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           K96243]
 gi|167740256|ref|ZP_02413030.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           14]
 gi|167817474|ref|ZP_02449154.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           91]
 gi|167847363|ref|ZP_02472871.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           B7210]
 gi|60390329|sp|Q63QN9|PRMA_BURPS RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|52211007|emb|CAH36995.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           K96243]
          Length = 300

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 12/130 (9%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L    L  + +PG  +LD   GSG    +AKK       GI++    +
Sbjct: 145 GTGSHPTTR---LCMEWLEQTVQPGQTVLDYGCGSGILAILAKKCGAGRVTGIDIDPQAV 201

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + A  R  S +   ++   +       P   F+++V   L  P +++ +    +++ V  
Sbjct: 202 EAA--RHNSERNRADVTYGLPDD---CPDGEFDIVVANILSNPLKLMASM---LASKVKP 253

Query: 319 DGTLISGTEL 328
            G +     L
Sbjct: 254 GGRIALSGVL 263


>gi|134280036|ref|ZP_01766747.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           305]
 gi|134248043|gb|EBA48126.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           305]
          Length = 302

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 12/130 (9%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L    L  + +PG  +LD   GSG    +AKK       GI++    +
Sbjct: 147 GTGSHPTTR---LCMEWLEQTVQPGQTVLDYGCGSGILAILAKKCGAGRVTGIDIDPQAV 203

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + A  R  S +   ++   +       P   F+++V   L  P +++ +    +++ V  
Sbjct: 204 EAA--RHNSERNRADVTYGLPDD---CPDGEFDIVVANILSNPLKLMASM---LASKVKP 255

Query: 319 DGTLISGTEL 328
            G +     L
Sbjct: 256 GGRIALSGVL 265


>gi|296108940|ref|YP_003615889.1| ribosomal L11 methyltransferase [Methanocaldococcus infernus ME]
 gi|295433754|gb|ADG12925.1| ribosomal L11 methyltransferase [Methanocaldococcus infernus ME]
          Length = 201

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 58/145 (40%), Gaps = 18/145 (12%)

Query: 199 DGEKLHPTQKPE--------ALLSRILVSSTKP--GDIILDPFFGSGTSGAVAKKLR-RS 247
           D  K HP  K E        +L S +L  + K   G  +LD   G+G     AK L  + 
Sbjct: 11  DSLKPHPNPKVELEQYTISGSLASELLFLAQKDFIGKTVLDLGCGTGRLAIGAKLLGAKR 70

Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTN 307
            +GI++ ++ I++A +   + + LG     +    R   R  F+  V      P      
Sbjct: 71  AVGIDIDRESIEVAKE---NAKALGVDVEFICNDVRNIKREMFDEEVVVIQNPP----FG 123

Query: 308 AQGNISATVCADGTLISGTELGSIH 332
           AQ   S  +  +  L  G  + SIH
Sbjct: 124 AQKKGSDRIFLEKALELGDVIYSIH 148


>gi|317058263|ref|ZP_07922748.1| ribosomal protein L11 methyltransferase [Fusobacterium sp. 3_1_5R]
 gi|313683939|gb|EFS20774.1| ribosomal protein L11 methyltransferase [Fusobacterium sp. 3_1_5R]
          Length = 313

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 59/132 (44%), Gaps = 10/132 (7%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYI 258
           G   HPT    +L   ++    + G+ +LD   GSG    VA+KL   F+ G+++ +  +
Sbjct: 155 GTGSHPTT---SLCVDLMEEGIQEGETVLDVGTGSGILMIVAEKLGAGFVCGVDIDELAV 211

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL--LVERGLIQPGQILTNAQGNISATV 316
           ++A + +  +  +   +  VL G   E ++      +V   ++    +L     +IS+ V
Sbjct: 212 EVANENLE-LNKVSKEKYKVLHGNLIE-KIEKQSYDVVVANIL--ADVLLLLLKDISSVV 267

Query: 317 CADGTLISGTEL 328
              G +I    +
Sbjct: 268 KTGGKIIFSGII 279


>gi|227827457|ref|YP_002829236.1| RNA methylase [Sulfolobus islandicus M.14.25]
 gi|229584672|ref|YP_002843173.1| RNA methylase [Sulfolobus islandicus M.16.27]
 gi|238619613|ref|YP_002914438.1| putative RNA methylase [Sulfolobus islandicus M.16.4]
 gi|227459252|gb|ACP37938.1| putative RNA methylase [Sulfolobus islandicus M.14.25]
 gi|228019721|gb|ACP55128.1| putative RNA methylase [Sulfolobus islandicus M.16.27]
 gi|238380682|gb|ACR41770.1| putative RNA methylase [Sulfolobus islandicus M.16.4]
          Length = 312

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           T  PE   SR+LV+ ++P   +LDPF G+G+    A+ L+   IG ++ +  +    
Sbjct: 149 TMSPE--TSRLLVNLSRPKKEVLDPFVGTGSILIEARWLKYDCIGSDLDKTMLQKTK 203


>gi|332974612|gb|EGK11530.1| modification methylase BsoBI (N(4)) [Psychrobacter sp. 1501(2011)]
          Length = 430

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +        ++ +L  +      ILDP+ G+G +  VAK L    +G+++      IA  
Sbjct: 22  YYAGYSHEFVNEVLQRAKNQDSFILDPWSGTGLTCTVAKTLGCKSLGVDINPVMTIIAKA 81


>gi|108757459|ref|YP_628440.1| hypothetical protein MXAN_0157 [Myxococcus xanthus DK 1622]
 gi|108461339|gb|ABF86524.1| hypothetical protein MXAN_0157 [Myxococcus xanthus DK 1622]
          Length = 266

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
            R ++  T+   ++ DPF G GT  AVA  L    +G+E+ +     A  
Sbjct: 190 CRFILEHTRTRTVV-DPFCGHGTVLAVANALGLDAVGVELSRKRARKARN 238


>gi|238919293|ref|YP_002932808.1| 23S rRNA m(2)G2445 methyltransferase [Edwardsiella ictaluri 93-146]
 gi|238868862|gb|ACR68573.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 705

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 42/140 (30%), Gaps = 22/140 (15%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++++ + ++ L     K  DLIF DPP          +      D   
Sbjct: 579 NLRLNGLTGRQHRLVQADCLNYLHHCEDK-FDLIFIDPP-----TFSNSKRMEGTFDVQR 632

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
           D  D                    R+L+P GT+    +          L      +    
Sbjct: 633 DHLDLMRDL--------------ARILRPGGTIMFSNNKRGFKMDLAGLAQRG--LQAQE 676

Query: 130 VWRKSNPMPNFRGRRFQNAH 149
           +  ++      R R+  N  
Sbjct: 677 ITDRTLSADFARNRQIHNCW 696


>gi|238026174|ref|YP_002910405.1| ribosomal protein L11 methyltransferase [Burkholderia glumae BGR1]
 gi|237875368|gb|ACR27701.1| Ribosomal protein L11 methyltransferase [Burkholderia glumae BGR1]
          Length = 300

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 12/130 (9%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L    L  + + G  +LD   GSG    +AKK      IGI++    +
Sbjct: 145 GTGSHPTTR---LCMEWLEQTVEAGQSVLDYGCGSGILAILAKKCGAGRVIGIDIDPQAV 201

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + A  R  S +    ++  +       P   F+++V   L  P +++ +    +++ V  
Sbjct: 202 ESA--RHNSERNRAEVDYGLPDD---CPPGEFDIVVANILSNPLKLMASM---LASKVRP 253

Query: 319 DGTLISGTEL 328
            G +     L
Sbjct: 254 GGRIALSGVL 263


>gi|117928022|ref|YP_872573.1| hypothetical protein Acel_0814 [Acidothermus cellulolyticus 11B]
 gi|117648485|gb|ABK52587.1| conserved hypothetical protein [Acidothermus cellulolyticus 11B]
          Length = 992

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 11/86 (12%)

Query: 35  LPAKSVDLIFADPPY---------NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           LP  S+D IF DPP+         N  +        ++  +A+ D   K      Y    
Sbjct: 546 LPDNSIDYIFTDPPFGENIYYADLNFLVESWHRVLTNATPEAIVDKAKK-KGLPEYQHLM 604

Query: 86  RAWLLACRRVLKPNGTL-WVIGSYHN 110
           R       RVLKP   +  V  +  N
Sbjct: 605 RQCFAEYCRVLKPGRWMTVVFHNSRN 630



 Score = 41.1 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 22/37 (59%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           T+ P   +   ++  T+PGD++LD F GSG +   A+
Sbjct: 175 TKVPHLAIVPSILHYTEPGDVVLDGFCGSGMTSVAAQ 211


>gi|296454091|ref|YP_003661234.1| hypothetical protein BLJ_0939 [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183522|gb|ADH00404.1| protein of unknown function DUF262 [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 825

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 17/99 (17%)

Query: 280 TGKRTEPRVAFNLLVERGLIQPGQILTNAQGNI--SATVCADGTLISGTELGSI------ 331
            G+R +  V F  L +RG++  G +L +    +  +ATV  D  +      G I      
Sbjct: 587 QGEREQNAVDFADLCKRGILTAGDMLESRYAGVTATATVTEDHRIRLSN--GEIFDSPSG 644

Query: 332 ----HRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRI 366
                R+       +  NGW  W       L   + LR 
Sbjct: 645 AFRRARMLETGENKQINNGWTVWKVADGRTL---DELRQ 680


>gi|311068696|ref|YP_003973619.1| putative methyltransferase [Bacillus atrophaeus 1942]
 gi|310869213|gb|ADP32688.1| putative methyltransferase [Bacillus atrophaeus 1942]
          Length = 257

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 25  KGNSISVLEKLPAKSVDLIFADP 47
             +    L++LP  SVD+I+ DP
Sbjct: 160 HADCFDYLKQLPDDSVDVIYFDP 182


>gi|288957690|ref|YP_003448031.1| hypothetical protein AZL_008490 [Azospirillum sp. B510]
 gi|288958869|ref|YP_003449210.1| hypothetical protein AZL_020280 [Azospirillum sp. B510]
 gi|288909998|dbj|BAI71487.1| hypothetical protein AZL_008490 [Azospirillum sp. B510]
 gi|288911177|dbj|BAI72666.1| hypothetical protein AZL_020280 [Azospirillum sp. B510]
          Length = 469

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 44/132 (33%), Gaps = 20/132 (15%)

Query: 24  IKGNSISVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I+G+S  +   LPA    DL+F  PPY    + ++Y        A       F S++ + 
Sbjct: 303 IEGDSAKIDSLLPAGRLYDLVFTSPPY---YDLEIYSKGEKDGSA-------FESYDRFI 352

Query: 83  AFTRAWLLACRRVLKPNG-TLWVIGS-------YHNIFRIGTM-LQNLNFWILNDIVWRK 133
           ++ R         LKPN   +  IG        Y N          +      N+ V   
Sbjct: 353 SWYRDIFRQACGRLKPNRFAVVKIGDVRDERGFYRNFLGDNIACFLDAGLGFYNEAVLAT 412

Query: 134 SNPMPNFRGRRF 145
                  R  R 
Sbjct: 413 PIGSLALRAGRQ 424


>gi|115638547|ref|XP_787412.2| PREDICTED: similar to DNA methyltransferase 3A [Strongylocentrotus
            purpuratus]
 gi|115931470|ref|XP_001187128.1| PREDICTED: similar to DNA methyltransferase 3A [Strongylocentrotus
            purpuratus]
          Length = 1447

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 75/191 (39%), Gaps = 22/191 (11%)

Query: 116  TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA--------SPSPKAKGYTFN 167
              L +   +  +  +  + N +     +   +++ T+               + + ++  
Sbjct: 1054 AYLYDCEGYQAHCCICAEGNQITLCDNQGCYHSYCTVCMDNLVGPQESKRVSEQEPWSCY 1113

Query: 168  YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
              +   ++  +  R DW   +     R +  D E       P  +   +L+S+ +P   +
Sbjct: 1114 LCSADCSHGYLTRRDDWQEQLVDFFNRDQVADFE-------PLRMYKPLLLSNRRPI-RV 1165

Query: 228  LDPFFGSGTSGAVAKKLRRS---FIGIEMKQDYIDIATKRIA-SVQPLGNIELTVLTGKR 283
            L  F G GT   V ++L      +   E+ ++ I +A  R+   +Q +G+++   +T K 
Sbjct: 1166 LSLFDGLGTGMLVLRELGFDVECYYASEVSEEAITVAAVRLKGQIQQIGDVQK--ITPKE 1223

Query: 284  TEPRVAFNLLV 294
             +    F++L+
Sbjct: 1224 LKSWGPFDILI 1234


>gi|121534803|ref|ZP_01666623.1| ribosomal protein L11 methyltransferase [Thermosinus
           carboxydivorans Nor1]
 gi|121306598|gb|EAX47520.1| ribosomal protein L11 methyltransferase [Thermosinus
           carboxydivorans Nor1]
          Length = 312

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 4/117 (3%)

Query: 151 TLIWASPSPKAKGYTF-NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
            + W     +    ++ NY       E + ++  W     +  E +   D      T   
Sbjct: 98  HIYWQEVQEEDWASSWKNYFHPVKVGEKIVIKPSWEEYNQAEGEIIVELDPGMAFGTGTH 157

Query: 210 E--ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF-IGIEMKQDYIDIATK 263
              A+  RIL    KPGD++ D   GSG    VA KL       +++    +++A +
Sbjct: 158 HTTAMCIRILEDVIKPGDVVFDVGTGSGILAVVAAKLGAGAVYAVDLDPVAVNVAVE 214


>gi|332184033|gb|AEE26287.1| Methyltransferase [Francisella cf. novicida 3523]
          Length = 717

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 20/140 (14%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N N N+I   K   I+ + IS L+    K  D+IF DPP                  + +
Sbjct: 597 NFNLNNIDAKKHNFIQADCISWLKTNKDK-FDVIFLDPP----------------TFSNS 639

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
              D     +         +      LK +G L+   +Y        +L+  N   ++ I
Sbjct: 640 KRMDDILDIQRDHELL---INLAMDSLKKDGVLYFSNNYRRFKISPQILEKFNCENIDKI 696

Query: 130 VWRKSNPMPNFRGRRFQNAH 149
              +           ++  +
Sbjct: 697 CLSRDFLSNKSIHNCWEIKY 716


>gi|316984047|gb|EFV63025.1| type III restriction-modification system EcoPI enzyme mod domain
          protein [Neisseria meningitidis H44/76]
          Length = 68

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 7/50 (14%)

Query: 2  SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPP 48
            K   A  EN  S    ++ +I+G+++ VL+ L      SV +I+ DPP
Sbjct: 23 EDKTHNAKPENAGS----QNLLIRGDNLEVLKHLKNAYTNSVKMIYIDPP 68


>gi|255524750|ref|ZP_05391701.1| DNA methylase N-4/N-6 domain protein [Clostridium carboxidivorans
           P7]
 gi|255511523|gb|EET87812.1| DNA methylase N-4/N-6 domain protein [Clostridium carboxidivorans
           P7]
          Length = 317

 Score = 44.2 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 14/84 (16%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTK--PGDIILDPFFGSGTSGAV-----AKKLR-RSFIG 250
           DG K+    KP   + R++  S      DIILD F GS ++        A  L  R FI 
Sbjct: 71  DGIKVFDYSKPIDFIQRLICISPNANNEDIILDFFSGSASTANAVMSINADDLGKRRFIM 130

Query: 251 IEM------KQDYIDIATKRIASV 268
           I++        +      K I  +
Sbjct: 131 IQLPEQTDENSEACKAGYKNICEI 154


>gi|150400710|ref|YP_001324476.1| protein of unknown function Met10 [Methanococcus aeolicus Nankai-3]
 gi|150013413|gb|ABR55864.1| protein of unknown function Met10 [Methanococcus aeolicus Nankai-3]
          Length = 355

 Score = 44.2 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 16/129 (12%)

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
           ++   KP DI++D F G G      K  +     I++  D +++  K I           
Sbjct: 210 IMEKVKPEDIVVDMFCGVGPFSIACKNAK-KIYAIDINPDAVELLKKNIK---------- 258

Query: 277 TVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGA 336
                K     +  N  + +  ++  +I+ N      A +  D  L    + G IH    
Sbjct: 259 ---LNKLQHKIIPINNDIRKTEVKGNRIIMNLPK--FAHLFVDTALKMVEKNGIIHYYTV 313

Query: 337 KVSGSETCN 345
               +E  N
Sbjct: 314 GTDYNEAIN 322


>gi|239622098|ref|ZP_04665129.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239515289|gb|EEQ55156.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 822

 Score = 43.8 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 13/97 (13%)

Query: 280 TGKRTEPRVAFNLLVERGLIQPGQILTNAQGNIS--ATVCADG--TLISGTELGSI---- 331
            G+R +  V F  L +RG++  G  L +    I+  ATV  D    L +G   GS     
Sbjct: 584 QGEREQNAVDFADLCKRGILAAGAALESRYAGITAMATVTEDHRIRLSNGEIFGSPSGAF 643

Query: 332 --HRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRI 366
              R+       +  NGW  W       L   + LR 
Sbjct: 644 RRARMLETGENKQINNGWTVWKVADGRTL---DELRQ 677


>gi|283833768|ref|ZP_06353509.1| putative methylase [Citrobacter youngae ATCC 29220]
 gi|291070429|gb|EFE08538.1| putative methylase [Citrobacter youngae ATCC 29220]
          Length = 702

 Score = 43.8 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + +  L     +  DLIF DPP         +     + D+     D       
Sbjct: 591 HRLIQADCLGWLRD-ANEQFDLIFIDPP--------TFSNSKRMEDSFDVQRD------- 634

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           + A  R      +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 635 HLALMRD----LKRLLRKEGTIMFSNNKRGFRMDLDGLAELG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|296109231|ref|YP_003616180.1| putative RNA methylase [Methanocaldococcus infernus ME]
 gi|295434045|gb|ADG13216.1| putative RNA methylase [Methanocaldococcus infernus ME]
          Length = 341

 Score = 43.8 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 5/107 (4%)

Query: 203 LHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
            HP      L   ++ ++  K  DI+LDPF G+G     A  L    IG ++      ++
Sbjct: 175 FHPGCIMPKLARAMVNLARVKENDIVLDPFCGTGGFLIEAGLLGAKLIGCDID---WRMS 231

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNA 308
              + +++   N+   V+  K  + +   + L E  + +   I+T+ 
Sbjct: 232 RGTLINLEDY-NLLNNVIKIKTLDAKYVKDFLRELNIDKVDAIVTDP 277



 Score = 36.5 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 12/27 (44%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQLNGQ 56
             L +L    VD I  DPPY +    +
Sbjct: 260 DFLRELNIDKVDAIVTDPPYGISTAKK 286


>gi|77165697|ref|YP_344222.1| UbiE/COQ5 methyltransferase [Nitrosococcus oceani ATCC 19707]
 gi|254434045|ref|ZP_05047553.1| methyltransferase, UbiE/COQ5 family [Nitrosococcus oceani AFC27]
 gi|76884011|gb|ABA58692.1| UbiE/COQ5 methyltransferase [Nitrosococcus oceani ATCC 19707]
 gi|207090378|gb|EDZ67649.1| methyltransferase, UbiE/COQ5 family [Nitrosococcus oceani AFC27]
          Length = 232

 Score = 43.8 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 4/115 (3%)

Query: 214 SRILVSSTKPGDIILDPFFGSG--TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
            R++         ILD   G+G  T    ++      +G+E++++Y+ IA +++  +  L
Sbjct: 40  RRMVNLMPPNASRILDLACGTGISTLAIASRYPGCQVVGVELREEYLKIARQKVQRL-GL 98

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGT 326
            NIEL +   +       F+  +    +     L +   N  A +   G L+   
Sbjct: 99  KNIELVLSRAEDYRSEEPFD-CISSSYLAKYAELRSLTHNNKAMLKEGGLLLMHD 152


>gi|89076235|ref|ZP_01162583.1| hypothetical N6-adenine-specific DNA methylase [Photobacterium sp.
           SKA34]
 gi|89048064|gb|EAR53651.1| hypothetical N6-adenine-specific DNA methylase [Photobacterium sp.
           SKA34]
          Length = 712

 Score = 43.8 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 46/139 (33%), Gaps = 28/139 (20%)

Query: 17  FEWKDKI------IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
            E  ++I      ++ + +  L+++   + DLIF DPP         +     +      
Sbjct: 589 MELNNQIGPQHEYVQADCLQWLQEVDD-TFDLIFIDPP--------TFSNSKRMKQTFDI 639

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
             D     E             +R+L+P+G +    +          +  L     N  +
Sbjct: 640 QRDHIMLME-----------NLKRMLRPDGQIVFSNNKRQFKMDLDKINELGLQAKN--I 686

Query: 131 WRKSNPMPNFRGRRFQNAH 149
             K+ PM   + ++  N  
Sbjct: 687 SNKTLPMDFAKNKQIHNCW 705


>gi|170754291|ref|YP_001782171.1| O-methyltransferase family protein [Clostridium botulinum B1 str.
           Okra]
 gi|169119503|gb|ACA43339.1| O-methyltransferase family protein [Clostridium botulinum B1 str.
           Okra]
          Length = 218

 Score = 43.8 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 6   SLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
            +A +  +   F+ K KII+G+ + +L+ L  K  D+IF D
Sbjct: 94  EIAKDNIEKYSFKDKIKIIQGDCLEILKNLEDKY-DMIFMD 133


>gi|28210764|ref|NP_781708.1| caffeoyl-CoA O-methyltransferase [Clostridium tetani E88]
 gi|28203202|gb|AAO35645.1| caffeoyl-coA O-methyltransferase [Clostridium tetani E88]
          Length = 215

 Score = 43.8 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 2/38 (5%)

Query: 10  NEN-QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
           NEN + S +E K KI++G+ + VL K+  +  DLIF D
Sbjct: 97  NENIKKSGYEEKIKIVEGDCLEVLSKI-DEKFDLIFMD 133


>gi|288560696|ref|YP_003424182.1| RNA methylase [Methanobrevibacter ruminantium M1]
 gi|288543406|gb|ADC47290.1| RNA methylase [Methanobrevibacter ruminantium M1]
          Length = 344

 Score = 43.8 bits (102), Expect = 0.040,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 9/78 (11%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEAL-------LSRILVSST--KPGDIILDPFFGSGT 236
           I +C G  +L  K  E++ P ++P          L+R +V+ +  K GD++LDPF G+G 
Sbjct: 147 IYLCYGKYQLNKKYFEEMKPHKRPFFHPGCMSPKLARCMVNLSRVKEGDLVLDPFCGTGG 206

Query: 237 SGAVAKKLRRSFIGIEMK 254
               A  +    +G ++ 
Sbjct: 207 ILIEAGLIGAKVVGCDID 224


>gi|303287789|ref|XP_003063183.1| DNA methyltransferase [Micromonas pusilla CCMP1545]
 gi|226455015|gb|EEH52319.1| DNA methyltransferase [Micromonas pusilla CCMP1545]
          Length = 580

 Score = 43.8 bits (102), Expect = 0.040,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
           PG  +LDPF G GT+  V     R+  G+++      +A  R  + +P G      L   
Sbjct: 167 PGRALLDPFAGGGTTLVVGMADGRATKGVDVSPLACAVAAHR--AWRPSGGDATLALM-- 222

Query: 283 RTEPRVAFNLLVERGLIQPGQ 303
               R A   +VER  +  G+
Sbjct: 223 ----RDAARAVVERMDVTAGE 239


>gi|307331758|ref|ZP_07610861.1| DNA methylase N-4/N-6 [Streptomyces violaceusniger Tu 4113]
 gi|306882571|gb|EFN13654.1| DNA methylase N-4/N-6 [Streptomyces violaceusniger Tu 4113]
          Length = 60

 Score = 43.8 bits (102), Expect = 0.040,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRI-LVSSTKPGDIILDPFFGSGTSGA 239
           W +P  +   +   +  +  H    PE L   + ++    P  I+LDPF G+GT+ A
Sbjct: 2   WTVP--TTPLKPPTELEDARHFAAMPETLTQHLPILGYAPPLGIVLDPFGGTGTTTA 56


>gi|212633321|ref|YP_002309846.1| ribosomal protein L11 methyltransferase [Shewanella piezotolerans
           WP3]
 gi|226710113|sp|B8CHY3|PRMA_SHEPW RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|212554805|gb|ACJ27259.1| Ribosomal protein L11 methyltransferase [Shewanella piezotolerans
           WP3]
          Length = 293

 Score = 43.8 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 54/168 (32%), Gaps = 12/168 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  +K  +      S   IP  +    + +     G   HPT    AL    
Sbjct: 95  WEREWMDNFHPIKFGDRLWICPSWREIPDPTAVNVILDPGLAFGTGTHPTT---ALCLEW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L         ++D   GSG     A KL      G+++    I+ +    A+ +  G  +
Sbjct: 152 LDGLDYRNKDVIDFGCGSGILAVAALKLGAEKVTGVDIDYQAIEASK---ANAERNGVED 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
              L     +P      ++   ++     L      I+  V   G L 
Sbjct: 209 QLALYLPEDQPEGLIADILVANIL--AGPLRELAPLIAEKVKPGGQLA 254


>gi|170761383|ref|YP_001787809.1| putative methyltransferase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408372|gb|ACA56783.1| RNA methyltransferase, RsmD family [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 185

 Score = 43.8 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSV--DLIFADPPY 49
            +   L     +N  FE   K    ++ + LE+  +KS+  DLIF DPPY
Sbjct: 74  PETYPLLRENIKNLKFEDLCKSFNMDAYTALEEFASKSIVFDLIFIDPPY 123


>gi|194337160|ref|YP_002018954.1| hypothetical protein Ppha_2132 [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194309637|gb|ACF44337.1| conserved hypothetical protein [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 1118

 Score = 43.8 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 43/140 (30%), Gaps = 29/140 (20%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNL------------------------QLNGQL 57
           KI+  +S   L  + + S+DL+  DPP+                             G  
Sbjct: 702 KILCSSSTD-LALVTSGSIDLVITDPPFGGLLHYSELSDFFYVWLRLALKDRYPDYFGTE 760

Query: 58  YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNIFRIGT 116
           Y P  SL      + +   S   Y            R+LKP GTL +      N   +  
Sbjct: 761 YTPK-SLEAVANKAREPEDSDGYYQRLLTQCWREAYRILKPGGTLAFTFHHSENNPWVAV 819

Query: 117 M--LQNLNFWILNDIVWRKS 134
           +  L    F++      R  
Sbjct: 820 LESLFGAGFYLEATYPIRSD 839


>gi|167582761|ref|ZP_02375635.1| site-specific DNA methyltransferase [Burkholderia thailandensis
          TXDOH]
          Length = 70

 Score = 43.8 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 26 GNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDAVT 69
           + +++   LP  S+D++F D PY    L  + +   P    +++ T
Sbjct: 1  MDVLTLARMLPDASIDMVFTDLPYSSGGLHTSARTRPPSEKYINSGT 47


>gi|284097716|ref|ZP_06385728.1| DNA modification methyltransferase [Candidatus Poribacteria sp.
           WGA-A3]
 gi|283830773|gb|EFC34871.1| DNA modification methyltransferase [Candidatus Poribacteria sp.
           WGA-A3]
          Length = 272

 Score = 43.8 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 15/28 (53%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY 49
           ++   ++  + E L  +SVD +   PPY
Sbjct: 82  QVFLADARQIPEILEPESVDAVITSPPY 109


>gi|261344264|ref|ZP_05971908.1| putative methylase [Providencia rustigianii DSM 4541]
 gi|282567866|gb|EFB73401.1| putative methylase [Providencia rustigianii DSM 4541]
          Length = 702

 Score = 43.8 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 44/140 (31%), Gaps = 22/140 (15%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++++ + +S L     +  DLIF DPP            +   +D   
Sbjct: 579 NLQANQLTGRQHRLMQADCLSWLAN-SDEQFDLIFIDPP---------TFSNSKRMDGTF 628

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
           D                  +   +R+L+  GT+    +          L  L   +    
Sbjct: 629 DVQRDHVQL----------ITHLKRMLRRGGTVMFSNNKRGFKMDMDALNELG--LKAQE 676

Query: 130 VWRKSNPMPNFRGRRFQNAH 149
           +  K+      R R+  N  
Sbjct: 677 ITAKTRSEDFARNRQIHNCW 696


>gi|118375695|ref|XP_001021031.1| methyltransferase, putative [Tetrahymena thermophila]
 gi|89302798|gb|EAS00786.1| methyltransferase, putative [Tetrahymena thermophila SB210]
          Length = 280

 Score = 43.8 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 210 EALLSRILVSSTKPGD---IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           E L  R +     P     +ILD   GSG SGA   +    ++GI++ +D +++A +R
Sbjct: 30  EQLTERCIELLNIPEGEDQLILDIGCGSGLSGAQLSEHNHHWVGIDISRDMLNVAVER 87


>gi|16330344|ref|NP_441072.1| hypothetical protein sll1693 [Synechocystis sp. PCC 6803]
 gi|1652833|dbj|BAA17752.1| sll1693 [Synechocystis sp. PCC 6803]
          Length = 440

 Score = 43.8 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 4/108 (3%)

Query: 223 PGDIILDPFFGSG-TSGAVAKKL-RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
              ++LD   G+G T+  +A        +GI++  + I IA +R+     + N E  VL 
Sbjct: 58  ENRVMLDVACGTGATTLTMALANPGAKVVGIDISPESIKIAEERLQ-YHKIDNSEFHVLA 116

Query: 281 GKR-TEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTE 327
            +   +    F+ +    ++     LT A   + A +  DG +     
Sbjct: 117 LEDLDQLGQKFDYISASDILYLLPDLTLALQQLRAILKPDGIIRGNLH 164


>gi|323183999|gb|EFZ69381.1| hemagglutinin-associated domain protein [Escherichia coli 1357]
          Length = 49

 Score = 43.8 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
             A +  R +IGIE+ + Y     +R+A+VQ
Sbjct: 1   MAALQSGRRYIGIELLEQYHRAGQQRLAAVQ 31


>gi|167618631|ref|ZP_02387262.1| ribosomal protein L11 methyltransferase [Burkholderia thailandensis
           Bt4]
          Length = 300

 Score = 43.8 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L    L  + +PG  +LD   GSG    +AKK    +  GI++    +
Sbjct: 145 GTGSHPTTR---LCMEWLEQTVQPGQTVLDYGCGSGILAILAKKCGAGNVTGIDIDPQAV 201

Query: 259 DIATK 263
           + A +
Sbjct: 202 EAARQ 206


>gi|153002466|ref|YP_001368147.1| ribosomal protein L11 methyltransferase [Shewanella baltica OS185]
 gi|166223438|sp|A6WTE5|PRMA_SHEB8 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|151367084|gb|ABS10084.1| ribosomal protein L11 methyltransferase [Shewanella baltica OS185]
          Length = 293

 Score = 43.8 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 7/108 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   IP  +    + +     G   HPT    AL    
Sbjct: 95  WVREWMDNFHPIQFGTRLWICPSWREIPDPTAVNVILDPGLAFGTGTHPTT---ALCLEW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           L S       ++D   GSG     A KL  ++  GI++    ID +  
Sbjct: 152 LDSLDLSNKEVIDFGCGSGILAVAALKLGAKNVTGIDIDYQAIDASRA 199


>gi|83719303|ref|YP_441708.1| ribosomal protein L11 methyltransferase [Burkholderia thailandensis
           E264]
 gi|167580522|ref|ZP_02373396.1| ribosomal protein L11 methyltransferase [Burkholderia thailandensis
           TXDOH]
 gi|123537576|sp|Q2SZE1|PRMA_BURTA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|83653128|gb|ABC37191.1| ribosomal protein L11 methyltransferase [Burkholderia thailandensis
           E264]
          Length = 300

 Score = 43.8 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L    L  + +PG  +LD   GSG    +AKK    +  GI++    +
Sbjct: 145 GTGSHPTTR---LCMEWLEQTVQPGQTVLDYGCGSGILAILAKKCGAGNVTGIDIDPQAV 201

Query: 259 DIATK 263
           + A +
Sbjct: 202 EAARQ 206


>gi|322806761|emb|CBZ04330.1| ribosomal RNA small subunit methyltransferase D [Clostridium
           botulinum H04402 065]
          Length = 185

 Score = 43.8 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSV--DLIFADPPY 49
            +   L     +N  FE   K    ++ S LE+  +KS+  DLIF DPPY
Sbjct: 74  PETYPLLRENIKNLKFEDLCKSFNMDAYSALEEFASKSIVFDLIFIDPPY 123


>gi|260578138|ref|ZP_05846059.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC
           43734]
 gi|258603777|gb|EEW17033.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC
           43734]
          Length = 695

 Score = 43.8 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 38/110 (34%), Gaps = 5/110 (4%)

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNIS--ATV 316
           ++       +     +    +         +    VE GL++ G +L     +    A V
Sbjct: 583 EVIRDAFGQISDGSGVHSDPMPEVEIPKGRSLQEFVEAGLLREGDLLDPVDPDWVVDAVV 642

Query: 317 CADGTLISGTELG--SIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTL 364
            ADG ++        S+    A+  G    +G +FW  +    L  ++ L
Sbjct: 643 TADGQVLINGVNTYESL-DAAARALGVSNLSGEDFWALQDGNNLIPLSKL 691


>gi|20094695|ref|NP_614542.1| DNA methylase containing a Zn-ribbon module [Methanopyrus kandleri
           AV19]
 gi|19887865|gb|AAM02472.1| Predicted DNA methylase containing a Zn-ribbon module [Methanopyrus
           kandleri AV19]
          Length = 948

 Score = 43.8 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 77/240 (32%), Gaps = 50/240 (20%)

Query: 22  KIIKGNSISV---LEKLPAKSVDLIFADPPY--NLQL----------------------- 53
           ++I G++ ++   L  L  +SVD I  DPPY  N+Q                        
Sbjct: 498 EVILGDARALPQHLRNLGVESVDAIVVDPPYYDNVQYAELADFFYVWLKRLFGHPTFLVT 557

Query: 54  ----------------NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK 97
                           + +L   D  +V   T   D       Y+   R +L ACR VL 
Sbjct: 558 ISRSSPESAMEFQRAFSNELTPKDEEIVANRTRHDD---PEREYERGLREFLEACREVLP 614

Query: 98  PNGTL---WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
            +G L   +   +      +   L++  F I      R  +     +  +       +I 
Sbjct: 615 EHGRLTLMFTHKATEAWTSLVRALRDAGFEITEVWPVRTESEHSLHQRWKAAVGTTQIIA 674

Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
             P   ++  T+     +      +        + S +ERL    G  L P  + + +L 
Sbjct: 675 CRPRSGSEVTTWRRVRDEVRRNVREAFRRAADLVFSDAERLVVARGAALRPYTRYDKVLR 734


>gi|217420963|ref|ZP_03452468.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           576]
 gi|254199088|ref|ZP_04905503.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           S13]
 gi|169656918|gb|EDS88315.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           S13]
 gi|217396375|gb|EEC36392.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           576]
          Length = 300

 Score = 43.8 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 12/130 (9%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L    L  + +PG  +LD   GSG    +AKK       GI++    +
Sbjct: 145 GTGSHPTTR---LCMEWLEQTVQPGQTVLDYGCGSGILAILAKKCGAGHVTGIDIDPQAV 201

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + A  R  S +   ++   +       P   F+++V   L  P +++ +    +++ V  
Sbjct: 202 EAA--RHNSERNRADVTYGLPDD---CPDGEFDIVVANILSNPLKLMASM---LASKVKP 253

Query: 319 DGTLISGTEL 328
            G +     L
Sbjct: 254 GGRIALSGVL 263


>gi|90581289|ref|ZP_01237086.1| ribosomal protein L11 methyltransferase [Vibrio angustum S14]
 gi|90437528|gb|EAS62722.1| ribosomal protein L11 methyltransferase [Vibrio angustum S14]
          Length = 294

 Score = 43.8 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 35/108 (32%), Gaps = 7/108 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S    P       L +     G   HPT    +L    
Sbjct: 96  WEREWMDNFHPMRFGRRLWICPSWREAPEPGAVNVLLDPGLAFGTGTHPTT---SLCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           L S    G  ++D   GSG     A KL     IGI++    I  +  
Sbjct: 153 LDSQDLTGKTVIDFGCGSGILAIAALKLGAAKVIGIDIDPQAILASRD 200


>gi|188590046|ref|YP_001921146.1| putative modification methylase [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188500327|gb|ACD53463.1| putative modification methylase [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 453

 Score = 43.8 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 5/80 (6%)

Query: 5   NSLAINENQNSIFEW---KDKIIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRP 60
           N   I  ++   + +   K+ I  GNS  +++      S+ LI   PPY        Y  
Sbjct: 225 NENLILSDKTYTYNYLKEKN-IYLGNSFDIIKSDFKDNSIGLIITSPPYGDNPTTVTYGQ 283

Query: 61  DHSLVDAVTDSWDKFSSFEA 80
              L     D  D   S E 
Sbjct: 284 FSILPLRWIDIKDLDVSIEE 303



 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 10/75 (13%)

Query: 191 GSERLRNKDGEKLH-------PTQKPEAL---LSRILVSSTKPGDIILDPFFGSGTSGAV 240
            SE    K+ +K H       P     A+   +  I++      + +LDPF GSGT    
Sbjct: 19  NSEYWDFKEAKKDHIHGIFTYPATMVPAMQSEILNIILKCNPNINSLLDPFMGSGTMLVE 78

Query: 241 AKKLRRSFIGIEMKQ 255
                 +  GI++  
Sbjct: 79  GMMHNLNIYGIDINP 93


>gi|168182571|ref|ZP_02617235.1| RNA methyltransferase, RsmD family [Clostridium botulinum Bf]
 gi|237795933|ref|YP_002863485.1| RsmD family RNA methyltransferase [Clostridium botulinum Ba4 str.
           657]
 gi|182674241|gb|EDT86202.1| RNA methyltransferase, RsmD family [Clostridium botulinum Bf]
 gi|229261371|gb|ACQ52404.1| RNA methyltransferase, RsmD family [Clostridium botulinum Ba4 str.
           657]
          Length = 185

 Score = 43.8 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSV--DLIFADPPY 49
            +   L     +N  FE   K    ++ S LE+  +KS+  DLIF DPPY
Sbjct: 74  PETYPLLRENIKNLKFEDLCKSFNMDAYSALEEFASKSIVFDLIFIDPPY 123


>gi|18977399|ref|NP_578756.1| hypothetical protein PF1027 [Pyrococcus furiosus DSM 3638]
 gi|18893086|gb|AAL81151.1| hypothetical protein PF1027 [Pyrococcus furiosus DSM 3638]
          Length = 373

 Score = 43.8 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 8/113 (7%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           P  L   ++  S      +LDPF G+GT             G ++ Q+ I+ A K I  +
Sbjct: 185 PPRLARIMINLSEVRKGNVLDPFCGTGTILVELLLQGLIAYGSDISQERINDARKNIEWI 244

Query: 269 QPLGNIELTV------LTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
           +    I+         +   +   R  F+ ++    +  G+ L        A 
Sbjct: 245 RKEFRIKQNASLRVCDVRRLKKCFRTRFDAIITEPYM--GRPLKTKPTREEAI 295


>gi|225620631|ref|YP_002721889.1| PspGI methylase [Brachyspira hyodysenteriae WA1]
 gi|225215451|gb|ACN84185.1| PspGI methylase [Brachyspira hyodysenteriae WA1]
          Length = 480

 Score = 43.8 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 12  NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN 50
           N+N I   K KI   N I + + +P  SVDL+   PPY 
Sbjct: 275 NKNGITS-KVKIFNNNVIDLFD-IPDSSVDLVVTSPPYG 311



 Score = 37.7 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 6/82 (7%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL--VSSTKPGDIILDPFFGSGTSGAVA 241
           W     +  E   +      +P      +   I+  V      D +LDPF GSGT     
Sbjct: 28  WDFKYENTKEYTHSMHS---YPAVMVAPISRNIINIVKQVMEVDSLLDPFSGSGTVLVEG 84

Query: 242 KKLR-RSFIGIEMKQDYIDIAT 262
                ++  G ++    I I+ 
Sbjct: 85  MLANIKNVYGNDINPLAIFISK 106


>gi|315178394|gb|ADT85308.1| ribosomal protein L11 methyltransferase [Vibrio furnissii NCTC
           11218]
          Length = 295

 Score = 43.8 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 55/163 (33%), Gaps = 21/163 (12%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P       + +     G   HPT    AL    
Sbjct: 96  WEREWMDNFHPMQFGKRLWICPSWRDVPDPDAVNVMLDPGLAFGTGTHPTT---ALCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI-------------DIAT 262
           L S    G  ++D   GSG     A KL     IGI++    +             D+  
Sbjct: 153 LDSLDLSGKTVIDFGCGSGILAIAAIKLGAAKVIGIDIDPQALLASKDNASRNGVEDLIE 212

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL 305
             +   QP G +   V+      P    + +++  L++P  +L
Sbjct: 213 VYLPKDQPEGLVADVVVANILAGPLRELSPVIKS-LMKPNGLL 254


>gi|291541913|emb|CBL15023.1| ribosomal protein L11 methyltransferase [Ruminococcus bromii L2-63]
          Length = 311

 Score = 43.8 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 3/119 (2%)

Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
            H   +        +     Y       E + +R  W     +G+ ++ N D      T 
Sbjct: 93  KHSIELLDCLEEDWRNNWKKYFNPIEVGEKLLIRPSWRDDYDAGNRKVLNIDPGLAFGTG 152

Query: 208 KPE--ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYIDIATK 263
             E   L   +     K GD +LD   GSG  G     L     +G+++ +  +  A +
Sbjct: 153 GHETTRLCLEMCEKYLKEGDSVLDVGCGSGILGIATLLLGADRAVGVDIDETAVRTAAE 211


>gi|260770654|ref|ZP_05879585.1| ribosomal protein L11 methyltransferase [Vibrio furnissii CIP
           102972]
 gi|260614380|gb|EEX39568.1| ribosomal protein L11 methyltransferase [Vibrio furnissii CIP
           102972]
          Length = 295

 Score = 43.8 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 55/163 (33%), Gaps = 21/163 (12%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P       + +     G   HPT    AL    
Sbjct: 96  WEREWMDNFHPMQFGKRLWICPSWRDVPDPDAVNVMLDPGLAFGTGTHPTT---ALCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI-------------DIAT 262
           L S    G  ++D   GSG     A KL     IGI++    +             D+  
Sbjct: 153 LDSLDLSGKTVIDFGCGSGILAIAAIKLGAAKVIGIDIDPQALLASKDNASRNGVEDLIE 212

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL 305
             +   QP G +   V+      P    + +++  L++P  +L
Sbjct: 213 VYLPKDQPEGLVADVVVANILAGPLRELSPVIKS-LMKPNGLL 254


>gi|218130522|ref|ZP_03459326.1| hypothetical protein BACEGG_02111 [Bacteroides eggerthii DSM 20697]
 gi|217987308|gb|EEC53638.1| hypothetical protein BACEGG_02111 [Bacteroides eggerthii DSM 20697]
          Length = 441

 Score = 43.8 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 207 QKPEALLSRILVSSTKP--GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           Q    LL + ++   KP     ILDPF G GT+   +       IG ++    I  A  +
Sbjct: 63  QGYSELLVKHIIDEAKPLKEHYILDPFCGVGTTNLTSVNRGYKTIGFDINPMAILTAKAK 122

Query: 265 IASVQP 270
                P
Sbjct: 123 THHYTP 128


>gi|168180623|ref|ZP_02615287.1| putative methyltransferase [Clostridium botulinum NCTC 2916]
 gi|226949847|ref|YP_002804938.1| putative methyltransferase [Clostridium botulinum A2 str. Kyoto]
 gi|182668549|gb|EDT80528.1| putative methyltransferase [Clostridium botulinum NCTC 2916]
 gi|226841020|gb|ACO83686.1| putative methyltransferase [Clostridium botulinum A2 str. Kyoto]
          Length = 185

 Score = 43.8 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSV--DLIFADPPY 49
            +   L     +N  FE   K    ++ S LE+  +KS+  DLIF DPPY
Sbjct: 74  PETYPLLRENIKNLKFEDLCKSFNMDAYSALEEFASKSIVFDLIFIDPPY 123


>gi|144574983|gb|AAZ43581.2| putative type III restriction-modification system: methylase
           [Mycoplasma synoviae 53]
          Length = 392

 Score = 43.8 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           G E +   + + +    KP  L+  +L  S      +LD F G GT+G   + L 
Sbjct: 227 GKEIIEIFENKNVFDFPKPPDLIKYLLSFSNNKNARVLDFFAGGGTTGHAVEDLN 281


>gi|304310432|ref|YP_003810030.1| hypothetical protein HDN1F_07880 [gamma proteobacterium HdN1]
 gi|301796165|emb|CBL44371.1| conserved hypothetical protein [gamma proteobacterium HdN1]
          Length = 267

 Score = 43.8 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
           E + ++I G+S   +  LP  S D I  DPP
Sbjct: 167 EERYQLINGDSSQEIHSLPDASFDAILHDPP 197


>gi|119504514|ref|ZP_01626593.1| hypothetical protein MGP2080_12948 [marine gamma proteobacterium
           HTCC2080]
 gi|119459536|gb|EAW40632.1| hypothetical protein MGP2080_12948 [marine gamma proteobacterium
           HTCC2080]
          Length = 707

 Score = 43.8 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 49/136 (36%), Gaps = 24/136 (17%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N + E + ++++ + ++ LE    +  DL+  DPP              S   A   + D
Sbjct: 590 NGLSERQHRVVRADCLTWLEAC-DRKFDLVLLDPP------------SFSNSKATEGTLD 636

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                          + A   VL  +GTL+    + N  R   + ++L      + + R+
Sbjct: 637 IIRD-------QAELVDAAMSVLNSDGTLY----FSNNHRRFELAEDLKQRYRVEDITRQ 685

Query: 134 SNPMPNFRGRRFQNAH 149
           + P    R +   +  
Sbjct: 686 TIPEDFKRRKDIHHCW 701


>gi|271500188|ref|YP_003333213.1| putative RNA methylase [Dickeya dadantii Ech586]
 gi|270343743|gb|ACZ76508.1| putative RNA methylase [Dickeya dadantii Ech586]
          Length = 707

 Score = 43.4 bits (101), Expect = 0.050,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 36/102 (35%), Gaps = 20/102 (19%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++I  + ++ + +   +  DLIF DPP         +     + ++  
Sbjct: 581 NLRLNGLTGRQHRLIHADCLAWMRE-THEQFDLIFIDPP--------TFSNSKRMDESFD 631

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
              D               +   +R+L+P GT+    +    
Sbjct: 632 VQRDHLM-----------LMTQLKRLLRPRGTILFSNNKRGF 662


>gi|251789291|ref|YP_003004012.1| 23S rRNA m(2)G2445 methyltransferase [Dickeya zeae Ech1591]
 gi|247537912|gb|ACT06533.1| putative RNA methylase [Dickeya zeae Ech1591]
          Length = 707

 Score = 43.4 bits (101), Expect = 0.050,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 36/102 (35%), Gaps = 20/102 (19%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++I  + ++ + +   +  DLIF DPP         +     + ++  
Sbjct: 581 NLRLNGLTGRQHRLIHADCLAWMRE-THEQFDLIFIDPP--------TFSNSKRMDESFD 631

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
              D               +   +R+L+P GT+    +    
Sbjct: 632 VQRDHLM-----------LMTQLKRLLRPRGTILFSNNKRGF 662


>gi|18314104|ref|NP_560771.1| hypothetical protein PAE3486 [Pyrobaculum aerophilum str. IM2]
 gi|18161689|gb|AAL64953.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
          Length = 286

 Score = 43.4 bits (101), Expect = 0.050,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 6/115 (5%)

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
               K Y   Y      N        W +P+ +            +     PE ++ R+L
Sbjct: 26  HTVYKFYQRLYKEGVVLNVAEPPPWLWDLPLINIYNTDVIGFMYDVPFVATPEVVVRRML 85

Query: 218 -VSSTKPGDIILDPFFGSG---TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            ++  +PG+++ D   GSG        AK+      G+E+++D  + +  RI  +
Sbjct: 86  QLARVQPGEVLYD--LGSGDGRIVIIAAKEFGARAFGVEIRKDLFEQSMARIKDM 138


>gi|33595018|ref|NP_882661.1| putative DNA methylase [Bordetella parapertussis 12822]
 gi|33565094|emb|CAE40045.1| putative DNA methylase [Bordetella parapertussis]
          Length = 731

 Score = 43.4 bits (101), Expect = 0.051,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 43/125 (34%), Gaps = 43/125 (34%)

Query: 27  NSISVLEK-------------LPAKSVDLIFADPPY--NLQLN---GQLYRPDHSLVDAV 68
           +++++L +              P  S D I  DPPY  N+  +      Y     L+DA+
Sbjct: 467 DALALLRRPVQVQRASAAALPYPDDSFDAIVTDPPYYDNIFYSVLADFFYTWKKPLIDAI 526

Query: 69  -------------TDSWDKF------------SSFEAYDAFTRAWLLACRRVLKPNGTLW 103
                            D+             ++ + Y A     L    RVLKP+G L 
Sbjct: 527 ENRPTTPPHAPTANSGHDELVASRQRAGGSARAAHDEYCARLGQALREAARVLKPDGLLA 586

Query: 104 VIGSY 108
            + S+
Sbjct: 587 FVYSH 591


>gi|156937981|ref|YP_001435777.1| methyltransferase type 11 [Ignicoccus hospitalis KIN4/I]
 gi|156566965|gb|ABU82370.1| Methyltransferase type 11 [Ignicoccus hospitalis KIN4/I]
          Length = 263

 Score = 43.4 bits (101), Expect = 0.051,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 4/118 (3%)

Query: 182 SDWLIPICSGSERLRN---KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
            DW +          +   +       T    AL++R L S      ++LD   G+G   
Sbjct: 1   MDWTVETWVRWFAYSSLLAEPPSVWASTSSQVALIARALKSHGVRSGLVLDAGCGTGRIT 60

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
               +     +GI++   +++ A +RIA    + N    V+   R  P V  +L  + 
Sbjct: 61  VGLAEYGYEVLGIDISPKFVEEANERIARA-GVENKARCVVGDLRRLPEVVKDLRFDA 117


>gi|148380448|ref|YP_001254989.1| putative methyltransferase [Clostridium botulinum A str. ATCC 3502]
 gi|153934015|ref|YP_001384671.1| putative methyltransferase [Clostridium botulinum A str. ATCC
           19397]
 gi|153937379|ref|YP_001388192.1| putative methyltransferase [Clostridium botulinum A str. Hall]
 gi|148289932|emb|CAL84045.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152930059|gb|ABS35559.1| RNA methyltransferase, RsmD family [Clostridium botulinum A str.
           ATCC 19397]
 gi|152933293|gb|ABS38792.1| RNA methyltransferase, RsmD family [Clostridium botulinum A str.
           Hall]
          Length = 185

 Score = 43.4 bits (101), Expect = 0.051,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSV--DLIFADPPY 49
            +   L     +N  FE   K    ++ S LE+  +KS+  DLIF DPPY
Sbjct: 74  PETYPLLRENIKNLKFEDLCKSFNMDAYSALEEFASKSIVFDLIFIDPPY 123


>gi|218896248|ref|YP_002444659.1| hypothetical protein BCG9842_B4077 [Bacillus cereus G9842]
 gi|218544281|gb|ACK96675.1| conserved hypothetical protein [Bacillus cereus G9842]
          Length = 229

 Score = 43.4 bits (101), Expect = 0.052,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 58/160 (36%), Gaps = 24/160 (15%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L  +  E  +    P  LL  I     +    +LD    SGT GA  K+      GIE  
Sbjct: 8   LYEEKSEHYYNAANP-NLLKHIKKEWKE----VLDIGCSSGTLGAAIKENGTRVSGIEAF 62

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNA---QG 310
            +  + A +R+  V  LG+IE   L  +  +   + F  ++E         L +      
Sbjct: 63  PEAAEKAKERLDHVI-LGDIEKIDLPYEEGQFDCILFGDVLEH--------LFDPWAVIE 113

Query: 311 NISATVCADGTLISGTELGSIHRVGAKVSGSETCNG-WNF 349
            +   +  +G +++     SI  V      +    G W +
Sbjct: 114 KVKPYIKQNGVILA-----SIPNVAHISVLAPLLAGNWTY 148


>gi|195359111|ref|XP_002045296.1| GM19349 [Drosophila sechellia]
 gi|194128964|gb|EDW51007.1| GM19349 [Drosophila sechellia]
          Length = 166

 Score = 43.4 bits (101), Expect = 0.053,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 9/83 (10%)

Query: 191 GSERLRNKDGEKLHPT-----QKPEALLSRILVSSTKPGD----IILDPFFGSGTSGAVA 241
             E   N D  K + T     +    +  R L     P D    +ILD   GSG SG+V 
Sbjct: 10  PPEIFYNDDEAKKYSTNTRIIEIQVEMAERALELLALPDDDESRLILDIGCGSGLSGSVL 69

Query: 242 KKLRRSFIGIEMKQDYIDIATKR 264
           +     +IGI++ +  +DIA +R
Sbjct: 70  EDSEHMWIGIDISKSMLDIAVER 92


>gi|45357712|ref|NP_987269.1| putative RNA methylase [Methanococcus maripaludis S2]
 gi|45047272|emb|CAF29705.1| conserved hypothetical protein [Methanococcus maripaludis S2]
          Length = 350

 Score = 43.4 bits (101), Expect = 0.053,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 5/62 (8%)

Query: 203 LHP-TQKPEALLSRILVSST--KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
            HP    P+  L+R LV+ +  K G+I+LDPF G+G     A  L    IG ++ +  ++
Sbjct: 183 FHPGCIMPK--LARCLVNLSRVKEGEIVLDPFCGTGGFLIEAGFLGCKLIGSDIDEQMVN 240

Query: 260 IA 261
            A
Sbjct: 241 GA 242



 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 32  LEKLPAKSVDLIFADPPYNL--QLNGQLYRPDHSLVDAVTDS 71
           LE L  + +D I  DPPY +     G +      +VD + D+
Sbjct: 270 LEALKIEKIDGIVTDPPYGISTSKKGDMLEIFEKIVDVLKDN 311


>gi|28211651|ref|NP_782595.1| ribosomal protein L11 methyltransferase [Clostridium tetani E88]
 gi|38605254|sp|Q892R2|PRMA_CLOTE RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|28204093|gb|AAO36532.1| ribosomal protein L11 methyltransferase [Clostridium tetani E88]
          Length = 314

 Score = 43.4 bits (101), Expect = 0.053,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 3/106 (2%)

Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILV 218
            +     Y       E + ++  W     +  E +   D      T   E   +    L 
Sbjct: 115 WENNWKKYYKPTKVGEKIVIKPIWEEYGENPEEIILELDPGMAFGTGTHETTRMCIESLE 174

Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
              K  D++ D   GSG  G  A KL  +  IG+++ +  +D A K
Sbjct: 175 KYVKEEDVVFDIGTGSGILGIAAAKLNAKKVIGVDLDEVAVDSAKK 220


>gi|253990230|ref|YP_003041586.1| 23S rRNA m(2)G2445 methyltransferase [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253781680|emb|CAQ84843.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 710

 Score = 43.4 bits (101), Expect = 0.053,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 22/140 (15%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++I+ + +S L +   +  DLIF DPP         +     + D   
Sbjct: 584 NLQANGLTGRQHRLIQADCLSWLAQ-THEQFDLIFIDPP--------TFSNSKRMEDTFD 634

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
              D               +   + +L+  GTL    +        + L+ +   ++ + 
Sbjct: 635 VQRDHIM-----------LMKQLKCLLRRGGTLMFSNNKRGFKMDFSELEKIG--LVAEE 681

Query: 130 VWRKSNPMPNFRGRRFQNAH 149
           +  K+      R R+  N  
Sbjct: 682 ITSKTQSQDFARNRQIHNCW 701


>gi|75759805|ref|ZP_00739882.1| SAM-dependent O-methyltransferase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228899896|ref|ZP_04064140.1| O-antigen biosynthesis protein [Bacillus thuringiensis IBL 4222]
 gi|74492705|gb|EAO55844.1| SAM-dependent O-methyltransferase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228859736|gb|EEN04152.1| O-antigen biosynthesis protein [Bacillus thuringiensis IBL 4222]
          Length = 232

 Score = 43.4 bits (101), Expect = 0.053,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 58/160 (36%), Gaps = 24/160 (15%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L  +  E  +    P  LL  I     +    +LD    SGT GA  K+      GIE  
Sbjct: 11  LYEEKSEHYYNAANP-NLLKHIKKEWKE----VLDIGCSSGTLGAAIKENGTRVSGIEAF 65

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNA---QG 310
            +  + A +R+  V  LG+IE   L  +  +   + F  ++E         L +      
Sbjct: 66  PEAAEKAKERLDHVI-LGDIEKIDLPYEEGQFDCILFGDVLEH--------LFDPWAVIE 116

Query: 311 NISATVCADGTLISGTELGSIHRVGAKVSGSETCNG-WNF 349
            +   +  +G +++     SI  V      +    G W +
Sbjct: 117 KVKPYIKQNGVILA-----SIPNVAHISVLAPLLAGNWTY 151


>gi|125777365|ref|XP_001359583.1| GA10628 [Drosophila pseudoobscura pseudoobscura]
 gi|54639331|gb|EAL28733.1| GA10628 [Drosophila pseudoobscura pseudoobscura]
          Length = 277

 Score = 43.4 bits (101), Expect = 0.053,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 9/83 (10%)

Query: 191 GSERLRNKDGEKLHPT-----QKPEALLSRILVSSTKPGD----IILDPFFGSGTSGAVA 241
             E   N +  K + T     +    +  R L     P D    +ILD   GSG SG+V 
Sbjct: 10  PPEIFYNDNEAKKYSTNTRIIEIQVEMAERALELLAFPDDDESRLILDIGCGSGLSGSVL 69

Query: 242 KKLRRSFIGIEMKQDYIDIATKR 264
           +     +IGI++ +  +DIA +R
Sbjct: 70  EDSDHMWIGIDISKSMLDIAVER 92


>gi|300870591|ref|YP_003785462.1| adenine-specific DNA methylase [Brachyspira pilosicoli 95/1000]
 gi|300688290|gb|ADK30961.1| adenine-specific DNA methylase [Brachyspira pilosicoli 95/1000]
          Length = 478

 Score = 43.4 bits (101), Expect = 0.054,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 5/50 (10%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN 50
           M        N N NS    K KI   N I +   +P  S+DL+   PPY 
Sbjct: 265 MHSFVEACKNNNSNS----KVKIFNNNVIDLFC-IPDSSIDLVITSPPYG 309


>gi|305679811|ref|ZP_07402621.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC
           14266]
 gi|305660431|gb|EFM49928.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC
           14266]
          Length = 490

 Score = 43.4 bits (101), Expect = 0.054,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 207 QKPEALLSRILVSSTKPGD---IILDPFFGSGTSGAVAKKLRRSFI--GIEMKQDYIDIA 261
           Q P AL  R L     P      +L+P  G G     AK+   + I  GI++  DY+ +A
Sbjct: 10  QTPLALARRCLEVLALPQHGPIRVLEPTCGRGAFLRAAKERNPTSIRYGIDINADYVQVA 69

Query: 262 TK 263
             
Sbjct: 70  RN 71


>gi|56461387|ref|YP_156668.1| ribosomal protein L11 methyltransferase [Idiomarina loihiensis
           L2TR]
 gi|81821667|sp|Q5QVT9|PRMA_IDILO RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|56180397|gb|AAV83119.1| Ribosomal protein L11 methylase [Idiomarina loihiensis L2TR]
          Length = 293

 Score = 43.4 bits (101), Expect = 0.054,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 8/133 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   IP       L +     G   HPT    A+  R 
Sbjct: 95  WEREWMDNFHPIQFGENLWICPSWREIPKPEAVNILLDPGMAFGTGTHPTT---AMCLRW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           + ++   G  ++D   GSG  G  A   +    +GI++ Q  + IATK  A    +G+  
Sbjct: 152 IDANPPTGKTVVDFGCGSGILGIAALLFKAEHVVGIDIDQQAL-IATKDNAERNKVGDKF 210

Query: 276 LTVLTGKRTEPRV 288
              L  ++ E +V
Sbjct: 211 SLYLPSQQPETQV 223


>gi|192362123|ref|YP_001982061.1| type III restriction-modification system methyltransferase
           [Cellvibrio japonicus Ueda107]
 gi|190688288|gb|ACE85966.1| type III restriction-modification system methyltransferase
           [Cellvibrio japonicus Ueda107]
          Length = 278

 Score = 43.4 bits (101), Expect = 0.054,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 21/80 (26%)

Query: 208 KPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEM------K 254
           KP  L+  ++ VS  +  DIILD F GS T+     +L       R FI +++       
Sbjct: 36  KPSTLIKYLMEVSKVRNNDIILDFFAGSATTAHAVMQLNAEDNGNRRFIMVQLPEPTPED 95

Query: 255 QDY--------IDIATKRIA 266
            +          DI+ KRI 
Sbjct: 96  SEARKAGFNTIADISRKRIE 115


>gi|227890942|ref|ZP_04008747.1| cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus
           salivarius ATCC 11741]
 gi|227867351|gb|EEJ74772.1| cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus
           salivarius ATCC 11741]
          Length = 391

 Score = 43.4 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 66/176 (37%), Gaps = 14/176 (7%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA-VAK 242
           WL    + S     K  + L   Q    +   +     KPG  +LD   G GT     A+
Sbjct: 126 WLDKTMTYSCAYFEKPDDSLEEAQMN-KVHHILKKLDPKPGSSLLDIGCGWGTLMLTAAR 184

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLI-QP 301
           +   + +GI + ++  +   +RI   + L N    +L   R    + F+ +   G+    
Sbjct: 185 EYNMNVVGITLSEEQYNAVKQRIKD-EGLENQAEVLLEDYRELDHLPFDYITSVGMFEHV 243

Query: 302 GQILTNAQGN-ISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLG 356
           G+       N IS  + ++G  +       IH +  +  G+   NGW   Y    G
Sbjct: 244 GEENLGEYFNTISRYLKSNGVAL-------IHGITRQQGGA--YNGWINKYIFPGG 290


>gi|71909548|ref|YP_287135.1| ribosomal protein L11 methyltransferase [Dechloromonas aromatica
           RCB]
 gi|123626321|sp|Q478R6|PRMA_DECAR RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|71849169|gb|AAZ48665.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [Dechloromonas aromatica RCB]
          Length = 296

 Score = 43.4 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 47/131 (35%), Gaps = 14/131 (10%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L    L  +      +LD   GSG     A +L      G+++    +
Sbjct: 144 GTGSHPTTR---LCLEWLERNVSEACTVLDYGCGSGILAIAAARLGAGHVAGVDIDPQAV 200

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLI-QPGQILTNAQGNISATVC 317
           + A    A+ +  G   +T L      P      +V   ++  P ++L  A   I A V 
Sbjct: 201 EAAR---ANAERNG---VTALFADSATPVAGEYDVVVANILSNPLRVLAPA---ICAHVR 251

Query: 318 ADGTLISGTEL 328
             G L     L
Sbjct: 252 PGGKLALSGIL 262


>gi|168186822|ref|ZP_02621457.1| O-methyltransferase family protein [Clostridium botulinum C str.
           Eklund]
 gi|169295121|gb|EDS77254.1| O-methyltransferase family protein [Clostridium botulinum C str.
           Eklund]
          Length = 218

 Score = 43.4 bits (101), Expect = 0.056,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 5/48 (10%)

Query: 3   QKNSLAINENQNSI----FEWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
           +++   I+  +N+I    F+ K  I++G+ + +L  +  +  DLIF D
Sbjct: 87  ERDEKMIDIAKNNIKKYGFDNKINILQGDCLEILPSIEDE-FDLIFMD 133


>gi|300718657|ref|YP_003743460.1| ribosomal protein L11 methyltransferase [Erwinia billingiae Eb661]
 gi|299064493|emb|CAX61613.1| Ribosomal protein L11 methyltransferase [Erwinia billingiae Eb661]
          Length = 293

 Score = 43.4 bits (101), Expect = 0.056,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 7/108 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P       + +     G   HPT    ++    
Sbjct: 95  WEREWMVNFHPMRFGQRLWICPSWRDVPDPEAVNVMLDPGLAFGTGTHPTT---SMCLTW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           L      G  ++D   GSG     A KL   S IGI++    I  +  
Sbjct: 152 LDGLDLQGKTVIDFGCGSGILAIAALKLGAASAIGIDIDPQAIQASRD 199


>gi|269965737|ref|ZP_06179834.1| hypothetical protein VMC_12640 [Vibrio alginolyticus 40B]
 gi|269829605|gb|EEZ83842.1| hypothetical protein VMC_12640 [Vibrio alginolyticus 40B]
          Length = 342

 Score = 43.4 bits (101), Expect = 0.056,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 10/104 (9%)

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
               ++DP  G GT+         + +G+E+   ++      I      G  +  V   K
Sbjct: 133 EQLTLMDPMCGKGTTLFEGLIHGLNVVGVEINAKWVQEIQTFIVKFMKNGRFKHKVSKEK 192

Query: 283 RTE--PRVAFNLLVERGLIQP--------GQILTNAQGNISATV 316
           RT    +VA   +VE    +            L +A   I+  V
Sbjct: 193 RTAGGKKVADGFVVEAAANKEDYNQGNLQFMKLYSADTRIADQV 236


>gi|229160271|ref|ZP_04288270.1| O-antigen biosynthesis protein [Bacillus cereus R309803]
 gi|228623232|gb|EEK80059.1| O-antigen biosynthesis protein [Bacillus cereus R309803]
          Length = 232

 Score = 43.4 bits (101), Expect = 0.056,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 57/158 (36%), Gaps = 23/158 (14%)

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           ++   + H       LL  I     +    +LD    SG  GA  K+      GIE+  +
Sbjct: 12  HEGKSEHHYNAVNPNLLKHIKKDWGE----VLDIGCSSGALGAAIKENGTRVSGIEVFPE 67

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNA---QGNI 312
             + A +R+  V  LG+IE   L  +  +   V F  ++E         L +       +
Sbjct: 68  AAEKARERLDHVV-LGDIEKIDLPYEEEQFDCVIFGDVLEH--------LFDPWAVIEKV 118

Query: 313 SATVCADGTLISGTELGSIHRVGAKVSGSETCNG-WNF 349
              +  +G +++     SI  V      +    G W +
Sbjct: 119 KPYIKQNGVILA-----SIPNVSHISVLAPLLAGNWTY 151


>gi|259909383|ref|YP_002649739.1| DNA methylase N-4/N-6, fragment [Erwinia pyrifoliae Ep1/96]
 gi|224965005|emb|CAX56533.1| DNA methylase N-4/N-6, fragment [Erwinia pyrifoliae Ep1/96]
 gi|283479454|emb|CAY75370.1| Type III restriction-modification system StyLTI enzyme mod
          [Erwinia pyrifoliae DSM 12163]
          Length = 90

 Score = 43.4 bits (101), Expect = 0.056,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)

Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQ 52
          + II+G+++  L  L       V  IF DPPYN Q
Sbjct: 37 NMIIQGDNLLALRALMPLYAGRVKCIFIDPPYNTQ 71


>gi|197116729|ref|YP_002137156.1| hypothetical protein Gbem_0329 [Geobacter bemidjiensis Bem]
 gi|197086089|gb|ACH37360.1| conserved hypothetical protein [Geobacter bemidjiensis Bem]
          Length = 417

 Score = 43.4 bits (101), Expect = 0.056,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +P    + L   ++         ++DPF GSG   A  +  +   +GI+       +   
Sbjct: 24  YPAMVADELAVALVEKFIPTKSAVMDPFCGSGRLLAAVENAKLR-VGIDTNPLAWLLTKT 82

Query: 264 RIASVQP 270
           ++++V P
Sbjct: 83  KLSAVDP 89


>gi|91228695|ref|ZP_01262609.1| hypothetical protein V12G01_14069 [Vibrio alginolyticus 12G01]
 gi|91187766|gb|EAS74084.1| hypothetical protein V12G01_14069 [Vibrio alginolyticus 12G01]
          Length = 342

 Score = 43.4 bits (101), Expect = 0.056,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 10/104 (9%)

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
               ++DP  G GT+         + +G+E+   ++      I      G  +  V   K
Sbjct: 133 EQLTLMDPMCGKGTTLFEGLIHGLNVVGVEINAKWVQEIQTFIVKFMKNGRFKHKVSKEK 192

Query: 283 RTE--PRVAFNLLVERGLIQP--------GQILTNAQGNISATV 316
           RT    +VA   +VE    +            L +A   I+  V
Sbjct: 193 RTAGGKKVADGFVVEAAANKEDYNQGNLQFMKLYSADTRIADQV 236


>gi|254230233|ref|ZP_04923625.1| hypothetical protein VEx25_1727 [Vibrio sp. Ex25]
 gi|262393221|ref|YP_003285075.1| hypothetical protein VEA_002448 [Vibrio sp. Ex25]
 gi|151937265|gb|EDN56131.1| hypothetical protein VEx25_1727 [Vibrio sp. Ex25]
 gi|262336815|gb|ACY50610.1| hypothetical protein VEA_002448 [Vibrio sp. Ex25]
          Length = 342

 Score = 43.4 bits (101), Expect = 0.056,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 10/104 (9%)

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
               ++DP  G GT+         + +G+E+   ++      I      G  +  V   K
Sbjct: 133 EQLTLMDPMCGKGTTLFEGLIHGLNVVGVEINAKWVQEIQTFIVKFMKNGRFKHKVSKEK 192

Query: 283 RTE--PRVAFNLLVERGLIQP--------GQILTNAQGNISATV 316
           RT    +VA   +VE    +            L +A   I+  V
Sbjct: 193 RTAGGKKVADGFVVEAAANKEDYNQGNLQFMKLYSADTRIADQV 236


>gi|332286876|ref|YP_004418787.1| hypothetical protein PT7_3623 [Pusillimonas sp. T7-7]
 gi|330430829|gb|AEC22163.1| hypothetical protein PT7_3623 [Pusillimonas sp. T7-7]
          Length = 199

 Score = 43.4 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYN 50
           +I  G++   L+++   S DLI  DPP+ 
Sbjct: 102 RIHAGDAQEALKRMTENSFDLIMLDPPFG 130


>gi|330837037|ref|YP_004411678.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Spirochaeta coccoides DSM 17374]
 gi|329748940|gb|AEC02296.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Spirochaeta coccoides DSM 17374]
          Length = 287

 Score = 43.4 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 44/115 (38%), Gaps = 11/115 (9%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++ +G+       + ++S D++ ++PPY            H     + +        +  
Sbjct: 169 RLYQGDVTE---PVASESFDIVVSNPPYLTPHWY-----SHVEAQVLKEPRLALVGGDDG 220

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF---WILNDIVWRK 133
               R  ++  R VL P G L++   +     +  +++   F   WI ND+  R 
Sbjct: 221 LTIIRRLVVGARSVLAPEGALFLECDWRQCDEVARIMERCGFAQTWIYNDLAGRP 275


>gi|134294690|ref|YP_001118425.1| ribosomal protein L11 methyltransferase [Burkholderia vietnamiensis
           G4]
 gi|166223402|sp|A4JBD7|PRMA_BURVG RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|134137847|gb|ABO53590.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [Burkholderia vietnamiensis G4]
          Length = 300

 Score = 43.4 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYI 258
           G   HPT +   L    L  + KPG  +LD   GSG    +A+K      IGI++    +
Sbjct: 145 GTGSHPTTR---LCMEWLEQTVKPGQSVLDYGCGSGILAILARKCGADPVIGIDIDPQAV 201

Query: 259 DIATK 263
           + A +
Sbjct: 202 ESARQ 206


>gi|289423905|ref|ZP_06425698.1| ribosomal protein L11 methyltransferase [Peptostreptococcus
           anaerobius 653-L]
 gi|289155682|gb|EFD04354.1| ribosomal protein L11 methyltransferase [Peptostreptococcus
           anaerobius 653-L]
          Length = 314

 Score = 43.4 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 47/145 (32%), Gaps = 10/145 (6%)

Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--AL 212
                        Y       + + ++ +W        E +   +      T   E  ++
Sbjct: 107 QVKEEDWANNWKKYYKPTLIGDRIVIKPEWEDYEVKNQEIVVELNPGMAFGTGNHETTSM 166

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQP- 270
               L    K   ++ D   GSG  G  A KL  +  IGI++ +  + +A + I      
Sbjct: 167 CIENLEKYVKEDSVVFDIGCGSGILGICAAKLGAKEVIGIDIDEVAVKVAKENIDKNHVG 226

Query: 271 ------LGNIELTVLTGKRTEPRVA 289
                  GN+   +   K+ +  VA
Sbjct: 227 SNMTAIKGNLADDIDPSKKADVVVA 251


>gi|195396099|ref|XP_002056670.1| GJ11066 [Drosophila virilis]
 gi|194143379|gb|EDW59782.1| GJ11066 [Drosophila virilis]
          Length = 276

 Score = 43.4 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 9/83 (10%)

Query: 191 GSERLRNKDGEKLHPT-----QKPEALLSRILVSSTKPGD----IILDPFFGSGTSGAVA 241
             E   N D  K + T     +    +  R L     P D    +ILD   GSG SG+V 
Sbjct: 10  PPEIFYNDDEAKKYSTNTRIIEIQVEMAERALELLALPDDDEPRLILDIGCGSGLSGSVL 69

Query: 242 KKLRRSFIGIEMKQDYIDIATKR 264
           +     +IGI++ +  +DIA +R
Sbjct: 70  EDSEHIWIGIDISKSMLDIAVER 92


>gi|239827428|ref|YP_002950052.1| DNA methylase N-4/N-6 domain protein [Geobacillus sp. WCH70]
 gi|239807721|gb|ACS24786.1| DNA methylase N-4/N-6 domain protein [Geobacillus sp. WCH70]
          Length = 999

 Score = 43.4 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 8/76 (10%)

Query: 201 EKLHPTQKPEALLSRILVSST--KPGDIILDPFFGSGTSGAVAKKL------RRSFIGIE 252
             L    K    +S I+ +ST  + G +I+D F GSGT+G     L       R ++ IE
Sbjct: 715 NGLFSYPKSLYTVSDIVDASTYDEEGALIIDYFAGSGTTGHAVISLNREDNGNRKYVLIE 774

Query: 253 MKQDYIDIATKRIASV 268
           M + +  +   RI  V
Sbjct: 775 MGEYFDTVLKPRIQKV 790



 Score = 41.1 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 42/119 (35%), Gaps = 15/119 (12%)

Query: 42  LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
            I+ DPPYN   +  LY+ +                  ++ +     L   + +LK  G 
Sbjct: 466 CIYIDPPYNTGPSEILYKNNFK--------------HSSWLSLIENRLNISKNLLKDKGV 511

Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
           + +    + +  +  ++ N+      +I+    +P     G+     HE  +  +P   
Sbjct: 512 IIIAIDDYELVHLCQLVDNILPSYERNIIVVNHHPQG-SGGKNISRTHEYAVVLTPKGM 569


>gi|296242508|ref|YP_003649995.1| hypothetical protein Tagg_0770 [Thermosphaera aggregans DSM 11486]
 gi|296095092|gb|ADG91043.1| protein of unknown function DUF1156 [Thermosphaera aggregans DSM
           11486]
          Length = 1003

 Score = 43.4 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 12  NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY 49
           N  S    + +++  ++ S L KL  +  DLI  DPPY
Sbjct: 525 NAVSGSSSRVRVLLDDATS-LSKLGDEKFDLIVTDPPY 561


>gi|257055496|ref|YP_003133328.1| hypothetical protein Svir_14610 [Saccharomonospora viridis DSM
           43017]
 gi|256585368|gb|ACU96501.1| hypothetical protein Svir_14610 [Saccharomonospora viridis DSM
           43017]
          Length = 344

 Score = 43.4 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 17/101 (16%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
              +++   E L A+SVDLI  D PY +Q   +    D SL  +  D             
Sbjct: 230 YNTDTLRTDELLRAESVDLIVTDAPYGVQHGSRA--QDDSLARSPHD------------- 274

Query: 84  FTRAWLLACRRVLKPNGTLWVIGSYHNIFR--IGTMLQNLN 122
              A +    RVL+P G + +  + + + R  +  +L    
Sbjct: 275 LLAAAIPVWNRVLRPGGAIGISYNTYVLAREKLADLLDRAG 315


>gi|253577772|ref|ZP_04855044.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850090|gb|EES78048.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 189

 Score = 43.4 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 22  KIIKGNSISVLEKLPAKSV-DLIFADPPYNLQLNGQL--YRPDHSLVDAVT 69
           K++  + +  L  L  K V D+IF DPPYN +L  Q+  Y  D ++ D  T
Sbjct: 100 KLLNMDVLQALRSLEGKGVFDIIFMDPPYNNELERQVLEYLKDSTVADKNT 150


>gi|33591918|ref|NP_879562.1| putative DNA methylase [Bordetella pertussis Tohama I]
 gi|33571562|emb|CAE41047.1| putative DNA methylase [Bordetella pertussis Tohama I]
 gi|332381335|gb|AEE66182.1| putative DNA methylase [Bordetella pertussis CS]
          Length = 731

 Score = 43.4 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 43/125 (34%), Gaps = 43/125 (34%)

Query: 27  NSISVLEK-------------LPAKSVDLIFADPPY--NLQLN---GQLYRPDHSLVDAV 68
           +++++L +              P  S D I  DPPY  N+  +      Y     L+DA+
Sbjct: 467 DALALLRRPVQVQRASAAALPYPDDSFDAIVTDPPYYDNIFYSVLADFFYAWKKPLIDAI 526

Query: 69  -------------TDSWDKF------------SSFEAYDAFTRAWLLACRRVLKPNGTLW 103
                            D+             ++ + Y A     L    RVLKP+G L 
Sbjct: 527 ENRPTTPPHVPTANSGHDELVASRQRAGGSARAAHDEYCARLGQALREAARVLKPDGLLA 586

Query: 104 VIGSY 108
            + S+
Sbjct: 587 FVYSH 591


>gi|33599296|ref|NP_886856.1| putative DNA methylase [Bordetella bronchiseptica RB50]
 gi|33575342|emb|CAE30805.1| putative DNA methylase [Bordetella bronchiseptica RB50]
          Length = 731

 Score = 43.4 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 43/125 (34%), Gaps = 43/125 (34%)

Query: 27  NSISVLEK-------------LPAKSVDLIFADPPY--NLQLN---GQLYRPDHSLVDAV 68
           +++++L +              P  S D I  DPPY  N+  +      Y     L+DA+
Sbjct: 467 DALALLRRPVQVQRASAAALPYPDDSFDAIVTDPPYYDNIFYSVLADFFYAWKKPLIDAI 526

Query: 69  -------------TDSWDKF------------SSFEAYDAFTRAWLLACRRVLKPNGTLW 103
                            D+             ++ + Y A     L    RVLKP+G L 
Sbjct: 527 ENRPTTPPHAPTANSGHDELVASRQRAGGSARAAHDEYCARLGQALREAARVLKPDGLLA 586

Query: 104 VIGSY 108
            + S+
Sbjct: 587 FVYSH 591


>gi|153868679|ref|ZP_01998435.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152074725|gb|EDN71553.1| conserved hypothetical protein [Beggiatoa sp. PS]
          Length = 1061

 Score = 43.4 bits (101), Expect = 0.060,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 14/68 (20%)

Query: 209 PEALLSRILVS-STKPGDIILDPFFGSGTSGAVA-KKLRRSF------------IGIEMK 254
           P+ L  RI+ +        ILDP  GSG+    A  + +R F            IGI++ 
Sbjct: 350 PDWLCERIVANLPVTHQSKILDPACGSGSFLRAAVAQFKRDFPKLSAPQLTSQIIGIDIH 409

Query: 255 QDYIDIAT 262
              + IA 
Sbjct: 410 PLSVQIAK 417


>gi|330444964|ref|ZP_08308618.1| ribosomal protein L11 methyltransferase [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328493082|dbj|GAA03115.1| ribosomal protein L11 methyltransferase [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 294

 Score = 43.4 bits (101), Expect = 0.060,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 46/144 (31%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S    P       L +     G   HPT    +L    
Sbjct: 96  WEREWMDNFHPMRFGRRLWICPSWREAPEPDAVNVLLDPGLAFGTGTHPTT---SLCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  I+D   GSG     A KL     IGI++    I  +     + +  G  E
Sbjct: 153 LDGQDLTGKTIIDFGCGSGILAIAALKLGAAKVIGIDIDPQAILASRD---NAERNGVSE 209

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L   + +P      +V   ++
Sbjct: 210 NLELYLPKDQPEGIQADIVVANIL 233


>gi|240103681|ref|YP_002959990.1| Site-specific DNA-methyltransferase (adenine-specific), Type III
           restriction system mod subunit [Thermococcus
           gammatolerans EJ3]
 gi|239911235|gb|ACS34126.1| Site-specific DNA-methyltransferase (adenine-specific), Type III
           restriction system mod subunit [Thermococcus
           gammatolerans EJ3]
          Length = 920

 Score = 43.4 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 44/117 (37%), Gaps = 27/117 (23%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPY--NLQLN--------------GQLY--- 58
           E+  K+++ +S + L   P    D +F DPPY  N+  +              G LY   
Sbjct: 498 EFPSKVLQ-DSATSLP-FPDDYFDAVFTDPPYYDNVNYSVLSDFFYVWLKRTVGDLYPEL 555

Query: 59  ------RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
                      LV        K  S   ++   +  L    RVLKPNG L ++ ++ 
Sbjct: 556 FITPLTPKSKELVADPNRFGGKDGSKRYFEESMKQALREIHRVLKPNGILVLVYAHK 612



 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 44/130 (33%), Gaps = 1/130 (0%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
           IW +  P A     NY AL  A +D +        I   S+   + D E +   ++    
Sbjct: 36  IWWARRPLASSRATNYAALIPAPKDEEELERKKRFIAKLSKWESSLDEEIIRRAREDIME 95

Query: 213 LSRILVSSTK-PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
             R +          +LDPF G G+    A +L      ++     + I    +   Q  
Sbjct: 96  YFRGIRDDPNQERPRVLDPFAGGGSIPLEALRLGCETYAVDYNPVAVLILKAVLEYPQKY 155

Query: 272 GNIELTVLTG 281
           G  +   L  
Sbjct: 156 GKKKKGALDQ 165


>gi|161614745|ref|YP_001588710.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|238687234|sp|A9N6Y0|RLML_SALPB RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|161364109|gb|ABX67877.1| hypothetical protein SPAB_02497 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 702

 Score = 43.4 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 20/102 (19%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + +  L +   +  DLIF DPP         +     + ++     D       
Sbjct: 591 HRLIQADCLGWLRE-ANEQFDLIFIDPP--------TFSNSKRMEESFDVQRDHV----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                 A +   +R+L+  GT+    +          L  L 
Sbjct: 637 ------ALMKDLKRLLRKGGTIMFSNNKRGFRMDLEGLAELG 672


>gi|226356993|ref|YP_002786733.1| methylase [Deinococcus deserti VCD115]
 gi|226318983|gb|ACO46979.1| putative methylase [Deinococcus deserti VCD115]
          Length = 207

 Score = 43.4 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 25/32 (78%), Gaps = 2/32 (6%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
           ++++ +++S+L +L   S DL+F+DPPY++ +
Sbjct: 107 RVLRADAMSLLPRL--GSFDLVFSDPPYDVDI 136


>gi|207109928|ref|ZP_03244090.1| putative RNA methylase [Helicobacter pylori HPKX_438_CA4C1]
          Length = 143

 Score = 43.4 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 20/43 (46%)

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           TK  +++ D F G G +   +    R  IG ++   Y +I  K
Sbjct: 3   TKENELVFDYFAGVGGTLLGSSLCNRKAIGFDLSDRYKNIYMK 45



 Score = 39.2 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 7/36 (19%)

Query: 22 KIIKGNSISVLEK-------LPAKSVDLIFADPPYN 50
          K I G+S+ +L+           +   LI  DPPY 
Sbjct: 56 KFICGDSLELLKNNSLMQNLFKNELASLILIDPPYG 91


>gi|254180592|ref|ZP_04887190.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           1655]
 gi|184211131|gb|EDU08174.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           1655]
          Length = 300

 Score = 43.4 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 12/130 (9%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L    L  + +PG  +LD   GSG    +AKK       G+++    +
Sbjct: 145 GTGSHPTTR---LCMEWLEQTVQPGQTVLDYGCGSGILAILAKKCGAGRVTGVDIDPQAV 201

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + A  R  S +   ++  ++       P   F+++V   L  P +++ +    +++ V  
Sbjct: 202 EAA--RHNSERNRADVTYSLPDD---CPDGEFDIVVANILSNPLKLMASM---LASKVKP 253

Query: 319 DGTLISGTEL 328
            G +     L
Sbjct: 254 GGRIALSGVL 263


>gi|167825880|ref|ZP_02457351.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           9]
 gi|167895951|ref|ZP_02483353.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           7894]
 gi|167912596|ref|ZP_02499687.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           112]
 gi|167920549|ref|ZP_02507640.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           BCC215]
          Length = 300

 Score = 43.4 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 12/130 (9%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L    L  + +PG  +LD   GSG    +AKK       G+++    +
Sbjct: 145 GTGSHPTTR---LCMEWLEQTVQPGQTVLDYGCGSGILAILAKKCGAGRVTGVDIDPQAV 201

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + A  R  S +   ++  ++       P   F+++V   L  P +++ +    +++ V  
Sbjct: 202 EAA--RHNSERNRADVTYSLPDD---CPDGEFDIVVANILSNPLKLMASM---LASKVKP 253

Query: 319 DGTLISGTEL 328
            G +     L
Sbjct: 254 GGRIALSGVL 263


>gi|241661890|ref|YP_002980250.1| methyltransferase [Ralstonia pickettii 12D]
 gi|240863917|gb|ACS61578.1| methyltransferase [Ralstonia pickettii 12D]
          Length = 218

 Score = 43.4 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 31/81 (38%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I+ G++ + L + P  + D +F DPP+                                 
Sbjct: 119 IVSGDAFAWLARQPDAAFDAVFIDPPFA-------------------------------H 147

Query: 83  AFTRAWLLACRRVLKPNGTLW 103
            +T   L A  RV+KP G ++
Sbjct: 148 DWTLRALEAATRVVKPGGVIY 168


>gi|126453605|ref|YP_001067742.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           1106a]
 gi|226196830|ref|ZP_03792409.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           Pakistan 9]
 gi|242314839|ref|ZP_04813855.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           1106b]
 gi|126227247|gb|ABN90787.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           1106a]
 gi|225931090|gb|EEH27098.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           Pakistan 9]
 gi|242138078|gb|EES24480.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           1106b]
          Length = 302

 Score = 43.4 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 12/130 (9%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L    L  + +PG  +LD   GSG    +AKK       G+++    +
Sbjct: 147 GTGSHPTTR---LCMEWLEQTVQPGQTVLDYGCGSGILAILAKKCGAGRVTGVDIDPQAV 203

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + A  R  S +   ++  ++       P   F+++V   L  P +++ +    +++ V  
Sbjct: 204 EAA--RHNSERNRADVTYSLPDD---CPDGEFDIVVANILSNPLKLMASM---LASKVKP 255

Query: 319 DGTLISGTEL 328
            G +     L
Sbjct: 256 GGRIALSGVL 265


>gi|320540476|ref|ZP_08040126.1| putative 23S rRNA mG2445 methyltransferase, SAM-dependent [Serratia
           symbiotica str. Tucson]
 gi|320029407|gb|EFW11436.1| putative 23S rRNA mG2445 methyltransferase, SAM-dependent [Serratia
           symbiotica str. Tucson]
          Length = 718

 Score = 43.4 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 37/102 (36%), Gaps = 20/102 (19%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++I+ + +S +    ++  D+IF DPP         +     +  ++ 
Sbjct: 592 NLRANGLTGRQHRLIQADCLSWMNN-ASEQFDVIFIDPP--------TFSNSKRMESSLD 642

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
              D               +   +R+L+ NGT+    +    
Sbjct: 643 VQRDHL-----------ELMKNLQRLLRRNGTIIFSNNKRGF 673


>gi|300692636|ref|YP_003753631.1| hypothetical protein RPSI07_3018 [Ralstonia solanacearum PSI07]
 gi|299079696|emb|CBJ52373.1| conserved protein of unknown function, methylase putative
           [Ralstonia solanacearum PSI07]
          Length = 215

 Score = 43.4 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 18/27 (66%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY 49
           I++G++ + L +    + DL+F DPP+
Sbjct: 117 IVQGDAFAWLARQADGAFDLVFIDPPF 143


>gi|300722916|ref|YP_003712212.1| hypothetical protein XNC1_1970 [Xenorhabdus nematophila ATCC 19061]
 gi|297629429|emb|CBJ90030.1| conserved hypothetical protein [Xenorhabdus nematophila ATCC 19061]
          Length = 416

 Score = 43.4 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 204 HPTQKPEALLSRILVSSTKPGD-IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +        +  +L       D IILDP+ G+GT+   +       IGI++      IA 
Sbjct: 28  YYAGFSHTFVRDVLRKLNPAKDAIILDPWNGAGTTTLASALEGYEAIGIDLNPTMEIIAR 87

Query: 263 KRIASVQPLGNI 274
            ++++ + +   
Sbjct: 88  AKLSTKEDIKRA 99


>gi|225020176|ref|ZP_03709368.1| hypothetical protein CORMATOL_00177 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946920|gb|EEG28129.1| hypothetical protein CORMATOL_00177 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 490

 Score = 43.4 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 207 QKPEALLSRILVSSTKPGD---IILDPFFGSGTSGAVAKKLRRSFI--GIEMKQDYIDIA 261
           Q P AL  R L     P      +L+P  G G     A++   + I  GI++  DY+ +A
Sbjct: 10  QTPLALARRCLEVLALPQHGPIRVLEPTCGRGAFLRAAQERNPTSIRYGIDINADYVQVA 69

Query: 262 TK 263
             
Sbjct: 70  RN 71


>gi|163813862|ref|ZP_02205256.1| hypothetical protein COPEUT_00015 [Coprococcus eutactus ATCC 27759]
 gi|158450732|gb|EDP27727.1| hypothetical protein COPEUT_00015 [Coprococcus eutactus ATCC 27759]
          Length = 183

 Score = 43.4 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 56/170 (32%), Gaps = 30/170 (17%)

Query: 10  NENQNSIFEWKDKII--KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
           N N N   + K KI   +GN+ + L  +  +S+DLI   PPY              ++  
Sbjct: 25  NTNLNFTCQEKSKIFTKQGNANN-LSFIKDESIDLICTHPPY------------ADIIQY 71

Query: 68  VTDSWDKFSS--FEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNIFRIGTM------- 117
             ++    S   +E +            RVLK  G   ++IG       +  +       
Sbjct: 72  SKETPGDISHLKYEVFLKELEQVAKESYRVLKKQGICTFMIGDIRKKGYVLPLGMNSMQK 131

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQN-----AHETLIWASPSPKAK 162
             +  F +   I+  + N   +      +      AHE +     +    
Sbjct: 132 FVDTGFRLKEIIIKEQHNCRSSDYWEGRERKFLMLAHEYIFILEKANDHN 181


>gi|315506349|ref|YP_004085236.1| methyltransferase type 12 [Micromonospora sp. L5]
 gi|315412968|gb|ADU11085.1| Methyltransferase type 12 [Micromonospora sp. L5]
          Length = 201

 Score = 43.4 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 16/121 (13%)

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK-----RIASV 268
           +R+L +   PG  +LD   G+G   A       + +G++     ++ A       R    
Sbjct: 37  ARLLDALVPPGARVLDAGCGTGRVAAALAARGHNVVGVDADPTLVEAARADHPGPRFLVA 96

Query: 269 QPLGNIELTVLTGKRTEPRVAFNLLVERG----LIQPGQILTNAQGNISATVCADGTLIS 324
                 EL +      EP   F+  V  G     + PG    +    ++A V  DG ++ 
Sbjct: 97  ---DLAELDLAAQGEAEP---FDAAVLAGNVMVFVAPGTE-RDVLARVAAHVRPDGLVVV 149

Query: 325 G 325
           G
Sbjct: 150 G 150


>gi|167837954|ref|ZP_02464813.1| ribosomal protein L11 methyltransferase [Burkholderia thailandensis
           MSMB43]
          Length = 300

 Score = 43.4 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYI 258
           G   HPT +   L    L  + +PG  +LD   GSG    +AKK     + GI++    +
Sbjct: 145 GTGSHPTTR---LCMEWLEQTVQPGQTVLDYGCGSGILAILAKKCGAGSVTGIDIDPQAV 201

Query: 259 DIATK 263
           + A +
Sbjct: 202 EAARQ 206


>gi|167574653|ref|ZP_02367527.1| ribosomal protein L11 methyltransferase [Burkholderia oklahomensis
           C6786]
          Length = 300

 Score = 43.4 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYI 258
           G   HPT +   L    L  + +PG  +LD   GSG    +AKK     + GI++    +
Sbjct: 145 GTGSHPTTR---LCMEWLEQTVQPGQTVLDYGCGSGILAILAKKCGAGSVTGIDIDPQAV 201

Query: 259 DIATK 263
           + A +
Sbjct: 202 EAARQ 206


>gi|330815485|ref|YP_004359190.1| Ribosomal protein L11 methyltransferase [Burkholderia gladioli
           BSR3]
 gi|327367878|gb|AEA59234.1| Ribosomal protein L11 methyltransferase [Burkholderia gladioli
           BSR3]
          Length = 300

 Score = 43.4 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 12/130 (9%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L    L  + + G  +LD   GSG    +AKK      IGI++    +
Sbjct: 145 GTGSHPTTR---LCMEWLEQTVEAGQSVLDYGCGSGILAILAKKCGAGRVIGIDIDPQAV 201

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + A  R  S +    +   +       P   F+++V   L  P +++ +    +++ V  
Sbjct: 202 ESA--RHNSERNRAEVSYGLPDD---CPAGEFDIVVANILSNPLKLMASM---LASKVRP 253

Query: 319 DGTLISGTEL 328
            G +     L
Sbjct: 254 GGRIALSGVL 263


>gi|326622747|gb|EGE29092.1| Ribosomal RNA large subunit methyltransferase L [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
          Length = 702

 Score = 43.4 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 20/102 (19%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + +  L +   +  DLIF DPP         +     + ++     D       
Sbjct: 591 HRLIQADCLGWLRE-ANEQFDLIFIDPP--------TFSNSKRMEESFDVQRDHV----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                 A +   +R+L+  GT+    +          L  L 
Sbjct: 637 ------ALMKDLKRLLRKGGTIMFSNNKRGFRMDLEGLAELG 672


>gi|229818719|ref|YP_002880245.1| RNA methylase [Beutenbergia cavernae DSM 12333]
 gi|229564632|gb|ACQ78483.1| putative RNA methylase [Beutenbergia cavernae DSM 12333]
          Length = 348

 Score = 43.4 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 24/93 (25%)

Query: 31  VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD-AFTRAWL 89
           VL  +P  SVD++  DPP                       W +F S  A D  F  A L
Sbjct: 241 VLASVPDGSVDVVVTDPP-----------------------WGEFESGPAPDEEFFAATL 277

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
            + RRVL+P G L ++ S   +  +     +  
Sbjct: 278 TSMRRVLRPRGRLAMLLSRRLVRDVRAQWIDHG 310



 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATKRIASV 268
            D++LDPF GSG    VA ++RR F   I     Y D   +R+  +
Sbjct: 183 DDVVLDPFAGSG--ALVAARVRRPFRKAICSDVGYADGTVRRLPEL 226


>gi|200389518|ref|ZP_03216129.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199601963|gb|EDZ00509.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 702

 Score = 43.4 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 20/102 (19%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + +  L +   +  DLIF DPP         +     + ++     D       
Sbjct: 591 HRLIQADCLGWLRE-ANEQFDLIFIDPP--------TFSNSKRMEESFDVQRDHV----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                 A +   +R+L+  GT+    +          L  L 
Sbjct: 637 ------ALMKDLKRLLRKGGTIMFSNNKRGFRMDLEGLAELG 672


>gi|204929971|ref|ZP_03220992.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204320965|gb|EDZ06166.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 702

 Score = 43.4 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 20/102 (19%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + +  L +   +  DLIF DPP         +     + ++     D       
Sbjct: 591 HRLIQADCLGWLRE-ANEQFDLIFIDPP--------TFSNSKRMEESFDVQRDHV----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                 A +   +R+L+  GT+    +          L  L 
Sbjct: 637 ------ALMKDLKRLLRKGGTIMFSNNKRGFRMDLEGLAELG 672


>gi|62179584|ref|YP_216001.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|224584432|ref|YP_002638230.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|81309723|sp|Q57QU1|RLML_SALCH RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|62127217|gb|AAX64920.1| putative N6-adenine-specific DNA methylase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|224468959|gb|ACN46789.1| hypothetical protein SPC_2688 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322714052|gb|EFZ05623.1| Ribosomal RNA large subunit methyltransferase L [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
          Length = 702

 Score = 43.4 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 20/102 (19%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + +  L +   +  DLIF DPP         +     + ++     D       
Sbjct: 591 HRLIQADCLGWLRE-ANEQFDLIFIDPP--------TFSNSKRMEESFDVQRDHV----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                 A +   +R+L+  GT+    +          L  L 
Sbjct: 637 ------ALMKDLKRLLRKGGTIMFSNNKRGFRMDLEGLAELG 672


>gi|301299332|ref|ZP_07205617.1| methyltransferase domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300214647|gb|ADJ79063.1| Cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus
           salivarius CECT 5713]
 gi|300853072|gb|EFK80671.1| methyltransferase domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 391

 Score = 43.1 bits (100), Expect = 0.065,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 66/176 (37%), Gaps = 14/176 (7%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA-VAK 242
           WL    + S     K  + L   Q    +   +     KPG  +LD   G GT     A+
Sbjct: 126 WLDKTMTYSCAYFEKPDDSLEEAQMN-KVHHILKKLDPKPGSSLLDIGCGWGTLMLTAAR 184

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLI-QP 301
           +   + +GI + ++  +   +RI   + L +    +L   R    + F+ +   G+    
Sbjct: 185 EYNMNVVGITLSEEQYNAVKQRIKD-EGLEDQAEVLLEDYRELDHLPFDYITSVGMFEHV 243

Query: 302 GQILTNAQGN-ISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLG 356
           G+       N IS  + ++G  +       IH +  +  G+   NGW   Y    G
Sbjct: 244 GEENLGEYFNTISRYLKSNGVAL-------IHGITRQQGGA--YNGWINKYIFPGG 290


>gi|289192930|ref|YP_003458871.1| putative RNA methylase [Methanocaldococcus sp. FS406-22]
 gi|288939380|gb|ADC70135.1| putative RNA methylase [Methanocaldococcus sp. FS406-22]
          Length = 351

 Score = 43.1 bits (100), Expect = 0.065,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 5/107 (4%)

Query: 203 LHP-TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
            HP    P+   + + ++  K GDI+LDPF G+G     A  +    IG ++      +A
Sbjct: 184 FHPGCMLPKLARAMVNLARVKEGDIVLDPFCGTGGFLIEAGLIGAKLIGCDID---WRMA 240

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNA 308
           +  + +++   N+   V+  KR + +     L E  + +   I+T+ 
Sbjct: 241 SGTLINLEEY-NLLDKVIKVKRLDAKYVKKFLNELNIEKVDAIVTDP 286



 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 5/83 (6%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQ--LNGQLYRPDHSLVDAVTDS-WDKFSSFEAYDAFTR 86
             L +L  + VD I  DPPY +     G++ +    L D V D+ +  F+  +  +   +
Sbjct: 269 KFLNELNIEKVDAIVTDPPYGISTAKKGEIEKILEMLPDVVKDNGYFVFAYPKEIELDMK 328

Query: 87  AWLLACRRVLKPNGTLWVIGSYH 109
             L    +V    G +  I  Y 
Sbjct: 329 --LEGLYKVYIHKGLIRHIHVYK 349


>gi|253681632|ref|ZP_04862429.1| cyclopropane-fatty-acyl-phospholipid synthase [Clostridium
           botulinum D str. 1873]
 gi|253561344|gb|EES90796.1| cyclopropane-fatty-acyl-phospholipid synthase [Clostridium
           botulinum D str. 1873]
          Length = 391

 Score = 43.1 bits (100), Expect = 0.065,   Method: Composition-based stats.
 Identities = 58/303 (19%), Positives = 100/303 (33%), Gaps = 29/303 (9%)

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           + F +        V   +GT+   G   + F+I          I+ D          +  
Sbjct: 7   NKFLKNLFSETCEVQYWDGTVEKFGEGESKFKILINKHISEKEIIKDPFLTLGEAYMDNI 66

Query: 142 GRRFQNAHETL---------IWASPSPKAKGYTFNYDALKAANEDVQMRSD--------W 184
                N  E +              S  +K Y     ++K   +D+Q   D        W
Sbjct: 67  IDFQGNIQEIIEAIYKNKESFLHKASIFSKLYNVTKHSIKQNKKDIQYHYDLGNDFYSLW 126

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA-VAKK 243
           L    S S      + + L   Q+   +   +   +   GD +LD   G G      AK+
Sbjct: 127 LDKTMSYSCAYFKDNSDSLDDAQRH-KVSYILKKLNLNKGDKLLDIGCGWGELIIDAAKE 185

Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA--FNLLVERGLIQP 301
                 GI + ++ ++   +RI     L N+    L   R   +    FN +V  G+I+ 
Sbjct: 186 YGVKATGITLSEEQVEKVNERIKE-NNLENLVEVKLMDYRELIKEHKKFNRIVSVGMIE- 243

Query: 302 GQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSI 361
                  + NI   +     L+    +  +H + A++ G    N W   Y    G + SI
Sbjct: 244 ----HVGRKNIPEFIEDVSELLEDEGVSLLHCITAQIEGEA--NEWIKRYIFPGGYIPSI 297

Query: 362 NTL 364
             L
Sbjct: 298 REL 300


>gi|183598388|ref|ZP_02959881.1| hypothetical protein PROSTU_01781 [Providencia stuartii ATCC 25827]
 gi|188020565|gb|EDU58605.1| hypothetical protein PROSTU_01781 [Providencia stuartii ATCC 25827]
          Length = 702

 Score = 43.1 bits (100), Expect = 0.065,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 45/140 (32%), Gaps = 22/140 (15%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++I+ + ++ L     +  DLIF DPP            +   +D   
Sbjct: 579 NLQANGLTGRQHRLIQADCLNWLAN-SPEQFDLIFIDPP---------TFSNSKRMDGTF 628

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
           D                  +   +R+L+  GT+    +          L  L   +  + 
Sbjct: 629 DVQRDHVQL----------ITHLKRMLRRGGTIMFSNNKRGFKMDIEALNALG--LQAEE 676

Query: 130 VWRKSNPMPNFRGRRFQNAH 149
           +  K+      R R+  N  
Sbjct: 677 ITAKTRSEDFARNRQIHNCW 696


>gi|168237113|ref|ZP_02662171.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194737689|ref|YP_002114061.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|238693667|sp|B4TRX1|RLML_SALSV RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|194713191|gb|ACF92412.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197289800|gb|EDY29161.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 702

 Score = 43.1 bits (100), Expect = 0.065,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 20/102 (19%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + +  L +   +  DLIF DPP         +     + ++     D       
Sbjct: 591 HRLIQADCLGWLRE-ANEQFDLIFIDPP--------TFSNSKRMEESFDVQRDHV----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                 A +   +R+L+  GT+    +          L  L 
Sbjct: 637 ------ALMKDLKRLLRKGGTIMFSNNKRGFRMDLEGLAELG 672


>gi|16764420|ref|NP_460035.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|56413942|ref|YP_151017.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|167993433|ref|ZP_02574527.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168243849|ref|ZP_02668781.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168264749|ref|ZP_02686722.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168467500|ref|ZP_02701337.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168821988|ref|ZP_02833988.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194444574|ref|YP_002040264.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194451155|ref|YP_002045063.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197248600|ref|YP_002145931.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197264036|ref|ZP_03164110.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197362865|ref|YP_002142502.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|198242133|ref|YP_002214994.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|207856406|ref|YP_002243057.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|81821429|sp|Q5PGE3|RLML_SALPA RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|81853742|sp|Q8ZQ73|RLML_SALTY RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|238689924|sp|B5BBL9|RLML_SALPK RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|238690029|sp|B5F1U5|RLML_SALA4 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|238690358|sp|B5FQZ1|RLML_SALDC RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|238690430|sp|B5QZF1|RLML_SALEP RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|238690621|sp|B4TDY8|RLML_SALHS RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|238693591|sp|B4T1Z1|RLML_SALNS RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|16419576|gb|AAL19994.1| putative N6-adenine-specific DNA methylase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|56128199|gb|AAV77705.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|194403237|gb|ACF63459.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194409459|gb|ACF69678.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|195630073|gb|EDX48725.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197094342|emb|CAR59854.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197212303|gb|ACH49700.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197242291|gb|EDY24911.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197936649|gb|ACH73982.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205328551|gb|EDZ15315.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205337189|gb|EDZ23953.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205341529|gb|EDZ28293.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205346845|gb|EDZ33476.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206708209|emb|CAR32509.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|267992812|gb|ACY87697.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157605|emb|CBW17097.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312912052|dbj|BAJ36026.1| 23S rRNA methyltransferase L [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320085275|emb|CBY95059.1| UPF0020/UPF0064 protein ycbY [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321223678|gb|EFX48741.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323129329|gb|ADX16759.1| Ribosomal RNA large subunit methyltransferase L [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|332987955|gb|AEF06938.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 702

 Score = 43.1 bits (100), Expect = 0.065,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 20/102 (19%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + +  L +   +  DLIF DPP         +     + ++     D       
Sbjct: 591 HRLIQADCLGWLRE-ANEQFDLIFIDPP--------TFSNSKRMEESFDVQRDHV----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                 A +   +R+L+  GT+    +          L  L 
Sbjct: 637 ------ALMKDLKRLLRKGGTIMFSNNKRGFRMDLEGLAELG 672


>gi|207110506|ref|ZP_03244668.1| adenine specific DNA methyltransferase (mod) [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 99

 Score = 43.1 bits (100), Expect = 0.065,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 16/86 (18%)

Query: 36  PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRV 95
             +S+  I+ DPPYN + +   Y  DH+                 Y+ + +  L+  + V
Sbjct: 1   EKESIQTIYIDPPYNTKSSNFEYEDDHA----------------DYEKWIKEHLILAKAV 44

Query: 96  LKPNGTLWVIGSYHNIFRIGTMLQNL 121
           LK +G L++    + +  +  +   +
Sbjct: 45  LKQSGCLFISIDDNKMAEVKIIANEI 70


>gi|118576025|ref|YP_875768.1| DNA modification methylase [Cenarchaeum symbiosum A]
 gi|118194546|gb|ABK77464.1| DNA modification methylase [Cenarchaeum symbiosum A]
          Length = 444

 Score = 43.1 bits (100), Expect = 0.065,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 19/29 (65%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +LDPF G+GT+   A K+ +  +G+++  
Sbjct: 61  VLDPFSGAGTTILTACKMGKRSVGMDVMP 89



 Score = 42.3 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 28  SISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
           S+  L K+  +S+D +   PPY  + +    
Sbjct: 243 SLKALRKMKPRSIDAVVTSPPYANRYDYTRT 273


>gi|261246278|emb|CBG24086.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
          Length = 702

 Score = 43.1 bits (100), Expect = 0.066,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 20/102 (19%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + +  L +   +  DLIF DPP         +     + ++     D       
Sbjct: 591 HRLIQADCLGWLRE-ANEQFDLIFIDPP--------TFSNSKRMEESFDVQRDHV----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                 A +   +R+L+  GT+    +          L  L 
Sbjct: 637 ------ALMKDLKRLLRKGGTIMFSNNKRGFRMDLEGLAELG 672


>gi|205352216|ref|YP_002226017.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|238690475|sp|B5R6B4|RLML_SALG2 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|205271997|emb|CAR36841.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326627261|gb|EGE33604.1| Ribosomal RNA large subunit methyltransferase L [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 702

 Score = 43.1 bits (100), Expect = 0.066,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 20/102 (19%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + +  L +   +  DLIF DPP         +     + ++     D       
Sbjct: 591 HRLIQADCLGWLRE-ANEQFDLIFIDPP--------TFSNSKRMEESFDVQRDHV----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                 A +   +R+L+  GT+    +          L  L 
Sbjct: 637 ------ALMKDLKRLLRKGGTIMFSNNKRGFRMDLEGLAELG 672


>gi|118431275|ref|NP_147631.2| hypothetical protein APE_0964.1 [Aeropyrum pernix K1]
 gi|116062597|dbj|BAA79948.2| conserved hypothetical protein [Aeropyrum pernix K1]
          Length = 289

 Score = 43.1 bits (100), Expect = 0.066,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 19/120 (15%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
           A+N   + + + + +II G+++ V+      + D +  DPP       +  +   SL   
Sbjct: 176 ALNPWSHRLRDKRIRIILGDAVEVVRDFGDSAFDALIHDPP-------RFSKSTSSL--- 225

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
                    + E Y  F R  L    R+    G    I   +   R+  +L+   F +L 
Sbjct: 226 --------YTLELYREFHR-ILRRGGRLFHYTGEPGRIRGLNLPGRVARLLREAGFEVLG 276


>gi|170699982|ref|ZP_02891009.1| ribosomal protein L11 methyltransferase [Burkholderia ambifaria
           IOP40-10]
 gi|170135130|gb|EDT03431.1| ribosomal protein L11 methyltransferase [Burkholderia ambifaria
           IOP40-10]
          Length = 300

 Score = 43.1 bits (100), Expect = 0.066,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYI 258
           G   HPT +   L    L  S KPG  +LD   GSG    +A+K   +  +GI++    +
Sbjct: 145 GTGSHPTTR---LCMEWLERSVKPGQSVLDYGCGSGILAILARKCGANPVVGIDIDPQAV 201

Query: 259 DIATK 263
           + A +
Sbjct: 202 ESARQ 206


>gi|53803231|ref|YP_115088.1| hypothetical protein MCA2684 [Methylococcus capsulatus str. Bath]
 gi|53756992|gb|AAU91283.1| conserved domain protein [Methylococcus capsulatus str. Bath]
          Length = 1045

 Score = 43.1 bits (100), Expect = 0.066,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 47/162 (29%), Gaps = 27/162 (16%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYN-----------------LQLNGQLYR----- 59
            + +G+S   L ++ A S+DL+  DPP+                  L L G+        
Sbjct: 634 TVFQGSSTD-LARIEAGSLDLVITDPPFGGLLHYSELADFFYVWLRLVLKGKYPEYFSAD 692

Query: 60  -PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNIFRIGTM 117
               SL      + +       Y            R+LKP G L +      +   +  +
Sbjct: 693 YTPKSLEAVANKAREPEDPDGFYQRLLTQCWREAHRILKPGGILAFTFHHSEDEPWVAVL 752

Query: 118 --LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
             L +  F++      R                ++ +     
Sbjct: 753 ESLFDAGFYLEATYPIRSDETKGEGEFGSKTIEYDIIHVCRK 794



 Score = 36.5 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 20/51 (39%)

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
              +     + D F G GT+     +L    +G ++      +  + +A+V
Sbjct: 86  KKGSFKHLKVADIFMGGGTTLVEGSRLGMQMVGNDLNPVAWFVVKQELANV 136


>gi|21355093|ref|NP_649762.1| CG10903 [Drosophila melanogaster]
 gi|7298980|gb|AAF54183.1| CG10903 [Drosophila melanogaster]
 gi|17945482|gb|AAL48794.1| RE22146p [Drosophila melanogaster]
 gi|220948154|gb|ACL86620.1| CG10903-PA [synthetic construct]
 gi|220957392|gb|ACL91239.1| CG10903-PA [synthetic construct]
          Length = 276

 Score = 43.1 bits (100), Expect = 0.066,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 9/83 (10%)

Query: 191 GSERLRNKDGEKLHPT-----QKPEALLSRILVSSTKPGD----IILDPFFGSGTSGAVA 241
             E   N D  K + T     +    +  R L     P D    +ILD   GSG SG+V 
Sbjct: 10  PPEIFYNDDEAKKYSTNTRIIEIQVEMAERALELLALPDDDESRLILDIGCGSGLSGSVL 69

Query: 242 KKLRRSFIGIEMKQDYIDIATKR 264
           +     +IGI++ +  +DIA +R
Sbjct: 70  EDSEHMWIGIDISKSMLDIAVER 92


>gi|7474394|pir||S72474 site-specific DNA-methyltransferase (cytosine-specific) (EC
           2.1.1.73) BsoBI - Bacillus stearothermophilus
          Length = 542

 Score = 43.1 bits (100), Expect = 0.066,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 20/41 (48%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
           E   ++IK ++++ L K+   + D +   PPY  + +    
Sbjct: 292 ESVHELIKDSALNALPKINDNTFDAVITSPPYCNRYDYTRT 332



 Score = 42.7 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
            GD ILDPF GSGT+    + L    IGI++  
Sbjct: 100 KGDTILDPFLGSGTTSLTPRILGIDSIGIDILP 132


>gi|89075352|ref|ZP_01161774.1| ribosomal protein L11 methyltransferase [Photobacterium sp. SKA34]
 gi|89048901|gb|EAR54470.1| ribosomal protein L11 methyltransferase [Photobacterium sp. SKA34]
          Length = 294

 Score = 43.1 bits (100), Expect = 0.066,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 34/108 (31%), Gaps = 7/108 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S    P       L +     G   HPT    +L    
Sbjct: 96  WEREWMDNFHPMRFGRRLWICPSWREAPEPDAVNVLLDPGLAFGTGTHPTT---SLCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           L      G  ++D   GSG     A KL     IGI++    I  +  
Sbjct: 153 LDGQDLTGKTVIDFGCGSGILAIAALKLGAEKVIGIDIDPQAILASRD 200


>gi|322616436|gb|EFY13345.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619686|gb|EFY16561.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622618|gb|EFY19463.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629767|gb|EFY26542.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632511|gb|EFY29257.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636994|gb|EFY33697.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641467|gb|EFY38105.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646067|gb|EFY42583.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649631|gb|EFY46062.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654068|gb|EFY50391.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658600|gb|EFY54862.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663457|gb|EFY59659.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322670193|gb|EFY66333.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671429|gb|EFY67551.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322676785|gb|EFY72852.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682709|gb|EFY78728.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686389|gb|EFY82371.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323195118|gb|EFZ80300.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199800|gb|EFZ84889.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202793|gb|EFZ87829.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323209064|gb|EFZ94001.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323217976|gb|EGA02691.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323222008|gb|EGA06395.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226581|gb|EGA10786.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229777|gb|EGA13900.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233002|gb|EGA17098.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240737|gb|EGA24779.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243053|gb|EGA27074.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323249784|gb|EGA33686.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252744|gb|EGA36582.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323259157|gb|EGA42801.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323259980|gb|EGA43608.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323268019|gb|EGA51498.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269867|gb|EGA53316.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 702

 Score = 43.1 bits (100), Expect = 0.067,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 20/102 (19%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + +  L +   +  DLIF DPP         +     + ++     D       
Sbjct: 591 HRLIQADCLGWLRE-ANEQFDLIFIDPP--------TFSNSKRMEESFDVQRDHV----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                 A +   +R+L+  GT+    +          L  L 
Sbjct: 637 ------ALMKDLKRLLRKGGTIMFSNNKRGFRMDLEGLAELG 672


>gi|311064254|ref|YP_003970979.1| hypothetical protein BBPR_0864 [Bifidobacterium bifidum PRL2010]
 gi|310866573|gb|ADP35942.1| Conserved hypothetical protein with DUF262 domain [Bifidobacterium
           bifidum PRL2010]
          Length = 631

 Score = 43.1 bits (100), Expect = 0.067,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 16/98 (16%)

Query: 280 TGKRTEPRVAFNLLVERGLIQPGQILTNAQGNI--SATVCADGTLISGTELGSI------ 331
            G+R +  V F  L +RG++  G +L +    +  +ATV  D  +      G I      
Sbjct: 394 QGEREQNAVDFADLCKRGILTAGDMLESRYAGVIATATVTEDRRIRLSN--GEIFDSPSG 451

Query: 332 -HRVGAKVSGSE--TCNGWNFWYFEKLGELHSINTLRI 366
             R    +   E    NGW  W     G L   + LR 
Sbjct: 452 AFRRARMLETGEDKQVNGWTVWKVADGGTL---DELRQ 486


>gi|308229527|gb|ADO24178.1| M.AflIII [Anabaena flos-aquae CCAP 1403/13F]
          Length = 440

 Score = 43.1 bits (100), Expect = 0.067,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
             D ++DPF G GT+    +K     +GIE+  
Sbjct: 74  KDDFVVDPFSGRGTTVIECQKHGIKAMGIEINP 106



 Score = 39.2 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNG 55
           K  L     +  +F   + II GNS + L+  +  +S+D +   PPY  + + 
Sbjct: 238 KEDLIKLNQKQILFSNFNSIIVGNSTNNLQNTIINRSIDFVITSPPYPNRYSY 290


>gi|195344378|ref|XP_002038765.1| GM10995 [Drosophila sechellia]
 gi|195569115|ref|XP_002102557.1| GD19965 [Drosophila simulans]
 gi|194133786|gb|EDW55302.1| GM10995 [Drosophila sechellia]
 gi|194198484|gb|EDX12060.1| GD19965 [Drosophila simulans]
          Length = 276

 Score = 43.1 bits (100), Expect = 0.067,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 9/83 (10%)

Query: 191 GSERLRNKDGEKLHPT-----QKPEALLSRILVSSTKPGD----IILDPFFGSGTSGAVA 241
             E   N D  K + T     +    +  R L     P D    +ILD   GSG SG+V 
Sbjct: 10  PPEIFYNDDEAKKYSTNTRIIEIQVEMAERALELLALPDDDESRLILDIGCGSGLSGSVL 69

Query: 242 KKLRRSFIGIEMKQDYIDIATKR 264
           +     +IGI++ +  +DIA +R
Sbjct: 70  EDSEHMWIGIDISKSMLDIAVER 92


>gi|168233434|ref|ZP_02658492.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194469802|ref|ZP_03075786.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194456166|gb|EDX45005.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205332462|gb|EDZ19226.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 702

 Score = 43.1 bits (100), Expect = 0.067,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 20/102 (19%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + +  L +   +  DLIF DPP         +     + ++     D       
Sbjct: 591 HRLIQADCLGWLRE-ANEQFDLIFIDPP--------TFSNSKRMEESFDVQRDHV----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                 A +   +R+L+  GT+    +          L  L 
Sbjct: 637 ------ALMKDLKRLLRKGGTIMFSNNKRGFRMDLEGLAELG 672


>gi|32263452|gb|AAP78480.1| M.AhdI [Aeromonas hydrophila]
          Length = 532

 Score = 43.1 bits (100), Expect = 0.067,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 41/109 (37%), Gaps = 3/109 (2%)

Query: 209 PEALLSRILVSST-KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           P+ ++  I+   +    ++++DPF GSG     A    R+  G +  + + + A  R+  
Sbjct: 270 PKEVIDFIICMMSPNVRELVVDPFCGSGHFLTSALDYVRNSHG-KADKLFHEFAFTRLHG 328

Query: 268 VQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATV 316
           ++    +    +T  R       N+     L+ P     +        V
Sbjct: 329 IEKSDRMVRIAMTDMRLHGDGHSNIRCTDALL-PFDNYPDLYRETFDLV 376


>gi|307595922|ref|YP_003902239.1| putative RNA methylase [Vulcanisaeta distributa DSM 14429]
 gi|307551123|gb|ADN51188.1| putative RNA methylase [Vulcanisaeta distributa DSM 14429]
          Length = 256

 Score = 43.1 bits (100), Expect = 0.067,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 213 LSRILVSS--TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           ++R+LV+   T+ G++ LDPF GSG     A  +    IG+++   Y
Sbjct: 101 IARLLVNLARTEEGEVFLDPFVGSGIIAQEAMLIGARVIGMDINPKY 147


>gi|317056962|ref|YP_004105429.1| DNA methylase N-4/N-6 domain-containing protein [Ruminococcus albus
           7]
 gi|315449231|gb|ADU22795.1| DNA methylase N-4/N-6 domain protein [Ruminococcus albus 7]
          Length = 597

 Score = 43.1 bits (100), Expect = 0.067,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 25/39 (64%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           +PT+     ++  + S+TKPG+ ILD F GSG++G  A 
Sbjct: 30  YPTKISPEAIAIYIASATKPGEKILDAFSGSGSTGIAAL 68



 Score = 40.7 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 8/77 (10%)

Query: 37  AKSVDLIFADPPYN-------LQLNGQLYRPDHS-LVDAVTDSWDKFSSFEAYDAFTRAW 88
            KS+D +F DPP+        +    +L+ P  +   + V  S  +  + + Y       
Sbjct: 398 DKSIDFVFTDPPFGDYIPYAEVNQINELWLPKVTERSEEVIISNAQQKNEDNYRDMLTKV 457

Query: 89  LLACRRVLKPNGTLWVI 105
                RV   + ++ ++
Sbjct: 458 FREINRVATDDCSIAMV 474


>gi|270290049|ref|ZP_06196275.1| cyclopropane-fatty-acyl-phospholipid synthase [Pediococcus
           acidilactici 7_4]
 gi|270281586|gb|EFA27418.1| cyclopropane-fatty-acyl-phospholipid synthase [Pediococcus
           acidilactici 7_4]
          Length = 391

 Score = 43.1 bits (100), Expect = 0.067,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 57/167 (34%), Gaps = 14/167 (8%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL-DPFFGSGTSGA-VA 241
           WL P  + S      D + L   Q  +  +  I+          L D   G GT     A
Sbjct: 126 WLDPTMTYSCAYFESDQDSLETAQMNK--VRHIIRKLNPQPGKTLLDIGCGWGTLMLTAA 183

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLI-Q 300
           K+     +G+ + Q+  D+  +RI   + L  +    L   R      F+ +   G+   
Sbjct: 184 KEFNLKVVGVTLSQEQYDLVNQRIQE-EGLSGVAEVRLQDYRELGDEKFDYITSVGMFEH 242

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGW 347
            G+       +  A    D  +        IH +  +  G+   NGW
Sbjct: 243 VGKENLGIYFDNVAKYLKDDGVAL------IHGITRQQGGA--NNGW 281


>gi|213615947|ref|ZP_03371773.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 461

 Score = 43.1 bits (100), Expect = 0.067,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 20/102 (19%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + +  L +   +  DLIF DPP         +     + ++     D       
Sbjct: 350 HRLIQADCLGWLRE-ANEQFDLIFIDPP--------TFSNSKRMEESFDVQRDHV----- 395

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                 A +   +R+L+  GT+    +          L  L 
Sbjct: 396 ------ALMKDLKRLLRKGGTIMFSNNKRGFRMDLEGLAELG 431


>gi|170578890|ref|XP_001894584.1| hypothetical protein [Brugia malayi]
 gi|158598729|gb|EDP36566.1| conserved hypothetical protein [Brugia malayi]
          Length = 291

 Score = 43.1 bits (100), Expect = 0.067,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDII----LDPFFGSGTSGAVAKKLRRSFIGIEM 253
           K  +  H  +    +  R +     P + +    LD   GSG SG V  K+  ++IG+++
Sbjct: 21  KYSQNSHIIEIQTRMTERAIELLALPDNNVPKLLLDIGCGSGLSGEVVTKMGHNWIGVDI 80

Query: 254 KQDYIDIATK 263
            +  + +A  
Sbjct: 81  SEAMLKVAVD 90


>gi|74316198|ref|YP_313938.1| ribosomal protein L11 methyltransferase [Thiobacillus denitrificans
           ATCC 25259]
 gi|123612443|sp|Q3SMB4|PRMA_THIDA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|74055693|gb|AAZ96133.1| ribosomal protein L11 methyltransferase [Thiobacillus denitrificans
           ATCC 25259]
          Length = 296

 Score = 43.1 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  R L ++ + G+ +LD   GSG     A KL  R   G+++    +
Sbjct: 144 GTGSHPTTR---LCLRWLDANLRGGETLLDYGCGSGILAIAAAKLGARRVEGVDIDPQAV 200

Query: 259 DIATK 263
             +  
Sbjct: 201 SASRD 205


>gi|213646710|ref|ZP_03376763.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 702

 Score = 43.1 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 20/102 (19%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + +  L +   +  DLIF DPP         +     + ++     D       
Sbjct: 591 HRLIQADCLGWLRE-ANEQFDLIFIDPP--------TFSNSKRMEESFDVQRDHV----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                 A +   +R+L+  GT+    +          L  L 
Sbjct: 637 ------ALMKDLKRLLRKGGTIMFSNNKRGFRMDLEGLAELG 672


>gi|126656565|ref|ZP_01727826.1| hypothetical protein CY0110_22717 [Cyanothece sp. CCY0110]
 gi|126622251|gb|EAZ92958.1| hypothetical protein CY0110_22717 [Cyanothece sp. CCY0110]
          Length = 182

 Score = 43.1 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 2/47 (4%)

Query: 9   INENQNSI--FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
           INEN   I   E + K+IKG+ + VL+ L  K  DLI+ DPPY   L
Sbjct: 76  INENWQKIANDEQEFKVIKGDILKVLKTLNMKKFDLIYFDPPYQSGL 122


>gi|70726339|ref|YP_253253.1| ribosomal protein L11 methyltransferase [Staphylococcus
           haemolyticus JCSC1435]
 gi|82581519|sp|Q4L6S8|PRMA_STAHJ RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|68447063|dbj|BAE04647.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 312

 Score = 43.1 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 68/208 (32%), Gaps = 25/208 (12%)

Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKD--------------GEKLHPTQKPEALLS 214
              +  N     R+     I    E+   +D              G   HPT    ++  
Sbjct: 108 WENEWKNYFHPFRASEKFTIVPSWEQYTKEDDSEMCIELDPGMAFGTGDHPTT---SMCL 164

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATKRIASVQPLGN 273
           + + +     + ++D   GSG     +  L    I  +++ +  +++A +  A       
Sbjct: 165 KAIETYVDSDNSVIDVGTGSGILSIASHLLGVKRIKALDIDELAVNVAKENFAKNHCEDA 224

Query: 274 IELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHR 333
           IE       + E    F++++   ++    I+ +   +   T+  DG  I+   +   H+
Sbjct: 225 IEAVPGNLLKNETE-KFDIVI-ANIL--AHIIEDMIEDAYNTLNKDGYFITSGIIEEKHK 280

Query: 334 VGAKVSGSETCNGWNFWYFEKLGELHSI 361
              ++       G++            I
Sbjct: 281 ---QILNKMQNVGFDIKSVNHDNGWVCI 305


>gi|310659095|ref|YP_003936816.1| ribosomal protein l11 methyltransferase [Clostridium sticklandii
           DSM 519]
 gi|308825873|emb|CBH21911.1| Ribosomal protein L11 methyltransferase [Clostridium sticklandii]
          Length = 312

 Score = 43.1 bits (100), Expect = 0.069,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 56/166 (33%), Gaps = 7/166 (4%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSSTKPGD 225
           Y      ++ + ++  W       +E +   D      T   E   +  + L        
Sbjct: 118 YYKPVKVSDKIVIKPTWEEYNAKLNELVIELDPGMAFGTGTHETTNMCIQALERHIDSNC 177

Query: 226 IILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            +LD   GSG     A KL     +G+++    + ++ + I     LG +E  +  G   
Sbjct: 178 SVLDIGCGSGILSIAAAKLGADRVLGVDLDPVAVKVSKENIEQNNLLGFVE--IRHGNLM 235

Query: 285 EPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGS 330
           +       +V   +I    I+      ++  +  DG  IS   +  
Sbjct: 236 DVVTEKADIVVANII--ADIVIKLADEVANYMKEDGLFISSGIIMP 279


>gi|307595150|ref|YP_003901467.1| DNA methylase N-4/N-6 domain-containing protein [Vulcanisaeta
           distributa DSM 14429]
 gi|307550351|gb|ADN50416.1| DNA methylase N-4/N-6 domain protein [Vulcanisaeta distributa DSM
           14429]
          Length = 523

 Score = 43.1 bits (100), Expect = 0.069,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 226 IILDPFFGSGTSGAVAKKL--RRSFIGIEMKQDYIDIATKRIASV 268
           +++DPF GSG + +    L   R  I IE+ +   ++A + ++S+
Sbjct: 48  VVMDPFAGSGVTLSAVNDLIKPRKVIAIEINEGPCELARRVLSSL 92


>gi|16759942|ref|NP_455559.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29142286|ref|NP_805628.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213162294|ref|ZP_03348004.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213857603|ref|ZP_03384574.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289826800|ref|ZP_06545735.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|81853307|sp|Q8Z7S6|RLML_SALTI RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|25513135|pir||AH0625 conserved hypothetical protein STY1082 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16502236|emb|CAD08187.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137916|gb|AAO69477.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 702

 Score = 43.1 bits (100), Expect = 0.069,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 20/102 (19%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + +  L +   +  DLIF DPP         +     + ++     D       
Sbjct: 591 HRLIQADCLGWLRE-ANEQFDLIFIDPP--------TFSNSKRMEESFDVQRDHV----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                 A +   +R+L+  GT+    +          L  L 
Sbjct: 637 ------ALMKDLKRLLRKGGTIMFSNNKRGFRMDLEGLAELG 672


>gi|294615211|ref|ZP_06695092.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           E1636]
 gi|291591935|gb|EFF23563.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           E1636]
          Length = 388

 Score = 43.1 bits (100), Expect = 0.070,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 69/211 (32%), Gaps = 14/211 (6%)

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
            + L W     K        D     +        WL P  + S    N   + L   Q 
Sbjct: 94  KDYLKWLPKKEKHTKQKNKEDIHAHYDLGNDFYKLWLDPTLTYSCAYFNTPEDTLEQAQI 153

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
              +   +     K G+ +LD   G GT     AK+      GI + ++  D+ TKRI  
Sbjct: 154 N-KVHHILDKLFIKEGETLLDIGCGWGTLMFTAAKEYNVKATGITLSEEQYDLITKRIKE 212

Query: 268 VQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP--GQILTNAQGNISATVCADGTLISG 325
            + L +    +L   R      F+ +   G+ +    + L      +   +   GT +  
Sbjct: 213 -EHLEDKCRVLLMDYRELKGETFDHITSVGMFEHVGSENLEGYFKVVKDLLKPKGTAL-- 269

Query: 326 TELGSIHRVGAKVSGSETCNGWNFWYFEKLG 356
                IH +  +  G+   N W   Y    G
Sbjct: 270 -----IHGISRQQGGAT--NAWINKYIFPGG 293


>gi|213426921|ref|ZP_03359671.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
          Length = 443

 Score = 43.1 bits (100), Expect = 0.070,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 20/102 (19%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + +  L +   +  DLIF DPP         +     + ++     D       
Sbjct: 332 HRLIQADCLGWLRE-ANEQFDLIFIDPP--------TFSNSKRMEESFDVQRDHV----- 377

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                 A +   +R+L+  GT+    +          L  L 
Sbjct: 378 ------ALMKDLKRLLRKGGTIMFSNNKRGFRMDLEGLAELG 413


>gi|90961926|ref|YP_535842.1| cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus
           salivarius UCC118]
 gi|90821120|gb|ABD99759.1| Cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus
           salivarius UCC118]
          Length = 391

 Score = 43.1 bits (100), Expect = 0.070,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 66/176 (37%), Gaps = 14/176 (7%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA-VAK 242
           WL    + S     K  + L   Q    +   +     KPG  +LD   G GT     A+
Sbjct: 126 WLDKTMTYSCAYFEKPDDSLEEAQMN-KVHHILKKLDPKPGSSLLDIGCGWGTLMLTAAR 184

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLI-QP 301
           +   + +GI + ++  +   +RI   + L +    +L   R    + F+ +   G+    
Sbjct: 185 EYNMNVVGITLSEEQYNAVKQRIKD-EGLEDQAEVLLEDYRELDHLPFDYITSVGMFEHV 243

Query: 302 GQILTNAQGN-ISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLG 356
           G+       N IS  + ++G  +       IH +  +  G+   NGW   Y    G
Sbjct: 244 GEENLGEYFNTISRYLKSNGVAL-------IHGITRQQGGA--YNGWINKYIFPGG 290


>gi|295099932|emb|CBK89021.1| RNA methyltransferase, RsmD family [Eubacterium cylindroides T2-87]
          Length = 182

 Score = 43.1 bits (100), Expect = 0.070,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 6/53 (11%)

Query: 1   MSQKNSLAIN---ENQNSIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPPY 49
           M +K+ +A+N   EN  S+ E K+ +II G+  SV+ +L  ++ DL++ DPPY
Sbjct: 69  MVEKDRMALNVICENVKSLQE-KNCEIISGSIFSVMNRLK-EAYDLVYIDPPY 119


>gi|269960452|ref|ZP_06174825.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834879|gb|EEZ88965.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 342

 Score = 43.1 bits (100), Expect = 0.070,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE-- 285
           +DP  G GT+         + +G+E+ Q ++      I      G  +  V   KRT   
Sbjct: 138 MDPMCGKGTTLFEGLIHGLNVVGVEINQKWVQEIQTFIVKFMKNGRFKHKVSKEKRTSGG 197

Query: 286 PRVAFNLLVERGLIQPG--------QILTNAQGNISATV 316
            +VA   +VE    +            L +A   I+  V
Sbjct: 198 KKVADGFVVEAAADKDDYNKGNLQTMKLYSADTRIADQV 236


>gi|156975844|ref|YP_001446751.1| hypothetical protein VIBHAR_03589 [Vibrio harveyi ATCC BAA-1116]
 gi|156527438|gb|ABU72524.1| hypothetical protein VIBHAR_03589 [Vibrio harveyi ATCC BAA-1116]
          Length = 342

 Score = 43.1 bits (100), Expect = 0.070,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE-- 285
           +DP  G GT+         + +G+E+ Q ++      I      G  +  V   KRT   
Sbjct: 138 MDPMCGKGTTLFEGLIHGLNVVGVEINQKWVQEIQTFIVKFMKNGRFKHKVSKEKRTSGG 197

Query: 286 PRVAFNLLVERGLIQPG--------QILTNAQGNISATV 316
            +VA   +VE    +            L +A   I+  V
Sbjct: 198 KKVADGFVVEAAADKDDYNKGNLQTMKLYSADTRIADQV 236


>gi|153835265|ref|ZP_01987932.1| conserved hypothetical protein [Vibrio harveyi HY01]
 gi|148868240|gb|EDL67380.1| conserved hypothetical protein [Vibrio harveyi HY01]
          Length = 342

 Score = 43.1 bits (100), Expect = 0.070,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE-- 285
           +DP  G GT+         + +G+E+ Q ++      I      G  +  V   KRT   
Sbjct: 138 MDPMCGKGTTLFEGLIHGLNVVGVEINQKWVQEIQTFIVKFMKNGRFKHKVSKEKRTSGG 197

Query: 286 PRVAFNLLVERGLIQPG--------QILTNAQGNISATV 316
            +VA   +VE    +            L +A   I+  V
Sbjct: 198 KKVADGFVVEAAADKDDYNKGNLQTMKLYSADTRIADQV 236


>gi|46200182|ref|YP_005849.1| hypothetical protein TTC1880 [Thermus thermophilus HB27]
 gi|46197810|gb|AAS82222.1| hypothetical protein TT_C1880 [Thermus thermophilus HB27]
          Length = 410

 Score = 43.1 bits (100), Expect = 0.070,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 204 HPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
            P      LL  IL V    PG  +LDPF G+GT+   A +L  + +G+++  
Sbjct: 39  FPHSFSPQLLDEILSVYPLPPGGRLLDPFVGAGTAVLRALQLGHAAVGVDLSP 91


>gi|253682310|ref|ZP_04863107.1| O-methyltransferase family protein [Clostridium botulinum D str.
           1873]
 gi|253562022|gb|EES91474.1| O-methyltransferase family protein [Clostridium botulinum D str.
           1873]
          Length = 218

 Score = 43.1 bits (100), Expect = 0.071,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 5/48 (10%)

Query: 3   QKNSLAINENQNSI----FEWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
           +++   +N  +N+I    F+ K KI++G+ + +L  +  +  DLIF D
Sbjct: 87  ERDDDMVNIAKNNIVKYGFDDKIKILQGDCLEILPGI-DEQFDLIFMD 133


>gi|323701235|ref|ZP_08112910.1| DNA methylase N-4/N-6 domain protein [Desulfotomaculum nigrificans
           DSM 574]
 gi|323533837|gb|EGB23701.1| DNA methylase N-4/N-6 domain protein [Desulfotomaculum nigrificans
           DSM 574]
          Length = 939

 Score = 43.1 bits (100), Expect = 0.072,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           T+ P   + R ++  TKPGDII D F G+G +G  A    
Sbjct: 121 TKVPHKAIMRYILHYTKPGDIIYDGFSGTGMTGVAAGNCG 160



 Score = 41.5 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 10/75 (13%)

Query: 34  KLPAKSVDLIFADPPY---------NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
           +LP  S+D IF DPP+         NL     L    +S  +A+ +   +      Y   
Sbjct: 505 ELPPNSIDYIFTDPPFGANLMYSELNLIWEAWLGILTNSKPEAIINE-AQEKMLPDYQKL 563

Query: 85  TRAWLLACRRVLKPN 99
                    RVLKP 
Sbjct: 564 IEECFREYFRVLKPG 578


>gi|88811247|ref|ZP_01126503.1| hypothetical protein NB231_10603 [Nitrococcus mobilis Nb-231]
 gi|88791786|gb|EAR22897.1| hypothetical protein NB231_10603 [Nitrococcus mobilis Nb-231]
          Length = 921

 Score = 43.1 bits (100), Expect = 0.072,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 3/87 (3%)

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
            P+P    +   Y       E    R    I +  G      K       T+ P   +  
Sbjct: 71  CPNPWLADFVQQYGKPYDPAE-SYRREPLAIDVSVGKTDPIYKAHSYH--TKVPHLAIVP 127

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAK 242
            ++  TKPGDI+LD F GSG +G  A+
Sbjct: 128 SILHYTKPGDIVLDGFAGSGMTGVAAQ 154



 Score = 42.3 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 36/100 (36%), Gaps = 11/100 (11%)

Query: 35  LPAKSVDLIFADPPYNLQ-LNGQLYRPDHSLVDAVTDSW-----DKF--SSFEAYDAFTR 86
           LP  S+D +F DPP+        L     S     TD+      D+F   +   Y    +
Sbjct: 489 LPDASIDYVFTDPPFGENIYYADLNFLVESWHGVTTDAQPEAIIDRFKKKALPEYQHLMQ 548

Query: 87  AWLLACRRVLKPN--GTLWVIGSYHNIFR-IGTMLQNLNF 123
                  RVLKP    T+    S   ++  I   LQ   F
Sbjct: 549 RCFAEYHRVLKPGRWMTVVFSNSKAAVWNAIQVALQQAGF 588


>gi|282164277|ref|YP_003356662.1| putative DNA methylase [Methanocella paludicola SANAE]
 gi|282156591|dbj|BAI61679.1| putative DNA methylase [Methanocella paludicola SANAE]
          Length = 204

 Score = 43.1 bits (100), Expect = 0.073,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
            G GT+   AK L R  IGI++    I++   
Sbjct: 2   AGGGTTLVEAKLLNRRGIGIDINPKSIELIKN 33



 Score = 38.4 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 54/167 (32%), Gaps = 26/167 (15%)

Query: 7   LAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
             +N    S +E   KI  G+  + L  +   S+DLI   PPY   +     + +  L +
Sbjct: 33  NILNFESESKYEPDVKI--GDIRN-LGDINENSIDLIVTHPPYLNIIKYSEGKIEGDLSN 89

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHN-------IFRIGTML 118
                    SS + +       +    RVLK +     +IG            + +    
Sbjct: 90  --------ISSLKKFCDELELGIKEFYRVLKEDSYCAILIGDTRRAKHYIPLSYYVMQKF 141

Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQN-------AHETLIWASPS 158
            + NF +  DI+  + N       +           AHE L      
Sbjct: 142 LDNNFVLKEDIIKAQHNCESTPYWKGQAKKLNIYLIAHEHLYVFRKP 188


>gi|256811021|ref|YP_003128390.1| putative RNA methylase [Methanocaldococcus fervens AG86]
 gi|256794221|gb|ACV24890.1| putative RNA methylase [Methanocaldococcus fervens AG86]
          Length = 351

 Score = 43.1 bits (100), Expect = 0.073,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 43/91 (47%), Gaps = 4/91 (4%)

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
           ++  K GD++LDPF G+G     A  +    IG ++      +A+  + +++   N+   
Sbjct: 200 LARVKEGDVVLDPFCGTGGFLIEAGLIGAKLIGCDID---WRMASGTLINLEEY-NLLDN 255

Query: 278 VLTGKRTEPRVAFNLLVERGLIQPGQILTNA 308
           V+  K+ + +     L E  + +   ++T+ 
Sbjct: 256 VIKVKKLDAKYVKEFLNELNIEKVDAVVTDP 286



 Score = 36.9 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQLNGQ 56
             L +L  + VD +  DPPY +    +
Sbjct: 269 EFLNELNIEKVDAVVTDPPYGISTAKK 295


>gi|71282574|ref|YP_267298.1| ribosomal protein L11 methyltransferase [Colwellia psychrerythraea
           34H]
 gi|123633940|sp|Q489G6|PRMA_COLP3 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|71148314|gb|AAZ28787.1| ribosomal protein L11 methyltransferase [Colwellia psychrerythraea
           34H]
          Length = 293

 Score = 43.1 bits (100), Expect = 0.073,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 48/139 (34%), Gaps = 10/139 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  +K         S   +P       + +     G   HPT    AL    
Sbjct: 96  WEREWMDNFHPMKFGERLWVCPSWRDVPDPEAVNVMLDPGLAFGTGTHPTT---ALCLTW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L         ++D   GSG     A KL  +  IGI++    +  +   +A+ +     +
Sbjct: 153 LDGLDLQDKTVVDFGCGSGILSLAALKLGAKKVIGIDIDPQALQAS---LANAERNNVSD 209

Query: 276 LTVLTGKRTEPRVAFNLLV 294
              L   + +P    +++V
Sbjct: 210 RLELYLPKDQPEFKADVVV 228


>gi|226939530|ref|YP_002794603.1| ribosomal protein L11 methyltransferase [Laribacter hongkongensis
           HLHK9]
 gi|254783308|sp|C1DCV9|PRMA_LARHH RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|226714456|gb|ACO73594.1| PrmA [Laribacter hongkongensis HLHK9]
          Length = 297

 Score = 43.1 bits (100), Expect = 0.073,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 11/130 (8%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  + L ++   G+ +LD   GSG     A KL      GI++    +
Sbjct: 143 GTGSHPTTR---LCLQWLDANICGGESVLDYGCGSGILAIAAIKLGATDVTGIDIDPQAV 199

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
             +     +VQ        +        +  F++LV   L  P ++L +    +++ V A
Sbjct: 200 QASRD--NAVQNQVTAAFGLPDTLEDGRQ--FDVLVANILANPLRMLGDL---LASHVRA 252

Query: 319 DGTLISGTEL 328
            G ++    L
Sbjct: 253 GGRIVLSGIL 262


>gi|145530654|ref|XP_001451099.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124418743|emb|CAK83702.1| unnamed protein product [Paramecium tetraurelia]
          Length = 414

 Score = 43.1 bits (100), Expect = 0.073,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 15/37 (40%)

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            +  K  D + DPF G+G+S            G E+ 
Sbjct: 222 QAQVKENDFVFDPFAGTGSSLVACSHFGAICFGSEID 258



 Score = 36.5 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 13/68 (19%)

Query: 37  AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
            +  D I  DPPY ++ + Q    +  L    T  + +                  RRVL
Sbjct: 318 DEFFDAIICDPPYGIRASIQQDGNEQDLQANRTAIYKRM-------------FEVARRVL 364

Query: 97  KPNGTLWV 104
           +  G L  
Sbjct: 365 RKGGRLVY 372


>gi|194899416|ref|XP_001979256.1| GG14363 [Drosophila erecta]
 gi|190650959|gb|EDV48214.1| GG14363 [Drosophila erecta]
          Length = 276

 Score = 43.1 bits (100), Expect = 0.074,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 9/83 (10%)

Query: 191 GSERLRNKDGEKLHPT-----QKPEALLSRILVSSTKPGD----IILDPFFGSGTSGAVA 241
             E   N D  K + T     +    +  R L     P D    +ILD   GSG SG+V 
Sbjct: 10  PPEIFYNDDEAKKYSTNTRIIEIQVEMAERALELLALPDDDECRLILDIGCGSGLSGSVL 69

Query: 242 KKLRRSFIGIEMKQDYIDIATKR 264
           +     +IGI++ +  +DIA +R
Sbjct: 70  EDSEHMWIGIDISKSMLDIAVER 92


>gi|94499138|ref|ZP_01305676.1| hypothetical protein RED65_10129 [Oceanobacter sp. RED65]
 gi|94428770|gb|EAT13742.1| hypothetical protein RED65_10129 [Oceanobacter sp. RED65]
          Length = 738

 Score = 43.1 bits (100), Expect = 0.074,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKS--VDLIFADPP 48
           N I E     I+ + +  L+ + ++S   DLIF DPP
Sbjct: 619 NGIAEKYHHFIQADCMQWLKDVQSESKRFDLIFMDPP 655


>gi|195498585|ref|XP_002096586.1| GE24963 [Drosophila yakuba]
 gi|194182687|gb|EDW96298.1| GE24963 [Drosophila yakuba]
          Length = 276

 Score = 43.1 bits (100), Expect = 0.074,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 9/83 (10%)

Query: 191 GSERLRNKDGEKLHPT-----QKPEALLSRILVSSTKPGD----IILDPFFGSGTSGAVA 241
             E   N D  K + T     +    +  R L     P D    +ILD   GSG SG+V 
Sbjct: 10  PPEIFYNDDEAKKYSTNTRIIEIQVEMAERALELLALPDDDECRLILDIGCGSGLSGSVL 69

Query: 242 KKLRRSFIGIEMKQDYIDIATKR 264
           +     +IGI++ +  +DIA +R
Sbjct: 70  EDSEHMWIGIDISKSMLDIAVER 92


>gi|194743420|ref|XP_001954198.1| GF18155 [Drosophila ananassae]
 gi|190627235|gb|EDV42759.1| GF18155 [Drosophila ananassae]
          Length = 276

 Score = 43.1 bits (100), Expect = 0.074,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 9/83 (10%)

Query: 191 GSERLRNKDGEKLHPT-----QKPEALLSRILVSSTKPGD----IILDPFFGSGTSGAVA 241
             E   N D  K + T     +    +  R L     P D    +ILD   GSG SG+V 
Sbjct: 10  PPEIFYNDDEAKKYSTNTRIIEIQVEMAERALELLALPDDDESRLILDIGCGSGLSGSVL 69

Query: 242 KKLRRSFIGIEMKQDYIDIATKR 264
           +     +IGI++ +  +DIA +R
Sbjct: 70  EDSDHMWIGIDISKSMLDIAVER 92


>gi|183221205|ref|YP_001839201.1| hypothetical protein LEPBI_I1819 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911296|ref|YP_001962851.1| SAM-dependent methyltransferase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775972|gb|ABZ94273.1| SAM-dependent methyltransferase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167779627|gb|ABZ97925.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 393

 Score = 43.1 bits (100), Expect = 0.074,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
           + +KN L +N     +   K K +  +    L+K+ +   D I  DPP
Sbjct: 250 LCEKN-LELNGFSQELLAVKHKSLVMDCFDYLKKMDSGIYDCIILDPP 296


>gi|304385698|ref|ZP_07368042.1| cyclopropane-fatty-acyl-phospholipid synthase [Pediococcus
           acidilactici DSM 20284]
 gi|304328202|gb|EFL95424.1| cyclopropane-fatty-acyl-phospholipid synthase [Pediococcus
           acidilactici DSM 20284]
          Length = 391

 Score = 43.1 bits (100), Expect = 0.075,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 56/167 (33%), Gaps = 14/167 (8%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL-DPFFGSGTSGA-VA 241
           WL P  + S      D + L   Q  +  +  I+          L D   G GT     A
Sbjct: 126 WLDPTMTYSCAYFESDQDSLETAQMNK--VRHIIQKLNPQPGKTLLDIGCGWGTLMLTAA 183

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLI-Q 300
           K+     +G+ + Q+  D+  +RI   + L  +    L   R      F+ +   G+   
Sbjct: 184 KEFNLKVVGVTLSQEQYDLVNQRIQE-EGLSGVAEVRLQDYRELGDEKFDYITSVGMFEH 242

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGW 347
            G+       +  A    D  +        IH +  +  G    NGW
Sbjct: 243 VGKENLGIYFDNVAKYLKDDGVAL------IHGITRQQGG--ANNGW 281


>gi|325179891|emb|CCA14293.1| methyltransferase WBSCR22 putative [Albugo laibachii Nc14]
          Length = 277

 Score = 43.1 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 210 EALLSRILVSSTKPGD---IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           E L  R +     P +   +ILD   GSG SG   ++   ++IG+++ +  + IA +R
Sbjct: 33  EQLAQRAIELLNLPAEKECLILDVGCGSGLSGVALEEAGHAWIGMDISKSMLAIAAER 90


>gi|304311577|ref|YP_003811175.1| hypothetical protein HDN1F_19470 [gamma proteobacterium HdN1]
 gi|301797310|emb|CBL45530.1| Conserved hypothetical protein [gamma proteobacterium HdN1]
          Length = 230

 Score = 43.1 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 33/52 (63%), Gaps = 3/52 (5%)

Query: 1   MSQKNSLAINENQNSIFEWKD---KIIKGNSISVLEKLPAKSVDLIFADPPY 49
           + +KN  AI   +  + E +D   KI++G+++ +L + P++  D++F DPP+
Sbjct: 104 LIEKNPRAITTIKAFLHEVEDTHAKILEGDALRILARPPSEPFDVVFLDPPF 155


>gi|298293869|ref|YP_003695808.1| methyltransferase [Starkeya novella DSM 506]
 gi|296930380|gb|ADH91189.1| methyltransferase [Starkeya novella DSM 506]
          Length = 185

 Score = 43.1 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 6/51 (11%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           +I + ++  + E L + S DL+F DPPY   L       + +LV A    W
Sbjct: 98  RIFRRDATKLGEALASDSFDLVFCDPPYGRGL------AEKALVSARDGKW 142


>gi|109900242|ref|YP_663497.1| putative methyltransferase [Pseudoalteromonas atlantica T6c]
 gi|109702523|gb|ABG42443.1| 16S rRNA m(2)G-966 methyltransferase [Pseudoalteromonas atlantica
           T6c]
          Length = 194

 Score = 43.1 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 33/52 (63%), Gaps = 3/52 (5%)

Query: 1   MSQKNSLAINENQNSIFEWKD--KIIKGNSISVLEKLPAKSVDLIFADPPYN 50
           + +K + ++ +N +++   ++  +++ G+S+  L +L  K  DLIF DPP+N
Sbjct: 86  LDKKVARSLQQNLDTLKASRESAQVLCGDSLGYLSQLNDK-FDLIFLDPPFN 136


>gi|150009100|ref|YP_001303843.1| putative methyltransferase [Parabacteroides distasonis ATCC 8503]
 gi|255015721|ref|ZP_05287847.1| putative methyltransferase [Bacteroides sp. 2_1_7]
 gi|149937524|gb|ABR44221.1| putative methyltransferase [Parabacteroides distasonis ATCC 8503]
          Length = 185

 Score = 43.1 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNL 51
           +I+G+    L   P +S D IFADPPY L
Sbjct: 96  LIRGDVFRYLNSAPKQSFDFIFADPPYAL 124


>gi|46198605|ref|YP_004272.1| ribosomal protein L11 methyltransferase [Thermus thermophilus HB27]
 gi|46196228|gb|AAS80645.1| ribosomal protein L11 methyltransferase [Thermus thermophilus HB27]
          Length = 254

 Score = 43.1 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           G   H T +   L  + L    +PGD +LD   GSG     A+KL    +G+++  
Sbjct: 100 GTGHHETTR---LALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDP 152


>gi|55980625|ref|YP_143922.1| ribosomal protein L11 methyltransferase [Thermus thermophilus HB8]
 gi|62297879|sp|Q84BQ9|PRMA_THET8 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|39654915|pdb|1UFK|A Chain A, Crystal Structure Of Tt0836
 gi|122921161|pdb|2NXE|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
           (Prma) In Complex With S-Adenosyl-L-Methionine
 gi|122921162|pdb|2NXE|B Chain B, T. Thermophilus Ribosomal Protein L11 Methyltransferase
           (Prma) In Complex With S-Adenosyl-L-Methionine
 gi|122921165|pdb|2NXJ|A Chain A, T.Thermophilus Ribosomal Protein L11 Methyltransferase
           (Prma) In Space Group P 21 21 2
 gi|122921166|pdb|2NXJ|B Chain B, T.Thermophilus Ribosomal Protein L11 Methyltransferase
           (Prma) In Space Group P 21 21 2
 gi|122921168|pdb|2NXN|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
           (Prma) In Complex With Ribosomal Protein L11
 gi|134104999|pdb|2NXC|A Chain A, Apo-Form Of T. Thermophilus Ribosomal Protein L11
           Methyltransferase (Prma)
 gi|188596410|pdb|3CJQ|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
           With Dimethylated Ribosomal Protein L11 In Space Group
           P212121
 gi|188596412|pdb|3CJQ|D Chain D, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
           With Dimethylated Ribosomal Protein L11 In Space Group
           P212121
 gi|188596414|pdb|3CJQ|G Chain G, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
           With Dimethylated Ribosomal Protein L11 In Space Group
           P212121
 gi|188596416|pdb|3CJR|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
           With Ribosomal Protein L11 (K39a) And Inhibitor
           Sinefungin.
 gi|188596437|pdb|3CJU|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
           With Trimethylated Ribosomal Protein L11
 gi|206582140|pdb|3EGV|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
           With Trimethylated Ribosomal Protein L11
 gi|212374912|pdb|2ZBP|A Chain A, Crystal Structure Of Ribosomal Protein L11
           Methyltransferase From Thermus Thermophilus In Complex
           With S-Adenosyl-L-Methionine
 gi|212374913|pdb|2ZBQ|A Chain A, Crystal Structure Of Ribosomal Protein L11
           Methyltransferase From Thermus Thermophilus In Complex
           With S-Adenosyl-L-Homocysteine
 gi|212374914|pdb|2ZBR|A Chain A, Crystal Structure Of Ribosomal Protein L11
           Methyltransferase From Thermus Thermophilus In Complex
           With S-Adenosyl-Ornithine
 gi|55772038|dbj|BAD70479.1| ribosomal protein L11 methyltransferase [Thermus thermophilus HB8]
          Length = 254

 Score = 43.1 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           G   H T +   L  + L    +PGD +LD   GSG     A+KL    +G+++  
Sbjct: 100 GTGHHETTR---LALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDP 152


>gi|29467707|dbj|BAC67244.1| ribosomal protein L11 methyltransferase [Thermus thermophilus]
          Length = 254

 Score = 43.1 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           G   H T +   L  + L    +PGD +LD   GSG     A+KL    +G+++  
Sbjct: 100 GTGHHETTR---LALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDP 152


>gi|326424050|ref|NP_761456.2| 23S rRNA (guanine-N-2-) -methyltransferase rlmL [Vibrio vulnificus
           CMCP6]
 gi|319999428|gb|AAO10983.2| 23S rRNA (guanine-N-2-) -methyltransferase rlmL [Vibrio vulnificus
           CMCP6]
          Length = 707

 Score = 43.1 bits (100), Expect = 0.077,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 22/130 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + K  + + +  LEK   +  DLIF DPP         +     + D+     D      
Sbjct: 594 QHKFEQADCLQWLEKAQGQY-DLIFIDPP--------TFSNSKRMEDSFDVQRDHIK--- 641

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                    +   +R+L+ NGT+    +  +       ++ L     N  +  ++ P+  
Sbjct: 642 --------LMKNLKRLLRENGTIVFSNNKRHFKMDMEEMEELGLDAKN--ISSQTLPLDF 691

Query: 140 FRGRRFQNAH 149
            R +   N  
Sbjct: 692 SRNKHIHNCW 701


>gi|157960220|ref|YP_001500254.1| ribosomal protein L11 methyltransferase [Shewanella pealeana ATCC
           700345]
 gi|189037704|sp|A8GZI2|PRMA_SHEPA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|157845220|gb|ABV85719.1| ribosomal protein L11 methyltransferase [Shewanella pealeana ATCC
           700345]
          Length = 293

 Score = 43.1 bits (100), Expect = 0.077,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  +K  +      S   IP  +    + +     G   HPT    AL    
Sbjct: 95  WEREWMDNFHPIKFGDRLWICPSWREIPDPTAVNVILDPGLAFGTGTHPTT---ALCLEW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L         ++D   GSG     A KL      GI++    I+ +    A+ +  G  +
Sbjct: 152 LDGLDYSNKDVIDFGCGSGILAVAALKLGAERVTGIDIDYQAIEASK---ANAERNGVED 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L     +P      ++   ++
Sbjct: 209 KLALYLPEDQPADLLADILVANIL 232


>gi|145501733|ref|XP_001436847.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124403991|emb|CAK69450.1| unnamed protein product [Paramecium tetraurelia]
          Length = 414

 Score = 43.1 bits (100), Expect = 0.078,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 15/37 (40%)

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            +  +  D + DPF G+G+S            G E+ 
Sbjct: 222 QAIVQENDFVFDPFAGTGSSLVACSHFGAICFGSEID 258


>gi|256841660|ref|ZP_05547166.1| RsmD family RNA methyltransferase [Parabacteroides sp. D13]
 gi|262384000|ref|ZP_06077136.1| RsmD family RNA methyltransferase [Bacteroides sp. 2_1_33B]
 gi|298377145|ref|ZP_06987099.1| RNA methyltransferase, RsmD family [Bacteroides sp. 3_1_19]
 gi|301310878|ref|ZP_07216807.1| RNA methyltransferase, RsmD family [Bacteroides sp. 20_3]
 gi|256736554|gb|EEU49882.1| RsmD family RNA methyltransferase [Parabacteroides sp. D13]
 gi|262294898|gb|EEY82830.1| RsmD family RNA methyltransferase [Bacteroides sp. 2_1_33B]
 gi|298266129|gb|EFI07788.1| RNA methyltransferase, RsmD family [Bacteroides sp. 3_1_19]
 gi|300830941|gb|EFK61582.1| RNA methyltransferase, RsmD family [Bacteroides sp. 20_3]
          Length = 185

 Score = 43.1 bits (100), Expect = 0.078,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNL 51
           +I+G+    L   P +S D IFADPPY L
Sbjct: 96  LIRGDVFRYLNSAPKQSFDFIFADPPYAL 124


>gi|171318514|ref|ZP_02907666.1| ribosomal protein L11 methyltransferase [Burkholderia ambifaria
           MEX-5]
 gi|171096300|gb|EDT41206.1| ribosomal protein L11 methyltransferase [Burkholderia ambifaria
           MEX-5]
          Length = 300

 Score = 43.1 bits (100), Expect = 0.078,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYI 258
           G   HPT +   L    L  S KPG  +LD   GSG    +A+K   +  +GI++    +
Sbjct: 145 GTGSHPTTR---LCMEWLEQSVKPGQSVLDYGCGSGILAILARKCGANPVVGIDIDPQAV 201

Query: 259 DIATK 263
           + A +
Sbjct: 202 ESARQ 206


>gi|172059590|ref|YP_001807242.1| ribosomal protein L11 methyltransferase [Burkholderia ambifaria
           MC40-6]
 gi|226710056|sp|B1YSW5|PRMA_BURA4 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|171992107|gb|ACB63026.1| ribosomal protein L11 methyltransferase [Burkholderia ambifaria
           MC40-6]
          Length = 300

 Score = 43.1 bits (100), Expect = 0.078,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYI 258
           G   HPT +   L    L  S KPG  +LD   GSG    +A+K   +  +GI++    +
Sbjct: 145 GTGSHPTTR---LCMEWLEQSVKPGQSVLDYGCGSGILAILARKCGANPVVGIDIDPQAV 201

Query: 259 DIATK 263
           + A +
Sbjct: 202 ESARQ 206


>gi|115350559|ref|YP_772398.1| ribosomal protein L11 methyltransferase [Burkholderia ambifaria
           AMMD]
 gi|122324068|sp|Q0BIF9|PRMA_BURCM RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|115280547|gb|ABI86064.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [Burkholderia ambifaria AMMD]
          Length = 300

 Score = 43.1 bits (100), Expect = 0.078,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYI 258
           G   HPT +   L    L  S KPG  +LD   GSG    +A+K   +  +GI++    +
Sbjct: 145 GTGSHPTTR---LCMEWLEQSVKPGQSVLDYGCGSGILAILARKCGANPVVGIDIDPQAV 201

Query: 259 DIATK 263
           + A +
Sbjct: 202 ESARQ 206


>gi|328474072|gb|EGF44877.1| hypothetical protein VP10329_15230 [Vibrio parahaemolyticus 10329]
          Length = 342

 Score = 43.1 bits (100), Expect = 0.080,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 10/99 (10%)

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE-- 285
           +DP  G GT+         + +G+E+ Q ++      I      G  +  V   KRT   
Sbjct: 138 MDPMCGKGTTLFEGLIHGLNVVGVEINQKWVQEIQTFIVKFMKNGRFKHKVSKEKRTSGG 197

Query: 286 PRVAFNLLVERG-----LIQPG---QILTNAQGNISATV 316
            +VA   +VE        +Q       L +A   I+  V
Sbjct: 198 KKVADGFVVEAAASKEDYLQGNLQTMKLYSADTRIADQV 236


>gi|260902386|ref|ZP_05910781.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|308107146|gb|EFO44686.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
          Length = 342

 Score = 43.1 bits (100), Expect = 0.080,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 10/99 (10%)

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE-- 285
           +DP  G GT+         + +G+E+ Q ++      I      G  +  V   KRT   
Sbjct: 138 MDPMCGKGTTLFEGLIHGLNVVGVEINQKWVQEIQTFIVKFMKNGRFKHKVSKEKRTSGG 197

Query: 286 PRVAFNLLVERG-----LIQPG---QILTNAQGNISATV 316
            +VA   +VE        +Q       L +A   I+  V
Sbjct: 198 KKVADGFVVEAAASKEDYLQGNLQTMKLYSADTRIADQV 236


>gi|167622227|ref|YP_001672521.1| putative methyltransferase [Shewanella halifaxensis HAW-EB4]
 gi|167352249|gb|ABZ74862.1| putative methyltransferase [Shewanella halifaxensis HAW-EB4]
          Length = 206

 Score = 43.1 bits (100), Expect = 0.080,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 21/27 (77%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY 49
           +IKG+S+++L   P++  DL+F DPP+
Sbjct: 104 VIKGDSLALLANKPSEGFDLVFIDPPF 130


>gi|153840582|ref|ZP_01993249.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
 gi|149745754|gb|EDM56884.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
          Length = 263

 Score = 43.1 bits (100), Expect = 0.080,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 10/99 (10%)

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE-- 285
           +DP  G GT+         + +G+E+ Q ++      I      G  +  V   KRT   
Sbjct: 138 MDPMCGKGTTLFEGLIHGLNVVGVEINQKWVQEIQTFIVKFMKNGRFKHKVSKEKRTSGG 197

Query: 286 PRVAFNLLVERG-----LIQPG---QILTNAQGNISATV 316
            +VA   +VE        +Q       L +A   I+  V
Sbjct: 198 KKVADGFVVEAAASKEDYLQGNLQTMKLYSADTRIADQV 236


>gi|153843723|ref|ZP_01993585.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
 gi|149745298|gb|EDM56549.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
          Length = 174

 Score = 43.1 bits (100), Expect = 0.080,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 10/99 (10%)

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE-- 285
           +DP  G GT+         + +G+E+ Q ++      I      G  +  V   KRT   
Sbjct: 33  MDPMCGKGTTLFEGLIHGLNVVGVEINQKWVQEIQTFIVKFMKNGRFKHKVSKEKRTSGG 92

Query: 286 PRVAFNLLVERG-----LIQPG---QILTNAQGNISATV 316
            +VA   +VE        +Q       L +A   I+  V
Sbjct: 93  KKVADGFVVEAAASKEDYLQGNLQTMKLYSADTRIADQV 131


>gi|157963792|ref|YP_001503826.1| putative methyltransferase [Shewanella pealeana ATCC 700345]
 gi|157848792|gb|ABV89291.1| putative methyltransferase [Shewanella pealeana ATCC 700345]
          Length = 209

 Score = 43.1 bits (100), Expect = 0.080,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 21/27 (77%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY 49
           +IKG+S+++L   P++  DL+F DPP+
Sbjct: 104 VIKGDSLALLANKPSEGFDLVFIDPPF 130


>gi|28899398|ref|NP_799003.1| hypothetical protein VP2624 [Vibrio parahaemolyticus RIMD 2210633]
 gi|260366269|ref|ZP_05778728.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|260878914|ref|ZP_05891269.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034]
 gi|260898285|ref|ZP_05906781.1| conserved hypothetical protein [Vibrio parahaemolyticus Peru-466]
 gi|28807634|dbj|BAC60887.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308085858|gb|EFO35553.1| conserved hypothetical protein [Vibrio parahaemolyticus Peru-466]
 gi|308090469|gb|EFO40164.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034]
 gi|308113511|gb|EFO51051.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
          Length = 342

 Score = 43.1 bits (100), Expect = 0.080,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 10/99 (10%)

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE-- 285
           +DP  G GT+         + +G+E+ Q ++      I      G  +  V   KRT   
Sbjct: 138 MDPMCGKGTTLFEGLIHGLNVVGVEINQKWVQEIQTFIVKFMKNGRFKHKVSKEKRTSGG 197

Query: 286 PRVAFNLLVERG-----LIQPG---QILTNAQGNISATV 316
            +VA   +VE        +Q       L +A   I+  V
Sbjct: 198 KKVADGFVVEAAASKEDYLQGNLQTMKLYSADTRIADQV 236


>gi|170721460|ref|YP_001749148.1| adenine-specific DNA methylase containing a Zn-ribbon-like protein
           [Pseudomonas putida W619]
 gi|169759463|gb|ACA72779.1| adenine-specific DNA methylase containing a Zn-ribbon-like protein
           [Pseudomonas putida W619]
          Length = 651

 Score = 43.1 bits (100), Expect = 0.080,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 56/161 (34%), Gaps = 23/161 (14%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYN------------------LQLNGQLYRPDHS 63
           +I  G++ + L  L + SVD++  DPPY                   L + G L R DH 
Sbjct: 423 RIHLGSARA-LSFLKSGSVDVVMTDPPYFDNIAYSELAQFFTPWLKALGVIGSLPR-DHV 480

Query: 64  LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
           + +++     +  S + +            RVL+P G +     +        + + +  
Sbjct: 481 MSESLVARKHQPQSVQHFITGLGEAFAEIERVLRPKGVVAFSYRHTEAPAWLALAEAI-- 538

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
                +   +  PMP   G       E  +W +     +G 
Sbjct: 539 -AATGLHVTRVLPMPGEVGMGLHGQGERGLWDAIFILRRGR 578



 Score = 39.6 bits (91), Expect = 0.79,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +LDPF G GTS   A +L  +  G ++      ++   + + 
Sbjct: 55  VLDPFVGGGTSVFEAFRLGANVHGCDVDPVACAVSQLELDAA 96


>gi|325518405|gb|EGC98123.1| ribosomal protein L11 methyltransferase [Burkholderia sp. TJI49]
          Length = 300

 Score = 43.1 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYI 258
           G   HPT +   L    L  S +PG  +LD   GSG    +AKK   +  +GI++    +
Sbjct: 145 GTGSHPTTR---LCMEWLEQSVQPGQSVLDYGCGSGILAILAKKCGANPVVGIDIDPQAV 201

Query: 259 DIATK 263
           + A +
Sbjct: 202 ESARQ 206


>gi|303257419|ref|ZP_07343432.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47]
 gi|331000630|ref|ZP_08324285.1| hypothetical protein HMPREF9439_01933 [Parasutterella
           excrementihominis YIT 11859]
 gi|302859776|gb|EFL82854.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47]
 gi|329570902|gb|EGG52610.1| hypothetical protein HMPREF9439_01933 [Parasutterella
           excrementihominis YIT 11859]
          Length = 561

 Score = 43.1 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 12/69 (17%)

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
           LDP  GSGT   +A+++     G++     + IA   +            +L+G +  P 
Sbjct: 161 LDPCCGSGTFLILAQEMGLKICGMDSDPIAVMIAKANL------------ILSGAKEYPD 208

Query: 288 VAFNLLVER 296
           V     V R
Sbjct: 209 VRVIDFVNR 217


>gi|221202424|ref|ZP_03575456.1| ribosomal protein L11 methyltransferase [Burkholderia multivorans
           CGD2M]
 gi|221208116|ref|ZP_03581121.1| ribosomal protein L11 methyltransferase [Burkholderia multivorans
           CGD2]
 gi|221172019|gb|EEE04461.1| ribosomal protein L11 methyltransferase [Burkholderia multivorans
           CGD2]
 gi|221177701|gb|EEE10116.1| ribosomal protein L11 methyltransferase [Burkholderia multivorans
           CGD2M]
          Length = 300

 Score = 43.1 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYI 258
           G   HPT +   L    L  S +PG  +LD   GSG    +AKK   +  +GI++    +
Sbjct: 145 GTGSHPTTR---LCMEWLEQSVQPGQSVLDYGCGSGILAILAKKCGANPVVGIDIDPQAV 201

Query: 259 DIATK 263
           + A +
Sbjct: 202 ESARQ 206


>gi|170695332|ref|ZP_02886478.1| ribosomal protein L11 methyltransferase [Burkholderia graminis
           C4D1M]
 gi|170139732|gb|EDT07914.1| ribosomal protein L11 methyltransferase [Burkholderia graminis
           C4D1M]
          Length = 300

 Score = 43.1 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 57/143 (39%), Gaps = 16/143 (11%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYI 258
           G   HPT +   L    L  S KPG  +LD   GSG    +AKK   +   GI++    +
Sbjct: 145 GTGSHPTTR---LCMEWLEQSVKPGQSVLDYGCGSGILAILAKKCGANPVYGIDIDPQAV 201

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + A  R  S +    +   +       P   F ++V   L  P +++ +    +S+ V  
Sbjct: 202 ESA--RHNSERNRAEVTYGLPD---ECPTGEFEIVVANILSNPLKLMASM---LSSKVKP 253

Query: 319 DGTLISGTELGS----IHRVGAK 337
            G +     L      + +V A+
Sbjct: 254 GGRIALSGILARQADEVAQVYAR 276


>gi|167586069|ref|ZP_02378457.1| ribosomal protein L11 methyltransferase [Burkholderia ubonensis Bu]
          Length = 300

 Score = 43.1 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYI 258
           G   HPT +   L    L  S +PG  +LD   GSG    +AKK   +  +GI++    +
Sbjct: 145 GTGSHPTTR---LCMEWLEQSVQPGQSVLDYGCGSGILAILAKKCGANLVVGIDIDPQAV 201

Query: 259 DIATK 263
           + A +
Sbjct: 202 ESARQ 206


>gi|162139860|ref|YP_413430.2| ribosomal protein L11 methyltransferase [Nitrosospira multiformis
           ATCC 25196]
          Length = 304

 Score = 43.1 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 6/103 (5%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HP+     L    L  +   G+ +LD   GSG     A K+     +GI++    +
Sbjct: 144 GTGTHPST---QLCLEWLDENLGGGEDVLDYGCGSGILAIAALKMGAHHVVGIDIDPQAV 200

Query: 259 DIATK--RIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLI 299
           + + +  R+           T +  +    R  +  +V   ++
Sbjct: 201 EASCQNARLNQCSETEIEFHTQMAERTDTERGGWANIVVANIL 243


>gi|161525950|ref|YP_001580962.1| ribosomal protein L11 methyltransferase [Burkholderia multivorans
           ATCC 17616]
 gi|189349331|ref|YP_001944959.1| ribosomal protein L11 methyltransferase [Burkholderia multivorans
           ATCC 17616]
 gi|221213232|ref|ZP_03586207.1| ribosomal protein L11 methyltransferase [Burkholderia multivorans
           CGD1]
 gi|226710059|sp|A9AI41|PRMA_BURM1 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|160343379|gb|ABX16465.1| ribosomal protein L11 methyltransferase [Burkholderia multivorans
           ATCC 17616]
 gi|189333353|dbj|BAG42423.1| ribosomal protein L11 methyltransferase [Burkholderia multivorans
           ATCC 17616]
 gi|221166684|gb|EED99155.1| ribosomal protein L11 methyltransferase [Burkholderia multivorans
           CGD1]
          Length = 300

 Score = 43.1 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYI 258
           G   HPT +   L    L  S +PG  +LD   GSG    +AKK   +  +GI++    +
Sbjct: 145 GTGSHPTTR---LCMEWLEQSVQPGQSVLDYGCGSGILAILAKKCGANPVVGIDIDPQAV 201

Query: 259 DIATK 263
           + A +
Sbjct: 202 ESARQ 206


>gi|82411929|gb|ABB76038.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [Nitrosospira multiformis ATCC 25196]
          Length = 321

 Score = 43.1 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 6/103 (5%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HP+     L    L  +   G+ +LD   GSG     A K+     +GI++    +
Sbjct: 161 GTGTHPST---QLCLEWLDENLGGGEDVLDYGCGSGILAIAALKMGAHHVVGIDIDPQAV 217

Query: 259 DIATK--RIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLI 299
           + + +  R+           T +  +    R  +  +V   ++
Sbjct: 218 EASCQNARLNQCSETEIEFHTQMAERTDTERGGWANIVVANIL 260


>gi|333011539|gb|EGK30952.1| ycgA domain protein [Shigella flexneri K-227]
 gi|333011653|gb|EGK31062.1| ycgA domain protein [Shigella flexneri K-227]
          Length = 49

 Score = 43.1 bits (100), Expect = 0.082,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
             A +  R +IGIE+ + Y     +R+ +VQ
Sbjct: 1   MAALQSGRRYIGIELLEQYHRAGQQRLTAVQ 31


>gi|289811979|ref|ZP_06542608.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 380

 Score = 43.1 bits (100), Expect = 0.083,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 20/102 (19%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + +  L +   +  DLIF DPP         +     + ++     D       
Sbjct: 269 HRLIQADCLGWLRE-ANEQFDLIFIDPP--------TFSNSKRMEESFDVQRDHV----- 314

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                 A +   +R+L+  GT+    +          L  L 
Sbjct: 315 ------ALMKDLKRLLRKGGTIMFSNNKRGFRMDLEGLAELG 350


>gi|19173635|ref|NP_597438.1| putative METHYLTRANSFERASE [Encephalitozoon cuniculi GB-M1]
 gi|19170841|emb|CAD26615.1| putative METHYLTRANSFERASE [Encephalitozoon cuniculi GB-M1]
          Length = 247

 Score = 43.1 bits (100), Expect = 0.083,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 7/90 (7%)

Query: 186 IPICSGSERLRNKDGEKLHPTQK------PEALLSRILVSSTKPGD-IILDPFFGSGTSG 238
           IP  SG   L   + + L  TQ        + L  R L         ++LD   GSG SG
Sbjct: 3   IPELSGPAELYYDEEQSLRYTQNSRIVYIQKELTQRCLELLDAKDGGLVLDVGCGSGLSG 62

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           +V  +    +IG+++  + + +  +R+   
Sbjct: 63  SVLSESGYPWIGVDISMEMLKLGMERMEGA 92


>gi|255527847|ref|ZP_05394695.1| O-methyltransferase family 3 [Clostridium carboxidivorans P7]
 gi|296185448|ref|ZP_06853858.1| O-methyltransferase [Clostridium carboxidivorans P7]
 gi|255508458|gb|EET84850.1| O-methyltransferase family 3 [Clostridium carboxidivorans P7]
 gi|296050282|gb|EFG89706.1| O-methyltransferase [Clostridium carboxidivorans P7]
          Length = 215

 Score = 42.7 bits (99), Expect = 0.084,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 5/48 (10%)

Query: 3   QKNSLAINENQNSIFEW----KDKIIKGNSISVLEKLPAKSVDLIFAD 46
           +++   I   Q +I ++    K KII+G+ + VL++L  K  DLIF D
Sbjct: 87  ERDEKMIAAAQRNIEKYGFADKIKIIQGDCLEVLKQLNDKY-DLIFMD 133


>gi|254516160|ref|ZP_05128220.1| modification methylase, type III R/M system [gamma proteobacterium
           NOR5-3]
 gi|219675882|gb|EED32248.1| modification methylase, type III R/M system [gamma proteobacterium
           NOR5-3]
          Length = 1134

 Score = 42.7 bits (99), Expect = 0.084,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 6/52 (11%)

Query: 223 PGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYIDIATKRIASV 268
              ++LD F GSGT+     +        R +I +EM   +  +   RI  V
Sbjct: 817 KKAVVLDYFAGSGTTAHAVVEKNRTDGGSRKYILVEMGDYFNAVLKPRIQKV 868



 Score = 41.5 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 55/150 (36%), Gaps = 21/150 (14%)

Query: 15  SIFEWKDK----IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
           SI +  ++    ++   +   +  L A   + V  ++ DPPYN   +  +Y+  +     
Sbjct: 496 SIEDLDNQCDGLLVNSENFQAINLLTARYREEVTCVYIDPPYNTDASSIMYKNGYKSSS- 554

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
                        + +  +  + A + +LK +G L           +  +L++     L 
Sbjct: 555 -------------WASLMKDRVDASKHLLKASGILVAAIDDEQQTELSYILRDSFNSDLL 601

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
            +   +SNP        +  +HE  ++A  
Sbjct: 602 GVFSIRSNPSGRPTKTGYSVSHEYNLFAGK 631


>gi|3219718|gb|AAC23514.1| NcoI DNA modification methyltransferase [Gordonia rubripertincta]
          Length = 422

 Score = 42.7 bits (99), Expect = 0.084,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA-SVQP---LGNIELTVLTGK 282
           +LDP+ GSGT+   A++   + +G+++      +A  ++A   +P   L   +   +  +
Sbjct: 57  VLDPYSGSGTTVIAAEESGAAGLGVDVHPFVTRVAKAKLAWRAEPDVFLKRAKAVRIEAE 116

Query: 283 RTEP 286
           R +P
Sbjct: 117 RLQP 120


>gi|15668892|ref|NP_247695.1| hypothetical protein MJ_0710 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2501585|sp|Q58120|TMG10_METJA RecName: Full=N(2),N(2)-dimethylguanosine tRNA methyltransferase
           Trm-G10; AltName: Full=tRNA:G10 dimethyltransferase
 gi|1591426|gb|AAB98704.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 351

 Score = 42.7 bits (99), Expect = 0.084,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 5/107 (4%)

Query: 203 LHP-TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
            HP    P+   + + ++  K GDI+LDPF G+G     A  +    IG ++      +A
Sbjct: 184 FHPGCMLPKLARAMVNLARVKEGDIVLDPFCGTGGFLIEAGLIGAKLIGCDID---WRMA 240

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNA 308
           +  + +++   N+   V+  KR + +     L E  + +   I+T+ 
Sbjct: 241 SGTLINLEEY-NLLDKVIKVKRLDAKYVKEFLNELNIEKVDAIVTDP 286



 Score = 39.6 bits (91), Expect = 0.92,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 3/82 (3%)

Query: 30  SVLEKLPAKSVDLIFADPPYNLQ--LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
             L +L  + VD I  DPPY +     G++ +   +L + + D+     ++         
Sbjct: 269 EFLNELNIEKVDAIVTDPPYGISTAKKGEIEKILETLPEVIKDNGYFVFAYPKKIELDME 328

Query: 88  WLLACRRVLKPNGTLWVIGSYH 109
            L    +V    G +  I  Y 
Sbjct: 329 -LEGLYKVYIHKGLIRHIHVYK 349


>gi|307329692|ref|ZP_07608849.1| Methyltransferase type 11 [Streptomyces violaceusniger Tu 4113]
 gi|306884632|gb|EFN15661.1| Methyltransferase type 11 [Streptomyces violaceusniger Tu 4113]
          Length = 372

 Score = 42.7 bits (99), Expect = 0.085,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 47/116 (40%), Gaps = 15/116 (12%)

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           +R+     +    +LD   G+G+   +A +      G++     +++A  ++      G 
Sbjct: 37  ARLWGWLPERAGDVLDLGCGTGSLALLAAERGHRVTGVDRSPRMVELARAKL------GG 90

Query: 274 IELTVLTGKRTEPRV---AFNLLVERGLIQPGQILTNAQ---GNISATVCADGTLI 323
              TVL G   EP +   +F++++ R L+     L + Q         +   G L+
Sbjct: 91  TGATVLVGDAAEPPLGEGSFDVVLVRHLLW---TLPDRQSVLRRWVRLLRPGGRLV 143


>gi|14521186|ref|NP_126661.1| hypothetical protein PAB1719 [Pyrococcus abyssi GE5]
 gi|5458404|emb|CAB49892.1| Methyltransferase, putative, DUF248 family [Pyrococcus abyssi GE5]
          Length = 373

 Score = 42.7 bits (99), Expect = 0.085,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 7/93 (7%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           P  L   ++  S      +LDPF G+GT          +  G ++ Q+ I  A + +  +
Sbjct: 183 PPRLARIMVNLSEIRRGNVLDPFCGTGTIIMELTLQGLNAYGSDISQERILEAKQNVEWL 242

Query: 269 QPLGNIEL-------TVLTGKRTEPRVAFNLLV 294
           +    +E         V   ++  PR  FN ++
Sbjct: 243 RREFKVEKYPSLRVCDVRKLRKCFPRTRFNAII 275


>gi|84490107|ref|YP_448339.1| DNA modification methylase [Methanosphaera stadtmanae DSM 3091]
 gi|84373426|gb|ABC57696.1| predicted DNA modification methylase [Methanosphaera stadtmanae DSM
           3091]
          Length = 356

 Score = 42.7 bits (99), Expect = 0.086,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 195 LRNKDGEK--LHPTQKPEAL-LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
             NK  ++   HP      L L  + ++     D +LDPF G+G     A  L    IG 
Sbjct: 175 FDNKPHKRPYFHPGSMSPKLALCMVNLAHVHNNDTVLDPFCGTGGILIEAGILNTKLIGS 234

Query: 252 EMKQDYID 259
           ++++   +
Sbjct: 235 DIEKHMYE 242


>gi|167564152|ref|ZP_02357068.1| ribosomal protein L11 methyltransferase [Burkholderia oklahomensis
           EO147]
          Length = 300

 Score = 42.7 bits (99), Expect = 0.086,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYI 258
           G   HPT +   L    L  + +PG  +LD   GSG    +AKK     + GI++    +
Sbjct: 145 GTGSHPTTR---LCMEWLEQTVQPGQTVLDYGCGSGILAILAKKCGAGSVTGIDIDPQAV 201

Query: 259 DIATK 263
           + A +
Sbjct: 202 EAACQ 206


>gi|209522375|ref|ZP_03270990.1| ribosomal protein L11 methyltransferase [Burkholderia sp. H160]
 gi|209497193|gb|EDZ97433.1| ribosomal protein L11 methyltransferase [Burkholderia sp. H160]
          Length = 300

 Score = 42.7 bits (99), Expect = 0.088,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 57/143 (39%), Gaps = 16/143 (11%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYI 258
           G   HPT +   L    +  S K G  +LD   GSG    +AKK      IGI++    +
Sbjct: 145 GTGSHPTTR---LCMEWIEQSVKAGQSVLDYGCGSGILAILAKKCGADPVIGIDIDPQAV 201

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + A  R  S +    +   +       P   F+++V   L  P +++ +    +S+ V  
Sbjct: 202 ESA--RHNSERNHAEVTYGLPD---ACPAGEFDVVVANILSNPLKLMASM---LSSKVKP 253

Query: 319 DGTLISGTELGS----IHRVGAK 337
            G +     L      + +V A+
Sbjct: 254 GGRIALSGILARQADEVAQVYAR 276


>gi|119897152|ref|YP_932365.1| ribosomal protein L11 methyltransferase [Azoarcus sp. BH72]
 gi|119669565|emb|CAL93478.1| ribosomal protein L11 methyltransferase [Azoarcus sp. BH72]
          Length = 294

 Score = 42.7 bits (99), Expect = 0.088,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 14/98 (14%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L    L  + +PG  +LD   GSG  G  A +L     +GI++    I
Sbjct: 143 GTGSHPTTR---LCLEWLCDTVQPGTSVLDYGCGSGILGIAAARLGAGDVLGIDIDDKAI 199

Query: 259 DIATK---------RIA-SVQPLGNIELTVLTGKRTEP 286
           + A           R+  S  P+G+    V+    T P
Sbjct: 200 EAARDNASRNGVTLRLQHSAVPVGDTFAVVVANILTNP 237


>gi|309790457|ref|ZP_07685018.1| ribosomal protein L11 methyltransferase [Oscillochloris trichoides
           DG6]
 gi|308227505|gb|EFO81172.1| ribosomal protein L11 methyltransferase [Oscillochloris trichoides
           DG6]
          Length = 322

 Score = 42.7 bits (99), Expect = 0.089,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 53/151 (35%), Gaps = 27/151 (17%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G  LHPT     L  R+L +  +PG   LD   GSG     A KL     + I+      
Sbjct: 143 GTGLHPTT---QLCLRLLETYAQPGLRTLDLGTGSGILAIAAAKLGAGPVLAIDNDPVAA 199

Query: 259 DIATK--RIASVQPL-------------------GNIELTVLTGKRTEPRVAFNLLVERG 297
            +A +  RI  ++ +                   G+          T P      L+   
Sbjct: 200 QVAAENVRINQIEHVVTAGEGSLGAGQHMGHWLSGDFGEDHPADASTPPTTPQFNLIAAN 259

Query: 298 LIQPGQILTNAQGNISATVCADGTLISGTEL 328
           LI   ++L     +++A +   G L+S   +
Sbjct: 260 LI--AKVLVILANDLAAALMPGGILVSSGII 288


>gi|167904337|ref|ZP_02491542.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           NCTC 13177]
          Length = 300

 Score = 42.7 bits (99), Expect = 0.091,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 12/130 (9%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L    L  + +PG  +LD   GSG    +AKK       G+++    +
Sbjct: 145 GTGSHPTTR---LCMEWLEQTVQPGQTVLDYGCGSGILAILAKKCGAGRVTGVDIDPQAV 201

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + A  R  S +   ++   +       P   F+++V   L  P +++ +    +++ V  
Sbjct: 202 EAA--RHNSERNRADVTYGLPDD---CPDGEFDIVVANILSNPLKLMASM---LASKVKP 253

Query: 319 DGTLISGTEL 328
            G +     L
Sbjct: 254 GGRIALSGVL 263


>gi|167721287|ref|ZP_02404523.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           DM98]
          Length = 300

 Score = 42.7 bits (99), Expect = 0.091,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 12/130 (9%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L    L  + +PG  +LD   GSG    +AKK       G+++    +
Sbjct: 145 GTGSHPTTR---LCMEWLEQTVQPGQTVLDYGCGSGILAILAKKCGAGRVTGVDIDPQAV 201

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + A  R  S +   ++   +       P   F+++V   L  P +++ +    +++ V  
Sbjct: 202 EAA--RHNSERNRADVTYGLPDD---CPDGEFDIVVANILSNPLKLMASM---LASKVKP 253

Query: 319 DGTLISGTEL 328
            G +     L
Sbjct: 254 GGRIALSGVL 263


>gi|254190971|ref|ZP_04897477.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           Pasteur 52237]
 gi|157938645|gb|EDO94315.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 302

 Score = 42.7 bits (99), Expect = 0.091,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 12/130 (9%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L    L  + +PG  +LD   GSG    +AKK       G+++    +
Sbjct: 147 GTGSHPTTR---LCMEWLEQTVQPGQTVLDYGCGSGILAILAKKCGAGRVTGVDIDPQAV 203

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + A  R  S +   ++   +       P   F+++V   L  P +++ +    +++ V  
Sbjct: 204 EAA--RHNSERNRADVTYGLPDD---CPDGEFDIVVANILSNPLKLMASM---LASKVKP 255

Query: 319 DGTLISGTEL 328
            G +     L
Sbjct: 256 GGRIALSGVL 265


>gi|261402784|ref|YP_003247008.1| methyltransferase small [Methanocaldococcus vulcanius M7]
 gi|261369777|gb|ACX72526.1| methyltransferase small [Methanocaldococcus vulcanius M7]
          Length = 217

 Score = 42.7 bits (99), Expect = 0.092,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 57/153 (37%), Gaps = 26/153 (16%)

Query: 199 DGEKLHPTQK--------PEALLSRILV--SSTKPGDIILDPFFGSGTSGAVAKKLR-RS 247
           D  K HP  K           L   IL    +   G++++D   G+G     +K L  + 
Sbjct: 12  DSLKRHPNPKIELEQYTIDGKLAGDILYFAINDFYGNVVIDLGCGTGKLAIGSKLLGAKR 71

Query: 248 FIGIEMKQDYIDIATKRIASV--------QPLGNIELTVLTGKRTEPRVAFNLLVERGLI 299
            IGI++ ++ I +A +    V        + +  I+   +  K  E +    ++++    
Sbjct: 72  AIGIDIDKESIKVAKENAKKVNADVEFYCKDIREIDRQFINEKLKEDKYLKKIIIQNPP- 130

Query: 300 QPGQILTNAQGNISATVCADGTLISGTELGSIH 332
                   AQ   +  +  D  L  G  + +IH
Sbjct: 131 ------FGAQKKQADRIFVDKALEIGDVVYTIH 157


>gi|297193672|ref|ZP_06911070.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151875|gb|EFH31393.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 217

 Score = 42.7 bits (99), Expect = 0.092,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 20/120 (16%)

Query: 214 SRILVSSTKP-GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV---- 268
           SR+L +   P    +LD   G+G+  A+  +      GI++    +D A  ++++     
Sbjct: 36  SRLLTAWLPPDPSSVLDVGCGTGSLSALVAEAGHRVTGIDLSPRMVDRARAKLSAAGLPA 95

Query: 269 -QPLGNIELTVLTGKRTEPRVAFNLLVERGLI----QPGQILTNAQGNISATVCADGTLI 323
              +G+        +R      F++L+ R L+     PG  L +     +A +   GTLI
Sbjct: 96  RFLVGDAAAPPTGDER------FDVLLSRHLVWTLPDPGAALAD----WTARLRPGGTLI 145


>gi|221068882|ref|ZP_03544987.1| protein of unknown function DUF1156 [Comamonas testosteroni KF-1]
 gi|220713905|gb|EED69273.1| protein of unknown function DUF1156 [Comamonas testosteroni KF-1]
          Length = 1091

 Score = 42.7 bits (99), Expect = 0.092,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 27/138 (19%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYN-----------------LQLNGQ---LYRPDH 62
           + +G+S   L +L + S+DL+  DPP+                  L L G+   ++  D+
Sbjct: 674 VHQGSSTD-LAQLESSSLDLVITDPPFGGLLHYSELADFFYVWLRLALKGKYPQIFGADY 732

Query: 63  ---SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL---WVIGSYHNIFRIGT 116
              SL      + +       Y            R+LKP G +   +   +      +  
Sbjct: 733 TPKSLEAVANRAREPEDPDGFYQRLLTQCWSEAHRLLKPGGIMAFTFHHSADEPWVAVLE 792

Query: 117 MLQNLNFWILNDIVWRKS 134
            L +  F++      R  
Sbjct: 793 SLFDAGFYLEATYPIRSD 810


>gi|260778573|ref|ZP_05887465.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260604737|gb|EEX31032.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 707

 Score = 42.7 bits (99), Expect = 0.093,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 41/130 (31%), Gaps = 22/130 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + +  + + +  LE+      DLIF DPP         +     +  +     D      
Sbjct: 594 QHRFEQADCLQWLER-STAQFDLIFIDPP--------TFSNSKRMEQSFDVQRDHI---- 640

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                    +   +R+L+  GT+    +  +       L  L     N  +  ++ PM  
Sbjct: 641 -------QLMKNLKRLLRNGGTIVFSNNKRHFKMDMDGLDELGLVAKN--ISHQTLPMDF 691

Query: 140 FRGRRFQNAH 149
            R +   N  
Sbjct: 692 SRNKHIHNCW 701


>gi|323492635|ref|ZP_08097779.1| 23S rRNA m(2)G2445 methyltransferase [Vibrio brasiliensis LMG
           20546]
 gi|323313010|gb|EGA66130.1| 23S rRNA m(2)G2445 methyltransferase [Vibrio brasiliensis LMG
           20546]
          Length = 707

 Score = 42.7 bits (99), Expect = 0.096,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 41/130 (31%), Gaps = 22/130 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + +  + + +  LE       DLIF DPP         +     +  +     D      
Sbjct: 594 QHRFEQADCLQWLET-STAQFDLIFIDPP--------TFSNSKRMEQSFDVQRDHI---- 640

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                    +   +R+L+  GT+    +  +       L+ L     N  +  ++ P+  
Sbjct: 641 -------QLMKNLKRLLRAGGTIVFSNNKRHFKMDLEALEQLGLEAKN--ISHQTLPLDF 691

Query: 140 FRGRRFQNAH 149
            R +   N  
Sbjct: 692 ARNKHIHNCW 701


>gi|21220225|ref|NP_626004.1| hypothetical protein SCO1731 [Streptomyces coelicolor A3(2)]
 gi|256788661|ref|ZP_05527092.1| hypothetical protein SlivT_29592 [Streptomyces lividans TK24]
 gi|289772556|ref|ZP_06531934.1| conserved hypothetical protein [Streptomyces lividans TK24]
 gi|5531441|emb|CAB50946.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
 gi|289702755|gb|EFD70184.1| conserved hypothetical protein [Streptomyces lividans TK24]
          Length = 205

 Score = 42.7 bits (99), Expect = 0.096,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 52/130 (40%), Gaps = 18/130 (13%)

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           +R+      P   +LD   G+G+   +A +      G+++    +++A  ++A       
Sbjct: 41  ARLASWLPAPPGDVLDLGCGTGSLSLLAAEQGHRVTGVDLSPAMVELARTKLA------G 94

Query: 274 IELTVLTGKRTEPRVA---FNLLVERGLI----QPGQILTNAQGNISATVCADGTLI-SG 325
            +   LTG    P V    F+ ++ R ++     PG+ L     +    +   G L+   
Sbjct: 95  RDAVFLTGDAAAPPVGEQRFDAVLVRHVLWTLPDPGRAL----RHWRQLLRPGGRLVLVE 150

Query: 326 TELGSIHRVG 335
              GS+  VG
Sbjct: 151 GVWGSVSPVG 160


>gi|307194189|gb|EFN76606.1| Uncharacterized methyltransferase WBSCR22 [Harpegnathos saltator]
          Length = 276

 Score = 42.7 bits (99), Expect = 0.096,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 210 EALLSRILVSSTKPGD---IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
             +  R +     P D   ++LD   GSG SG+V ++   S+IG+++    +D+A +R
Sbjct: 34  VQMCERAIELLVLPEDQSCLLLDIGCGSGLSGSVLEEQGHSWIGVDISSAMLDVAKER 91


>gi|269103647|ref|ZP_06156344.1| ribosomal protein L11 methyltransferase [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163545|gb|EEZ42041.1| ribosomal protein L11 methyltransferase [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 294

 Score = 42.7 bits (99), Expect = 0.096,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 34/108 (31%), Gaps = 7/108 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S    P       L +     G   HPT    +L    
Sbjct: 96  WEREWMDNFHPMRFGRRLWICPSWREAPEPEAVNVLLDPGLAFGTGTHPTT---SLCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           L      G  ++D   GSG     A KL     IGI++    I  +  
Sbjct: 153 LDGQDLTGKTVIDFGCGSGILAIAALKLGAAKVIGIDIDPQAILASRD 200


>gi|188596421|pdb|3CJT|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
           With Dimethylated Ribosomal Protein L11
 gi|188596423|pdb|3CJT|C Chain C, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
           With Dimethylated Ribosomal Protein L11
 gi|188596425|pdb|3CJT|E Chain E, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
           With Dimethylated Ribosomal Protein L11
 gi|188596427|pdb|3CJT|G Chain G, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
           With Dimethylated Ribosomal Protein L11
 gi|188596429|pdb|3CJT|I Chain I, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
           With Dimethylated Ribosomal Protein L11
 gi|188596431|pdb|3CJT|K Chain K, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
           With Dimethylated Ribosomal Protein L11
 gi|188596433|pdb|3CJT|M Chain M, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
           With Dimethylated Ribosomal Protein L11
 gi|188596435|pdb|3CJT|O Chain O, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
           With Dimethylated Ribosomal Protein L11
          Length = 254

 Score = 42.7 bits (99), Expect = 0.096,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
            L  + L    +PGD +LD   GSG     A+KL    +G+++  
Sbjct: 108 RLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDP 152


>gi|65320695|ref|ZP_00393654.1| COG2230: Cyclopropane fatty acid synthase and related
           methyltransferases [Bacillus anthracis str. A2012]
          Length = 390

 Score = 42.7 bits (99), Expect = 0.096,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 78/214 (36%), Gaps = 12/214 (5%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
            + S    +K    +  A      +   +  WL    + S      + + L   Q    +
Sbjct: 96  YFKSKWNFSKQKNKDDIAHHYDIGNDFYKL-WLDETMTYSCAYFQNEQDSLTTAQ-HNKV 153

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
              +     + GD +LD   G G    A AK+     +G+ + ++    A++RI   + L
Sbjct: 154 BHILKKLXLQKGDTLLDIGCGWGELITAAAKQYGVKAMGVTLSEEQYAKASERIKQ-EGL 212

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLI-QPGQILTNAQGNISATVCADGTLISGTELGS 330
            ++    L   R      F+ +V  G+I   G+           T+  DG +        
Sbjct: 213 TDLVEVSLLDYRDIKNQKFDKIVSVGMIEHVGKDNITQYFETVNTLLNDGGISL------ 266

Query: 331 IHRVGAKVSGSETCNGWNFWYFEKLGELHSINTL 364
           +H + +  +G  T NGW   Y    G + ++N L
Sbjct: 267 LHCITSPANGGAT-NGWIEKYIFPGGYVPAVNEL 299


>gi|291523886|emb|CBK89473.1| Putative RNA methylase family UPF0020 [Eubacterium rectale DSM
           17629]
          Length = 182

 Score = 42.7 bits (99), Expect = 0.097,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            GSGT+   AK L R  +G+++    + I+ 
Sbjct: 1   MGSGTTLVEAKLLNRHAVGVDINPQSVSISE 31



 Score = 37.7 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 54/170 (31%), Gaps = 29/170 (17%)

Query: 5   NSLAINE-NQNSIFEWKDKII--KGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRP 60
            S++I+E N    +E   KI    GN+   L  +    +D I   PPY N+    +    
Sbjct: 25  QSVSISETNLQFQYESNSKIFTRNGNATD-LHFIKDSRIDFICTHPPYANIIKYSKGIEG 83

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNI-------F 112
           D SL+           + + + +  +       RVLK       +IG            F
Sbjct: 84  DISLL-----------AVDDFLSEMKKVAEESFRVLKKGKMCAVMIGDVRKYGKVIPLGF 132

Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN-----AHETLIWASP 157
           R+        F     I+  + N           N     AHE +     
Sbjct: 133 RMMECFLQAGFMNKEIIIKEQHNCCSTEYWETKNNNFLLLAHEYIFVFQK 182


>gi|261252954|ref|ZP_05945527.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio orientalis
           CIP 102891]
 gi|260936345|gb|EEX92334.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio orientalis
           CIP 102891]
          Length = 707

 Score = 42.7 bits (99), Expect = 0.097,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 44/130 (33%), Gaps = 22/130 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + +  + + +  LEK  +   DLIF DPP         +     +  +     D      
Sbjct: 594 QHRFEQADCLQWLEK-SSAQFDLIFIDPP--------TFSNSKRMEQSFDVQRDHI---- 640

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                    +   +R+L+P GT+    +  +       LQ L     N  +  ++ P+  
Sbjct: 641 -------QLMKNLKRLLRPEGTIVFSNNKRHFKMDLESLQELGLAAKN--ISSQTLPLDF 691

Query: 140 FRGRRFQNAH 149
            R +   N  
Sbjct: 692 SRNKHIHNCW 701


>gi|315658146|ref|ZP_07911018.1| ribosomal protein L11 methyltransferase [Staphylococcus lugdunensis
           M23590]
 gi|315496475|gb|EFU84798.1| ribosomal protein L11 methyltransferase [Staphylococcus lugdunensis
           M23590]
          Length = 312

 Score = 42.7 bits (99), Expect = 0.098,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 61/196 (31%), Gaps = 22/196 (11%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNK------DGEKLHPTQKPEALLSRILVSS 220
           NY     A++   +   W       +E L  +       G   HPT    ++    +   
Sbjct: 114 NYFHPFRASKRFTIVPSWETYTKDSNEELCIELDPGMAFGTGDHPTT---SMCLHAIEKY 170

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
                 ++D   GSG        L  R    I++    I +A +          IE    
Sbjct: 171 VSSDKNVIDVGTGSGILSIACHLLGVRHIKAIDIDDMAIKVAIENFKKNHCDAVIEANTG 230

Query: 280 TGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIH------- 332
              + E +     +V   ++    I+     +   T+  DG  I+   +   H       
Sbjct: 231 NLLKDETK--KYDVVIANIL--AHIIDEMIEDAYNTLNEDGYFITSGIITEKHLEIEAHM 286

Query: 333 -RVGAKVSGSETCNGW 347
            +VG  +   E  NGW
Sbjct: 287 KQVGFDIISIEQNNGW 302


>gi|218261571|ref|ZP_03476331.1| hypothetical protein PRABACTJOHN_01999 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223950|gb|EEC96600.1| hypothetical protein PRABACTJOHN_01999 [Parabacteroides johnsonii
           DSM 18315]
          Length = 911

 Score = 42.7 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 187 PICSGSERLRNKDGEKLHP--TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           P  +     +N      H   T+ P   + R ++  T+PGDII D F G+G +G  A+
Sbjct: 117 PYSADVSEGKNNPVYTAHTYHTKVPHPAIMRYILHYTQPGDIIFDGFCGTGMTGVAAQ 174



 Score = 38.0 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 8/70 (11%)

Query: 38  KSVDLIFADPPYNLQLNGQ--------LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
            SVD IF DPP+   +N            R   +    V ++  +  S   Y    +   
Sbjct: 511 NSVDYIFTDPPFGANINYSELNSLPEAWLRVTTNNETEVIENSAQGKSPAFYHNEMQKCF 570

Query: 90  LACRRVLKPN 99
               R+LKP 
Sbjct: 571 SEYYRILKPG 580


>gi|242399162|ref|YP_002994586.1| SAM-dependent methyltransferase, UPF0020 family [Thermococcus
           sibiricus MM 739]
 gi|242265555|gb|ACS90237.1| SAM-dependent methyltransferase, UPF0020 family [Thermococcus
           sibiricus MM 739]
          Length = 279

 Score = 42.7 bits (99), Expect = 0.100,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 48/115 (41%), Gaps = 29/115 (25%)

Query: 15  SIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
            +F  ++ ++I+G++  +++K   ++ ++I  DPP    L G LY               
Sbjct: 172 EVFNSQNIQVIQGDASEIIKKFNDETFNVIIHDPP-RFSLAGHLY--------------- 215

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNLNFWILN 127
                      + A+     RVLKP G L+  +G+    +R   + + +   + N
Sbjct: 216 -----------SEAFYKELFRVLKPKGRLFHYVGNPGAKYRKKDLQKGVIERLRN 259


>gi|57242317|ref|ZP_00370256.1| type II restriction enzyme M protein (hsdM) [Campylobacter
           upsaliensis RM3195]
 gi|57016997|gb|EAL53779.1| type II restriction enzyme M protein (hsdM) [Campylobacter
           upsaliensis RM3195]
          Length = 69

 Score = 42.7 bits (99), Expect = 0.100,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 20/29 (68%)

Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           T+G  A  L R FIGIE + ++I+++ KR
Sbjct: 18  TTGIAANLLHRQFIGIEKESEFINLSIKR 46


>gi|306818333|ref|ZP_07452059.1| type III restriction-modification system StyLTI enzyme mod
           [Mobiluncus mulieris ATCC 35239]
 gi|304648842|gb|EFM46141.1| type III restriction-modification system StyLTI enzyme mod
           [Mobiluncus mulieris ATCC 35239]
          Length = 487

 Score = 42.7 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 51/133 (38%), Gaps = 30/133 (22%)

Query: 199 DGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAV--AKKLRRS-------- 247
           DG+      KP  LL R++ +++   GD++LD F GS ++     +++L  +        
Sbjct: 243 DGKGYFDGPKPTKLLQRLITLANLADGDVVLDFFSGSASTAHALFSQELETNTSYHFVLV 302

Query: 248 -----------------FIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAF 290
                                ++ ++ I  A  +I +     N +L +    +  P + F
Sbjct: 303 QLPEPTDTSRDAFKDGYATLCDIGEERIRRAGNKIKAELDESNRQLMLGEEPKQLPDIGF 362

Query: 291 N--LLVERGLIQP 301
               L E  + +P
Sbjct: 363 RVFQLDESSIERP 375


>gi|283769200|ref|ZP_06342104.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bulleidia extructa
           W1219]
 gi|283104176|gb|EFC05555.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bulleidia extructa
           W1219]
          Length = 442

 Score = 42.7 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 24/41 (58%)

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
             D ++D + G+GT G +A K+ +  IGIE+  + ID A  
Sbjct: 294 KEDTVVDLYCGTGTIGILAAKIAKKVIGIEIVPEAIDNAKA 334


>gi|192359493|ref|YP_001982621.1| 23S rRNA m(2)G2445 methyltransferase [Cellvibrio japonicus Ueda107]
 gi|238692446|sp|B3PIL6|RLML_CELJU RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|190685658|gb|ACE83336.1| Putative RNA methylase family UPF0020 family [Cellvibrio japonicus
           Ueda107]
          Length = 751

 Score = 42.7 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 23/119 (19%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N + E ++++ + + +  LE    +  DLI  DPP         +     + D +    D
Sbjct: 636 NGLSEARNRLEQADCLKWLEN-NDQQFDLILLDPP--------SFSNSKRMEDILDIQRD 686

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
                          +    R L   GTL    +  N       L+ L  + + DI  R
Sbjct: 687 HV-----------EMIHNAMRSLSEEGTLIFSNNLRN---FKLDLEALGAYNIEDISAR 731


>gi|89256321|ref|YP_513683.1| 50S ribosomal protein L11, methyltransferase [Francisella
           tularensis subsp. holarctica LVS]
 gi|115314769|ref|YP_763492.1| 50S ribosomal protein L11, methyltransferase [Francisella
           tularensis subsp. holarctica OSU18]
 gi|156502394|ref|YP_001428459.1| 50S ribosomal protein L11, methyltransferase [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|167010848|ref|ZP_02275779.1| ribosomal protein L11 methyltransferase [Francisella tularensis
           subsp. holarctica FSC200]
 gi|254367655|ref|ZP_04983676.1| 50S ribosomal protein L11 methyltransferase [Francisella tularensis
           subsp. holarctica 257]
 gi|290952885|ref|ZP_06557506.1| 50S ribosomal protein L11, methyltransferase [Francisella
           tularensis subsp. holarctica URFT1]
 gi|295313930|ref|ZP_06804495.1| 50S ribosomal protein L11, methyltransferase [Francisella
           tularensis subsp. holarctica URFT1]
 gi|89144152|emb|CAJ79413.1| 50S ribosomal protein L11, methyltransferase [Francisella
           tularensis subsp. holarctica LVS]
 gi|115129668|gb|ABI82855.1| ribosomal protein L11 methyltransferase [Francisella tularensis
           subsp. holarctica OSU18]
 gi|134253466|gb|EBA52560.1| 50S ribosomal protein L11 methyltransferase [Francisella tularensis
           subsp. holarctica 257]
 gi|156252997|gb|ABU61503.1| ribosomal protein L11 methyltransferase [Francisella tularensis
           subsp. holarctica FTNF002-00]
          Length = 281

 Score = 42.7 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 74/224 (33%), Gaps = 29/224 (12%)

Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
           Y N   I T++ N+     N I                  ++E +           + ++
Sbjct: 47  YENHHDIDTIIANIKQKFENIIESEI--------------SYEII---KDQQWEAAWLYD 89

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSSTKPGD 225
           Y+ ++  N ++ +  +W  P           D          E   +    L        
Sbjct: 90  YEPIEIGN-NIVVYPNWRQPPQDNKHTYIVVDPSIAFGCGNHETTKMCLEWLEQHVSKDT 148

Query: 226 IILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            +LD   G+G     A KL   +  GI++  + I+ +   I + Q     + T  +    
Sbjct: 149 TVLDYGCGTGVLAIGAVKLGAKYAEGIDIDPNSIESS---IKNAQENDVTDKTNFSDN-- 203

Query: 285 EPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTEL 328
            P   F+L+V         +L +  GNI+ ++   G L     +
Sbjct: 204 PPTQQFDLVVANIF---SNVLISLVGNITTSLKKGGRLALSGII 244


>gi|312864447|ref|ZP_07724678.1| conserved domain protein [Streptococcus downei F0415]
 gi|311099574|gb|EFQ57787.1| conserved domain protein [Streptococcus downei F0415]
          Length = 127

 Score = 42.7 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 13/55 (23%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKL-----------PAKS--VDLIFADPPYNLQLN 54
           + +  +W +KII G+++ VL+ L              +  + L++ DPP+  + +
Sbjct: 72  EATENDWFNKIIFGDNLQVLKTLVEMKHRGELKNADGTDGIRLVYIDPPFATKQD 126


>gi|149918461|ref|ZP_01906951.1| hypothetical protein PPSIR1_36012 [Plesiocystis pacifica SIR-1]
 gi|149820761|gb|EDM80171.1| hypothetical protein PPSIR1_36012 [Plesiocystis pacifica SIR-1]
          Length = 358

 Score = 42.7 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 60/169 (35%), Gaps = 31/169 (18%)

Query: 27  NSISVLEKLP--AKSVDLIFADPPYNLQL--NGQLYRPDHSLVDAVTDSWDKFSSFEA-- 80
           +       LP    S+D +  DPPY        Q +R       A  D++    +++A  
Sbjct: 87  DCRE----LPYEDDSLDCVVLDPPYMEGFFRRSQTHRAGSGTHAAFRDAYADGRTYQADE 142

Query: 81  -----YDAFTRAWL---LACRRVLKPNGTLWVIGSYH--------NIFRIGTMLQNLNFW 124
                +DA T  +L   L  RRVLKP G L V                 I T  +++ F+
Sbjct: 143 GAPKWHDAVTDLYLRAGLEARRVLKPGGKLIVKTQDEVSANKQRLTHVEIITGYEDMGFY 202

Query: 125 ILNDIVWRKSNPMPNFR-----GRRFQNAHETLIWASPSPKAKGYTFNY 168
             +  V  +SN     R       R  +++  +     S   +  +  +
Sbjct: 203 CKDLFVLVRSNAPAVSRLLEQVHARKNHSYFLVFELWKSRAKRPRSVRW 251


>gi|51894217|ref|YP_076908.1| hypothetical protein STH3082 [Symbiobacterium thermophilum IAM
           14863]
 gi|51857906|dbj|BAD42064.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 206

 Score = 42.7 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 6/104 (5%)

Query: 223 PGDIILDPFFGSGTSGAVAKKL---RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
           P D +LD   G G  G VA +L      +  +E+ +   ++A + + +   + N E+ V 
Sbjct: 57  PADTVLDLGCGYGPIGIVAARLAPQGFIY-MVEINERAAELARRNLEA-NAIANAEVRVG 114

Query: 280 TGKRTEPRVAFNLLVERGLIQPGQ-ILTNAQGNISATVCADGTL 322
            G      +AF+ +V    I+ G+  +        A +   G+L
Sbjct: 115 DGLEPVAGIAFDAVVTNPPIRAGKATVYRLLDEAHAALKPGGSL 158


>gi|307261171|ref|ZP_07542846.1| DNA methylase N-4/N-6 domain protein [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306868902|gb|EFN00704.1| DNA methylase N-4/N-6 domain protein [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 530

 Score = 42.7 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 45/141 (31%), Gaps = 17/141 (12%)

Query: 23  IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +I  ++   L  L     + V  I+ DPPYN   +  +Y+  +                 
Sbjct: 402 LIHSDNFQALNLLQERYKEQVKCIYIDPPYNTNASEIIYKNGYK--------------HS 447

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
           ++ +     +   R +L  +G + V         +  + + +             +    
Sbjct: 448 SWCSLLENRMTISRNLLSNDGLISVAIDGLEFSNLEMLTKEVFGVDNFITSIAIQHNPKG 507

Query: 140 FRGRRFQNAHETLIWASPSPK 160
                F ++HE +I AS    
Sbjct: 508 REKEFFADSHEYMIIASKQKM 528


>gi|289547839|ref|YP_003472827.1| ribosomal L11 methyltransferase [Thermocrinis albus DSM 14484]
 gi|289181456|gb|ADC88700.1| ribosomal L11 methyltransferase [Thermocrinis albus DSM 14484]
          Length = 239

 Score = 42.7 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G  LHPT K   +  R++     PG   LD   GSG       KL  R  + I++ +  +
Sbjct: 89  GTGLHPTTK---VCLRLIEKYFLPGWTALDVGCGSGILSIALAKLGAREVLAIDIDERAV 145

Query: 259 DIATK 263
           +   +
Sbjct: 146 EETKE 150


>gi|238917691|ref|YP_002931208.1| hypothetical protein EUBELI_01771 [Eubacterium eligens ATCC 27750]
 gi|238873051|gb|ACR72761.1| Hypothetical protein EUBELI_01771 [Eubacterium eligens ATCC 27750]
          Length = 182

 Score = 42.7 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
            GSGT+   AK L R  +G+++    + I+   + 
Sbjct: 1   MGSGTTLVEAKLLNRHAVGVDINPQSVSISETNLQ 35



 Score = 40.0 bits (92), Expect = 0.70,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 48/152 (31%), Gaps = 28/152 (18%)

Query: 22  KII--KGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           KI    GN+   L  +    +D I   PPY N+    +    D SL++            
Sbjct: 43  KIFTRNGNATD-LHFIKDSRIDFICTHPPYANIIKYSKGIEGDISLLNV----------- 90

Query: 79  EAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNI-------FRIGTMLQNLNFWILNDIV 130
           E +    +       RVLK       +IG            FR+        F     I+
Sbjct: 91  EKFLTEMQKVAEESYRVLKKGKMCAVMIGDLRKYGKVIPLGFRMMECFLQAGFANKEIII 150

Query: 131 WRKSNPMP-NFRGRRFQN----AHETLIWASP 157
             + N    +F  +R  N    AHE +     
Sbjct: 151 KEQHNCRSTDFWEKRNNNFLLLAHEYIFVFQK 182


>gi|187925400|ref|YP_001897042.1| ribosomal protein L11 methyltransferase [Burkholderia phytofirmans
           PsJN]
 gi|226710061|sp|B2SYT3|PRMA_BURPP RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|187716594|gb|ACD17818.1| ribosomal protein L11 methyltransferase [Burkholderia phytofirmans
           PsJN]
          Length = 300

 Score = 42.7 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYI 258
           G   HPT +   L    L  S +P   +LD   GSG    +AKK   +   GI++    +
Sbjct: 145 GTGSHPTTR---LCMEWLEQSVQPEQSVLDYGCGSGILAILAKKCGANPVYGIDIDPQAV 201

Query: 259 DIAT 262
           + A 
Sbjct: 202 ESAR 205


>gi|295697399|ref|YP_003590637.1| protein of unknown function DUF1156 [Bacillus tusciae DSM 2912]
 gi|295413001|gb|ADG07493.1| protein of unknown function DUF1156 [Bacillus tusciae DSM 2912]
          Length = 1074

 Score = 42.7 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 47/152 (30%), Gaps = 28/152 (18%)

Query: 34  KLPAKSVDLIFADPPY--NLQL--------------------NGQLYRPDHSLVDAVTDS 71
           +L  +SVDL+  DPPY  N+Q                          R  +   +AV + 
Sbjct: 661 ELSDRSVDLVCMDPPYYNNVQYAELSDYFYVWQRRTLQDLYPEIFRRRLTNKTDEAVANP 720

Query: 72  WDKFSSFE---AYDAFTRAWLLACRRVLKPNGT---LWVIGSYHNIFRIGTMLQNLNFWI 125
               S  E   AY+         CRRVL+ +G    ++          +   L    + I
Sbjct: 721 ARDGSVAEAKRAYERSMAEVFAECRRVLRDDGIMTLMFTHRDQQAWEVLTRSLIETGWTI 780

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
            + +     +     +  +   A    +    
Sbjct: 781 TSSLPVESESSESTHQKDKAAAASSIFLTCRK 812


>gi|166032268|ref|ZP_02235097.1| hypothetical protein DORFOR_01971 [Dorea formicigenerans ATCC
           27755]
 gi|166027991|gb|EDR46748.1| hypothetical protein DORFOR_01971 [Dorea formicigenerans ATCC
           27755]
          Length = 182

 Score = 42.7 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
            GSGT+   AK L R  +G+++    + I+   + 
Sbjct: 1   MGSGTTLVEAKLLNRHAVGVDINPQSVSISETNLQ 35


>gi|254431600|ref|ZP_05045303.1| putative methyltransferase [Cyanobium sp. PCC 7001]
 gi|197626053|gb|EDY38612.1| putative methyltransferase [Cyanobium sp. PCC 7001]
          Length = 197

 Score = 42.7 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 5/101 (4%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSF 248
           SG  +L++  G++  PT     L    L++    G   LD F GSG     A +   R  
Sbjct: 6   SGGRKLQSPPGDRARPTASRVRLAVMNLLARELRGAAWLDLFSGSGVMACEALQRGARRV 65

Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
           + +E       +A   +  VQ             R  P+V 
Sbjct: 66  VAVEQDPRIAAVARHNLHLVQTG----EANRNDGRPAPQVE 102


>gi|319790156|ref|YP_004151789.1| methyltransferase [Thermovibrio ammonificans HB-1]
 gi|317114658|gb|ADU97148.1| methyltransferase [Thermovibrio ammonificans HB-1]
          Length = 191

 Score = 42.7 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 22  KIIKGNSISVLEKLP--AKSVDLIFADPPYNLQL 53
           +II G+    L++L    +  D I+ADPPY    
Sbjct: 99  EIICGDYTEALKRLAKRGEKFDFIYADPPYEKGY 132


>gi|224826229|ref|ZP_03699331.1| ribosomal protein L11 methyltransferase [Lutiella nitroferrum 2002]
 gi|224601330|gb|EEG07511.1| ribosomal protein L11 methyltransferase [Lutiella nitroferrum 2002]
          Length = 298

 Score = 42.7 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 14/131 (10%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  + L ++ K G+ +LD   GSG     A KL   S +GI++    +
Sbjct: 143 GTGSHPTTR---LCLQWLDANIKGGESVLDYGCGSGILAIAALKLGAASAVGIDIDPQAV 199

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ-PGQILTNAQGNISATVC 317
             +    A  Q +    L   T       V  N+L     ++  G++L       S  V 
Sbjct: 200 RASQDNAAQNQVVARFYLPDATPPAQYDVVLANIL--ANPLRLLGELL-------SGHVR 250

Query: 318 ADGTLISGTEL 328
           A G ++    L
Sbjct: 251 AGGKIVLSGIL 261


>gi|170076656|ref|YP_001733294.1| methyltransferase, putative [Synechococcus sp. PCC 7002]
 gi|169884325|gb|ACA98038.1| methyltransferase, putative [Synechococcus sp. PCC 7002]
          Length = 179

 Score = 42.7 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 20/28 (71%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY 49
           +I+KG+ +  LE L  ++ DLI+ DPPY
Sbjct: 91  QILKGDLLKRLENLGGETFDLIYFDPPY 118


>gi|92114407|ref|YP_574335.1| 50S ribosomal protein L11P methyltransferase [Chromohalobacter
           salexigens DSM 3043]
 gi|122419625|sp|Q1QV72|PRMA_CHRSD RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|91797497|gb|ABE59636.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [Chromohalobacter salexigens DSM 3043]
          Length = 299

 Score = 42.7 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT    AL    L         +LD   GSG     A KL  R   G ++    +
Sbjct: 142 GTGTHPTT---ALCLAWLDGLDLDASRVLDFGCGSGILAIAALKLGARHATGTDIDPQAL 198

Query: 259 DIATK 263
             +  
Sbjct: 199 QASRD 203


>gi|326566921|gb|EGE17060.1| type III restriction-modification system restriction endonuclease
           [Moraxella catarrhalis 103P14B1]
          Length = 236

 Score = 42.3 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 20/88 (22%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGI--- 251
           E      KP  L+  +         IILD F GS T+     +L       R FI +   
Sbjct: 7   ENYFDFSKPLDLIKILAKLLNGDNSIILDFFAGSATTAHAVMQLNTEDNGNRQFIMVQLP 66

Query: 252 ----EMKQDYI-------DIATKRIASV 268
               E  + Y        +I+ +RI   
Sbjct: 67  ELTDEKSEAYKAGFKTISEISKERIRRA 94


>gi|150399897|ref|YP_001323664.1| putative RNA methylase [Methanococcus vannielii SB]
 gi|150012600|gb|ABR55052.1| putative RNA methylase [Methanococcus vannielii SB]
          Length = 364

 Score = 42.3 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 203 LHPTQKPEALLSRILVSST--KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
            HP      L +R +V+ +     DI+LDPF G+G     A  +  + IG ++ +  ++ 
Sbjct: 198 FHPGCIMPKL-ARCMVNLSRINENDILLDPFCGTGGFLIEAGLIGCNVIGSDIDEQMVNG 256

Query: 261 AT 262
           A 
Sbjct: 257 AI 258



 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 5   NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ 56
           N+  +++   SI +W  K    N +  L+ L  + +D +  DPPY +  + +
Sbjct: 262 NTYDLSKKTISIKKWNAK----NILDYLKSLNIEKIDAVVTDPPYGISTSKK 309


>gi|255316512|ref|ZP_05358095.1| restriction modification system DNA specificity subunit
           [Clostridium difficile QCD-76w55]
          Length = 282

 Score = 42.3 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 55/174 (31%), Gaps = 27/174 (15%)

Query: 14  NSIFEWKDKI-------IKGNSISVLEKLPAKSVDLIFADPP------------------ 48
           N+   + +KI       I G+ +  L++   K  DL+  +PP                  
Sbjct: 104 NNELHYLNKICYPNVNTINGDCLEYLKEFEGK-FDLVIGNPPFGKSCKRDGFEFGKSSLE 162

Query: 49  -YNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
            Y  +L+ +  +   SL+  + DS      +     FT       + +  P  T +  G+
Sbjct: 163 SYFFELSLRALKEGGSLIMVLPDSILSSKKYFNLRKFTVDNFRIIQSISLPTTTFYFYGT 222

Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
                 +    ++ N    +  +        + +G + +N   +          
Sbjct: 223 SVKTSILHLKKKDCNNKDYSIFMGIVDKIGWDSKGNKNENELISAYHEFKEFCK 276


>gi|325960084|ref|YP_004291550.1| hypothetical protein Metbo_2365 [Methanobacterium sp. AL-21]
 gi|325331516|gb|ADZ10578.1| Conserved hypothetical protein CHP01177 [Methanobacterium sp.
           AL-21]
          Length = 351

 Score = 42.3 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 5/84 (5%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEAL---LSRILVSST--KPGDIILDPFFGSGTSGAVAK 242
           I    ++  N       P   P ++   L+R +V+ T  K  D +LDPF G+G     A 
Sbjct: 153 IVKIDKKHFNNFKPHKRPFFYPGSMSPKLARCMVNLTEIKEDDTVLDPFCGTGGILIEAG 212

Query: 243 KLRRSFIGIEMKQDYIDIATKRIA 266
            L    IG ++    +      + 
Sbjct: 213 ILGAKLIGSDLDYKMVQGTKSNLE 236


>gi|157146361|ref|YP_001453680.1| 23S rRNA m(2)G2445 methyltransferase [Citrobacter koseri ATCC
           BAA-895]
 gi|238686820|sp|A8AID1|RLML_CITK8 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|157083566|gb|ABV13244.1| hypothetical protein CKO_02120 [Citrobacter koseri ATCC BAA-895]
          Length = 702

 Score = 42.3 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 42/129 (32%), Gaps = 22/129 (17%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + +  L +   +  DLIF DPP         +     + ++     D       
Sbjct: 591 HRLIQADCLGWLRE-ANEQFDLIFIDPP--------TFSNSKRMDESFDVQRDHL----- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                   +   +R+L+  GT+    +          L  L   +    + +K+      
Sbjct: 637 ------VLMKDLKRLLRKGGTIMFSNNKRGFRMDLDGLAALG--LKAQEITQKTLSQDFA 688

Query: 141 RGRRFQNAH 149
           R R+  N  
Sbjct: 689 RNRQIHNCW 697


>gi|18976772|ref|NP_578129.1| hypothetical protein PF0400 [Pyrococcus furiosus DSM 3638]
 gi|18892363|gb|AAL80524.1| hypothetical protein PF0400 [Pyrococcus furiosus DSM 3638]
          Length = 329

 Score = 42.3 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 7/135 (5%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWL-IPICSGSERLRNKDGEKLHPTQKPEALLSRI-- 216
            +KG+  N  +             WL + I     +          P  +P AL  RI  
Sbjct: 113 YSKGFKVNLSSPTTVIRIYCGEKLWLGVRIREFKGKEFENRKADRRPFSRPIALPPRIAR 172

Query: 217 -LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
            +V+ T+    +LDPF G+G     A  +     G+++++D ++ A     +++  G  +
Sbjct: 173 AMVNLTRATRELLDPFMGTGGMLIEAGLMGLKVYGLDIREDMVEGAK---INLEYYGIKD 229

Query: 276 LTVLTGKRTEPRVAF 290
             V  G  T  + AF
Sbjct: 230 YVVKVGDATRIKEAF 244


>gi|82595697|ref|XP_725955.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23481160|gb|EAA17520.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 519

 Score = 42.3 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 43/134 (32%), Gaps = 15/134 (11%)

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
             +    I  RK NP+  +   + +N H    +            N D  +    +   R
Sbjct: 173 KIYFGKCIALRKFNPLLIY--NKDKNEHACSSYKKECDNC-----NNDVNEKKKIENNNR 225

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEAL-LSRILVSSTKPGDIILDPFFGSGTSGAV 240
             W         R+         PT     L      ++  K GDI+LDPF GSG     
Sbjct: 226 KTWWAHYALNKRRILG-------PTTTDNELAFIMCNIAKIKKGDIVLDPFVGSGGLLIA 278

Query: 241 AKKLRRSFIGIEMK 254
           +       IG ++ 
Sbjct: 279 SSVFNAICIGNDID 292


>gi|289550651|ref|YP_003471555.1| Ribosomal protein L11 methyltransferase [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180183|gb|ADC87428.1| Ribosomal protein L11 methyltransferase [Staphylococcus lugdunensis
           HKU09-01]
          Length = 312

 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 61/196 (31%), Gaps = 22/196 (11%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNK------DGEKLHPTQKPEALLSRILVSS 220
           NY     A++   +   W       +E L  +       G   HPT    ++    +   
Sbjct: 114 NYFHPFRASKRFTIVPSWETYTKDSNEELCIELDPGMAFGTGDHPTT---SMCLHAIEKY 170

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
                 ++D   GSG        L  R    I++    I +A +          IE    
Sbjct: 171 VSSDKNVIDVGTGSGILSIACHLLGVRHIKAIDIDDMAIKVAIENFKKNHCEAVIEANTG 230

Query: 280 TGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIH------- 332
              + E +     +V   ++    I+     +   T+  DG  I+   +   H       
Sbjct: 231 NLLKDETK--KYDVVIANIL--AHIIDEMIEDAYNTLNEDGYFITSGIITEKHLEIEAHM 286

Query: 333 -RVGAKVSGSETCNGW 347
            +VG  +   E  NGW
Sbjct: 287 KQVGFDIISIEQNNGW 302


>gi|154251631|ref|YP_001412455.1| hypothetical protein Plav_1177 [Parvibaculum lavamentivorans DS-1]
 gi|154253989|ref|YP_001414813.1| hypothetical protein Plav_3558 [Parvibaculum lavamentivorans DS-1]
 gi|154155581|gb|ABS62798.1| conserved hypothetical protein [Parvibaculum lavamentivorans DS-1]
 gi|154157939|gb|ABS65156.1| conserved hypothetical protein [Parvibaculum lavamentivorans DS-1]
          Length = 920

 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 23/37 (62%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
           T+ P   +   ++  T+PGD++LD F GSG +G  A+
Sbjct: 119 TKVPHLAIVPSILHYTQPGDVVLDGFAGSGMTGVAAQ 155



 Score = 39.6 bits (91), Expect = 0.89,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 35/103 (33%), Gaps = 13/103 (12%)

Query: 34  KLP--AKSVDLIFADPPYNLQ-LNGQLYRPDHSLVDAVTD-------SWDKFSSFEAYDA 83
           KLP   +S+D IF DPP+        L     S    +TD          +      Y  
Sbjct: 484 KLPLNNESIDYIFTDPPFGENIYYADLNILVESWHRVLTDASPEAIVDRVREKGIPEYQH 543

Query: 84  FTRAWLLACRRVLKPNGTL-WVIGSYHN--IFRIGTMLQNLNF 123
             RA      RVLKP   +  V  +        I   LQ + F
Sbjct: 544 LMRACFSEYHRVLKPGRWMTVVFSNSRASVWNAIQVALQQVGF 586


>gi|90021397|ref|YP_527224.1| 23S rRNA m(2)G2445 methyltransferase [Saccharophagus degradans
           2-40]
 gi|123396190|sp|Q21JW7|RLML_SACD2 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|89950997|gb|ABD81012.1| putative RNA methylase [Saccharophagus degradans 2-40]
          Length = 752

 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 20/102 (19%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N++   + ++++ +    L K      DLI  DPP         +     + D + 
Sbjct: 633 NFRLNNVHLARHRLVRADCFDWLNKCREG-FDLIMLDPP--------TFSNSKKMSDVLD 683

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
              D+              +  C  +L P GTL+   ++   
Sbjct: 684 IQKDQVR-----------LISRCMDILNPGGTLYFSTNFRQF 714


>gi|240102214|ref|YP_002958522.1| Site-specific DNA-methyltransferase (cytosine-N(4)-specific)
           [Thermococcus gammatolerans EJ3]
 gi|239909767|gb|ACS32658.1| Site-specific DNA-methyltransferase (cytosine-N(4)-specific)
           [Thermococcus gammatolerans EJ3]
          Length = 465

 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 204 HPTQKPEALLSRILVSS-TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            P     +L+   +        D ILDPF GSGT    AK+L  + +G+E       IA 
Sbjct: 60  FPAGFSASLVRNSINIFRITSKDTILDPFTGSGTVNVEAKRLGITSVGVEAHPLVAKIAQ 119



 Score = 38.0 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG 55
           +I   +S  + + +   S+D IF  PPY    + 
Sbjct: 260 EIYNFDSRFLAKIINENSIDFIFTSPPYLNNYDY 293


>gi|213423692|ref|ZP_03356672.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 316

 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 20/102 (19%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + +  L +   +  DLIF DPP         +     + ++     D       
Sbjct: 205 HRLIQADCLGWLRE-ANEQFDLIFIDPP--------TFSNSKRMEESFDVQRDHV----- 250

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                 A +   +R+L+  GT+    +          L  L 
Sbjct: 251 ------ALMKDLKRLLRKGGTIMFSNNKRGFRMDLEGLAELG 286


>gi|115955266|ref|XP_001190641.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 540

 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 47/126 (37%), Gaps = 9/126 (7%)

Query: 156 SPSPKAKGYTF-NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK-LHP--TQKPEA 211
              P    Y F +Y        D   R      I  G +RL ++   K  H       +A
Sbjct: 189 MRDPDQVFYIFEDYGVQPNQAPDKPHRIFVGRWISDGQKRLAHRYSVKTRHFIGNTSMDA 248

Query: 212 LLSRIL--VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           LLS ++   +  + GD++LDPF G+G+    A        G ++     +I   R  S +
Sbjct: 249 LLSLVMTNQAGVREGDLVLDPFVGTGSLLVAAAHFGGYVSGCDIN---YNIIHGRGKSSR 305

Query: 270 PLGNIE 275
                E
Sbjct: 306 AQPKTE 311


>gi|30263365|ref|NP_845742.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis
           str. Ames]
 gi|47528745|ref|YP_020094.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49186212|ref|YP_029464.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis
           str. Sterne]
 gi|165868329|ref|ZP_02212989.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis
           str. A0488]
 gi|167631950|ref|ZP_02390277.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis
           str. A0442]
 gi|167637453|ref|ZP_02395733.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis
           str. A0193]
 gi|170684969|ref|ZP_02876194.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis
           str. A0465]
 gi|170705206|ref|ZP_02895671.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis
           str. A0389]
 gi|177650190|ref|ZP_02933191.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis
           str. A0174]
 gi|190564577|ref|ZP_03017498.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis
           Tsiankovskii-I]
 gi|227813763|ref|YP_002813772.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis
           str. CDC 684]
 gi|228916021|ref|ZP_04079594.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229604349|ref|YP_002867621.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis
           str. A0248]
 gi|254685978|ref|ZP_05149837.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis
           str. CNEVA-9066]
 gi|254723381|ref|ZP_05185169.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis
           str. A1055]
 gi|254738450|ref|ZP_05196153.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis
           str. Western North America USA6153]
 gi|254742385|ref|ZP_05200070.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis
           str. Kruger B]
 gi|254752766|ref|ZP_05204802.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis
           str. Vollum]
 gi|254761279|ref|ZP_05213303.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis
           str. Australia 94]
 gi|30257999|gb|AAP27228.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis
           str. Ames]
 gi|47503893|gb|AAT32569.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49180139|gb|AAT55515.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis
           str. Sterne]
 gi|164715055|gb|EDR20572.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis
           str. A0488]
 gi|167514960|gb|EDR90326.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis
           str. A0193]
 gi|167532248|gb|EDR94884.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis
           str. A0442]
 gi|170130061|gb|EDS98923.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis
           str. A0389]
 gi|170671229|gb|EDT21967.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis
           str. A0465]
 gi|172084142|gb|EDT69201.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis
           str. A0174]
 gi|190563894|gb|EDV17858.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis
           Tsiankovskii-I]
 gi|227003912|gb|ACP13655.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis
           str. CDC 684]
 gi|228843616|gb|EEM88692.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229268757|gb|ACQ50394.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis
           str. A0248]
          Length = 390

 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 79/214 (36%), Gaps = 12/214 (5%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
            + S    +K    +  A      +   +  WL    + S      + + L   Q    +
Sbjct: 96  YFKSKWNFSKQKNKDDIAHHYDIGNDFYKL-WLDETMTYSCAYFQNEQDSLTTAQ-HNKV 153

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
              +   + + GD +LD   G G    A AK+     +G+ + ++    A++RI   + L
Sbjct: 154 NHILKKLNLQKGDTLLDIGCGWGELITAAAKQYGVKAMGVTLSEEQYAKASERIKQ-EGL 212

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLI-QPGQILTNAQGNISATVCADGTLISGTELGS 330
            ++    L   R      F+ +V  G+I   G+           T+  DG +        
Sbjct: 213 TDLVEVSLLDYRDIKNQKFDKIVSVGMIEHVGKDNITQYFETVNTLLNDGGISL------ 266

Query: 331 IHRVGAKVSGSETCNGWNFWYFEKLGELHSINTL 364
           +H + +  +G  T NGW   Y    G + ++N L
Sbjct: 267 LHCITSPANGGAT-NGWIEKYIFPGGYVPAVNEL 299


>gi|15607057|ref|NP_214439.1| ribosomal protein L11 methyltransferase [Aquifex aeolicus VF5]
 gi|38605117|sp|O67870|PRMA_AQUAE RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|2984305|gb|AAC07828.1| ribosomal protein L11 methyltransferase [Aquifex aeolicus VF5]
          Length = 245

 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 17/134 (12%)

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
           ED  +   W  P+     +     G  LHPT     L  + L    K G  +LD   GSG
Sbjct: 73  EDFVIIPSWKKPVIV---KPGLAFGTGLHPTT---QLCIKALKKYLKEGMTVLDVGTGSG 126

Query: 236 TSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR---VAFN 291
               V+  L  +  +GI++ +  ++         +    +    +   R EP+    +F+
Sbjct: 127 ILAIVSALLGAKRVVGIDIDEKAVN-------ECRENAELNKVKVECFRAEPKDVNESFD 179

Query: 292 LLVERGLIQPGQIL 305
           L+V    I   + +
Sbjct: 180 LVVANLEIHIFERV 193


>gi|332162178|ref|YP_004298755.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318606231|emb|CBY27729.1| 23s rRNA (guanine-N-2-)-methyltransferase rlmL [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325666408|gb|ADZ43052.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330860157|emb|CBX70478.1| ribosomal RNA large subunit methyltransferase L [Yersinia
           enterocolitica W22703]
          Length = 706

 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 40/145 (27%), Gaps = 24/145 (16%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++I+ + +S L     +  D+IF DPP         +     +     
Sbjct: 580 NLRANGLTGQQHRLIQADCLSWLSN-TDEQFDVIFIDPP--------TFSNSKRMETTFD 630

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI----FRIGTMLQNLNFWI 125
              D               +   +R+L+  GT+    +          I  +        
Sbjct: 631 VQRDHL-----------VLMKELKRLLRRKGTIMFSNNKRGFQMDLDGIKALGLEAKEIT 679

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHE 150
                   +            ++HE
Sbjct: 680 AQTQSEDFARNRQIHNCWLVTHSHE 704


>gi|255034728|ref|YP_003085349.1| adenine-specific DNA methylase [Dyadobacter fermentans DSM 18053]
 gi|254947484|gb|ACT92184.1| adenine-specific DNA methylase [Dyadobacter fermentans DSM 18053]
          Length = 412

 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 3/79 (3%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNS--ISVLEKL-PAKSVDLIFADPPYNLQLNGQLYRP 60
           +N   +++   S   + + +I G++    + +K+ P  SVD++   PPY        Y  
Sbjct: 199 RNRNGLSDFMESRANFAEPLITGDNSIFKIPKKIIPEGSVDIVLTSPPYGDSSTTVAYGQ 258

Query: 61  DHSLVDAVTDSWDKFSSFE 79
             +L +      D   S +
Sbjct: 259 FSALANQWLGLRDHGRSLD 277



 Score = 38.4 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 6/77 (7%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +P +    + S +L    K    + DP+ G+GT+   A        G ++          
Sbjct: 20  YPAKMIPQIASALLDEYGKNALSLFDPYCGTGTTLVEAATRGIKSYGFDLNP------LA 73

Query: 264 RIASVQPLGNIELTVLT 280
           R+ +      IE+  L 
Sbjct: 74  RLIANVKTTQIEIQTLD 90


>gi|238763367|ref|ZP_04624331.1| hypothetical protein ykris0001_3230 [Yersinia kristensenii ATCC
           33638]
 gi|238698466|gb|EEP91219.1| hypothetical protein ykris0001_3230 [Yersinia kristensenii ATCC
           33638]
          Length = 706

 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 40/145 (27%), Gaps = 24/145 (16%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++I+ + +S L     +  D+IF DPP         +     +     
Sbjct: 580 NLRANGLTGQQHRLIQADCLSWLSN-TDEQFDVIFIDPP--------TFSNSKRMETTFD 630

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI----FRIGTMLQNLNFWI 125
              D               +   +R+L+  GT+    +          I  +        
Sbjct: 631 VQRDHL-----------VLMKELKRLLRRKGTIMFSNNKRGFQMDLDGIKALGLEAKEIT 679

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHE 150
                   +            ++HE
Sbjct: 680 AQTQSEDFARNRQIHNCWLVTHSHE 704


>gi|167625805|ref|YP_001676099.1| ribosomal protein L11 methyltransferase [Shewanella halifaxensis
           HAW-EB4]
 gi|189037703|sp|B0TJ37|PRMA_SHEHH RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|167355827|gb|ABZ78440.1| ribosomal protein L11 methyltransferase [Shewanella halifaxensis
           HAW-EB4]
          Length = 293

 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 36/108 (33%), Gaps = 7/108 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  +K  +      S   IP  +    + +     G   HPT    AL    
Sbjct: 95  WEREWMDNFHPIKFGDRLWICPSWREIPDPTAVNVILDPGLAFGTGTHPTT---ALCLEW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           L         ++D   GSG     A KL      GI++    I+ +  
Sbjct: 152 LDGLDYSNKDVIDFGCGSGILAVAALKLGAERVTGIDIDYQAIEASKA 199


>gi|123441881|ref|YP_001005864.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|229560197|sp|A1JMQ6|RLML_YERE8 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|122088842|emb|CAL11648.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 706

 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 40/145 (27%), Gaps = 24/145 (16%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++I+ + +S L     +  D+IF DPP         +     +     
Sbjct: 580 NLRANGLTGQQHRLIQADCLSWLSN-TDEQFDVIFIDPP--------TFSNSKRMETTFD 630

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI----FRIGTMLQNLNFWI 125
              D               +   +R+L+  GT+    +          I  +        
Sbjct: 631 VQRDHL-----------VLMKELKRLLRRKGTIMFSNNKRGFQMDLDGIKALGLEAKEIT 679

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHE 150
                   +            ++HE
Sbjct: 680 AQTQSEDFARNRQIHNCWLVTHSHE 704


>gi|20807438|ref|NP_622609.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter
           tengcongensis MB4]
 gi|38605369|sp|Q8RB66|PRMA_THETN RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|20515962|gb|AAM24213.1| Ribosomal protein L11 methylase [Thermoanaerobacter tengcongensis
           MB4]
          Length = 309

 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 53/139 (38%), Gaps = 5/139 (3%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSSTKPG 224
            Y       + + +R  W        E + + D      T   E   +  + L    KPG
Sbjct: 115 KYYKPLKVGKRIVVRPLWEEYSPKEGEIVIDLDPGMAFGTGTHETTKMCLQFLEDIVKPG 174

Query: 225 DIILDPFFGSGTSGAVAKKLRRSF-IGIEMKQDYIDIATK--RIASVQPLGNIELTVLTG 281
            I+ D   GSG     A KL  S+  G ++ +  + IA +  ++  ++ +   +  +L  
Sbjct: 175 AIVFDVGCGSGILSIAASKLGASYVYGADVDEMAVKIARENVKLNGLENVEIFQSDLLKN 234

Query: 282 KRTEPRVAFNLLVERGLIQ 300
            R +  V    ++   +I+
Sbjct: 235 FRGKADVIVANIIADAIIR 253


>gi|116493440|ref|YP_805175.1| cyclopropane-fatty-acyl-phospholipid synthase [Pediococcus
           pentosaceus ATCC 25745]
 gi|116103590|gb|ABJ68733.1| cyclopropane-fatty-acyl-phospholipid synthase [Pediococcus
           pentosaceus ATCC 25745]
          Length = 391

 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 48/289 (16%), Positives = 92/289 (31%), Gaps = 32/289 (11%)

Query: 79  EAYDAFTRAWLLACRRVLKPNGT--LWVIGS------YHNIFRIGTMLQNLNFWILNDIV 130
           + Y +F +       RV   +G+  ++  G       ++    +  +L+N     L +  
Sbjct: 5   QFYKSFLKRTFNIPVRVNYWDGSSAVYGTGDPQVTITFNKAIPVKAILKNA-SIALGEAY 63

Query: 131 WRKSNPMPNFRGRRFQNAHETL-IWASPSPKAKGYTFNYDALKAANEDVQMRSD------ 183
              +  +     +   +A+E    +                 K + EDVQ   D      
Sbjct: 64  MDGTITVEGSLQQLITSAYENADSFFHNKKFIHFLPKQGHNEKESMEDVQNHYDIGNDFY 123

Query: 184 --WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL-DPFFGSGTSGA- 239
             WL P  + S      D + L   Q  +  +  I+          L D   G GT    
Sbjct: 124 RLWLDPTLTYSCAYFESDQDTLEQAQMNK--VRHIIRKLHPQRGKTLLDIGCGWGTLMLT 181

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLI 299
            AK+     +G+ + ++  ++  +RI   + L  +    L   R      F+ +   G+ 
Sbjct: 182 AAKEFDLKVVGVTLSKEQYNLVNQRIKD-EGLEGVAEVRLQDYRELGDAKFDYITSVGMF 240

Query: 300 -QPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGW 347
              G+          A    +  +        IH +  +  G    NGW
Sbjct: 241 EHVGKENLGIYFENVAKYLKNDGVAL------IHGITRQQGG--ANNGW 281


>gi|89256596|ref|YP_513958.1| 23S rRNA m(2)G2445 methyltransferase [Francisella tularensis subsp.
           holarctica LVS]
 gi|115315025|ref|YP_763748.1| 23S rRNA m(2)G2445 methyltransferase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156502726|ref|YP_001428791.1| 23S rRNA m(2)G2445 methyltransferase [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167010623|ref|ZP_02275554.1| ribosomal L29e protein family, putative [Francisella tularensis
           subsp. holarctica FSC200]
 gi|254367914|ref|ZP_04983934.1| hypothetical protein FTHG_01213 [Francisella tularensis subsp.
           holarctica 257]
 gi|122324964|sp|Q0BLC3|RLML_FRATO RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|122500563|sp|Q2A2U4|RLML_FRATH RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|229560156|sp|A7NCY2|RLML_FRATF RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|89144427|emb|CAJ79726.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129924|gb|ABI83111.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253724|gb|EBA52818.1| hypothetical protein FTHG_01213 [Francisella tularensis subsp.
           holarctica 257]
 gi|156253329|gb|ABU61835.1| RNA methylase family protein [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 717

 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 44/140 (31%), Gaps = 20/140 (14%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N+I   K   I+ + IS L+    K  D+IF DPP                  + +
Sbjct: 597 NFTLNNIDAKKHSFIQADCISWLKTNKDK-FDVIFLDPP----------------TFSNS 639

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
              D     +         +      LK +G L+   +Y        +L+  N   ++ I
Sbjct: 640 KRMDDILDIQRDHELL---INLAMDSLKKDGILYFSNNYRRFKMSPQILEKFNCENIDKI 696

Query: 130 VWRKSNPMPNFRGRRFQNAH 149
              +           ++  +
Sbjct: 697 CLSRDFLSNKNIHNCWEIKY 716


>gi|56708023|ref|YP_169919.1| 23S rRNA m(2)G2445 methyltransferase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670494|ref|YP_667051.1| 23S rRNA m(2)G2445 methyltransferase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224457106|ref|ZP_03665579.1| 23S rRNA m(2)G2445 methyltransferase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370506|ref|ZP_04986511.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874823|ref|ZP_05247533.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|81597544|sp|Q5NGC3|RLML_FRATT RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|122970958|sp|Q14HS5|RLML_FRAT1 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|56604515|emb|CAG45556.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320827|emb|CAL08939.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568749|gb|EDN34403.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840822|gb|EET19258.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159213|gb|ADA78604.1| 23S rRNA m(2)G2445 methyltransferase [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 717

 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 44/140 (31%), Gaps = 20/140 (14%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N+I   K   I+ + IS L+    K  D+IF DPP                  + +
Sbjct: 597 NFTLNNIDAKKHSFIQADCISWLKTNKDK-FDVIFLDPP----------------TFSNS 639

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
              D     +         +      LK +G L+   +Y        +L+  N   ++ I
Sbjct: 640 KRMDDILDIQRDHELL---INLAMDSLKKDGILYFSNNYRRFKMSPQILEKFNCENIDKI 696

Query: 130 VWRKSNPMPNFRGRRFQNAH 149
              +           ++  +
Sbjct: 697 CLSRDFLSNKNIHNCWEIKY 716


>gi|254369417|ref|ZP_04985429.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122367|gb|EDO66507.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 717

 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 44/140 (31%), Gaps = 20/140 (14%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N+I   K   I+ + IS L+    K  D+IF DPP                  + +
Sbjct: 597 NFTLNNIDAKKHSFIQADCISWLKTNKDK-FDVIFLDPP----------------TFSNS 639

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
              D     +         +      LK +G L+   +Y        +L+  N   ++ I
Sbjct: 640 KRMDDILDIQRDHELL---INLAMDSLKKDGILYFSNNYRRFKMSPQILEKFNCENIDKI 696

Query: 130 VWRKSNPMPNFRGRRFQNAH 149
              +           ++  +
Sbjct: 697 CLSRDFLSNKNIHNCWEIKY 716


>gi|134301838|ref|YP_001121806.1| 23S rRNA m(2)G2445 methyltransferase [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|229560159|sp|A4IXN4|RLML_FRATW RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|134049615|gb|ABO46686.1| Putative RNA methylase family [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 717

 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 44/140 (31%), Gaps = 20/140 (14%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N+I   K   I+ + IS L+    K  D+IF DPP                  + +
Sbjct: 597 NFTLNNIDAKKHSFIQADCISWLKTNKDK-FDVIFLDPP----------------TFSNS 639

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
              D     +         +      LK +G L+   +Y        +L+  N   ++ I
Sbjct: 640 KRMDDILDIQRDHELL---INLAMDSLKKDGILYFSNNYRRFKMSPQILEKFNCENIDKI 696

Query: 130 VWRKSNPMPNFRGRRFQNAH 149
              +           ++  +
Sbjct: 697 CLSRDFLSNKNIHNCWEIKY 716


>gi|85711852|ref|ZP_01042907.1| Ribosomal protein L11 methylase [Idiomarina baltica OS145]
 gi|85694249|gb|EAQ32192.1| Ribosomal protein L11 methylase [Idiomarina baltica OS145]
          Length = 293

 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 7/102 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
               +  N+  ++         S   IP       L +     G   HPT    A+    
Sbjct: 95  WELEWMDNFHPIQFGRRLWICPSWRDIPEPDAVNILLDPGMAFGTGTHPTT---AMCLEW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDY 257
           L +  K  + I+D   GSG  G  A KL     +GI++ +  
Sbjct: 152 LDAHVKGNEQIVDFGCGSGILGIAALKLGSAHALGIDIDKQA 193


>gi|24215368|ref|NP_712849.1| methyltransferase DNA modification enzyme [Leptospira interrogans
           serovar Lai str. 56601]
 gi|24196481|gb|AAN49867.1| methyltransferase DNA modification enzyme [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 383

 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 10/80 (12%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-------SWDKFSSFEAYDAF 84
           LE L   +VD++   PP+   L+   Y  D+ L     D           FS+  A+  F
Sbjct: 240 LESLQDGTVDIVITSPPF---LDKVNYEEDNWLRYWFLDIKLPDHKKPSIFSTLNAWTDF 296

Query: 85  TRAWLLACRRVLKPNGTLWV 104
               L    RVLK  G   +
Sbjct: 297 IHDTLKELSRVLKSEGICVM 316



 Score = 41.1 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 206 TQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
                 L +  L    +K   I+LDPF G GT+   A     S I  ++    + +A  R
Sbjct: 36  ASFKPELPAFFLDKYLSKHKGIVLDPFGGRGTTSIQANLDGHSAIHNDISPMSLFLAKSR 95

Query: 265 --IASVQPLGNI 274
             I S++ +  I
Sbjct: 96  QTIPSLESMEKI 107


>gi|300868548|ref|ZP_07113166.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300333461|emb|CBN58358.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 439

 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 212 LLSRILVSSTK-PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA---- 266
           L+  ++          ++DPF G GT+    +K     +GIE+      + +K +     
Sbjct: 62  LVRFLIKELQIARKHFVVDPFSGRGTTSIECQKQGIKALGIEINPLLQQVGSKSLRWNTD 121

Query: 267 SVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
           ++         V +       V+   +VE 
Sbjct: 122 NLHLFEKYLTEVDSLIEKFKEVSIEDVVES 151


>gi|168024739|ref|XP_001764893.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683929|gb|EDQ70335.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 300

 Score = 42.3 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYI 258
           G   HPT +   L  R L S  +PGD I+D   GSG     A K+     +G+++    I
Sbjct: 121 GTGEHPTTR---LCLRWLHSVVRPGDKIIDYGTGSGILSIAALKMGSVHAVGVDIDPVAI 177

Query: 259 DIAT 262
             A 
Sbjct: 178 SSAE 181


>gi|15789334|ref|NP_277101.1| modification methylase, putative [Deinococcus radiodurans R1]
          Length = 434

 Score = 42.3 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 4/35 (11%)

Query: 22  KIIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNG 55
           ++ +G   S +  +LP  SVDL+   PPY    + 
Sbjct: 234 QVYQG---SFMRSELPDSSVDLMVTSPPYLNNYHY 265



 Score = 41.9 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 25/57 (43%)

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278
            P  ++LDPF G GT+   A     S +  ++    + +   ++ ++Q +   E   
Sbjct: 56  NPEQVVLDPFGGVGTTPITAFLRGHSVVSYDINPFPLLVQRAKLRAIQDVTPAEFAQ 112


>gi|254253299|ref|ZP_04946617.1| Ribosomal protein L11 methylase [Burkholderia dolosa AUO158]
 gi|124895908|gb|EAY69788.1| Ribosomal protein L11 methylase [Burkholderia dolosa AUO158]
          Length = 300

 Score = 42.3 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYI 258
           G   HPT +   L    L  + KPG  +LD   GSG    +AKK      +GI++    +
Sbjct: 145 GTGSHPTTR---LCMEWLEQTVKPGQSVLDYGCGSGILAILAKKCGADPVVGIDIDPQAV 201

Query: 259 DIATK 263
           + A +
Sbjct: 202 ESARQ 206


>gi|317474029|ref|ZP_07933308.1| hypothetical protein HMPREF1016_00286 [Bacteroides eggerthii
           1_2_48FAA]
 gi|316909871|gb|EFV31546.1| hypothetical protein HMPREF1016_00286 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 441

 Score = 42.3 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 207 QKPEALLSRILVSSTKP--GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           Q    LL + ++   KP     ILDPF G GT+   +       IG ++    I  A  +
Sbjct: 63  QGYSELLVKHIIDEAKPLKEHYILDPFCGVGTTNLTSVNRGYKTIGFDVNPMAILTAKAK 122

Query: 265 IASVQP 270
                P
Sbjct: 123 THHYTP 128


>gi|187778858|ref|ZP_02995331.1| hypothetical protein CLOSPO_02453 [Clostridium sporogenes ATCC
           15579]
 gi|187772483|gb|EDU36285.1| hypothetical protein CLOSPO_02453 [Clostridium sporogenes ATCC
           15579]
          Length = 218

 Score = 42.3 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 6   SLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
            +A +  +   F+ K KII G+ + +L+ L  K  D+IF D
Sbjct: 94  EIARSNIEKHGFKDKIKIIHGDCLEILKDLDDKY-DMIFMD 133


>gi|163942068|ref|YP_001646952.1| ribosomal protein L11 methyltransferase [Bacillus
           weihenstephanensis KBAB4]
 gi|229135137|ref|ZP_04263938.1| Ribosomal protein L11 methyltransferase [Bacillus cereus
           BDRD-ST196]
 gi|163864265|gb|ABY45324.1| ribosomal protein L11 methyltransferase [Bacillus
           weihenstephanensis KBAB4]
 gi|228648314|gb|EEL04348.1| Ribosomal protein L11 methyltransferase [Bacillus cereus
           BDRD-ST196]
          Length = 312

 Score = 42.3 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 67/188 (35%), Gaps = 17/188 (9%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD-----GEKLHPTQKPEALLS 214
            A  +   Y  ++ ++    + +       S +E++   D     G   HPT     +  
Sbjct: 110 WATAWKKYYHPVQISDTFTIVPTWEEYTPSSPNEKIIELDPGMAFGTGTHPTTT---MCI 166

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATK--RIASVQPL 271
           R L  + +PGD ++D   GSG     A KL  + +   ++    ++ A    R+     +
Sbjct: 167 RALEKTVQPGDTVIDVGTGSGVLSIAAAKLGAASVQAYDLDPVAVESAEMNVRLNKTDDI 226

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSI 331
            N+    L      P      L+   L+    +L          V   G  I+   +G+ 
Sbjct: 227 VNVGQNSLLEGIEGPV----DLIVANLLAEIILLFPEDAARV--VKPGGLFITSGIIGAK 280

Query: 332 HRVGAKVS 339
            ++ +K  
Sbjct: 281 EKIISKAL 288


>gi|161503860|ref|YP_001570972.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|229560170|sp|A9MHU0|RLML_SALAR RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|160865207|gb|ABX21830.1| hypothetical protein SARI_01948 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 702

 Score = 42.3 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPP 48
            ++I+ + +  L +   +  DLIF DPP
Sbjct: 591 HRLIQADCLGWLRE-ANEQFDLIFIDPP 617


>gi|330829662|ref|YP_004392614.1| ribosomal RNA large subunit methyltransferase L [Aeromonas veronii
           B565]
 gi|328804798|gb|AEB49997.1| Ribosomal RNA large subunit methyltransferase L [Aeromonas veronii
           B565]
          Length = 719

 Score = 42.3 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
           N   NS+   + K ++ + +  L +   +  DLIF DPP
Sbjct: 591 NMRLNSLVGRQHKFVQADCLKWLSE-ADEQYDLIFIDPP 628


>gi|187931616|ref|YP_001891600.1| 23S rRNA m(2)G2445 methyltransferase [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|229560157|sp|B2SGG3|RLML_FRATM RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|187712525|gb|ACD30822.1| conserved hypothetical protein [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 717

 Score = 42.3 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 44/140 (31%), Gaps = 20/140 (14%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N+I   K   I+ + IS L+    K  D+IF DPP                  + +
Sbjct: 597 NFTLNNINAKKHSFIQADCISWLKTNKDK-FDVIFLDPP----------------TFSNS 639

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
              D     +         +      LK +G L+   +Y        +L+  N   ++ I
Sbjct: 640 KRMDDILDIQRDHELL---INLAMDSLKKDGILYFSNNYRRFKMSPQILEKFNCENIDKI 696

Query: 130 VWRKSNPMPNFRGRRFQNAH 149
              +           ++  +
Sbjct: 697 CLSRDFLSNKNIHNCWEIKY 716


>gi|168334727|ref|ZP_02692859.1| ribosomal protein L11 methyltransferase [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 312

 Score = 42.3 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 2/109 (1%)

Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLS 214
           P  K       Y       + + ++  WL    +G E +   D      +   E  ++  
Sbjct: 106 PEEKWANEWKKYYKTFNITDKIVIKPSWLAYDVAGDEIVIEMDPGMAFGSGTHETTSMCV 165

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           ++L    K  + +LD   GSG  G VA KL  S +G+++    + +A +
Sbjct: 166 QLLEKYLKKSNRVLDVGTGSGILGIVAAKLGASVLGVDIDPMSVKVAIE 214


>gi|195055410|ref|XP_001994612.1| GH17335 [Drosophila grimshawi]
 gi|193892375|gb|EDV91241.1| GH17335 [Drosophila grimshawi]
          Length = 276

 Score = 42.3 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 9/83 (10%)

Query: 191 GSERLRNKDGEKLHPT-----QKPEALLSRILVSSTKPGD----IILDPFFGSGTSGAVA 241
             E   N D  K + T     +    +  R L     P D     ILD   GSG SG+V 
Sbjct: 10  PPEIFYNDDEAKKYSTNTRIIEIQVEMAERALELLALPDDDEPRFILDIGCGSGLSGSVL 69

Query: 242 KKLRRSFIGIEMKQDYIDIATKR 264
           +     +IGI++ +  +DIA +R
Sbjct: 70  EDSDHMWIGIDISKSMLDIAVER 92


>gi|152980437|ref|YP_001354663.1| ribosomal protein L11 methyltransferase [Janthinobacterium sp.
           Marseille]
 gi|166223419|sp|A6T2B6|PRMA_JANMA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|151280514|gb|ABR88924.1| ribosomal protein L11 methyltransferase [Janthinobacterium sp.
           Marseille]
          Length = 310

 Score = 42.3 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L    L +    G  +LD   GSG    VA KL     IGI++    I
Sbjct: 146 GTGSHPTTR---LCMEWLEAHPPVGLSVLDYGCGSGILAMVAAKLGSTDVIGIDIDPQAI 202

Query: 259 DIA 261
             A
Sbjct: 203 KSA 205


>gi|119511076|ref|ZP_01630195.1| ParB-like nuclease [Nodularia spumigena CCY9414]
 gi|119464247|gb|EAW45165.1| ParB-like nuclease [Nodularia spumigena CCY9414]
          Length = 442

 Score = 42.3 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIE 252
           E +++ ++   T   + ++ PF G+G      +++ R  FIG E
Sbjct: 372 EGIVNYLIHLYTNQNNFVIAPFMGNGEILIACERMGRICFIGDE 415


>gi|33240415|ref|NP_875357.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|50401517|sp|Q7VBX7|Y965_PROMA RecName: Full=Uncharacterized RNA methyltransferase Pro_0965
 gi|33237942|gb|AAQ00010.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 419

 Score = 42.3 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 59/181 (32%), Gaps = 24/181 (13%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
           I   P+ K  G T      +    D     D LI   S  +    +        +K    
Sbjct: 210 IQPKPNNKIFGATTEILTGRDYIYDKFCHMDILIGSTSFFQVNLVE-------AEKAINC 262

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
           +  I+ S+T     I+D + G GT            IGIE+  +  +IA  R A +  + 
Sbjct: 263 IRNII-SNTNKIVRIIDAYSGIGTMSIPLASDGYRVIGIEINNEAHEIAI-RNAEINNIK 320

Query: 273 NIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISG-TELGSI 331
            I        +  P++          + P   L             D +LI   T+L  I
Sbjct: 321 TITFENQDVTKYLPKI----------LLPNDFLILDPPRKGL----DPSLIDVITKLMPI 366

Query: 332 H 332
           H
Sbjct: 367 H 367


>gi|170289748|ref|YP_001736564.1| putative RNA methylase [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170173828|gb|ACB06881.1| putative RNA methylase [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 193

 Score = 42.3 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 47/133 (35%), Gaps = 10/133 (7%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYIDIATK 263
           P     AL+    +     G  + D   G+G     A     S  IGI++  + I+IA +
Sbjct: 20  PANLAAALIHMCYMMGDLEGKSVADLGCGNGILAIGALLYGASSAIGIDLDPEAIEIAKR 79

Query: 264 RIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
               +  LG     V+  +     V  + +++            ++   + T+  D  L 
Sbjct: 80  NADRLGLLGRARFLVMDVRDFSEEV--DTVIQNPP-------FGSRRRHADTLFLDVALR 130

Query: 324 SGTELGSIHRVGA 336
               + S+H  G 
Sbjct: 131 RAKVVYSLHSAGN 143


>gi|238749740|ref|ZP_04611245.1| hypothetical protein yrohd0001_30600 [Yersinia rohdei ATCC 43380]
 gi|238712395|gb|EEQ04608.1| hypothetical protein yrohd0001_30600 [Yersinia rohdei ATCC 43380]
          Length = 631

 Score = 42.3 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
           N   N +   + ++I+ + +S L     +  D+IF DPP
Sbjct: 505 NLRVNGLTGGQHRLIQADCLSWLSN-TDEQFDVIFIDPP 542


>gi|114561642|ref|YP_749155.1| ribosomal protein L11 methyltransferase [Shewanella frigidimarina
           NCIMB 400]
 gi|122300896|sp|Q088J8|PRMA_SHEFN RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|114332935|gb|ABI70317.1| LSU ribosomal protein L11P methyltransferase [Shewanella
           frigidimarina NCIMB 400]
          Length = 293

 Score = 42.3 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 54/154 (35%), Gaps = 13/154 (8%)

Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
           +   L +    +   I + +S P   F G+ F +  E +         + +  ++  ++ 
Sbjct: 55  VMIALFDAGTDLAPTIEFLESMP---FLGKGFNHKIEQV---EDKDWIREWMDSFHPIQF 108

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
            +      S   IP  +    + +     G   HPT    AL    L S       ++D 
Sbjct: 109 GSRLWICPSWREIPDPTAVNVILDPGLAFGTGTHPTT---ALCLEWLDSLDLSNQEVIDF 165

Query: 231 FFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
             GSG     A KL  +   G+++    ID +  
Sbjct: 166 GCGSGILAIAAIKLGAKKVTGVDIDYQAIDASKA 199


>gi|322832264|ref|YP_004212291.1| rRNA (guanine-N(2)-)-methyltransferase [Rahnella sp. Y9602]
 gi|321167465|gb|ADW73164.1| rRNA (guanine-N(2)-)-methyltransferase [Rahnella sp. Y9602]
          Length = 706

 Score = 42.3 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 20/113 (17%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++I+ + +S L  +  +  D+IF DPP         +     + ++  
Sbjct: 580 NLRANDLTGRQHRLIQADCLSYL-GMCDEQFDVIFIDPP--------TFSNSKRMAESFD 630

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
              D             A +   +R+L+ NGT+    +          L  L 
Sbjct: 631 VQRDHL-----------ALMKDLKRILRRNGTIMFSNNKRGFQMDLDGLSKLG 672


>gi|153005748|ref|YP_001380073.1| hypothetical protein Anae109_2889 [Anaeromyxobacter sp. Fw109-5]
 gi|152029321|gb|ABS27089.1| conserved hypothetical protein [Anaeromyxobacter sp. Fw109-5]
          Length = 225

 Score = 42.3 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +R LV+ T+   ++ DPF G G+  AVA       +G+E+ +   + A  
Sbjct: 171 ARFLVAHTRCRTVV-DPFCGLGSMLAVANAHGLDAVGVELSRQRAERARA 219


>gi|110803308|ref|YP_699057.1| O-methyltransferase family protein [Clostridium perfringens SM101]
 gi|110683809|gb|ABG87179.1| O-methyltransferase family protein [Clostridium perfringens SM101]
          Length = 214

 Score = 42.3 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 5/48 (10%)

Query: 3   QKNSLAINENQNSIFEW----KDKIIKGNSISVLEKLPAKSVDLIFAD 46
           +++   IN  + +I ++    K  I++G+ + VLE L  +  D+IF D
Sbjct: 87  ERDDNMINYAKENIKKFGLEEKINILQGDCLEVLESLQDE-FDMIFMD 133


>gi|254369300|ref|ZP_04985312.1| hypothetical protein FTAG_00263 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122250|gb|EDO66390.1| hypothetical protein FTAG_00263 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 281

 Score = 42.3 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 74/224 (33%), Gaps = 29/224 (12%)

Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
           Y N   I T++ N+     N I                  ++E +           + ++
Sbjct: 47  YENHHDIDTIIANIKQKFENIIESEI--------------SYEII---KDQQWEAAWLYD 89

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSSTKPGD 225
           Y+ ++  N ++ +  +W  P           D          E   +    L        
Sbjct: 90  YEPIEIGN-NIVVYPNWRQPPQDNKHTYIVVDPSIAFGCGNHETTKMCLEWLEQHVSKDT 148

Query: 226 IILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            +LD   G+G     A KL   +  GI++  + I+ +   I + Q     + T  +    
Sbjct: 149 TVLDYGCGTGVLAIGAVKLGAKYAEGIDIDPNSIESS---IKNAQENDVTDKTNFSDN-- 203

Query: 285 EPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTEL 328
            P   F+L+V         +L +  GNI+ ++   G L     +
Sbjct: 204 PPTQQFDLVVANIF---SNVLMSLVGNITTSLKKGGRLALSGII 244


>gi|62261639|gb|AAX78004.1| unknown protein [synthetic construct]
          Length = 752

 Score = 42.3 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 44/140 (31%), Gaps = 20/140 (14%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N+I   K   I+ + IS L+    K  D+IF DPP                  + +
Sbjct: 623 NFTLNNIDAKKHSFIQADCISWLKTNKDK-FDVIFLDPP----------------TFSNS 665

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
              D     +         +      LK +G L+   +Y        +L+  N   ++ I
Sbjct: 666 KRMDDILDIQRDHELL---INLAMDSLKKDGILYFSNNYRRFKMSPQILEKFNCENIDKI 722

Query: 130 VWRKSNPMPNFRGRRFQNAH 149
              +           ++  +
Sbjct: 723 CLSRDFLSNKNIHNCWEIKY 742


>gi|238757648|ref|ZP_04618832.1| hypothetical protein yaldo0001_19690 [Yersinia aldovae ATCC 35236]
 gi|238704153|gb|EEP96686.1| hypothetical protein yaldo0001_19690 [Yersinia aldovae ATCC 35236]
          Length = 706

 Score = 42.3 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
           N   N +   + ++I+ + +S L     +  D+IF DPP
Sbjct: 580 NLRANGLTGQQHRLIQADCLSWLSN-TDEQFDVIFIDPP 617


>gi|238785947|ref|ZP_04629911.1| hypothetical protein yberc0001_25120 [Yersinia bercovieri ATCC
           43970]
 gi|238713137|gb|EEQ05185.1| hypothetical protein yberc0001_25120 [Yersinia bercovieri ATCC
           43970]
          Length = 706

 Score = 42.3 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
           N   N +   + ++I+ + +S L     +  D+IF DPP
Sbjct: 580 NLRANGLTGQQHRLIQADCLSWLSN-TDEQFDVIFIDPP 617


>gi|51595782|ref|YP_069973.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia pseudotuberculosis
           IP 32953]
 gi|153950189|ref|YP_001401517.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia pseudotuberculosis
           IP 31758]
 gi|81825864|sp|Q66CG1|RLML_YERPS RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|229560198|sp|A7FJT9|RLML_YERP3 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|51589064|emb|CAH20682.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
           32953]
 gi|152961684|gb|ABS49145.1| putative methyltransferase [Yersinia pseudotuberculosis IP 31758]
          Length = 706

 Score = 42.3 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
           N   N +   + ++I+ + +S L     +  D+IF DPP
Sbjct: 580 NLRANGLTGQQHRLIQADCLSWLSN-TDEQFDVIFIDPP 617


>gi|158333917|ref|YP_001515089.1| DNA modification methyltransferase [Acaryochloris marina MBIC11017]
 gi|158304158|gb|ABW25775.1| DNA modification methyltransferase, putative [Acaryochloris marina
           MBIC11017]
          Length = 426

 Score = 42.3 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNG-QLYRPDHSLVDAVTDSWD 73
              ++  +   L  +S+D +   PPY  + +  +  R +  L+  + D  D
Sbjct: 224 YHQDARDLTRILQPESIDAVITSPPYPNEKDYTRTTRLESVLLGFLKDPSD 274



 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 17/96 (17%)

Query: 208 KPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE-------------- 252
            P  L+   +          +LDPF G+GT+   AKK     +G E              
Sbjct: 31  FPPHLVRTYINKFGLTEKSTLLDPFCGTGTTIVEAKKQGIPAVGTEATPMSWFASRTKTT 90

Query: 253 --MKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
             +  D +  A +RI                K+  P
Sbjct: 91  WTVDPDQVRRAAERICDRLATDITPKNTTHLKKLAP 126


>gi|157273385|gb|ABV27284.1| DNA methyltransferase [Candidatus Chloracidobacterium thermophilum]
          Length = 412

 Score = 42.3 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
             ++  ++ +       ILDPF G+GT+   A    R     ++  
Sbjct: 38  LKIVEELIANHPNAQ-RILDPFCGTGTTALCAACYGRESTTADINP 82


>gi|90578614|ref|ZP_01234424.1| hypothetical N6-adenine-specific DNA methylase [Vibrio angustum
           S14]
 gi|90439447|gb|EAS64628.1| hypothetical N6-adenine-specific DNA methylase [Vibrio angustum
           S14]
          Length = 712

 Score = 42.3 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 24/108 (22%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
           + ++ +N       E+    ++ + +  L+++   + DLIF DPP         +     
Sbjct: 586 QENMELNNQVGPQHEY----VQADCLQWLQEVDD-TFDLIFIDPP--------TFSNSKR 632

Query: 64  LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
           +        D     E             +R+L+P+G +    +    
Sbjct: 633 MKQTFDIQRDHIMLME-----------NLKRMLRPDGQIVFSNNKRQF 669


>gi|296241883|ref|YP_003649370.1| putative RNA methylase [Thermosphaera aggregans DSM 11486]
 gi|296094467|gb|ADG90418.1| putative RNA methylase [Thermosphaera aggregans DSM 11486]
          Length = 355

 Score = 42.3 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 209 PEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
              L   ++ ++  + GD+I DPF G+GT   +A  +  S IGIE+ 
Sbjct: 190 NPRLAKALINLARVREGDVIADPFAGTGTIPIIASAIGISSIGIELD 236


>gi|14590840|ref|NP_142912.1| hypothetical protein PH0997 [Pyrococcus horikoshii OT3]
 gi|3257411|dbj|BAA30094.1| 374aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 374

 Score = 42.3 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 48/140 (34%), Gaps = 19/140 (13%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           P  L   ++  S      +LDPF G+GT          +  G ++++  +  A K I  +
Sbjct: 183 PPRLARVMVNLSEIRRGNVLDPFCGTGTIVMELTLQGLNAYGTDIEEGRVRDAKKNIDWL 242

Query: 269 QPLGNIELTVLTG-------KRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG- 320
           +    I    +         ++  PR  F+ ++    +  G+ L        A   A G 
Sbjct: 243 RKEFRIRKYPVLKVCDVRRLRKCFPRTRFDAIITEPYM--GKPLKYKPSRGEAIKIAKGL 300

Query: 321 ---------TLISGTELGSI 331
                    +     + GSI
Sbjct: 301 DRLYYQAFESFADVLKRGSI 320


>gi|302867245|ref|YP_003835882.1| methyltransferase [Micromonospora aurantiaca ATCC 27029]
 gi|302570104|gb|ADL46306.1| Methyltransferase type 11 [Micromonospora aurantiaca ATCC 27029]
          Length = 201

 Score = 41.9 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 16/121 (13%)

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK-----RIASV 268
           +R+L +   PG  +LD   G+G   A         +G++     ++ A       R    
Sbjct: 37  ARLLDALVPPGARVLDAGCGTGRVAAALAARGHDVVGVDADPTLVEAARADHPGPRFLVA 96

Query: 269 QPLGNIELTVLTGKRTEPRVAFNLLVERG----LIQPGQILTNAQGNISATVCADGTLIS 324
                 EL +      EP   F+  V  G     + PG    +    ++A V  DG ++ 
Sbjct: 97  ---DLAELDLAAQGEAEP---FDAAVLAGNVMVFVAPGTE-RDVLARVAAHVRPDGLVVV 149

Query: 325 G 325
           G
Sbjct: 150 G 150


>gi|115727536|ref|XP_782141.2| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
          Length = 468

 Score = 41.9 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 47/126 (37%), Gaps = 9/126 (7%)

Query: 156 SPSPKAKGYTF-NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK-LHP--TQKPEA 211
              P    Y F +Y        D   R      I  G +RL ++   K  H       +A
Sbjct: 117 MRDPDQVFYIFEDYGVQPNQAPDKPHRIFVGRWISDGQKRLAHRYSVKTRHFIGNTSMDA 176

Query: 212 LLSRIL--VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           LLS ++   +  + GD++LDPF G+G+    A        G ++     +I   R  S +
Sbjct: 177 LLSLVMTNQAGVREGDLVLDPFVGTGSLLVAAAHFGGYVSGCDIN---YNIIHGRGKSSR 233

Query: 270 PLGNIE 275
                E
Sbjct: 234 AQPKTE 239


>gi|298206673|ref|YP_003714852.1| adenine-specific DNA modification methyltransferase [Croceibacter
           atlanticus HTCC2559]
 gi|83849304|gb|EAP87172.1| adenine-specific DNA modification methyltransferase [Croceibacter
           atlanticus HTCC2559]
          Length = 374

 Score = 41.9 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 7/99 (7%)

Query: 181 RSDWLIPICSGSERLRNKD--GEKLHP-----TQKPEALLSRILVSSTKPGDIILDPFFG 233
           + D         E   NK   G K H       +   A+   ++ + +  GD + D F G
Sbjct: 6   KWDDFKIRPPFKEAPFNKRNWGNKQHSLCSFYGKLKPAISHHLVDTFSSEGDNVFDCFTG 65

Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
           SGT    A    R    +++    I + T +I +    G
Sbjct: 66  SGTIPFEASLNNRKSYALDINPISITLTTAKIQNQSKEG 104


>gi|291563951|emb|CBL42767.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [butyrate-producing bacterium SS3/4]
          Length = 318

 Score = 41.9 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 11/170 (6%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSSTKPGD 225
           Y      +  +   +   IP     + L   D      T K E   L  R L    KPG 
Sbjct: 115 YFKPFTVDHILIKPTWEEIPEEHKDKLLIQIDPGTAFGTGKHETTQLCIRQLEKYVKPGV 174

Query: 226 IILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATKRIASV----QPLGNIELTVLT 280
            +LD   GSG  G  A KL   ++ G ++ ++ I    + +A+     +  G I+  ++ 
Sbjct: 175 KVLDLGTGSGILGIAALKLGAEYVFGTDLDENAITAVHENLAANDIPEEKFGVIQGNIID 234

Query: 281 GKRTEPRVAFN--LLVERGLIQPGQILTNAQGNISATVCADGTLISGTEL 328
            K T+    +    +V   ++    I+   Q  +   +   G  IS   +
Sbjct: 235 DKATQDAAGYECYDIVVANIL--ADIIIMIQKQVPFHLKKGGIFISSGII 282


>gi|225714456|gb|ACO13074.1| methyltransferase WBSCR22 [Lepeophtheirus salmonis]
          Length = 279

 Score = 41.9 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 207 QKPEALLSRILVSSTKPGDI---ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           Q    +  R +     P D+   ILD   GSG SG V ++    +IG+++    +++A +
Sbjct: 33  QIQNDMTERAMELLNLPPDVPCFILDLGCGSGLSGEVLEENGHFWIGMDISSAMLNVARE 92

Query: 264 R 264
           R
Sbjct: 93  R 93


>gi|124485247|ref|YP_001029863.1| hypothetical protein Mlab_0420 [Methanocorpusculum labreanum Z]
 gi|124362788|gb|ABN06596.1| putative RNA methylase [Methanocorpusculum labreanum Z]
          Length = 317

 Score = 41.9 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 4/110 (3%)

Query: 150 ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-HPTQK 208
           E ++           T + +             + L  I  GS   RN       HP   
Sbjct: 101 ERMMGQKIHGTVDLNTPDVEYRAVFTNGRCFFGEVLHTIDRGSYAYRNPQRRAFFHPGVM 160

Query: 209 PEALLSRILVSST--KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
              L++R +V+ T  +PG+ + DPF G+G      + +    +G +   +
Sbjct: 161 MP-LMARTMVNLTHVEPGEKLCDPFCGTGGMLLECEMMGIDAVGSDYDPE 209


>gi|297198629|ref|ZP_06916026.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
 gi|197714625|gb|EDY58659.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
          Length = 212

 Score = 41.9 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 48/117 (41%), Gaps = 17/117 (14%)

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA---SVQP 270
            R+     +    +LD   G+G+   +A +      G++     +D+A  ++A   +V  
Sbjct: 51  ERLRGWLPERPSDVLDLGCGTGSLSLLAAEQGHRVTGVDRSPAMVDLARAKLAGRDAVFL 110

Query: 271 LGNIELTVLTGKRTEPRVAFNLLVERGLI----QPGQILTNAQGNISATVCADGTLI 323
           +G+     +  +R      F++++ R ++     PG++L          +   G L+
Sbjct: 111 VGDAAHPPVGEQR------FDVILCRHVLWALPDPGRVL----RQWWGLLRPGGRLV 157


>gi|307352835|ref|YP_003893886.1| putative RNA methylase [Methanoplanus petrolearius DSM 11571]
 gi|307156068|gb|ADN35448.1| putative RNA methylase [Methanoplanus petrolearius DSM 11571]
          Length = 317

 Score = 41.9 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 2/105 (1%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGDI 226
           Y A+ +       R  + I     + R   +     HP      +   ++ +S    GD+
Sbjct: 121 YRAVFSGERCFFGRVLYRIDRGGFAYRNPMRRAF-FHPGVMMPIMARTLVNLSFAGEGDL 179

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           +LDPF G+G      + L    IG +M +  ++   + + S + L
Sbjct: 180 LLDPFCGTGGILLEGQLLGCRVIGSDMDRFMLEGCRENLPSAEVL 224


>gi|168020308|ref|XP_001762685.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686093|gb|EDQ72484.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 296

 Score = 41.9 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 211 ALLSRILVSSTKPGDII----LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            L  R L     P D +    LD   GSG SG    +    +IG+++ +  +D+A +R
Sbjct: 35  KLSERALELLALPDDGVSRLLLDIGCGSGLSGETLSENGHHWIGMDISEAMLDVALER 92


>gi|328876114|gb|EGG24477.1| hypothetical protein DFA_02720 [Dictyostelium fasciculatum]
          Length = 236

 Score = 41.9 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 31/59 (52%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           +Q  E     + +S  K G +ILD   GSG SG V       +IG ++ +D ++++ +R
Sbjct: 33  SQMAERAYELLSLSDDKEGLLILDIGCGSGISGDVLSDHGHQWIGCDISKDMLNVSVER 91


>gi|260890632|ref|ZP_05901895.1| conserved hypothetical protein [Leptotrichia hofstadii F0254]
 gi|260859677|gb|EEX74177.1| conserved hypothetical protein [Leptotrichia hofstadii F0254]
          Length = 298

 Score = 41.9 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 54/166 (32%), Gaps = 15/166 (9%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ----------LY 58
           +N+  N   + K KI   ++  +  +    + DL+F D PY   +              Y
Sbjct: 65  LNQYYNLFPKGKYKITNMDAKKL--EFKDNTFDLVFTDFPYGDTVPYFEQSILWNAWLKY 122

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR---IG 115
             D+     +++S  +  + E +       +    RVLK            + F    I 
Sbjct: 123 NVDYKNEIVISNSKMRDKTKEKFKEDIEKAIKEIHRVLKLGKKFIFTYHSLSGFEWLCIT 182

Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
             LQ   F I++  + ++    P    R      + ++        
Sbjct: 183 NALQLAGFEIIDCELLQQKTFTPRQLNRNKTIKGDLIVVCRKIKNK 228


>gi|227485207|ref|ZP_03915523.1| hypothetical protein HMPREF0072_0610 [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227236811|gb|EEI86826.1| hypothetical protein HMPREF0072_0610 [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 47

 Score = 41.9 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
            VA +L RS IGI+   +Y++IA KR+  +     
Sbjct: 1   MVANRLGRSGIGIDNNTEYLEIAKKRLLGLTSTPE 35


>gi|213025989|ref|ZP_03340436.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
          enterica serovar Typhi str. 404ty]
          Length = 121

 Score = 41.9 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPP 48
           ++I+ + +  L +   +  DLIF DPP
Sbjct: 58 HRLIQADCLGWLRE-ANEQFDLIFIDPP 84


>gi|150400573|ref|YP_001324339.1| putative RNA methylase [Methanococcus aeolicus Nankai-3]
 gi|150013276|gb|ABR55727.1| putative RNA methylase [Methanococcus aeolicus Nankai-3]
          Length = 264

 Score = 41.9 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 55/146 (37%), Gaps = 25/146 (17%)

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK--RIAS 267
            A+    +  + KP DI+ D   GSG    VA +  +    +E+       A +  +I  
Sbjct: 21  VAVFKEAIEQTVKPNDIVYDLGTGSGILAMVASQKAKKVYALELDPITCMYAKENLKIND 80

Query: 268 VQPLGNIELTVLTGKR--------------------TEPRVA-FNLLVERGLIQP-GQIL 305
            + + NI L                           TEP+V   N ++E+G ++  G+I+
Sbjct: 81  YENIKNINLIEADASEYNFKEQADVIIAELLDTALITEPQVPVLNSIIEKGYLKENGKII 140

Query: 306 TNAQGNISATVCAD-GTLISGTELGS 330
                N +  V A  G +    E+ S
Sbjct: 141 PEKAYNTAQIVIAKMGHIYYDEEVVS 166


>gi|91785249|ref|YP_560455.1| ribosomal protein L11 methyltransferase [Burkholderia xenovorans
           LB400]
 gi|123358450|sp|Q13U36|PRMA_BURXL RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|91689203|gb|ABE32403.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [Burkholderia xenovorans LB400]
          Length = 300

 Score = 41.9 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 57/143 (39%), Gaps = 16/143 (11%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYI 258
           G   HPT +   L    L  S +PG  +LD   GSG    +AKK       GI++    +
Sbjct: 145 GTGSHPTTR---LCMEWLEQSVQPGQSVLDYGCGSGILAILAKKCGADPVYGIDIDPQAV 201

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + A  R  S +    +   +       P   F+++V   L  P +++ +    +S+ V  
Sbjct: 202 ESA--RHNSERNRAEVTYGLPD---ACPTGEFDIVVANILSNPLKLMASM---LSSKVKP 253

Query: 319 DGTLISGTELGS----IHRVGAK 337
            G +     L      + +V A+
Sbjct: 254 GGRIALSGILARQADEVAQVYAR 276


>gi|118594163|ref|ZP_01551510.1| ribosomal protein L11 methyltransferase [Methylophilales bacterium
           HTCC2181]
 gi|118439941|gb|EAV46568.1| ribosomal protein L11 methyltransferase [Methylophilales bacterium
           HTCC2181]
          Length = 294

 Score = 41.9 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 13/86 (15%)

Query: 183 DWLIPICSGSERLRNKD---------GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
            W+IP     E  +  +         G   HPT     L    L+ + + GD +LD   G
Sbjct: 116 VWIIPSWHNIEDEKATNIILDPGLAFGTGSHPTT---HLCIEWLLDNMEKGDNVLDYGCG 172

Query: 234 SGTSGAVAKKLR-RSFIGIEMKQDYI 258
           SG     AKKL   + +G+++    I
Sbjct: 173 SGILAICAKKLGANNVLGVDIDPQAI 198


>gi|305662452|ref|YP_003858740.1| putative RNA methylase [Ignisphaera aggregans DSM 17230]
 gi|304377021|gb|ADM26860.1| putative RNA methylase [Ignisphaera aggregans DSM 17230]
          Length = 343

 Score = 41.9 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 192 SERLRNKDGEKLHPTQKPE--ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           S+R  +K       T KP    LL  +   ST+  D ILDPF G G     A  +     
Sbjct: 156 SDREPHKRPYYRPGTMKPVLARLLINLAKISTERHDTILDPFCGVGGIAIEACLMGFRVY 215

Query: 250 GIEMKQDYI 258
             ++    +
Sbjct: 216 CSDIDMRMV 224


>gi|327395458|dbj|BAK12880.1| ribosomal protein L11 methyltransferase PrmA [Pantoea ananatis
           AJ13355]
          Length = 294

 Score = 41.9 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 7/108 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P       + +     G   HPT    +L    
Sbjct: 95  WEREWMENFHPMRFGERLWICPSWRDVPDPDAVNVMLDPGLAFGTGTHPTT---SLCLTW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           L      G  ++D   GSG     A KL     IGI++    I  +  
Sbjct: 152 LDGLDLAGKTVIDFGCGSGILAIAALKLGAAQAIGIDIDLQAIQASRD 199


>gi|290953767|ref|ZP_06558388.1| 23S rRNA m(2)G2445 methyltransferase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312872|ref|ZP_06803601.1| 23S rRNA m(2)G2445 methyltransferase [Francisella tularensis subsp.
           holarctica URFT1]
          Length = 708

 Score = 41.9 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 40/121 (33%), Gaps = 20/121 (16%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N+I   K   I+ + IS L+    K  D+IF DPP                  + +
Sbjct: 597 NFTLNNIDAKKHSFIQADCISWLKTNKDK-FDVIFLDPP----------------TFSNS 639

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
              D     +         +      LK +G L+   +Y        +L+  N   ++ I
Sbjct: 640 KRMDDILDIQRDHELL---INLAMDSLKKDGILYFSNNYRRFKMSPQILEKFNCENIDKI 696

Query: 130 V 130
            
Sbjct: 697 C 697


>gi|256851208|ref|ZP_05556597.1| ribosomal protein L11 methyltransferase [Lactobacillus jensenii
           27-2-CHN]
 gi|260660632|ref|ZP_05861547.1| ribosomal protein L11 methyltransferase [Lactobacillus jensenii
           115-3-CHN]
 gi|256616270|gb|EEU21458.1| ribosomal protein L11 methyltransferase [Lactobacillus jensenii
           27-2-CHN]
 gi|260548354|gb|EEX24329.1| ribosomal protein L11 methyltransferase [Lactobacillus jensenii
           115-3-CHN]
          Length = 314

 Score = 41.9 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 57/156 (36%), Gaps = 19/156 (12%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYI-----DIATKRI 265
           L+   L  S      +LD   GSG     A KL    +   ++  + +     +IA  ++
Sbjct: 165 LVMMALERSMTKPAKVLDVGTGSGILAIAASKLGAESVLATDISDEAVTAANENIALNKL 224

Query: 266 ASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISG 325
            +++ +    L  + GK          L+   ++   +IL +    ++  +  +G +I  
Sbjct: 225 NNIKVIKANLLKNINGK--------FDLILANIL--AEILFDLIPELNDHLAPNGKIIFS 274

Query: 326 TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSI 361
                 +    KV  S   NG++     + G    +
Sbjct: 275 GID---YLQAEKVKQSLAENGFSVKTTMQEGRWVCL 307


>gi|156740960|ref|YP_001431089.1| hypothetical protein Rcas_0958 [Roseiflexus castenholzii DSM 13941]
 gi|156232288|gb|ABU57071.1| hypothetical protein Rcas_0958 [Roseiflexus castenholzii DSM 13941]
          Length = 408

 Score = 41.9 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           L+  +L   T    ++LDPF G+GT+     +  
Sbjct: 34  LVQDVLSQITPHDTVVLDPFCGTGTTALACAERG 67


>gi|294142601|ref|YP_003558579.1| 50S ribosomal protein L11 methyltransferase [Shewanella violacea
           DSS12]
 gi|293329070|dbj|BAJ03801.1| ribosomal protein L11 methyltransferase [Shewanella violacea DSS12]
          Length = 293

 Score = 41.9 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 36/108 (33%), Gaps = 7/108 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  +K         S   IP       + +     G   HPT    AL    
Sbjct: 95  WEREWMDNFHPIKFGKRLWICPSWREIPDPQAVNVILDPGLAFGTGTHPTT---ALCLEW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           L        +++D   GSG     A KL  +   GI++    I+ +  
Sbjct: 152 LDGLELTNKVVIDFGCGSGILAVAALKLGAKEVTGIDIDYQAIEASKA 199


>gi|229035114|ref|ZP_04189060.1| Modification methylase [Bacillus cereus AH1271]
 gi|228728180|gb|EEL79210.1| Modification methylase [Bacillus cereus AH1271]
          Length = 428

 Score = 41.9 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 21/78 (26%), Gaps = 1/78 (1%)

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKP-GDIILDPFFGSGT 236
                +                G   +P +    +    +          +LDPF GSGT
Sbjct: 13  PMCIENGKTYAIKQPNPNSYTHGYFKYPCKFIPEIPRWFMNKYLGEGKASVLDPFSGSGT 72

Query: 237 SGAVAKKLRRSFIGIEMK 254
           +   +        G E+ 
Sbjct: 73  TLLESIINGHDAYGTEID 90


>gi|42784651|ref|NP_981898.1| modification methylase, putative [Bacillus cereus ATCC 10987]
 gi|42740583|gb|AAS44506.1| modification methylase, putative [Bacillus cereus ATCC 10987]
          Length = 438

 Score = 41.9 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 21/78 (26%), Gaps = 1/78 (1%)

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKP-GDIILDPFFGSGT 236
                +                G   +P +    +    +          +LDPF GSGT
Sbjct: 23  PMCIENGKTYAIKQPNPNSYTHGYFKYPCKFIPEIPRWFMNKYLGEGKASVLDPFSGSGT 82

Query: 237 SGAVAKKLRRSFIGIEMK 254
           +   +        G E+ 
Sbjct: 83  TLLESIINGHDAYGTEID 100


>gi|268590130|ref|ZP_06124351.1| putative methylase [Providencia rettgeri DSM 1131]
 gi|291314399|gb|EFE54852.1| putative methylase [Providencia rettgeri DSM 1131]
          Length = 702

 Score = 41.9 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 36/116 (31%), Gaps = 26/116 (22%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLNGQLYRPDHSLVD 66
           N   N +   + ++I+ + +S L      S    DLIF DPP         +     +  
Sbjct: 579 NLQANGLTGRQHRLIQADCLSWLA----NSREQFDLIFIDPP--------TFSNSKRMDG 626

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                 D               +   +R+L+  GT+    +          ++ L 
Sbjct: 627 TFDVQRDHI-----------QLITHLKRLLRRGGTVMFSNNKRGFKMDLEAIKELG 671


>gi|22299487|ref|NP_682734.1| DNA modification methyltransferase [Thermosynechococcus elongatus
           BP-1]
 gi|22295670|dbj|BAC09496.1| DNA modification methyltransferase [Thermosynechococcus elongatus
           BP-1]
          Length = 416

 Score = 41.9 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
             G +ILDPF G+GT+   +K+     +G+E   
Sbjct: 19  NEGSVILDPFCGTGTTLVESKRQGIPSLGMEANP 52



 Score = 38.8 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 7/28 (25%), Positives = 14/28 (50%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY 49
           ++   ++      LP +S+D +   PPY
Sbjct: 208 QVYLADARGPDRVLPPQSIDAVITSPPY 235


>gi|320333131|ref|YP_004169842.1| rRNA (guanine-N(2)-)-methyltransferase [Deinococcus maricopensis
           DSM 21211]
 gi|319754420|gb|ADV66177.1| rRNA (guanine-N(2)-)-methyltransferase [Deinococcus maricopensis
           DSM 21211]
          Length = 407

 Score = 41.9 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
           +++N  A+N +  +I   +   ++ +    L+  PA+S DLI  DPP
Sbjct: 270 AERN-FALNADDPNIRASEHHPVQADVFEWLKDAPARSFDLIILDPP 315


>gi|187477073|ref|YP_785097.1| hypothetical protein BAV0564 [Bordetella avium 197N]
 gi|115421659|emb|CAJ48169.1| conserved hypothetical protein [Bordetella avium 197N]
          Length = 206

 Score = 41.9 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 19/29 (65%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYN 50
           +I  G++++ LE++ A   DL+  DPP+ 
Sbjct: 107 RIHAGDALAALERMDASRFDLVLLDPPFG 135


>gi|134046833|ref|YP_001098318.1| putative RNA methylase [Methanococcus maripaludis C5]
 gi|132664458|gb|ABO36104.1| putative RNA methylase [Methanococcus maripaludis C5]
          Length = 260

 Score = 41.9 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 55/146 (37%), Gaps = 28/146 (19%)

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            ++    + +S K  DI+ D   GSG    +A K  +    +E+     +   + I    
Sbjct: 21  VSVFKEAVETSVKSEDIVFDLGTGSGILAMIAAKNAKHVYAVELDPITTEYTRENIKEND 80

Query: 270 --------------PLGNIELTVL-----TGKRTEPRVA-FNLLVERGLIQPG-----QI 304
                         P       V+     TG  TEP+V   N ++E+GL++ G     + 
Sbjct: 81  FKNITVIEDNAAYYPFSEKADLVIAELLDTGLITEPQVPVLNSIIEKGLLKKGGIIIPEE 140

Query: 305 LTNAQGNISATVCADGTLISGTELGS 330
           + N+   + + +   G +    E+ S
Sbjct: 141 VYNSAQLVKSKM---GHIYYDEEVTS 163


>gi|302528535|ref|ZP_07280877.1| predicted protein [Streptomyces sp. AA4]
 gi|302437430|gb|EFL09246.1| predicted protein [Streptomyces sp. AA4]
          Length = 361

 Score = 41.9 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 18/101 (17%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           +  ++++  E L   SVDLI  D PY +Q        D  L  +  D             
Sbjct: 246 LNADTLTTDEVLRPASVDLIVTDAPYGVQ---HGSHRDTGLARSPRD------------- 289

Query: 84  FTRAWLLACRRVLKPNGTLWVIGSYHNIFR--IGTMLQNLN 122
              A +    RVL+P G L +  + H + R  +  +L+   
Sbjct: 290 LLAAAIPVWNRVLRPGGALGISWNTHVLPREELVAILERAG 330


>gi|240103381|ref|YP_002959690.1| Methylase, RNA modification protein, putative [Thermococcus
           gammatolerans EJ3]
 gi|239910935|gb|ACS33826.1| Methylase, RNA modification protein, putative [Thermococcus
           gammatolerans EJ3]
          Length = 335

 Score = 41.9 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 5/73 (6%)

Query: 199 DGEKLH--PTQKPEALL---SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           +  K H  P  +P +L    SR LV+ TK    +LDP  G+G     A  L     G+++
Sbjct: 152 ERRKAHHRPFFRPISLHPRVSRALVNLTKAQRELLDPMMGAGGILIEAGLLGLKVYGVDI 211

Query: 254 KQDYIDIATKRIA 266
           + + ++ A + + 
Sbjct: 212 RPEMVEGAERNLR 224


>gi|229068871|ref|ZP_04202165.1| O-antigen biosynthesis protein [Bacillus cereus F65185]
 gi|228714155|gb|EEL66036.1| O-antigen biosynthesis protein [Bacillus cereus F65185]
          Length = 229

 Score = 41.9 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 57/160 (35%), Gaps = 24/160 (15%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L  +  E  +    P  LL  I     +    +LD    SG  GA  K+      GIE  
Sbjct: 8   LYEEKSEHYYNAANP-NLLKHIKKEWKE----VLDIGCSSGALGAAIKENGTRVSGIEAF 62

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNA---QG 310
            +  + A +R+  V  LG+IE   L  +  +   V F  ++E         L +      
Sbjct: 63  PEAAEKARERLDHVI-LGDIEKIDLPYEEGQFDCVLFGDVLEH--------LFDPWAVIE 113

Query: 311 NISATVCADGTLISGTELGSIHRVGAKVSGSETCNG-WNF 349
            +   +  +G +++     SI  V      +    G W +
Sbjct: 114 KVKPYIKQNGVILA-----SIPNVAHISVLAPLLAGNWTY 148


>gi|254374212|ref|ZP_04989694.1| conserved hypothetical protein [Francisella novicida GA99-3548]
 gi|151571932|gb|EDN37586.1| conserved hypothetical protein [Francisella novicida GA99-3548]
          Length = 718

 Score = 41.9 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 20/136 (14%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N +   K   I+ + IS L+    K  D+IF DPP                  + +   D
Sbjct: 601 NKLDIKKHSFIQADCISWLKTNKDK-FDVIFLDPP----------------TFSNSKRMD 643

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                +         +      LK +G L+   +Y        +L+  N   ++ I   +
Sbjct: 644 DILDIQRDHELL---INLAMDSLKKDGILYFSNNYRRFKMSTQILEKFNCENIDKICLSR 700

Query: 134 SNPMPNFRGRRFQNAH 149
                      ++  +
Sbjct: 701 DFLSNKNIHNCWEIKY 716


>gi|254372755|ref|ZP_04988244.1| conserved hypothetical protein [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570482|gb|EDN36136.1| conserved hypothetical protein [Francisella novicida GA99-3549]
          Length = 717

 Score = 41.9 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 20/136 (14%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N +   K   I+ + IS L+    K  D+IF DPP                  + +   D
Sbjct: 601 NKLDIKKHSFIQADCISWLKTNKDK-FDVIFLDPP----------------TFSNSKRMD 643

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                +         +      LK +G L+   +Y        +L+  N   ++ I   +
Sbjct: 644 DILDIQRDHELL---INLAMDSLKKDGILYFSNNYRRFKMSTQILEKFNCENIDKICLSR 700

Query: 134 SNPMPNFRGRRFQNAH 149
                      ++  +
Sbjct: 701 DFLSNKNIHNCWEIKY 716


>gi|297206074|ref|ZP_06923469.1| ribosomal protein L11 methyltransferase [Lactobacillus jensenii
           JV-V16]
 gi|297149200|gb|EFH29498.1| ribosomal protein L11 methyltransferase [Lactobacillus jensenii
           JV-V16]
          Length = 314

 Score = 41.9 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 57/156 (36%), Gaps = 19/156 (12%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYI-----DIATKRI 265
           L+   L  S      +LD   GSG     A KL    +   ++  + +     +IA  ++
Sbjct: 165 LVMMALERSMTKPAKVLDVGTGSGILAIAASKLGAESVLATDISDEAVTAANENIALNKL 224

Query: 266 ASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISG 325
            +++ +    L  + GK          L+   ++   +IL +    ++  +  +G +I  
Sbjct: 225 NNIKVIKANLLKNINGK--------FDLILANIL--AEILFDLIPELNDHLAPNGKIIFS 274

Query: 326 TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSI 361
                 +    KV  S   NG++     + G    +
Sbjct: 275 GID---YLQAEKVKQSLAENGFSVKTTMQEGRWVCL 307


>gi|170030833|ref|XP_001843292.1| williams Beuren syndrome chromosome region 22 [Culex
           quinquefasciatus]
 gi|167868411|gb|EDS31794.1| williams Beuren syndrome chromosome region 22 [Culex
           quinquefasciatus]
          Length = 275

 Score = 41.9 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 28/49 (57%)

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           +L        +ILD   GSG SG+V +    ++IGI++ +  +D+A +R
Sbjct: 43  LLALGEDEPHMILDIGCGSGLSGSVLEDQGHAWIGIDIAKAMLDVAVER 91


>gi|27468183|ref|NP_764820.1| methyltransferase [Staphylococcus epidermidis ATCC 12228]
 gi|57867035|ref|YP_188722.1| ribosomal protein L11 methyltransferase [Staphylococcus epidermidis
           RP62A]
 gi|38605282|sp|Q8CSC7|PRMA_STAES RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|81819386|sp|Q5HNW8|PRMA_STAEQ RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|27315729|gb|AAO04864.1|AE016748_98 probable methyltransferase [Staphylococcus epidermidis ATCC 12228]
 gi|57637693|gb|AAW54481.1| ribosomal protein L11 methyltransferase [Staphylococcus epidermidis
           RP62A]
 gi|329737421|gb|EGG73675.1| ribosomal protein L11 methyltransferase [Staphylococcus epidermidis
           VCU028]
          Length = 312

 Score = 41.9 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 69/202 (34%), Gaps = 30/202 (14%)

Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL--------------HPTQKPEALLS 214
              +  N     R+     I    E    ++  +L              HPT    ++  
Sbjct: 108 WENEWKNYFHPFRASKQFTIVPSWESYVKENDNELCIELDPGMAFGTGDHPTT---SMCL 164

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATKRIASVQPLGN 273
           + + +  KP D ++D   GSG     +  L    I  +++ +  +++A +          
Sbjct: 165 KAIETFVKPTDSVIDVGTGSGILSIASHLLGVQRIKALDIDEMAVNVAKENFKKNHCDDA 224

Query: 274 IELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGS--- 330
           IE       + E    FN+++   L    + +     N   T+  DG  I+   +     
Sbjct: 225 IEAVPGNLLKNENE-KFNIVIANILAHIIEEMIEDTYN---TLIEDGYFITSGIIEEKYQ 280

Query: 331 -----IHRVGAKVSGSETCNGW 347
                + R+G K+   E  NGW
Sbjct: 281 DIESQMKRIGFKIISVEHDNGW 302


>gi|325967781|ref|YP_004243973.1| RNA methylase [Vulcanisaeta moutnovskia 768-28]
 gi|323706984|gb|ADY00471.1| putative RNA methylase [Vulcanisaeta moutnovskia 768-28]
          Length = 198

 Score = 41.9 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 213 LSRILVSS--TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           ++R+LV+   T   ++ LDPF GSG     A  +    IGI+    Y+ +
Sbjct: 42  IARLLVNLARTNENEVFLDPFVGSGIIAQEAMLVGAHVIGIDTNPRYLSM 91



 Score = 40.4 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 24/79 (30%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           I  +S+  L  +   S+  I  DPPYN        R   S +D               D+
Sbjct: 101 INSDSL--LSPIKDNSIHSIATDPPYN--------RLSISNID--------------LDS 136

Query: 84  FTRAWLLACRRVLKPNGTL 102
           F R +     R+L+  G +
Sbjct: 137 FYRKFAEESFRILRRGGYI 155


>gi|20095011|ref|NP_614858.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
 gi|19888274|gb|AAM02788.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
          Length = 431

 Score = 41.9 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 47/136 (34%), Gaps = 17/136 (12%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE--AY 81
           +  ++    ++L     DL+  DPP              S+       WD+ ++ E   +
Sbjct: 295 LCMDARDAPDQLGEGIADLVLVDPP---------CTGTGSVYSKPEKRWDRETTGEPTKW 345

Query: 82  DAFTRAWLLACRRVLKPNGTL----WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
                  L    R+LKP G +      I    N   I  +++      L D+    ++P 
Sbjct: 346 AQLQWELLKVAVRLLKPGGRIVYSTCSITLTENERLIERLVRRYRGLELVDVPLEWASPG 405

Query: 138 PNF--RGRRFQNAHET 151
                  R + + H+T
Sbjct: 406 VRMPEARRIWPHRHDT 421


>gi|318040743|ref|ZP_07972699.1| hypothetical protein SCB01_03512 [Synechococcus sp. CB0101]
          Length = 437

 Score = 41.9 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 5/108 (4%)

Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL-----SR 215
            KG      ++    +        +  I    E   NK       ++ P  ++       
Sbjct: 164 VKGRWGIPQSIMEFKKSNIHLQKLVELINKSDEVEINKRKLHFGTSEIPNYMMLADHAEF 223

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           ++   TK  D+IL+   G GT+   A   +R  +GI+     ++   +
Sbjct: 224 LVQYYTKENDLILENMMGRGTNVLAALYHKRRVVGIDCNPANVNKVRE 271


>gi|262361448|gb|ACY58169.1| hypothetical protein YPD4_1261 [Yersinia pestis D106004]
          Length = 663

 Score = 41.9 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
           N   N +   + ++I+ + +S L     +  D+IF DPP
Sbjct: 537 NLRVNGLTGQQHRLIQADCLSWLSN-TDEQFDVIFIDPP 574


>gi|238792370|ref|ZP_04636004.1| hypothetical protein yinte0001_12980 [Yersinia intermedia ATCC
           29909]
 gi|238728296|gb|EEQ19816.1| hypothetical protein yinte0001_12980 [Yersinia intermedia ATCC
           29909]
          Length = 663

 Score = 41.9 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
           N   N +   + ++I+ + +S L     +  D+IF DPP
Sbjct: 537 NLRVNGLTGQQHRLIQADCLSWLSN-TDEQFDVIFIDPP 574


>gi|186894863|ref|YP_001871975.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia pseudotuberculosis
           PB1/+]
 gi|229560199|sp|B2JYS1|RLML_YERPB RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|186697889|gb|ACC88518.1| putative RNA methylase [Yersinia pseudotuberculosis PB1/+]
          Length = 706

 Score = 41.9 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
           N   N +   + ++I+ + +S L     +  D+IF DPP
Sbjct: 580 NLRVNGLTGQQHRLIQADCLSWLSN-TDEQFDVIFIDPP 617


>gi|145599549|ref|YP_001163625.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia pestis Pestoides F]
 gi|229560201|sp|A4TMZ0|RLML_YERPP RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|145211245|gb|ABP40652.1| hypothetical protein YPDSF_2277 [Yersinia pestis Pestoides F]
          Length = 706

 Score = 41.9 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
           N   N +   + ++I+ + +S L     +  D+IF DPP
Sbjct: 580 NLRVNGLTGQQHRLIQADCLSWLSN-TDEQFDVIFIDPP 617


>gi|238789288|ref|ZP_04633075.1| hypothetical protein yfred0001_40970 [Yersinia frederiksenii ATCC
           33641]
 gi|238722620|gb|EEQ14273.1| hypothetical protein yfred0001_40970 [Yersinia frederiksenii ATCC
           33641]
          Length = 706

 Score = 41.9 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
           N   N +   + ++I+ + +S L     +  D+IF DPP
Sbjct: 580 NLRVNGLTGQQHRLIQADCLSWLSN-TDEQFDVIFIDPP 617


>gi|238795880|ref|ZP_04639393.1| hypothetical protein ymoll0001_25520 [Yersinia mollaretii ATCC
           43969]
 gi|238720343|gb|EEQ12146.1| hypothetical protein ymoll0001_25520 [Yersinia mollaretii ATCC
           43969]
          Length = 706

 Score = 41.9 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
           N   N +   + ++I+ + +S L     +  D+IF DPP
Sbjct: 580 NLRVNGLTGQQHRLIQADCLSWLSN-TDEQFDVIFIDPP 617


>gi|22126629|ref|NP_670052.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia pestis KIM 10]
 gi|45441002|ref|NP_992541.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108806710|ref|YP_650626.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia pestis Antiqua]
 gi|108812720|ref|YP_648487.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia pestis Nepal516]
 gi|149366675|ref|ZP_01888709.1| hypothetical protein YPE_1910 [Yersinia pestis CA88-4125]
 gi|162420288|ref|YP_001606460.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia pestis Angola]
 gi|165924470|ref|ZP_02220302.1| putative methyltransferase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165938952|ref|ZP_02227505.1| putative methyltransferase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166010221|ref|ZP_02231119.1| putative methyltransferase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166211676|ref|ZP_02237711.1| putative methyltransferase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167399732|ref|ZP_02305250.1| putative methyltransferase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167419556|ref|ZP_02311309.1| putative methyltransferase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167423963|ref|ZP_02315716.1| putative methyltransferase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|170024866|ref|YP_001721371.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia pseudotuberculosis
           YPIII]
 gi|218928566|ref|YP_002346441.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia pestis CO92]
 gi|229841394|ref|ZP_04461553.1| 23S rRNA m2G2445 methyltransferase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229843499|ref|ZP_04463645.1| 23S rRNA m2G2445 methyltransferase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229895874|ref|ZP_04511044.1| 23S rRNA m2G2445 methyltransferase [Yersinia pestis Pestoides A]
 gi|229903120|ref|ZP_04518233.1| 23S rRNA m2G2445 methyltransferase [Yersinia pestis Nepal516]
 gi|270486917|ref|ZP_06203991.1| THUMP domain protein [Yersinia pestis KIM D27]
 gi|294503405|ref|YP_003567467.1| hypothetical protein YPZ3_1295 [Yersinia pestis Z176003]
 gi|122979748|sp|Q1CA41|RLML_YERPA RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|123246336|sp|Q1CGJ3|RLML_YERPN RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|123777462|sp|Q7CHK7|RLML_YERPE RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|229560200|sp|A9R7L5|RLML_YERPG RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|229560202|sp|B1JQR7|RLML_YERPY RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|21959639|gb|AAM86303.1|AE013877_11 putative oxidoreductase [Yersinia pestis KIM 10]
 gi|45435861|gb|AAS61418.1| Predicted N6-adenine-specific DNA methylases [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108776368|gb|ABG18887.1| hypothetical protein YPN_2559 [Yersinia pestis Nepal516]
 gi|108778623|gb|ABG12681.1| hypothetical protein YPA_0713 [Yersinia pestis Antiqua]
 gi|115347177|emb|CAL20070.1| conserved hypothetical protein [Yersinia pestis CO92]
 gi|149291049|gb|EDM41124.1| hypothetical protein YPE_1910 [Yersinia pestis CA88-4125]
 gi|162353103|gb|ABX87051.1| putative methyltransferase [Yersinia pestis Angola]
 gi|165913099|gb|EDR31723.1| putative methyltransferase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165923530|gb|EDR40662.1| putative methyltransferase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165990707|gb|EDR43008.1| putative methyltransferase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207447|gb|EDR51927.1| putative methyltransferase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962297|gb|EDR58318.1| putative methyltransferase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167050440|gb|EDR61848.1| putative methyltransferase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167056812|gb|EDR66575.1| putative methyltransferase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169751400|gb|ACA68918.1| putative RNA methylase [Yersinia pseudotuberculosis YPIII]
 gi|229678890|gb|EEO74993.1| 23S rRNA m2G2445 methyltransferase [Yersinia pestis Nepal516]
 gi|229689846|gb|EEO81907.1| 23S rRNA m2G2445 methyltransferase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697760|gb|EEO87807.1| 23S rRNA m2G2445 methyltransferase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229700797|gb|EEO88826.1| 23S rRNA m2G2445 methyltransferase [Yersinia pestis Pestoides A]
 gi|262365018|gb|ACY61575.1| hypothetical protein YPD8_0887 [Yersinia pestis D182038]
 gi|270335421|gb|EFA46198.1| THUMP domain protein [Yersinia pestis KIM D27]
 gi|294353864|gb|ADE64205.1| hypothetical protein YPZ3_1295 [Yersinia pestis Z176003]
 gi|320015715|gb|ADV99286.1| putative methyltransferase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 706

 Score = 41.9 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
           N   N +   + ++I+ + +S L     +  D+IF DPP
Sbjct: 580 NLRVNGLTGQQHRLIQADCLSWLSN-TDEQFDVIFIDPP 617


>gi|296160499|ref|ZP_06843315.1| ribosomal protein L11 methyltransferase [Burkholderia sp. Ch1-1]
 gi|295889248|gb|EFG69050.1| ribosomal protein L11 methyltransferase [Burkholderia sp. Ch1-1]
          Length = 300

 Score = 41.5 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 57/143 (39%), Gaps = 16/143 (11%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYI 258
           G   HPT +   L    L  S +PG  +LD   GSG    +AKK       GI++    +
Sbjct: 145 GTGSHPTTR---LCMEWLEQSVQPGQSVLDYGCGSGILAILAKKCGADPVYGIDIDPQAV 201

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + A  R  S +    +   +       P   F+++V   L  P +++ +    +S+ V  
Sbjct: 202 ESA--RHNSERNRAEVTYGLPD---ECPTGEFDIVVANILSNPLKLMASM---LSSKVKP 253

Query: 319 DGTLISGTELGS----IHRVGAK 337
            G +     L      + +V A+
Sbjct: 254 GGRIALSGILARQADEVAQVYAR 276


>gi|253688178|ref|YP_003017368.1| putative RNA methylase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251754756|gb|ACT12832.1| putative RNA methylase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 705

 Score = 41.5 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 20/102 (19%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++I+ + +S L     +  D+IF DPP         +     + ++  
Sbjct: 579 NLRVNGLTGRQHRLIQADCLSWLHN-ANEQFDVIFIDPP--------TFSNSKRMEESFD 629

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
              D             A +   +R+L+  GT+    +    
Sbjct: 630 VQRDHL-----------ALMKDLKRLLRRGGTIMFSNNKRGF 660


>gi|227111932|ref|ZP_03825588.1| 23S rRNA m(2)G2445 methyltransferase [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 705

 Score = 41.5 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 20/102 (19%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++I+ + +S L     +  D+IF DPP         +     + ++  
Sbjct: 579 NLRVNGLTGRQHRLIQADCLSWLHN-ANEQFDVIFIDPP--------TFSNSKRMEESFD 629

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
              D             A +   +R+L+  GT+    +    
Sbjct: 630 VQRDHL-----------ALMKDLKRLLRRGGTIMFSNNKRGF 660


>gi|254557705|ref|YP_003064122.1| cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus
           plantarum JDM1]
 gi|300769500|ref|ZP_07079386.1| cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308181789|ref|YP_003925917.1| cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|254046632|gb|ACT63425.1| cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus
           plantarum JDM1]
 gi|300492915|gb|EFK28097.1| cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308047280|gb|ADN99823.1| cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 397

 Score = 41.5 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 74/215 (34%), Gaps = 16/215 (7%)

Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
           F N+         S   K    +  +      D      WL P  + S      D + L 
Sbjct: 89  FNNSKFKKFMPKQSHSEKKSQQDIQSHYDVGNDFYKM--WLDPTMTYSCAYFKHDTDTLE 146

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATK 263
             Q    +   I   + +PG  +LD   G GT     AK+     +G+ + Q+  ++  +
Sbjct: 147 EAQIH-KVHHIIQKLNPQPGKTLLDIGCGWGTLMLTAAKEYGLKVVGVTLSQEQYNLVAQ 205

Query: 264 RIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP--GQILTNAQGNISATVCADGT 321
           RI   + L ++    L   R      F+ +   G+ +      L      ++  + ADG 
Sbjct: 206 RIKD-EGLSDVAEVRLQDYRELGDETFDYITSVGMFEHVGKDNLAMYFERVNHYLKADGV 264

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLG 356
            +       +H +  +  G+   NGW   Y    G
Sbjct: 265 AL-------LHGITRQQGGAT--NGWLDKYIFPGG 290


>gi|94984393|ref|YP_603757.1| hypothetical protein Dgeo_0285 [Deinococcus geothermalis DSM 11300]
 gi|94554674|gb|ABF44588.1| SAM-dependent methyltransferase, rRNA adenine N-6-methyltransferase
           family [Deinococcus geothermalis DSM 11300]
          Length = 191

 Score = 41.5 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 22/28 (78%), Gaps = 2/28 (7%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY 49
           +I++G+++ +L +L   S D++F+DPPY
Sbjct: 104 RILRGDALGLLPRL--GSFDVVFSDPPY 129


>gi|299473609|emb|CBN78003.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 281

 Score = 41.5 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 211 ALLSRILVSSTKPGD---IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            +  R +     P      ILD   GSG SG   ++    ++G+++ +D +D+A +R
Sbjct: 34  EISDRCIELLNIPPGQSYFILDVGCGSGLSGEALEEAGHVWLGVDISRDMLDVANER 90


>gi|307731030|ref|YP_003908254.1| 50S ribosomal protein L11 methyltransferase [Burkholderia sp.
           CCGE1003]
 gi|307585565|gb|ADN58963.1| ribosomal protein L11 methyltransferase [Burkholderia sp. CCGE1003]
          Length = 300

 Score = 41.5 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYI 258
           G   HPT +   L    L  S KPG  +LD   GSG    +AKK       GI++    +
Sbjct: 145 GTGSHPTTR---LCMEWLEQSVKPGQSVLDYGCGSGILAILAKKCGADPVYGIDIDPQAV 201

Query: 259 DIAT 262
           + A 
Sbjct: 202 ESAR 205


>gi|123187376|gb|ABM69265.1| M2.BmrI [Bacillus megaterium]
          Length = 504

 Score = 41.5 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 1/78 (1%)

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSST-KPGDIILDPFFGSGTSGAVAKKLR 245
           P+ +      +  G   +  +    ++  IL          ++DPF GSGT+        
Sbjct: 84  PVNNRQATRYSAHGIHEYKGKFNPQVVKSILNLFNIDENSNVIDPFSGSGTTILECSLQN 143

Query: 246 RSFIGIEMKQDYIDIATK 263
              +G+++    I IA  
Sbjct: 144 IHAVGLDINPLAIFIANA 161


>gi|120405642|ref|YP_955471.1| type 11 methyltransferase [Mycobacterium vanbaalenii PYR-1]
 gi|119958460|gb|ABM15465.1| Methyltransferase type 11 [Mycobacterium vanbaalenii PYR-1]
          Length = 280

 Score = 41.5 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 206 TQKP-EALLSRILVSSTKPGDIILDPFFGSG-TSGAVAKKLRRS--FIGIEMKQDYIDIA 261
           T KP E L+   + ++  P + ILD   G+G T+ A+A++L       GI++ +  I  A
Sbjct: 31  TLKPFEDLIVDSVAAAAGPREQILDLGCGTGATTLALAERLGAHGGCTGIDISEPMIHAA 90

Query: 262 TKR 264
             R
Sbjct: 91  RTR 93


>gi|78356789|ref|YP_388238.1| type III restriction system methylase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219194|gb|ABB38543.1| type III restriction system methylase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 173

 Score = 41.5 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
           ++  I+G+++ VL+ L    A  + +I+ DPPYN           H  +D  
Sbjct: 91  QNLFIEGDNLEVLKILQKSYAGKIKVIYIDPPYNTGKEFIYPDKFHDNLDTY 142


>gi|30019362|ref|NP_830993.1| O-antigen biosynthesis protein rfbC [Bacillus cereus ATCC 14579]
 gi|228951694|ref|ZP_04113796.1| O-antigen biosynthesis protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229043060|ref|ZP_04190790.1| O-antigen biosynthesis protein [Bacillus cereus AH676]
 gi|296501905|ref|YP_003663605.1| O-antigen biosynthesis protein rfbC [Bacillus thuringiensis BMB171]
 gi|29894905|gb|AAP08194.1| O-antigen biosynthesis protein rfbC [Bacillus cereus ATCC 14579]
 gi|228726301|gb|EEL77528.1| O-antigen biosynthesis protein [Bacillus cereus AH676]
 gi|228807979|gb|EEM54496.1| O-antigen biosynthesis protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|296322957|gb|ADH05885.1| O-antigen biosynthesis protein rfbC [Bacillus thuringiensis BMB171]
          Length = 229

 Score = 41.5 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 57/160 (35%), Gaps = 24/160 (15%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L  +  E  +    P  LL  I     +    +LD    SG  GA  K+      GIE  
Sbjct: 8   LYEEKSEHYYNAANP-NLLKHIKKEWKE----VLDIGCSSGALGAAIKENGTRVSGIEAF 62

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNA---QG 310
            +  + A +R+  V  LG+IE   L  +  +   V F  ++E         L +      
Sbjct: 63  PEAAEKAKERLDHVI-LGDIEKIDLPYEEGQFDCVLFGDVLEH--------LFDPWAVIE 113

Query: 311 NISATVCADGTLISGTELGSIHRVGAKVSGSETCNG-WNF 349
            +   +  +G +++     SI  V      +    G W +
Sbjct: 114 KVKPYIKQNGVILA-----SIPNVAHISVLAPLLAGNWTY 148


>gi|299144530|ref|ZP_07037609.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298517618|gb|EFI41358.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 520

 Score = 41.5 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 7/106 (6%)

Query: 206 TQKPEALLSRILVSST-KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           T + E L    +        DII D + G GT    A +  +  IG+E+ ++ I+ A K 
Sbjct: 257 TTQTEKLYQEAIDYLEINKQDIIFDLYCGIGTISLFAARNAKKVIGVEIVENAIEDARK- 315

Query: 265 IASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQG 310
                   +++       ++E  +   LL E  +I P +I+ +   
Sbjct: 316 ---NAEFNSVDNVRFICGKSEE-ILEKLLDEEKII-PNKIILDPPR 356


>gi|229169060|ref|ZP_04296776.1| Ribosomal protein L11 methyltransferase [Bacillus cereus AH621]
 gi|228614469|gb|EEK71578.1| Ribosomal protein L11 methyltransferase [Bacillus cereus AH621]
          Length = 312

 Score = 41.5 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 62/189 (32%), Gaps = 25/189 (13%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-------------HPTQKPEALL 213
           ++             SD    + +  E   +   EK+             HPT     + 
Sbjct: 109 DWATAWKKYYHPVQISDTFTIVPTWEEYTPSSPDEKIIELDPGMAFGTGTHPTTT---MC 165

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATK--RIASVQP 270
            R L  + +PGD ++D   GSG     A KL  + +   ++    ++ A    R+     
Sbjct: 166 IRALEKTVQPGDTVIDVGTGSGVLSIAAAKLGAASVQAYDLDPVAVESAEMNVRLNKTDD 225

Query: 271 LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGS 330
           + N+    L      P      L+   L+    +L          V   G  I+   +G+
Sbjct: 226 IVNVGQNSLLEGIEGPV----DLIVANLLAEIILLFPEDAARV--VKPGGLFITSGIIGA 279

Query: 331 IHRVGAKVS 339
             ++ +K  
Sbjct: 280 KEKIISKAL 288


>gi|218235863|ref|YP_002365997.1| hypothetical protein BCB4264_A1264 [Bacillus cereus B4264]
 gi|218163820|gb|ACK63812.1| conserved hypothetical protein [Bacillus cereus B4264]
          Length = 229

 Score = 41.5 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 57/160 (35%), Gaps = 24/160 (15%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L  +  E  +    P  LL  I     +    +LD    SG  GA  K+      GIE  
Sbjct: 8   LYEEKSEHYYNAANP-NLLKHIKKEWKE----VLDIGCSSGALGAAIKENGTRVSGIEAF 62

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNA---QG 310
            D  + A +R+  V  LG+IE   L  +  +   V F  ++E         L +      
Sbjct: 63  PDAAEKAKERLDHVI-LGDIEKIDLPYEEGQFDCVLFGDVLEH--------LFDPWAVIE 113

Query: 311 NISATVCADGTLISGTELGSIHRVGAKVSGSETCNG-WNF 349
            +   +  +G +++     SI  V      +    G W +
Sbjct: 114 KVKPYIKQNGVILA-----SIPNVAHISVLAPLLAGNWTY 148


>gi|167585786|ref|ZP_02378174.1| hypothetical protein BuboB_10648 [Burkholderia ubonensis Bu]
          Length = 77

 Score = 41.5 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
              ++  + S   PG  I+DPF G GT+   A +     +G
Sbjct: 37  VEQMAPFIGSHATPGGWIVDPFCGFGTTLVAAAQCGAPALG 77


>gi|81427660|ref|YP_394657.1| cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78609299|emb|CAI54345.1| Cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 395

 Score = 41.5 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 74/216 (34%), Gaps = 17/216 (7%)

Query: 145 FQNAHETLIWASPSPKA-KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
           F  +H  + +      + K    +  +      D      WL    + S     +  + L
Sbjct: 92  FMRSHSYIHFLPKQSHSEKASKKDIQSHYDLGNDFYQL--WLDKTMTYSCAYFEQPTDDL 149

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIAT 262
              Q    +   +   + +P   +LD   G GT     AK+     +GI + Q+  +   
Sbjct: 150 ETAQIN-KVHHILQKLNPQPNRTLLDIGCGWGTLMLTAAKEYHLKVVGITLSQEQYNFVQ 208

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLI-QPG-QILTNAQGNISATVCADG 320
           +RI   + L ++    L   R      F+ +   G+    G + L     +++  +  DG
Sbjct: 209 QRIDE-EGLSDVASVELVDYRELKHAPFDYITSVGMFEHVGQENLAEYFKDVADYLTDDG 267

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLG 356
             +       IH +  +  G++  N W   Y    G
Sbjct: 268 VAL-------IHGITRQQGGAK--NAWINKYIFPGG 294


>gi|325295169|ref|YP_004281683.1| ribosomal protein L11 methyltransferase [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065617|gb|ADY73624.1| Ribosomal protein L11 methyltransferase [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 270

 Score = 41.5 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 8/115 (6%)

Query: 150 ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL----HP 205
           E+L+      +     F    +      +         +  G+  +    G+      H 
Sbjct: 63  ESLLKEKNWNEEWKKYFKPVMVSEKIWVIPSWMKNDFKVPKGAIPIYIYPGQTFGTGTHE 122

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYID 259
           T K   L  R +    KP D  LD   GSG    +AKKL  +  +G +++++ ++
Sbjct: 123 TTK---LTMRFIEKILKPNDSFLDVGCGSGILSILAKKLGAKKVVGCDIQREVVE 174


>gi|315124649|ref|YP_004066653.1| putative cyclopropane-fatty-acyl-phospholipid synthase protein
           [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
 gi|315018371|gb|ADT66464.1| putative cyclopropane-fatty-acyl-phospholipid synthase protein
           [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
          Length = 312

 Score = 41.5 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 67/188 (35%), Gaps = 16/188 (8%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG-TSGAVAK 242
           WL    + S     +    L+  Q    +   +     K G+ +LD   G G  S   A+
Sbjct: 123 WLDDTMNYSCAYFKEPNNTLYEAQIN-KIEHTLKKLDLKEGEKLLDIGCGWGWLSIMAAQ 181

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLI-QP 301
           K     +GI + ++    A +R+  +     IE+ +   +  E    F+ +V  G+    
Sbjct: 182 KYGVKVVGITISEEQCKKAKERVKELGLEDKIEIRLQNYQDLEFENYFDKVVSVGMFEHV 241

Query: 302 GQILTNAQGNISATV-CADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
           G+            V    G+++       +H + A   G    N W   Y    G L S
Sbjct: 242 GKENLGLYFMKVKQVLKPGGSML-------LHSILAMFEGKT--NAWIDKYIFPGGYLPS 292

Query: 361 INTLRILV 368
              LR +V
Sbjct: 293 ---LREVV 297


>gi|298491107|ref|YP_003721284.1| methyltransferase ['Nostoc azollae' 0708]
 gi|298233025|gb|ADI64161.1| methyltransferase ['Nostoc azollae' 0708]
          Length = 195

 Score = 41.5 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 27/44 (61%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
           N  Q +  E K +I++GN +  L+KL ++  D I+ DPPY + L
Sbjct: 81  NWQQVATKEQKFQILRGNLLQQLKKLSSQKFDRIYFDPPYAIGL 124


>gi|256052626|ref|XP_002569863.1| methyltransferase-related [Schistosoma mansoni]
 gi|227284595|emb|CAY17307.1| methyltransferase-related [Schistosoma mansoni]
          Length = 285

 Score = 41.5 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 26/49 (53%)

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           +L        +ILD   GSG SG V  +    ++G+++ +D +++A  R
Sbjct: 52  LLALPEDEACMILDIGCGSGLSGEVITENGHHWVGVDISKDMLEVALDR 100


>gi|229078508|ref|ZP_04211068.1| O-antigen biosynthesis protein [Bacillus cereus Rock4-2]
 gi|229126623|ref|ZP_04255635.1| O-antigen biosynthesis protein [Bacillus cereus BDRD-Cer4]
 gi|229143924|ref|ZP_04272341.1| O-antigen biosynthesis protein [Bacillus cereus BDRD-ST24]
 gi|229177730|ref|ZP_04305104.1| O-antigen biosynthesis protein [Bacillus cereus 172560W]
 gi|228605694|gb|EEK63141.1| O-antigen biosynthesis protein [Bacillus cereus 172560W]
 gi|228639487|gb|EEK95900.1| O-antigen biosynthesis protein [Bacillus cereus BDRD-ST24]
 gi|228656563|gb|EEL12389.1| O-antigen biosynthesis protein [Bacillus cereus BDRD-Cer4]
 gi|228704824|gb|EEL57250.1| O-antigen biosynthesis protein [Bacillus cereus Rock4-2]
          Length = 232

 Score = 41.5 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 57/160 (35%), Gaps = 24/160 (15%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L  +  E  +    P  LL  I     +    +LD    SG  GA  K+      GIE  
Sbjct: 11  LYEEKSEHYYNAANP-NLLKHIKKEWKE----VLDIGCSSGALGAAIKENGTRVSGIEAF 65

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNA---QG 310
            +  + A +R+  V  LG+IE   L  +  +   V F  ++E         L +      
Sbjct: 66  PEAAEKAKERLDHVI-LGDIEKIDLPYEEGQFDCVLFGDVLEH--------LFDPWAVIE 116

Query: 311 NISATVCADGTLISGTELGSIHRVGAKVSGSETCNG-WNF 349
            +   +  +G +++     SI  V      +    G W +
Sbjct: 117 KVKPYIKQNGVILA-----SIPNVAHISVLAPLLAGNWTY 151


>gi|300864599|ref|ZP_07109458.1| putative methyltransferase [Oscillatoria sp. PCC 6506]
 gi|300337423|emb|CBN54606.1| putative methyltransferase [Oscillatoria sp. PCC 6506]
          Length = 180

 Score = 41.5 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
           +I++G++I+ L KL  +  D I+ DPPY   L
Sbjct: 93  QILRGDAIAELHKLAGQQFDRIYFDPPYASDL 124


>gi|28571505|ref|NP_649471.3| CG1074 [Drosophila melanogaster]
 gi|15292467|gb|AAK93502.1| SD03208p [Drosophila melanogaster]
 gi|28381132|gb|AAF52125.2| CG1074 [Drosophila melanogaster]
 gi|220956194|gb|ACL90640.1| CG1074-PA [synthetic construct]
          Length = 488

 Score = 41.5 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 3/83 (3%)

Query: 39  SVDLIFADPPYNLQLNGQLYRPDHS-LVDAVTDSWDKFSSFEAY--DAFTRAWLLACRRV 95
           S D I  DPPY ++   +      S   +  +DS   + S   Y   +     L    R 
Sbjct: 300 SFDCIITDPPYGIREATEKVEKKASVKANTRSDSMVHYPSTSHYSLQSLYGDLLEFSARH 359

Query: 96  LKPNGTLWVIGSYHNIFRIGTML 118
           LK  G L     +H+      ML
Sbjct: 360 LKLGGRLVCWIPFHSEDYDPKML 382



 Score = 36.1 bits (82), Expect = 9.5,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 19/37 (51%)

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            +  + GD++ DPF G+G+    A K     +G ++ 
Sbjct: 209 QAMVRNGDLVFDPFVGTGSLLVSAAKWGGYVLGADID 245


>gi|332288168|ref|YP_004419020.1| 23S rRNA methylteansferase [Gallibacterium anatis UMN179]
 gi|330431064|gb|AEC16123.1| 23S rRNA methylteansferase [Gallibacterium anatis UMN179]
          Length = 711

 Score = 41.5 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
           N I   + K+I+ + +  LEK      DLIF DPP
Sbjct: 591 NEIKGRQHKLIQADCLQWLEK-ATGQYDLIFVDPP 624


>gi|228906948|ref|ZP_04070815.1| O-antigen biosynthesis protein [Bacillus thuringiensis IBL 200]
 gi|228852696|gb|EEM97483.1| O-antigen biosynthesis protein [Bacillus thuringiensis IBL 200]
          Length = 232

 Score = 41.5 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 57/160 (35%), Gaps = 24/160 (15%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L  +  E  +    P  LL  I     +    +LD    SG  GA  K+      GIE  
Sbjct: 11  LYEEKSEHYYNAANP-NLLKHIKKEWKE----VLDIGCSSGALGAAIKENGTRVSGIEAL 65

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNA---QG 310
            +  + A +R+  V  LG+IE   L  +  +   + F  ++E         L +      
Sbjct: 66  PEAAEKAKERLDHVI-LGDIEKIDLPYEEGQFDCILFGDVLEH--------LFDPWAVIE 116

Query: 311 NISATVCADGTLISGTELGSIHRVGAKVSGSETCNG-WNF 349
            +   +  +G +++     SI  V      +    G W +
Sbjct: 117 KVKPYIKQNGVILA-----SIPNVAHISVLAPLLAGNWTY 151


>gi|86148557|ref|ZP_01066843.1| putative N6-adenine-specific DNA methylase [Vibrio sp. MED222]
 gi|85833660|gb|EAQ51832.1| putative N6-adenine-specific DNA methylase [Vibrio sp. MED222]
          Length = 706

 Score = 41.5 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 43/130 (33%), Gaps = 22/130 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + + ++ + +  L K    S DLIF DPP         +     +  +     D     E
Sbjct: 594 QHQFVQADCLQWLVK-EQGSYDLIFIDPP--------TFSNSKRMDQSFDVQRDHIQLME 644

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                        +R+L+  GT+    +  +       L+ L     N  +  K+ P+  
Sbjct: 645 -----------NLKRLLREEGTIVFSNNKRHFKMDVEGLEELGLKAQN--ISAKTLPLDF 691

Query: 140 FRGRRFQNAH 149
            R +   N  
Sbjct: 692 SRNKHIHNCW 701


>gi|251810995|ref|ZP_04825468.1| ribosomal protein L11 methyltransferase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282875996|ref|ZP_06284863.1| ribosomal protein L11 methyltransferase [Staphylococcus epidermidis
           SK135]
 gi|293366461|ref|ZP_06613138.1| ribosomal protein L11 methyltransferase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|251805505|gb|EES58162.1| ribosomal protein L11 methyltransferase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295021|gb|EFA87548.1| ribosomal protein L11 methyltransferase [Staphylococcus epidermidis
           SK135]
 gi|291319230|gb|EFE59599.1| ribosomal protein L11 methyltransferase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329735232|gb|EGG71524.1| ribosomal protein L11 methyltransferase [Staphylococcus epidermidis
           VCU045]
          Length = 312

 Score = 41.5 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 69/202 (34%), Gaps = 30/202 (14%)

Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL--------------HPTQKPEALLS 214
              +  N     R+     I    E    ++  +L              HPT    ++  
Sbjct: 108 WENEWKNYFHPFRASKQFTIVPSWESYVKENDNELCIELDPGMAFGTGDHPTT---SMCL 164

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATKRIASVQPLGN 273
           + + +  KP D ++D   GSG     +  L    I  +++ +  +++A +          
Sbjct: 165 KAIETFVKPTDSVIDVGTGSGILSIASHLLGVQRIKALDIDEMAVNVAKENFKKNHCDDA 224

Query: 274 IELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGS--- 330
           IE       + E    FN+++   L    + +     N   T+  DG  I+   +     
Sbjct: 225 IEAVPGNLLKNENE-KFNIVIANILAHIIEEMIEDTYN---TLIEDGYFITSGIIEEKYQ 280

Query: 331 -----IHRVGAKVSGSETCNGW 347
                + R+G K+   E  NGW
Sbjct: 281 DIESQMKRIGFKIISVEHDNGW 302


>gi|218709415|ref|YP_002417036.1| 23S rRNA m(2)G2445 methyltransferase [Vibrio splendidus LGP32]
 gi|218322434|emb|CAV18587.1| predicted N6-adenine-specific DNA methylase [Vibrio splendidus
           LGP32]
          Length = 706

 Score = 41.5 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 43/130 (33%), Gaps = 22/130 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + + ++ + +  L K    S DLIF DPP         +     +  +     D     E
Sbjct: 594 QHQFVQADCLQWLVK-EQGSYDLIFIDPP--------TFSNSKRMDQSFDVQRDHIQLME 644

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                        +R+L+  GT+    +  +       L+ L     N  +  K+ P+  
Sbjct: 645 -----------NLKRLLREEGTIVFSNNKRHFKMDVEGLEELGLKAQN--ISAKTLPLDF 691

Query: 140 FRGRRFQNAH 149
            R +   N  
Sbjct: 692 SRNKHIHNCW 701


>gi|237743777|ref|ZP_04574258.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
 gi|229432808|gb|EEO43020.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
          Length = 441

 Score = 41.5 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 4/92 (4%)

Query: 173 AANEDVQMRSDWLIPICS----GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
             N  + +++ W   I S      E +    G  L      E      L +       IL
Sbjct: 169 TKNPWLSIKNKWKESINSLKGRSKELIGEMYGTSLFDGAISEVFYKWFLPNKDIETKKIL 228

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           DPF G    GAVA+ L   + G +++++ ID+
Sbjct: 229 DPFCGGVIRGAVAELLGYKYTGFDIRKEQIDV 260


>gi|288941886|ref|YP_003444126.1| putative RNA methylase [Allochromatium vinosum DSM 180]
 gi|122447425|sp|Q1W3E0|RLML_ALLVD RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|90856153|gb|ABE01365.1| methyltransferase [Allochromatium vinosum]
 gi|288897258|gb|ADC63094.1| putative RNA methylase [Allochromatium vinosum DSM 180]
          Length = 735

 Score = 41.5 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 51/137 (37%), Gaps = 24/137 (17%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
           N I     ++I+ + +  ++ +  +   DLIF DPP     +    +  H  +D   D  
Sbjct: 600 NGIRGPNHQLIQADCLRWIDSMAGQRRFDLIFLDPP-----SFSTSKRMHGTLDIQRDHV 654

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           D               + A  R+L+P G L    +     R    L+ L  + ++DI   
Sbjct: 655 D--------------IIQATMRLLEPGGRLIFSNNLR---RFRIDLEGLAPFEVSDIS-A 696

Query: 133 KSNPMPNFRGRRFQNAH 149
           ++ P    R  R  N  
Sbjct: 697 QTLPRDFARNPRIHNCW 713


>gi|302389475|ref|YP_003825296.1| (LSU ribosomal protein L11P)-lysine N-methyltransferase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200103|gb|ADL07673.1| (LSU ribosomal protein L11P)-lysine N-methyltransferase
           [Thermosediminibacter oceani DSM 16646]
          Length = 314

 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 62/166 (37%), Gaps = 7/166 (4%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSSTKPGD 225
           Y       + + +R  W+       E +   D      T   E  A+   +L    + G+
Sbjct: 115 YYKTIHIGKRLVIRPSWIHYEPEKGEVVVELDPGMAFGTGTHETTAMCLELLEKYIEGGE 174

Query: 226 IILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            ++D   GSG     A KL     + I+  +  + +A + I        +E  V+ G+  
Sbjct: 175 TVIDVGCGSGILSIAAAKLGAGKVLAIDKDEVAVKVARENIKRNDTTQAVE--VIKGEGL 232

Query: 285 EPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGS 330
           +   A   ++   +I    ++ +  G  ++ +  +G  IS   + S
Sbjct: 233 DCVDAKADIIVANII--ADVIIDLAGVAASKLKQEGLFISSGIIKS 276


>gi|301162992|emb|CBW22540.1| putative modification methylase [Bacteroides fragilis 638R]
          Length = 424

 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTK---PGDIILDPFFGSGTSGAVAKKLRR 246
           +GSE+         +P + P  + ++ +    +     ++I D F G GT     KK   
Sbjct: 23  TGSEKECRMHKIHAYPAKFPAFITTKAIEFVKRRGGEVNLIADIFCGCGTVAYETKKNGI 82

Query: 247 SFIGIEMKQDYIDIAT 262
            F G ++      IA 
Sbjct: 83  DFWGCDINPVATLIAE 98



 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 7   LAINENQNSIFEWKDKIIKGNSISVL-EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV 65
           + I  N  ++   +++I K  +I+ L +K+     DLI   PPY             +L 
Sbjct: 212 MMIKANNENLISNENQI-KIENINFLDKKIENSFADLIVTSPPYVTSYEYADLHQLSTLW 270

Query: 66  DAVTDSW 72
               D +
Sbjct: 271 LGFVDDY 277


>gi|148657791|ref|YP_001277996.1| hypothetical protein RoseRS_3691 [Roseiflexus sp. RS-1]
 gi|148569901|gb|ABQ92046.1| hypothetical protein RoseRS_3691 [Roseiflexus sp. RS-1]
          Length = 313

 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
           L+  IL        I+LDPF G+GT+  V  +  
Sbjct: 36  LVQEILSHIAPQDAIVLDPFCGTGTTALVCAEKG 69


>gi|58380035|ref|XP_310259.2| AGAP003728-PA [Anopheles gambiae str. PEST]
 gi|55243849|gb|EAA05981.2| AGAP003728-PA [Anopheles gambiae str. PEST]
          Length = 278

 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            ++   LL+  +  +     +ILD   GSG SG+V ++    +IG+++ Q  +D+A +R
Sbjct: 37  CERAIELLA--IDPNDDAPQLILDIGCGSGLSGSVLEEQGHVWIGVDISQSMLDVAVER 93


>gi|242242853|ref|ZP_04797298.1| ribosomal protein L11 methyltransferase [Staphylococcus epidermidis
           W23144]
 gi|242233695|gb|EES36007.1| ribosomal protein L11 methyltransferase [Staphylococcus epidermidis
           W23144]
 gi|319400914|gb|EFV89133.1| ribosomal protein L11 methyltransferase [Staphylococcus epidermidis
           FRI909]
          Length = 312

 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 69/202 (34%), Gaps = 30/202 (14%)

Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL--------------HPTQKPEALLS 214
              +  N     R+     I    E    ++  +L              HPT    ++  
Sbjct: 108 WENEWKNYFHPFRASKQFTIVPSWESYVKENDNELCIELDPGMAFGTGDHPTT---SMCL 164

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATKRIASVQPLGN 273
           + + +  KP D ++D   GSG     +  L    I  +++ +  +++A +          
Sbjct: 165 KAIETFVKPTDSVIDVGTGSGILSIASHLLGVQRIKALDIDEMAVNVAKENFKKNHCDDA 224

Query: 274 IELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGS--- 330
           IE       + E    FN+++   L    + +     N   T+  DG  I+   +     
Sbjct: 225 IEAVPGNLLKNENE-KFNIVIANILAHIIEEMIEDTYN---TLIEDGYFITSGIIEEKYQ 280

Query: 331 -----IHRVGAKVSGSETCNGW 347
                + R+G K+   E  NGW
Sbjct: 281 DIESQMKRIGFKIISVEHDNGW 302


>gi|56707654|ref|YP_169550.1| 50S ribosomal protein L11, methyltransferase [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110670125|ref|YP_666682.1| 50S ribosomal protein L11, methyltransferase [Francisella
           tularensis subsp. tularensis FSC198]
 gi|224456725|ref|ZP_03665198.1| 50S ribosomal protein L11, methyltransferase [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|254370167|ref|ZP_04986173.1| 50S ribosomal protein L11 [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874471|ref|ZP_05247181.1| 50S ribosomal protein L11 [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|56604146|emb|CAG45151.1| 50S ribosomal protein L11, methyltransferase [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110320458|emb|CAL08534.1| 50S ribosomal protein L11, methyltransferase [Francisella
           tularensis subsp. tularensis FSC198]
 gi|151568411|gb|EDN34065.1| 50S ribosomal protein L11 [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254840470|gb|EET18906.1| 50S ribosomal protein L11 [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158814|gb|ADA78205.1| 50S ribosomal protein L11, methyltransferase [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 281

 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 85/257 (33%), Gaps = 31/257 (12%)

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
           F   E Y     A   +  R+ K +  + +   Y N   I T++ N+     N I     
Sbjct: 16  FDRIENYLFDNDA--GSVTRIDKSDDIISITVLYENHHDIDTIIANIKQKFENIIESEI- 72

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
                        ++E +           + ++Y+ ++  N ++ +  +W  P       
Sbjct: 73  -------------SYEII---KDQQWEAAWLYDYEPIEIGN-NIVVYPNWRQPPQDNKHT 115

Query: 195 LRNKDGEKLHPTQKPE--ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GI 251
               D          E   +    L         +LD   G+G     A KL   +  GI
Sbjct: 116 YIIVDPSIAFGCGNHETTKMCLEWLEQHVSKDTTVLDYGCGTGVLAIGAVKLGAKYAEGI 175

Query: 252 EMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
           ++  + I+ +   I + Q     + T  +     P   F+L+V         +L +  GN
Sbjct: 176 DIDPNSIESS---IKNAQENDVTDKTHFSDN--PPTQQFDLVVANIF---SNVLISLVGN 227

Query: 312 ISATVCADGTLISGTEL 328
           I+ ++   G L     +
Sbjct: 228 ITTSLKKGGRLALSGII 244


>gi|28379564|ref|NP_786456.1| cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus
           plantarum WCFS1]
 gi|28272404|emb|CAD65327.1| cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus
           plantarum WCFS1]
          Length = 397

 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 74/215 (34%), Gaps = 16/215 (7%)

Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
           F N+         S   K    +  +      D      WL P  + S      D + L 
Sbjct: 89  FNNSKFKKFMPKQSHSEKKSQQDIQSHYDVGNDFYKM--WLDPTMTYSCAYFKHDTDTLE 146

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATK 263
             Q    +   I   + +PG  +LD   G GT     AK+     +G+ + Q+  ++  +
Sbjct: 147 EAQIH-KVHHIIQKLNPQPGKTLLDIGCGWGTLMLTAAKEYGLKVVGVTLSQEQYNLVAQ 205

Query: 264 RIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP--GQILTNAQGNISATVCADGT 321
           RI   + L ++    L   R      F+ +   G+ +      L      ++  + ADG 
Sbjct: 206 RIKD-EGLSDVAEVRLQDYRELGNETFDYITSVGMFEHVGKDNLAMYFERVNHYLKADGV 264

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLG 356
            +       +H +  +  G+   NGW   Y    G
Sbjct: 265 AL-------LHGITRQQGGAT--NGWLDKYIFPGG 290


>gi|302812046|ref|XP_002987711.1| hypothetical protein SELMODRAFT_126447 [Selaginella moellendorffii]
 gi|300144603|gb|EFJ11286.1| hypothetical protein SELMODRAFT_126447 [Selaginella moellendorffii]
          Length = 188

 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 12/117 (10%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYI 258
           G   HPT K   L  + L  S + GD ILD   GSG     A K+     +G+++    +
Sbjct: 39  GTGEHPTTK---LCLKWLHKSVRSGDNILDYGTGSGILAIAALKMGASHAVGVDIDPMAV 95

Query: 259 --DIATKRIASVQPLGNIELTVLTGKRTEPRVA-----FNLLVERGLIQPGQILTNA 308
               +   + ++ P            + +P V      F+++V   L+ P   L N+
Sbjct: 96  SSSASNATLNALDPHAFEVFIAAADDKDDP-VPHGPGVFDVVVANILLNPLLTLANS 151


>gi|300716112|ref|YP_003740915.1| conserved uncharacterized protein YcbY [Erwinia billingiae Eb661]
 gi|299061948|emb|CAX59064.1| conserved uncharacterized protein YcbY [Erwinia billingiae Eb661]
          Length = 705

 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 49/140 (35%), Gaps = 22/140 (15%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++++ + +  L +  ++  DLIF DPP         +     + ++  
Sbjct: 580 NLRLNGLTGRQHRLMQADCLGWLSE-SSEQFDLIFIDPP--------TFSNSKRMEESFE 630

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
              D  +            +   +R+L+  GT+    +          L  LN  ++   
Sbjct: 631 IQRDHLT-----------LMKDLKRLLRKGGTIMFSNNKRGFKMDHDGLAELN--LVAQD 677

Query: 130 VWRKSNPMPNFRGRRFQNAH 149
           +  K+      R R+  N  
Sbjct: 678 ITAKTQSQDFARNRQIHNCW 697


>gi|195451280|ref|XP_002072845.1| GK13473 [Drosophila willistoni]
 gi|194168930|gb|EDW83831.1| GK13473 [Drosophila willistoni]
          Length = 276

 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 9/83 (10%)

Query: 191 GSERLRNKDGEKLHPT-----QKPEALLSRILVSSTKPGD----IILDPFFGSGTSGAVA 241
             E   N D  K + T     +    +  R L     P D    +ILD   GSG SG+V 
Sbjct: 10  PPEIFYNDDEAKKYSTNSRIIEIQVEMAERALELLALPDDDETRLILDIGCGSGLSGSVL 69

Query: 242 KKLRRSFIGIEMKQDYIDIATKR 264
           +     +IGI++ +  +DIA +R
Sbjct: 70  EDSDHMWIGIDIAKAMLDIAQER 92


>gi|145355280|ref|XP_001421892.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582131|gb|ABP00186.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 469

 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 48/129 (37%), Gaps = 6/129 (4%)

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
            DI+ R  +    F G+      E L W+  S   +  +            V  +SD   
Sbjct: 98  KDILKRVGDLGLPFLGKADLKNPEHLFWSVVSDTKETPSLPQTPRHCFFGRVVGQSDR-- 155

Query: 187 PICSGSERLRNKDGEKLHPTQKPEAL-LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
              S  +R   K    L PT     + L     +  +PG +ILDPF G+G+    A    
Sbjct: 156 ---STLKRYDLKQRSYLGPTSMDAEMALLMANFAQARPGGVILDPFCGTGSMLVAAAHYG 212

Query: 246 RSFIGIEMK 254
              +GI++ 
Sbjct: 213 AMTMGIDID 221



 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 75/208 (36%), Gaps = 23/208 (11%)

Query: 23  IIKGNSISVLEKLPAKSVDL------IFADPPYNLQLNGQLYR------PDHSLVDAVTD 70
           +  G+    L  LP +   L      I ADPPY ++  G+          D+++ + + +
Sbjct: 265 LFVGD----LHALPTRRFGLEGTLQGIVADPPYGVRAGGRKSGGRKPLPEDYAIPEEMRE 320

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNG--TLWVIGSYHNIFRIGTMLQNLNFWILND 128
           +    ++   +       +    R L   G  T ++ GS  +  R    +++L       
Sbjct: 321 THIPSTAPYPFAEMNDDLMELAARFLSIGGRLTFFLPGSTEDAER---EIRDLPAHPALR 377

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE-DVQMRSDWLIP 187
           + W          GRR    +E +         K       A  A++E D+  R   L+ 
Sbjct: 378 LRWHSLETFNQIWGRRLVT-YEKIHPYDVEVARKAREDAVAARAASDEPDLIERMRALVY 436

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSR 215
               +E  R K  EK H    P+AL  R
Sbjct: 437 DQVPAEAKRRKRYEKFHGVPPPDALTER 464


>gi|157961769|ref|YP_001501803.1| 23S rRNA m(2)G2445 methyltransferase [Shewanella pealeana ATCC
           700345]
 gi|229560178|sp|A8H3Y1|RLML_SHEPA RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|157846769|gb|ABV87268.1| putative RNA methylase [Shewanella pealeana ATCC 700345]
          Length = 711

 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 44/140 (31%), Gaps = 25/140 (17%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N +   K + ++ N +  +++   +  DLIF DPP         +     + D+     D
Sbjct: 592 NGLNSDKYQFVQANCLQWMKRTHDR-FDLIFIDPP--------TFSNSKRMEDSFDVERD 642

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                        A L    ++L P G +    +          L+     I N      
Sbjct: 643 HV-----------AMLSDVFKLLNPGGEIIFSNNKRKFKMEIAALEAQGMSIKN-----I 686

Query: 134 SNPMPNFRGRRFQNAHETLI 153
            N       +R  + H T +
Sbjct: 687 DNQTLPLDFKRNPHIHNTWL 706


>gi|66564535|ref|XP_623810.1| PREDICTED: uncharacterized methyltransferase WBSCR22-like [Apis
           mellifera]
          Length = 275

 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 210 EALLSRILVSSTKPGD---IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           E +  R L     P D   ++LD   GSG SG V +     +IGI++ +  ++IA +R
Sbjct: 34  EQMCRRALELLLLPHDKSILLLDIGCGSGLSGNVIENYGHIWIGIDISRAMLEIALER 91


>gi|71066025|ref|YP_264752.1| ribosomal protein L11 methyltransferase [Psychrobacter arcticus
           273-4]
 gi|123648323|sp|Q4FRP0|PRMA_PSYA2 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|71039010|gb|AAZ19318.1| LSU ribosomal protein L11P methyltransferase [Psychrobacter
           arcticus 273-4]
          Length = 308

 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 9/104 (8%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL----HPTQKPEALLSR 215
             + +  NY  ++ AN D+ +  +WL P    +  +    G       H T +   L   
Sbjct: 98  WEREWMSNYKPIECAN-DLWIVPNWLTPPNPEATNIIMDPGLAFGTGYHATTR---LCLD 153

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
            L        +++D   GSG  G  A  L  R    +++    +
Sbjct: 154 WLTEQDLKDKVVIDYGCGSGILGIAALLLGARHVYAVDIDPQAV 197


>gi|329121596|ref|ZP_08250217.1| cyclopropane-fatty-acyl-phospholipid synthase [Dialister
           micraerophilus DSM 19965]
 gi|327468751|gb|EGF14228.1| cyclopropane-fatty-acyl-phospholipid synthase [Dialister
           micraerophilus DSM 19965]
          Length = 388

 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 70/191 (36%), Gaps = 14/191 (7%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA-VAK 242
           WL P  S S      + + L   Q+   +   +     + G  ILD   G G      AK
Sbjct: 126 WLDPSMSYSCAYFKNEKDTLEEAQRN-KVHYILEKLHLEKGMKILDIGCGWGYLLIEAAK 184

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR-VAFNLLVERGLI-Q 300
           K   S  G  + ++      +RI ++     + + ++  +  E + + F+ +V  G+I  
Sbjct: 185 KYGVSGYGCTLSKEQCKKGRERIKALGLEDKVHIDLVDYRDLESKGLMFDRIVSVGMIEH 244

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
            G+   +     +  +  DG +        +H +     G  + N W   Y    G L S
Sbjct: 245 VGRSNYSLYMETANHLLCDGGVFL------LHYISGNTEG--SKNPWMRKYIFPGGTLPS 296

Query: 361 INTLRILVRKE 371
           +    ++ R  
Sbjct: 297 LRE--MIYRAY 305


>gi|308049600|ref|YP_003913166.1| 23S rRNA m(2)G-2445 methyltransferase [Ferrimonas balearica DSM
           9799]
 gi|307631790|gb|ADN76092.1| 23S rRNA m(2)G-2445 methyltransferase [Ferrimonas balearica DSM
           9799]
          Length = 700

 Score = 41.5 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 22/103 (21%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N + N +   + + I+ + ++ LE  P +  D IF DPP         +     +     
Sbjct: 577 NFSLNRLRGREHRFIQADCLAWLEACPEQ-FDFIFIDPP--------TFSNSKRMEKTFD 627

Query: 70  DSWDKFSSFEAYDAFTRAWL-LACRRVLKPNGTLWVIGSYHNI 111
              D              WL    +R+L P G +    +  + 
Sbjct: 628 VQRD------------HLWLMTQLKRILAPGGEILFSNNKRHF 658


>gi|213582643|ref|ZP_03364469.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 150

 Score = 41.5 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPP 48
            ++I+ + +  L +   +  DLIF DPP
Sbjct: 88  HRLIQADCLGWLRE-ANEQFDLIFIDPP 114


>gi|32266933|ref|NP_860965.1| type I restriction/modification enzyme [Helicobacter hepaticus ATCC
           51449]
 gi|32262985|gb|AAP78031.1| type I restriction/modification enzyme [Helicobacter hepaticus ATCC
           51449]
          Length = 1164

 Score = 41.5 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 7/91 (7%)

Query: 17  FEWKDKIIKGNSISVLEK-----LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
            + K +II  +++  +++        +S DLI ++PPY++   G L   D +L       
Sbjct: 519 PKSKSQIIFQDALDFIKENYKDEFENESFDLILSNPPYSV--KGFLSNLDKALNTFSLSQ 576

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTL 102
                S++  +A    ++   ++ LK  G  
Sbjct: 577 SIDSKSYDKNNAIECFFVERAKQFLKEGGIF 607


>gi|290473848|ref|YP_003466722.1| putative methyltransferase [Xenorhabdus bovienii SS-2004]
 gi|289173155|emb|CBJ79928.1| putative methyltransferase with S-adenosyl-L-methionine-dependent
           methyltransferase domain [Xenorhabdus bovienii SS-2004]
          Length = 705

 Score = 41.5 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 47/140 (33%), Gaps = 22/140 (15%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++I+ + +  L +   +  DLIF DPP         +     + D+  
Sbjct: 579 NLQANGLSGRQHRLIQADCLGWLAQ-SREQFDLIFIDPP--------TFSNSKRMEDSFD 629

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
              D  +            +   + +L+  GTL    +          L  L   ++ + 
Sbjct: 630 VQRDHIT-----------LMKQLKCLLRRGGTLMFSNNKRGFKMDFAELDKLG--LVAEE 676

Query: 130 VWRKSNPMPNFRGRRFQNAH 149
           +  K+      R R+  N  
Sbjct: 677 ITEKTVSQDFARNRQIHNCW 696


>gi|219848035|ref|YP_002462468.1| DNA methyltransferase [Chloroflexus aggregans DSM 9485]
 gi|219542294|gb|ACL24032.1| DNA methyltransferase [Chloroflexus aggregans DSM 9485]
          Length = 416

 Score = 41.5 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 21/39 (53%)

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +++  +    ILDPF G+GT+   A +     +GI++  
Sbjct: 40  ILNRERGAFRILDPFAGTGTTVLCAAEQGMYGVGIDINP 78


>gi|75760812|ref|ZP_00740829.1| Cytosine (N4) specific methyltransferase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228905389|ref|ZP_04069344.1| Modification methylase [Bacillus thuringiensis IBL 4222]
 gi|74491698|gb|EAO54897.1| Cytosine (N4) specific methyltransferase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228854209|gb|EEM98912.1| Modification methylase [Bacillus thuringiensis IBL 4222]
          Length = 428

 Score = 41.5 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 21/78 (26%), Gaps = 1/78 (1%)

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKP-GDIILDPFFGSGT 236
                +                G   +P +    +    +          ILDPF GSGT
Sbjct: 13  PMCIENGKTYAIKQPNPNSYTHGYFKYPCKFIPEIPRWFMNKYLGEGKASILDPFSGSGT 72

Query: 237 SGAVAKKLRRSFIGIEMK 254
           +   +        G E+ 
Sbjct: 73  TLLESIINGHDAYGTEID 90


>gi|326791223|ref|YP_004309044.1| ribosomal protein L11 methyltransferase [Clostridium lentocellum
           DSM 5427]
 gi|326541987|gb|ADZ83846.1| ribosomal protein L11 methyltransferase [Clostridium lentocellum
           DSM 5427]
          Length = 322

 Score = 41.5 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 45/298 (15%), Positives = 85/298 (28%), Gaps = 24/298 (8%)

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           D F  F  Y   T  ++      LK           +  F +   +Q        +I   
Sbjct: 36  DDFDEFLTYQGKTWDYMDEDVEKLKD-------CPTNIKFYLAENMQ--GQETFKEIKKT 86

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
               M +        + E  +              Y       E   ++  W     + +
Sbjct: 87  LER-MKDSSEGADYGSLEMSLGNVNEEDWANNWKKYFKPFEVGEKFVIKPTWESYNENTN 145

Query: 193 ERLRNKDGEKLHPTQKPE--ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFI 249
             +   D      T +     L    L    KP   +LD   GSG        L  +   
Sbjct: 146 RMILEIDPNSSFGTGQHYTTQLCIEQLEQIIKPDAKVLDMGCGSGILSIATLLLGAQHVT 205

Query: 250 GIEMKQDYIDIATKR-IASVQPLGNIELTVLTGKRTEPRVAF-----NLLVERGLIQPGQ 303
            +++ Q+ +DIA    I +    G   L        E  V         +V   ++    
Sbjct: 206 AVDIDQNSVDIAKDNFIQNGMKQGQFALHCGNVIADEALVKIIGQGCYDVVVANIV--AD 263

Query: 304 ILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSI 361
           ++   +  +   +   GTLI+   +G   R        ++  G+   +  +  +  +I
Sbjct: 264 VIIGMKELLKDFLKPGGTLIASGIIGD--RSEEVKEHLKSV-GFTVKHMTEKNDWVAI 318


>gi|229062010|ref|ZP_04199336.1| Ribosomal protein L11 methyltransferase [Bacillus cereus AH603]
 gi|228717319|gb|EEL68992.1| Ribosomal protein L11 methyltransferase [Bacillus cereus AH603]
          Length = 312

 Score = 41.5 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 57/179 (31%), Gaps = 25/179 (13%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-------------HPTQKPEALL 213
           ++             SD    + +  E   +   EK+             HPT     + 
Sbjct: 109 DWATAWKKYYHPVQISDTFTIVPTWEEYTPSSPDEKIIELDPGMAFGTGTHPTTT---MC 165

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATK--RIASVQP 270
            R L  + +PGD ++D   GSG     A KL  + +   ++    ++ A    R+     
Sbjct: 166 IRALEKTVQPGDTVIDVGTGSGVLSIAAAKLGAASVQAYDLDPVAVESAEMNVRLNKTDD 225

Query: 271 LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELG 329
           + N+    L      P      L+   L+    +L          V   G  I+   +G
Sbjct: 226 IVNVGQNSLLEGIEGPV----DLIVANLLAEIILLFPEDAARV--VKPGGLFITSGIIG 278


>gi|145298973|ref|YP_001141814.1| 23S rRNA m(2)G2445 methyltransferase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|229560164|sp|A4SME4|RLML_AERS4 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|142851745|gb|ABO90066.1| putative RNA methylase [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 719

 Score = 41.5 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 22/140 (15%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   NS+   + K ++ + +  L +   +  DLIF DPP         +     + ++  
Sbjct: 591 NMRLNSLVGRQHKFVQADCLKWLSEADDQY-DLIFIDPP--------TFSNSKRMDESFD 641

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
              D               +   +R+L  +GTL    +  +       L+       N  
Sbjct: 642 VQRDHL-----------LLMQHLKRLLAADGTLVFSNNKRHFKMDLAGLEAAGLKAQN-- 688

Query: 130 VWRKSNPMPNFRGRRFQNAH 149
           +  K+ P    R +   N  
Sbjct: 689 ITSKTRPKDFERNQHIHNCW 708


>gi|332652543|ref|ZP_08418288.1| ribosomal protein L11 methyltransferase [Ruminococcaceae bacterium
           D16]
 gi|332517689|gb|EGJ47292.1| ribosomal protein L11 methyltransferase [Ruminococcaceae bacterium
           D16]
          Length = 323

 Score = 41.5 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 51/155 (32%), Gaps = 25/155 (16%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYIDIA--------- 261
           L    + + TK GD +LD   GSG     A  L     + +++    +D+A         
Sbjct: 167 LCLEGVEAHTKAGDDVLDLGCGSGILSIAALVLGASHALAVDIDPKAVDVAYENAALNGI 226

Query: 262 -TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
              R  +V+    +    L  +  + R     LV   ++    ++      +   +  DG
Sbjct: 227 GKDRY-TVRAGDVLSDAALAAEIAQQRYP---LVLANIV--ADVIIPLSAQVPNLLTEDG 280

Query: 321 T-LISGTELGSIHRV-GAKVSG------SETCNGW 347
             L SG      H V  A              NGW
Sbjct: 281 IFLCSGIIDTRAHEVEAALAKNGLKVTRKREKNGW 315


>gi|209543187|ref|YP_002275416.1| hypothetical protein Gdia_1018 [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209530864|gb|ACI50801.1| protein of unknown function DUF1156 [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 968

 Score = 41.5 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
           IL    +    + DPF G G+    A++L     G ++    + +  K +  + P
Sbjct: 134 ILRYLQEKAPPVYDPFSGGGSIPLEAQRLGLRAYGSDLNPVAV-LIGKALVEIPP 187


>gi|307136521|ref|ZP_07495877.1| putative methylation subunit, type III restriction-modification
           system [Escherichia coli H736]
          Length = 513

 Score = 41.5 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 44/143 (30%), Gaps = 18/143 (12%)

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             R R  + A E  +WA          +     + A +    +S W+ P    S      
Sbjct: 159 YGRDRVIREAKEGTVWAKRIKGEIQIHY-----RQAGKPKMRKSVWIGPKLDASTYGSEL 213

Query: 199 DGEKLHPTQKPEALLS------RILVSSTK-PGDIILDPFFGSGTSGAVAKKLR------ 245
                + TQ   +           L S +       LD F GSGT+G     +       
Sbjct: 214 LNSLFNVTQINFSFPKSIYAVKECLESLSNSKYAHFLDYFAGSGTTGHAVVDMNRDDNGF 273

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R F  +E  + +  +   R+   
Sbjct: 274 RKFSLVEQGEYFYSVTLPRVKKA 296


>gi|167628048|ref|YP_001678548.1| 23S rRNA m(2)G2445 methyltransferase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|229560155|sp|B0U0U4|RLML_FRAP2 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|167598049|gb|ABZ88047.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 718

 Score = 41.5 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 42/138 (30%), Gaps = 24/138 (17%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N++   K   I+ + IS L+   ++  D+IF DPP                  + +   D
Sbjct: 601 NNLDIKKHNFIQADCISWLKS-NSEKFDVIFLDPP----------------TFSNSKRMD 643

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                +         +      LK +G L+   +Y        M Q +      + + + 
Sbjct: 644 DILDIQRDHELL---INLAMDSLKKDGVLYFSNNYRRF----KMSQEIIAKFNCENIDKV 696

Query: 134 SNPMPNFRGRRFQNAHET 151
                    +   N  E 
Sbjct: 697 CLSRDFLSNKNIHNCWEI 714


>gi|223846|prf||1002214B methylase,modification
          Length = 171

 Score = 41.5 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 57/151 (37%), Gaps = 23/151 (15%)

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGS-YHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           +  D   + ++    RVL PNG L++    +H +  +   L+N     + D++      +
Sbjct: 19  QMTDEIIQQFINEFERVLLPNGYLFLWVDKFHLVEGVKPWLENTPSLSVVDMLTWDKQKI 78

Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
               G R +   E L+     PK    T+                     + +  +    
Sbjct: 79  G--MGYRTRRRSEYLVVIQKEPKKAKITWT--------------------LHNIPDVWAE 116

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
           K   K H   KP  +  ++++++T+ GD+I 
Sbjct: 117 KLQSKPHTHSKPIEMQKQLILATTQEGDLIW 147


>gi|289626534|ref|ZP_06459488.1| DNA methylase N-4/N-6 [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|330869771|gb|EGH04480.1| DNA methylase N-4/N-6 [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 621

 Score = 41.5 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 22/37 (59%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           +PT+     ++  + + T+PG  +LD F GSGT+G  
Sbjct: 50  YPTKISPEAIAVYIAAHTQPGATVLDAFAGSGTTGIA 86


>gi|305663153|ref|YP_003859441.1| protein of unknown function DUF1156 [Ignisphaera aggregans DSM
           17230]
 gi|304377722|gb|ADM27561.1| protein of unknown function DUF1156 [Ignisphaera aggregans DSM
           17230]
          Length = 1005

 Score = 41.5 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPY 49
           K +++  ++ +VL +L  +  DLI  DPPY
Sbjct: 554 KVRVLLDDA-TVLSRLGGERFDLIVTDPPY 582


>gi|229013532|ref|ZP_04170666.1| Ribosomal protein L11 methyltransferase [Bacillus mycoides DSM
           2048]
 gi|228747769|gb|EEL97638.1| Ribosomal protein L11 methyltransferase [Bacillus mycoides DSM
           2048]
          Length = 312

 Score = 41.5 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 56/179 (31%), Gaps = 25/179 (13%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-------------HPTQKPEALL 213
           ++             SD    + +  E   +   EK+             HPT     + 
Sbjct: 109 DWATAWKKYYHPVQISDTFTIVPTWEEYTPSSPDEKIIELDPGMAFGTGTHPTTT---MC 165

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATK--RIASVQP 270
            R L  +  PGD ++D   GSG     A KL  + +   ++    ++ A    R+     
Sbjct: 166 IRALEKTVHPGDTVIDVGTGSGVLSIAAAKLGAASVQAYDLDPVAVESAEMNVRLNKTDD 225

Query: 271 LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELG 329
           + N+    L      P      L+   L+    +L          V   G  I+   +G
Sbjct: 226 IVNVGQNSLLEGIEGPV----DLIVANLLAEIILLFPEDAARV--VKPGGLFITSGIIG 278


>gi|148266300|ref|YP_001233006.1| ribosomal protein L11 methyltransferase [Geobacter uraniireducens
           Rf4]
 gi|189037696|sp|A5G9G5|PRMA_GEOUR RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|146399800|gb|ABQ28433.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase [Geobacter
           uraniireducens Rf4]
          Length = 315

 Score = 41.5 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 42/121 (34%), Gaps = 12/121 (9%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGD---------IILDPFFGSGTSGAVAKKLR-RSFI 249
           G   HPT K    +  ++     P +          +LD   GSG     A KL      
Sbjct: 145 GTGAHPTTKMCLEVLEMIFYGEGPYNGDGKHLDPVTVLDVGTGSGVLSIAAAKLGAERIT 204

Query: 250 GIEMKQDYIDIATKRIA--SVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTN 307
            I++  D + +A + +A     PL  +  T L        +    ++   L++    L +
Sbjct: 205 AIDIDADAVSVAEENLALNDALPLVAVSTTALQDVPGRYDIVLANILAEELVRLAPELVD 264

Query: 308 A 308
            
Sbjct: 265 R 265


>gi|241668604|ref|ZP_04756182.1| 23S rRNA m(2)G2445 methyltransferase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254877138|ref|ZP_05249848.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843159|gb|EET21573.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 718

 Score = 41.5 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 42/138 (30%), Gaps = 24/138 (17%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N++   K   I+ + IS L+   ++  D+IF DPP                  + +   D
Sbjct: 601 NNLDIKKHNFIQADCISWLKS-NSEKFDVIFLDPP----------------TFSNSKRMD 643

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                +         +      LK +G L+   +Y        M Q +      + + + 
Sbjct: 644 DILDIQRDHELL---INLAMDSLKKDGVLYFSNNYRRF----KMSQEIIAKFNCENIDKI 696

Query: 134 SNPMPNFRGRRFQNAHET 151
                    +   N  E 
Sbjct: 697 CLSRDFLSNKNIHNCWEI 714


>gi|302837301|ref|XP_002950210.1| hypothetical protein VOLCADRAFT_90588 [Volvox carteri f.
           nagariensis]
 gi|300264683|gb|EFJ48878.1| hypothetical protein VOLCADRAFT_90588 [Volvox carteri f.
           nagariensis]
          Length = 161

 Score = 41.5 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 203 LHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI--D 259
            +PT  P+ ++SR+L +++  PGD + D   G G     A +     +G E+  + +   
Sbjct: 34  FYPT--PDTVISRVLDLTAVGPGDCLYDLGCGDGRVLLAAARRGARCVGFELDPELVRDA 91

Query: 260 IATKRIASVQPL 271
           +   R A ++ L
Sbjct: 92  VTAARTAGLESL 103


>gi|153941224|ref|YP_001391790.1| putative methyltransferase [Clostridium botulinum F str. Langeland]
 gi|152937120|gb|ABS42618.1| RNA methyltransferase, RsmD family [Clostridium botulinum F str.
           Langeland]
 gi|295319816|gb|ADG00194.1| RNA methyltransferase, RsmD family [Clostridium botulinum F str.
           230613]
          Length = 185

 Score = 41.5 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSV--DLIFADPPY 49
           S+   L     +N  FE   K    ++ S LE+   KS+  DLIF DPPY
Sbjct: 74  SETYPLLRENIKNLKFEDLCKSFNMDAYSALEEFARKSIVFDLIFIDPPY 123


>gi|72006191|ref|XP_786791.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115975044|ref|XP_001176463.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 283

 Score = 41.5 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 212 LLSRILVSSTKPGDI---ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           +  R +     P D    ILD   GSG SG    +    ++G+++    +DIA +R
Sbjct: 38  MSERAIELLALPEDTPSFILDIGCGSGLSGEALTEQGHHWVGMDISSSMLDIAIER 93


>gi|89894032|ref|YP_517519.1| hypothetical protein DSY1286 [Desulfitobacterium hafniense Y51]
 gi|219668416|ref|YP_002458851.1| methyltransferase type 11 [Desulfitobacterium hafniense DCB-2]
 gi|89333480|dbj|BAE83075.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538676|gb|ACL20415.1| Methyltransferase type 11 [Desulfitobacterium hafniense DCB-2]
          Length = 301

 Score = 41.5 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSG-TSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           HP   P A +  + V     GD ILD   GSG T+  +AK      IG+++    I+ A 
Sbjct: 33  HPGGFP-ATVKNLEVMDVNDGDFILDAGCGSGLTACYLAKNKGCKIIGVDINSQMIEKAR 91

Query: 263 KR 264
           +R
Sbjct: 92  QR 93


>gi|168703158|ref|ZP_02735435.1| putative RNA methylase [Gemmata obscuriglobus UQM 2246]
          Length = 368

 Score = 41.1 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 56/171 (32%), Gaps = 11/171 (6%)

Query: 107 SYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
            + ++F++   L+          +V +        R        E L    P        
Sbjct: 97  DWDHLFKLHHKLRPKTKGKPTYHLVCQMQGEHGFRRADARAAFIEGLAGKIPHGWHYSNE 156

Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
             +  +              +   +   R    D      + +P    + + ++   PG 
Sbjct: 157 NAWLEIWLTIYSKTAVCGVRLSDRTMRHRAYKLDHVAA--SLRPTVAAAMVRLAGIGPGM 214

Query: 226 IILDPFFGSGTSGA----VAKKLRR----SFIGIEMKQDYIDIATKRIASV 268
            +LDPF G+GT  A    VA+K  R      IG ++  + + + ++ +  V
Sbjct: 215 TVLDPFCGAGTILAEALDVAEKRSRGGEIRVIGGDIDPNAVFVTSQNLEHV 265


>gi|312075940|ref|XP_003140639.1| methyltransferase [Loa loa]
 gi|307764196|gb|EFO23430.1| methyltransferase [Loa loa]
          Length = 278

 Score = 41.1 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 4/81 (4%)

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII----LDPFFGSGTSGAVAK 242
           P    ++    K  E  H  +    +  R +     P D +    LD   GSG SG V  
Sbjct: 10  PELYYNDVQAAKYSENSHIVEIQRHMAERAIELLALPDDDVSRLLLDVGCGSGLSGEVIT 69

Query: 243 KLRRSFIGIEMKQDYIDIATK 263
           +   ++IG+++ +  + +A  
Sbjct: 70  EKGHNWIGVDISEAMLKVAID 90


>gi|291299112|ref|YP_003510390.1| hypothetical protein Snas_1594 [Stackebrandtia nassauensis DSM
           44728]
 gi|290568332|gb|ADD41297.1| protein of unknown function DUF1156 [Stackebrandtia nassauensis DSM
           44728]
          Length = 920

 Score = 41.1 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           IL S+      ILDPF G G+    AK+L       ++    + +  K +  + P  + +
Sbjct: 104 ILNSTNDYPPPILDPFAGGGSIPLEAKRLGLEAYASDLNPVAV-LINKALIELPPKFHGQ 162

Query: 276 LTVLTG-KRTEPRV 288
           L V  G   +E RV
Sbjct: 163 LPVFPGLADSEFRV 176


>gi|208779379|ref|ZP_03246725.1| ribosomal protein L11 methyltransferase [Francisella novicida FTG]
 gi|254374395|ref|ZP_04989877.1| 50S ribosomal protein L11 [Francisella novicida GA99-3548]
 gi|151572115|gb|EDN37769.1| 50S ribosomal protein L11 [Francisella novicida GA99-3548]
 gi|208745179|gb|EDZ91477.1| ribosomal protein L11 methyltransferase [Francisella novicida FTG]
          Length = 281

 Score = 41.1 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 74/224 (33%), Gaps = 29/224 (12%)

Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
           Y N   I T++ N+     N I                  ++E +           + ++
Sbjct: 47  YENHHDIATIIANIKQKFENIIESEI--------------SYEII---KDQQWEAAWLYD 89

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSSTKPGD 225
           Y+ ++  N ++ +  +W  P           D          E   +    L        
Sbjct: 90  YEPIEIGN-NIVVYPNWRQPPQDNKHTYIIVDPSIAFGCGNHETTKMCLEWLEQHVSKDT 148

Query: 226 IILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            +LD   G+G     A KL   +  GI++  + I+ +   I + Q     + T  +    
Sbjct: 149 TVLDYGCGTGVLAIGAVKLGAKYAEGIDIDPNSIESS---IKNAQENDVTDKTHFSDN-- 203

Query: 285 EPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTEL 328
            P   F+L+V         +L +  GNI+ ++   G L     +
Sbjct: 204 PPTQQFDLVVANIF---SNVLISLVGNITTSLKKGGRLALSGII 244


>gi|292493568|ref|YP_003529007.1| methyltransferase type 11 [Nitrosococcus halophilus Nc4]
 gi|291582163|gb|ADE16620.1| Methyltransferase type 11 [Nitrosococcus halophilus Nc4]
          Length = 231

 Score = 41.1 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 214 SRILVSSTKPGDIILDPFFGSG-TSGAVAKKL-RRSFIGIEMKQDYIDIATKRIASVQPL 271
            +++         ILD   G+G ++ A+A +      +G+E++++Y++IA ++I  +  +
Sbjct: 39  RKMVKMMPPNPRRILDLACGTGISTLAIANRYPDCQVVGVELREEYLNIARRKIQKL-GV 97

Query: 272 GNIELTVLTGKRTEPRVAFNLL 293
            NIE  +   +    +  F+ +
Sbjct: 98  NNIEWVLSRAEDYRSKEPFDCI 119


>gi|323144389|ref|ZP_08078997.1| RNA methyltransferase, RsmD family [Succinatimonas hippei YIT
           12066]
 gi|322415842|gb|EFY06568.1| RNA methyltransferase, RsmD family [Succinatimonas hippei YIT
           12066]
          Length = 192

 Score = 41.1 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 43/105 (40%), Gaps = 8/105 (7%)

Query: 5   NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY-------NLQLNGQL 57
           N L++ +  N++     +++  ++++ L K      DLIF DPPY        ++L  + 
Sbjct: 83  NYLSLKDTINTLNSKNIQVLNLDALNFLNK-TDNKFDLIFLDPPYKSDLLNKAMELINER 141

Query: 58  YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL 102
              + + V  V  S     SF  ++ F+       +  L    + 
Sbjct: 142 NLLNKNAVLYVEYSSGNIKSFVGFECFSEQQNGQVKFALYKKSSF 186


>gi|282934675|ref|ZP_06339918.1| ribosomal protein L11 methyltransferase [Lactobacillus jensenii
           208-1]
 gi|281301250|gb|EFA93551.1| ribosomal protein L11 methyltransferase [Lactobacillus jensenii
           208-1]
          Length = 315

 Score = 41.1 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 20/157 (12%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI--EMKQDYI-----DIATKR 264
           L+   L  S      +LD   GSG     A KL    +    ++  + +     +IA  +
Sbjct: 165 LVMMALERSMTKPAKVLDVGTGSGILAIAASKLGAESVLATTDISDEAVTAANENIALNK 224

Query: 265 IASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLIS 324
           + +++ +    L  + GK          L+   ++   +IL +    ++  +  +G +I 
Sbjct: 225 LNNIKVIKANLLKNINGK--------FDLILANIL--AEILFDLIPELNDHLAPNGKIIF 274

Query: 325 GTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSI 361
                  +    KV  S   NG++     + G    +
Sbjct: 275 SGID---YLQAEKVKQSLAENGFSVKTTMQEGRWVCL 308


>gi|302669461|ref|YP_003829421.1| SAM-dependent methyltransferase [Butyrivibrio proteoclasticus B316]
 gi|302393934|gb|ADL32839.1| SAM-dependent methyltransferase [Butyrivibrio proteoclasticus B316]
          Length = 214

 Score = 41.1 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 13/106 (12%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFAD-PPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           E + KI++G+     +   A S D +    PPY +  +G         +       D   
Sbjct: 64  EARVKIVQGDIKEADQLFEAASFD-VVTSNPPYMIGGHGLQNPDGPKAIARHEIKCD--- 119

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                       + A  R LK  G  +++     +  I  ++    
Sbjct: 120 --------LEDVIKAAARCLKSGGKFYMVHRPFRLTEIMVLMHEYK 157


>gi|78044003|ref|YP_360292.1| putative methyltransferase [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996118|gb|ABB15017.1| putative methyltransferase [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 184

 Score = 41.1 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN 54
           K I G+   +L  +  +  DLIF DPPY     
Sbjct: 94  KAILGDIFKILPHI-NEKFDLIFLDPPYGYGFE 125


>gi|295099216|emb|CBK88305.1| Predicted O-methyltransferase [Eubacterium cylindroides T2-87]
          Length = 193

 Score = 41.1 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 29/48 (60%), Gaps = 6/48 (12%)

Query: 3   QKNSLAINENQNSIFE--WKDKI--IKGNSISVLEKLPAKSVDLIFAD 46
           ++N   I + + +I +  ++++I  I+G+++ V  +LP +  D IF D
Sbjct: 66  ERNPEMIEQAKINIKQSGYQNQITLIEGDALEV--ELPDQKFDCIFID 111


>gi|117618670|ref|YP_856808.1| 23S rRNA m(2)G2445 methyltransferase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560077|gb|ABK37025.1| methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 720

 Score = 41.1 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 22/140 (15%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   NS+   + K ++ + +  L +   +  DLIF DPP         +     + ++  
Sbjct: 594 NMRLNSLVGREHKFVQADCLKWLSEADDQY-DLIFIDPP--------TFSNSKRMDESFD 644

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
              D               +   +R+L   GTL    +  +       L+ +     N  
Sbjct: 645 VQRDHL-----------LLMQHLKRLLAAGGTLVFSNNKRHFKMDLAGLEAIGLKAQN-- 691

Query: 130 VWRKSNPMPNFRGRRFQNAH 149
           +  K+ P    R +   N  
Sbjct: 692 ITGKTRPKDFERNQHIHNCW 711


>gi|229889502|sp|A0KKK7|RLML_AERHH RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
          Length = 717

 Score = 41.1 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 22/140 (15%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   NS+   + K ++ + +  L +   +  DLIF DPP         +     + ++  
Sbjct: 591 NMRLNSLVGREHKFVQADCLKWLSEADDQY-DLIFIDPP--------TFSNSKRMDESFD 641

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
              D               +   +R+L   GTL    +  +       L+ +     N  
Sbjct: 642 VQRDHL-----------LLMQHLKRLLAAGGTLVFSNNKRHFKMDLAGLEAIGLKAQN-- 688

Query: 130 VWRKSNPMPNFRGRRFQNAH 149
           +  K+ P    R +   N  
Sbjct: 689 ITGKTRPKDFERNQHIHNCW 708


>gi|206968050|ref|ZP_03229006.1| conserved hypothetical protein [Bacillus cereus AH1134]
 gi|206736970|gb|EDZ54117.1| conserved hypothetical protein [Bacillus cereus AH1134]
          Length = 229

 Score = 41.1 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 57/160 (35%), Gaps = 24/160 (15%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L  +  E  +    P  LL  I     +    +LD    SG  GA  K+      GIE  
Sbjct: 8   LYEEKSEHYYNAANP-NLLKHIKKEWKE----VLDIGCSSGALGAAIKENGTRVSGIEAF 62

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNA---QG 310
            +  + A +R+  V  LG+IE   L  +  +   V F  ++E         L +      
Sbjct: 63  PEAAEKAKERLDHVI-LGDIEKIDLPYEEGQFDCVIFGDVLEH--------LFDPWAVIE 113

Query: 311 NISATVCADGTLISGTELGSIHRVGAKVSGSETCNG-WNF 349
            +   +  +G +++     SI  V      +    G W +
Sbjct: 114 KVKPYIKQNGVILA-----SIPNVAHISVLAPLLAGNWTY 148


>gi|304383992|ref|ZP_07366448.1| site-specific DNA-methyltransferase (cytosine-N(4)-specific)
           [Prevotella marshii DSM 16973]
 gi|304334884|gb|EFM01158.1| site-specific DNA-methyltransferase (cytosine-N(4)-specific)
           [Prevotella marshii DSM 16973]
          Length = 414

 Score = 41.1 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 12/77 (15%)

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ-----------DY-IDIATKRIASVQPLG 272
           ++ILDP+ GSGT+   A     + +G ++              Y  D   K+   +Q   
Sbjct: 50  ELILDPYMGSGTTLVEASLAGINSVGTDLNPLARLMGKVKTTHYNYDSILKQFREIQAEL 109

Query: 273 NIELTVLTGKRTEPRVA 289
                    +R   R++
Sbjct: 110 VFFSEDKVIERNFDRIS 126



 Score = 36.5 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 15/51 (29%), Gaps = 4/51 (7%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           +    VD++   PPY        Y           + W  F + +  D   
Sbjct: 238 IKDGDVDMVVTSPPYGDSRTTVAYGQ----FSRWANEWFNFDNAKDLDNLL 284


>gi|303388946|ref|XP_003072706.1| putative methyltransferase [Encephalitozoon intestinalis ATCC
           50506]
 gi|303301848|gb|ADM11346.1| putative methyltransferase [Encephalitozoon intestinalis ATCC
           50506]
          Length = 363

 Score = 41.1 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 21/53 (39%)

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
             ILV   + GD++ DPF G G     A K        ++    I+   K I 
Sbjct: 197 RMILVKKFQVGDVVCDPFCGVGPVSLAALKKGCRVYSNDLNSHAIECLRKSIK 249


>gi|283956581|ref|ZP_06374060.1| LOW QUALITY PROTEIN: putative cyclopropane-fatty-acyl-phospholipid
           synthase [Campylobacter jejuni subsp. jejuni 1336]
 gi|283791830|gb|EFC30620.1| LOW QUALITY PROTEIN: putative cyclopropane-fatty-acyl-phospholipid
           synthase [Campylobacter jejuni subsp. jejuni 1336]
          Length = 387

 Score = 41.1 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 69/188 (36%), Gaps = 16/188 (8%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG-TSGAVAK 242
           WL    S S     +    L+  Q    +   +     K G+ +LD   G G  S   A+
Sbjct: 123 WLDDTMSYSCAYFKEPNNTLYEAQIN-KIEHTLKKLDLKEGEKLLDIGCGWGWLSIMAAQ 181

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP- 301
           K     +GI + ++    A +R+  +     IE+ +   +  E    F+ +V  G+ +  
Sbjct: 182 KYGVKVVGITISEEQCKKAKERVKELGLEDKIEIRLQNYQDLEFENYFDKVVSVGMFEHV 241

Query: 302 -GQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
             + L      +   +   G+++       +H + A   G    N W   Y    G L S
Sbjct: 242 GKENLGLYFMKVKQVLKPGGSML-------LHSILAMFEGKT--NAWIDKYIFPGGYLPS 292

Query: 361 INTLRILV 368
              LR +V
Sbjct: 293 ---LREVV 297


>gi|218562795|ref|YP_002344574.1| cyclopropane-fatty-acyl-phospholipid synthase [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|112360501|emb|CAL35298.1| cyclopropane-fatty-acyl-phospholipid synthase [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|315926602|gb|EFV05983.1| cyclopropane-fatty-acyl-phospholipid synthase family protein
           [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 387

 Score = 41.1 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 69/188 (36%), Gaps = 16/188 (8%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG-TSGAVAK 242
           WL    S S     +    L+  Q    +   +     K G+ +LD   G G  S   A+
Sbjct: 123 WLDDTMSYSCAYFKEPNNTLYEAQIN-KIEHTLKKLDLKEGEKLLDIGCGWGWLSIMAAQ 181

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP- 301
           K     +GI + ++    A +R+  +     IE+ +   +  E    F+ +V  G+ +  
Sbjct: 182 KYGVKVVGITISEEQCKKAKERVKELGLEDKIEIRLQNYQDLEFENYFDKVVSVGMFEHV 241

Query: 302 -GQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
             + L      +   +   G+++       +H + A   G    N W   Y    G L S
Sbjct: 242 GKENLGLYFMKVKQVLKPGGSML-------LHSILAMFEGKT--NAWIDKYIFPGGYLPS 292

Query: 361 INTLRILV 368
              LR +V
Sbjct: 293 ---LREVV 297


>gi|225849233|ref|YP_002729397.1| hypothetical protein SULAZ_1430 [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643761|gb|ACN98811.1| conserved hypothetical protein [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 170

 Score = 41.1 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 13  QNSIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQL 57
           +     +++ K +  +++  L+   A S D+IFADPPY+ +   +L
Sbjct: 78  KKKAKNYQNAKFVVSDALKFLKT--ANSFDIIFADPPYDYKFYDKL 121


>gi|332656343|ref|YP_004301644.1| methyltransferase [Tetragenococcus muriaticus]
 gi|326324686|dbj|BAJ84511.1| methyltransferase [Tetragenococcus muriaticus]
          Length = 197

 Score = 41.1 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQL 57
           M + N+    +N     +  + IIKGN++  L  L       V LI+ DPPYN   +   
Sbjct: 88  MKKYNANG-EQNIIKFNDTDNLIIKGNNLIALHTLKERYAGKVKLIYIDPPYNTGGDSFK 146

Query: 58  YR 59
           Y 
Sbjct: 147 YN 148


>gi|310658499|ref|YP_003936220.1| RNA methyltransferase [Clostridium sticklandii DSM 519]
 gi|308825277|emb|CBH21315.1| Uncharacterized RNA methyltransferase CTC_01941 [Clostridium
           sticklandii]
          Length = 449

 Score = 41.1 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKR 264
           T   E L S +        DII D + G+GT G  V+ K     +GIE+ ++ ++ A + 
Sbjct: 289 THGAEVLYSAVKDMIGDKKDIIFDLYSGTGTIGITVSDKAN-KIVGIEIIEEAVEAAKEN 347

Query: 265 IAS 267
           I  
Sbjct: 348 IKK 350


>gi|307243294|ref|ZP_07525461.1| ribosomal protein L11 methyltransferase [Peptostreptococcus
           stomatis DSM 17678]
 gi|306493312|gb|EFM65298.1| ribosomal protein L11 methyltransferase [Peptostreptococcus
           stomatis DSM 17678]
          Length = 316

 Score = 41.1 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 5/113 (4%)

Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
                      Y       +++ ++ +W     SG + +   D      T   E   S  
Sbjct: 111 KEEDWANNWKQYYKPTRIGKNIVIKPEWEDYEPSGDDIVIRMDPGMAFGTGSHET-TSMC 169

Query: 217 LVSSTKPGD---IILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRI 265
           + +  K  D    + D   GSG  G VA KL  +  +GI++    + +A + I
Sbjct: 170 IANLEKYVDKDSTVFDIGCGSGILGIVAAKLGAKDVVGIDIDAVAVKVANENI 222


>gi|225851286|ref|YP_002731520.1| hypothetical protein PERMA_1756 [Persephonella marina EX-H1]
 gi|225645830|gb|ACO04016.1| conserved hypothetical protein [Persephonella marina EX-H1]
          Length = 152

 Score = 41.1 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 21/31 (67%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ 52
           K+I  ++I  L+    ++ D+IFADPPY+ +
Sbjct: 74  KVITADAIKFLKNYKKEAFDIIFADPPYDYK 104


>gi|297537252|ref|YP_003673021.1| 50S ribosomal protein L11 methyltransferase [Methylotenera sp. 301]
 gi|297256599|gb|ADI28444.1| ribosomal protein L11 methyltransferase [Methylotenera sp. 301]
          Length = 295

 Score = 41.1 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYI 258
           G   HPT     L  + L  +    D +LD   GSG     AKKL     IG ++    I
Sbjct: 143 GTGSHPTT---HLCLKWLTETVSQQDSVLDYGCGSGILAIAAKKLGASEVIGTDIDPQAI 199

Query: 259 D 259
            
Sbjct: 200 Q 200


>gi|229189404|ref|ZP_04316421.1| O-antigen biosynthesis protein [Bacillus cereus ATCC 10876]
 gi|228593995|gb|EEK51797.1| O-antigen biosynthesis protein [Bacillus cereus ATCC 10876]
          Length = 232

 Score = 41.1 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 57/160 (35%), Gaps = 24/160 (15%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L  +  E  +    P  LL  I     +    +LD    SG  GA  K+      GIE  
Sbjct: 11  LYEEKSEHYYNAANP-NLLKHIKKEWKE----VLDIGCSSGALGAAIKENGTRVSGIEAF 65

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNA---QG 310
            +  + A +R+  V  LG+IE   L  +  +   V F  ++E         L +      
Sbjct: 66  PEAAEKAKERLDHVI-LGDIEKIDLPYEEGQFDCVIFGDVLEH--------LFDPWAVIE 116

Query: 311 NISATVCADGTLISGTELGSIHRVGAKVSGSETCNG-WNF 349
            +   +  +G +++     SI  V      +    G W +
Sbjct: 117 KVKPYIKQNGVILA-----SIPNVAHISVLAPLLAGNWTY 151


>gi|281416249|ref|YP_003347598.1| DNA adenine methyltransferase [Enterococcus phage phiFL3A]
 gi|270209514|gb|ACZ64055.1| DNA adenine methyltransferase [Enterococcus phage phiFL3A]
 gi|270209582|gb|ACZ64122.1| DNA adenine methyltransferase [Enterococcus phage phiFL3B]
          Length = 444

 Score = 41.1 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 48/133 (36%), Gaps = 20/133 (15%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           I  +S+ + E +  +S DL+F  PPY    + ++Y  D   +  +        S+E ++ 
Sbjct: 278 ICDDSLDIDEHIENESQDLLFTCPPY---ADLEVYSDDERDISNM--------SYEEFEE 326

Query: 84  FTRAWLLACRRVLKPNG----TLWVIGSYHNIFR-----IGTMLQNLNFWILNDIVWRKS 134
                L    R LK N     T+  +      +R               +  ND++   +
Sbjct: 327 VYSEILKRSARKLKDNRFAVVTISDVRDKKGFYRDLTGLTKQAFSEEGLFFYNDMILLNT 386

Query: 135 NPMPNFRGRRFQN 147
                 R R+  N
Sbjct: 387 AGSAALRARQSMN 399


>gi|302550399|ref|ZP_07302741.1| phosphatidylethanolamine N-methyltransferase [Streptomyces
           viridochromogenes DSM 40736]
 gi|302468017|gb|EFL31110.1| phosphatidylethanolamine N-methyltransferase [Streptomyces
           viridochromogenes DSM 40736]
          Length = 223

 Score = 41.1 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 50/116 (43%), Gaps = 17/116 (14%)

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA---SVQPL 271
           R+          +LD   G+G+   +A +      G+++    + +A +++A   ++  +
Sbjct: 46  RLRGWLPGRAGDVLDLGCGTGSLSLLASEQGHRVTGVDLSPAMVALARRKLAGRDALFLV 105

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLI----QPGQILTNAQGNISATVCADGTLI 323
           G+     +  +R      F+ ++ R ++    +PG++L     + +  +   G L+
Sbjct: 106 GDAAQPPVGEQR------FDAVLVRHVLWALPEPGRVL----RHWAGLLRPGGRLV 151


>gi|170757382|ref|YP_001782037.1| putative methyltransferase [Clostridium botulinum B1 str. Okra]
 gi|169122594|gb|ACA46430.1| RNA methyltransferase, RsmD family [Clostridium botulinum B1 str.
           Okra]
          Length = 185

 Score = 41.1 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSV--DLIFADPPY 49
            +   L     +N  FE   K    ++ S LE+   KS+  DLIF DPPY
Sbjct: 74  PETYPLLRENIKNLKFEDLCKSFNMDAYSALEEFARKSIVFDLIFIDPPY 123


>gi|188991176|ref|YP_001903186.1| Putative methyltransferase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167732936|emb|CAP51132.1| Putative methyltransferase [Xanthomonas campestris pv. campestris]
          Length = 266

 Score = 41.1 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN 54
           ++++ +++  LE+ P   VDL+F DPP+   L 
Sbjct: 168 QVLQDDALRWLERAPTGQVDLVFVDPPFAAGLW 200


>gi|157150737|ref|YP_001449943.1| modification methylase [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|157075531|gb|ABV10214.1| modification methylase [Streptococcus gordonii str. Challis substr.
           CH1]
          Length = 419

 Score = 41.1 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 18/51 (35%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           +  G +  +L +    +VDLI   PPY        Y     L     D  D
Sbjct: 222 LYIGKAEEILSEFADGTVDLICTSPPYGDNSTTVTYGQYSMLPLYWIDKSD 272



 Score = 40.4 bits (93), Expect = 0.51,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 9/84 (10%)

Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL---LSRILVSSTKPGDIILDPF 231
           N+      D+   + +G  ++        +P      +   L +++ S  K    ILDPF
Sbjct: 8   NKKELNYWDFSDVVSTGIHKIS------AYPATMVPDMQNELIKLIKSEDKSVQNILDPF 61

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQ 255
            GSG +     K   + IGI++  
Sbjct: 62  HGSGVTLVEGMKNDLTPIGIDINP 85


>gi|153004472|ref|YP_001378797.1| putative RNA methylase [Anaeromyxobacter sp. Fw109-5]
 gi|152028045|gb|ABS25813.1| putative RNA methylase [Anaeromyxobacter sp. Fw109-5]
          Length = 206

 Score = 41.1 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 24/48 (50%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           PE + + + ++   PGD++ D   G G     A KL    +G+++  +
Sbjct: 63  PEVVDAMLRLAGVSPGDVVYDLGCGDGRIVIAAAKLGARAVGVDLDPE 110


>gi|21231829|ref|NP_637746.1| hypothetical protein XCC2392 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|21113544|gb|AAM41670.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 207

 Score = 41.1 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN 54
           ++++ +++  LE+ P   VDL+F DPP+   L 
Sbjct: 109 QVLQDDALRWLERAPTGQVDLVFVDPPFAAGLW 141


>gi|332678281|gb|AEE87410.1| Ribosomal protein L11 methyltransferase [Francisella cf. novicida
           Fx1]
          Length = 281

 Score = 41.1 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 85/257 (33%), Gaps = 31/257 (12%)

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
           F   E Y     A   +  R+ K +  + +   Y N   I T++ N+     N I     
Sbjct: 16  FDRIENYLFDNDA--GSVARIDKSDDIVSITVLYENHHDIATIIANIKQKFENIIESEI- 72

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
                        ++E +           + ++Y+ ++  N ++ +  +W  P       
Sbjct: 73  -------------SYELI---KDQQWEAAWLYDYEPIEIGN-NIVVYPNWRQPPQDNKHT 115

Query: 195 LRNKDGEKLHPTQKPE--ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GI 251
               D          E   +    L         +LD   G+G     A KL   +  GI
Sbjct: 116 YIIVDPSIAFGCGNHETTKMCLEWLEQHVSKDTTVLDYGCGTGVLAIGAVKLGAKYAEGI 175

Query: 252 EMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
           ++  + I+ +   I + Q     + T  +     P   F+L+V         +L +  GN
Sbjct: 176 DIDPNSIESS---IKNAQENDVTDKTHFSDN--PPTKQFDLVVANIF---SNVLISLVGN 227

Query: 312 ISATVCADGTLISGTEL 328
           I+ ++   G L     +
Sbjct: 228 ITTSLKKGGRLALSGII 244


>gi|38605120|sp|O86951|PRMA_THENE RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
          Length = 264

 Score = 41.1 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYI 258
           G  LHPT +   L    L    K GD ++D   G+G    VAKKL  S++  +++ +  +
Sbjct: 109 GTGLHPTTQMSVL---FLKKYLKKGDRVVDVGCGTGILAIVAKKLGASYVLAVDVDEQAV 165

Query: 259 DIATKRIAS 267
           ++A + +  
Sbjct: 166 EVAKENVQK 174


>gi|3282093|emb|CAA07516.1| hypothetical protein [Thermotoga neapolitana]
          Length = 258

 Score = 41.1 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYI 258
           G  LHPT +   L    L    K GD ++D   G+G    VAKKL  S++  +++ +  +
Sbjct: 103 GTGLHPTTQMSVL---FLKKYLKKGDRVVDVGCGTGILAIVAKKLGASYVLAVDVDEQAV 159

Query: 259 DIATKRIAS 267
           ++A + +  
Sbjct: 160 EVAKENVQK 168


>gi|229092375|ref|ZP_04223544.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus
           Rock3-42]
 gi|228690981|gb|EEL44749.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus
           Rock3-42]
          Length = 327

 Score = 41.1 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 78/214 (36%), Gaps = 12/214 (5%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
            + S    +K    +  A      +   +  WL    + S      + + L   Q    +
Sbjct: 33  YFKSKWNFSKQKNKDDIAHHYDIGNDFYKL-WLDETMTYSCAYFQNEQDSLTTAQ-HNKV 90

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
              +   + + GD +LD   G G    A AK+     +G+ + ++     ++RI   + L
Sbjct: 91  NHILKKLNLQKGDTLLDIGCGWGELITAAAKQYGVKAMGVTLSEEQYAKTSERIKQ-EGL 149

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLI-QPGQILTNAQGNISATVCADGTLISGTELGS 330
            ++    L   R      F+ +V  G+I   G+           T+  DG +        
Sbjct: 150 TDLVEVSLLDYRDIKNRKFDKIVSVGMIEHVGKNNITQYFETVNTLLNDGGISL------ 203

Query: 331 IHRVGAKVSGSETCNGWNFWYFEKLGELHSINTL 364
           +H + +  +G  T NGW   Y    G + ++N L
Sbjct: 204 LHCITSPANGGAT-NGWIEKYIFPGGYVPAVNEL 236


>gi|281422927|ref|ZP_06253926.1| modification methylase MunI [Prevotella copri DSM 18205]
 gi|281403019|gb|EFB33699.1| modification methylase MunI [Prevotella copri DSM 18205]
          Length = 241

 Score = 41.1 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 59/188 (31%), Gaps = 12/188 (6%)

Query: 30  SVLEKLPAKSVDLIFADPP--YNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
               +LP +  D+I+ DPP  Y  ++            D   D +   ++F+     T+ 
Sbjct: 43  EFYPELPEEKFDIIYCDPPWDYGGKMQFDKSSIKSENKDWKRDIFISAANFKYPTVKTKD 102

Query: 88  WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
            +    + +     L  +   +     G  L     +    + +       +  G+   +
Sbjct: 103 LMKIPIQNICAEDCLLFMWVTNPHLAQGIQLGQAWGFEYKTVGFVWDKC-NHNPGQYTLS 161

Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
             E  +        K          A N    +R           E L  K+ EK+ PTQ
Sbjct: 162 NCELCLIFKKGRIPKPR-------GARNVQQLVRVPRTEHSVKPIEVL--KNIEKMFPTQ 212

Query: 208 KPEALLSR 215
           K   L +R
Sbjct: 213 KKIELFAR 220


>gi|222529538|ref|YP_002573420.1| 50S ribosomal protein L11 methyltransferase [Caldicellulosiruptor
           bescii DSM 6725]
 gi|254782825|sp|B9MJY9|PRMA_ANATD RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|222456385|gb|ACM60647.1| ribosomal protein L11 methyltransferase [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 304

 Score = 41.1 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 42/113 (37%), Gaps = 5/113 (4%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEA--LLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
           W      G++ +   D      T   E+  L    +    KPG  +LD   GSG     A
Sbjct: 127 WEDYKAEGNKTIVKLDPGMAFGTGTHESTILCLEAIQKYVKPGMDVLDVGTGSGILAIAA 186

Query: 242 KK-LRRSFIGIEMKQDYIDIATK--RIASVQPLGNIELTVLTGKRTEPRVAFN 291
           KK L R  + +++ +  + +A +  R+  V+        V   +     V  N
Sbjct: 187 KKFLARRVLAVDIDEVAVKVAEENARLNGVEIEIKKNDLVEGIEEKFDVVVAN 239


>gi|315231617|ref|YP_004072053.1| hypothetical protein TERMP_01855 [Thermococcus barophilus MP]
 gi|315184645|gb|ADT84830.1| hypothetical protein TERMP_01855 [Thermococcus barophilus MP]
          Length = 1057

 Score = 41.1 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 3/31 (9%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ 52
           K+I+G++ S+   LP +  D+I  DPPY++ 
Sbjct: 589 KVIQGDATSL--NLP-EKFDVIVTDPPYSID 616


>gi|86150875|ref|ZP_01069091.1| putative cyclopropane-fatty-acyl-phospholipid synthase protein
           [Campylobacter jejuni subsp. jejuni 260.94]
 gi|85842045|gb|EAQ59291.1| putative cyclopropane-fatty-acyl-phospholipid synthase protein
           [Campylobacter jejuni subsp. jejuni 260.94]
          Length = 387

 Score = 41.1 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 69/188 (36%), Gaps = 16/188 (8%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG-TSGAVAK 242
           WL    + S     +    L+  Q    +   +     K G+ +LD   G G  S   A+
Sbjct: 123 WLDDTMNYSCAYFKEPNNTLYEAQIN-KIEHTLKKLDLKEGEKLLDIGCGWGWLSIMAAQ 181

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP- 301
           K     +GI + ++    A +R+  +     IE+ +   +  E    F+ +V  G+ +  
Sbjct: 182 KYGVKVVGITISEEQCKKAKERVKELGLEDKIEIRLQNYQDLEFENYFDKVVSVGMFEHV 241

Query: 302 -GQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
             + L      +   +   G+++       +H + A   G    N W   Y    G L S
Sbjct: 242 GKENLGLYFMKVKQVLKPGGSML-------LHSILAMFEGKT--NAWIDKYIFPGGYLPS 292

Query: 361 INTLRILV 368
              LR +V
Sbjct: 293 ---LREVV 297


>gi|313673190|ref|YP_004051301.1| methyltransferase [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939946|gb|ADR19138.1| methyltransferase [Calditerrivibrio nitroreducens DSM 19672]
          Length = 168

 Score = 41.1 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY 49
            +++  + +N   I  +   +IKG+ +  +  L  KS D+IF DPPY
Sbjct: 64  DRDTSNLLKNLQLIDGYNYTVIKGDFLKKMVTLTEKSFDIIFIDPPY 110


>gi|57505936|ref|ZP_00371860.1| hypothetical protein CUPA0072 [Campylobacter upsaliensis RM3195]
 gi|57015736|gb|EAL52526.1| hypothetical protein CUPA0072 [Campylobacter upsaliensis RM3195]
          Length = 788

 Score = 41.1 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 20/159 (12%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYN-----------LQLNGQLYRPDHSLVDAVTD-SWDK 74
           N +++ E L  KS+D I  DPPY              +  + Y    + +D   + + +K
Sbjct: 323 NVLNLEEYLNEKSIDFIMTDPPYGGLVRYLDLSYIWNIWLKSYDKRFANIDFNGEITINK 382

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN-----IFRIGTMLQNLNFWILNDI 129
             + + Y+      L    +VLK +G + +  ++HN            L+N NF I   I
Sbjct: 383 KVNLKNYETRFTTALKQIHKVLKDDGVMVI--TFHNKEIKIWNIFIKALKNANFVIEKVI 440

Query: 130 VWRKSNPM-PNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
             + +             +  +  I       +     N
Sbjct: 441 HQKNARSGESVVANPYGTSGTDFYIRCKKDFNSNKKIHN 479



 Score = 37.7 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +KP  +  + +    K   ++LDPF GS  S   A  + +  I  ++  
Sbjct: 24  KKPHNIWQKYIKCYAK-DGVMLDPFCGSAMSAVEALHIGQKAICFDLNP 71


>gi|300856011|ref|YP_003780995.1| cyclopropane-fatty-acyl-phospholipid synthase [Clostridium
           ljungdahlii DSM 13528]
 gi|300436126|gb|ADK15893.1| cyclopropane-fatty-acyl-phospholipid synthase [Clostridium
           ljungdahlii DSM 13528]
          Length = 394

 Score = 41.1 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 73/184 (39%), Gaps = 12/184 (6%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST-KPGDIILDPFFGSGT-SGAVA 241
           WL    S S      + + L+  Q  +  +  IL     K G  +LD   G G      A
Sbjct: 128 WLDKTMSYSCAYFKHENDSLYQAQLNK--VDHILKKLNLKEGQTLLDIGCGWGELILMAA 185

Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR-TEPRVAFNLLVERGLIQ 300
           KK     +GI + ++ +  A +RI      G +E+ +   +   + +  F+ +V  G+I+
Sbjct: 186 KKYGVKAVGITLSKEQLKKANERIEENNLQGKVEVKLADYRELADKKQKFDRIVSVGMIE 245

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
                   + N+S  +     +++   +  +H + A+  G    N W   Y    G + S
Sbjct: 246 -----HVGRKNLSTYMEDVRDMLNPGGVSLLHCITAQTEGE--VNEWIKRYIFPGGYIPS 298

Query: 361 INTL 364
           I  L
Sbjct: 299 IREL 302


>gi|289580068|ref|YP_003478534.1| hypothetical protein Nmag_0382 [Natrialba magadii ATCC 43099]
 gi|289529621|gb|ADD03972.1| protein of unknown function DUF1156 [Natrialba magadii ATCC 43099]
          Length = 894

 Score = 41.1 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
           +LDPF G GTS   A +   S +G ++      +  K + + Q   +   +       E 
Sbjct: 126 VLDPFMGGGTSLMEASRFGASVVGNDLNPVAWFVTKKELEAGQTDPDTLESAFD--EVEE 183

Query: 287 RVA 289
           RVA
Sbjct: 184 RVA 186



 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/143 (11%), Positives = 46/143 (32%), Gaps = 26/143 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYN-------------------LQLNGQLYRPDH 62
           +++ G+   +  +   +  D +  DPPY                    L    + + P+ 
Sbjct: 521 ELLCGDVRDL--EFQDE-FDAVLTDPPYYNNVIYSELSNFFYVWLRLLLSEEYEQFEPES 577

Query: 63  S-LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL---WVIGSYHNIFRIGTML 118
           +   D++  +  +  + E ++   R         LK +G L   +   +  +   +   L
Sbjct: 578 TPRADSIVTNPAEGKTEEDFEKELRESFSVVHSALKSDGVLAFTYHHSNVESWGELLEAL 637

Query: 119 QNLNFWILNDIVWRKSNPMPNFR 141
            ++ F +              ++
Sbjct: 638 CDVGFEVTATYPVTADTNRATYK 660


>gi|83591102|ref|YP_431111.1| adenine-specific DNA methylase [Moorella thermoacetica ATCC 39073]
 gi|83574016|gb|ABC20568.1| Adenine-specific DNA methylase containing a Zn-ribbon-like protein
           [Moorella thermoacetica ATCC 39073]
          Length = 751

 Score = 41.1 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 20/51 (39%)

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            S    G  + DPF G GT    A +L    +G ++      I  + I  +
Sbjct: 79  RSHNFQGLKVADPFMGGGTPLIEANRLGCHILGYDINPMAYWIVREEIEHL 129


>gi|78486271|ref|YP_392196.1| hypothetical protein Tcr_1932 [Thiomicrospira crunogena XCL-2]
 gi|78364557|gb|ABB42522.1| Methyltransferase superfamily protein [Thiomicrospira crunogena
           XCL-2]
          Length = 205

 Score = 41.1 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 32/53 (60%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
           +++ N+  I +N  ++   +  +I+ +S+  L++ P K  D+IF DPP+N  L
Sbjct: 92  LNRDNAQQIQQNLIALKISESDVIQVDSLQWLQQAPPKVFDVIFLDPPFNQGL 144



 Score = 36.5 bits (83), Expect = 7.3,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 40/127 (31%), Gaps = 23/127 (18%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGI-EMKQDYIDIATKRIASVQ-------PLGNIELTV 278
            LD F GSG  G  A       +   E+ +D      + + +++        + +++   
Sbjct: 65  CLDVFAGSGALGLEALSRGAHSVCFLELNRDNAQQIQQNLIALKISESDVIQVDSLQWLQ 124

Query: 279 LTGKRTEPRVAFNLLVERGLIQPGQILTNAQ---GNISATV------------CADGTLI 323
               +    +  +    +GL+QP   L        N  A +              DG + 
Sbjct: 125 QAPPKVFDVIFLDPPFNQGLMQPAIDLIFQNHYVKNAQAWLYLEQEKALDWPRLPDGWVC 184

Query: 324 SGTELGS 330
              +  S
Sbjct: 185 HREKTTS 191


>gi|255505263|ref|ZP_05345115.3| putative rRNA methylase [Bryantella formatexigens DSM 14469]
 gi|255269025|gb|EET62230.1| putative rRNA methylase [Bryantella formatexigens DSM 14469]
          Length = 221

 Score = 41.1 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 58/141 (41%), Gaps = 29/141 (20%)

Query: 213 LSRILVSSTKPGDIILDPFFGSGT-SGAVAKKLRRSF--IGIEMKQDYIDIATKRIASVQ 269
             R++      G + +D   G+G  +  +  +  R+   +  +++   ++   +R+A   
Sbjct: 44  CQRMMREHIHEGSLCIDATMGNGNDTQFLCTQAGRNGSVLAFDIQPAALEHTKERLAHAL 103

Query: 270 PLGNIELTVLTGKR----TEPR----VAFNLLVERGLI---------QPGQILTNAQGNI 312
           P  N +L + + +R      P     +AFNL    G +         +PG  LT  + ++
Sbjct: 104 PYCNYQLILDSHERLDAYAAPESADCIAFNL----GYLPGGDHTLATKPGSTLTALEKSL 159

Query: 313 SATVCADGTL----ISGTELG 329
           S  +  DG L     SG + G
Sbjct: 160 S-LLKKDGLLCICIYSGGDTG 179


>gi|15668459|ref|NP_247257.1| hypothetical protein MJ_0284 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2495889|sp|Q57732|Y284_METJA RecName: Full=Uncharacterized protein MJ0284
 gi|1499066|gb|AAB98272.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 219

 Score = 41.1 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 57/153 (37%), Gaps = 26/153 (16%)

Query: 199 DGEKLHPTQKPE--------ALLSRILVSSTK--PGDIILDPFFGSGTSGAVAKKLR-RS 247
           D  K HP  K +         L + IL  +      ++++D   G+G     +K L  + 
Sbjct: 12  DSLKRHPNPKADLEQYTIDGKLAADILFFAVNDFYNNVVIDLGCGTGRLAIGSKILGAKR 71

Query: 248 FIGIEMKQDYIDIATKRIASVQ--------PLGNIELTVLTGKRTEPRVAFNLLVERGLI 299
            IGI++ ++ I+ A +    +          + +++   L     E R    ++++    
Sbjct: 72  AIGIDIDRESIEAAKENAKKLNVDVDFYCMDIRDVDDEFLNNVLGEDRDLKRVVIQNPP- 130

Query: 300 QPGQILTNAQGNISATVCADGTLISGTELGSIH 332
                   AQ   +  V  D  L  G  + +IH
Sbjct: 131 ------FGAQKKHADRVFLDKALEIGDIIYTIH 157


>gi|303273590|ref|XP_003056155.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462239|gb|EEH59531.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 549

 Score = 41.1 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 5/50 (10%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK-----RIASV 268
            + ILD F G GT G       R   G E+  + ++ A +     RI + 
Sbjct: 368 TETILDLFCGVGTFGLCLASKARHVYGCEIVPEAVEDAKRNAVANRIENA 417


>gi|126173205|ref|YP_001049354.1| peptidase S10 serine carboxypeptidase [Shewanella baltica OS155]
 gi|125996410|gb|ABN60485.1| peptidase S10, serine carboxypeptidase [Shewanella baltica OS155]
          Length = 513

 Score = 41.1 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 43/134 (32%), Gaps = 8/134 (5%)

Query: 34  KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
            +  +S DL+F DP     +     R       A  D WD     ++   F R WL+  +
Sbjct: 150 SMLDES-DLVFIDP-----VGTGFSRALGDKKGA--DFWDVKEDAQSIAEFIRRWLIEHK 201

Query: 94  RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           R   P               +   LQ     I  + +   S+ +     R     ++  I
Sbjct: 202 RWNSPKYLAGESYGTTRAAALVNELQGGWTDISVNGIMLISSILDFSHARYQPGNNQPYI 261

Query: 154 WASPSPKAKGYTFN 167
              P+  A  +  N
Sbjct: 262 GFLPTMAATAFYHN 275


>gi|325120835|emb|CBZ56390.1| Methyltransferase-like protein, related [Neospora caninum
           Liverpool]
          Length = 883

 Score = 41.1 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 205 PTQKPEAL-LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           PT     L       +  K G ++LDPF G+G+    A     + IG ++ 
Sbjct: 647 PTSLDVELAFLMCHQAHIKRGSLVLDPFVGTGSILISASYYGATCIGSDID 697


>gi|288560869|ref|YP_003424355.1| SAM-dependent methyltransferase [Methanobrevibacter ruminantium M1]
 gi|288543579|gb|ADC47463.1| SAM-dependent methyltransferase [Methanobrevibacter ruminantium M1]
          Length = 273

 Score = 41.1 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 8/103 (7%)

Query: 231 FFGSG----TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
           F GSG    T            IGIE   D  D++ K +  +     IE+ V   ++T  
Sbjct: 135 FLGSGPLPLTIIMFNMVTGCKCIGIEQDPDVADLSRKVLKRLDLDEGIEI-VTGNEKTIA 193

Query: 287 RVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELG 329
            + +++L+     +P   +     N+   V  D  ++  T  G
Sbjct: 194 ELDYDILMIAAFAEPKDRVF---ANVWDIVDEDTPVLYRTYTG 233


>gi|158335208|ref|YP_001516380.1| methyltransferase [Acaryochloris marina MBIC11017]
 gi|158305449|gb|ABW27066.1| methyltransferase, putative [Acaryochloris marina MBIC11017]
          Length = 181

 Score = 41.1 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 23/34 (67%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG 55
           ++++G+ +  L KL ++S D I+ DPPY+  L G
Sbjct: 92  QVLRGDVVKRLAKLQSQSFDRIYFDPPYDGGLYG 125


>gi|329725394|gb|EGG61877.1| ribosomal protein L11 methyltransferase [Staphylococcus epidermidis
           VCU144]
          Length = 312

 Score = 41.1 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 69/202 (34%), Gaps = 30/202 (14%)

Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL--------------HPTQKPEALLS 214
              +  N     R+     I    E    ++  +L              HPT    ++  
Sbjct: 108 WENEWKNYFHPFRASKQFTIVPSWESYVKENDNELCIELDPGMAFGTGDHPTT---SMCL 164

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATKRIASVQPLGN 273
           + + +  KP D ++D   GSG     +  L    I  +++ +  +++A +          
Sbjct: 165 KAIETFVKPTDSVIDVGTGSGILSIASHLLGVQRIKALDIDEMAVNVAKENFKKNLCDDA 224

Query: 274 IELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGS--- 330
           IE       + E    FN+++   L    + +     N   T+  DG  I+   +     
Sbjct: 225 IEAVPGNLLKNENE-KFNIVIANILAHIIEEMIEDTYN---TLIEDGYFITSGIIEEKYQ 280

Query: 331 -----IHRVGAKVSGSETCNGW 347
                + R+G K+   E  NGW
Sbjct: 281 DIESQMKRIGFKIISVEHDNGW 302


>gi|296268835|ref|YP_003651467.1| N-6 DNA methylase [Thermobispora bispora DSM 43833]
 gi|296091622|gb|ADG87574.1| N-6 DNA methylase [Thermobispora bispora DSM 43833]
          Length = 675

 Score = 41.1 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ 56
           +I+ G+++   +  P + VD +  DPP+N +  G 
Sbjct: 239 RIVAGDALRG-DGFPGEQVDAVVCDPPFNERAWGH 272


>gi|115289066|gb|ABI85547.1| M.Hin1056ModP-9 [Haemophilus influenzae]
          Length = 297

 Score = 41.1 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 17/89 (19%)

Query: 21  DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + IIKGN++  L  L       V LI+ D P+N   +   Y              DKF S
Sbjct: 223 NLIIKGNNLVALHTLKMQFKGKVKLIYIDVPFNTGNDSFGY-------------NDKF-S 268

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
              +  F +  L   + +L  +G ++V  
Sbjct: 269 RSTWLTFMKNRLEVAKDLLADDGVIFVHC 297


>gi|20806632|ref|NP_621803.1| SAM-dependent methyltransferase [Thermoanaerobacter tengcongensis
           MB4]
 gi|20515079|gb|AAM23407.1| SAM-dependent methyltransferases [Thermoanaerobacter tengcongensis
           MB4]
          Length = 251

 Score = 41.1 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 18/118 (15%)

Query: 6   SLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFAD-PPYNLQLNGQLYRPDHSL 64
           S+AIN  +N I     KII G+   V + L  +  D +    PPY     G   +     
Sbjct: 88  SVAINSLENRI-----KIIHGDVREVEKLLGYEKFD-VVTSNPPYMPLYTGFEKK----- 136

Query: 65  VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                +  +  + +E Y      ++ A  ++LK  G  +++     +  +   L+  N
Sbjct: 137 -----EEAENIARYEVYGG-LEDFVKAAFKLLKFGGKFFMVHRPDRLVDVMYFLRKYN 188


>gi|66809181|ref|XP_638313.1| hypothetical protein DDB_G0285285 [Dictyostelium discoideum AX4]
 gi|60466757|gb|EAL64806.1| hypothetical protein DDB_G0285285 [Dictyostelium discoideum AX4]
          Length = 440

 Score = 41.1 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 46/291 (15%), Positives = 89/291 (30%), Gaps = 55/291 (18%)

Query: 5   NSLAINENQNSIFE----WKDKIIKGNSISVLEK--LPAKSVDLIFADPPYNLQLNGQLY 58
            SL +N  +N I +    ++D I   +++  L++  +  +S   +    P          
Sbjct: 136 ESLELN-KKNGILDRVGVYRD-IYCMDAVQWLKENEISPQS--SVITSLP---------- 181

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL-KPNGTLWVIGSYHNIFRIGTM 117
             D S V ++          E Y  +    +      L + N  +         +++   
Sbjct: 182 --DISEVSSMN--------LEQYKQWFTDTVSLITSKLDEKNVAIVYQTDIKKKWKMDRG 231

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
           +                         +   AH  +            TF +    + N  
Sbjct: 232 IIEEYVDKGYLAQKGAEISGCKVIWHKIMTAHSNI-------SNNKATFTHMICFSKNPT 284

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
                +   P   G   +       L+       L  R + S+T     I+DPF G G+ 
Sbjct: 285 NIKYQE-NTPDIGGRGSMVWSKAMGLNACVIAI-LYCRSIGSTT-----IIDPFCGKGSV 337

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
            AVA       +G+++               +   N++L V T  + +PRV
Sbjct: 338 LAVANVYGLDSVGVDLSS----------GKTKNSFNLQLDVETVNKFDPRV 378


>gi|331640361|ref|ZP_08341509.1| putative methylation subunit, type III restriction-modification
           system [Escherichia coli H736]
 gi|331040107|gb|EGI12314.1| putative methylation subunit, type III restriction-modification
           system [Escherichia coli H736]
          Length = 556

 Score = 41.1 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 44/143 (30%), Gaps = 18/143 (12%)

Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
             R R  + A E  +WA          +     + A +    +S W+ P    S      
Sbjct: 202 YGRDRVIREAKEGTVWAKRIKGEIQIHY-----RQAGKPKMRKSVWIGPKLDASTYGSEL 256

Query: 199 DGEKLHPTQKPEALLS------RILVSSTK-PGDIILDPFFGSGTSGAVAKKLR------ 245
                + TQ   +           L S +       LD F GSGT+G     +       
Sbjct: 257 LNSLFNVTQINFSFPKSIYAVKECLESLSNSKYAHFLDYFAGSGTTGHAVVDMNRDDNGF 316

Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
           R F  +E  + +  +   R+   
Sbjct: 317 RKFSLVEQGEYFYSVTLPRVKKA 339



 Score = 37.3 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 40/123 (32%), Gaps = 19/123 (15%)

Query: 37  AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
              VD I+ DPPYN   +  LY+  +                 ++ +   + L   + +L
Sbjct: 10  NNKVDGIYIDPPYNTNASEILYKNGYK--------------DSSWCSLMSSRLEISKSLL 55

Query: 97  KPNGTLWVIGSYHNIFRIGTMLQN--LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
           K N         + +  +  +L+     + I   ++              F   HE  +W
Sbjct: 56  KENAATCTTIDEYEVANLELLLKETFTGYQIRPVVIEYNHRGRVKSN---FAITHEYALW 112

Query: 155 ASP 157
             P
Sbjct: 113 TLP 115


>gi|320100787|ref|YP_004176379.1| RNA methylase [Desulfurococcus mucosus DSM 2162]
 gi|319753139|gb|ADV64897.1| RNA methylase [Desulfurococcus mucosus DSM 2162]
          Length = 336

 Score = 41.1 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           ++  + G I+LDPF G+GT    A  +    +GIE+ 
Sbjct: 179 LARVREGGILLDPFAGTGTILMEAWSMNIRAVGIEVD 215


>gi|157415447|ref|YP_001482703.1| cyclopropane-fatty-acyl-phospholipid synthase, putative
           [Campylobacter jejuni subsp. jejuni 81116]
 gi|157386411|gb|ABV52726.1| cyclopropane-fatty-acyl-phospholipid synthase, putative
           [Campylobacter jejuni subsp. jejuni 81116]
 gi|307748089|gb|ADN91359.1| Cyclopropane-fatty-acyl-phospholipid synthase [Campylobacter jejuni
           subsp. jejuni M1]
 gi|315932326|gb|EFV11269.1| cyclopropane-fatty-acyl-phospholipid synthase, putative
           [Campylobacter jejuni subsp. jejuni 327]
          Length = 387

 Score = 41.1 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 69/188 (36%), Gaps = 16/188 (8%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG-TSGAVAK 242
           WL    S S     +    L+  Q    +   +     K G+ +LD   G G  S   A+
Sbjct: 123 WLDDTMSYSCAYFKEPNNTLYEAQIN-KIEHTLKKLDLKEGEKLLDIGCGWGWLSIMAAQ 181

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP- 301
           K     +GI + ++    A +R+  +     IE+ +   +  E    F+ +V  G+ +  
Sbjct: 182 KYGVKVVGITISEEQCKKAKERVKELGLEDKIEIRLQNYQDLEFENYFDKVVSVGMFEHV 241

Query: 302 -GQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
             + L      +   +   G+++       +H + A   G    N W   Y    G L S
Sbjct: 242 GKENLGLYFMKVKQVLKPGGSML-------LHSILAMFEGKT--NAWIDKYIFPGGYLPS 292

Query: 361 INTLRILV 368
              LR +V
Sbjct: 293 ---LREVV 297


>gi|134302002|ref|YP_001121971.1| 50S ribosomal protein L11, methyltransferase [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|254372944|ref|ZP_04988433.1| ribosomal protein L11 methyltransferase [Francisella tularensis
           subsp. novicida GA99-3549]
 gi|134049779|gb|ABO46850.1| ribosomal protein L11 methyltransferase [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|151570671|gb|EDN36325.1| ribosomal protein L11 methyltransferase [Francisella novicida
           GA99-3549]
          Length = 281

 Score = 41.1 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 74/224 (33%), Gaps = 29/224 (12%)

Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
           Y N   I T++ N+     N I                  ++E +           + ++
Sbjct: 47  YENHHDIDTIIANIKQKFENIIESEI--------------SYEII---KDQQWEAAWLYD 89

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSSTKPGD 225
           Y+ ++  N ++ +  +W  P           D          E   +    L        
Sbjct: 90  YEPIEIGN-NIVVYPNWRQPPQDNKHTYIIVDPSIAFGCGNHETTKMCLEWLEQHVSKDT 148

Query: 226 IILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            +LD   G+G     A KL   +  GI++  + I+ +   I + Q     + T  +    
Sbjct: 149 TVLDYGCGTGVLAIGAVKLGAKYAEGIDIDPNSIESS---IKNAQENDVTDKTHFSDN-- 203

Query: 285 EPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTEL 328
            P   F+L+V         +L +  GNI+ ++   G L     +
Sbjct: 204 PPTQQFDLVVANIF---SNVLISLVGNITTSLKKGGRLALSGII 244


>gi|186477379|ref|YP_001858849.1| ribosomal protein L11 methyltransferase [Burkholderia phymatum
           STM815]
 gi|226710060|sp|B2JH19|PRMA_BURP8 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|184193838|gb|ACC71803.1| ribosomal protein L11 methyltransferase [Burkholderia phymatum
           STM815]
          Length = 300

 Score = 41.1 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 12/130 (9%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYI 258
           G   HPT +   L    L  S +    +LD   GSG    +AKK   + + GI++    +
Sbjct: 145 GTGSHPTTR---LCMEWLEQSVQKDQSVLDYGCGSGILAILAKKCGANPVFGIDIDPQAV 201

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + A  R  S +    I   +       P   F+++V   L  P +++ +    +S+ V  
Sbjct: 202 ESA--RHNSERNRAEITYGLPAD---CPAGEFDIVVANILSNPLKLMASM---LSSKVKP 253

Query: 319 DGTLISGTEL 328
            G +     L
Sbjct: 254 GGRIALSGIL 263


>gi|57238055|ref|YP_179304.1| cyclopropane-fatty-acyl-phospholipid synthase, putative
           [Campylobacter jejuni RM1221]
 gi|88596339|ref|ZP_01099576.1| cyclopropane-fatty-acyl-phospholipid synthase, putative
           [Campylobacter jejuni subsp. jejuni 84-25]
 gi|57166859|gb|AAW35638.1| cyclopropane-fatty-acyl-phospholipid synthase, putative
           [Campylobacter jejuni RM1221]
 gi|88191180|gb|EAQ95152.1| cyclopropane-fatty-acyl-phospholipid synthase, putative
           [Campylobacter jejuni subsp. jejuni 84-25]
 gi|315058615|gb|ADT72944.1| Putative cyclopropane-fatty-acyl-phospholipid synthase
           [Campylobacter jejuni subsp. jejuni S3]
          Length = 387

 Score = 41.1 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 69/188 (36%), Gaps = 16/188 (8%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG-TSGAVAK 242
           WL    S S     +    L+  Q    +   +     K G+ +LD   G G  S   A+
Sbjct: 123 WLDDTMSYSCAYFKEPNNTLYEAQIN-KIEHTLKKLDLKEGEKLLDIGCGWGWLSIMAAQ 181

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP- 301
           K     +GI + ++    A +R+  +     IE+ +   +  E    F+ +V  G+ +  
Sbjct: 182 KYGVKVVGITISEEQCKKAKERVKELGLEDKIEIRLQNYQDLEFENYFDKVVSVGMFEHV 241

Query: 302 -GQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
             + L      +   +   G+++       +H + A   G    N W   Y    G L S
Sbjct: 242 GKENLGLYFMKVKQVLKPGGSML-------LHSILAMFEGKT--NAWIDKYIFPGGYLPS 292

Query: 361 INTLRILV 368
              LR +V
Sbjct: 293 ---LREVV 297


>gi|313844064|ref|YP_004061727.1| hypothetical protein OlV1_094 [Ostreococcus lucimarinus virus OlV1]
 gi|312599449|gb|ADQ91471.1| hypothetical protein OlV1_094 [Ostreococcus lucimarinus virus OlV1]
          Length = 341

 Score = 41.1 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
           ++ + ++   L  LP   VDLI+ DPPYN    G  Y
Sbjct: 196 EVYRQDACDFLRDLP--KVDLIYLDPPYNQHPYGSNY 230


>gi|269121048|ref|YP_003309225.1| methyltransferase [Sebaldella termitidis ATCC 33386]
 gi|268614926|gb|ACZ09294.1| methyltransferase [Sebaldella termitidis ATCC 33386]
          Length = 183

 Score = 41.1 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 1/78 (1%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFI 249
            +++L+ K+G +  PT +        ++S        LD + G+G+    A     R  I
Sbjct: 9   KNKKLKTKEGRETRPTLERVKEAIFSIISDEITDSSFLDLYAGTGSIAIEALSRGARRAI 68

Query: 250 GIEMKQDYIDIATKRIAS 267
            IE  ++ + I  + I +
Sbjct: 69  LIEQDKEALRIIIENINN 86


>gi|163939112|ref|YP_001643996.1| methyltransferase type 12 [Bacillus weihenstephanensis KBAB4]
 gi|163861309|gb|ABY42368.1| Methyltransferase type 12 [Bacillus weihenstephanensis KBAB4]
          Length = 229

 Score = 41.1 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 57/160 (35%), Gaps = 24/160 (15%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L  +  E  +    P  L   I     +    +LD    SG  GA  K+      GIE  
Sbjct: 8   LYEEKSEHYYNAINP-NLFKHIKKEWQE----VLDIGCSSGALGAAIKENGARVSGIEAF 62

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNA---QG 310
            +  + A +++  V  LG+IE   L  ++ +   V F  ++E         L +      
Sbjct: 63  PEAAEKAKEKLDHVI-LGDIETMDLPYEKEQFDCVIFGDVLEH--------LFDPWAVIK 113

Query: 311 NISATVCADGTLISGTELGSIHRVGAKVSGSETCNG-WNF 349
            +   +  +G +++     SI  V      +    G W +
Sbjct: 114 KVKPYIKENGVILA-----SIPNVAHISVLAPLLAGNWTY 148


>gi|239637610|ref|ZP_04678582.1| ribosomal protein L11 methyltransferase [Staphylococcus warneri
           L37603]
 gi|239596828|gb|EEQ79353.1| ribosomal protein L11 methyltransferase [Staphylococcus warneri
           L37603]
          Length = 312

 Score = 41.1 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 70/202 (34%), Gaps = 30/202 (14%)

Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL--------------HPTQKPEALLS 214
              +  N     R+     I    E    +   +L              HPT    ++  
Sbjct: 108 WENEWKNYFHPFRASETFTIVPSWETYTKESANELCIELDPGMAFGTGDHPTT---SMCL 164

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATKRIASVQPLGN 273
           + + +  KP   ++D   GSG     +  +    I  +++ +  +++A +       L  
Sbjct: 165 KAIENFMKPQHSVIDVGTGSGILSIASHLIGVKRIKALDIDEMAVNVAKENFEKNHCLNA 224

Query: 274 IELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGS--- 330
           IE       + E +  F++++   ++    I+     +   TV  DG  I+   +     
Sbjct: 225 IEAVPGNLLKDE-KEHFDIVI-ANIL--AHIIDEMIEDAYNTVNEDGYFITSGIIEEKYE 280

Query: 331 -----IHRVGAKVSGSETCNGW 347
                + RVG K+   +  NGW
Sbjct: 281 DIESHMKRVGFKIISVQHDNGW 302


>gi|224369619|ref|YP_002603783.1| hypothetical protein HRM2_25250 [Desulfobacterium autotrophicum
           HRM2]
 gi|223692336|gb|ACN15619.1| hypothetical protein HRM2_25250 [Desulfobacterium autotrophicum
           HRM2]
          Length = 479

 Score = 41.1 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 23/49 (46%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           P + P  L++  L   TKPGD++LDP  G G    V     R     ++
Sbjct: 268 PGRIPAQLVAHTLFYYTKPGDLVLDPMAGGGVVPDVCLIFERKCQAFDL 316



 Score = 38.4 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 5/106 (4%)

Query: 41  DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG 100
           DLIF DPPY  +              +++    K      Y+ F RA+ L  R   K   
Sbjct: 344 DLIFFDPPYFTKKKKAYKEKATRQTPSISSYKKK-----DYEQFFRAFFLLARENTKQTR 398

Query: 101 TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
             ++   +++       L++ +  I      R  +       RR +
Sbjct: 399 MAFLNADWYDFESTPAPLEDPDKSITIFDFHRLLSKTGWRTIRRIE 444


>gi|163783066|ref|ZP_02178061.1| hypothetical protein HG1285_00785 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881746|gb|EDP75255.1| hypothetical protein HG1285_00785 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 150

 Score = 41.1 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 18/36 (50%), Positives = 26/36 (72%), Gaps = 5/36 (13%)

Query: 20  KDKIIKGNSISVLEKLPAKSVD--LIFADPPYNLQL 53
           K ++I+G+S+ VLE+L    V   +IFADPPYN +L
Sbjct: 72  KGRVIRGDSLKVLEQLK---VQPEVIFADPPYNFEL 104



 Score = 36.5 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 14/115 (12%)

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
           LD F G+G  G  A++     I +E          K+ A  + +    L VL   + +P 
Sbjct: 34  LDLFAGTGQVGLEAERRGAQVIYVEKNPRRAADIKKK-AKGRVIRGDSLKVLEQLKVQPE 92

Query: 288 VAFNL----------LVERGL--IQPGQILTNAQGNISATVCADGTLISGTELGS 330
           V F            L+E+ L  + PG  L   + +      AD T + G    S
Sbjct: 93  VIFADPPYNFELYKPLIEKALAVLAPG-GLFILEHDKRKKFSADETRLYGDTALS 146


>gi|94967906|ref|YP_589954.1| hypothetical protein Acid345_0877 [Candidatus Koribacter versatilis
           Ellin345]
 gi|94549956|gb|ABF39880.1| conserved hypothetical protein [Candidatus Koribacter versatilis
           Ellin345]
          Length = 271

 Score = 41.1 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 34/73 (46%)

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
           A++ R +  + +PGD +LD   G+G       K   + +G +  +  +++A  ++  +  
Sbjct: 36  AVVWREIDRTFQPGDTVLDLNCGTGEDALYLVKRGINVVGCDASRRMVEVAQNKLRGITN 95

Query: 271 LGNIELTVLTGKR 283
               E  VL  ++
Sbjct: 96  PARGEFHVLANEQ 108


>gi|312793762|ref|YP_004026685.1| 50S ribosomal protein L11 methyltransferase [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180902|gb|ADQ41072.1| ribosomal protein L11 methyltransferase [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 304

 Score = 40.7 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 55/150 (36%), Gaps = 13/150 (8%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
           W      G++ +   D      T   E  AL    +    KPG  +LD   GSG     A
Sbjct: 127 WQDYKAEGNKTIVRLDPGMAFGTGTHESTALCLEAIQEYVKPGMDVLDVGTGSGILAIAA 186

Query: 242 KK-LRRSFIGIEMKQDYIDIATK--RIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGL 298
           KK L +  + +++ +  + +A +  R+  V+        V   +     V  N++     
Sbjct: 187 KKFLAKRVLAVDIDEVAVKVAEENARLNGVEIEIKKNDLVEGIEEKFDVVIANIV----- 241

Query: 299 IQPGQILTNAQGNISATVCADGTLISGTEL 328
                I+     +I+  +  DG  IS   +
Sbjct: 242 ---ADIIIKLSKDINRVLKEDGIFISSGII 268


>gi|229550588|ref|ZP_04439313.1| possible site-specific DNA-methyltransferase
           (cytosine-N(4)-specific) [Enterococcus faecalis ATCC
           29200]
 gi|229304307|gb|EEN70303.1| possible site-specific DNA-methyltransferase
           (cytosine-N(4)-specific) [Enterococcus faecalis ATCC
           29200]
          Length = 441

 Score = 40.7 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
            L+ +I+        I+LDPF GSG+S    +       GI++  
Sbjct: 51  KLVEKIIKKYDIK-GILLDPFMGSGSSILAGRLNHLKTYGIDVNP 94


>gi|229010606|ref|ZP_04167807.1| O-antigen biosynthesis protein [Bacillus mycoides DSM 2048]
 gi|229132114|ref|ZP_04260973.1| O-antigen biosynthesis protein [Bacillus cereus BDRD-ST196]
 gi|229166156|ref|ZP_04293916.1| O-antigen biosynthesis protein [Bacillus cereus AH621]
 gi|228617254|gb|EEK74319.1| O-antigen biosynthesis protein [Bacillus cereus AH621]
 gi|228651334|gb|EEL07310.1| O-antigen biosynthesis protein [Bacillus cereus BDRD-ST196]
 gi|228750650|gb|EEM00475.1| O-antigen biosynthesis protein [Bacillus mycoides DSM 2048]
          Length = 232

 Score = 40.7 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 57/160 (35%), Gaps = 24/160 (15%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L  +  E  +    P  L   I     +    +LD    SG  GA  K+      GIE  
Sbjct: 11  LYEEKSEHYYNAINP-NLFKHIKKEWQE----VLDIGCSSGALGAAIKENGARVSGIEAF 65

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNA---QG 310
            +  + A +++  V  LG+IE   L  ++ +   V F  ++E         L +      
Sbjct: 66  PEAAEKAKEKLDHVI-LGDIETMDLPYEKEQFDCVIFGDVLEH--------LFDPWAVIK 116

Query: 311 NISATVCADGTLISGTELGSIHRVGAKVSGSETCNG-WNF 349
            +   +  +G +++     SI  V      +    G W +
Sbjct: 117 KVKPYIKENGVILA-----SIPNVAHISVLAPLLAGNWTY 151


>gi|114331873|ref|YP_748095.1| ribosomal protein L11 methyltransferase [Nitrosomonas eutropha C91]
 gi|122313396|sp|Q0AEV2|PRMA_NITEC RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|114308887|gb|ABI60130.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [Nitrosomonas eutropha C91]
          Length = 313

 Score = 40.7 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYI 258
           G   HPT     L    L    KPGD +LD   GSG     A KL     +G+++  + I
Sbjct: 144 GTGSHPTT---QLCLGWLDKFLKPGDSVLDYGCGSGILAIAALKLGADRVMGVDIDPNAI 200

Query: 259 DIATK 263
             + +
Sbjct: 201 TASLE 205


>gi|306833755|ref|ZP_07466881.1| conserved hypothetical protein [Streptococcus bovis ATCC 700338]
 gi|304424092|gb|EFM27232.1| conserved hypothetical protein [Streptococcus bovis ATCC 700338]
          Length = 249

 Score = 40.7 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 8/26 (30%), Positives = 16/26 (61%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADP 47
           K    ++I+ ++ L  KS D+++ DP
Sbjct: 151 KTYCADNITYMKSLSDKSFDVVYCDP 176


>gi|160893946|ref|ZP_02074725.1| hypothetical protein CLOL250_01501 [Clostridium sp. L2-50]
 gi|156864324|gb|EDO57755.1| hypothetical protein CLOL250_01501 [Clostridium sp. L2-50]
          Length = 402

 Score = 40.7 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 210 EALLSRILVSST-KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT--KRIA 266
           E L ++ +  +  K  + ++D + G GT G VA    +  IG+E+  + I  A    R+ 
Sbjct: 236 EKLYNKAIKYADLKKKETVIDAYCGIGTIGIVASDRAKRVIGVELNAEAIRDAKINSRMN 295

Query: 267 SVQPLGNIELTVLTGKR 283
            ++   NIE       R
Sbjct: 296 KIE---NIEFYANDAGR 309


>gi|308229529|gb|ADO24179.1| M.ApoI [Arthrobacter protophormiae]
          Length = 335

 Score = 40.7 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
            SIF+ + ++ + ++  +  +L A   DL++ DPPYN    G  Y
Sbjct: 182 QSIFQSEHEVFRRDANDLASELDA--FDLVYIDPPYNQHPYGSNY 224


>gi|187927351|ref|YP_001897838.1| methyltransferase [Ralstonia pickettii 12J]
 gi|309779948|ref|ZP_07674702.1| RNA methyltransferase, RsmD family [Ralstonia sp. 5_7_47FAA]
 gi|187724241|gb|ACD25406.1| methyltransferase [Ralstonia pickettii 12J]
 gi|308921307|gb|EFP66950.1| RNA methyltransferase, RsmD family [Ralstonia sp. 5_7_47FAA]
          Length = 218

 Score = 40.7 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 31/81 (38%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           I+ G++ + L + P  ++D +F DPP+                                 
Sbjct: 119 IVSGDAFAWLARQPDAALDAVFIDPPFA-------------------------------Q 147

Query: 83  AFTRAWLLACRRVLKPNGTLW 103
            +T   L A  RV+KP G ++
Sbjct: 148 DWTLRALEAAARVVKPGGVIY 168


>gi|89900458|ref|YP_522929.1| hypothetical protein Rfer_1668 [Rhodoferax ferrireducens T118]
 gi|89345195|gb|ABD69398.1| conserved hypothetical protein 95 [Rhodoferax ferrireducens T118]
          Length = 220

 Score = 40.7 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 20/28 (71%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY 49
           +I++G+ ++ L+ L   S+D +F DPP+
Sbjct: 130 QIVRGDGLAALKHLDPASMDAVFLDPPF 157


>gi|328953125|ref|YP_004370459.1| Ribosomal protein L11 methyltransferase [Desulfobacca acetoxidans
           DSM 11109]
 gi|328453449|gb|AEB09278.1| Ribosomal protein L11 methyltransferase [Desulfobacca acetoxidans
           DSM 11109]
          Length = 298

 Score = 40.7 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 10/101 (9%)

Query: 200 GEKLHPTQKPEALLSRILVSST-----KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           G   HP+     L  + L   T      P   +LD   G+G  G  A +L    + I++ 
Sbjct: 138 GTGRHPSTW---LCLKALEEVTYNWSQHPPRWVLDVGTGTGILGLAAARLGARVLAIDVD 194

Query: 255 QDYIDIATKRI--ASVQPLGNIELTVLTGKRTEPRVAFNLL 293
            + +  A + I    +  L  +E   L+  R +  + F  L
Sbjct: 195 PEALAAARENILLNELHDLMRVEDLPLSAIRQQFDLIFANL 235


>gi|320101474|ref|YP_004177066.1| type 11 methyltransferase [Desulfurococcus mucosus DSM 2162]
 gi|319753826|gb|ADV65584.1| Methyltransferase type 11 [Desulfurococcus mucosus DSM 2162]
          Length = 160

 Score = 40.7 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK--LRRSFIGIEMKQDYIDIAT 262
           PT  P      + ++    GD++ D   G G    VA K    R  +G+E   + I  A 
Sbjct: 9   PTPYPVVR-EMLRLAGAGEGDVVYDLGCGDGRILIVAVKEFNVRKAVGVERDSERIKEAR 67

Query: 263 KRIAS 267
           +RI+ 
Sbjct: 68  RRISE 72


>gi|302802849|ref|XP_002983178.1| hypothetical protein SELMODRAFT_117965 [Selaginella moellendorffii]
 gi|300148863|gb|EFJ15520.1| hypothetical protein SELMODRAFT_117965 [Selaginella moellendorffii]
          Length = 188

 Score = 40.7 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQ 255
           G   HPT K   L  + L  S + GD ILD   GSG     A K+     +G+++  
Sbjct: 39  GTGEHPTTK---LCLKWLHKSVRSGDNILDYGTGSGILAIAALKMGASHAVGVDIDP 92


>gi|148926188|ref|ZP_01809873.1| putative cyclopropane-fatty-acyl-phospholipid synthase
           [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145845359|gb|EDK22452.1| putative cyclopropane-fatty-acyl-phospholipid synthase
           [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 391

 Score = 40.7 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 69/188 (36%), Gaps = 16/188 (8%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG-TSGAVAK 242
           WL    S S     +    L+  Q    +   +     K G+ +LD   G G  S   A+
Sbjct: 127 WLDDTMSYSCAYFKEPNNTLYEAQIN-KIEHTLKKLDLKEGEKLLDIGCGWGWLSIMAAQ 185

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP- 301
           K     +GI + ++    A +R+  +     IE+ +   +  E    F+ +V  G+ +  
Sbjct: 186 KYGVKVVGITISEEQCKKAKERVKELGLEDKIEIRLQNYQDLEFENYFDKVVSVGMFEHV 245

Query: 302 -GQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
             + L      +   +   G+++       +H + A   G    N W   Y    G L S
Sbjct: 246 GKENLGLYFMKVKQVLKPGGSML-------LHSILAMFEGKT--NAWIDKYIFPGGYLPS 296

Query: 361 INTLRILV 368
              LR +V
Sbjct: 297 ---LREVV 301


>gi|331270010|ref|YP_004396502.1| 50S ribosomal protein L11 methyltransferase [Clostridium botulinum
           BKT015925]
 gi|329126560|gb|AEB76505.1| ribosomal protein L11 methyltransferase [Clostridium botulinum
           BKT015925]
          Length = 312

 Score = 40.7 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 4/109 (3%)

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSR 215
              A  +   Y   K  NE + ++  W   I    E +   D      T   E   L  +
Sbjct: 111 QDWANNWKKYYKPTKIGNE-IVVKPTWEEYIKKDDEIVIELDPGMAFGTGTHETTRLCVK 169

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
            L    K   ++ D   GSG     A KL  +  +G+++    +D A +
Sbjct: 170 ALEEYVKEDSVVFDIGTGSGILSIAAAKLNAKHVVGVDLDPVAVDAAKE 218


>gi|313201666|ref|YP_004040324.1| methyltransferase [Methylovorus sp. MP688]
 gi|312440982|gb|ADQ85088.1| methyltransferase [Methylovorus sp. MP688]
          Length = 197

 Score = 40.7 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 4/32 (12%)

Query: 23  IIKGNSISVLE----KLPAKSVDLIFADPPYN 50
           ++  ++  +L     KL A S D+IF DPPYN
Sbjct: 108 LLNADAAQLLSAPSAKLEAGSFDVIFLDPPYN 139


>gi|312876839|ref|ZP_07736816.1| ribosomal protein L11 methyltransferase [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796354|gb|EFR12706.1| ribosomal protein L11 methyltransferase [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 304

 Score = 40.7 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 55/150 (36%), Gaps = 13/150 (8%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
           W      G++ +   D      T   E  AL    +    KPG  +LD   GSG     A
Sbjct: 127 WQDYKAEGNKTIVRLDPGMAFGTGTHESTALCLEAIQEYVKPGMDVLDVGTGSGILAIAA 186

Query: 242 KK-LRRSFIGIEMKQDYIDIATK--RIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGL 298
           KK L +  + +++ +  + +A +  R+  V+        V   +     V  N++     
Sbjct: 187 KKFLAKRVLAVDIDEVAVKVAEENARLNGVEIEIKKNDLVEGIEEKFDVVIANIV----- 241

Query: 299 IQPGQILTNAQGNISATVCADGTLISGTEL 328
                I+     +I+  +  DG  IS   +
Sbjct: 242 ---ADIIIKLSKDINRVLKEDGIFISSGII 268


>gi|311280150|ref|YP_003942381.1| rRNA (guanine-N(2)-)-methyltransferase [Enterobacter cloacae SCF1]
 gi|308749345|gb|ADO49097.1| rRNA (guanine-N(2)-)-methyltransferase [Enterobacter cloacae SCF1]
          Length = 701

 Score = 40.7 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 39/127 (30%), Gaps = 21/127 (16%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++++ + +  L +   +  DLIF DPP         +     + D      D       
Sbjct: 590 HRLLQADVLGWLRE-SDEQFDLIFIDPP--------TFSNSKRMADTFDVQRDHL----- 635

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
                   +   +R+L+  GT+    +          L  L      +I  +  +P    
Sbjct: 636 ------NLMTDLKRLLRKGGTIMFSNNKRGFRIDHDGLAKLGLK-AQEITQKTLSPDFAR 688

Query: 141 RGRRFQN 147
            G+    
Sbjct: 689 NGQIHNC 695


>gi|121612108|ref|YP_001000858.1| cyclopropane-fatty-acyl-phospholipid synthase, putative
           [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167005770|ref|ZP_02271528.1| cyclopropane-fatty-acyl-phospholipid synthase, putative
           [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87249076|gb|EAQ72037.1| cyclopropane-fatty-acyl-phospholipid synthase, putative
           [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 387

 Score = 40.7 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 69/188 (36%), Gaps = 16/188 (8%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG-TSGAVAK 242
           WL    S S     +    L+  Q    +   +     K G+ +LD   G G  S   A+
Sbjct: 123 WLDDTMSYSCAYFKEPNNTLYEAQIN-KIEHTLKKLDLKEGEKLLDIGCGWGWLSIMAAQ 181

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP- 301
           K     +GI + ++    A +R+  +     IE+ +   +  E    F+ +V  G+ +  
Sbjct: 182 KYGVKVVGITISEEQCKKAKERVKELGLEDKIEIRLQNYQDLEFENYFDKVVSVGMFEHV 241

Query: 302 -GQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
             + L      +   +   G+++       +H + A   G    N W   Y    G L S
Sbjct: 242 GKENLGLYFMKVKQVLKPGGSML-------LHSILAMFEGKT--NAWIDKYIFPGGYLPS 292

Query: 361 INTLRILV 368
              LR +V
Sbjct: 293 ---LREVV 297


>gi|86152995|ref|ZP_01071200.1| cyclopropane fatty acid synthase [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|85843880|gb|EAQ61090.1| cyclopropane fatty acid synthase [Campylobacter jejuni subsp.
           jejuni HB93-13]
          Length = 387

 Score = 40.7 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 69/188 (36%), Gaps = 16/188 (8%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG-TSGAVAK 242
           WL    S S     +    L+  Q    +   +     K G+ +LD   G G  S   A+
Sbjct: 123 WLDDTMSYSCAYFKEPNNTLYEAQIN-KIEHTLKKLDLKEGEKLLDIGCGWGWLSIMAAQ 181

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP- 301
           K     +GI + ++    A +R+  +     IE+ +   +  E    F+ +V  G+ +  
Sbjct: 182 KYGVKVVGITISEEQCKKAKERVKELGLEDKIEIRLQNYQDLEFENYFDKVVSVGMFEHV 241

Query: 302 -GQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
             + L      +   +   G+++       +H + A   G    N W   Y    G L S
Sbjct: 242 GKENLGLYFMKVKQVLKPGGSML-------LHSILAMFEGKT--NAWIDKYIFPGGYLPS 292

Query: 361 INTLRILV 368
              LR +V
Sbjct: 293 ---LREVV 297


>gi|242247063|ref|NP_001156076.1| hypothetical protein LOC100159947 [Acyrthosiphon pisum]
 gi|239791011|dbj|BAH72027.1| ACYPI001285 [Acyrthosiphon pisum]
          Length = 273

 Score = 40.7 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 210 EALLSRILVSSTKPGD---IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
             +  R +     P D   ++LD   GSG SG++A+     + G+++    + +A +R
Sbjct: 33  LEMAERCMELLMLPEDETCLLLDLGCGSGLSGSIAEDSGHIWFGMDISGSMLKVAKER 90


>gi|196010802|ref|XP_002115265.1| hypothetical protein TRIADDRAFT_59271 [Trichoplax adhaerens]
 gi|190582036|gb|EDV22110.1| hypothetical protein TRIADDRAFT_59271 [Trichoplax adhaerens]
          Length = 556

 Score = 40.7 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 10/89 (11%)

Query: 211 ALLSRILVSSTKPGD--IILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIAS 267
            +L R +          ++LD   G+GT G  +AK + R  IGIEM +D I+ A  R+ +
Sbjct: 385 EVLYRNIRDWCPTKATTVVLDICCGTGTIGILMAKNVNRV-IGIEMVEDAIEDA--RVNA 441

Query: 268 VQPLGNIELTVLTGKRTEPRVAFNLLVER 296
              L +I+       + E ++    LV+ 
Sbjct: 442 --ELNDIKNIEFICGKAEDKLP--TLVDN 466


>gi|110798639|ref|YP_696458.1| O-methyltransferase family protein [Clostridium perfringens ATCC
           13124]
 gi|168207860|ref|ZP_02633865.1| O-methyltransferase family protein [Clostridium perfringens E str.
           JGS1987]
 gi|168211397|ref|ZP_02637022.1| O-methyltransferase family protein [Clostridium perfringens B str.
           ATCC 3626]
 gi|168214249|ref|ZP_02639874.1| O-methyltransferase family protein [Clostridium perfringens CPE
           str. F4969]
 gi|168218249|ref|ZP_02643874.1| O-methyltransferase family protein [Clostridium perfringens NCTC
           8239]
 gi|182625696|ref|ZP_02953465.1| O-methyltransferase family protein [Clostridium perfringens D str.
           JGS1721]
 gi|110673286|gb|ABG82273.1| O-methyltransferase family protein [Clostridium perfringens ATCC
           13124]
 gi|170660821|gb|EDT13504.1| O-methyltransferase family protein [Clostridium perfringens E str.
           JGS1987]
 gi|170710659|gb|EDT22841.1| O-methyltransferase family protein [Clostridium perfringens B str.
           ATCC 3626]
 gi|170714328|gb|EDT26510.1| O-methyltransferase family protein [Clostridium perfringens CPE
           str. F4969]
 gi|177909098|gb|EDT71573.1| O-methyltransferase family protein [Clostridium perfringens D str.
           JGS1721]
 gi|182379734|gb|EDT77213.1| O-methyltransferase family protein [Clostridium perfringens NCTC
           8239]
          Length = 214

 Score = 40.7 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 5/48 (10%)

Query: 3   QKNSLAINENQNSIFEW----KDKIIKGNSISVLEKLPAKSVDLIFAD 46
           +++   IN  + +I ++    K  I++G+ + VLE L  +  D+IF D
Sbjct: 87  ERDDNMINYAKENIKKFGLEEKINILQGDCLEVLESLHDE-FDMIFMD 133


>gi|18310754|ref|NP_562688.1| O-methyltransferase family protein [Clostridium perfringens str.
           13]
 gi|18145435|dbj|BAB81478.1| probable O-methyltransferase [Clostridium perfringens str. 13]
          Length = 214

 Score = 40.7 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 5/48 (10%)

Query: 3   QKNSLAINENQNSIFEW----KDKIIKGNSISVLEKLPAKSVDLIFAD 46
           +++   IN  + +I ++    K  I++G+ + VLE L  +  D+IF D
Sbjct: 87  ERDDNMINYAKENIKKFGLEEKINILQGDCLEVLESLHDE-FDMIFMD 133


>gi|86150286|ref|ZP_01068512.1| cyclopropane-fatty-acyl-phospholipid synthase, putative
           [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|153951326|ref|YP_001397721.1| cyclopropane-fatty-acyl-phospholipid synthase, putative
           [Campylobacter jejuni subsp. doylei 269.97]
 gi|85839111|gb|EAQ56374.1| cyclopropane-fatty-acyl-phospholipid synthase, putative
           [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|152938772|gb|ABS43513.1| putative cyclopropane-fatty-acyl-phospholipid synthase
           [Campylobacter jejuni subsp. doylei 269.97]
 gi|315929214|gb|EFV08435.1| cyclopropane-fatty-acyl-phospholipid synthase family protein
           [Campylobacter jejuni subsp. jejuni 305]
          Length = 387

 Score = 40.7 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 69/188 (36%), Gaps = 16/188 (8%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG-TSGAVAK 242
           WL    S S     +    L+  Q    +   +     K G+ +LD   G G  S   A+
Sbjct: 123 WLDDTMSYSCAYFKEPNNTLYEAQIN-KIEHTLKKLDLKEGEKLLDIGCGWGWLSIMAAQ 181

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP- 301
           K     +GI + ++    A +R+  +     IE+ +   +  E    F+ +V  G+ +  
Sbjct: 182 KYGVKVVGITISEEQCKKAKERVKELGLEDKIEIRLQNYQDLEFENYFDKVVSVGMFEHV 241

Query: 302 -GQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
             + L      +   +   G+++       +H + A   G    N W   Y    G L S
Sbjct: 242 GKENLGLYFMKVKQVLKPGGSML-------LHSILAMFEGKT--NAWIDKYIFPGGYLPS 292

Query: 361 INTLRILV 368
              LR +V
Sbjct: 293 ---LREVV 297


>gi|254479291|ref|ZP_05092632.1| Methyltransferase small domain superfamily protein
           [Carboxydibrachium pacificum DSM 12653]
 gi|214034766|gb|EEB75499.1| Methyltransferase small domain superfamily protein
           [Carboxydibrachium pacificum DSM 12653]
          Length = 241

 Score = 40.7 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 18/118 (15%)

Query: 6   SLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFAD-PPYNLQLNGQLYRPDHSL 64
           S+AIN  +N I     KII G+   V + L  +  D +    PPY     G   +     
Sbjct: 78  SVAINSLENRI-----KIIHGDVREVEKLLGYEKFD-VVTSNPPYMPLYTGFEKK----- 126

Query: 65  VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                +  +  + +E Y      ++ A  ++LK  G  +++     +  +   L+  N
Sbjct: 127 -----EEAENIARYEVYGG-LEDFVKAAFKLLKFGGKFFMVHRPDRLVDVMYFLRKYN 178


>gi|217076536|ref|YP_002334252.1| ribosomal protein L11 methyltransferase [Thermosipho africanus
           TCF52B]
 gi|259534593|sp|B7IFP7|PRMA_THEAB RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|217036389|gb|ACJ74911.1| ribosomal protein L11 methyltransferase [Thermosipho africanus
           TCF52B]
          Length = 260

 Score = 40.7 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 10/132 (7%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYI 258
           G  LH T K   L ++ L    +PG  +LD   GS     +AKKL     +G++     +
Sbjct: 112 GTGLHDTTK---LSAKFLKKYLRPGMDVLDLGCGSAILSILAKKLGADRVLGVDNDPLAV 168

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + A + +       N+++ +              L+   +I   +IL  A  ++   +  
Sbjct: 169 EAAKENVER----NNVDVEIRQSDLFSNVDGKFDLIVSNII--AEILIEALKDLPKFLKK 222

Query: 319 DGTLISGTELGS 330
           DG +I    + S
Sbjct: 223 DGVVILSGIIDS 234


>gi|207111270|ref|ZP_03245432.1| type II DNA modification (methyltransferase [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 57

 Score = 40.7 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 15/66 (22%)

Query: 38  KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK 97
           +S+D I+ DPP+N          D + +D   DS         + +     L      L 
Sbjct: 7   ESIDCIYIDPPFNTG-------SDFAYIDKFQDS--------TWLSLIHNRLELAYDFLS 51

Query: 98  PNGTLW 103
           P G+ +
Sbjct: 52  PQGSFY 57


>gi|205356207|ref|ZP_03222973.1| putative cyclopropane fatty acyl phospholipid synthase
           [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205345812|gb|EDZ32449.1| putative cyclopropane fatty acyl phospholipid synthase
           [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 387

 Score = 40.7 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 69/188 (36%), Gaps = 16/188 (8%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG-TSGAVAK 242
           WL    S S     +    L+  Q    +   +     K G+ +LD   G G  S   A+
Sbjct: 123 WLDDTMSYSCAYFKESNNTLYEAQIN-KIEHTLKKLDLKEGEKLLDIGCGWGWLSIMAAQ 181

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP- 301
           K     +GI + ++    A +R+  +     IE+ +   +  E    F+ +V  G+ +  
Sbjct: 182 KYGVKVVGITISEEQCKKAKERVKELGLEDKIEIRLQNYQDLEFENYFDKVVSVGMFEHV 241

Query: 302 -GQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
             + L      +   +   G+++       +H + A   G    N W   Y    G L S
Sbjct: 242 GKENLGLYFMKVKQVLKPGGSML-------LHSILAMFEGKT--NAWIDKYIFPGGYLPS 292

Query: 361 INTLRILV 368
              LR +V
Sbjct: 293 ---LREVV 297


>gi|157127847|ref|XP_001661209.1| hypothetical protein AaeL_AAEL010949 [Aedes aegypti]
 gi|108872791|gb|EAT37016.1| conserved hypothetical protein [Aedes aegypti]
          Length = 275

 Score = 40.7 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 210 EALLSRILVSSTKPGD---IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
             +  R +     P D   +ILD   GSG SG+V ++    ++G+++ +  +++A +R
Sbjct: 34  VQMCERAIELLALPEDDTHLILDIGCGSGLSGSVLEEQGHVWVGVDIAKAMLEVAVER 91


>gi|86609190|ref|YP_477952.1| methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557732|gb|ABD02689.1| putative methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 183

 Score = 40.7 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 42/120 (35%), Gaps = 10/120 (8%)

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
            SG   L+   G    PT          ++     G   LD   G+GT GA A     +F
Sbjct: 5   ISGKRALQTPAGLGTRPTPGRVRQALFNILQGQVEGCRWLDLCCGAGTVGAEALCQGAAF 64

Query: 249 I-GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGL-IQPGQILT 306
           + GIE+      I     A V  LG     +    R         L+ RGL ++P   + 
Sbjct: 65  VAGIEIAAPACRIIRANWAKVAQLGQSFQVIQGDARK--------LLSRGLNLEPFDYVY 116


>gi|119715341|ref|YP_922306.1| protein of unknown function DUF1524 RloF [Nocardioides sp. JS614]
 gi|119536002|gb|ABL80619.1| protein of unknown function DUF1524 RloF [Nocardioides sp. JS614]
          Length = 726

 Score = 40.7 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 3/93 (3%)

Query: 270 PLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNIS---ATVCADGTLISGT 326
           P G+    V    + +  +    LV+ GLI PG  L     + +   A +  D  +    
Sbjct: 602 PEGHNGQVVDPQAKAQDWIELKHLVDAGLIAPGDKLIATHRDFAGREAEIGDDLRIHLDG 661

Query: 327 ELGSIHRVGAKVSGSETCNGWNFWYFEKLGELH 359
           +  S      +    +  NGW FW       L 
Sbjct: 662 KAFSTPSGAGQHLRKKATNGWYFWALADGRRLR 694


>gi|284926407|gb|ADC28759.1| cyclopropane-fatty-acyl-phospholipid synthase [Campylobacter jejuni
           subsp. jejuni IA3902]
          Length = 387

 Score = 40.7 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 69/188 (36%), Gaps = 16/188 (8%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG-TSGAVAK 242
           WL    S S     +    L+  Q    +   +     K G+ +LD   G G  S   A+
Sbjct: 123 WLDDTMSYSCAYFKEPNNTLYEAQIN-KIEHTLKKLDLKEGEKLLDIGCGWGWLSIMAAQ 181

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP- 301
           K     +GI + ++    A +R+  +     IE+ +   +  E    F+ +V  G+ +  
Sbjct: 182 KYGVKVVGITISEEQCKKAKERVKELGLEDKIEIRLQNYQDLEFENYFDKVVSVGMFEHV 241

Query: 302 -GQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
             + L      +   +   G+++       +H + A   G    N W   Y    G L S
Sbjct: 242 GKENLGLYFMKVKQVLKPGGSML-------LHSILAMFEGKT--NAWIDKYIFPGGYLPS 292

Query: 361 INTLRILV 368
              LR +V
Sbjct: 293 ---LREVV 297


>gi|237756738|ref|ZP_04585236.1| DNA methylase N-4/N-6 domain protein [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691096|gb|EEP60206.1| DNA methylase N-4/N-6 domain protein [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 183

 Score = 40.7 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLI 299
           VA  L+R+ IG E+ + ++DI  ++I+      +I  T +   + E +     +     I
Sbjct: 2   VANLLQRNAIGYEINEKFLDIIKQKIS----FKDILFTKIDVIKRETKTEVKPIDYTPSI 57

Query: 300 QPGQILTNAQG 310
           Q  +   + + 
Sbjct: 58  QDAKPEIDPKK 68


>gi|187778911|ref|ZP_02995384.1| hypothetical protein CLOSPO_02506 [Clostridium sporogenes ATCC
           15579]
 gi|187772536|gb|EDU36338.1| hypothetical protein CLOSPO_02506 [Clostridium sporogenes ATCC
           15579]
          Length = 185

 Score = 40.7 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSV--DLIFADPPY 49
            +   L     +N  FE   K    ++ S LE+   KS+  DLIF DPPY
Sbjct: 74  PETYPLLRENIKNLKFEDLCKSFNMDAYSALEEFARKSIVFDLIFIDPPY 123


>gi|317970453|ref|ZP_07971843.1| N6-adenine-specific methylase [Synechococcus sp. CB0205]
          Length = 182

 Score = 40.7 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG 55
           ++I+  +I  L     +S DL++ADPPY   L G
Sbjct: 96  QVIQQEAIRWLGSAQGESFDLVYADPPYAAGLYG 129


>gi|328718027|ref|XP_003246363.1| PREDICTED: hypothetical protein LOC100570604 [Acyrthosiphon pisum]
          Length = 432

 Score = 40.7 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 54/183 (29%), Gaps = 34/183 (18%)

Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
           ++        +          +   N I  +  N + +  G      H+  I +   P+ 
Sbjct: 142 MYTFYPSQIYYYKDAQKHIARYGQKNYIAPKPKNSIGSRDGYNQNGRHQKPIHSKTFPEN 201

Query: 162 KGYTFNY----------------DALKAANEDVQMRSDWLIPICSGSERL---RNKDGEK 202
             Y  NY                + L        +  D  +P    S R     N D   
Sbjct: 202 NRYNKNYKIENQHQNLIIKKTHSNQLNCQKNTNNLHQDKQLPTKYWSMRHLLFTNFDHGI 261

Query: 203 LHPTQKPEALLSRILVSST---KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           L  T+   ++   +L          +I+LDPF G+G             I  ++  D I 
Sbjct: 262 LLDTESFYSVCPEVLSYHIAKRCKNNIVLDPFCGAGV------------IACDIDPDKIR 309

Query: 260 IAT 262
           +A 
Sbjct: 310 LAR 312


>gi|229149520|ref|ZP_04277752.1| O-antigen biosynthesis protein [Bacillus cereus m1550]
 gi|228633866|gb|EEK90463.1| O-antigen biosynthesis protein [Bacillus cereus m1550]
          Length = 229

 Score = 40.7 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 59/157 (37%), Gaps = 18/157 (11%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L  +  E  +    P  LL  I     +    +LD    SG  GA  K+      GIE  
Sbjct: 8   LYEEKSEHYYNAANP-NLLKHIKKEWKE----VLDIGCSSGALGAAIKENGTRVSGIEAF 62

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNAQGNIS 313
            +  + A +R+  V  LG+IE   L  +  +   V F  ++E  L  P  ++      + 
Sbjct: 63  PEAAEKAKERLDHVI-LGDIEKIDLPYEEGQFDCVIFGDVLEH-LFNPWAVI----EKVK 116

Query: 314 ATVCADGTLISGTELGSIHRVGAKVSGSETCNG-WNF 349
             +  +G +++     SI  V      +    G W +
Sbjct: 117 PYIKQNGVILA-----SIPNVAHISVLAPLLAGNWTY 148


>gi|225016742|ref|ZP_03705934.1| hypothetical protein CLOSTMETH_00654 [Clostridium methylpentosum
           DSM 5476]
 gi|224950410|gb|EEG31619.1| hypothetical protein CLOSTMETH_00654 [Clostridium methylpentosum
           DSM 5476]
          Length = 306

 Score = 40.7 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 34/113 (30%), Gaps = 8/113 (7%)

Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSSTK 222
              Y       + V +  +W        E     +      T   E   L  + L     
Sbjct: 109 WQKYYHPIQVGKRVVICPEWEECSIQPDEVKVTLNPGMAFGTGTHETTRLCMQFLEEYVT 168

Query: 223 PGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDI-----ATKRIASVQ 269
           P   ILD   GSG        L  R  +G+++ +  + +     A  RI   Q
Sbjct: 169 PSSTILDVGCGSGILSITGLLLGARHAVGVDIDELAVKVAGENAALNRITEEQ 221


>gi|229056950|ref|ZP_04196345.1| O-antigen biosynthesis protein [Bacillus cereus AH603]
 gi|228720339|gb|EEL71913.1| O-antigen biosynthesis protein [Bacillus cereus AH603]
          Length = 232

 Score = 40.7 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 57/160 (35%), Gaps = 24/160 (15%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L  +  E  +    P  L   I     +    +LD    SG  GA  K+      GIE  
Sbjct: 11  LYEEKSEHYYNAINP-NLFKHIKKEWQE----VLDIGCSSGALGAAIKENGARVSGIEAF 65

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNA---QG 310
            +  + A +++  V  LG+IE   L  ++ +   V F  ++E         L +      
Sbjct: 66  PEAAEKAKEKLDHVI-LGDIETMDLPYEKEQFDCVIFGDVLEH--------LFDPWAVIK 116

Query: 311 NISATVCADGTLISGTELGSIHRVGAKVSGSETCNG-WNF 349
            +   +  +G +++     SI  V      +    G W +
Sbjct: 117 KVKPYIKENGVILA-----SIPNVAHISVLAPLLAGNWTY 151


>gi|332028635|gb|EGI68669.1| Uncharacterized methyltransferase WBSCR22 [Acromyrmex echinatior]
          Length = 275

 Score = 40.7 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD---IILDPFFGSGTSGAVAKK 243
           P     E+  NK        +    +  R +     P D   ++LD   GSG SG+V + 
Sbjct: 11  PEVYYDEKEANKYTLSSRMIEIQIHMSERAIELLLLPEDQSCLLLDIGCGSGLSGSVLED 70

Query: 244 LRRSFIGIEMKQDYIDIATKR 264
               +IG+++    +D+A +R
Sbjct: 71  QGHVWIGVDISSAMLDVAVER 91


>gi|328676888|gb|AEB27758.1| hypothetical protein FNFX1_0810 [Francisella cf. novicida Fx1]
          Length = 717

 Score = 40.7 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 20/136 (14%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N +   K   I+ + IS L+    K  D+IF DPP                  + +   D
Sbjct: 601 NKLDIKKHSFIQADCISWLKTNKDK-FDVIFLDPP----------------TFSNSKRMD 643

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                +         +      LK +G L+   +Y        +L+  N   ++ I   +
Sbjct: 644 DILDIQRDHELL---INLAMDSLKKDGILYFSNNYRRFKMSPQILEKFNCENIDKICLSR 700

Query: 134 SNPMPNFRGRRFQNAH 149
                      ++  +
Sbjct: 701 DFLSNKNIHNCWEIKY 716


>gi|253999626|ref|YP_003051689.1| methyltransferase [Methylovorus sp. SIP3-4]
 gi|253986305|gb|ACT51162.1| methyltransferase [Methylovorus sp. SIP3-4]
          Length = 214

 Score = 40.7 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 4/32 (12%)

Query: 23  IIKGNSISVL----EKLPAKSVDLIFADPPYN 50
           ++  ++  +L     KL A S D+IF DPPYN
Sbjct: 125 LLNADAAQLLNAPSAKLEAGSFDVIFLDPPYN 156


>gi|167624277|ref|YP_001674571.1| 23S rRNA m(2)G2445 methyltransferase [Shewanella halifaxensis
           HAW-EB4]
 gi|229560176|sp|B0TIX7|RLML_SHEHH RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|167354299|gb|ABZ76912.1| putative RNA methylase [Shewanella halifaxensis HAW-EB4]
          Length = 711

 Score = 40.7 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 45/140 (32%), Gaps = 25/140 (17%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N +   K + ++ N +  +++   +  DLIF DPP         +     + D+     D
Sbjct: 592 NGLNSDKYQFVQANCLQWMKRTHDR-FDLIFIDPP--------TFSNSKRMEDSFDVQRD 642

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                        A L    ++L P G +    +          L+ L   + N      
Sbjct: 643 HL-----------AMLTDVFKLLNPGGEIIFSNNKRKFKMEIAELEALGMSVKN-----I 686

Query: 134 SNPMPNFRGRRFQNAHETLI 153
            N       +R  + H T +
Sbjct: 687 DNQTLPLDYKRNPHIHNTWL 706


>gi|33594351|ref|NP_881995.1| hypothetical protein BP3472 [Bordetella pertussis Tohama I]
 gi|33595533|ref|NP_883176.1| hypothetical protein BPP0848 [Bordetella parapertussis 12822]
 gi|33599931|ref|NP_887491.1| hypothetical protein BB0942 [Bordetella bronchiseptica RB50]
 gi|33564426|emb|CAE43735.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
 gi|33565611|emb|CAE40257.1| conserved hypothetical protein [Bordetella parapertussis]
 gi|33567528|emb|CAE31441.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
 gi|332383762|gb|AEE68609.1| hypothetical protein BPTD_3424 [Bordetella pertussis CS]
          Length = 206

 Score = 40.7 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 19/29 (65%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYN 50
           +I  G+++ V+E++ A   DL+  DPP+ 
Sbjct: 107 RIHAGDAMQVIERMDASRFDLVLLDPPFG 135


>gi|326407897|gb|ADZ64968.1| SAM-dependent methyltransferase [Lactococcus lactis subsp. lactis
           CV56]
          Length = 196

 Score = 40.7 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 47/130 (36%), Gaps = 19/130 (14%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSG--TSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           K   +   +L    K  D+++D   G+G  T      +L  +    +++++ ++   KR+
Sbjct: 3   KQLEMAHWMLKDIIKTNDVVVDATMGNGYDTQFLA--ELGANVYAFDVQEEALNATEKRL 60

Query: 266 ASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL------------TNAQGNIS 313
                   I    L+   TEP V    LV  G  +  + +               + + S
Sbjct: 61  DDAGIKNQIFEKNLSNLLTEPSVN---LVLSGHEKLSEYVKEPIKAAIFNLGYLPKTDKS 117

Query: 314 ATVCADGTLI 323
               AD TL 
Sbjct: 118 VVTKADTTLT 127


>gi|281492941|ref|YP_003354921.1| SAM-dependent methyltransferase [Lactococcus lactis subsp. lactis
           KF147]
 gi|281376593|gb|ADA66079.1| SAM-dependent methyltransferase [Lactococcus lactis subsp. lactis
           KF147]
          Length = 196

 Score = 40.7 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 47/130 (36%), Gaps = 19/130 (14%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSG--TSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           K   +   +L    K  D+++D   G+G  T      +L  +    +++++ ++   KR+
Sbjct: 3   KQLEMAHWMLKDIIKTNDVVVDATMGNGYDTQFLA--ELGANVYAFDVQEEALNATEKRL 60

Query: 266 ASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL------------TNAQGNIS 313
                   I    L+   TEP V    LV  G  +  + +               + + S
Sbjct: 61  DDAGIKNQIFEKNLSNLLTEPSVN---LVLSGHEKLSEYVKEPIKAAIFNLGYLPKTDKS 117

Query: 314 ATVCADGTLI 323
               AD TL 
Sbjct: 118 VVTKADTTLT 127


>gi|229108775|ref|ZP_04238382.1| O-antigen biosynthesis protein [Bacillus cereus Rock1-15]
 gi|228674666|gb|EEL29903.1| O-antigen biosynthesis protein [Bacillus cereus Rock1-15]
          Length = 232

 Score = 40.7 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 59/157 (37%), Gaps = 18/157 (11%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L  +  E  +    P  LL  I     +    +LD    SG  GA  K+      GIE  
Sbjct: 11  LYEEKSEHYYNAANP-NLLKHIKKEWKE----VLDIGCSSGALGAAIKENGTRVSGIEAF 65

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNAQGNIS 313
            +  + A +R+  V  LG+IE   L  +  +   V F  ++E  L  P  ++      + 
Sbjct: 66  PEAAEKAKERLDHVI-LGDIEKIDLPYEEGQFDCVIFGDVLEH-LFNPWAVI----EKVK 119

Query: 314 ATVCADGTLISGTELGSIHRVGAKVSGSETCNG-WNF 349
             +  +G +++     SI  V      +    G W +
Sbjct: 120 PYIKQNGVILA-----SIPNVAHISVLAPLLAGNWTY 151


>gi|171778247|ref|ZP_02919453.1| hypothetical protein STRINF_00293 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282947|gb|EDT48371.1| hypothetical protein STRINF_00293 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 249

 Score = 40.7 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 13/75 (17%)

Query: 28  SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
           +++ L+ LP  S D+I+ DP +             S     + + D    +    AF+  
Sbjct: 157 NLAYLKTLPDNSYDVIYCDPMF-------------SERITESKNLDGLRQYANDTAFSEE 203

Query: 88  WLLACRRVLKPNGTL 102
           +L   +RV +    +
Sbjct: 204 FLREAKRVARKKIII 218


>gi|145346866|ref|XP_001417903.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578131|gb|ABO96196.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 281

 Score = 40.7 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 210 EALLSRILVSSTKPGDII----LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           E L  R +     P D +    LD   GSG SG    +L   +IG+++    +++A +R
Sbjct: 33  ERLTERAVELLNFPDDGVPRLLLDVGCGSGLSGDRLTELGHEWIGMDLSASMLEVAKER 91


>gi|118497390|ref|YP_898440.1| 23S rRNA m(2)G2445 methyltransferase [Francisella tularensis subsp.
           novicida U112]
 gi|195536081|ref|ZP_03079088.1| ribosomal L29e protein family protein, putative [Francisella
           tularensis subsp. novicida FTE]
 gi|208779185|ref|ZP_03246531.1| ribosomal L29e protein family, putative [Francisella novicida FTG]
 gi|229560158|sp|A0Q621|RLML_FRATN RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|118423296|gb|ABK89686.1| conserved protein of unknown function [Francisella novicida U112]
 gi|194372558|gb|EDX27269.1| ribosomal L29e protein family protein, putative [Francisella
           tularensis subsp. novicida FTE]
 gi|208744985|gb|EDZ91283.1| ribosomal L29e protein family, putative [Francisella novicida FTG]
          Length = 718

 Score = 40.7 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 20/136 (14%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N +   K   I+ + IS L+    K  D+IF DPP                  + +   D
Sbjct: 601 NKLDIKKHSFIQADCISWLKTNKDK-FDVIFLDPP----------------TFSNSKRMD 643

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                +         +      LK +G L+   +Y        +L+  N   ++ I   +
Sbjct: 644 DILDIQRDHELL---INLAMDSLKKDGILYFSNNYRRFKMSPQILEKFNCENIDKICLSR 700

Query: 134 SNPMPNFRGRRFQNAH 149
                      ++  +
Sbjct: 701 DFLSNKNIHNCWEIKY 716


>gi|62262302|gb|AAX78059.1| unknown protein [synthetic construct]
          Length = 316

 Score = 40.7 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 85/257 (33%), Gaps = 31/257 (12%)

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
           F   E Y     A   +  R+ K +  + +   Y N   I T++ N+     N I     
Sbjct: 42  FDRIENYLFDNDA--GSVTRIDKSDDIISITVLYENHHDIDTIIANIKQKFENIIESEI- 98

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
                        ++E +           + ++Y+ ++  N ++ +  +W  P       
Sbjct: 99  -------------SYEII---KDQQWEAAWLYDYEPIEIGN-NIVVYPNWRQPPQDNKHT 141

Query: 195 LRNKDGEKLHPTQKPE--ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GI 251
               D          E   +    L         +LD   G+G     A KL   +  GI
Sbjct: 142 YIIVDPSIAFGCGNHETTKMCLEWLEQHVSKDTTVLDYGCGTGVLAIGAVKLGAKYAEGI 201

Query: 252 EMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
           ++  + I+ +   I + Q     + T  +     P   F+L+V         +L +  GN
Sbjct: 202 DIDPNSIESS---IKNAQENDVTDKTHFSDN--PPTQQFDLVVANIF---SNVLISLVGN 253

Query: 312 ISATVCADGTLISGTEL 328
           I+ ++   G L     +
Sbjct: 254 ITTSLKKGGRLALSGII 270


>gi|168181643|ref|ZP_02616307.1| ribosomal protein L11 methyltransferase [Clostridium botulinum Bf]
 gi|237796410|ref|YP_002863962.1| ribosomal protein L11 methyltransferase [Clostridium botulinum Ba4
           str. 657]
 gi|259534499|sp|C3L3G5|PRMA_CLOB6 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|182675116|gb|EDT87077.1| ribosomal protein L11 methyltransferase [Clostridium botulinum Bf]
 gi|229261819|gb|ACQ52852.1| ribosomal protein L11 methyltransferase [Clostridium botulinum Ba4
           str. 657]
          Length = 312

 Score = 40.7 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 57/181 (31%), Gaps = 8/181 (4%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE-- 210
           +        +     Y      +  + ++  W        E +   D      T   E  
Sbjct: 104 VHKVNEEDWENNWKKYYKPTKVSNKIVIKPIWENYDKKQEEIIVELDPGMAFGTGTHETT 163

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQ 269
            +    L    K    + D   GSG     A KL  +  IG+++    +  + + I    
Sbjct: 164 RMCINALEKHIKEDRTVFDIGCGSGILSIAAAKLGAKHVIGVDLDPVAVKSSKENI-KYN 222

Query: 270 PLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELG 329
            L NIE  +L G   E       +V   +I    ++      + A +  DG  I+   + 
Sbjct: 223 NLDNIE--ILEGNLMEVVEGRANIVVANII--ADVIIFLTEGVKAFIEKDGYFIASGIIN 278

Query: 330 S 330
           S
Sbjct: 279 S 279


>gi|126179009|ref|YP_001046974.1| putative RNA methylase [Methanoculleus marisnigri JR1]
 gi|125861803|gb|ABN56992.1| N2-methylguanosine tRNA methyltransferase [Methanoculleus
           marisnigri JR1]
          Length = 317

 Score = 40.7 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 203 LHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
            HP      +   ++ +S  +PG+++ DPF G+G     A+++    +G +     +D
Sbjct: 155 FHPGVMMPRMARALVNISLVRPGEVVYDPFCGTGGILLEAREIGVRILGSDFDPAMVD 212


>gi|258645267|ref|ZP_05732736.1| precorrin-6y c5,15-methyltransferase [Dialister invisus DSM 15470]
 gi|260402617|gb|EEW96164.1| precorrin-6y c5,15-methyltransferase [Dialister invisus DSM 15470]
          Length = 193

 Score = 40.7 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 17/174 (9%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGT-SGAVAKKLRR-SFIGIEMKQDYIDIAT 262
           P  K E     ++ +   P D ++D   G+G+ +   A    +     IEM  + ID+  
Sbjct: 17  PMTKAEVRAMIMVKARIAPEDTVVDIGAGTGSITVEAALCANKGIVYAIEMNPEGIDLIK 76

Query: 263 KRIASVQPLG--NIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           +   + +  G  NI   + +       +    +V  G    G  +       +  +  DG
Sbjct: 77  Q---NAEKFGCRNIYPVLGSAPEAMAELPMTDVVIIG--GSGGNMHEILNKATNILRPDG 131

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
            ++  +       V A+ +G E  N +    F   G    IN LR L R  L+N
Sbjct: 132 RIVLTS-------VTAETTG-EVVNEFKDRPFTFDGFQMQINRLRKLGRYHLFN 177


>gi|308809465|ref|XP_003082042.1| unnamed protein product [Ostreococcus tauri]
 gi|116060509|emb|CAL55845.1| unnamed protein product [Ostreococcus tauri]
          Length = 284

 Score = 40.7 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKL--RRSFIGIEMKQDYIDIATKRIAS 267
           R LV+S +    ++D   G+G+       L  +  F+GI++    IDI  +RIA 
Sbjct: 55  RSLVASGRDVRTVVDFGCGTGSVVMACAALFPQLKFVGIDLNPVSIDILNRRIAE 109


>gi|108804210|ref|YP_644147.1| hypothetical protein Rxyl_1372 [Rubrobacter xylanophilus DSM 9941]
 gi|108765453|gb|ABG04335.1| conserved hypothetical protein 95 [Rubrobacter xylanophilus DSM
           9941]
          Length = 177

 Score = 40.7 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 2/40 (5%)

Query: 18  EWKDKIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNG 55
           E + +++ G+++  +E+L    K  +LIFADPPY +   G
Sbjct: 87  EGRARVVVGDAVREMERLLRDGKVFNLIFADPPYRIAPAG 126


>gi|238917056|ref|YP_002930573.1| hypothetical protein EUBELI_01126 [Eubacterium eligens ATCC 27750]
 gi|238872416|gb|ACR72126.1| Hypothetical protein EUBELI_01126 [Eubacterium eligens ATCC 27750]
          Length = 389

 Score = 40.7 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 206 TQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            Q+ E L  + + ++     D ++D + G GT G VA K     IG+E+  + +  A 
Sbjct: 224 HQQTEKLYKKAIQLADISKNDTVIDAYCGIGTIGIVASKKAGKVIGVELNSEAVSDAK 281


>gi|150399663|ref|YP_001323430.1| methyltransferase small [Methanococcus vannielii SB]
 gi|150012366|gb|ABR54818.1| methyltransferase small [Methanococcus vannielii SB]
          Length = 260

 Score = 40.7 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 56/143 (39%), Gaps = 22/143 (15%)

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ---DYID--IATKR 264
            ++    + +S K GD + D   GSG    VA K  +    +E+     +Y    I T  
Sbjct: 21  VSVFKEAIETSVKKGDTVFDLGTGSGILAMVAAKDAKKVYAVELDPITTEYTKRNITTNN 80

Query: 265 IASVQPLGNIELTVLTGKR--------------TEPRVA-FNLLVERGLIQPGQILTNAQ 309
             ++  + +        ++              TEP+V   N +++RGL++ G I+   +
Sbjct: 81  FENIIVIESDATYYPFKEKADLVIAELLDTGLITEPQVPVLNSIIKRGLLKEGGIIIPKE 140

Query: 310 GNISATVCAD--GTLISGTELGS 330
              +A + A     +    E+ S
Sbjct: 141 VYNTAQIVAAKMNHIYYDEEVTS 163


>gi|303327995|ref|ZP_07358434.1| putative methyltransferase [Desulfovibrio sp. 3_1_syn3]
 gi|302861821|gb|EFL84756.1| putative methyltransferase [Desulfovibrio sp. 3_1_syn3]
          Length = 165

 Score = 40.7 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 22/69 (31%), Gaps = 10/69 (14%)

Query: 36  PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRV 95
           P  S  L+  DPP +L   G               +W              A    C RV
Sbjct: 60  PDDSFHLVVFDPP-HLDRCGPRSWQRKKYGKLTKGTW---------REDLAAGFSECWRV 109

Query: 96  LKPNGTLWV 104
           LKP GTL  
Sbjct: 110 LKPGGTLIF 118


>gi|257878302|ref|ZP_05657955.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           1,230,933]
 gi|257880916|ref|ZP_05660569.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           1,231,502]
 gi|257889497|ref|ZP_05669150.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           1,231,410]
 gi|257892562|ref|ZP_05672215.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           1,231,408]
 gi|258616177|ref|ZP_05713947.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           DO]
 gi|260559853|ref|ZP_05832032.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           C68]
 gi|293559682|ref|ZP_06676210.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           E1162]
 gi|293569926|ref|ZP_06681013.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           E1071]
 gi|294622413|ref|ZP_06701437.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           U0317]
 gi|314938643|ref|ZP_07845923.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           TX0133a04]
 gi|314944087|ref|ZP_07850750.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           TX0133C]
 gi|314950325|ref|ZP_07853606.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           TX0082]
 gi|314992317|ref|ZP_07857751.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           TX0133B]
 gi|314996899|ref|ZP_07861903.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           TX0133a01]
 gi|257812530|gb|EEV41288.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           1,230,933]
 gi|257816574|gb|EEV43902.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           1,231,502]
 gi|257825857|gb|EEV52483.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           1,231,410]
 gi|257828941|gb|EEV55548.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           1,231,408]
 gi|260074077|gb|EEW62400.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           C68]
 gi|291587674|gb|EFF19551.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           E1071]
 gi|291598057|gb|EFF29165.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           U0317]
 gi|291606357|gb|EFF35763.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           E1162]
 gi|313589006|gb|EFR67851.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           TX0133a01]
 gi|313593133|gb|EFR71978.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           TX0133B]
 gi|313597314|gb|EFR76159.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           TX0133C]
 gi|313642031|gb|EFS06611.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           TX0133a04]
 gi|313643342|gb|EFS07922.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           TX0082]
          Length = 388

 Score = 40.7 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 69/211 (32%), Gaps = 14/211 (6%)

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
            + L W     K        D     +        WL P  + S    N   + L   Q 
Sbjct: 94  KDYLKWLPKKEKHTKQKNKEDIHAHYDLGNDFYKLWLDPTLTYSCAYFNTPEDTLEQAQI 153

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVA-KKLRRSFIGIEMKQDYIDIATKRIAS 267
              +   +     K G+ +LD   G GT    A K+      GI + ++  D+ TKRI  
Sbjct: 154 N-KVHHILDKLFIKEGETLLDIGCGWGTLMFTATKEYNVKATGITLSEEQYDLITKRIKE 212

Query: 268 VQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP--GQILTNAQGNISATVCADGTLISG 325
            + L +    +L   R      F+ +   G+ +    + L      +   +   GT +  
Sbjct: 213 -EHLEDKCRVLLMDYRELKGETFDHITSVGMFEHVGSENLEGYFKVVKDLLKPKGTAL-- 269

Query: 326 TELGSIHRVGAKVSGSETCNGWNFWYFEKLG 356
                IH +  +  G+   N W   Y    G
Sbjct: 270 -----IHGISRQQGGAT--NAWINKYIFPGG 293


>gi|197116641|ref|YP_002137068.1| ribosomal protein L11 methyltransferase [Geobacter bemidjiensis
           Bem]
 gi|226710086|sp|B5E9X4|PRMA_GEOBB RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|197086001|gb|ACH37272.1| ribosomal protein L11 methyltransferase [Geobacter bemidjiensis
           Bem]
          Length = 306

 Score = 40.7 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 47/135 (34%), Gaps = 13/135 (9%)

Query: 200 GEKLHPTQKPE-ALLSRILVSST--KPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQ 255
           G   HPT K     L RI   ++  K    +LD   GSG     A  L    I  +++  
Sbjct: 145 GTGAHPTTKMCLEALERICFDASGGKLPSPVLDVGTGSGVLSIAAALLGAKEIVAVDIDP 204

Query: 256 DYIDIATKRIA--SVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNIS 313
           + + +  + +    V  L     T L       RV    ++   L++    LT       
Sbjct: 205 EAVRVTMENLELNGVADLVAASTTSLEQLPGGFRVVVANILAEELVRLADELT------- 257

Query: 314 ATVCADGTLISGTEL 328
           A V   G LI    L
Sbjct: 258 ARVAPGGWLILSGIL 272


>gi|167769486|ref|ZP_02441539.1| hypothetical protein ANACOL_00820 [Anaerotruncus colihominis DSM
           17241]
 gi|167668454|gb|EDS12584.1| hypothetical protein ANACOL_00820 [Anaerotruncus colihominis DSM
           17241]
          Length = 306

 Score = 40.7 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 3/100 (3%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSSTKPG 224
            Y       E + +   W     +  E +   D      T   E   L  ++L  +  PG
Sbjct: 111 KYYFPTKIGERLVICPSWESYAPAPGETVLTMDPGMAFGTGTHETTRLCIQLLEEAVTPG 170

Query: 225 DIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
             +LD   GSG     A     R+ +G+++ +  + +A +
Sbjct: 171 MDLLDIGTGSGILAIAALLFGARAAVGVDIDEVAVRVARE 210


>gi|270308672|ref|YP_003330730.1| adenine-specific DNA methylase [Dehalococcoides sp. VS]
 gi|270154564|gb|ACZ62402.1| adenine-specific DNA methylase [Dehalococcoides sp. VS]
          Length = 418

 Score = 40.7 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 189 CSGSERLRNKDGEKLH--PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +  E    +D    H  P +    +  ++L   +  G ++ DP+ G+GTS   A     
Sbjct: 13  WTFKESNVREDTHCYHDYPARMIPQIAQQLLKLYSN-GGLLFDPYCGTGTSLVEAMTYGI 71

Query: 247 SFIGIEMKQDYIDIATK 263
             +G ++      IA  
Sbjct: 72  DAVGTDINPLACLIARA 88


>gi|152996994|ref|YP_001341829.1| 50S ribosomal protein L11 methyltransferase [Marinomonas sp. MWYL1]
 gi|189037698|sp|A6VZL5|PRMA_MARMS RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|150837918|gb|ABR71894.1| ribosomal protein L11 methyltransferase [Marinomonas sp. MWYL1]
          Length = 296

 Score = 40.7 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 43/134 (32%), Gaps = 16/134 (11%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  NY  ++         S   +P  +    + +     G   HPT    AL  + 
Sbjct: 97  WEREWMDNYHPIQFGERLWVCPSWREVPDPNAVTLMLDPGLAFGTGTHPTT---ALCLQW 153

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S       I+D   GSG  G     L   + +GI++    +              N E
Sbjct: 154 LDSIDCKDKTIIDYGCGSGILGIAGLLLGANNMVGIDIDPQAVQATE---------ANAE 204

Query: 276 LTVLTGKRTEPRVA 289
              +   R E ++ 
Sbjct: 205 RNKIDPSRLEVKLP 218


>gi|154250324|ref|YP_001411149.1| ribosomal L11 methyltransferase [Fervidobacterium nodosum Rt17-B1]
 gi|154154260|gb|ABS61492.1| ribosomal L11 methyltransferase [Fervidobacterium nodosum Rt17-B1]
          Length = 247

 Score = 40.7 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 63/184 (34%), Gaps = 37/184 (20%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNK----------DGEKLHPTQKPEALLSRI 216
           ++           +   W+ P+      L++K           G  LH T K  A+    
Sbjct: 56  DWLKNIITEPFEMIEDVWIDPLEHDLSHLKDKIVLRIPQGLAFGTGLHQTTKMSAMY--- 112

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK-----------R 264
           L    KPG  +LD   GSG  G +AKKL     + ++     +++A +           R
Sbjct: 113 LKRYLKPGMDVLDLGCGSGILGILAKKLGANRVLAVDNDPLAVEVAMENAERNKVDIEVR 172

Query: 265 IASV-QPLGNIELTVLTGKRTEPRVAF-----------NLLVERGLIQPGQILTNAQGNI 312
           ++ +   +      +++    E  V              +L+  G+I P   L +    I
Sbjct: 173 LSDLFSNVDGKFDIIVSNIIAEILVEMLKNAGNYLKEGGILILSGIILPKVNLFDQYNVI 232

Query: 313 SATV 316
              V
Sbjct: 233 EKMV 236


>gi|330842901|ref|XP_003293406.1| hypothetical protein DICPUDRAFT_50950 [Dictyostelium purpureum]
 gi|325076259|gb|EGC30060.1| hypothetical protein DICPUDRAFT_50950 [Dictyostelium purpureum]
          Length = 259

 Score = 40.7 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 33/260 (12%), Positives = 80/260 (30%), Gaps = 43/260 (16%)

Query: 3   QKNSLAINENQNSIFE---WKDKIIKGNSISVLEKLPAKSVD---LIFADPPYNLQLNGQ 56
              +L +N+ +  I +   ++D +   +++  L      ++D    +    P        
Sbjct: 2   DVETLQLNKEKGLIDKFGVYRD-VYCMDAVQWLN---NNAIDPNTSVITSLP-------- 49

Query: 57  LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN--GTLWVIGSYHNIFRI 114
               D + V   T         E Y  +    +      L  N  G ++     ++    
Sbjct: 50  ----DITEVSGFT--------LEQYKQWFTNTVQLIASKLSDNNVGIVYQTDIKYHWKHD 97

Query: 115 GTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
            ++++         +   ++        +    +  T +  + +  +  +   +      
Sbjct: 98  RSLIEEYIDKGYLAMKGIEAAGCKVVWHKIMAASDLTKMIITKNKSSFTHMICFAKQPTN 157

Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
            +      D          R    +  ++  +        R + S T     +LDPF G 
Sbjct: 158 IKYQDNTPDINTRGDMVWSRAMGLNACEISTS------YVRGIGSHT-----VLDPFCGK 206

Query: 235 GTSGAVAKKLRRSFIGIEMK 254
           G+  AVA     + IGI++ 
Sbjct: 207 GSVLAVANVYGLNGIGIDLS 226


>gi|315169428|gb|EFU13445.1| ParB-like nuclease domain protein [Enterococcus faecalis TX1342]
          Length = 444

 Score = 40.7 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 53/158 (33%), Gaps = 26/158 (16%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           I  +S+++   +  +S DL+F  PPY    + ++Y  D   +  +        S+E +  
Sbjct: 278 ICDDSLNIDHHIEDESQDLLFTCPPY---ADLEVYSDDERDISNM--------SYEEFAE 326

Query: 84  FTRAWLLACRRVLKPNG----TLWVIGSYHNIFR-----IGTMLQNLNFWILNDIVWRKS 134
                L    R LK N     T+  +      ++               +  ND++   +
Sbjct: 327 VYSEILKRSARKLKDNRFAVVTISDVRDKKGFYQDLTGLTKRAFSKEGLYFYNDMILLNA 386

Query: 135 NPMPNFRGRRFQN------AHETLIWASPSPKAKGYTF 166
               + R RR  N       H+ ++            +
Sbjct: 387 VGSGSLRARRLMNNRKVTRMHQNVLVFYKGNPKNINQY 424


>gi|314951097|ref|ZP_07854159.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           TX0133A]
 gi|313596731|gb|EFR75576.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           TX0133A]
          Length = 388

 Score = 40.7 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 69/211 (32%), Gaps = 14/211 (6%)

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
            + L W     K        D     +        WL P  + S    N   + L   Q 
Sbjct: 94  KDYLKWLPKKEKHTKQKNKEDIHAHYDLGNDFYKLWLDPTLTYSCAYFNTPEDTLEQAQI 153

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVA-KKLRRSFIGIEMKQDYIDIATKRIAS 267
              +   +     K G+ +LD   G GT    A K+      GI + ++  D+ TKRI  
Sbjct: 154 N-KVHHILDKLFIKEGETLLDIGCGWGTLMFTATKEYNVKATGITLSEEQYDLITKRIKE 212

Query: 268 VQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP--GQILTNAQGNISATVCADGTLISG 325
            + L +    +L   R      F+ +   G+ +    + L      +   +   GT +  
Sbjct: 213 -EHLEDKCRVLLMDYRELKGETFDHITSVGMFEHVGSENLEGYFKVVKDLLKPKGTAL-- 269

Query: 326 TELGSIHRVGAKVSGSETCNGWNFWYFEKLG 356
                IH +  +  G+   N W   Y    G
Sbjct: 270 -----IHGISRQQGGAT--NAWINKYIFPGG 293


>gi|298705971|emb|CBJ29092.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 510

 Score = 40.7 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 10/78 (12%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
           +LDPF G GT    A +  R  +G ++    + ++  R                 +  E 
Sbjct: 118 VLDPFVGGGTVIVEALRAGRLGVGSDVSPLSLLVSRGR----------TWIASDSQLEEL 167

Query: 287 RVAFNLLVERGLIQPGQI 304
           R A   + E    + G+ 
Sbjct: 168 REAVRSVCEAAAAKLGET 185


>gi|163748711|ref|ZP_02155964.1| ribosomal protein L11 methyltransferase [Shewanella benthica KT99]
 gi|161331821|gb|EDQ02625.1| ribosomal protein L11 methyltransferase [Shewanella benthica KT99]
          Length = 293

 Score = 40.7 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 54/171 (31%), Gaps = 12/171 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   IP       + +     G   HPT    AL    
Sbjct: 95  WEREWMDNFHPIQFGKRLWICPSWREIPDPQAVNVILDPGLAFGTGTHPTT---ALCLEW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L         ++D   GSG     A KL  +   GI++    I+ +    A+ +     +
Sbjct: 152 LDGLELTDKEVIDFGCGSGILAVAALKLGAKKVTGIDIDYQAIEASK---ANAERNDVQD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGT 326
              L     +P+     ++   ++     L      I+  V + G L    
Sbjct: 209 RLSLYLPEEQPQDLKADILVANIL--AGPLRELAPLIAEKVKSGGQLALSG 257


>gi|329769536|ref|ZP_08260946.1| hypothetical protein HMPREF0433_00710 [Gemella sanguinis M325]
 gi|328838751|gb|EGF88349.1| hypothetical protein HMPREF0433_00710 [Gemella sanguinis M325]
          Length = 253

 Score = 40.7 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 13/72 (18%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           + +  L+K    S D+I+ DP +            H++ +++  S     +   Y+  T 
Sbjct: 158 DCLEYLKKCEDNSFDIIYFDPMF-----------SHNIKESMNLS--GIETLADYNFPTE 204

Query: 87  AWLLACRRVLKP 98
            +L   RRV K 
Sbjct: 205 VFLEEARRVAKN 216


>gi|317152249|ref|YP_004120297.1| type 11 methyltransferase [Desulfovibrio aespoeensis Aspo-2]
 gi|316942500|gb|ADU61551.1| Methyltransferase type 11 [Desulfovibrio aespoeensis Aspo-2]
          Length = 207

 Score = 40.7 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ-PLGNIELTVLTG 281
              ++D   G+G    +  +  R  IG+++    +D A  R    +  LG+   T L G
Sbjct: 36  DGPVVDLCCGTGVVAGMVARTGREAIGVDLSPAMLDRARARHGGARFLLGDATATGLAG 94


>gi|228959605|ref|ZP_04121286.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228800097|gb|EEM47033.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 390

 Score = 40.7 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 78/214 (36%), Gaps = 12/214 (5%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
            + S    +K    +  A      +   +  WL    + S      + + L   Q    +
Sbjct: 96  YFKSKWNFSKQKNKDDIAHHYDIGNDFYKL-WLDETMTYSCAYFQNEQDSLTTAQ-HNKV 153

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
              +   + + GD +LD   G G    A AK+     +G+ + ++     ++RI   + L
Sbjct: 154 NHILKKLNLQKGDTLLDIGCGWGELITAAAKQYGVKAMGVTLSEEQFAKTSERIKQ-EGL 212

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLI-QPGQILTNAQGNISATVCADGTLISGTELGS 330
            ++    L   R      F+ +V  G+I   G+           T+  DG +        
Sbjct: 213 TDLVEVSLLDYRDIKNRKFDKIVSVGMIEHVGKDNITQYFETVNTLLNDGGISL------ 266

Query: 331 IHRVGAKVSGSETCNGWNFWYFEKLGELHSINTL 364
           +H + +  +G  T NGW   Y    G + ++N L
Sbjct: 267 LHCITSPANGGAT-NGWIEKYIFPGGYVPAVNEL 299


>gi|219870888|ref|YP_002475263.1| putative SAM-dependent methyltransferase [Haemophilus parasuis
           SH0165]
 gi|219691092|gb|ACL32315.1| possible SAM-dependent methyltransferase [Haemophilus parasuis
           SH0165]
          Length = 251

 Score = 40.7 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 47/113 (41%), Gaps = 7/113 (6%)

Query: 214 SRILVSSTKPGDI-ILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIA--SVQ 269
             ++ +     D  +L+     GT+   +A++     IGI++ ++ ++ A + I    V+
Sbjct: 28  DWLIANGDFRKDKKVLEVACNMGTTAIEIAQQFGCQVIGIDLDEEALEKAQQNIKEHKVE 87

Query: 270 PLGNIELTVLTGKRTEPRVAFNLLVERGLIQ--PGQILTNAQGNISATVCADG 320
            L  ++    T K      +F++++   ++   P +    A       +  +G
Sbjct: 88  ELVQVQRANAT-KLPFEDNSFDIIINEAMLTMLPQEAKEKAIREYLRVLKPNG 139


>gi|93006472|ref|YP_580909.1| ribosomal protein L11 methyltransferase [Psychrobacter
           cryohalolentis K5]
 gi|122415150|sp|Q1QA78|PRMA_PSYCK RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|92394150|gb|ABE75425.1| LSU ribosomal protein L11P methyltransferase [Psychrobacter
           cryohalolentis K5]
          Length = 308

 Score = 40.7 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 9/104 (8%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL----HPTQKPEALLSR 215
             + +  NY  ++ AN D+ +  +WL P    +  +    G       H T +   L   
Sbjct: 98  WEREWMSNYKPIECAN-DLWIVPNWLTPPNPEATNIIMDPGLAFGTGYHATTR---LCLD 153

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
            L        +++D   GSG  G  A  L  R    +++    +
Sbjct: 154 WLTEQDLTDKVVIDYGCGSGILGIAALLLGARHVYAVDIDPQAV 197


>gi|327481990|gb|AEA85300.1| ribosomal protein L11 methyltransferase [Pseudomonas stutzeri DSM
           4166]
          Length = 293

 Score = 40.7 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 61/193 (31%), Gaps = 15/193 (7%)

Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
             G   ++  E +         + +  N+  ++  +    + S    P       L +  
Sbjct: 77  RGGDLPEHQTEVI---EDQDWERSWMDNFQPMRFGHRLWIVPSWHAAPEPDAVNLLLDPG 133

Query: 200 ---GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQ 255
              G   HPT    AL    L + T     +LD   GSG        L     +G ++  
Sbjct: 134 LAFGTGTHPTT---ALCLEWLDAQTLDDRSLLDFGCGSGILAIAGLLLGAHQAVGTDIDP 190

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
             ++ +     + +     E   L      P+   +++V    I  G  L +    I+A 
Sbjct: 191 QALEASRD--NAERNGIAPERFTLYLPEQLPQEPADVVVAN--ILAGP-LVSLAQQITAL 245

Query: 316 VCADGTLISGTEL 328
           V   G L     L
Sbjct: 246 VKPGGRLALSGIL 258


>gi|320355161|ref|YP_004196500.1| plasmid-like protein [Desulfobulbus propionicus DSM 2032]
 gi|320123663|gb|ADW19209.1| plasmid-related protein [Desulfobulbus propionicus DSM 2032]
          Length = 346

 Score = 40.7 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 4/77 (5%)

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGSGTSGAV-AKKLRRSFIGI 251
           RL ++     +PT  PE++  ++        D  ILDP  G G + A  A        GI
Sbjct: 3   RLGSQAKAGFYPT--PESIRGQLKELLDIEEDARILDPCCGEGQTLAALADGTGAITYGI 60

Query: 252 EMKQDYIDIATKRIASV 268
           E+  D    A +RI  +
Sbjct: 61  ELDHDRATEARQRIHHL 77


>gi|270299660|gb|ACZ68466.1| modification methylase [Staphylococcus aureus]
          Length = 710

 Score = 40.7 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 67/227 (29%), Gaps = 31/227 (13%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           + I   ++  +++++   S DLI+ D PYN +                    D +   E 
Sbjct: 250 NDIYCKDANQLVKEI---SADLIYIDTPYNSR-----------------QYSDAYHLLEN 289

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
              + +  +    + +          S +          +L   I    +    N M   
Sbjct: 290 IVEWKKPPVTGVAKKMVDRSKTKSNYSTNKAPE---AFADLIKNIKARYILVSYNNMARK 346

Query: 141 RGRRFQ---NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
              R     +  E +       K K +  ++ A       +    + L       + ++N
Sbjct: 347 GNGRSNAKISNEEIIHTLEKKGKVKVFETSFQAYTTGKSVIDDHKEILYLCEVSQKEVKN 406

Query: 198 KDGEKLHP-----TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
           K      P     T     LL +I+    K  +  +D F G  +   
Sbjct: 407 KQKNHYTPSAINYTGSKYRLLDQIITLFPKEYNNFIDLFAGGSSVAI 453


>gi|315231542|ref|YP_004071978.1| hypothetical protein TERMP_01780 [Thermococcus barophilus MP]
 gi|315184570|gb|ADT84755.1| hypothetical protein TERMP_01780 [Thermococcus barophilus MP]
          Length = 283

 Score = 40.7 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 45/115 (39%), Gaps = 29/115 (25%)

Query: 15  SIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
            +F  ++ ++++G+   V+ K   ++ ++I  DPP    L G+LY               
Sbjct: 175 EVFHSQNIQVVQGDVFDVIRKFRDETFNVIVHDPP-RFSLAGELY--------------- 218

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNLNFWILN 127
                      +  +     RVLKP G ++  +G+    FR   + + +   +  
Sbjct: 219 -----------SEEFYAELFRVLKPGGRIFHYVGNPGKKFRRKDLQRGVMERLRK 262


>gi|118444755|ref|YP_878564.1| ribosomal protein L11 methyltransferase [Clostridium novyi NT]
 gi|166223410|sp|A0Q1R2|PRMA_CLONN RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|118135211|gb|ABK62255.1| ribosomal protein L11 methyltransferase [Clostridium novyi NT]
          Length = 312

 Score = 40.7 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 5/121 (4%)

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSR 215
              A  +   Y   K  NE + ++  W       +E +   D      T   E   L  +
Sbjct: 111 QDWANNWKKYYKPTKIGNE-IVVKPTWEDYNKKDNEIVIELDPGMAFGTGTHETTRLCVK 169

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNI 274
            L        ++ D   GSG     A KL  +  +G+++    +D A + +  +  L NI
Sbjct: 170 ALEEYVNEDSVVFDIGTGSGILSIAAAKLNAKHVVGVDLDPVAVDAAKENV-ELNNLDNI 228

Query: 275 E 275
           E
Sbjct: 229 E 229


>gi|299117366|emb|CBN75322.1| conserved unknown protein (Partial) [Ectocarpus siliculosus]
          Length = 704

 Score = 40.7 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 41  DLIFADPPYNLQLNG-QLYRPDHSLVDAVTDSWDKFSSFEAY--DAFTRAWLLACRRVLK 97
           D I  DPPY ++    +  R   +      + +D     + Y  +      L    + L 
Sbjct: 295 DCIVTDPPYGIRAGARKSGREGEARTVKPEERFDHMPHTQHYPVEDVLVDLLEVAAQTLV 354

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
             G L  + +    F +    ++L      ++       +     RR     +T  +
Sbjct: 355 LGGRLCYLLASTWEFDLQ---RDLPRHPCLELSHHSMQGLTQLLCRRLITMTKTCRY 408



 Score = 37.3 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 6/29 (20%), Positives = 12/29 (41%)

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           +  DPF G+G+            +G ++ 
Sbjct: 222 LCFDPFVGTGSILVACAHFGGVCVGTDID 250


>gi|296133000|ref|YP_003640247.1| protein of unknown function DUF548 [Thermincola sp. JR]
 gi|296031578|gb|ADG82346.1| protein of unknown function DUF548 [Thermincola potens JR]
          Length = 270

 Score = 40.7 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADP 47
           NE  N     + ++I  + ++ L+ LP  S D+++ DP
Sbjct: 152 NEKINEAMR-RIEVINADYLNYLKTLPDNSFDIVYFDP 188


>gi|241759137|ref|ZP_04757245.1| ribosomal protein L11 methyltransferase [Neisseria flavescens
           SK114]
 gi|319639456|ref|ZP_07994206.1| ribosomal protein L11 methyltransferase [Neisseria mucosa C102]
 gi|241320556|gb|EER56833.1| ribosomal protein L11 methyltransferase [Neisseria flavescens
           SK114]
 gi|317399351|gb|EFV80022.1| ribosomal protein L11 methyltransferase [Neisseria mucosa C102]
          Length = 295

 Score = 40.7 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  + L +  K G+ +LD   GSG     A KL   S IG+++ +  I
Sbjct: 143 GTGSHPTTR---LCLKWLDTQLKGGESVLDYGCGSGILAIAALKLGAGSAIGVDIDEQAI 199

Query: 259 DIATK 263
             +  
Sbjct: 200 RASKD 204


>gi|261381312|ref|ZP_05985885.1| ribosomal protein L11 methyltransferase [Neisseria subflava NJ9703]
 gi|284795802|gb|EFC51149.1| ribosomal protein L11 methyltransferase [Neisseria subflava NJ9703]
          Length = 295

 Score = 40.7 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  + L +  K G+ +LD   GSG     A KL   S IG+++ +  I
Sbjct: 143 GTGSHPTTR---LCLKWLDTQLKGGESVLDYGCGSGILAIAALKLGAGSAIGVDIDEQAI 199

Query: 259 DIATK 263
             +  
Sbjct: 200 RASKD 204


>gi|225077502|ref|ZP_03720701.1| hypothetical protein NEIFLAOT_02565 [Neisseria flavescens
           NRL30031/H210]
 gi|224951164|gb|EEG32373.1| hypothetical protein NEIFLAOT_02565 [Neisseria flavescens
           NRL30031/H210]
          Length = 295

 Score = 40.7 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  + L +  K G+ +LD   GSG     A KL   S IG+++ +  I
Sbjct: 143 GTGSHPTTR---LCLKWLDTQLKGGESVLDYGCGSGILAIAALKLGAGSAIGVDIDEQAI 199

Query: 259 DIATK 263
             +  
Sbjct: 200 RASKD 204


>gi|242279878|ref|YP_002992007.1| methyltransferase [Desulfovibrio salexigens DSM 2638]
 gi|242122772|gb|ACS80468.1| methyltransferase [Desulfovibrio salexigens DSM 2638]
          Length = 186

 Score = 40.7 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 18/32 (56%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
           K+ K +   VL K P K  DLIF DPPY   L
Sbjct: 98  KVFKTDLFKVLGKAPDKPYDLIFIDPPYGYDL 129


>gi|296446700|ref|ZP_06888640.1| protein of unknown function DUF1156 [Methylosinus trichosporium
           OB3b]
 gi|296255821|gb|EFH02908.1| protein of unknown function DUF1156 [Methylosinus trichosporium
           OB3b]
          Length = 983

 Score = 40.7 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 45/181 (24%), Gaps = 35/181 (19%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPY--NLQL-----------------------NGQLYRP 60
           G+S+     +   SVD +  DPPY  N+                           +L   
Sbjct: 530 GDSLD---HIADSSVDAVVMDPPYYDNVMYAELSDFFYVWLKRTAGLVVPELFTRRLTDK 586

Query: 61  DHSLV----DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT---LWVIGSYHNIFR 113
           D   V            K  +   Y    +     CRRVLKP+G    ++   +      
Sbjct: 587 DGEAVANPAKFSGQKGAKALAGRDYRDRMQRIFEECRRVLKPDGIMTLMFTHKASGAWDA 646

Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
           +   L    F I                  +        +   P   A+     Y     
Sbjct: 647 LTKGLIEAGFTITASWPINTEAEGSLHIKDKAAANSTIFLVCRPRVSAQSVEPAYWEDVE 706

Query: 174 A 174
            
Sbjct: 707 P 707


>gi|119899830|ref|YP_935043.1| methyltransferase [Azoarcus sp. BH72]
 gi|119672243|emb|CAL96157.1| hypothetical methyltransferase [Azoarcus sp. BH72]
          Length = 294

 Score = 40.7 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 3/85 (3%)

Query: 250 GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER-GLIQPGQILTNA 308
           GI++    I+ A +R A+   L N+       +R      F+ +V+  GLI+P  +    
Sbjct: 142 GIDVSPSSIEQA-RRFATRLGLANLRYAATDARRYVADPPFDTIVDTQGLIEP-DVDPAL 199

Query: 309 QGNISATVCADGTLISGTELGSIHR 333
              +   +  DG L+    +GS+ R
Sbjct: 200 LRQLFGWLRPDGQLLCVPAIGSLAR 224


>gi|229587389|ref|YP_002860427.1| putative DNA modification methylase [Clostridium botulinum Ba4 str.
           657]
 gi|229260217|gb|ACQ51254.1| putative DNA modification methylase [Clostridium botulinum Ba4 str.
           657]
          Length = 355

 Score = 40.7 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY--IDIATKRIAS 267
           L+  IL+          DP  GSGTS  VAK L    +G+++   +   +I       
Sbjct: 84  LIKDILLHYNIKEF--CDPMLGSGTSLDVAKDLNIKCLGMDLNPKFGGFNIIKDEFPK 139


>gi|154150753|ref|YP_001404371.1| putative RNA methylase [Candidatus Methanoregula boonei 6A8]
 gi|153999305|gb|ABS55728.1| putative RNA methylase [Methanoregula boonei 6A8]
          Length = 322

 Score = 40.7 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGDI 226
           Y A+ + +     R  + I   +   R   K  E  HP      +   ++ +S    G I
Sbjct: 124 YRAILSQDRCYFGRVLYRIDRGAYDARNPGKR-EFFHPGVMMPRMARTLVNLSLCGSGAI 182

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +LDPF G+G     A+ L  + IG +   
Sbjct: 183 LLDPFCGTGGILIEAEILSMNAIGSDFDP 211


>gi|91791810|ref|YP_561461.1| ribosomal protein L11 methyltransferase [Shewanella denitrificans
           OS217]
 gi|123166517|sp|Q12S38|PRMA_SHEDO RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|91713812|gb|ABE53738.1| LSU ribosomal protein L11P methyltransferase [Shewanella
           denitrificans OS217]
          Length = 293

 Score = 40.7 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 51/154 (33%), Gaps = 13/154 (8%)

Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
           +   L +    +   +    ++PM    G  F +  E +         + +  ++  ++ 
Sbjct: 55  VVVALFDAGTDLAPTVALLATSPM---LGENFPHKIEQI---EDKDWVREWMDSFHPIQF 108

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
                   S   IP       + +     G   HPT    AL    L S     + ++D 
Sbjct: 109 GTRLWICPSWREIPHPDAVNVILDPGLAFGTGTHPTT---ALCLEWLDSLDLSDEEVIDF 165

Query: 231 FFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
             GSG     A KL  +   G+++    ID +  
Sbjct: 166 GCGSGILAIAALKLGAKKVTGVDIDYQAIDASQA 199


>gi|228934692|ref|ZP_04097525.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228824944|gb|EEM70743.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
          Length = 390

 Score = 40.7 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 78/214 (36%), Gaps = 12/214 (5%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
            + S    +K    +  A      +   +  WL    + S      + + L   Q    +
Sbjct: 96  YFKSKWNFSKQKNKDDIAHHYDIGNDFYKL-WLDETMTYSCAYFQNEQDSLTTAQ-HNKV 153

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
              +   + + GD +LD   G G    A AK+     +G+ + ++     ++RI   + L
Sbjct: 154 NHILKKLNLQKGDTLLDIGCGWGELITAAAKQYGVKAMGVTLSEEQYAKTSERIKQ-EGL 212

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLI-QPGQILTNAQGNISATVCADGTLISGTELGS 330
            ++    L   R      F+ +V  G+I   G+           T+  DG +        
Sbjct: 213 TDLVEVSLLDYRDIKNRKFDKIVSVGMIEHVGKDNITQYFETVNTLLNDGGISL------ 266

Query: 331 IHRVGAKVSGSETCNGWNFWYFEKLGELHSINTL 364
           +H + +  +G  T NGW   Y    G + ++N L
Sbjct: 267 LHCITSPANGGAT-NGWIEKYIFPGGYVPAVNEL 299


>gi|225572198|ref|ZP_03781062.1| hypothetical protein RUMHYD_00492 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040370|gb|EEG50616.1| hypothetical protein RUMHYD_00492 [Blautia hydrogenotrophica DSM
           10507]
          Length = 183

 Score = 40.7 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 22  KIIKGNSISVLEKLPAKS-VDLIFADPPYNLQLNGQLY 58
           ++IK +    L +L  +   D IF DPPY   L  Q++
Sbjct: 94  RVIKTDVFQGLRQLEGEKPFDCIFMDPPYGKGLERQVF 131


>gi|28210455|ref|NP_781399.1| precorrin-6B methylase/decarboxylase cbiT/cbiE [Clostridium tetani
           E88]
 gi|28202892|gb|AAO35336.1| precorrin-6B methylase/decarboxylase cbiT/cbiE [Clostridium tetani
           E88]
          Length = 404

 Score = 40.7 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 51/146 (34%), Gaps = 10/146 (6%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK- 243
            I          N+      P  K E  +   +    K  D +LD   G+G+    A K 
Sbjct: 210 FIAKEDIHFIKDNEFIRGDCPMTKEEVRMLTAIKMDIKEEDKVLDIGAGTGSVSIQACKL 269

Query: 244 --LRRSFIGIEMKQDYIDIATKRIA--SVQPLGNIELTVLTGKRTEPRVAFNLLVERGLI 299
             L    I IE +++ + +  +     +   L  +E   L+ K T  + +FN +   G  
Sbjct: 270 CPLG-KVIAIEKEEEALRVIRENKKKFNANNLEIVEGEALSIKDT-IQESFNSIFIGG-- 325

Query: 300 QPGQILTNAQGNISATVCADGTLISG 325
             G  L       S  +  +G ++  
Sbjct: 326 -SGGNLEELIKEYSKKLKDNGKIVLN 350


>gi|329942454|ref|ZP_08291264.1| hypothetical protein G5Q_0146 [Chlamydophila psittaci Cal10]
 gi|332287094|ref|YP_004421995.1| RNA methyltransferase [Chlamydophila psittaci 6BC]
 gi|313847690|emb|CBY16678.1| conserved hypothetical protein [Chlamydophila psittaci RD1]
 gi|325507367|gb|ADZ19005.1| RNA methyltransferase [Chlamydophila psittaci 6BC]
 gi|328815364|gb|EGF85352.1| hypothetical protein G5Q_0146 [Chlamydophila psittaci Cal10]
 gi|328914329|gb|AEB55162.1| Methylase [Chlamydophila psittaci 6BC]
          Length = 187

 Score = 40.7 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)

Query: 22  KIIKGNSISVLEKLPAK--SVDLIFADPPYNL 51
            IIK  + S +++L  K  S DLI+ DPPYNL
Sbjct: 94  TIIKQEARSAIQRLAKKHMSFDLIYIDPPYNL 125


>gi|62184779|ref|YP_219564.1| hypothetical protein CAB134 [Chlamydophila abortus S26/3]
 gi|62147846|emb|CAH63592.1| conserved hypothetical protein [Chlamydophila abortus S26/3]
          Length = 187

 Score = 40.7 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)

Query: 22  KIIKGNSISVLEKLPAK--SVDLIFADPPYNL 51
            IIK  + S +++L  K  S DLI+ DPPYNL
Sbjct: 94  TIIKQEARSAIQRLAKKNMSFDLIYIDPPYNL 125


>gi|88800046|ref|ZP_01115616.1| hypothetical protein MED297_16594 [Reinekea sp. MED297]
 gi|88777172|gb|EAR08377.1| hypothetical protein MED297_16594 [Reinekea sp. MED297]
          Length = 713

 Score = 40.7 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 21/102 (20%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            + I  + +  L +    + DLI  DPP         +     + D +    D       
Sbjct: 603 HRFIHSDCLQWLSESKD-TFDLIIMDPP--------TFSNSARMKDTLDVQRD------- 646

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
              F    +    ++L P+G L    +Y   F +   L    
Sbjct: 647 -HEFL---VDHAMKLLSPDGVLIFSNNYRK-FYLDDRLYEAY 683


>gi|300705257|ref|YP_003746860.1| hypothetical protein RCFBP_21099 [Ralstonia solanacearum CFBP2957]
 gi|299072921|emb|CBJ44277.1| conserved protein of unknown function, methylase putative
           [Ralstonia solanacearum CFBP2957]
          Length = 221

 Score = 40.4 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY 49
           I+ G++ + L +    + DL+F DPP+
Sbjct: 123 IVSGDAFAWLARQADGAFDLVFIDPPF 149


>gi|207742234|ref|YP_002258626.1| hypothetical protein RSIPO_00415 [Ralstonia solanacearum IPO1609]
 gi|206593622|emb|CAQ60549.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609]
          Length = 223

 Score = 40.4 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY 49
           I+ G++ + L +    + DL+F DPP+
Sbjct: 125 IVSGDAFAWLARQADGAFDLVFIDPPF 151


>gi|207727830|ref|YP_002256224.1| hypothetical protein 1177 [Ralstonia solanacearum MolK2]
 gi|206591071|emb|CAQ56683.1| conserved hypothetical protein 1177 [Ralstonia solanacearum MolK2]
          Length = 192

 Score = 40.4 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY 49
           I+ G++ + L +    + DL+F DPP+
Sbjct: 94  IVSGDAFAWLARQADGAFDLVFIDPPF 120


>gi|83746834|ref|ZP_00943881.1| Methyltransferase [Ralstonia solanacearum UW551]
 gi|83726419|gb|EAP73550.1| Methyltransferase [Ralstonia solanacearum UW551]
          Length = 218

 Score = 40.4 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY 49
           I+ G++ + L +    + DL+F DPP+
Sbjct: 120 IVSGDAFAWLARQADGAFDLVFIDPPF 146


>gi|224476686|ref|YP_002634292.1| ribosomal protein L11 methyltransferase [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|254783313|sp|B9DNJ8|PRMA_STACT RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|222421293|emb|CAL28107.1| putative ribosomal protein L11 methyltransferase (PrmA) family
           protein [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 312

 Score = 40.4 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 40/132 (30%), Gaps = 18/132 (13%)

Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL--------------HPTQKPEALLS 214
              +  N     ++     I    E  + +   +L              HPT    ++  
Sbjct: 108 WENEWKNYFHPFKASKNFTIVPSWETYQKESDSELCIELDPGMAFGTGDHPTT---SMCL 164

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGN 273
             +    KP D ++D   GSG        L  R    +++ +  + +A +          
Sbjct: 165 NAIEQYVKPSDSVIDVGTGSGILSIACHLLGVRHIKAVDLDELAVRVAKENFEKNSCENA 224

Query: 274 IELTVLTGKRTE 285
           IE T     + E
Sbjct: 225 IETTTGNLLKGE 236


>gi|303257607|ref|ZP_07343619.1| putative methyltransferase [Burkholderiales bacterium 1_1_47]
 gi|302859577|gb|EFL82656.1| putative methyltransferase [Burkholderiales bacterium 1_1_47]
          Length = 159

 Score = 40.4 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 19/86 (22%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF-- 78
           D+I+  ++  +  + P  S  L+  DPP             H +    T    K   +  
Sbjct: 46  DQIM--DARDL--EFPDNSFHLVILDPP-------------HLINCGKTSDMAKSYGYLE 88

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWV 104
           +A+    +       RVL+PNGTL  
Sbjct: 89  KAWHEDMKRIFNEAWRVLRPNGTLIF 114


>gi|281492820|ref|YP_003354800.1| methyltransferase [Lactococcus lactis subsp. lactis KF147]
 gi|281376472|gb|ADA65958.1| Methyltransferase [Lactococcus lactis subsp. lactis KF147]
 gi|326407740|gb|ADZ64811.1| methyltransferase [Lactococcus lactis subsp. lactis CV56]
          Length = 188

 Score = 40.4 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 15/102 (14%)

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
             G  +LD F GSG+    A        I +E  +    +  + I   +     +L  ++
Sbjct: 49  FEGGRVLDLFAGSGSLAIEAISRGMDHAILVEKDRAAQQVILENIKMTKEPEKFQLLKMS 108

Query: 281 GKRT-------------EPRVAFNLLVER-GLIQPGQILTNA 308
            +R              +P  A   +VE   L+Q  + LT  
Sbjct: 109 AERVLSNLSETFDLVLLDPPYAKEQIVENLELLQEKKRLTEN 150


>gi|302536944|ref|ZP_07289286.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptomyces sp. C]
 gi|302445839|gb|EFL17655.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptomyces sp. C]
          Length = 281

 Score = 40.4 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 43/110 (39%), Gaps = 19/110 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY-------NLQLNGQLYRPDHSLVDAVTDSWDK 74
            + +G++++ L +L    VDL+ ++PPY        +    + + P+ +L     D  D 
Sbjct: 161 TVHQGDALTALPEL-DGQVDLVISNPPYIPLTEWEYVAPEARDHDPEMALFSG-EDGLDT 218

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
               E              R+L+P G + +  +     ++  +  +   W
Sbjct: 219 IRGIE----------RTAHRLLRPGGIVVIEHADTQGGQVPWIFADERGW 258


>gi|229110833|ref|ZP_04240396.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus
           Rock1-15]
 gi|228672712|gb|EEL27993.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus
           Rock1-15]
          Length = 390

 Score = 40.4 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 77/214 (35%), Gaps = 12/214 (5%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
            + S    +K    +  A      +   +  WL    + S      + + L   Q    +
Sbjct: 96  YFKSKWNFSKQKNKDDIAHHYDIGNDFYKL-WLDETMTYSCAYFQNEQDSLTTAQ-HNKV 153

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
              +   + + GD +LD   G G    A AK+     +G+ + ++     ++RI   + L
Sbjct: 154 NHILKKLNLQKGDTLLDIGCGWGELITAAAKQYGVKAMGVTLSEEQFAKTSERIKQ-EGL 212

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLI-QPGQILTNAQGNISATVCADGTLISGTELGS 330
            ++    L   R      F+ +V  G+I   G+            +  DG +        
Sbjct: 213 TDLVEVSLLDYRDIKNRKFDKIVSVGMIEHVGKDNIKQYFETVNKLLNDGGISL------ 266

Query: 331 IHRVGAKVSGSETCNGWNFWYFEKLGELHSINTL 364
           +H + +  +G  T NGW   Y    G + ++N L
Sbjct: 267 LHCITSPANGGAT-NGWIEKYIFPGGYVPAVNEL 299


>gi|15674145|ref|NP_268320.1| hypothetical protein L22498 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12725224|gb|AAK06261.1|AE006445_4 conserved hypothetical protein [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 188

 Score = 40.4 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 15/102 (14%)

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
             G  +LD F GSG+    A        I +E  +    +  + I   +     +L  ++
Sbjct: 49  FEGGRVLDLFAGSGSLAIEAISRGMDHAILVEKDRAAQQVILENIKMTKEPEKFQLLKMS 108

Query: 281 GKRT-------------EPRVAFNLLVER-GLIQPGQILTNA 308
            +R              +P  A   +VE   L+Q  + LT  
Sbjct: 109 AERVLSNLSETFDLVLLDPPYAKEQIVENLELLQEKKRLTEN 150


>gi|326938939|gb|AEA14835.1| O-antigen biosynthesis protein rfbC [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 229

 Score = 40.4 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 59/157 (37%), Gaps = 18/157 (11%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L  +  E  +    P  LL  I     +    +LD    SG  GA  K+      GIE  
Sbjct: 8   LYEEKSEHYYNAANP-NLLKHIKKEWKE----VLDIGCSSGALGAAIKENGTRVSGIEAF 62

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNAQGNIS 313
            +  + A +R+  +  LG+IE   L  +  +   V F  ++E  L  P  ++      + 
Sbjct: 63  PEAAEKAKERLDHII-LGDIEKIDLPYEEGQFDCVIFGDVLEH-LFNPWAVI----EKVK 116

Query: 314 ATVCADGTLISGTELGSIHRVGAKVSGSETCNG-WNF 349
             +  +G +++     SI  V      +    G W +
Sbjct: 117 PYIKQNGVILA-----SIPNVAHISVLAPLLAGNWTY 148


>gi|257066909|ref|YP_003153165.1| putative RNA methylase [Anaerococcus prevotii DSM 20548]
 gi|256798789|gb|ACV29444.1| putative RNA methylase [Anaerococcus prevotii DSM 20548]
          Length = 375

 Score = 40.4 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 66/173 (38%), Gaps = 11/173 (6%)

Query: 96  LKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR--------FQN 147
           L+    ++++           + +N+      D + ++SN + N R  +         Q+
Sbjct: 51  LRCADRVYLVLDEFKATSFDELFENIKRINWTDYLRKESNFIVNARTYKSKLFALRSIQS 110

Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP-T 206
             E  I  S   K K  TF     +   E +  R+   + I +  + L  +   +     
Sbjct: 111 ITEKAIIDSLRKKFKISTFPKSGERVGIEVMVNRNIATVTIDTSGDGLHKRGYREDSVKA 170

Query: 207 QKPEALLSRILVSSTKPGD-IILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDY 257
              E L + ++  S    D  +LDPF GSGT    A +  R+   GI+   D+
Sbjct: 171 PLRENLAAALVDLSFYNPDRFLLDPFCGSGTILIEAARKARNIAPGIDRDFDF 223


>gi|119872293|ref|YP_930300.1| hypothetical protein Pisl_0781 [Pyrobaculum islandicum DSM 4184]
 gi|119673701|gb|ABL87957.1| conserved hypothetical protein [Pyrobaculum islandicum DSM 4184]
          Length = 121

 Score = 40.4 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 42/96 (43%), Gaps = 6/96 (6%)

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSG 235
           +      W +P+ +            +     PE ++ R+L ++  +PG+++ D   GSG
Sbjct: 2   NETPPWLWDLPLINLYNTDVVGFMYDVPFVATPEVVVRRMLQLAKVQPGEVVYD--LGSG 59

Query: 236 ---TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
                   AK+     +G+E+++D  + +  RI  +
Sbjct: 60  DGRVVIIAAKEFGARAVGVEIRKDLYEQSMTRIKDL 95


>gi|219669847|ref|YP_002460282.1| methyltransferase [Desulfitobacterium hafniense DCB-2]
 gi|219540107|gb|ACL21846.1| methyltransferase [Desulfitobacterium hafniense DCB-2]
          Length = 180

 Score = 40.4 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY 49
           ++I  ++ + LE+   +  DLIF DPPY
Sbjct: 93  RLIGMDAFAYLEQHREERFDLIFIDPPY 120


>gi|77918673|ref|YP_356488.1| SAM-dependent methyltransferase [Pelobacter carbinolicus DSM 2380]
 gi|77544756|gb|ABA88318.1| SAM-dependent methyltransferase [Pelobacter carbinolicus DSM 2380]
          Length = 398

 Score = 40.4 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKL--PAKSVDLIFADPP 48
           N   N +   + + + G+  +VL+ L    +S D+I  DPP
Sbjct: 264 NFEANRLNPKRHEFLVGDCRNVLKDLQRQGRSFDVIIMDPP 304


>gi|42525745|ref|NP_970843.1| adenine-specific DNA modification methyltransferase [Treponema
           denticola ATCC 35405]
 gi|41815756|gb|AAS10724.1| adenine-specific DNA modification methyltransferase [Treponema
           denticola ATCC 35405]
          Length = 877

 Score = 40.4 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 77/229 (33%), Gaps = 13/229 (5%)

Query: 50  NLQLNGQLYRPDHSLVDAVTDSWDKFSSF--EAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
           N  L G     D ++ +  ++S+D       E Y        L+ R  LKPNG + +   
Sbjct: 379 NKNLKGISKLLDKTINNLKSNSYDNRIPVMAEHYFYDMYKTFLSIREYLKPNGKIAIDIG 438

Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN---AHETLIWASPSPKAKGY 164
                 +      +   IL  + ++  + +     R           LI+ + S +    
Sbjct: 439 DSIFGGVHIPTDLILIEILLTLEYKLIDSVKLRERRSRSGETIKQILLIFTNNSKQDIKK 498

Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT-----QKPEALLSRILVS 219
             +    K   +    +++        S++     G KLH       +   ++   ++ +
Sbjct: 499 KEDVYVPKWEEKWSFFKNNIPYQKIPYSKKNW---GNKLHSLCSYQGKLKPSIAHFLVNT 555

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
                  ILDPF G GT    A+   +     ++      I+  ++  +
Sbjct: 556 FVPENGSILDPFSGVGTIPFEARLNNKYSFSFDISLPAYYISAAKLGKI 604


>gi|288870960|ref|ZP_06115918.2| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
 gi|288865256|gb|EFC97554.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
          Length = 505

 Score = 40.4 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 84/240 (35%), Gaps = 28/240 (11%)

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
           ++   ++  +  +   +   RR  +  E L           Y F    +    E+ +   
Sbjct: 258 YYFRVELKCKMDHSKKSAFTRRLSSKIEKLSGRKLINTTSNYEFEIRLI----ENKEGSC 313

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           + LI + +  +   +   E +  + K    AL  ++     K G  +LDPF G GT    
Sbjct: 314 NVLIKLFTLKDERFSYRKEVIPTSIKAVNAALTVKLAQPYMKEGAQVLDPFCGVGTMLIE 373

Query: 241 ---AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERG 297
              A K    + G+++ ++ I+ A +  A+   + +         + E    F+ ++   
Sbjct: 374 RHKAVKAGTMY-GLDILEEAIEKARENTAAAGQIIHYINRDFFDFKHE--YLFDEIITNM 430

Query: 298 LIQPG-------QILTNAQGNISATVCADGTLI--SGTELGSIHRVGAKVSGSETCNGWN 348
             + G       + L  A  + +  V  D  ++       G + ++          NG+ 
Sbjct: 431 PFKIGRKTEEEIENLYEAFFSSTKKVLKDDGIMILYSHNAGHVKKMA-------PANGFT 483


>gi|171464205|ref|YP_001798318.1| methyltransferase [Polynucleobacter necessarius subsp. necessarius
           STIR1]
 gi|171193743|gb|ACB44704.1| methyltransferase [Polynucleobacter necessarius subsp. necessarius
           STIR1]
          Length = 198

 Score = 40.4 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 6/78 (7%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           +I++ +S+  L++    S +LIF DPP+      +        V       D  S    Y
Sbjct: 105 EILQRDSLEFLKQQANGSTNLIFIDPPF------RDSSLLDQAVIGAGRICDDASGGGIY 158

Query: 82  DAFTRAWLLACRRVLKPN 99
             F  + L      L P 
Sbjct: 159 VEFPSSRLREEIEALLPG 176


>gi|332995326|gb|AEF05381.1| putative methyltransferase [Alteromonas sp. SN2]
          Length = 218

 Score = 40.4 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 19/27 (70%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY 49
           + +G+++++L     KS D++F DPP+
Sbjct: 132 VHQGDALAILPTFSGKSFDIMFVDPPF 158


>gi|82703344|ref|YP_412910.1| hypothetical protein Nmul_A2226 [Nitrosospira multiformis ATCC
           25196]
 gi|82411409|gb|ABB75518.1| hypothetical protein Nmul_A2226 [Nitrosospira multiformis ATCC
           25196]
          Length = 467

 Score = 40.4 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 9/22 (40%)

Query: 34  KLPAKSVDLIFADPPYNLQLNG 55
           KL    VDL+   PPY      
Sbjct: 286 KLQDNCVDLVITSPPYGSAQKY 307


>gi|323455017|gb|EGB10886.1| hypothetical protein AURANDRAFT_2684 [Aureococcus anophagefferens]
          Length = 401

 Score = 40.4 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 15/36 (41%)

Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           +    G ++LDPF G+G+             G ++ 
Sbjct: 212 ARCDVGSLVLDPFAGTGSILVACALFGGFCYGSDID 247


>gi|302754390|ref|XP_002960619.1| hypothetical protein SELMODRAFT_229976 [Selaginella moellendorffii]
 gi|300171558|gb|EFJ38158.1| hypothetical protein SELMODRAFT_229976 [Selaginella moellendorffii]
          Length = 293

 Score = 40.4 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 29/71 (40%)

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           R        +H   K       +L        ++LD   GSG SG    +    +IG+++
Sbjct: 20  RKYTTSSRIIHIQAKLTERAMELLALPDDKPKLLLDIGCGSGLSGETLSEKGHHWIGMDI 79

Query: 254 KQDYIDIATKR 264
            Q  +++A +R
Sbjct: 80  SQSMLEVALER 90


>gi|228938432|ref|ZP_04101041.1| O-antigen biosynthesis protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228971311|ref|ZP_04131938.1| O-antigen biosynthesis protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228977921|ref|ZP_04138302.1| O-antigen biosynthesis protein [Bacillus thuringiensis Bt407]
 gi|228781838|gb|EEM30035.1| O-antigen biosynthesis protein [Bacillus thuringiensis Bt407]
 gi|228788347|gb|EEM36299.1| O-antigen biosynthesis protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228821169|gb|EEM67185.1| O-antigen biosynthesis protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 232

 Score = 40.4 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 59/157 (37%), Gaps = 18/157 (11%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L  +  E  +    P  LL  I     +    +LD    SG  GA  K+      GIE  
Sbjct: 11  LYEEKSEHYYNAANP-NLLKHIKKEWKE----VLDIGCSSGALGAAIKENGTRVSGIEAF 65

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNAQGNIS 313
            +  + A +R+  +  LG+IE   L  +  +   V F  ++E  L  P  ++      + 
Sbjct: 66  PEAAEKAKERLDHII-LGDIEKIDLPYEEGQFDCVIFGDVLEH-LFNPWAVI----EKVK 119

Query: 314 ATVCADGTLISGTELGSIHRVGAKVSGSETCNG-WNF 349
             +  +G +++     SI  V      +    G W +
Sbjct: 120 PYIKQNGVILA-----SIPNVAHISVLAPLLAGNWTY 151


>gi|220907516|ref|YP_002482827.1| hypothetical protein Cyan7425_2103 [Cyanothece sp. PCC 7425]
 gi|219864127|gb|ACL44466.1| protein of unknown function DUF1156 [Cyanothece sp. PCC 7425]
          Length = 961

 Score = 40.4 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 5/83 (6%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           P  KP+A+   I   +      + DPF G G+    A++L       ++    + +  K 
Sbjct: 136 PPTKPDAVREYIAKYAPP----VYDPFAGGGSIPLEAQRLGLEAHASDLNPVAV-LINKA 190

Query: 265 IASVQPLGNIELTVLTGKRTEPR 287
           +  + P    +  +    R + R
Sbjct: 191 LIEIPPKFKDQPPINPEDRKQIR 213


>gi|162453898|ref|YP_001616265.1| putative methyltransferase [Sorangium cellulosum 'So ce 56']
 gi|161164480|emb|CAN95785.1| putative methyltransferase [Sorangium cellulosum 'So ce 56']
          Length = 389

 Score = 40.4 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 17/94 (18%)

Query: 217 LVSSTKPGDIILDPFFGSGTSG---AVAKKLRR--SFIGIEMKQDYIDIATKRIASVQPL 271
           +    + GD+++D   GSG        AK++ R    IGI+M  + +++A + I  V   
Sbjct: 55  MEMGLRRGDVVVD--LGSGAGLDAFIAAKQVGRSGRVIGIDMTPEMLEVARRNIDPVTRA 112

Query: 272 GNIELTVLTGKRTEPRVAF-NLLVERGLIQPGQI 304
              +         EP V F   ++ER  +    +
Sbjct: 113 LGYD---------EPNVRFEQSVIERLPLADSSV 137


>gi|157103468|ref|XP_001647995.1| hypothetical protein AaeL_AAEL003922 [Aedes aegypti]
 gi|108880526|gb|EAT44751.1| conserved hypothetical protein [Aedes aegypti]
          Length = 493

 Score = 40.4 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           K GD++ DPF GSG+    A K     +G ++ 
Sbjct: 215 KKGDVVYDPFVGSGSLLVAAAKFGAYVLGTDID 247


>gi|253682337|ref|ZP_04863134.1| ribosomal protein L11 methyltransferase [Clostridium botulinum D
           str. 1873]
 gi|253562049|gb|EES91501.1| ribosomal protein L11 methyltransferase [Clostridium botulinum D
           str. 1873]
          Length = 312

 Score = 40.4 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 4/108 (3%)

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSR 215
              A  +   Y   K  NE + ++  W   I    E +   D      T   E   L  +
Sbjct: 111 QDWANNWKKYYKPTKIGNE-IVVKPTWEEYIKKDDEIVIELDPGMAFGTGTHETTRLCVK 169

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIAT 262
            L        ++ D   GSG     A KL  +  +G+++    +D A 
Sbjct: 170 ALEEYVNEDSVVFDIGTGSGILSIAAAKLNAKHVVGVDLDPVAVDAAK 217


>gi|325280573|ref|YP_004253115.1| hypothetical protein Odosp_1927 [Odoribacter splanchnicus DSM
           20712]
 gi|324312382|gb|ADY32935.1| Conserved hypothetical protein CHP00095 [Odoribacter splanchnicus
           DSM 20712]
          Length = 177

 Score = 40.4 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 18/32 (56%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
           KI K +     +KL  +  DLIFADPPY L  
Sbjct: 95  KIYKTDVFIACKKLKGRKFDLIFADPPYKLDK 126


>gi|269468493|gb|EEZ80151.1| type I site-specific deoxyribonuclease [uncultured SUP05 cluster
           bacterium]
          Length = 437

 Score = 40.4 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 51/138 (36%), Gaps = 15/138 (10%)

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA-VAKKLR--RSFIGIEM 253
            K   + +  Q+   +L++I+ +       + DP  GSG+    VAK++    +F G E+
Sbjct: 198 GKKAGEFYTPQQVSKVLAKIVTTGKSKLKSVYDPTCGSGSLLLRVAKEVDDVSNFYGQEL 257

Query: 254 KQDYIDIAT---------KRIASVQPLGNIELTVLTGKRTEPRV---AFNLLVERGLIQP 301
            +   ++A           R   ++    IE      +R E  V    F+       +  
Sbjct: 258 NRTTYNLARMNMILHDIHYRKFDIKQEDTIEHPQHIDERFEAVVANPPFSAHWSANPLHM 317

Query: 302 GQILTNAQGNISATVCAD 319
                +  G ++    AD
Sbjct: 318 SDDRFSQYGKLAPKTKAD 335


>gi|262275775|ref|ZP_06053584.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Grimontia hollisae
           CIP 101886]
 gi|262219583|gb|EEY70899.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Grimontia hollisae
           CIP 101886]
          Length = 710

 Score = 40.4 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 40/125 (32%), Gaps = 22/125 (17%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
           + + +  L     +  DLIF DPP         +     ++D      D           
Sbjct: 601 QADCLKWLSTAKGQY-DLIFIDPP--------TFSNSKRMLDTFDVQRDHIK-------- 643

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
               +   +R+L+ +G +    +  N       L+ L     N  +  +S PM   R + 
Sbjct: 644 ---LMTGLKRLLRQDGEIVFSNNKRNFKMDTEALEALGLKAQN--ITSRSIPMDFERNQH 698

Query: 145 FQNAH 149
             N  
Sbjct: 699 IHNCW 703


>gi|308233546|ref|ZP_07664283.1| RNA methyltransferase, TrmA family protein [Atopobium vaginae DSM
           15829]
 gi|328944339|ref|ZP_08241803.1| TrmA family RNA methyltransferase [Atopobium vaginae DSM 15829]
 gi|327491258|gb|EGF23033.1| TrmA family RNA methyltransferase [Atopobium vaginae DSM 15829]
          Length = 449

 Score = 40.4 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 9/121 (7%)

Query: 206 TQKPEALLSRILVSS-TKPGDIILDPFFGSGT-SGAVAKKLRRSFIGIEMKQDYIDIATK 263
           T   E L+ R++     +P +  LD + G+GT +  +A++  R  IG+E +   I    +
Sbjct: 287 THNAEKLIERVMDDLNVQPNETALDLYCGAGTFTLPLAQRA-RDVIGVEAQGSSIQD-LR 344

Query: 264 RIASVQPLGNIELTVLTGKRTEPRVAFNLLVE---RGLIQPG--QILTNAQGNISATVCA 318
           R   +  L N++       R  P+   +++V    R  ++ G    L+ +     A V  
Sbjct: 345 RHIKLFNLHNVQAIGGDALREYPKAHADVIVVDPPRAGLEAGVCDKLSQSGARAIAYVSC 404

Query: 319 D 319
           D
Sbjct: 405 D 405


>gi|254173486|ref|ZP_04880158.1| conserved hypothetical protein TIGR01177 [Thermococcus sp. AM4]
 gi|214032178|gb|EEB73008.1| conserved hypothetical protein TIGR01177 [Thermococcus sp. AM4]
          Length = 333

 Score = 40.4 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 5/69 (7%)

Query: 199 DGEKLH--PTQKPEALL---SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           +  K H  P  +P +L    SR LV+ TK    +LDP  G+G     A  L     G+++
Sbjct: 150 ERRKAHHRPFFRPISLHPRVSRALVNLTKARKELLDPMMGAGGILIEAGLLGLKVYGVDI 209

Query: 254 KQDYIDIAT 262
           K + ++ A 
Sbjct: 210 KPEMVEGAE 218


>gi|239628807|ref|ZP_04671838.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518953|gb|EEQ58819.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 499

 Score = 40.4 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 4/111 (3%)

Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSSTK 222
           T NY+      E+     + ++ + +  +   +   E +  + KP   AL + +     K
Sbjct: 289 TENYEFELRLIENKLGNCNIMVKLFTLKDTRFSYRREVIPTSIKPVNAALTAALAKEYMK 348

Query: 223 PGDIILDPFFGSGTSGAVAKKLRR--SFIGIEMKQDYIDIATKRIASVQPL 271
               +LDPF G GT      K  R  +  GI++++D I  A +   + + +
Sbjct: 349 EDAQVLDPFCGVGTMLIERHKAVRANTSYGIDIQEDAILKARENAEAARQV 399


>gi|332799408|ref|YP_004460907.1| methyltransferase [Tepidanaerobacter sp. Re1]
 gi|332697143|gb|AEE91600.1| methyltransferase [Tepidanaerobacter sp. Re1]
          Length = 179

 Score = 40.4 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 6/59 (10%)

Query: 3   QKNSLAINENQNSIFEWK----DKIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNG 55
           +KN +A +  + ++ + K     ++I+ + IS L+KL     + D+IF DPPY     G
Sbjct: 71  EKNPIACSIIKQNLLDLKLIGKGRVIQSDVISALKKLILEGNNFDIIFMDPPYFKNNIG 129


>gi|89895418|ref|YP_518905.1| hypothetical protein DSY2672 [Desulfitobacterium hafniense Y51]
 gi|89334866|dbj|BAE84461.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 180

 Score = 40.4 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR-----PDHSLVDAVTDSWDKFS 76
           ++I  ++ + LE+   +  DLIF DPPY+  L  +  +        +    +     K  
Sbjct: 93  RLIGMDAFAYLEQHREERFDLIFIDPPYHQGLVEKSLKLLADPCRLTYSGVIIAETAKDE 152

Query: 77  SFEAYDAF 84
           + E+YD F
Sbjct: 153 NLESYDPF 160


>gi|330686115|gb|EGG97736.1| ribosomal protein L11 methyltransferase [Staphylococcus epidermidis
           VCU121]
          Length = 312

 Score = 40.4 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 69/202 (34%), Gaps = 30/202 (14%)

Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL--------------HPTQKPEALLS 214
              +  N     R+     I    E    +   +L              HPT    ++  
Sbjct: 108 WENEWKNYFHPFRASETFTIVPSWETYTKESANELCIELDPGMAFGTGDHPTT---SMCL 164

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATKRIASVQPLGN 273
           + +    +P   ++D   GSG     +  +    I  +++ +  +++A +       L  
Sbjct: 165 KAIEHFVEPQHSVIDVGTGSGILSIASHLIGVKRIKALDIDEMAVNVAKENFEKNHCLNA 224

Query: 274 IELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGS--- 330
           IE       + E +  F++++   ++    I+     +   TV  DG  I+   +     
Sbjct: 225 IEAVPGNLLKDE-KEHFDIVI-ANIL--AHIIDEMIEDAYNTVNEDGYFITSGIIEEKYE 280

Query: 331 -----IHRVGAKVSGSETCNGW 347
                + RVG K+   +  NGW
Sbjct: 281 DIESHMKRVGFKIISVQHDNGW 302


>gi|320533403|ref|ZP_08034091.1| hypothetical protein HMPREF9057_01975 [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320134381|gb|EFW26641.1| hypothetical protein HMPREF9057_01975 [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 454

 Score = 40.4 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 3/58 (5%)

Query: 204 HPTQKPEAL---LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +P      L   L   L + +    ++ DPF GSGT    +      F G ++    I
Sbjct: 52  YPAMMVPELQGALLDDLRAVSPGSGLVYDPFAGSGTVMLESLYRGMDFHGSDINPLAI 109


>gi|238021858|ref|ZP_04602284.1| hypothetical protein GCWU000324_01762 [Kingella oralis ATCC 51147]
 gi|237866472|gb|EEP67514.1| hypothetical protein GCWU000324_01762 [Kingella oralis ATCC 51147]
          Length = 295

 Score = 40.4 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 60/158 (37%), Gaps = 19/158 (12%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT     L  + L ++ + G+ +LD   GSG     A KL   S  G+++    I
Sbjct: 143 GTGSHPTT---HLCLQWLDNNLRGGESVLDYGCGSGILTIAALKLGAGSATGVDIDPQAI 199

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
             +     +VQ        +  G    P+  F+++V   L  P ++L +     + T   
Sbjct: 200 KASND--NAVQNEVQAAFYLPDG---LPQGQFDVVVANILANPLRMLGDMLAGRTHTG-- 252

Query: 319 DGTLISGTELGS-IHRVGAKV----SGSETC--NGWNF 349
            G ++    L   I  + A        +     NGW +
Sbjct: 253 -GRIVLSGILEEQIDEMSAIYAQWFDLAPAIVNNGWAY 289


>gi|284162400|ref|YP_003401023.1| RNA methylase [Archaeoglobus profundus DSM 5631]
 gi|284012397|gb|ADB58350.1| putative RNA methylase [Archaeoglobus profundus DSM 5631]
          Length = 317

 Score = 40.4 bits (93), Expect = 0.48,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 53/183 (28%), Gaps = 24/183 (13%)

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
           ++W             +  +  +                  ER  NK    + P   P  
Sbjct: 102 VLWKRGCKINLTNPDTHIRVYISKRCHVGYLIHKTDKKQFLERHPNKRPFSM-PCVIPPK 160

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS--VQ 269
           +   ++  +      ILDP  G+GT    A  +   F+G+E        A  RI     +
Sbjct: 161 IGRAMVNITAGKY--ILDPMCGTGTFLIEAGLMGLDFVGVE--------AYDRIVRGCAE 210

Query: 270 PLGNIELTVLTGKRTEPRVAFNLLVERGLIQP----------GQILTNAQGNISATV-CA 318
            L   +L V   +     + F   V  G++            G+ L          V   
Sbjct: 211 NLKFFKLPVNVIRGDARNLPFKDEVFDGIVTDFPYKRSTRLFGENLVERAVEEIHRVLKP 270

Query: 319 DGT 321
           DG 
Sbjct: 271 DGR 273


>gi|261211618|ref|ZP_05925905.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio sp. RC341]
 gi|260838968|gb|EEX65600.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio sp. RC341]
          Length = 711

 Score = 40.4 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 20/103 (19%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + + I+ + +  L     +  DLIF DPP         +     +        D  +   
Sbjct: 598 QHQYIQADCLQWLANAQGQY-DLIFIDPP--------TFSNSKRMEQTFDVQRDHVT--- 645

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                    +   +R+L+P GT+    +  +       LQ+L 
Sbjct: 646 --------LMTNLKRLLRPEGTIVFSNNKRHFKMDLEALQSLG 680


>gi|163803810|ref|ZP_02197662.1| tRNA (guanine-N(7))-methyltransferase [Vibrio sp. AND4]
 gi|159172390|gb|EDP57264.1| tRNA (guanine-N(7))-methyltransferase [Vibrio sp. AND4]
          Length = 342

 Score = 40.4 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE-- 285
           +DP  G GT+         + +G+E+ Q ++      I      G  +  V   KRT   
Sbjct: 138 MDPMCGKGTTLFEGLIHGLNVVGVEINQKWVQELQTFIVKFMKNGRFKHKVSKEKRTSGG 197

Query: 286 PRVAFNLLVERGLIQPG--------QILTNAQGNISATV 316
            +VA   +VE    +            L +A   I+  V
Sbjct: 198 KKVADGFVVEAAAEKEDYNKGNLQTMKLYSADTRIADQV 236


>gi|121603803|ref|YP_981132.1| putative methyltransferase [Polaromonas naphthalenivorans CJ2]
 gi|120592772|gb|ABM36211.1| putative methyltransferase [Polaromonas naphthalenivorans CJ2]
          Length = 224

 Score = 40.4 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 21/31 (67%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ 52
           +I +G+ +S L++L A S+ L+  DPP++  
Sbjct: 129 RIERGDGLSALKRLEAGSMQLVLIDPPFDSG 159


>gi|330720803|gb|EGG99013.1| Ribosomal protein L11 methyltransferase [gamma proteobacterium
           IMCC2047]
          Length = 165

 Score = 40.4 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 9/132 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF-IGIEMKQDYI 258
           G   H T    AL  + L + +  G  ++D   GSG  G  A  L      GI++    +
Sbjct: 9   GTGTHATT---ALCLQWLDAHSPQGLSVIDYGCGSGVLGIAALLLGCDSMCGIDIDPQAL 65

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
            IAT + A    +   +  V    +     A   +V   ++     L +   +IS+ V  
Sbjct: 66  -IATHQNAEQNGISKNQYRVFLPAQAPHESA--DMVLANIL--AGPLMSLADDISSRVKP 120

Query: 319 DGTLISGTELGS 330
            G L+    L S
Sbjct: 121 GGKLVLSGILSS 132


>gi|301054907|ref|YP_003793118.1| putative cyclopropane-fatty-acyl-phospholipid synthase [Bacillus
           anthracis CI]
 gi|300377076|gb|ADK05980.1| predicted cyclopropane-fatty-acyl-phospholipid synthase [Bacillus
           cereus biovar anthracis str. CI]
          Length = 390

 Score = 40.4 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 78/214 (36%), Gaps = 12/214 (5%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
            + S    +K    +  A      +   +  WL    + S      + + L   Q    +
Sbjct: 96  YFKSKWNFSKQKNKDDIAHHYDIGNDFYKL-WLDETMTYSCAYFQNEQDSLTTAQ-HNKV 153

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
              +   + + GD +LD   G G    A AK+     +G+ + ++     ++RI   + L
Sbjct: 154 NHILKKLNLQKGDTLLDIGCGWGELITAAAKQYGVKAMGVTLSEEQYAKTSERIKQ-EGL 212

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLI-QPGQILTNAQGNISATVCADGTLISGTELGS 330
            ++    L   R    + F+ +V  G+I   G+            +  DG +        
Sbjct: 213 TDLVEVSLLDYRDIKNLKFDKIVSVGMIEHVGKDNITQYFETVNELLNDGGISL------ 266

Query: 331 IHRVGAKVSGSETCNGWNFWYFEKLGELHSINTL 364
           +H + +  +G  T NGW   Y    G + ++N L
Sbjct: 267 LHCITSPANGGAT-NGWIEKYIFPGGYVPAVNEL 299


>gi|311696728|gb|ADP99601.1| hypothetical spermidine synthase [marine bacterium HP15]
          Length = 247

 Score = 40.4 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 31/131 (23%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++   ++   LEKLP  S D+I AD  YN                      D+ S  +A 
Sbjct: 117 QVTIADARDALEKLPEASTDMILADL-YN---------------------ADRMSPAQA- 153

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI-GTMLQNLNFWILNDIVWR--KSNPMP 138
               + ++  C RVL  +G  W++ +YH    + G   + L       + +R   +N + 
Sbjct: 154 ---QKQFVDECARVLTEDG--WLVLNYHRTPDVQGAYFRRLKRHFAVLLGFRSKSNNTVV 208

Query: 139 NFRGRRFQNAH 149
               + FQ+ H
Sbjct: 209 YASKQHFQSVH 219


>gi|71893972|ref|YP_279418.1| DNA adenine methylase [Mycoplasma hyopneumoniae J]
 gi|71852099|gb|AAZ44707.1| DNA adenine methylase [Mycoplasma hyopneumoniae J]
          Length = 549

 Score = 40.4 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 13/95 (13%)

Query: 11  ENQNSIFEWKDK----IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           +N N+I  + ++    I   N + +L        D +F DPPY+          D+S  +
Sbjct: 148 KNLNNISSFLNENSIEIYNKNYLEILSLAKEN--DFVFIDPPYD-------SENDNSFTN 198

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
              + W K  + E  D   +      + +   + T
Sbjct: 199 YDRNGWKKQDTLELIDTLKKLNAKKVKWMFTNHST 233


>gi|324325330|gb|ADY20590.1| hypothetical protein YBT020_06720 [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 229

 Score = 40.4 bits (93), Expect = 0.50,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 57/165 (34%), Gaps = 24/165 (14%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           S    L  +     +    P  LL  I     +    +LD    SG  GA  K+      
Sbjct: 3   SPKNSLYEEKSGHYYNAVNP-NLLKHIKKEWKE----VLDIGCSSGALGAAIKENGTRVS 57

Query: 250 GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNA 308
           GIE   +  + A +R+  V  LG+IE   +  +  +   V F  ++E         L + 
Sbjct: 58  GIEAFPEAAEQAKERLDHVV-LGDIETMDMPYEEEQFDCVIFGDVLEH--------LFDP 108

Query: 309 ---QGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNG-WNF 349
                 +   +  +G +++     SI  V      +    G W +
Sbjct: 109 WAVIEKVKPYIKQNGVILA-----SIPNVSHISVLAPLLAGNWTY 148


>gi|326498625|dbj|BAK02298.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 403

 Score = 40.4 bits (93), Expect = 0.51,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 13/92 (14%)

Query: 184 WLIPICSGSERLRNKD---------GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
           W+IP        +  +         G   HPT K   L    L  + K G+ +LD   G+
Sbjct: 196 WIIPKWRTPPDPQATNIIIDPGLAFGTGEHPTTK---LCLLFLRDAIKGGEHVLDYGTGT 252

Query: 235 GTSGAVAKKLRRS-FIGIEMKQDYIDIATKRI 265
           G  G  A K+  +   GI++    +  A + +
Sbjct: 253 GVLGIAALKMGAALSTGIDIDPQAVSSARQNM 284


>gi|322417812|ref|YP_004197035.1| 50S ribosomal protein L11 methyltransferase [Geobacter sp. M18]
 gi|320124199|gb|ADW11759.1| ribosomal protein L11 methyltransferase [Geobacter sp. M18]
          Length = 306

 Score = 40.4 bits (93), Expect = 0.51,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 46/134 (34%), Gaps = 11/134 (8%)

Query: 200 GEKLHPTQKPE-ALLSRILV--SSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQ 255
           G   HPT K     L RI       K  D +LD   GSG     A  L  + I  +++  
Sbjct: 145 GTGAHPTTKMCLESLERIAFDACGCKLPDPVLDVGTGSGVLSIAAALLGATEITAVDIDP 204

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL-LVERGLIQPGQILTNAQGNISA 314
           + + +  + +     L  +   V        R+     +V   ++   + L      + +
Sbjct: 205 EAVRVTQENLE----LNGVADRVTASTTDLSRLPEGFAVVVANIL--AEELVRLSDQLIS 258

Query: 315 TVCADGTLISGTEL 328
            V   G LI    L
Sbjct: 259 RVAPGGWLILSGIL 272


>gi|169834741|ref|YP_001715817.1| DNA modification methylase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408848|gb|ACA57258.1| DNA modification methylase [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 355

 Score = 40.4 bits (93), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY--IDIATKRIAS 267
           L+  IL+          DP  GSGTS  VAK L    +G+++   +   +I       
Sbjct: 84  LIKDILLHYNVKEF--CDPMLGSGTSLDVAKDLNIKCLGMDLNPKFGGFNIIKDEFPK 139


>gi|118430866|ref|NP_146941.2| hypothetical protein APE_0073.1 [Aeropyrum pernix K1]
 gi|116062189|dbj|BAA78982.2| hypothetical protein [Aeropyrum pernix K1]
          Length = 596

 Score = 40.4 bits (93), Expect = 0.51,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +I+DPF G GT    A ++    IG++     + +A  
Sbjct: 81  LIVDPFSGGGTIPLEASRMGYKAIGLDSNPYAVSVAKA 118


>gi|118431030|ref|NP_147212.2| hypothetical protein APE_0416.1 [Aeropyrum pernix K1]
 gi|116062357|dbj|BAA79372.2| conserved hypothetical protein [Aeropyrum pernix K1]
          Length = 1004

 Score = 40.4 bits (93), Expect = 0.51,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY 49
           +++  ++ +VL KL  +  D+I  DPPY
Sbjct: 554 RVLLDDA-TVLSKLEGERFDVIVTDPPY 580


>gi|90407351|ref|ZP_01215536.1| hypothetical protein PCNPT3_03917 [Psychromonas sp. CNPT3]
 gi|90311502|gb|EAS39602.1| hypothetical protein PCNPT3_03917 [Psychromonas sp. CNPT3]
          Length = 165

 Score = 40.4 bits (93), Expect = 0.51,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 33/53 (62%), Gaps = 3/53 (5%)

Query: 1   MSQKNSLAINENQNSIFEWKDK---IIKGNSISVLEKLPAKSVDLIFADPPYN 50
           + +++ L   + + ++   K +   +I+ +SIS L+++  KS ++IF DPP+N
Sbjct: 55  LLERDKLVCQQLKQNLQNLKVENALVIETDSISYLQQIAKKSFNIIFIDPPFN 107


>gi|326384405|ref|ZP_08206085.1| hypothetical protein SCNU_15774 [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326196750|gb|EGD53944.1| hypothetical protein SCNU_15774 [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 925

 Score = 40.4 bits (93), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 1/73 (1%)

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
             +IL S+      ILDPF G G+    A++L       ++    + +  K +  + P  
Sbjct: 109 HQKILESTDGNPPPILDPFAGGGSIPLEAQRLGLEAHASDLNPVAV-LINKALIEIPPKF 167

Query: 273 NIELTVLTGKRTE 285
             +  V  G  +E
Sbjct: 168 AGQPPVFPGAASE 180


>gi|257468996|ref|ZP_05633090.1| ribosomal protein L11 methyltransferase [Fusobacterium ulcerans
           ATCC 49185]
          Length = 310

 Score = 40.4 bits (93), Expect = 0.51,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYI 258
           G   HPT    +L  +++  + K GD ++D   GSG     A +L  S I G ++ +  +
Sbjct: 151 GTGSHPTT---SLCLKLMEENIKAGDSVIDVGTGSGILMIAADRLGASEIYGTDIDELAV 207

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + A + +   +  GN          +        +V   ++    +L     +IS  V  
Sbjct: 208 ESAKENLELNKIDGNKAKVFKGDLISVVENKKFDVVVANIL--ADVLLILLNDISKVVKK 265

Query: 319 DGTLISGTEL 328
           DG +I    +
Sbjct: 266 DGLIIFSGII 275


>gi|317063244|ref|ZP_07927729.1| ribosomal protein L11 methyltransferase [Fusobacterium ulcerans
           ATCC 49185]
 gi|313688920|gb|EFS25755.1| ribosomal protein L11 methyltransferase [Fusobacterium ulcerans
           ATCC 49185]
          Length = 312

 Score = 40.4 bits (93), Expect = 0.52,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYI 258
           G   HPT    +L  +++  + K GD ++D   GSG     A +L  S I G ++ +  +
Sbjct: 153 GTGSHPTT---SLCLKLMEENIKAGDSVIDVGTGSGILMIAADRLGASEIYGTDIDELAV 209

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + A + +   +  GN          +        +V   ++    +L     +IS  V  
Sbjct: 210 ESAKENLELNKIDGNKAKVFKGDLISVVENKKFDVVVANIL--ADVLLILLNDISKVVKK 267

Query: 319 DGTLISGTEL 328
           DG +I    +
Sbjct: 268 DGLIIFSGII 277


>gi|312622232|ref|YP_004023845.1| 50S ribosomal protein L11 methyltransferase [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202699|gb|ADQ46026.1| ribosomal protein L11 methyltransferase [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 306

 Score = 40.4 bits (93), Expect = 0.52,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKK-LRRSFIGIEMKQDYIDIATK--RIASV 268
           L    +    KPG  +LD   GSG     AKK L R  + +++ +  + +A +  R+  V
Sbjct: 157 LCLEAIQKYVKPGMDVLDVGTGSGILAIAAKKFLARRVLAVDIDEVAVKVAEENARLNGV 216

Query: 269 Q 269
           +
Sbjct: 217 E 217


>gi|291237089|ref|XP_002738464.1| PREDICTED: CG10903-like [Saccoglossus kowalevskii]
          Length = 283

 Score = 40.4 bits (93), Expect = 0.52,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 210 EALLSRILVSSTKPGD---IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           E +  R +     P D   +ILD   GSG SG    +    ++GI++    +DIA +R
Sbjct: 36  EQMSERAIELLALPEDTPCLILDLGCGSGLSGESLTEQGHIWMGIDISSHMLDIALER 93


>gi|89071135|ref|ZP_01158333.1| Cfa, cyclopropane-fatty-acyl-phospholipid synthase [Oceanicola
           granulosus HTCC2516]
 gi|89043320|gb|EAR49543.1| Cfa, cyclopropane-fatty-acyl-phospholipid synthase [Oceanicola
           granulosus HTCC2516]
          Length = 399

 Score = 40.4 bits (93), Expect = 0.52,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 70/211 (33%), Gaps = 25/211 (11%)

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
                 +    GR        L     +   +    +YD   A   D+ +  D       
Sbjct: 89  RGHDPGIMRATGRALTPVQRWLSHNWRAGSKRNVQHHYDLSGALY-DLFLDEDRQYSCAY 147

Query: 191 GSERLRN----KDGEKLHPTQKPEALLSRILVSSTKPGDIILDP-FFGSGTSGAVAKKLR 245
             E   +    ++ +K H  +K             +PGD +LD      G +  +A+   
Sbjct: 148 FPEPDMSLEAAQEAKKRHIARK----------LLIEPGDRVLDIGCGWGGMALTLARDFG 197

Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLI-QPGQI 304
              +G+ + ++   IA +R+A  Q    I++ +   +  E    F  +V  G+    G  
Sbjct: 198 ARVVGVTLSEEQHRIARERVAQAQLSDRIDIRLQDYREVEG--PFERIVSVGMFEHVGAT 255

Query: 305 LTNAQGNISATVCADGTLISGTELGSIHRVG 335
                    A V     L+S   +  IH +G
Sbjct: 256 HF---REYFAKVAE---LLSPKGVALIHTIG 280


>gi|288574648|ref|ZP_06393005.1| methyltransferase small [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570389|gb|EFC91946.1| methyltransferase small [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 248

 Score = 40.4 bits (93), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 13/122 (10%)

Query: 3   QKNSLAINENQNSIFEWKDKI--IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           Q+N + + E    + E  D++  I G+   + + LP +  D++ A+PPY    +   +R 
Sbjct: 75  QENLVHMAEKNRELNELSDRVSFIHGDLREIHKILPPQGFDVVVANPPYG---DPTRHRT 131

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
            +   + +       S              ACR +L   G  + + +   +  +   L+ 
Sbjct: 132 GNRSENVLAKHGVVCS--------VEDVAEACRYLLGDKGRAYFVFAAERLVDLLCALRY 183

Query: 121 LN 122
             
Sbjct: 184 RG 185


>gi|13542247|ref|NP_111935.1| adenine-specific DNA methylase [Thermoplasma volcanium GSS1]
 gi|14325681|dbj|BAB60584.1| modification methylase [Thermoplasma volcanium GSS1]
          Length = 382

 Score = 40.4 bits (93), Expect = 0.52,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 4/82 (4%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR----IAS 267
           +  ++L         + DP+ G+GTS   A  L  + IG ++      IA  +    I  
Sbjct: 5   VARKLLYLYGSNAKTVFDPYCGTGTSLVEAMLLGINGIGTDLNPLAQLIAKAKTNAYIDY 64

Query: 268 VQPLGNIELTVLTGKRTEPRVA 289
              +  IE       + +P V 
Sbjct: 65  KSVISEIEKFNENADKLDPIVP 86


>gi|308048176|ref|YP_003911742.1| (50S ribosomal protein L11P)-lysine N-methyltransferase [Ferrimonas
           balearica DSM 9799]
 gi|307630366|gb|ADN74668.1| (LSU ribosomal protein L11P)-lysine N-methyltransferase [Ferrimonas
           balearica DSM 9799]
          Length = 295

 Score = 40.4 bits (93), Expect = 0.52,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 52/171 (30%), Gaps = 12/171 (7%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S    P       + +     G   HPT    AL    
Sbjct: 95  WEREWMDNFHPMQFGRRLWICPSWREAPEPDAVNVMLDPGLAFGTGTHPTT---ALCLTW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF-IGIEMKQDYIDIATKRIASVQPLGNIE 275
           L         ++D   GSG     A KL     +G+++    +  +     + Q  G  E
Sbjct: 152 LDGLELGDKSVVDFGCGSGILAIAAIKLGAQSVVGLDIDPQALTASAD---NAQRNGVEE 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGT 326
              +   + +P      +V   ++     L      ISA V   G L    
Sbjct: 209 KLTVYLPKNQPDDLQADVVVANIL--AGPLRELAPVISALVKPGGQLALSG 257


>gi|256617867|ref|ZP_05474713.1| phage protein [Enterococcus faecalis ATCC 4200]
 gi|256597394|gb|EEU16570.1| phage protein [Enterococcus faecalis ATCC 4200]
          Length = 444

 Score = 40.4 bits (93), Expect = 0.52,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 55/160 (34%), Gaps = 21/160 (13%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           I  +S+++   +  +S DL+F  PPY    + ++Y  D   +  +        S+E +  
Sbjct: 278 ICDDSLNIDHHIEDESQDLLFTCPPY---ADLEVYSDDERDISNM--------SYEEFAE 326

Query: 84  FTRAWLLACRRVLKPNG----TLWVIGSYHNIFR-----IGTMLQNLNFWILNDIVWRKS 134
                L    R LK N     T+  +      ++               +  ND++   +
Sbjct: 327 VYSEILKRSARKLKDNRFAVVTISDVRDKKGFYQDLTGLTKRAFSKEGLYFYNDMILLNA 386

Query: 135 NPMPNFRGRR-FQNAHETLIWASPSPKAKGYTFNYDALKA 173
               + R RR   N   T +  +     KG   N +    
Sbjct: 387 VGSGSLRARRLMNNRKVTRMHQNVLVFYKGNPKNINQHFE 426


>gi|261403135|ref|YP_003247359.1| adenine-specific DNA methylase [Methanocaldococcus vulcanius M7]
 gi|261370128|gb|ACX72877.1| adenine-specific DNA methylase [Methanocaldococcus vulcanius M7]
          Length = 703

 Score = 40.4 bits (93), Expect = 0.52,   Method: Composition-based stats.
 Identities = 20/161 (12%), Positives = 44/161 (27%), Gaps = 23/161 (14%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ------------------LYRPDHSL 64
           +   ++   L+K+    VDL+  DPPY   +N                       P    
Sbjct: 456 VYCMDA-QDLDKIVKDKVDLVITDPPYFDSINYSEVYEFFYVWLKLALDYECFKNPSAIN 514

Query: 65  VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG-TLWVIGSYHNIFRIGT--MLQNL 121
            +    +  +    E +             VLK NG  ++    +     +    +++  
Sbjct: 515 QNEAIVNEIQNKDKEHFKKILTNIFRKSANVLKDNGMFIFTFHDFSKEAWVDMLEIVKKA 574

Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
              +     +   N      G   ++  + +         K
Sbjct: 575 GLSVKKIHFYHGENVSAGHFGG-QKSVFDGIWVCKKEKIEK 614



 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ILDP  G GT+     +L    IG E+  
Sbjct: 83  ILDPMCGGGTTLIEGSRLGAKVIGFEINP 111


>gi|268315830|ref|YP_003289549.1| methyltransferase [Rhodothermus marinus DSM 4252]
 gi|262333364|gb|ACY47161.1| methyltransferase [Rhodothermus marinus DSM 4252]
          Length = 182

 Score = 40.4 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNL 51
           + I+G+++  L +      DLI ADPPY+L
Sbjct: 96  EFIRGDAVEYLRRYSGPPFDLILADPPYDL 125


>gi|2865603|gb|AAC97183.1| SapI M1 methyltransferase [Saccharopolyspora sp.]
          Length = 376

 Score = 40.4 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           KP +L   ++ + +  G  +LDP  G GT    A    R  I  +       +   ++A
Sbjct: 45  KP-SLAHWLVKTFSPEGGTVLDPMGGVGTIAFEAALTGRVGITNDKSPLAATVTAGKLA 102


>gi|15674247|ref|NP_268422.1| hypothetical protein L141634 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12725336|gb|AAK06363.1|AE006455_9 hypothetical protein L141634 [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 196

 Score = 40.4 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 47/130 (36%), Gaps = 19/130 (14%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSG--TSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           K   +   +L    K  D+++D   G+G  T      +L  +    +++++ ++   KR+
Sbjct: 3   KQLEMAHWMLKDIIKTNDVVVDATMGNGYDTQFLA--ELGANVYAFDVQEEALNATEKRL 60

Query: 266 ASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL------------TNAQGNIS 313
                   I    L+   TEP V    LV  G  +  + +               + + S
Sbjct: 61  DDAGIKNQIFEKNLSKLLTEPSVN---LVLSGHEKLSEYVKEPIKAAIFNLGYLPKTDKS 117

Query: 314 ATVCADGTLI 323
               AD TL 
Sbjct: 118 VVTKADTTLT 127


>gi|307243233|ref|ZP_07525404.1| O-methyltransferase [Peptostreptococcus stomatis DSM 17678]
 gi|306493361|gb|EFM65343.1| O-methyltransferase [Peptostreptococcus stomatis DSM 17678]
          Length = 214

 Score = 40.4 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 5/48 (10%)

Query: 3   QKNSLAINENQNSI----FEWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
           ++N L +   Q +I     E + KI+ G++   L+ L   S D+IF D
Sbjct: 87  ERNPLMLERAQENIKKAGMEDRIKILVGDAEETLKDLE-GSFDMIFID 133


>gi|289640646|ref|ZP_06472818.1| DNA methyltransferase [Frankia symbiont of Datisca glomerata]
 gi|289509535|gb|EFD30462.1| DNA methyltransferase [Frankia symbiont of Datisca glomerata]
          Length = 426

 Score = 40.4 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++ DPF G+GT+   A +L R    +++  
Sbjct: 53  VVTDPFSGTGTTPLAAAELGRYGQSVDVNP 82



 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY 49
           I +G+S + +++L     DLI   PPY
Sbjct: 240 IHQGDSRTRIDQLRE--ADLIITSPPY 264


>gi|293335775|ref|NP_001170403.1| hypothetical protein LOC100384389 [Zea mays]
 gi|224035659|gb|ACN36905.1| unknown [Zea mays]
          Length = 401

 Score = 40.4 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT K   L    L    K G+ +LD   G+G  G  A K+      GI++    I
Sbjct: 219 GMGEHPTTK---LCLLFLREVIKGGECVLDYGTGTGVLGIAALKMGATQSTGIDIDPQAI 275

Query: 259 DIATKRI 265
             A++ +
Sbjct: 276 ASASENL 282


>gi|289193008|ref|YP_003458949.1| ribosomal L11 methyltransferase [Methanocaldococcus sp. FS406-22]
 gi|288939458|gb|ADC70213.1| ribosomal L11 methyltransferase [Methanocaldococcus sp. FS406-22]
          Length = 209

 Score = 40.4 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 58/153 (37%), Gaps = 26/153 (16%)

Query: 199 DGEKLHPTQKPE--------ALLSRILVSSTK--PGDIILDPFFGSGTSGAVAKKLR-RS 247
           D  K HP+ K +         L S IL  +      ++++D   G+G     +K L  + 
Sbjct: 12  DSLKRHPSPKVDLEQYTIDGKLASDILFFAVNDFYNNVVIDLGCGTGRLAIGSKLLGAKR 71

Query: 248 FIGIEMKQDYIDIATKRIASVQ--------PLGNIELTVLTGKRTEPRVAFNLLVERGLI 299
            IGI++ ++ I+ A +    +          + +++   L     E R    ++++    
Sbjct: 72  AIGIDIDRESIEAAKENAKKLNVDVDFYCMDVRDVDDEFLNKVLGEDRDLKRVVIQNPP- 130

Query: 300 QPGQILTNAQGNISATVCADGTLISGTELGSIH 332
                   AQ   +  +  D  L  G  + +IH
Sbjct: 131 ------FGAQKKHADRLFLDKALEIGDVIYTIH 157


>gi|169834700|ref|YP_001693277.1| DNA modification methylase [Clostridium botulinum B1 str. Okra]
 gi|169123248|gb|ACA47083.1| DNA modification methylase [Clostridium botulinum B1 str. Okra]
          Length = 256

 Score = 40.4 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY--IDIATKRIAS 267
           L+  IL+          DP  GSGTS  VAK L    +G+++   +   +I       
Sbjct: 84  LIKDILLHYNVKEF--CDPMLGSGTSLDVAKDLNIKCLGMDLNPKFGGFNIIKDEFPK 139


>gi|254519875|ref|ZP_05131931.1| ribosomal protein L11 methyltransferase [Clostridium sp. 7_2_43FAA]
 gi|226913624|gb|EEH98825.1| ribosomal protein L11 methyltransferase [Clostridium sp. 7_2_43FAA]
          Length = 313

 Score = 40.4 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 8/124 (6%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSSTKPG 224
            Y       E + ++  W      G E +   D      T   E   +  + L    K  
Sbjct: 119 KYYKPTKVGEKIVVKPIWEEYDAQGEELVVELDPGMAFGTGTHETTRMCIQSLEKYVKED 178

Query: 225 DIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYIDIATK-----RIASVQPLGNIELTV 278
             + D   GSG     A KL     +G+++    ++ A +      + ++Q L    + V
Sbjct: 179 STVFDVGCGSGILAIAAAKLGSKMAVGVDLDPVAVESAKENVGYNNLENIQILYGNLVEV 238

Query: 279 LTGK 282
           + GK
Sbjct: 239 IDGK 242


>gi|149922591|ref|ZP_01911020.1| hypothetical protein PPSIR1_06733 [Plesiocystis pacifica SIR-1]
 gi|149816547|gb|EDM76043.1| hypothetical protein PPSIR1_06733 [Plesiocystis pacifica SIR-1]
          Length = 265

 Score = 40.4 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 1/78 (1%)

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
           D +L+   G     A   +  RS +G++++ + +D+A  R A++  LG   L ++     
Sbjct: 32  DSVLELGCGDARVLAALARPGRSLVGVDLEPELLDLARARRAAMGELGE-TLELVASDMA 90

Query: 285 EPRVAFNLLVERGLIQPG 302
            P +      ER +I  G
Sbjct: 91  APELELGRRFERVIIPYG 108


>gi|110598419|ref|ZP_01386691.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031]
 gi|110339953|gb|EAT58456.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031]
          Length = 181

 Score = 40.4 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           E + KI+  +  + L + P+K  DL+F DPPY+    GQL   
Sbjct: 92  EERVKIVNADVSAFLSR-PSKPFDLVFCDPPYSWPDYGQLIEK 133


>gi|210610070|ref|ZP_03288249.1| hypothetical protein CLONEX_00435 [Clostridium nexile DSM 1787]
 gi|210152681|gb|EEA83687.1| hypothetical protein CLONEX_00435 [Clostridium nexile DSM 1787]
          Length = 317

 Score = 40.0 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 61/175 (34%), Gaps = 18/175 (10%)

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
           ++  E + W +   +     +  D L   + +     D    I           G  +H 
Sbjct: 100 ESQTEDVDWVNNWKQYFHQFYVDDVLIIPSWEEVKPEDEDKMIIHID--PGTAFGTGMHE 157

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF-IGIEMKQDYIDIATKR 264
           T     L  R +     P   ILD   GSG  G +A K    + +G ++    ID   + 
Sbjct: 158 TT---QLCIRQIRKYVTPDTTILDVGCGSGILGMLALKFGAKYSVGTDLDPCAIDATYE- 213

Query: 265 IASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
                   N+E+  +T  + E  V    +++   +Q  ++       + A + AD
Sbjct: 214 --------NMEVNGITKDQYE--VMIGNIIDDKEVQD-KVGYEKYDIVVANILAD 257


>gi|188591330|ref|YP_001795929.1| putative restriction endonuclease/methyltransferase [Cupriavidus
           taiwanensis]
 gi|170938725|emb|CAP63711.1| putative restriction endonuclease/methyltransferase [Cupriavidus
           taiwanensis LMG 19424]
          Length = 1068

 Score = 40.0 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 14/68 (20%)

Query: 209 PEALLSRILVSS-TKPGDIILDPFFGSGTSGAVAKK-------------LRRSFIGIEMK 254
           P+ L  +I+  +       +LDP  GSG+    A               + R  +GI++ 
Sbjct: 335 PDWLCEKIVEETRFTETYRVLDPACGSGSFLRAAIAKMRNESPQIDATTISRRVVGIDIH 394

Query: 255 QDYIDIAT 262
              + IA 
Sbjct: 395 PLSVQIAK 402


>gi|237749095|ref|ZP_04579575.1| ribosomal protein L11 methyltransferase [Oxalobacter formigenes
           OXCC13]
 gi|229380457|gb|EEO30548.1| ribosomal protein L11 methyltransferase [Oxalobacter formigenes
           OXCC13]
          Length = 303

 Score = 40.0 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 61/188 (32%), Gaps = 20/188 (10%)

Query: 150 ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL-IPICSGSERLRNKD---GEKLHP 205
           E ++   P       T +        E + +   W  IP  SG     +     G   HP
Sbjct: 91  EFILREVPDEDWVRVTQSQFDPIHIGEKIWIVPSWHEIPDQSGIVLELDPGLAFGTGSHP 150

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYI----DI 260
           T +   L    L  + K    +LD   GSG     A KL   +  G+++    I    + 
Sbjct: 151 TTR---LCLEWLEKNVKKEQTLLDYGCGSGILAIAAIKLGASNVTGVDIDPQSIITSNEN 207

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A +   S       E       R    V  N+L   G ++           ++  +  +G
Sbjct: 208 AERNHCSFSCHLPDEFPSFEPDRQYDIVVANIL--AGPLK------TLTKTLTERIRKNG 259

Query: 321 TLISGTEL 328
           +L+    L
Sbjct: 260 SLVLSGIL 267


>gi|187929247|ref|YP_001899734.1| 3-hydroxy-acyl-CoA dehydrogenase [Ralstonia pickettii 12J]
 gi|187726137|gb|ACD27302.1| 3-hydroxybutyryl-CoA dehydrogenase [Ralstonia pickettii 12J]
          Length = 502

 Score = 40.0 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 49/146 (33%), Gaps = 13/146 (8%)

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA------SVQPLGNIELTVLTGKRTE 285
            G G +   A +        +     ++ A   +A      + +     +    T  R  
Sbjct: 12  MGRGIAQIAA-QAGLRVKLFDANPQAVEAARTALADTLAKLAAKGKLTADEADATIARLI 70

Query: 286 PRVAFNLL-----VERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSG 340
           P  A + L     V   +++   +  +    +   V AD  L S T   SI  + A    
Sbjct: 71  PAGALSDLADCDLVVEAIVEKLDVKRDLFRQLEDIVRADAILASNTSSLSITAIAATCKH 130

Query: 341 SETCNGWNFWY-FEKLGELHSINTLR 365
            E   G++F+     +  +  I+ LR
Sbjct: 131 PERVAGFHFFNPVPLMKVVEVIDGLR 156


>gi|162454174|ref|YP_001616541.1| putative N6-adenine DNA/RNA methylase [Sorangium cellulosum 'So ce
           56']
 gi|161164756|emb|CAN96061.1| putative N6-adenine DNA/RNA methylase [Sorangium cellulosum 'So ce
           56']
          Length = 461

 Score = 40.0 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 224 GDIILDPFFGSGTSGAVAKKLR--RSFIGIEMKQDYIDIATKRIASV 268
            D++ DPF GSG        L   R  +G +     + IA + + + 
Sbjct: 226 DDVVWDPFVGSGLELCERALLGPYRRLVGSDRDPRALQIARENLDAA 272


>gi|326790887|ref|YP_004308708.1| methyltransferase [Clostridium lentocellum DSM 5427]
 gi|326541651|gb|ADZ83510.1| methyltransferase [Clostridium lentocellum DSM 5427]
          Length = 184

 Score = 40.0 bits (92), Expect = 0.56,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNL 51
           K++  +    L++L  +  D+IF DPPY L
Sbjct: 94  KVVASDVFEALKRLEGEQFDIIFMDPPYAL 123


>gi|281420491|ref|ZP_06251490.1| putative methyltransferase [Prevotella copri DSM 18205]
 gi|281405264|gb|EFB35944.1| putative methyltransferase [Prevotella copri DSM 18205]
          Length = 176

 Score = 40.0 bits (92), Expect = 0.56,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 1/99 (1%)

Query: 6   SLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV 65
           +  I +    + E KD +I+G+    L+    +  D IFADPPY L+   Q+     +  
Sbjct: 79  ANFIRQCFQKLGEDKDILIRGDVFRFLKTCK-QKFDFIFADPPYALKELPQIPDLVLNGD 137

Query: 66  DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
                    F   + YD       L  R     N +++ 
Sbjct: 138 YLNEGGIFVFEHGKDYDFSEHPRFLEHRSYGSVNFSIFR 176


>gi|254525059|ref|ZP_05137114.1| hypothetical protein SSKA14_4199 [Stenotrophomonas sp. SKA14]
 gi|219722650|gb|EED41175.1| hypothetical protein SSKA14_4199 [Stenotrophomonas sp. SKA14]
          Length = 162

 Score = 40.0 bits (92), Expect = 0.56,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 30/86 (34%), Gaps = 19/86 (22%)

Query: 24  IKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW---DKFSSF 78
           I  + +     LP    S  L+  DPP               LV A  DSW         
Sbjct: 47  IHPDCLLDFRALPFADDSFPLVVFDPP--------------HLVRAGRDSWLAAKYGRLS 92

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWV 104
           + + A  RA    C RVL+P G L  
Sbjct: 93  KDWRADLRAGFAECFRVLRPEGVLIF 118


>gi|170039089|ref|XP_001847378.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167862728|gb|EDS26111.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 489

 Score = 40.0 bits (92), Expect = 0.56,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
             + GD++LDPF GSG+    A K     +G ++ 
Sbjct: 213 LVRQGDLVLDPFVGSGSLLVAAAKFGAYVLGSDID 247


>gi|325290540|ref|YP_004266721.1| (LSU ribosomal protein L11P)-lysine N-methyltransferase
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324965941|gb|ADY56720.1| (LSU ribosomal protein L11P)-lysine N-methyltransferase
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 312

 Score = 40.0 bits (92), Expect = 0.56,   Method: Composition-based stats.
 Identities = 48/262 (18%), Positives = 85/262 (32%), Gaps = 26/262 (9%)

Query: 96  LKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG--RRFQNAHETLI 153
           ++P G   + G +    RI  +L  +   +    V      + +  G  R    A E   
Sbjct: 55  MEPTGCCLIKGYFPEDERILDILSGIREGLARLKVLFPEWILRSETGTVRERDWADEWKK 114

Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL 213
           +  P    + +           +     +D LI I  G        G   HPT    +L 
Sbjct: 115 FFKPVRIGRRW----LIEPTWEKAEVQENDILIRIDPGM-----AFGTGTHPTT---SLC 162

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
              +    KPG  + D   GSG     A KL       ++    + IA +     Q  G 
Sbjct: 163 LEAIEDLVKPGMTVFDIGTGSGILAVAAAKLGGKVQAGDIDALAVRIAKENAELNQVEGK 222

Query: 274 IELTV-----LTGKRTEPRVA---FNLLVERGLIQPGQILTNAQGNISATVCADGTLISG 325
           + +       +   R +  +A    ++++E  L+   + L    G   A+   D  +   
Sbjct: 223 VTVEAGNLGDIFKGRADVVIANIVADVIIE--LLPQLENLMAEDGVFVASGIIDTRV--Q 278

Query: 326 TELGSIHRVGAKVSGSETCNGW 347
                I + G ++       GW
Sbjct: 279 DLETEIQKAGMRMIRKREDAGW 300


>gi|257784365|ref|YP_003179582.1| putative methyltransferase [Atopobium parvulum DSM 20469]
 gi|257472872|gb|ACV50991.1| putative methyltransferase [Atopobium parvulum DSM 20469]
          Length = 180

 Score = 40.0 bits (92), Expect = 0.56,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 33/98 (33%), Gaps = 15/98 (15%)

Query: 33  EKLP--AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
            KLP   KS +L+  DPP                     D + K  S +++         
Sbjct: 55  RKLPFSDKSFNLVIFDPP-----------HLDVGAGWQVDKYGKLDS-DSWHEDLAKGFS 102

Query: 91  ACRRVLKPNGTL-WVIGSYHNIFRIGTMLQNLNFWILN 127
            C RVLKP G L +    YH   +    L      I N
Sbjct: 103 ECLRVLKPYGVLVFKWYEYHIPLKDVLALCPAKPIIGN 140


>gi|300765857|ref|ZP_07075831.1| hypothetical protein LMHG_12453 [Listeria monocytogenes FSL N1-017]
 gi|300513434|gb|EFK40507.1| hypothetical protein LMHG_12453 [Listeria monocytogenes FSL N1-017]
          Length = 445

 Score = 40.0 bits (92), Expect = 0.56,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 49/136 (36%), Gaps = 26/136 (19%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           I  NS++  + +   S+DL+F  PPY               ++  +D+ +  S+ E Y+ 
Sbjct: 279 ITDNSLNADKHIEDNSMDLLFTCPPYF-------------DLEVYSDNKEDISNME-YEE 324

Query: 84  FTR---AWLLACRRVLKPNG-TLWVIGSYHNIFRI--------GTMLQNLNFWILNDIVW 131
           F +     L      LK N   + VI    +             ++ +    +  ND++ 
Sbjct: 325 FIKVYSEILDKAANKLKDNRFAIVVISDVRDKAGFYRDLTGLTKSVFEKNGIYFYNDLIL 384

Query: 132 RKSNPMPNFRGRRFQN 147
             S      R RR   
Sbjct: 385 LNSLGSGALRARRNMR 400



 Score = 36.9 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
             L  R    + K    I DPF G    G VAK L   + GI+++++ ++
Sbjct: 215 CELAYR--WFTPKESAKIYDPFAGGSVRGIVAKVLGHEYTGIDLRKEQVE 262


>gi|45358248|ref|NP_987805.1| N-6 adenine-specific DNA methylase [Methanococcus maripaludis S2]
 gi|44921005|emb|CAF30241.1| SAM (and some other nucleotide) binding motif:N-6 Adenine-specific
           DNA methylase [Methanococcus maripaludis S2]
          Length = 213

 Score = 40.0 bits (92), Expect = 0.56,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 56/157 (35%), Gaps = 18/157 (11%)

Query: 199 DGEKLHPTQKPE--------ALLSRILVSSTKPGD--IILDPFFGSGTSGAVAKKLR-RS 247
           D  K HP  K           L S  L+ + +  D   ++D   GSG     AK L    
Sbjct: 11  DNLKPHPKPKAHLEQYSIEGNLASEFLLFAKEDIDGSFVIDLGCGSGRLIIGAKVLGAEH 70

Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER--GLIQPGQIL 305
            +GI++ ++ ID A + + ++    N++L V         +      +         +++
Sbjct: 71  AVGIDIDEETIDTAKENLKNLNLDSNLDLKVDFLNSDVKNIDKKYFEDNFSEFNGLKKVV 130

Query: 306 -----TNAQGNISATVCADGTLISGTELGSIHRVGAK 337
                  +Q   +  +  D     G  + +IH    +
Sbjct: 131 IQNPPFGSQKKYADRIFLDKAFEIGDVIYTIHNTATR 167


>gi|296138794|ref|YP_003646037.1| O-methyltransferase family 3 [Tsukamurella paurometabola DSM 20162]
 gi|296026928|gb|ADG77698.1| O-methyltransferase family 3 [Tsukamurella paurometabola DSM 20162]
          Length = 220

 Score = 40.0 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 22/39 (56%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
            I   Q  +   + ++I G+++ VL +L  ++ DLIF D
Sbjct: 100 KIGFQQAGVAANRTRLINGHALDVLPRLADEAYDLIFID 138


>gi|254382316|ref|ZP_04997676.1| methyltransferase [Streptomyces sp. Mg1]
 gi|194341221|gb|EDX22187.1| methyltransferase [Streptomyces sp. Mg1]
          Length = 281

 Score = 40.0 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 19/110 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY-------NLQLNGQLYRPDHSLVDAVTDSWDK 74
            + +G+++S L +L    VDL+ ++PPY        +    + + P+ +L     D  D 
Sbjct: 161 TVHQGDALSALPEL-DGQVDLVISNPPYIPLTEWEYVAPEARDHDPEMALFSG-EDGLDT 218

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
               E              R+L+P G + +  +     ++  +      W
Sbjct: 219 IRGIE----------RTAHRLLRPGGIVVIEHADTQGGQVPWIFAEERGW 258


>gi|160933338|ref|ZP_02080726.1| hypothetical protein CLOLEP_02183 [Clostridium leptum DSM 753]
 gi|156867215|gb|EDO60587.1| hypothetical protein CLOLEP_02183 [Clostridium leptum DSM 753]
          Length = 210

 Score = 40.0 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
           +++  +S++ L + P    DL F DPPY   L
Sbjct: 121 RVVNMDSLAFLSQ-PNGKFDLAFLDPPYRTGL 151


>gi|121607103|ref|YP_994910.1| hypothetical protein Veis_0099 [Verminephrobacter eiseniae EF01-2]
 gi|121551743|gb|ABM55892.1| conserved hypothetical protein [Verminephrobacter eiseniae EF01-2]
          Length = 1071

 Score = 40.0 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 51/161 (31%), Gaps = 27/161 (16%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYN---------------LQLNGQLYRPDH----- 62
           +++G+S   L ++ + S+DL+  DPP+                L+L  +   PD+     
Sbjct: 658 VLQGSSTD-LAQIGSASLDLVITDPPFGGLLHYSELSDFFYVWLRLALKEKYPDYFGAEY 716

Query: 63  ---SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNIFRIGTM- 117
              SL      + +       Y            R+LKP G L +      +   +  + 
Sbjct: 717 TPKSLEAVANRAREPEDPDGFYQRLLTQCWREAHRLLKPGGILAFTFHHSEDEPWVAVLE 776

Query: 118 -LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
            L +  +++      R                ++ +     
Sbjct: 777 SLFDAGYYLEATYPIRSDETKGEGEFGSKTIEYDIIHVCRK 817



 Score = 36.5 bits (83), Expect = 7.4,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 18/47 (38%)

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
                + D F G GT+     +L    IG ++      +  + +A V
Sbjct: 113 FKHLKVADIFMGGGTTLVEGSRLGMQMIGNDLNPVAWFVVKQELADV 159


>gi|254495893|ref|ZP_05108802.1| ribosomal protein L11 methyltransferase [Legionella drancourtii
           LLAP12]
 gi|254354875|gb|EET13501.1| ribosomal protein L11 methyltransferase [Legionella drancourtii
           LLAP12]
          Length = 289

 Score = 40.0 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 59/196 (30%), Gaps = 23/196 (11%)

Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL----HPTQKPEALLSRILVSS 220
             +    +   + + +   W  P   G+  L    G       HPT    +L    L  +
Sbjct: 96  WMDDFKPQRFGKRLWICPTWSTPPEPGAVNLMLDPGLAFGTGTHPTT---SLCLTWLEQA 152

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
                 ++D   GSG     A KL       +++ Q  +        +          + 
Sbjct: 153 ELKRKSVIDYGCGSGILSLAALKLGAEQVYAVDIDQQALQATQ---NNALTNNLNAHNLH 209

Query: 280 TGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGT---ELGSIHRVGA 336
                E     NL++   L+ P   L   +      +  DG L+      E   +  + A
Sbjct: 210 VSFPDELSTPVNLIIANILLAP---LITLKERFQQLLHPDGQLVVSGLLSEQAPM-LIAA 265

Query: 337 -----KVSGSETCNGW 347
                 + G +  NGW
Sbjct: 266 YESLFLLVGQKELNGW 281


>gi|198283142|ref|YP_002219463.1| methyltransferase small [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|198247663|gb|ACH83256.1| methyltransferase small [Acidithiobacillus ferrooxidans ATCC 53993]
          Length = 407

 Score = 40.0 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 29/122 (23%)

Query: 24  IKGNSISVLEKLPA--KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           I G+++  L  L    +  DLI  DPP              +L+ +  D  +   ++  +
Sbjct: 278 IHGDAMETLHNLRDRGEQFDLIVLDPP--------------ALIKSKKDFKEGSIAYRRF 323

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR------IGTMLQNLNFWILNDIVWRKSN 135
           +           R+L P G L+     H++ R      I    Q  ++ I+ +      +
Sbjct: 324 NDM-------AMRLLTPGGILFSASCSHHLSRETLLSQIAFAAQRGDYQIIGEGSQDMDH 376

Query: 136 PM 137
           P+
Sbjct: 377 PV 378


>gi|160895340|ref|ZP_02076111.1| hypothetical protein CLOL250_02899 [Clostridium sp. L2-50]
 gi|156863033|gb|EDO56464.1| hypothetical protein CLOL250_02899 [Clostridium sp. L2-50]
          Length = 320

 Score = 40.0 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 50/146 (34%), Gaps = 5/146 (3%)

Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
           + +   I N++  R S  +P       ++  E + W +           YD +       
Sbjct: 75  EEIKTKIKNEL-ERLSEFIPVGACNIIESETEDVDWMNNWKAYFKPFRLYDNIVIKPTWE 133

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
              SD                G   H T +   L    L    K GD++LD   GSG   
Sbjct: 134 DAPSDVTDDDIVIDIDPGAAFGTGSHETTR---LCIGQLKKYMKEGDLVLDCGSGSGILS 190

Query: 239 AVAKKLR-RSFIGIEMKQDYIDIATK 263
            V   L  +  +GI++ +  + ++ +
Sbjct: 191 FVCSNLGAKEVLGIDIDETAVHVSIE 216


>gi|113476020|ref|YP_722081.1| type 11 methyltransferase [Trichodesmium erythraeum IMS101]
 gi|110167068|gb|ABG51608.1| Methyltransferase type 11 [Trichodesmium erythraeum IMS101]
          Length = 439

 Score = 40.0 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 43/107 (40%), Gaps = 8/107 (7%)

Query: 226 IILDPFFGSG--TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
           +ILD   GSG  +            +GI++ +  +++A +R+       N E  VL+ + 
Sbjct: 60  MILDAACGSGYKSLVLAEANPGAKIVGIDISEKSVELARQRLQ-YHGFDNAEFHVLSIEE 118

Query: 284 TEPR-VAFNLLV--ERGLIQPGQILTNAQGNISATVCADGTLISGTE 327
                + F+ +   E   + P  ++      + A +  DG + +   
Sbjct: 119 LPSLGLKFDYINNDEALYLLPDIVV--GLKAMKAVLKPDGIIRTNLH 163


>gi|240102844|ref|YP_002959153.1| RNA methylase, putative [Thermococcus gammatolerans EJ3]
 gi|239910398|gb|ACS33289.1| RNA methylase, putative [Thermococcus gammatolerans EJ3]
          Length = 366

 Score = 40.0 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 8/117 (6%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA-- 266
           P  L   ++  +     + LDPF G GT             G +   + +  A K I   
Sbjct: 176 PPRLARIMVNLTEVRRGLFLDPFCGIGTVLQEFVLQGLPAYGSDRDPERVREARKNIEWL 235

Query: 267 ----SVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
                ++    IE+      +   R  F+ +V    +  G+ L    G   A   A+
Sbjct: 236 RREFRLKNSARIEVCDARKLKRCFRERFDAIVTEPYL--GKPLKRNPGRGEAIKLAN 290


>gi|217034347|ref|ZP_03439763.1| hypothetical protein HP9810_491g40 [Helicobacter pylori 98-10]
 gi|216943232|gb|EEC22699.1| hypothetical protein HP9810_491g40 [Helicobacter pylori 98-10]
          Length = 389

 Score = 40.0 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 52/307 (16%), Positives = 99/307 (32%), Gaps = 29/307 (9%)

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM----LQNLNFWILNDIVWRKSNPMPNF 140
            + W     +V+  + +++  G +   F +         ++   +   I     + + + 
Sbjct: 11  FKQWKNGDYQVVFWDNSVYRNGEHSPKFTLKIHRPLKFSDIKKDMSLTIAEAYMDGVIDI 70

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS---------DWLIPICSG 191
            G   +  H   +  +     K                  +           WL    S 
Sbjct: 71  EGSMDEVMHSLYLQTNYEHLHKHDGAKAIQKPIKESSNISKHYDLGNDFYSIWLDETLSY 130

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG-TSGAVAKKLRRSFIG 250
           S     KDG+ LH  Q  + L   +     KPG+ +LD   G G  S   A++     +G
Sbjct: 131 SCAYFKKDGDTLHAAQL-QKLDHTLKKLHLKPGEKLLDIGCGWGYLSIKAAQEYGAQVMG 189

Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV-AFNLLVERGLI-QPGQILTNA 308
           I +  +    A KR+  +     + + +L  +  + R+  F+ +V  G+    G+     
Sbjct: 190 ITISSEQYKQANKRVQELGLEDKVTIKLLNYQDLDGRLYRFDKVVSVGMFEHVGKDNLPF 249

Query: 309 QGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
                  V   G +        +H +     G    N W   Y    G L S   LR ++
Sbjct: 250 YFKKVKEVLKRGGMFL------LHSILCCFEGKT--NAWVDKYIFPGGYLPS---LREVM 298

Query: 369 RKELYNC 375
              +  C
Sbjct: 299 -SVMSEC 304


>gi|328772166|gb|EGF82205.1| hypothetical protein BATDEDRAFT_86964 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 283

 Score = 40.0 bits (92), Expect = 0.58,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 211 ALLSRILVSSTKPGD---IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            +  R +     P D    ILD   GSG SG V +     ++G+++ +  +D+A +R
Sbjct: 35  EMTYRAIELLALPEDKSAYILDIGCGSGLSGEVLEDEGHVWVGLDISKSMLDVAVER 91


>gi|295696240|ref|YP_003589478.1| protein of unknown function DUF548 [Bacillus tusciae DSM 2912]
 gi|295411842|gb|ADG06334.1| protein of unknown function DUF548 [Bacillus tusciae DSM 2912]
          Length = 267

 Score = 40.0 bits (92), Expect = 0.58,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 19/26 (73%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADP 47
           +++ G+ +  L +LP +SVDL++ DP
Sbjct: 165 EVVWGDHVDYLRRLPDRSVDLVYFDP 190


>gi|70729260|ref|YP_258997.1| 23S rRNA m(2)G2445 methyltransferase [Pseudomonas fluorescens Pf-5]
 gi|123656894|sp|Q4KFI6|RLML_PSEF5 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|68343559|gb|AAY91165.1| methylase, putative [Pseudomonas fluorescens Pf-5]
          Length = 754

 Score = 40.0 bits (92), Expect = 0.58,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 20/95 (21%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           F  K+++ +G+ ++ L+    +  DLIF DPP         +     +        D+  
Sbjct: 641 FSDKNRLEQGDVMAWLDSCRDE-FDLIFIDPP--------TFSNSKRMEGVFDVQRDQVQ 691

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
             +          LA  R L P G L+   ++   
Sbjct: 692 LLD----------LAMAR-LAPGGVLYFSNNFRKF 715


>gi|326437505|gb|EGD83075.1| methyltransferase WBSCR22 [Salpingoeca sp. ATCC 50818]
          Length = 282

 Score = 40.0 bits (92), Expect = 0.58,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 207 QKPEALLSRILVSSTKPGDI---ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           Q    L  R L     P D    +LD   GSG SG         ++G ++  D +++A +
Sbjct: 30  QIQRELTERCLELLALPEDTPGFLLDIGCGSGLSGETISDHGHHWVGFDISGDMLEVAAE 89

Query: 264 R 264
           R
Sbjct: 90  R 90


>gi|111223806|ref|YP_714600.1| cyclopropane-fatty-acyl-phospholipid synthase [Frankia alni ACN14a]
 gi|111151338|emb|CAJ63051.1| Cyclopropane-fatty-acyl-phospholipid synthase [Frankia alni ACN14a]
          Length = 464

 Score = 40.0 bits (92), Expect = 0.58,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 76/231 (32%), Gaps = 47/231 (20%)

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKP-EALLSRILVSSTKPGDIILDPFFGSGTSG 238
               +L P  + S  +       L   Q     L+ R      +PG+ +LD   G G+  
Sbjct: 169 FYRVFLGPTMTYSCGVWESPAGGLDAAQTAKHELVCR--KLGLRPGERLLDVGCGWGSML 226

Query: 239 A-VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL----- 292
              A+      +G+ +  +    A +RIA    L +     L   R  P   F+      
Sbjct: 227 IHAARHHGVRGVGVTISVEQAAEARRRIAEA-GLTDAVEIRLQDYREIPDGPFDAISSVG 285

Query: 293 LVER--------------GLIQPGQILTNAQGNISATVCADGTLISGTELGSI------- 331
           +VE               GL++PG  L      IS+     G       LG I       
Sbjct: 286 MVEHVGRAMLPTYFASLYGLLRPGGRL--LNHGISSPGDPAGAYRYQPHLGPIPLPKGRD 343

Query: 332 ------------HRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRK 370
                       H +G   S ++   G+   + E L E + + TLR  VR 
Sbjct: 344 FLRRYVFPDGELHEIGLMTSLTQA-AGFEVRHVENLREHYGL-TLRAWVRA 392


>gi|78358462|ref|YP_389911.1| hypothetical protein Dde_3423 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78220867|gb|ABB40216.1| hypothetical protein Dde_3423 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 256

 Score = 40.0 bits (92), Expect = 0.58,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 5/47 (10%)

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY-----IDIATKRIAS 267
           ++LDPF G GTS   + +     IG ++          ++A  R+  
Sbjct: 47  VVLDPFIGGGTSLVESMRCNAWVIGFDIDPVATFITRFELAASRMGD 93


>gi|330812165|ref|YP_004356627.1| methylase [Pseudomonas brassicacearum subsp. brassicacearum NFM421]
 gi|327380273|gb|AEA71623.1| putative methylase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 426

 Score = 40.0 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 6/32 (18%)

Query: 26  GNSISVLEKLP--AKSVDLIFADPPYNLQLNG 55
           G+S    +KLP   +S+D +   PPY  +L+ 
Sbjct: 235 GDS----KKLPLDDESIDAVLTSPPYCTRLDY 262


>gi|253581983|ref|ZP_04859207.1| ribosomal protein L11 methyltransferase [Fusobacterium varium ATCC
           27725]
 gi|251836332|gb|EES64869.1| ribosomal protein L11 methyltransferase [Fusobacterium varium ATCC
           27725]
          Length = 312

 Score = 40.0 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 63/182 (34%), Gaps = 11/182 (6%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD-----GEKLHPTQ 207
            +       +     Y   +  +E   ++  W        E +   D     G   HPT 
Sbjct: 101 FYEYDEEDYQNSWKKYLFPEKVSEKFVVKPTWREYEPEDDELIIELDPGRAFGTGSHPTT 160

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATKRIA 266
              +L  +++  + K GD ++D   GSG     A +L  S I G ++ +  ++ A + + 
Sbjct: 161 ---SLCLKLMEENIKEGDSVIDVGTGSGILMIAADRLGASEIYGTDIDELAVESAKENLE 217

Query: 267 SVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGT 326
             +   N          +        +V   ++    +L     +IS  V  DG +I   
Sbjct: 218 LNKIDENKAKVFKGDLISVVENKKFDVVVANIL--ADVLLILLNDISKVVKKDGLIIFSG 275

Query: 327 EL 328
            +
Sbjct: 276 II 277


>gi|320527452|ref|ZP_08028633.1| RNA methyltransferase, RsmD family [Solobacterium moorei F0204]
 gi|320132165|gb|EFW24714.1| RNA methyltransferase, RsmD family [Solobacterium moorei F0204]
          Length = 186

 Score = 40.0 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 1/94 (1%)

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
           S ++  + G +  PT           +     G ++LD + GSG +G  A      +   
Sbjct: 10  SRKIETRAGNQTRPTLDKVREAVFSSLGGMFDGGMVLDLYAGSGANGLEALSRGYDYAVF 69

Query: 252 -EMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            ++ +D I +  K I S++ +G  ++  +  K+ 
Sbjct: 70  ADISKDAIHVIRKNIESLRCIGKTKVLHMPDKKA 103


>gi|284048740|ref|YP_003399079.1| methyltransferase [Acidaminococcus fermentans DSM 20731]
 gi|283952961|gb|ADB47764.1| methyltransferase [Acidaminococcus fermentans DSM 20731]
          Length = 184

 Score = 40.0 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)

Query: 24  IKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQL 57
           I  ++++ L  +    K+ DLIF+DPPYN  LN ++
Sbjct: 96  IHTDAVNGLAMMAQQGKTFDLIFSDPPYNKGLNRKV 131


>gi|224436931|ref|ZP_03657912.1| adenine-specific methyltransferase [Helicobacter cinaedi CCUG
           18818]
          Length = 352

 Score = 40.0 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYN 50
           K   G+S+ +L+    +S+D+++ DPPYN
Sbjct: 209 KCFCGDSVKLLQSFK-ESIDILYLDPPYN 236


>gi|218662422|ref|ZP_03518352.1| putative methyltransferase protein [Rhizobium etli IE4771]
          Length = 243

 Score = 40.0 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 217 LVSSTKPGDIILDPFFGSG-TSGAVAK-KLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
           + +    GD +LD   G+G T+   A+   +   +G+++  + +++A +R ++ + L N+
Sbjct: 20  IAAGVGAGDRVLDIGCGAGQTTREAARAATQGEAVGVDVSAEMLEVARRR-SAAEGLRNV 78

Query: 275 ELTVLTGK-RTEPRVAFNLLVER 296
                  +    PR  F+L + R
Sbjct: 79  VFEQADAQSHAFPRAGFDLCISR 101


>gi|218461071|ref|ZP_03501162.1| putative methyltransferase protein [Rhizobium etli Kim 5]
          Length = 160

 Score = 40.0 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 217 LVSSTKPGDIILDPFFGSG-TSGAVAK-KLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
           + +    GD +LD   G+G T+   A+   +   +G+++  + +++A +R ++ + L N+
Sbjct: 22  IAAGVGAGDRVLDIGCGAGQTTREAARAATQGEAVGVDVSAEMLEVARRR-SAAEGLRNV 80

Query: 275 ELTVLTGK-RTEPRVAFNLLVER 296
                  +    PR  F+L + R
Sbjct: 81  VFEQADAQSHAFPRAGFDLCISR 103


>gi|206975371|ref|ZP_03236284.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus
           H3081.97]
 gi|206746273|gb|EDZ57667.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus
           H3081.97]
          Length = 390

 Score = 40.0 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 77/214 (35%), Gaps = 12/214 (5%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
            + S    +K    +  A      +   +  WL    + S      + + L   Q    +
Sbjct: 96  YFKSKWNFSKQKNKDDIAYHYDIGNDFYKL-WLDETMTYSCAYFQNEQDSLTTAQ-HNKV 153

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
              +   + + GD +LD   G G    A AK+     +G+ + ++     ++RI   + L
Sbjct: 154 NHILKKLNLQKGDTLLDIGCGWGELITAAAKQYGVKAMGVTLSEEQYAKTSERIKQ-EGL 212

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLI-QPGQILTNAQGNISATVCADGTLISGTELGS 330
            ++    L   R      F+ +V  G+I   G+            +  DG +        
Sbjct: 213 TDLVEVSLLDYRDIKNRKFDKIVSVGMIEHVGKDNITQYFETVNKLLNDGGISL------ 266

Query: 331 IHRVGAKVSGSETCNGWNFWYFEKLGELHSINTL 364
           +H + +  +G  T NGW   Y    G + ++N L
Sbjct: 267 LHCITSPANGGAT-NGWIEKYIFPGGYVPAVNEL 299


>gi|90108472|pdb|1WS6|A Chain A, The Structure Of Thermus Thermphillus Hb8 Hypothetical
           Protein Ttha0928
          Length = 171

 Score = 40.0 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 20/95 (21%)

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK---------RIASV-----QPLGN 273
           LDPF GSG  G  A       + +E   + + +  +         R+ ++      P   
Sbjct: 46  LDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAK 105

Query: 274 IELTVLTGKRTEPRVA------FNLLVERGLIQPG 302
            +    T     P  A      F  L+  GL++ G
Sbjct: 106 AQGERFTVAFXAPPYAXDLAALFGELLASGLVEAG 140


>gi|218296340|ref|ZP_03497083.1| ribosomal L11 methyltransferase [Thermus aquaticus Y51MC23]
 gi|218243134|gb|EED09665.1| ribosomal L11 methyltransferase [Thermus aquaticus Y51MC23]
          Length = 252

 Score = 40.0 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 40/116 (34%), Gaps = 7/116 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G   H T +   L    L     PG+ +LD   GSG     A+KL    +G+++    + 
Sbjct: 100 GTGHHETTR---LALMALARHLSPGERVLDVGTGSGILAIAAEKLGGKALGVDVDPSVLP 156

Query: 260 IATKRIASVQPLGNIELTVLTGKRTE-PRVAFNLLVERGLIQPGQILTNAQGNISA 314
            A    A+ +  G     +L       P   F L+V     +    L        A
Sbjct: 157 QAE---ANARRNGVYPQFLLGSLEAALPLAPFGLIVANLFAELHAELAPLYREALA 209


>gi|159027510|emb|CAO89474.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 985

 Score = 40.0 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           P  KP+A +   +     P     DPF G G+    A++L     G ++    + + TK 
Sbjct: 136 PPTKPDA-IRDYIAKYAPPA---YDPFCGGGSIPLEAQRLGLQAHGSDLNPVAV-LITKA 190

Query: 265 IASVQPLGNIELTVLTGKRTEPRVA 289
           +  + P    +  V    R + +++
Sbjct: 191 LIEIPPKFKDQPPVNPDSRQKQKIS 215


>gi|66768045|ref|YP_242807.1| hypothetical protein XC_1722 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|66573377|gb|AAY48787.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 207

 Score = 40.0 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN 54
           ++++ +++  LE+ P   VDL+F DPP+   L 
Sbjct: 109 QVLQDDALRWLERAPTSQVDLVFVDPPFAAGLW 141


>gi|21910489|ref|NP_664757.1| putative DNA methyltransferase - phage associated [Streptococcus
           pyogenes MGAS315]
 gi|28876237|ref|NP_795454.1| putative DNA methyltransferase [Streptococcus pyogenes phage 315.2]
 gi|21904688|gb|AAM79560.1| putative DNA methyltransferase - phage-associated [Streptococcus
           pyogenes MGAS315]
          Length = 124

 Score = 40.0 bits (92), Expect = 0.61,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 21/103 (20%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
            IN N + I +++D          +    + S +L+  DPP +L+  GQ     +S++ A
Sbjct: 5   KINVNPDVIGDFRD----------MP-FESNSFNLVVFDPP-HLKYVGQ-----NSIMKA 47

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
                DK    E +          C RVLK  GTL    S   
Sbjct: 48  QYGQLDK----ENWKEDISKGFEECMRVLKVGGTLVFKWSDCQ 86


>gi|304313853|ref|YP_003849000.1| DNA methylase [Methanothermobacter marburgensis str. Marburg]
 gi|302587312|gb|ADL57687.1| predicted DNA methylase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 881

 Score = 40.0 bits (92), Expect = 0.61,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 29/127 (22%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY--NLQLN--------------GQLY-------- 58
           + +G+++S+         D +F DPPY  N+  +              G LY        
Sbjct: 481 VFQGSAVSL--PFDDDYFDAVFTDPPYYDNVPYSYLSDFFYVWLKRALGDLYPDLFMTPL 538

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG---TLWVIGSYHNIFRIG 115
            P    + A T+      + E +++  R       RVL+P G    ++   + H    + 
Sbjct: 539 TPKRGEMVAYTNDKSMDEAREEFESMLRDSFREIHRVLRPGGIANIVYAHKTTHGWETVI 598

Query: 116 TMLQNLN 122
             + +  
Sbjct: 599 NSILDSG 605



 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 18/52 (34%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           Q       R +         +LDPF G G+    A +L      +++    +
Sbjct: 82  QGMIERARRDIREYNGRPPRVLDPFGGGGSIPLEALRLGCETYSMDLNPVAV 133


>gi|254524921|ref|ZP_05136976.1| RNA methyltransferase, RsmD family [Stenotrophomonas sp. SKA14]
 gi|219722512|gb|EED41037.1| RNA methyltransferase, RsmD family [Stenotrophomonas sp. SKA14]
          Length = 192

 Score = 40.0 bits (92), Expect = 0.62,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 20/33 (60%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN 54
            +++ +++  L+  PA+  DL+F DPP+   L 
Sbjct: 104 TVVQADALRWLQSAPAQQADLVFIDPPFADGLW 136


>gi|171914465|ref|ZP_02929935.1| Methyltransferase small [Verrucomicrobium spinosum DSM 4136]
          Length = 233

 Score = 40.0 bits (92), Expect = 0.62,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 22  KIIKGNSISVLEKLPA--KSVDLIFADPPY 49
           K+ K ++ + L +L       DL+FADPPY
Sbjct: 99  KVTKADAFAALRRLADTGAKFDLVFADPPY 128


>gi|153814681|ref|ZP_01967349.1| hypothetical protein RUMTOR_00896 [Ruminococcus torques ATCC 27756]
 gi|145848175|gb|EDK25093.1| hypothetical protein RUMTOR_00896 [Ruminococcus torques ATCC 27756]
          Length = 458

 Score = 40.0 bits (92), Expect = 0.62,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 39/89 (43%), Gaps = 6/89 (6%)

Query: 206 TQKPEALLSRILVSSTKPGDI-ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT-- 262
           T+  E L   +        D+ + D F G+GT       + +  IG+E+ ++ ++ A   
Sbjct: 295 TKGAEVLYETVREYIGDIHDLTVFDLFSGTGTISQALAPVAKKVIGVEIVEEAVEAAKEN 354

Query: 263 -KR--IASVQPLGNIELTVLTGKRTEPRV 288
            +R  +++ + +      VL   + +P V
Sbjct: 355 AERNGLSNCEFIAGDVFEVLDDIKEKPDV 383


>gi|145345318|ref|XP_001417161.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577388|gb|ABO95454.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 239

 Score = 40.0 bits (92), Expect = 0.62,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 21/41 (51%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
            +N +  ++FE + + + GN   V++       D+I  DPP
Sbjct: 82  RMNPHSKALFEGEIEQLYGNGADVVKTFEDSCFDVIITDPP 122


>gi|16800805|ref|NP_471073.1| hypothetical protein lin1737 [Listeria innocua Clip11262]
 gi|16414224|emb|CAC96968.1| lin1737 [Listeria innocua Clip11262]
          Length = 445

 Score = 40.0 bits (92), Expect = 0.62,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 26/136 (19%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           I  NS++  + +   S+DL+F  PPY               ++  +D+ +  S+ E YD 
Sbjct: 279 ITDNSLNADKHIEDNSMDLLFTCPPYF-------------DLEVYSDNKEDISNME-YDE 324

Query: 84  FTRAWL----LACRRVLKPNGTLWVIGSYHNIFRI--------GTMLQNLNFWILNDIVW 131
           F + +         ++      + VI    +             ++ +    +  ND++ 
Sbjct: 325 FIKVYSEILDKGANKLKDNRFAIVVISDVRDKAGFYRDLTGLTKSIFEKNGIYFYNDLIL 384

Query: 132 RKSNPMPNFRGRRFQN 147
             S      R RR   
Sbjct: 385 LNSLGSGALRARRNMR 400



 Score = 36.5 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ-PLGNIELTVLTG 281
               I DPF G    G VAK L   + GI+++++ ++    RI + +  L  I       
Sbjct: 226 ESAKIYDPFAGGSVRGIVAKVLGHEYTGIDLRKEQVEA--NRINAKEIGLDGINWITDNS 283

Query: 282 KRTEPRVAFNLL 293
              +  +  N +
Sbjct: 284 LNADKHIEDNSM 295


>gi|323447959|gb|EGB03864.1| hypothetical protein AURANDRAFT_33432 [Aureococcus anophagefferens]
          Length = 286

 Score = 40.0 bits (92), Expect = 0.62,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 211 ALLSRILVSSTKPGD---IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            +  R +            +LD   GSG SGA  ++    ++G ++ +D + IA++R
Sbjct: 36  DIADRCIELLNLEPGKKKFVLDVGCGSGLSGAALERAGHEWVGCDVSRDMLRIASER 92


>gi|208435367|ref|YP_002267033.1| type II methylase [Helicobacter pylori G27]
 gi|208433296|gb|ACI28167.1| type II methylase [Helicobacter pylori G27]
          Length = 333

 Score = 40.0 bits (92), Expect = 0.62,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 9   INENQNSIFEWKDKII-KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
           I E  N I   K+ II + N+  + + L    +DL+F DPPYN +   + Y    +LV  
Sbjct: 171 IFELINPIKHDKNIIIERKNANELAKTLK---IDLVFIDPPYNSRQYSRFYHLYENLVQW 227

Query: 68  VT 69
             
Sbjct: 228 KK 229


>gi|182418924|ref|ZP_02950181.1| O-methyltransferase family protein [Clostridium butyricum 5521]
 gi|237667273|ref|ZP_04527257.1| O-methyltransferase, family 3 [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182377207|gb|EDT74775.1| O-methyltransferase family protein [Clostridium butyricum 5521]
 gi|237655621|gb|EEP53177.1| O-methyltransferase, family 3 [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 214

 Score = 40.0 bits (92), Expect = 0.62,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFAD 46
           K KI +G+ + VLE+L  K  DLIF D
Sbjct: 108 KIKIEQGDCLEVLERLDDK-FDLIFMD 133


>gi|282899358|ref|ZP_06307326.1| Putative methyltransferase [Cylindrospermopsis raciborskii CS-505]
 gi|281195725|gb|EFA70654.1| Putative methyltransferase [Cylindrospermopsis raciborskii CS-505]
          Length = 200

 Score = 40.0 bits (92), Expect = 0.63,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQL 57
           I++G+ +  L+KL  ++ D I+ DPPY   L  Q+
Sbjct: 94  ILRGDVLQQLKKLSGQTFDRIYFDPPYASNLYDQV 128


>gi|228940475|ref|ZP_04103043.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228973390|ref|ZP_04133977.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228979954|ref|ZP_04140272.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus
           thuringiensis Bt407]
 gi|228779710|gb|EEM27959.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus
           thuringiensis Bt407]
 gi|228786307|gb|EEM34299.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228819176|gb|EEM65233.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|326941111|gb|AEA17007.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 390

 Score = 40.0 bits (92), Expect = 0.63,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 77/214 (35%), Gaps = 12/214 (5%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
            + S    +K    +  A      +   +  WL    + S      + + L   Q    +
Sbjct: 96  YFKSKWNFSKQKNKDDIAHHYDIGNDFYKL-WLDETMTYSCAYFQNEQDSLTTAQ-HNKV 153

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
              +   + + GD +LD   G G    A AK+     +G+ + ++     ++RI   + L
Sbjct: 154 NHILKKLNLQKGDTLLDIGCGWGELITAAAKQYGVKAMGVTLSEEQFAKTSERIKQ-EGL 212

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLI-QPGQILTNAQGNISATVCADGTLISGTELGS 330
            ++    L   R      F+ +V  G+I   G+            +  DG +        
Sbjct: 213 TDLVEVSLLDYRDIRNRKFDKIVSVGMIEHVGKDNITQYFETVNKLLNDGGISL------ 266

Query: 331 IHRVGAKVSGSETCNGWNFWYFEKLGELHSINTL 364
           +H + +  +G  T NGW   Y    G + ++N L
Sbjct: 267 LHCITSPANGGAT-NGWIEKYIFPGGYVPAVNEL 299


>gi|123455456|ref|XP_001315472.1| MGC78809 protein [Trichomonas vaginalis G3]
 gi|121898150|gb|EAY03249.1| MGC78809 protein, putative [Trichomonas vaginalis G3]
          Length = 453

 Score = 40.0 bits (92), Expect = 0.63,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 13/114 (11%)

Query: 146 QNAHETLIWASPSPKAKGYT---FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
              H  +++    P+ K        Y  ++ A    +M   + +       +   +    
Sbjct: 138 NPKHTIVVYIRRVPEQKSTITEERYYFGIQLAKGAFEMPDKYSLKTRKFINKTSMESSVA 197

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           +H            +     PG I+ DPF GSG+    A  L    +G +    
Sbjct: 198 IHA----------CVQGLAGPGKIVYDPFVGSGSLLIAAASLGAYALGSDYDMK 241


>gi|312875573|ref|ZP_07735574.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF
           2053A-b]
 gi|311088827|gb|EFQ47270.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF
           2053A-b]
          Length = 417

 Score = 40.0 bits (92), Expect = 0.64,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 7/76 (9%)

Query: 46  DPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI 105
           DPPYN      +Y       D+  D  D + S   + +F    L   + +L   G +++ 
Sbjct: 90  DPPYNTGNKDFIYD------DSFVDKTDGY-SHSKWLSFMSERLEIAKLLLSEEGVIFIS 142

Query: 106 GSYHNIFRIGTMLQNL 121
              H   ++  +  ++
Sbjct: 143 IDDHEQAQLKLLCDSV 158


>gi|182419838|ref|ZP_02951078.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium butyricum
           5521]
 gi|237666723|ref|ZP_04526708.1| 23S rRNA-methyltransferase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376386|gb|EDT73968.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium butyricum
           5521]
 gi|237657922|gb|EEP55477.1| 23S rRNA-methyltransferase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 451

 Score = 40.0 bits (92), Expect = 0.64,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 8/90 (8%)

Query: 206 TQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATK 263
           T+  E L S +          ++ D + G+GT G  VA K +   IGIE+ ++ ++ A +
Sbjct: 289 TKGAEQLYSMVRDFMGDSENKVVFDLYCGTGTIGQIVAPKAK-KVIGIELIEEAVEAAKE 347

Query: 264 R-----IASVQPLGNIELTVLTGKRTEPRV 288
                 + + + L      ++   + +P +
Sbjct: 348 NAKLNGLENCEFLAGDVAEIIKNVKDKPDI 377


>gi|256810806|ref|YP_003128175.1| methyltransferase small [Methanocaldococcus fervens AG86]
 gi|256794006|gb|ACV24675.1| methyltransferase small [Methanocaldococcus fervens AG86]
          Length = 210

 Score = 40.0 bits (92), Expect = 0.64,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 57/153 (37%), Gaps = 26/153 (16%)

Query: 199 DGEKLHPTQKPE--------ALLSRILVSSTK--PGDIILDPFFGSGTSGAVAKKLR-RS 247
           D  K HP  K +         L S IL  +     G++++D   G+G     +K L  + 
Sbjct: 12  DSLKSHPNPKADLEQYTIDGKLASDILFFAVNDFYGNVVIDLGCGTGRLAIGSKILGAKR 71

Query: 248 FIGIEMKQDYIDIATKRIASVQ--------PLGNIELTVLTGKRTEPRVAFNLLVERGLI 299
            IGI++ ++ I+ A +               + +++   L     E +    ++++    
Sbjct: 72  AIGIDIDKESIETAKENAKKANVDVDFYCMDIRDVDNEFLNDILGEGKNLKKVVIQNPP- 130

Query: 300 QPGQILTNAQGNISATVCADGTLISGTELGSIH 332
                   AQ   +  +  D  L  G  + +IH
Sbjct: 131 ------FGAQKKHADRIFLDKALEIGDIIYTIH 157


>gi|320160950|ref|YP_004174174.1| hypothetical protein ANT_15460 [Anaerolinea thermophila UNI-1]
 gi|319994803|dbj|BAJ63574.1| hypothetical protein ANT_15460 [Anaerolinea thermophila UNI-1]
          Length = 404

 Score = 40.0 bits (92), Expect = 0.65,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAK--SVDLIFADPP 48
           N   N + E +++ ++ +    L K   +  S DLI  DPP
Sbjct: 266 NVKLNQLPEERNRWLEADVFLALRKFRDEGRSFDLIVLDPP 306


>gi|94266359|ref|ZP_01290059.1| Adenine-specific DNA methylase containing a Zn-ribbon-like [delta
           proteobacterium MLMS-1]
 gi|93453042|gb|EAT03527.1| Adenine-specific DNA methylase containing a Zn-ribbon-like [delta
           proteobacterium MLMS-1]
          Length = 725

 Score = 40.0 bits (92), Expect = 0.65,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 22/54 (40%)

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
            ++  P   I DPF G GT    A +L     G ++      + ++ +  + P 
Sbjct: 63  RNNQFPDIHIADPFMGGGTPLIEANRLGCDVTGYDINPMAWWVVSRELEHLDPQ 116


>gi|157692688|ref|YP_001487150.1| hypothetical protein BPUM_1920 [Bacillus pumilus SAFR-032]
 gi|157681446|gb|ABV62590.1| hypothetical protein BPUM_1920 [Bacillus pumilus SAFR-032]
          Length = 262

 Score = 40.0 bits (92), Expect = 0.65,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADP 47
           +I G+SI  L+K P  S D+++ DP
Sbjct: 158 VISGDSIEQLKKYPDGSFDVVYFDP 182


>gi|18312061|ref|NP_558728.1| hypothetical protein PAE0636 [Pyrobaculum aerophilum str. IM2]
 gi|18159488|gb|AAL62910.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
          Length = 278

 Score = 40.0 bits (92), Expect = 0.65,   Method: Composition-based stats.
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPP 48
           +I G+  + ++ +   S+D I  DPP
Sbjct: 180 VILGDCYAFVQTVRDSSIDFIIHDPP 205


>gi|308068607|ref|YP_003870212.1| N6-adenine-specific methylase [Paenibacillus polymyxa E681]
 gi|305857886|gb|ADM69674.1| N6-adenine-specific methylase [Paenibacillus polymyxa E681]
          Length = 213

 Score = 40.0 bits (92), Expect = 0.66,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 9/113 (7%)

Query: 225 DIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            + LD F GSG  G  A        + I+M+   ID+  + +      G  E+      R
Sbjct: 43  GVALDLFAGSGGLGIEALSRGMDKAVFIDMESKSIDVIKENLRKTGLEGQAEVFRNDAGR 102

Query: 284 TEPRVAF-NLLVERGLIQP------GQILTNAQGNISATVCADGTLISGTELG 329
               +A    L +   + P      G  L +    ++  + +D  ++   E G
Sbjct: 103 ALKVLAKRGALFDAVFLDPPYRLKHGDELMSRMAELN-LLRSDAIIVLEYESG 154


>gi|293552753|ref|ZP_06673414.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           E1039]
 gi|294620015|ref|ZP_06699380.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           E1679]
 gi|291593737|gb|EFF25246.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           E1679]
 gi|291603062|gb|EFF33253.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           E1039]
          Length = 388

 Score = 40.0 bits (92), Expect = 0.66,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 69/211 (32%), Gaps = 14/211 (6%)

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
            + L W     K        D     +        WL P  + S    N   + L   Q 
Sbjct: 94  KDYLKWLPKKEKHTKQKNKEDIHAHYDLGNDFYKLWLDPTLTYSCAYFNTPEDTLEQAQI 153

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
              +   +     K G+ +LD   G GT     AK+      G+ + ++  D+ TKRI  
Sbjct: 154 N-KVHHILDKLFIKEGETLLDIGCGWGTLMFTAAKEYNVKATGVTLSEEQYDLITKRIKE 212

Query: 268 VQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP--GQILTNAQGNISATVCADGTLISG 325
            + L +    +L   R      F+ +   G+ +    + L      +   +   GT +  
Sbjct: 213 -EHLEDKCRVLLMDYRELKGETFDHITSVGMFEHVGSENLEGYFKVVKNLLKPKGTAL-- 269

Query: 326 TELGSIHRVGAKVSGSETCNGWNFWYFEKLG 356
                IH +  +  G+   N W   Y    G
Sbjct: 270 -----IHGISRQQGGAT--NAWINKYIFPGG 293


>gi|16331305|ref|NP_442033.1| hypothetical protein slr0383 [Synechocystis sp. PCC 6803]
 gi|1001477|dbj|BAA10103.1| slr0383 [Synechocystis sp. PCC 6803]
          Length = 186

 Score = 40.0 bits (92), Expect = 0.66,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 19/31 (61%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
           +++G+ + +L  L  ++ D I+ DPPY   L
Sbjct: 92  VLRGDVLKLLPSLAGQTFDRIYFDPPYGSGL 122


>gi|88811176|ref|ZP_01126432.1| UbiE/COQ5 methyltransferase [Nitrococcus mobilis Nb-231]
 gi|88791715|gb|EAR22826.1| UbiE/COQ5 methyltransferase [Nitrococcus mobilis Nb-231]
          Length = 234

 Score = 40.0 bits (92), Expect = 0.66,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 7/82 (8%)

Query: 214 SRILVSSTKPGDIILDPFFGSG-TSGAVAKKLRR-SFIGIEMKQDYIDIATKRIASVQPL 271
            R++       + ILD   G+G ++  +AK+  R   +G+E++Q+Y+DIA +     + L
Sbjct: 39  HRLVALMPHNPERILDLACGTGISTRTIAKRYPRCHVVGVELRQEYLDIARE---KTERL 95

Query: 272 G--NIELTVLTGKRTEPRVAFN 291
           G  NIE  +   +    ++ F+
Sbjct: 96  GINNIEWVLSRAEDYYSKMPFD 117


>gi|317405497|gb|EFV85806.1| hypothetical protein HMPREF0005_01523 [Achromobacter xylosoxidans
           C54]
          Length = 188

 Score = 40.0 bits (92), Expect = 0.66,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYN 50
           +I  G+++ V E++ A   DLI  DPP+ 
Sbjct: 102 RIHVGDAMQVAERMDASRFDLILLDPPFG 130


>gi|300722565|ref|YP_003711855.1| putative methyltransferase [Xenorhabdus nematophila ATCC 19061]
 gi|297629072|emb|CBJ89657.1| putative methyltransferase with S-adenosyl-L-methionine-dependent
           methyltransferase domain [Xenorhabdus nematophila ATCC
           19061]
          Length = 710

 Score = 40.0 bits (92), Expect = 0.66,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 20/113 (17%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++I+ + +  L +   +  D+IF DPP         +     + D   
Sbjct: 584 NLQVNGLTGRQHRLIQADCLGWLAQTREQ-FDVIFIDPP--------TFSNSKRMEDTFD 634

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
              D             A +   +R+L+ +GTL    +          L+ L 
Sbjct: 635 VQRDHI-----------ALMKQLKRLLRGSGTLMFSNNKRGFKMDFVELEKLG 676


>gi|289433164|ref|YP_003463037.1| Site-specific DNA-methyltransferase (cytosine-N(4)-specific)
           [Dehalococcoides sp. GT]
 gi|288946884|gb|ADC74581.1| Site-specific DNA-methyltransferase (cytosine-N(4)-specific)
           [Dehalococcoides sp. GT]
          Length = 418

 Score = 40.0 bits (92), Expect = 0.66,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 189 CSGSERLRNKDGEKLH--PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
            +  E    ++    H  P +    +  ++L   +  G ++ DP+ G+GTS   A     
Sbjct: 13  WTFKESNVRENTHCYHDYPARMIPQIAQQLLKLYSN-GGLLFDPYCGTGTSLVEAMTYGI 71

Query: 247 SFIGIEMKQDYIDIATK 263
             +G ++      IA  
Sbjct: 72  DAVGTDINPLACLIARA 88


>gi|302880075|ref|YP_003848639.1| 50S ribosomal protein L11 methyltransferase [Gallionella
           capsiferriformans ES-2]
 gi|302582864|gb|ADL56875.1| ribosomal protein L11 methyltransferase [Gallionella
           capsiferriformans ES-2]
          Length = 297

 Score = 40.0 bits (92), Expect = 0.66,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  R L S  + G+ +LD   GSG     A KL     +G+++    +
Sbjct: 144 GTGSHPTTR---LCLRWLDSHLQGGERVLDYGCGSGILAIAAIKLGAAHAVGVDVDAQAV 200

Query: 259 DIATK 263
             +  
Sbjct: 201 TASRD 205


>gi|222100464|ref|YP_002535032.1| Ribosomal protein L11 methyltransferase [Thermotoga neapolitana DSM
           4359]
 gi|254783321|sp|B9K9N3|PRMA_THENN RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|221572854|gb|ACM23666.1| Ribosomal protein L11 methyltransferase [Thermotoga neapolitana DSM
           4359]
          Length = 264

 Score = 40.0 bits (92), Expect = 0.66,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYI 258
           G  LHPT     +    L    K GD ++D   G+G    VAKKL  S++  +++ +  +
Sbjct: 109 GTGLHPTT---QMSVFFLKKYLKKGDRVVDVGCGTGILAIVAKKLGASYVMAVDVDEQAV 165

Query: 259 DIATKRIAS 267
           ++A + +  
Sbjct: 166 EVAKENVQK 174


>gi|218904542|ref|YP_002452376.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus
           AH820]
 gi|229122934|ref|ZP_04252142.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus
           95/8201]
 gi|218538679|gb|ACK91077.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus
           AH820]
 gi|228660518|gb|EEL16150.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus
           95/8201]
          Length = 390

 Score = 40.0 bits (92), Expect = 0.66,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 78/214 (36%), Gaps = 12/214 (5%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
            + S    +K    +  A      +   +  WL    + S      + + L   Q    +
Sbjct: 96  YFKSKWNFSKQKNKDDIAHHYDIGNDFYKL-WLDETMTYSCAYFQNEQDSLTTAQ-HNKV 153

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
              +   + + GD +LD   G G    A AK+     +G+ + ++     ++RI   + L
Sbjct: 154 NHILKKLNLQKGDTLLDIGCGWGELITAAAKQYGVKAMGVTLSEEQYAKTSERIKQ-EGL 212

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLI-QPGQILTNAQGNISATVCADGTLISGTELGS 330
            ++    L   R      F+ +V  G+I   G+           T+  DG +        
Sbjct: 213 TDLVEVSLLDYRDIKNHKFDKIVSVGMIEHVGKDNITQYFETVNTLLNDGGISL------ 266

Query: 331 IHRVGAKVSGSETCNGWNFWYFEKLGELHSINTL 364
           +H + +  +G  T NGW   Y    G + ++N L
Sbjct: 267 LHCITSPANGGAT-NGWIEKYIFPGGYVPAVNEL 299


>gi|150403622|ref|YP_001330916.1| SAM-binding motif-containing protein [Methanococcus maripaludis C7]
 gi|150034652|gb|ABR66765.1| SAM (and some other nucleotide) binding motif protein
           [Methanococcus maripaludis C7]
          Length = 213

 Score = 40.0 bits (92), Expect = 0.66,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 56/157 (35%), Gaps = 18/157 (11%)

Query: 199 DGEKLHPTQKPE--------ALLSRILVSSTK--PGDIILDPFFGSGTSGAVAKKLR-RS 247
           D  K HP  K           L S  L+ +     G  ++D   GSG     AK L    
Sbjct: 11  DNLKPHPKPKAHLEQYSIEGNLASEFLLFAKDDIKGSFVIDLGCGSGRLIIGAKVLGAEH 70

Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER--GLIQPGQIL 305
            +GI++ ++ ID A + + ++    N++LTV         +      +         +++
Sbjct: 71  AVGIDIDKETIDTAKENLKNLNMNSNLDLTVDFINSDVKNIDKKYFEDNFSDFNNLKKVV 130

Query: 306 -----TNAQGNISATVCADGTLISGTELGSIHRVGAK 337
                  +Q   +  +  D     G  + +IH    +
Sbjct: 131 IQNPPFGSQKKYADRIFLDKAFEIGDVIYTIHNTATR 167


>gi|196038054|ref|ZP_03105364.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus
           NVH0597-99]
 gi|196031324|gb|EDX69921.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus
           NVH0597-99]
          Length = 390

 Score = 40.0 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 78/214 (36%), Gaps = 12/214 (5%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
            + S    +K    +  A      +   +  WL    + S      + + L   Q    +
Sbjct: 96  YFKSKWNFSKQKNKDDIAHHYDIGNDFYKL-WLDETMTYSCAYFQNEQDSLTTAQ-HNKV 153

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
              +   + + GD +LD   G G    A AK+     +G+ + ++     ++RI   + L
Sbjct: 154 NHILKKLNLQKGDTLLDIGCGWGELITAAAKQYGVKAMGVTLSEEQYAKTSERIKQ-EGL 212

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLI-QPGQILTNAQGNISATVCADGTLISGTELGS 330
            ++    L   R      F+ +V  G+I   G+           T+  DG +        
Sbjct: 213 TDLVEVSLLDYRDIKNHKFDKIVSVGMIEHVGKDNITQYFETVNTLLNDGGISL------ 266

Query: 331 IHRVGAKVSGSETCNGWNFWYFEKLGELHSINTL 364
           +H + +  +G  T NGW   Y    G + ++N L
Sbjct: 267 LHCITSPANGGAT-NGWIEKYIFPGGYVPAVNEL 299


>gi|156742688|ref|YP_001432817.1| hypothetical protein Rcas_2728 [Roseiflexus castenholzii DSM 13941]
 gi|156234016|gb|ABU58799.1| conserved hypothetical protein [Roseiflexus castenholzii DSM 13941]
          Length = 157

 Score = 40.0 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 44/141 (31%), Gaps = 23/141 (16%)

Query: 27  NSISVLEKLP--AKSVDLIFADPPYNLQL---------NGQLYRPDHSLVDAVTDSWDKF 75
           +       LP  + S+D +  DPPY   L             Y    S       + +  
Sbjct: 10  DC----RNLPYDSGSIDCVVLDPPYMEGLFRRSERHLAGAGTYAAFRSTYSNGEPTVEGP 65

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM--------LQNLNFWILN 127
              EA             RVL+P G L V         I  +         Q+L F+  +
Sbjct: 66  KYHEAVLDLYCKAGNEAHRVLRPYGILIVKCQDEVSANIQHLTHVEIIINYQSLGFYTKD 125

Query: 128 DIVWRKSNPMPNFRGRRFQNA 148
             V  + N     R ++ ++A
Sbjct: 126 LFVLVRPNKPAVSRMKKQEHA 146


>gi|296126693|ref|YP_003633945.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Brachyspira murdochii DSM 12563]
 gi|296018509|gb|ADG71746.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Brachyspira murdochii DSM 12563]
          Length = 287

 Score = 40.0 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 13/120 (10%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
            KN+  I  ++  I      II  ++   L+ +P K  D+I ++ PY + L  +    D 
Sbjct: 159 NKNAFNILGDEKFIN-----IINADA---LKYIPEKKFDIIVSNAPY-VPLKDK----DS 205

Query: 63  SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
              D   + ++   S +    F RA+L      LK NG  +    Y+  + +  +  NLN
Sbjct: 206 LQKDLDFEPFNALYSGDDGLDFYRAFLNIIDIYLKDNGAFFFEIGYNQAYSLIDICSNLN 265


>gi|195111863|ref|XP_002000496.1| GI10260 [Drosophila mojavensis]
 gi|193917090|gb|EDW15957.1| GI10260 [Drosophila mojavensis]
          Length = 276

 Score = 40.0 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 191 GSERLRNKDGEKLHPT-----QKPEALLSRILVSSTKPGD----IILDPFFGSGTSGAVA 241
             E   N D  K + T     +    +  R L     P D     ILD   GSG SG+V 
Sbjct: 10  PPEIFYNDDEAKKYSTNTRIIEIQVEMAERALELLALPDDDEPRFILDIGCGSGLSGSVL 69

Query: 242 KKLRRSFIGIEMKQDYIDIATKR 264
                 ++GI++ +  +DIA +R
Sbjct: 70  DDSDHIWVGIDISKSMLDIAVER 92


>gi|110835424|ref|YP_694283.1| hypothetical protein ABO_2563 [Alcanivorax borkumensis SK2]
 gi|110648535|emb|CAL18011.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
          Length = 210

 Score = 40.0 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 15  SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
            +FE +  +   +++S L     +  DL+F DPPY+L L
Sbjct: 113 PLFEGRLTVQCADALSWLPT-QRQPFDLVFIDPPYDLGL 150


>gi|15678751|ref|NP_275867.1| methyltransferase related protein [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|3183225|sp|O26820|TMG10_METTH RecName: Full=N(2),N(2)-dimethylguanosine tRNA methyltransferase
           Trm-G10; AltName: Full=tRNA:G10 dimethyltransferase
 gi|2621813|gb|AAB85229.1| methyltransferase related protein [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 336

 Score = 40.0 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 213 LSRILVSST--KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           L+R +V+ +  K GD ILDPF G+G     A  +    +G ++    ++   + + 
Sbjct: 175 LARCMVNLSGVKAGDRILDPFCGTGGILIEAGLMGVRVVGADIDWRMVEGTRENLQ 230



 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 3/31 (9%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ 52
           ++I+ ++  +  +L  + VD I  DPPY + 
Sbjct: 238 EVIRSDARDL--RL-DEKVDAIVTDPPYGIS 265


>gi|269794549|ref|YP_003314004.1| ubiquinone/menaquinone biosynthesis methylase [Sanguibacter
           keddieii DSM 10542]
 gi|269096734|gb|ACZ21170.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Sanguibacter keddieii DSM 10542]
          Length = 236

 Score = 40.0 bits (92), Expect = 0.68,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 12/118 (10%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSF--IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
           ILD   G G+    A+ + R    +G +     ID+A +R+    PL   +LT       
Sbjct: 43  ILD--AGCGSGPLAAELVTRGADVVGFDGSPAMIDLARRRLGEAVPLTVHDLTEPLPYDD 100

Query: 285 EPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSE 342
           E    F+ +V   ++   +        I   +   G LI+     S++   A+V  + 
Sbjct: 101 E---TFDDVVASLVLHYLEDWDAPLAEIRRVLKPGGRLIA-----SVNHPFAQVLNAP 150


>gi|196035619|ref|ZP_03103023.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus W]
 gi|195991920|gb|EDX55884.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus W]
          Length = 390

 Score = 40.0 bits (92), Expect = 0.68,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 78/214 (36%), Gaps = 12/214 (5%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
            + S    +K    +  A      +   +  WL    + S      + + L   Q    +
Sbjct: 96  YFKSKWNFSKQKNKDDIAHHYDIGNDFYKL-WLDETMTYSCAYFQNEQDSLTTAQ-HNKV 153

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
              +   + + GD +LD   G G    A AK+     +G+ + ++     ++RI   + L
Sbjct: 154 NHILKKLNLQKGDTLLDIGCGWGELITAAAKQYGVKAMGVTLSEEQYAKTSERIKQ-EGL 212

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLI-QPGQILTNAQGNISATVCADGTLISGTELGS 330
            ++    L   R      F+ +V  G+I   G+           T+  DG +        
Sbjct: 213 TDLVEVSLLDYRDIKNHKFDKIVSVGMIEHVGKDNITQYFETVNTLLNDGGISL------ 266

Query: 331 IHRVGAKVSGSETCNGWNFWYFEKLGELHSINTL 364
           +H + +  +G  T NGW   Y    G + ++N L
Sbjct: 267 LHCITSPANGGAT-NGWIEKYIFPGGYVPAVNEL 299


>gi|296108781|ref|YP_003615730.1| Methyltransferase type 11 [Methanocaldococcus infernus ME]
 gi|295433595|gb|ADG12766.1| Methyltransferase type 11 [Methanocaldococcus infernus ME]
          Length = 276

 Score = 40.0 bits (92), Expect = 0.68,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
            IN     +F+   K+I G++  V++K   +   +I  DPP    L G LY   
Sbjct: 163 KINPYSEELFKGDIKVILGDAFDVVKKFSDEEFSVIIHDPP-RFSLAGHLYSEG 215


>gi|15643837|ref|NP_228885.1| ribosomal protein L11 methyltransferase, putative [Thermotoga
           maritima MSB8]
 gi|38605526|sp|Q9X0G8|PRMA_THEMA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|4981624|gb|AAD36156.1|AE001768_5 ribosomal protein L11 methyltransferase, putative [Thermotoga
           maritima MSB8]
          Length = 264

 Score = 40.0 bits (92), Expect = 0.68,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYI 258
           G  LHPT +   +    L    K G+ +LD   G+G     AKKL     + +++ +  +
Sbjct: 109 GTGLHPTTR---MSVFFLKKYLKEGNTVLDVGCGTGILAIAAKKLGASRVVAVDVDEQAV 165

Query: 259 DIATKRIAS 267
           ++A + +  
Sbjct: 166 EVAEENVRK 174


>gi|117921663|ref|YP_870855.1| peptidase S10, serine carboxypeptidase [Shewanella sp. ANA-3]
 gi|117613995|gb|ABK49449.1| peptidase S10, serine carboxypeptidase [Shewanella sp. ANA-3]
          Length = 516

 Score = 40.0 bits (92), Expect = 0.68,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 42/134 (31%), Gaps = 8/134 (5%)

Query: 34  KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
            L  +S DL+F DP     +     R       A  D W      ++   F R WL+  +
Sbjct: 150 SLLDES-DLVFIDP-----VGTGFSRALGEKKGA--DFWGVKEDAQSIAEFMRRWLIEHK 201

Query: 94  RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           R   P               +   LQ     I  + V   S+ +     R     ++  I
Sbjct: 202 RWNSPKYLAGESYGTTRAAALVDELQGGWTDISVNGVMLISSILDFSHARYQPGNNQPYI 261

Query: 154 WASPSPKAKGYTFN 167
              P+  A  +  N
Sbjct: 262 GFLPTMAATAFYHN 275


>gi|327400010|ref|YP_004340849.1| RNA methylase [Archaeoglobus veneficus SNP6]
 gi|327315518|gb|AEA46134.1| RNA methylase [Archaeoglobus veneficus SNP6]
          Length = 316

 Score = 40.0 bits (92), Expect = 0.69,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 10/99 (10%)

Query: 195 LRNKDGEKLHPTQKP-------EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
              K  E+ HP ++P          LSR LV+      ++LDP  G+G     A  +   
Sbjct: 135 TDTKQFEERHPNRRPYFRPGVILPRLSRALVNIAIGSGLLLDPMCGTGGFLMEAGLMNLD 194

Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
           +IG+E    + +IA     +++  G     +    R  P
Sbjct: 195 YIGVE---AFEEIARGCALNLRHYGLHASVLCGDARKLP 230


>gi|258591604|emb|CBE67905.1| Modification methylase MunI (Adenine-specific methyltransferase
           MunI) (M.MunI) [NC10 bacterium 'Dutch sediment']
          Length = 247

 Score = 40.0 bits (92), Expect = 0.69,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 70/202 (34%), Gaps = 20/202 (9%)

Query: 33  EKLPAKSVDLIFADPP--YNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
              P K  D+I+ADPP  YN +L       +   +D   + +   +SF+         + 
Sbjct: 47  PDFPKKKFDIIYADPPWDYNGKLQFDRSSKNADEIDLSKNIFISSASFKYPTLKLDELMT 106

Query: 91  A-CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAH 149
                + K +  L++  +  ++ +  ++ Q   F             M +  G+   +  
Sbjct: 107 MPVHEIAKDDCLLFMWATSPHLAQAISLGQKWGFGYKTVAFVWDK--MIHNPGKYTLSNC 164

Query: 150 ETLIWAS--PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
           E  +       P+ +G       +++      M+ D +            +  EK+ PTQ
Sbjct: 165 ELCLVFKRGRIPQPRGARNIQQLIRSPRRVHSMKPDEI-----------REAIEKMFPTQ 213

Query: 208 KPEALLSRILVSSTKPGDIILD 229
               L +R+   S       LD
Sbjct: 214 DRIELFARM--KSKGWTQWGLD 233


>gi|57642070|ref|YP_184548.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus kodakarensis
           KOD1]
 gi|57160394|dbj|BAD86324.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus kodakarensis
           KOD1]
          Length = 417

 Score = 40.0 bits (92), Expect = 0.69,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 43/115 (37%), Gaps = 9/115 (7%)

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
           + T I+ S +      ++           ++ + D +  +   +   +    + ++  +K
Sbjct: 212 YATSIYWSVNRTESDVSYGDVERYWGEPFIREKLDDVTYLIHPNSFFQTNSYQAVNLVRK 271

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
              L+          G+ +LD + G GT G    K      GIE+    +++A K
Sbjct: 272 VAELV---------EGEKVLDLYSGVGTFGIYLAKRGFKVEGIEINPFAVEMAKK 317


>gi|30248665|ref|NP_840735.1| ribosomal protein L11 methyltransferase [Nitrosomonas europaea ATCC
           19718]
 gi|38605217|sp|Q81ZZ9|PRMA_NITEU RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|30180260|emb|CAD84565.1| prmA; putative ribosomal protein L11 methyltransferase
           [Nitrosomonas europaea ATCC 19718]
          Length = 313

 Score = 40.0 bits (92), Expect = 0.69,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYI 258
           G   HPT +   L    L    +PGD +LD   GSG     A K       G+++  + I
Sbjct: 144 GTGSHPTTR---LCLTWLDQFLQPGDSVLDYGCGSGILAIAALKFGADRVTGMDIDPNAI 200

Query: 259 DIATK 263
             +  
Sbjct: 201 TASLD 205


>gi|47568418|ref|ZP_00239119.1| glycosyl transferase, group 2 family protein, putative [Bacillus
           cereus G9241]
 gi|47554966|gb|EAL13316.1| glycosyl transferase, group 2 family protein, putative [Bacillus
           cereus G9241]
          Length = 229

 Score = 40.0 bits (92), Expect = 0.69,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 56/160 (35%), Gaps = 24/160 (15%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L  +  E  +    P  LL  I     +    +LD     G  GA  K+      GIE  
Sbjct: 8   LYEEKSEHYYNAANP-NLLKHIKKEWKE----VLDIGCSGGALGAAIKENGTRVSGIEAF 62

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNA---QG 310
            +  + A +R+  V  LG+IE   L  +  +   V F  ++E         L +      
Sbjct: 63  PEAAEKAKERLDHVI-LGDIEKINLPYEEEQFDCVIFGDVLEH--------LFDPWAVIE 113

Query: 311 NISATVCADGTLISGTELGSIHRVGAKVSGSETCNG-WNF 349
            +   +  +G +++     SI  V      +    G W +
Sbjct: 114 KVKPYIKENGVILA-----SIPNVAHISVLAPLLAGNWTY 148


>gi|304413550|ref|ZP_07395023.1| 23S rRNA m(2)G2445 methyltransferase [Candidatus Regiella
           insecticola LSR1]
 gi|304284393|gb|EFL92786.1| 23S rRNA m(2)G2445 methyltransferase [Candidatus Regiella
           insecticola LSR1]
          Length = 771

 Score = 40.0 bits (92), Expect = 0.70,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 10  NENQNSIFEWKDKIIKGNSISVL-EKL--PAKSVDLIFADPP 48
           N   N +   + ++I+ +  + L ++L  P    D+IF DPP
Sbjct: 638 NLRTNGLTGRQHRLIQADCFAWLDQRLDHPTAQFDVIFIDPP 679


>gi|113969233|ref|YP_733026.1| peptidase S10, serine carboxypeptidase [Shewanella sp. MR-4]
 gi|113883917|gb|ABI37969.1| peptidase S10, serine carboxypeptidase [Shewanella sp. MR-4]
          Length = 516

 Score = 40.0 bits (92), Expect = 0.70,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 42/134 (31%), Gaps = 8/134 (5%)

Query: 34  KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
            L  +S DL+F DP     +     R       A  D W      ++   F R WL+  +
Sbjct: 150 SLLDES-DLVFIDP-----VGTGFSRALGEKKGA--DFWGVKEDAQSIAEFMRRWLIEHK 201

Query: 94  RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           R   P               +   LQ     I  + V   S+ +     R     ++  I
Sbjct: 202 RWNSPKYLAGESYGTTRAAALVDELQGGWTDISVNGVMLISSILDFSHARYQPGNNQPYI 261

Query: 154 WASPSPKAKGYTFN 167
              P+  A  +  N
Sbjct: 262 GFLPTMAATAFYHN 275


>gi|255318900|ref|ZP_05360126.1| methyltransferase type 12 [Acinetobacter radioresistens SK82]
 gi|262378845|ref|ZP_06072002.1| methyltransferase [Acinetobacter radioresistens SH164]
 gi|255304156|gb|EET83347.1| methyltransferase type 12 [Acinetobacter radioresistens SK82]
 gi|262300130|gb|EEY88042.1| methyltransferase [Acinetobacter radioresistens SH164]
          Length = 222

 Score = 40.0 bits (92), Expect = 0.70,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 45/140 (32%), Gaps = 22/140 (15%)

Query: 184 WLIPICSGS--------ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGS 234
           WLIP    +         R+ N     +       A+   +L       D ++LD   GS
Sbjct: 40  WLIPPVFPTGRLDDEVIRRIWNDTPYWIFCWASGLAMAQWLLAEPQHVKDKVVLDFGAGS 99

Query: 235 GTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
           G     AK    +  I  ++ Q  + +A  R      L ++EL  L       +V     
Sbjct: 100 GVVAIAAKMAGAKQVICCDIDQ--VSLAACR--ENAKLNDVELEYLDDLYKAEQVD---- 151

Query: 294 VERGLIQPGQILTNAQGNIS 313
               ++    +L +      
Sbjct: 152 ----VLLAADVLYDQSNRFF 167


>gi|238754334|ref|ZP_04615690.1| hypothetical protein yruck0001_17360 [Yersinia ruckeri ATCC 29473]
 gi|238707367|gb|EEP99728.1| hypothetical protein yruck0001_17360 [Yersinia ruckeri ATCC 29473]
          Length = 706

 Score = 40.0 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
           N   N +   + ++I+ + +S L     +  D+IF DPP
Sbjct: 580 NLRVNGLTGQQHRLIQADCLSWLSN-TEEQFDVIFIDPP 617


>gi|83647643|ref|YP_436078.1| 23S rRNA m(2)G2445 methyltransferase [Hahella chejuensis KCTC 2396]
 gi|123531558|sp|Q2SCH1|RLML_HAHCH RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|83635686|gb|ABC31653.1| predicted SAM-dependent methyltransferase [Hahella chejuensis KCTC
           2396]
          Length = 717

 Score = 40.0 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 20/91 (21%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            + ++ N +  L+     S DLIF DPP         +     + D +    D     E 
Sbjct: 607 HRFVRANVLDWLKA-EHNSYDLIFLDPP--------TFSNSKKMEDVLDIQRDHAGLIED 657

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
                      C R+L P G L    +Y   
Sbjct: 658 -----------CMRLLAPGGVLIFSCNYRRF 677


>gi|313143402|ref|ZP_07805595.1| ulcer associated adenine specific DNA methyltransferase
           [Helicobacter cinaedi CCUG 18818]
 gi|313128433|gb|EFR46050.1| ulcer associated adenine specific DNA methyltransferase
           [Helicobacter cinaedi CCUG 18818]
          Length = 390

 Score = 39.6 bits (91), Expect = 0.72,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYN 50
           K   G+S+ +L+    +S+D+++ DPPYN
Sbjct: 247 KCFCGDSVKLLQSFK-ESIDILYLDPPYN 274


>gi|308159924|gb|EFO62439.1| RNA methylase, putative [Giardia lamblia P15]
          Length = 496

 Score = 39.6 bits (91), Expect = 0.72,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 205 PTQKPEAL-LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           PT     L      V+  KPGDI+ DPF G+ +    A       IG ++ 
Sbjct: 244 PTSMDHELAFIMCEVAGVKPGDIVCDPFAGTCSILISAASYGCITIGGDLN 294


>gi|261403565|ref|YP_003247789.1| putative RNA methylase [Methanocaldococcus vulcanius M7]
 gi|261370558|gb|ACX73307.1| putative RNA methylase [Methanocaldococcus vulcanius M7]
          Length = 351

 Score = 39.6 bits (91), Expect = 0.72,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 1/95 (1%)

Query: 203 LHP-TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
            HP    P+   + + ++  K  DIILDPF G+G     A  +    IG ++        
Sbjct: 184 FHPGCMLPKLARAMVNLARVKENDIILDPFCGTGGFLIEAGLIGAKLIGCDIDWRMASGT 243

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
              +     L  I        +   ++  N+ +E+
Sbjct: 244 KINLEEYNLLDKIIKIERLDAKHVDKLLKNVGIEK 278


>gi|198429457|ref|XP_002129806.1| PREDICTED: similar to MGC82375 protein [Ciona intestinalis]
          Length = 281

 Score = 39.6 bits (91), Expect = 0.72,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 211 ALLSRILVSSTKPGD---IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            +  R +     P D   ++LD   GSG SG    +    +IG+++    +D+A +R
Sbjct: 36  EMSERAIELLNLPEDTPCMLLDVGCGSGLSGECLTEQGHIWIGMDISSAMLDVARER 92


>gi|164687720|ref|ZP_02211748.1| hypothetical protein CLOBAR_01362 [Clostridium bartlettii DSM
           16795]
 gi|164603494|gb|EDQ96959.1| hypothetical protein CLOBAR_01362 [Clostridium bartlettii DSM
           16795]
          Length = 453

 Score = 39.6 bits (91), Expect = 0.72,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 206 TQKPEALLSRILVSSTKPGDIIL-DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           T   E L S          D +L D + G+GT G V  +  R   GIE+ ++ ++ A +
Sbjct: 289 TLGAEKLYSMAREFVGDYKDKVLYDLYSGTGTIGQVLSQKARKVYGIEIVEEAVEAANE 347


>gi|289523746|ref|ZP_06440600.1| cyclin-dependent kinase inhibitor family protein [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503438|gb|EFD24602.1| cyclin-dependent kinase inhibitor family protein [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 937

 Score = 39.6 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 45/164 (27%), Gaps = 30/164 (18%)

Query: 34  KLP--AKSVDLIFADPPY--NLQLN--------------GQLY--------RPDHSLVDA 67
            LP      D +  DPPY  N+  +              G LY         P    + A
Sbjct: 531 SLPYLDNYFDAVITDPPYYDNVPYSYLSDFFYVWLKRTVGDLYPELFATPLTPKSEEIVA 590

Query: 68  VTDSWDKFSSFEA-YDAFTRAWLLACRRVLKPNGTLWVIGSYHN---IFRIGTMLQNLNF 123
            +     F   +  ++           RVLKP G   ++ ++ +      I   L N   
Sbjct: 591 YSHKEGGFEGGKKFFEDMISKAFREIYRVLKPEGIAVIVFAHKSTDAWETIINALLNSGL 650

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
           ++                      A    +      ++K   FN
Sbjct: 651 YLTASWPINTEMKARLRAKESAAMASSIYMVCRKRTESKTAYFN 694



 Score = 38.0 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 47/136 (34%), Gaps = 18/136 (13%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDW--LIPICSGSERLRNKDGEKLHPTQKPE 210
           IW +  P A      Y AL    +D + R +    I   S  E   NK+           
Sbjct: 36  IWWARRPLASSRASVYAALTPEPKDEEERLNRSQFIHDLSKWENSLNKN----------- 84

Query: 211 ALLSR----ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
            L+ R    IL ++      +LDPF G G     A +L       ++    + I    + 
Sbjct: 85  -LVERAREEILRANGGKPPKVLDPFAGGGAIPLEALRLGCDTYASDLNPVAVLIEKCTLE 143

Query: 267 SVQPLGNIELTVLTGK 282
             Q  G  E    +G+
Sbjct: 144 YPQKYGKTENNPYSGQ 159


>gi|194334013|ref|YP_002015873.1| hypothetical protein Paes_1197 [Prosthecochloris aestuarii DSM 271]
 gi|194311831|gb|ACF46226.1| conserved hypothetical protein [Prosthecochloris aestuarii DSM 271]
          Length = 394

 Score = 39.6 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 2/27 (7%)

Query: 24  IKGNSISVLEKL--PAKSVDLIFADPP 48
           ++G++  V++ L    KS DL+  DPP
Sbjct: 272 LQGDAFDVMKNLIKEGKSYDLVILDPP 298


>gi|328553098|gb|AEB23590.1| methyltransferase [Bacillus amyloliquefaciens TA208]
 gi|328912130|gb|AEB63726.1| putative methyltransferase [Bacillus amyloliquefaciens LL3]
          Length = 256

 Score = 39.6 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADP 47
           + ++   +    L  LP  SVD+I+ DP
Sbjct: 155 RIQVKHADCSDYLRNLPDSSVDVIYFDP 182


>gi|308173976|ref|YP_003920681.1| methyltransferase [Bacillus amyloliquefaciens DSM 7]
 gi|307606840|emb|CBI43211.1| putative methyltransferase [Bacillus amyloliquefaciens DSM 7]
          Length = 256

 Score = 39.6 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADP 47
           + ++   +    L  LP  SVD+I+ DP
Sbjct: 155 RIQVKHADCSDYLRNLPDSSVDVIYFDP 182


>gi|206900806|ref|YP_002250671.1| ribosomal protein L11 methyltransferase [Dictyoglomus thermophilum
           H-6-12]
 gi|226710073|sp|B5YDR3|PRMA_DICT6 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|206739909|gb|ACI18967.1| ribosomal protein L11 methyltransferase [Dictyoglomus thermophilum
           H-6-12]
          Length = 301

 Score = 39.6 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 49/132 (37%), Gaps = 10/132 (7%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT     +   +L    K G  +LD   GSG    VAKKL      GI++ +  +
Sbjct: 145 GSGSHPTTI---MCIEMLQKYLKEGMDVLDVGTGSGILSIVAKKLGAGKVKGIDIDKKAV 201

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           ++A +         N+EL       T        +V   LI   +I+      +   +  
Sbjct: 202 EVAKE----NAKRNNVELEFQQANLTIGIEDKYDIVVANLI--AEIILKLNSEVKRVLKE 255

Query: 319 DGTLISGTELGS 330
            G  I+   +G 
Sbjct: 256 SGVYITSGIIGE 267


>gi|17231124|ref|NP_487672.1| site-specific DNA-methyltransferase (cytosine-specific) [Nostoc sp.
           PCC 7120]
 gi|61228218|sp|P0A461|MTA1_ANASP RecName: Full=Modification methylase AvaI; Short=M.AvaI; AltName:
           Full=N(4) cytosine-specific methyltransferase AvaI
 gi|61228220|sp|P0A462|MTA1_ANAVA RecName: Full=Modification methylase AvaI; Short=M.AvaI; AltName:
           Full=N(4)- cytosine-specific methyltransferase AvaI
 gi|1523803|emb|CAA66984.1| methylase [Anabaena variabilis]
 gi|17132765|dbj|BAB75331.1| site-specific DNA-methyltransferase (cytosine-specific) [Nostoc sp.
           PCC 7120]
          Length = 482

 Score = 39.6 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 6/36 (16%), Positives = 13/36 (36%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
           +   + + +L +      D I   PPY  + +    
Sbjct: 281 LFNASCLKILPEFEQDFYDCIITSPPYCNRYDYTRT 316



 Score = 37.7 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 15/89 (16%)

Query: 208 KPEALLSRILVSSTKPG-DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
               L+++++    K   + ILDPF G+GT             GIE+         + I 
Sbjct: 76  FSVDLVNQLIFEYEKKSFERILDPFAGAGTMLFACSDAGIQADGIEVLP-----IGQEII 130

Query: 267 SVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            V+ +          +R   R  F  L+E
Sbjct: 131 EVRKI---------IQRQFRREDFLRLIE 150


>gi|332884104|gb|EGK04381.1| hypothetical protein HMPREF9456_03427 [Dysgonomonas mossii DSM
           22836]
          Length = 216

 Score = 39.6 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 5/46 (10%)

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSST-----KPGDIILDPFFGS 234
           R   +  + +HPTQKP  L+ R+L         KP  ++LD F GS
Sbjct: 170 RQIGERYKAIHPTQKPPRLIERLLALVCKIEPNKPKPLVLDTFRGS 215


>gi|332982517|ref|YP_004463958.1| type 11 methyltransferase [Mahella australiensis 50-1 BON]
 gi|332700195|gb|AEE97136.1| Methyltransferase type 11 [Mahella australiensis 50-1 BON]
          Length = 248

 Score = 39.6 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
            ++ S       +LD   G+GT      K+  + IGI++ +  IDIA  
Sbjct: 23  DLVQSVFDKSASVLDVACGTGTYTLAMAKMGYNMIGIDISRAMIDIAMA 71


>gi|290956273|ref|YP_003487455.1| oxidoreductase [Streptomyces scabiei 87.22]
 gi|260645799|emb|CBG68890.1| putative oxidoreductase [Streptomyces scabiei 87.22]
          Length = 604

 Score = 39.6 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 47/130 (36%), Gaps = 12/130 (9%)

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFN 291
            G+G +  +A +  R  +GI++ +     A   + +          +   +R E    F 
Sbjct: 27  MGTGIAEVLA-RAGREVVGIDISEAAASRAVTGLEAATERAVARGRLTEQERGEALARFR 85

Query: 292 LLVE-------RGLIQPGQILTNAQ----GNISATVCADGTLISGTELGSIHRVGAKVSG 340
              +         +I+        +      + A V  D  L +GT   S+ R+ A+ + 
Sbjct: 86  TFTDLRAAADADLVIEVVPESYEIKQQVFRELDAIVRPDAVLATGTNALSVTRLAAESAR 145

Query: 341 SETCNGWNFW 350
            E   G +F+
Sbjct: 146 PERVLGLHFF 155


>gi|257440234|ref|ZP_05615989.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Faecalibacterium prausnitzii A2-165]
 gi|257197268|gb|EEU95552.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Faecalibacterium prausnitzii A2-165]
          Length = 283

 Score = 39.6 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 8/115 (6%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           ++G+  +  + LP   +DLI ++PPY         +P+ +   A+        + E    
Sbjct: 168 VQGDLFTYWQTLPEGQLDLIVSNPPYLTAAEMGALQPEVAQEPAMA-----LEAGEDGLV 222

Query: 84  FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
           F RA     ++VL+P G L +   +     +  +L    +    DIV RK     
Sbjct: 223 FYRAIAEHYQKVLRPGGALALEIGWQQREAVTALLAANGWT---DIVCRKDFGGN 274


>gi|52840278|ref|YP_094077.1| 23S rRNA m(2)G2445 methyltransferase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|81378405|sp|Q5ZZI8|RLML_LEGPH RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|52627389|gb|AAU26130.1| hypothetical protein lpg0022 [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 707

 Score = 39.6 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 21/113 (18%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N I   K + ++ +    ++    K  D+IF DPP         +     + D + 
Sbjct: 582 NFRLNDINLSKHQFLQYDCKEWMKTTRDK-FDVIFLDPP--------SFSNSKRMSDILD 632

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
              D  S            +    R+L P+G L+   +    F++  ML+   
Sbjct: 633 IQRDHVS-----------LINMAMRLLNPDGVLY-FSTNLRQFKLEPMLKEKY 673


>gi|85859506|ref|YP_461708.1| adenine-specific DNA methylase [Syntrophus aciditrophicus SB]
 gi|85722597|gb|ABC77540.1| adenine-specific DNA methylase containing a zn-ribbon [Syntrophus
           aciditrophicus SB]
          Length = 1026

 Score = 39.6 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 47/144 (32%), Gaps = 36/144 (25%)

Query: 18  EWKD--KIIKGNSISVLEKLP-AKSV-DLIFADPPY--NLQLN----------------- 54
           ++++  K+++G++      LP    + D +  DPPY  N   +                 
Sbjct: 582 QFRNPVKVVRGSAAE----LPYDNGIFDAVITDPPYYDNESYSELSDVCYVWLRPTIGFL 637

Query: 55  ------GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
                 GQL       V A      K  +   Y+      L    RV KP G L V+ ++
Sbjct: 638 YPEHFAGQLTPKKKECVAAAYRQGGKQQARNYYEDTLFQSLQEAHRVTKPGGILIVVYAH 697

Query: 109 HN---IFRIGTMLQNLNFWILNDI 129
                   +   L+   + +    
Sbjct: 698 KTTLGWATLVDALRRAGYEVAEAW 721


>gi|54292987|ref|YP_125402.1| 23S rRNA m(2)G2445 methyltransferase [Legionella pneumophila str.
           Lens]
 gi|81369542|sp|Q5X0J6|RLML_LEGPL RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|53752819|emb|CAH14253.1| hypothetical protein lpl0023 [Legionella pneumophila str. Lens]
          Length = 707

 Score = 39.6 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 21/113 (18%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N I   K + ++ +    ++    K  D+IF DPP         +     + D + 
Sbjct: 582 NFRLNDINLSKHQFLQYDCKEWMKTTRDK-FDVIFLDPP--------SFSNSKRMSDILD 632

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
              D  S            +    R+L P+G L+   +    F++  ML+   
Sbjct: 633 IQRDHVS-----------LINMAMRLLNPDGVLY-FSTNLRQFKLEPMLKEKY 673


>gi|54296005|ref|YP_122374.1| 23S rRNA m(2)G2445 methyltransferase [Legionella pneumophila str.
           Paris]
 gi|81371465|sp|Q5X969|RLML_LEGPA RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|53749790|emb|CAH11170.1| hypothetical protein lpp0022 [Legionella pneumophila str. Paris]
          Length = 707

 Score = 39.6 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 21/113 (18%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N I   K + ++ +    ++    K  D+IF DPP         +     + D + 
Sbjct: 582 NFRLNDINLSKHQFLQYDCKEWMKTTRDK-FDVIFLDPP--------SFSNSKRMSDILD 632

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
              D  S            +    R+L P+G L+   +    F++  ML+   
Sbjct: 633 IQRDHVS-----------LINMAMRLLNPDGVLY-FSTNLRQFKLEPMLKEKY 673


>gi|87307271|ref|ZP_01089416.1| hypothetical protein DSM3645_17150 [Blastopirellula marina DSM
           3645]
 gi|87290011|gb|EAQ81900.1| hypothetical protein DSM3645_17150 [Blastopirellula marina DSM
           3645]
          Length = 49

 Score = 39.6 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIE 252
           +DPF GSG++   A++   S +G+E
Sbjct: 1   MDPFAGSGSTLIGARRCGFSSVGVE 25


>gi|269120866|ref|YP_003309043.1| RNA methyltransferase, TrmA family [Sebaldella termitidis ATCC
           33386]
 gi|268614744|gb|ACZ09112.1| RNA methyltransferase, TrmA family [Sebaldella termitidis ATCC
           33386]
          Length = 456

 Score = 39.6 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 212 LLSRILVSSTKPGD-IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           L S++L       D II D F G+GT G +  K  R   GIE+ ++ ++ A +
Sbjct: 296 LYSKVLEFLPDTEDKIIFDLFSGTGTIGQIVSKNARYVYGIELVEEAVEKANE 348


>gi|269926088|ref|YP_003322711.1| ribosomal protein L11 methyltransferase [Thermobaculum terrenum
           ATCC BAA-798]
 gi|269789748|gb|ACZ41889.1| ribosomal protein L11 methyltransferase [Thermobaculum terrenum
           ATCC BAA-798]
          Length = 315

 Score = 39.6 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 62/179 (34%), Gaps = 15/179 (8%)

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD-----GEKLHPTQKPE 210
           SP    + +  +Y  + A  E + ++  WL      +E +   D     G  LHPT +  
Sbjct: 109 SPEDWMEAWKAHYPIIHAG-ERLVIKPAWLAYSPQNNEIVIELDPGMAFGTGLHPTTR-- 165

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQ 269
            L    +        + LD   GSG   A   KL  +  + +++    +  A    ++V+
Sbjct: 166 -LCLDAIERYMHEESVCLDLGTGSGILAAAMAKLGAKQVLAVDIDPVAVSAAK---STVE 221

Query: 270 PLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTEL 328
             G  +   +     E   A    +   +I    ++          +  +G L+    L
Sbjct: 222 RNGISDKVQVLEGSIEKATAQYDFIAANII--ASVIIELSPRFQEIMSDEGYLVVSGIL 278


>gi|118497580|ref|YP_898630.1| 50S ribosomal protein L11, methyltransferase [Francisella
           tularensis subsp. novicida U112]
 gi|195536277|ref|ZP_03079284.1| ribosomal protein L11 methyltransferase [Francisella tularensis
           subsp. novicida FTE]
 gi|118423486|gb|ABK89876.1| 50S ribosomal protein L11, methyltransferase [Francisella novicida
           U112]
 gi|194372754|gb|EDX27465.1| ribosomal protein L11 methyltransferase [Francisella tularensis
           subsp. novicida FTE]
          Length = 281

 Score = 39.6 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 74/224 (33%), Gaps = 29/224 (12%)

Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
           Y N   I T++ N+     N I                  ++E +           + ++
Sbjct: 47  YENHHDIATIIANIKQKFENIIESEI--------------SYEII---KDQQWEAAWLYD 89

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSSTKPGD 225
           Y+ ++  N ++ +  +W  P           D          E   +    L        
Sbjct: 90  YEPIEIGN-NIVVYPNWRQPPQDNKHTYIIVDPSIAFGCGNHETTKMCLEWLEQHVSKDT 148

Query: 226 IILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
            +LD   G+G     A KL   +  GI++  + I+ +   I + Q     + T  +    
Sbjct: 149 RVLDYGCGTGVLAIGAVKLGAEYAEGIDIDPNSIESS---IKNAQENDVTDKTHFSDN-- 203

Query: 285 EPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTEL 328
            P   F+L+V         +L +  GNI+ ++   G L     +
Sbjct: 204 PPTQQFDLVVANIF---SNVLISLVGNITTSLKKGGRLALSGII 244


>gi|49478214|ref|YP_037508.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|49329770|gb|AAT60416.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 390

 Score = 39.6 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 78/214 (36%), Gaps = 12/214 (5%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
            + S    +K    +  A      +   +  WL    + S      + + L   Q    +
Sbjct: 96  YFKSKWNFSKQKNKDDIAHHYDIGNDFYKL-WLDETMTYSCAYFQNEQDSLTTAQ-HNKV 153

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
              +   + + GD +LD   G G    A AK+     +G+ + ++     ++RI   + L
Sbjct: 154 NHILKKLNLQKGDTLLDIGCGWGELITAAAKQYGVKAMGVTLSEEQYAKTSERIKQ-EGL 212

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLI-QPGQILTNAQGNISATVCADGTLISGTELGS 330
            ++    L   R      F+ +V  G+I   G+           T+  DG +        
Sbjct: 213 TDLVEVSLLDYRDIKNHKFDKIVSVGMIEHVGKDNITQYFETVNTLLNDGGISL------ 266

Query: 331 IHRVGAKVSGSETCNGWNFWYFEKLGELHSINTL 364
           +H + +  +G  T NGW   Y    G + ++N L
Sbjct: 267 LHCITSPANGGAT-NGWIEKYIFPGGYVPAVNEL 299


>gi|257898516|ref|ZP_05678169.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           Com15]
 gi|257836428|gb|EEV61502.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           Com15]
          Length = 388

 Score = 39.6 bits (91), Expect = 0.75,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 69/211 (32%), Gaps = 14/211 (6%)

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
            + L W     K        D     +        WL P  + S    N   + L   Q 
Sbjct: 94  KDYLKWLPKKEKHTKQKNKEDIHAHYDLGNDFYKLWLDPTLTYSCAYFNTPEDTLEQAQI 153

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
              +   +     K G+ +LD   G GT     AK+      GI + ++  D+ TK+I  
Sbjct: 154 N-KVHHILDKLFIKEGETLLDIGCGWGTLMFTAAKEYNVKATGITLSEEQYDLITKKIKE 212

Query: 268 VQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP--GQILTNAQGNISATVCADGTLISG 325
            + L +    +L   R      F+ +   G+ +    + L      +   +   GT +  
Sbjct: 213 -EHLEDKCRVLLMDYRELKGETFDHITSVGMFEHVGSENLEGYFKVVKDLLKPKGTAL-- 269

Query: 326 TELGSIHRVGAKVSGSETCNGWNFWYFEKLG 356
                IH +  +  G+   N W   Y    G
Sbjct: 270 -----IHGISRQQGGAT--NAWINKYIFPGG 293


>gi|157325361|ref|YP_001468781.1| gp77 [Listeria phage B054]
 gi|66733366|gb|AAY53182.1| gp77 [Listeria phage B054]
          Length = 445

 Score = 39.6 bits (91), Expect = 0.75,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 26/136 (19%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           I  NS++  + +   S+DL+F  PPY               ++  +D+ +  S+ E YD 
Sbjct: 279 ITDNSLNADKHIKDNSMDLLFTCPPYF-------------DLEVYSDNKEDISNME-YDE 324

Query: 84  FTRAWL----LACRRVLKPNGTLWVIGSYHNIFRI--------GTMLQNLNFWILNDIVW 131
           F + +         ++      + VI    +             ++ +    +  ND++ 
Sbjct: 325 FIKVYSEILDKGANKLKDNRFAIVVISDVRDKAGFYRDLTGLTKSIFEKNGIYFYNDLIL 384

Query: 132 RKSNPMPNFRGRRFQN 147
             S      R RR   
Sbjct: 385 LNSLGSGALRARRNMR 400



 Score = 36.9 bits (84), Expect = 5.9,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
             L  R    + K    I DPF G    G VAK L   + GI+++++ ++
Sbjct: 215 CELAYR--WFTPKESAKIYDPFAGGSVRGIVAKVLGHEYTGIDLRKEQVE 262


>gi|86160495|ref|YP_467280.1| hypothetical protein Adeh_4079 [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85777006|gb|ABC83843.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 252

 Score = 39.6 bits (91), Expect = 0.75,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
              ++R L++ T    ++ DPF G GT  AVA       +G+E+ 
Sbjct: 171 CEAVARFLLAETGCRTVV-DPFCGLGTMLAVANAHGLDAVGVELS 214


>gi|332372630|gb|AEE61457.1| unknown [Dendroctonus ponderosae]
          Length = 272

 Score = 39.6 bits (91), Expect = 0.76,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 8/84 (9%)

Query: 189 CSGSERLRNKDGEKLHP-----TQKPEALLSRILVSSTKPGD---IILDPFFGSGTSGAV 240
            +  E   N+D  K +       +  E +  R +     P     ++LD   GSG SG++
Sbjct: 7   IAPPEIFYNEDEAKKYTQNSRIMEIQEQMSERAIELLLLPEGAPSLVLDIGCGSGISGSI 66

Query: 241 AKKLRRSFIGIEMKQDYIDIATKR 264
            ++    ++G+++    +D+A +R
Sbjct: 67  LEENGHYWVGMDISSAMLDVAVER 90


>gi|187734834|ref|YP_001876946.1| hypothetical protein Amuc_0325 [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187424886|gb|ACD04165.1| conserved hypothetical protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 431

 Score = 39.6 bits (91), Expect = 0.76,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPY 49
             G+    ++++P + VDLI   PPY
Sbjct: 243 YLGDVRKNIQQVPDREVDLIITSPPY 268



 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 27/101 (26%), Gaps = 16/101 (15%)

Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
                K    T  Y ++   +++  +      P   G  +                  + 
Sbjct: 1   MYKDYKFIDCTEKYHSVMQFDKNKNVFVHRWYPFVEGYSK----------------EFIE 44

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
            IL          L+PF GSGT+    +         E+  
Sbjct: 45  DILGELPFAPTCALEPFCGSGTTPVELQNHGIKCYSFEVSP 85


>gi|154246921|ref|YP_001417879.1| hypothetical protein Xaut_2991 [Xanthobacter autotrophicus Py2]
 gi|154161006|gb|ABS68222.1| protein of unknown function DUF1156 [Xanthobacter autotrophicus
           Py2]
          Length = 933

 Score = 39.6 bits (91), Expect = 0.76,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 5/79 (6%)

Query: 209 PEALLSR----ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            E +L R    I  S       + DPF G G+    A++L     G ++    + I    
Sbjct: 98  NEEVLERARAEIRKSCGGELPPVYDPFSGGGSIPLEAQRLGLPAYGSDLNPVAVMIGKA- 156

Query: 265 IASVQPLGNIELTVLTGKR 283
           +  + P    +  +  G +
Sbjct: 157 MIEIPPKFKDKEPIHPGAK 175


>gi|57505420|ref|ZP_00371348.1| cyclopropane fatty acid synthase (cfa) [Campylobacter upsaliensis
           RM3195]
 gi|57016245|gb|EAL53031.1| cyclopropane fatty acid synthase (cfa) [Campylobacter upsaliensis
           RM3195]
          Length = 387

 Score = 39.6 bits (91), Expect = 0.76,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 69/188 (36%), Gaps = 16/188 (8%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG-TSGAVAK 242
           WL    S S        + L+  Q    +   +     KP + +LD   G G  S   A+
Sbjct: 123 WLDDTMSYSCAYFKTSSDTLYEAQIN-KIEHTLKKLDLKPNEKLLDIGCGWGWLSIMAAQ 181

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLI-QP 301
           K     +G+ + ++    A +R+  ++    +E+ +   +  E    F+ +V  G+    
Sbjct: 182 KYGVKVVGVTISEEQCKKAQERVRELKLEDRVEIRLQNYQDLEFENYFDKVVSVGMFEHV 241

Query: 302 GQILTNAQGNISATV-CADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
           G+         +  V    G+++       +H + A   G    N W   Y    G L S
Sbjct: 242 GKENLGLYFMKAKQVLKPGGSML-------LHSILAMFEGKT--NAWIDKYIFPGGYLPS 292

Query: 361 INTLRILV 368
              LR +V
Sbjct: 293 ---LREVV 297


>gi|227551500|ref|ZP_03981549.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           TX1330]
 gi|257884572|ref|ZP_05664225.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           1,231,501]
 gi|257895890|ref|ZP_05675543.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           Com12]
 gi|293377070|ref|ZP_06623280.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           PC4.1]
 gi|293570936|ref|ZP_06681981.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           E980]
 gi|227179360|gb|EEI60332.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           TX1330]
 gi|257820410|gb|EEV47558.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           1,231,501]
 gi|257832455|gb|EEV58876.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           Com12]
 gi|291608999|gb|EFF38276.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           E980]
 gi|292644286|gb|EFF62386.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           PC4.1]
          Length = 388

 Score = 39.6 bits (91), Expect = 0.76,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 69/211 (32%), Gaps = 14/211 (6%)

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
            + L W     K        D     +        WL P  + S    N   + L   Q 
Sbjct: 94  KDYLKWLPKKEKHTKQKNKEDIHAHYDLGNDFYKLWLDPTLTYSCAYFNTPEDTLEQAQI 153

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
              +   +     K G+ +LD   G GT     AK+      GI + ++  D+ TK+I  
Sbjct: 154 N-KVHHILDKLFIKEGETLLDIGCGWGTLMFTAAKEYNVKATGITLSEEQYDLITKKIKE 212

Query: 268 VQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP--GQILTNAQGNISATVCADGTLISG 325
            + L +    +L   R      F+ +   G+ +    + L      +   +   GT +  
Sbjct: 213 -EHLEDKCRVLLMDYRELKGETFDHITSVGMFEHVGSENLEGYFKVVKDLLKPKGTAL-- 269

Query: 326 TELGSIHRVGAKVSGSETCNGWNFWYFEKLG 356
                IH +  +  G+   N W   Y    G
Sbjct: 270 -----IHGISRQQGGAT--NAWINKYIFPGG 293


>gi|28895815|ref|NP_802165.1| DNA N-4 cytosine methyltransferase [Streptococcus pyogenes SSI-1]
 gi|28811064|dbj|BAC63998.1| putative DNA N-4 cytosine methyltransferase [Streptococcus pyogenes
           SSI-1]
          Length = 106

 Score = 39.6 bits (91), Expect = 0.76,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 10/76 (13%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
             + S +L+  DPP +L+  GQ     +S++ A     DK    E +          C R
Sbjct: 3   FESNSFNLVVFDPP-HLKYVGQ-----NSIMKAQYGQLDK----ENWKEDISKGFEECMR 52

Query: 95  VLKPNGTLWVIGSYHN 110
           VLK  GTL    S   
Sbjct: 53  VLKVGGTLVFKWSDCQ 68


>gi|314055178|ref|YP_004063516.1| site-specific DNA-methyltransferase [Ostreococcus tauri virus 2]
 gi|313575069|emb|CBI70082.1| site-specific DNA-methyltransferase [Ostreococcus tauri virus 2]
          Length = 341

 Score = 39.6 bits (91), Expect = 0.77,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
           ++   L +LP   VDLI+ DPPYN    G  Y
Sbjct: 201 DACDFLRELP--KVDLIYLDPPYNQHPYGSNY 230


>gi|303289497|ref|XP_003064036.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454352|gb|EEH51658.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 446

 Score = 39.6 bits (91), Expect = 0.78,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 69/230 (30%), Gaps = 17/230 (7%)

Query: 64  LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
           L   + + W + +  +  +A   A+    +      G+ + +     +   G  L     
Sbjct: 65  LTKGIVELWGEGNDQDELNAAIAAFDAETKARYTAEGSTFKV----ELEDFGKTLHGTRD 120

Query: 124 WILNDIVWRKS--NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
                 V R     P   F GR      E L W+     A+G           +     R
Sbjct: 121 DNWGPAVRRIDALKPAVEFNGRARMKGAEHLFWS--IESAEGNDLRGIPSDIPSRHYFGR 178

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEAL-LSRILVSSTKPGDIILDPFFGSGTSGAV 240
                   +       K    L PT     + L    +    PG ++ DPF G+G+    
Sbjct: 179 VVAASAARAAINTYDLKKRRYLGPTSMDVEMSLIMANMVHAGPGRVVWDPFCGTGSVLIA 238

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE-LTVLTGKRTEPRVA 289
           A       +G ++         +R+   +   +++  T        P +A
Sbjct: 239 AAHFGAMTMGSDID-------VRRVKDKRTGEHVDVWTNFKDYALPPPIA 281


>gi|186683603|ref|YP_001866799.1| methyltransferase type 11 [Nostoc punctiforme PCC 73102]
 gi|186466055|gb|ACC81856.1| Methyltransferase type 11 [Nostoc punctiforme PCC 73102]
          Length = 248

 Score = 39.6 bits (91), Expect = 0.78,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 44/111 (39%), Gaps = 3/111 (2%)

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
             L+ ++L+        ILD   G+G        +     G++  ++ +++A ++  SV+
Sbjct: 29  VELMEKLLLQYLPKEAHILDLCCGTGPVAQRLLLMGYQVTGLDGSEEMLNLARQKAPSVK 88

Query: 270 PLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
            L           R    ++   L+    I   + LT+   N+  ++  +G
Sbjct: 89  FLQGDARFFKFTSRFNAVISLASLM---YILSIEELTSVFQNMYDSLLENG 136


>gi|226330661|ref|ZP_03806179.1| hypothetical protein PROPEN_04581 [Proteus penneri ATCC 35198]
 gi|225201456|gb|EEG83810.1| hypothetical protein PROPEN_04581 [Proteus penneri ATCC 35198]
          Length = 268

 Score = 39.6 bits (91), Expect = 0.79,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 45/142 (31%), Gaps = 22/142 (15%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
             N   N +   + ++++ + +  L +   +  D+IF DPP         +     + + 
Sbjct: 141 KKNFQANGLSGRQHRLMQADCLQWLMQ-SNEQFDVIFIDPP--------TFSNSKRMENT 191

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
                D               +   +R+L+  GT+    +          L  +   +  
Sbjct: 192 FDVQRDHI-----------ELMKHLKRLLRKGGTIMFSNNKRGFKMEHEELAKIG--LRA 238

Query: 128 DIVWRKSNPMPNFRGRRFQNAH 149
             + +K+      R R+  N  
Sbjct: 239 KEITQKTLSQDFARNRQIHNCW 260


>gi|219848628|ref|YP_002463061.1| ribosomal protein L11 methyltransferase [Chloroflexus aggregans DSM
           9485]
 gi|219542887|gb|ACL24625.1| ribosomal protein L11 methyltransferase [Chloroflexus aggregans DSM
           9485]
          Length = 327

 Score = 39.6 bits (91), Expect = 0.79,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G  LHPT +   L  ++L    +P   +LD   GSG     A KL     + ++     +
Sbjct: 147 GTGLHPTTR---LCLQLLERMVQPDQHVLDLGTGSGILAIAAAKLGAGHVLALDNDPIAV 203

Query: 259 DIATKRIASVQ 269
            +A + +   Q
Sbjct: 204 RVAQENVERNQ 214


>gi|322369667|ref|ZP_08044231.1| hypothetical protein ZOD2009_09268 [Haladaptatus paucihalophilus
           DX253]
 gi|320550837|gb|EFW92487.1| hypothetical protein ZOD2009_09268 [Haladaptatus paucihalophilus
           DX253]
          Length = 91

 Score = 39.6 bits (91), Expect = 0.80,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 23/45 (51%)

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
           E+      E  H  + PE+ +   +   +K GD +LDPF G GT+
Sbjct: 10  EKPDELPSEFGHDIRTPESFVEEFVTEFSKDGDTVLDPFAGFGTT 54


>gi|293607598|ref|ZP_06689932.1| ribosomal RNA small subunit methyltransferase D [Achromobacter
           piechaudii ATCC 43553]
 gi|292814031|gb|EFF73178.1| ribosomal RNA small subunit methyltransferase D [Achromobacter
           piechaudii ATCC 43553]
          Length = 202

 Score = 39.6 bits (91), Expect = 0.80,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYN 50
           +I  G+++ V E++ A   DLI  DPP+ 
Sbjct: 116 RIHVGDAMQVAERMDASRFDLILLDPPFG 144


>gi|255075629|ref|XP_002501489.1| predicted protein [Micromonas sp. RCC299]
 gi|226516753|gb|ACO62747.1| predicted protein [Micromonas sp. RCC299]
          Length = 187

 Score = 39.6 bits (91), Expect = 0.80,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 21/41 (51%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
            +N +  ++F    + + GN+  V+  LP  S D I  DPP
Sbjct: 78  RMNPHSAALFSGDIRQLYGNAADVVPTLPDDSFDRIVHDPP 118


>gi|15605998|ref|NP_213375.1| hypothetical protein aq_533 [Aquifex aeolicus VF5]
 gi|2983178|gb|AAC06779.1| hypothetical protein aq_533 [Aquifex aeolicus VF5]
          Length = 380

 Score = 39.6 bits (91), Expect = 0.80,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 22/47 (46%)

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           + +  K GD +LD F  SG             +G+++ +  +++A +
Sbjct: 204 VRNLVKEGDRVLDLFCYSGGFSVYCANRGAKVVGVDINKRAVELARE 250


>gi|297156241|gb|ADI05953.1| putative oxidoreductase [Streptomyces bingchenggensis BCW-1]
          Length = 617

 Score = 39.6 bits (91), Expect = 0.80,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 50/134 (37%), Gaps = 18/134 (13%)

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG----------NIELTVLTG 281
            G+G +  +A +  R  IG+++ +     A   + +                 +      
Sbjct: 39  MGTGIAELLA-RAGREVIGVDISESAARRAFAALETATARAVRRERMTEREREDALARFR 97

Query: 282 KRTEPRVAFNLLVERGLIQPGQILTNAQGNIS----ATVCADGTLISGTELGSIHRVGAK 337
            RT+ R A +  +   +I+      + +  +     A V  D  L +GT   S+ R+ A 
Sbjct: 98  ARTDLRAAADADL---VIEVVPESYDIKREVFTALDAVVRPDAILATGTNALSVTRLAAD 154

Query: 338 VSGSETCNGWNFWY 351
            +  E   G +F++
Sbjct: 155 SAHPERVLGLHFFH 168


>gi|254172058|ref|ZP_04878734.1| Putative RNA methylase family UPF0020 [Thermococcus sp. AM4]
 gi|214033954|gb|EEB74780.1| Putative RNA methylase family UPF0020 [Thermococcus sp. AM4]
          Length = 366

 Score = 39.6 bits (91), Expect = 0.80,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 39/117 (33%), Gaps = 8/117 (6%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA-- 266
           P  L   ++  +     + LDPF G GT             G +   + +  A + I   
Sbjct: 176 PPRLARIMVNLTEIRKGLFLDPFCGIGTVLQEFVLQGLPAYGSDRDPERVREARRNIEWL 235

Query: 267 ----SVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
                ++    IE+      +   R  F+ +V    +  G+ L    G   A   A+
Sbjct: 236 RKEFRLRNSARIEVCDARKLKRCFRERFDAIVTEPYL--GKPLKRNPGRGEAIKLAN 290


>gi|212715613|ref|ZP_03323741.1| hypothetical protein BIFCAT_00512 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660980|gb|EEB21555.1| hypothetical protein BIFCAT_00512 [Bifidobacterium catenulatum DSM
           16992]
          Length = 714

 Score = 39.6 bits (91), Expect = 0.80,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 6/82 (7%)

Query: 284 TEPRVAFNLLVERGLIQPGQIL-TNAQG---NISATVCADGTL-ISGTELGSIHRVGAKV 338
           T  RV+   ++E GL+ PG+ L  +         ATV A+G L +      S     A+ 
Sbjct: 623 TSKRVSIAQVLEAGLLIPGETLVWDRPRKGERWVATVTAEGKLRMDDGNEYSTPTAAARA 682

Query: 339 SGSETCNGWNFWYFEKLGELHS 360
            G  +  G   W     G+  S
Sbjct: 683 VGGSS-AGLTVWKRTSNGQKLS 703


>gi|41615225|ref|NP_963723.1| hypothetical protein NEQ440 [Nanoarchaeum equitans Kin4-M]
 gi|40068949|gb|AAR39284.1| NEQ440 [Nanoarchaeum equitans Kin4-M]
          Length = 295

 Score = 39.6 bits (91), Expect = 0.80,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 24/63 (38%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            HP+     L   ++  +      I DPF G G     A  +     G ++ +  ++ A 
Sbjct: 128 FHPSSIIPTLAKVLINLTGLKEGTIYDPFCGIGGILIEAALMGFQVKGSDIDEKMLECAK 187

Query: 263 KRI 265
           + +
Sbjct: 188 QNL 190


>gi|127512740|ref|YP_001093937.1| 23S rRNA m(2)G2445 methyltransferase [Shewanella loihica PV-4]
 gi|229560177|sp|A3QDY0|RLML_SHELP RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|126638035|gb|ABO23678.1| putative RNA methylase [Shewanella loihica PV-4]
          Length = 711

 Score = 39.6 bits (91), Expect = 0.80,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 41/135 (30%), Gaps = 25/135 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           + I+G+ +  ++    +  DLIF DPP         +     + D+     D        
Sbjct: 601 QFIQGDCLQWIDDC-DQQYDLIFIDPP--------TFSNSKRMEDSFDVQRDHVK----- 646

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
                  L A  ++L+P G +    +          L  L   I N              
Sbjct: 647 ------LLSALVKLLRPGGEILFSNNKRKFKMDSEALSALGLSITN-----LDKQTLPLD 695

Query: 142 GRRFQNAHETLIWAS 156
            +R  + H T +   
Sbjct: 696 YKRNPHIHNTWLIQH 710


>gi|316964010|gb|EFV49327.1| tRNA guanosine-2'-O-methyltransferase TRM11-like protein
           [Trichinella spiralis]
          Length = 428

 Score = 39.6 bits (91), Expect = 0.81,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           D++LDP+ GSG+    A       +G+E+ 
Sbjct: 231 DLVLDPYVGSGSILLPAAHFGGYCVGVEID 260


>gi|317501056|ref|ZP_07959262.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|316897443|gb|EFV19508.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 8_1_57FAA]
          Length = 460

 Score = 39.6 bits (91), Expect = 0.81,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 6/89 (6%)

Query: 206 TQKPEALLSRILVSSTKPGDI-ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT-- 262
           T+  E L   +        D+ + D F G+GT   V   + +  IG+E+ ++ ++ A   
Sbjct: 295 TKGAEVLYETVREYIGDIHDLTVFDLFSGTGTISQVLAPVAKKVIGVEIVEEAVEAAKEN 354

Query: 263 -KR--IASVQPLGNIELTVLTGKRTEPRV 288
            +R  +++ + +      VL   + +P V
Sbjct: 355 AERNGLSNCEFIAGDVFEVLDDIKEKPDV 383


>gi|257091529|ref|YP_003165172.1| hypothetical protein CAP2UW1_4592 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048538|gb|ACV37725.1| hypothetical protein CAP2UW1_4592 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 985

 Score = 39.6 bits (91), Expect = 0.81,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 32/106 (30%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPY--NLQL--------------NGQLYRP--DHSLVDA 67
           G+S+     +   S+D +  DPPY  N+                 G +Y      +L D 
Sbjct: 535 GDSLD---HIADASIDAVVMDPPYYDNVMYAELSDFFYVWLKRTAGYIYPELFRRALTDK 591

Query: 68  VTDSWDKFSSFE-----------AYDAFTRAWLLACRRVLKPNGTL 102
             ++    + F+            Y     A     RRVLKP+G +
Sbjct: 592 ENEAVANPAKFKGEKGAKALAGRDYQQRMAAIFTEMRRVLKPDGIM 637


>gi|119483337|ref|ZP_01618751.1| DNA methyltransferase [Lyngbya sp. PCC 8106]
 gi|119458104|gb|EAW39226.1| DNA methyltransferase [Lyngbya sp. PCC 8106]
          Length = 414

 Score = 39.6 bits (91), Expect = 0.81,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 18/39 (46%)

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           L+   +   IILDPF G+ T+  VA +        ++  
Sbjct: 44  LLIGAEENLIILDPFSGTATTALVAAENAYQAYSFDINP 82


>gi|325967647|ref|YP_004243839.1| methyltransferase [Vulcanisaeta moutnovskia 768-28]
 gi|323706850|gb|ADY00337.1| methyltransferase [Vulcanisaeta moutnovskia 768-28]
          Length = 214

 Score = 39.6 bits (91), Expect = 0.82,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 227 ILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           +LD   G+G     A  +  R  I I++  + + IA +
Sbjct: 60  VLDLGCGTGRFAIAAALMGVRQVICIDIDPEALAIARE 97


>gi|303256679|ref|ZP_07342693.1| ribosomal protein L11 methyltransferase [Burkholderiales bacterium
           1_1_47]
 gi|330999319|ref|ZP_08323036.1| ribosomal protein L11 methyltransferase [Parasutterella
           excrementihominis YIT 11859]
 gi|302860170|gb|EFL83247.1| ribosomal protein L11 methyltransferase [Burkholderiales bacterium
           1_1_47]
 gi|329575177|gb|EGG56728.1| ribosomal protein L11 methyltransferase [Parasutterella
           excrementihominis YIT 11859]
          Length = 299

 Score = 39.6 bits (91), Expect = 0.82,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 4/63 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYI 258
           G   HPT +   L    L      G  +LD   GSG     AKKL     +G ++    I
Sbjct: 144 GTGTHPTTR---LCLEWLHDHNLEGKSVLDYGCGSGILAVAAKKLGASKVLGTDIDPQAI 200

Query: 259 DIA 261
           + A
Sbjct: 201 EAA 203


>gi|293363711|ref|ZP_06610456.1| conserved domain protein [Mycoplasma alligatoris A21JP2]
 gi|292552723|gb|EFF41488.1| conserved domain protein [Mycoplasma alligatoris A21JP2]
          Length = 152

 Score = 39.6 bits (91), Expect = 0.82,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 9/74 (12%)

Query: 222 KPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYID--IATKRIASVQP-LG 272
           K   +ILD F GSGT+G    +L       R FI +   ++ I   +  +R+  V    G
Sbjct: 6   KKNSLILDFFGGSGTTGHAVLELNKEDNGNRKFILVTNNENNIATYVTYERLYRVINGKG 65

Query: 273 NIELTVLTGKRTEP 286
           + +  +   ++ EP
Sbjct: 66  SNDQKIAWTEKNEP 79


>gi|228984386|ref|ZP_04144565.1| O-antigen biosynthesis protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229154881|ref|ZP_04282995.1| O-antigen biosynthesis protein [Bacillus cereus ATCC 4342]
 gi|228628439|gb|EEK85152.1| O-antigen biosynthesis protein [Bacillus cereus ATCC 4342]
 gi|228775355|gb|EEM23742.1| O-antigen biosynthesis protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 229

 Score = 39.6 bits (91), Expect = 0.82,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 56/160 (35%), Gaps = 24/160 (15%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L  +  E  +    P  LL  I     +    +LD     G  GA  K+      GIE  
Sbjct: 8   LYEEKSEHYYNAANP-NLLKHIKKEWKE----VLDIGCSGGALGAAIKENGTRVSGIEAF 62

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNA---QG 310
            +  + A +R+  V  LG+IE   L  +  +   V F  ++E         L +      
Sbjct: 63  PEAAEKAKERLDHVI-LGDIEKIDLPYEEEQFDCVIFGDVLEH--------LFDPWAVIE 113

Query: 311 NISATVCADGTLISGTELGSIHRVGAKVSGSETCNG-WNF 349
            +   +  +G +++     SI  V      +    G W +
Sbjct: 114 KVKPYIKENGVILA-----SIPNVAHISVLAPLLAGNWTY 148


>gi|308813239|ref|XP_003083926.1| Putative RNA methylase (ISS) [Ostreococcus tauri]
 gi|116055808|emb|CAL57893.1| Putative RNA methylase (ISS) [Ostreococcus tauri]
          Length = 868

 Score = 39.6 bits (91), Expect = 0.82,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278
           +  +PG +++DPF G+G+    A       +G+++    I       A ++  G   +  
Sbjct: 197 AQARPGGVVMDPFCGTGSMLVAAAHYGALTMGLDIDPRVIKHGKA--AKMKNQGKFMMKA 254

Query: 279 LTG 281
             G
Sbjct: 255 EDG 257



 Score = 37.7 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 50/152 (32%), Gaps = 18/152 (11%)

Query: 23  IIKGNSISVLEKLP------AKSVDLIFADPPYNLQLNGQLYR------PDHSLVDAVTD 70
           +I G+    L  LP         +  I ADPPY ++  G+          D+S+ + + +
Sbjct: 276 LIHGD----LHALPTRAHGLEGYLQGIVADPPYGVRAGGRKSGGRKPLPEDYSIPEELKE 331

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
                ++   +       L    R L   G L       +I      +++L    L  + 
Sbjct: 332 GHIPSTAPYPFGEMCDDLLDLAARFLSVGGKLVFFL-PGSIAEAEREIRDLPTHPLLRLR 390

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
           W       N  GRR    +E +         K
Sbjct: 391 WHSLETFNNLWGRRLVT-YEKIAPWDRDVCDK 421


>gi|261210151|ref|ZP_05924448.1| ribosomal RNA small subunit methyltransferase D [Vibrio sp. RC341]
 gi|260840691|gb|EEX67240.1| ribosomal RNA small subunit methyltransferase D [Vibrio sp. RC341]
          Length = 199

 Score = 39.6 bits (91), Expect = 0.82,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 1   MSQKNSLAINENQNSIFEWK---DKIIKGNSISVLEKLPAKSVDLIFADPPY 49
           M + N LA N+ + ++   K    ++I  ++++ L +   K  D++F DPP+
Sbjct: 87  MLELNPLAFNQLKTNVQSLKAENIELIHMDALAFLRQ-SGKPYDVVFIDPPF 137


>gi|325981090|ref|YP_004293492.1| 50S ribosomal protein L11 methyltransferase [Nitrosomonas sp.
           AL212]
 gi|325530609|gb|ADZ25330.1| ribosomal protein L11 methyltransferase [Nitrosomonas sp. AL212]
          Length = 305

 Score = 39.6 bits (91), Expect = 0.82,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYI 258
           G   HPT     L    L  + +PGD ++D   GSG     A KL  S + GI++    +
Sbjct: 144 GTGSHPTT---QLCLSWLDQNLQPGDKVVDYGCGSGILTVAALKLGASHVAGIDIDPQAV 200

Query: 259 DIATK 263
             + +
Sbjct: 201 KASQE 205


>gi|261403398|ref|YP_003247622.1| protein of unknown function DUF1156 [Methanocaldococcus vulcanius
           M7]
 gi|261370391|gb|ACX73140.1| protein of unknown function DUF1156 [Methanocaldococcus vulcanius
           M7]
          Length = 993

 Score = 39.6 bits (91), Expect = 0.83,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 12/53 (22%)

Query: 6   SLAINENQNSIFEWKDKI---------IKGNSISVLEKLPAKSVDLIFADPPY 49
           + A++   N++ ++ +KI         I+G++ S+   L  +  D+I  DPPY
Sbjct: 509 TSALSHKPNNLDDYFNKINNDSSNIKIIQGDATSL--NL-GEQFDIIVTDPPY 558


>gi|168186539|ref|ZP_02621174.1| cyclopropane fatty acid synthase family protein [Clostridium
           botulinum C str. Eklund]
 gi|169295425|gb|EDS77558.1| cyclopropane fatty acid synthase family protein [Clostridium
           botulinum C str. Eklund]
          Length = 391

 Score = 39.6 bits (91), Expect = 0.83,   Method: Composition-based stats.
 Identities = 62/304 (20%), Positives = 101/304 (33%), Gaps = 31/304 (10%)

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
           + F +        V   +GT+   G  ++ F+I          IL D          N  
Sbjct: 7   NKFLKELFSDTCEVQYWDGTVEKFGEGNSKFKIFINEHIKEKDILRDPFLTLGEAYMNSI 66

Query: 142 GRRFQNAHETL---------IWASPSPKAKGYTFNYDALKAANEDVQMRSD--------W 184
                N    +              S  +K Y     ++K   +D+Q   D        W
Sbjct: 67  IDFDGNIQTIIESIYKNKDSFLHKASIFSKLYRITNHSIKQNKKDIQFHYDLGNDFYSIW 126

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST-KPGDIILDPFFGSGTSGA-VAK 242
           L    S S        + L+  Q  +  +  IL     K GD +LD   G G      AK
Sbjct: 127 LDDTMSYSCAYFKTKEDTLYDAQLNK--VKYILKKLNLKNGDRLLDIGCGWGELIIEAAK 184

Query: 243 KLRRSFIGIEMKQDYIDIATKRIAS--VQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
           +      GI +  + ++    RI    ++ L  ++L        E R  F+ +V  G+ +
Sbjct: 185 EYGVKATGITLSSEQVEKVNDRIKKNGIEDLVEVKLMDYRELLKENR-KFDRIVSVGMAE 243

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
                   + NI A +     L+    +  +H + A+V G    N W   Y    G + S
Sbjct: 244 -----HVGRKNIPAYIADISKLLEDKGVCLLHCITAQVEGEA--NEWIKRYIFPGGYIPS 296

Query: 361 INTL 364
           I  L
Sbjct: 297 IREL 300


>gi|255524278|ref|ZP_05391237.1| methyltransferase [Clostridium carboxidivorans P7]
 gi|296185397|ref|ZP_06853807.1| RNA methyltransferase, RsmD family [Clostridium carboxidivorans P7]
 gi|255512103|gb|EET88384.1| methyltransferase [Clostridium carboxidivorans P7]
 gi|296050231|gb|EFG89655.1| RNA methyltransferase, RsmD family [Clostridium carboxidivorans P7]
          Length = 186

 Score = 39.6 bits (91), Expect = 0.84,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSV--DLIFADPPY 49
            +  S  +   +N  F+   K I  +S   LE+   K +  DLIF DPPY
Sbjct: 75  PETYSFLVKNVENLKFQQICKCINMDSYKALEEFARKKIVFDLIFIDPPY 124


>gi|294508110|ref|YP_003572168.1| conserved hypothetical protein containing methylase domain
           [Salinibacter ruber M8]
 gi|294344438|emb|CBH25216.1| conserved hypothetical protein containing methylase domain
           [Salinibacter ruber M8]
          Length = 237

 Score = 39.6 bits (91), Expect = 0.84,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           I+G+++  L      ++DLI ADPPY L    ++       +D       + SS + +D 
Sbjct: 131 IQGDAVEYLRTYQGPALDLIMADPPYKLDAMKEMPDLAVPHLDTDGVFTLEHSSHDWFDE 190


>gi|83816067|ref|YP_446184.1| hypothetical protein SRU_2078 [Salinibacter ruber DSM 13855]
 gi|83757461|gb|ABC45574.1| conserved hypothetical protein TIGR00095 [Salinibacter ruber DSM
           13855]
          Length = 204

 Score = 39.6 bits (91), Expect = 0.84,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           I+G+++  L      ++DLI ADPPY L    ++       +D       + SS + +D 
Sbjct: 98  IQGDAVEYLRTYQGPALDLIMADPPYKLDAMKEMPDLAVPHLDTDGVFTLEHSSHDWFDE 157


>gi|313902235|ref|ZP_07835642.1| protein of unknown function DUF1156 [Thermaerobacter subterraneus
           DSM 13965]
 gi|313467515|gb|EFR63022.1| protein of unknown function DUF1156 [Thermaerobacter subterraneus
           DSM 13965]
          Length = 946

 Score = 39.6 bits (91), Expect = 0.85,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 1/68 (1%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           G  R   +     HP    EA     L         +LDPF G G+    A +L      
Sbjct: 81  GIIRKMMQKQLHKHPEVYAEARAEM-LKHCDGKLPPVLDPFAGGGSIPLEAARLGFEAYA 139

Query: 251 IEMKQDYI 258
            ++    +
Sbjct: 140 GDINPVAV 147


>gi|75909388|ref|YP_323684.1| cytosine-specific DNA-methyltransferase [Anabaena variabilis ATCC
           29413]
 gi|75703113|gb|ABA22789.1| site-specific DNA-methyltransferase (cytosine-specific) [Anabaena
           variabilis ATCC 29413]
          Length = 482

 Score = 39.6 bits (91), Expect = 0.85,   Method: Composition-based stats.
 Identities = 6/36 (16%), Positives = 13/36 (36%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
           +   + + +L +      D I   PPY  + +    
Sbjct: 281 LFNASCLKILPEFEQDFYDCIITSPPYCNRYDYTRT 316



 Score = 39.6 bits (91), Expect = 0.89,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 15/89 (16%)

Query: 208 KPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
               L+++++     KP + ILDPF G+GT             GIE+         + I 
Sbjct: 76  FSVDLVNQLIFEYEKKPFERILDPFAGAGTMLFACSDAGIQADGIELLP-----IGQEII 130

Query: 267 SVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            V+ +          +R   R  F  L+E
Sbjct: 131 KVRKI---------IQRQFRREDFLRLIE 150


>gi|28210920|ref|NP_781864.1| methyltransferase [Clostridium tetani E88]
 gi|28203359|gb|AAO35801.1| methyltransferase [Clostridium tetani E88]
          Length = 185

 Score = 39.6 bits (91), Expect = 0.85,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP--AKSVDLIFADPPY 49
            +  SL     +N  FE K K +  +S   L  L    +  DLIF DPPY
Sbjct: 74  PKTYSLLETNVKNLGFEDKCKCLNMDSYDALTFLKEKGEEFDLIFIDPPY 123


>gi|220932865|ref|YP_002509773.1| methyltransferase small [Halothermothrix orenii H 168]
 gi|219994175|gb|ACL70778.1| methyltransferase small [Halothermothrix orenii H 168]
          Length = 246

 Score = 39.6 bits (91), Expect = 0.85,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 41/103 (39%), Gaps = 11/103 (10%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           E   + I+G+   + + +  +SVDL+  +PPY     G++ +     +           +
Sbjct: 88  EEIIEFIEGDIKEIDDYIELESVDLVVCNPPYMPPDKGKITKNREKAI-----------A 136

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
                   +  +    RVL+  G + ++     +  I T+++ 
Sbjct: 137 RHEILITLKDVIKQGSRVLRLGGRMAMVHRTWRLPEIITLMRE 179


>gi|313633216|gb|EFS00089.1| ribosomal protein L11 methyltransferase [Listeria seeligeri FSL
           N1-067]
 gi|313637807|gb|EFS03152.1| ribosomal protein L11 methyltransferase [Listeria seeligeri FSL
           S4-171]
          Length = 314

 Score = 39.6 bits (91), Expect = 0.86,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 16/170 (9%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKD-----GEKLHPTQKPEALLSRILVSST 221
            Y       + + +   W     S +E +   D     G   HPT     L  R L    
Sbjct: 116 KYYHPVQITDRITIVPSWESYTPSANEIIIELDPGMAFGTGTHPTT---QLCIRALSDYM 172

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATK--RIASVQPLGNIELTV 278
           +PGD ++D   GSG     + KL    I   ++ +  I  A +  R+     +  ++   
Sbjct: 173 QPGDQLIDVGTGSGVLSIASAKLGAKSILATDLDEVAIRAAEENIRLNKTDDIITVKQNN 232

Query: 279 LTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTEL 328
           L     +  V    +V   ++    +L      + A +   G  I+   +
Sbjct: 233 LLQDINQTNV---DIVVANILAEVILLFPED--VFAALKPGGIFIASGII 277


>gi|297627184|ref|YP_003688947.1| hypothetical protein PFREUD_20380 [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922949|emb|CBL57531.1| Hypothetical protein PFREUD_20380 [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 418

 Score = 39.6 bits (91), Expect = 0.86,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           T+    +LDP  G GT+   A     +  G+E+     +
Sbjct: 171 TRRQFDVLDPLAGRGTTLLTAWTAGHNAYGVELDTSAFE 209


>gi|288958522|ref|YP_003448863.1| cyclopropane-fatty-acyl-phospholipid synthase [Azospirillum sp.
           B510]
 gi|288910830|dbj|BAI72319.1| cyclopropane-fatty-acyl-phospholipid synthase [Azospirillum sp.
           B510]
          Length = 422

 Score = 39.6 bits (91), Expect = 0.86,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 9/137 (6%)

Query: 223 PGDIILDP-FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
           PG  +LD      G +  +A+       GI +  + + +A +R         +   +   
Sbjct: 168 PGMRVLDIGCGWGGMALYLARHTGARVTGITLSSEQLTVARQRAEEAGLADRVTFELRDY 227

Query: 282 KR--TEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVS 339
           +      R AF+ +V  G+ +   +      +    V     +++   +  IH +G ++ 
Sbjct: 228 REFAAAHRGAFDRIVSVGMFE--HVGVPHYRDYFDAVRD---MLNDDGVALIHSIG-RLD 281

Query: 340 GSETCNGWNFWYFEKLG 356
           G  + N W   Y    G
Sbjct: 282 GPASTNPWIRKYIFPGG 298


>gi|257887398|ref|ZP_05667051.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           1,141,733]
 gi|257823452|gb|EEV50384.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus faecium
           1,141,733]
          Length = 388

 Score = 39.6 bits (91), Expect = 0.86,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 69/211 (32%), Gaps = 14/211 (6%)

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
            + L W     K        D     +        WL P  + S    N   + L   Q 
Sbjct: 94  KDYLKWLPKKEKHTKQKNKEDIHAHYDLGNDFYKLWLDPTLTYSCAYFNTPEDTLEQAQI 153

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
              +   +     K G+ +LD   G GT     AK+      GI + ++  D+ TK+I  
Sbjct: 154 N-KVHHILDKLFIKEGETLLDIGCGWGTLMFTAAKEYNVKATGITLSEEQYDLITKKIKE 212

Query: 268 VQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP--GQILTNAQGNISATVCADGTLISG 325
            + L +    +L   R      F+ +   G+ +    + L      +   +   GT +  
Sbjct: 213 -EHLEDKCRVLLMDYRELKGEMFDHITSVGMFEHVGSENLEGYFKVVKDLLKPKGTAL-- 269

Query: 326 TELGSIHRVGAKVSGSETCNGWNFWYFEKLG 356
                IH +  +  G+   N W   Y    G
Sbjct: 270 -----IHGISRQQGGAT--NAWINKYIFPGG 293


>gi|256027339|ref|ZP_05441173.1| ribosomal RNA small subunit methyltransferase C [Fusobacterium sp.
           D11]
 gi|289765308|ref|ZP_06524686.1| 16S rRNA m(2)G 1207 methyltransferase [Fusobacterium sp. D11]
 gi|289716863|gb|EFD80875.1| 16S rRNA m(2)G 1207 methyltransferase [Fusobacterium sp. D11]
          Length = 213

 Score = 39.6 bits (91), Expect = 0.86,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 42/115 (36%), Gaps = 14/115 (12%)

Query: 21  DKI---IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           +KI   I+   I + E   +   D+I ++PPY      ++   +H  +           S
Sbjct: 91  NKIEKNIQFECIDIREYRKSNYFDVIISNPPYMDDNGKKINENEHKAI-----------S 139

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
                      +   +R+LKP G L+ I   H +  I   L   NF I   I   
Sbjct: 140 RHEIKLSLNELISNAKRLLKPIGFLYFIHRTHRLVEIIKALDKNNFSIKKIIFIY 194


>gi|224543151|ref|ZP_03683690.1| hypothetical protein CATMIT_02351 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523938|gb|EEF93043.1| hypothetical protein CATMIT_02351 [Catenibacterium mitsuokai DSM
           15897]
          Length = 479

 Score = 39.6 bits (91), Expect = 0.86,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 28/53 (52%)

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           EAL S+ L   T     I+D + G GT G +A K  +  IG+E+ +D +  A 
Sbjct: 214 EALYSKALSLITVKDPKIMDTYCGIGTIGLIASKNAKQVIGVELNKDAVKDAK 266


>gi|242022009|ref|XP_002431434.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212516722|gb|EEB18696.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 466

 Score = 39.6 bits (91), Expect = 0.86,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            +  K GDI++DPF GSG+    A       +G+++ 
Sbjct: 205 QALIKSGDIVMDPFVGSGSLLVAAAHFGAYVLGVDID 241


>gi|30021511|ref|NP_833142.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus ATCC
           14579]
 gi|229128684|ref|ZP_04257662.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus
           BDRD-Cer4]
 gi|229145989|ref|ZP_04274368.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus
           BDRD-ST24]
 gi|296503923|ref|YP_003665623.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus
           thuringiensis BMB171]
 gi|29897066|gb|AAP10343.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus ATCC
           14579]
 gi|228637597|gb|EEK94048.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus
           BDRD-ST24]
 gi|228654877|gb|EEL10737.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus
           BDRD-Cer4]
 gi|296324975|gb|ADH07903.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus
           thuringiensis BMB171]
          Length = 390

 Score = 39.6 bits (91), Expect = 0.86,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 77/214 (35%), Gaps = 12/214 (5%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
            + S    +K    +  A      +   +  WL    + S      + + L   Q    +
Sbjct: 96  YFKSKWNFSKQKNKDDIAHHYDIGNDFYKL-WLDETMTYSCAYFQNEQDSLTTAQ-HNKV 153

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
              +   + + GD +LD   G G    A AK+     +G+ + ++     ++RI   + L
Sbjct: 154 NHILKKLNLQKGDTLLDIGCGWGELITAAAKQYGVKAMGVTLSEEQYAKTSERIKQ-EGL 212

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLI-QPGQILTNAQGNISATVCADGTLISGTELGS 330
            ++    L   R      F+ +V  G+I   G+            +  DG +        
Sbjct: 213 TDLVEVSLLDYRDIKNHKFDKIVSVGMIEHVGKDNITQYFETVNKLLNDGGISL------ 266

Query: 331 IHRVGAKVSGSETCNGWNFWYFEKLGELHSINTL 364
           +H + +  +G  T NGW   Y    G + ++N L
Sbjct: 267 LHCITSPANGGAT-NGWIEKYIFPGGYVPAVNEL 299


>gi|326519392|dbj|BAJ96695.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 354

 Score = 39.6 bits (91), Expect = 0.87,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 214 SRILVSSTKPGDII----LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            R L     P D +    LD   GSG SG    +    +IG ++ Q  +D+A +R
Sbjct: 98  ERALELLALPDDGVPKMLLDIGCGSGLSGETLTEHGHHWIGCDISQSMLDVALER 152


>gi|116330130|ref|YP_799848.1| methylase of polypeptide chain release factors [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|116123819|gb|ABJ75090.1| Methylase of polypeptide chain release factors [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 286

 Score = 39.6 bits (91), Expect = 0.87,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 12/90 (13%)

Query: 22  KII-KGNSISVLEK-----LPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           +II +GN+I  LE      +P +S  DLI  +PPY + ++ +       + D V      
Sbjct: 163 QIIGEGNNIQFLESNLFLSIPKESEFDLIVTNPPY-IPISDKTAM----MKDVVDYEPHL 217

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
               E    F    +   R  LK  G  ++
Sbjct: 218 ALFLEDPKEFLSKLIEDARIHLKEGGKFYM 247


>gi|325089231|gb|EGC42541.1| polyketide synthase [Ajellomyces capsulatus H88]
          Length = 2479

 Score = 39.6 bits (91), Expect = 0.87,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 53/135 (39%), Gaps = 12/135 (8%)

Query: 217  LVSSTKPGDIILDPFFGSGTS---GAVAKKLRR------SFIGIEMKQDYIDIATKRIAS 267
            L+  +KP   IL+   G+G +        + +        +   ++   +   A +R   
Sbjct: 1353 LLGHSKPNMKILEVGAGTGATTQTILSGLRTKEGNLAYSKYTYTDISAGFFSAAKERFKE 1412

Query: 268  V--QPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISG 325
                    ++++     +     +F+L+V   ++     L +A  +I+  +  DG L+  
Sbjct: 1413 YPNLHFSVLDISKDPISQDFAPNSFDLVVATNVLHATPSLYDALKHINRLLKPDGRLLL- 1471

Query: 326  TELGSIHRVGAKVSG 340
             EL S+++    + G
Sbjct: 1472 QELWSLNKFANYIWG 1486


>gi|260772847|ref|ZP_05881763.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio
           metschnikovii CIP 69.14]
 gi|260611986|gb|EEX37189.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio
           metschnikovii CIP 69.14]
          Length = 624

 Score = 39.6 bits (91), Expect = 0.87,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 22/130 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + +  + + +  L+       DLIF DPP         +     +  +     D      
Sbjct: 505 QHQFEQADCLKWLDN-ANGQYDLIFIDPP--------TFSNSKRMEQSFDVQRDHI---- 551

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                    +   +R+L+P GT+    +  +       LQ L   +L   +  ++ PM  
Sbjct: 552 -------LLMKNLKRILRPGGTVVFSNNKRHFKMDMDSLQELG--LLAQNISAQTLPMDF 602

Query: 140 FRGRRFQNAH 149
            R ++  N  
Sbjct: 603 ERNKQIHNCW 612


>gi|240273203|gb|EER36725.1| polyketide synthase [Ajellomyces capsulatus H143]
          Length = 2334

 Score = 39.6 bits (91), Expect = 0.87,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 53/135 (39%), Gaps = 12/135 (8%)

Query: 217  LVSSTKPGDIILDPFFGSGTS---GAVAKKLRR------SFIGIEMKQDYIDIATKRIAS 267
            L+  +KP   IL+   G+G +        + +        +   ++   +   A +R   
Sbjct: 1208 LLGHSKPNMKILEVGAGTGATTQTILSGLRTKEGNLAYSKYTYTDISAGFFSAAKERFKE 1267

Query: 268  V--QPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISG 325
                    ++++     +     +F+L+V   ++     L +A  +I+  +  DG L+  
Sbjct: 1268 YPNLHFSVLDISKDPISQDFAPNSFDLVVATNVLHATPSLYDALKHINRLLKPDGRLLL- 1326

Query: 326  TELGSIHRVGAKVSG 340
             EL S+++    + G
Sbjct: 1327 QELWSLNKFANYIWG 1341


>gi|225554365|gb|EEH02664.1| polyketide synthase [Ajellomyces capsulatus G186AR]
          Length = 2479

 Score = 39.6 bits (91), Expect = 0.87,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 53/135 (39%), Gaps = 12/135 (8%)

Query: 217  LVSSTKPGDIILDPFFGSGTS---GAVAKKLRR------SFIGIEMKQDYIDIATKRIAS 267
            L+  +KP   IL+   G+G +        + +        +   ++   +   A +R   
Sbjct: 1353 LLGHSKPNMKILEVGAGTGATTQTILSGLRTKEGNLAYSKYTYTDISAGFFSAAKERFKE 1412

Query: 268  V--QPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISG 325
                    ++++     +     +F+L+V   ++     L +A  +I+  +  DG L+  
Sbjct: 1413 YPNLHFSVLDISKDPISQDFAPNSFDLVVATNVLHATPSLYDALKHINRLLKPDGRLLL- 1471

Query: 326  TELGSIHRVGAKVSG 340
             EL S+++    + G
Sbjct: 1472 QELWSLNKFANYIWG 1486


>gi|20093603|ref|NP_613450.1| SAM-dependent methyltransferase [Methanopyrus kandleri AV19]
 gi|19886465|gb|AAM01380.1| SAM-dependent methyltransferase [Methanopyrus kandleri AV19]
          Length = 182

 Score = 39.6 bits (91), Expect = 0.87,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 37/104 (35%), Gaps = 1/104 (0%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVS-STKPGDIILDPFFGSGTSGAVAKKL 244
           + + +   +   +      P          ++ +   + GD ++D   G+G     A ++
Sbjct: 1   MSVWAFVRKALREPLRVGAPAPTRRETAEFMVRAAGVEEGDFVVDAGTGNGVVAIAAAEM 60

Query: 245 RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
               + +++  + ID+A +         +IE  V   +     V
Sbjct: 61  GCEVLAVDVDPEMIDMARRNAEEYGVEDSIEFVVADARELPELV 104


>gi|317497921|ref|ZP_07956230.1| hypothetical protein HMPREF0996_01211 [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316894800|gb|EFV16973.1| hypothetical protein HMPREF0996_01211 [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 491

 Score = 39.6 bits (91), Expect = 0.88,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 8/124 (6%)

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           ++  +  E L           Y F    ++  + D  +    L+ + +  +R  +   E 
Sbjct: 267 KKVASKLEELTAHKLRNSTSHYEFEIRMIEGKSGDYYL----LVKLNTIVDRRFSYREEF 322

Query: 203 LHPTQKPE--ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL--RRSFIGIEMKQDYI 258
           +  + KP   ALL  +      P   ILDPF G GT     +K+    +  GI+   + I
Sbjct: 323 IPTSIKPVNAALLVELAKDYMIPDAQILDPFCGVGTMLIERQKVVKGNTSYGIDHSPEAI 382

Query: 259 DIAT 262
           + A 
Sbjct: 383 EKAI 386


>gi|312378003|gb|EFR24691.1| hypothetical protein AND_10530 [Anopheles darlingi]
          Length = 279

 Score = 39.6 bits (91), Expect = 0.88,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 210 EALLSRILVSSTKPGD-----IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
             +  R +       D     +ILD   GSG SG+V +     +IG+++ +  +D+A +R
Sbjct: 34  VQMCERAIELLALDPDDDAPQLILDIGCGSGLSGSVLEDQGHVWIGVDISKPMLDVAVER 93


>gi|311070087|ref|YP_003975010.1| hypothetical protein BATR1942_15800 [Bacillus atrophaeus 1942]
 gi|310870604|gb|ADP34079.1| hypothetical protein BATR1942_15800 [Bacillus atrophaeus 1942]
          Length = 467

 Score = 39.6 bits (91), Expect = 0.88,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 49/139 (35%), Gaps = 17/139 (12%)

Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
             +  A   AN ++ +   +        ++         HP  +PE     I+       
Sbjct: 215 HHHGHATFTANREININHLYTANRQRFIDKWGTDFTYFTHP--RPE-----IVQLVPPEA 267

Query: 225 DIILDPFFGSGTSGAVAKKLRRSF---IGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
           + ILD   G+G +G   + + R      G+E+       A     +V     IE  V   
Sbjct: 268 NRILDIGCGAGATGL--ELMNRQSCELYGVELHPLAAKAARSHYKAV-----IEEDVEQA 320

Query: 282 KRTEPRVAFNLLVERGLIQ 300
           +   P   F++++   +++
Sbjct: 321 EMPYPEGFFDVIIFADILE 339


>gi|168038528|ref|XP_001771752.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676883|gb|EDQ63360.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 491

 Score = 39.6 bits (91), Expect = 0.88,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 11/78 (14%)

Query: 38  KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW--------DKFSSFEAYD--AFTRA 87
           +  D I  DPPY ++  G+       +++   D++        D   S   Y        
Sbjct: 296 EIFDAIICDPPYGVRAGGRKSG-GRKMLNGKRDAYVIPEEMRKDHIPSTAPYTLVECVHD 354

Query: 88  WLLACRRVLKPNGTLWVI 105
                 R+L   G L   
Sbjct: 355 LFDMAARLLVMGGRLVYF 372


>gi|323650441|gb|ADX97296.1| M2.EarI [Enterobacter aerogenes]
          Length = 379

 Score = 39.6 bits (91), Expect = 0.89,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 5/97 (5%)

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL---LSRILVSSTKP--GDIILDPF 231
               +    +P  SG    RN              L   ++R L+ +  P     ILD F
Sbjct: 8   KKWEQFKKELPHQSGEMVKRNWGHNWHSMCSYQGKLKPSIARSLIDTFMPSSKGRILDVF 67

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            G GT    A+ L  +  G ++    ++I+  ++  +
Sbjct: 68  SGVGTIPFEARLLGHTAYGFDISPAAVNISRAKLEVI 104


>gi|258626750|ref|ZP_05721570.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258580964|gb|EEW05893.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 707

 Score = 39.6 bits (91), Expect = 0.89,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 22/130 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + + I+ + +  L     +  DLIF DPP         +     +        D  +   
Sbjct: 594 QHQYIQADCLQWLANAQGQY-DLIFIDPP--------TFSNSKRMEQTFDVQRDHVT--- 641

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                    +   +R+L+P GT+    +  +       LQ L   +    +  ++ PM  
Sbjct: 642 --------LMTNLKRLLRPEGTIVFSNNKRHFKMDLEALQAL--ELNAQNISHQTLPMDF 691

Query: 140 FRGRRFQNAH 149
            R ++  N  
Sbjct: 692 ERNKQIHNCW 701


>gi|150401097|ref|YP_001324863.1| putative RNA methylase [Methanococcus aeolicus Nankai-3]
 gi|150013800|gb|ABR56251.1| putative RNA methylase [Methanococcus aeolicus Nankai-3]
          Length = 367

 Score = 39.6 bits (91), Expect = 0.89,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 12/72 (16%)

Query: 5   NSLAINENQNSIFEWKDKIIKGNSISV---LEKLPAKSVDLIFADPPYNLQ--LNGQLYR 59
            +  ++ N  SI +W       +++     L+ L  + VD I  DPPY +     G +  
Sbjct: 264 KTYELDNNVISIKQW-------DALDAKNYLKSLNIEKVDTIITDPPYGMSTAKKGDIEH 316

Query: 60  PDHSLVDAVTDS 71
             ++L + + D 
Sbjct: 317 ILNNLKECLKDG 328



 Score = 37.7 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 6/98 (6%)

Query: 213 LSRILVSST--KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
           L+R +V+    K GDIILDPF G+G        +    IG ++    +  A   + + + 
Sbjct: 209 LARCMVNMAQLKEGDIILDPFCGTGGFLIEGGLIGCKLIGSDIDNRMVQGALLNLKTYE- 267

Query: 271 LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNA 308
              ++  V++ K+ +   A N L    + +   I+T+ 
Sbjct: 268 ---LDNNVISIKQWDALDAKNYLKSLNIEKVDTIITDP 302


>gi|95930410|ref|ZP_01313146.1| methyltransferase small [Desulfuromonas acetoxidans DSM 684]
 gi|95133450|gb|EAT15113.1| methyltransferase small [Desulfuromonas acetoxidans DSM 684]
          Length = 402

 Score = 39.6 bits (91), Expect = 0.89,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 14  NSIFEWKDKIIKGNSISVLEKL--PAKSVDLIFADPP 48
           N I   +   I G+   VL  L    +  D++  DPP
Sbjct: 272 NRINAKRHAFICGDCFDVLPDLLAQGERFDIVIMDPP 308


>gi|315650301|ref|ZP_07903373.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315487412|gb|EFU77722.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 188

 Score = 39.6 bits (91), Expect = 0.89,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 66/192 (34%), Gaps = 23/192 (11%)

Query: 32  LEKLP----AKSVDLIFADPPYNLQLNGQLY-RPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           + K+         D+++ DPP+     G+   RP+ + +    ++ D     E ++  T 
Sbjct: 1   MAKIDIFNSGNKYDILYTDPPWQQGRGGKKTARPNSTGMTVPYETMDIPGIMELHNYVTN 60

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
             +       K N  +W I  Y  + +   ++  L + I   +VW K N        RF 
Sbjct: 61  KLMNE-----KHNVFMWTIDKY--LPQTEEIMDLLGYKIHARLVWDKGNGPAPAYTVRF- 112

Query: 147 NAHETLIWASPSPKAKGYTFNYDALK--AANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
            AHE L+W   +        +          E+ +          S       +  E   
Sbjct: 113 -AHEYLLWFYKNGNIILPNKDKRGTFSTVLRENSKRHH-------SQKPECAYQMLETFF 164

Query: 205 PTQKPEALLSRI 216
           P  K   L +RI
Sbjct: 165 PQAKKLELFARI 176


>gi|315453956|ref|YP_004074226.1| adenine specific DNA methylase [Helicobacter felis ATCC 49179]
 gi|315133008|emb|CBY83636.1| adenine specific DNA methylase [Helicobacter felis ATCC 49179]
          Length = 97

 Score = 39.6 bits (91), Expect = 0.89,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 4/99 (4%)

Query: 54  NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
           N +    +    + V D  D+      + ++         R LK +G  +    +  +  
Sbjct: 3   NKKYVNDNSKYYEFVGDGMDQRI----WISWIGFIFAQIERALKSSGYFFSFIDWRMLPA 58

Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL 152
           +   +Q  +      +VW K      F+G   Q     L
Sbjct: 59  LSDAVQLADLAWRGVMVWDKGRSARPFKGGFKQQCEFIL 97


>gi|295096315|emb|CBK85405.1| 23S rRNA m(2)G-2445 methyltransferase [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 708

 Score = 39.6 bits (91), Expect = 0.89,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 36/115 (31%), Gaps = 20/115 (17%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++++ + +  L     +  DLIF DPP         +     + D+  
Sbjct: 586 NLRLNGLTGRQHRLLQADVLGWLRD-TDEQFDLIFIDPP--------TFSNSKRMEDSFD 636

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
              D               +   +R+L+  GT+    +          L  L   
Sbjct: 637 VQRDHLR-----------LMTDLKRLLRKGGTIMFSNNKRGFRMDHDGLAELGLK 680


>gi|294494720|ref|YP_003541213.1| N2-methylguanosine tRNA methyltransferase [Methanohalophilus mahii
           DSM 5219]
 gi|292665719|gb|ADE35568.1| N2-methylguanosine tRNA methyltransferase [Methanohalophilus mahii
           DSM 5219]
          Length = 345

 Score = 39.6 bits (91), Expect = 0.89,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 27/114 (23%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +++G++  +   L    +D +  DPPY             +++ A           E+  
Sbjct: 246 LLQGDACKL--PLKKGCIDSVITDPPYG----------RSAMIKA-----------ESIR 282

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
                      RVLKP     ++    +   I  +  +  F IL     R    
Sbjct: 283 HLYEESFGEMYRVLKPGSKAVIV----SEMEINKIALDAGFTILKQYSQRIHRS 332


>gi|262171492|ref|ZP_06039170.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio mimicus
           MB-451]
 gi|261892568|gb|EEY38554.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio mimicus
           MB-451]
          Length = 707

 Score = 39.6 bits (91), Expect = 0.89,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 22/130 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + + I+ + +  L     +  DLIF DPP         +     +        D  +   
Sbjct: 594 QHQYIQADCLQWLANAQGQY-DLIFIDPP--------TFSNSKRMEQTFDVQRDHVT--- 641

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                    +   +R+L+P GT+    +  +       LQ L   +    +  ++ PM  
Sbjct: 642 --------LMTNLKRLLRPEGTIVFSNNKRHFKMDLEALQAL--ELNAQNISHQTLPMDF 691

Query: 140 FRGRRFQNAH 149
            R ++  N  
Sbjct: 692 ERNKQIHNCW 701


>gi|221485183|gb|EEE23473.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 657

 Score = 39.6 bits (91), Expect = 0.89,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 205 PTQKPEAL-LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           PT     L       +  K G ++LDPF G+G+    A     + +G ++ 
Sbjct: 392 PTSLDVELAFLMCHQAHVKRGTLVLDPFVGTGSILISASYYGATCVGSDID 442



 Score = 36.5 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 6/71 (8%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA----YDAFTRA--WLLACR 93
           VD I  DPPY ++   +              + ++  ++ +    YD  T     L    
Sbjct: 545 VDAIVTDPPYGIRAGARQSGHQQKHKRGQERTNEERLTYISPTVLYDPQTVVSDLLNLAA 604

Query: 94  RVLKPNGTLWV 104
           R+L  +G L  
Sbjct: 605 RLLVDDGRLVF 615


>gi|218667536|ref|YP_002425370.1| hypothetical protein AFE_0892 [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|218519749|gb|ACK80335.1| conserved hypothetical protein [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 407

 Score = 39.6 bits (91), Expect = 0.89,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 29/122 (23%)

Query: 24  IKGNSISVLEKLPA--KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           I G+++  L  L    +  DLI  DPP              +L+ +  D  +   ++  +
Sbjct: 278 IHGDAMETLHNLRDRGEQFDLIVLDPP--------------ALIKSKKDFKEGSIAYRRF 323

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR------IGTMLQNLNFWILNDIVWRKSN 135
           +           R+L P G L+     H++ R      I    Q  ++ I+ +      +
Sbjct: 324 NDM-------AMRLLTPGGILFSASCSHHLSRETLLSQIAFAPQRGDYQIIGEGSQDMDH 376

Query: 136 PM 137
           P+
Sbjct: 377 PV 378


>gi|114048624|ref|YP_739174.1| peptidase S10, serine carboxypeptidase [Shewanella sp. MR-7]
 gi|113890066|gb|ABI44117.1| peptidase S10, serine carboxypeptidase [Shewanella sp. MR-7]
          Length = 516

 Score = 39.6 bits (91), Expect = 0.89,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 42/134 (31%), Gaps = 8/134 (5%)

Query: 34  KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
            L  +S DL+F DP     +     R       A  D W      ++   F R WL+  +
Sbjct: 150 SLLDES-DLVFIDP-----VGTGFSRALGEKKGA--DFWGVKEDAQSIAEFMRRWLIEHK 201

Query: 94  RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           R   P               +   LQ     I  + V   S+ +     R     ++  I
Sbjct: 202 RWNSPKYLAGESYGTTRAAALVDELQGGWTDISVNGVMLISSILDFSHARYQPGNNQPYI 261

Query: 154 WASPSPKAKGYTFN 167
              P+  +  +  N
Sbjct: 262 GFLPTMASTAFYHN 275


>gi|304372975|ref|YP_003856184.1| Type III restriction-modification system methylase [Mycoplasma
           hyorhinis HUB-1]
 gi|304309166|gb|ADM21646.1| Type III restriction-modification system methylase [Mycoplasma
           hyorhinis HUB-1]
          Length = 359

 Score = 39.6 bits (91), Expect = 0.90,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT----QKPEALLSRILVSSTK 222
           N   +     +   +   LI   S S +  +KD EK+ P      KP +LL  ++    K
Sbjct: 158 NSYKIFPKRREFVYKLKDLIFSSSISTKTGSKDLEKILPNAFDFPKPVSLLKLLISLKPK 217

Query: 223 PGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYI--DIATKRI 265
               +LD F GSGT+G    +L       RSF+ +   ++ I  +I  +R+
Sbjct: 218 ENTRVLDFFAGSGTTGQAVLELNKEDGGNRSFVLVTNNENNIGQNITYERL 268


>gi|258622856|ref|ZP_05717872.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258584795|gb|EEW09528.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 707

 Score = 39.6 bits (91), Expect = 0.90,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 22/130 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + + I+ + +  L     +  DLIF DPP         +     +        D  +   
Sbjct: 594 QHQYIQADCLQWLANAQGQY-DLIFIDPP--------TFSNSKRMEQTFDVQRDHVT--- 641

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                    +   +R+L+P GT+    +  +       LQ L   +    +  ++ PM  
Sbjct: 642 --------LMTNLKRLLRPEGTIVFSNNKRHFKMDLEALQAL--ELNAQNISHQTLPMDF 691

Query: 140 FRGRRFQNAH 149
            R ++  N  
Sbjct: 692 ERNKQIHNCW 701


>gi|255319452|ref|ZP_05360666.1| tRNA (guanine-N(7)-)-methyltransferase [Acinetobacter
           radioresistens SK82]
 gi|262378524|ref|ZP_06071681.1| tRNA (guanine-N(7))-methyltransferase [Acinetobacter radioresistens
           SH164]
 gi|255303392|gb|EET82595.1| tRNA (guanine-N(7)-)-methyltransferase [Acinetobacter
           radioresistens SK82]
 gi|262299809|gb|EEY87721.1| tRNA (guanine-N(7))-methyltransferase [Acinetobacter radioresistens
           SH164]
          Length = 238

 Score = 39.6 bits (91), Expect = 0.90,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 40/121 (33%), Gaps = 16/121 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLI---FADPPYNLQLNGQLYRPDHSLVD--------AVTD 70
           +++  ++I VL ++P  S++ I   F DP    Q      R   +            +  
Sbjct: 116 RLLDADAIQVLREMPDNSINCIQLYFPDP---WQKKRHFKRRFVAHERMELVEQKLELGG 172

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRV--LKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
           ++   + +E Y  +    L    R+  L   G  +    +    +           I + 
Sbjct: 173 TFHSATDWEPYAEWMLEVLDNRPRLENLAGKGHSYPRPDWRPQTKFERRGIEAGHKINDF 232

Query: 129 I 129
           I
Sbjct: 233 I 233


>gi|255015915|ref|ZP_05288041.1| adenine-specific DNA methylase [Bacteroides sp. 2_1_7]
 gi|298376904|ref|ZP_06986858.1| modification methylase MvaI [Bacteroides sp. 3_1_19]
 gi|298265888|gb|EFI07547.1| modification methylase MvaI [Bacteroides sp. 3_1_19]
          Length = 414

 Score = 39.6 bits (91), Expect = 0.90,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 4/51 (7%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           +   SVD++   PPY        Y           + W  F + +  D   
Sbjct: 238 IQPNSVDMVVTSPPYGDSRTTVAYGQ----FSRWANEWFNFENAKTLDNLL 284



 Score = 38.8 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 204 HPTQKPEALLSRILVSSTKPGDI--ILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +P      +   ++        +  + DP+ GSGTS   A     + IG ++  
Sbjct: 27  YPAMMIPQVARALIEEYKPEDGVELLFDPYMGSGTSLVEASIKGINAIGTDLNP 80


>gi|227503859|ref|ZP_03933908.1| rRNA or tRNA methylase [Corynebacterium striatum ATCC 6940]
 gi|227199482|gb|EEI79530.1| rRNA or tRNA methylase [Corynebacterium striatum ATCC 6940]
          Length = 296

 Score = 39.6 bits (91), Expect = 0.90,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 3/30 (10%)

Query: 22  KIIKGNSIS--VLEKLPAKSVDLIFADPPY 49
           ++++G++ +   L KL   SVDL+  +PPY
Sbjct: 179 RLVQGDATAPATLRKL-DGSVDLVLTNPPY 207


>gi|150009310|ref|YP_001304053.1| adenine-specific DNA methylase [Parabacteroides distasonis ATCC
           8503]
 gi|149937734|gb|ABR44431.1| adenine-specific DNA methylase [Parabacteroides distasonis ATCC
           8503]
          Length = 414

 Score = 39.6 bits (91), Expect = 0.90,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 4/51 (7%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           +   SVD++   PPY        Y           + W  F + +  D   
Sbjct: 238 IQPNSVDMVVTSPPYGDSRTTVAYGQ----FSRWANEWFNFENAKTLDNLL 284



 Score = 37.7 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 204 HPTQKPEALLSRILVSSTKPGDI--ILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +P      +   ++        +  + DP+ GSGTS   A     + IG ++  
Sbjct: 27  YPAMMIPQVARALIEEYRPEDGVELLFDPYMGSGTSLVEASIKGINAIGTDLNP 80


>gi|218883850|ref|YP_002428232.1| putative RNA methylase [Desulfurococcus kamchatkensis 1221n]
 gi|218765466|gb|ACL10865.1| putative RNA methylase [Desulfurococcus kamchatkensis 1221n]
          Length = 340

 Score = 39.6 bits (91), Expect = 0.91,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)

Query: 213 LSRILVSSTK--PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           +SR+LV+ T+   G ++LDPF G+G+    A  +    IG+E+ 
Sbjct: 176 VSRLLVNLTRIREGMVLLDPFAGTGSILLEAWSMNIRGIGVEVD 219


>gi|167767368|ref|ZP_02439421.1| hypothetical protein CLOSS21_01887 [Clostridium sp. SS2/1]
 gi|167711343|gb|EDS21922.1| hypothetical protein CLOSS21_01887 [Clostridium sp. SS2/1]
          Length = 220

 Score = 39.6 bits (91), Expect = 0.91,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 5/48 (10%)

Query: 3   QKNSLAINENQNSIF----EWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
           ++N   I + + +I     E +  +++G++I +L+ L   S DLIF D
Sbjct: 85  ERNEKRIKKAKENIKNQGKEEQITLLEGDAIEILKGL-DGSFDLIFVD 131


>gi|301311110|ref|ZP_07217039.1| modification methylase MvaI [Bacteroides sp. 20_3]
 gi|300831173|gb|EFK61814.1| modification methylase MvaI [Bacteroides sp. 20_3]
          Length = 414

 Score = 39.6 bits (91), Expect = 0.92,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 4/51 (7%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           +   SVD++   PPY        Y           + W  F + +  D   
Sbjct: 238 IQPNSVDMVVTSPPYGDSRTTVAYGQ----FSRWANEWFNFENAKTLDNLL 284



 Score = 37.7 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 204 HPTQKPEALLSRILVSSTKPGDI--ILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +P      +   ++        +  + DP+ GSGTS   A     + IG ++  
Sbjct: 27  YPAMMIPQVARALIEEYRPEDGVELLFDPYMGSGTSLVEASIKGINAIGTDLNP 80


>gi|295108645|emb|CBL22598.1| Predicted O-methyltransferase [Ruminococcus obeum A2-162]
          Length = 250

 Score = 39.6 bits (91), Expect = 0.92,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 17/107 (15%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFAD-PPYNLQLNGQLYRPDHSLVDAVTDSW 72
           NS+    D II G+         A S D +    PPY +  +G                 
Sbjct: 96  NSLESDID-IICGDIKEAAATFGAASFD-VVTSNPPYMIGQHG-----------IQNPYM 142

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
            K  +           +     VLK  G  +++   H  FR+  + Q
Sbjct: 143 AKAIARHEILCTLEDVVSQAANVLKDRGRFFMV---HRPFRLAEIFQ 186


>gi|163790320|ref|ZP_02184752.1| methylase, putative [Carnobacterium sp. AT7]
 gi|159874391|gb|EDP68463.1| methylase, putative [Carnobacterium sp. AT7]
          Length = 190

 Score = 39.6 bits (91), Expect = 0.92,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 31/101 (30%), Gaps = 1/101 (0%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           +I    G  +L+   G    PT          ++     G + LD F GSG     A   
Sbjct: 3   IITGEYGGRKLKAVPGNNTRPTTDKVKESIFNIIGPYFDGGVCLDLFAGSGGLAIEAVSR 62

Query: 245 R-RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
                + I+     I    + I+  +     ++      R 
Sbjct: 63  GMEKAVLIDQDPLAIKTIKENISVTKEADKFDVYRNDANRA 103


>gi|19745776|ref|NP_606912.1| methyltransferase [Streptococcus pyogenes MGAS8232]
 gi|94990071|ref|YP_598171.1| methyltransferase [Streptococcus phage 10270.1]
 gi|94993983|ref|YP_602081.1| Methyltransferase [Streptococcus phage 10750.1]
 gi|139474121|ref|YP_001128837.1| hypothetical protein SpyM51298 [Streptococcus pyogenes str.
           Manfredo]
 gi|19747917|gb|AAL97411.1| putative methyltransferase [Streptococcus pyogenes MGAS8232]
 gi|94543579|gb|ABF33627.1| Methyltransferase [Streptococcus phage 10270.1]
 gi|94547491|gb|ABF37537.1| Methyltransferase [Streptococcus phage 10750.1]
 gi|134272368|emb|CAM30624.1| hypothetical phage protein [Streptococcus pyogenes str. Manfredo]
          Length = 160

 Score = 39.6 bits (91), Expect = 0.92,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 21/103 (20%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
            IN N + I +++D          +    + S +L+  DPP +L+  GQ     +S++ A
Sbjct: 41  KINVNPDVIGDFRD----------MP-FESNSFNLVVFDPP-HLKYVGQ-----NSIMKA 83

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
                DK    E +          C RVLK  GTL    S   
Sbjct: 84  QYGQLDK----ENWKEDISKGFEECMRVLKVGGTLVFKWSDCQ 122


>gi|324511498|gb|ADY44784.1| Cyclopropane-fatty-acyl-phospholipid synthase [Ascaris suum]
          Length = 452

 Score = 39.2 bits (90), Expect = 0.93,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 55/180 (30%), Gaps = 7/180 (3%)

Query: 104 VIGSYHNIFRIGTM-LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
              S HN      +    L       I  R    +  F        HE  +  S     +
Sbjct: 120 QFNSAHNASSKRRLGWLKLLCAFGQQIFVRTIRTIAWFFNYIEHRIHENSMLGSARNIHQ 179

Query: 163 GYTF-NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
            Y   N       +  +        P+     +   K  E+    +K +A+L  +     
Sbjct: 180 HYDLGNEMFQMFLDNSMTYSCALFEPLPEKITKSDFKMLEEAQM-RKYDAMLDEL---QL 235

Query: 222 KPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
           KP D +L+   G G       +K    + GI +  +   IA +R+        I+  +L 
Sbjct: 236 KPSDHVLEIGCGWGACSIRAVQKFGCRWTGITISAEQFKIAQERVREHALDDKIDFKLLD 295


>gi|319789313|ref|YP_004150946.1| ribosomal L11 methyltransferase [Thermovibrio ammonificans HB-1]
 gi|317113815|gb|ADU96305.1| ribosomal L11 methyltransferase [Thermovibrio ammonificans HB-1]
          Length = 266

 Score = 39.2 bits (90), Expect = 0.93,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 49/142 (34%), Gaps = 10/142 (7%)

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS--GSERLRNKDGEKLHPTQKPEALL 213
             S   K Y               M+ ++  P  S     R     G   H T K   L 
Sbjct: 69  WNSEWKKHYAPVNVGSGIWVVPSWMKGEFKEPEGSLVIYIRPGRGFGTGTHETTK---LA 125

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYIDIATKRIASVQPLG 272
            R +    K GD  LD   GSG    +A KL     +G +++ +      + I   Q L 
Sbjct: 126 MRFIKKLLKEGDSFLDVGCGSGILSILAAKLGASEVVGCDIQPN----LQEEIEENQRLN 181

Query: 273 NIELTVLTGKRTEPRVAFNLLV 294
            IE T + G        F+L+V
Sbjct: 182 GIEFTFVEGSVNAVNGKFDLVV 203


>gi|237746941|ref|ZP_04577421.1| ribosomal protein L11 methyltransferase [Oxalobacter formigenes
           HOxBLS]
 gi|229378292|gb|EEO28383.1| ribosomal protein L11 methyltransferase [Oxalobacter formigenes
           HOxBLS]
          Length = 312

 Score = 39.2 bits (90), Expect = 0.93,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYI 258
           G   HPT    +L    L  + K    ILD   GSG     AKKL    + G+++    +
Sbjct: 155 GTGSHPTT---SLCLEWLEKNVKKDLSILDYGCGSGILSIAAKKLGAKTVTGVDIDPQSV 211

Query: 259 DIATK 263
             + +
Sbjct: 212 ATSRE 216


>gi|229047076|ref|ZP_04192698.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus
           AH676]
 gi|228724265|gb|EEL75600.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus
           AH676]
          Length = 390

 Score = 39.2 bits (90), Expect = 0.93,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 77/214 (35%), Gaps = 12/214 (5%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
            + S    +K    +  A      +   +  WL    + S      + + L   Q    +
Sbjct: 96  YFKSKWNFSKQKNKDDIAHHYDIGNDFYKL-WLDETMTYSCAYFQNEQDSLTTAQ-HNKV 153

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
              +   + + GD +LD   G G    A AK+     +G+ + ++     ++RI   + L
Sbjct: 154 NHILKKLNLQKGDTLLDIGCGWGELITAAAKQYGVKAMGVTLSEEQYAKTSERIKQ-EGL 212

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLI-QPGQILTNAQGNISATVCADGTLISGTELGS 330
            ++    L   R      F+ +V  G+I   G+            +  DG +        
Sbjct: 213 TDLVEVSLLDYRDIKNHKFDKIVSVGMIEHVGKDNITQYFETVNKLLNDGGISL------ 266

Query: 331 IHRVGAKVSGSETCNGWNFWYFEKLGELHSINTL 364
           +H + +  +G  T NGW   Y    G + ++N L
Sbjct: 267 LHCITSPANGGAT-NGWIEKYIFPGGYVPAVNEL 299


>gi|254509231|ref|ZP_05121327.1| Putative RNA methylase family UPF0020 [Vibrio parahaemolyticus 16]
 gi|219547853|gb|EED24882.1| Putative RNA methylase family UPF0020 [Vibrio parahaemolyticus 16]
          Length = 707

 Score = 39.2 bits (90), Expect = 0.93,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 37/133 (27%), Gaps = 25/133 (18%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
           + + +  L     +  DLIF DPP         +     +  +     D           
Sbjct: 599 QADCLQWLAN-STEKFDLIFIDPP--------TFSNSKRMEQSFDVQRDHI--------- 640

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
               +   +R+L+  GT+    +  +       L  L     N      SN        R
Sbjct: 641 --QLMKDLKRLLRAGGTIVFSNNKRHFKMDLDALNELGLEAKN-----ISNQTLPLDFSR 693

Query: 145 FQNAHETLIWASP 157
            ++ H   I    
Sbjct: 694 NKHIHNCWILTHK 706


>gi|149182645|ref|ZP_01861114.1| methyltransferase [Bacillus sp. SG-1]
 gi|148849668|gb|EDL63849.1| methyltransferase [Bacillus sp. SG-1]
          Length = 310

 Score = 39.2 bits (90), Expect = 0.93,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 4/76 (5%)

Query: 184 WLIPICSGSERLRNKDGEKLH--PTQKPEALLSRILVSSTKPGD--IILDPFFGSGTSGA 239
           W+      +E +  K  +K H   T     L   ++  +    D   ++DP  G GT   
Sbjct: 132 WVFGEYVKNEAVWLKHQQKPHNYSTALSTRLARAVVNIAAPDPDGKKVIDPCCGIGTVLI 191

Query: 240 VAKKLRRSFIGIEMKQ 255
            A  +    +G ++  
Sbjct: 192 EALSMGMDIVGSDINP 207


>gi|57505835|ref|ZP_00371760.1| type IIS restriction enzyme M2 protein (mod) [Campylobacter
           upsaliensis RM3195]
 gi|57015865|gb|EAL52654.1| type IIS restriction enzyme M2 protein (mod) [Campylobacter
           upsaliensis RM3195]
          Length = 118

 Score = 39.2 bits (90), Expect = 0.93,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 32  LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS-SFEAYDAFTRAWLL 90
           + ++   SVDLI   PPY    +       +    AV      F  S+   + F      
Sbjct: 28  MSEVSECSVDLIITSPPYFNIKDYSKDGYQNVKHSAVAGGGGGFRQSYRLQNLFYAQNTS 87

Query: 91  ACRRVLKPNG 100
               +   +G
Sbjct: 88  EFITIYVKDG 97


>gi|332308275|ref|YP_004436126.1| methyltransferase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175604|gb|AEE24858.1| methyltransferase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 194

 Score = 39.2 bits (90), Expect = 0.94,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 6/51 (11%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
           Q+N + +   ++S      K++ G+++S L++L  +  DL+F DPP+N  L
Sbjct: 95  QQNLITLKATEDSA-----KVLCGDALSYLKQLNVE-FDLLFLDPPFNQNL 139


>gi|317497450|ref|ZP_07955770.1| methyltransferase domain-containing protein [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|291559334|emb|CBL38134.1| Predicted O-methyltransferase [butyrate-producing bacterium SSC/2]
 gi|316895236|gb|EFV17398.1| methyltransferase domain-containing protein [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 220

 Score = 39.2 bits (90), Expect = 0.94,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 5/48 (10%)

Query: 3   QKNSLAINENQNSIF----EWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
           ++N   I + + +I     E +  +++G++I +L+ L   S DLIF D
Sbjct: 85  ERNEKRIKKAKENIKNQGKEEQITLLEGDAIEILKGL-DGSFDLIFVD 131


>gi|289435394|ref|YP_003465266.1| methyltransferase, putative [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171638|emb|CBH28184.1| methyltransferase, putative [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 185

 Score = 39.2 bits (90), Expect = 0.94,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 43/140 (30%), Gaps = 7/140 (5%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDY 257
            G    PT          ++     GD++LD F GSG  G  A        + I+  Q  
Sbjct: 17  PGNNTRPTTDKVKESLFSIIGPFFDGDVVLDLFAGSGGLGIEALSRGAERAVFIDQAQAA 76

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL------LVERGLIQPGQILTNAQGN 311
           I      + S       E+     +R    +  N        ++    +        Q  
Sbjct: 77  IKTIRLNLESCHFTDRAEVYRNEAERALKLLHKNEWKFDLVFLDPPYKKQQLEKLLLQLE 136

Query: 312 ISATVCADGTLISGTELGSI 331
             A V  +G +I   +  +I
Sbjct: 137 KLALVSENGRIICEHDKEAI 156


>gi|289434753|ref|YP_003464625.1| ribosomal protein L11 methyltransferase [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289170997|emb|CBH27539.1| ribosomal protein L11 methyltransferase [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 314

 Score = 39.2 bits (90), Expect = 0.94,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 16/170 (9%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKD-----GEKLHPTQKPEALLSRILVSST 221
            Y       + + +   W     S +E +   D     G   HPT     L  R L    
Sbjct: 116 KYYHPVQITDRITIVPSWESYTPSANEIIIELDPGMAFGTGTHPTT---QLCIRALSDYM 172

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATK--RIASVQPLGNIELTV 278
           +PGD ++D   GSG     + KL    I   ++ +  I  A +  R+     +  ++   
Sbjct: 173 QPGDQLIDVGTGSGVLSIASAKLGAKSILATDLDEVAIRAAEENIRLNKTDAIITVKQNN 232

Query: 279 LTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTEL 328
           L     +  V    +V   ++    +L      + A +   G  I+   +
Sbjct: 233 LLQDINQTNV---DIVVANILAEVILLFPED--VFAALKPGGIFIASGII 277


>gi|52142129|ref|YP_084700.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus
           E33L]
 gi|228986492|ref|ZP_04146628.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|51975598|gb|AAU17148.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus
           E33L]
 gi|228773313|gb|EEM21743.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 390

 Score = 39.2 bits (90), Expect = 0.94,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 77/214 (35%), Gaps = 12/214 (5%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
            + S    +K    +  A      +   +  WL    + S      + + L   Q    +
Sbjct: 96  YFKSKWNFSKQKNKDDIAHHYDIGNDFYKL-WLDETMTYSCAYFQNEQDSLTTAQ-HNKV 153

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
              +   + + GD +LD   G G    A AK+     +G+ + ++     ++RI   + L
Sbjct: 154 NHILKKLNLQKGDTLLDIGCGWGELITAAAKQYGVKAMGVTLSEEQYAKTSERIKQ-EGL 212

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLI-QPGQILTNAQGNISATVCADGTLISGTELGS 330
            ++    L   R      F+ +V  G+I   G+            +  DG +        
Sbjct: 213 TDLVEVSLLDYRDIKNRKFDKIVSVGMIEHVGKDNITQYFETVNALLNDGGISL------ 266

Query: 331 IHRVGAKVSGSETCNGWNFWYFEKLGELHSINTL 364
           +H + +  +G  T NGW   Y    G + ++N L
Sbjct: 267 LHCITSPANGGAT-NGWIEKYIFPGGYVPAVNEL 299


>gi|256841878|ref|ZP_05547384.1| adenine-specific DNA methylase [Parabacteroides sp. D13]
 gi|262384196|ref|ZP_06077332.1| adenine-specific DNA methylase [Bacteroides sp. 2_1_33B]
 gi|256736772|gb|EEU50100.1| adenine-specific DNA methylase [Parabacteroides sp. D13]
 gi|262295094|gb|EEY83026.1| adenine-specific DNA methylase [Bacteroides sp. 2_1_33B]
          Length = 414

 Score = 39.2 bits (90), Expect = 0.95,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 4/51 (7%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           +   SVD++   PPY        Y           + W  F + +  D   
Sbjct: 238 IQPNSVDMVVTSPPYGDSRTTVAYGQ----FSRWANEWFNFENAKTLDNLL 284



 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 204 HPTQKPEALLSRILVSSTKPGDI--ILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +P      +   ++        +  + DP+ GSGTS   A     + IG ++  
Sbjct: 27  YPAMMIPQVARALIEEYKPEDGVELLFDPYMGSGTSLVEASIKGINAIGTDLNP 80


>gi|217967096|ref|YP_002352602.1| RNA methyltransferase, TrmA family [Dictyoglomus turgidum DSM 6724]
 gi|217336195|gb|ACK41988.1| RNA methyltransferase, TrmA family [Dictyoglomus turgidum DSM 6724]
          Length = 448

 Score = 39.2 bits (90), Expect = 0.95,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 10/103 (9%)

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK--RIAS 267
           E L ++ L   +    ++ D + G GT      K      GIE+++  I+ A K  RI  
Sbjct: 288 EKLYNKALEYLSPNSKLVFDAYCGIGTISLFLSKKAEKVYGIEVERSAIEDAWKNARINK 347

Query: 268 VQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQG 310
           V+   N+E      +   PR     L+E G I    +L   + 
Sbjct: 348 VK---NVEFIWGRSEEVIPR-----LIEDGKIPDAIVLDPPRK 382


>gi|217960818|ref|YP_002339382.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus
           AH187]
 gi|229140021|ref|ZP_04268584.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus
           BDRD-ST26]
 gi|217064112|gb|ACJ78362.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus
           AH187]
 gi|228643427|gb|EEK99695.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus
           BDRD-ST26]
          Length = 390

 Score = 39.2 bits (90), Expect = 0.95,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 77/214 (35%), Gaps = 12/214 (5%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
            + S    +K    +  A      +   +  WL    + S      + + L   Q    +
Sbjct: 96  YFKSKWNFSKQKNKDDIAHHYDIGNDFYKL-WLDETMTYSCAYFQNEQDSLTTAQ-HNKV 153

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
              +   + + GD +LD   G G    A A++     +G+ + ++     ++RI   + L
Sbjct: 154 NHILKKLNLQKGDTLLDIGCGWGELITAAAEQYGVKAMGVTLSEEQYAKTSERIKQ-EGL 212

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLI-QPGQILTNAQGNISATVCADGTLISGTELGS 330
            ++    L   R      F+ +V  G+I   G+            +  DG +        
Sbjct: 213 TDLVEVSLLDYRDIKNRKFDKIVSVGMIEHVGKDNITQYFETVNALLNDGGISL------ 266

Query: 331 IHRVGAKVSGSETCNGWNFWYFEKLGELHSINTL 364
           +H + +  +G  T NGW   Y    G + ++N L
Sbjct: 267 LHCITSPANGGAT-NGWIEKYIFPGGYVPAVNEL 299


>gi|3211755|gb|AAC23743.1| unknown [Streptococcus pneumoniae]
          Length = 92

 Score = 39.2 bits (90), Expect = 0.95,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 31/81 (38%)

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
               L  C+RVLK +G+++V         I  +L N+    +       +    +   + 
Sbjct: 1   MSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGADMFQSEIIWNYKRWSNSKKG 60

Query: 145 FQNAHETLIWASPSPKAKGYT 165
             N H+ + + S S   K  T
Sbjct: 61  LLNNHQNIYFYSKSKDFKFNT 81


>gi|327311587|ref|YP_004338484.1| putative DNA methylase [Thermoproteus uzoniensis 768-20]
 gi|326948066|gb|AEA13172.1| putative DNA methylase [Thermoproteus uzoniensis 768-20]
          Length = 1000

 Score = 39.2 bits (90), Expect = 0.96,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 15  SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY 49
           S    K K++  ++  +   L  +  DLI  DPPY
Sbjct: 569 SSDNSKAKVLLDDASELYR-LGGEKFDLIVTDPPY 602


>gi|306835970|ref|ZP_07468962.1| RsmD family RNA methyltransferase [Corynebacterium accolens ATCC
           49726]
 gi|304568136|gb|EFM43709.1| RsmD family RNA methyltransferase [Corynebacterium accolens ATCC
           49726]
          Length = 200

 Score = 39.2 bits (90), Expect = 0.96,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 37/126 (29%), Gaps = 22/126 (17%)

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYIDIATKRIASV 268
           E L S +      PG  +LD F GSG  G  A        + +E     + I    I  V
Sbjct: 30  EGLFSSLNARWGFPGSKVLDLFAGSGALGLEALSRGADEAVLVESNPAAVSIIKHNIGVV 89

Query: 269 QPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTEL 328
           +           G R E R            +    L +A       V AD         
Sbjct: 90  KH---------PGARVEER------------KVSTYLASAPRGYFDLVLADPPYAFDDVA 128

Query: 329 GSIHRV 334
           G I  +
Sbjct: 129 GLIAAI 134


>gi|323527388|ref|YP_004229541.1| 50S ribosomal protein L11 methyltransferase [Burkholderia sp.
           CCGE1001]
 gi|323384390|gb|ADX56481.1| ribosomal protein L11 methyltransferase [Burkholderia sp. CCGE1001]
          Length = 300

 Score = 39.2 bits (90), Expect = 0.96,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 57/143 (39%), Gaps = 16/143 (11%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYI 258
           G   HPT +   L    L  + +PG  +LD   GSG    +AKK     + G+++    +
Sbjct: 145 GTGSHPTTR---LCMEWLEQAVQPGQSVLDYGCGSGILAILAKKCGADPVFGVDIDPQAV 201

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + A  R  S +    +   +       P   F ++V   L  P +++ +    +S+ V  
Sbjct: 202 ESA--RHNSERNRAEVTYGLPD---ACPAGEFEIVVANILSNPLKLMASM---LSSKVKP 253

Query: 319 DGTLISGTELGS----IHRVGAK 337
            G +     L      + +V A+
Sbjct: 254 GGRIALSGILARQADEVAQVYAR 276


>gi|227356755|ref|ZP_03841140.1| 23S rRNA (uracil-5-)-methyltransferase [Proteus mirabilis ATCC
           29906]
 gi|227163045|gb|EEI47980.1| 23S rRNA (uracil-5-)-methyltransferase [Proteus mirabilis ATCC
           29906]
          Length = 377

 Score = 39.2 bits (90), Expect = 0.96,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            D F GSG  G    +     IGIE+  + I+ A  R+++ +
Sbjct: 238 WDLFCGSGGFGLHCAQKNTELIGIEISPEAIECA--RLSANE 277


>gi|297157209|gb|ADI06921.1| hypothetical protein SBI_03800 [Streptomyces bingchenggensis BCW-1]
          Length = 448

 Score = 39.2 bits (90), Expect = 0.96,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 9/87 (10%)

Query: 291 NLLVERGLIQPGQILTNAQGN----ISATVCADGT--LISGTELGSIHRVGAKVSGSETC 344
             L+E G +  G  LT  +        A + A+G   L  G    S  R      G  + 
Sbjct: 4   GDLLEAGYLNAGAKLTFERPRRGEKHHAELAANGKVQLSDGQLFRSPSRAAIAAVGGGSF 63

Query: 345 NGWNFWYFEKLGELHSINTLRILVRKE 371
           +GW+ W  +    L   + LR  +  E
Sbjct: 64  DGWHAWTLDDGRTL---DQLRQQLLDE 87


>gi|241151395|ref|XP_002406663.1| methyltransferase, putative [Ixodes scapularis]
 gi|215493875|gb|EEC03516.1| methyltransferase, putative [Ixodes scapularis]
          Length = 287

 Score = 39.2 bits (90), Expect = 0.96,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 211 ALLSRILVSSTKPGD---IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           A+  R +     P D    ILD   GSG SG V ++    ++G+++ Q  +++A +R
Sbjct: 35  AMSERAIELLALPEDECHFILDLGCGSGLSGDVLEEQGHVWVGVDISQAMLNVALER 91


>gi|118442901|ref|YP_878344.1| O-methyltransferase family [Clostridium novyi NT]
 gi|118133357|gb|ABK60401.1| O-methyltransferase family, putative [Clostridium novyi NT]
          Length = 218

 Score = 39.2 bits (90), Expect = 0.96,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 27/48 (56%), Gaps = 5/48 (10%)

Query: 3   QKNSLAINENQNSIFEW----KDKIIKGNSISVLEKLPAKSVDLIFAD 46
           +++   IN  +++I ++    K  I++G+ + +L  +  +  D+IF D
Sbjct: 87  ERDENMINIAKDNIKKYGFDKKINILQGDCLEILPTINEE-FDMIFMD 133


>gi|116329264|ref|YP_798984.1| methylase of polypeptide chain release factors [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116122008|gb|ABJ80051.1| Methylase of polypeptide chain release factors [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
          Length = 286

 Score = 39.2 bits (90), Expect = 0.96,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 12/90 (13%)

Query: 22  KII-KGNSISVLEK-----LPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           +II +GN+I  LE      +P +S  DLI  +PPY + ++ +       + D V      
Sbjct: 163 QIIGEGNNIQFLESNLFLSIPKESEFDLIVTNPPY-IPISDKT----EMMKDVVDYEPHL 217

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
               E    F    +   R  LK  G  ++
Sbjct: 218 ALFLEDPKEFLSKLIEDARIHLKEGGKFYM 247


>gi|316976647|gb|EFV59894.1| tRNA guanosine-2'-O-methyltransferase TRM11-like protein
           [Trichinella spiralis]
          Length = 647

 Score = 39.2 bits (90), Expect = 0.97,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           D++LDP+ GSG+    A       +G+E+ 
Sbjct: 231 DLVLDPYVGSGSILLPAAHFGGYCVGVEID 260


>gi|317153229|ref|YP_004121277.1| ribosomal L11 methyltransferase [Desulfovibrio aespoeensis Aspo-2]
 gi|316943480|gb|ADU62531.1| ribosomal L11 methyltransferase [Desulfovibrio aespoeensis Aspo-2]
          Length = 291

 Score = 39.2 bits (90), Expect = 0.97,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 3/101 (2%)

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
           LD   GSG  G    KL  + IG+++    I+ A +   +     ++   V +    EP 
Sbjct: 152 LDLGTGSGILGIGLCKLGLTGIGLDIDPQAIECARENAEANAVAQSMRCAVGSIDFLEPE 211

Query: 288 VAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTEL 328
             FN++V    I  G  L     +I   V   G+LI    L
Sbjct: 212 AVFNIVVAN--ILSGP-LIEMARDILLHVRPGGSLILSGIL 249


>gi|262375890|ref|ZP_06069121.1| methyltransferase [Acinetobacter lwoffii SH145]
 gi|262308984|gb|EEY90116.1| methyltransferase [Acinetobacter lwoffii SH145]
          Length = 222

 Score = 39.2 bits (90), Expect = 0.97,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 22/140 (15%)

Query: 184 WLIPICSGSE--------RLRNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGS 234
           WLIP    ++        R+ N     +       A+   +L       D ++LD   GS
Sbjct: 40  WLIPPVFPTDKLDDEVIRRIWNDTPYWIFCWASGLAMAQWLLAEPHHVKDKVVLDFGAGS 99

Query: 235 GTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
           G     AK    +  I  ++ Q  +D       +   L ++EL  L       +V     
Sbjct: 100 GVVAIAAKMAGAKRVICCDIDQVSLDACR----ANAELNDVELEYLDDLYKAEKVD---- 151

Query: 294 VERGLIQPGQILTNAQGNIS 313
               ++    +L +      
Sbjct: 152 ----ILLAADVLYDQCNRFF 167


>gi|262039996|ref|ZP_06013261.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259042664|gb|EEW43670.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 701

 Score = 39.2 bits (90), Expect = 0.97,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 34/107 (31%), Gaps = 20/107 (18%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++I+ + +  L +   +  DLIF DPP         +     + DA     D       
Sbjct: 590 HRLIQADVLGWLRE-STEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHIR---- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
                   +   +R+L+  GT+    +          L  L   +  
Sbjct: 637 -------LMTDLKRLLRKGGTIMFSNNKRGFRMDHDGLAALGLKVQE 676


>gi|238854674|ref|ZP_04645004.1| ribosomal protein L11 methyltransferase [Lactobacillus jensenii
           269-3]
 gi|260664383|ref|ZP_05865235.1| ribosomal protein L11 methyltransferase [Lactobacillus jensenii
           SJ-7A-US]
 gi|282932935|ref|ZP_06338332.1| ribosomal protein L11 methyltransferase [Lactobacillus jensenii
           208-1]
 gi|238832464|gb|EEQ24771.1| ribosomal protein L11 methyltransferase [Lactobacillus jensenii
           269-3]
 gi|260561448|gb|EEX27420.1| ribosomal protein L11 methyltransferase [Lactobacillus jensenii
           SJ-7A-US]
 gi|281302970|gb|EFA95175.1| ribosomal protein L11 methyltransferase [Lactobacillus jensenii
           208-1]
          Length = 314

 Score = 39.2 bits (90), Expect = 0.97,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 54/151 (35%), Gaps = 9/151 (5%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATKRIASVQP 270
           L+   L  S      +LD   GSG     A KL    +   ++  + +  A + IA +  
Sbjct: 165 LVMMALERSLTKPVKVLDVGTGSGILAIAASKLGAKSVLATDISDEAVTAANENIA-LNK 223

Query: 271 LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGS 330
           L NIE+      +         L+   ++   +IL +   ++   +  +G +I       
Sbjct: 224 LNNIEVIKANLLKDVD--GKFDLILANIL--AEILFDLIPDLDKHLAPNGKVIFSGID-- 277

Query: 331 IHRVGAKVSGSETCNGWNFWYFEKLGELHSI 361
            +    KV      NG++     + G    +
Sbjct: 278 -YLQAEKVKQRLADNGFSVKTTMQEGRWVCL 307


>gi|209559986|ref|YP_002286458.1| DNA N-4 cytosine methyltransferase M.NgoMXV [Streptococcus pyogenes
           NZ131]
 gi|209541187|gb|ACI61763.1| DNA N-4 cytosine methyltransferase M.NgoMXV [Streptococcus pyogenes
           NZ131]
          Length = 161

 Score = 39.2 bits (90), Expect = 0.97,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 21/103 (20%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
            IN N + I +++D          +    + S +L+  DPP +L+  GQ     +S++ A
Sbjct: 41  KINVNPDVIGDFRD----------MP-FESNSFNLVVFDPP-HLKYVGQ-----NSIMKA 83

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
                DK    E +          C RVLK  GTL    S   
Sbjct: 84  QYGQLDK----ENWKEDISKGFEECMRVLKVGGTLVFKWSDCQ 122


>gi|242238749|ref|YP_002986930.1| hypothetical protein Dd703_1306 [Dickeya dadantii Ech703]
 gi|242130806|gb|ACS85108.1| hypothetical protein Dd703_1306 [Dickeya dadantii Ech703]
          Length = 414

 Score = 39.2 bits (90), Expect = 0.98,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
             L+  +++  T+ G  ILDPF G+ T+G  + +     +  ++  
Sbjct: 34  VKLVEELIL-HTEKGKKILDPFSGTATTGLCSLEQGYDALLCDINP 78


>gi|229825961|ref|ZP_04452030.1| hypothetical protein GCWU000182_01325 [Abiotrophia defectiva ATCC
           49176]
 gi|229789833|gb|EEP25947.1| hypothetical protein GCWU000182_01325 [Abiotrophia defectiva ATCC
           49176]
          Length = 711

 Score = 39.2 bits (90), Expect = 0.98,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 83/237 (35%), Gaps = 29/237 (12%)

Query: 6   SLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV 65
            L + + ++++ E  +     ++  ++ ++     DL++ DPPYN     + Y   + L+
Sbjct: 242 ELYVPKPESNLNEN-NVCYNMDTNKLVPEIE---ADLVYIDPPYNS----RQYCDAYHLL 293

Query: 66  DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
           + V   W+K   F       R  L                 S +   +     +NL   I
Sbjct: 294 ENVA-RWNKPEVFGVAKKMDRTDLK----------------SDYCTSKATASFENLISSI 336

Query: 126 LNDIVWRKSNPMPNFRGRRFQ---NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
               +    N M N    R     +  + +       + K +  +Y A      D++   
Sbjct: 337 HAKYILLSYNDMANKGNDRSNAKISDEDIMRILRKKGEVKVFAEDYKAFSTGKSDIKTNQ 396

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
           + L      +E+        L+ T     LLS+IL    K  D ++D F G    G 
Sbjct: 397 ERLFLCICSNEKKEVIPS-ALNYTGGKYKLLSQILPLFPKNIDKMVDLFCGGCNVGI 452


>gi|149174417|ref|ZP_01853043.1| type II adenine specific methyltransferase [Planctomyces maris DSM
           8797]
 gi|148846527|gb|EDL60864.1| type II adenine specific methyltransferase [Planctomyces maris DSM
           8797]
          Length = 549

 Score = 39.2 bits (90), Expect = 0.98,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 3/41 (7%)

Query: 228 LDPFFGSGTSGAVAKKLRR---SFIGIEMKQDYIDIATKRI 265
            DP  GSG     A +      +  G ++    + I  +R+
Sbjct: 144 CDPCCGSGNFILAALEQGFTAENIFGFDIDPVAVAITRRRL 184


>gi|68076773|ref|XP_680306.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56501220|emb|CAH93995.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 480

 Score = 39.2 bits (90), Expect = 0.98,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 54/197 (27%), Gaps = 6/197 (3%)

Query: 64  LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY---HNIFRIGTMLQN 120
           L+  V + W +  ++    A  +A        L      +   +Y    N       +  
Sbjct: 78  LIKGVIEIWGEGYTYNELLANLKAKNDLFESTLNNKKWCFHFHAYGKIINQEEKVKKMDM 137

Query: 121 LNFWILNDIVWRKSNPMPNFR--GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
            N ++         NP           + +   L                +     N+  
Sbjct: 138 FNIYVEKYKNIDILNPHVQLAIFEEYDKESKGILNKIYFGKCIALRNNKKECDNCNNDVN 197

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL-LSRILVSSTKPGDIILDPFFGSGTS 237
           + +        +            L PT     L      ++  K GDI+LDPF GSG  
Sbjct: 198 EKKKVENNNRKTWWAHYALNKRRILGPTTTDNELAFIMCNIAKIKKGDIVLDPFVGSGGL 257

Query: 238 GAVAKKLRRSFIGIEMK 254
              +       IG ++ 
Sbjct: 258 LIASSVFNAICIGNDID 274


>gi|302337119|ref|YP_003802325.1| rRNA (guanine-N(2)-)-methyltransferase [Spirochaeta smaragdinae DSM
           11293]
 gi|301634304|gb|ADK79731.1| rRNA (guanine-N(2)-)-methyltransferase [Spirochaeta smaragdinae DSM
           11293]
          Length = 714

 Score = 39.2 bits (90), Expect = 0.99,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 23/113 (20%)

Query: 20  KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K ++IK + ++ LE        + DLIF DPP              S    + D++D   
Sbjct: 604 KHRLIKADCLTWLETAAKREHGAYDLIFLDPP------------TFSNSKNMDDTFDVQR 651

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
                  +       C  +L P G L +  +    F +    Q+        I
Sbjct: 652 DHPKLIEW-------CMELLAPGGLL-LFSTNRKGFVLEVKDQDAREITDETI 696


>gi|262165695|ref|ZP_06033432.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio mimicus
           VM223]
 gi|262025411|gb|EEY44079.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio mimicus
           VM223]
          Length = 617

 Score = 39.2 bits (90), Expect = 0.99,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 22/130 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + + I+ + +  L     +  DLIF DPP         +     +        D  +   
Sbjct: 504 QHQYIQADCLQWLANAQGQY-DLIFIDPP--------TFSNSKRMEQTFDVQRDHVT--- 551

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                    +   +R+L+P GT+    +  +       LQ L   +    +  ++ PM  
Sbjct: 552 --------LMTNLKRLLRPEGTIVFSNNKRHFKMDLEALQAL--ELNAQNISHQTLPMDF 601

Query: 140 FRGRRFQNAH 149
            R ++  N  
Sbjct: 602 ERNKQIHNCW 611


>gi|149237845|ref|XP_001524799.1| hypothetical protein LELG_03831 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146451396|gb|EDK45652.1| hypothetical protein LELG_03831 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 270

 Score = 39.2 bits (90), Expect = 0.99,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 26/61 (42%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           H   K       +L   ++    ILD   GSG SG +  +   +++G+++    +  A  
Sbjct: 30  HIQAKMTLRALELLNLDSEQPHFILDLGCGSGLSGEILTEEGYNWVGMDISPSMLATALD 89

Query: 264 R 264
           R
Sbjct: 90  R 90


>gi|315426479|dbj|BAJ48111.1| methyltransferase [Candidatus Caldiarchaeum subterraneum]
 gi|315426518|dbj|BAJ48149.1| methyltransferase [Candidatus Caldiarchaeum subterraneum]
          Length = 338

 Score = 39.2 bits (90), Expect = 1.00,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILV--SSTKPGDIILDPFFGSGTSGAVAKKL 244
           P    SER       ++    +P+  L+R LV  +    G  +LDPF GSG     A  L
Sbjct: 152 PKHYFSERKAGNRPFRIPSAMQPK--LARCLVNLAINSRGSKVLDPFAGSGALVIEAGLL 209

Query: 245 RRSFIGIEM 253
               +G+E+
Sbjct: 210 GHVCLGVEV 218


>gi|293609971|ref|ZP_06692273.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828423|gb|EFF86786.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 222

 Score = 39.2 bits (90), Expect = 1.00,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 184 WLIPICSGSERL--------RNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGS 234
           WLIP    ++RL         N     +       A+   +L       D ++LD   GS
Sbjct: 40  WLIPPVFPTDRLDDEVIRRIWNDTPYWIFCWASGLAMAQWLLAEPDHVKDKVVLDFGAGS 99

Query: 235 GTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           G     AK    +  I  ++ Q  ++   +
Sbjct: 100 GVVAIAAKMAGAKRVICCDIDQVSLNACRE 129


>gi|290343563|ref|YP_003494930.1| hypothetical protein OTV1_091 [Ostreococcus tauri virus 1]
 gi|260160978|emb|CAY39679.1| hypothetical protein OTV1_091 [Ostreococcus tauri virus 1]
          Length = 341

 Score = 39.2 bits (90), Expect = 1.00,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 42/144 (29%), Gaps = 17/144 (11%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH-----------SLVDAVTDSWDK- 74
           ++   L  LP   VDLI+ DPPYN    G  Y   +           S V  +   W+K 
Sbjct: 201 DACDFLRDLP--QVDLIYLDPPYNQHPYGSNYFMLNLICTNERPHTVSKVSGIPGDWNKS 258

Query: 75  -FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
            ++S           L       K     +    +        +L+   +      +   
Sbjct: 259 QYNSKGKIREAMELTLRLATEKAKHTLVSYNNEGFIKPDEWEEILRP--YTYEKIEIDYS 316

Query: 134 SNPMPNFRGRRFQNAHETLIWASP 157
                  R  R     E L   SP
Sbjct: 317 CYKGGRNRKNRPTKVTEFLFIISP 340


>gi|257885935|ref|ZP_05665588.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
 gi|257821791|gb|EEV48921.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
          Length = 906

 Score = 39.2 bits (90), Expect = 1.00,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 27/51 (52%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           T+ P   +   L+  TKPGDI+ D F G+G +G  +  +      +E+K D
Sbjct: 119 TKVPYKAIMSYLLHYTKPGDIVYDAFSGTGMTGVASSLMNNKEELLEIKPD 169



 Score = 36.9 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 12/80 (15%)

Query: 33  EKLPAKSVDLIFADPPYNLQLNGQLYR----------PDHSLVDAVTDSWDKFSSFEAYD 82
            +L   SVD IF DPP+   ++                + S    + DS +K      Y 
Sbjct: 471 NELQENSVDYIFTDPPFGENIDYSELNFLWESWLKVFTNSSSEAIINDSQNK--GLFEYK 528

Query: 83  AFTRAWLLACRRVLKPNGTL 102
                      +VLKPN  +
Sbjct: 529 QLMEESFRNYFKVLKPNHWI 548


>gi|54026417|ref|YP_120659.1| hypothetical protein nfa44440 [Nocardia farcinica IFM 10152]
 gi|54017925|dbj|BAD59295.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 938

 Score = 39.2 bits (90), Expect = 1.00,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           IL S+      ILDPF G GT    A++L       ++    + +  K +  + P    +
Sbjct: 105 ILKSTDGNPPPILDPFAGGGTIPLEAQRLGLEAHASDLNPVAV-LINKALIEIPPKFRDQ 163

Query: 276 LTVLTG 281
             V  G
Sbjct: 164 PPVSPG 169


>gi|242088363|ref|XP_002440014.1| hypothetical protein SORBIDRAFT_09g024440 [Sorghum bicolor]
 gi|241945299|gb|EES18444.1| hypothetical protein SORBIDRAFT_09g024440 [Sorghum bicolor]
          Length = 401

 Score = 39.2 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT K   L    L    K G+ +LD   G+G  G  A K+      GI++    I
Sbjct: 219 GMGEHPTTK---LCLLFLREVIKGGERVLDYGTGTGVLGIAALKMGATQSTGIDIDPQAI 275

Query: 259 DIATKRI 265
             A++ +
Sbjct: 276 TSASENL 282


>gi|225420025|ref|ZP_03762328.1| hypothetical protein CLOSTASPAR_06368 [Clostridium asparagiforme
           DSM 15981]
 gi|225041281|gb|EEG51527.1| hypothetical protein CLOSTASPAR_06368 [Clostridium asparagiforme
           DSM 15981]
          Length = 502

 Score = 39.2 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 46/111 (41%), Gaps = 4/111 (3%)

Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSSTK 222
           T NY+      E+   + + +I + +  +       + +  + +P   AL + +     K
Sbjct: 292 TENYEFELRLIENKLGKCNIMIKLFTLKDMRFTYRRDVIPTSIRPVNAALTAALAREYMK 351

Query: 223 PGDIILDPFFGSGTSGAVAKKLRR--SFIGIEMKQDYIDIATKRIASVQPL 271
               +LDPF G GT      K  R  +  GI++ ++ I  A +   + + +
Sbjct: 352 EDAQVLDPFCGVGTMLIERHKAVRANTSYGIDILEEAILKARENAEAAKQV 402


>gi|206969854|ref|ZP_03230808.1| ribosomal protein L11 methyltransferase [Bacillus cereus AH1134]
 gi|206735542|gb|EDZ52710.1| ribosomal protein L11 methyltransferase [Bacillus cereus AH1134]
          Length = 312

 Score = 39.2 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 61/172 (35%), Gaps = 18/172 (10%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD-----GEKLHPTQKPEALLS 214
            A  +   Y  ++ ++    + +       S +E++   D     G   HPT     +  
Sbjct: 110 WATAWKKYYHPVQISDTFTIVPTWEEYTPSSPNEKIIELDPGMAFGTGTHPTTT---MCI 166

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATK--RIASVQPL 271
           R L  + +PGD I+D   GSG     A KL  S +   ++    ++ A    R+     +
Sbjct: 167 RALEKTVQPGDTIIDVGTGSGVLSIAAAKLGASSVQAYDLDPVAVESAEMNVRLNKTDDI 226

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
            ++    L      P      L+   L+    +L       +A V   G L 
Sbjct: 227 VSVGQNSLLEGIEGPV----DLIVANLLAEIILLFPED---AARVVKSGGLF 271


>gi|154493884|ref|ZP_02033204.1| hypothetical protein PARMER_03228 [Parabacteroides merdae ATCC
           43184]
 gi|154086144|gb|EDN85189.1| hypothetical protein PARMER_03228 [Parabacteroides merdae ATCC
           43184]
          Length = 185

 Score = 39.2 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ 52
            +I+G+    L   P +  D IFADPPY L+
Sbjct: 95  TLIRGDVFRYLHSAPTQGFDFIFADPPYALK 125


>gi|146304552|ref|YP_001191868.1| putative RNA methylase [Metallosphaera sedula DSM 5348]
 gi|145702802|gb|ABP95944.1| putative RNA methylase [Metallosphaera sedula DSM 5348]
          Length = 304

 Score = 39.2 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           SR++V+  +P   +LDPF G G+    A+ L    +G+++    I  A 
Sbjct: 151 SRLMVNLARPR-RVLDPFAGLGSILIEAEWLGYRAVGLDVDLKMIGKAK 198


>gi|284050618|ref|ZP_06380828.1| putative RNA methylase [Arthrospira platensis str. Paraca]
 gi|291568786|dbj|BAI91058.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 162

 Score = 39.2 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 207 QKPEALLSRILVSS-TKPGDIILDPFFGSGTSGAVA-KKLRRSFIGIEMKQDYIDIATK 263
             P+ LL  +L        D++ D   G G     A +K     +GI++  D I  AT+
Sbjct: 12  PTPQDLLEDVLRWVKVGADDVVYDLGCGDGRVAIAAAEKFGARGVGIDIDPDRIKEATE 70


>gi|194743660|ref|XP_001954318.1| GF18217 [Drosophila ananassae]
 gi|190627355|gb|EDV42879.1| GF18217 [Drosophila ananassae]
          Length = 486

 Score = 39.2 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 3/78 (3%)

Query: 39  SVDLIFADPPYNLQ-LNGQLYRPDHSLVDAVTDSWDKFSSFEAY--DAFTRAWLLACRRV 95
           S D I  DPPY ++    ++    +S     TD    + S   Y   +     L    + 
Sbjct: 301 SFDCIITDPPYGIREATEKVDAKANSKDSTRTDDMVHYPSTSHYSLQSLYGDLLEFAAKH 360

Query: 96  LKPNGTLWVIGSYHNIFR 113
           L+  G L     +H    
Sbjct: 361 LRLGGRLVCWLPFHREDY 378



 Score = 37.7 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 19/37 (51%)

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            +  + GD++ DPF G+G+    A K     +G ++ 
Sbjct: 210 QAMVQEGDLVFDPFVGTGSLLVSAAKWGGYVLGADID 246


>gi|304560221|gb|ADM42885.1| hypothetical protein ETAF_2783 [Edwardsiella tarda FL6-60]
          Length = 379

 Score = 39.2 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 5/97 (5%)

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL---LSRILVSSTKP--GDIILDPF 231
               +    +P  SG    RN              L   ++R L+ +  P     ILD F
Sbjct: 8   KKWEQFKKELPHQSGEMVKRNWGHNWHSMCSYQGKLKPSIARSLIDTFMPSSKGRILDVF 67

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            G GT    A+ L  +  G ++    ++I+  ++  +
Sbjct: 68  SGVGTIPFEARLLGHTAYGFDISPAAVNISRAKLEVI 104


>gi|14590965|ref|NP_143040.1| RNA methyltransferase [Pyrococcus horikoshii OT3]
 gi|50401321|sp|O58864|Y1137_PYRHO RecName: Full=Uncharacterized RNA methyltransferase PH1137
 gi|3257554|dbj|BAA30237.1| 407aa long hypothetical RNA methyltransferase [Pyrococcus
           horikoshii OT3]
          Length = 407

 Score = 39.2 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 43/113 (38%), Gaps = 9/113 (7%)

Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
           T I+ S +      ++         E +  + D +I +   +   +    + ++  +K  
Sbjct: 208 TSIYWSVNRTKSDVSYGEVESVWGREFITEKLDDVIYLIHPNSFFQTNSYQAVNLVKKVS 267

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
            L+          G+ +LD + G GT G    K     +G +  +  I++A K
Sbjct: 268 ELV---------EGERVLDMYSGVGTFGIYLAKRGFKVVGFDSNEFAIEMARK 311


>gi|89514481|gb|ABD75113.1| BstYI methyltransferase [Sinorhizobium saheli]
          Length = 69

 Score = 39.2 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 7/54 (12%)

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIA-------SVQPLGNIELTVLTGKR 283
           +G  A      F+G ++ ++Y  IA  R          V+PL           +
Sbjct: 1   TGIAAALDGCRFLGADVNEEYCKIAQNRYEMLLDQKLQVRPLDKPVYEPNPRSK 54


>gi|306828376|ref|ZP_07461619.1| phage methyltransferase [Streptococcus pyogenes ATCC 10782]
 gi|304429430|gb|EFM32496.1| phage methyltransferase [Streptococcus pyogenes ATCC 10782]
          Length = 158

 Score = 39.2 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 21/103 (20%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
            IN N + I +++D          +    + S +L+  DPP +L+  GQ     +S++ A
Sbjct: 41  KINVNPDVIGDFRD----------MP-FESNSFNLVVFDPP-HLKYVGQ-----NSIMKA 83

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
                DK    E +          C RVLK  GTL    S   
Sbjct: 84  QYGQLDK----ENWKEDISKGFEECMRVLKVGGTLVFKWSDCQ 122


>gi|167464623|ref|ZP_02329712.1| TRNA (uracil-5-)-methyltransferase-related protein [Paenibacillus
           larvae subsp. larvae BRL-230010]
 gi|322381560|ref|ZP_08055534.1| RNA methyltransferase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321154454|gb|EFX46756.1| RNA methyltransferase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 550

 Score = 39.2 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 7/105 (6%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            + ++D + G GT      K  R   G+E+  + I+ A KR A +  + N E      + 
Sbjct: 402 KETVVDAYCGIGTISLFLAKHARKVYGVEIVPEAIEDA-KRNAELNGVSNAEFAAGKAEE 460

Query: 284 TEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTEL 328
             P        +R  ++P  I+ +        V  D  L    E 
Sbjct: 461 VLPG------WQRAGVRPDVIVVDPPRKGCDAVLLDTILRLRPER 499


>gi|164686694|ref|ZP_02210722.1| hypothetical protein CLOBAR_00289 [Clostridium bartlettii DSM
           16795]
 gi|164604084|gb|EDQ97549.1| hypothetical protein CLOBAR_00289 [Clostridium bartlettii DSM
           16795]
          Length = 466

 Score = 39.2 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 223 PGDIILDPFFGSGT-SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
             D + D + G GT S  +A+K +    GIE+ +D I  A KR A +  + N+E  V   
Sbjct: 318 ENDTVFDIYCGIGTISLFLAQKAK-KVYGIEIVEDAIKDA-KRNAKINNMDNVEFYVGKA 375

Query: 282 KRTEPR 287
           +   P+
Sbjct: 376 EEVVPK 381


>gi|86607262|ref|YP_476025.1| methyltransferase [Synechococcus sp. JA-3-3Ab]
 gi|86555804|gb|ABD00762.1| putative methyltransferase [Synechococcus sp. JA-3-3Ab]
          Length = 183

 Score = 39.2 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 40/120 (33%), Gaps = 10/120 (8%)

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
            SG   L+   G    PT          ++     G   LD   G+GT GA A     +F
Sbjct: 5   ISGKRALQTPAGLGTRPTPGRVRQALFNILRGQVEGCRWLDLCCGAGTVGAEALCHGAAF 64

Query: 249 I-GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGL-IQPGQILT 306
           + GIE+      I     A V   G     +    R         L+ RGL + P   + 
Sbjct: 65  VAGIEIAAPACRIIRANWAKVAQPGQSFQVIQGDARK--------LLSRGLGLDPFDYVY 116


>gi|222475697|ref|YP_002564218.1| adenine-specific DNA methylase [Halorubrum lacusprofundi ATCC
           49239]
 gi|222454068|gb|ACM58332.1| adenine-specific DNA methylase [Halorubrum lacusprofundi ATCC
           49239]
          Length = 892

 Score = 39.2 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 21/58 (36%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
           ILDPF G GTS   A +     +G ++      +  K + + Q             + 
Sbjct: 132 ILDPFMGGGTSLVEASRFGAEVVGNDLNPVAWFVTKKELEAGQTDVEELEEAFEQVKE 189


>gi|25143708|ref|NP_491075.2| hypothetical protein Y71F9AL.1 [Caenorhabditis elegans]
 gi|16604224|gb|AAF36002.2| Hypothetical protein Y71F9AL.1 [Caenorhabditis elegans]
          Length = 432

 Score = 39.2 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 9/111 (8%)

Query: 37  AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD---AFTRAWLLACR 93
               D I ADPPY ++   +    +  +    T+ + ++   E YD   AF    L    
Sbjct: 291 NAKFDAIVADPPYGVREKARKTVKNKKV--DTTEEYVQYQQKEEYDLEAAFC-DLLNLSA 347

Query: 94  RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
           R+L  NG +     ++ +       +NL      D++     P+     RR
Sbjct: 348 RLLVINGRISF---WYPVILENYCAENLPNHPAMDLISNCEQPLTRKTSRR 395



 Score = 36.5 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 20/37 (54%)

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           ++   PGDI+LDPF G+G     A +     IG E+ 
Sbjct: 201 LAMISPGDIVLDPFVGTGGLILPAAEFGAFVIGTEIN 237


>gi|302546575|ref|ZP_07298917.1| putative hydrolase, NUDIX family [Streptomyces hygroscopicus ATCC
           53653]
 gi|302464193|gb|EFL27286.1| putative hydrolase, NUDIX family [Streptomyces himastatinicus ATCC
           53653]
          Length = 370

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 13/115 (11%)

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           +R+          +LD   G+G+   +A +      G++      + A  ++        
Sbjct: 36  ARLRQWLPGRPCDVLDLGCGTGSLARLAAEQGHRVTGVDRSPRMAERARAKLVGT----- 90

Query: 274 IELTVLTGKRTEPRVA---FNLLVERGL--IQPGQILTNAQGNISATVCADGTLI 323
            + TVL G    P V    F++ + R L  + PGQ         +  +   G L+
Sbjct: 91  -DATVLVGDAAAPPVEESGFDVFLARHLLWLLPGQEAVL--RRWARLLRPGGALV 142


>gi|297190750|ref|ZP_06908148.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|297150608|gb|EFH30686.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 742

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
            L++R+L S + P  ++LDP  GSG+  A A +  
Sbjct: 186 DLMARLLPS-SPPPSVVLDPACGSGSLLAAAARHG 219


>gi|294650030|ref|ZP_06727418.1| tRNA (guanine-N(7)-)-methyltransferase [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292824123|gb|EFF82938.1| tRNA (guanine-N(7)-)-methyltransferase [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 238

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 23/125 (18%)

Query: 18  EWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           E K+ +++  ++I VL ++P  S+D +            QLY P         D W K  
Sbjct: 111 ELKNLRVLDADAIQVLREMPDNSIDCV------------QLYFP---------DPWQKKR 149

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            F+         +    + L   GT      +         + +    + N      S P
Sbjct: 150 HFKR-RFVIHERMQLVEQKLALGGTFHAATDWEPYAEWMLDVLDNRPNLENLAGKSNSYP 208

Query: 137 MPNFR 141
            P++R
Sbjct: 209 RPDWR 213


>gi|229025778|ref|ZP_04182177.1| Ribosomal protein L11 methyltransferase [Bacillus cereus AH1272]
 gi|228735486|gb|EEL86082.1| Ribosomal protein L11 methyltransferase [Bacillus cereus AH1272]
          Length = 312

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 56/173 (32%), Gaps = 26/173 (15%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-------------HPTQKPEALL 213
           ++             SD    + +  E   +   EK+             HPT     + 
Sbjct: 109 DWATAWKKYYHPVQISDTFTIVPTWEEYTPSSPEEKIIELDPGMAFGTGTHPTTT---MC 165

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATK--RIASVQP 270
            R L  + +PGD ++D   GSG     A KL  S +   ++    ++ A    R+     
Sbjct: 166 IRALEKTVQPGDTVIDVGTGSGVLSIAAAKLGASSVQAYDLDPVAVESAEMNVRLNKTDD 225

Query: 271 LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
           + ++    L      P      L+   L+    +L       +A V   G L 
Sbjct: 226 VVSVGQNSLLEGIEGPV----DLIVANLLAEIILLFPED---AARVVKSGGLF 271


>gi|229171959|ref|ZP_04299524.1| O-antigen biosynthesis protein [Bacillus cereus MM3]
 gi|228611302|gb|EEK68559.1| O-antigen biosynthesis protein [Bacillus cereus MM3]
          Length = 229

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 55/157 (35%), Gaps = 18/157 (11%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L  +  E  +    P  LL  I     +    +LD     G  GA  K+      GIE  
Sbjct: 8   LYEEKSEHYYNAANP-NLLKHIKKEWKE----VLDIGCSGGALGAAIKENGIRVSGIEAF 62

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNAQGNIS 313
            +  + A +R+  V  LG+IE   L  +  +   V F  ++E            A   + 
Sbjct: 63  PEAAEKAKERLDHVI-LGDIEKIDLPYEEEQFDCVIFGDVLEHLFDP-----WAAIEKVK 116

Query: 314 ATVCADGTLISGTELGSIHRVGAKVSGSETCNG-WNF 349
             +  +G +++     SI  V      +    G W +
Sbjct: 117 PYIKENGVILA-----SIPNVAHISVLAPLLAGNWTY 148


>gi|225712514|gb|ACO12103.1| methyltransferase WBSCR22 [Lepeophtheirus salmonis]
          Length = 279

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 207 QKPEALLSRILVSSTKPGDI---ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           Q    +  R +     P D+   I D   GSG SG V ++    +IG+++    +++A +
Sbjct: 33  QIQNDMTERAMELLNLPPDVPCFIGDLGCGSGLSGEVLEENGHFWIGMDISSAMLNVARE 92

Query: 264 R 264
           R
Sbjct: 93  R 93


>gi|195497083|ref|XP_002095951.1| GE25419 [Drosophila yakuba]
 gi|194182052|gb|EDW95663.1| GE25419 [Drosophila yakuba]
          Length = 488

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            +  + GD++ DPF GSG+    A K     +G ++ 
Sbjct: 209 QAMVRKGDLVFDPFVGSGSLLVSAAKWGGYVLGADID 245


>gi|158320270|ref|YP_001512777.1| ribosomal protein L11 methyltransferase [Alkaliphilus oremlandii
           OhILAs]
 gi|166989893|sp|A8MG53|PRMA_ALKOO RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|158140469|gb|ABW18781.1| ribosomal protein L11 methyltransferase [Alkaliphilus oremlandii
           OhILAs]
          Length = 313

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 68/201 (33%), Gaps = 18/201 (8%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSSTKPGD 225
           Y         + ++  W   I    + +   D      T   E   +    L        
Sbjct: 117 YYKPTKIGNKIVIKPTWEEYIAQEGDMVIEMDPGMAFGTGTHETTMMCVEQLEKYISKDT 176

Query: 226 IILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK--RIASVQPLGNIELTVLTGK 282
            + D   GSG    V  KL  +  IG++     + +A +  R   V+ +  I+   L   
Sbjct: 177 TVFDIGTGSGILAIVGAKLGAKKAIGVDFDPVAVTVANENVRANKVENIVEIKQGNLMDV 236

Query: 283 RTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSE 342
            +E       +V   +I   +++     +I + +  +G  IS   +    ++       E
Sbjct: 237 VSE----KADVVVANII--AEVIVILSEDIKSFLNKNGIFISSGIILD--KIDTV---KE 285

Query: 343 T--CNGWNFWYFEKLGELHSI 361
           +   NG    + E +GE  +I
Sbjct: 286 SLVKNGLEVIHVETMGEWAAI 306


>gi|88854621|ref|ZP_01129288.1| hypothetical protein A20C1_10394 [marine actinobacterium PHSC20C1]
 gi|88816429|gb|EAR26284.1| hypothetical protein A20C1_10394 [marine actinobacterium PHSC20C1]
          Length = 947

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 1/66 (1%)

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           I+ S+      ILDPF G GT    A++L       ++    + +  K +  + P     
Sbjct: 122 IMRSTDNNPPAILDPFAGGGTIPLEAQRLGLEAHASDLNPVAV-LINKALIEIPPKFAGR 180

Query: 276 LTVLTG 281
             V   
Sbjct: 181 DPVFPD 186


>gi|113475788|ref|YP_721849.1| putative methyltransferase [Trichodesmium erythraeum IMS101]
 gi|110166836|gb|ABG51376.1| putative methyltransferase [Trichodesmium erythraeum IMS101]
          Length = 182

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 19/28 (67%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY 49
           ++++G+ +  L+ L  +  DLI+ DPPY
Sbjct: 93  QVLRGDVLKRLKVLVGQKFDLIYFDPPY 120


>gi|256421554|ref|YP_003122207.1| methyltransferase type 11 [Chitinophaga pinensis DSM 2588]
 gi|256036462|gb|ACU60006.1| Methyltransferase type 11 [Chitinophaga pinensis DSM 2588]
          Length = 280

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 7/145 (4%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
             + ++ L  K           E+    I      PG  +LD   G GT+   + +L   
Sbjct: 10  TTNPNKALWEKGDFTRLAATMRESGTELISKLDITPGMDVLDLGCGDGTTALPSARLGAR 69

Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP--RVAFNLLV--ERGLIQPGQ 303
            +G+++ ++ +    KRI   + L NI +        E     +F+L+V     +  P  
Sbjct: 70  VLGVDIARNLVAAGNKRIEE-EGLTNIRILEGDATHLEGIADASFDLVVSIFGAMFAPKP 128

Query: 304 ILTNAQGNISATVCADGTLISGTEL 328
              +    +       G ++ G  +
Sbjct: 129 --FDVAKEMVRVTRPGGRIVMGNWI 151


>gi|170291070|ref|YP_001737886.1| putative RNA methylase [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170175150|gb|ACB08203.1| putative RNA methylase [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 307

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 204 HPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           HP      L   ++ ++ T+ GD++LDPF G G        +    IG+++ +  +  A 
Sbjct: 137 HPASMRPTLARAMVNLARTRGGDLVLDPFLGVGGIALEILSVGARLIGVDINEKLVIQAK 196

Query: 263 KRI 265
             +
Sbjct: 197 NNL 199


>gi|330908688|gb|EGH37202.1| DNA-methyltransferase [Escherichia coli AA86]
          Length = 299

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 12/89 (13%)

Query: 5   NSLAINENQNSIFEWKDKI--IKGNSISVLEK----LPAKSVDLIFADPPYNLQLNG--- 55
           N   +    + I E + +I     ++I  ++K    LP  S  L + DPPY ++  G   
Sbjct: 149 NKSDLISRIHKISENRHRIDLYNMDAIDFIKKIVIQLPQNS--LTYLDPPYYIKGKGLYI 206

Query: 56  -QLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
                 DH  V  V  +  K     +YD 
Sbjct: 207 NHYNHDDHVRVAKVVQNNIKTPWIVSYDN 235


>gi|301321577|gb|ADK68967.1| Adenine-specific DNA methylase containing a Zn- ribbon [Gordonia
           sp. KTR9]
          Length = 924

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 43/132 (32%), Gaps = 13/132 (9%)

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWA--SPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           I     + +  +  RR   A   +I+A     P A+   F  +  +    +   R    +
Sbjct: 27  IKHGHPSTLHMWWARRPHTAARAVIFAQLVDDPSARPDEFPTEESQRLERERLHRLIERL 86

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
                     N    +L         L  I  SS      ILDPF G GT    A++L  
Sbjct: 87  ASWD------NSSDRRLFA-----EALDEIRRSSGGELPSILDPFAGGGTIPLEAQRLGL 135

Query: 247 SFIGIEMKQDYI 258
              G ++    +
Sbjct: 136 DATGSDLNPVAV 147


>gi|116620641|ref|YP_822797.1| hypothetical protein Acid_1520 [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116223803|gb|ABJ82512.1| conserved hypothetical protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 182

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 207 QKPEALLSRILVSS-TKPGDIILDPFFGSGT-SGAVAKKLRRSFIGIEMKQDYIDIATKR 264
             P+ ++ R+L +   KPG+++ D   G G      A+K     +G+E+  D    A +R
Sbjct: 33  PTPQVIVERMLTAGRVKPGEVVYDLGCGDGRIVIMAAQKFGARAVGVELLPDIARKARER 92

Query: 265 IASV 268
           + ++
Sbjct: 93  VQTL 96


>gi|329896519|ref|ZP_08271577.1| Ribosomal RNA small subunit methyltransferase D [gamma
           proteobacterium IMCC3088]
 gi|328921736|gb|EGG29109.1| Ribosomal RNA small subunit methyltransferase D [gamma
           proteobacterium IMCC3088]
          Length = 177

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPY 49
           K ++   ++ + ++     S DL+F DPPY
Sbjct: 90  KSQVHCTDATNFIDHFAD-SADLVFIDPPY 118


>gi|307210239|gb|EFN86889.1| THUMP domain-containing protein 3 [Harpegnathos saltator]
          Length = 413

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 4/110 (3%)

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILV-SSTKPGDIILDPFFGSGTSGA-VAKKLRRSFI 249
            E    ++     PT     +   +L  ++ KPGDI++DP  GSG+     A       I
Sbjct: 238 HESKHRRNIVSFGPTTLRSTICYNLLRLANPKPGDIVIDPMCGSGSIPIEAALAFSHLCI 297

Query: 250 GI-EMKQDYIDIATKRIASVQPLGNIELTVLTGKRT-EPRVAFNLLVERG 297
              +     ++     I   +    I     +GK++   R+    L+E G
Sbjct: 298 LCGDKNSKAVERTKSNIDGSETAARILFGKRSGKKSNNERLYKQFLLELG 347


>gi|302670477|ref|YP_003830437.1| SAM-dependent methyltransferase [Butyrivibrio proteoclasticus B316]
 gi|302394950|gb|ADL33855.1| SAM-dependent methyltransferase [Butyrivibrio proteoclasticus B316]
          Length = 380

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 5   NSLAINENQNSIFEWKDKIIKG---NSISVLEKLPAKSVDLIF 44
           N   ++ N++ I   ++K I G   +S   ++++   SVDL+ 
Sbjct: 119 NVTDLDPNEDCIANARNKKINGILADSTD-MKQIKDNSVDLVI 160


>gi|258654488|ref|YP_003203644.1| type 12 methyltransferase [Nakamurella multipartita DSM 44233]
 gi|258557713|gb|ACV80655.1| Methyltransferase type 12 [Nakamurella multipartita DSM 44233]
          Length = 192

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           +R L      G  ILD   G+G   A   ++    +G++     I+IA +R
Sbjct: 27  ARFLDMMADRGSTILDGGCGTGRVAAALHRMGHRVVGLDRDAGLIEIARRR 77


>gi|237752380|ref|ZP_04582860.1| predicted protein [Helicobacter winghamensis ATCC BAA-430]
 gi|229375869|gb|EEO25960.1| predicted protein [Helicobacter winghamensis ATCC BAA-430]
          Length = 268

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 11/130 (8%)

Query: 10  NENQNSIFEWKDKIIKGNSIS------VLEKLPAK--SVDLIFA--DPPYNLQLNGQLYR 59
           ++ + S+   ++KI +  S+S      VL++L       +LI      PY   L    Y 
Sbjct: 48  SKQELSLESLRNKITEAQSLSKIDTQIVLDRLKNNISQANLILLKKSLPYFYSLTLNTYP 107

Query: 60  PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
            D  L+ A+  S + F      + FT++     + +L  NG++ +  S   +  +  M +
Sbjct: 108 SDSRLI-AIQKSLESFDDIVRIETFTKSHNQIYQLLLIINGSIMIFSSLIALISLLLMFK 166

Query: 120 NLNFWILNDI 129
            +  W    +
Sbjct: 167 QIEIWKFQHL 176


>gi|290890803|ref|ZP_06553870.1| hypothetical protein AWRIB429_1260 [Oenococcus oeni AWRIB429]
 gi|290479575|gb|EFD88232.1| hypothetical protein AWRIB429_1260 [Oenococcus oeni AWRIB429]
          Length = 186

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 1/81 (1%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           PT +        +++      I+LD + GSG+ G  A     R    ++  +  I++   
Sbjct: 23  PTTEKVKEALFSIIAPYNKPGIVLDLYAGSGSLGIEAVSRGYRKAYLVDHARPAIEVIRN 82

Query: 264 RIASVQPLGNIELTVLTGKRT 284
            + + +   N E+      + 
Sbjct: 83  NVIATKSPENFEIIKAPASQA 103


>gi|254452134|ref|ZP_05065571.1| cyclopropane-fatty-acyl-phospholipid synthase [Octadecabacter
           antarcticus 238]
 gi|198266540|gb|EDY90810.1| cyclopropane-fatty-acyl-phospholipid synthase [Octadecabacter
           antarcticus 238]
          Length = 407

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 84/259 (32%), Gaps = 33/259 (12%)

Query: 29  ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
            ++++ LP   VD +  D        G+ +R + +    V  +  +  + + +    R  
Sbjct: 24  FAMMKHLPRGRVDFVLTD--------GRTFRAEAAEAGYV--AVLRVLNDDLFARLIREG 73

Query: 89  LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
            L                 + +   +   +      +++D      +  P   G+    +
Sbjct: 74  DLGFSEAYLDG--------WWSTPDLMAFMD-----LVSDDAEEVYDGFP---GQGLIRS 117

Query: 149 HETL-IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
           +E L  W   + K +            NE   +  D  +   S       +D  +   TQ
Sbjct: 118 YEKLRFWWQSNSKRQARKNISYHYDLGNEFYGLWLDETMTYSSAKFETGQEDLARAQ-TQ 176

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIA 266
           K  +++        K GD +L+   G G      AK+       + + Q+  + A  RI 
Sbjct: 177 KYASMVD---EMGVKAGDHVLEIGCGWGGFAEYAAKERGLRVTALTISQEQYNYAVDRIE 233

Query: 267 SVQPLGNIELTVLTGKRTE 285
               L ++    +   R E
Sbjct: 234 KA-GLSDLVTFKMQDYRDE 251


>gi|116491255|ref|YP_810799.1| N6-adenine-specific methylase [Oenococcus oeni PSU-1]
 gi|116091980|gb|ABJ57134.1| N6-adenine-specific methylase [Oenococcus oeni PSU-1]
          Length = 186

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 1/81 (1%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           PT +        +++      I+LD + GSG+ G  A     R    ++  +  I++   
Sbjct: 23  PTTEKVKEALFSIIAPYNKPGIVLDLYAGSGSLGIEAVSRGYRKAYLVDHARPAIEVIRN 82

Query: 264 RIASVQPLGNIELTVLTGKRT 284
            + + +   N E+      + 
Sbjct: 83  NVIATKSPENFEIIKAPASQA 103


>gi|326801093|ref|YP_004318912.1| methyltransferase type 11 [Sphingobacterium sp. 21]
 gi|326551857|gb|ADZ80242.1| Methyltransferase type 11 [Sphingobacterium sp. 21]
          Length = 179

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 61/156 (39%), Gaps = 16/156 (10%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA-VAK 242
           +++PI   ++++ +KD   + PT K E + + + +++  P D++ D   G G      AK
Sbjct: 15  FMVPITMQAQQMIDKDVPYV-PT-KQEVVEAMLTLANVGPNDMLYDLGCGDGRIVVTAAK 72

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE------------PRVAF 290
           K     +GI++  + I  A +          +        + +            P V  
Sbjct: 73  KFGAKAVGIDIDPERIQEARENAQKAAVENKVAFLQQDLFKADFSKASVVSLYLLPSVNM 132

Query: 291 NLLVERGLIQPGQILTNAQGNISATVCADGTLISGT 326
            L  +   ++PG  + +   ++      D  ++ G 
Sbjct: 133 KLRPKLLQLKPGTRVVSHAFDMGDW-KPDKQMVVGN 167


>gi|303238635|ref|ZP_07325168.1| ribosomal protein L11 methyltransferase [Acetivibrio cellulolyticus
           CD2]
 gi|302593754|gb|EFL63469.1| ribosomal protein L11 methyltransferase [Acetivibrio cellulolyticus
           CD2]
          Length = 314

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 74/200 (37%), Gaps = 14/200 (7%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSSTKPG 224
            Y       + + ++  W        E +   D      T   E   + S +L    KPG
Sbjct: 116 KYYKPLNLTDKLVIKPSWESYEKKNDEIVVEMDPGMAFGTGTHETTQMCSILLEKYVKPG 175

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATKR--IASVQPLGNIELTVLTG 281
           D ++D   G+G    +A KL    +  +++ +  + +A +   I  V    +    V+  
Sbjct: 176 DKVIDLGCGTGILSIIAAKLGAEAVTAVDIDEVAVKVAKENCAINGVDGKVSAFRGVIDD 235

Query: 282 KRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGS 341
            + E       ++   +I    ++ +    I + +  DG  ++      I     +V  +
Sbjct: 236 LKKE----KADIIVANII--ANVIIDISSKIPSYLKKDGLFVTSGI---IKERSQEVLEA 286

Query: 342 ETCNGWNFWYFEKLGELHSI 361
            T  G+    FE+LGE  +I
Sbjct: 287 YTKLGFKCEQFEELGEWVAI 306


>gi|255021278|ref|ZP_05293327.1| LSU m5C1962 methyltransferase RlmI [Acidithiobacillus caldus ATCC
           51756]
 gi|254969289|gb|EET26802.1| LSU m5C1962 methyltransferase RlmI [Acidithiobacillus caldus ATCC
           51756]
          Length = 432

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 24/89 (26%)

Query: 24  IKGNSISVLEKLPA--KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
            +G ++  L +L    +S DLI  DPP              +L+ +  D  D  +++   
Sbjct: 276 HEGEALETLRQLRDRAESFDLILLDPP--------------ALIKSRKDVRDGTAAYARL 321

Query: 82  DAFTRAWLLACRRVLKPNGTLWV-IGSYH 109
           +           R+L+P+G L+    SYH
Sbjct: 322 NDL-------ALRLLRPDGLLFTASCSYH 343


>gi|196228304|ref|ZP_03127171.1| SAM-dependent methyltransferase-like protein [Chthoniobacter flavus
           Ellin428]
 gi|196227707|gb|EDY22210.1| SAM-dependent methyltransferase-like protein [Chthoniobacter flavus
           Ellin428]
          Length = 326

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 14  NSIFEWKDKIIKGNSISVLEKL--PAKSVDLIFADPP-YNLQLNGQLYRPDHSL 64
           N + + K +    + + VL +L    +  D+I  DPP ++    G+ ++ +  L
Sbjct: 201 NGLDDSKHRFFADDVLDVLPRLARKNEKFDIIILDPPTFSRGNKGRRFQVEQDL 254


>gi|145636495|ref|ZP_01792163.1| putative type III restriction/modification system modification
           methylase [Haemophilus influenzae PittHH]
 gi|145270320|gb|EDK10255.1| putative type III restriction/modification system modification
           methylase [Haemophilus influenzae PittHH]
          Length = 146

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 14/84 (16%)

Query: 38  KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK 97
             V LI+ D P+N   +   Y              DKF S   +  F +  L   + +L 
Sbjct: 5   GKVKLIYIDVPFNTGNDSFGY-------------NDKF-SRSTWLTFMKNRLEVAKDLLA 50

Query: 98  PNGTLWVIGSYHNIFRIGTMLQNL 121
            +G ++V   Y+    +  +L  +
Sbjct: 51  DDGVIFVHCDYNEDGYLRVLLDEI 74


>gi|262402170|ref|ZP_06078731.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio sp. RC586]
 gi|262350952|gb|EEZ00085.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio sp. RC586]
          Length = 707

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 22/130 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + + I+ + +  L     +  DLIF DPP         +     +        D  +   
Sbjct: 594 QHQYIQADCLQWLANAQGQY-DLIFIDPP--------TFSNSKRMEQTFDVQRDHVT--- 641

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                    +   +R+L+P GT+    +  +       LQ L   +    +  ++ PM  
Sbjct: 642 --------LMTNLKRMLRPEGTIVFSNNKRHFKMDLEALQAL--ELNAQNISHQTLPMDF 691

Query: 140 FRGRRFQNAH 149
            R ++  N  
Sbjct: 692 ERNKQIHNCW 701


>gi|313637000|gb|EFS02576.1| RNA methyltransferase, RsmD family [Listeria seeligeri FSL S4-171]
          Length = 189

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 41/137 (29%), Gaps = 7/137 (5%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDY 257
            G    PT          ++     GD++LD F GSG  G  A        + I+  Q  
Sbjct: 21  PGNNTRPTTDKVKESLFSIIGPFFDGDVVLDLFAGSGGLGIEALSRGAERAVFIDQAQAA 80

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL------LVERGLIQPGQILTNAQGN 311
           I      + S       E+     +R    +  N        ++    +        Q  
Sbjct: 81  IKTIRLNLESCHFTDRAEVYRNEAERALKLLHKNEWKFDLVFLDPPYKKQQLEKLLLQLE 140

Query: 312 ISATVCADGTLISGTEL 328
             A V  +G +I   + 
Sbjct: 141 KLALVSENGRIICEHDK 157


>gi|253578497|ref|ZP_04855769.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850815|gb|EES78773.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 386

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILV-SSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           +C  + R+  +   +++P Q  E L    +  +     + ++D + G GT G VA K  +
Sbjct: 201 LCGCTFRISPQSFYQVNPVQT-EILYKTAIEYAGLGRKETVIDAYCGIGTIGLVAAKRAK 259

Query: 247 SFIGIEMKQDYIDIAT 262
           + IG+E+  D +  A 
Sbjct: 260 NVIGVELNPDAVRDAR 275


>gi|163783520|ref|ZP_02178510.1| probable methylation subunit, type III restriction-modification
           system [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881140|gb|EDP74654.1| probable methylation subunit, type III restriction-modification
           system [Hydrogenivirga sp. 128-5-R1-1]
          Length = 1108

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 53/151 (35%), Gaps = 21/151 (13%)

Query: 15  SIFEWKDK----IIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
           +I + +DK    +IK  +   L  L  K    V  I+ DPPYN + +  LY+        
Sbjct: 539 AIDDLEDKVRGVLIKSENFQALRFLEPKYRGKVKTIYIDPPYNAKSSEILYKNTFKHSSW 598

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
           +       S  E   A  + +L         +G   V    +   R+G +++ L      
Sbjct: 599 L-------SLMENRLALGKEFLRE------EDGVFVVAIDENEQERLGLLIEELFPEYKK 645

Query: 128 DIVWRKSNPMPNFR-GRRFQNAHETLIWASP 157
            +V    NP        R+ N     I+   
Sbjct: 646 TMVAVVHNPSGIQGENFRYTNDFAYFIYPDK 676



 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 17/39 (43%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
            K    +   +  S+ P  +ILD F GSGT+      L 
Sbjct: 830 PKSVWTVHDSIKISSNPDSLILDFFAGSGTTAHAVALLN 868


>gi|157373359|ref|YP_001471959.1| putative methyltransferase [Shewanella sediminis HAW-EB3]
 gi|157315733|gb|ABV34831.1| putative methyltransferase [Shewanella sediminis HAW-EB3]
          Length = 193

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 21/28 (75%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY 49
           ++IKG+++ +L   P++  D+I+ DPP+
Sbjct: 105 EVIKGDTLKLLATKPSEGFDIIYIDPPF 132


>gi|40217450|emb|CAE46383.1| methyltransferase [uncultured archaeon]
 gi|268323833|emb|CBH37421.1| conserved hypothetical protein [uncultured archaeon]
          Length = 455

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++LDPF G GT    AK    +  G E+  
Sbjct: 92  VVLDPFAGCGTVLVQAKLNGHTSCGTELNP 121


>gi|50085889|ref|YP_047399.1| hypothetical protein ACIAD2846 [Acinetobacter sp. ADP1]
 gi|49531865|emb|CAG69577.1| conserved hypothetical protein [Acinetobacter sp. ADP1]
          Length = 222

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 10/90 (11%)

Query: 184 WLIPICSGSERLRNKDGEKL--------HPTQKPEALLSRILVSSTKPGD-IILDPFFGS 234
           WLIP    +ERL +    ++               A+   +L       D ++LD   GS
Sbjct: 40  WLIPPVFPTERLDDDIIRRIWSDTPYWIFCWASGLAMAQWLLAEPHHVKDKVVLDFGAGS 99

Query: 235 GTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           G     AK    +  I  ++ +  ++   +
Sbjct: 100 GVVAIAAKMAGAKRVICCDIDETSLNACRE 129


>gi|57506161|ref|ZP_00372082.1| ulcer associated adenine specific DNA methyltransferase
           [Campylobacter upsaliensis RM3195]
 gi|57015556|gb|EAL52349.1| ulcer associated adenine specific DNA methyltransferase
           [Campylobacter upsaliensis RM3195]
          Length = 351

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYN 50
           K   G+S+ +L+    +S+D+++ DPPYN
Sbjct: 207 KCFCGDSVKLLQGFK-ESIDILYLDPPYN 234


>gi|323485087|ref|ZP_08090440.1| hypothetical protein HMPREF9474_02191 [Clostridium symbiosum
           WAL-14163]
 gi|323693537|ref|ZP_08107741.1| hypothetical protein HMPREF9475_02604 [Clostridium symbiosum
           WAL-14673]
 gi|323401643|gb|EGA93988.1| hypothetical protein HMPREF9474_02191 [Clostridium symbiosum
           WAL-14163]
 gi|323502392|gb|EGB18250.1| hypothetical protein HMPREF9475_02604 [Clostridium symbiosum
           WAL-14673]
          Length = 501

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSF--IGIEMKQDYIDIATK 263
               K G  +LDPF G+GT      K  R++   G+++++D +  A K
Sbjct: 344 REYMKEGAQVLDPFCGAGTMLIERHKAVRAYTSYGVDIQEDAVRKARK 391


>gi|313632466|gb|EFR99485.1| RNA methyltransferase, RsmD family [Listeria seeligeri FSL N1-067]
          Length = 189

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 41/137 (29%), Gaps = 7/137 (5%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDY 257
            G    PT          ++     GD++LD F GSG  G  A        + I+  Q  
Sbjct: 21  PGNNTRPTTDKVKESLFSIIGPFFDGDVVLDLFAGSGGLGIEALSRGAERAVFIDQAQAA 80

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL------LVERGLIQPGQILTNAQGN 311
           I      + S       E+     +R    +  N        ++    +        Q  
Sbjct: 81  IKTIRLNLESCHFTDRAEVYRNEAERALKLLHKNEWKFDLVFLDPPYKKQQLEKLLLQLE 140

Query: 312 ISATVCADGTLISGTEL 328
             A V  +G +I   + 
Sbjct: 141 KLALVSENGRIICEHDK 157


>gi|167767097|ref|ZP_02439150.1| hypothetical protein CLOSS21_01615 [Clostridium sp. SS2/1]
 gi|167711072|gb|EDS21651.1| hypothetical protein CLOSS21_01615 [Clostridium sp. SS2/1]
 gi|291559568|emb|CBL38368.1| Type I restriction-modification system methyltransferase subunit
           [butyrate-producing bacterium SSC/2]
          Length = 573

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKK--LRRSFIGIEMKQDYIDIATKRIASVQ 269
           L +RIL  + +    + D   G G     A +      + GIE+   Y +I+  R+  + 
Sbjct: 126 LATRILNINNEK---VADFCCGVGNFLINAIEQDKNSKYYGIEINTHYKEISNIRLNLIS 182

Query: 270 PLGNIEL 276
               IE 
Sbjct: 183 DYTEIEQ 189


>gi|160886781|ref|ZP_02067784.1| hypothetical protein BACOVA_04794 [Bacteroides ovatus ATCC 8483]
 gi|156107192|gb|EDO08937.1| hypothetical protein BACOVA_04794 [Bacteroides ovatus ATCC 8483]
          Length = 424

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 7/85 (8%)

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG---DIILDPFFGSGTS 237
           + +W +P    +ER R       +P + P  + ++ +  + +       + D F G GT 
Sbjct: 19  KEEWNMP----AERERRMHSIHAYPAKFPAFITTKAIHKAEEYNISVKTVADIFCGCGTV 74

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIAT 262
                +  + F G ++      IA 
Sbjct: 75  AFETVRSGKHFWGCDINPVATLIAE 99


>gi|57168061|ref|ZP_00367200.1| cyclopropane fatty acid synthase (cfa) [Campylobacter coli RM2228]
 gi|305431787|ref|ZP_07400954.1| cyclopropane-fatty-acyl-phospholipid synthase [Campylobacter coli
           JV20]
 gi|57020435|gb|EAL57104.1| cyclopropane fatty acid synthase (cfa) [Campylobacter coli RM2228]
 gi|304444871|gb|EFM37517.1| cyclopropane-fatty-acyl-phospholipid synthase [Campylobacter coli
           JV20]
          Length = 387

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 69/188 (36%), Gaps = 16/188 (8%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG-TSGAVAK 242
           WL    S S        + L+  Q    +   +     KP + +LD   G G  S   A+
Sbjct: 123 WLDDTMSYSCAYFKTSSDTLYEAQIN-KIEHTLKKLDLKPNEKLLDIGCGWGWLSIMAAQ 181

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLI-QP 301
           K     +G+ + ++    A +R+  ++    +E+ +   +  E    F+ +V  G+    
Sbjct: 182 KYGVKVVGVTISEEQCKKAQERVRELKLEDRVEIRLQNYQDLEFEDYFDKVVSVGMFEHV 241

Query: 302 GQILTNAQGNISATV-CADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
           G+         +  V    G+++       +H + A   G    N W   Y    G L S
Sbjct: 242 GKENLGLYFMKAKQVLKPGGSML-------LHSILAMFEGKT--NAWIDKYIFPGGYLPS 292

Query: 361 INTLRILV 368
              LR +V
Sbjct: 293 ---LREVV 297


>gi|331090275|ref|ZP_08339162.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|330401894|gb|EGG81469.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 459

 Score = 39.2 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 6/89 (6%)

Query: 206 TQKPEALLSRILVSSTKPGDI-ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT-- 262
           T+  E L   +        D+ + D F G+GT   V   + +  IG+E+ ++ ++ A   
Sbjct: 295 TKGAEVLYETVREYIGDIRDLTVFDLFSGTGTISQVLAPVAKKVIGVEIVEEAVEAAKEN 354

Query: 263 -KR--IASVQPLGNIELTVLTGKRTEPRV 288
            +R  +++ + +      VL   + +P V
Sbjct: 355 AERNGLSNCEFIAGDVFEVLDDIKEKPDV 383


>gi|317028879|ref|XP_001390691.2| UbiE/COQ5 family methyltransferase [Aspergillus niger CBS 513.88]
          Length = 276

 Score = 39.2 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 219 SSTKPGDIILDPFFGSGT-SGAVAKKLRRS--FIGIEMKQDYIDIATKRIASV 268
           ++ K G+ ILD   GSG      A K+ R+   IG++M    I++A K I   
Sbjct: 63  ANLKEGETILDLGSGSGIDVLLAAHKVGRNGQAIGVDMTDKMIELAKKNIQKA 115


>gi|268607907|ref|ZP_06141638.1| ribosomal protein L11 methyltransferase [Ruminococcus flavefaciens
           FD-1]
          Length = 321

 Score = 39.2 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 4/122 (3%)

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYIDIATKRIASVQ 269
            L   ++      GD +LD   GSG     A  L     + ++++Q+  + A +      
Sbjct: 166 RLCLELIEKYLNSGDKVLDLGCGSGILSIAAMLLGADHAVAVDIEQNAAETAQENAGKNH 225

Query: 270 PLGNIELTVLTGKRTEPRVAFNLLVERGLIQPG---QILTNAQGNISATVCADGTLISGT 326
               +  T         ++A  +  +  +I       +L   + +    +   G LI   
Sbjct: 226 IDPALYKTYYGDITVNEKLAEEIHDKYDMITANIVADVLIAMKDHFRRYLRDGGILIVSG 285

Query: 327 EL 328
            +
Sbjct: 286 II 287


>gi|253698879|ref|YP_003020068.1| ribosomal protein L11 methyltransferase [Geobacter sp. M21]
 gi|259534536|sp|C6DY35|PRMA_GEOSM RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|251773729|gb|ACT16310.1| ribosomal protein L11 methyltransferase [Geobacter sp. M21]
          Length = 306

 Score = 39.2 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 47/134 (35%), Gaps = 11/134 (8%)

Query: 200 GEKLHPTQKPE-ALLSRI--LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQ 255
           G   HPT K     L RI       K    +LD   GSG     A  L    I  +++  
Sbjct: 145 GTGAHPTTKMCLEALERIGFYAHGGKLPSPVLDVGTGSGVLSIAAALLGAEEIVAVDIDP 204

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFN-LLVERGLIQPGQILTNAQGNISA 314
           + + +  + +     L  +   V     +  ++     +V   ++   + L    G ++A
Sbjct: 205 EAVRVTVENLE----LNGMADRVAPSTTSLEQLPGGFQVVVANIL--AEELVRLAGELTA 258

Query: 315 TVCADGTLISGTEL 328
            V   G LI    L
Sbjct: 259 RVAPGGWLILSGIL 272


>gi|24461735|gb|AAN62304.1|AF440524_91 conserved hypothetical plasmid protein [Pseudomonas aeruginosa]
          Length = 369

 Score = 39.2 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 47/122 (38%), Gaps = 17/122 (13%)

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGD--IILDPFFGSGTS-GAVAKKLRRS---FIG 250
           N      +PT   EA L R L + T       ILDP  G G +    A  L R       
Sbjct: 11  NFAKNGYYPT--DEATLERTLSALTPSDGPMCILDPCAGEGVAIAEAAHALGRDQTTAYA 68

Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQG 310
           +E   +  + A +R+      G++   VL       R +F LL        G++  +A G
Sbjct: 69  VEYDPERANHA-RRLVDHCIQGDLMDAVLA------RQSFGLLWLNPP--YGELSKDANG 119

Query: 311 NI 312
           NI
Sbjct: 120 NI 121


>gi|154247624|ref|YP_001418582.1| hypothetical protein Xaut_3698 [Xanthobacter autotrophicus Py2]
 gi|154161709|gb|ABS68925.1| hypothetical protein Xaut_3698 [Xanthobacter autotrophicus Py2]
          Length = 449

 Score = 39.2 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 15/114 (13%)

Query: 204 HPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +PT  P  ++ R+L     KPGD +L+P  G G      +      +GIE+         
Sbjct: 295 YPT--PATVVERVLGDLYVKPGDRVLEPSCGCGRFMDALRARGARALGIEVDPGRAAQCR 352

Query: 263 KR--------IASVQPLGNIELTVLTGKRTEPRVAFNLLVERGL--IQPGQILT 306
            R            +P G+ +  V+          +   VE  L  ++PG  LT
Sbjct: 353 ARGHSVLTANFLETEPTGDFDHVVMNPPFYGR--HYAKHVEHALRFLKPGGWLT 404


>gi|159117994|ref|XP_001709216.1| RNA methylase, putative [Giardia lamblia ATCC 50803]
 gi|157437332|gb|EDO81542.1| RNA methylase, putative [Giardia lamblia ATCC 50803]
          Length = 496

 Score = 39.2 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 205 PTQKPEAL-LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           PT     L      V+  KPGDI+ DPF G+ +    A       IG ++ 
Sbjct: 244 PTSMDHELAFIMCEVAGLKPGDIVCDPFAGTCSILVSAASYGCITIGGDLN 294


>gi|241888682|ref|ZP_04775989.1| type I restriction-modification system, M subunit [Gemella
           haemolysans ATCC 10379]
 gi|241864705|gb|EER69080.1| type I restriction-modification system, M subunit [Gemella
           haemolysans ATCC 10379]
          Length = 526

 Score = 39.2 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
            K G +    Q    LL++I+V      + + DP  GSG+      ++ R F  +E+++ 
Sbjct: 203 GKSGGEFFTPQTVSRLLAKIVVDGKDKINKVYDPTCGSGSLLL---QM-RKFECVEIEEG 258

Query: 257 YI 258
           Y 
Sbjct: 259 YY 260


>gi|229174090|ref|ZP_04301626.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus MM3]
 gi|228609422|gb|EEK66708.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus MM3]
          Length = 390

 Score = 39.2 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 81/213 (38%), Gaps = 10/213 (4%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
            + S    +K    +  A      +   +  WL    + S      + + L   Q    +
Sbjct: 96  YFKSKWNFSKQKNKDDIAHHYDIGNDFYKL-WLDETMTYSCAYFQSEQDSLTAAQ-HNKV 153

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
              +   + + GD +LD   G G    A AK+     +G+ + ++     ++RI   + L
Sbjct: 154 NHILKKLNLQKGDTLLDIGCGWGELITAAAKQYGVKAMGVTLSEEQYAKTSERIKQ-EGL 212

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSI 331
            ++    L   R    + F+ +V  G+I+   +  +       TV     L++   +  +
Sbjct: 213 TDLVEVSLLDYRDIKNLKFDKIVSVGMIE--HVGKDNITQYFETVNE---LLNNGGISLL 267

Query: 332 HRVGAKVSGSETCNGWNFWYFEKLGELHSINTL 364
           H + +  +G  T NGW   Y    G + ++N L
Sbjct: 268 HCITSPANGGAT-NGWIEKYIFPGGYVPAVNEL 299


>gi|229197529|ref|ZP_04324255.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus
           m1293]
 gi|228585974|gb|EEK44066.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus
           m1293]
          Length = 390

 Score = 39.2 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 77/214 (35%), Gaps = 12/214 (5%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
            + S    +K    +  A      +   +  WL    + S      + + L   Q    +
Sbjct: 96  YFKSKWNFSKQKNKDDIAYHYDIGNDFYKL-WLDETMTYSCAYFQNEQDSLTTAQ-HNKV 153

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
              +   + + GD +LD   G G    A AK+     +G+ + ++     ++RI   + L
Sbjct: 154 NHILKKLNLQKGDTLLDIGCGWGELITAAAKQYGVKAMGVTLSEEQYAKTSERIKQ-EGL 212

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLI-QPGQILTNAQGNISATVCADGTLISGTELGS 330
            ++    L   R      F+ +V  G+I   G+            +  DG +        
Sbjct: 213 TDLVEVSLLDYRDIKNRKFDKIVSVGMIEHVGKDNITQYFETVNALLNDGGISL------ 266

Query: 331 IHRVGAKVSGSETCNGWNFWYFEKLGELHSINTL 364
           +H + +  +G  T NGW   Y    G + ++N L
Sbjct: 267 LHCITSPANGGAT-NGWIEKYIFPGGYVPAVNEL 299


>gi|220919307|ref|YP_002494611.1| hypothetical protein A2cp1_4228 [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219957161|gb|ACL67545.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 247

 Score = 39.2 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
              ++R L++ T    ++ DPF G GT  AVA       +G+E+ 
Sbjct: 170 CEAVARFLLAETGCRTVV-DPFCGLGTMLAVANAHGLDALGVELS 213


>gi|325508852|gb|ADZ20488.1| S-adenosylmethionine-dependent methyltransferase [Clostridium
           acetobutylicum EA 2018]
          Length = 453

 Score = 39.2 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 210 EALLSRILVSSTKPGD-IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           E L S +L       +  + D + G+GT G +A K     IGIE+ ++ ++ A +
Sbjct: 293 EKLYSEVLEFLGDVSNKTVFDLYCGTGTIGQLASKKAEKVIGIELIEEAVEAAKE 347


>gi|298245779|ref|ZP_06969585.1| conserved hypothetical protein [Ktedonobacter racemifer DSM 44963]
 gi|297553260|gb|EFH87125.1| conserved hypothetical protein [Ktedonobacter racemifer DSM 44963]
          Length = 372

 Score = 39.2 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 36/106 (33%), Gaps = 18/106 (16%)

Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278
             +     ILDP  G GT+  +A        GIE+         +R   V+         
Sbjct: 164 MQSTERLRILDPLAGGGTTLFLALAAGYDAFGIEL---------QR-QDVETTAGYVRQY 213

Query: 279 LTGKRTEPRVAFNLLVERGLIQPG---QILTNAQGNISATVCADGT 321
           LTG+     + F    ERG  + G   Q     +G       AD T
Sbjct: 214 LTGE----GIPFKETDERGR-KVGRRYQFEIGRKGQKVTRANADST 254


>gi|15894714|ref|NP_348063.1| S-adenosylmethionine-dependent methyltransferase [Clostridium
           acetobutylicum ATCC 824]
 gi|50401651|sp|Q97J51|Y1435_CLOAB RecName: Full=Uncharacterized RNA methyltransferase CA_C1435
 gi|15024377|gb|AAK79403.1|AE007655_1 S-adenosylmethionine-dependent methyltransferases [Clostridium
           acetobutylicum ATCC 824]
          Length = 456

 Score = 39.2 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 210 EALLSRILVSSTKPGD-IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           E L S +L       +  + D + G+GT G +A K     IGIE+ ++ ++ A +
Sbjct: 296 EKLYSEVLEFLGDVSNKTVFDLYCGTGTIGQLASKKAEKVIGIELIEEAVEAAKE 350


>gi|222096870|ref|YP_002530927.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus Q1]
 gi|221240928|gb|ACM13638.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus Q1]
          Length = 390

 Score = 39.2 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 77/214 (35%), Gaps = 12/214 (5%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
            + S    +K    +  A      +   +  WL    + S      + + L   Q    +
Sbjct: 96  YFKSKWNFSKQKNKDDIAYHYDIGNDFYKL-WLDETMTYSCAYFQNEQDSLTTAQ-HNKV 153

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
              +   + + GD +LD   G G    A AK+     +G+ + ++     ++RI   + L
Sbjct: 154 NHILKKLNLQKGDTLLDIGCGWGELITAAAKQYGVKAMGVTLSEEQYAKTSERIKQ-EGL 212

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLI-QPGQILTNAQGNISATVCADGTLISGTELGS 330
            ++    L   R      F+ +V  G+I   G+            +  DG +        
Sbjct: 213 TDLVEVSLLDYRDIKNRKFDKIVSVGMIEHVGKDNITQYFETVNALLNDGGISL------ 266

Query: 331 IHRVGAKVSGSETCNGWNFWYFEKLGELHSINTL 364
           +H + +  +G  T NGW   Y    G + ++N L
Sbjct: 267 LHCITSPANGGAT-NGWIEKYIFPGGYVPAVNEL 299


>gi|18311815|ref|NP_558482.1| methylase, conjectural [Pyrobaculum aerophilum str. IM2]
 gi|18159224|gb|AAL62664.1| methylase, conjectural [Pyrobaculum aerophilum str. IM2]
          Length = 204

 Score = 39.2 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 227 ILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           +LD   G+G     A  +  R  + I++  + I IA +
Sbjct: 51  VLDLGCGTGRFSLAAAAMGARRVLCIDIDPEAIQIAKE 88


>gi|291286949|ref|YP_003503765.1| putative RNA methylase [Denitrovibrio acetiphilus DSM 12809]
 gi|290884109|gb|ADD67809.1| putative RNA methylase [Denitrovibrio acetiphilus DSM 12809]
          Length = 398

 Score = 38.8 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 21  DKIIKGNSISVLEKLP--AKSVDLIFADPP 48
            ++I G++   +EKL    +   ++  DPP
Sbjct: 277 HRLICGDAFEEMEKLRKNGEKFGMVIVDPP 306


>gi|118586739|ref|ZP_01544176.1| N6-adenine-specific methylase [Oenococcus oeni ATCC BAA-1163]
 gi|118432827|gb|EAV39556.1| N6-adenine-specific methylase [Oenococcus oeni ATCC BAA-1163]
          Length = 209

 Score = 38.8 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 1/81 (1%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           PT +        +++      I+LD + GSG+ G  A     R    ++  +  I++   
Sbjct: 23  PTTEKVKEALFSIIAPYNKPGIVLDLYAGSGSLGIEAVSRGYRKAYLVDHARPAIEVIRN 82

Query: 264 RIASVQPLGNIELTVLTGKRT 284
            + + +   N E+      + 
Sbjct: 83  NVIATKSPENFEIIKAPASQA 103


>gi|124513594|ref|XP_001350153.1| tRNA guanosine-2'-O-methyltransferase, putative [Plasmodium
           falciparum 3D7]
 gi|23615570|emb|CAD52562.1| tRNA guanosine-2'-O-methyltransferase, putative [Plasmodium
           falciparum 3D7]
          Length = 517

 Score = 38.8 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 59/198 (29%), Gaps = 8/198 (4%)

Query: 64  LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
           L+  V + W + +S+               + LK     +   SY  I      +  +NF
Sbjct: 116 LIKGVIELWSEGNSYNEILKELLLKKDLFEKTLKDKKWCFCFNSYGKIINQEEKVDKMNF 175

Query: 124 W------ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
           +        N  +      +        ++ H  ++      K      N          
Sbjct: 176 FKILLEPYTNIDLMNPQVQIGLIEEYEQESNHSHILKRVYFGKCIALRRNQYMNNINKLK 235

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL-LSRILVSSTKPGDIILDPFFGSGT 236
              +      I   +    NK    L PT     L      ++  K GDI+LDPF GSG 
Sbjct: 236 NDHKIIGKPKIAWWTSYALNKR-PILGPTTTDNDLAFIMCNIAKIKKGDIVLDPFVGSGG 294

Query: 237 SGAVAKKLRRSFIGIEMK 254
               +       IG ++ 
Sbjct: 295 LLITSSIFGAICIGNDID 312


>gi|317182291|dbj|BAJ60075.1| cyclopropane fatty acid synthase [Helicobacter pylori F57]
          Length = 389

 Score = 38.8 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 51/307 (16%), Positives = 98/307 (31%), Gaps = 29/307 (9%)

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM----LQNLNFWILNDIVWRKSNPMPNF 140
            + W     +V+  + +++  G +   F +         ++   +   I     + + + 
Sbjct: 11  FKQWKNGDYQVVFWDNSVYRNGEHSPKFTLKIHRPLKFSDIKKDMSLTIAEAYMDGVIDI 70

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS---------DWLIPICSG 191
            G   +  H   +  +     K                  +           WL    S 
Sbjct: 71  EGSMDEVMHSLYLQTNYEHLHKHDNAKAIQKPIKESSNISKHYDLGNDFYSIWLDETLSY 130

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG-TSGAVAKKLRRSFIG 250
           S     KD + LH  Q  + L   +     KPG+ +LD   G G  S   A++     +G
Sbjct: 131 SCAYFKKDDDTLHAAQL-QKLDHTLKKLHLKPGEKLLDIGCGWGYLSIKAAQEYGAQVMG 189

Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV-AFNLLVERGLI-QPGQILTNA 308
           I +  +    A KR+  +     + + +L  +  + R+  F+ +V  G+    G+     
Sbjct: 190 ITISSEQYKQANKRVQKLGLEDKVTIKLLNYQDLDGRLYRFDKVVSVGMFEHVGKDNLPF 249

Query: 309 QGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
                  V   G +        +H +     G    N W   Y    G L S   LR ++
Sbjct: 250 YFKKVKEVLKRGGMFL------LHSILCCFEGKT--NAWVDKYIFPGGYLPS---LREVM 298

Query: 369 RKELYNC 375
              +  C
Sbjct: 299 -SVMSEC 304


>gi|295101716|emb|CBK99261.1| 23S rRNA m(5)U-1939 methyltransferase [Faecalibacterium prausnitzii
           L2-6]
          Length = 548

 Score = 38.8 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +P D++LD + G GT G       R  IG+E+  + ID A  
Sbjct: 305 EPSDVLLDLYCGMGTIGLSMADRCRELIGVEIVPEAIDSAKA 346


>gi|291615312|ref|YP_003525469.1| ribosomal protein L11 methyltransferase [Sideroxydans
           lithotrophicus ES-1]
 gi|291585424|gb|ADE13082.1| ribosomal protein L11 methyltransferase [Sideroxydans
           lithotrophicus ES-1]
          Length = 296

 Score = 38.8 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 54/152 (35%), Gaps = 11/152 (7%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  R L  + K G+ +LD   GSG     A KL   S +G+++    +
Sbjct: 144 GTGSHPTTR---LCLRWLDENIKGGETVLDYGCGSGILAIAAMKLGAGSAVGVDVDAQAV 200

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
             +    A+ Q   +  L           V  N+L     ++    L  +       +  
Sbjct: 201 KSSRDNAAANQVSADFFLPEGKVLDQHDVVVANIL--TNPLRALAPLLASATRSGGRIVL 258

Query: 319 DGTLISGTELGSIHRVGAK-VSGSETCN--GW 347
            G L    +   + R+ A+    +      GW
Sbjct: 259 SGILAEQAD--DVMRIYAQWFDLAPAVLEDGW 288


>gi|297192052|ref|ZP_06909450.1| methyltransferase [Streptomyces pristinaespiralis ATCC 25486]
 gi|197719498|gb|EDY63406.1| methyltransferase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 281

 Score = 38.8 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 19/110 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY-------NLQLNGQLYRPDHSLVDAVTDSWDK 74
            +  G++++ L +L    VDL+ ++PPY        +    + + P  +L     D  D 
Sbjct: 161 TVHHGDALTALPEL-DGQVDLVISNPPYIPLTEWEYVAPEARDHDPQMALFSG-EDGLDT 218

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
               E              R+L+P G + +  +     ++  +    + W
Sbjct: 219 IRGIE----------RTAHRLLRPGGLVVIEHADTQGGQVPWIFNEESGW 258


>gi|332798852|ref|YP_004460351.1| TrmA family RNA methyltransferase [Tepidanaerobacter sp. Re1]
 gi|332696587|gb|AEE91044.1| RNA methyltransferase, TrmA family [Tepidanaerobacter sp. Re1]
          Length = 460

 Score = 38.8 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 12/105 (11%)

Query: 210 EALLSRILVSSTKPGD-IILDPFFGSGT-SGAVAKKLRRSFIGIEMKQDYIDIATKRI-A 266
           E L +++L  +    D I+LD + G+GT +  +A+K +    GIE+    +  A  R+ A
Sbjct: 296 EVLYNKVLEYAGITQDEIVLDLYCGTGTITLFLAQKAK-KAYGIELVSQAV--ADARLNA 352

Query: 267 SVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
            +  + N E      +   P++A     E G I+P  I+ +    
Sbjct: 353 KINGINNAEFIEGAAEAVLPKMA-----EEG-IKPDIIVVDPPRR 391


>gi|315638428|ref|ZP_07893605.1| type I restriction-modification system DNA-methyltransferase
           [Campylobacter upsaliensis JV21]
 gi|315481419|gb|EFU72046.1| type I restriction-modification system DNA-methyltransferase
           [Campylobacter upsaliensis JV21]
          Length = 42

 Score = 38.8 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 236 TSGAVAKKLRRSFIGIEMKQDYID 259
           T+G  A  L R F+GIE + ++I+
Sbjct: 18  TTGIAANLLGRRFVGIEKESEFIN 41


>gi|254520203|ref|ZP_05132259.1| RNA methyltransferase [Clostridium sp. 7_2_43FAA]
 gi|226913952|gb|EEH99153.1| RNA methyltransferase [Clostridium sp. 7_2_43FAA]
          Length = 453

 Score = 38.8 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 42/89 (47%), Gaps = 6/89 (6%)

Query: 206 TQKPEALLSRILVSSTKPGD-IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK- 263
           T+  E+L S +     +  D ++ D + G+GT G +A    +  +GIE+ ++ ++ A + 
Sbjct: 289 TKGAESLYSIVRDFMGESNDKVVFDLYCGTGTIGQIAASNAKKVVGIELIEEAVEAAKEN 348

Query: 264 ----RIASVQPLGNIELTVLTGKRTEPRV 288
                + + + L      ++   + +P +
Sbjct: 349 AKLNNLNNCEFLAGDVAEIIKTVKDKPDI 377


>gi|312601565|gb|ADQ90820.1| DNA adenine methylase [Mycoplasma hyopneumoniae 168]
          Length = 549

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 13/95 (13%)

Query: 11  ENQNSIFEWKDK----IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           +N N+I  + ++    I   N + +L        D +F DPPY+          D+S  +
Sbjct: 148 KNLNNISSFLNENSIEIYNKNYLEILSLAKEN--DFVFIDPPYD-------SENDNSFTN 198

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
              + W K  + E  +   +      + +   + T
Sbjct: 199 YDRNGWKKQDTLELINTLKKLNAKKVKWMFTNHST 233


>gi|108563403|ref|YP_627719.1| cyclopropane fatty acid synthase [Helicobacter pylori HPAG1]
 gi|107837176|gb|ABF85045.1| cyclopropane fatty acid synthase [Helicobacter pylori HPAG1]
          Length = 389

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 51/307 (16%), Positives = 97/307 (31%), Gaps = 29/307 (9%)

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM----LQNLNFWILNDIVWRKSNPMPNF 140
            + W     +V+  + +++  G +   F I         ++   +   I     + + + 
Sbjct: 11  FKQWKNGDYQVVFWDNSVYRNGEHLPKFTIKIHRPLKFSDIKKDMSLTIAEAYMDGVIDI 70

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS---------DWLIPICSG 191
            G   +  H   +  +     K                  +           WL    S 
Sbjct: 71  EGSMDEVMHSLYLQTNYEHLHKHDNAKAIQKPIKESSNISKHYDLGNDFYSIWLDETLSY 130

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIG 250
           S     KD + LH  Q  + L   +     KPG+ +LD   G G      A++     +G
Sbjct: 131 SCAYFKKDDDTLHAAQL-QKLDHTLKKLHLKPGEKLLDIGCGWGYLSVKAAQEYGAEVMG 189

Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV-AFNLLVERGLI-QPGQILTNA 308
           I +  +    A KR+  +     + + +L  +  + R+  F+ +V  G+    G+     
Sbjct: 190 ITISSEQYKQANKRVQELGLEDKVTIKLLNYQDLDGRLYRFDKVVSVGMFEHVGKDNLPF 249

Query: 309 QGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
                  V   G +        +H +     G    N W   Y    G L S   LR ++
Sbjct: 250 YFKKVKEVLKTGGMFL------LHSILCCFEGKT--NAWVDKYIFPGGYLPS---LREVM 298

Query: 369 RKELYNC 375
              +  C
Sbjct: 299 -SVMSEC 304


>gi|312795107|ref|YP_004028029.1| ribosomal protein L11 methyltransferase [Burkholderia rhizoxinica
           HKI 454]
 gi|312166882|emb|CBW73885.1| Ribosomal protein L11 methyltransferase (EC 2.1.1.-) [Burkholderia
           rhizoxinica HKI 454]
          Length = 299

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYI 258
           G   HPT +   L    +    + GD +LD   GSG    +A+K   +  +GI++    I
Sbjct: 145 GTGSHPTTR---LCMEWIEQHVRAGDSLLDYGCGSGILAILARKCGATPVVGIDIDPQAI 201

Query: 259 DIAT 262
           D A 
Sbjct: 202 DSAQ 205


>gi|311693164|gb|ADP96037.1| spermidine synthase [marine bacterium HP15]
          Length = 293

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 3/27 (11%)

Query: 24  IKGNSISVLEKLPAKSVDLIF---ADP 47
             G+ I  +  +   SVDLI     DP
Sbjct: 139 FFGDGIQWMRDIEPNSVDLIIIDSTDP 165


>gi|300825575|ref|ZP_07105630.1| conserved domain protein [Escherichia coli MS 119-7]
 gi|300521984|gb|EFK43053.1| conserved domain protein [Escherichia coli MS 119-7]
          Length = 51

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
            GSG +   A  L R  IG+E++    +     I
Sbjct: 1   MGSGATIKAAMGLGRRTIGVELESGRFEQTVGEI 34


>gi|261839775|gb|ACX99540.1| cyclopropane-fatty-acyl-phospholipid synthase [Helicobacter pylori
           52]
          Length = 389

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 51/307 (16%), Positives = 98/307 (31%), Gaps = 29/307 (9%)

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM----LQNLNFWILNDIVWRKSNPMPNF 140
            + W     +V+  + +++  G +   F +         ++   +   I     + + + 
Sbjct: 11  FKQWKNGDYQVVFWDNSVYRNGEHSPKFTLKIHRPLKFSDIKKDMSLTIAEAYMDGVIDI 70

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS---------DWLIPICSG 191
            G   +  H   +  +     K                  +           WL    S 
Sbjct: 71  EGSMDEVMHSLYLQTNYEHLHKHDNAKAIQKPIKESSNISKHYDLGNDFYSIWLDETLSY 130

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG-TSGAVAKKLRRSFIG 250
           S     KD + LH  Q  + L   +     KPG+ +LD   G G  S   A++     +G
Sbjct: 131 SCAYFKKDDDTLHAAQL-QKLDHTLKKLHLKPGEKLLDIGCGWGYLSIKAAQEYGAQVMG 189

Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV-AFNLLVERGLI-QPGQILTNA 308
           I +  +    A KR+  +     + + +L  +  + R+  F+ +V  G+    G+     
Sbjct: 190 ITISSEQYKQANKRVQELGLEDKVTIKLLNYQDLDGRLYRFDKVVSVGMFEHVGKDNLPF 249

Query: 309 QGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
                  V   G +        +H +     G    N W   Y    G L S   LR ++
Sbjct: 250 YFKKVKEVLKRGGMFL------LHSILCCFEGKT--NAWVDKYIFPGGYLPS---LREVM 298

Query: 369 RKELYNC 375
              +  C
Sbjct: 299 -SVMSEC 304


>gi|92113470|ref|YP_573398.1| 23S rRNA m(2)G2445 methyltransferase [Chromohalobacter salexigens
           DSM 3043]
 gi|122420217|sp|Q1QXV9|RLML_CHRSD RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|91796560|gb|ABE58699.1| 23S rRNA m(2)G-2445 methyltransferase [Chromohalobacter salexigens
           DSM 3043]
          Length = 732

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
           N +   + ++++ + +  LE   ++  DLIF DPP
Sbjct: 616 NRLDPSRHRVVRDDCLRWLETAGSE-FDLIFMDPP 649


>gi|315180171|gb|ADT87085.1| predicted N6-adenine-specific DNA methylase [Vibrio furnissii NCTC
           11218]
          Length = 707

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 20/103 (19%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + + ++ + +  LEK      DLIF DPP         +     +  +     D      
Sbjct: 594 QHQYVQADCLQWLEK-ATGQYDLIFIDPP--------TFSNSKRMEQSFDVQRDHI---- 640

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                    +   +R+L+P GT+    +  +       ++ L 
Sbjct: 641 -------QLMTNLKRILRPEGTIVFSNNKRHFKMDMEQMEALG 676


>gi|300869152|ref|ZP_07113749.1| methyltransferase type 11 [Oscillatoria sp. PCC 6506]
 gi|300332851|emb|CBN58947.1| methyltransferase type 11 [Oscillatoria sp. PCC 6506]
          Length = 440

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 42/107 (39%), Gaps = 8/107 (7%)

Query: 226 IILDPFFGSG--TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
           +ILD   GSG  +            +GI++ ++ +++A +R+       NI+   L+ + 
Sbjct: 60  VILDAGCGSGYKSLILAEANPGAKIVGIDLSEESVNLARQRLQ-YHGFENIDFQALSIEE 118

Query: 284 TEP---RVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTE 327
                 +  +    E   + P  ++      + A +  DG + +   
Sbjct: 119 LPSLNQQFDYINCDEVLYLLPDPVV--GLQAMKAVLKPDGIIRTNLH 163


>gi|83589437|ref|YP_429446.1| 50S ribosomal protein L11P methyltransferase [Moorella
           thermoacetica ATCC 39073]
 gi|123524952|sp|Q2RKY6|PRMA_MOOTA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|83572351|gb|ABC18903.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase [Moorella
           thermoacetica ATCC 39073]
          Length = 318

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 40/133 (30%), Gaps = 9/133 (6%)

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
           +P       R     E              T          E      + +I I  G   
Sbjct: 94  DPGAATVRYRLAREEEWAYGWQKYYHPVRVTKGLTIKPTWEEYTPSPGETVIEIDPGM-- 151

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEM 253
                G   HPT     L  + L    KPG  ++D   G+G     A K+    +  +++
Sbjct: 152 ---AFGTGTHPTTI---LSLQALERVLKPGARVVDVGCGTGILALAAAKMGAGAVLALDL 205

Query: 254 KQDYIDIATKRIA 266
               + +A K IA
Sbjct: 206 DPVAVAVARKNIA 218


>gi|89073170|ref|ZP_01159709.1| type I site-specific deoxyribonuclease [Photobacterium sp. SKA34]
 gi|89051123|gb|EAR56580.1| type I site-specific deoxyribonuclease [Photobacterium sp. SKA34]
          Length = 529

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS----FIGIEMKQDYIDIAT 262
            LL++++    +  + + DP  GSG+    A +  R+      G E   +  ++A 
Sbjct: 210 KLLAKLVTLGNEDIESVYDPTCGSGSLLLQAARESRNLDVKCYGQEQNPNTYNLAR 265


>gi|300309728|ref|YP_003773820.1| 50S ribosomal protein L11 methyltransferase [Herbaspirillum
           seropedicae SmR1]
 gi|300072513|gb|ADJ61912.1| 50S ribosomal subunit protein L11 methyltransferase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 304

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYI 258
           G   HPT +   L    L ++      +LD   GSG    VA K+     IG+++    +
Sbjct: 146 GTGSHPTTR---LCMEWLEANATEAGTLLDYGCGSGILALVAAKIGVPQVIGVDIDPQAL 202

Query: 259 DIA 261
           + A
Sbjct: 203 EAA 205


>gi|331091343|ref|ZP_08340183.1| 50S ribosomal protein L11 methyltransferase [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330404504|gb|EGG84048.1| 50S ribosomal protein L11 methyltransferase [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 317

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 55/169 (32%), Gaps = 20/169 (11%)

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
            +        + Y  +   + +  E      D +I             G  +H T     
Sbjct: 108 WVNNWKKYFHQFYVDDVLIIPSWEEVKPEDEDKMI----IHIDPGTAFGTGMHETT---Q 160

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF-IGIEMKQDYIDIATKRIASVQP 270
           L  R +     P   ILD   GSG  G +A K    + +G ++    ID   +       
Sbjct: 161 LCIRQIRKYVTPQTRILDVGCGSGILGMLALKFGAEYSVGTDLDPCAIDATYE------- 213

Query: 271 LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
                + V   ++++  V    +++   +Q  ++       + A + AD
Sbjct: 214 ----NMEVNGIEKSQYEVMIGNIIDDKEVQD-KVGYEKYDIVVANILAD 257


>gi|320450558|ref|YP_004202654.1| ribosomal protein L11 methyltransferase [Thermus scotoductus SA-01]
 gi|320150727|gb|ADW22105.1| ribosomal protein L11 methyltransferase [Thermus scotoductus SA-01]
          Length = 254

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 5/119 (4%)

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
               W               G   H T +   L    L    +PG+ +LD   GSG    
Sbjct: 80  PWHPWEGEGIPLVIEPGMAFGTGHHETTR---LALSALARHLRPGERVLDLGTGSGILAI 136

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGL 298
            A KL    +G+++ +  +  A +   + +    +     + +   P   FNL+V    
Sbjct: 137 AAAKLGGKALGVDIDETVLPQAEE--NARRNGVGVRFLPGSLEEALPYGPFNLMVANLF 193


>gi|240047738|ref|YP_002961126.1| hypothetical protein MCJ_006280 [Mycoplasma conjunctivae HRC/581]
 gi|239985310|emb|CAT05323.1| HYPOTHETICAL Ribosomal RNA small subunit methyltransferase D
           [Mycoplasma conjunctivae]
          Length = 184

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 20/27 (74%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPP 48
           +++  N+++VL+K+  +  DLIF DPP
Sbjct: 94  QVVNQNALNVLDKIKNQKFDLIFLDPP 120


>gi|218440023|ref|YP_002378352.1| methyltransferase [Cyanothece sp. PCC 7424]
 gi|218172751|gb|ACK71484.1| methyltransferase [Cyanothece sp. PCC 7424]
          Length = 180

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY 49
           +I+G+ ++ +  L  K  D I+ DPPY
Sbjct: 92  VIRGDVLTKMSSLAGKKFDRIYFDPPY 118


>gi|58865224|emb|CAI52507.1| DNA-methyltransferase [Geobacillus stearothermophilus]
          Length = 346

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 63/166 (37%), Gaps = 14/166 (8%)

Query: 5   NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL 64
             L + +   +I   +++    +S  ++ +L     D+I+ DPPYN +     Y    ++
Sbjct: 183 KPLELIKLDVTINHKENRSFNKDSNELIRELEG---DIIYIDPPYNSRQYMPNYHILETI 239

Query: 65  VDAVTDSWDKFSSFEAYDAF------TRAWLLACRRVLKPNGTLWVIGSYHNIFRIG--T 116
               +      +    Y  F       +    A   +++      ++ SY N   +   T
Sbjct: 240 ARYDSPEIYGVTGLRPYKEFKSKYCNKKQVEKAFADLIENANFEHIVVSYSNEGIMSEET 299

Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGR---RFQNAHETLIWASPSP 159
           +L+ L  + + D V     P   ++G+   +  N HE + +A    
Sbjct: 300 ILEILCTYAVADSVKVYKYPYRRYKGKLSAKEHNLHELIFYAKKRK 345


>gi|323697914|ref|ZP_08109826.1| ribosomal L11 methyltransferase [Desulfovibrio sp. ND132]
 gi|323457846|gb|EGB13711.1| ribosomal L11 methyltransferase [Desulfovibrio desulfuricans ND132]
          Length = 287

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 3/101 (2%)

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
           LD   GSG  G    KL  + IG+++    +  A + +A+     ++ L V +    EP 
Sbjct: 152 LDLGTGSGILGIGLSKLGLTGIGLDIDPQAVVCAVENVAANGVTESMRLAVGSIDCVEPG 211

Query: 288 VAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTEL 328
             F+L+V    I  G  L    G+I A V   GTL+    L
Sbjct: 212 RTFDLVVAN--ILSGP-LIEMAGDIVARVRPGGTLVLSGIL 249


>gi|313199799|ref|YP_004038457.1| 50S ribosomal protein L11 methyltransferase [Methylovorus sp.
           MP688]
 gi|312439115|gb|ADQ83221.1| ribosomal protein L11 methyltransferase [Methylovorus sp. MP688]
          Length = 295

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT     L    L    +    +LD   GSG     A KL     +G+++    I
Sbjct: 143 GTGSHPTT---HLCLAWLADHVRKDLTVLDYGCGSGILAIAASKLGAGKVVGVDIDPQAI 199

Query: 259 D 259
            
Sbjct: 200 Q 200


>gi|225390610|ref|ZP_03760334.1| hypothetical protein CLOSTASPAR_04365 [Clostridium asparagiforme
           DSM 15981]
 gi|225043328|gb|EEG53574.1| hypothetical protein CLOSTASPAR_04365 [Clostridium asparagiforme
           DSM 15981]
          Length = 425

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 16/27 (59%), Gaps = 3/27 (11%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYN 50
              ++  +++K+     DL++ DPPYN
Sbjct: 262 YNEDTNELMKKIE---ADLVYIDPPYN 285


>gi|187931840|ref|YP_001891825.1| 50S ribosomal protein L11 methyltransferase [Francisella tularensis
           subsp. mediasiatica FSC147]
 gi|187712749|gb|ACD31046.1| 50S ribosomal protein L11 methyltransferase [Francisella tularensis
           subsp. mediasiatica FSC147]
          Length = 281

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 73/224 (32%), Gaps = 29/224 (12%)

Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
           Y N   I T++ N+     N I                  ++E +           + ++
Sbjct: 47  YENHHDIDTIIANIKQKFENIIESEI--------------SYEII---KDQQWEAAWLYD 89

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSSTKPGD 225
           Y+ ++  N ++ +  +W  P           D          E   +    L        
Sbjct: 90  YEPIEIGN-NIVVYPNWRQPPQDNKHTYIIVDPSIAFGCGNHETTKMCLEWLEQHVSKDT 148

Query: 226 IILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
             LD   G+G     A KL   +  GI++  + I+ +   I + Q     + T  +    
Sbjct: 149 TALDYGCGTGVLAIGAVKLGAKYAEGIDIDPNSIESS---IKNAQENDVTDKTHFSDN-- 203

Query: 285 EPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTEL 328
            P   F+L+V         +L +  GNI+ ++   G L     +
Sbjct: 204 PPTQQFDLVVANIF---SNVLISLVGNITTSLKKGGRLALSGII 244


>gi|121533613|ref|ZP_01665440.1| protein of unknown function DUF1156 [Thermosinus carboxydivorans
           Nor1]
 gi|121307604|gb|EAX48519.1| protein of unknown function DUF1156 [Thermosinus carboxydivorans
           Nor1]
          Length = 932

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
             I+ ++      + DPF G G+    A++L  +    ++    + + TK +  + P   
Sbjct: 103 KEIMKATNNNPPPVYDPFCGGGSIPLEAQRLGLAAYASDLNPVAV-LITKALIEIPPRFA 161

Query: 274 IELTVLTGKRTE 285
               V    R +
Sbjct: 162 GRAPVNPEARRQ 173


>gi|50121459|ref|YP_050626.1| 23S rRNA m(2)G2445 methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
 gi|81827096|sp|Q6D459|RLML_ERWCT RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|49611985|emb|CAG75434.1| putative RNA methylase [Pectobacterium atrosepticum SCRI1043]
          Length = 705

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 20/102 (19%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++I+ + +S L     +  D+IF DPP         +     + ++  
Sbjct: 579 NLRVNGLTGRQHRLIQADCLSWLHN-GHEQFDVIFIDPP--------TFSNSKRMEESFD 629

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
              D             A +   +R+L+  GT+    +    
Sbjct: 630 VQRDHL-----------ALMKDLKRLLRRGGTIMFSNNKRGF 660


>gi|327401579|ref|YP_004342418.1| ribosomal L11 methyltransferase [Archaeoglobus veneficus SNP6]
 gi|327317087|gb|AEA47703.1| ribosomal L11 methyltransferase [Archaeoglobus veneficus SNP6]
          Length = 201

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 18/47 (38%)

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
               ++ D   G+G     A  L    +G ++  + + +A K    V
Sbjct: 48  DEPRLVYDLGCGTGMLAIAASLLGMDAVGFDIDIEALKVARKNAKKV 94


>gi|308183144|ref|YP_003927271.1| cyclopropane fatty acid synthase [Helicobacter pylori PeCan4]
 gi|308184778|ref|YP_003928911.1| cyclopropane fatty acid synthase [Helicobacter pylori SJM180]
 gi|308060698|gb|ADO02594.1| cyclopropane fatty acid synthase [Helicobacter pylori SJM180]
 gi|308065329|gb|ADO07221.1| cyclopropane fatty acid synthase [Helicobacter pylori PeCan4]
          Length = 389

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 50/307 (16%), Positives = 97/307 (31%), Gaps = 29/307 (9%)

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM----LQNLNFWILNDIVWRKSNPMPNF 140
            + W     +V+  + +++  G +   F +         ++   +   I     + + + 
Sbjct: 11  FKQWKNGDYQVVFWDNSVYRNGEHSPKFTLKIHRPLKFSDIKKDMSLTIAEAYMDGVIDI 70

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS---------DWLIPICSG 191
            G   +  H   +  +     K                  +           WL    S 
Sbjct: 71  EGSMDEVMHSLYLQTNYEHLHKHDNAKAIQKPIKESSNISKHYDLGNDFYSIWLDETLSY 130

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIG 250
           S     KD + LH  Q  + L   +     KPG+ +LD   G G      A++     +G
Sbjct: 131 SCAYFKKDDDTLHAAQL-QKLDHTLKKLHLKPGEKLLDIGCGWGYLSVKAAQEYGAEVMG 189

Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV-AFNLLVERGLI-QPGQILTNA 308
           I +  +    A KR+  +     + + +L  +  + R+  F+ +V  G+    G+     
Sbjct: 190 ITISSEQYKQANKRVQELGLEDKVTIKLLNYQDLDGRLYRFDKVVSVGMFEHVGKDNLPF 249

Query: 309 QGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
                  V   G +        +H +     G    N W   Y    G L S   LR ++
Sbjct: 250 YFKKVKEVLKTGGMFL------LHSILCCFEGKT--NAWVDKYIFPGGYLPS---LREVM 298

Query: 369 RKELYNC 375
              +  C
Sbjct: 299 -SVMSEC 304


>gi|294628562|ref|ZP_06707122.1| ubiquinone/menaquinone biosynthesis methyltransferase [Streptomyces
           sp. e14]
 gi|292831895|gb|EFF90244.1| ubiquinone/menaquinone biosynthesis methyltransferase [Streptomyces
           sp. e14]
          Length = 208

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 46/113 (40%), Gaps = 9/113 (7%)

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA---SVQP 270
            R+          +LD   G+G+   +A +      G+++ +  I+ A  ++A   +V  
Sbjct: 45  ERLRGWLPARPADVLDLGCGTGSLSLLAAEQGHRVTGVDLSEAMIERARAKLAGRDAVFL 104

Query: 271 LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
            G+     +  +R      F++++ R ++        A G+  + +   G L+
Sbjct: 105 PGDAARPPVGERR------FDVVLVRHVLWALSDPAGALGHWRSLLRPSGRLV 151


>gi|258593872|emb|CBE70213.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
          Length = 268

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSG-TSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           Q     + RI+    KP  I LD   G+G  +  +A++  R  +GI++    I+ A +R
Sbjct: 39  QVYRETVERII--CEKPDGIALDLGCGTGKQTVLLARRAGRV-VGIDISDQMIEAARQR 94


>gi|237737638|ref|ZP_04568119.1| ribosomal protein L11 methyltransferase [Fusobacterium mortiferum
           ATCC 9817]
 gi|229419518|gb|EEO34565.1| ribosomal protein L11 methyltransferase [Fusobacterium mortiferum
           ATCC 9817]
          Length = 309

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 61/182 (33%), Gaps = 11/182 (6%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD-----GEKLHPTQ 207
            +       +     Y   +  +E   ++  W        E +   D     G   HPT 
Sbjct: 99  FYEYDEEDYQNSWKKYLFPEKVSEKFVVKPTWREYTPEADELIIELDPGRAFGTGSHPTT 158

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATKRIA 266
              +L  +++  +   GD ++D   GSG     A +L  S I G ++ +  ++ A + + 
Sbjct: 159 ---SLCLKLMEENISEGDSVIDVGTGSGILMIAADRLGASEIYGTDIDELAVESAKENLE 215

Query: 267 SVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGT 326
             +              +        +V   ++    +L     +IS  V  +G +I   
Sbjct: 216 LNKISEEKAKVYKGDLISVVENKKFDVVVANIL--ADVLLILLHDISKVVKPNGKIIFSG 273

Query: 327 EL 328
            +
Sbjct: 274 II 275


>gi|189485129|ref|YP_001956070.1| type III restriction-modification system methylase subunit
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
 gi|170287088|dbj|BAG13609.1| type III restriction-modification system methylase subunit
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
          Length = 866

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYR 59
           + + LA+ +N +   +   ++I   +   L  L     + +  I+ DPPYN   +  +Y 
Sbjct: 355 ELDILALFDNLDEALDG--RLIHSENYQALNTLQERYKEKIQCIYIDPPYNTNSSPIIYI 412

Query: 60  PDHSLVDAVTDSWDKF 75
            ++     +T   ++ 
Sbjct: 413 NNYKDSSWLTIIHNRM 428


>gi|154505794|ref|ZP_02042532.1| hypothetical protein RUMGNA_03334 [Ruminococcus gnavus ATCC 29149]
 gi|153793812|gb|EDN76232.1| hypothetical protein RUMGNA_03334 [Ruminococcus gnavus ATCC 29149]
          Length = 405

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/197 (12%), Positives = 59/197 (29%), Gaps = 19/197 (9%)

Query: 91  ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
             +R+   +  ++   + H  +    ++     W                 G R +N  E
Sbjct: 103 EIQRIPGISSVVYFAAALHTSWEDAALVSLHGRWQNWIYEAEHHAKTFLLLGGRKENLKE 162

Query: 151 TLIWA----------SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            L++                 +   F+    +   ED +      +     S+++     
Sbjct: 163 KLLYYGLEDLTVHIGKNFSYPQEQIFSKTVSELTEEDAEGLCIVCLENPHPSQKVCRHLK 222

Query: 201 EKLH-----PTQKPEALLSRILVSSTKPGDIIL-DPFFGSGTSGA--VAKKLRRSFIGIE 252
           ++       P  K E + +  +       D +L D   G+G+       +        IE
Sbjct: 223 DEAFTRGNVPMTK-EEVRTICIAKLDLEKDAVLYDVGAGTGSVAVEAACQDGSIRVYAIE 281

Query: 253 MKQDYIDIATKRIASVQ 269
              + I++  K +  ++
Sbjct: 282 KNPEGIELIRKNVQKLR 298


>gi|288871274|ref|ZP_06117059.2| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium hathewayi
           DSM 13479]
 gi|288864049|gb|EFC96347.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium hathewayi
           DSM 13479]
          Length = 514

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           +C    R+ +K   +++P Q  E L  + + ++     + ++D + G GT G VA +   
Sbjct: 327 LCGFRFRISSKSFYQVNPVQT-EVLYRKAIELAGLTGKETVIDAYCGIGTIGIVASQEAD 385

Query: 247 SFIGIEMKQDYIDIATK 263
             IG+E+ +D +  A +
Sbjct: 386 RVIGVELNRDAVRDAAQ 402


>gi|229163257|ref|ZP_04291212.1| Ribosomal protein L11 methyltransferase [Bacillus cereus R309803]
 gi|228620320|gb|EEK77191.1| Ribosomal protein L11 methyltransferase [Bacillus cereus R309803]
          Length = 312

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 56/173 (32%), Gaps = 26/173 (15%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-------------HPTQKPEALL 213
           ++             SD    + +  E   +   EK+             HPT     + 
Sbjct: 109 DWATAWKKYYHPVQISDTFTIVPTWEEYTPSSPDEKIIELDPGMAFGTGTHPTTT---MC 165

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATK--RIASVQP 270
            R L  + +PGD I+D   GSG     A KL  S +   ++    ++ A    R+     
Sbjct: 166 IRALEKTVQPGDTIIDVGTGSGVLSIAAAKLGASAVQAYDLDPVAVESAEMNVRLNKTDD 225

Query: 271 LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
           + ++    L      P      L+   L+    +L       +A V   G L 
Sbjct: 226 IVSVGQNSLLEGIEGPV----DLIVANLLAEIILLFPED---AARVVKSGGLF 271


>gi|225709698|gb|ACO10695.1| methyltransferase WBSCR22 [Caligus rogercresseyi]
          Length = 283

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 26/49 (53%)

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           +L   ++    +LD   GSG SG V ++    ++G+++    + +A +R
Sbjct: 45  LLNLPSEVPCFVLDLGCGSGLSGEVVEESGHYWVGMDISGSMLGVARER 93


>gi|150015720|ref|YP_001307974.1| ribosomal protein L11 methyltransferase [Clostridium beijerinckii
           NCIMB 8052]
 gi|189037693|sp|A6LRN8|PRMA_CLOB8 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|149902185|gb|ABR33018.1| ribosomal protein L11 methyltransferase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 314

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 43/116 (37%), Gaps = 10/116 (8%)

Query: 161 AKGYTFNYDALKAANEDVQMRSDWLI--PICSGSERLRNKDGEKLHP-------TQKPEA 211
            K +  ++             +D ++  PI    E+   +   +L P       T +   
Sbjct: 106 KKMHEEDWANNWKQYYKPVKITDKIVVKPIWEEYEKNDEELIIELDPGMAFGTGTHETTR 165

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIA 266
           +  + L    KP   + D   GSG     A KL  +  +G+++    +D + + I+
Sbjct: 166 MCIQALDKYVKPDTTVFDVGCGSGILAIAAAKLGAKHVVGVDLDPVAVDSSKENIS 221


>gi|322376702|ref|ZP_08051195.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           M334]
 gi|321282509|gb|EFX59516.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           M334]
          Length = 451

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 57/146 (39%), Gaps = 8/146 (5%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGD 225
           N +A+           D++     G++   +        T+  E L    +  ++ K  D
Sbjct: 247 NTNAIFGKEWHTLYGQDFITDQMLGNDYQISGPAFYQVNTKMAEKLYQTAIDFAALKSDD 306

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           +++D + G GT G    KL +   G+E+  + ++ + K  A +  + N      T +   
Sbjct: 307 VVIDAYSGIGTIGLSVAKLVKEVYGVEVIPEAVENSEKN-AQLNNISNAHYVCDTAEN-- 363

Query: 286 PRVAFNLLVERGLIQPGQILTNAQGN 311
              A    ++ G IQP  IL +    
Sbjct: 364 ---AMKSWLKDG-IQPSLILVDPPRK 385


>gi|224457793|ref|ZP_03666266.1| transposase [Francisella tularensis subsp. tularensis MA00-2987]
 gi|254371240|ref|ZP_04987242.1| predicted protein [Francisella tularensis subsp. tularensis FSC033]
 gi|151569480|gb|EDN35134.1| predicted protein [Francisella tularensis subsp. tularensis FSC033]
 gi|282159837|gb|ADA79228.1| Transposase [Francisella tularensis subsp. tularensis NE061598]
          Length = 147

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 29/102 (28%)

Query: 224 GDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQ---------DYID--------- 259
            DIILD F GSGT G    +L       R +I  ++ +          +           
Sbjct: 10  KDIILDFFAGSGTIGDAVMQLNAEDGGKRKYILAQLDELIDEKKEAYKFCQDNGFEPMIS 69

Query: 260 -IATKRI----ASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
            I  +R+      ++     E      K+   +     L E+
Sbjct: 70  SITIERLNRAGEKIKADIQAEFDAENSKKKPNQEKLVELREK 111


>gi|15677697|ref|NP_274858.1| ribosomal protein L11 methyltransferase [Neisseria meningitidis
           MC58]
 gi|38605482|sp|Q9JXW2|PRMA_NEIMB RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|7227119|gb|AAF42196.1| ribosomal protein L11 methyltransferase [Neisseria meningitidis
           MC58]
 gi|316985471|gb|EFV64418.1| ribosomal protein L11 methyltransferase [Neisseria meningitidis
           H44/76]
 gi|325133507|gb|EGC56170.1| ribosomal protein L11 methyltransferase [Neisseria meningitidis
           M13399]
 gi|325139522|gb|EGC62062.1| ribosomal protein L11 methyltransferase [Neisseria meningitidis
           CU385]
 gi|325143757|gb|EGC66074.1| ribosomal protein L11 methyltransferase [Neisseria meningitidis
           M01-240013]
 gi|325200920|gb|ADY96375.1| ribosomal protein L11 methyltransferase [Neisseria meningitidis
           H44/76]
 gi|325206774|gb|ADZ02227.1| ribosomal protein L11 methyltransferase [Neisseria meningitidis
           M04-240196]
          Length = 295

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF-IGIEMKQDYI 258
           G   HPT +   L  + L +  K G+ +LD   GSG     A KL   F +G+++ +  +
Sbjct: 143 GTGSHPTTR---LCLKWLDTQLKNGESVLDYGCGSGILTIAALKLGAGFAVGVDIDEQAV 199

Query: 259 DIATK 263
                
Sbjct: 200 RAGKD 204


>gi|218767557|ref|YP_002342069.1| ribosomal protein L11 methyltransferase [Neisseria meningitidis
           Z2491]
 gi|38605480|sp|Q9JW08|PRMA_NEIMA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|121051565|emb|CAM07863.1| putative ribosomal protein L11 methyltransferase [Neisseria
           meningitidis Z2491]
 gi|319409821|emb|CBY90129.1| ribosomal protein L11 methyltransferase (L11 Mtase) [Neisseria
           meningitidis WUE 2594]
          Length = 295

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF-IGIEMKQDYI 258
           G   HPT +   L  + L +  K G+ +LD   GSG     A KL   F +G+++ +  +
Sbjct: 143 GTGSHPTTR---LCLKWLDTQLKNGESVLDYGCGSGILTIAALKLGAGFAVGVDIDEQAV 199

Query: 259 DIATK 263
                
Sbjct: 200 RAGKD 204


>gi|330447183|ref|ZP_08310833.1| 16S rRNA m2G966 methyltransferase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491374|dbj|GAA05330.1| 16S rRNA m2G966 methyltransferase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 201

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSV-DLIFADPPY 49
           + +K +  + +N  ++      ++ G+S++ L +    S  DLIF DPP+
Sbjct: 92  LDKKAANQLEQNLKTVGATSATVVNGDSLAFLSQ--PGSAHDLIFIDPPF 139


>gi|114765726|ref|ZP_01444824.1| trans-aconitate methyltransferase [Pelagibaca bermudensis HTCC2601]
 gi|114541943|gb|EAU44978.1| trans-aconitate methyltransferase [Roseovarius sp. HTCC2601]
          Length = 237

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           P   ++D   GSG  G   ++L R  +G+++ +  +D A +
Sbjct: 15  PEGAVIDLGCGSGAVGPALQQLGRKLVGVDLSRAMLDQARR 55


>gi|57242193|ref|ZP_00370132.1| modification methylase [Campylobacter upsaliensis RM3195]
 gi|57016873|gb|EAL53655.1| modification methylase [Campylobacter upsaliensis RM3195]
          Length = 406

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIAT 262
           +P      +   +L         +LDP+ GSG+S     +   + F+G ++    I I+ 
Sbjct: 34  YPATMLPQIGYELLKEFKAKKTALLDPYCGSGSSFISGLEYGIKHFVGFDLNPLAILISK 93

Query: 263 KRIASVQ 269
            ++  ++
Sbjct: 94  AKLNYIE 100


>gi|308175551|ref|YP_003922256.1| hypothetical protein BAMF_3660 [Bacillus amyloliquefaciens DSM 7]
 gi|307608415|emb|CBI44786.1| RBAM_035500 [Bacillus amyloliquefaciens DSM 7]
 gi|328555529|gb|AEB26021.1| hypothetical protein BAMTA208_19365 [Bacillus amyloliquefaciens
           TA208]
 gi|328913902|gb|AEB65498.1| Uncharacterized methyltransferase [Bacillus amyloliquefaciens LL3]
          Length = 226

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 65/166 (39%), Gaps = 17/166 (10%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
             E L   +L    K    +LD   G+G  GA  +    +  GIE   +  + A  +++ 
Sbjct: 14  YYEGLNPYLLKKIDKNWRTVLDVGCGTGNLGAAIEDRGITVYGIEAYPEAAEKAENKLSH 73

Query: 268 VQPLGNIELTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNAQGNISATVCADGT-LISG 325
           V   G+IE  +L  K  +   + F  ++E  L+ P  +L      +   +  DGT L   
Sbjct: 74  VL-CGDIESAILPYKSEQFDCMLFGDVLEH-LVDPWSVL----KKLRPYLKKDGTVLACI 127

Query: 326 TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
             +G I  V   ++G      W +    +   L     LR   R+E
Sbjct: 128 PNVGHISVVLELLAGK-----WTY----RDAGLMDQTHLRFFTREE 164


>gi|326772742|ref|ZP_08232026.1| adenine-specific DNA methylase containing a zn-ribbon [Actinomyces
           viscosus C505]
 gi|326637374|gb|EGE38276.1| adenine-specific DNA methylase containing a zn-ribbon [Actinomyces
           viscosus C505]
          Length = 941

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 1/74 (1%)

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
             I  S+ +    +LDPF G G+    A++L       ++    + +  K +  + P   
Sbjct: 115 EEIRRSTGEEPPAVLDPFAGGGSIPLEAQRLGLEAHASDLNPVAV-LINKALIEIPPRFA 173

Query: 274 IELTVLTGKRTEPR 287
               V  G     R
Sbjct: 174 GRAPVFPGADDGTR 187


>gi|253997735|ref|YP_003049798.1| 50S ribosomal protein L11 methyltransferase [Methylovorus sp.
           SIP3-4]
 gi|253984414|gb|ACT49271.1| ribosomal protein L11 methyltransferase [Methylovorus sp. SIP3-4]
          Length = 295

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 4/61 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT     L    L         +LD   GSG     A KL     +G+++    I
Sbjct: 143 GTGSHPTT---HLCLAWLADHVHKDLTVLDYGCGSGILAIAASKLGAGKVVGVDIDPQAI 199

Query: 259 D 259
            
Sbjct: 200 Q 200


>gi|20808214|ref|NP_623385.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Thermoanaerobacter
           tengcongensis MB4]
 gi|254479579|ref|ZP_05092891.1| 23S rRNA (uracil-5-)-methyltransferase [Carboxydibrachium pacificum
           DSM 12653]
 gi|50401615|sp|Q8R933|Y1797_THETN RecName: Full=Uncharacterized RNA methyltransferase TTE1797
 gi|20516809|gb|AAM24989.1| SAM-dependent methyltransferases related to tRNA
           (uracil-5-)-methyltransferase [Thermoanaerobacter
           tengcongensis MB4]
 gi|214034482|gb|EEB75244.1| 23S rRNA (uracil-5-)-methyltransferase [Carboxydibrachium pacificum
           DSM 12653]
          Length = 450

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 21/37 (56%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           I D + G+GT G V   L R  IGIE+ ++ +  A +
Sbjct: 310 IFDLYCGTGTIGIVMAPLARKVIGIELVEEAVFSAKE 346


>gi|329915400|ref|ZP_08276255.1| Ribosomal protein L11 methyltransferase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327544926|gb|EGF30275.1| Ribosomal protein L11 methyltransferase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 307

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L    L         +LD   GSG    VA KL   + IG+++    I
Sbjct: 148 GTGSHPTTR---LCMEWLEVHAPAELSVLDYGCGSGILALVASKLGAATVIGVDIDPQAI 204

Query: 259 DIA 261
           + A
Sbjct: 205 ESA 207


>gi|289740771|gb|ADD19133.1| putative protein carboxyl methylase [Glossina morsitans morsitans]
          Length = 275

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 8/82 (9%)

Query: 191 GSERLRNKDGEKLHPT-----QKPEALLSR---ILVSSTKPGDIILDPFFGSGTSGAVAK 242
             E   N D  K + +     +    +  R   +L  +     +ILD   GSG SG+V +
Sbjct: 10  PPEIFYNNDEAKKYSSNSRIIEIQVEMAERALELLALNEDESYLILDVGCGSGLSGSVLE 69

Query: 243 KLRRSFIGIEMKQDYIDIATKR 264
               ++IG+++ +  +DIA  R
Sbjct: 70  DSGHAWIGVDISRPMLDIAVDR 91


>gi|118602387|ref|YP_903602.1| putative methyltransferase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567326|gb|ABL02131.1| 16S rRNA m(2)G-966 methyltransferase [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
          Length = 192

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 24/46 (52%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
           ++ +N+  +   +  I   ++++ L K   ++ D IF DPP+N   
Sbjct: 87  SLKKNKTLLKTNRISIFNQDALNFLSKKSTQTFDFIFLDPPFNKNY 132


>gi|313892044|ref|ZP_07825644.1| cyclopropane-fatty-acyl-phospholipid synthase [Dialister
           microaerophilus UPII 345-E]
 gi|313119558|gb|EFR42750.1| cyclopropane-fatty-acyl-phospholipid synthase [Dialister
           microaerophilus UPII 345-E]
          Length = 388

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 14/191 (7%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA-VAK 242
           WL P  S S      + + L   Q+   +   +     + G  +LD   G G      AK
Sbjct: 126 WLDPSMSYSCAYFKNEKDTLEEAQRN-KVHYILEKLHLEKGMKLLDIGCGWGYLLIEAAK 184

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR-VAFNLLVERGLI-Q 300
           K   S  G  + ++      +RI ++     + + ++  +  E + + F+ +V  G+I  
Sbjct: 185 KYGVSGYGCTLSKEQCKKGRERIKALGLEDKVHIDLVDYRDLESKGLMFDRIVSVGMIEH 244

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
            G+   +     +  +  DG +        +H +     G +  N W   Y    G L S
Sbjct: 245 VGRSNYSLYMETANHLLCDGGVFL------LHYISGNTEGVK--NPWMRKYIFPGGTLPS 296

Query: 361 INTLRILVRKE 371
           +    ++ R  
Sbjct: 297 LRE--MIYRAY 305


>gi|315230569|ref|YP_004071005.1| hypothetical protein TERMP_00805 [Thermococcus barophilus MP]
 gi|315183597|gb|ADT83782.1| hypothetical protein TERMP_00805 [Thermococcus barophilus MP]
          Length = 364

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 47/147 (31%), Gaps = 13/147 (8%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQK-----PEALLSRILVSSTKPGDIILDPFFGSGTSG 238
           W+      ++    K  +   P Q+     P  L   ++  +       LDPF G GT  
Sbjct: 144 WVGETIKITDPFELKKLDVERPVQRAIFSIPPRLARIMVNLTEIRQGNFLDPFCGIGTIV 203

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIA------SVQPLGNIELTVLTGKRTEPRVAFNL 292
                   +  G +     I  A + +        V+   ++E+      +   R  F+ 
Sbjct: 204 QEFLLQGLNAYGSDSDPKAIKGAKENLKWLKKEFKVKKTAHLEVCDARKLKRCFRTKFDA 263

Query: 293 LVERGLIQPGQILTNAQGNISATVCAD 319
           +V    +  G+ L        A   A+
Sbjct: 264 IVTEPWL--GKPLKYNPTRGEAIQMAN 288


>gi|72080950|ref|YP_288008.1| DNA adenine methylase [Mycoplasma hyopneumoniae 7448]
 gi|71914074|gb|AAZ53985.1| DNA adenine methylase [Mycoplasma hyopneumoniae 7448]
          Length = 549

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 13/95 (13%)

Query: 11  ENQNSIFEWKDK----IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           +N N+I  + ++    I   N + +L        D +F DPPY+          D+S  +
Sbjct: 148 KNLNNISSFLNENSIEIYNKNYLEILSLAKEN--DFVFIDPPYD-------SENDNSFTN 198

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
              + W K  + E  +   +      + +   + T
Sbjct: 199 YDRNGWKKQDTLELINTLKKLNAKKVKWMFTNHST 233


>gi|30264383|ref|NP_846760.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           Ames]
 gi|47529834|ref|YP_021183.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49187207|ref|YP_030459.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           Sterne]
 gi|49481320|ref|YP_038367.1| ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|52141191|ref|YP_085638.1| ribosomal protein L11 methyltransferase [Bacillus cereus E33L]
 gi|65321685|ref|ZP_00394644.1| COG2264: Ribosomal protein L11 methylase [Bacillus anthracis str.
           A2012]
 gi|118479480|ref|YP_896631.1| ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           str. Al Hakam]
 gi|165872039|ref|ZP_02216679.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           A0488]
 gi|167634595|ref|ZP_02392915.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           A0442]
 gi|167638656|ref|ZP_02396932.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           A0193]
 gi|170687478|ref|ZP_02878695.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           A0465]
 gi|170707375|ref|ZP_02897829.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           A0389]
 gi|177653293|ref|ZP_02935545.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           A0174]
 gi|190567039|ref|ZP_03019955.1| ribosomal protein L11 methyltransferase [Bacillus anthracis
           Tsiankovskii-I]
 gi|196034488|ref|ZP_03101897.1| ribosomal protein L11 methyltransferase [Bacillus cereus W]
 gi|196039312|ref|ZP_03106618.1| ribosomal protein L11 methyltransferase [Bacillus cereus
           NVH0597-99]
 gi|218905449|ref|YP_002453283.1| ribosomal protein L11 methyltransferase [Bacillus cereus AH820]
 gi|225866293|ref|YP_002751671.1| ribosomal protein L11 methyltransferase [Bacillus cereus 03BB102]
 gi|227817088|ref|YP_002817097.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           CDC 684]
 gi|228916944|ref|ZP_04080505.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228929356|ref|ZP_04092380.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228935632|ref|ZP_04098446.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228948025|ref|ZP_04110310.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229093382|ref|ZP_04224487.1| Ribosomal protein L11 methyltransferase [Bacillus cereus Rock3-42]
 gi|229123851|ref|ZP_04253044.1| Ribosomal protein L11 methyltransferase [Bacillus cereus 95/8201]
 gi|229186552|ref|ZP_04313713.1| Ribosomal protein L11 methyltransferase [Bacillus cereus BGSC 6E1]
 gi|229604151|ref|YP_002868601.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           A0248]
 gi|254684069|ref|ZP_05147929.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721903|ref|ZP_05183692.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           A1055]
 gi|254736417|ref|ZP_05194123.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           Western North America USA6153]
 gi|254741455|ref|ZP_05199142.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           Kruger B]
 gi|254750893|ref|ZP_05202932.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           Vollum]
 gi|254757779|ref|ZP_05209806.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           Australia 94]
 gi|300118698|ref|ZP_07056426.1| ribosomal protein L11 methyltransferase [Bacillus cereus SJ1]
 gi|301055804|ref|YP_003794015.1| ribosomal protein L11 methyltransferase [Bacillus anthracis CI]
 gi|38605213|sp|Q81LS4|PRMA_BACAN RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|60390326|sp|Q634M9|PRMA_BACCZ RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|60390445|sp|Q6HDK9|PRMA_BACHK RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|166223395|sp|A0RIT1|PRMA_BACAH RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|226710051|sp|B7JN37|PRMA_BACC0 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|254782826|sp|C3P8L8|PRMA_BACAA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|254782827|sp|C3L5R5|PRMA_BACAC RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|254782828|sp|C1ESK6|PRMA_BACC3 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|30259041|gb|AAP28246.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           Ames]
 gi|47504982|gb|AAT33658.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49181134|gb|AAT56510.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           Sterne]
 gi|49332876|gb|AAT63522.1| ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|51974660|gb|AAU16210.1| ribosomal protein L11 methyltransferase [Bacillus cereus E33L]
 gi|118418705|gb|ABK87124.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase [Bacillus
           thuringiensis str. Al Hakam]
 gi|164712170|gb|EDR17707.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           A0488]
 gi|167513504|gb|EDR88874.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           A0193]
 gi|167530047|gb|EDR92782.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           A0442]
 gi|170127619|gb|EDS96492.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           A0389]
 gi|170668673|gb|EDT19419.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           A0465]
 gi|172081575|gb|EDT66647.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           A0174]
 gi|190562030|gb|EDV15999.1| ribosomal protein L11 methyltransferase [Bacillus anthracis
           Tsiankovskii-I]
 gi|195993030|gb|EDX56989.1| ribosomal protein L11 methyltransferase [Bacillus cereus W]
 gi|196029939|gb|EDX68540.1| ribosomal protein L11 methyltransferase [Bacillus cereus
           NVH0597-99]
 gi|218537172|gb|ACK89570.1| ribosomal protein L11 methyltransferase [Bacillus cereus AH820]
 gi|225789933|gb|ACO30150.1| ribosomal protein L11 methyltransferase [Bacillus cereus 03BB102]
 gi|227007242|gb|ACP16985.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           CDC 684]
 gi|228596811|gb|EEK54470.1| Ribosomal protein L11 methyltransferase [Bacillus cereus BGSC 6E1]
 gi|228659565|gb|EEL15212.1| Ribosomal protein L11 methyltransferase [Bacillus cereus 95/8201]
 gi|228689976|gb|EEL43779.1| Ribosomal protein L11 methyltransferase [Bacillus cereus Rock3-42]
 gi|228811611|gb|EEM57947.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228823992|gb|EEM69810.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228830307|gb|EEM75920.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228842665|gb|EEM87752.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229268559|gb|ACQ50196.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           A0248]
 gi|298723947|gb|EFI64661.1| ribosomal protein L11 methyltransferase [Bacillus cereus SJ1]
 gi|300377973|gb|ADK06877.1| ribosomal protein L11 methyltransferase [Bacillus cereus biovar
           anthracis str. CI]
          Length = 312

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 56/173 (32%), Gaps = 26/173 (15%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-------------HPTQKPEALL 213
           ++             SD    + +  E   +   EK+             HPT     + 
Sbjct: 109 DWATAWKKYYHPVQISDTFTIVPTWEEYTPSSPEEKIIELDPGMAFGTGTHPTTT---MC 165

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATK--RIASVQP 270
            R L  + +PGD I+D   GSG     A KL  S +   ++    ++ A    R+     
Sbjct: 166 IRALEKTVQPGDTIIDVGTGSGVLSIAAAKLGASSVQAYDLDPVAVESAEMNVRLNKTDD 225

Query: 271 LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
           + ++    L      P      L+   L+    +L       +A V   G L 
Sbjct: 226 VVSVGQNSLLEGIEGPV----DLIVANLLAEIILLFPED---AARVVKSGGLF 271


>gi|324328216|gb|ADY23476.1| ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 312

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 56/173 (32%), Gaps = 26/173 (15%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-------------HPTQKPEALL 213
           ++             SD    + +  E   +   EK+             HPT     + 
Sbjct: 109 DWATAWKKYYHPVQISDTFTIVPTWEEYTPSSPEEKIIELDPGMAFGTGTHPTTT---MC 165

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATK--RIASVQP 270
            R L  + +PGD I+D   GSG     A KL  S +   ++    ++ A    R+     
Sbjct: 166 IRALEKTVQPGDTIIDVGTGSGVLSIAAAKLGASSVQAYDLDPVAVESAEMNVRLNKTDD 225

Query: 271 LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
           + ++    L      P      L+   L+    +L       +A V   G L 
Sbjct: 226 IVSVGQNSLLEGIEGPV----DLIVANLLAEIILLFPED---AARVVKSGGLF 271


>gi|189234369|ref|XP_974411.2| PREDICTED: similar to CG1074 CG1074-PA [Tribolium castaneum]
          Length = 464

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            +  K GDI+LDPF GSG+    A +     +G ++ 
Sbjct: 208 QAQVKDGDIVLDPFVGSGSLLVAAAEFGGFVLGGDID 244


>gi|167768602|ref|ZP_02440655.1| hypothetical protein CLOSS21_03161 [Clostridium sp. SS2/1]
 gi|167710126|gb|EDS20705.1| hypothetical protein CLOSS21_03161 [Clostridium sp. SS2/1]
 gi|291560555|emb|CBL39355.1| Putative RNA methylase family UPF0020 [butyrate-producing bacterium
           SSC/2]
          Length = 491

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 47/124 (37%), Gaps = 8/124 (6%)

Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
           ++  +  E L           Y F    ++  + D  +    L+ + +  +R  +   E 
Sbjct: 267 KKVASKLEELTAHKLRNSTSHYEFEIRMIEGKSGDYYL----LVKLNTIVDRRFSYREEF 322

Query: 203 LHPTQKPE--ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL--RRSFIGIEMKQDYI 258
           +  + KP   ALL  +      P   ILDPF G GT     +K+    +  GI+   + I
Sbjct: 323 IPTSIKPVNAALLVELAKDYMIPDAQILDPFCGVGTMLIERQKVVKGNTSYGIDHSPEAI 382

Query: 259 DIAT 262
             A 
Sbjct: 383 KKAI 386


>gi|294461167|gb|ADE76147.1| unknown [Picea sitchensis]
          Length = 258

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 211 ALLSRILVSSTKPGDII----LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            L  R L     P D I    LD   GSG SG    +    +IG+++    +DIA +R
Sbjct: 35  KLAERALELLALPDDGIPKLLLDIGCGSGLSGETISENGHHWIGLDISSSMLDIALER 92


>gi|291563379|emb|CBL42195.1| RNA methyltransferase, RsmD family [butyrate-producing bacterium
           SS3/4]
          Length = 186

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 18  EWKDKIIKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQL 57
           E K +++  +    + +L    KS D IF DPPY + L  ++
Sbjct: 90  EEKARVMSADVTEAVRRLDRDGKSFDFIFMDPPYRMDLPKKV 131


>gi|256826049|ref|YP_003150009.1| hypothetical protein Ksed_22640 [Kytococcus sedentarius DSM 20547]
 gi|256689442|gb|ACV07244.1| uncharacterized conserved protein [Kytococcus sedentarius DSM
           20547]
          Length = 695

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 4/105 (3%)

Query: 259 DIATKRIASVQPLGNIELTVLTGK--RTEPRVAFNLLVERGLIQPGQILTNAQGNI--SA 314
           +    ++ +  P        + G+  R     +   LV  GL+QPG  LT  + +   +A
Sbjct: 584 EHMLDQLLATWPAPEGHEPTVGGEVTREHNSASVRDLVAAGLLQPGTRLTFRRRSDLPAA 643

Query: 315 TVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELH 359
            V  +G L    +  +      + +    CNGW  W       LH
Sbjct: 644 VVTEEGKLHVNGQDHTAPSAAGRAASGRGCNGWWEWRLPDGRRLH 688


>gi|255070379|ref|XP_002507271.1| predicted protein [Micromonas sp. RCC299]
 gi|226522546|gb|ACO68529.1| predicted protein [Micromonas sp. RCC299]
          Length = 295

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 210 EALLSRILVSSTKPGD----IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           + L  R +     P D    ++LD   GSG SG    +L  S+IG+++ +  + +A  R
Sbjct: 33  DRLTERAVELLNFPKDDLPRLLLDVGCGSGLSGDRLTELGYSWIGMDISKSMLQVAQDR 91


>gi|88860170|ref|ZP_01134809.1| putative methyltransferase with S-adenosyl-L-methionine-dependent
           methyltransferase domain [Pseudoalteromonas tunicata D2]
 gi|88818164|gb|EAR27980.1| putative methyltransferase with S-adenosyl-L-methionine-dependent
           methyltransferase domain [Pseudoalteromonas tunicata D2]
          Length = 704

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 50/150 (33%), Gaps = 29/150 (19%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
           + + A+N  +N+ + ++    K + +  LE       DLIF DPP         +     
Sbjct: 580 QENFALNNLKNARYHFE----KADCLKWLEH-ATGQYDLIFLDPP--------TFSNSKR 626

Query: 64  LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
           + DA     D    F              + +L P GTL    +          L+ L  
Sbjct: 627 MEDAFDVQRDHIKLF-----------TWVKNILSPTGTLLFSNNKRGFKIDQEALEALGL 675

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
              N          P+F   R +N H + +
Sbjct: 676 KAKN---ITDQTLSPDF--NRNKNIHNSWL 700


>gi|260768455|ref|ZP_05877389.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio furnissii
           CIP 102972]
 gi|260616485|gb|EEX41670.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio furnissii
           CIP 102972]
          Length = 638

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 20/103 (19%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + + ++ + +  LEK      DLIF DPP         +     +  +     D      
Sbjct: 525 QHQYVQADCLQWLEK-ATGQYDLIFIDPP--------TFSNSKRMEQSFDVQRDHI---- 571

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                    +   +R+L+P GT+    +  +       ++ L 
Sbjct: 572 -------QLMTNLKRILRPEGTIVFSNNKRHFKMDMEQMEALG 607


>gi|188527821|ref|YP_001910508.1| cyclopropane fatty acid synthase (cfa) [Helicobacter pylori Shi470]
 gi|188144061|gb|ACD48478.1| cyclopropane fatty acid synthase (cfa) [Helicobacter pylori Shi470]
          Length = 389

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 51/307 (16%), Positives = 98/307 (31%), Gaps = 29/307 (9%)

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM----LQNLNFWILNDIVWRKSNPMPNF 140
            + W     +V+  + +++  G +   F +         ++   +   I     + + + 
Sbjct: 11  FKQWKNGDYQVVFWDDSVYRNGEHSPKFTLKIHRPLKFSDIKKDMSLTIAEAYMDGVIDI 70

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS---------DWLIPICSG 191
            G   +  H   +  +     K                  +           WL    S 
Sbjct: 71  EGSMDEVMHSLYLQTNYEHLHKHDNAKAIQKPIKESSNISKHYDLGNDFYSIWLDETLSY 130

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG-TSGAVAKKLRRSFIG 250
           S     KD + LH  Q  + L   +     KPG+ +LD   G G  S   A++     +G
Sbjct: 131 SCAYFKKDDDTLHAAQL-QKLDHTLKKLHLKPGEKLLDIGCGWGYLSIKAAQEYGAQVMG 189

Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV-AFNLLVERGLI-QPGQILTNA 308
           I +  +    A KR+  +     + + +L  +  + R+  F+ +V  G+    G+     
Sbjct: 190 ITISSEQYKQANKRVQELGLEDKVTIKLLNYQDLDGRLYRFDKVVSVGMFEHVGKDNLPF 249

Query: 309 QGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
                  V   G +        +H +     G    N W   Y    G L S   LR ++
Sbjct: 250 YFKKVKEVLKRGGMFL------LHSILCCFEGKT--NAWVDKYIFPGGYLPS---LREVM 298

Query: 369 RKELYNC 375
              +  C
Sbjct: 299 -SVMSEC 304


>gi|153005769|ref|YP_001380094.1| putative RNA methylase [Anaeromyxobacter sp. Fw109-5]
 gi|152029342|gb|ABS27110.1| putative RNA methylase [Anaeromyxobacter sp. Fw109-5]
          Length = 210

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 207 QKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKR 264
             PE +++ +L ++   P D++ D   G G     A K   R  IG+++  + I  A ++
Sbjct: 58  PTPERVVATMLDLAKVGPRDVVYDLGCGDGRIVVEAAKRGARKAIGVDIDPERIAEAREK 117

Query: 265 IASV 268
           + + 
Sbjct: 118 VRAA 121


>gi|297620085|ref|YP_003708190.1| putative RNA methylase [Methanococcus voltae A3]
 gi|297379062|gb|ADI37217.1| putative RNA methylase [Methanococcus voltae A3]
          Length = 420

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 213 LSRILVSST--KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           L+R +V+ +     D++ DPF G+G     A  +    IG ++  + ++     + + +
Sbjct: 261 LARCIVNLSRVNENDVLYDPFCGTGGFLIEAGLIGCKLIGSDIDYNMVNGTKLNLETYE 319


>gi|33520064|ref|NP_878896.1| putative methyltransferase [Candidatus Blochmannia floridanus]
 gi|33504410|emb|CAD83303.1| N6-adenine-specific methylase [Candidatus Blochmannia floridanus]
          Length = 196

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY 49
           +++   S+ E+  KII  +    L+     S D+IF DPP+
Sbjct: 92  LDQVIQSLHEYNVKIIHADCCQWLQY-SNDSYDIIFLDPPF 131


>gi|304437371|ref|ZP_07397330.1| ribosomal protein L11 methyltransferase [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304369627|gb|EFM23293.1| ribosomal protein L11 methyltransferase [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 317

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 36/106 (33%), Gaps = 9/106 (8%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKD-----GEKLHPTQKPEALLSRILVSSTK 222
           Y   +     + +R  W      G E + + D     G   H T    A+  R L     
Sbjct: 116 YIHTEKVGRRIVVRPTWEEYTPLGDEIVIDLDPGAAFGTGAHATT---AMCLRWLEHVVC 172

Query: 223 PGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIAS 267
           PG  + D   GSG     A KL     I ++     + +A + I  
Sbjct: 173 PGMRVYDVGCGSGILAIAASKLGAGEVIAMDYDPVAVSVAEENIKQ 218


>gi|221502623|gb|EEE28343.1| conserved hypothetical protein [Toxoplasma gondii VEG]
          Length = 657

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 205 PTQKPEAL-LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           PT     L       +  K G ++LDPF G+G+    A     + +G ++ 
Sbjct: 392 PTSLDVELAFLMCHQAQVKRGTLVLDPFVGTGSILISASYYGATCVGSDID 442



 Score = 36.5 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 6/71 (8%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA----YDAFTRA--WLLACR 93
           VD I  DPPY ++   +              + ++  ++ +    YD  T     L    
Sbjct: 545 VDAIVTDPPYGIRAGARQSGHQQKHKRGQERTNEERLTYISPTVLYDPQTVVSDLLNLAA 604

Query: 94  RVLKPNGTLWV 104
           R+L  +G L  
Sbjct: 605 RLLVDDGRLVF 615


>gi|237842387|ref|XP_002370491.1| hypothetical protein TGME49_077860 [Toxoplasma gondii ME49]
 gi|211968155|gb|EEB03351.1| hypothetical protein TGME49_077860 [Toxoplasma gondii ME49]
          Length = 657

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 205 PTQKPEAL-LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           PT     L       +  K G ++LDPF G+G+    A     + +G ++ 
Sbjct: 392 PTSLDVELAFLMCHQAQVKRGTLVLDPFVGTGSILISASYYGATCVGSDID 442



 Score = 36.5 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 6/71 (8%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA----YDAFTRA--WLLACR 93
           VD I  DPPY ++   +              + ++  ++ +    YD  T     L    
Sbjct: 545 VDAIVTDPPYGIRAGARQSGHQQKHKRGQERTNEERLTYISPTVLYDPQTVVSDLLNLAA 604

Query: 94  RVLKPNGTLWV 104
           R+L  +G L  
Sbjct: 605 RLLVDDGRLVF 615


>gi|254470599|ref|ZP_05084003.1| cyclopropane-fatty-acyl-phospholipid synthase [Pseudovibrio sp.
           JE062]
 gi|211960910|gb|EEA96106.1| cyclopropane-fatty-acyl-phospholipid synthase [Pseudovibrio sp.
           JE062]
          Length = 414

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 3/102 (2%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAK 242
           WL    + S   + +  E LH  Q+ +    R+L +++TKP   IL+   G G     A 
Sbjct: 160 WLDETMTYSSAYKLQQHEPLHEAQRRK--YDRVLQLTNTKPDQKILEIGCGWGGFAEHAC 217

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
           +  R+  GI + Q+ +  A  R+ S Q  GN    +   + T
Sbjct: 218 QSGRNVHGITLSQEQLKFAQSRLQSQQTNGNASFELRDYRET 259


>gi|54020632|ref|YP_116149.1| DNA adenine methylase [Mycoplasma hyopneumoniae 232]
 gi|53987805|gb|AAV28006.1| putative methylase [Mycoplasma hyopneumoniae 232]
          Length = 549

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 13/95 (13%)

Query: 11  ENQNSIFEWKDK----IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           +N N+I  + ++    I   N + +L        D +F DPPY+          D+S  +
Sbjct: 148 KNLNNISSFLNENSIEIYNKNYLEILSLAKEN--DFVFIDPPYD-------SENDNSFTN 198

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
              + W K  + E  +   +      + +   + T
Sbjct: 199 YDRNGWKKQDTLELINTLKKLNAKKVKWMFTNHST 233


>gi|258406276|ref|YP_003199018.1| ribosomal L11 methyltransferase [Desulfohalobium retbaense DSM
           5692]
 gi|257798503|gb|ACV69440.1| ribosomal L11 methyltransferase [Desulfohalobium retbaense DSM
           5692]
          Length = 296

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 10/104 (9%)

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR---IASVQPLGNIELTVLTGKRT 284
           LD   GSG  G    K     +G+++    + +A  R   + +  P  ++ +  L   R 
Sbjct: 159 LDLGTGSGILGIACAKCGLPGLGLDIDP--VAVANARENLLLNETPGLSVAVGSLNALRK 216

Query: 285 EPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTEL 328
                F L++   L +P   L +    + A +   G LI    L
Sbjct: 217 G--TTFGLIIANILARP---LQDMAAELIAHLRPGGRLILSGIL 255


>gi|148270786|ref|YP_001245246.1| ribosomal L11 methyltransferase [Thermotoga petrophila RKU-1]
 gi|281413091|ref|YP_003347170.1| ribosomal L11 methyltransferase [Thermotoga naphthophila RKU-10]
 gi|166223499|sp|A5IN97|PRMA_THEP1 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|147736330|gb|ABQ47670.1| LSU ribosomal protein L11P methyltransferase [Thermotoga petrophila
           RKU-1]
 gi|281374194|gb|ADA67756.1| ribosomal L11 methyltransferase [Thermotoga naphthophila RKU-10]
          Length = 264

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYI 258
           G  LHPT +   +    L    K G+ +LD   G+G     AKKL     + +++ +  +
Sbjct: 109 GTGLHPTTR---MSVFFLKKYLKEGNTVLDVGCGTGILAIAAKKLGASQVVAVDVDEQAV 165

Query: 259 DIATKRIAS 267
           ++A + +  
Sbjct: 166 EVAEENVRK 174


>gi|299068052|emb|CBJ39266.1| conserved protein of unknown function, methylase putative
           [Ralstonia solanacearum CMR15]
          Length = 215

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY 49
           I+ G+  + L +    + DL+F DPP+
Sbjct: 117 IVAGDVFAWLARQADGAFDLVFIDPPF 143


>gi|298246184|ref|ZP_06969990.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963]
 gi|297553665|gb|EFH87530.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963]
          Length = 283

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 26  GNSISVLEKLPAKSVDLIFADPP 48
           G++  V+      S D I  DPP
Sbjct: 190 GDAYEVVPTFDDNSFDRIVHDPP 212


>gi|300087265|ref|YP_003757787.1| methyltransferase type 11 [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299526998|gb|ADJ25466.1| Methyltransferase type 11 [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 222

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 4/49 (8%)

Query: 218 VSSTKPGDIILDPFFGSG-TSGAVAKKL--RRSFIGIEMKQDYIDIATK 263
           ++  KPGD +LD   G+G T+  +A++L   R   G+++  D + +A K
Sbjct: 50  LAGLKPGDQVLDICCGTGSTTQLIAERLDQGRV-TGVDLSPDMLAVARK 97


>gi|253579247|ref|ZP_04856517.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849345|gb|EES77305.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 645

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 6/74 (8%)

Query: 1   MSQKNSLAINENQNSIFE--WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
           + Q+   A+    N+IF+   ++K   G+++ V  K P    DL++ DPPY   L+   Y
Sbjct: 460 LEQQFLEAVESINNAIFDNGCENKSKHGDAMEVKIKHP----DLVYIDPPYYSPLSDNEY 515

Query: 59  RPDHSLVDAVTDSW 72
              +  V+ +   W
Sbjct: 516 VRRYHFVEGLARDW 529


>gi|260880996|ref|ZP_05893281.1| conserved hypothetical protein [Mitsuokella multacida DSM 20544]
 gi|260850142|gb|EEX70149.1| conserved hypothetical protein [Mitsuokella multacida DSM 20544]
          Length = 335

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 29/98 (29%), Gaps = 8/98 (8%)

Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILV--SSTKP 223
           +N D             D       G+  L     ++  P  K    +  +L        
Sbjct: 51  WNDDEEIDKEPKSMWVRDCHDASTYGTNLLSKFLPKRNFPFPKSLYAVEDVLKFYVGENK 110

Query: 224 GDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
             +I+D F GSGT+      L       R  I +   +
Sbjct: 111 DALIVDFFSGSGTTLHAVNLLNAEDGGHRRCIMVTNNE 148


>gi|17545108|ref|NP_518510.1| hypothetical protein RSc0389 [Ralstonia solanacearum GMI1000]
 gi|17427399|emb|CAD13917.1| conserved hypothetical protein 1177 [Ralstonia solanacearum
           GMI1000]
          Length = 215

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY 49
           I+ G+  + L +    + DL+F DPP+
Sbjct: 117 IVAGDVFAWLARQADGAFDLVFIDPPF 143


>gi|119718760|ref|YP_925725.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Nocardioides sp. JS614]
 gi|119539421|gb|ABL84038.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Nocardioides sp. JS614]
          Length = 188

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 5/90 (5%)

Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQ--KPEALLSRILVSSTKPGDIILDPFFGSG-TS 237
             +W +P+        +   E  H     +P  + + + +   +PGD +LD   GSG T+
Sbjct: 14  PREWFLPVSERDRASYDGPIEIGHGQTNSQPRTVAAMLRLLEVRPGDRVLDVGSGSGWTT 73

Query: 238 GAVAKKLR--RSFIGIEMKQDYIDIATKRI 265
           G +A+        +G+E++ + +      +
Sbjct: 74  GLLAELTGSAGRVLGLELEPELVAFGRANL 103


>gi|270001932|gb|EEZ98379.1| hypothetical protein TcasGA2_TC000838 [Tribolium castaneum]
          Length = 359

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            +  K GDI+LDPF GSG+    A +     +G ++ 
Sbjct: 103 QAQVKDGDIVLDPFVGSGSLLVAAAEFGGFVLGGDID 139


>gi|229174987|ref|ZP_04302506.1| Ribosomal protein L11 methyltransferase [Bacillus cereus MM3]
 gi|228608448|gb|EEK65751.1| Ribosomal protein L11 methyltransferase [Bacillus cereus MM3]
          Length = 312

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 55/173 (31%), Gaps = 26/173 (15%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-------------HPTQKPEALL 213
           ++             SD    + +  E       EK+             HPT     + 
Sbjct: 109 DWATAWKKYYHPVQISDTFTIVPTWEEYTPASPEEKIIELDPGMAFGTGTHPTTT---MC 165

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATK--RIASVQP 270
            R L  + +PGD ++D   GSG     A KL  S +   ++    ++ A    R+     
Sbjct: 166 IRALEKTVQPGDTVIDVGTGSGVLSIAAAKLGASSVQAYDLDPVAVESAEMNVRLNKTDD 225

Query: 271 LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
           + ++    L      P      L+   L+    +L       +A V   G L 
Sbjct: 226 IVSVGQNSLLEGIEGPV----DLIVANLLAEIILLFPED---AARVVKSGGLF 271


>gi|229195512|ref|ZP_04322280.1| O-antigen biosynthesis protein [Bacillus cereus m1293]
 gi|228588052|gb|EEK46102.1| O-antigen biosynthesis protein [Bacillus cereus m1293]
          Length = 210

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 19/139 (13%)

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           +L    K    +LD    SG  GA  K+      GIE   +  + A +++  V  LG+IE
Sbjct: 5   LLKHIKKEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKLDHVV-LGDIE 63

Query: 276 LTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNA---QGNISATVCADGTLISGTELGSI 331
              +  +  +   V F  ++E         L +       +   +  +G +++     SI
Sbjct: 64  TMDMPYEEEQFDCVIFGDVLEH--------LFDPWAVIEKVKPYIKENGVILA-----SI 110

Query: 332 HRVGAKVSGSETCNG-WNF 349
             V      +    G W +
Sbjct: 111 PNVAHISVLAPLLAGNWTY 129


>gi|294507034|ref|YP_003571092.1| conserved hypothetical protein, secreted [Salinibacter ruber M8]
 gi|294343362|emb|CBH24140.1| conserved hypothetical protein, secreted [Salinibacter ruber M8]
          Length = 206

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 8/63 (12%)

Query: 205 PTQKPEALLSRIL-VSSTKPGDIILDPFFGSG---TSGAVAKKLRRSFIGIEMKQDYIDI 260
           PT KP  ++ R+L ++     D++ D   GSG        A+      +GIE+  D +  
Sbjct: 55  PTPKP--VVDRMLELADVDETDVLYD--LGSGDGRIVIRAARTHGARGVGIEIDPDLVKK 110

Query: 261 ATK 263
           A K
Sbjct: 111 ARK 113


>gi|239944288|ref|ZP_04696225.1| putative methyltransferase [Streptomyces roseosporus NRRL 15998]
 gi|239990743|ref|ZP_04711407.1| putative methyltransferase [Streptomyces roseosporus NRRL 11379]
 gi|291447756|ref|ZP_06587146.1| methyltransferase [Streptomyces roseosporus NRRL 15998]
 gi|291350703|gb|EFE77607.1| methyltransferase [Streptomyces roseosporus NRRL 15998]
          Length = 281

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 19/110 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY-------NLQLNGQLYRPDHSLVDAVTDSWDK 74
            + KG+++S L +L    VDL+ ++PPY        +    + + P+ +L     D  D 
Sbjct: 161 TVHKGDALSALPEL-DGQVDLVISNPPYIPLTEWEYVAPEARDHDPEMALFSG-EDGLDT 218

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
               E              R+L+P G + +  +     ++  +      W
Sbjct: 219 IRGIE----------RTAHRLLRPGGLVVIEHADTQGGQVPWIFTEERGW 258


>gi|228923065|ref|ZP_04086357.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228836563|gb|EEM81912.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 312

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 56/173 (32%), Gaps = 26/173 (15%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-------------HPTQKPEALL 213
           ++             SD    + +  E   +   EK+             HPT     + 
Sbjct: 109 DWATAWKKYYHPVQISDTFTIVPTWEEYTPSSPDEKIIELDPGMAFGTGTHPTTT---MC 165

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATK--RIASVQP 270
            R L  + +PGD I+D   GSG     A KL  S +   ++    ++ A    R+     
Sbjct: 166 IRALEKTVQPGDTIIDVGTGSGVLSIAAAKLGASSVQAYDLDPVAVESAEMNVRLNKTDD 225

Query: 271 LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
           + ++    L      P      L+   L+    +L       +A V   G L 
Sbjct: 226 IVSVGQNSLLEGIEGPV----DLIVANLLAEIILLFPED---AARVVKSGGLF 271


>gi|228954598|ref|ZP_04116622.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228805044|gb|EEM51639.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 312

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 56/173 (32%), Gaps = 26/173 (15%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-------------HPTQKPEALL 213
           ++             SD    + +  E   +   EK+             HPT     + 
Sbjct: 109 DWATAWKKYYHPVQISDTFTIVPTWEEYTPSSPDEKIIELDPGMAFGTGTHPTTT---MC 165

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATK--RIASVQP 270
            R L  + +PGD I+D   GSG     A KL  S +   ++    ++ A    R+     
Sbjct: 166 IRALEKTVQPGDTIIDVGTGSGVLSIAAAKLGASSVQAYDLDPVAVESAEMNVRLNKTDD 225

Query: 271 LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
           + ++    L      P      L+   L+    +L       +A V   G L 
Sbjct: 226 IVSVGQNSLLEGIEGPV----DLIVANLLAEIILLFPED---AARVVKSGGLF 271


>gi|229103946|ref|ZP_04234624.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus
           Rock3-28]
 gi|228679514|gb|EEL33713.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus
           Rock3-28]
          Length = 260

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 58/145 (40%), Gaps = 10/145 (6%)

Query: 222 KPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
           + GD +LD   G G    A AK+     +G+ + ++     ++RI   + L ++    L 
Sbjct: 33  QKGDTLLDIGCGWGELITAAAKQYGVKAMGVTLSEEQYAKTSERIKK-EGLTDLVEVSLL 91

Query: 281 GKRTEPRVAFNLLVERGLI-QPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVS 339
             R      F+ +V  G+I   G+            +  DG +        +H + +  +
Sbjct: 92  DYRDIKNRKFDKIVSVGMIEHVGKDNITQYFETVNELLNDGGISL------LHCITSPAN 145

Query: 340 GSETCNGWNFWYFEKLGELHSINTL 364
           G  T NGW   Y    G + ++N L
Sbjct: 146 GGAT-NGWIEKYIFPGGYVPAVNEL 169


>gi|228910149|ref|ZP_04073968.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis IBL
           200]
 gi|228941479|ref|ZP_04104029.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228974409|ref|ZP_04134977.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981004|ref|ZP_04141306.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           Bt407]
 gi|229071817|ref|ZP_04205031.1| Ribosomal protein L11 methyltransferase [Bacillus cereus F65185]
 gi|229081574|ref|ZP_04214071.1| Ribosomal protein L11 methyltransferase [Bacillus cereus Rock4-2]
 gi|229180589|ref|ZP_04307931.1| Ribosomal protein L11 methyltransferase [Bacillus cereus 172560W]
 gi|228603013|gb|EEK60492.1| Ribosomal protein L11 methyltransferase [Bacillus cereus 172560W]
 gi|228701730|gb|EEL54219.1| Ribosomal protein L11 methyltransferase [Bacillus cereus Rock4-2]
 gi|228711296|gb|EEL63257.1| Ribosomal protein L11 methyltransferase [Bacillus cereus F65185]
 gi|228778664|gb|EEM26929.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           Bt407]
 gi|228785245|gb|EEM33256.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818129|gb|EEM64204.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228849432|gb|EEM94267.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis IBL
           200]
 gi|326942095|gb|AEA17991.1| ribosomal protein L11 [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 312

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 56/173 (32%), Gaps = 26/173 (15%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-------------HPTQKPEALL 213
           ++             SD    + +  E   +   EK+             HPT     + 
Sbjct: 109 DWATAWKKYYHPVQISDTFTIVPTWEEYTPSSPDEKIIELDPGMAFGTGTHPTTT---MC 165

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATK--RIASVQP 270
            R L  + +PGD I+D   GSG     A KL  S +   ++    ++ A    R+     
Sbjct: 166 IRALEKTVQPGDTIIDVGTGSGVLSIAAAKLGASSVQAYDLDPVAVESAEMNVRLNKTDD 225

Query: 271 LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
           + ++    L      P      L+   L+    +L       +A V   G L 
Sbjct: 226 IVSVGQNSLLEGIEGPV----DLIVANLLAEIILLFPED---AARVVKSGGLF 271


>gi|147677215|ref|YP_001211430.1| ribosomal protein L11 methyltransferase [Pelotomaculum
           thermopropionicum SI]
 gi|189037699|sp|A5D3Y3|PRMA_PELTS RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|146273312|dbj|BAF59061.1| ribosomal protein L11 methylase [Pelotomaculum thermopropionicum
           SI]
          Length = 308

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIA 261
           L  R+L    +PG  + D   GSG     A +L     + +++      +A
Sbjct: 159 LCLRLLEKYVRPGGTVYDVGTGSGVLAVAAARLGAGRVVAVDIDPLACRVA 209


>gi|83816149|ref|YP_445152.1| RNA methylase family protein [Salinibacter ruber DSM 13855]
 gi|83757543|gb|ABC45656.1| Putative RNA methylase family UPF0020 [Salinibacter ruber DSM
           13855]
          Length = 156

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 8/63 (12%)

Query: 205 PTQKPEALLSRIL-VSSTKPGDIILDPFFGSG---TSGAVAKKLRRSFIGIEMKQDYIDI 260
           PT KP  ++ R+L ++     D++ D   GSG        A+      +GIE+  D +  
Sbjct: 5   PTPKP--VVDRMLELADVDETDVLYD--LGSGDGRIVIRAARTHGARGVGIEIDPDLVKK 60

Query: 261 ATK 263
           A K
Sbjct: 61  ARK 63


>gi|256810964|ref|YP_003128333.1| protein of unknown function Met10 [Methanocaldococcus fervens AG86]
 gi|256794164|gb|ACV24833.1| protein of unknown function Met10 [Methanocaldococcus fervens AG86]
          Length = 266

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 20/120 (16%)

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA--- 266
            A+    + S     DI+ D   GSG    +A +  +    IE+     D A + +    
Sbjct: 21  LAIFKNAIESVVDKDDIVFDLGTGSGILAMIAARKAKKVYAIELDPFTYDYAKENVKING 80

Query: 267 --SVQPLGNIELTVLTGKR--------------TEPRVA-FNLLVERGLIQPGQILTNAQ 309
             +++ +          ++              TEP+V   N +++RG ++    +  A+
Sbjct: 81  FDNIEVIEGDASEYNFKEKADVVIAELLDTALITEPQVKVINSIIKRGFLKENARIIPAK 140


>gi|254417214|ref|ZP_05030959.1| putative methyltransferase [Microcoleus chthonoplastes PCC 7420]
 gi|196176020|gb|EDX71039.1| putative methyltransferase [Microcoleus chthonoplastes PCC 7420]
          Length = 210

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
           ++I+G+ +  L+ L  +  D I+ DPPY   L
Sbjct: 91  QVIRGDVVGRLKTLADQQFDRIYFDPPYASDL 122


>gi|307690205|ref|ZP_07632651.1| hypothetical protein Ccel74_18751 [Clostridium cellulovorans 743B]
          Length = 755

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 4/77 (5%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIK-GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR 59
           M+ K SL+ + ++N  +   + I + G+    ++       DLI  DPPY    +  +  
Sbjct: 601 MTNKYSLSTHISENYNY---NPIFQVGDCRKCIDSYSNMKYDLIITDPPYGFNTDEDIIY 657

Query: 60  PDHSLVDAVTDSWDKFS 76
             +   D +    +K +
Sbjct: 658 MSNLYKDIIKRMIEKLN 674



 Score = 37.3 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 55/158 (34%), Gaps = 13/158 (8%)

Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
           RI  +L+++          +   P     G   +  H   +    +P+            
Sbjct: 267 RITEVLEDIEKDEQFKKTIKVGTPYNGVDGD-VKQEHCIWMCMDCTPEYNINQSTNIVDT 325

Query: 173 AANEDVQMRSDWLIPICSGSERLR---NKDGEKLHPTQKPEALLSRIL-------VSSTK 222
                 +    +   IC+ +E      N  G   + T  P  L++ ++       ++++ 
Sbjct: 326 PVKSKNKYLICYDQFICNKNEYYIFNENMPGWYDNVTI-PHTLMAAMINLTGINRLNNSN 384

Query: 223 PGDIILDPFFGSGTS-GAVAKKLRRSFIGIEMKQDYID 259
               ILDPF G+GTS    AK    +F G +     ID
Sbjct: 385 RKINILDPFVGAGTSYFQAAKFQNINFTGFDKNSTAID 422


>gi|291521671|emb|CBK79964.1| 23S rRNA m(5)U-1939 methyltransferase [Coprococcus catus GD/7]
          Length = 458

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 8/90 (8%)

Query: 223 PGDIILDPFFGSGT-SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
           P D+I D + G GT S  +AKK +    G+E+    ID A KR A++  + N E  V   
Sbjct: 308 PNDVIWDLYCGIGTISLFMAKKAK-QVYGVEIVPQAIDDA-KRNAAINDIHNAEFYVGKA 365

Query: 282 KRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
           +   P+       ER  I    I+ +    
Sbjct: 366 EEVLPQT-----YEREHIHADIIVVDPPRK 390


>gi|302561467|ref|ZP_07313809.1| ubiquinone/menaquinone biosynthesis methyltransferase [Streptomyces
           griseoflavus Tu4000]
 gi|302479085|gb|EFL42178.1| ubiquinone/menaquinone biosynthesis methyltransferase [Streptomyces
           griseoflavus Tu4000]
          Length = 206

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/117 (14%), Positives = 46/117 (39%), Gaps = 17/117 (14%)

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA---SVQP 270
            R+     +    +LD   G+G+   +A        G++     + +A +++A   +V  
Sbjct: 42  ERLRDWLPERAGDVLDLGCGTGSLALLAAGQGHRVTGVDRSPAMVALAREKLAGRDAVFL 101

Query: 271 LGNIELTVLTGKRTEPRVAFNLLVERGLI----QPGQILTNAQGNISATVCADGTLI 323
           +G+     +  +R      ++ ++ R ++    +P + L     +    +   G L+
Sbjct: 102 VGDAAAPPVGEER------YDTVLVRHVLWTLPEPDRAL----RHWRDLLRPGGRLV 148


>gi|229028985|ref|ZP_04185084.1| O-antigen biosynthesis protein [Bacillus cereus AH1271]
 gi|228732265|gb|EEL83148.1| O-antigen biosynthesis protein [Bacillus cereus AH1271]
          Length = 232

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 51/139 (36%), Gaps = 19/139 (13%)

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           +L    K    +LD    SG  GA  K+      GIE   +  + A  ++  +  LG+IE
Sbjct: 27  LLKHIKKEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEKAKDKLDHIV-LGDIE 85

Query: 276 LTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNA---QGNISATVCADGTLISGTELGSI 331
              +  ++ +   V F  ++E         L +       +   +  +G +++     SI
Sbjct: 86  TMDMPYEKEQFDCVIFGDVLEH--------LFDPWAVIEKVKPYIKENGVILA-----SI 132

Query: 332 HRVGAKVSGSETCNG-WNF 349
             V      +    G W +
Sbjct: 133 PNVAHISVLAPLLAGNWTY 151


>gi|225568736|ref|ZP_03777761.1| hypothetical protein CLOHYLEM_04815 [Clostridium hylemonae DSM
           15053]
 gi|225162235|gb|EEG74854.1| hypothetical protein CLOHYLEM_04815 [Clostridium hylemonae DSM
           15053]
          Length = 322

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 16/121 (13%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G  +H T     L  R L     P   ILD   GSG  G +A K   R  +G ++    I
Sbjct: 154 GTGMHETT---QLCIRQLRKYVGPDTEILDVGCGSGILGMLALKFGARYAVGTDLDPCAI 210

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           D   +         N+E   ++ ++ E  V    +++   +Q      +    ++A + A
Sbjct: 211 DATHE---------NMEANGISREQYE--VMIGNIIDDREVQDKAG-YDRYDIVAANILA 258

Query: 319 D 319
           D
Sbjct: 259 D 259


>gi|51246577|ref|YP_066461.1| HemK methylase [Desulfotalea psychrophila LSv54]
 gi|50877614|emb|CAG37454.1| related to HemK methylase [Desulfotalea psychrophila LSv54]
          Length = 291

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 227 ILDPFFGSGTSGAV-AKKLRRSFIGIEMKQDYIDIAT 262
           +LD   GSG    V AK+L R  + +++ ++ + +A 
Sbjct: 118 VLDLCTGSGVIAVVLAKELGRPVVAVDISEEALQVAR 154


>gi|294507181|ref|YP_003571239.1| RNA methylase family protein [Salinibacter ruber M8]
 gi|294343509|emb|CBH24287.1| RNA methylase family protein [Salinibacter ruber M8]
          Length = 223

 Score = 38.8 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTS-GAVAKKLRRSFIGIEMKQDYIDIATK 263
           P +  E +L    ++     D + D   G G    A AK+     +GIE+K D +  A K
Sbjct: 74  PEKTVEGMLE---LAGVTESDTVYDLGSGDGRVPIAAAKQHGARGVGIEIKPDLVQRARK 130

Query: 264 R 264
           R
Sbjct: 131 R 131


>gi|226363544|ref|YP_002781326.1| cyclopropane fatty acid synthase [Rhodococcus opacus B4]
 gi|226242033|dbj|BAH52381.1| putative cyclopropane fatty acid synthase [Rhodococcus opacus B4]
          Length = 433

 Score = 38.8 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 85/249 (34%), Gaps = 26/249 (10%)

Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
           +  + ++L + +L  I       +P     R++   E L  +        +     +   
Sbjct: 109 LAAITRSLGWDLLRPIAPPPQEHLP-----RWRRVAEGLRHSKSRDAEVIHHHYDVSNTF 163

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL--VSSTKPGDIILDPF 231
               +     +       +E+   +  E  +          R++      +PGD +LD  
Sbjct: 164 YEYVLGPSMTYTCACYENAEQTLEEAQENKY----------RLVFEKLGLQPGDRLLDIG 213

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFN 291
            G G+    A +     IG+ + ++  + A K IA  + L ++     +  R  P   F+
Sbjct: 214 CGWGSMVRFAARRGVKVIGVTLSREQAEWAQKAIAE-EGLSDLAEVRFSDYRDVPETGFD 272

Query: 292 LLVERGLI-QPGQILTNAQ-GNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNF 349
            +   GL    G     +  G + + +   G L++       ++  A+        G+  
Sbjct: 273 AISSIGLTEHIGVGNYPSYFGLLQSKLREGGRLLNHCITRPDNQSQARAG------GFID 326

Query: 350 WYFEKLGEL 358
            Y    GEL
Sbjct: 327 RYVFPDGEL 335


>gi|163813860|ref|ZP_02205254.1| hypothetical protein COPEUT_00013 [Coprococcus eutactus ATCC 27759]
 gi|158450730|gb|EDP27725.1| hypothetical protein COPEUT_00013 [Coprococcus eutactus ATCC 27759]
          Length = 639

 Score = 38.8 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 6/74 (8%)

Query: 1   MSQKNSLAINENQNSIFE--WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
           + Q+   A+    N+IF+   ++K   G+++ V  K P    DL++ DPPY   L+   Y
Sbjct: 460 LEQQFLEAVESINNAIFDNGCENKSKHGDAMEVKIKHP----DLVYIDPPYYSPLSDNEY 515

Query: 59  RPDHSLVDAVTDSW 72
              +  V+ +   W
Sbjct: 516 VRRYHFVEGLARDW 529


>gi|257076179|ref|ZP_05570540.1| methyltransferase [Ferroplasma acidarmanus fer1]
          Length = 323

 Score = 38.8 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 19/36 (52%)

Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           S T  GD +LDPF G+G     A  L R  IG + +
Sbjct: 170 SGTAEGDTLLDPFCGTGGILIEASMLGRKIIGNDSE 205


>gi|152976742|ref|YP_001376259.1| ribosomal protein L11 methyltransferase [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|189037690|sp|A7GT06|PRMA_BACCN RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|152025494|gb|ABS23264.1| ribosomal protein L11 methyltransferase [Bacillus cytotoxicus NVH
           391-98]
          Length = 312

 Score = 38.8 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 17/110 (15%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-------------HPTQKPEALL 213
           ++             SD    + +  E   +   EK+             HPT     + 
Sbjct: 109 DWATAWKKYYHPVQISDTFTIVPTWEEYTPSSPDEKIIELDPGMAFGTGTHPTTT---MC 165

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIAT 262
            R L  + KPGD ++D   GSG     A KL  + +   ++    ++ A 
Sbjct: 166 IRALEKTVKPGDTVIDVGTGSGVLSIAAAKLGAASVQAYDLDPVAVESAE 215


>gi|156095713|ref|XP_001613891.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148802765|gb|EDL44164.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 576

 Score = 38.8 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 66/190 (34%), Gaps = 26/190 (13%)

Query: 39  SVDLIFADPP---------YNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
             D+I  DPP         YNL L   ++  ++ L   + +  DKF S E   +      
Sbjct: 320 KFDVILIDPPWKEYYDRKIYNLDLLSSMHIENYDLNGDINNDRDKFWSLEDLASL----- 374

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF---Q 146
               ++      L++     ++     +L    +    DI W K+N     +  ++    
Sbjct: 375 -EIEKIADVPSFLFLWCGITHLEDARVLLNKWGYRRCEDICWLKTNIKETNKKVKYLNET 433

Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
           N   + +  +      G      A++ + +   + ++    +      +  +  E ++  
Sbjct: 434 NNENSFLQRTTEHCLVGIK---GAVRRSYDIHFIHANLDTDVI-----IAEETDENIYNN 485

Query: 207 QKPEALLSRI 216
            KPE L   I
Sbjct: 486 NKPEELYKII 495


>gi|83815986|ref|YP_445306.1| hypothetical protein SRU_1181 [Salinibacter ruber DSM 13855]
 gi|83757380|gb|ABC45493.1| conserved hypothetical protein [Salinibacter ruber DSM 13855]
          Length = 223

 Score = 38.8 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTS-GAVAKKLRRSFIGIEMKQDYIDIATK 263
           P +  E +L    ++     D + D   G G    A AK+     +GIE+K D +  A K
Sbjct: 74  PEKTVEGMLE---LAGVTESDTVYDLGSGDGRVPIAAAKQHGARGVGIEIKPDLVQRARK 130

Query: 264 R 264
           R
Sbjct: 131 R 131


>gi|296136809|ref|YP_003644051.1| ribosomal protein L11 methyltransferase [Thiomonas intermedia K12]
 gi|295796931|gb|ADG31721.1| ribosomal protein L11 methyltransferase [Thiomonas intermedia K12]
          Length = 298

 Score = 38.8 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 12/130 (9%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L    L   T     +LD   GSG     A K      +G+++  D +
Sbjct: 145 GTGTHPTTR---LCLEWLARQTPSQLSVLDYGCGSGILAIAAAKFGAGPVVGVDIDPDAV 201

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
            +AT+  A+         T L  K       F+++V   L  P ++L  A   I+A V  
Sbjct: 202 -LATE--ANAAANDVSVQTGLPDKVA--DAQFDIVVANILSAPLKLLAPA---IAAHVKP 253

Query: 319 DGTLISGTEL 328
            G L+    L
Sbjct: 254 GGWLVLSGIL 263


>gi|218682064|ref|ZP_03529665.1| hypothetical protein RetlC8_24510 [Rhizobium etli CIAT 894]
          Length = 199

 Score = 38.8 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 43/128 (33%), Gaps = 17/128 (13%)

Query: 210 EALLSRILVSSTKPGDI-ILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIAS 267
           + L   IL +        +LD   GSG  G  A           ++   + + A  R+ +
Sbjct: 43  QGLARYILDNVEMVRGKRVLDFASGSGLVGIAAVMAGALEVTACDIDP-WAEAAV-RLNA 100

Query: 268 VQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN-----ISATVCADGTL 322
                N      TG     R      V+  ++  G +  ++          AT+ ADG L
Sbjct: 101 ---QVNHVSLGFTGADLIGRA-----VDADIVLAGDVFYDSAFAAALVPWLATLAADGKL 152

Query: 323 ISGTELGS 330
           +   + G 
Sbjct: 153 VLVGDPGR 160


>gi|168215654|ref|ZP_02641279.1| ribosomal protein L11 methyltransferase [Clostridium perfringens
           NCTC 8239]
 gi|182382073|gb|EDT79552.1| ribosomal protein L11 methyltransferase [Clostridium perfringens
           NCTC 8239]
          Length = 313

 Score = 38.8 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 3/103 (2%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSSTKPG 224
            Y       E + ++  W     +G E +   D      T   E   +  + L    K  
Sbjct: 119 KYYKPIKIGEKIVIKPIWEEYEPTGEEMVVELDPGMAFGTGDHETTRMCVQALDKYVKAD 178

Query: 225 DIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIA 266
             + D   GSG    VA KL  +  IG+++    +D A + I+
Sbjct: 179 TTVFDIGTGSGILALVASKLGAKHVIGVDLDPVAVDSAKENIS 221


>gi|320161884|ref|YP_004175109.1| putative cyclopropane-fatty-acyl-phospholipid synthase [Anaerolinea
           thermophila UNI-1]
 gi|319995738|dbj|BAJ64509.1| putative cyclopropane-fatty-acyl-phospholipid synthase [Anaerolinea
           thermophila UNI-1]
          Length = 434

 Score = 38.8 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 55/153 (35%), Gaps = 18/153 (11%)

Query: 222 KPGDIILDP-FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
           KPG  +LD      G     A++      GI + +    +A +RIA      +  + V  
Sbjct: 199 KPGQKLLDLGCGWGGLVIYAAERYGVDVTGITLSEPQASLAQQRIAEAGLQAHARVRVQD 258

Query: 281 GKRTEPRVAFNLLVERGLI-QPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVS 339
            +  E    ++ LV  G+    G+ L       +  +   G +         H +  + +
Sbjct: 259 YREVEEWEQYDALVSVGMFEHVGEKLLPVYFERAYRLLKPGGVFLN------HGIARRAA 312

Query: 340 GSETCNGWN---F--WYFEKLGELHSIN-TLRI 366
                 GW+   F   Y    GEL  I+ TLR 
Sbjct: 313 EK----GWDPQSFSNAYVFPDGELVPISTTLRA 341


>gi|238927384|ref|ZP_04659144.1| ribosomal protein L11 methyltransferase [Selenomonas flueggei ATCC
           43531]
 gi|238884666|gb|EEQ48304.1| ribosomal protein L11 methyltransferase [Selenomonas flueggei ATCC
           43531]
          Length = 322

 Score = 38.8 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 35/106 (33%), Gaps = 9/106 (8%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKD-----GEKLHPTQKPEALLSRILVSSTK 222
           Y   +     + +R  W     SG E + + D     G   H T    A+  R L     
Sbjct: 121 YIHTEKIGRRIVVRPTWEEYTPSGDEIVIDLDPGAAFGTGAHATT---AMCLRWLERLVC 177

Query: 223 PGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIAS 267
               + D   GSG     A KL     I ++     + +A + I  
Sbjct: 178 SRMRVCDVGCGSGILAIAASKLGAGEVIAMDYDPVAVSVAEENIKQ 223


>gi|302521936|ref|ZP_07274278.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptomyces sp. SPB78]
 gi|318060717|ref|ZP_07979440.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Streptomyces sp. SA3_actG]
 gi|318075508|ref|ZP_07982840.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Streptomyces sp. SA3_actF]
 gi|333024404|ref|ZP_08452468.1| putative methyltransferase [Streptomyces sp. Tu6071]
 gi|302430831|gb|EFL02647.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptomyces sp. SPB78]
 gi|332744256|gb|EGJ74697.1| putative methyltransferase [Streptomyces sp. Tu6071]
          Length = 281

 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 19/109 (17%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY-------NLQLNGQLYRPDHSLVDAVTDSWDKF 75
           +  G++ + L +L    VDL+ ++PPY        +    + + P+ +L     D  D  
Sbjct: 162 LHHGDAFAALPEL-DGQVDLVISNPPYIPLTEWEYVAPEARDHDPEMALFSG-EDGLDTI 219

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
              E              R+L+P G + V  +     ++  +      W
Sbjct: 220 RRIE----------RTAHRLLRPGGVVVVEHADTQGGQVPWLFTEERGW 258


>gi|210617097|ref|ZP_03291407.1| hypothetical protein CLONEX_03629 [Clostridium nexile DSM 1787]
 gi|210149486|gb|EEA80495.1| hypothetical protein CLONEX_03629 [Clostridium nexile DSM 1787]
          Length = 246

 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 14/138 (10%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
            +   +A     ++  E K  I+ G+     E     S D+I  +PPY +  +G     D
Sbjct: 79  EESADMARRSVAHNHLEEKVDIVTGDIKEAAELFGPASFDVITTNPPYMIGHHGIENPSD 138

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
              +           +           L    R+LKP G  +++   H  FR+  +L  +
Sbjct: 139 AKAI-----------ARHEVLCDLNDILRESARILKPRGRFYMV---HRPFRLAEILSKM 184

Query: 122 NFWILNDIVWRKSNPMPN 139
               +     R  +P  +
Sbjct: 185 IQVGIEPKRMRMVHPFVH 202


>gi|217967528|ref|YP_002353034.1| methyltransferase [Dictyoglomus turgidum DSM 6724]
 gi|217336627|gb|ACK42420.1| methyltransferase [Dictyoglomus turgidum DSM 6724]
          Length = 185

 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 19/35 (54%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN 54
           K K+I  +    L K P +  D+IFADPPY L   
Sbjct: 96  KTKVIYKDVFEFLNKTPEEKYDIIFADPPYELSEK 130


>gi|326435156|gb|EGD80726.1| hypothetical protein PTSG_01316 [Salpingoeca sp. ATCC 50818]
          Length = 472

 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 24/131 (18%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           + KG++   +  L + S+D I  D P+                 +  D+ D +       
Sbjct: 259 LFKGDAR--MLPLESASIDRIVCDLPFG------------KKFGSAKDNRDLYP------ 298

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
               A L  C RVL+P+G   ++ S   +  + T +      I     ++  N       
Sbjct: 299 ----AVLRECTRVLRPSGRAVLLTSKKQLTTLLTAVHGQELHICRQQRFKLGNTESTAVV 354

Query: 143 RRFQNAHETLI 153
            R + A + +I
Sbjct: 355 VRHRRAGDPVI 365


>gi|168003339|ref|XP_001754370.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694472|gb|EDQ80820.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 376

 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 62/217 (28%), Gaps = 28/217 (12%)

Query: 51  LQLNGQLYRPDHSLVDAVTDSWDKF--SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
           ++   +             D  D+   SS   YD F +  +    +V++  G L      
Sbjct: 21  IKYVAKTTSSIIRAQSQDDDYNDEVATSSDPLYDFFMQEEIRTYIKVMENRGGLRNFMGV 80

Query: 109 H------------NIFRIGTMLQ-------NLNFWILNDIVWRKSNPMPNFRGR------ 143
           +            N   +   +          ++ I   ++ R   P+P  R R      
Sbjct: 81  NSTYGAIGHACVTNKPLLEKYMDYKVGGDCRDDWLIAQQLIIRGCEPLPRRRCRARGPQM 140

Query: 144 -RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
            R +      +W  P+     +   Y        D + R  +             K    
Sbjct: 141 LRARRPTNVSLWTIPADDDFRWDSYYCKNFTCLADYKHRKKFFKCNPCFDLLGHEKQRWV 200

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
           +  T   E L+  +L        I LD   G+GT  A
Sbjct: 201 VPNTTDAEFLIEDVLTIKPGELRIGLDYSMGTGTFAA 237


>gi|302875155|ref|YP_003843788.1| hypothetical protein Clocel_2298 [Clostridium cellulovorans 743B]
 gi|23451702|gb|AAN32824.1|AF435978_1 hypothetical protein [Clostridium cellulovorans]
 gi|302578012|gb|ADL52024.1| hypothetical protein Clocel_2298 [Clostridium cellulovorans 743B]
          Length = 757

 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 4/77 (5%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIK-GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR 59
           M+ K SL+ + ++N  +   + I + G+    ++       DLI  DPPY    +  +  
Sbjct: 603 MTNKYSLSTHISENYNY---NPIFQVGDCRKCIDSYSNMKYDLIITDPPYGFNTDEDIIY 659

Query: 60  PDHSLVDAVTDSWDKFS 76
             +   D +    +K +
Sbjct: 660 MSNLYKDIIKRMIEKLN 676



 Score = 37.3 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 55/158 (34%), Gaps = 13/158 (8%)

Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
           RI  +L+++          +   P     G   +  H   +    +P+            
Sbjct: 269 RITEVLEDIEKDEQFKKTIKVGTPYNGVDGD-VKQEHCIWMCMDCTPEYNINQSTNIVDT 327

Query: 173 AANEDVQMRSDWLIPICSGSERLR---NKDGEKLHPTQKPEALLSRIL-------VSSTK 222
                 +    +   IC+ +E      N  G   + T  P  L++ ++       ++++ 
Sbjct: 328 PVKSKNKYLICYDQFICNKNEYYIFNENMPGWYDNVTI-PHTLMAAMINLTGINRLNNSN 386

Query: 223 PGDIILDPFFGSGTS-GAVAKKLRRSFIGIEMKQDYID 259
               ILDPF G+GTS    AK    +F G +     ID
Sbjct: 387 RKINILDPFVGAGTSYFQAAKFQNINFTGFDKNSTAID 424


>gi|297529332|ref|YP_003670607.1| ribosomal protein L11 methyltransferase [Geobacillus sp. C56-T3]
 gi|297252584|gb|ADI26030.1| ribosomal protein L11 methyltransferase [Geobacillus sp. C56-T3]
          Length = 312

 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 72/197 (36%), Gaps = 27/197 (13%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD-----GEKLHPTQKPEALLS 214
            A  +  +Y  +K + +   + +       S  E +   D     G   HPT     +  
Sbjct: 110 WATAWKKHYHPVKVSEKFTIVPTWETYEPASSDELIIEMDPGMAFGTGTHPTT---VMCL 166

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK--RIASVQPL 271
           + L    +PGD ++D   GSG     A  L  RS   +++    +D A    ++  VQ +
Sbjct: 167 QALEKYVRPGDHVIDVGTGSGILSIAAAMLGARSVRALDLDPVAVDSARLNVKLNKVQHI 226

Query: 272 GNIELTVLTGKRTEP--RVAFNLLVE-----RG----LIQPGQILTNA---QGNISATVC 317
             +    L     EP   +  N+L E      G    L++PG     +   Q        
Sbjct: 227 VTVSQNNLLDHIEEPADVIVANILAEIILRFTGDAYRLLKPGGRFITSGIIQAKKQDV-- 284

Query: 318 ADGTLISGTELGSIHRV 334
            DG L +G  +  I+ +
Sbjct: 285 KDGLLAAGFAIEEINVM 301


>gi|224438160|ref|ZP_03659095.1| adenine-specific DNA methylase [Helicobacter cinaedi CCUG 18818]
 gi|313144605|ref|ZP_07806798.1| modification methylase [Helicobacter cinaedi CCUG 18818]
 gi|313129636|gb|EFR47253.1| modification methylase [Helicobacter cinaedi CCUG 18818]
          Length = 406

 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIAT 262
           +P      +   +L         +LDP+ GSG+S     +   + F+G ++    I I+ 
Sbjct: 34  YPATMLPQIGYELLKEFKAKKTALLDPYCGSGSSFISGLEYGIKHFVGFDLNPLAILISK 93

Query: 263 KRIASVQ 269
            ++  ++
Sbjct: 94  AKLNYIE 100


>gi|115378941|ref|ZP_01466075.1| methyltransferase [Stigmatella aurantiaca DW4/3-1]
 gi|310821512|ref|YP_003953870.1| methyltransferase type 11 domain-containing protein [Stigmatella
           aurantiaca DW4/3-1]
 gi|115364058|gb|EAU63159.1| methyltransferase [Stigmatella aurantiaca DW4/3-1]
 gi|309394584|gb|ADO72043.1| Methyltransferase type 11 domain protein [Stigmatella aurantiaca
           DW4/3-1]
          Length = 247

 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 42/107 (39%), Gaps = 6/107 (5%)

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
           M  +W     + ++ +  +   ++ P +  + L  R+L     PG  +LD   G G    
Sbjct: 1   MGQEWYRDAFNITDPIWYEPLNEVAPAEVEQCL--RLLAL--PPGSKVLDLCCGQGRHAV 56

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
                     G+++  + + +A +R  + Q   N+E      ++  P
Sbjct: 57  ELALRGYQVTGLDISSERLALARQR--ATQAQVNVEWVQADMRQMPP 101


>gi|37521085|ref|NP_924462.1| hypothetical protein glr1516 [Gloeobacter violaceus PCC 7421]
 gi|35212081|dbj|BAC89457.1| glr1516 [Gloeobacter violaceus PCC 7421]
          Length = 449

 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 9/121 (7%)

Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
            F+ +A   A  D     ++ +          N D   LH    P  L ++ +VS     
Sbjct: 10  NFDSEAGIRAYYDQAPYPNYPLETT----HADNADALYLHNLMTPYYLRNQRVVSGAGKR 65

Query: 225 DIILDPFFGSGTSGAVAKKL--RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
             ILD   GSG +     +       +GI++ +  + +A +R+A      + E   L  +
Sbjct: 66  --ILDAGCGSGFTSLALAQANPGARIVGIDLSERSVAVARERLA-FHGFKSAEFHALPIE 122

Query: 283 R 283
           R
Sbjct: 123 R 123


>gi|309781899|ref|ZP_07676632.1| 3-hydroxyacyl-CoA dehydrogenase PaaC [Ralstonia sp. 5_7_47FAA]
 gi|308919540|gb|EFP65204.1| 3-hydroxyacyl-CoA dehydrogenase PaaC [Ralstonia sp. 5_7_47FAA]
          Length = 502

 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 47/146 (32%), Gaps = 13/146 (8%)

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV------QPLGNIELTVLTGKRTE 285
            G G +   A +        +     ++ A   +A        +     +    T  R  
Sbjct: 12  MGRGIAQIAA-QAGLRVKLFDANPQAVEAARTALADTLAKLASKGKLTADDADATIARLI 70

Query: 286 PRVAFNLL-----VERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSG 340
           P  A   L     V   +++   +  +    +   V AD  L S T   SI  + A    
Sbjct: 71  PAGALTDLADCDLVVEAIVEKLDVKRDLFRQLEDIVRADAILASNTSSLSITAIAATCKH 130

Query: 341 SETCNGWNFWY-FEKLGELHSINTLR 365
            E   G++F+     +  +  I+ LR
Sbjct: 131 PERVAGFHFFNPVPLMKVVEVIDGLR 156


>gi|17232840|ref|NP_489388.1| hypothetical protein alr5348 [Nostoc sp. PCC 7120]
 gi|17134487|dbj|BAB77047.1| alr5348 [Nostoc sp. PCC 7120]
          Length = 447

 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 2/77 (2%)

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYIDIATKRIASV 268
           E +++ ++   T P   ++ PF G G      +++ R  FIG +   + +     R    
Sbjct: 371 EGIVNYLINLYTNPNHFVIAPFIGHGEILVTCERMGRICFIG-DSNAELVSRGIGRWQKW 429

Query: 269 QPLGNIELTVLTGKRTE 285
                I+      K  +
Sbjct: 430 TSKKAIKSVASETKIKK 446


>gi|223986649|ref|ZP_03636641.1| hypothetical protein HOLDEFILI_03963 [Holdemania filiformis DSM
           12042]
 gi|223961380|gb|EEF65900.1| hypothetical protein HOLDEFILI_03963 [Holdemania filiformis DSM
           12042]
          Length = 453

 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 198 KDGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
           K   +++P Q  E L ++ + ++     + ++D + G+GT G  A +  +  IGIE+   
Sbjct: 280 KSFYQINPVQT-EVLYTKAIELAGLTGEETVIDVYCGTGTIGLSAARKAKRVIGIEIVPS 338

Query: 257 YIDIATK 263
            ++ A +
Sbjct: 339 AVEDAKR 345


>gi|15645044|ref|NP_207214.1| cyclopropane fatty acid synthase (cfa) [Helicobacter pylori 26695]
 gi|2313520|gb|AAD07482.1| cyclopropane fatty acid synthase (cfa) [Helicobacter pylori 26695]
          Length = 389

 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 50/307 (16%), Positives = 97/307 (31%), Gaps = 29/307 (9%)

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM----LQNLNFWILNDIVWRKSNPMPNF 140
            + W     +V+  + +++  G +   F +         ++   +   I     + + + 
Sbjct: 11  FKQWKNGDYQVVFWDNSVYRNGEHSPKFTLKIHRPLKFSDIKKDMSLTIAEAYMDGVIDI 70

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS---------DWLIPICSG 191
            G   +  H   +  +     K                  +           WL    S 
Sbjct: 71  EGSMDEVMHSLYLQTNYEHLHKHDNAKAIQKPIKESSNISKHYDLGNDFYSIWLDETLSY 130

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIG 250
           S     KD + LH  Q  + L   +     KPG+ +LD   G G      A++     +G
Sbjct: 131 SCAYFKKDDDTLHAAQL-QKLDHTLKKLHLKPGEKLLDIGCGWGYLSVKAAQEYGAEVMG 189

Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV-AFNLLVERGLI-QPGQILTNA 308
           I +  +    A KR+  +     + + +L  +  + R+  F+ +V  G+    G+     
Sbjct: 190 ITISSEQYKQANKRVQELGLEDKVTIKLLNYQDLDGRLYRFDKVVSVGMFEHVGKDNLPF 249

Query: 309 QGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
                  V   G +        +H +     G    N W   Y    G L S   LR ++
Sbjct: 250 YFKKVKEVLKRGGMFL------LHSILCCFEGKT--NAWVDKYIFPGGYLPS---LREVM 298

Query: 369 RKELYNC 375
              +  C
Sbjct: 299 -SVMSEC 304


>gi|239625145|ref|ZP_04668176.1| RNA methyltransferase [Clostridiales bacterium 1_7_47_FAA]
 gi|239519375|gb|EEQ59241.1| RNA methyltransferase [Clostridiales bacterium 1_7_47FAA]
          Length = 554

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 66/159 (41%), Gaps = 19/159 (11%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
           +C    R+ +K   +++P Q  E L  + L ++  K  ++++D + G GT G +A +   
Sbjct: 372 LCGCKFRISSKSFYQINPVQT-EVLYGKALELAGLKGQEVVIDAYCGIGTIGIIASRQAG 430

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILT 306
             IG+E+ QD +  A    A +  + NI        R         + ERG  +   ++ 
Sbjct: 431 QVIGVELNQDAVKDAVNN-AKMNDIDNIRFYCNDAGRF-----MVNMAERG-DKADVVIM 483

Query: 307 NAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCN 345
           +   + S     D          SI ++GA      +CN
Sbjct: 484 DPPRSGSTEEFMD----------SIAKLGAGKVVYVSCN 512


>gi|221195557|ref|ZP_03568612.1| methyltransferase [Atopobium rimae ATCC 49626]
 gi|221184744|gb|EEE17136.1| methyltransferase [Atopobium rimae ATCC 49626]
          Length = 195

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 34/126 (26%), Gaps = 26/126 (20%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
            P +S +L+  DPP+ +   G       SL                +          C R
Sbjct: 76  FPDESFNLVIFDPPHLIGKRGWRSDYYGSLDSHT------------WREDLAKGFRECLR 123

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
           VLKP G L                +     I    V       P    RR + +    I 
Sbjct: 124 VLKPYGVLV--------------FKWCECDIPLKDVLALCPAKPIIGNRRPKASKTHWIL 169

Query: 155 ASPSPK 160
               P+
Sbjct: 170 FMREPQ 175


>gi|150019658|ref|YP_001311912.1| RNA methyltransferase [Clostridium beijerinckii NCIMB 8052]
 gi|149906123|gb|ABR36956.1| RNA methyltransferase, TrmA family [Clostridium beijerinckii NCIMB
           8052]
          Length = 459

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 8/103 (7%)

Query: 210 EALLSRILVSSTKPGD-IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           E L ++ L  +   GD I+ D + G+GT      +  R   G+E+ +  ID A    A +
Sbjct: 293 EVLYNKALEYADLSGDEIVFDAYCGAGTITLFLSQNARKVYGVEIVEQAIDNAIDN-AEI 351

Query: 269 QPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
             + N E  V   +   P      L++ G I+P  I+ +    
Sbjct: 352 NGIDNSEFYVGKSEEVIP-----ELIKNG-IKPDIIVVDPPRK 388


>gi|261821344|ref|YP_003259450.1| 23S rRNA m(2)G2445 methyltransferase [Pectobacterium wasabiae
           WPP163]
 gi|261605357|gb|ACX87843.1| putative RNA methylase [Pectobacterium wasabiae WPP163]
          Length = 705

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 20/102 (19%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++I+ + +S L     +  D+IF DPP         +     + ++  
Sbjct: 579 NLRVNGLTGRQHRLIQADCLSWLHN-GHEQFDVIFIDPP--------TFSNSKRMEESFD 629

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
              D             A +   +R+L+  GT+    +    
Sbjct: 630 VQRDHL-----------ALMTDLKRLLRRGGTIMFSNNKRGF 660


>gi|218257993|ref|ZP_03474446.1| hypothetical protein PRABACTJOHN_00099 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225828|gb|EEC98478.1| hypothetical protein PRABACTJOHN_00099 [Parabacteroides johnsonii
           DSM 18315]
          Length = 189

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ 52
            +I+G+    L   PA+  D IFADPPY L+
Sbjct: 95  TLIRGDVFRYLHSAPARHFDFIFADPPYALK 125


>gi|182435968|ref|YP_001823687.1| putative methyltransferase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326776592|ref|ZP_08235857.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptomyces cf. griseus XylebKG-1]
 gi|178464484|dbj|BAG19004.1| putative methyltransferase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326656925|gb|EGE41771.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptomyces cf. griseus XylebKG-1]
          Length = 281

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 19/110 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY-------NLQLNGQLYRPDHSLVDAVTDSWDK 74
            + +G+++S L +L    VDL+ ++PPY        +    + + P+ +L     D  D 
Sbjct: 161 TVHRGDALSALPEL-DGQVDLVISNPPYIPLTEWEYVAPEARDHDPEMALFSG-EDGLDT 218

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
               E              R+L+P G + +  +     ++  +      W
Sbjct: 219 IRGIE----------RTAHRLLRPGGLVVIEHADTQGGQVPWIFTEERGW 258


>gi|78484787|ref|YP_390712.1| ribosomal protein L11 methyltransferase [Thiomicrospira crunogena
           XCL-2]
 gi|123555927|sp|Q31II5|PRMA_THICR RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|78363073|gb|ABB41038.1| LSU ribosomal protein L11P methyltransferase [Thiomicrospira
           crunogena XCL-2]
          Length = 294

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 6/103 (5%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYI 258
           G   HPT    AL    L  +      ++D   GSG     A+KL    + G ++    I
Sbjct: 138 GTGTHPTT---ALCLTWLDQNPPTDLTVIDYGCGSGVLALAAEKLGAKHVKGTDIDPQAI 194

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP 301
             + +   + +   NIE  ++   ++EP       +  G ++ 
Sbjct: 195 IASQQ--NADRNNANIEFKLVKEFQSEPVDLLIANILAGPLKA 235


>gi|311070335|ref|YP_003975258.1| hypothetical protein BATR1942_17040 [Bacillus atrophaeus 1942]
 gi|310870852|gb|ADP34327.1| hypothetical protein BATR1942_17040 [Bacillus atrophaeus 1942]
          Length = 229

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 57/144 (39%), Gaps = 13/144 (9%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
             E L   +L         +LD   G+G  G   +    +  GIE   D  + A  ++A 
Sbjct: 16  YYEGLNPYLLKKINGHWKTVLDVGCGTGNLGEALQDQGITVYGIEAFPDAAEQAENKLAH 75

Query: 268 VQPLGNIELTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNAQGNISATVCADGT-LISG 325
           V   G+IE   L  +  +   + F  ++E  L+ P  +L N + +    +  DGT L   
Sbjct: 76  VL-CGDIERLALPYEPEQFDCILFGDVLEH-LVNPWSVLENLRPH----LKKDGTVLACV 129

Query: 326 TELGSIHRVGAKVSGSETCNGWNF 349
             +G I  V   ++G      W +
Sbjct: 130 PNVGHISVVLELLAGK-----WTY 148


>gi|311108735|ref|YP_003981588.1| hypothetical protein AXYL_05573 [Achromobacter xylosoxidans A8]
 gi|310763424|gb|ADP18873.1| hypothetical protein AXYL_05573 [Achromobacter xylosoxidans A8]
          Length = 194

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYN 50
           +I  G+++ V E++ A   DLI  DPP+ 
Sbjct: 108 RIHVGDAMQVAERMDASRFDLIMLDPPFG 136


>gi|315586931|gb|ADU41312.1| cyclopropane-fatty-acyl-phospholipid synthase [Helicobacter pylori
           35A]
 gi|317180162|dbj|BAJ57948.1| cyclopropane fatty acid synthase [Helicobacter pylori F32]
          Length = 389

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 78/231 (33%), Gaps = 16/231 (6%)

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM----LQNLNFWILNDIVWRKSNPMPNF 140
            + W     +V+  + +++  G +   F +         ++   +   I     + + + 
Sbjct: 11  FKQWKNGDYQVVFWDNSVYRNGEHSPKFTLKIHRPLKFSDIKKDMSLTIAEAYMDGVIDI 70

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS---------DWLIPICSG 191
            G   +  H   +  +     K                  +           WL    S 
Sbjct: 71  EGSMDEVMHSLYLQTNYEHLHKHDNAKAIQKPIKESSNISKHYDLGNDFYSIWLDETLSY 130

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG-TSGAVAKKLRRSFIG 250
           S     KD + LH  Q  + L   +     KPG+ +LD   G G  S   A++     +G
Sbjct: 131 SCAYFKKDDDTLHAAQL-QKLDHTLKKLHLKPGEKLLDIGCGWGYLSIKAAQEYGAQVMG 189

Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV-AFNLLVERGLIQ 300
           I +  +    A KR+  +     + + +L  +  + R+  F+ +V  G+ +
Sbjct: 190 ITISSEQYKQANKRVQELGLEDKVTIKLLNYQDLDGRLYRFDKVVSVGMFE 240


>gi|228928452|ref|ZP_04091492.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228947030|ref|ZP_04109326.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228812604|gb|EEM58929.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228831183|gb|EEM76780.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
          Length = 390

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 77/214 (35%), Gaps = 12/214 (5%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
            + S    +K    +  A      +   +  WL    + S      + + L   Q    +
Sbjct: 96  YFKSKWNFSKQKNKDDIAHHYDIGNDFYKL-WLDETMTYSCAYFQNEQDSLTTAQ-HNKV 153

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
              +   + + GD +LD   G G    A AK+     +G+ + ++     ++RI   + L
Sbjct: 154 NHILKKLNLQKGDTLLDIGCGWGELITAAAKQYGVKAMGVTLSEEQYAKTSERIKQ-EGL 212

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLI-QPGQILTNAQGNISATVCADGTLISGTELGS 330
            ++    L   R      F+ +V  G+I   G+            +  DG +        
Sbjct: 213 TDLVEVSLLDYRDIKNHKFDKIVSVGMIEHVGKDNITQYFETVNELLNDGGISL------ 266

Query: 331 IHRVGAKVSGSETCNGWNFWYFEKLGELHSINTL 364
           +H + +  +G  T NGW   Y    G + ++N L
Sbjct: 267 LHCITSPANGGAT-NGWIEKYIFPGGYVPAVNEL 299


>gi|227829958|ref|YP_002831737.1| protein of unknown function DUF1156 [Sulfolobus islandicus
           L.S.2.15]
 gi|227456405|gb|ACP35092.1| protein of unknown function DUF1156 [Sulfolobus islandicus
           L.S.2.15]
          Length = 931

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 38/126 (30%), Gaps = 28/126 (22%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN-------------------------LQ 52
           + K +II  +   +   L  K VD+I  DPPY                           Q
Sbjct: 504 DSKIEIINSDVNEL--TLSDK-VDVIVTDPPYADDVPYPEVSDFYYVWLKRIIPFPYKTQ 560

Query: 53  LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
               + R      +      D   S+E +             +LK +G L    ++ +  
Sbjct: 561 WEEFVPRDIGVDEERSKVFGDDIGSYEYFRNKLAQTFNKLAEILKDDGLLITFYNHTSSD 620

Query: 113 RIGTML 118
              ++L
Sbjct: 621 AWVSLL 626


>gi|208434911|ref|YP_002266577.1| cyclopropane fatty acid synthase [Helicobacter pylori G27]
 gi|210135201|ref|YP_002301640.1| cyclopropane fatty acid synthase [Helicobacter pylori P12]
 gi|217032292|ref|ZP_03437789.1| hypothetical protein HPB128_142g40 [Helicobacter pylori B128]
 gi|298735962|ref|YP_003728487.1| cyclopropane-fatty-acyl-phospholipid synthase [Helicobacter pylori
           B8]
 gi|208432840|gb|ACI27711.1| cyclopropane fatty acid synthase [Helicobacter pylori G27]
 gi|210133169|gb|ACJ08160.1| cyclopropane fatty acid synthase [Helicobacter pylori P12]
 gi|216946058|gb|EEC24671.1| hypothetical protein HPB128_142g40 [Helicobacter pylori B128]
 gi|298355151|emb|CBI66023.1| cyclopropane-fatty-acyl-phospholipid synthase [Helicobacter pylori
           B8]
 gi|317012813|gb|ADU83421.1| cyclopropane fatty acid synthase [Helicobacter pylori Lithuania75]
          Length = 389

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 50/307 (16%), Positives = 97/307 (31%), Gaps = 29/307 (9%)

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM----LQNLNFWILNDIVWRKSNPMPNF 140
            + W     +V+  + +++  G +   F +         ++   +   I     + + + 
Sbjct: 11  FKQWKNGDYQVVFWDNSVYRNGEHSPKFTLKIHRPLKFSDIKKDMSLTIAEAYMDGVIDI 70

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS---------DWLIPICSG 191
            G   +  H   +  +     K                  +           WL    S 
Sbjct: 71  EGSMDEVMHSLYLQTNYEHLHKHDNAKAIQKPIKESSNISKHYDLGNDFYSIWLDETLSY 130

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIG 250
           S     KD + LH  Q  + L   +     KPG+ +LD   G G      A++     +G
Sbjct: 131 SCAYFKKDDDTLHAAQL-QKLDHTLKKLHLKPGEKLLDIGCGWGYLSVKAAQEYGAEVMG 189

Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV-AFNLLVERGLI-QPGQILTNA 308
           I +  +    A KR+  +     + + +L  +  + R+  F+ +V  G+    G+     
Sbjct: 190 ITISSEQYKQANKRVQELGLEDKVTIKLLNYQDLDGRLYRFDKVVSVGMFEHVGKDNLPF 249

Query: 309 QGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
                  V   G +        +H +     G    N W   Y    G L S   LR ++
Sbjct: 250 YFKKVKEVLKRGGMFL------LHSILCCFEGKT--NAWVDKYIFPGGYLPS---LREVM 298

Query: 369 RKELYNC 375
              +  C
Sbjct: 299 -SVMSEC 304


>gi|167749894|ref|ZP_02422021.1| hypothetical protein EUBSIR_00862 [Eubacterium siraeum DSM 15702]
 gi|167657206|gb|EDS01336.1| hypothetical protein EUBSIR_00862 [Eubacterium siraeum DSM 15702]
          Length = 302

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 29/97 (29%), Gaps = 20/97 (20%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           +  KS D I+ DPPY               VD   DSWD+ S F  + A   +       
Sbjct: 183 MAGKS-DFIYCDPPY-----------IGRHVDYY-DSWDEQSEFALHKALVESGAKFML- 228

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
                 + W    Y     I T+  +           
Sbjct: 229 ------STWDHNDYRENEYISTVWSDCQKITREHFYH 259


>gi|7157956|gb|AAF37354.1|AF202319_3 BchM [Rhodospirillum rubrum]
          Length = 236

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 25/51 (49%)

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278
           LD   G+G+    A +   S + I++    ID+A +R A V   G IE  V
Sbjct: 66  LDAGCGTGSFAVEAARRGASVVAIDISPTLIDMARERAAEVTGPGRIEFRV 116


>gi|241895700|ref|ZP_04782996.1| ribosomal protein L11 methyltransferase [Weissella
           paramesenteroides ATCC 33313]
 gi|241871067|gb|EER74818.1| ribosomal protein L11 methyltransferase [Weissella
           paramesenteroides ATCC 33313]
          Length = 317

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 7/128 (5%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYI 258
           G   HPT K   L+ + L    + G+ ++D   GSG  G  A+ L    I G ++ +  +
Sbjct: 155 GTGTHPTTK---LMIQALEVIVRGGESVIDLGTGSGVLGIAARLLGAGEILGTDIDEVAV 211

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
             A   +       ++ L V    +  P   +++++   ++   ++L     N++  +  
Sbjct: 212 KSAQGNVDLNPKAADMTLIVSDLLKDVPEKKYDIVI-ANML--AEVLDMLIPNVNDILQP 268

Query: 319 DGTLISGT 326
           +G L+   
Sbjct: 269 NGHLLLSG 276


>gi|169351042|ref|ZP_02867980.1| hypothetical protein CLOSPI_01820 [Clostridium spiroforme DSM 1552]
 gi|169292104|gb|EDS74237.1| hypothetical protein CLOSPI_01820 [Clostridium spiroforme DSM 1552]
          Length = 379

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 210 EALLSRILVSSTKPGD-IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK--RIA 266
           +AL ++ +      GD I++D + G GT G VA K  +  IG+E+ QD I  A    R+ 
Sbjct: 217 QALYNKAIDLLELKGDEIVIDAYCGIGTIGMVAAKKAKEVIGVELNQDAIKDANNNARMN 276

Query: 267 SV 268
            +
Sbjct: 277 KI 278


>gi|196037603|ref|ZP_03104914.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
 gi|196031845|gb|EDX70441.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
          Length = 229

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 56/160 (35%), Gaps = 24/160 (15%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L  +  E  +    P  LL  I     +    +LD     G  GA  K+      GIE  
Sbjct: 8   LYEEKSEHYYNAANP-NLLKHIKKEWKE----VLDIGCSGGALGAAIKENGTRVSGIEAF 62

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNA---QG 310
            +  + A +R+  V  LG+IE   L  +  +   V F  ++E         L +      
Sbjct: 63  PEAAEKAKERLDHVI-LGDIEKIDLPYEEGQFDCVIFGDVLEH--------LFDPWAVIE 113

Query: 311 NISATVCADGTLISGTELGSIHRVGAKVSGSETCNG-WNF 349
            +   +  +G +++     SI  V      +    G W +
Sbjct: 114 KVKPYIKKNGVILA-----SIPNVAHISVLAPLLAGNWTY 148


>gi|238019081|ref|ZP_04599507.1| hypothetical protein VEIDISOL_00943 [Veillonella dispar ATCC 17748]
 gi|237864336|gb|EEP65626.1| hypothetical protein VEIDISOL_00943 [Veillonella dispar ATCC 17748]
          Length = 289

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 8/123 (6%)

Query: 4   KNSLAINENQNSIFEWKDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
            ++L + E     F   D+  +++ +  S L+   A+  DLI ++PPY    + +L    
Sbjct: 151 TDALTVAEENRERFNLNDRVQLLESDMFSALDG-KAEKFDLIVSNPPYIRTGDAKLLSQ- 208

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
               D + +        E    F R    AC   LKP G +     Y     + ++L+  
Sbjct: 209 ----DVLNEPHIALFGGEDGLEFYRILAKACGTYLKPQGRIAFEIGYDQAEEVKSLLKEA 264

Query: 122 NFW 124
             +
Sbjct: 265 GHY 267


>gi|238013244|gb|ACR37657.1| unknown [Zea mays]
          Length = 198

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 214 SRILVSSTKPGDII----LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            R L     P D +    LD   GSG SG    +    +IG ++ +  +D+A +R
Sbjct: 37  ERALELLALPNDGVPKLLLDIGCGSGLSGETLTEHGHHWIGYDISKSMLDVALER 91


>gi|217967343|ref|YP_002352849.1| ribosomal protein L11 methyltransferase [Dictyoglomus turgidum DSM
           6724]
 gi|226710074|sp|B8E1A7|PRMA_DICTD RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|217336442|gb|ACK42235.1| ribosomal protein L11 methyltransferase [Dictyoglomus turgidum DSM
           6724]
          Length = 299

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 10/122 (8%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYI 258
           G   HPT     +   +L    K G  +LD   GSG    VAKKL    + G+++ +  I
Sbjct: 143 GTGNHPTTI---MCIEMLQKYLKEGMDVLDVGTGSGILSIVAKKLGGDKVKGVDIDEKAI 199

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           ++A K           +   L     E       +V   LI   +I+     N+   +  
Sbjct: 200 EVAKKNAEGNHVEVEFQKNDLIDGINE----KYDIVVANLI--AEIILKLNANVKRVLKT 253

Query: 319 DG 320
           DG
Sbjct: 254 DG 255


>gi|197124584|ref|YP_002136535.1| hypothetical protein AnaeK_4203 [Anaeromyxobacter sp. K]
 gi|196174433|gb|ACG75406.1| conserved hypothetical protein [Anaeromyxobacter sp. K]
          Length = 247

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           ++R L++ T    ++ DPF G GT  AVA       +G+E+ 
Sbjct: 173 VARFLLAETGCRTVV-DPFCGLGTMLAVANAHGLDGVGVELS 213


>gi|167760090|ref|ZP_02432217.1| hypothetical protein CLOSCI_02462 [Clostridium scindens ATCC 35704]
 gi|167662215|gb|EDS06345.1| hypothetical protein CLOSCI_02462 [Clostridium scindens ATCC 35704]
          Length = 639

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 6/74 (8%)

Query: 1   MSQKNSLAINENQNSIFE--WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
           + Q+   A+    N+IF+   ++K   G+++ V  K P    DL++ DPPY   L+   Y
Sbjct: 460 LEQQFLEAVESINNAIFDNGCENKSKHGDAMEVKIKHP----DLVYIDPPYYSPLSDNEY 515

Query: 59  RPDHSLVDAVTDSW 72
              +  V+ +   W
Sbjct: 516 VRRYHFVEGLARDW 529


>gi|206977676|ref|ZP_03238568.1| conserved hypothetical protein [Bacillus cereus H3081.97]
 gi|217958792|ref|YP_002337340.1| hypothetical protein BCAH187_A1370 [Bacillus cereus AH187]
 gi|222094939|ref|YP_002528999.1| o-antigen biosynthesis protein; glycosyltransferase;
           methyltransferase [Bacillus cereus Q1]
 gi|229138004|ref|ZP_04266602.1| O-antigen biosynthesis protein [Bacillus cereus BDRD-ST26]
 gi|206744104|gb|EDZ55519.1| conserved hypothetical protein [Bacillus cereus H3081.97]
 gi|217063445|gb|ACJ77695.1| conserved hypothetical protein [Bacillus cereus AH187]
 gi|221238997|gb|ACM11707.1| possible O-antigen biosynthesis protein; possible
           glycosyltransferase; possible methyltransferase
           [Bacillus cereus Q1]
 gi|228645349|gb|EEL01583.1| O-antigen biosynthesis protein [Bacillus cereus BDRD-ST26]
          Length = 229

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 57/165 (34%), Gaps = 24/165 (14%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           S    L  +     +    P  LL  I     +    +LD    SG  GA  K+      
Sbjct: 3   SPKNSLYEEKSGHYYNAVNP-NLLKHIKKEWKE----VLDIGCSSGALGAAIKENGTRVS 57

Query: 250 GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNA 308
           GIE   +  + A +++  V  LG+IE   +  +  +   V F  ++E         L + 
Sbjct: 58  GIEAFPEAAEQAKEKLDHVV-LGDIETMDMPYEEEQFDCVIFGDVLEH--------LFDP 108

Query: 309 ---QGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNG-WNF 349
                 +   +  +G +++     SI  V      +    G W +
Sbjct: 109 WAVIEKVKPYIKENGVILA-----SIPNVAHISVLAPLLAGNWTY 148


>gi|75908802|ref|YP_323098.1| ParB family protein [Anabaena variabilis ATCC 29413]
 gi|75702527|gb|ABA22203.1| ParB family protein [Anabaena variabilis ATCC 29413]
          Length = 447

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIG 250
           E +++ ++   T P   ++ PF G G      +++ R  FIG
Sbjct: 371 EGIVNYLINLYTSPNHFVIAPFMGHGEILVTCERMGRICFIG 412


>gi|42526220|ref|NP_971318.1| adenine-specific DNA modification methyltransferase [Treponema
           denticola ATCC 35405]
 gi|41816332|gb|AAS11199.1| adenine-specific DNA modification methyltransferase [Treponema
           denticola ATCC 35405]
          Length = 370

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 58/165 (35%), Gaps = 28/165 (16%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH------ 62
           +  N NS  E    I   +++ + +++    VD+ + DPPYN    G  Y   +      
Sbjct: 218 VFSNFNSELE----IFTKDAVILSKEIKN--VDIAYIDPPYNQHPYGSNYFMLNLILKNR 271

Query: 63  -----SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH-----NIF 112
                S V  +T  W++    + Y A     L +   ++      + + SY+     +  
Sbjct: 272 LDVPISPVSGITQGWNRSVFNKPYLA-----LKSMEEIISSLDACYAVISYNSEGFISFE 326

Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
            +  MLQ        +I +       N   +R  +  E L     
Sbjct: 327 EMTNMLQKYGELKTVEIKYNTFRGSRNL-NKRNIHVSEYLFVLKK 370


>gi|16800331|ref|NP_470599.1| hypothetical protein lin1262 [Listeria innocua Clip11262]
 gi|16413736|emb|CAC96493.1| lin1262 [Listeria innocua Clip11262]
          Length = 445

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 48/136 (35%), Gaps = 26/136 (19%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           I  NS++  + +   S+DL+F  PPY               ++  +D+ +  S+ E Y+ 
Sbjct: 279 ITDNSLNADKHIEDNSMDLLFTCPPYF-------------DLEVYSDNKEDISNME-YEE 324

Query: 84  FTRAW----LLACRRVLKPNGTLWVIGSYHNIFRI--------GTMLQNLNFWILNDIVW 131
           F + +         ++      + VI    +             ++ +    +  ND++ 
Sbjct: 325 FIKVYSEILAKGANKLKDNRFAIVVISDVRDKAGFYRDLTGLTKSVFEKNGIYFYNDLIL 384

Query: 132 RKSNPMPNFRGRRFQN 147
             S      R RR   
Sbjct: 385 LNSLGSGALRARRNMR 400



 Score = 36.5 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ-PLGNIELTVLTG 281
               I DPF G    G VAK L   + GI+++++ ++    RI + +  L  I       
Sbjct: 226 ESAKIYDPFAGGSVRGIVAKVLGHEYTGIDLRKEQVEA--NRINAKEIGLDGINWITDNS 283

Query: 282 KRTEPRVAFNLL 293
              +  +  N +
Sbjct: 284 LNADKHIEDNSM 295


>gi|320527423|ref|ZP_08028604.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Solobacterium moorei
           F0204]
 gi|320132136|gb|EFW24685.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Solobacterium moorei
           F0204]
          Length = 377

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 10/116 (8%)

Query: 156 SPSPKAKGYTFNYDALKA-----ANEDVQMRSDWLIPICSGSE-RLRNKDGEKLHPTQKP 209
              P+ K    N++          +E V     ++     G E R+ +K   +++P Q  
Sbjct: 159 KKFPQIKTIILNFNRAHTSMILGKDERVLYGPGYITDRIGGLEFRISSKSFYQVNPEQT- 217

Query: 210 EALLSRILVSSTK--PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
             +L R  +S  K    D++LD   G GT   +A +  +  IG+E+    I  A  
Sbjct: 218 -EVLYRTALSLVKIKDTDVVLDACCGIGTISLLAAQSAKHVIGVEINPQAIRDAKN 272


>gi|297624805|ref|YP_003706239.1| rRNA (guanine-N(2)-)-methyltransferase [Truepera radiovictrix DSM
           17093]
 gi|297165985|gb|ADI15696.1| rRNA (guanine-N(2)-)-methyltransferase [Truepera radiovictrix DSM
           17093]
          Length = 391

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 195 LRNKDGEKLHPTQKP--EALLSRILVSSTKPG-DIILDPFFGSGTSGAVAKKLRRS 247
             ++ G + H  + P  E L + IL++   P  D+I+DP  GSGT    A++L R 
Sbjct: 177 HLHRRGYRTHVGEAPLRETLAAGILLALGAPAFDLIVDPMCGSGTLLIEAERLARR 232


>gi|262368765|ref|ZP_06062094.1| methyltransferase [Acinetobacter johnsonii SH046]
 gi|262316443|gb|EEY97481.1| methyltransferase [Acinetobacter johnsonii SH046]
          Length = 224

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 12/98 (12%)

Query: 184 WLIPICSGSE--------RLRNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGS 234
           WLIP    ++        R+ N+    +       A+   +L       D ++LD   GS
Sbjct: 40  WLIPPVFPTDKLDDEIIRRIWNETPYWIFCWASGLAMAQWLLAEPHHVRDKVVLDFGAGS 99

Query: 235 GTSGAVAKKLR-RSFIGIEMKQDYIDI--ATKRIASVQ 269
           G     AK    +  I  ++    +D   A   + +V+
Sbjct: 100 GVVAIAAKMAGAKRVICCDIDAVSLDACRANAELNNVE 137


>gi|261840082|gb|ACX99847.1| hypothetical protein HPKB_1300 [Helicobacter pylori 52]
          Length = 236

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 17/79 (21%)

Query: 20  KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
            + +IKGN++  L  L    AK V  I+ DPPYN   +   Y              D F 
Sbjct: 172 TNYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNY-------------NDNF- 217

Query: 77  SFEAYDAFTRAWLLACRRV 95
           +  ++  F +  L   R  
Sbjct: 218 NHSSWLVFMKNRLEVAREF 236


>gi|240114016|ref|ZP_04728506.1| putative 5-methylcytosine methyltransferase [Neisseria gonorrhoeae
           MS11]
          Length = 333

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 19/132 (14%)

Query: 20  KDKIIKGNSISVLEK------LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           + ++++ + ++ L +      L  +SVDL+   PP              S+   +  ++ 
Sbjct: 48  RHQLLQKD-LTTLTEQDLTNCLNGQSVDLVIGGPP----------CQGFSMAGKIGRTFT 96

Query: 74  KFSSFEAYDAFTR--AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
                  +  F R    +     V++    L+   S      I    QN+ + +   I+ 
Sbjct: 97  DDPRNHLFKEFVRIVKIVQPYFFVMENVARLYTHNSGRTRIEIIQAFQNIGYSVECKILS 156

Query: 132 RKSNPMPNFRGR 143
                +P  R R
Sbjct: 157 AADFGVPQIRSR 168


>gi|154504511|ref|ZP_02041249.1| hypothetical protein RUMGNA_02015 [Ruminococcus gnavus ATCC 29149]
 gi|153794993|gb|EDN77413.1| hypothetical protein RUMGNA_02015 [Ruminococcus gnavus ATCC 29149]
          Length = 318

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 10/124 (8%)

Query: 146 QNAHETLIW--ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
           ++  E + W         + Y  +   + +  E     +D ++             G  +
Sbjct: 100 ESQTEDVDWVNNWKQYFHQFYVDDILIIPSWEEVKPEDNDKMVIHIDP----GTAFGTGM 155

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF-IGIEMKQDYIDIAT 262
           H T     L  R +   T P   ILD   GSG  G +A K    + +G ++    I+   
Sbjct: 156 HETT---QLCIRQIRKYTTPETTILDVGCGSGILGMLALKFGAKYSVGTDLDPCAIEATY 212

Query: 263 KRIA 266
           + + 
Sbjct: 213 ENME 216


>gi|153855114|ref|ZP_01996308.1| hypothetical protein DORLON_02321 [Dorea longicatena DSM 13814]
 gi|149752429|gb|EDM62360.1| hypothetical protein DORLON_02321 [Dorea longicatena DSM 13814]
          Length = 387

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 63/188 (33%), Gaps = 10/188 (5%)

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
            G+   + H       PS   K       +      D      WL    S S      + 
Sbjct: 84  MGKFSTDEHHLKSIMFPSSSKKNQKKEVSSHYDIGNDFYKL--WLDETMSYSCGYFKHED 141

Query: 201 EKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYI 258
           + L+  QK +  +  IL     K G  +LD   G G      AKK +    GI + ++  
Sbjct: 142 DTLYQAQKNK--VDYILEKLYLKEGMTLLDIGCGWGFLLIEAAKKYKIKGTGITLSEEQY 199

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVA--FNLLVERGLI-QPGQILTNAQGNISAT 315
               KRI   + L +     L   R  P     ++ +V  G++   G+       +  + 
Sbjct: 200 KECQKRIKE-EGLSDYLEVRLMDYRDLPSDGKMYDRVVSVGMLEHVGRENYQLYLDCVSK 258

Query: 316 VCADGTLI 323
           V  DG L 
Sbjct: 259 VMKDGGLF 266


>gi|83591958|ref|YP_425710.1| Mg-protoporphyrin IX methyl transferase [Rhodospirillum rubrum ATCC
           11170]
 gi|83574872|gb|ABC21423.1| Magnesium protoporphyrin O-methyltransferase [Rhodospirillum rubrum
           ATCC 11170]
          Length = 236

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 25/51 (49%)

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278
           LD   G+G+    A +   S + I++    ID+A +R A V   G IE  V
Sbjct: 66  LDAGCGTGSFAVEAARRGASVVAIDISPTLIDLARERAAEVTGPGRIEFRV 116


>gi|325121512|gb|ADY81035.1| tRNA(guanine-7)methyltransferase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 246

 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 23/130 (17%)

Query: 13  QNSIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
           +  I E K+ +++  ++I VL ++P  S++ +            QLY P         D 
Sbjct: 114 EAGIAEVKNLRVLDADAIQVLREMPDNSINCV------------QLYFP---------DP 152

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           W K   F+         +    + L+  GT      +         + +    + N    
Sbjct: 153 WQKKRHFKR-RFVIHERMQLVEQKLELGGTFHAATDWEPYAEWMLDVLDNRPDLENLAGK 211

Query: 132 RKSNPMPNFR 141
             S P P++R
Sbjct: 212 GNSYPRPDWR 221


>gi|300866600|ref|ZP_07111288.1| putative glycosyl transferase [Oscillatoria sp. PCC 6506]
 gi|300335372|emb|CBN56448.1| putative glycosyl transferase [Oscillatoria sp. PCC 6506]
          Length = 559

 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 8/120 (6%)

Query: 210 EALLSRI---LVSSTKPGD-IILDPFFGSGTSGAVAKKLRRS--FIGIEMKQDYIDIATK 263
             LL R+   +     P   IIL+   G+GT G   K++     +IGIE       IA++
Sbjct: 1   MELLDRVNPDIFKLLPPDAKIILEVGCGTGTLGEQYKRINPHSLYIGIERDPQKAKIASE 60

Query: 264 RIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
           R+  V  +G++E   +           + LV   L+             S  +  DG ++
Sbjct: 61  RLDRVI-IGDVEQLDIQSFDIAEET-VDCLVYNHLLSYLTNPWELLRQHSTLLNPDGQIL 118


>gi|269838284|ref|YP_003320512.1| hypothetical protein Sthe_2269 [Sphaerobacter thermophilus DSM
           20745]
 gi|269787547|gb|ACZ39690.1| protein of unknown function DUF450 [Sphaerobacter thermophilus DSM
           20745]
          Length = 394

 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 8/89 (8%)

Query: 288 VAFNLLVERGLIQPGQ--ILTNAQGNISAT--VCADGTLISGTEL-GSIHRVGAKVSGSE 342
           V  + LV+ G++  G   IL   +    A   V  DG +I G +   S+       + S 
Sbjct: 295 VHLSDLVKSGVLPAGTPVILVGPRNKDLAHAEVSQDGHIIWGGKRYRSLSDRAFCAAFSP 354

Query: 343 ---TCNGWNFWYFEKLGELHSINTLRILV 368
              + NGW  WY         +  LR   
Sbjct: 355 PRVSFNGWKHWYAVLPRGRVQLAELREEY 383


>gi|260549984|ref|ZP_05824199.1| tRNA(guanine-7)methyltransferase [Acinetobacter sp. RUH2624]
 gi|260406976|gb|EEX00454.1| tRNA(guanine-7)methyltransferase [Acinetobacter sp. RUH2624]
          Length = 246

 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 23/130 (17%)

Query: 13  QNSIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
           +  I E K+ +++  ++I VL ++P  S++ +            QLY P         D 
Sbjct: 114 EAGIAELKNLRVLDADAIQVLREMPDNSINCV------------QLYFP---------DP 152

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
           W K   F+         +    + L+  GT      +         + +    + N    
Sbjct: 153 WQKKRHFKR-RFVIHERMQLVEQKLELGGTFHAATDWEPYAEWMLDVLDNRPNLENLAGK 211

Query: 132 RKSNPMPNFR 141
             S P P++R
Sbjct: 212 GNSYPRPDWR 221


>gi|255088850|ref|XP_002506347.1| predicted protein [Micromonas sp. RCC299]
 gi|226521619|gb|ACO67605.1| predicted protein [Micromonas sp. RCC299]
          Length = 449

 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 11/95 (11%)

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
           EA   R++    +PG+I+ D   G G     A K  R     ++       +  R A V 
Sbjct: 220 EAEHKRLIEQI-RPGEILCDAMCGIGPFAVPAAKAGRRVYANDLNP-----SCARYARVN 273

Query: 270 PLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQI 304
            +GN    ++       R     L+ R L++PG++
Sbjct: 274 CVGNKVKNLVKCYNMCAR----ELI-RKLLRPGKV 303


>gi|46447178|ref|YP_008543.1| putative rRNA methyltransferse [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|51316628|sp|Q6MAY1|Y1544_PARUW RecName: Full=Uncharacterized RNA methyltransferase pc1544
 gi|46400819|emb|CAF24268.1| putative rRNA methyltransferse [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 442

 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 48/126 (38%), Gaps = 16/126 (12%)

Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
             R  N +E L++     + K Y  +++            S +  P    +E+L ++   
Sbjct: 229 KGRPTNFYEMLLYGPDHIREKLYLPDFNEAIQTLNFRISPSAFFQPNTEQAEKLYSQA-- 286

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
                         + ++      ++ D + G+GT G  + K  +  IGIE+ ++ +  A
Sbjct: 287 --------------LKLADLSASHVVYDLYCGTGTLGICSAKYVKEVIGIELSRESVLDA 332

Query: 262 TKRIAS 267
            + +  
Sbjct: 333 RENVKE 338


>gi|225871008|ref|YP_002746955.1| RNA methyltransferase [Streptococcus equi subsp. equi 4047]
 gi|225700412|emb|CAW94786.1| putative RNA methyltransferase [Streptococcus equi subsp. equi
           4047]
          Length = 455

 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 5/84 (5%)

Query: 203 LHPTQKPEALLSRILVSSTKP-GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           L+PTQ  E L S+++ +      + I+D + G G+ G       RS  G+++  + I  A
Sbjct: 284 LNPTQT-EVLYSQVVQALEPTAEEHIIDAYCGVGSIGLAVANKVRSVRGMDIIPEAIADA 342

Query: 262 TKRIASVQPLGNIELTVLTGKRTE 285
            K   + Q LG       TGK  E
Sbjct: 343 RK---NAQALGFDNAYYETGKAEE 363


>gi|170289516|ref|YP_001739754.1| ribosomal L11 methyltransferase [Thermotoga sp. RQ2]
 gi|226710126|sp|B1L841|PRMA_THESQ RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|170177019|gb|ACB10071.1| ribosomal L11 methyltransferase [Thermotoga sp. RQ2]
          Length = 264

 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYI 258
           G  LHPT +   +    L    K G+ +LD   G+G     AKKL     + +++ +  +
Sbjct: 109 GTGLHPTTR---MSVFFLKKYLKEGNTVLDVGCGTGILAIAAKKLGASQVVAVDVDEQAV 165

Query: 259 DIATKRIAS 267
           ++A + +  
Sbjct: 166 EVAEENVRK 174


>gi|145592488|ref|YP_001154490.1| hypothetical protein Pars_2294 [Pyrobaculum arsenaticum DSM 13514]
 gi|145284256|gb|ABP51838.1| conserved hypothetical protein [Pyrobaculum arsenaticum DSM 13514]
          Length = 287

 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 7/26 (26%), Positives = 15/26 (57%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPP 48
           ++ G+ +S++  +   S D +  DPP
Sbjct: 189 LVLGDCLSLVSAVRDASFDFVIHDPP 214


>gi|75910222|ref|YP_324518.1| hypothetical protein Ava_4018 [Anabaena variabilis ATCC 29413]
 gi|75703947|gb|ABA23623.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413]
          Length = 184

 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
           N+  +W  ++++G+ +  L+ L  +  D I+ DPPY   L
Sbjct: 87  NNEQKW--RVLRGDVLQQLKNLSGQQFDRIYFDPPYASGL 124


>gi|23098905|ref|NP_692371.1| hypothetical protein OB1450 [Oceanobacillus iheyensis HTE831]
 gi|22777132|dbj|BAC13406.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 188

 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 49/152 (32%), Gaps = 6/152 (3%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           +I       +L+   G    PT          ++       I+LD F GSG  G  A   
Sbjct: 3   VIAGIHKGRQLKPVPGHHTRPTTDKVKEAIFQVIGPFFSDGIVLDLFAGSGGLGIEALSR 62

Query: 245 RRS-FIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLI---Q 300
             +  I ++ +Q  I    + +  ++     E+      R     A   L    ++    
Sbjct: 63  GMNQAIFVDKQQKAIHTIRENLKQLKLDDKAEVFRTDAFRAIKAAAKRELRFNLVLLDPP 122

Query: 301 PGQI--LTNAQGNISATVCADGTLISGTELGS 330
            G++  L      +   + AD  ++      S
Sbjct: 123 YGKVDYLELLNELVENRLLADNAIVYCEHEAS 154


>gi|312881608|ref|ZP_07741386.1| 23S rRNA m(2)G2445 methyltransferase [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309370671|gb|EFP98145.1| 23S rRNA m(2)G2445 methyltransferase [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 708

 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 41/126 (32%), Gaps = 24/126 (19%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
           + + +  LE    K  DLIF DPP         +     +  +     D           
Sbjct: 600 QADCLQWLEHC-DKQFDLIFIDPP--------TFSNSKRMEQSFDVQRDHI--------- 641

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF-WILNDIVWRKSNPMPNFRGR 143
               +   +R+LK  G +    +          +++L    ++ + +  K+ PM   R +
Sbjct: 642 --QLMKNLKRLLKARGKIVFSNNKRQ---FKMDVESLGELSLVAENISHKTLPMDFARNK 696

Query: 144 RFQNAH 149
              N  
Sbjct: 697 HIHNCW 702


>gi|254295023|ref|YP_003061046.1| peptidase S10 serine carboxypeptidase [Hirschia baltica ATCC 49814]
 gi|254043554|gb|ACT60349.1| peptidase S10 serine carboxypeptidase [Hirschia baltica ATCC 49814]
          Length = 459

 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 10/81 (12%)

Query: 38  KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK 97
            + DL+F DP     ++    R +    +A     D  +  EA   F R W+   +R   
Sbjct: 97  DTADLVFIDP-----IDTGFSRSNSD--EAADKYLDINNDAEAVALFIRTWIKEYKR--- 146

Query: 98  PNGTLWVIGSYHNIFRIGTML 118
            +  +++ G  +  FR+G +L
Sbjct: 147 EDAPIFITGQSYGGFRLGKLL 167


>gi|304410438|ref|ZP_07392056.1| peptidase S10 serine carboxypeptidase [Shewanella baltica OS183]
 gi|307304530|ref|ZP_07584280.1| peptidase S10 serine carboxypeptidase [Shewanella baltica BA175]
 gi|304350922|gb|EFM15322.1| peptidase S10 serine carboxypeptidase [Shewanella baltica OS183]
 gi|306911932|gb|EFN42356.1| peptidase S10 serine carboxypeptidase [Shewanella baltica BA175]
          Length = 513

 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 42/134 (31%), Gaps = 8/134 (5%)

Query: 34  KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
            +  +S DL+F DP     +     R       A  D W      ++   F R WL+  +
Sbjct: 150 SMLDES-DLVFIDP-----VGTGFSRALGDKKGA--DFWGVKEDAQSIAEFIRRWLIEHK 201

Query: 94  RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           R   P               +   LQ     I  + +   S+ +     R     ++  I
Sbjct: 202 RWNSPKYLAGESYGTTRAAALVNELQGGWTDISVNGIMLISSILDFSHARYQPGNNQPYI 261

Query: 154 WASPSPKAKGYTFN 167
              P+  A  +  N
Sbjct: 262 GFLPTMAATAFYHN 275


>gi|217978329|ref|YP_002362476.1| Adenine-specific DNA methylase-like protein [Methylocella
           silvestris BL2]
 gi|217503705|gb|ACK51114.1| Adenine-specific DNA methylase-like protein [Methylocella
           silvestris BL2]
          Length = 393

 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 23/32 (71%), Gaps = 2/32 (6%)

Query: 20  KDKIIKGNSISVLEKLPAKSV--DLIFADPPY 49
           K+++ + ++I++LE+L  +     +I+ADPPY
Sbjct: 239 KNRVYRRDAIALLEELTGECARPRVIYADPPY 270


>gi|297380216|gb|ADI35103.1| Uncharacterized methyltransferase in lpd-3 5'region [Helicobacter
           pylori v225d]
          Length = 389

 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 51/307 (16%), Positives = 98/307 (31%), Gaps = 29/307 (9%)

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM----LQNLNFWILNDIVWRKSNPMPNF 140
            + W     +V+  + +++  G +   F +         ++   +   I     + + + 
Sbjct: 11  FKQWKNGDYQVVFWDNSVYRNGEHSPKFTLKIHRPLKFSDIKKDMSLTIAEAYMDGVIDI 70

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS---------DWLIPICSG 191
            G   +  H   +  +     K                  +           WL    S 
Sbjct: 71  EGSMDEVMHSLYLQTNYEHLHKHDNAKAIQKPIRESSNISKHYDLGNDFYSIWLDETLSY 130

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG-TSGAVAKKLRRSFIG 250
           S     KD + LH  Q  + L   +     KPG+ +LD   G G  S   A++     +G
Sbjct: 131 SCAYFKKDDDTLHAAQL-QKLDHTLKKLHLKPGEKLLDIGCGWGYLSIKAAQEYGAQVMG 189

Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV-AFNLLVERGLI-QPGQILTNA 308
           I +  +    A KR+  +     + + +L  +  + R+  F+ +V  G+    G+     
Sbjct: 190 ITISSEQYKQANKRVQELGLEDKVTIKLLNYQDLDGRLYRFDKVVSVGMFEHVGKDNLPF 249

Query: 309 QGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
                  V   G +        +H +     G    N W   Y    G L S   LR ++
Sbjct: 250 YFKKVKEVLKRGGMFL------LHSILCCFEGKT--NAWVDKYIFPGGYLPS---LREVM 298

Query: 369 RKELYNC 375
              +  C
Sbjct: 299 -SVMSEC 304


>gi|315648197|ref|ZP_07901298.1| methyltransferase [Paenibacillus vortex V453]
 gi|315276843|gb|EFU40186.1| methyltransferase [Paenibacillus vortex V453]
          Length = 205

 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSV--DLIFADPPY 49
           E + +I + ++   L+ L  +S   DL+F DPPY
Sbjct: 94  EERAEIYRNDAARALKALEKRSFKFDLVFLDPPY 127


>gi|303328440|ref|ZP_07358877.1| RNA methyltransferase, RsmD family [Desulfovibrio sp. 3_1_syn3]
 gi|302861434|gb|EFL84371.1| RNA methyltransferase, RsmD family [Desulfovibrio sp. 3_1_syn3]
          Length = 183

 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPY 49
           E + ++ K + +  L++ P +  DL+F DPPY
Sbjct: 93  EGRARLSKEDVLRFLKRQPPEGFDLVFMDPPY 124


>gi|255292163|dbj|BAH89289.1| conserved hypothetical protein [uncultured bacterium]
 gi|255293150|dbj|BAH90242.1| conserved hypothetical protein [uncultured bacterium]
          Length = 934

 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 5/79 (6%)

Query: 209 PEALLSR----ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            E +L R    I  S       + DPF G G+    A++L     G ++    + I    
Sbjct: 96  NEEVLERARAEIRRSCGGELPPVYDPFSGGGSIPLEAQRLGLPAYGSDLNPVAVMIGKA- 154

Query: 265 IASVQPLGNIELTVLTGKR 283
           +  + P       +  G +
Sbjct: 155 MIEIPPKFKDMSPIHPGIK 173


>gi|194016870|ref|ZP_03055483.1| YpiP [Bacillus pumilus ATCC 7061]
 gi|194011476|gb|EDW21045.1| YpiP [Bacillus pumilus ATCC 7061]
          Length = 262

 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADP 47
           +I G+SI  L+K P  S D+++ DP
Sbjct: 158 VISGDSIEQLKKYPDCSFDIVYFDP 182


>gi|163955070|ref|YP_001648174.1| hypothetical protein OsV5_097f [Ostreococcus virus OsV5]
 gi|163638519|gb|ABY27878.1| hypothetical protein OsV5_097f [Ostreococcus virus OsV5]
          Length = 341

 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
           ++   L  LP   VDLI+ DPPYN    G  Y
Sbjct: 201 DACDFLRDLP--QVDLIYLDPPYNQHPYGSNY 230


>gi|189426550|ref|YP_001953727.1| SAM-dependent methyltransferase-like protein [Geobacter lovleyi SZ]
 gi|189422809|gb|ACD97207.1| SAM-dependent methyltransferase-like protein [Geobacter lovleyi SZ]
          Length = 398

 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKL--PAKSVDLIFADPP-YNLQLNGQLYRPDHS 63
           N + N +   K + + G+ ++ L +L    +  D+I  DPP ++    G+      +
Sbjct: 264 NFSANRLNPKKHRFLVGDCMTRLAELATANEKFDIILMDPPSFSTTTKGRFTTRGGT 320


>gi|328473648|gb|EGF44483.1| 23S rRNA m(2)G2445 methyltransferase [Vibrio parahaemolyticus
           10329]
          Length = 707

 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 41/130 (31%), Gaps = 22/130 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + +  + + +  LE    +  DLIF DPP         +     +  +     D      
Sbjct: 594 QHRFEQADCLQWLENAKGEY-DLIFIDPP--------TFSNSKRMETSFDVQRDHIK--- 641

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                    +   +R+L+  GT+    +  +       L  L     N  +  ++ P+  
Sbjct: 642 --------LMTNLKRLLRAGGTIVFSNNKRHFKMDEEGLAELGLKAQN--ISSQTLPLDF 691

Query: 140 FRGRRFQNAH 149
            R +   N  
Sbjct: 692 SRNKHIHNCW 701


>gi|327311931|ref|YP_004338828.1| putative RNA methylase [Thermoproteus uzoniensis 768-20]
 gi|326948410|gb|AEA13516.1| putative RNA methylase [Thermoproteus uzoniensis 768-20]
          Length = 226

 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 206 TQKPEALLSRIL--VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           T   +A  +R+L  ++ ++    +L+PF GSG   A A++     +G+++  D +  A
Sbjct: 71  TVTMDAFTARLLANLAMSRKLSKVLEPFIGSGAVAAEAERYGAYVVGVDIDADMLRRA 128


>gi|260903188|ref|ZP_05911583.1| RNA methylase family protein [Vibrio parahaemolyticus AQ4037]
 gi|308110298|gb|EFO47838.1| RNA methylase family protein [Vibrio parahaemolyticus AQ4037]
          Length = 707

 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 41/130 (31%), Gaps = 22/130 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + +  + + +  LE    +  DLIF DPP         +     +  +     D      
Sbjct: 594 QHRFEQADCLQWLENAKGEY-DLIFIDPP--------TFSNSKRMETSFDVQRDHIK--- 641

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                    +   +R+L+  GT+    +  +       L  L     N  +  ++ P+  
Sbjct: 642 --------LMTNLKRLLRAGGTIVFSNNKRHFKMDEEGLAELGLKAQN--ISSQTLPLDF 691

Query: 140 FRGRRFQNAH 149
            R +   N  
Sbjct: 692 SRNKHIHNCW 701


>gi|242063418|ref|XP_002452998.1| hypothetical protein SORBIDRAFT_04g036370 [Sorghum bicolor]
 gi|241932829|gb|EES05974.1| hypothetical protein SORBIDRAFT_04g036370 [Sorghum bicolor]
          Length = 293

 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 214 SRILVSSTKPGDII----LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            R L     P D +    LD   GSG SG    +    +IG ++ +  +D+A +R
Sbjct: 37  ERALELLALPNDGVPKMLLDIGCGSGLSGETLTEHGHHWIGYDISKSMLDVALER 91


>gi|168207690|ref|ZP_02633695.1| modification methylase StsI [Clostridium perfringens E str.
           JGS1987]
 gi|170660986|gb|EDT13669.1| modification methylase StsI [Clostridium perfringens E str.
           JGS1987]
          Length = 405

 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 12  NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
           N ++I +  ++I   ++  ++ ++     DL++ D PYN +  G  Y
Sbjct: 245 NVSTINDKDNRIYNMDANKLVREIE---ADLVYIDTPYNSRQYGDTY 288


>gi|152999564|ref|YP_001365245.1| peptidase S10 serine carboxypeptidase [Shewanella baltica OS185]
 gi|151364182|gb|ABS07182.1| peptidase S10 serine carboxypeptidase [Shewanella baltica OS185]
          Length = 513

 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 42/134 (31%), Gaps = 8/134 (5%)

Query: 34  KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
            +  +S DL+F DP     +     R       A  D W      ++   F R WL+  +
Sbjct: 150 SMLDES-DLVFIDP-----VGTGFSRALGDKKGA--DFWGVKEDAQSIAEFIRRWLIEHK 201

Query: 94  RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           R   P               +   LQ     I  + +   S+ +     R     ++  I
Sbjct: 202 RWNSPKYLAGESYGTTRAAALVNELQGGWTDISVNGIMLISSILDFSHARYQPGNNQPYI 261

Query: 154 WASPSPKAKGYTFN 167
              P+  A  +  N
Sbjct: 262 GFLPTMAATAFYHN 275


>gi|28898371|ref|NP_797976.1| 23S rRNA m(2)G2445 methyltransferase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260365355|ref|ZP_05777900.1| RNA methylase family protein [Vibrio parahaemolyticus K5030]
 gi|260878700|ref|ZP_05891055.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034]
 gi|260897980|ref|ZP_05906476.1| conserved hypothetical protein [Vibrio parahaemolyticus Peru-466]
 gi|81839810|sp|Q87PC0|RLML_VIBPA RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|28806588|dbj|BAC59860.1| putative N6-adenine-specific DNA methylase [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308086092|gb|EFO35787.1| conserved hypothetical protein [Vibrio parahaemolyticus Peru-466]
 gi|308091264|gb|EFO40959.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034]
 gi|308112673|gb|EFO50213.1| RNA methylase family protein [Vibrio parahaemolyticus K5030]
          Length = 707

 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 41/130 (31%), Gaps = 22/130 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + +  + + +  LE    +  DLIF DPP         +     +  +     D      
Sbjct: 594 QHRFEQADCLQWLENAKGEY-DLIFIDPP--------TFSNSKRMETSFDVQRDHIK--- 641

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                    +   +R+L+  GT+    +  +       L  L     N  +  ++ P+  
Sbjct: 642 --------LMTNLKRLLRAGGTIVFSNNKRHFKMDEEGLAELGLKAQN--ISSQTLPLDF 691

Query: 140 FRGRRFQNAH 149
            R +   N  
Sbjct: 692 SRNKHIHNCW 701


>gi|241663437|ref|YP_002981797.1| 3-hydroxy-acyl-CoA dehydrogenase [Ralstonia pickettii 12D]
 gi|240865464|gb|ACS63125.1| 3-hydroxybutyryl-CoA dehydrogenase [Ralstonia pickettii 12D]
          Length = 502

 Score = 38.4 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 47/146 (32%), Gaps = 13/146 (8%)

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV------QPLGNIELTVLTGKRTE 285
            G G +   A +        +     ++ A   +A        +     +    T  R  
Sbjct: 12  MGRGIAQIAA-QAGLRVKLFDANPQAVEAARTALADTLAKLASKGKLTADDADATVARLV 70

Query: 286 PRVAFNLL-----VERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSG 340
           P  A   L     V   +++   +  +    +   V AD  L S T   SI  + A    
Sbjct: 71  PAGALTDLADCDLVVEAIVEKLDVKRDLFRQLEDIVRADAILASNTSSLSITAIAATCKH 130

Query: 341 SETCNGWNFWY-FEKLGELHSINTLR 365
            E   G++F+     +  +  I+ LR
Sbjct: 131 PERVAGFHFFNPVPLMKVVEVIDGLR 156


>gi|254421609|ref|ZP_05035327.1| putative methyltransferase [Synechococcus sp. PCC 7335]
 gi|196189098|gb|EDX84062.1| putative methyltransferase [Synechococcus sp. PCC 7335]
          Length = 187

 Score = 38.4 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPY 49
           K +IIKG+ +  ++KL     DLI+ DPPY
Sbjct: 91  KQQIIKGDVVRQIKKL-TGKFDLIYFDPPY 119


>gi|195624764|gb|ACG34212.1| methyltransferase WBSCR22 [Zea mays]
          Length = 293

 Score = 38.4 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 214 SRILVSSTKPGDII----LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            R L     P D +    LD   GSG SG    +    +IG ++ +  +D+A +R
Sbjct: 37  ERALELLALPNDGVPKLLLDIGCGSGLSGETLTEHGHHWIGYDISKSMLDVALER 91


>gi|206901370|ref|YP_002250424.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dictyoglomus
           thermophilum H-6-12]
 gi|206740473|gb|ACI19531.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dictyoglomus
           thermophilum H-6-12]
          Length = 448

 Score = 38.4 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 10/103 (9%)

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK--RIAS 267
           E L ++ L   +    ++ D + G GT      K      GIE+++  I+ A K  R+  
Sbjct: 288 EKLYNKALEYLSPNSRLVFDAYCGIGTISLFLSKKAEKVYGIEVERTAIEDAWKNARLNK 347

Query: 268 VQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQG 310
           V+   N+E      +   PR     L+E G I    +L   + 
Sbjct: 348 VK---NVEFIWGRSEEVIPR-----LIEDGKIPDAVVLDPPRK 382


>gi|187250959|ref|YP_001875441.1| methyltransferase domain-containing protein [Elusimicrobium minutum
           Pei191]
 gi|186971119|gb|ACC98104.1| Methyltransferase domain [Elusimicrobium minutum Pei191]
          Length = 255

 Score = 38.4 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATK 263
           P A ++++L         ILD   G G +   +AK+L  +  GI++   +ID A K
Sbjct: 39  PCADIAQLLKDRLPGEAKILDLACGKGAAAVKIAKELGLNVKGIDIMPQFIDYAKK 94


>gi|312792928|ref|YP_004025851.1| hypothetical protein Calkr_0709 [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180068|gb|ADQ40238.1| protein of unknown function DUF1156 [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 925

 Score = 38.4 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 47/167 (28%), Gaps = 34/167 (20%)

Query: 36  PAKSVDLIFADPPY--NLQLNGQLYRPDHSLVDAVTDSW-DKFSSF-------------- 78
           P    D +  DPPY  N+  +         L   V D + D F++               
Sbjct: 516 PDNYFDAVITDPPYYDNVPYSYLSDFFYVWLKRTVGDLYPDLFATPLTPKAEEIVAYSHE 575

Query: 79  --------EAYDAFTRAWLLACRRVLKPNG---TLWVIGSYHNIFRIGTMLQNLNFWILN 127
                   + ++           RVLK +G    ++   S      I   L +   ++  
Sbjct: 576 VGGLEGGKKFFEEMISKAFREIYRVLKDDGIAVIVFAHKSTTAWETIINALLDSGLYLT- 634

Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
                 S P+      R +      + +S     +  T N  A    
Sbjct: 635 -----ASWPIHTEMKARLRAKESAALASSIYMVCRKRTTNETAFYTE 676



 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 6/128 (4%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
           IW S  P A   +  Y AL    ++ + R      I   ++   + + + +   +     
Sbjct: 42  IWWSRKPLASSRSTIYAALIPEPKNEEERLKEEEKIAKMAKWENSLNEDIIQKAR----- 96

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
             +IL ++      ILDPF G G+    A +L       ++    + I    +   Q  G
Sbjct: 97  -EKILATNNNTPPKILDPFAGGGSIPLEALRLGCEVYAGDLNPVAVLIEKATLEFPQKYG 155

Query: 273 NIELTVLT 280
                +  
Sbjct: 156 QFTRQIEK 163


>gi|307189935|gb|EFN74171.1| Uncharacterized methyltransferase WBSCR22 [Camponotus floridanus]
          Length = 275

 Score = 38.4 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 210 EALLSRILVSSTKPGD---IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
             +  R +     P D   ++LD   GSG SG+V +     +IG+++    +++A  R
Sbjct: 34  VQMCERAIELLLLPEDKSCLLLDIGCGSGLSGSVLEDQGHLWIGVDISSSMLEVANDR 91


>gi|296103042|ref|YP_003613188.1| 23S rRNA m(2)G2445 methyltransferase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295057501|gb|ADF62239.1| 23S rRNA m(2)G2445 methyltransferase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 702

 Score = 38.4 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 36/115 (31%), Gaps = 20/115 (17%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++++ + +  L     +  DLIF DPP         +     + D+  
Sbjct: 580 NLRLNGLTGRQHRLMQADVLGWLRD-TDEQFDLIFIDPP--------TFSNSKRMEDSFD 630

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
              D               +   +R+L+  GT+    +          L  L   
Sbjct: 631 VQRDHLR-----------LMTDLKRLLRKGGTIMFSNNKRGFRMDHDGLAALGLK 674


>gi|303273242|ref|XP_003055982.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462066|gb|EEH59358.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 299

 Score = 38.4 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 210 EALLSRILVSSTKPGDII----LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           E L  R +     P D +    LD   GSG SG     L   +IG ++  + +++A +R
Sbjct: 33  ERLTERAVELLNIPDDGVPRLLLDVGCGSGLSGERLTSLGHEWIGTDISMNMLEVAQER 91


>gi|221632372|ref|YP_002521593.1| 50S ribosomal protein L11 methyltransferase [Thermomicrobium roseum
           DSM 5159]
 gi|221155577|gb|ACM04704.1| ribosomal protein L11 methyltransferase [Thermomicrobium roseum DSM
           5159]
          Length = 306

 Score = 38.4 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 45/119 (37%), Gaps = 13/119 (10%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G  LHPT +   L    L     PG  +LD   GSG     A  L  RS    E+     
Sbjct: 145 GTGLHPTTQHCLL---WLERLVTPGMSVLDAGAGSGILSIAALALGARSVTAWEIDPVAG 201

Query: 259 DIATKRIA-------SVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQG 310
           ++  + +        +   +G++   +   +  +  VA   +V R LI+ G  L  A  
Sbjct: 202 EVLRENLERNGVADRATVRIGDVTEDLTDREAYDLVVA--NIVARVLIEAGPRLVRAAR 258


>gi|220935907|ref|YP_002514806.1| putative RNA methylase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997217|gb|ACL73819.1| putative RNA methylase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 426

 Score = 38.4 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 7/48 (14%)

Query: 5   NSLAINENQNSIFEWKDKI--IKGNSISVLEKLPAKS--VDLIFADPP 48
            S+A N  +N +    D++  +KG++  VL++L       D++  DPP
Sbjct: 260 ESMAANAAENGVG---DRVSGVKGDAFEVLKQLREDQARFDVVITDPP 304


>gi|220909310|ref|YP_002484621.1| methyltransferase [Cyanothece sp. PCC 7425]
 gi|219865921|gb|ACL46260.1| methyltransferase [Cyanothece sp. PCC 7425]
          Length = 191

 Score = 38.4 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 43/124 (34%), Gaps = 10/124 (8%)

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-S 247
            SG+  L+   G++  PT          +          LD   GSG  GA A       
Sbjct: 5   ISGNRPLKTLPGQETRPTASRVREALFNIWQGKIEDCRWLDLCAGSGAMGAEALCRGAVR 64

Query: 248 FIGIEMKQDYIDIAT---KRIASVQPLGNI------ELTVLTGKRTEPRVAFNLLVERGL 298
            +GIE      +I     +R+A  +    I      +   L   +   R+ F+     GL
Sbjct: 65  VVGIEKSGRACEIIRQNWQRVAQPEQQFQILRGDILQQLPLLVGQQFDRIYFDPPYASGL 124

Query: 299 IQPG 302
            +PG
Sbjct: 125 YEPG 128


>gi|170092329|ref|XP_001877386.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164647245|gb|EDR11489.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 409

 Score = 38.4 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 4/70 (5%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK--FSSFEAYD--AFTRAWLLACRRV 95
            D I  DPPY ++   +       L     D  D+        Y+        ++  R +
Sbjct: 291 FDAIVTDPPYGVRAGAKRLGRKKELTPTQRDLDDQPYIPPTRPYELSHLAADLVILARYL 350

Query: 96  LKPNGTLWVI 105
           LKP G L   
Sbjct: 351 LKPGGRLVFF 360


>gi|289549358|ref|YP_003474346.1| hypothetical protein Thal_1591 [Thermocrinis albus DSM 14484]
 gi|289182975|gb|ADC90219.1| protein of unknown function DUF1156 [Thermocrinis albus DSM 14484]
          Length = 916

 Score = 38.4 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 28/136 (20%)

Query: 36  PAKSVDLIFADPPY--NLQLN--------------GQLY--------RPDHSLVDAVTDS 71
           P    D +F DPPY  N+  +              G LY         P    + A +  
Sbjct: 526 PDNYFDAVFTDPPYYDNVPYSYLSDFFYVWLKRSIGDLYPELFITPLTPKSKEIVAYSHL 585

Query: 72  WDKFSSF-EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
              + +  + ++   +       RVLKP G   ++ ++ +     T+   +N  + +D+V
Sbjct: 586 PGGYEAGKQFFENMLKKAFKEISRVLKPEGIAVIVYTHKSTSGWETL---INSLLDSDLV 642

Query: 131 WRKSNPMPNFRGRRFQ 146
              S P+      R +
Sbjct: 643 ITASWPIDTEMKSRLR 658


>gi|168184388|ref|ZP_02619052.1| putative DNA modification methylase [Clostridium botulinum Bf]
 gi|182672482|gb|EDT84443.1| putative DNA modification methylase [Clostridium botulinum Bf]
          Length = 355

 Score = 38.4 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY--IDIATKRIAS 267
           L+  IL+          DP  GSGTS  +AK L    +G+++   +   +I       
Sbjct: 84  LIKDILLHYNIKEF--CDPMLGSGTSLDLAKDLNIKCLGMDLNPKFGGFNIIKDEFPK 139


>gi|154312836|ref|XP_001555745.1| predicted protein [Botryotinia fuckeliana B05.10]
 gi|150849821|gb|EDN25014.1| predicted protein [Botryotinia fuckeliana B05.10]
          Length = 233

 Score = 38.4 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 33/104 (31%), Gaps = 11/104 (10%)

Query: 222 KPGDIILDPFFGSGT---SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278
            P   +LD   GSGT   +        R   GI++    I ++ K +    P G  E   
Sbjct: 45  PPNASVLD--IGSGTGIPTSLAVVNSGRKLHGIDIAPSMIQLSRKNV----PGGTFEQVS 98

Query: 279 LTGKRTEPRVAF-NLLVERGLIQPG-QILTNAQGNISATVCADG 320
           +     E    F    V   +       +  A G     V  +G
Sbjct: 99  MLDYTPEDGQKFDGAFVVLSMFHMKRDEMIKAIGKWKDWVKGNG 142


>gi|71278744|ref|YP_269961.1| 23S rRNA m(2)G2445 methyltransferase [Colwellia psychrerythraea
           34H]
 gi|123631813|sp|Q47Z09|RLML_COLP3 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|71144484|gb|AAZ24957.1| putative RNA methylase, family UPF0020 [Colwellia psychrerythraea
           34H]
          Length = 715

 Score = 38.4 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 34/109 (31%), Gaps = 20/109 (18%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N +   K + I+ + +  L+K      D+IF DPP         +     + D+     D
Sbjct: 595 NKLNGHKYQFIQADCLDWLKK-NVNKFDVIFIDPP--------TFSNSKRMEDSFDVQRD 645

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                  +       L +  R     G ++   +  N       L  L 
Sbjct: 646 -------HVDLITDALKSLNR----GGEIFFTNNKRNFKIDFEALDELG 683


>gi|323143727|ref|ZP_08078395.1| ribosomal protein L11 methyltransferase [Succinatimonas hippei YIT
           12066]
 gi|322416440|gb|EFY07106.1| ribosomal protein L11 methyltransferase [Succinatimonas hippei YIT
           12066]
          Length = 293

 Score = 38.4 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT    +L    L         +LD   GSG     A KL  +   G+++    +
Sbjct: 137 GTGTHPTT---SLCLEWLDGLNLLDKTVLDYGCGSGILAIAALKLGAKEAYGVDIDPQAL 193

Query: 259 DIATK 263
           + + +
Sbjct: 194 EASEE 198


>gi|308062317|gb|ADO04205.1| cyclopropane fatty acid synthase [Helicobacter pylori Cuz20]
          Length = 389

 Score = 38.4 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 51/307 (16%), Positives = 98/307 (31%), Gaps = 29/307 (9%)

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM----LQNLNFWILNDIVWRKSNPMPNF 140
            + W     +V+  + +++  G +   F +         ++   +   I     + + + 
Sbjct: 11  FKQWKNGDYQVVFWDNSVYRNGEHSPKFTLKIHRPLKFSDIKKDMSLTIAEAYMDGVIDI 70

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS---------DWLIPICSG 191
            G   +  H   +  +     K                  +           WL    S 
Sbjct: 71  EGSMDEVMHSLYLQTNYEHLHKHDNAKAIQKPIRESSNISKHYDLGNDFYSIWLDETLSY 130

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG-TSGAVAKKLRRSFIG 250
           S     KD + LH  Q  + L   +     KPG+ +LD   G G  S   A++     +G
Sbjct: 131 SCAYFKKDDDTLHTAQL-QKLDHTLKKLHLKPGEKLLDIGCGWGYLSIKAAQEYGAQVMG 189

Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV-AFNLLVERGLI-QPGQILTNA 308
           I +  +    A KR+  +     + + +L  +  + R+  F+ +V  G+    G+     
Sbjct: 190 ITISSEQYKQANKRVQELGLEDKVTIKLLNYQDLDGRLYRFDKVVSVGMFEHVGKDNLPF 249

Query: 309 QGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
                  V   G +        +H +     G    N W   Y    G L S   LR ++
Sbjct: 250 YFKKVKEVLKRGGMFL------LHSILCCFEGKT--NAWVDKYIFPGGYLPS---LREVM 298

Query: 369 RKELYNC 375
              +  C
Sbjct: 299 -SVMSEC 304


>gi|282895581|ref|ZP_06303715.1| Putative methyltransferase [Raphidiopsis brookii D9]
 gi|281199421|gb|EFA74285.1| Putative methyltransferase [Raphidiopsis brookii D9]
          Length = 175

 Score = 38.4 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPY 49
          I++G+ I  L+KL  ++ D I+ DPPY
Sbjct: 69 ILRGDVIQQLKKLSGQTFDRIYFDPPY 95


>gi|269962298|ref|ZP_06176649.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832958|gb|EEZ87066.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 707

 Score = 38.4 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 43/130 (33%), Gaps = 22/130 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + +  + + +  LE   ++  DLIF DPP         +     +  +     D      
Sbjct: 594 QHRFEQADCLQWLENAKSEY-DLIFIDPP--------TFSNSKRMETSFDVQRDHIK--- 641

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                    +   +R+L+  GT+    +  +       L  L     N  +  ++ P+  
Sbjct: 642 --------LMTNLKRLLRAGGTIVFSNNKRHFKMDEAGLAELGLKAQN--ISSQTLPLDF 691

Query: 140 FRGRRFQNAH 149
            R ++  N  
Sbjct: 692 SRNKQIHNCW 701


>gi|83409928|emb|CAI64349.1| putative RNA methylase [uncultured archaeon]
          Length = 359

 Score = 38.4 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 21/71 (29%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           L    +D +  DPPY             +L+ A            + D   +  L    R
Sbjct: 271 LKDSCIDCVVTDPPYG----------RSALIQA-----------RSLDILMKHSLKEIFR 309

Query: 95  VLKPNGTLWVI 105
           VL+P G   V+
Sbjct: 310 VLRPGGRAVVV 320


>gi|297157198|gb|ADI06910.1| putative methyltransferase [Streptomyces bingchenggensis BCW-1]
          Length = 281

 Score = 38.4 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY 49
           +  G++++ L +L    VDL+ ++PPY
Sbjct: 162 LHHGDALTALPEL-DGQVDLVISNPPY 187


>gi|227501792|ref|ZP_03931841.1| possible methyltransferase [Corynebacterium accolens ATCC 49725]
 gi|227077817|gb|EEI15780.1| possible methyltransferase [Corynebacterium accolens ATCC 49725]
          Length = 197

 Score = 38.4 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 37/126 (29%), Gaps = 22/126 (17%)

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYIDIATKRIASV 268
           E L S +      PG  +LD F GSG  G  A        + +E     + I    I  V
Sbjct: 30  EGLFSSLNARWGFPGSTVLDLFAGSGALGLEALSRGADEAVLVESNPAAVSIIKHNIGVV 89

Query: 269 QPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTEL 328
           +           G R E R            +    L +A       V AD         
Sbjct: 90  KH---------PGARVEER------------KVSTYLASAPRGYFDLVLADPPYAFDDVP 128

Query: 329 GSIHRV 334
           G I  V
Sbjct: 129 GLIAAV 134


>gi|217071984|gb|ACJ84352.1| unknown [Medicago truncatula]
          Length = 248

 Score = 38.4 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 207 QKPEALLSRILVSSTKPGDII----LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           Q   ++  R L     P D +    LD   GSG SG V  +    ++G+++    +DIA 
Sbjct: 31  QIQTSMTERALELLNLPKDGVPKLLLDIGCGSGLSGEVITESGHHWVGLDIAPSMLDIAL 90

Query: 263 KR 264
            R
Sbjct: 91  DR 92


>gi|212724080|ref|NP_001132779.1| hypothetical protein LOC100194268 [Zea mays]
 gi|194695378|gb|ACF81773.1| unknown [Zea mays]
          Length = 293

 Score = 38.4 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 214 SRILVSSTKPGDII----LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            R L     P D +    LD   GSG SG    +    +IG ++ +  +D+A +R
Sbjct: 37  ERALELLALPNDGVPKLLLDIGCGSGLSGETLTEHGHHWIGYDISKSMLDVALER 91


>gi|160874183|ref|YP_001553499.1| peptidase S10 serine carboxypeptidase [Shewanella baltica OS195]
 gi|160859705|gb|ABX48239.1| peptidase S10 serine carboxypeptidase [Shewanella baltica OS195]
 gi|315266415|gb|ADT93268.1| peptidase S10 serine carboxypeptidase [Shewanella baltica OS678]
          Length = 513

 Score = 38.4 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 42/134 (31%), Gaps = 8/134 (5%)

Query: 34  KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
            +  +S DL+F DP     +     R       A  D W      ++   F R WL+  +
Sbjct: 150 SMLDES-DLVFIDP-----VGTGFSRALGDKKGA--DFWGVKEDAQSIAEFIRRWLIEHK 201

Query: 94  RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           R   P               +   LQ     I  + +   S+ +     R     ++  I
Sbjct: 202 RWNSPKYLAGESYGTTRAAALVNELQGGWTDISVNGIMLISSILDFSHARYQPGNNQPYI 261

Query: 154 WASPSPKAKGYTFN 167
              P+  A  +  N
Sbjct: 262 GFLPTMAATAFYHN 275


>gi|17228862|ref|NP_485410.1| hypothetical protein all1367 [Nostoc sp. PCC 7120]
 gi|17130714|dbj|BAB73324.1| all1367 [Nostoc sp. PCC 7120]
          Length = 184

 Score = 38.4 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
           N+  +W  +I++G+ +  L+ L  +  D I+ DPPY   L
Sbjct: 87  NNEQQW--RILRGDVVQQLKNLSGQQFDRIYFDPPYASGL 124


>gi|262371991|ref|ZP_06065270.1| methyltransferase [Acinetobacter junii SH205]
 gi|262312016|gb|EEY93101.1| methyltransferase [Acinetobacter junii SH205]
          Length = 224

 Score = 38.4 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 10/90 (11%)

Query: 184 WLIPICSGSERL--------RNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGS 234
           WLIP    ++RL         N+    +       A+   +L       D ++LD   GS
Sbjct: 40  WLIPPVFPTDRLDDEVIRRIWNETPYWIFCWASGLAMAQWLLAEPHHVKDKVVLDFGAGS 99

Query: 235 GTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           G     AK    +  I  ++ Q  ++   +
Sbjct: 100 GVVAIAAKMAGAKRVICCDIDQVSLESCRE 129


>gi|223940477|ref|ZP_03632327.1| pseudouridine synthase [bacterium Ellin514]
 gi|223890839|gb|EEF57350.1| pseudouridine synthase [bacterium Ellin514]
          Length = 536

 Score = 38.4 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 14  NSIFEWKDKIIKGNSISVLEKL--PAKSVDLIFADPP 48
           N I   +   I G++   +++L    ++ DLI  DPP
Sbjct: 407 NQIDPTQHDFIYGDTFDWMKRLGKKGRAYDLIVLDPP 443


>gi|157363618|ref|YP_001470385.1| ribosomal L11 methyltransferase [Thermotoga lettingae TMO]
 gi|157314222|gb|ABV33321.1| ribosomal L11 methyltransferase [Thermotoga lettingae TMO]
          Length = 268

 Score = 38.4 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 39/121 (32%), Gaps = 12/121 (9%)

Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG--------SERLRNKDGEK 202
           T + A    K   Y+ ++    A      +   W+ P              R     G  
Sbjct: 55  TRLQAKIFKKNITYSKDWFRYLAMKPFRILNKVWIDPTGKFQVDDGIVIKMRPSAAFGTG 114

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIA 261
            HPT     L +  L    K    +LD   G+     +AK+L  R    ++     +++A
Sbjct: 115 DHPTTM---LCAEFLERYLKNSCSVLDVGCGTAVLSIIAKRLGARKVTALDNDPVAVEVA 171

Query: 262 T 262
            
Sbjct: 172 R 172


>gi|158314367|ref|YP_001506875.1| hypothetical protein Franean1_2539 [Frankia sp. EAN1pec]
 gi|158109772|gb|ABW11969.1| conserved hypothetical protein [Frankia sp. EAN1pec]
          Length = 270

 Score = 38.4 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 21/44 (47%)

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
            ++PGD + DP  G GT  A A   RR  +GI    D  + A  
Sbjct: 56  YSQPGDTVCDPDCGPGTVVAEAVHARRHAVGITTDPDRWETARA 99


>gi|325294970|ref|YP_004281484.1| methyltransferase [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065418|gb|ADY73425.1| methyltransferase [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 193

 Score = 38.4 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 10/94 (10%)

Query: 5   NSLAINENQNSIFEWKDKIIKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPDH 62
           N +  N  +  +   K +II  + ++ L+KL    +  D I+ADPPY     G   R  +
Sbjct: 82  NLIEENLRKLGVERGKYEIICDDYVNALKKLAKRGEKFDFIYADPPY---EKGFYTRIVN 138

Query: 63  SLVDAVTDSWDKFSSFEA-----YDAFTRAWLLA 91
            + +      D     E      +      W++ 
Sbjct: 139 MVKNFDLLDEDGLLILEEPKNAPFLPDDEKWIVE 172


>gi|296314313|ref|ZP_06864254.1| ribosomal protein L11 methyltransferase [Neisseria polysaccharea
           ATCC 43768]
 gi|296838974|gb|EFH22912.1| ribosomal protein L11 methyltransferase [Neisseria polysaccharea
           ATCC 43768]
          Length = 295

 Score = 38.4 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  + L +  K G+ +LD   GSG     A KL   S +G+++ +  I
Sbjct: 143 GTGSHPTTR---LCLKWLDTQLKNGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAI 199

Query: 259 DIATK 263
             +  
Sbjct: 200 RASKD 204


>gi|237749837|ref|ZP_04580317.1| ribosomal protein L11 methyltransferase [Helicobacter bilis ATCC
           43879]
 gi|229374587|gb|EEO24978.1| ribosomal protein L11 methyltransferase [Helicobacter bilis ATCC
           43879]
          Length = 305

 Score = 38.4 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 73/244 (29%), Gaps = 26/244 (10%)

Query: 107 SYHNIFRIGTMLQNLNFW-ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS--PKAKG 163
           S +  F    +L   N      D + +K     N + +R +  H      SP   PK   
Sbjct: 33  SSYTPFIAKEILAQRNLKEKKGDFLNKKLIAHANKKLKRAKTKHLLFCKNSPKYTPKIPQ 92

Query: 164 YTFNYDALKAANEDVQMRSDWLIP-------ICSGSERLRNKDGEKL------------H 204
            T N +     N+D        I            S    N+D E L            H
Sbjct: 93  ITINANIFLCQNKDWITEYKQSIKPVICARFYIRPSWHEENRDYENLIIDPSLSFGSGHH 152

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            T    A+   +L         ILD   GSG    VA KL  +    +   +  + + K 
Sbjct: 153 ATT---AMCIDLLSEMELRDKNILDVGCGSGILSLVAAKLHANIYACDTDIEACNQSKKN 209

Query: 265 IASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLIS 324
            A+                 +  V  +  V    I    +L   + ++   +  DG LI 
Sbjct: 210 FATNNLSYKEVWQGSLQSLKQFEVPKSYDVICANI-VSSVLLLLKKDLIFYLKQDGILIL 268

Query: 325 GTEL 328
              L
Sbjct: 269 SGIL 272


>gi|229031961|ref|ZP_04187947.1| Ribosomal protein L11 methyltransferase [Bacillus cereus AH1271]
 gi|228729351|gb|EEL80342.1| Ribosomal protein L11 methyltransferase [Bacillus cereus AH1271]
          Length = 312

 Score = 38.4 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 55/173 (31%), Gaps = 26/173 (15%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-------------HPTQKPEALL 213
           ++             SD    + +  E       EK+             HPT     + 
Sbjct: 109 DWATAWKKYYHPVQISDTFTIVPTWEEYTPASPEEKIIELDPGMAFGTGTHPTTT---MC 165

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATK--RIASVQP 270
            R L  + +PGD I+D   GSG     A KL  S +   ++    ++ A    R+     
Sbjct: 166 IRALEKTVQPGDTIIDVGTGSGVLSIAAAKLGASSVQAYDLDPVAVESAEMNVRLNKTDD 225

Query: 271 LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
           + ++    L      P      L+   L+    +L       +A V   G L 
Sbjct: 226 IVSVGQNSLLEGIEGPV----DLIVANLLAEIILLFPED---AARVVKSGGLF 271


>gi|228957587|ref|ZP_04119338.1| O-antigen biosynthesis protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228802086|gb|EEM48952.1| O-antigen biosynthesis protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 229

 Score = 38.4 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 56/160 (35%), Gaps = 24/160 (15%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L  +  E  +    P  LL  I     +    +LD     G  GA  K+      GIE  
Sbjct: 8   LYEEKSEHYYNAANP-NLLKHIKKEWKE----VLDIGCSGGALGAAIKENGTRVSGIEAF 62

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNA---QG 310
            +  + A +R+  V  LG+IE   L  +  +   V F  ++E         L +      
Sbjct: 63  PEAAEQAKERLDHVI-LGDIEKIELPYEEGQFDCVIFGDVLEH--------LFDPWAVIE 113

Query: 311 NISATVCADGTLISGTELGSIHRVGAKVSGSETCNG-WNF 349
            +   +  +G +++     SI  V      +    G W +
Sbjct: 114 KVKPYIKQNGVILA-----SIPNVAHISVLAPLLAGNWTY 148


>gi|229192523|ref|ZP_04319485.1| Ribosomal protein L11 methyltransferase [Bacillus cereus ATCC
           10876]
 gi|228590947|gb|EEK48804.1| Ribosomal protein L11 methyltransferase [Bacillus cereus ATCC
           10876]
          Length = 312

 Score = 38.4 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 17/110 (15%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-------------HPTQKPEALL 213
           ++             SD    + +  E   +   EK+             HPT     + 
Sbjct: 109 DWATAWKKYYHPVQISDTFTIVPTWEEYTPSSPDEKIIELDPGMAFGTGTHPTTT---MC 165

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIAT 262
            R L  + +PGD I+D   GSG     A KL  S +   ++    ++ A 
Sbjct: 166 IRALEKTVQPGDTIIDVGTGSGVLSIAAAKLGASSVQAYDLDPVAVESAE 215


>gi|237718549|ref|ZP_04549030.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|260174988|ref|ZP_05761400.1| putative methyltransferase [Bacteroides sp. D2]
 gi|293373066|ref|ZP_06619434.1| methyltransferase domain protein [Bacteroides ovatus SD CMC 3f]
 gi|315923221|ref|ZP_07919461.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|229452009|gb|EEO57800.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|292631952|gb|EFF50562.1| methyltransferase domain protein [Bacteroides ovatus SD CMC 3f]
 gi|313697096|gb|EFS33931.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 249

 Score = 38.4 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 54/139 (38%), Gaps = 17/139 (12%)

Query: 227 ILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           +LD   G G   A A +       GI++ +  ++ A KR  +  PL   +   +     +
Sbjct: 46  VLDLGCGFGWHCAYAIEHGATHATGIDISEKMLEEARKR--NPSPLIEYQCMAIEDFDFQ 103

Query: 286 PRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCN 345
           P  ++++++        +  T+    I+ ++   GT +   E    H +       +   
Sbjct: 104 PD-SYDIVISSLTFHYLESFTDICRKINNSLTPGGTFVFSVE----HPIFTAYGNQD--- 155

Query: 346 GWNFWYFEKLGELH--SIN 362
               W++++ G+     ++
Sbjct: 156 ----WHYDQDGKPIHWPVD 170


>gi|156398859|ref|XP_001638405.1| predicted protein [Nematostella vectensis]
 gi|156225525|gb|EDO46342.1| predicted protein [Nematostella vectensis]
          Length = 435

 Score = 38.4 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 2   SQKNSLAINENQNSIFE-WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           ++   +  N  Q  + + + D II   S SVL   P    D I  DPPY ++   +  + 
Sbjct: 259 ARDEVMRTNFRQAGLEQLFVDAIIADASRSVLRATP--IFDAIITDPPYGVREGVRKLKA 316

Query: 61  DHSLVD 66
           D++ VD
Sbjct: 317 DNNSVD 322



 Score = 36.9 bits (84), Expect = 5.9,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           +PG +I DPF G+G             IG ++ ++ + 
Sbjct: 207 RPGTLIFDPFVGTGNILLACAHFGGHVIGSDIDKNLVQ 244


>gi|91786284|ref|YP_547236.1| hypothetical protein Bpro_0374 [Polaromonas sp. JS666]
 gi|91695509|gb|ABE42338.1| hypothetical protein Bpro_0374 [Polaromonas sp. JS666]
          Length = 146

 Score = 38.4 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 13/110 (11%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILV------SSTKPGDIILDPFFGSGTSGAVAKKL 244
              RL N+   ++HP   P  LL  I        + T     ILDPF GSGT    A   
Sbjct: 16  NWVRLGNQLTHQIHP--YPAKLLPHIAHFFARASTYTGKQGRILDPFCGSGTVALEASLA 73

Query: 245 RRSFIGIEMKQDYIDIATKR-----IASVQPLGNIELTVLTGKRTEPRVA 289
               +  +     + I   +     +  ++   +  L  +   RT P ++
Sbjct: 74  GHKPLVADANPLALLITRVKTTPYNLEELRASLDSLLKRVVRYRTAPNIS 123


>gi|257865975|ref|ZP_05645628.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257872308|ref|ZP_05651961.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257875602|ref|ZP_05655255.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
 gi|257799909|gb|EEV28961.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257806472|gb|EEV35294.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257809768|gb|EEV38588.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
          Length = 184

 Score = 38.4 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 51/135 (37%), Gaps = 15/135 (11%)

Query: 225 DIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            ++LD F GSG     A        + ++     I +  + IA  +      +  +   +
Sbjct: 43  GVVLDLFSGSGGLAIEAVSRGAEHAVCVDRSFPAIKVIRENIAITKEPEKFTVLKMDANQ 102

Query: 284 TEPRVA-----FNLLV------ERGLIQPGQ-ILTNAQGNISATVC--ADGTLISGTELG 329
              + A     F+ L       ++ ++Q  + +L +      A V    D +++   ++G
Sbjct: 103 ALRQFAAEGQSFDYLFLDPPYAKQEILQQLEAMLKDELIRPFAYVVCETDKSIVLPEKIG 162

Query: 330 SIHRVGAKVSGSETC 344
           S+H + A+  G    
Sbjct: 163 SLHLMRAQTYGISAV 177


>gi|289577354|ref|YP_003475981.1| methyltransferase small [Thermoanaerobacter italicus Ab9]
 gi|289527067|gb|ADD01419.1| methyltransferase small [Thermoanaerobacter italicus Ab9]
          Length = 248

 Score = 38.4 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 17/109 (15%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFAD-PPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
            E + KII+G+   + + L  +  D I    PPY               V A  D   K 
Sbjct: 91  MEKRIKIIQGDVRGIEKTLGYEKFD-IVTSNPPY-------------MPVKAGFDKKRKS 136

Query: 76  SSFEAYDAF--TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
            +   Y+ +     ++ A  ++LK  G  +++     +  I   L+  N
Sbjct: 137 ENIARYEIYGGLEEFIKAASKLLKFGGKFFMVHRAERLVDILYFLRKYN 185


>gi|226952438|ref|ZP_03822902.1| methyltransferase [Acinetobacter sp. ATCC 27244]
 gi|226836890|gb|EEH69273.1| methyltransferase [Acinetobacter sp. ATCC 27244]
          Length = 222

 Score = 38.4 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 22/140 (15%)

Query: 184 WLIPICSGSERL--------RNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGS 234
           WLIP    ++RL         N+    +       A+   +L       D ++LD   GS
Sbjct: 40  WLIPPVFPTDRLDDEVIRRIWNETPYWIFCWASGLAMAQWLLAEPHHVKDKVVLDFGAGS 99

Query: 235 GTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
           G     AK    +  I  ++ Q  + +A+ R  ++     +E      K  +  V     
Sbjct: 100 GVVAIAAKMAGAKRVICCDIDQ--VSLASCRENALLNNVELEYLDDLYKSEQVDV----- 152

Query: 294 VERGLIQPGQILTNAQGNIS 313
                +    +L +      
Sbjct: 153 -----LLAADVLYDQCNRFF 167


>gi|224543229|ref|ZP_03683768.1| hypothetical protein CATMIT_02429 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523862|gb|EEF92967.1| hypothetical protein CATMIT_02429 [Catenibacterium mitsuokai DSM
           15897]
          Length = 185

 Score = 38.4 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 14/108 (12%)

Query: 225 DIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            I LD F GSG  G  A          ++ +     +  + I +++      +T     +
Sbjct: 43  GICLDLFAGSGGLGIEALSRGMDELYAVDKQYKAFQVIRENINNLK------ITNAHVMK 96

Query: 284 TEPRVAFNLLVERGLIQPGQILTNA------QGNISATVCADGTLISG 325
            + R A     E G IQ   +L +         +I  T+  +G L  G
Sbjct: 97  ADYRKALGTFKEEG-IQFSLVLLDPPYGMKINKDIIHTLKDNGNLKDG 143


>gi|30022391|ref|NP_834022.1| ribosomal protein L11 methyltransferase [Bacillus cereus ATCC
           14579]
 gi|218230809|ref|YP_002369121.1| ribosomal protein L11 methyltransferase [Bacillus cereus B4264]
 gi|228960580|ref|ZP_04122228.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229129592|ref|ZP_04258561.1| Ribosomal protein L11 methyltransferase [Bacillus cereus BDRD-Cer4]
 gi|229152514|ref|ZP_04280705.1| Ribosomal protein L11 methyltransferase [Bacillus cereus m1550]
 gi|38605209|sp|Q818F1|PRMA_BACCR RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|226710053|sp|B7HCT8|PRMA_BACC4 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|29897949|gb|AAP11223.1| Ribosomal protein L11 methyltransferase [Bacillus cereus ATCC
           14579]
 gi|218158766|gb|ACK58758.1| ribosomal protein L11 methyltransferase [Bacillus cereus B4264]
 gi|228630945|gb|EEK87583.1| Ribosomal protein L11 methyltransferase [Bacillus cereus m1550]
 gi|228653860|gb|EEL09729.1| Ribosomal protein L11 methyltransferase [Bacillus cereus BDRD-Cer4]
 gi|228799093|gb|EEM46062.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 312

 Score = 38.4 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 56/173 (32%), Gaps = 26/173 (15%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-------------HPTQKPEALL 213
           ++             SD    + +  E   +   EK+             HPT     + 
Sbjct: 109 DWATAWKKYYHPVQISDTFTIVPTWEEYTPSSPDEKIIELDPGMAFGTGTHPTTT---MC 165

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATK--RIASVQP 270
            R L  + +PGD I+D   GSG     A KL  S +   ++    ++ A    R+     
Sbjct: 166 IRALEKTVQPGDNIIDVGTGSGVLSIAAAKLGASSVQAYDLDPVAVESAEMNVRLNKTDD 225

Query: 271 LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
           + ++    L      P      L+   L+    +L       +A V   G L 
Sbjct: 226 IVSVGQNSLLEGIEGPV----DLIVANLLAEIILLFPED---AARVVKSGGLF 271


>gi|332711374|ref|ZP_08431306.1| RNA methyltransferase, RsmD family [Lyngbya majuscula 3L]
 gi|332349923|gb|EGJ29531.1| RNA methyltransferase, RsmD family [Lyngbya majuscula 3L]
          Length = 179

 Score = 38.4 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
           ++++G+ +  L+ L  +  D I+ DPPY   L
Sbjct: 91  RVLQGDVVRRLKTLAPQQFDHIYFDPPYASDL 122


>gi|291549887|emb|CBL26149.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [Ruminococcus torques L2-14]
          Length = 318

 Score = 38.4 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 55/163 (33%), Gaps = 12/163 (7%)

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
           ++  E + W +   K     +  D L   + +    SD    +           G  +H 
Sbjct: 100 ESQTEDVDWVNNWKKYFHQFYVDDILIIPSWEDVKPSDEDKMVIHID--PGTAFGTGMHE 157

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKR 264
           T     L  R +   T     ILD   GSG  G +A K      +G ++    ID   + 
Sbjct: 158 TT---QLCIRQIRKYTTETTKILDVGCGSGILGMLALKFGAEHSVGTDLDPCAIDATYEN 214

Query: 265 IASV----QPLGNIELTVLTGKRTEPRVAFN--LLVERGLIQP 301
           + +          +   ++  K  + +V +    +V   ++ P
Sbjct: 215 MENNGVSRDKYEVMIGNIINDKEVQDKVGYECYDIVAANILAP 257


>gi|281204782|gb|EFA78977.1| hypothetical protein PPL_08445 [Polysphondylium pallidum PN500]
          Length = 361

 Score = 38.4 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           ILDPF G G+  A+A  +  + IG+++
Sbjct: 222 ILDPFCGKGSVLAIANLIGLNSIGVDL 248


>gi|298530216|ref|ZP_07017618.1| ribosomal L11 methyltransferase [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298509590|gb|EFI33494.1| ribosomal L11 methyltransferase [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 295

 Score = 38.4 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK--RIASVQPLGNIELTVLTGKRTE 285
           LD   GSG  G    +L  S +G+++    ++ A +  RI  V  +  +    L+  R  
Sbjct: 149 LDLGTGSGILGIACSRLGMSGLGVDIDPVAVENAQENTRINRVGEMFEVREGGLSSLR-- 206

Query: 286 PRVAFNLLV 294
           P   FNL++
Sbjct: 207 PDQKFNLIL 215


>gi|261418480|ref|YP_003252162.1| ribosomal protein L11 methyltransferase [Geobacillus sp. Y412MC61]
 gi|319767559|ref|YP_004133060.1| ribosomal protein L11 methyltransferase [Geobacillus sp. Y412MC52]
 gi|261374937|gb|ACX77680.1| ribosomal protein L11 methyltransferase [Geobacillus sp. Y412MC61]
 gi|317112425|gb|ADU94917.1| ribosomal protein L11 methyltransferase [Geobacillus sp. Y412MC52]
          Length = 312

 Score = 38.4 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 73/197 (37%), Gaps = 27/197 (13%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD-----GEKLHPTQKPEALLS 214
            A  +  +Y  +K + +   + +       S  E +   D     G   HPT     +  
Sbjct: 110 WATAWKKHYHPVKVSEKFTIVPTWETYEPASSDELIIEMDPGMAFGTGTHPTT---VMCL 166

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK--RIASVQPL 271
           + L    +PGD ++D   GSG    VA  L  RS   +++    +D A    ++  VQ +
Sbjct: 167 QALEKYVRPGDHVIDVGTGSGILSIVAAMLGARSVRALDLDPVAVDSARLNVKLNKVQHI 226

Query: 272 GNIELTVLTGKRTEP--RVAFNLLVE-----RG----LIQPGQILTNA---QGNISATVC 317
             +    L     EP   +  N+L E      G    L++PG     +   Q        
Sbjct: 227 VTVSQNNLLDHIEEPADVIVANILAEIILRFTGDAYRLLKPGGRFITSGIIQAKKQDV-- 284

Query: 318 ADGTLISGTELGSIHRV 334
            DG L +G  +  I+ +
Sbjct: 285 KDGLLAAGFAIEEINVM 301


>gi|187933903|ref|YP_001885380.1| O-methyltransferase family protein [Clostridium botulinum B str.
           Eklund 17B]
 gi|187722056|gb|ACD23277.1| O-methyltransferase family protein [Clostridium botulinum B str.
           Eklund 17B]
          Length = 214

 Score = 38.4 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
           E K KI +G+ + VLEKL  +  DLIF D
Sbjct: 106 ENKIKIEQGDCLEVLEKLE-EPFDLIFMD 133


>gi|229496524|ref|ZP_04390238.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
           35406]
 gi|229316421|gb|EEN82340.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
           35406]
          Length = 403

 Score = 38.0 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
           +SI   + + +  ++   L+ +   S DLI  DPP
Sbjct: 275 DSIAGGRHEGVVADAFEYLKGIAKGSFDLIVLDPP 309


>gi|153839976|ref|ZP_01992643.1| methyltransferase [Vibrio parahaemolyticus AQ3810]
 gi|149746502|gb|EDM57493.1| methyltransferase [Vibrio parahaemolyticus AQ3810]
          Length = 404

 Score = 38.0 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 41/130 (31%), Gaps = 22/130 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + +  + + +  LE    +  DLIF DPP         +     +  +     D      
Sbjct: 291 QHRFEQADCLQWLENAKGEY-DLIFIDPP--------TFSNSKRMETSFDVQRDHIK--- 338

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                    +   +R+L+  GT+    +  +       L  L     N  +  ++ P+  
Sbjct: 339 --------LMTNLKRLLRAGGTIVFSNNKRHFKMDEEGLAELGLKAQN--ISSQTLPLDF 388

Query: 140 FRGRRFQNAH 149
            R +   N  
Sbjct: 389 SRNKHIHNCW 398


>gi|315641542|ref|ZP_07896611.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus
           italicus DSM 15952]
 gi|315482679|gb|EFU73206.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus
           italicus DSM 15952]
          Length = 389

 Score = 38.0 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 69/202 (34%), Gaps = 10/202 (4%)

Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
            +   + W     K       +D     +        WL P  + S        + L   
Sbjct: 92  RSTNYIKWLPKLAKHTKKNNLHDIHIHYDLGNDFYQLWLDPTLTYSCAYFQTPEDTLEQA 151

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA-KKLRRSFIGIEMKQDYIDIATKRI 265
           Q    +   +     +PG+ +LD   G GT    A K+      GI + +   +  T+RI
Sbjct: 152 QIN-KVHHILDKLFIQPGETLLDIGCGWGTLMLTAVKEYNVKATGITLSKKQYEYITQRI 210

Query: 266 ASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISG 325
              + L +    +L   R    V+++ +   G+ +   +  ++     A +     L++ 
Sbjct: 211 QE-EGLQDRCEVILEDYRDVRDVSYDHITSVGMFE--HVGADSLEEYFAVIK---RLLAP 264

Query: 326 TELGSIHRVGAKVSGSETCNGW 347
                IH +  +  G+   N W
Sbjct: 265 KGTALIHGISRQQGGAT--NAW 284


>gi|15679861|ref|NP_276979.1| met-10+ protein [Methanothermobacter thermautotrophicus str. Delta
           H]
 gi|2623010|gb|AAB86339.1| met-10+ protein [Methanothermobacter thermautotrophicus str. Delta
           H]
          Length = 352

 Score = 38.0 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRR--SFIGIEMKQDYIDIATK--RIASVQPL 271
           + +  K G+++LD F G+G       +  R      +++    +    +  R+   + +
Sbjct: 181 VAAQVKDGEVVLDMFAGAGPFAIAVARHGRASRVYAVDINPAAVRYIEENARLNHAEDV 239


>gi|313896539|ref|ZP_07830088.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312974724|gb|EFR40190.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 191

 Score = 38.0 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 59/155 (38%), Gaps = 20/155 (12%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL--RRSFIGIEMKQDYIDIAT 262
           P  K E  +  ++ +   P  ++ D   G+G+    A ++  +     IE   D I +  
Sbjct: 16  PMTKEEIRILTLVKARITPDAVVYDVGAGTGSISIEAARMAPQGHVYAIEKNPDGIALIA 75

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNL-LVERGLI-QPGQILTNAQGNISATVCADG 320
           +   + +  G   +TV+ G  T P V  +L  ++  +I   G+ L +    I A +   G
Sbjct: 76  E---NAKKFGAENITVVEG--TAPDVLADLPALDAAIIGGSGRKLADILDIIGARLRPQG 130

Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKL 355
            +++                   C   ++++  K 
Sbjct: 131 RIVANAITM---------QTVAAC--LDYFHAHKD 154


>gi|193078145|gb|ABO13089.2| hypothetical protein A1S_2673 [Acinetobacter baumannii ATCC 17978]
          Length = 222

 Score = 38.0 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 45/140 (32%), Gaps = 22/140 (15%)

Query: 184 WLIPICSGSERL--------RNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGS 234
           WLIP    ++RL         N     +       A+   IL       D ++LD   GS
Sbjct: 40  WLIPPVFPTDRLDDEVIRRIWNDTPYWIFCWASGLAMAQWILAEPHHVKDKVVLDFGAGS 99

Query: 235 GTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
           G     AK    +  I  ++ Q  ++   +       L ++EL  L       +V     
Sbjct: 100 GVVAIAAKMAGAKRVICCDIDQVSLNACRE----NALLNDVELEYLDDLYKAEQVD---- 151

Query: 294 VERGLIQPGQILTNAQGNIS 313
               ++    +L +      
Sbjct: 152 ----VLLAADVLYDQYNRFF 167


>gi|169794976|ref|YP_001712769.1| hypothetical protein ABAYE0813 [Acinetobacter baumannii AYE]
 gi|213157613|ref|YP_002320411.1| ribosomal protein L11 methyltransferase [Acinetobacter baumannii
           AB0057]
 gi|215482527|ref|YP_002324715.1| Ribosomal protein L11 methyltransferase (PrmA) family protein
           [Acinetobacter baumannii AB307-0294]
 gi|301345672|ref|ZP_07226413.1| Ribosomal protein L11 methyltransferase (PrmA) family protein
           [Acinetobacter baumannii AB056]
 gi|301512709|ref|ZP_07237946.1| Ribosomal protein L11 methyltransferase (PrmA) family protein
           [Acinetobacter baumannii AB058]
 gi|301594948|ref|ZP_07239956.1| Ribosomal protein L11 methyltransferase (PrmA) family protein
           [Acinetobacter baumannii AB059]
 gi|332855134|ref|ZP_08435717.1| ribosomal protein L11 methyltransferase [Acinetobacter baumannii
           6013150]
 gi|332868247|ref|ZP_08438085.1| ribosomal protein L11 methyltransferase [Acinetobacter baumannii
           6013113]
 gi|169147903|emb|CAM85766.1| conserved hypothetical protein [Acinetobacter baumannii AYE]
 gi|213056773|gb|ACJ41675.1| ribosomal protein L11 methyltransferase [Acinetobacter baumannii
           AB0057]
 gi|213986507|gb|ACJ56806.1| Ribosomal protein L11 methyltransferase (PrmA) family protein
           [Acinetobacter baumannii AB307-0294]
 gi|332727637|gb|EGJ59056.1| ribosomal protein L11 methyltransferase [Acinetobacter baumannii
           6013150]
 gi|332733477|gb|EGJ64648.1| ribosomal protein L11 methyltransferase [Acinetobacter baumannii
           6013113]
          Length = 222

 Score = 38.0 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 184 WLIPICSGSERL--------RNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGS 234
           WLIP    ++RL         N     +       A+   IL       D ++LD   GS
Sbjct: 40  WLIPPVFPTDRLDDEVICRIWNDTPYWIFCWASGLAMAQWILAEPHHVKDKVVLDFGAGS 99

Query: 235 GTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           G     AK    +  I  ++ Q  ++   +
Sbjct: 100 GVVAIAAKMAGAKRVICCDIDQVSLNACRE 129


>gi|308183314|ref|YP_003927441.1| adenine-specific methyltransferase [Helicobacter pylori PeCan4]
 gi|308065499|gb|ADO07391.1| adenine-specific methyltransferase [Helicobacter pylori PeCan4]
          Length = 329

 Score = 38.0 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 52/130 (40%), Gaps = 12/130 (9%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
           +  L +     ++    +++ + ++  ++EK+     D+++ DPPYN +  G  Y   ++
Sbjct: 171 QKELILKGADFNLSSNANEVYQQDASELIEKISG---DILYLDPPYNARQYGANYHLLNT 227

Query: 64  LVDAVTDSWDKFSSFEAYDA--FT-RAWLLACRRVLKPNGTL-WVIGSYHNIF-----RI 114
           +           +   +Y    F  RA +L     L       ++  SY+N        I
Sbjct: 228 IAAYTPFDPKGKTGLPSYQKSSFCSRAKILNAFENLIKTARFKYIFLSYNNEGLMGETEI 287

Query: 115 GTMLQNLNFW 124
           G +L+    +
Sbjct: 288 GNILKKYGAY 297


>gi|307728376|ref|YP_003905600.1| methyltransferase [Burkholderia sp. CCGE1003]
 gi|307582911|gb|ADN56309.1| methyltransferase [Burkholderia sp. CCGE1003]
          Length = 204

 Score = 38.0 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 1   MSQKNSLA---INENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN 50
           M ++N+ A   +  NQ  +     +I + +++ +   LP  S D++F DPP+ 
Sbjct: 90  MVERNARAAAQLRANQQRLSARVIEIAEADALRLAASLPPASFDVVFLDPPFG 142


>gi|229090260|ref|ZP_04221505.1| O-antigen biosynthesis protein [Bacillus cereus Rock3-42]
 gi|228693040|gb|EEL46756.1| O-antigen biosynthesis protein [Bacillus cereus Rock3-42]
          Length = 232

 Score = 38.0 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 56/160 (35%), Gaps = 24/160 (15%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L  +  E  +    P  LL  I     +    +LD     G  GA  K+      GIE  
Sbjct: 11  LYEEKSEHYYNAANP-NLLKYIKKEWKE----VLDIGCSGGALGAAIKENGTRVSGIEAF 65

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNA---QG 310
            +  + A +R+  V  LG+IE   L  +  +   V F  ++E         L +      
Sbjct: 66  PEAAEKAKERLDHVI-LGDIEKIDLPYEEGQFDCVIFGDVLEH--------LFDPWAVIE 116

Query: 311 NISATVCADGTLISGTELGSIHRVGAKVSGSETCNG-WNF 349
            +   +  +G +++     SI  V      +    G W +
Sbjct: 117 KVKPYIKQNGVILA-----SIPNVAHISVLAPLLAGNWTY 151


>gi|119510215|ref|ZP_01629353.1| hypothetical protein N9414_10533 [Nodularia spumigena CCY9414]
 gi|119465165|gb|EAW46064.1| hypothetical protein N9414_10533 [Nodularia spumigena CCY9414]
          Length = 441

 Score = 38.0 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 8/107 (7%)

Query: 226 IILDPFFGSG--TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
           +ILD   GSG  +            +G ++  + + +A +R+       N E  VL  + 
Sbjct: 60  LILDAGCGSGYKSLMLAEANPGAKIVGFDISPESVKLARERL-DYHGFDNAEFHVLALEE 118

Query: 284 TEP---RVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTE 327
                 +  +    E   + P   +      + A +  DG + +   
Sbjct: 119 LPSLNQQFDYINCDELLYLLPDINV--GLKAMQAVLKPDGIIRTNLH 163


>gi|302547192|ref|ZP_07299534.1| putative methyltransferase [Streptomyces hygroscopicus ATCC 53653]
 gi|302464810|gb|EFL27903.1| putative methyltransferase [Streptomyces himastatinicus ATCC 53653]
          Length = 284

 Score = 38.0 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 49/134 (36%), Gaps = 24/134 (17%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR--- 264
            P+AL+ RI+ +   P   +LD   G+G       +     +G+E+     D+A +R   
Sbjct: 49  YPQALVDRIVAAGPGPD--VLDVGCGTGIVARQFAEAGSRVLGVEVDARMADLARRRGID 106

Query: 265 -----IASVQPLGNIELTVLTGKR-------TEPRVAFNLLVERGLI-------QPGQIL 305
                     P       V++G+          P  A   L  RGL+       QP   L
Sbjct: 107 VEVASFEDWDPADRRFDAVVSGQTWHWVDPLAGPAKAAQALRPRGLLALFWNAAQPSPEL 166

Query: 306 TNAQGNISATVCAD 319
           T A  ++   V  D
Sbjct: 167 TEAFTDVYRRVIPD 180


>gi|148263503|ref|YP_001230209.1| SAM-dependent methyltransferase-like protein [Geobacter
           uraniireducens Rf4]
 gi|146397003|gb|ABQ25636.1| SAM-dependent methyltransferase [Geobacter uraniireducens Rf4]
          Length = 401

 Score = 38.0 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKL--PAKSVDLIFADPP 48
           N   N +   + + I G+ ++V+++L    K  D+I  DPP
Sbjct: 266 NFGANRLNPKRHEFIVGDCLNVMQELARQGKVYDIIIMDPP 306


>gi|315032690|gb|EFT44622.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0017]
 gi|315143715|gb|EFT87731.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX2141]
          Length = 277

 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV-AKKLRR---SFIGIEMKQDYIDI 260
           P  + E L+ R L ++      ++D   G+GT     + KL R     I I++ ++ + +
Sbjct: 93  PRPETEELVERCLKANPDTPLTVVD--VGTGTGAIAISLKLARPNWRVIAIDLSEEALTV 150

Query: 261 ATK 263
           A K
Sbjct: 151 AKK 153


>gi|261881201|ref|ZP_06007628.1| methyltransferase [Prevotella bergensis DSM 17361]
 gi|270332070|gb|EFA42856.1| methyltransferase [Prevotella bergensis DSM 17361]
          Length = 132

 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQ 52
           +++    AI  +  +       +I+G+++  L  L    A  +D+ + DPPYN  
Sbjct: 56  LTEVKERAIVGDTETEHYPNHILIEGDNLHALTALSYTHAGKIDVFYIDPPYNTG 110


>gi|226365445|ref|YP_002783228.1| O-methyltransferase [Rhodococcus opacus B4]
 gi|226243935|dbj|BAH54283.1| putative O-methyltransferase [Rhodococcus opacus B4]
          Length = 212

 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 21/39 (53%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
            ++   N I   + ++I G ++ VL +L   + DL+F D
Sbjct: 97  KLSFRTNDIAPARTRLINGRALDVLPRLADGAYDLVFVD 135


>gi|196044339|ref|ZP_03111575.1| conserved hypothetical protein [Bacillus cereus 03BB108]
 gi|225863165|ref|YP_002748543.1| hypothetical protein BCA_1254 [Bacillus cereus 03BB102]
 gi|301052856|ref|YP_003791067.1| methyltransferase [Bacillus anthracis CI]
 gi|196024978|gb|EDX63649.1| conserved hypothetical protein [Bacillus cereus 03BB108]
 gi|225787925|gb|ACO28142.1| conserved hypothetical protein [Bacillus cereus 03BB102]
 gi|300375025|gb|ADK03929.1| methyltransferase, putative [Bacillus cereus biovar anthracis str.
           CI]
          Length = 229

 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 56/160 (35%), Gaps = 24/160 (15%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L  +  E  +    P  LL  I     +    +LD     G  GA  K+      GIE  
Sbjct: 8   LYEEKSEHYYNAANP-NLLKHIKKEWKE----VLDIGCSGGALGAAIKENGTRVSGIEAF 62

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNA---QG 310
            +  + A +R+  V  LG+IE   L  +  +   V F  ++E         L +      
Sbjct: 63  PEAAEKAKERLDHVI-LGDIEKIDLPYEEGQFDCVIFGDVLEH--------LFDPWAVIE 113

Query: 311 NISATVCADGTLISGTELGSIHRVGAKVSGSETCNG-WNF 349
            +   +  +G +++     SI  V      +    G W +
Sbjct: 114 KVKPYIKQNGVILA-----SIPNVAHISVLAPLLAGNWTY 148


>gi|111022939|ref|YP_705911.1| O-methyltransferase [Rhodococcus jostii RHA1]
 gi|110822469|gb|ABG97753.1| probable O-methyltransferase [Rhodococcus jostii RHA1]
          Length = 212

 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 21/39 (53%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
            ++   N I   + ++I G ++ VL +L   + DL+F D
Sbjct: 97  KLSFRTNDIAPARTRLINGRALDVLPRLADGAYDLVFVD 135


>gi|15894164|ref|NP_347513.1| cyclopropane fatty acid synthase [Clostridium acetobutylicum ATCC
           824]
 gi|15023773|gb|AAK78853.1|AE007603_4 Cyclopropane fatty acid synthase [Clostridium acetobutylicum ATCC
           824]
 gi|325508292|gb|ADZ19928.1| Cyclopropane fatty acid synthase [Clostridium acetobutylicum EA
           2018]
          Length = 391

 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 8/159 (5%)

Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
           R    +  LI   P+   K            N+  ++  D  +    G  +  N   E+ 
Sbjct: 91  RNGEKYSKLIKILPNTIRKSKKDIKFHYDIGNDFYKLWLDKTMTYSCGYFKSPNDSLEQ- 149

Query: 204 HPTQKPEALLSRILVSSTKPGDIIL-DPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIA 261
              QK +  +  IL   +   D+ L D   G G      AK+     +G+ + ++   + 
Sbjct: 150 --AQKNK--VEHILKKLSLKKDVTLLDIGCGWGELIITAAKEYGVKALGVTLSEEQFKVV 205

Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
            +R+   + L      +L   R      F+ +V  G+I+
Sbjct: 206 KERVKK-EGLEGRVDVILEDYREIKNRTFDRVVSVGMIE 243


>gi|327399468|ref|YP_004340337.1| hypothetical protein Hipma_1321 [Hippea maritima DSM 10411]
 gi|327182097|gb|AEA34278.1| protein of unknown function Met10 [Hippea maritima DSM 10411]
          Length = 380

 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 7   LAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
           +  N + N I  +  KII G+    L+    ++ D+I  DPP
Sbjct: 247 IETNCSLNGIKNY--KIINGDVFDFLKN-ETETYDMIIIDPP 285


>gi|291542172|emb|CBL15282.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Ruminococcus bromii L2-63]
          Length = 280

 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 5/98 (5%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
            +++ + E       DLI ++PPY    + +  + +  L   +          E    F 
Sbjct: 167 ADALEICETFADGEFDLIVSNPPYIKSADIETLQKEVRLEPRLA-----LDGGEDGCDFY 221

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
           R  +    R LK  G L      +    +  ++ +  F
Sbjct: 222 REIVSRWSRKLKKGGALAFELGENQADAVKALMTDKGF 259


>gi|227530340|ref|ZP_03960389.1| possible surface protein C [Lactobacillus vaginalis ATCC 49540]
 gi|227349748|gb|EEJ40039.1| possible surface protein C [Lactobacillus vaginalis ATCC 49540]
          Length = 668

 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 39/144 (27%), Gaps = 14/144 (9%)

Query: 71  SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
           SW K +    Y     AW        K     W    Y N + +    +  N W   D V
Sbjct: 452 SWQKINDHWYYFDPVNAWAQ--TGWFKSGAGFWYFFDYSNAWALTGWQRLNNRWYYFDPV 509

Query: 131 ------WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
                     +P   +    + NA     W   +     Y F+     A       R  W
Sbjct: 510 NANAQTGWFQSPAGYWYFFDYNNAWALTGWQWINGHW--YWFDNTNASAYTGWKWYRGYW 567

Query: 185 LI----PICSGSERLRNKDGEKLH 204
                      +    N+D  +L+
Sbjct: 568 YFFNQENAWMSTGWTTNRDNNELY 591


>gi|118476788|ref|YP_893939.1| O-antigen biosynthesis protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|229183515|ref|ZP_04310739.1| O-antigen biosynthesis protein [Bacillus cereus BGSC 6E1]
 gi|118416013|gb|ABK84432.1| possible O-antigen biosynthesis protein [Bacillus thuringiensis
           str. Al Hakam]
 gi|228599925|gb|EEK57521.1| O-antigen biosynthesis protein [Bacillus cereus BGSC 6E1]
          Length = 232

 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 56/160 (35%), Gaps = 24/160 (15%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L  +  E  +    P  LL  I     +    +LD     G  GA  K+      GIE  
Sbjct: 11  LYEEKSEHYYNAANP-NLLKHIKKEWKE----VLDIGCSGGALGAAIKENGTRVSGIEAF 65

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNA---QG 310
            +  + A +R+  V  LG+IE   L  +  +   V F  ++E         L +      
Sbjct: 66  PEAAEKAKERLDHVI-LGDIEKIDLPYEEGQFDCVIFGDVLEH--------LFDPWAVIE 116

Query: 311 NISATVCADGTLISGTELGSIHRVGAKVSGSETCNG-WNF 349
            +   +  +G +++     SI  V      +    G W +
Sbjct: 117 KVKPYIKQNGVILA-----SIPNVAHISVLAPLLAGNWTY 151


>gi|159903949|ref|YP_001551293.1| putative methyltransferase for ribosomal protein L11
           [Prochlorococcus marinus str. MIT 9211]
 gi|159889125|gb|ABX09339.1| putative methyltransferase for Ribosomal protein L11
           [Prochlorococcus marinus str. MIT 9211]
          Length = 305

 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 56/183 (30%), Gaps = 14/183 (7%)

Query: 88  WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
           W L    +      +    +  + F I  +      +    ++         F     Q 
Sbjct: 26  WKLQHLSIKSYAIEIDPKNNSRSFFYIWLISSEWPKYQREQLINCFKPLARTFDKTLEQV 85

Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK------DGE 201
             E +     S   K Y           + + +   W+    S SER+  K       G 
Sbjct: 86  TWEKVDDEDWSSSWKKY----WGPAPVGKRLLILPAWMDLPASYSERIVVKLDPGAAFGT 141

Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDI 260
             HPT K   L    +         I+D   GSG  G  A +L  +  IG+++    I  
Sbjct: 142 GDHPTTK---LCLEAIERQRPKDLRIVDIGCGSGVLGLAALRLGAKEVIGVDIDPLAIGS 198

Query: 261 ATK 263
           A +
Sbjct: 199 AQR 201


>gi|57242064|ref|ZP_00370004.1| adenine specific DNA methyltransferase (mod) [Campylobacter
           upsaliensis RM3195]
 gi|57017256|gb|EAL54037.1| adenine specific DNA methyltransferase (mod) [Campylobacter
           upsaliensis RM3195]
          Length = 204

 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 15/86 (17%)

Query: 228 LDPFFGSGTSGAVAKKL------RRSFIGIEMKQD--------YIDIATKRIASVQPLGN 273
           LD F GSGT      +L       R FI +++ +           D     + S  P+ +
Sbjct: 2   LDFFAGSGTIAQAVMELNAEDGGNRQFILVQLDEPIDEAKSKVAYDFCKNTLKSQNPVIS 61

Query: 274 IELTVLTGKRTEPRVAFNLLVERGLI 299
            ++T+   KR   ++A   L+    +
Sbjct: 62  -DITIERVKRAAAKIAKQDLLSTKEL 86


>gi|308177324|ref|YP_003916730.1| SAM-dependent methyltransferase [Arthrobacter arilaitensis Re117]
 gi|307744787|emb|CBT75759.1| SAM-dependent methyltransferase [Arthrobacter arilaitensis Re117]
          Length = 202

 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 7/122 (5%)

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ-PLG 272
           +R + +    G  ILD   G+G  G    +     +G+++    ID+A       Q  +G
Sbjct: 41  ARTVDAMVARGSRILDAGCGTGRIGGWLSEQGHQVVGVDLDPHLIDVARVDYPKAQWQVG 100

Query: 273 NIELTVLTGKRTEPRVAFNLLVERG----LIQPGQILTNAQGNISATVCADGTLISGTEL 328
           N+    + G   E R  F+L+V  G     +   + L   Q  +   + ADG +I G   
Sbjct: 101 NLADFTIAGAAGE-RQEFDLIVSAGNVVTFLSESERLPALQ-QLREQLAADGRMIIGFGS 158

Query: 329 GS 330
           G 
Sbjct: 159 GR 160


>gi|254465429|ref|ZP_05078840.1| SAM-dependent methyltransferase [Rhodobacterales bacterium Y4I]
 gi|206686337|gb|EDZ46819.1| SAM-dependent methyltransferase [Rhodobacterales bacterium Y4I]
          Length = 404

 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 4/34 (11%)

Query: 19  WKDKII--KGNSISVLEKL--PAKSVDLIFADPP 48
           +KDK    +G++  VL  L    +S D++  DPP
Sbjct: 277 FKDKFTARQGDAFDVLTALGEEGESFDVVICDPP 310


>gi|167379517|ref|XP_001735171.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165902964|gb|EDR28651.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 382

 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 2/83 (2%)

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
           +++  KPG+I+ D F G G     A          ++    +     RI +V     IE 
Sbjct: 208 IINQMKPGEILCDAFAGVGPFAIPAALKGVKVYANDLNPTAVKYM--RINAVNNKTTIEC 265

Query: 277 TVLTGKRTEPRVAFNLLVERGLI 299
             +  +    ++     ++   I
Sbjct: 266 DNMDARDYLRKIVIEKHIQPNYI 288


>gi|86606105|ref|YP_474868.1| hypothetical protein CYA_1437 [Synechococcus sp. JA-3-3Ab]
 gi|86554647|gb|ABC99605.1| conserved hypothetical protein [Synechococcus sp. JA-3-3Ab]
          Length = 422

 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 2/84 (2%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG-TSGAVAKK 243
             P  +        D   L       A   R     +  G +IL+   GSG  +  VA  
Sbjct: 16  EFPYPNVPIEQTVTDNFALFANSITTARYLRDRKVVSPEGKVILNAGCGSGWETLVVATA 75

Query: 244 L-RRSFIGIEMKQDYIDIATKRIA 266
                ++G+++  + I  A +R  
Sbjct: 76  NPGARYVGVDISPESIKTAEQRFK 99


>gi|87121293|ref|ZP_01077183.1| hypothetical protein MED121_23289 [Marinomonas sp. MED121]
 gi|86163450|gb|EAQ64725.1| hypothetical protein MED121_23289 [Marinomonas sp. MED121]
          Length = 744

 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 7/38 (18%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKS---VDLIFADPP 48
           N   E   K+++ +    L+     S    DLIF DPP
Sbjct: 610 NEFSERDHKVVRADCFEWLK----NSEDMFDLIFMDPP 643


>gi|95928734|ref|ZP_01311480.1| ribosomal L11 methyltransferase [Desulfuromonas acetoxidans DSM
           684]
 gi|95135079|gb|EAT16732.1| ribosomal L11 methyltransferase [Desulfuromonas acetoxidans DSM
           684]
          Length = 198

 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 5/103 (4%)

Query: 227 ILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           ILD   G+G     A KL  RS + I++    +     R+ S     + ++  + G  + 
Sbjct: 64  ILDLGSGTGILAIAALKLGARSAVCIDIDPAAVATC--RLNSQLNGVDADIDHVCGTLSN 121

Query: 286 PRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTEL 328
              A   LV   +   G IL N   ++S   CAD  L+    L
Sbjct: 122 LPEAAYDLVLANI--YGDILVNVAEDLSQRACADAPLLLSGIL 162


>gi|320008548|gb|ADW03398.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptomyces flavogriseus ATCC 33331]
          Length = 281

 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 19/110 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY-------NLQLNGQLYRPDHSLVDAVTDSWDK 74
            + +G+++S L +L    VDL+ ++PPY        +    + + P  +L     D  D 
Sbjct: 161 TVHRGDALSALPEL-DGQVDLVISNPPYIPLTEWEYVAPEARDHDPQMALFSG-EDGLDT 218

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
               E              R+L+P G + +  +     ++  +      W
Sbjct: 219 IRGIE----------RTAHRLLRPGGLVVIEHADTQGGQVPWIFTEERGW 258


>gi|194873870|ref|XP_001973294.1| GG13433 [Drosophila erecta]
 gi|190655077|gb|EDV52320.1| GG13433 [Drosophila erecta]
          Length = 615

 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 66/205 (32%), Gaps = 21/205 (10%)

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW----LIPICSGSERLRNKDGE 201
           ++ +E L   +P      Y  +    +A      +   W    +     G +   +    
Sbjct: 333 KSFYEELAKDAPYKCTSLYYQDVKHREAGQMINPVEHIWGSTHITDTIQGLQFRISPLAF 392

Query: 202 KLHPTQKPEALLSRILVSSTKPGDII-LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
               T+    L  + +       D   LD   G+GT      K  R  +G+E+  D I  
Sbjct: 393 FQINTEGANVLYQKAIDLVAPTKDTTMLDICCGTGTITLAFAKHCRKVMGVEIVPDAIKD 452

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
           A     + +  G       TG         N  ++  +++  + L + +      + A  
Sbjct: 453 AE---FNAEANGIKNAKFFTG-------NANDFIKS-MVR--EALYDQEPGKPVDLIA-- 497

Query: 321 TLISGTELGSIHRVGAKVSGSETCN 345
            ++     G  HR  A +  ++  N
Sbjct: 498 -VVDPPRAGLHHRSIAAIRSADAIN 521


>gi|310827304|ref|YP_003959661.1| hypothetical protein ELI_1712 [Eubacterium limosum KIST612]
 gi|308739038|gb|ADO36698.1| hypothetical protein ELI_1712 [Eubacterium limosum KIST612]
          Length = 206

 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 17/136 (12%)

Query: 198 KDGEKLHPTQKPEALLSRILVSSTK-PGDIILDPFFGSGTS-GAVAKKLRRSFIGIEMKQ 255
           +D +K H  +  + +   I+          ILD   G+G     + K+L   + G+++ +
Sbjct: 20  EDYDKSHDGKFVQCMYDTIVNRVLDLNPKTILDLGCGNGNIIARLQKRLNADYYGLDISE 79

Query: 256 DYIDIATKRIASVQ-PLGNIELTVLTGKRTEPRVAFNLLV----ERGLIQPGQILTNAQG 310
             I  A KR+ +V   +G+ E       +      F+ +V          P  ++     
Sbjct: 80  AMIAQAEKRLLNVHFMVGDAEKLPYEDNK------FDAIVCNASFHHYPHPKAVI----R 129

Query: 311 NISATVCADGTLISGT 326
            I   +  DGTLI G 
Sbjct: 130 EIQRVLKKDGTLILGD 145


>gi|258544900|ref|ZP_05705134.1| methylase [Cardiobacterium hominis ATCC 15826]
 gi|258519820|gb|EEV88679.1| methylase [Cardiobacterium hominis ATCC 15826]
          Length = 721

 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 21/107 (19%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           + + ++IK + ++ L +      DLI  DPP          + +  + D   +       
Sbjct: 600 DSRHRLIKADVMAWLAE-GDSQYDLILCDPP-----TFSNTKKEQRVFDVQRNH------ 647

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
                      +  C R L P GTL+   +Y   F++   +      
Sbjct: 648 --------VTLIERCMRRLAPGGTLYFSNNYRG-FKLDPAIAERYHC 685


>gi|253573471|ref|ZP_04850814.1| RsmD family RNA methyltransferase [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251846999|gb|EES75004.1| RsmD family RNA methyltransferase [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 200

 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 17  FEWKDKIIKGNSISVLEKLP--AKSVDLIFADPPYNLQ 52
           FE   ++ K ++   L+ L     S DL+F DPPY L+
Sbjct: 89  FETMAEVYKNDAERALKALAKREASFDLVFLDPPYRLK 126


>gi|218440731|ref|YP_002379060.1| methyltransferase type 11 [Cyanothece sp. PCC 7424]
 gi|218173459|gb|ACK72192.1| Methyltransferase type 11 [Cyanothece sp. PCC 7424]
          Length = 440

 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 8/83 (9%)

Query: 226 IILDPFFGSG-TSGAVAKKL-RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
           +ILD   G+G T+  +A+       IG+++ ++ + +A +R+ S      IE   ++ + 
Sbjct: 56  LILDVACGTGFTTLCLAEANPGAKIIGVDISEESVKLARERL-SYHGFNEIEFYCMSLED 114

Query: 284 TEPRVAFNLLVERGLIQPGQILT 306
                  +L +E   I   ++L 
Sbjct: 115 LP-----SLGLEFDYINAEEVLY 132


>gi|167630723|ref|YP_001681222.1| methyltransferase, putative [Heliobacterium modesticaldum Ice1]
 gi|167593463|gb|ABZ85211.1| methyltransferase, putative [Heliobacterium modesticaldum Ice1]
          Length = 250

 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 42/118 (35%), Gaps = 6/118 (5%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE- 285
           +LD   G+G       K     +G+++  D + +   R       G + L     +R E 
Sbjct: 39  VLDLACGTGAITERLLKRGYRVVGVDLSPDMLAVCADRHEEYLERGQLLLLNQDMRRLEY 98

Query: 286 PRVAFNLLVE---RGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSG 340
           PR    ++        +   + LT     ++ T+   G L++       H++   +  
Sbjct: 99  PRQVEAIVCFLDGLNYLASVEDLTQTLSRVAKTLAPGGVLVADLHTE--HKLSTVLGN 154


>gi|328885060|emb|CCA58299.1| Methylase of polypeptide chain release factors [Streptomyces
           venezuelae ATCC 10712]
          Length = 281

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 19/110 (17%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY-------NLQLNGQLYRPDHSLVDAVTDSWDK 74
            + +G+++S L +L    VDL+ ++PPY        +    + + P+ +L     D  D 
Sbjct: 161 TVHQGDALSALPEL-DGQVDLVISNPPYIPLTEWEYVAPEARDHDPEMALFSG-EDGLDT 218

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
               E              R+L+P G + +  +     ++  +      W
Sbjct: 219 IRGIE----------RTAHRLLRPGGLVVIEHADTQGGQVPWIFNEEAGW 258


>gi|328863984|gb|EGG13083.1| hypothetical protein MELLADRAFT_32431 [Melampsora larici-populina
           98AG31]
          Length = 218

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 5   NSLAINENQNSIFEWKDKI--IKGNSISVLEKLPAKSVDLIFADPPYN 50
           N +A+ E+  +++  +DKI  I  + I  ++     SVD+IF  PP+ 
Sbjct: 71  NKIALAEHNATVYGVEDKIEFICADFIEWIQNQEKGSVDVIFLSPPWG 118


>gi|296504806|ref|YP_003666506.1| 50S ribosomal protein L11 [Bacillus thuringiensis BMB171]
 gi|296325858|gb|ADH08786.1| ribosomal protein L11 [Bacillus thuringiensis BMB171]
          Length = 312

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 56/173 (32%), Gaps = 26/173 (15%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-------------HPTQKPEALL 213
           ++             SD    + +  E   +   EK+             HPT     + 
Sbjct: 109 DWATAWKKYYHPVQISDTFTIVPTWEEYTPSSPDEKIIELDPGMAFGTGTHPTTT---MC 165

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATK--RIASVQP 270
            R L  + +PGD I+D   GSG     A KL  S +   ++    ++ A    R+     
Sbjct: 166 IRALEKTVQPGDAIIDVGTGSGVLSIAAAKLGASSVQAYDLDPVAVESAEMNVRLNKTDD 225

Query: 271 LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
           + ++    L      P      L+   L+    +L       +A V   G L 
Sbjct: 226 IVSVGQNSLLEGIEGPV----DLIVANLLAEIILLFPED---AARVVKSGGLF 271


>gi|261330222|emb|CBH13206.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 295

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 41/120 (34%), Gaps = 10/120 (8%)

Query: 204 HPTQK---PEALLSRILVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYID 259
           H   K   P  +   + +      D   D   G+G+    VA       +GIE+ +    
Sbjct: 106 HLCAKSLLPTFVSRMVRLMEITSEDTFYDLGCGNGSILFQVAFLTGARCVGIEISEHNAK 165

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A K    ++P         +  R+ P V         ++   + L  ++   +  + ++
Sbjct: 166 VAKKAWEVIRP-----ELEGSSGRSMPEVNIITSDMTKILAD-ERLFESERGKTVILLSN 219


>gi|297566408|ref|YP_003685380.1| ribosomal L11 methyltransferase [Meiothermus silvanus DSM 9946]
 gi|296850857|gb|ADH63872.1| ribosomal L11 methyltransferase [Meiothermus silvanus DSM 9946]
          Length = 253

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 29/85 (34%), Gaps = 7/85 (8%)

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKP--EALLSRILVSSTKPGDIILDPFFGSGTS 237
               W  P            G   H T +   EAL  R+     KPG  +LD   GSG  
Sbjct: 80  PWHRWEGPEQRILLEPGMAFGTGHHETTRMALEALAERV-----KPGMRVLDLGTGSGIL 134

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIAT 262
              A+ L    +G++     I  A 
Sbjct: 135 AIAAQMLGAWAVGVDNDPAVIPQAR 159


>gi|257387512|ref|YP_003177285.1| methyltransferase type 11 [Halomicrobium mukohataei DSM 12286]
 gi|257169819|gb|ACV47578.1| Methyltransferase type 11 [Halomicrobium mukohataei DSM 12286]
          Length = 250

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 46/129 (35%), Gaps = 13/129 (10%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSST--------KPGDIILDPFFGSGTSGAVAKKLRR 246
              K G + +P +    L +R +   T        +P D +LD   G+G+      +   
Sbjct: 9   TTQKSGGQWYPAEPMVRLTARFIQRRTGIDSYDVKRPTDRVLDVGCGNGSHVLFFAEQGL 68

Query: 247 SFIGIEMKQDYIDIATKRIASV-----QPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP 301
           S  G+++ +  I++  +R A          G+        +  +  V+  +L      + 
Sbjct: 69  SAAGVDISKPAIELGRQRAAETGLDVDFKTGDAADLSWGSETFDLVVSDGVLDHVSFSEA 128

Query: 302 GQILTNAQG 310
             IL   Q 
Sbjct: 129 KSILAEIQR 137


>gi|188589222|ref|YP_001920527.1| O-methyltransferase family protein [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188499503|gb|ACD52639.1| O-methyltransferase family protein [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 214

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
           E K KI +G+ + VLEKL  +  DLIF D
Sbjct: 106 EDKIKIEQGDCLEVLEKLE-EPFDLIFMD 133


>gi|218899480|ref|YP_002447891.1| ribosomal protein L11 methyltransferase [Bacillus cereus G9842]
 gi|228967381|ref|ZP_04128415.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|226710052|sp|B7IYG5|PRMA_BACC2 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|218543467|gb|ACK95861.1| ribosomal protein L11 methyltransferase [Bacillus cereus G9842]
 gi|228792307|gb|EEM39875.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 312

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 56/173 (32%), Gaps = 26/173 (15%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-------------HPTQKPEALL 213
           ++             SD    + +  E   +   EK+             HPT     + 
Sbjct: 109 DWATAWKKYYHPVQISDTFTIVPTWEEYTPSSPDEKIIELDPGMAFGTGTHPTTT---MC 165

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATK--RIASVQP 270
            R L  + +PGD I+D   GSG     A KL  S +   ++    ++ A    R+     
Sbjct: 166 IRALEKTVQPGDAIIDVGTGSGVLSIAAAKLGASSVQAYDLDPVAVESAEMNVRLNKTDD 225

Query: 271 LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
           + ++    L      P      L+   L+    +L       +A V   G L 
Sbjct: 226 IVSVGQNSLLEGIEGPV----DLIVANLLAEIILLFPED---AARVVKSGGLF 271


>gi|72392449|ref|XP_847025.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62358963|gb|AAX79413.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70803055|gb|AAZ12959.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 295

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 41/120 (34%), Gaps = 10/120 (8%)

Query: 204 HPTQK---PEALLSRILVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYID 259
           H   K   P  +   + +      D   D   G+G+    VA       +GIE+ +    
Sbjct: 106 HLCAKSLLPTFVSRMVRLMEITSEDTFYDLGCGNGSILFQVAFLTGARCVGIEISEHNAK 165

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A K    ++P         +  R+ P V         ++   + L  ++   +  + ++
Sbjct: 166 VAKKAWEVIRP-----ELEGSSGRSMPEVNIITSDMTKILAD-ERLFESERGKTVILLSN 219


>gi|239503393|ref|ZP_04662703.1| methyltransferase [Acinetobacter baumannii AB900]
 gi|260549228|ref|ZP_05823448.1| ribosomal protein L11 methyltransferase [Acinetobacter sp. RUH2624]
 gi|260407634|gb|EEX01107.1| ribosomal protein L11 methyltransferase [Acinetobacter sp. RUH2624]
          Length = 222

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 184 WLIPICSGSERL--------RNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGS 234
           WLIP    ++RL         N     +       A+   IL       D ++LD   GS
Sbjct: 40  WLIPPVFPTDRLDDEVIRRIWNDTPYWIFCWASGLAMAQWILAEPHHVKDKVVLDFGAGS 99

Query: 235 GTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           G     AK    +  I  ++ Q  ++   +
Sbjct: 100 GVVAIAAKMAGAKRVICCDIDQVSLNACRE 129


>gi|291295970|ref|YP_003507368.1| ribosomal L11 methyltransferase [Meiothermus ruber DSM 1279]
 gi|290470929|gb|ADD28348.1| ribosomal L11 methyltransferase [Meiothermus ruber DSM 1279]
          Length = 275

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 29/86 (33%), Gaps = 7/86 (8%)

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKP--EALLSRILVSSTKPGDIILDPFFGSGTS 237
               W  P            G   H T +   E L  R+     +PG  +LD   GSG  
Sbjct: 80  PWHTWEGPEKPIVIEPGMAFGTGHHETTRMALETLAERV-----EPGMRVLDLGTGSGIL 134

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATK 263
              A  L    +GI++    I  A +
Sbjct: 135 AIGAALLGAEALGIDIDPAVIPQAIE 160


>gi|184159238|ref|YP_001847577.1| methyltransferase [Acinetobacter baumannii ACICU]
 gi|332876162|ref|ZP_08443943.1| ribosomal protein L11 methyltransferase [Acinetobacter baumannii
           6014059]
 gi|183210832|gb|ACC58230.1| predicted methyltransferase [Acinetobacter baumannii ACICU]
 gi|322509152|gb|ADX04606.1| methyltransferase [Acinetobacter baumannii 1656-2]
 gi|323519180|gb|ADX93561.1| methyltransferase [Acinetobacter baumannii TCDC-AB0715]
 gi|332735630|gb|EGJ66676.1| ribosomal protein L11 methyltransferase [Acinetobacter baumannii
           6014059]
          Length = 222

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 184 WLIPICSGSERL--------RNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGS 234
           WLIP    ++RL         N     +       A+   IL       D ++LD   GS
Sbjct: 40  WLIPPVFPTDRLDDEVIRRIWNDTPYWIFCWASGLAMAQWILAEPHHVKDKVVLDFGAGS 99

Query: 235 GTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           G     AK    +  I  ++ Q  ++   +
Sbjct: 100 GVVAIAAKMAGAKRVICCDIDQVSLNACRE 129


>gi|71892128|ref|YP_277860.1| N5-glutamine methyltransferase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|71796234|gb|AAZ40985.1| N5-glutamine methyltransferase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 278

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 21/149 (14%)

Query: 3   QKNSLAINENQNSIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPPY------NLQLNG 55
           QK +L +      +  +K+ K I G+     + L  K  +LI ++PPY       LQ   
Sbjct: 142 QKKALFLAHKNKLLLNFKNVKFIYGD---WFKYLRNKKFNLIVSNPPYIDKNDSCLQFRD 198

Query: 56  QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
            ++ P ++LV       D                    + L+ NG L +   ++    + 
Sbjct: 199 MIFEPKNALVSKQKGLED-----------LTVICKYSTQHLRQNGWLVLEHGWNQGNYMR 247

Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
            +     F  ++ I          +   +
Sbjct: 248 ALFFKFGFTHIHTIRDYHHYERVTYGKWK 276


>gi|87120518|ref|ZP_01076412.1| ribosomal protein L11 methyltransferase [Marinomonas sp. MED121]
 gi|86164161|gb|EAQ65432.1| ribosomal protein L11 methyltransferase [Marinomonas sp. MED121]
          Length = 294

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 7/108 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  +Y  ++         S    P       + +     G   HPT    AL    
Sbjct: 96  WEREWMDSYHPIQFGKRLWVCPSWRETPEPDAVNLMLDPGLAFGTGTHPTT---ALCLEW 152

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           L S       I+D   GSG  G     L  ++ +GI++    +     
Sbjct: 153 LDSIDCQDKNIIDYGCGSGILGIAGLLLGAKNMVGIDIDPQAVQATQD 200


>gi|57505834|ref|ZP_00371759.1| type IIS restriction enzyme M2 protein (mod) [Campylobacter
           upsaliensis RM3195]
 gi|57015864|gb|EAL52653.1| type IIS restriction enzyme M2 protein (mod) [Campylobacter
           upsaliensis RM3195]
          Length = 41

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIAS 267
           AK+L R+FIG E+   Y  +  +++  
Sbjct: 2   AKELGRNFIGYEIYPHYKSVIEEKLEE 28


>gi|313888449|ref|ZP_07822116.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845478|gb|EFR32872.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 542

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 8/103 (7%)

Query: 210 EALLSRILVSSTKPGD-IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           E L  + +       D  I D + G G+      K     IGIE+ +  +D A +     
Sbjct: 266 EKLYKKAIDYLEPKDDDKIYDLYCGVGSISLSVAKSGPEVIGIEIVESAVDDARENAEK- 324

Query: 269 QPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
               NI+   + G   E       L E   I P +I+ +    
Sbjct: 325 ---NNIKARFVHGPAEE---TIEKLWEEEKIAPNKIIVDPPRK 361


>gi|296241975|ref|YP_003649462.1| methyltransferase [Thermosphaera aggregans DSM 11486]
 gi|296094559|gb|ADG90510.1| methyltransferase [Thermosphaera aggregans DSM 11486]
          Length = 287

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 26/92 (28%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
              + + +  II  + +++++ L     D I  DPP                    + S 
Sbjct: 178 SRGLRDERITIINDDVLNLVKYLEDSFFDRIIHDPP------------------RFSAST 219

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
                 E Y            RVLKP G L+ 
Sbjct: 220 GDLYGLEFY--------RELFRVLKPGGILYH 243


>gi|262278068|ref|ZP_06055853.1| methyltransferase [Acinetobacter calcoaceticus RUH2202]
 gi|262258419|gb|EEY77152.1| methyltransferase [Acinetobacter calcoaceticus RUH2202]
          Length = 222

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 184 WLIPICSGSERL--------RNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGS 234
           WLIP    ++RL         N     +       A+   IL       D ++LD   GS
Sbjct: 40  WLIPPVFPTDRLDDEVIRRIWNDTPYWIFCWASGLAMAQWILAEPHHVKDKVVLDFGAGS 99

Query: 235 GTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           G     AK    +  I  ++ Q  ++   +
Sbjct: 100 GVVAIAAKMAGAKRVICCDIDQVSLNACRE 129


>gi|20807931|ref|NP_623102.1| N6-adenine-specific methylase [Thermoanaerobacter tengcongensis
           MB4]
 gi|254479492|ref|ZP_05092816.1| putative methyltransferase [Carboxydibrachium pacificum DSM 12653]
 gi|20516500|gb|AAM24706.1| N6-adenine-specific methylase [Thermoanaerobacter tengcongensis
           MB4]
 gi|214034577|gb|EEB75327.1| putative methyltransferase [Carboxydibrachium pacificum DSM 12653]
          Length = 189

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 22  KIIKGNSISVLEKLPAKSV--DLIFADPPYNLQLNGQLYRPDHSL 64
           KI   ++ + LE    KSV  D+IF DPPY   L  +  R   SL
Sbjct: 99  KIFHKDAFTALEIFHKKSVKFDIIFLDPPYYQNLAEKALRRIGSL 143


>gi|22298597|ref|NP_681844.1| hypothetical protein tlr1053 [Thermosynechococcus elongatus BP-1]
 gi|22294777|dbj|BAC08606.1| tlr1053 [Thermosynechococcus elongatus BP-1]
          Length = 182

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 228 LDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATKRIASV-QPLGNIELTVLTGKRTE 285
           LD   G+G  GA A      ++ GIE       I  +  +++ QP     +     ++  
Sbjct: 44  LDLCAGTGAMGAEALLRGAQWVVGIEQSPQACQIIRENWSALAQPHQRTLVLRGDVRQKL 103

Query: 286 PRVAFNLL 293
           P+V     
Sbjct: 104 PQVPMPQF 111



 Score = 37.3 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
           +++G+    L ++P    DLI+ DPPYN  L
Sbjct: 94  VLRGDVRQKLPQVPMPQFDLIYFDPPYNSDL 124


>gi|325267815|ref|ZP_08134465.1| methyltransferase [Kingella denitrificans ATCC 33394]
 gi|324980696|gb|EGC16358.1| methyltransferase [Kingella denitrificans ATCC 33394]
          Length = 367

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 44/131 (33%), Gaps = 15/131 (11%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
              +S DLI  +PP+         RP  ++  A+         ++   A   A L    R
Sbjct: 248 FANESADLIVCNPPWL------PARPTSAIETAL---------YDPDHAMLHALLHNAGR 292

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
            L   G LW++ S            +L  W        KS+     R  + QN H+ L +
Sbjct: 293 HLNDGGELWIVMSDLAEHLGLRAADDLQNWFAQTGWRVKSSLHTTPRHAKAQNTHDPLAF 352

Query: 155 ASPSPKAKGYT 165
           A        Y 
Sbjct: 353 ARGRETTTLYC 363


>gi|323488623|ref|ZP_08093867.1| putative RNA methylase family UPF0020 [Planococcus donghaensis
           MPA1U2]
 gi|323397840|gb|EGA90642.1| putative RNA methylase family UPF0020 [Planococcus donghaensis
           MPA1U2]
          Length = 320

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 8/113 (7%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRI------LVSSTKPGDIILDPFFGSGTS 237
           W +   S SE +     +K  P +   AL +R+      +      G   +DP  G GT 
Sbjct: 139 WYMGRYSQSEPIWFHHMKK--PREYSTALSTRVARAVANIAVPNPMGVKAVDPCCGIGTV 196

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAF 290
              A  +    +G ++    ++ + + IA     G +++  +    T   VA 
Sbjct: 197 LVEALSMGIDIVGRDINPLVVEGSRENIAHFGLTGRVDMGPIAEIETTYDVAI 249


>gi|326204207|ref|ZP_08194067.1| rRNA (guanine-N(2)-)-methyltransferase [Clostridium papyrosolvens
           DSM 2782]
 gi|325985718|gb|EGD46554.1| rRNA (guanine-N(2)-)-methyltransferase [Clostridium papyrosolvens
           DSM 2782]
          Length = 387

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 20/35 (57%)

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
            + ILVS  K   I+LDPF GSGT    A  + R+
Sbjct: 180 CAMILVSHWKKDRILLDPFCGSGTIPIEAAMIGRN 214


>gi|194014447|ref|ZP_03053064.1| RNA methyltransferase, RsmD family [Bacillus pumilus ATCC 7061]
 gi|194013473|gb|EDW23038.1| RNA methyltransferase, RsmD family [Bacillus pumilus ATCC 7061]
          Length = 185

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 36/112 (32%), Gaps = 9/112 (8%)

Query: 225 DIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
              LD F GSG  G  A        I ++     I      +  ++ +   E+     KR
Sbjct: 43  GWALDLFAGSGGLGIEALSRGFDHCIFVDRDMKAIQTIKGNLNQLELIDQSEVFRNEAKR 102

Query: 284 TEPRV-----AFNLLVERGLIQPGQI--LTNAQGNISATVCADGTLISGTEL 328
               V     +F  +      +  Q+  L +      A +  DG ++   + 
Sbjct: 103 ALAAVVKREESFQAIFLDPPYKDQQLKALLDMIDEH-ALLTDDGVIVCEHDK 153


>gi|168188108|ref|ZP_02622743.1| putative methyltransferase [Clostridium botulinum C str. Eklund]
 gi|169294056|gb|EDS76189.1| putative methyltransferase [Clostridium botulinum C str. Eklund]
          Length = 185

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)

Query: 24  IKGNSISVLEKLPAKS--VDLIFADPPY 49
           +  +S + L+    K    DLIF DPPY
Sbjct: 96  LNMDSYNALKSFANKKKIFDLIFIDPPY 123


>gi|319786046|ref|YP_004145521.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317464558|gb|ADV26290.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 220

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 11/116 (9%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
            KP      +     + GD +L+   GSG + A    L R  + IE+  +  D A +R+ 
Sbjct: 63  MKPVVEGRMLQALELQGGDSVLEIGTGSGYTTACLAALAREVVSIEVVPELADAARERLE 122

Query: 267 SVQPLGNIELTVLTGKRTEPRVAFNLLVERG-----------LIQPGQILTNAQGN 311
                 N+ +         P   F+++                ++PG  L   +G 
Sbjct: 123 RTGLGTNVRVLAADAMEYTPTRTFDVVCVTAAVDVLPTRFMEWLRPGGRLFVVRGR 178


>gi|291562412|emb|CBL41228.1| 23S rRNA (uracil-5-)-methyltransferase RumA [butyrate-producing
           bacterium SS3/4]
          Length = 607

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVS-STKPGDIILDPFFGSGTSGAVAKKLRR 246
           +C    R+ +K   +++P Q  E L +  + +      + ++D + G GT G VA    +
Sbjct: 332 LCGKKFRISSKSFYQINPVQT-EKLYNLAIEAAGLTGKETVVDAYCGIGTIGIVAASAAK 390

Query: 247 SFIGIEMKQDYIDIAT 262
             IG+E+ +D +  A 
Sbjct: 391 EVIGVELNKDAVRDAV 406


>gi|268324803|emb|CBH38391.1| conserved hypothetical protein, DUF1156 family [uncultured
           archaeon]
          Length = 908

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 36/108 (33%), Gaps = 22/108 (20%)

Query: 36  PAKSVDLIFADPPY--NLQLNG-------QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           P    D +F DPPY  N+            L R   +L   +  +     S EA     R
Sbjct: 515 PDNHFDAVFTDPPYYDNVPYADLSDFFYVWLKRSIGNLFSDLFSTPLTPKSQEAIAEPMR 574

Query: 87  A-------------WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
                               RVLKP+G   V+ ++       TML +L
Sbjct: 575 QETPKKFFEEMISYSFKEIHRVLKPHGITTVVYAHKTTAGWETMLSSL 622



 Score = 37.7 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 4/120 (3%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
           IW +  P A     N+ AL    +D++ R +    I   +     K+G   +  +K + +
Sbjct: 35  IWWARRPLASSRATNFAALIDLPDDLEKRKEITALIKKITPWEAVKNGNDANI-KKAQQM 93

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
           +            ++LDPF G G+    A +L       +     + I    +   Q  G
Sbjct: 94  IK---EQWGDQPPMVLDPFAGGGSIPLEALRLGCETYASDYNPVAVFIEKATLEWPQKFG 150


>gi|170289584|ref|YP_001739822.1| hypothetical protein TRQ2_1808 [Thermotoga sp. RQ2]
 gi|222100564|ref|YP_002535132.1| hypothetical protein CTN_1590 [Thermotoga neapolitana DSM 4359]
 gi|170177087|gb|ACB10139.1| protein of unknown function DUF1156 [Thermotoga sp. RQ2]
 gi|221572954|gb|ACM23766.1| Putative uncharacterized protein [Thermotoga neapolitana DSM 4359]
          Length = 1008

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 29/47 (61%), Gaps = 6/47 (12%)

Query: 6   SLAINENQNSIFEWKD---KIIKGNSISVLEKLPAKSVDLIFADPPY 49
           + A++ +Q ++ ++ +   K+++G++ S+   L  +  D+I  DPPY
Sbjct: 522 TSALSSSQRTLADFTENSVKVLQGDATSL--NL-GEKFDVIVTDPPY 565


>gi|148265091|ref|YP_001231797.1| methyltransferase type 12 [Geobacter uraniireducens Rf4]
 gi|146398591|gb|ABQ27224.1| Methyltransferase type 12 [Geobacter uraniireducens Rf4]
          Length = 332

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 5/93 (5%)

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI-ASVQPLGNIELTVLTGKRTEPRVAF 290
            G G    VAKK      GIE        A+ R+ +SV P+G  ++       ++     
Sbjct: 107 CGKGRFLEVAKKHGVQVYGIEPSPRSFAFASDRLGSSVSPIGLKKIDEAPSFPSKFDYVM 166

Query: 291 NLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
              V   L  PG +L+     I   + +DG ++
Sbjct: 167 LWHVLEHLSDPGSVLS----KIKEKLESDGRVV 195


>gi|323697720|ref|ZP_08109632.1| methyltransferase [Desulfovibrio sp. ND132]
 gi|323457652|gb|EGB13517.1| methyltransferase [Desulfovibrio desulfuricans ND132]
          Length = 186

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYN 50
           +++  +  SVL K P +  DL+F DPPY 
Sbjct: 98  RVVCKDLFSVLSKGPERPFDLVFIDPPYG 126


>gi|313635311|gb|EFS01601.1| putative methyltransferase [Listeria seeligeri FSL N1-067]
          Length = 432

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-R 246
           I +   + +++     +     +  +   L  S      +LDP+ GSGT+  VA +L  +
Sbjct: 6   IVNPKYKSKDRSLLYKYYAGFSDQFVLDTLGYSDLNKMTVLDPWNGSGTTTRVASQLGAK 65

Query: 247 SFIGIEMKQ 255
             +G+++  
Sbjct: 66  KIVGLDINP 74



 Score = 37.7 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 6/21 (28%), Positives = 12/21 (57%)

Query: 35  LPAKSVDLIFADPPYNLQLNG 55
           L   S+D++   PPY  +++ 
Sbjct: 243 LDDNSIDVVITSPPYCTRIDY 263


>gi|307709324|ref|ZP_07645782.1| RNA methyltransferase [Streptococcus mitis SK564]
 gi|307619907|gb|EFN99025.1| RNA methyltransferase [Streptococcus mitis SK564]
          Length = 456

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 53/146 (36%), Gaps = 8/146 (5%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGD 225
           N +A+           D++     G++            T+  E L    +  +  K  D
Sbjct: 247 NTNAIFGKEWSTLYGQDFITDQMLGNDYQIAGPAFYQVNTEMAEKLYQTAIDFAELKEDD 306

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           +++D + G GT G    K  +   G+E+  + ++ + K  A +  + N      T +   
Sbjct: 307 VVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSKKN-AQLNHISNAHYVCDTAENAM 365

Query: 286 PRVAFNLLVERGLIQPGQILTNAQGN 311
                N L E   IQP  IL +    
Sbjct: 366 ----KNWLKEG--IQPSLILVDPPRK 385


>gi|289192387|ref|YP_003458328.1| Methyltransferase type 11 [Methanocaldococcus sp. FS406-22]
 gi|288938837|gb|ADC69592.1| Methyltransferase type 11 [Methanocaldococcus sp. FS406-22]
          Length = 389

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKL--PAKSVDLIFADPP 48
           N   N+I + K + I+GN+  V++++    +  D++  DPP
Sbjct: 256 NMKLNNIPKDKYEFIEGNAFEVMKEMIEDGEKFDVVILDPP 296


>gi|254429734|ref|ZP_05043441.1| Putative RNA methylase family UPF0020 [Alcanivorax sp. DG881]
 gi|196195903|gb|EDX90862.1| Putative RNA methylase family UPF0020 [Alcanivorax sp. DG881]
          Length = 704

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 49/136 (36%), Gaps = 25/136 (18%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N     + ++ + +++  L++   +  DL+F DPP     +    R D  + +   D   
Sbjct: 586 NGFSTDQHELARMDAMRWLDECKEQ-FDLVFCDPP---TFSNNKSRSDFVVEEHHGD--- 638

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                          +    R L+P G L+   +Y        M ++++ W   + + R 
Sbjct: 639 --------------LIRKIMRCLEPGGVLYFSCNYRRF----QMDESISKWFDVEDISRW 680

Query: 134 SNPMPNFRGRRFQNAH 149
           S P    R  +    +
Sbjct: 681 SIPEDFRRNEKIHYCY 696


>gi|169632644|ref|YP_001706380.1| hypothetical protein ABSDF0804 [Acinetobacter baumannii SDF]
 gi|169151436|emb|CAP00171.1| conserved hypothetical protein [Acinetobacter baumannii]
          Length = 222

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 184 WLIPICSGSERL--------RNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGS 234
           WLIP    ++RL         N     +       A+   IL       D ++LD   GS
Sbjct: 40  WLIPPVFPTDRLDDEVIRRIWNDTPYWIFCWASGLAMAQWILAEPHHVKDKVVLDFGAGS 99

Query: 235 GTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           G     AK    +  I  ++ Q  ++   +
Sbjct: 100 GVVAIAAKMAGAKRVICCDIDQVSLNACRE 129


>gi|167757693|ref|ZP_02429820.1| hypothetical protein CLOSCI_00023 [Clostridium scindens ATCC 35704]
 gi|167664575|gb|EDS08705.1| hypothetical protein CLOSCI_00023 [Clostridium scindens ATCC 35704]
          Length = 319

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 53/158 (33%), Gaps = 24/158 (15%)

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKL---------HPTQKPE--ALLSRILVSSTK 222
             +         I +    E++  KD +KL           T   E   L  R L    K
Sbjct: 112 WKQYFHQFYIDDILVIPSWEKVEEKDSDKLVIHIDPGTAFGTGMHETTQLCIRQLKKYVK 171

Query: 223 PGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
              +ILD   GSG  G +A K   R  +G ++    ID   +            + V   
Sbjct: 172 DDTMILDVGCGSGILGMLALKFGARYSVGTDLDPCAIDATHE-----------NMEVNGI 220

Query: 282 KRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           ++ +  V    +++   +Q           ++A + AD
Sbjct: 221 RKDQYEVMIGNIIDDKAVQDKAG-YGKYDIVAANILAD 257


>gi|90415233|ref|ZP_01223167.1| ribosomal protein L11 methyltransferase [marine gamma
           proteobacterium HTCC2207]
 gi|90332556|gb|EAS47726.1| ribosomal protein L11 methyltransferase [marine gamma
           proteobacterium HTCC2207]
          Length = 295

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 40/119 (33%), Gaps = 18/119 (15%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL----HPTQKPEALLSRILVSSTK 222
            Y +     E + +   W+ P  +    L    G       HPT     L  R L     
Sbjct: 99  KYFSPMKCGERLWICPSWIEPPDASGINLSLDPGLAFGTGSHPTT---HLCLRWLDKQDL 155

Query: 223 PGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI----------DIATKRIASVQP 270
            G  ++D   GSG  G  A  L     I ++     +          +IA +RI++  P
Sbjct: 156 AGQTVIDYGCGSGILGIAALLLGAEKVIAVDNDPQALLATRDNAERNNIAAERISTYLP 214


>gi|15643747|ref|NP_228795.1| hypothetical protein TM0987 [Thermotoga maritima MSB8]
 gi|4981526|gb|AAD36066.1|AE001760_16 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 1008

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 29/47 (61%), Gaps = 6/47 (12%)

Query: 6   SLAINENQNSIFEWKD---KIIKGNSISVLEKLPAKSVDLIFADPPY 49
           + A++ +Q ++ ++ +   K+++G++ S+   L  +  D+I  DPPY
Sbjct: 522 TSALSSSQRTLADFTENSVKVLQGDATSL--NL-GEKFDVIVTDPPY 565


>gi|269121055|ref|YP_003309232.1| modification methylase, HemK family [Sebaldella termitidis ATCC
           33386]
 gi|268614933|gb|ACZ09301.1| modification methylase, HemK family [Sebaldella termitidis ATCC
           33386]
          Length = 361

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 48/131 (36%), Gaps = 13/131 (9%)

Query: 2   SQKNSLAINENQNSIFEWKDK---IIKGNSISVLEK--LPA---KSVDLIFADPPYNLQL 53
                L I+ + N++ E  +K   ++K +++  L+          S D+I ++PPY  + 
Sbjct: 213 PDSKILGIDISDNAL-EIANKNKGLLKADNVKFLKSNLFQEVNYHSFDMIISNPPYIPKS 271

Query: 54  NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
             +    D  + +      +  ++      F           LK  G L     Y+    
Sbjct: 272 EYETLSDDVRMHE----PEEALTAENEGLFFYYEISKNASDYLKNGGRLIFECGYNQAEI 327

Query: 114 IGTMLQNLNFW 124
           I ++++   + 
Sbjct: 328 IESIMKETGYK 338


>gi|254571169|ref|XP_002492694.1| Protein involved in bud-site selection [Pichia pastoris GS115]
 gi|238032492|emb|CAY70515.1| Protein involved in bud-site selection [Pichia pastoris GS115]
 gi|328353298|emb|CCA39696.1| hypothetical protein PP7435_Chr3-0742 [Pichia pastoris CBS 7435]
          Length = 269

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 27/71 (38%)

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           R    +    H   K       +L       + ILD   GSG SG +  +    +IG+++
Sbjct: 20  RKYTNNTRIQHIQAKMTLRALELLNLPKDTANFILDIGCGSGLSGEILTEEGDMWIGMDI 79

Query: 254 KQDYIDIATKR 264
             D +  A  R
Sbjct: 80  SPDMLATALDR 90


>gi|218289362|ref|ZP_03493596.1| RNA methyltransferase, TrmA family [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218240468|gb|EED07649.1| RNA methyltransferase, TrmA family [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 449

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 9/94 (9%)

Query: 206 TQKPEALLSRILVSS-TKPGDIILDPFFGSGT-SGAVAKKLRRSFIGIEMKQDYIDIATK 263
           T   E +   ++ ++  +  D+++D + G G  +  +A++  R  +G+E  +D I  A  
Sbjct: 284 TDMAERMYEHVVRAAEVRETDVVIDAYCGIGVITLLLAERAAR-AVGVEEVEDAITDARA 342

Query: 264 RIASVQPLGNIELTVLTGKRTEPRVAFNLLVERG 297
             A +  L N E  V   +R  PR      VE G
Sbjct: 343 N-AKLNRLRNTEFVVDRVERWLPR-----FVEEG 370


>gi|154687949|ref|YP_001423110.1| hypothetical protein RBAM_035500 [Bacillus amyloliquefaciens FZB42]
 gi|154353800|gb|ABS75879.1| hypothetical protein RBAM_035500 [Bacillus amyloliquefaciens FZB42]
          Length = 226

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 57/144 (39%), Gaps = 13/144 (9%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
             E L   +L    +    +LD   G+G  GA  +    +  GIE   +    A  +++ 
Sbjct: 14  YYEGLNPYLLNKIDENWRTVLDVGCGTGNLGAAIEDRGITVYGIEAYPEAAKKAESKLSH 73

Query: 268 VQPLGNIELTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNAQGNISATVCADGT-LISG 325
           V   G+IE  +L  +  +   + F  ++E  LI P  +L      +   V  DGT L   
Sbjct: 74  VL-CGDIESAILPYESEQFDCMLFGDVLEH-LIDPWSVL----KKLRPYVKKDGTVLACI 127

Query: 326 TELGSIHRVGAKVSGSETCNGWNF 349
             +G I  V   ++G      W +
Sbjct: 128 PNVGHISVVLELLAGK-----WTY 146


>gi|78224576|ref|YP_386323.1| 50S ribosomal protein L11P methyltransferase [Geobacter
           metallireducens GS-15]
 gi|123570746|sp|Q39Q76|PRMA_GEOMG RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|78195831|gb|ABB33598.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase [Geobacter
           metallireducens GS-15]
          Length = 299

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L    L      GD +LD   GSG     A KL  +  +G ++  D +
Sbjct: 145 GTGTHPTTR---LCLEALEKLGTAGD-VLDVGTGSGILAMAAVKLGAQRVVGTDIDPDAV 200

Query: 259 DIATK 263
            +A +
Sbjct: 201 AVARE 205


>gi|56962873|ref|YP_174600.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Bacillus
           clausii KSM-K16]
 gi|56909112|dbj|BAD63639.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Bacillus
           clausii KSM-K16]
          Length = 458

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            +I++D + G GT      K  R   G+E+  + I  A KR A +  + N    V   + 
Sbjct: 311 NEIVIDAYCGIGTISLFLAKKARHVYGVEIVPEAIKDA-KRNAKLNQITNATFAVGEAEE 369

Query: 284 TEPR 287
             PR
Sbjct: 370 VIPR 373


>gi|327482706|gb|AEA86016.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 398

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 6/27 (22%), Positives = 16/27 (59%), Gaps = 2/27 (7%)

Query: 24  IKGNSISVLEKLP--AKSVDLIFADPP 48
           ++G++   +++L    +  D++  DPP
Sbjct: 275 VEGDAFEAMKELKNAEERFDVVITDPP 301


>gi|301385834|ref|ZP_07234252.1| 23S rRNA m(2)G2445 methyltransferase [Pseudomonas syringae pv.
           tomato Max13]
 gi|302061853|ref|ZP_07253394.1| 23S rRNA m(2)G2445 methyltransferase [Pseudomonas syringae pv.
           tomato K40]
 gi|302135186|ref|ZP_07261176.1| 23S rRNA m(2)G2445 methyltransferase [Pseudomonas syringae pv.
           tomato NCPPB 1108]
          Length = 750

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 48/133 (36%), Gaps = 24/133 (18%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           F  K+++ +G+ ++ L+    +  DLIF DPP         +     +        D+  
Sbjct: 636 FSDKNRLEQGDVMAWLQANRDEY-DLIFIDPP--------TFSNSKRMEGIFDVQRDQVE 686

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             +          LA  R L P G L+    + N FR   + +NL      + +  ++  
Sbjct: 687 LID----------LAMAR-LAPGGVLY----FSNNFRKFVLDENLGQRYAVEDITAQTID 731

Query: 137 MPNFRGRRFQNAH 149
               R  +   A 
Sbjct: 732 PDFARNGKIHRAW 744


>gi|260556458|ref|ZP_05828676.1| ribosomal protein L11 methyltransferase family protein
           [Acinetobacter baumannii ATCC 19606]
 gi|260409717|gb|EEX03017.1| ribosomal protein L11 methyltransferase family protein
           [Acinetobacter baumannii ATCC 19606]
          Length = 222

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 184 WLIPICSGSERL--------RNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGS 234
           WLIP    ++RL         N     +       A+   IL       D ++LD   GS
Sbjct: 40  WLIPPVFPTDRLDDEVIRRIWNDTPYWIFCWASGLAMAQWILAEPHHVKDKVVLDFGAGS 99

Query: 235 GTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           G     AK    +  I  ++ Q  ++   +
Sbjct: 100 GVVAIAAKMAGAKRVICCDIDQVSLNACRE 129


>gi|156357074|ref|XP_001624049.1| predicted protein [Nematostella vectensis]
 gi|156210801|gb|EDO31949.1| predicted protein [Nematostella vectensis]
          Length = 282

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 8/82 (9%)

Query: 191 GSERLRNKDGEKLHPT-----QKPEALLSRILVSSTKPGDI---ILDPFFGSGTSGAVAK 242
             E   N+D  + +       +    L  R +     P D+   ILD   GSG SG V  
Sbjct: 12  PPEVFYNEDEARKYSANTRMIEIQNQLTERAIELLQLPDDLPCYILDVGCGSGLSGEVLS 71

Query: 243 KLRRSFIGIEMKQDYIDIATKR 264
                ++G+++ +  +D+A +R
Sbjct: 72  SEGHFWVGLDISKAMLDVAFER 93


>gi|156083939|ref|XP_001609453.1| RNA methylase [Babesia bovis T2Bo]
 gi|154796704|gb|EDO05885.1| RNA methylase, putative [Babesia bovis]
          Length = 452

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ++  K G ++LDPF GS  S   A  L     G ++  
Sbjct: 247 LALVKKGSVVLDPFVGSAGSLIAATHLGAICFGSDIDM 284


>gi|146284322|ref|YP_001174475.1| hypothetical protein PST_4010 [Pseudomonas stutzeri A1501]
 gi|145572527|gb|ABP81633.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
          Length = 398

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 6/27 (22%), Positives = 16/27 (59%), Gaps = 2/27 (7%)

Query: 24  IKGNSISVLEKLP--AKSVDLIFADPP 48
           ++G++   +++L    +  D++  DPP
Sbjct: 275 VEGDAFEAMKELKNAEERFDVVITDPP 301


>gi|121533370|ref|ZP_01665198.1| protein of unknown function DUF1156 [Thermosinus carboxydivorans
           Nor1]
 gi|121307929|gb|EAX48843.1| protein of unknown function DUF1156 [Thermosinus carboxydivorans
           Nor1]
          Length = 909

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 20/47 (42%)

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           IL S+      + DPF G G+    A++L     G ++    + I  
Sbjct: 105 ILKSTGGEPPPVYDPFCGGGSIPLEAQRLGLYARGSDLNPVAVLITK 151


>gi|146311117|ref|YP_001176191.1| 23S rRNA m(2)G2445 methyltransferase [Enterobacter sp. 638]
 gi|229560152|sp|A4W8W0|RLML_ENT38 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|145317993|gb|ABP60140.1| 23S rRNA m(2)G-2445 methyltransferase [Enterobacter sp. 638]
          Length = 702

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 21/107 (19%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++++ + +  L     +  DLIF DPP         +     + D   
Sbjct: 580 NLRLNGLTGRQHRLLQADVLGWLRD-TDEQFDLIFIDPP--------TFSNSKRMEDTFD 630

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
              D               +   +R+L+  GT+    +    FR+  
Sbjct: 631 VQRDHIR-----------LMSDLKRLLRKGGTIMFSNNKRG-FRMDN 665


>gi|323498353|ref|ZP_08103353.1| 23S rRNA m(2)G2445 methyltransferase [Vibrio sinaloensis DSM 21326]
 gi|323316595|gb|EGA69606.1| 23S rRNA m(2)G2445 methyltransferase [Vibrio sinaloensis DSM 21326]
          Length = 707

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 38/125 (30%), Gaps = 22/125 (17%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
             + +  LE       DLIF DPP         +     +  +     D           
Sbjct: 599 HADCLQWLES-STAQFDLIFIDPP--------TFSNSKRMEQSFDVQRDHI--------- 640

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
               +   +R+L+  GT+    +  +       L +L     N  +  ++ P+   R + 
Sbjct: 641 --QLMTNLKRMLRAGGTIVFSNNKRHFKMDLDALASLGLVAKN--ISTQTLPLDFSRNKH 696

Query: 145 FQNAH 149
             N  
Sbjct: 697 IHNCW 701


>gi|313887799|ref|ZP_07821479.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312846142|gb|EFR33523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 443

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           T+  E L             ++ D + G+GT   V  +  +  IG+E+ ++ ++ A +
Sbjct: 281 TKSAEVLYKMAREKIDAKDKLVFDLYSGTGTITQVLAESAKKVIGVEIVEEAVEAARE 338


>gi|229889497|sp|Q883N9|RLML_PSESM RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
          Length = 750

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 48/133 (36%), Gaps = 24/133 (18%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           F  K+++ +G+ ++ L+    +  DLIF DPP         +     +        D+  
Sbjct: 636 FSDKNRLEQGDVMAWLQANRDEY-DLIFIDPP--------TFSNSKRMEGIFDVQRDQVE 686

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             +          LA  R L P G L+    + N FR   + +NL      + +  ++  
Sbjct: 687 LID----------LAMAR-LAPGGVLY----FSNNFRKFVLDENLGQRYAVEDITAQTID 731

Query: 137 MPNFRGRRFQNAH 149
               R  +   A 
Sbjct: 732 PDFARNGKIHRAW 744


>gi|281494531|ref|NP_792130.3| methylase [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28852753|gb|AAO55825.1| methylase, putative [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 762

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 48/133 (36%), Gaps = 24/133 (18%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           F  K+++ +G+ ++ L+    +  DLIF DPP         +     +        D+  
Sbjct: 648 FSDKNRLEQGDVMAWLQANRDEY-DLIFIDPP--------TFSNSKRMEGIFDVQRDQVE 698

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             +          LA  R L P G L+    + N FR   + +NL      + +  ++  
Sbjct: 699 LID----------LAMAR-LAPGGVLY----FSNNFRKFVLDENLGQRYAVEDITAQTID 743

Query: 137 MPNFRGRRFQNAH 149
               R  +   A 
Sbjct: 744 PDFARNGKIHRAW 756


>gi|304320768|ref|YP_003854411.1| hypothetical protein PB2503_05992 [Parvularcula bermudensis
           HTCC2503]
 gi|303299670|gb|ADM09269.1| hypothetical protein PB2503_05992 [Parvularcula bermudensis
           HTCC2503]
          Length = 938

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 4/62 (6%)

Query: 209 PEALLSR----ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            E +L R    I          + DPF G G+    A++L     G ++    + I    
Sbjct: 124 NEEVLERARAEIRRCCGDELPPVYDPFSGGGSIPLEAQRLGLPAYGSDLNPVAVMIGKAM 183

Query: 265 IA 266
           I 
Sbjct: 184 IE 185


>gi|120554148|ref|YP_958499.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Marinobacter aquaeolei VT8]
 gi|120323997|gb|ABM18312.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Marinobacter aquaeolei VT8]
          Length = 202

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 50/117 (42%), Gaps = 9/117 (7%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSG-TSGAVAKKLRRSFI-GIEMKQDYIDIATKRIA 266
           P  +   + +   +  D ILD   GSG ++  +A+  +  F+ G+E+  + +++A   + 
Sbjct: 60  PYTVAFMLELLQLEESDRILDVGCGSGWSTALLAQTAKSGFVTGVELVPELLELARDNLE 119

Query: 267 SVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
              PL NI L +       P   F+ ++        + L +    +   +   GT++
Sbjct: 120 KY-PLTNIRLELAGEALGIPGQTFDKILVSA---AAEELPS---ELVDQLKPGGTMV 169


>gi|253990336|ref|YP_003041692.1| 23S rRNA methyluridine methyltransferase [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253781786|emb|CAQ84949.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Photorhabdus
           asymbiotica]
          Length = 377

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 8/91 (8%)

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
            D F G G  G           GIE+  + ID A    A    L NIE   L   R    
Sbjct: 238 WDLFCGVGGFGLHCADKNTRLTGIEISPEAIDCARDS-AKTLGLENIEFQALDSTRFA-- 294

Query: 288 VAFNLLVERGLIQP-----GQILTNAQGNIS 313
           +A   + E  L+ P     G+ L +    + 
Sbjct: 295 IAKEQIPELVLVNPPRRGIGKELCDYLSRMV 325


>gi|213968073|ref|ZP_03396218.1| methylase [Pseudomonas syringae pv. tomato T1]
 gi|213927053|gb|EEB60603.1| methylase [Pseudomonas syringae pv. tomato T1]
          Length = 789

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 48/133 (36%), Gaps = 24/133 (18%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           F  K+++ +G+ ++ L+    +  DLIF DPP         +     +        D+  
Sbjct: 675 FSDKNRLEQGDVMAWLQANRDEY-DLIFIDPP--------TFSNSKRMEGIFDVQRDQVE 725

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             +          LA  R L P G L+    + N FR   + +NL      + +  ++  
Sbjct: 726 LID----------LAMAR-LAPGGVLY----FSNNFRKFVLDENLGQRYAVEDITAQTID 770

Query: 137 MPNFRGRRFQNAH 149
               R  +   A 
Sbjct: 771 PDFARNGKIHRAW 783


>gi|209875219|ref|XP_002139052.1| tRNA guanosine-2'-O-methyltransferase TRM11 [Cryptosporidium muris
           RN66]
 gi|209554658|gb|EEA04703.1| tRNA guanosine-2'-O-methyltransferase TRM11, putative
           [Cryptosporidium muris RN66]
          Length = 479

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 3/91 (3%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK--LHPTQKPEALLSRILVSS-TKP 223
           N + ++          +W           +    E+  L PT     L   +      K 
Sbjct: 204 NCELIRVYMGRAVGIQNWHNIGKKIPWWFKYTLNERPILGPTTLDNELSFIMCNIGKVKK 263

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
             II DPF G+G +   A  L     G ++ 
Sbjct: 264 NSIIFDPFCGTGGTLIAASHLGALCFGSDLD 294


>gi|238064388|ref|ZP_04609097.1| methyltransferase type 12 [Micromonospora sp. ATCC 39149]
 gi|237886199|gb|EEP75027.1| methyltransferase type 12 [Micromonospora sp. ATCC 39149]
          Length = 201

 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 12/119 (10%)

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP--- 270
           +R+L +       +LD   G+G  GA       + +G++     I+ A   I    P   
Sbjct: 38  ARLLDAMVPRHARVLDAGCGAGRVGAALHAQGHTVVGVDADPVLIEAAG--IDHPGPRWL 95

Query: 271 LGNIELTVLTGKRTEPRVAFNLLVERG----LIQPGQILTNAQGNISATVCADGTLISG 325
           +G++    L     EP   F+  V  G     + PG       G ++A V  DG ++ G
Sbjct: 96  VGDLAELDLAAA-GEPE-PFDAAVLAGNVMAFVAPGTE-RRVLGRVAAHVRPDGAVVVG 151


>gi|227824691|ref|ZP_03989523.1| 50S ribosomal protein L11 methyltransferase [Acidaminococcus sp.
           D21]
 gi|226905190|gb|EEH91108.1| 50S ribosomal protein L11 methyltransferase [Acidaminococcus sp.
           D21]
          Length = 313

 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 9/106 (8%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKD-----GEKLHPTQKPEALLSRILVSSTK 222
           Y         + ++ DW     +  E++   D     G   H T +    + R+    T 
Sbjct: 118 YFHTTKIGSQIVIKPDWESYTPTAEEKVIELDPGMAFGTGTHATTRMC--IERLEELVTP 175

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATKRIAS 267
             D + D   GSG     A  +    I  I++    +++A + IA 
Sbjct: 176 NID-VYDVGTGSGILAMTAALMGARSIHAIDIDGKAVEVAKENIAK 220


>gi|255077270|ref|XP_002502280.1| predicted protein [Micromonas sp. RCC299]
 gi|226517545|gb|ACO63538.1| predicted protein [Micromonas sp. RCC299]
          Length = 557

 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 61/201 (30%), Gaps = 6/201 (2%)

Query: 64  LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
           L  A+ + W +  + E  +A  +A+    +      GT + +      F         N 
Sbjct: 67  LTRALIEVWGEGDTQEELNAAVKAFPDERKDPYIAEGTTFKVCV--EDFGKTEHGTEKNP 124

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
           W           P+  FRGR      + L W+     A                   R  
Sbjct: 125 WSHVVARIDALKPVLQFRGRARMKGPQHLFWS--IESANADDLKGVPSDIPPRRYFGRVV 182

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEAL-LSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
                 S   +   K    L PT     + L    +   +PG ++ DPF G+G+    A 
Sbjct: 183 ATGDR-SPLSKYDLKKRRYLGPTSMDVEMGLIMCNMIQARPGGVVWDPFCGTGSLLINAA 241

Query: 243 KLRRSFIGIEMKQDYIDIATK 263
                 +G ++    I    K
Sbjct: 242 HFGAFTMGSDIDIRVIKWGKK 262


>gi|225446283|ref|XP_002269268.1| PREDICTED: similar to methyltransferase WBSCR22 [Vitis vinifera]
 gi|296090305|emb|CBI40124.3| unnamed protein product [Vitis vinifera]
          Length = 291

 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 211 ALLSRILVSSTKPGDII----LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            L  R L     P D +    LD   GSG SG    +    +IG+++ +  ++IA++R
Sbjct: 35  KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISESMLNIASER 92


>gi|220906792|ref|YP_002482103.1| PUA domain-containing protein [Cyanothece sp. PCC 7425]
 gi|219863403|gb|ACL43742.1| PUA domain containing protein [Cyanothece sp. PCC 7425]
          Length = 397

 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 24  IKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++G++  VL +L    +  DLI  DPP  ++    L R      D    ++    S    
Sbjct: 276 LEGDAFQVLRQLREQGEQFDLIVLDPPKFVESKAHLERAARGYKDINRLAFLLLRSGGLL 335

Query: 82  DAFTRAWLLAC 92
             F+ + LL  
Sbjct: 336 ATFSCSGLLEA 346


>gi|77164071|ref|YP_342596.1| DNA methylase containing a Zn-ribbon [Nitrosococcus oceani ATCC
           19707]
 gi|254435956|ref|ZP_05049463.1| hypothetical protein NOC27_3019 [Nitrosococcus oceani AFC27]
 gi|76882385|gb|ABA57066.1| probable predicted DNA methylase containing a Zn-ribbon
           [Nitrosococcus oceani ATCC 19707]
 gi|207089067|gb|EDZ66339.1| hypothetical protein NOC27_3019 [Nitrosococcus oceani AFC27]
          Length = 1003

 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 3/89 (3%)

Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
               +    +    PI     +   + G + H     E L++++ +        + D F 
Sbjct: 185 CKRPEECDPATLYGPIWDSVNQHLGRFGVQAHS---HEELVAQLGMLRFGHRPRVGDTFC 241

Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           GSG+    A +L       ++      + 
Sbjct: 242 GSGSIPFEAARLGCEVYASDLNPIACMLT 270


>gi|306816398|ref|ZP_07450530.1| ribosomal protein L11 methyltransferase [Escherichia coli NC101]
 gi|305849963|gb|EFM50422.1| ribosomal protein L11 methyltransferase [Escherichia coli NC101]
          Length = 293

 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    +L  + 
Sbjct: 95  WEREWMDNFHPMRFGERLWICPSWRDVPDENAVNVMLDPGLAFGTGTHPTT---SLCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG       K      IGI++    I  +     + +  G  +
Sbjct: 152 LDSLDLTGKTVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRD---NAERNGVSD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L   + +P      LV   ++
Sbjct: 209 RLELYLPKDQPEEMKADLVVANIL 232


>gi|302865968|ref|YP_003834605.1| hypothetical protein Micau_1471 [Micromonospora aurantiaca ATCC
           27029]
 gi|302568827|gb|ADL45029.1| hypothetical protein Micau_1471 [Micromonospora aurantiaca ATCC
           27029]
          Length = 347

 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 9/72 (12%)

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID---------IATKRIASVQPLGNIEL 276
           ++LDP  G GT+   A       IGIE     +D         +  KR+       ++  
Sbjct: 143 VVLDPLCGRGTTLNQALMYGYDGIGIERDSQDVDAYAAFLRTWLRRKRLKHTTDSTSVRR 202

Query: 277 TVLTGKRTEPRV 288
                 R    V
Sbjct: 203 DRKLVARRFEAV 214


>gi|187778462|ref|ZP_02994935.1| hypothetical protein CLOSPO_02056 [Clostridium sporogenes ATCC
           15579]
 gi|187772087|gb|EDU35889.1| hypothetical protein CLOSPO_02056 [Clostridium sporogenes ATCC
           15579]
          Length = 312

 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 58/181 (32%), Gaps = 8/181 (4%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE-- 210
           +        +     Y      ++ + ++  W        E +   D      T   E  
Sbjct: 104 VHKVNEEDWENNWKKYYKPTKVSDKIVIKPIWENYDKKEEEIIVQLDPGMAFGTGTHETT 163

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQ 269
            +    L    K    + D   GSG     + KL  +  IG+++    +  + + I    
Sbjct: 164 RMCINALEKYIKEDKTVFDIGCGSGILSIASAKLGAKHVIGVDLDPVAVKSSKENI-KYN 222

Query: 270 PLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELG 329
            L NIE  +L G   E       +V   +I    ++      + A +  DG  I+   + 
Sbjct: 223 NLDNIE--ILEGNLMEVVEGRANIVVANII--ADVIIFLTEGVKAFIEKDGYFIASGIIN 278

Query: 330 S 330
           S
Sbjct: 279 S 279


>gi|157375610|ref|YP_001474210.1| 23S rRNA m(2)G2445 methyltransferase [Shewanella sediminis HAW-EB3]
 gi|229560181|sp|A8FW59|RLML_SHESH RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|157317984|gb|ABV37082.1| putative RNA methylase [Shewanella sediminis HAW-EB3]
          Length = 711

 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 53/155 (34%), Gaps = 27/155 (17%)

Query: 1   MSQKNSLAINENQ--NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
           MS   +    EN   N + + K + ++ N +  ++    K  DLIF DPP          
Sbjct: 577 MSNTYTNWAKENFALNGLNDDKYQFVQANCMQWIKTTHDK-FDLIFIDPP---------- 625

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
               S    + DS+D             A L +  ++L P G +    +          L
Sbjct: 626 --TFSNSKRMEDSFDVLRDH-------VALLSSLIKLLNPGGEIIFSNNKRKFKMEIEAL 676

Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           + LNF + N       N       +R    H T +
Sbjct: 677 EALNFTVKN-----IDNQTLPLDFKRNPQIHNTWL 706


>gi|153855592|ref|ZP_01996708.1| hypothetical protein DORLON_02726 [Dorea longicatena DSM 13814]
 gi|149752013|gb|EDM61944.1| hypothetical protein DORLON_02726 [Dorea longicatena DSM 13814]
          Length = 363

 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 23/39 (58%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            + ++D + G+GT G +A K  +  IG+E+ +D +  A 
Sbjct: 216 KETVIDAYCGTGTIGLIAAKNAKKVIGVELNKDAVKDAR 254


>gi|2650750|gb|AAB91317.1| predicted coding region AF_2345 [Archaeoglobus fulgidus DSM 4304]
          Length = 162

 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 29/74 (39%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G + H    P   L   ++ +      +LDPF G G+    A +L  + + ++      
Sbjct: 84  EGPRAHTQDPPAEYLKEAIIKTWGEIPTVLDPFAGGGSIPFEALRLGCNAVAVDYNPVAY 143

Query: 259 DIATKRIASVQPLG 272
            I  + +   +  G
Sbjct: 144 LILKETLEYPKKYG 157


>gi|254382182|ref|ZP_04997543.1| dehydrogenase [Streptomyces sp. Mg1]
 gi|194341088|gb|EDX22054.1| dehydrogenase [Streptomyces sp. Mg1]
          Length = 598

 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 49/135 (36%), Gaps = 22/135 (16%)

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYI-------------DIATKRIASVQPLGNIELTV 278
            G+G +  +A +  R  IGI++                   +  +R+   +  G +    
Sbjct: 21  MGTGIAEVLA-RAGREVIGIDISDTATRRATAALAAATARSVTRERLTEQEREGVLARFR 79

Query: 279 LTGKRTEPRVAFNLLVE---RGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVG 335
              + +      +L++E       +  Q L      + A V  D  L +GT   S+ R+ 
Sbjct: 80  TFTELSA-AADADLVIEVVPENY-EIKQRLF---RELDAIVRPDTILATGTNALSVTRMA 134

Query: 336 AKVSGSETCNGWNFW 350
           A+    E   G +F+
Sbjct: 135 AESQRPERVLGLHFF 149


>gi|141092|sp|P05409|TMG10_METTL RecName: Full=Probable N(2),N(2)-dimethylguanosine tRNA
           methyltransferase Trm-G10; AltName: Full=tRNA:G10
           dimethyltransferase
 gi|44620|emb|CAA30380.1| unnamed protein product [Methanothermococcus thermolithotrophicus]
          Length = 162

 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 17/108 (15%)

Query: 5   NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL--NGQLYRPDH 62
            S  + E+  SI +W      G+  S L++L  K VD I  DPPY +     G +    +
Sbjct: 57  KSYNLTEHIISIKKWN----AGDIKSFLKQLNVKYVDGIVTDPPYGISTSAKGNIEEIFN 112

Query: 63  SLVDAV-TDSWDKFSS----------FEAYDAFTRAWLLACRRVLKPN 99
           +L D +  D +  F+S           E Y+ +    L     V K  
Sbjct: 113 NLGDVLKKDGYLVFASSRKINLDLELMEMYELYIHKSLTRYIHVYKKT 160



 Score = 36.5 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 213 LSRILVSST--KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           L+  LV+ +  K GD++LDPF G+G        +    IG ++  D ++
Sbjct: 2   LAMCLVNLSRLKKGDVLLDPFCGTGGFLIEGGFMGLKLIGSDIDDDMVN 50


>gi|313233635|emb|CBY09806.1| unnamed protein product [Oikopleura dioica]
          Length = 279

 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 212 LLSRILVSSTKPGD---IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +  R +     P D   +ILD   GSG SG         ++G+++ +  +DIA 
Sbjct: 34  MSDRAIEMLCLPEDKPSLILDIGCGSGLSGECLSDQGHHWVGMDISEAMLDIAV 87


>gi|294340978|emb|CAZ89373.1| putative Ribosomal protein L11 methyltransferase (L11 Mtase) (prmA)
           [Thiomonas sp. 3As]
          Length = 298

 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 50/130 (38%), Gaps = 12/130 (9%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L    L   T     +LD   GSG     A K      +G+++  D +
Sbjct: 145 GTGTHPTTR---LCLEWLARQTPSQLSVLDYGCGSGILAIAAAKFGAGPVVGVDIDPDAV 201

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
            +AT+  A+           L  K       F+++V   L  P ++L  A   I+A V  
Sbjct: 202 -LATE--ANAAANDVTVQAGLPDKVA--DAQFDIVVANILSAPLKLLAPA---IAAHVKP 253

Query: 319 DGTLISGTEL 328
            G L+    L
Sbjct: 254 GGWLVLSGIL 263


>gi|255293199|dbj|BAH90290.1| conserved hypothetical protein [uncultured bacterium]
          Length = 316

 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 5/79 (6%)

Query: 209 PEALLSR----ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            E +L R    I  S       + DPF G G+    A++L     G ++    + I    
Sbjct: 96  NEEVLERARAEIRRSCGGELPPVYDPFSGGGSIPLEAQRLGLPAYGSDLNPVAVMIGKA- 154

Query: 265 IASVQPLGNIELTVLTGKR 283
           +  + P       +  G +
Sbjct: 155 MIEIPPKFKDMSPIHPGIK 173


>gi|18977100|ref|NP_578457.1| hypothetical protein PF0728 [Pyrococcus furiosus DSM 3638]
 gi|18892743|gb|AAL80852.1| hypothetical protein PF0728 [Pyrococcus furiosus DSM 3638]
          Length = 213

 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 217 LVSSTKPGDIILDPFFGSGT-SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S  KPG  +LD   G+G  +   A +       I++    ++IA KR+      G +E
Sbjct: 30  LTSRIKPGQRVLDVGCGTGALTLRAALR-GARVKAIDINPQMLEIARKRVEEAGVTGMVE 88


>gi|18976939|ref|NP_578296.1| hypothetical protein PF0567 [Pyrococcus furiosus DSM 3638]
 gi|18892559|gb|AAL80691.1| hypothetical protein PF0567 [Pyrococcus furiosus DSM 3638]
          Length = 890

 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 29/47 (61%), Gaps = 6/47 (12%)

Query: 6   SLAINENQNSIFEWKD---KIIKGNSISVLEKLPAKSVDLIFADPPY 49
           + A++ +Q ++ ++ +   K+++G++ S+   L  +  D+I  DPPY
Sbjct: 418 TSALSSSQRTLADFTENSVKVLQGDATSL--NL-GEKFDVIVTDPPY 461


>gi|332142167|ref|YP_004427905.1| hypothetical protein MADE_1013865 [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552189|gb|AEA98907.1| hypothetical protein MADE_1013865 [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 262

 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 45/149 (30%), Gaps = 22/149 (14%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
           I+D   G G+  A AK++    +      +Y+     R+   Q         +  +   P
Sbjct: 42  IIDFGCGVGSWLAAAKEVGFKHV-CGTDGEYVP--RDRLMIKQDEFLPNDLSIPSRANIP 98

Query: 287 RVAFNLLV-----ERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGS 341
              F+L +     E    +          + S  V     +      G I+         
Sbjct: 99  GEKFDLAMSLEVAEHLPEEVASDFVTKLTSTSDIVLFSAAIPYQGGHGHINE-------- 150

Query: 342 ETCNGW-NFWY-FEKLGELHSINTLRILV 368
                W  +W  F +  E   ++ LR  +
Sbjct: 151 ----NWLEYWARFFREQEFIPVDLLRADI 175


>gi|317129008|ref|YP_004095290.1| RNA methylase [Bacillus cellulosilyticus DSM 2522]
 gi|315473956|gb|ADU30559.1| RNA methylase [Bacillus cellulosilyticus DSM 2522]
          Length = 316

 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 9/79 (11%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK-------PGDIILDPFFGSGT 236
           W+    + S+ +     EK  P Q   AL +RI  + T            ++DP  G GT
Sbjct: 136 WVFGRYTESKPVWYYHQEK--PYQYSTALNTRIARAITNIAVPVINSNLKVIDPCCGIGT 193

Query: 237 SGAVAKKLRRSFIGIEMKQ 255
               A  +  +  G ++  
Sbjct: 194 VIIEALSMGINIEGCDINP 212


>gi|282860339|ref|ZP_06269407.1| N-6 DNA Methylase [Prevotella bivia JCVIHMP010]
 gi|282586837|gb|EFB92074.1| N-6 DNA Methylase [Prevotella bivia JCVIHMP010]
          Length = 811

 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL 64
           + I +G+S+S  +KLP  + +LI  +PP+ +    +     + +
Sbjct: 396 NNIYQGDSLSN-KKLPNDTFNLILTNPPFTIPYTFKDILNKYEM 438


>gi|218132835|ref|ZP_03461639.1| hypothetical protein BACPEC_00696 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991708|gb|EEC57712.1| hypothetical protein BACPEC_00696 [Bacteroides pectinophilus ATCC
           43243]
          Length = 318

 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQP 270
           L+ R L    K GD +LD   GSG    VA  L   S +G ++  + I IATK  A V  
Sbjct: 161 LVIRQLQKYCKKGDKVLDVGCGSGILSVVAIMLGAESALGTDLDPNAI-IATKENAEVNK 219

Query: 271 LGNIELTVLTG 281
           + N  + V+ G
Sbjct: 220 IENGRIEVIEG 230


>gi|163800853|ref|ZP_02194753.1| putative N6-adenine-specific DNA methylase [Vibrio sp. AND4]
 gi|159175202|gb|EDP59999.1| putative N6-adenine-specific DNA methylase [Vibrio sp. AND4]
          Length = 752

 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 41/130 (31%), Gaps = 22/130 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + +  + + +  LE    +  DLIF DPP         +     +  +     D      
Sbjct: 639 QHRFEQADCLQWLENAKGEY-DLIFIDPP--------TFSNSKRMETSFDVQRDHIK--- 686

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                    +   +R+L+  GT+    +  +       L  L     N  +  ++ P+  
Sbjct: 687 --------LMANLKRLLRAGGTIVFSNNKRHFKMDEAELVALGLKAQN--ISSQTLPLDF 736

Query: 140 FRGRRFQNAH 149
            R +   N  
Sbjct: 737 SRNKHIHNCW 746


>gi|119719890|ref|YP_920385.1| hypothetical protein Tpen_0982 [Thermofilum pendens Hrk 5]
 gi|119525010|gb|ABL78382.1| protein of unknown function DUF1156 [Thermofilum pendens Hrk 5]
          Length = 1001

 Score = 38.0 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY 49
           K++  ++ + L+ L  +  DLI  DPPY
Sbjct: 580 KVLLDDATT-LDMLVGEKFDLIVTDPPY 606


>gi|15616566|ref|NP_244872.1| modification methylase [Bacillus halodurans C-125]
 gi|10176629|dbj|BAB07723.1| modification methylase [Bacillus halodurans C-125]
          Length = 365

 Score = 38.0 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
           +KI K ++  ++ K+   S DLI+ D PYN +  G  Y
Sbjct: 214 NKIFKEDANELVRKI---SADLIYIDTPYNSRQYGDAY 248


>gi|295836497|ref|ZP_06823430.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptomyces sp. SPB74]
 gi|197699009|gb|EDY45942.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptomyces sp. SPB74]
          Length = 281

 Score = 38.0 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 41/109 (37%), Gaps = 19/109 (17%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY-------NLQLNGQLYRPDHSLVDAVTDSWDKF 75
           + +G++ + L +L    VDL+ ++PPY        +    + + P+ +L     D  D  
Sbjct: 162 LHQGDAFAALPEL-DGQVDLVISNPPYIPLTEWEYVAPEARDHDPEMALFSG-EDGLDTI 219

Query: 76  SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
              E              R+L+P G + V  +     ++  +      W
Sbjct: 220 RRIE----------RTAHRLLRPGGVVVVEHADTQGGQVPWLFTEERGW 258


>gi|48477484|ref|YP_023190.1| methyltransferase [Picrophilus torridus DSM 9790]
 gi|48430132|gb|AAT42997.1| methyltransferase [Picrophilus torridus DSM 9790]
          Length = 320

 Score = 38.0 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           TK  + ILDPF G+G     A    R  IG
Sbjct: 171 TKENETILDPFCGTGGILIEAALTGRKIIG 200


>gi|89095144|ref|ZP_01168069.1| hypothetical protein MED92_12581 [Oceanospirillum sp. MED92]
 gi|89080575|gb|EAR59822.1| hypothetical protein MED92_12581 [Oceanospirillum sp. MED92]
          Length = 711

 Score = 38.0 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 36/111 (32%), Gaps = 19/111 (17%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N + N +   ++  ++ + +  L     ++ DLIF DPP         +     +   + 
Sbjct: 589 NMDLNGLDNEQNLQVQSDCLKWLRVQRGEAYDLIFMDPP--------TFSNSKRMEGVLD 640

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
              D     +              R+L+  G L+   +Y         L +
Sbjct: 641 VQRDHVDLIDG-----------AMRLLRKEGVLYFSNNYRRFKIDHDALAD 680


>gi|304314211|ref|YP_003849358.1| methyltransferase [Methanothermobacter marburgensis str. Marburg]
 gi|302587670|gb|ADL58045.1| predicted methyltransferase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 338

 Score = 38.0 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR--SFIGIEMKQDYIDIATK--RIASVQ 269
             I+    K GD++LD F G+G       +  +      +++    +    +  R+   +
Sbjct: 178 REIVARQVKEGDVVLDMFAGAGPFAVAVARHGKASRIYAVDINPAAVGYIRENARLNRAE 237

Query: 270 PL 271
            +
Sbjct: 238 DI 239


>gi|297828113|ref|XP_002881939.1| hypothetical protein ARALYDRAFT_483510 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297327778|gb|EFH58198.1| hypothetical protein ARALYDRAFT_483510 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 227

 Score = 38.0 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 46/119 (38%), Gaps = 2/119 (1%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           KP  ++ R++ + + P    L P  G+G          R  +G+++ +  ++ +TK+ +S
Sbjct: 45  KPTPVIVRLVETGSLPNGRALVPGCGTGYDVVAMASPDRHVVGLDISKTAVERSTKKFSS 104

Query: 268 VQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNA--QGNISATVCADGTLIS 324
           +                EP   F+L+ +       +          +   +  DG LI+
Sbjct: 105 LPNSKYFSFLSEDFFTWEPAEKFDLIFDYTFFCAFEPGVRPLWAQQMEKLLKPDGELIT 163


>gi|251779695|ref|ZP_04822615.1| O-methyltransferase family protein [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243084010|gb|EES49900.1| O-methyltransferase family protein [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 214

 Score = 38.0 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
           E K KI +G+ + VLEKL  +  DLIF D
Sbjct: 106 EDKIKIEQGDCLEVLEKLK-EPFDLIFMD 133


>gi|195343429|ref|XP_002038300.1| GM10758 [Drosophila sechellia]
 gi|194133321|gb|EDW54837.1| GM10758 [Drosophila sechellia]
          Length = 488

 Score = 38.0 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 3/83 (3%)

Query: 39  SVDLIFADPPYNLQ-LNGQLYRPDHSLVDAVTDSWDKFSSFEAY--DAFTRAWLLACRRV 95
           S D I  DPPY ++    ++ +   +  +  ++S   + S   Y   +     L    + 
Sbjct: 300 SFDCIITDPPYGIREATEKVEKKASAKANTRSESMVHYPSTSHYSLQSLYGDLLEFSAKH 359

Query: 96  LKPNGTLWVIGSYHNIFRIGTML 118
           L+  G L     +H+      ML
Sbjct: 360 LRLGGRLVCWIPFHSEDYDPKML 382



 Score = 37.3 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 19/37 (51%)

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            +  + GD++ DPF G+G+    A K     +G ++ 
Sbjct: 209 QAMVRKGDLVFDPFVGTGSLLVSAAKWGGYVLGADID 245


>gi|111021184|ref|YP_704156.1| cyclopropane-fatty-acyl-phospholipid synthase [Rhodococcus jostii
           RHA1]
 gi|110820714|gb|ABG95998.1| cyclopropane-fatty-acyl-phospholipid synthase [Rhodococcus jostii
           RHA1]
          Length = 433

 Score = 38.0 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 84/249 (33%), Gaps = 26/249 (10%)

Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
           +  + ++L + +L  I       +P     R++   E L  +        +     +   
Sbjct: 109 LAAITRSLGWDLLRPIAPPPQEHLP-----RWRRVAEGLRHSKSRDAEVIHHHYDVSNTF 163

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL--VSSTKPGDIILDPF 231
               +     +       +E+   +  E  +          R++      +PGD +LD  
Sbjct: 164 YEYVLGPSMTYTCACYENTEQTLEEAQENKY----------RLVFEKLGLQPGDRLLDIG 213

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFN 291
            G G+    A +     IG  + ++  + A K IA  + L ++     +  R  P   F+
Sbjct: 214 CGWGSMVRYAARRGVKVIGATLSREQAEWAQKAIAE-EGLSDLAEVRFSDYRDVPETGFD 272

Query: 292 LLVERGLI-QPGQILTNAQ-GNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNF 349
            +   GL    G     A  G + + +   G L++       ++  A+        G+  
Sbjct: 273 AISSIGLTEHIGVGNYPAYFGLLQSKLREGGRLLNHCITRPDNQSQARAG------GFID 326

Query: 350 WYFEKLGEL 358
            Y    GEL
Sbjct: 327 RYVFPDGEL 335


>gi|91774379|ref|YP_544135.1| 50S ribosomal protein L11P methyltransferase [Methylobacillus
           flagellatus KT]
 gi|123078681|sp|Q1GX86|PRMA_METFK RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|91708366|gb|ABE48294.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [Methylobacillus flagellatus KT]
          Length = 295

 Score = 38.0 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT     L    L  + KP   +LD   GSG     A+KL     +G+++    I
Sbjct: 143 GTGSHPTT---HLCLSWLADTVKPDTSVLDYGCGSGILAIAARKLGAGKVVGVDIDAQAI 199

Query: 259 D 259
            
Sbjct: 200 Q 200


>gi|282864563|ref|ZP_06273618.1| 3-hydroxybutyryl-CoA dehydrogenase [Streptomyces sp. ACTE]
 gi|282560502|gb|EFB66049.1| 3-hydroxybutyryl-CoA dehydrogenase [Streptomyces sp. ACTE]
          Length = 593

 Score = 38.0 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 42/130 (32%), Gaps = 12/130 (9%)

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFN 291
            G+G    V  +  R  IGI++ +     A   + +          +   +R +    F 
Sbjct: 16  MGTG-IAEVLTRAGREVIGIDISEAAARQAVASLEASTARAVRRERITEQERRDVLARFR 74

Query: 292 LLVERGLIQPGQILTNAQ-----------GNISATVCADGTLISGTELGSIHRVGAKVSG 340
              +       +++                 + A V     L +GT   S+ R+ A+   
Sbjct: 75  TFGDPQAAADAELVIEVVPETYEIKQQVFRELDAIVSPTTILATGTNALSVTRLAAESQH 134

Query: 341 SETCNGWNFW 350
            E   G +F+
Sbjct: 135 PERVLGLHFF 144


>gi|167904493|ref|ZP_02491698.1| Type I restriction-modification system methylation subunit
           [Burkholderia pseudomallei NCTC 13177]
          Length = 832

 Score = 38.0 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 51/164 (31%), Gaps = 18/164 (10%)

Query: 90  LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAH 149
               R  K  G+ WV       F I    QN+  ++   +   ++     +      +  
Sbjct: 70  AENSRWYKKEGSFWVPSQSRYEFLINDAHQNVGDYLNKALTGIETANTSLY------DVL 123

Query: 150 ETLIWASPSPKAK-GYTFNYDALKAANEDVQMRSDWLIPICSGSERLR---------NKD 199
           E + +     ++K         +    +      D+  P   G+              K 
Sbjct: 124 EHIDFTRKVGQSKIPDIKLRQLITHFAKHRLRNEDFEFPDLLGAAYEYLIGEFADSAGKK 183

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           G + +  +    ++ R++    K    + DP  GSG     AK+
Sbjct: 184 GGEFYTPRSVVRMMVRLVKPELKHD--VYDPCCGSGGMLIAAKE 225


>gi|153955457|ref|YP_001396222.1| cyclopropane-fatty-acyl-phospholipid synthase-related protein
           [Clostridium kluyveri DSM 555]
 gi|219855869|ref|YP_002472991.1| hypothetical protein CKR_2526 [Clostridium kluyveri NBRC 12016]
 gi|146348315|gb|EDK34851.1| Cyclopropane-fatty-acyl-phospholipid synthase-related protein
           [Clostridium kluyveri DSM 555]
 gi|219569593|dbj|BAH07577.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 394

 Score = 38.0 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 54/304 (17%), Positives = 101/304 (33%), Gaps = 29/304 (9%)

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
           +  F ++       V   +G     G     F+I          IL D          N 
Sbjct: 8   FKKFLQSAFSDTVEVKYWDGMEDKYGDGKAKFKIYINGHISKKNILTDPFLAIGEAYMNN 67

Query: 141 RGRRFQNAHETL---------IWASPSPKAKGYTFNYDALKAANEDVQMRSD-------- 183
                 N  E +                 +K Y    + +K + +DVQ   D        
Sbjct: 68  LIDFEGNIREIIESVYRNKDSFLHKAEIFSKIYKVIPNNIKRSKKDVQYHYDLGDDFYSL 127

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA-VAK 242
           WL    + S     K+ + L+  Q    +   +     KPG  +LD   G G      A+
Sbjct: 128 WLDETMTYSCGYFMKEEDSLYQAQVN-KVNYILKKLQLKPGQKLLDIGCGWGNLIITAAQ 186

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR-TEPRVAFNLLVERGLI-Q 300
           K   + +GI + +   +   K+I        +++ ++  +   + + +F+ +V  G+I  
Sbjct: 187 KYGVNALGITLSKKQFEKTNKKILENNLQEKVQVKLVDYRELVKEKYSFDRIVSVGMIEH 246

Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
            G+   ++       +  +G +        +H + A+  G    N W   Y    G + S
Sbjct: 247 VGRQNLSSYMEDVKAMLKEGGISL------LHCITAQTEGE--VNQWIKKYIFPGGYIPS 298

Query: 361 INTL 364
           I  L
Sbjct: 299 IRQL 302


>gi|126465482|ref|YP_001040591.1| DNA methylase [Staphylothermus marinus F1]
 gi|126014305|gb|ABN69683.1| putative DNA methylase [Staphylothermus marinus F1]
          Length = 1005

 Score = 38.0 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY 49
           K++  ++ ++L KL  +  D+I  DPPY
Sbjct: 517 KVMLDDA-TMLRKLSNEKFDIIVTDPPY 543


>gi|331016195|gb|EGH96251.1| 23S rRNA m(2)G2445 methyltransferase [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 750

 Score = 38.0 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 48/133 (36%), Gaps = 24/133 (18%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           F  K+++ +G+ ++ L+    +  DLIF DPP         +     +        D+  
Sbjct: 636 FSDKNRLEQGDVMAWLQANRDEY-DLIFIDPP--------TFSNSKRMEGIFDVQRDQVE 686

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             +          LA  R L P G L+    + N FR   + +NL      + +  ++  
Sbjct: 687 LID----------LAMAR-LAPGGVLY----FSNNFRKFVLDENLGQRYAVEDITAQTID 731

Query: 137 MPNFRGRRFQNAH 149
               R  +   A 
Sbjct: 732 PDFARNGKIHRAW 744


>gi|296109369|ref|YP_003616318.1| protein of unknown function Met10 [Methanocaldococcus infernus ME]
 gi|295434183|gb|ADG13354.1| protein of unknown function Met10 [Methanocaldococcus infernus ME]
          Length = 331

 Score = 38.0 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 7/73 (9%)

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA-----SVQP- 270
           +       D+++D F G G      K  +     I++    I++  K I       ++P 
Sbjct: 186 IGELVNINDVVIDMFAGVGPFSIACKMAK-KIYSIDINPYAIELLKKNIELNKVYKIEPI 244

Query: 271 LGNIELTVLTGKR 283
           L ++    L G R
Sbjct: 245 LDDVRNVNLEGSR 257


>gi|11500033|ref|NP_071283.1| DNA methylase containing a Zn-ribbon module [Archaeoglobus fulgidus
           DSM 4304]
          Length = 751

 Score = 38.0 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 3/97 (3%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
           +G + H    P   L   ++ +      +LDPF G G+    A +L  + + ++      
Sbjct: 84  EGPRAHTQDPPAEYLKEAIIKTWGEIPTVLDPFAGGGSIPFEALRLGCNAVAVDYNPVAY 143

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
            I  + +   +  G     +   K+   ++ F  L E
Sbjct: 144 LILKETLEYPKKYGM--KLIYDVKKYAEQI-FRELKE 177


>gi|332993089|gb|AEF03144.1| 23S rRNA m(2)G2445 methyltransferase [Alteromonas sp. SN2]
          Length = 713

 Score = 38.0 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 31/107 (28%), Gaps = 20/107 (18%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
              ++ +  + L     K  DLIF DPP              S    +  +WD       
Sbjct: 588 HAFVQADCTTWLADHKGKY-DLIFIDPP------------SFSNSKRMQSTWDVQRDHIT 634

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
                   L   R  L   GTL    +          LQ L F I N
Sbjct: 635 M-------LTNARNCLNEGGTLIFSNNKRGFKLDEEALQELGFSIEN 674


>gi|297519493|ref|ZP_06937879.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli OP50]
          Length = 106

 Score = 38.0 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 40/123 (32%), Gaps = 22/123 (17%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           + ++ L +   +  DLIF DPP         +     + DA     D             
Sbjct: 1   DCLAWLRE-ANEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHL----------- 40

Query: 87  AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
           A +   +R+L+  GT+    +          L  L   +    + +K+      R R+  
Sbjct: 41  ALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG--LKAQEITQKTLSQDFARNRQIH 98

Query: 147 NAH 149
           N  
Sbjct: 99  NCW 101


>gi|294649728|ref|ZP_06727135.1| methyltransferase small domain protein [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292824376|gb|EFF83172.1| methyltransferase small domain protein [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 200

 Score = 38.0 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 10/82 (12%)

Query: 184 WLIPICSGSERL--------RNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGS 234
           WLIP    ++RL         N+    +       A+   +L       D ++LD   GS
Sbjct: 18  WLIPPVFPTDRLDDEVIRRIWNETPYWIFCWASGLAMAQWLLAEPHHVKDKVVLDFGAGS 77

Query: 235 GTSGAVAKKLR-RSFIGIEMKQ 255
           G     AK    +  I  ++ Q
Sbjct: 78  GVVAIAAKMAGAKRVICCDIDQ 99


>gi|210622507|ref|ZP_03293212.1| hypothetical protein CLOHIR_01160 [Clostridium hiranonis DSM 13275]
 gi|210154220|gb|EEA85226.1| hypothetical protein CLOHIR_01160 [Clostridium hiranonis DSM 13275]
          Length = 218

 Score = 38.0 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 5/48 (10%)

Query: 3   QKNSLAINENQNSIF----EWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
           ++N + I + + +I     E K  I++G++   L+ +  +  D+IF D
Sbjct: 87  ERNEVMIEKAKENIKRAGLEDKITILEGDAEETLKTIDGE-FDMIFID 133


>gi|209526045|ref|ZP_03274578.1| conserved hypothetical protein [Arthrospira maxima CS-328]
 gi|209493571|gb|EDZ93893.1| conserved hypothetical protein [Arthrospira maxima CS-328]
          Length = 162

 Score = 38.0 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 207 QKPEALLSRILVSSTKPGDIIL-DPFFGSGTSGAVA-KKLRRSFIGIEMKQDYIDIATK 263
             P+ LL  +L       D +L D   G G     A +K     +GI++  D I  AT+
Sbjct: 12  PTPQDLLEDVLRWVKVGADDVLYDLGCGDGRVAIAAAEKFGARGVGIDIDPDRIKEATE 70


>gi|154244633|ref|YP_001415591.1| hypothetical protein Xaut_0682 [Xanthobacter autotrophicus Py2]
 gi|154158718|gb|ABS65934.1| protein of unknown function DUF1156 [Xanthobacter autotrophicus
           Py2]
          Length = 848

 Score = 38.0 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 4/71 (5%)

Query: 209 PEALLSR----ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            E +L R    I  S       + DPF G G+    A++L     G ++    + I    
Sbjct: 134 NEEVLERARAEIRKSCGGELPAVYDPFSGGGSIPLEAQRLGLPAYGSDLNPVAVMIGKAT 193

Query: 265 IASVQPLGNIE 275
           I       + E
Sbjct: 194 IEIPPKFKDKE 204


>gi|332142893|ref|YP_004428631.1| putative methyltransferase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|332143062|ref|YP_004428800.1| putative methyltransferase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552915|gb|AEA99633.1| putative methyltransferase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327553084|gb|AEA99802.1| putative methyltransferase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 216

 Score = 38.0 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 19/27 (70%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPY 49
           + +G+++++L+ +     D+IF DPP+
Sbjct: 130 VHQGDALNILKGISDAPYDIIFVDPPF 156


>gi|322412536|gb|EFY03444.1| putative methyltransferase [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 160

 Score = 38.0 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 21/103 (20%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
            IN N + I +++D          +      + +L+  DPP +L+  GQ           
Sbjct: 41  KINVNPDVIGDFRD----------MP-FEDNTFNLVVFDPP-HLKYVGQKSIMKAQYGQL 88

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
             D+W +  S              C RVLK  GTL    S   
Sbjct: 89  DKDNWKEDIS---------KGFEECMRVLKVGGTLVFKWSDCQ 122


>gi|301165961|emb|CBW25535.1| putative methyltransferase [Bacteriovorax marinus SJ]
          Length = 299

 Score = 38.0 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 2/77 (2%)

Query: 28  SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
               +  L  +   LI ++PPY  +   + +   H  VD        +   ++YD + R 
Sbjct: 186 CTDRMNDLDQEKFHLIVSNPPYIKKREDRDFV--HHQVDNYEPHLALYLEDDSYDEWFRT 243

Query: 88  WLLACRRVLKPNGTLWV 104
                   L   G   +
Sbjct: 244 LFKQVLNSLYEEGIFIM 260


>gi|325680864|ref|ZP_08160402.1| DNA adenine methylase [Ruminococcus albus 8]
 gi|324107644|gb|EGC01922.1| DNA adenine methylase [Ruminococcus albus 8]
          Length = 626

 Score = 38.0 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 37/74 (50%), Gaps = 6/74 (8%)

Query: 1   MSQKNSLAINENQNSIFEW--KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
           +SQ+   A+    N++F+    +K + G++++    L  +  DL++ DPPY   L+   Y
Sbjct: 456 LSQQFLEAVEAVNNAVFDNHKANKSVNGDAMA----LDVEKPDLVYIDPPYYSPLSDNEY 511

Query: 59  RPDHSLVDAVTDSW 72
              +  ++ +   W
Sbjct: 512 VRRYHFIEGLARDW 525


>gi|260494434|ref|ZP_05814564.1| ribosomal RNA small subunit methyltransferase C [Fusobacterium sp.
           3_1_33]
 gi|260197596|gb|EEW95113.1| ribosomal RNA small subunit methyltransferase C [Fusobacterium sp.
           3_1_33]
          Length = 225

 Score = 38.0 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 14/115 (12%)

Query: 21  DKI---IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           +KI   I+   I + E   +   D+I ++PPY      ++   +H  +           S
Sbjct: 91  NKIEKNIQFECIDIREYRKSNYFDVIISNPPYMDDNGKKINENEHKAI-----------S 139

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
                      +   +R+LKP G L+ I   H +  I  +L   NF I   I   
Sbjct: 140 RHEIKLSLNELISNAKRLLKPIGLLYFIHRTHRLVEIIKVLDKNNFSIKKIIFIY 194


>gi|159041545|ref|YP_001540797.1| hypothetical protein Cmaq_0975 [Caldivirga maquilingensis IC-167]
 gi|157920380|gb|ABW01807.1| conserved hypothetical protein [Caldivirga maquilingensis IC-167]
          Length = 220

 Score = 38.0 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 207 QKPEALLSRIL-VSSTKPGDIILDPFFGSGT-SGAVAKKLRRSFIGIEMKQDYIDIATKR 264
             PE ++ R+L VS  +PG+++ D   G G      AK+     + +E++ D  +   +R
Sbjct: 9   PSPEVVVRRMLQVSGVRPGEVVYDLGCGDGRIVVMAAKEFGARAVCVEIRNDLYEQTLRR 68

Query: 265 IASV 268
           I  +
Sbjct: 69  IKEL 72


>gi|296187895|ref|ZP_06856288.1| cyclopropane-fatty-acyl-phospholipid synthase [Clostridium
           carboxidivorans P7]
 gi|296047516|gb|EFG86957.1| cyclopropane-fatty-acyl-phospholipid synthase [Clostridium
           carboxidivorans P7]
          Length = 327

 Score = 37.7 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 79/220 (35%), Gaps = 15/220 (6%)

Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
           N +  LI    +       +        N+  ++   WL    + S      + + L   
Sbjct: 30  NKYMDLIKRMSNTIKNSKEYIQHHYDIGNDFYKL---WLDSTMTYSCGYFKANDDSLETA 86

Query: 207 QKPEALLSRILVSST-KPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKR 264
           QK +  +  IL     + G  +LD   G G      AK+ +   +GI +  +      +R
Sbjct: 87  QKNK--VRHILKKLCLEEGQTLLDIGCGWGELIITAAKQYKVKAMGITLSSEQFAKVNER 144

Query: 265 IASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLIS 324
           I   + L ++    LT  R    V F+ +V  G+++        + +I     A   L++
Sbjct: 145 IKD-EGLEDLVQVKLTDYRELENVKFDRIVSVGMVE-----HVGKEHIGEYFNAVNNLLN 198

Query: 325 GTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTL 364
              +  +H + A   G    N W   +    G + S+  L
Sbjct: 199 EKGVSMLHCITAIGEGGT--NTWIDKHIFPGGYIPSVKEL 236


>gi|290558986|gb|EFD92368.1| methylase [Candidatus Parvarchaeum acidophilus ARMAN-5]
 gi|326422531|gb|EGD71927.1| Methylase [Candidatus Parvarchaeum acidophilus ARMAN-5_'5-way FS']
          Length = 193

 Score = 37.7 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 53/146 (36%), Gaps = 18/146 (12%)

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           K+ E ++P   P      +L +       +LD F GSG     A K   +   +++    
Sbjct: 5   KEFENVYP---PSEDSMLLLRAVKYAKGEVLDMFTGSGIIAINAAKTAHNVTAVDINPFA 61

Query: 258 IDIATKR-----IASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNI 312
           ID A K      I +++ + +   + L  K+      F+++       PG+       + 
Sbjct: 62  IDAARKNSKINGIKNIKFIKSDLFSELENKK------FDVIYANPPYLPGK----KAKDW 111

Query: 313 SATVCADGTLISGTELGSIHRVGAKV 338
                  G   +   L  IH +G  +
Sbjct: 112 IDYALNGGKDGNEIILRLIHNLGKHL 137


>gi|260557566|ref|ZP_05829781.1| tRNA (guanine-N(7)-)-methyltransferase [Acinetobacter baumannii
           ATCC 19606]
 gi|260409192|gb|EEX02495.1| tRNA (guanine-N(7)-)-methyltransferase [Acinetobacter baumannii
           ATCC 19606]
          Length = 246

 Score = 37.7 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 23/125 (18%)

Query: 18  EWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           E K+ +++  ++I VL ++P  S++ +            QLY P         D W K  
Sbjct: 119 ELKNLRVLDADAIQVLREMPDNSINCV------------QLYFP---------DPWQKKR 157

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            F+         +    + L+  GT      +         + +    + N      S P
Sbjct: 158 HFKR-RFVMHERMQLVEQKLELGGTFHAATDWEPYAEWMLDVLDNRPNLENLAGKGNSYP 216

Query: 137 MPNFR 141
            P +R
Sbjct: 217 RPEWR 221


>gi|255573584|ref|XP_002527716.1| conserved hypothetical protein [Ricinus communis]
 gi|223532906|gb|EEF34675.1| conserved hypothetical protein [Ricinus communis]
          Length = 291

 Score = 37.7 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 211 ALLSRILVSSTKPGDII----LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            L  R +     P D +    LD   GSG SG    +    +IG+++ +  +DIA +R
Sbjct: 35  KLSERAVELLALPEDGVPRLLLDIGCGSGLSGETLTENGHQWIGLDISRSMLDIALER 92


>gi|188582345|ref|YP_001925790.1| hypothetical protein Mpop_3100 [Methylobacterium populi BJ001]
 gi|179345843|gb|ACB81255.1| conserved hypothetical protein [Methylobacterium populi BJ001]
          Length = 1070

 Score = 37.7 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 47/160 (29%), Gaps = 27/160 (16%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYN---------------LQLNGQLYRPDH------ 62
             G+S   L  +   S+DL+  DPP+                L+L  +   PD+      
Sbjct: 658 YCGSSTD-LTNVSDASLDLVITDPPFGGLLHYSELSDFFYVWLRLALKDKYPDYFRAEYT 716

Query: 63  --SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNIFRIGTM-- 117
             SL      + +   +   Y            R LKP+G L +      +   +  +  
Sbjct: 717 PKSLEAVANKAREPEDADGFYQRLLTQCWREAHRALKPSGILAFTFHHSEDEPWVAVLES 776

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
           L    +++      R      +         ++ +     
Sbjct: 777 LFEAGYYLEATYPIRSDETKGDGEFGSKTIEYDIIHVCRK 816


>gi|115449305|ref|NP_001048432.1| Os02g0804300 [Oryza sativa Japonica Group]
 gi|47497377|dbj|BAD19415.1| putative methyltransferase [Oryza sativa Japonica Group]
 gi|51090596|dbj|BAD36048.1| putative methyltransferase [Oryza sativa Japonica Group]
 gi|113537963|dbj|BAF10346.1| Os02g0804300 [Oryza sativa Japonica Group]
 gi|218191765|gb|EEC74192.1| hypothetical protein OsI_09335 [Oryza sativa Indica Group]
 gi|222623870|gb|EEE58002.1| hypothetical protein OsJ_08769 [Oryza sativa Japonica Group]
          Length = 295

 Score = 37.7 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 9/86 (10%)

Query: 188 ICSGSERLRNKDGEKLHPT-----QKPEALLSRILVSSTKPGDII----LDPFFGSGTSG 238
           + +  E   N+   + + T     +    +  R L     P D +    LD   GSG SG
Sbjct: 6   VQAPPEIFYNESEARKYTTSSRIIEIQSRITERALELLALPNDGVPKLLLDIGCGSGLSG 65

Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKR 264
               +    +IG ++ +  +D+A +R
Sbjct: 66  ETLTEQGHHWIGYDISKSMLDVALER 91


>gi|34496439|ref|NP_900654.1| ribosomal protein L11 methyltransferase [Chromobacterium violaceum
           ATCC 12472]
 gi|38605125|sp|P60091|PRMA_CHRVO RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|34102292|gb|AAQ58658.1| ribosomal protein L11 methyltransferase [Chromobacterium violaceum
           ATCC 12472]
          Length = 298

 Score = 37.7 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  + L    +  + +LD   GSG     A KL   S +GI++ Q  +
Sbjct: 143 GTGSHPTTR---LCLQWLDKQLQGNESVLDYGCGSGILAIAALKLGAASAVGIDIDQQAV 199

Query: 259 DIATK 263
             +  
Sbjct: 200 RASQD 204


>gi|307595611|ref|YP_003901928.1| methyltransferase [Vulcanisaeta distributa DSM 14429]
 gi|307550812|gb|ADN50877.1| methyltransferase small [Vulcanisaeta distributa DSM 14429]
          Length = 214

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 227 ILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           +LD   G+G     A  +  R  I +++  + + IA +
Sbjct: 60  VLDLGCGTGRFAIAAALMGARQVICVDIDPEALTIAKE 97


>gi|300712129|ref|YP_003737943.1| tRNA methyltransferase complex GCD14 subunit [Halalkalicoccus
           jeotgali B3]
 gi|299125812|gb|ADJ16151.1| tRNA methyltransferase complex GCD14 subunit [Halalkalicoccus
           jeotgali B3]
          Length = 237

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 43/121 (35%), Gaps = 26/121 (21%)

Query: 225 DIILDPFFGSGTSGAVAKKLRR---SFIGIEMKQDYIDIATK--RIASVQPLGNIELTVL 279
           D +LD   G+G +G +A  + R     I  E   ++ ++A +  R+A V     +    L
Sbjct: 85  DRVLD--AGTG-TGVLATYMGRVGAEVITYERNPEFAEVARENVRLAGVTDRVEVRTGDL 141

Query: 280 TGK-------------RTEPRV---AFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
           T +                P V   A  LLV  G +        A   +  T    GTL 
Sbjct: 142 TNEADPSGFDVLTLDTEDAPDVVARAGELLVPGGFLAVYSPFIEATREVVETAR--GTLS 199

Query: 324 S 324
            
Sbjct: 200 D 200


>gi|90407643|ref|ZP_01215823.1| putative oxidoreductase [Psychromonas sp. CNPT3]
 gi|90311234|gb|EAS39339.1| putative oxidoreductase [Psychromonas sp. CNPT3]
          Length = 747

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 20/108 (18%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           K + I+ + I  L+    ++ DLIF DPP            +   +  V D  D   S  
Sbjct: 634 KHEFIQQDCIKWLQH-SHETYDLIFIDPP---------TFSNSKRMKDVFDVQDDHVSL- 682

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
                    L +    L P G +    +  N       ++ L F+I +
Sbjct: 683 ---------LTSASERLNPEGEIIFSNNKRNFKLDMEAIKALGFYIKD 721


>gi|297793249|ref|XP_002864509.1| hypothetical protein ARALYDRAFT_495827 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297310344|gb|EFH40768.1| hypothetical protein ARALYDRAFT_495827 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 289

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 211 ALLSRILVSSTKPGDII----LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            L  R L     P D +    LD   GSG SG    +    +IG+++    +++A +R
Sbjct: 35  KLSERALELLALPEDGVPRFLLDIGCGSGLSGETLSENGHHWIGLDISASMLNVAVER 92


>gi|295398772|ref|ZP_06808781.1| RsmD family RNA methyltransferase [Aerococcus viridans ATCC 11563]
 gi|294972986|gb|EFG48804.1| RsmD family RNA methyltransferase [Aerococcus viridans ATCC 11563]
          Length = 188

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 53/149 (35%), Gaps = 18/149 (12%)

Query: 191 GSERLRNKDGEKLHPTQ-KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSF 248
           G  RL+   G+   PT  K +  L  I+         +LD + GSG  G  A        
Sbjct: 9   GKHRLKAVPGDNTRPTTDKIKESLFNIIGPYFDEETRVLDFYAGSGALGIEAISRGAAVV 68

Query: 249 IGIEMKQDYIDIATKRIASVQ-------PLGNIELTVLTGKRTEPRVAFNLLVERGLIQP 301
            G E  +       + +A+V+         G+    +   ++ +  + F+L+     + P
Sbjct: 69  YGFEKNRQAQATIKENVAAVRIEDQYVLKAGDNRKAIQQLRQADKDLQFDLV----FLDP 124

Query: 302 ---GQILTNAQGNISA--TVCADGTLISG 325
              GQ L +      A   +  D  LI  
Sbjct: 125 PYKGQQLEDVINGFLADNWLAPDARLICE 153


>gi|241896317|ref|ZP_04783613.1| methyltransferase [Weissella paramesenteroides ATCC 33313]
 gi|241870297|gb|EER74048.1| methyltransferase [Weissella paramesenteroides ATCC 33313]
          Length = 262

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 44/120 (36%), Gaps = 15/120 (12%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           M+Q+ S+ +N+  + I     +I+  +   +   +   S D++ ++PPY    N      
Sbjct: 93  MAQR-SVMMNDLTDKI-----RIMNADMRDIFNDIRPGSADMVVSNPPYFSIDNEHTVMH 146

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
           ++                  Y A         +++LK     +++     +F I   LQ 
Sbjct: 147 ENKHYAIARHELMADLDLVTYTA---------KKLLKNKAHFFMVHRPDRLFEILESLQK 197


>gi|302832169|ref|XP_002947649.1| hypothetical protein VOLCADRAFT_103561 [Volvox carteri f.
           nagariensis]
 gi|300266997|gb|EFJ51182.1| hypothetical protein VOLCADRAFT_103561 [Volvox carteri f.
           nagariensis]
          Length = 289

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 212 LLSRILVSSTKPGDII----LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           L  R L     P D I    LD   GSG SG    +    ++G+++ +  +D+A +R
Sbjct: 38  LTERALELLALPQDGIPRLLLDLGCGSGLSGETLSEAGHMWLGVDISEAMLDVAVER 94


>gi|294787219|ref|ZP_06752472.1| putative methyltransferase [Parascardovia denticolens F0305]
 gi|315227233|ref|ZP_07869020.1| phage methyltransferase [Parascardovia denticolens DSM 10105]
 gi|294484575|gb|EFG32210.1| putative methyltransferase [Parascardovia denticolens F0305]
 gi|315119683|gb|EFT82816.1| phage methyltransferase [Parascardovia denticolens DSM 10105]
          Length = 183

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 19/112 (16%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
            P    DL+  DPP         +         +   + +  +   + ++ +     C R
Sbjct: 64  FPDNHFDLVVFDPP---------HLIWAGPKSFMKAQYGQLPA--DWRSYMKDGFDECLR 112

Query: 95  VLKPNGTLWVIGSYHNIFRIGT--------MLQNLNFWILNDIVWRKSNPMP 138
           VLK  G L    S   I             +L + +     ++  ++ NP+P
Sbjct: 113 VLKNTGILLFKWSQAQIHLADVLAVLGRTPILGDKHASTRWEVFLKQPNPLP 164


>gi|284176350|ref|YP_003406626.1| hypothetical protein Htur_5066 [Haloterrigena turkmenica DSM 5511]
 gi|284018007|gb|ADB63953.1| hypothetical protein Htur_5066 [Haloterrigena turkmenica DSM 5511]
          Length = 207

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 25/48 (52%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
           + E +D     ++I V E+    S D +  DPPY++  + + Y  +++
Sbjct: 66  LDEDRDADYHFDAIEVRERFGENSFDTVIMDPPYSVIQSRKRYDGEYA 113


>gi|255291965|dbj|BAH90451.1| conserved hypothetical protein [uncultured bacterium]
          Length = 289

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 5/79 (6%)

Query: 209 PEALLSR----ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            E +L R    I  S       + DPF G G+    A++L     G ++    + I    
Sbjct: 96  NEEVLERARAEIRRSCGGELPPVYDPFSGGGSIPLEAQRLGLPAYGSDLNPVAVMIGKA- 154

Query: 265 IASVQPLGNIELTVLTGKR 283
           +  + P       +  G +
Sbjct: 155 MIEIPPKFKDMSPIHPGIK 173


>gi|182682470|ref|YP_001830630.1| hypothetical protein XfasM23_1957 [Xylella fastidiosa M23]
 gi|182632580|gb|ACB93356.1| conserved hypothetical protein [Xylella fastidiosa M23]
 gi|307578752|gb|ADN62721.1| hypothetical protein XFLM_03735 [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 282

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 26  GNSISVLEKLPAKSVDLIFADPP 48
           G+    +E LP  SVD I  DPP
Sbjct: 190 GDIEQAIEDLPDASVDAIVHDPP 212


>gi|28199724|ref|NP_780038.1| hypothetical protein PD1855 [Xylella fastidiosa Temecula1]
 gi|28057845|gb|AAO29687.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
          Length = 286

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 26  GNSISVLEKLPAKSVDLIFADPP 48
           G+    +E LP  SVD I  DPP
Sbjct: 194 GDIEQAIEDLPDASVDAIVHDPP 216


>gi|325662165|ref|ZP_08150783.1| 50S ribosomal protein L11 methyltransferase [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325471614|gb|EGC74834.1| 50S ribosomal protein L11 methyltransferase [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 318

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 62/175 (35%), Gaps = 18/175 (10%)

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
           ++  E L W +   +     +  D L   + +     D    I           G  +H 
Sbjct: 100 ESQTEDLDWVNNWKQYFHQFYVDDILIIPSWEEVKPEDEDKMIIHID--PGTAFGTGMHE 157

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF-IGIEMKQDYIDIATKR 264
           T     L  R L         ILD   GSG  G +A K   ++ +G ++    ID   + 
Sbjct: 158 TT---QLCIRQLKKHVTKETRILDVGCGSGILGMLALKFGAAYSVGTDLDPCAIDATYE- 213

Query: 265 IASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
                   N+E+  +T  R +  V    +++   +Q  ++  +    + A + AD
Sbjct: 214 --------NMEVNGIT--RDQYEVMIGNIIDDKEVQD-KVGYDKYDIVVANILAD 257


>gi|325207478|gb|ADZ02930.1| ribosomal protein L11 methyltransferase [Neisseria meningitidis
           NZ-05/33]
          Length = 330

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  + L +  K G+ +LD   GSG     A KL   S +G+++ +  +
Sbjct: 178 GTGSHPTTR---LCLKWLDTQLKNGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAV 234

Query: 259 DIATK 263
                
Sbjct: 235 RAGRD 239


>gi|325201498|gb|ADY96952.1| ribosomal protein L11 methyltransferase [Neisseria meningitidis
           M01-240149]
          Length = 295

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  + L +  K G+ +LD   GSG     A KL   S +G+++ +  +
Sbjct: 143 GTGSHPTTR---LCLKWLDTQLKNGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAV 199

Query: 259 DIATK 263
                
Sbjct: 200 RAGRD 204


>gi|325295579|ref|YP_004282093.1| hypothetical protein Dester_1403 [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325066027|gb|ADY74034.1| protein of unknown function Met10 [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 399

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKL--PAKSVDLIFADPP 48
           N   N + + K + +KG++  VL+++    +  D I  DPP
Sbjct: 262 NAKLNGVAD-KFQFVKGDAFKVLKRMQQEGEKFDSIVIDPP 301


>gi|313669084|ref|YP_004049368.1| ribosomal protein L11 methyltransferase [Neisseria lactamica
           ST-640]
 gi|313006546|emb|CBN88010.1| putative ribosomal protein L11 methyltransferase [Neisseria
           lactamica 020-06]
          Length = 295

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  + L +  K G+ +LD   GSG     A KL   S +G+++ +  +
Sbjct: 143 GTGSHPTTR---LCLKWLDTQLKNGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAV 199

Query: 259 DIATK 263
                
Sbjct: 200 RAGRD 204


>gi|308389961|gb|ADO32281.1| putative ribosomal protein L11 methyltransferase [Neisseria
           meningitidis alpha710]
          Length = 330

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  + L +  K G+ +LD   GSG     A KL   S +G+++ +  +
Sbjct: 178 GTGSHPTTR---LCLKWLDTQLKNGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAV 234

Query: 259 DIATK 263
                
Sbjct: 235 RAGRD 239


>gi|307637701|gb|ADN80151.1| Cyclopropane-fatty-acyl-phospholipid synthase [Helicobacter pylori
           908]
          Length = 389

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 51/307 (16%), Positives = 98/307 (31%), Gaps = 29/307 (9%)

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM----LQNLNFWILNDIVWRKSNPMPNF 140
            + W     +V+  + +++  G +   F +         ++   +   I     + M + 
Sbjct: 11  FKQWKNGDYQVVFWDNSVYRNGEHSPKFTLKIHRPLKFSDIKKDMSLTIAEAYMDGMIDI 70

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS---------DWLIPICSG 191
            G   +  H   +  +     K  +               +           WL    S 
Sbjct: 71  EGSMDEVMHSLYLQTNYEHLHKHDSAKAVQKPLKESSNISKHYDLGNDFYSIWLDETLSY 130

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG-TSGAVAKKLRRSFIG 250
           S     KD + LH  Q  + L   +     K G+ +LD   G G  S   A++     +G
Sbjct: 131 SCAYFKKDDDTLHAAQL-QKLDHTLKKLHLKQGEKLLDIGCGWGYLSIKAAQEYGAEVMG 189

Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV-AFNLLVERGLI-QPGQILTNA 308
           I +  +    A KR+  +     + + +L  +  + R+  F+ +V  G+    G+     
Sbjct: 190 ITISSEQYKQANKRVQELGLEDKVTIKLLNYQDLDGRLYRFDKVVSVGMFEHVGKDNLPF 249

Query: 309 QGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
                  V   G +        +H +     G    N W   Y    G L S   LR ++
Sbjct: 250 YFKKVKEVLKTGGMFL------LHSILCCFEGKT--NAWVDKYIFPGGYLPS---LREVM 298

Query: 369 RKELYNC 375
              +  C
Sbjct: 299 -SVMSEC 304


>gi|304388400|ref|ZP_07370509.1| ribosomal protein L11 methyltransferase [Neisseria meningitidis
           ATCC 13091]
 gi|304337612|gb|EFM03772.1| ribosomal protein L11 methyltransferase [Neisseria meningitidis
           ATCC 13091]
          Length = 295

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  + L +  K G+ +LD   GSG     A KL   S +G+++ +  +
Sbjct: 143 GTGSHPTTR---LCLKWLDTQLKNGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAV 199

Query: 259 DIATK 263
                
Sbjct: 200 RAGRD 204


>gi|293608669|ref|ZP_06690972.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829242|gb|EFF87604.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 246

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 23/125 (18%)

Query: 18  EWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           E K+ +++  ++I VL ++P  S++ +            QLY P         D W K  
Sbjct: 119 ELKNLRVLDADAIQVLREMPDNSINCV------------QLYFP---------DPWQKKR 157

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            F+         +    + L+  GT      +         + +    + N      S P
Sbjct: 158 HFKR-RFVIHERMQLVEQKLELGGTFHAATDWEPYAEWMLDILDNRPDLENLAGKGNSYP 216

Query: 137 MPNFR 141
            P +R
Sbjct: 217 RPEWR 221


>gi|254672652|emb|CBA06466.1| ribosomal protein L11 methyltransferase [Neisseria meningitidis
           alpha275]
          Length = 262

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  + L +  K G+ +LD   GSG     A KL   S +G+++ +  +
Sbjct: 110 GTGSHPTTR---LCLKWLDTQLKNGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAV 166

Query: 259 DIATK 263
                
Sbjct: 167 RAGRD 171


>gi|254804314|ref|YP_003082535.1| ribosomal protein L11 methyltransferase [Neisseria meningitidis
           alpha14]
 gi|254667856|emb|CBA03901.1| ribosomal protein L11 methyltransferase [Neisseria meningitidis
           alpha14]
          Length = 330

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  + L +  K G+ +LD   GSG     A KL   S +G+++ +  +
Sbjct: 178 GTGSHPTTR---LCLKWLDTQLKNGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAV 234

Query: 259 DIATK 263
                
Sbjct: 235 RAGRD 239


>gi|240015800|ref|ZP_04722340.1| ribosomal protein L11 methyltransferase [Neisseria gonorrhoeae
           FA6140]
 gi|240114890|ref|ZP_04728952.1| ribosomal protein L11 methyltransferase [Neisseria gonorrhoeae
           PID18]
 gi|260441294|ref|ZP_05795110.1| ribosomal protein L11 methyltransferase [Neisseria gonorrhoeae
           DGI2]
 gi|268600547|ref|ZP_06134714.1| ribosomal protein L11 methyltransferase [Neisseria gonorrhoeae
           PID18]
 gi|268584678|gb|EEZ49354.1| ribosomal protein L11 methyltransferase [Neisseria gonorrhoeae
           PID18]
          Length = 295

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  + L +  K G+ +LD   GSG     A KL   S +G+++ +  +
Sbjct: 143 GTGSHPTTR---LCLKWLDTQLKNGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAV 199

Query: 259 DIATK 263
                
Sbjct: 200 RAGRD 204


>gi|240013355|ref|ZP_04720268.1| ribosomal protein L11 methyltransferase [Neisseria gonorrhoeae
           DGI18]
 gi|240079937|ref|ZP_04724480.1| ribosomal protein L11 methyltransferase [Neisseria gonorrhoeae
           FA19]
 gi|240112144|ref|ZP_04726634.1| ribosomal protein L11 methyltransferase [Neisseria gonorrhoeae
           MS11]
 gi|240117094|ref|ZP_04731156.1| ribosomal protein L11 methyltransferase [Neisseria gonorrhoeae
           PID1]
 gi|240120428|ref|ZP_04733390.1| ribosomal protein L11 methyltransferase [Neisseria gonorrhoeae
           PID24-1]
 gi|240122730|ref|ZP_04735686.1| ribosomal protein L11 methyltransferase [Neisseria gonorrhoeae
           PID332]
 gi|240124921|ref|ZP_04737807.1| ribosomal protein L11 methyltransferase [Neisseria gonorrhoeae
           SK-92-679]
 gi|268596077|ref|ZP_06130244.1| ribosomal protein L11 methyltransferase [Neisseria gonorrhoeae
           FA19]
 gi|268598202|ref|ZP_06132369.1| ribosomal protein L11 methyltransferase [Neisseria gonorrhoeae
           MS11]
 gi|268602780|ref|ZP_06136947.1| ribosomal protein L11 methyltransferase [Neisseria gonorrhoeae
           PID1]
 gi|268681329|ref|ZP_06148191.1| ribosomal protein L11 methyltransferase [Neisseria gonorrhoeae
           PID332]
 gi|268683500|ref|ZP_06150362.1| ribosomal protein L11 methyltransferase [Neisseria gonorrhoeae
           SK-92-679]
 gi|268549865|gb|EEZ44884.1| ribosomal protein L11 methyltransferase [Neisseria gonorrhoeae
           FA19]
 gi|268582333|gb|EEZ47009.1| ribosomal protein L11 methyltransferase [Neisseria gonorrhoeae
           MS11]
 gi|268586911|gb|EEZ51587.1| ribosomal protein L11 methyltransferase [Neisseria gonorrhoeae
           PID1]
 gi|268621613|gb|EEZ54013.1| ribosomal protein L11 methyltransferase [Neisseria gonorrhoeae
           PID332]
 gi|268623784|gb|EEZ56184.1| ribosomal protein L11 methyltransferase [Neisseria gonorrhoeae
           SK-92-679]
          Length = 295

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  + L +  K G+ +LD   GSG     A KL   S +G+++ +  +
Sbjct: 143 GTGSHPTTR---LCLKWLDTQLKNGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAV 199

Query: 259 DIATK 263
                
Sbjct: 200 RAGRD 204


>gi|261400540|ref|ZP_05986665.1| ribosomal protein L11 methyltransferase [Neisseria lactamica ATCC
           23970]
 gi|269209607|gb|EEZ76062.1| ribosomal protein L11 methyltransferase [Neisseria lactamica ATCC
           23970]
          Length = 245

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  + L +  K G+ +LD   GSG     A KL   S +G+++ +  +
Sbjct: 93  GTGSHPTTR---LCLKWLDTQLKNGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAV 149

Query: 259 DIATK 263
                
Sbjct: 150 RAGRD 154


>gi|194097642|ref|YP_002000680.1| ribosomal protein L11 methyltransferase [Neisseria gonorrhoeae
           NCCP11945]
 gi|291044650|ref|ZP_06570359.1| ribosomal protein L11 methyltransferase [Neisseria gonorrhoeae
           DGI2]
 gi|193932932|gb|ACF28756.1| ribosomal protein L11 methyltransferase [Neisseria gonorrhoeae
           NCCP11945]
 gi|291011544|gb|EFE03540.1| ribosomal protein L11 methyltransferase [Neisseria gonorrhoeae
           DGI2]
          Length = 311

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  + L +  K G+ +LD   GSG     A KL   S +G+++ +  +
Sbjct: 159 GTGSHPTTR---LCLKWLDTQLKNGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAV 215

Query: 259 DIATK 263
                
Sbjct: 216 RAGRD 220


>gi|153826312|ref|ZP_01978979.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|149739980|gb|EDM54159.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
          Length = 199

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 1   MSQKNSLAINENQNSIFEWK---DKIIKGNSISVLEKLPAKSVDLIFADPPY 49
           M + N LA  + + ++   K    ++I  ++++ L +   K  D++F DPP+
Sbjct: 87  MLELNPLAFQQLKTNVQSLKAENIELIHTDALAFLRQ-SGKPYDMVFIDPPF 137


>gi|146313331|ref|YP_001178405.1| ribosomal protein L11 methyltransferase [Enterobacter sp. 638]
 gi|166989897|sp|A4WF74|PRMA_ENT38 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|145320207|gb|ABP62354.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [Enterobacter sp. 638]
          Length = 293

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 47/144 (32%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    +L  + 
Sbjct: 95  WEREWMDNFHPMQFGKRLWICPSWRDVPDPNAVNVMLDPGLAFGTGTHPTT---SLCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG       K      IGI++    I  +     + Q  G  +
Sbjct: 152 LDGLDLEGKTVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRD---NAQRNGVSD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L     +P +    +V   ++
Sbjct: 209 RLELYLPNDQPDIMKADVVVANIL 232


>gi|81904391|sp|Q9CY45|N6MT2_MOUSE RecName: Full=N(6)-adenine-specific DNA methyltransferase 2
 gi|12846679|dbj|BAB27262.1| unnamed protein product [Mus musculus]
          Length = 214

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 29  ISVLEKLPAKSVDLIFADPPY 49
           + + E++ A S DL+ ADPPY
Sbjct: 124 LELPERIAAHSFDLVVADPPY 144


>gi|308063823|gb|ADO05710.1| cyclopropane fatty acid synthase [Helicobacter pylori Sat464]
          Length = 389

 Score = 37.7 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 51/307 (16%), Positives = 98/307 (31%), Gaps = 29/307 (9%)

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM----LQNLNFWILNDIVWRKSNPMPNF 140
            + W     +V+  + +++  G +   F +         ++   +   I     + + + 
Sbjct: 11  FKQWKNGDYQVVFWDDSVYRNGEHSPKFTLKIHRPLKFSDIKKDMSLTIAEAYMDGVIDI 70

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS---------DWLIPICSG 191
            G   +  H   +  +     K                  +           WL    S 
Sbjct: 71  EGSMDEVMHSLYLQTNYEHLHKHDNAKAIQKPIKESSNISKHYDLGNDFYSIWLDETLSY 130

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG-TSGAVAKKLRRSFIG 250
           S     KD + LH  Q  + L   +     KPG+ +LD   G G  S   A++     +G
Sbjct: 131 SCAYFKKDDDTLHAAQL-QKLDHTLKKLHLKPGEKLLDIGCGWGYLSIKAAQEYGAQVMG 189

Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV-AFNLLVERGLI-QPGQILTNA 308
           I +  +    A KR+  +     + + +L  +  + R+  F+ +V  G+    G+     
Sbjct: 190 ITISSEQYRQANKRVQELGLEDKVTIKLLNYQDLDGRLYRFDKVVSVGMFEHVGKDNLPF 249

Query: 309 QGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
                  V   G +        +H +     G    N W   Y    G L S   LR ++
Sbjct: 250 YFKKVKEVLKRGGMFL------LHSILCCFEGKT--NAWVDKYIFPGGYLPS---LREVM 298

Query: 369 RKELYNC 375
              +  C
Sbjct: 299 -SVMSEC 304


>gi|308062490|gb|ADO04378.1| adenine-specific methyltransferase [Helicobacter pylori Cuz20]
          Length = 329

 Score = 37.7 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 52/130 (40%), Gaps = 12/130 (9%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
           +  L +      +    +++ + ++  ++EK+     D+++ DPPYN +  G  Y   ++
Sbjct: 171 QKELILKGADFDLSSNANEVYQQDASELIEKISG---DILYLDPPYNARQYGANYHLLNT 227

Query: 64  LVDAVTDSWDKFSSFEAYDA--FT-RAWLLACRRVLKPNGTL-WVIGSYHNIF-----RI 114
           +      +    +   +Y    F  RA +L     L       ++  SY+N        I
Sbjct: 228 IAAYTPFAPKGKTGLPSYQKSSFCSRAKILNAFENLIKTARFKYIFLSYNNEGLMGETEI 287

Query: 115 GTMLQNLNFW 124
           G +L+    +
Sbjct: 288 GNILKKYGTY 297


>gi|237745766|ref|ZP_04576246.1| modification methylase [Oxalobacter formigenes HOxBLS]
 gi|229377117|gb|EEO27208.1| modification methylase [Oxalobacter formigenes HOxBLS]
          Length = 313

 Score = 37.7 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 20/51 (39%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           + K + +    K    S+DL+ + PPY   L    Y    SL     D  D
Sbjct: 208 LYKEDVLENFLKFNDNSIDLLISSPPYGDNLTTVTYGQFSSLSLYWIDPND 258



 Score = 37.3 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 4/73 (5%)

Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI--ILDPFFGSGTSG--AVAK 242
            I     +  +  G  L+P      +  ++L    +  DI  I DPF GSGT+   A + 
Sbjct: 4   DIAFSDYKKDDIHGVALYPATMVAPVQKKVLKYLFEHADINSIFDPFHGSGTALYEAASL 63

Query: 243 KLRRSFIGIEMKQ 255
                  G ++  
Sbjct: 64  DNNIELYGCDINP 76


>gi|229592006|ref|YP_002874125.1| 23S rRNA m(2)G2445 methyltransferase [Pseudomonas fluorescens
           SBW25]
 gi|229363872|emb|CAY51346.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 762

 Score = 37.7 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
           F  K+++ +G+ I+ LE    +  DLIF DPP
Sbjct: 649 FSDKNRLEQGDVIAWLEASRDE-FDLIFIDPP 679


>gi|219119696|ref|XP_002180602.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408075|gb|EEC48010.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 839

 Score = 37.7 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 17  FEWKDKIIKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
           F+ +   I G+    L +L    +  D++  DPP      G   +   S+ + + +
Sbjct: 713 FDERHDAIYGDCFDWLSRLAKRGEKYDIVILDPP--SSSVGGRKKKRWSIKNDMDE 766


>gi|148658155|ref|YP_001278360.1| hypothetical protein RoseRS_4066 [Roseiflexus sp. RS-1]
 gi|148570265|gb|ABQ92410.1| hypothetical protein RoseRS_4066 [Roseiflexus sp. RS-1]
          Length = 281

 Score = 37.7 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 43/144 (29%), Gaps = 28/144 (19%)

Query: 27  NSISVLEKLP--AKSVDLIFADPPY-------NLQLNGQ-----LYRPDHSLVDAVTDSW 72
           +       LP     +D +  DPPY       N+   G       +R  +S    V DS 
Sbjct: 131 DC----RNLPYRDGEIDCVVLDPPYMESLLRKNVDHFGGSGTYAAFRDSYSNGKVVGDSE 186

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH--------NIFRIGTMLQNLNFW 124
            K+   +A             RVL+  G L V                 I    +   F 
Sbjct: 187 AKW--HDAVLDLYYKAADEAYRVLRKRGILIVKCQDEVSAGKQRLTHVEIINEYERKGFV 244

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNA 148
           + +  V  + N     R  R  +A
Sbjct: 245 VKDLFVVVRKNSASVSRIVRQLHA 268


>gi|56751462|ref|YP_172163.1| hypothetical protein syc1453_c [Synechococcus elongatus PCC 6301]
 gi|81298857|ref|YP_399065.1| ubiquinone/menaquinone biosynthesis methylase-like protein
           [Synechococcus elongatus PCC 7942]
 gi|56686421|dbj|BAD79643.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81167738|gb|ABB56078.1| Methylase involved in ubiquinone/menaquinone biosynthesis-like
           [Synechococcus elongatus PCC 7942]
          Length = 447

 Score = 37.7 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 13/135 (9%)

Query: 205 PTQKPEALLSRILVSSTKPGD---------IILDPFFGSG--TSGAVAKKLRRSFIGIEM 253
           P +   AL    + S+    D          ILD   GSG  T            IG+++
Sbjct: 30  PKENYGALAIHDIRSAFYRRDRSLKATEGACILDVGCGSGYKTLMLALANPGAEIIGVDL 89

Query: 254 KQDYIDIATKRIASVQPLGNIELTVLT-GKRTEPRVAFNLLVERGLIQPGQILTNAQGNI 312
               +++A +R+   Q    ++   L   +  +  +AF+ +    L+        A G +
Sbjct: 90  SLKSVELAQERL-KFQGFPEVKFYALGLDEIGQLEIAFDYINCDELLYFFDDPAAALGQM 148

Query: 313 SATVCADGTLISGTE 327
            A +  DG + +   
Sbjct: 149 KAVLKPDGIIRANLH 163


>gi|328948386|ref|YP_004365723.1| methyltransferase type 11 [Treponema succinifaciens DSM 2489]
 gi|328448710|gb|AEB14426.1| Methyltransferase type 11 [Treponema succinifaciens DSM 2489]
          Length = 244

 Score = 37.7 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 16/111 (14%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N++ E K KI   +     + L   S D + ++PPY    NG   +              
Sbjct: 90  NNLQE-KIKIFCADIKEPFKVLQKNSFDAVVSNPPYIEISNGNTNKT------------- 135

Query: 74  KFSSFEAYDAFT--RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
           K  S   ++ F      +     +LK +G  ++I     + +I ++L+   
Sbjct: 136 KPLSVARHEVFCTLEDVIKTAYALLKSHGKFFMIHKPFRLPQIFSLLEKYK 186


>gi|317177953|dbj|BAJ55742.1| Type II modification enzyme M.HpyI [Helicobacter pylori F16]
          Length = 329

 Score = 37.7 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 52/130 (40%), Gaps = 12/130 (9%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
           +  L +      +    +++ + ++  ++EK+     D+++ DPPYN +  G  Y   ++
Sbjct: 171 QKELLLKGADFDLSSNANEVYQQDASELIEKISG---DILYLDPPYNARQYGANYHLLNT 227

Query: 64  LVDAVTDSWDKFSSFEAYDA--FT-RAWLLACRRVLKPNGTL-WVIGSYHNIF-----RI 114
           +      +    +   +Y    F  RA +L     L       ++  SY+N        I
Sbjct: 228 IAAYTPFAPKGKTGLPSYQKSSFCSRAKILNAFENLIKTARFKYIFLSYNNEGLMGETEI 287

Query: 115 GTMLQNLNFW 124
           G +L+    +
Sbjct: 288 GNILKKYGTY 297


>gi|315924413|ref|ZP_07920635.1| ribosomal protein L11 methyltransferase [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622292|gb|EFV02251.1| ribosomal protein L11 methyltransferase [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 315

 Score = 37.7 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 3/98 (3%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSSTKPGD 225
           +       + + ++  W        E + N D      T   E   L    L     P D
Sbjct: 117 FYKPTKIGDKIVIKPTWEPYTAQAGEMIVNMDPGMAFGTGTHETTQLCVLALEKYLHPDD 176

Query: 226 IILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIAT 262
           ++ D   GSG    VA KL  +  +G++     +D A 
Sbjct: 177 LVYDVGCGSGILSIVAGKLGAQKVVGVDFDPVAVDAAR 214


>gi|168186646|ref|ZP_02621281.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           C str. Eklund]
 gi|169295463|gb|EDS77596.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           C str. Eklund]
          Length = 450

 Score = 37.7 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 6/89 (6%)

Query: 206 TQKPEALLSRILV-SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           T+  EAL S +          ++ D + G+GT G +A       IGIE+ ++ +  A + 
Sbjct: 289 TKGAEALYSIVREFMGDAKSKVVFDLYCGTGTIGQIAAHNAEKVIGIELIEEAVKAANEN 348

Query: 265 -----IASVQPLGNIELTVLTGKRTEPRV 288
                + + + L      V+   + +P +
Sbjct: 349 AKLNGLTNCEFLAGDVAKVIKDIKVKPDI 377


>gi|156974619|ref|YP_001445526.1| 23S rRNA m(2)G2445 methyltransferase [Vibrio harveyi ATCC BAA-1116]
 gi|238686802|sp|A7N0M8|RLML_VIBHB RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|156526213|gb|ABU71299.1| hypothetical protein VIBHAR_02337 [Vibrio harveyi ATCC BAA-1116]
          Length = 707

 Score = 37.7 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 41/130 (31%), Gaps = 22/130 (16%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + +  + + +  LE    +  DLIF DPP         +     +  +     D      
Sbjct: 594 QHRFEQADCLQWLENAKGEY-DLIFIDPP--------TFSNSKRMETSFDVQRDHIK--- 641

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
                    +   +R+L+  G +    +  +       L  L     N  +  ++ P+  
Sbjct: 642 --------LMTNLKRLLRAGGAIVFSNNKRHFKMDEAGLAELGLKAQN--ISSQTLPLDF 691

Query: 140 FRGRRFQNAH 149
            R ++  N  
Sbjct: 692 SRNKQIHNCW 701


>gi|85858414|ref|YP_460616.1| ribosomal protein L11 methyltransferase [Syntrophus aciditrophicus
           SB]
 gi|85721505|gb|ABC76448.1| ribosomal protein L11 methyltransferase [Syntrophus aciditrophicus
           SB]
          Length = 319

 Score = 37.7 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 63/178 (35%), Gaps = 13/178 (7%)

Query: 159 PKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD-----GEKLHPTQKP--EA 211
           P        Y      + ++ ++  W      GS+ +   D     G   H + +   E 
Sbjct: 108 PDWGEQWKKYFKPLRVSRNIVIKPTWERYTPLGSDIVIEIDPGMAFGTGQHASTRMCLEV 167

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQP 270
           L   IL   +     +LD   G+G  G  + KL     + +++     +IA + IA    
Sbjct: 168 LEDLILTRRSPEPLNVLDVGTGTGILGIASAKLGAERVLCVDIDPKATEIAKENIAINH- 226

Query: 271 LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTEL 328
                ++V   + +  +  +NL+V         +L   +  + + +   G LI    +
Sbjct: 227 -VEDRVSVRQEEISTLKGTYNLIVANLT---ANLLIKLRKKLISLLRPGGYLILSGII 280


>gi|312127403|ref|YP_003992277.1| 50S ribosomal protein L11 methyltransferase [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777422|gb|ADQ06908.1| ribosomal protein L11 methyltransferase [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 304

 Score = 37.7 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 44/120 (36%), Gaps = 11/120 (9%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKK-LRRSFIGIEMKQDYIDIATK--RIASV 268
           L    +    KP   +LD   GSG     AKK L +  + +++ +  + +A +  R+  V
Sbjct: 157 LCLEAIQKYVKPEMDVLDVGTGSGILAIAAKKFLAKRVLAVDIDEVAVKVAEENARLNGV 216

Query: 269 QPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTEL 328
           +        V   +     V  N++          I+     ++   +  +G  IS   +
Sbjct: 217 EIEIKKNDLVEGIEEKFDVVIANIV--------ADIIMRLSRDVKKVLKDNGIFISSGII 268


>gi|270158365|ref|ZP_06187022.1| conserved hypothetical protein [Legionella longbeachae D-4968]
 gi|289163394|ref|YP_003453532.1| conserved AdoMet-dependent methyltransferase with RNA interaction
           domain [Legionella longbeachae NSW150]
 gi|269990390|gb|EEZ96644.1| conserved hypothetical protein [Legionella longbeachae D-4968]
 gi|288856567|emb|CBJ10372.1| putative conserved AdoMet-dependent methyltransferase with RNA
           interaction domain [Legionella longbeachae NSW150]
          Length = 705

 Score = 37.7 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 21/113 (18%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   K + ++ +    ++ +     D+IF DPP         +     + D + 
Sbjct: 582 NFKLNHLDLSKHQFVQSDCREWMK-ITRDRFDVIFLDPP--------SFSNSKRMSDVLD 632

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
              D         A     + A  R+L P+G L+   +    F++   L+   
Sbjct: 633 IQRD--------HALL---VNAAMRLLNPDGILY-FSTNLRQFKLDHTLKEKY 673


>gi|163756357|ref|ZP_02163471.1| hypothetical protein KAOT1_01874 [Kordia algicida OT-1]
 gi|161323709|gb|EDP95044.1| hypothetical protein KAOT1_01874 [Kordia algicida OT-1]
          Length = 430

 Score = 37.7 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 6   SLAINENQNSIFEWKDKIIKGNSISVLEKLPA--KSVDLIFADPP 48
            +A +  + + F  K  II G++   L  L    +  D++  DPP
Sbjct: 294 EIAKSNAKLNEFSGKHNIIVGDAFEELNHLAKAKQKFDIVVIDPP 338


>gi|155371357|ref|YP_001426891.1| hypothetical protein ATCV1_z410R [Acanthocystis turfacea Chlorella
           virus 1]
 gi|155124677|gb|ABT16544.1| hypothetical protein ATCV1_z410R [Acanthocystis turfacea Chlorella
           virus 1]
          Length = 129

 Score = 37.7 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 24/88 (27%), Gaps = 3/88 (3%)

Query: 111 IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
            FR  T L     W    +  R+   +  +RG          +W  P   +   ++++  
Sbjct: 12  WFRFWTWL---GCWYGFWLGCRRGFWLGCWRGFWLGCWRGFWLWGRPWFWSWHRSWHWCG 68

Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNK 198
                        WL           ++
Sbjct: 69  CWPRRGSWHWHRRWLWHWHRRWLWHWHR 96


>gi|150401181|ref|YP_001324947.1| putative methylase [Methanococcus aeolicus Nankai-3]
 gi|150013884|gb|ABR56335.1| putative methylase [Methanococcus aeolicus Nankai-3]
          Length = 208

 Score = 37.7 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 9/105 (8%)

Query: 204 HPTQK-PEALLSRILVSSTKPGDI-ILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDI 260
           HP    P      ++ + T+  +  +LD   G+G     AKK   +  IGI++    I+ 
Sbjct: 17  HPKVYEPAEDSELLINNLTEVKNKSVLDVGTGTGIQAINAKKQGAKKVIGIDINPYAIET 76

Query: 261 ATKRIA----SVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP 301
           A + I         +  IE  +    +TE +  F++++      P
Sbjct: 77  AIENIKLNKLDANKISFIESDLFNSIKTEYK--FDVILFNAPYLP 119


>gi|306819896|ref|ZP_07453549.1| possible rRNA (guanine-N(2)-)-methyltransferase [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
 gi|304552053|gb|EFM39991.1| possible rRNA (guanine-N(2)-)-methyltransferase [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
          Length = 196

 Score = 37.7 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 9   INENQNSIFEWKDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQL 57
           IN N N I + K K  +I  + IS L+    +  D+IFADPPY  +   Q+
Sbjct: 95  INANLNLILDEKSKAELINSDVISFLQT-TNERFDIIFADPPYAYKKTNQI 144


>gi|255066137|ref|ZP_05317992.1| ribosomal protein L11 methyltransferase [Neisseria sicca ATCC
           29256]
 gi|255049682|gb|EET45146.1| ribosomal protein L11 methyltransferase [Neisseria sicca ATCC
           29256]
          Length = 295

 Score = 37.7 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  + L +  K G+ +LD   GSG     A KL   S +G+++ +  I
Sbjct: 143 GTGSHPTTR---LCLKWLDTQLKGGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAI 199

Query: 259 DIATK 263
             +  
Sbjct: 200 RASKD 204


>gi|261364176|ref|ZP_05977059.1| ribosomal protein L11 methyltransferase [Neisseria mucosa ATCC
           25996]
 gi|288567782|gb|EFC89342.1| ribosomal protein L11 methyltransferase [Neisseria mucosa ATCC
           25996]
          Length = 295

 Score = 37.7 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  + L +  K G+ +LD   GSG     A KL   S +G+++ +  I
Sbjct: 143 GTGSHPTTR---LCLKWLDTQLKGGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAI 199

Query: 259 DIATK 263
             +  
Sbjct: 200 RASKD 204


>gi|255657968|ref|ZP_05403377.1| putative protein-L-IsoD(D-D) O-methyltransferase [Mitsuokella
           multacida DSM 20544]
 gi|260850169|gb|EEX70176.1| putative protein-L-IsoD(D-D) O-methyltransferase [Mitsuokella
           multacida DSM 20544]
          Length = 263

 Score = 37.7 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 7/26 (26%), Positives = 16/26 (61%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADP 47
           + +  ++   L++ P  SVD+++ DP
Sbjct: 164 RTVCADAFDYLKEQPDDSVDVVYFDP 189


>gi|154496468|ref|ZP_02035164.1| hypothetical protein BACCAP_00760 [Bacteroides capillosus ATCC
           29799]
 gi|150274551|gb|EDN01628.1| hypothetical protein BACCAP_00760 [Bacteroides capillosus ATCC
           29799]
          Length = 325

 Score = 37.7 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 7/118 (5%)

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF-IGIEMKQDYIDIATKRIASVQPLGNIE 275
           +    K GD +LD   GSG     A  L   +  G+++    + +A +  A +  +G   
Sbjct: 175 VEEFVKDGDQVLDLGCGSGILSIAALCLGAKYAFGVDIDPKAVGVAYEN-AEMNGIGKDI 233

Query: 276 LTVLTGKRTEPRVAFNLLVER--GLIQPG---QILTNAQGNISATVCADGTLISGTEL 328
            TV  G     R     L ER   L+       ++      +   +  DG  +    +
Sbjct: 234 YTVRAGNVLCDRALCAELAERKWNLVLANIVADVIIPLSAQVPGLLAEDGVFLCSGII 291


>gi|332686738|ref|YP_004456512.1| ribosomal RNA small subunit methyltransferase D [Melissococcus
           plutonius ATCC 35311]
 gi|332370747|dbj|BAK21703.1| ribosomal RNA small subunit methyltransferase D [Melissococcus
           plutonius ATCC 35311]
          Length = 187

 Score = 37.7 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 225 DIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            ++LD F GSG     A        + ++   + I I  + +A+V   G   +     ++
Sbjct: 43  GVVLDLFSGSGNLAIEAISRGMEKAVCVDKNYEAIKIIKENVANVDETGKFIIKKSDAQK 102

Query: 284 T 284
            
Sbjct: 103 A 103


>gi|239627757|ref|ZP_04670788.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517903|gb|EEQ57769.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 215

 Score = 37.7 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 26/44 (59%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
           ++  +A    + +  E +  +++G++  +L++L  +S DL+F D
Sbjct: 89  KRIPVARGNFKKAGEEGRITLLEGDADELLKELEGRSFDLVFMD 132


>gi|52144925|ref|YP_081904.1| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus
           E33L]
 gi|51978394|gb|AAU19944.1| probable cyclopropane-fatty-acyl-phospholipid synthase [Bacillus
           cereus E33L]
          Length = 389

 Score = 37.7 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 58/144 (40%), Gaps = 9/144 (6%)

Query: 222 KPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
           + GD +LD   G G    A AK+      G+ + ++      +RI   + L ++    L 
Sbjct: 163 QKGDTLLDIGCGWGELITAAAKQYGVKATGVTLSEEQYAKTLERIEK-ENLTDLVEVNLL 221

Query: 281 GKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSG 340
             R      F+ +V  G+I+   +  +       TV A   L++   +  +H + +   G
Sbjct: 222 DYRDIHERKFDKIVSVGMIE--HVGKDHITEYFETVNA---LLNDGGISVLHCITSPTDG 276

Query: 341 SETCNGWNFWYFEKLGELHSINTL 364
           +   N W   Y    G + +IN L
Sbjct: 277 AT--NSWIEKYIFPGGYVPAINEL 298


>gi|186685082|ref|YP_001868278.1| methyltransferase [Nostoc punctiforme PCC 73102]
 gi|186467534|gb|ACC83335.1| putative methyltransferase [Nostoc punctiforme PCC 73102]
          Length = 182

 Score = 37.7 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
           ++++G+    L+ L  K  D I+ DPPY   L
Sbjct: 94  RVLRGDITQQLKTLSGKQFDRIYFDPPYASGL 125


>gi|299769017|ref|YP_003731043.1| methyltransferase [Acinetobacter sp. DR1]
 gi|298699105|gb|ADI89670.1| methyltransferase [Acinetobacter sp. DR1]
          Length = 222

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 44/140 (31%), Gaps = 22/140 (15%)

Query: 184 WLIPICSGSERL--------RNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGS 234
           WLIP    ++RL         N     +       A+   +L       D ++LD   GS
Sbjct: 40  WLIPPVFPTDRLDDEVIRRIWNDTPYWIFCWASGLAMAQWLLAEPHHVKDKVVLDFGAGS 99

Query: 235 GTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
           G     AK    +  I  ++ Q  + +A  R  ++     +E      K  +  V     
Sbjct: 100 GVVAIAAKMAGAKRVICCDIDQ--VSLAACRENALLNDVELEYLDDLYKAEQVDV----- 152

Query: 294 VERGLIQPGQILTNAQGNIS 313
                +    +L +      
Sbjct: 153 -----LLAADVLYDQCNRFF 167


>gi|15606661|ref|NP_214041.1| O-methyltransferase [Aquifex aeolicus VF5]
 gi|2983883|gb|AAC07435.1| O-methyltransferase [Aquifex aeolicus VF5]
          Length = 212

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFAD 46
           K ++I G++  VLE+   +S D IF D
Sbjct: 111 KIEVIVGDARKVLEEFKKESFDFIFID 137


>gi|13386022|ref|NP_080802.1| N(6)-adenine-specific DNA methyltransferase 2 [Mus musculus]
 gi|12837777|dbj|BAB23947.1| unnamed protein product [Mus musculus]
 gi|12848605|dbj|BAB28017.1| unnamed protein product [Mus musculus]
 gi|30705060|gb|AAH51925.1| N-6 adenine-specific DNA methyltransferase 2 (putative) [Mus
           musculus]
 gi|148704222|gb|EDL36169.1| RIKEN cDNA 2510005D08, isoform CRA_b [Mus musculus]
          Length = 224

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 29  ISVLEKLPAKSVDLIFADPPY 49
           + + E++ A S DL+ ADPPY
Sbjct: 134 LELPERIAAHSFDLVVADPPY 154


>gi|303250538|ref|ZP_07336735.1| 23S rRNA m(2)G2445 methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307251581|ref|ZP_07533488.1| Ribosomal RNA large subunit methyltransferase L [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302650526|gb|EFL80685.1| 23S rRNA m(2)G2445 methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306861045|gb|EFM93051.1| Ribosomal RNA large subunit methyltransferase L [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 712

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 20/91 (21%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +++ + + +  L +   +  +LIF DPP              S    + DSWD       
Sbjct: 599 NRLFQADCLQWLSECR-ERFELIFVDPP------------TFSNSKRMEDSWDVQRDHI- 644

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
                   +   +R+L  +G +    +  + 
Sbjct: 645 ------KLMTQLKRILMADGIIVFSNNKRSF 669


>gi|229051299|ref|ZP_04194817.1| Ribosomal protein L11 methyltransferase [Bacillus cereus AH676]
 gi|229111785|ref|ZP_04241332.1| Ribosomal protein L11 methyltransferase [Bacillus cereus Rock1-15]
 gi|229148159|ref|ZP_04276465.1| Ribosomal protein L11 methyltransferase [Bacillus cereus BDRD-ST24]
 gi|228635299|gb|EEK91823.1| Ribosomal protein L11 methyltransferase [Bacillus cereus BDRD-ST24]
 gi|228671659|gb|EEL26956.1| Ribosomal protein L11 methyltransferase [Bacillus cereus Rock1-15]
 gi|228722057|gb|EEL73484.1| Ribosomal protein L11 methyltransferase [Bacillus cereus AH676]
          Length = 312

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 17/110 (15%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-------------HPTQKPEALL 213
           ++             SD    + +  E   +   EK+             HPT     + 
Sbjct: 109 DWATAWKKYYHPVQISDTFTIVPTWEEYTPSSPDEKIIELDPGMAFGTGTHPTTT---MC 165

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIAT 262
            R L  + +PGD I+D   GSG     A KL  S +   ++    ++ A 
Sbjct: 166 IRALEKTVQPGDAIIDVGTGSGVLSIAAAKLGASSVQAYDLDPVAVESAE 215


>gi|221194948|ref|ZP_03568004.1| methyltransferase [Atopobium rimae ATCC 49626]
 gi|221184851|gb|EEE17242.1| methyltransferase [Atopobium rimae ATCC 49626]
          Length = 232

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 33/126 (26%), Gaps = 26/126 (20%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
            P +S  L+  DPP+ +   G       SL                +          C R
Sbjct: 113 FPDESFSLVIFDPPHLIGKRGWRSDYYGSLDSHT------------WREDLAKGFRECLR 160

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
           VLKP G L                +     I    V       P    RR + +    I 
Sbjct: 161 VLKPYGVLV--------------FKWCECDIPLKDVLALCPAKPIIGNRRPKASKTHWIL 206

Query: 155 ASPSPK 160
               P+
Sbjct: 207 FMREPQ 212


>gi|165975517|ref|YP_001651110.1| 23S rRNA m(2)G2445 methyltransferase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|307244861|ref|ZP_07526960.1| Ribosomal RNA large subunit methyltransferase L [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307249258|ref|ZP_07531255.1| Ribosomal RNA large subunit methyltransferase L [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307253815|ref|ZP_07535669.1| Ribosomal RNA large subunit methyltransferase L [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258271|ref|ZP_07540014.1| Ribosomal RNA large subunit methyltransferase L [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|229560162|sp|B0BRL8|RLML_ACTPJ RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|165875618|gb|ABY68666.1| putative RNA methylase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|306854306|gb|EFM86512.1| Ribosomal RNA large subunit methyltransferase L [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306858782|gb|EFM90841.1| Ribosomal RNA large subunit methyltransferase L [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306863299|gb|EFM95239.1| Ribosomal RNA large subunit methyltransferase L [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867731|gb|EFM99576.1| Ribosomal RNA large subunit methyltransferase L [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 712

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 20/91 (21%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +++ + + +  L +   +  +LIF DPP              S    + DSWD       
Sbjct: 599 NRLFQADCLQWLAECR-ERFELIFVDPP------------TFSNSKRMEDSWDVQRDHI- 644

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
                   +   +R+L  +GT+    +    
Sbjct: 645 ------KLMTQLKRILTTDGTIVFSNNKRGF 669


>gi|148704221|gb|EDL36168.1| RIKEN cDNA 2510005D08, isoform CRA_a [Mus musculus]
          Length = 265

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 29  ISVLEKLPAKSVDLIFADPPY 49
           + + E++ A S DL+ ADPPY
Sbjct: 175 LELPERIAAHSFDLVVADPPY 195


>gi|46143317|ref|ZP_00135491.2| COG0116: Predicted N6-adenine-specific DNA methylase
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126207548|ref|YP_001052773.1| 23S rRNA m(2)G2445 methyltransferase [Actinobacillus
           pleuropneumoniae L20]
 gi|229560160|sp|A3MYD2|RLML_ACTP2 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|126096340|gb|ABN73168.1| putative N6-adenine-specific DNA methylase [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 712

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 20/91 (21%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +++ + + +  L +   +  +LIF DPP              S    + DSWD       
Sbjct: 599 NRLFQADCLQWLAECR-ERFELIFVDPP------------TFSNSKRMEDSWDVQRDHI- 644

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
                   +   +R+L  +GT+    +    
Sbjct: 645 ------KLMTQLKRILTTDGTIVFSNNKRGF 669


>gi|332799053|ref|YP_004460552.1| 50S ribosomal protein L11 methyltransferase [Tepidanaerobacter sp.
           Re1]
 gi|332696788|gb|AEE91245.1| Ribosomal protein L11 methyltransferase [Tepidanaerobacter sp. Re1]
          Length = 314

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 58/165 (35%), Gaps = 7/165 (4%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSSTKPG 224
            Y       +++ ++  W +      E +   D      T   E   L   IL    K  
Sbjct: 115 KYYKPTHIGKNIVIKPSWEVYKPERDEIVVELDPGMAFGTGTHETTMLCLEILEKYIKKD 174

Query: 225 DIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
             ++D   GSG     + KL  +  + I+  ++ + IA + I   +      +  + G +
Sbjct: 175 ITVIDVGCGSGILSIASGKLGAKQVLAIDRDENAVRIARENIK--RNNLETCVRAVKGDK 232

Query: 284 TEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTEL 328
            +       ++   +I    ++ +   + +  +  +G  I+   +
Sbjct: 233 LQNINFKADIIVANII--ADVIIDLSKDAALYLKDNGVFIASGII 275


>gi|317177789|dbj|BAJ55578.1| cyclopropane fatty acid synthase [Helicobacter pylori F16]
          Length = 389

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 51/307 (16%), Positives = 98/307 (31%), Gaps = 29/307 (9%)

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM----LQNLNFWILNDIVWRKSNPMPNF 140
            + W     +V+  + +++  G +   F +         ++   +   I     + + + 
Sbjct: 11  FKQWKNGDYQVVFWDNSVYRNGEHLPKFTLKIHRPLKFSDIKKDMSLTIAEAYMDGVIDI 70

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS---------DWLIPICSG 191
            G   +  H   +  +     K                  +           WL    S 
Sbjct: 71  EGSMDEVMHSLYLQTNYEHLHKHDGAKAIQKPIKESSNISKHYDLGNDFYSIWLDETLSY 130

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG-TSGAVAKKLRRSFIG 250
           S     KD + LH  Q  + L   +     KPG+ +LD   G G  S   A++     +G
Sbjct: 131 SCAYFKKDDDTLHAAQL-QKLDHTLKKLHLKPGEKLLDIGCGWGYLSIKAAQEYGAQVMG 189

Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV-AFNLLVERGLI-QPGQILTNA 308
           I +  +    A KR+  +     + + +L  +  + R+  F+ +V  G+    G+     
Sbjct: 190 ITISSEQYKQANKRVQELGLEDKVTIKLLNYQDLDGRLYRFDKVVSVGMFEHVGKDNLPF 249

Query: 309 QGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
                  V   G +        +H +     G    N W   Y    G L S   LR ++
Sbjct: 250 YFKKVKEVLKRGGMFL------LHSILCCFEGKT--NAWVDKYIFPGGYLPS---LREVM 298

Query: 369 RKELYNC 375
              +  C
Sbjct: 299 -SVMSEC 304


>gi|315638218|ref|ZP_07893400.1| adenine specific DNA methylase [Campylobacter upsaliensis JV21]
 gi|315481754|gb|EFU72376.1| adenine specific DNA methylase [Campylobacter upsaliensis JV21]
          Length = 208

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 6/34 (17%)

Query: 228 LDPFFGSGTSGAVAKKL------RRSFIGIEMKQ 255
           LD F GSGT+     +L       R FI +++ +
Sbjct: 2   LDFFAGSGTTAQAVMELNAEDGGNRQFILVQLDE 35


>gi|311743902|ref|ZP_07717708.1| CheR methyltransferase [Aeromicrobium marinum DSM 15272]
 gi|311313032|gb|EFQ82943.1| CheR methyltransferase [Aeromicrobium marinum DSM 15272]
          Length = 198

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 13/117 (11%)

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL-G 272
           +R++ +  +P   +LD   G+G  GA         +G+++    + +A  R     P   
Sbjct: 36  ARLVNALVQPASSVLDAGCGTGRLGAALHSFGHEVVGVDVD--AVLVAEARAQHAGPTWV 93

Query: 273 NIELTVLTGKRTEPRVAFNLLVERG----LIQPGQILTNAQGNISATVCADGTLISG 325
             +L  L   RT     F+ +V  G     + PG    +    ++A V   G L+ G
Sbjct: 94  EADLAGLDLGRT-----FDAVVTAGNVMVFLAPGTE-GDVVRRLAAHVAPGGVLVLG 144


>gi|288870617|ref|ZP_06114719.2| modification methylase FokI [Clostridium hathewayi DSM 13479]
 gi|288866521|gb|EFC98819.1| modification methylase FokI [Clostridium hathewayi DSM 13479]
          Length = 370

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 5   NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN 50
               + + + +    +++    +   +L++L     DL++ DPPYN
Sbjct: 204 KRYQLFQLEVTTNHKENRCYNEDGAELLKRLQG---DLLYIDPPYN 246


>gi|194898525|ref|XP_001978827.1| GG12428 [Drosophila erecta]
 gi|190650530|gb|EDV47785.1| GG12428 [Drosophila erecta]
          Length = 488

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 3/83 (3%)

Query: 39  SVDLIFADPPYNLQLNGQLYRPDHSL-VDAVTDSWDKFSSFEAY--DAFTRAWLLACRRV 95
           S D I  DPPY ++   +      SL  D  +++   + S   Y   +     L    + 
Sbjct: 300 SFDSIITDPPYGIREATEKVEKKISLRADTRSENMVHYPSTSHYSLQSLYGDLLEFAAKH 359

Query: 96  LKPNGTLWVIGSYHNIFRIGTML 118
           LK  G L     +H+      ML
Sbjct: 360 LKMGGRLVCWLPFHSEDYDPKML 382



 Score = 36.1 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 19/37 (51%)

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            +  + GD++ DPF G+G+    A K     +G ++ 
Sbjct: 209 QAMVRDGDLVFDPFVGTGSLLVSAAKWGGYVLGADID 245


>gi|52144121|ref|YP_082707.1| O-antigen biosynthesis protein; glycosyltransferase;
           methyltransferase [Bacillus cereus E33L]
 gi|51977590|gb|AAU19140.1| possible O-antigen biosynthesis protein; possible
           glycosyltransferase; possible methyltransferase
           [Bacillus cereus E33L]
          Length = 229

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 57/160 (35%), Gaps = 24/160 (15%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L  +  E  +    P  LL  I     +    +LD     G  GA  K+      GIE  
Sbjct: 8   LYEEKSEHYYNAANP-NLLKHIKKEWKE----VLDIGCSGGALGAAIKENGTRVSGIEAF 62

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNA---QG 310
            +  + A +R+  V  LG+IE   L  +  +   V F  ++E         L +      
Sbjct: 63  PEAAEKAKERLDHVI-LGDIEKIDLPYEEEQFDCVIFGDVLEH--------LFDPWAVIE 113

Query: 311 NISATVCADGTLISGTELGSIHRVGAKVSGSETCNG-WNF 349
            +   +  +G +++     SI  V      +    G W++
Sbjct: 114 KVKPYIKENGVILA-----SIPNVAHISVLAPLLAGNWSY 148


>gi|332674663|gb|AEE71479.1| hypothetical protein PAZ_c02770 [Propionibacterium acnes 266]
          Length = 348

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           ILDP  G GT+   A +   +  G+E     ++
Sbjct: 150 ILDPLAGRGTTLECAWRAGHNGFGVEQDAKAVE 182


>gi|315172186|gb|EFU16203.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX1346]
          Length = 504

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 12/101 (11%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            +I++D + G GT G    +  +   GIE+ ++ +  A     +   L NIE    T   
Sbjct: 356 NEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDA----ENNAKLNNIENATFTAGL 411

Query: 284 TEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLIS 324
            E  +    LVE G +QP  ++ +           DG L++
Sbjct: 412 AEELLPK--LVENG-LQPDVVVVDPPRKGL-----DGQLVN 444


>gi|315170705|gb|EFU14722.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX1342]
          Length = 468

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 12/101 (11%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            +I++D + G GT G    +  +   GIE+ ++ +  A     +   L NIE    T   
Sbjct: 320 NEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDA----ENNAKLNNIENATFTAGL 375

Query: 284 TEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLIS 324
            E  +    LVE G +QP  ++ +           DG L++
Sbjct: 376 AEELLPK--LVENG-LQPDVVVVDPPRKGL-----DGQLVN 408


>gi|315106297|gb|EFT78273.1| conserved hypothetical protein [Propionibacterium acnes HL030PA1]
          Length = 337

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           ILDP  G GT+   A +   +  G+E     ++
Sbjct: 139 ILDPLAGRGTTLECAWRAGHNGFGVEQDAKAVE 171


>gi|315104908|gb|EFT76884.1| conserved hypothetical protein [Propionibacterium acnes HL050PA2]
          Length = 337

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           ILDP  G GT+   A +   +  G+E     ++
Sbjct: 139 ILDPLAGRGTTLECAWRAGHNGFGVEQDAKAVE 171


>gi|315025773|gb|EFT37705.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX2137]
          Length = 504

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 12/101 (11%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            +I++D + G GT G    +  +   GIE+ ++ +  A     +   L NIE    T   
Sbjct: 356 NEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDA----ENNAKLNNIENATFTAGL 411

Query: 284 TEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLIS 324
            E  +    LVE G +QP  ++ +           DG L++
Sbjct: 412 AEELLPK--LVENG-LQPDVVVVDPPRKGL-----DGQLVN 444


>gi|314964592|gb|EFT08692.1| conserved hypothetical protein [Propionibacterium acnes HL082PA1]
          Length = 337

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           ILDP  G GT+   A +   +  G+E     ++
Sbjct: 139 ILDPLAGRGTTLECAWRAGHNGFGVEQDAKAVE 171


>gi|314922402|gb|EFS86233.1| conserved hypothetical protein [Propionibacterium acnes HL001PA1]
 gi|314965438|gb|EFT09537.1| conserved hypothetical protein [Propionibacterium acnes HL082PA2]
 gi|315094254|gb|EFT66230.1| conserved hypothetical protein [Propionibacterium acnes HL060PA1]
 gi|327329232|gb|EGE70992.1| hypothetical protein HMPREF9341_00706 [Propionibacterium acnes
           HL103PA1]
          Length = 337

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           ILDP  G GT+   A +   +  G+E     ++
Sbjct: 139 ILDPLAGRGTTLECAWRAGHNGFGVEQDAKAVE 171


>gi|307269782|ref|ZP_07551112.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX4248]
 gi|307272542|ref|ZP_07553795.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0855]
 gi|306510827|gb|EFM79844.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0855]
 gi|306513892|gb|EFM82494.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX4248]
 gi|315036107|gb|EFT48039.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0027]
 gi|329576886|gb|EGG58371.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX1467]
          Length = 468

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 12/101 (11%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            +I++D + G GT G    +  +   GIE+ ++ +  A     +   L NIE    T   
Sbjct: 320 NEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDA----ENNAKLNNIENATFTAGL 375

Query: 284 TEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLIS 324
            E  +    LVE G +QP  ++ +           DG L++
Sbjct: 376 AEELLPK--LVENG-LQPDVVVVDPPRKGL-----DGQLVN 408


>gi|307289579|ref|ZP_07569523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0109]
 gi|306499393|gb|EFM68766.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0109]
 gi|315164578|gb|EFU08595.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX1302]
          Length = 504

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 12/101 (11%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            +I++D + G GT G    +  +   GIE+ ++ +  A     +   L NIE    T   
Sbjct: 356 NEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDA----ENNAKLNNIENATFTAGL 411

Query: 284 TEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLIS 324
            E  +    LVE G +QP  ++ +           DG L++
Sbjct: 412 AEELLPK--LVENG-LQPDVVVVDPPRKGL-----DGQLVN 444


>gi|295114059|emb|CBL32696.1| 23S rRNA m(5)U-1939 methyltransferase [Enterococcus sp. 7L76]
          Length = 457

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 12/101 (11%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            +I++D + G GT G    +  +   GIE+ ++ +  A     +   L NIE    T   
Sbjct: 309 NEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDA----ENNAKLNNIENATFTAGL 364

Query: 284 TEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLIS 324
            E  +    LVE G +QP  ++ +           DG L++
Sbjct: 365 AEELLPK--LVENG-LQPDVVVVDPPRKGL-----DGQLVN 397


>gi|293385052|ref|ZP_06630886.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           R712]
 gi|293389323|ref|ZP_06633784.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           S613]
 gi|312906041|ref|ZP_07765054.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           DAPTO 512]
 gi|312909387|ref|ZP_07768243.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           DAPTO 516]
 gi|291077730|gb|EFE15094.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           R712]
 gi|291081345|gb|EFE18308.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           S613]
 gi|310628036|gb|EFQ11319.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           DAPTO 512]
 gi|311290411|gb|EFQ68967.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           DAPTO 516]
          Length = 504

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 12/101 (11%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            +I++D + G GT G    +  +   GIE+ ++ +  A     +   L NIE    T   
Sbjct: 356 NEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDA----ENNAKLNNIENATFTAGL 411

Query: 284 TEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLIS 324
            E  +    LVE G +QP  ++ +           DG L++
Sbjct: 412 AEELLPK--LVENG-LQPDVVVVDPPRKGL-----DGQLVN 444


>gi|289428802|ref|ZP_06430482.1| conserved hypothetical protein [Propionibacterium acnes J165]
 gi|289157803|gb|EFD06026.1| conserved hypothetical protein [Propionibacterium acnes J165]
 gi|313806389|gb|EFS44896.1| conserved hypothetical protein [Propionibacterium acnes HL087PA2]
 gi|313817468|gb|EFS55182.1| conserved hypothetical protein [Propionibacterium acnes HL046PA2]
 gi|313821996|gb|EFS59710.1| conserved hypothetical protein [Propionibacterium acnes HL036PA1]
 gi|313824108|gb|EFS61822.1| conserved hypothetical protein [Propionibacterium acnes HL036PA2]
 gi|313826475|gb|EFS64189.1| conserved hypothetical protein [Propionibacterium acnes HL063PA1]
 gi|314926572|gb|EFS90403.1| conserved hypothetical protein [Propionibacterium acnes HL036PA3]
 gi|314961363|gb|EFT05464.1| conserved hypothetical protein [Propionibacterium acnes HL002PA2]
 gi|314980294|gb|EFT24388.1| conserved hypothetical protein [Propionibacterium acnes HL072PA2]
 gi|314987378|gb|EFT31469.1| conserved hypothetical protein [Propionibacterium acnes HL005PA2]
 gi|314989081|gb|EFT33172.1| conserved hypothetical protein [Propionibacterium acnes HL005PA3]
 gi|315082715|gb|EFT54691.1| conserved hypothetical protein [Propionibacterium acnes HL027PA2]
 gi|315086074|gb|EFT58050.1| conserved hypothetical protein [Propionibacterium acnes HL002PA3]
 gi|315087660|gb|EFT59636.1| conserved hypothetical protein [Propionibacterium acnes HL072PA1]
 gi|327333313|gb|EGE75033.1| hypothetical protein HMPREF9337_00469 [Propionibacterium acnes
           HL096PA3]
 gi|327445209|gb|EGE91863.1| hypothetical protein HMPREF9568_01434 [Propionibacterium acnes
           HL013PA2]
 gi|328758409|gb|EGF72025.1| hypothetical protein HMPREF9563_00316 [Propionibacterium acnes
           HL020PA1]
          Length = 337

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           ILDP  G GT+   A +   +  G+E     ++
Sbjct: 139 ILDPLAGRGTTLECAWRAGHNGFGVEQDAKAVE 171


>gi|289424377|ref|ZP_06426160.1| conserved hypothetical protein [Propionibacterium acnes SK187]
 gi|289155074|gb|EFD03756.1| conserved hypothetical protein [Propionibacterium acnes SK187]
          Length = 348

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           ILDP  G GT+   A +   +  G+E     ++
Sbjct: 150 ILDPLAGRGTTLECAWRAGHNGFGVEQDAKAVE 182


>gi|257420988|ref|ZP_05597978.1| RNA methyltransferase [Enterococcus faecalis X98]
 gi|257162812|gb|EEU92772.1| RNA methyltransferase [Enterococcus faecalis X98]
          Length = 457

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 12/101 (11%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            +I++D + G GT G    +  +   GIE+ ++ +  A     +   L NIE    T   
Sbjct: 309 NEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDA----ENNAKLNNIENATFTAGL 364

Query: 284 TEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLIS 324
            E  +    LVE G +QP  ++ +           DG L++
Sbjct: 365 AEELLPK--LVENG-LQPDVVVVDPPRKGL-----DGQLVN 397


>gi|257415298|ref|ZP_05592292.1| RNA methyltransferase [Enterococcus faecalis AR01/DG]
 gi|257157126|gb|EEU87086.1| RNA methyltransferase [Enterococcus faecalis ARO1/DG]
          Length = 457

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 12/101 (11%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            +I++D + G GT G    +  +   GIE+ ++ +  A     +   L NIE    T   
Sbjct: 309 NEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDA----ENNAKLNNIENATFTAGL 364

Query: 284 TEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLIS 324
            E  +    LVE G +QP  ++ +           DG L++
Sbjct: 365 AEELLPK--LVENG-LQPDVVVVDPPRKGL-----DGQLVN 397


>gi|257086087|ref|ZP_05580448.1| RNA methyltransferase [Enterococcus faecalis D6]
 gi|256994117|gb|EEU81419.1| RNA methyltransferase [Enterococcus faecalis D6]
          Length = 457

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 12/101 (11%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            +I++D + G GT G    +  +   GIE+ ++ +  A     +   L NIE    T   
Sbjct: 309 NEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDA----ENNAKLNNIENATFTAGL 364

Query: 284 TEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLIS 324
            E  +    LVE G +QP  ++ +           DG L++
Sbjct: 365 AEELLPK--LVENG-LQPDVVVVDPPRKGL-----DGQLVN 397


>gi|256959863|ref|ZP_05564034.1| RNA methyltransferase [Enterococcus faecalis Merz96]
 gi|256950359|gb|EEU66991.1| RNA methyltransferase [Enterococcus faecalis Merz96]
          Length = 457

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 12/101 (11%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            +I++D + G GT G    +  +   GIE+ ++ +  A     +   L NIE    T   
Sbjct: 309 NEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDA----ENNAKLNNIENATFTAGL 364

Query: 284 TEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLIS 324
            E  +    LVE G +QP  ++ +           DG L++
Sbjct: 365 AEELLPK--LVENG-LQPDVVVVDPPRKGL-----DGQLVN 397


>gi|256957402|ref|ZP_05561573.1| RNA methyltransferase [Enterococcus faecalis DS5]
 gi|256964435|ref|ZP_05568606.1| RNA methyltransferase [Enterococcus faecalis HIP11704]
 gi|257077602|ref|ZP_05571963.1| RNA methyltransferase [Enterococcus faecalis JH1]
 gi|294779933|ref|ZP_06745314.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           PC1.1]
 gi|256947898|gb|EEU64530.1| RNA methyltransferase [Enterococcus faecalis DS5]
 gi|256954931|gb|EEU71563.1| RNA methyltransferase [Enterococcus faecalis HIP11704]
 gi|256985632|gb|EEU72934.1| RNA methyltransferase [Enterococcus faecalis JH1]
 gi|294452982|gb|EFG21403.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           PC1.1]
          Length = 457

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 12/101 (11%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            +I++D + G GT G    +  +   GIE+ ++ +  A     +   L NIE    T   
Sbjct: 309 NEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDA----ENNAKLNNIENATFTAGL 364

Query: 284 TEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLIS 324
            E  +    LVE G +QP  ++ +           DG L++
Sbjct: 365 AEELLPK--LVENG-LQPDVVVVDPPRKGL-----DGQLVN 397


>gi|256854405|ref|ZP_05559769.1| RNA methyltransferase [Enterococcus faecalis T8]
 gi|256709965|gb|EEU25009.1| RNA methyltransferase [Enterococcus faecalis T8]
 gi|315151570|gb|EFT95586.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0012]
 gi|327534318|gb|AEA93152.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecalis
           OG1RF]
          Length = 468

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 12/101 (11%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            +I++D + G GT G    +  +   GIE+ ++ +  A     +   L NIE    T   
Sbjct: 320 NEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDA----ENNAKLNNIENATFTAGL 375

Query: 284 TEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLIS 324
            E  +    LVE G +QP  ++ +           DG L++
Sbjct: 376 AEELLPK--LVENG-LQPDVVVVDPPRKGL-----DGQLVN 408


>gi|255971187|ref|ZP_05421773.1| RNA methyltransferase [Enterococcus faecalis T1]
 gi|255973811|ref|ZP_05424397.1| RNA methyltransferase [Enterococcus faecalis T2]
 gi|257083655|ref|ZP_05578016.1| RNA methyltransferase [Enterococcus faecalis Fly1]
 gi|255962205|gb|EET94681.1| RNA methyltransferase [Enterococcus faecalis T1]
 gi|255966683|gb|EET97305.1| RNA methyltransferase [Enterococcus faecalis T2]
 gi|256991685|gb|EEU78987.1| RNA methyltransferase [Enterococcus faecalis Fly1]
 gi|323479924|gb|ADX79363.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           62]
          Length = 457

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 12/101 (11%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            +I++D + G GT G    +  +   GIE+ ++ +  A     +   L NIE    T   
Sbjct: 309 NEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDA----ENNAKLNNIENATFTAGL 364

Query: 284 TEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLIS 324
            E  +    LVE G +QP  ++ +           DG L++
Sbjct: 365 AEELLPK--LVENG-LQPDVVVVDPPRKGL-----DGQLVN 397


>gi|229546565|ref|ZP_04435290.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
           faecalis TX1322]
 gi|307274683|ref|ZP_07555855.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX2134]
 gi|307284510|ref|ZP_07564672.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0860]
 gi|307296382|ref|ZP_07576206.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0411]
 gi|229308310|gb|EEN74297.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
           faecalis TX1322]
 gi|306496037|gb|EFM65622.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0411]
 gi|306503187|gb|EFM72441.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0860]
 gi|306508612|gb|EFM77710.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX2134]
 gi|315029097|gb|EFT41029.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX4000]
          Length = 504

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 12/101 (11%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            +I++D + G GT G    +  +   GIE+ ++ +  A     +   L NIE    T   
Sbjct: 356 NEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDA----ENNAKLNNIENATFTAGL 411

Query: 284 TEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLIS 324
            E  +    LVE G +QP  ++ +           DG L++
Sbjct: 412 AEELLPK--LVENG-LQPDVVVVDPPRKGL-----DGQLVN 444


>gi|229548674|ref|ZP_04437399.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
           faecalis ATCC 29200]
 gi|312953113|ref|ZP_07771962.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0102]
 gi|229306190|gb|EEN72186.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
           faecalis ATCC 29200]
 gi|310628947|gb|EFQ12230.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0102]
 gi|315146955|gb|EFT90971.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX4244]
 gi|315153976|gb|EFT97992.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0031]
 gi|315156740|gb|EFU00757.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0043]
          Length = 504

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 12/101 (11%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            +I++D + G GT G    +  +   GIE+ ++ +  A     +   L NIE    T   
Sbjct: 356 NEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDA----ENNAKLNNIENATFTAGL 411

Query: 284 TEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLIS 324
            E  +    LVE G +QP  ++ +           DG L++
Sbjct: 412 AEELLPK--LVENG-LQPDVVVVDPPRKGL-----DGQLVN 444


>gi|228902837|ref|ZP_04066981.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis IBL
           4222]
 gi|228856793|gb|EEN01309.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis IBL
           4222]
          Length = 312

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 56/173 (32%), Gaps = 26/173 (15%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-------------HPTQKPEALL 213
           ++             SD    + +  E   +   EK+             HPT     + 
Sbjct: 109 DWATAWKKYYHPVQISDTFTIVPTWEEYTPSSPDEKIIELDPGMAFGTGTHPTTT---MC 165

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATK--RIASVQP 270
            R L  + +PGD I+D   GSG     A KL  S +   ++    ++ A    R+     
Sbjct: 166 IRALEKTVQPGDAIIDVGTGSGVLSIAASKLGASSVQAYDLDPVAVESAEMNVRLNKTDD 225

Query: 271 LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
           + ++    L      P      L+   L+    +L       +A V   G L 
Sbjct: 226 IVSVGQNSLLEGIEGPV----DLIVANLLAEIILLFPED---AARVVKSGGLF 271


>gi|227554844|ref|ZP_03984891.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
           faecalis HH22]
 gi|312900324|ref|ZP_07759635.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0470]
 gi|312904253|ref|ZP_07763415.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0635]
 gi|227176013|gb|EEI56985.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
           faecalis HH22]
 gi|310632349|gb|EFQ15632.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0635]
 gi|311292512|gb|EFQ71068.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0470]
 gi|315031445|gb|EFT43377.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0017]
 gi|315166923|gb|EFU10940.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX1341]
 gi|315575356|gb|EFU87547.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0309B]
 gi|315578799|gb|EFU90990.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0630]
 gi|315581386|gb|EFU93577.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0309A]
          Length = 504

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 12/101 (11%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            +I++D + G GT G    +  +   GIE+ ++ +  A     +   L NIE    T   
Sbjct: 356 NEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDA----ENNAKLNNIENATFTAGL 411

Query: 284 TEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLIS 324
            E  +    LVE G +QP  ++ +           DG L++
Sbjct: 412 AEELLPK--LVENG-LQPDVVVVDPPRKGL-----DGQLVN 444


>gi|227517694|ref|ZP_03947743.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
           faecalis TX0104]
 gi|227074849|gb|EEI12812.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
           faecalis TX0104]
          Length = 504

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 12/101 (11%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            +I++D + G GT G    +  +   GIE+ ++ +  A     +   L NIE    T   
Sbjct: 356 NEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDA----ENNAKLNNIENATFTAGL 411

Query: 284 TEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLIS 324
            E  +    LVE G +QP  ++ +           DG L++
Sbjct: 412 AEELLPK--LVENG-LQPDVVVVDPPRKGL-----DGQLVN 444


>gi|295129824|ref|YP_003580487.1| hypothetical protein HMPREF0675_3302 [Propionibacterium acnes
           SK137]
 gi|291375879|gb|ADD99733.1| conserved hypothetical protein [Propionibacterium acnes SK137]
 gi|313765286|gb|EFS36650.1| conserved hypothetical protein [Propionibacterium acnes HL013PA1]
 gi|313772799|gb|EFS38765.1| conserved hypothetical protein [Propionibacterium acnes HL074PA1]
 gi|313793180|gb|EFS41247.1| conserved hypothetical protein [Propionibacterium acnes HL110PA1]
 gi|313802732|gb|EFS43950.1| conserved hypothetical protein [Propionibacterium acnes HL110PA2]
 gi|313810939|gb|EFS48653.1| conserved hypothetical protein [Propionibacterium acnes HL083PA1]
 gi|313814563|gb|EFS52277.1| conserved hypothetical protein [Propionibacterium acnes HL025PA1]
 gi|313815345|gb|EFS53059.1| conserved hypothetical protein [Propionibacterium acnes HL059PA1]
 gi|313828784|gb|EFS66498.1| conserved hypothetical protein [Propionibacterium acnes HL063PA2]
 gi|313831704|gb|EFS69418.1| conserved hypothetical protein [Propionibacterium acnes HL007PA1]
 gi|313834414|gb|EFS72128.1| conserved hypothetical protein [Propionibacterium acnes HL056PA1]
 gi|313840395|gb|EFS78109.1| conserved hypothetical protein [Propionibacterium acnes HL086PA1]
 gi|314916061|gb|EFS79892.1| conserved hypothetical protein [Propionibacterium acnes HL005PA4]
 gi|314917212|gb|EFS81043.1| conserved hypothetical protein [Propionibacterium acnes HL050PA1]
 gi|314921712|gb|EFS85543.1| conserved hypothetical protein [Propionibacterium acnes HL050PA3]
 gi|314931081|gb|EFS94912.1| conserved hypothetical protein [Propionibacterium acnes HL067PA1]
 gi|314955050|gb|EFS99456.1| conserved hypothetical protein [Propionibacterium acnes HL027PA1]
 gi|314959089|gb|EFT03191.1| conserved hypothetical protein [Propionibacterium acnes HL002PA1]
 gi|314969691|gb|EFT13789.1| conserved hypothetical protein [Propionibacterium acnes HL037PA1]
 gi|314974756|gb|EFT18851.1| conserved hypothetical protein [Propionibacterium acnes HL053PA1]
 gi|314977046|gb|EFT21141.1| conserved hypothetical protein [Propionibacterium acnes HL045PA1]
 gi|314985468|gb|EFT29560.1| conserved hypothetical protein [Propionibacterium acnes HL005PA1]
 gi|315078391|gb|EFT50422.1| conserved hypothetical protein [Propionibacterium acnes HL053PA2]
 gi|315082140|gb|EFT54116.1| conserved hypothetical protein [Propionibacterium acnes HL078PA1]
 gi|315097303|gb|EFT69279.1| conserved hypothetical protein [Propionibacterium acnes HL038PA1]
 gi|315099491|gb|EFT71467.1| conserved hypothetical protein [Propionibacterium acnes HL059PA2]
 gi|315102003|gb|EFT73979.1| conserved hypothetical protein [Propionibacterium acnes HL046PA1]
 gi|315110075|gb|EFT82051.1| conserved hypothetical protein [Propionibacterium acnes HL030PA2]
 gi|327331327|gb|EGE73066.1| hypothetical protein HMPREF9338_00700 [Propionibacterium acnes
           HL096PA2]
 gi|327334833|gb|EGE76544.1| hypothetical protein HMPREF9344_00699 [Propionibacterium acnes
           HL097PA1]
 gi|327447292|gb|EGE93946.1| hypothetical protein HMPREF9570_01574 [Propionibacterium acnes
           HL043PA1]
 gi|327450261|gb|EGE96915.1| hypothetical protein HMPREF9571_00242 [Propionibacterium acnes
           HL043PA2]
 gi|327454527|gb|EGF01182.1| hypothetical protein HMPREF9581_00703 [Propionibacterium acnes
           HL087PA3]
 gi|327456597|gb|EGF03252.1| hypothetical protein HMPREF9586_00977 [Propionibacterium acnes
           HL083PA2]
 gi|327457127|gb|EGF03782.1| hypothetical protein HMPREF9584_00322 [Propionibacterium acnes
           HL092PA1]
 gi|328755581|gb|EGF69197.1| hypothetical protein HMPREF9579_00784 [Propionibacterium acnes
           HL087PA1]
 gi|328756907|gb|EGF70523.1| hypothetical protein HMPREF9588_01316 [Propionibacterium acnes
           HL025PA2]
 gi|328761140|gb|EGF74684.1| hypothetical protein HMPREF9343_01151 [Propionibacterium acnes
           HL099PA1]
          Length = 337

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           ILDP  G GT+   A +   +  G+E     ++
Sbjct: 139 ILDPLAGRGTTLECAWRAGHNGFGVEQDAKAVE 171


>gi|198454454|ref|XP_001359596.2| GA10534 [Drosophila pseudoobscura pseudoobscura]
 gi|198132801|gb|EAL28746.2| GA10534 [Drosophila pseudoobscura pseudoobscura]
          Length = 460

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 19/37 (51%)

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            +  + GD++ DPF G+G+    A K     +G ++ 
Sbjct: 181 QAMVREGDLVFDPFVGTGSLLVSAAKFGGYVLGADID 217


>gi|254428061|ref|ZP_05041768.1| Methyltransferase small domain family [Alcanivorax sp. DG881]
 gi|196194230|gb|EDX89189.1| Methyltransferase small domain family [Alcanivorax sp. DG881]
          Length = 398

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 23/82 (28%)

Query: 24  IKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           I+G++ + +++L    +  DL+  DPP              + +    D  +  + + A 
Sbjct: 275 IQGDAFAAMKQLIADGEKYDLVVLDPP--------------AFIKRKKDFKNGLAGYHAI 320

Query: 82  DAFTRAWLLACRRVLKPNGTLW 103
           +           R++KP G L 
Sbjct: 321 NEL-------AMRLVKPGGYLV 335


>gi|189218442|ref|YP_001939083.1| methylase of polypeptide chain release factors [Methylacidiphilum
           infernorum V4]
 gi|189185300|gb|ACD82485.1| Methylase of polypeptide chain release factors [Methylacidiphilum
           infernorum V4]
          Length = 279

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 5/103 (4%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL--RRSFIGIEMKQDYIDIAT 262
           P  + E ++   +   ++    ILD   GSG       KL   RSF G ++ ++ +++A 
Sbjct: 94  PRPETEYVVEAAINLLSRIPGPILDVGTGSGAIVVTLAKLFPDRSFYGSDISEEALEVAR 153

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL 305
           K   + + L N+           P   F L+V      P + L
Sbjct: 154 K---NGKDLANLYFYKDDLLNDPPLDFFELIVANLPYIPSETL 193


>gi|110835389|ref|YP_694248.1| hypothetical protein ABO_2528 [Alcanivorax borkumensis SK2]
 gi|110648500|emb|CAL17976.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
          Length = 401

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 23/82 (28%)

Query: 24  IKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           I+G++ + +++L    +  DL+  DPP              + +    D  +  + + A 
Sbjct: 278 IQGDAFAAMKQLIADGEKYDLVVLDPP--------------AFIKRKKDFKNGLAGYHAI 323

Query: 82  DAFTRAWLLACRRVLKPNGTLW 103
           +           R++KP G L 
Sbjct: 324 NEL-------AMRLVKPGGYLV 338


>gi|33355823|gb|AAQ16244.1| RNA methyl transferase-like [Enterococcus faecalis]
          Length = 571

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 12/101 (11%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            +I++D + G GT G    +  +   GIE+ ++ +  A     +   L NIE    T   
Sbjct: 320 NEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDA----ENNAKLNNIENATFTAGL 375

Query: 284 TEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLIS 324
            E  +    LVE G +QP  ++ +           DG L++
Sbjct: 376 AEELLPK--LVENG-LQPDVVVVDPPRKGL-----DGQLVN 408


>gi|50841745|ref|YP_054972.1| hypothetical protein PPA0255 [Propionibacterium acnes KPA171202]
 gi|50839347|gb|AAT82014.1| hypothetical protein PPA0255 [Propionibacterium acnes KPA171202]
          Length = 348

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           ILDP  G GT+   A +   +  G+E     ++
Sbjct: 150 ILDPLAGRGTTLECAWRAGHNGFGVEQDAKAVE 182


>gi|29375324|ref|NP_814478.1| RNA methyltransferase [Enterococcus faecalis V583]
 gi|256617615|ref|ZP_05474461.1| RNA methyltransferase [Enterococcus faecalis ATCC 4200]
 gi|256761497|ref|ZP_05502077.1| RNA methyltransferase [Enterococcus faecalis T3]
 gi|257089155|ref|ZP_05583516.1| RNA methyltransferase [Enterococcus faecalis CH188]
 gi|257418339|ref|ZP_05595333.1| RNA methyltransferase trmA [Enterococcus faecalis T11]
 gi|50401543|sp|Q837V0|Y728_ENTFA RecName: Full=Uncharacterized RNA methyltransferase EF_0728
 gi|29342784|gb|AAO80548.1| RNA methyltransferase, TrmA family [Enterococcus faecalis V583]
 gi|256597142|gb|EEU16318.1| RNA methyltransferase [Enterococcus faecalis ATCC 4200]
 gi|256682748|gb|EEU22443.1| RNA methyltransferase [Enterococcus faecalis T3]
 gi|256997967|gb|EEU84487.1| RNA methyltransferase [Enterococcus faecalis CH188]
 gi|257160167|gb|EEU90127.1| RNA methyltransferase trmA [Enterococcus faecalis T11]
          Length = 457

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 12/101 (11%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            +I++D + G GT G    +  +   GIE+ ++ +  A     +   L NIE    T   
Sbjct: 309 NEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDA----ENNAKLNNIENATFTAGL 364

Query: 284 TEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLIS 324
            E  +    LVE G +QP  ++ +           DG L++
Sbjct: 365 AEELLPK--LVENG-LQPDVVVVDPPRKGL-----DGQLVN 397


>gi|321471308|gb|EFX82281.1| hypothetical protein DAPPUDRAFT_302582 [Daphnia pulex]
          Length = 463

 Score = 37.7 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 6/85 (7%)

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
           L  + +    ++D   G+GT G +  +  R  IG+E+ +  ++ A  R  +      I+ 
Sbjct: 300 LQLAPQRMSTVVDLCCGTGTQGLMVARHSRGVIGVELSRSAVEDA--RFNAAH--NQIQN 355

Query: 277 TVLTGKRTEPRVAFNLLVERGLIQP 301
                 R E    F  ++E+  + P
Sbjct: 356 AEFIAGRAEKL--FKHIMEQLEVSP 378


>gi|315649292|ref|ZP_07902381.1| putative RNA methylase [Paenibacillus vortex V453]
 gi|315275280|gb|EFU38649.1| putative RNA methylase [Paenibacillus vortex V453]
          Length = 344

 Score = 37.7 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 2/71 (2%)

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII--LDPFFGSGTSGAVAKKLRRSFIGI 251
            L++K   + + T     L   ++  +    D +  LDP  G G     A  +  S  G 
Sbjct: 159 WLKHKQKPQNYSTGLSARLARALVNIAAPEPDGVMLLDPCCGMGNVLIEALSMGISVEGC 218

Query: 252 EMKQDYIDIAT 262
           ++    +  A 
Sbjct: 219 DINPLAVRGAR 229


>gi|240949622|ref|ZP_04753957.1| hypothetical protein AM305_11750 [Actinobacillus minor NM305]
 gi|240295880|gb|EER46556.1| hypothetical protein AM305_11750 [Actinobacillus minor NM305]
          Length = 251

 Score = 37.7 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 49/121 (40%), Gaps = 7/121 (5%)

Query: 214 SRILVSST-KPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIAS--VQ 269
             ++ +        +L+     GT+   +AK      IGI++ ++ ++ A + I    V+
Sbjct: 28  DWLIANGDFNKNKKVLEVACNMGTTAIQLAKDYGCQIIGIDLDEEALEKARENIKENGVE 87

Query: 270 PLGNIELTVLTGKRTEPRVAFNLLVERGLIQ--PGQILTNAQGNISATVCADGTLISGTE 327
            L  ++    T K      +F++++   ++   P +    A       +  +G L++   
Sbjct: 88  ELVQVQRANAT-KLPFDDNSFDIVINEAMLTMLPMEAKEKAIREYLRVLKPNGFLLTHDV 146

Query: 328 L 328
           L
Sbjct: 147 L 147


>gi|311694270|gb|ADP97143.1| RNA methylase [marine bacterium HP15]
          Length = 711

 Score = 37.7 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 14  NSIFEWKDKIIKGNSISVL--EKLPAKSVDLIFADPP 48
           N     K ++ + + ++ L   K   +  DLIF DPP
Sbjct: 591 NGADPKKHRVEQADCLAWLADRKTADQRFDLIFMDPP 627


>gi|315502526|ref|YP_004081413.1| hypothetical protein ML5_1731 [Micromonospora sp. L5]
 gi|315409145|gb|ADU07262.1| hypothetical protein ML5_1731 [Micromonospora sp. L5]
          Length = 347

 Score = 37.7 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           ++LDP  G GT+   A       IGIE  
Sbjct: 143 VVLDPLCGRGTTLNQALMYGYDGIGIERD 171


>gi|281202883|gb|EFA77085.1| hypothetical protein PPL_09838 [Polysphondylium pallidum PN500]
          Length = 244

 Score = 37.7 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIA 261
           + T  P  +   +++ +    DI+LD   G G      AK      IGI++  D I+ A
Sbjct: 45  YATTSPVTIERSLIMINCDKDDILLDVGCGDGRIAIYAAKHYGIKSIGIDVNPDLIEKA 103


>gi|184157495|ref|YP_001845834.1| tRNA (guanine-N(7)-)-methyltransferase [Acinetobacter baumannii
           ACICU]
 gi|332872462|ref|ZP_08440433.1| tRNA (guanine-N(7)-)-methyltransferase [Acinetobacter baumannii
           6014059]
 gi|183209089|gb|ACC56487.1| predicted S-adenosylmethionine-dependent methyltransferase
           [Acinetobacter baumannii ACICU]
 gi|332739348|gb|EGJ70204.1| tRNA (guanine-N(7)-)-methyltransferase [Acinetobacter baumannii
           6014059]
          Length = 238

 Score = 37.7 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 23/125 (18%)

Query: 18  EWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           E K+ +++  ++I VL ++P  S++ +            QLY P         D W K  
Sbjct: 111 ELKNLRVLDADAIQVLREMPDNSINCV------------QLYFP---------DPWQKKR 149

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            F+         +    + L+  GT      +         + +    + N      S P
Sbjct: 150 HFKR-RFVIHERMQLVEQKLELGGTFHAATDWEPYAEWMLDVLDNRPDLENLAGKGNSYP 208

Query: 137 MPNFR 141
            P +R
Sbjct: 209 RPEWR 213


>gi|328792714|ref|XP_001120700.2| PREDICTED: tRNA guanosine-2'-O-methyltransferase TRM11 homolog
           [Apis mellifera]
          Length = 465

 Score = 37.7 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 19/37 (51%)

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            +  + GD++LDPF G+G+    A       +G ++ 
Sbjct: 205 QAQVQKGDVVLDPFVGTGSLLVAASHFGGYTLGTDID 241


>gi|302387197|ref|YP_003823019.1| RNA methyltransferase, TrmA family [Clostridium saccharolyticum
           WM1]
 gi|302197825|gb|ADL05396.1| RNA methyltransferase, TrmA family [Clostridium saccharolyticum
           WM1]
          Length = 563

 Score = 37.7 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVS-STKPGDIILDPFFGSGTSGAVAKKLRR 246
           +C    R+ +K   +++P Q  E L  + + +      + ++D + G GT G VA K   
Sbjct: 375 LCGCRFRISSKSFYQVNPVQT-EVLYQKAIEAAGLTGKERVIDAYCGIGTIGIVASKYAN 433

Query: 247 SFIGIEMKQDYIDIATK 263
             IG+E+ +D +  A +
Sbjct: 434 EVIGVELNRDAVKDAVE 450


>gi|163816191|ref|ZP_02207559.1| hypothetical protein COPEUT_02375 [Coprococcus eutactus ATCC 27759]
 gi|158448611|gb|EDP25606.1| hypothetical protein COPEUT_02375 [Coprococcus eutactus ATCC 27759]
          Length = 495

 Score = 37.7 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 210 EALLSRILVSST-KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           E L  + +  +  K  + ++D + G GT G  A    +  IG+E+ +  +  A 
Sbjct: 324 EVLYGKAIKYADLKKKETVIDAYCGIGTIGIAASDRAKKVIGVELNEAAVHDAR 377


>gi|91773585|ref|YP_566277.1| putative RNA methylase [Methanococcoides burtonii DSM 6242]
 gi|91712600|gb|ABE52527.1| Nucleic acid binding protein [Methanococcoides burtonii DSM 6242]
          Length = 344

 Score = 37.7 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 27/111 (24%)

Query: 26  GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
           G++  V   L  +SVD + ADPPY     G+  R +                 E+     
Sbjct: 251 GDACKV--PLVDESVDAVIADPPY-----GRSARIEG----------------ESLHHLY 287

Query: 86  RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
                   RVLKP     ++    +   +  +++ + F I +  + R    
Sbjct: 288 EHSFAEMFRVLKPGKLAIIV----SEIDVTELVEKVGFTIKDRFLQRVHKS 334


>gi|14590759|ref|NP_142829.1| hypothetical protein PH0905 [Pyrococcus horikoshii OT3]
 gi|3257316|dbj|BAA29999.1| 996aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 996

 Score = 37.7 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 28/47 (59%), Gaps = 6/47 (12%)

Query: 6   SLAINENQNSIFEWK---DKIIKGNSISVLEKLPAKSVDLIFADPPY 49
           + A++ +Q ++ ++     K+++G++ S+   L  +  D+I  DPPY
Sbjct: 524 TSALSSSQKTLADFTGNSIKVLQGDATSL--NL-GEKFDVIVTDPPY 567


>gi|163847401|ref|YP_001635445.1| ribosomal protein L11 methyltransferase [Chloroflexus aurantiacus
           J-10-fl]
 gi|222525250|ref|YP_002569721.1| ribosomal protein L11 methyltransferase [Chloroflexus sp. Y-400-fl]
 gi|259534492|sp|A9WD89|PRMA_CHLAA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|259534495|sp|B9LFP4|PRMA_CHLSY RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|163668690|gb|ABY35056.1| ribosomal protein L11 methyltransferase [Chloroflexus aurantiacus
           J-10-fl]
 gi|222449129|gb|ACM53395.1| ribosomal protein L11 methyltransferase [Chloroflexus sp. Y-400-fl]
          Length = 328

 Score = 37.7 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G  LHPT +   L   +L    +PG  +LD   GSG     A KL     + ++     +
Sbjct: 146 GTGLHPTTR---LCLHLLERLVQPGQQVLDLGTGSGILAIAAAKLGAGQVLALDNDPIAV 202

Query: 259 DIATKRIASVQ 269
            +A + +   Q
Sbjct: 203 RVAHENVERNQ 213


>gi|320449562|ref|YP_004201658.1| hypothetical protein TSC_c04770 [Thermus scotoductus SA-01]
 gi|320149731|gb|ADW21109.1| hypothetical protein TSC_c04770 [Thermus scotoductus SA-01]
          Length = 948

 Score = 37.7 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 21/68 (30%), Gaps = 1/68 (1%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
           G  R   +     HP    EA     L         +LDPF G G+    A +L      
Sbjct: 80  GIIRRMMQKQLHKHPEVYAEARAEM-LKYCDGKLPPVLDPFAGGGSIPLEAARLGFEAYA 138

Query: 251 IEMKQDYI 258
            +     +
Sbjct: 139 GDQNPVAV 146


>gi|183598035|ref|ZP_02959528.1| hypothetical protein PROSTU_01391 [Providencia stuartii ATCC 25827]
 gi|188022814|gb|EDU60854.1| hypothetical protein PROSTU_01391 [Providencia stuartii ATCC 25827]
          Length = 203

 Score = 37.7 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKS-VDLIFADPPY 49
           + ++N+  + EN+  +      II GNS+ +L +    +  D++F DPP+
Sbjct: 87  LDKQNAQLLTENKARLQSDNANIINGNSLEILGQ--NGTPFDVVFIDPPF 134


>gi|29839903|ref|NP_829009.1| hypothetical protein CCA00135 [Chlamydophila caviae GPIC]
 gi|29834250|gb|AAP04887.1| conserved hypothetical protein TIGR00095 [Chlamydophila caviae
           GPIC]
          Length = 189

 Score = 37.7 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 22  KIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNG 55
            I+K  + S +++L  K  S DLI+ DPPYNL+   
Sbjct: 94  TIMKQEARSAIQRLTKKGMSFDLIYIDPPYNLENRY 129


>gi|317968081|ref|ZP_07969471.1| glycosyltransferase [Synechococcus sp. CB0205]
          Length = 464

 Score = 37.7 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 3/88 (3%)

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
           L R+      PG  +L+   G GT   +A       +GIE+  D   +A +R   ++ L 
Sbjct: 21  LERLHQLLVPPGLRVLE--VGCGTGDLLAHLQPAHGVGIELDPDVAAVARERHPELRILA 78

Query: 273 NIELTVLTGKRTEPRVAFNLLVERGLIQ 300
               T+      E +  F++++    + 
Sbjct: 79  TNAETMTPASIGESQ-PFDVILLPNTLN 105


>gi|298208825|ref|YP_003717004.1| hypothetical protein CA2559_11313 [Croceibacter atlanticus
           HTCC2559]
 gi|83848752|gb|EAP86621.1| hypothetical protein CA2559_11313 [Croceibacter atlanticus
           HTCC2559]
          Length = 411

 Score = 37.7 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 5   NSLAINENQNSIFEWK--DKIIKGNSISVLEKL--PAKSVDLIFADPP 48
            +LA+ +   ++ + K    II+G++   L++L    +  D++  DPP
Sbjct: 271 QALAVAKENATLNDHKGTHHIIEGDAFEKLQQLIQKNRKFDVVVIDPP 318


>gi|331085962|ref|ZP_08335045.1| 50S ribosomal protein L11 methyltransferase [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330406885|gb|EGG86390.1| 50S ribosomal protein L11 methyltransferase [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 318

 Score = 37.7 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 62/175 (35%), Gaps = 18/175 (10%)

Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
           ++  E L W +   +     +  D L   + +     D    I           G  +H 
Sbjct: 100 ESQTEDLDWVNNWKQYFHQFYVDDILIIPSWEKVKPEDEDKMIIHID--PGTAFGTGMHE 157

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF-IGIEMKQDYIDIATKR 264
           T     L  R L         ILD   GSG  G +A K   ++ +G ++    ID   + 
Sbjct: 158 TT---QLCIRQLKKHVTKETRILDVGCGSGILGMLALKFGAAYSVGTDLDPCAIDATYE- 213

Query: 265 IASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
                   N+E+  +T  R +  V    +++   +Q  ++  +    + A + AD
Sbjct: 214 --------NMEVNGIT--RDQYEVMIGNIIDDKEVQD-KVGYDKYDIVVANILAD 257


>gi|325204818|gb|ADZ00272.1| ribosomal protein L11 methyltransferase [Neisseria meningitidis
           M01-240355]
          Length = 295

 Score = 37.7 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  + L +  K G+ +LD   GSG     A KL   S +G+++ +  +
Sbjct: 143 GTGSHPTTR---LCLKWLDTQLKNGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAV 199

Query: 259 DIATK 263
                
Sbjct: 200 RAGKD 204


>gi|325135641|gb|EGC58258.1| ribosomal protein L11 methyltransferase [Neisseria meningitidis
           M0579]
          Length = 330

 Score = 37.7 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  + L +  K G+ +LD   GSG     A KL   S +G+++ +  +
Sbjct: 178 GTGSHPTTR---LCLKWLDTQLKNGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAV 234

Query: 259 DIATK 263
                
Sbjct: 235 RAGKD 239


>gi|325129518|gb|EGC52345.1| ribosomal protein L11 methyltransferase [Neisseria meningitidis
           OX99.30304]
          Length = 295

 Score = 37.7 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  + L +  K G+ +LD   GSG     A KL   S +G+++ +  +
Sbjct: 143 GTGSHPTTR---LCLKWLDTQLKNGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAV 199

Query: 259 DIATK 263
                
Sbjct: 200 RAGKD 204


>gi|325127520|gb|EGC50446.1| ribosomal protein L11 methyltransferase [Neisseria meningitidis
           N1568]
          Length = 295

 Score = 37.7 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  + L +  K G+ +LD   GSG     A KL   S +G+++ +  +
Sbjct: 143 GTGSHPTTR---LCLKWLDTQLKNGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAV 199

Query: 259 DIATK 263
                
Sbjct: 200 RAGKD 204


>gi|302392173|ref|YP_003827993.1| methyltransferase [Acetohalobium arabaticum DSM 5501]
 gi|302204250|gb|ADL12928.1| methyltransferase [Acetohalobium arabaticum DSM 5501]
          Length = 182

 Score = 37.7 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 19/28 (67%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY 49
           ++I+G+ ++ L +   +S D+I  DPPY
Sbjct: 94  EVIQGDVLTQLGRFTPQSFDIIVMDPPY 121


>gi|254671001|emb|CBA07760.1| ribosomal protein L11 methyltransferase [Neisseria meningitidis
           alpha153]
          Length = 330

 Score = 37.7 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  + L +  K G+ +LD   GSG     A KL   S +G+++ +  +
Sbjct: 178 GTGSHPTTR---LCLKWLDTQLKNGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAV 234

Query: 259 DIATK 263
                
Sbjct: 235 RAGKD 239


>gi|229578378|ref|YP_002836776.1| hypothetical protein YG5714_0559 [Sulfolobus islandicus Y.G.57.14]
 gi|228009092|gb|ACP44854.1| hypothetical protein YG5714_0559 [Sulfolobus islandicus Y.G.57.14]
          Length = 360

 Score = 37.7 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 20/49 (40%)

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           L  I    +     ++DPF G+GT    A +     I I++      +A
Sbjct: 11  LKHIDEIMSDIEGTVIDPFGGAGTIVLSALRHGNKGIYIDINPYAWLVA 59


>gi|226942016|ref|YP_002797090.1| Cyclopropane-fatty-acyl-phospholipid synthase [Laribacter
           hongkongensis HLHK9]
 gi|226716943|gb|ACO76081.1| Cyclopropane-fatty-acyl-phospholipid synthase [Laribacter
           hongkongensis HLHK9]
          Length = 397

 Score = 37.7 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 54/144 (37%), Gaps = 8/144 (5%)

Query: 216 ILVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
           ++  +  P + +LD   G G      A++     +GI + ++   +A +R+A       I
Sbjct: 158 LVKLALAPDECLLDIGCGWGGLLIRAARQYGVRGVGITLSEEQAALARERVAEAGLADRI 217

Query: 275 ELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRV 334
           E+ +      EP+  F+ +V  G+ +   +           V      +    L  +H +
Sbjct: 218 EIRLQDWLDLEPQPEFDKVVSVGMFE--HVGHQHSARFFERVSH---CLKPGGLMLLHTI 272

Query: 335 GAKVSGSETCNGWNFWYFEKLGEL 358
             +  G    N W   Y    GE+
Sbjct: 273 TGQADGGT--NSWVEKYIFPGGEV 294


>gi|161869353|ref|YP_001598520.1| ribosomal protein L11 methyltransferase [Neisseria meningitidis
           053442]
 gi|161594906|gb|ABX72566.1| ribosomal protein L11 methyltransferase [Neisseria meningitidis
           053442]
          Length = 330

 Score = 37.7 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  + L +  K G+ +LD   GSG     A KL   S +G+++ +  +
Sbjct: 178 GTGSHPTTR---LCLKWLDTQLKNGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAV 234

Query: 259 DIATK 263
                
Sbjct: 235 RAGKD 239


>gi|121634223|ref|YP_974468.1| ribosomal protein L11 methyltransferase [Neisseria meningitidis
           FAM18]
 gi|166223424|sp|A1KS36|PRMA_NEIMF RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|120865929|emb|CAM09666.1| putative ribosomal protein L11 methyltransferase [Neisseria
           meningitidis FAM18]
 gi|261393202|emb|CAX50821.1| ribosomal protein L11 methyltransferase (L11 Mtase) [Neisseria
           meningitidis 8013]
 gi|325131505|gb|EGC54212.1| ribosomal protein L11 methyltransferase [Neisseria meningitidis
           M6190]
 gi|325137551|gb|EGC60133.1| ribosomal protein L11 methyltransferase [Neisseria meningitidis
           ES14902]
 gi|325141598|gb|EGC64063.1| ribosomal protein L11 methyltransferase [Neisseria meningitidis
           961-5945]
 gi|325197639|gb|ADY93095.1| ribosomal protein L11 methyltransferase [Neisseria meningitidis
           G2136]
          Length = 295

 Score = 37.7 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  + L +  K G+ +LD   GSG     A KL   S +G+++ +  +
Sbjct: 143 GTGSHPTTR---LCLKWLDTQLKNGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAV 199

Query: 259 DIATK 263
                
Sbjct: 200 RAGKD 204


>gi|315172489|gb|EFU16506.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX1346]
          Length = 277

 Score = 37.7 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 9/72 (12%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV-AKKLRR---SFIGIEMKQDYIDI 260
           P  + E L+ R L ++      ++D   G+GT     + KL R     I I++ ++ + +
Sbjct: 93  PRPETEELVERCLKANPDTPLTVVD--VGTGTGAIAISLKLARPNWRVIAIDLSEEALTV 150

Query: 261 ATKRIASVQPLG 272
           A +   + Q LG
Sbjct: 151 AKQ---NAQALG 159


>gi|315168547|gb|EFU12564.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX1341]
          Length = 277

 Score = 37.7 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 9/72 (12%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV-AKKLRR---SFIGIEMKQDYIDI 260
           P  + E L+ R L ++      ++D   G+GT     + KL R     I I++ ++ + +
Sbjct: 93  PRPETEELVERCLKANPDTPLTVVD--VGTGTGAIAISLKLARPNWRVIAIDLSEEALTV 150

Query: 261 ATKRIASVQPLG 272
           A +   + Q LG
Sbjct: 151 AKQ---NAQALG 159


>gi|295113545|emb|CBL32182.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus sp. 7L76]
 gi|315161811|gb|EFU05828.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0645]
          Length = 277

 Score = 37.7 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 9/72 (12%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV-AKKLRR---SFIGIEMKQDYIDI 260
           P  + E L+ R L ++      ++D   G+GT     + KL R     I I++ ++ + +
Sbjct: 93  PRPETEELVERCLKANPDTPLTVVD--VGTGTGAIAISLKLARPNWRVIAIDLSEEALTV 150

Query: 261 ATKRIASVQPLG 272
           A +   + Q LG
Sbjct: 151 AKQ---NAQALG 159


>gi|257421857|ref|ZP_05598847.1| protoporphyrinogen oxidase hemK [Enterococcus faecalis X98]
 gi|257163681|gb|EEU93641.1| protoporphyrinogen oxidase hemK [Enterococcus faecalis X98]
 gi|315155438|gb|EFT99454.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0043]
          Length = 277

 Score = 37.7 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 9/72 (12%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV-AKKLRR---SFIGIEMKQDYIDI 260
           P  + E L+ R L ++      ++D   G+GT     + KL R     I I++ ++ + +
Sbjct: 93  PRPETEELVERCLKANPDTPLTVVD--VGTGTGAIAISLKLARPNWRVIAIDLSEEALTV 150

Query: 261 ATKRIASVQPLG 272
           A +   + Q LG
Sbjct: 151 AKQ---NAQALG 159


>gi|257416747|ref|ZP_05593741.1| modification methylase HemK [Enterococcus faecalis AR01/DG]
 gi|257158575|gb|EEU88535.1| modification methylase HemK [Enterococcus faecalis ARO1/DG]
          Length = 277

 Score = 37.7 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 9/72 (12%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV-AKKLRR---SFIGIEMKQDYIDI 260
           P  + E L+ R L ++      ++D   G+GT     + KL R     I I++ ++ + +
Sbjct: 93  PRPETEELVERCLKANPDTPLTVVD--VGTGTGAIAISLKLARPNWRVIAIDLSEEALTV 150

Query: 261 ATKRIASVQPLG 272
           A +   + Q LG
Sbjct: 151 AKQ---NAQALG 159


>gi|257090699|ref|ZP_05585060.1| modification methylase hemK [Enterococcus faecalis CH188]
 gi|312905240|ref|ZP_07764360.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0635]
 gi|256999511|gb|EEU86031.1| modification methylase hemK [Enterococcus faecalis CH188]
 gi|310631477|gb|EFQ14760.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0635]
 gi|315579265|gb|EFU91456.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0630]
          Length = 277

 Score = 37.7 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 9/72 (12%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV-AKKLRR---SFIGIEMKQDYIDI 260
           P  + E L+ R L ++      ++D   G+GT     + KL R     I I++ ++ + +
Sbjct: 93  PRPETEELVERCLKANPDTPLTVVD--VGTGTGAIAISLKLARPNWRVIAIDLSEEALTV 150

Query: 261 ATKRIASVQPLG 272
           A +   + Q LG
Sbjct: 151 AKQ---NAQALG 159


>gi|257087540|ref|ZP_05581901.1| modification methylase HemK [Enterococcus faecalis D6]
 gi|256995570|gb|EEU82872.1| modification methylase HemK [Enterococcus faecalis D6]
 gi|315025303|gb|EFT37235.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX2137]
          Length = 277

 Score = 37.7 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 9/72 (12%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV-AKKLRR---SFIGIEMKQDYIDI 260
           P  + E L+ R L ++      ++D   G+GT     + KL R     I I++ ++ + +
Sbjct: 93  PRPETEELVERCLKANPDTPLTVVD--VGTGTGAIAISLKLARPNWRVIAIDLSEEALTV 150

Query: 261 ATKRIASVQPLG 272
           A +   + Q LG
Sbjct: 151 AKQ---NAQALG 159


>gi|257084461|ref|ZP_05578822.1| modification methylase HemK [Enterococcus faecalis Fly1]
 gi|256992491|gb|EEU79793.1| modification methylase HemK [Enterococcus faecalis Fly1]
          Length = 277

 Score = 37.7 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 9/72 (12%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV-AKKLRR---SFIGIEMKQDYIDI 260
           P  + E L+ R L ++      ++D   G+GT     + KL R     I I++ ++ + +
Sbjct: 93  PRPETEELVERCLKANPDTPLTVVD--VGTGTGAIAISLKLARPNWRVIAIDLSEEALTV 150

Query: 261 ATKRIASVQPLG 272
           A +   + Q LG
Sbjct: 151 AKQ---NAQALG 159


>gi|326201526|ref|ZP_08191397.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Clostridium papyrosolvens DSM 2782]
 gi|325988126|gb|EGD48951.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Clostridium papyrosolvens DSM 2782]
          Length = 395

 Score = 37.7 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 71/195 (36%), Gaps = 36/195 (18%)

Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK 222
           GYTF   A+     +     ++ IP+     +          P  K E     +   + +
Sbjct: 189 GYTFGNLAVMLL--ENPDYVNYYIPLVDEDFQRGEV------PMTKEEVRAVTLAKLAIE 240

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSF-----IGIEMKQDYIDIATK-RIASVQPLGNIEL 276
           P D + D   G+G+   VA ++ R         IE   + +++ +K R+     LG   +
Sbjct: 241 PCDTVFDIGAGTGS---VAIEMARRAFDGSVYAIEKNPEALELISKNRVK----LGAYNV 293

Query: 277 TVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGA 336
            V++G  T P +      E   +     +  + GN++  V     +  G     IH V  
Sbjct: 294 KVVSG--TAPDI-----FEGLPVPDKAFIGGSSGNMADIVRHLTEVNPG-----IHIVAN 341

Query: 337 KVS---GSETCNGWN 348
            ++    +   N + 
Sbjct: 342 AITLESLNAAINSFE 356


>gi|256763196|ref|ZP_05503776.1| modification methylase HemK [Enterococcus faecalis T3]
 gi|256853869|ref|ZP_05559234.1| hemK protein [Enterococcus faecalis T8]
 gi|307290430|ref|ZP_07570345.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0411]
 gi|256684447|gb|EEU24142.1| modification methylase HemK [Enterococcus faecalis T3]
 gi|256710812|gb|EEU25855.1| hemK protein [Enterococcus faecalis T8]
 gi|306498623|gb|EFM68125.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0411]
 gi|315030388|gb|EFT42320.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX4000]
 gi|315150060|gb|EFT94076.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0012]
          Length = 277

 Score = 37.7 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 9/72 (12%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV-AKKLRR---SFIGIEMKQDYIDI 260
           P  + E L+ R L ++      ++D   G+GT     + KL R     I I++ ++ + +
Sbjct: 93  PRPETEELVERCLKANPDTPLTVVD--VGTGTGAIAISLKLARPNWRVIAIDLSEEALTV 150

Query: 261 ATKRIASVQPLG 272
           A +   + Q LG
Sbjct: 151 AKQ---NAQALG 159


>gi|256616930|ref|ZP_05473776.1| modification methylase HemK [Enterococcus faecalis ATCC 4200]
 gi|307276805|ref|ZP_07557916.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX2134]
 gi|256596457|gb|EEU15633.1| modification methylase HemK [Enterococcus faecalis ATCC 4200]
 gi|306506442|gb|EFM75601.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX2134]
          Length = 277

 Score = 37.7 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 9/72 (12%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV-AKKLRR---SFIGIEMKQDYIDI 260
           P  + E L+ R L ++      ++D   G+GT     + KL R     I I++ ++ + +
Sbjct: 93  PRPETEELVERCLKANPDTPLTVVD--VGTGTGAIAVSLKLARPNWRVIAIDLSEEALTV 150

Query: 261 ATKRIASVQPLG 272
           A +   + Q LG
Sbjct: 151 AKQ---NAQALG 159


>gi|255975087|ref|ZP_05425673.1| modification methylase HemK [Enterococcus faecalis T2]
 gi|307285598|ref|ZP_07565737.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0860]
 gi|255967959|gb|EET98581.1| modification methylase HemK [Enterococcus faecalis T2]
 gi|306502822|gb|EFM72087.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0860]
          Length = 277

 Score = 37.7 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 9/72 (12%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV-AKKLRR---SFIGIEMKQDYIDI 260
           P  + E L+ R L ++      ++D   G+GT     + KL R     I I++ ++ + +
Sbjct: 93  PRPETEELVERCLKANPDTPLTVVD--VGTGTGAIAISLKLARPNWRVIAIDLSEEALTV 150

Query: 261 ATKRIASVQPLG 272
           A +   + Q LG
Sbjct: 151 AKQ---NAQALG 159


>gi|227519761|ref|ZP_03949810.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Enterococcus faecalis TX0104]
 gi|227072849|gb|EEI10812.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Enterococcus faecalis TX0104]
          Length = 277

 Score = 37.7 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 9/72 (12%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV-AKKLRR---SFIGIEMKQDYIDI 260
           P  + E L+ R L ++      ++D   G+GT     + KL R     I I++ ++ + +
Sbjct: 93  PRPETEELVERCLKANPDTPLTVVD--VGTGTGAIAISLKLARPNWRVIAIDLSEEALTV 150

Query: 261 ATKRIASVQPLG 272
           A +   + Q LG
Sbjct: 151 AKQ---NAQALG 159


>gi|283796855|ref|ZP_06346008.1| putative DNA methyltransferase [Clostridium sp. M62/1]
 gi|291075261|gb|EFE12625.1| putative DNA methyltransferase [Clostridium sp. M62/1]
          Length = 188

 Score = 37.7 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 61/182 (33%), Gaps = 17/182 (9%)

Query: 36  PAKSVDLIFADPPYNLQLNGQL-YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
           P    D+++ DPP+     G+   RP+ +      ++ D     E +   T   +     
Sbjct: 9   PESKYDILYTDPPWQQGRGGKKAARPNSTGTTVPYETMDVPGIMELHRYVTNELMNE--- 65

Query: 95  VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
             K N  +W I  Y  + +   ++  L + +   ++W K N        RF  AHE L+W
Sbjct: 66  --KHNVFMWTIDKY--LPQTEEIMSLLGYKLHARLIWDKGNGPAPAYTVRF--AHEYLLW 119

Query: 155 -ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL 213
                           A      +   R     P C+       +  E   P  K   L 
Sbjct: 120 FYKKGNIILPDKDKRGAFSTVLRENSKRHHSQKPECA------YQMLETFFPQAKKLELF 173

Query: 214 SR 215
           +R
Sbjct: 174 AR 175


>gi|242278181|ref|YP_002990310.1| RNA methyltransferase, TrmA family [Desulfovibrio salexigens DSM
           2638]
 gi|242121075|gb|ACS78771.1| RNA methyltransferase, TrmA family [Desulfovibrio salexigens DSM
           2638]
          Length = 465

 Score = 37.7 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 55/176 (31%), Gaps = 20/176 (11%)

Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNP--MPNFRGRRFQNAHETLIWASPSPKAKGY 164
            Y     IG    N   +    +V    +   M          +H T+            
Sbjct: 185 DYCAHTNIGAYRHNRGGYWRKLVVRFSHHSGEMMIHLLTGPARSHHTIKGLGKLLFDNIP 244

Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSER----LRNKDGEKLHPTQKPE---------- 210
                          + +   +   +G E     L + DG ++     P           
Sbjct: 245 QLKSFVHSTRKGRADLATGERLISVTGQEHITETLTHADGSEVSYRITPNAFFQTNSKGA 304

Query: 211 ALLSRIL--VSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATK 263
            +L R    +++ K  D++ D F GSG  G  +AK +    IGIE+ ++ +  A  
Sbjct: 305 EVLYRKSSELAAPKADDVVWDLFCGSGGIGMFMAKDVG-KMIGIEVSEESVQSAKD 359


>gi|149193742|ref|ZP_01870840.1| signal-transduction regulatory protein [Caminibacter
          mediatlanticus TB-2]
 gi|149135695|gb|EDM24173.1| signal-transduction regulatory protein [Caminibacter
          mediatlanticus TB-2]
          Length = 371

 Score = 37.7 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 7/46 (15%)

Query: 1  MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
          M +  SLA+      I E+++      +   L+KL   S+DLI  D
Sbjct: 12 MRKSLSLALKSYGFEIVEFRN------ATDALKKLDD-SIDLIITD 50


>gi|29377041|ref|NP_816195.1| hemK protein [Enterococcus faecalis V583]
 gi|227554051|ref|ZP_03984098.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Enterococcus faecalis HH22]
 gi|257419964|ref|ZP_05596958.1| modification methylase hemK [Enterococcus faecalis T11]
 gi|29344507|gb|AAO82265.1| hemK protein [Enterococcus faecalis V583]
 gi|227176799|gb|EEI57771.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Enterococcus faecalis HH22]
 gi|257161792|gb|EEU91752.1| modification methylase hemK [Enterococcus faecalis T11]
 gi|315574711|gb|EFU86902.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0309B]
 gi|315580977|gb|EFU93168.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0309A]
          Length = 277

 Score = 37.7 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 9/72 (12%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV-AKKLRR---SFIGIEMKQDYIDI 260
           P  + E L+ R L ++      ++D   G+GT     + KL R     I I++ ++ + +
Sbjct: 93  PRPETEELVERCLKANPDTPLTVVD--VGTGTGAIAVSLKLARPNWRVIAIDLSEEALTV 150

Query: 261 ATKRIASVQPLG 272
           A +   + Q LG
Sbjct: 151 AKQ---NAQALG 159


>gi|255527106|ref|ZP_05393994.1| Cyclopropane-fatty-acyl-phospholipid synthase [Clostridium
           carboxidivorans P7]
 gi|255509208|gb|EET85560.1| Cyclopropane-fatty-acyl-phospholipid synthase [Clostridium
           carboxidivorans P7]
          Length = 391

 Score = 37.7 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 79/220 (35%), Gaps = 15/220 (6%)

Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
           N +  LI    +       +        N+  ++   WL    + S      + + L   
Sbjct: 94  NKYMDLIKRMSNTIKNSKEYIQHHYDIGNDFYKL---WLDSTMTYSCGYFKANDDSLETA 150

Query: 207 QKPEALLSRILVSST-KPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKR 264
           QK +  +  IL     + G  +LD   G G      AK+ +   +GI +  +      +R
Sbjct: 151 QKNK--VRHILKKLCLEEGQTLLDIGCGWGELIITAAKQYKVKAMGITLSSEQFAKVNER 208

Query: 265 IASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLIS 324
           I   + L ++    LT  R    V F+ +V  G+++        + +I     A   L++
Sbjct: 209 IKD-EGLEDLVQVKLTDYRELENVKFDRIVSVGMVE-----HVGKEHIGEYFNAVNNLLN 262

Query: 325 GTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTL 364
              +  +H + A   G    N W   +    G + S+  L
Sbjct: 263 EKGVSMLHCITAIGEGGT--NTWIDKHIFPGGYIPSVKEL 300


>gi|171185324|ref|YP_001794243.1| hypothetical protein Tneu_0860 [Thermoproteus neutrophilus V24Sta]
 gi|170934536|gb|ACB39797.1| conserved hypothetical protein [Thermoproteus neutrophilus V24Sta]
          Length = 219

 Score = 37.7 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 6/64 (9%)

Query: 209 PEALLSRIL-VSSTKPGDIILDPFFGSG---TSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PE ++ R+L ++  +PG+++ D   GSG        AK+      G+E+++D  + +T R
Sbjct: 10  PEVVVRRMLQLARVQPGEVLYD--LGSGDGRIVIIAAKEFGARAFGVEIRKDLYEQSTAR 67

Query: 265 IASV 268
           I  +
Sbjct: 68  IKDL 71


>gi|170765937|ref|ZP_02900748.1| ribosomal protein L11 methyltransferase [Escherichia albertii
           TW07627]
 gi|170125083|gb|EDS94014.1| ribosomal protein L11 methyltransferase [Escherichia albertii
           TW07627]
          Length = 293

 Score = 37.7 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    +L  + 
Sbjct: 95  WEREWMDNFHPMRFGERLWICPSWRDVPDENAVNVMLDPGLAFGTGTHPTT---SLCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG       K      IGI++    I  +     + +  G  +
Sbjct: 152 LDSLDLEGKTVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRD---NAERNGVSD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L   + +P      +V   ++
Sbjct: 209 RLELYLPKDQPEAMKADVVVANIL 232


>gi|315174009|gb|EFU18026.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TX1346]
          Length = 217

 Score = 37.7 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 6/116 (5%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           +I    G  RL+  DG+   PT          ++     G + LD + GSG     A   
Sbjct: 36  VISGEYGGRRLKALDGDNTRPTTDKVKESIFNMIGPYFEGGMALDLYSGSGGLAIEAVSR 95

Query: 245 RR-SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT-----EPRVAFNLLV 294
                I IE     + +  + IA  +     E+  +   R      E ++ F+L++
Sbjct: 96  GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 151


>gi|299534651|ref|ZP_07047983.1| putative methylase yhhF [Lysinibacillus fusiformis ZC1]
 gi|298730024|gb|EFI70567.1| putative methylase yhhF [Lysinibacillus fusiformis ZC1]
          Length = 178

 Score = 37.7 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 29/88 (32%), Gaps = 5/88 (5%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR---SFIGIEMKQD 256
           G    PT          ++     G + LD F GSG  G   + L R     I IE    
Sbjct: 8   GNTTRPTTDKVKESIFNIIGPFFDGGLALDLFAGSGGLGI--ESLSRGAERAIFIEKDPK 65

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRT 284
              +  + I   +     EL  +  KR 
Sbjct: 66  AFQVLQENIKKCRYEEYTELFRIDAKRA 93


>gi|301096518|ref|XP_002897356.1| tRNA guanosine-2'-O-methyltransferase, putative [Phytophthora
           infestans T30-4]
 gi|262107240|gb|EEY65292.1| tRNA guanosine-2'-O-methyltransferase, putative [Phytophthora
           infestans T30-4]
          Length = 486

 Score = 37.7 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 56/154 (36%), Gaps = 18/154 (11%)

Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED- 177
            +   W +N  ++ K   M   R RR +             K+   TF        ++D 
Sbjct: 111 DDKRSWRINVAIFGKKLSMDEQRERREKFRESLPFAGPVQMKSPDETFLVLEELGLDQDL 170

Query: 178 ---VQMRSDWLIPICSGSERLRNKDGEK----LH---------PTQKPEAL-LSRILVSS 220
              ++ +  + +   +GSE+ R + G +     H         PT     + L    ++ 
Sbjct: 171 HPGMKPKQIFFLRELAGSEKNRGRGGARDLVDQHTLKRRAYIGPTSMESEMALLMCNMAL 230

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            + GD+++DPF G+G+             G ++ 
Sbjct: 231 VQHGDLVIDPFVGTGSVLIPCGTHGAMCYGTDID 264


>gi|242373883|ref|ZP_04819457.1| ribosomal protein L11 methyltransferase [Staphylococcus epidermidis
           M23864:W1]
 gi|242348437|gb|EES40039.1| ribosomal protein L11 methyltransferase [Staphylococcus epidermidis
           M23864:W1]
          Length = 312

 Score = 37.7 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 48/141 (34%), Gaps = 19/141 (13%)

Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL--------------HPTQKPEALLS 214
            A +  N     ++     I    E    +   +L              HPT    ++  
Sbjct: 108 WANEWKNYFHPFKASERFTIVPSWETYEKESNNELCIELDPGMAFGTGDHPTT---SMCL 164

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATKRIASVQPLGN 273
           + +    KP D ++D   GSG     +  +    I  +++ +  +++A +          
Sbjct: 165 KAIEKYVKPTDSVIDVGTGSGILSIASHLIGVKRIKALDIDEMAVNVAKENFKKNHCENA 224

Query: 274 IELTVLTGKRTEPRVAFNLLV 294
           IE       + E +  FN+++
Sbjct: 225 IEAVPGNLLQDEDK-KFNIVI 244


>gi|220906088|ref|YP_002481399.1| SAM-dependent methyltransferase [Cyanothece sp. PCC 7425]
 gi|219862699|gb|ACL43038.1| putative SAM-dependent methyltransferase [Cyanothece sp. PCC 7425]
          Length = 400

 Score = 37.7 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 5   NSLAINENQNSIFEWKDKIIKGNSISVLEKL--PAKSVDLIFADPP 48
            +   N   N +   +   +  +   VL +     ++ DLI  DPP
Sbjct: 258 EAATTNIKLNGLDPNRHTFVTADCFEVLNRYVQQGQTFDLIILDPP 303


>gi|159039128|ref|YP_001538381.1| methyltransferase type 12 [Salinispora arenicola CNS-205]
 gi|157917963|gb|ABV99390.1| Methyltransferase type 12 [Salinispora arenicola CNS-205]
          Length = 201

 Score = 37.7 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 6/116 (5%)

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           +R++ +   P   ILD   G+G  GA       + +G++     ++ A       + L  
Sbjct: 37  ARLVDALVPPSSRILDAGCGTGRVGAALAARGHTVVGVDADPVLVEAAGATYPGPRWLVG 96

Query: 274 IELTVLTGKRTEPRVAFNLLVERG----LIQPGQILTNAQGNISATVCADGTLISG 325
               +      EP   F++ V  G     + PG    +    ++A +  DG +  G
Sbjct: 97  DLAELDLAAAGEPE-PFDVAVIAGNVMTFVAPGTE-ADVLRRVAAHLRPDGLVAVG 150


>gi|113866085|ref|YP_724574.1| SAM-dependent methyltransferase [Ralstonia eutropha H16]
 gi|113524861|emb|CAJ91206.1| SAM-dependent methyltransferase [Ralstonia eutropha H16]
          Length = 296

 Score = 37.7 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 16/108 (14%)

Query: 226 IILDPFFGSGTSGAV-AKKLR--RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
            +LD   G+G++    A+KL       GI++ +  +  A  R    Q  G+    +    
Sbjct: 55  HVLDVGCGTGSTTIALARKLGAQGRCTGIDISEPMLAAARAR---AQHNGSTASFIRADA 111

Query: 283 R--TEPRVAFNLLVERGLIQPGQILTNAQGNISATVC----ADGTLIS 324
           +       +F+ +V R     G +  +      A +      D TL  
Sbjct: 112 QDYAFAPASFDSIVSRL----GVMFFSDPVRAFANLRRAATPDATLHC 155


>gi|120599197|ref|YP_963771.1| 23S rRNA m(2)G2445 methyltransferase [Shewanella sp. W3-18-1]
 gi|229560182|sp|A1RKM2|RLML_SHESW RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|120559290|gb|ABM25217.1| putative RNA methylase [Shewanella sp. W3-18-1]
          Length = 709

 Score = 37.7 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 5/45 (11%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
           K++ A+N  Q   +E+    ++ + +  +     +  DLIF DPP
Sbjct: 585 KDNFALNGLQGKQYEF----VQADCLQWIRDC-NEQFDLIFIDPP 624


>gi|322507810|gb|ADX03264.1| trmB [Acinetobacter baumannii 1656-2]
 gi|323517410|gb|ADX91791.1| tRNA (guanine-N(7)-)-methyltransferase [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 246

 Score = 37.7 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 23/125 (18%)

Query: 18  EWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           E K+ +++  ++I VL ++P  S++ +            QLY P         D W K  
Sbjct: 119 ELKNLRVLDADAIQVLREMPDNSINCV------------QLYFP---------DPWQKKR 157

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            F+         +    + L+  GT      +         + +    + N      S P
Sbjct: 158 HFKR-RFVIHERMQLVEQKLELGGTFHAATDWEPYAEWMLDVLDNRPDLENLAGKGNSYP 216

Query: 137 MPNFR 141
            P +R
Sbjct: 217 RPEWR 221


>gi|297624926|ref|YP_003706360.1| hypothetical protein Trad_2714 [Truepera radiovictrix DSM 17093]
 gi|297166106|gb|ADI15817.1| protein of unknown function DUF559 [Truepera radiovictrix DSM
           17093]
          Length = 1065

 Score = 37.7 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 24/73 (32%)

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
            ++L ++      +LDPF G G     A +L      +++      I    +   Q  G 
Sbjct: 86  RKVLEANGGKPPKVLDPFAGGGAIPLEALRLGCETYALDLNPVAHIIQRATLEYPQKFGQ 145

Query: 274 IELTVLTGKRTEP 286
                +      P
Sbjct: 146 PNSRPVPDYILSP 158


>gi|284162555|ref|YP_003401178.1| RNA methylase [Archaeoglobus profundus DSM 5631]
 gi|284012552|gb|ADB58505.1| putative RNA methylase [Archaeoglobus profundus DSM 5631]
          Length = 369

 Score = 37.7 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 204 HPTQKPEALLSRILVSST-KPGDIILDPFFGSGTSGAVAKKLRRS 247
           HP     A+ S +++ S  K  +I+LDP  GSGT    +  + R+
Sbjct: 170 HPAPLNPAIASALVMLSGWKCDEILLDPMCGSGTILIESAMMGRN 214


>gi|281423909|ref|ZP_06254822.1| putative methyltransferase [Prevotella oris F0302]
 gi|281401997|gb|EFB32828.1| putative methyltransferase [Prevotella oris F0302]
          Length = 176

 Score = 37.7 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ 52
           + E KD +I+G+    L+    +  D IFADPPY L+
Sbjct: 89  LKEDKDLLIRGDVFRFLKSCH-QQFDFIFADPPYALK 124


>gi|158314558|ref|YP_001507066.1| hypothetical protein Franean1_2734 [Frankia sp. EAN1pec]
 gi|158109963|gb|ABW12160.1| hypothetical protein Franean1_2734 [Frankia sp. EAN1pec]
          Length = 269

 Score = 37.7 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%)

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
            ++PGD + DP  G GT  A A   RR  IGI       + A   +   +  G
Sbjct: 58  YSRPGDTVCDPDCGPGTVIAEAVHARRHAIGITTDAGRWETARAALTLAKARG 110


>gi|330508817|ref|YP_004385245.1| methyltransferase [Methanosaeta concilii GP-6]
 gi|328929625|gb|AEB69427.1| methyltransferase, putative [Methanosaeta concilii GP-6]
          Length = 198

 Score = 37.7 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 19/48 (39%)

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
            L +       + D   G+G     A  +    +G+E+ +D +  A K
Sbjct: 38  FLAALRNDLGTVCDLGCGTGVLAIGAALMGARAVGVEIDKDALATARK 85


>gi|317178658|dbj|BAJ56446.1| cyclopropane fatty acid synthase [Helicobacter pylori F30]
          Length = 389

 Score = 37.7 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 63/198 (31%), Gaps = 15/198 (7%)

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM----LQNLNFWILNDIVWRKSNPMPNF 140
            + W     +V+  + +++  G +   F +         ++   +   I     + + + 
Sbjct: 11  FKQWKNGDYQVVFWDNSVYRNGEHSPKFTLKIHRPLKFSDIKKDMSLTIAEAYMDGVIDI 70

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS---------DWLIPICSG 191
            G   +  H   +  +     K                  +           WL    S 
Sbjct: 71  EGSMDEVMHSLYLQTNYEHLHKHDGAKAIQKPIKESSNISKHYDLGNDFYSIWLDETLSY 130

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG-TSGAVAKKLRRSFIG 250
           S     KD + LH  Q  + L   +     KPG+ +LD   G G  S   A++     +G
Sbjct: 131 SCAYFKKDDDTLHAAQL-QKLDHTLKKLHLKPGEKLLDIGCGWGYLSIKAAQEYGAQVMG 189

Query: 251 IEMKQDYIDIATKRIASV 268
           I +  +    A KR+  +
Sbjct: 190 ITISSEQYKQANKRVQEL 207


>gi|238894004|ref|YP_002918738.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238546320|dbj|BAH62671.1| putative methyltransferase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 701

 Score = 37.7 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 20/104 (19%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++++ + +  L +   +  DLIF DPP         +     + DA     D       
Sbjct: 590 HRLMQADVLGWLRE-STEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHIR---- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
                   +   +R+L+  GT+    +          L  L   
Sbjct: 637 -------LMTDLKRLLRKGGTIMFSNNKRGFRMDHDGLAALGLK 673


>gi|315924682|ref|ZP_07920899.1| 23S rRNA (uracil-5-)-methyltransferase [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621581|gb|EFV01545.1| 23S rRNA (uracil-5-)-methyltransferase [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 458

 Score = 37.7 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 206 TQKPEALLSRILVSSTKP-GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           T++ E L  +++  +     + + D + G+GT G       R   GIE   + I  A +
Sbjct: 291 TEQAEKLYRQVIRYANLTGQESVFDLYCGTGTIGICMADRARKVTGIEAVPEAIADAKE 349


>gi|315157726|gb|EFU01743.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0312]
          Length = 504

 Score = 37.7 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 12/101 (11%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            +I++D + G GT G    +  +   GIE+ ++ +  A     +   L NIE    T   
Sbjct: 356 NEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDA----ENNAKLNNIENATFTAGL 411

Query: 284 TEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLIS 324
            E  +    LVE+G +QP  ++ +           DG L++
Sbjct: 412 AEELLPK--LVEKG-LQPDVVVVDPPRKGL-----DGQLVN 444


>gi|196229719|ref|ZP_03128583.1| D12 class N6 adenine-specific DNA methyltransferase [Chthoniobacter
           flavus Ellin428]
 gi|196226045|gb|EDY20551.1| D12 class N6 adenine-specific DNA methyltransferase [Chthoniobacter
           flavus Ellin428]
          Length = 396

 Score = 37.7 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 3/35 (8%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG 55
             + +G+   VL ++     DL + DPPY      
Sbjct: 226 HTVHRGDIFEVLPRIE---ADLAYFDPPYGSNNEK 257


>gi|195153234|ref|XP_002017534.1| GL21470 [Drosophila persimilis]
 gi|194112591|gb|EDW34634.1| GL21470 [Drosophila persimilis]
          Length = 486

 Score = 37.7 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 19/37 (51%)

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            +  + GD++ DPF G+G+    A K     +G ++ 
Sbjct: 207 QAMVREGDLVFDPFVGTGSLLVSAAKFGGYVLGADID 243


>gi|297543642|ref|YP_003675944.1| methyltransferase small [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296841417|gb|ADH59933.1| methyltransferase small [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 248

 Score = 37.7 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 17/109 (15%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFAD-PPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
            E + KII+G+   + + L  +  D I    PPY               V A  D   K 
Sbjct: 91  MEKRIKIIQGDVRGIEKTLGYEKFD-IVTSNPPY-------------MPVKAGFDKKRKS 136

Query: 76  SSFEAYDAF--TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
            +   Y+ +     ++ A  ++LK  G  +++     +  I   L+  N
Sbjct: 137 ENIARYEIYGGLEEFIKAASKLLKFGGKFFMVYRAERLVDILYFLRKYN 185


>gi|188527996|ref|YP_001910683.1| ulcer associated adenine specific DNA methyltransferase
           [Helicobacter pylori Shi470]
 gi|188144236|gb|ACD48653.1| ulcer associated adenine specific DNA methyltransferase
           [Helicobacter pylori Shi470]
          Length = 329

 Score = 37.7 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 52/130 (40%), Gaps = 12/130 (9%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
           +  L +      +    +++ + ++  ++EK+     D+++ DPPYN +  G  Y   ++
Sbjct: 171 QKELILKGADFDLSSNANEVYQQDASELIEKISG---DILYLDPPYNARQYGANYHLLNT 227

Query: 64  LVDAVTDSWDKFSSFEAYDA--FT-RAWLLACRRVLKPNGTL-WVIGSYHNIF-----RI 114
           +      +    +   +Y    F  RA +L     L       ++  SY+N        I
Sbjct: 228 IAAYTPFAPKGKTGLPSYQRSSFCSRAKILNAFENLIKTARFKYIFLSYNNEGLMGETEI 287

Query: 115 GTMLQNLNFW 124
           G +L+    +
Sbjct: 288 GNILKKYGAY 297


>gi|319946766|ref|ZP_08021000.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus australis
           ATCC 700641]
 gi|319746814|gb|EFV99073.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus australis
           ATCC 700641]
          Length = 452

 Score = 37.7 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 56/160 (35%), Gaps = 8/160 (5%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
                S        N +A+           D++     G++   +        T+  E L
Sbjct: 233 FPVIKSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQISGPAFYQVNTEMAEKL 292

Query: 213 LSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
               +  +  K  D+++D + G GT G    K  +   G+E+  + ++ + K  A++  +
Sbjct: 293 YQTAIDFADLKEEDVVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKN-AALNNI 351

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
            N      T +        N L E   IQP  IL +    
Sbjct: 352 TNAHYVCDTAENAM----KNWLKEG--IQPTAILVDPPRK 385


>gi|315587097|gb|ADU41478.1| site-specific DNA-methyltransferase (adenine-specific)
           [Helicobacter pylori 35A]
          Length = 351

 Score = 37.7 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 48/130 (36%), Gaps = 12/130 (9%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN---LQLNGQLYRP 60
           +  L +      +    +++ + ++  ++EK+     D+++ DPPYN      N  L   
Sbjct: 193 QKELLLKGADFDLSSNANEVYQQDASELIEKISG---DILYLDPPYNARQYGANYHLLNT 249

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNIF-----RI 114
             +             S++     +RA +L     L       ++  SY+N        I
Sbjct: 250 IAAYAPFTPKGKTGLPSYQKSSFCSRAKILNAFENLIKTARFKYIFLSYNNEGLMGETEI 309

Query: 115 GTMLQNLNFW 124
           G +L+    +
Sbjct: 310 GNILKKYGTY 319


>gi|288936261|ref|YP_003440320.1| RNA methylase [Klebsiella variicola At-22]
 gi|288890970|gb|ADC59288.1| putative RNA methylase [Klebsiella variicola At-22]
          Length = 701

 Score = 37.7 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 20/104 (19%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++++ + +  L +   +  DLIF DPP         +     + DA     D       
Sbjct: 590 HRLMQADVLGWLRE-STEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHIR---- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
                   +   +R+L+  GT+    +          L  L   
Sbjct: 637 -------LMTDLKRLLRKGGTIMFSNNKRGFRMDHDGLAALGLK 673


>gi|152969534|ref|YP_001334643.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|229560188|sp|A6T742|RLML_KLEP7 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|150954383|gb|ABR76413.1| putative methyltransferase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
          Length = 701

 Score = 37.7 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 20/104 (19%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++++ + +  L +   +  DLIF DPP         +     + DA     D       
Sbjct: 590 HRLMQADVLGWLRE-STEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHIR---- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
                   +   +R+L+  GT+    +          L  L   
Sbjct: 637 -------LMTDLKRLLRKGGTIMFSNNKRGFRMDHDGLAALGLK 673


>gi|308798929|ref|XP_003074244.1| RNA methyltransferase family protein (ISS) [Ostreococcus tauri]
 gi|116000416|emb|CAL50096.1| RNA methyltransferase family protein (ISS) [Ostreococcus tauri]
          Length = 1009

 Score = 37.7 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 222 KPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
              + +LD F G GT G  VA   +R  IG E+  + ++ A +R A +  + N +   + 
Sbjct: 842 DRSETVLDLFCGVGTMGLSVASNAKRV-IGWEVVPEAVEDA-RRNAEINGITNADFYRVD 899

Query: 281 GKRTEP 286
             R  P
Sbjct: 900 LSRLNP 905


>gi|291320736|ref|YP_003516001.1| protoporphirogen oxidase HEMK [Mycoplasma agalactiae]
 gi|290753072|emb|CBH41048.1| Protoporphirogen oxidase HEMK [Mycoplasma agalactiae]
          Length = 240

 Score = 37.7 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 13/102 (12%)

Query: 5   NSLAINENQNSIFEWKD----KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           N   +  N+N +  +K+    +I++ +  + ++       DLI ++PPY L  + +    
Sbjct: 109 NEAIMQANENVVLNFKNTTGIQIVQSDCFNDIK----GKFDLIVSNPPY-LDYDDKDVDE 163

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL 102
                +     + K S +  Y       L   +  L   G L
Sbjct: 164 SVKKFEPEIALFAKDSGWYFY----EKILNEAKHYLNEGGIL 201


>gi|206578159|ref|YP_002239411.1| putative RNA methylase family UPF0020 [Klebsiella pneumoniae 342]
 gi|290510683|ref|ZP_06550053.1| ribosomal RNA large subunit methyltransferase L [Klebsiella sp.
           1_1_55]
 gi|238056567|sp|B5XY56|RLML_KLEP3 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|206567217|gb|ACI08993.1| putative RNA methylase family UPF0020 [Klebsiella pneumoniae 342]
 gi|289777399|gb|EFD85397.1| ribosomal RNA large subunit methyltransferase L [Klebsiella sp.
           1_1_55]
          Length = 701

 Score = 37.7 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 20/104 (19%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++++ + +  L +   +  DLIF DPP         +     + DA     D       
Sbjct: 590 HRLMQADVLGWLRE-STEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHIR---- 636

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
                   +   +R+L+  GT+    +          L  L   
Sbjct: 637 -------LMTDLKRLLRKGGTIMFSNNKRGFRMDHDGLAALGLK 673


>gi|126642707|ref|YP_001085691.1| hypothetical protein A1S_2673 [Acinetobacter baumannii ATCC 17978]
          Length = 195

 Score = 37.7 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 45/140 (32%), Gaps = 22/140 (15%)

Query: 184 WLIPICSGSERL--------RNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGS 234
           WLIP    ++RL         N     +       A+   IL       D ++LD   GS
Sbjct: 13  WLIPPVFPTDRLDDEVIRRIWNDTPYWIFCWASGLAMAQWILAEPHHVKDKVVLDFGAGS 72

Query: 235 GTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
           G     AK    +  I  ++ Q  ++   +       L ++EL  L       +V     
Sbjct: 73  GVVAIAAKMAGAKRVICCDIDQVSLNACRE----NALLNDVELEYLDDLYKAEQVD---- 124

Query: 294 VERGLIQPGQILTNAQGNIS 313
               ++    +L +      
Sbjct: 125 ----VLLAADVLYDQYNRFF 140


>gi|220907414|ref|YP_002482725.1| type 11 methyltransferase [Cyanothece sp. PCC 7425]
 gi|219864025|gb|ACL44364.1| Methyltransferase type 11 [Cyanothece sp. PCC 7425]
          Length = 444

 Score = 37.7 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 49/131 (37%), Gaps = 11/131 (8%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSG--TSGAVAKKLRRSFIGIEMKQDYIDI 260
           +H    P  L  + +VS+     +ILD   GSG  +    A       +GI+  +  +++
Sbjct: 39  IHNLVTPCYLRDQKVVSTDGK--LILDAGCGSGYKSLLLAAANPGAHIVGIDFSETSVNL 96

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEP----RVAFNLLVERGLIQPGQILTNAQGNISATV 316
           A +R+     LGN     +      P    +  +    E   + P Q+   A     A +
Sbjct: 97  ARQRMQ-YHNLGNTSEFHVLSIEELPSLGLQFDYINCDEVLYLLPDQVAGLAAMR--AVL 153

Query: 317 CADGTLISGTE 327
             +G + +   
Sbjct: 154 KPEGVIRANLH 164


>gi|153937911|ref|YP_001389980.1| cyclopropane-fatty-acyl-phospholipid synthase [Clostridium
           botulinum F str. Langeland]
 gi|152933807|gb|ABS39305.1| cyclopropane-fatty-acyl-phospholipid synthase [Clostridium
           botulinum F str. Langeland]
          Length = 392

 Score = 37.7 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 60/304 (19%), Positives = 96/304 (31%), Gaps = 33/304 (10%)

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F ++       V   +GT    G     FRI          IL D          N   
Sbjct: 8   KFLKSIFSDTFEVKFWDGTTEKFGEGDIKFRILINDHLSKSDILKDPFLTFGEAYMNKVI 67

Query: 143 RRFQNAHETL---------IWASPSPKAKGYTFNYDALKAANEDVQMRSD--------WL 185
               N  E +                  K Y     ++K + +D+    D        WL
Sbjct: 68  DFEGNVQEVIESVYRNKDSFLHKACLFEKLYKIVPHSIKNSKKDIHHHYDLGNDFYKLWL 127

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST-KPGDIILDPFFGSGTSGA-VAKK 243
               + S        + L+  Q  +  +  IL      PG  +LD   G G      AKK
Sbjct: 128 DKTMNYSCSYFKSKDDSLYQAQLNK--VDYILKKLNLHPGQKLLDIGCGWGDLIITAAKK 185

Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR-TEPRVAFNLLVERGLIQPG 302
                +GI +  +  +   +RI        +E+ VL  +   +    F  +V  G+I+  
Sbjct: 186 YGVKSLGITLSNEQFNRVNERIKENHLENQVEIRVLDYRELLKTGEKFQRVVSVGMIE-- 243

Query: 303 QILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNG--WNFWYFEKLGELHS 360
                 + NI   + A   L+    +  +H + A+    + C G  W   Y    G + S
Sbjct: 244 ---HVGRKNIPVYMNAVSDLLEENGVCLLHCITAQ----KECEGNQWIKKYIFPGGYIPS 296

Query: 361 INTL 364
           I  L
Sbjct: 297 IREL 300


>gi|146292732|ref|YP_001183156.1| 23S rRNA m(2)G2445 methyltransferase [Shewanella putrefaciens
           CN-32]
 gi|229560179|sp|A4Y5X4|RLML_SHEPC RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|145564422|gb|ABP75357.1| putative RNA methylase [Shewanella putrefaciens CN-32]
 gi|319426036|gb|ADV54110.1| rRNA (guanine-N(2)-)-methyltransferase [Shewanella putrefaciens
           200]
          Length = 709

 Score = 37.7 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 5/45 (11%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
           K++ A+N  Q   +E+    ++ + +  +     +  DLIF DPP
Sbjct: 585 KDNFALNGLQGKQYEF----VQADCLQWIRDC-NEQFDLIFIDPP 624


>gi|195568199|ref|XP_002102105.1| GD19733 [Drosophila simulans]
 gi|194198032|gb|EDX11608.1| GD19733 [Drosophila simulans]
          Length = 488

 Score = 37.7 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 19/37 (51%)

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            +  + GD++ DPF G+G+    A K     +G ++ 
Sbjct: 209 QAMVREGDLVFDPFVGTGSLLVSAAKWGGYVLGADID 245



 Score = 37.3 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 3/83 (3%)

Query: 39  SVDLIFADPPYNLQLNGQLYRPDHS-LVDAVTDSWDKFSSFEAY--DAFTRAWLLACRRV 95
           S D I  DPPY ++   +      S   +  ++S   + S   Y   +     L    + 
Sbjct: 300 SFDCIITDPPYGIREATEKVEKKASVKANTRSESMVHYPSTSHYSLQSLYGDLLEFSAKH 359

Query: 96  LKPNGTLWVIGSYHNIFRIGTML 118
           L+  G L     +H+      ML
Sbjct: 360 LRLGGRLVCWIPFHSEDYDPKML 382


>gi|150400246|ref|YP_001324013.1| methyltransferase small [Methanococcus vannielii SB]
 gi|150012949|gb|ABR55401.1| methyltransferase small [Methanococcus vannielii SB]
          Length = 207

 Score = 37.7 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 57/153 (37%), Gaps = 16/153 (10%)

Query: 199 DGEKLHPTQKPE--------ALLSRILVSSTK--PGDIILDPFFGSGTSGAVAKKLRRSF 248
           D  K HP  K           L S +L+ +        ++D   G+G     AK L   F
Sbjct: 11  DELKPHPNPKAHLEQYSTEGNLASELLLFAEPDIKNSFLIDFGCGTGRFSIGAKLLGAKF 70

Query: 249 -IGIEMKQDYIDIATKRIASVQ---PLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQI 304
            +GI++  + ++ A K   S+        +++  +     E R  +    ++ +IQ    
Sbjct: 71  AVGIDIDFETVETAKKNAESLNTSVDFFKLDIKDVNSNFFEERYEYFKNSKKVIIQ--NP 128

Query: 305 LTNAQGNISATVCADGTLISGTELGSIHRVGAK 337
              AQ   +  +  D  L  G  + +IH    +
Sbjct: 129 PFGAQKKYADRIFLDKALEVGDVVYTIHNTATR 161


>gi|302348394|ref|YP_003816032.1| hypothetical protein ASAC_0594 [Acidilobus saccharovorans 345-15]
 gi|302328806|gb|ADL19001.1| hypothetical protein ASAC_0594 [Acidilobus saccharovorans 345-15]
          Length = 530

 Score = 37.3 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR--SFIGIEMKQDYIDIATKRIASV 268
           S +    ++ G +++DPF GSG   +    L +    IGIE+ ++  ++  K ++S+
Sbjct: 34  SFLKEVPSREGAVLMDPFMGSGVLLSSVDDLVKPSRVIGIEINKEPCELGRKMLSSI 90


>gi|262172902|ref|ZP_06040580.1| ribosomal RNA small subunit methyltransferase D [Vibrio mimicus
          MB-451]
 gi|261893978|gb|EEY39964.1| ribosomal RNA small subunit methyltransferase D [Vibrio mimicus
          MB-451]
          Length = 161

 Score = 37.3 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 1  MSQKNSLAINENQNSIFEWK---DKIIKGNSISVLEKLPAKSVDLIFADPPY 49
          M + N LA N+ + ++   K    ++I  ++++ L +   K  D++F DPP+
Sbjct: 49 MLELNPLAFNQLKTNVQSLKAENIELIHTDALAFLRQ-SGKPYDVVFIDPPF 99


>gi|258622825|ref|ZP_05717842.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258584886|gb|EEW09618.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 199

 Score = 37.3 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 1   MSQKNSLAINENQNSIFEWK---DKIIKGNSISVLEKLPAKSVDLIFADPPY 49
           M + N LA N+ + ++   K    ++I  ++++ L +   K  D++F DPP+
Sbjct: 87  MLELNPLAFNQLKTNVQSLKAENIELIHTDALAFLRQ-SGKPYDVVFIDPPF 137


>gi|258625088|ref|ZP_05720007.1| Ribosomal RNA small subunit methyltransferase D [Vibrio mimicus
           VM603]
 gi|258582639|gb|EEW07469.1| Ribosomal RNA small subunit methyltransferase D [Vibrio mimicus
           VM603]
          Length = 199

 Score = 37.3 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 1   MSQKNSLAINENQNSIFEWK---DKIIKGNSISVLEKLPAKSVDLIFADPPY 49
           M + N LA N+ + ++   K    ++I  ++++ L +   K  D++F DPP+
Sbjct: 87  MLELNPLAFNQLKTNVQSLKAENIELIHTDALAFLRQ-SGKPYDVVFIDPPF 137


>gi|196008631|ref|XP_002114181.1| hypothetical protein TRIADDRAFT_27498 [Trichoplax adhaerens]
 gi|190583200|gb|EDV23271.1| hypothetical protein TRIADDRAFT_27498 [Trichoplax adhaerens]
          Length = 364

 Score = 37.3 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 7/79 (8%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99
            D I  DPPY ++   +          A T  ++    ++   +F         + L+  
Sbjct: 255 FDAIVTDPPYGIREGARKVLSKSDGAFAKTSQYNLSKVYKDLLSF-------AAKHLRMY 307

Query: 100 GTLWVIGSYHNIFRIGTML 118
           G L     +H       ++
Sbjct: 308 GRLVFWLPFHRPSYTDELI 326


>gi|190573823|ref|YP_001971668.1| putative modification methylase [Stenotrophomonas maltophilia
           K279a]
 gi|190011745|emb|CAQ45365.1| putative modification methylase [Stenotrophomonas maltophilia
           K279a]
          Length = 502

 Score = 37.3 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           ILDPF G G+    A    +  +GI++  
Sbjct: 125 ILDPFSGCGSIPIGAAIRGKKSVGIDLNP 153


>gi|118581940|ref|YP_903190.1| hypothetical protein Ppro_3540 [Pelobacter propionicus DSM 2379]
 gi|118504650|gb|ABL01133.1| SAM-dependent methyltransferase [Pelobacter propionicus DSM 2379]
          Length = 409

 Score = 37.3 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKL--PAKSVDLIFADPP 48
           N   N +   + + I G+ ++VL +L    +  D+I  DPP
Sbjct: 265 NFGINRLNPKRHEFITGDCLAVLCQLAQKGQGFDVILMDPP 305


>gi|307708648|ref|ZP_07645111.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
           NCTC 12261]
 gi|307615222|gb|EFN94432.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
           NCTC 12261]
          Length = 459

 Score = 37.3 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 53/146 (36%), Gaps = 8/146 (5%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGD 225
           N +A+           D++     G+             T+  E L    +  +  K  D
Sbjct: 250 NTNAIFGKEWRTLYGQDYITDQMLGTNYQIAGPAFYQVNTEMAEKLYQTAIDFAELKEDD 309

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           +++D + G GT G    K  +   G+E+  + ++ + K  A +  + N      T +   
Sbjct: 310 VVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSKKN-AQLNNISNAHYVCDTAEN-- 366

Query: 286 PRVAFNLLVERGLIQPGQILTNAQGN 311
              A    ++ G IQP  IL +    
Sbjct: 367 ---AMKNWLKDG-IQPSLILVDPPRK 388


>gi|261838531|gb|ACX98297.1| type II m6A methylase [Helicobacter pylori 51]
          Length = 327

 Score = 37.3 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 52/130 (40%), Gaps = 12/130 (9%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
           +  L +      +    +++ + ++  ++EK+     D+++ DPPYN +  G  Y   ++
Sbjct: 169 QKELLLKGADFDLSSNANEVYQQDASELIEKISG---DILYLDPPYNARQYGANYHLLNT 225

Query: 64  LVDAVTDSWDKFSSFEAYDA--FT--RAWLLACRRVLKPNGTLWVIGSYHNIF-----RI 114
           +      +    +   +Y    F      L A   ++K     ++  SY+N        I
Sbjct: 226 IAAYTPFAPKGKTGLPSYQKSSFCSRTKILNAFESLIKTARFKYIFLSYNNEGLMGETEI 285

Query: 115 GTMLQNLNFW 124
           G +L+    +
Sbjct: 286 GNILKKYGAY 295


>gi|257074528|ref|YP_003162925.1| phage DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257048749|gb|ACV37934.1| phage DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 225

 Score = 37.3 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 12/91 (13%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY--NLQLNGQLYRPDHSLVDAVT---------- 69
           +++ G++++ LE+    S +L+++DPPY    + NG++YR ++S  D             
Sbjct: 66  ELVHGDAVAFLERFTFSSGELVYSDPPYLAETRRNGKIYRHEYSDRDHDRLLSILAALPC 125

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNG 100
                    E Y  +   W L         G
Sbjct: 126 MVMVSGYDSELYREWLADWRLVTFSAKTHFG 156


>gi|229520525|ref|ZP_04409949.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio cholerae TM
           11079-80]
 gi|229342349|gb|EEO07343.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio cholerae TM
           11079-80]
          Length = 708

 Score = 37.3 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 20/103 (19%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + + ++ + +  L    ++  DLIF DPP         +     +        D  +   
Sbjct: 595 QHQYVQADCLQWLTNAQSQY-DLIFIDPP--------TFSNSKRMEQTFDVQRDHVT--- 642

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                    +   +R+L+P GT+    +  +       LQ L 
Sbjct: 643 --------LMTNLKRLLRPEGTIVFSNNKRHFKMDMEALQALG 677


>gi|332969397|gb|EGK08422.1| ribosomal protein L11 methyltransferase [Kingella kingae ATCC
           23330]
          Length = 295

 Score = 37.3 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT     L  + L  + K G+ +LD   GSG     A KL   S  G+++    I
Sbjct: 143 GTGSHPTT---HLCLQWLDQNLKGGETVLDYGCGSGILAIAALKLGAGSATGVDIDPQAI 199

Query: 259 D 259
            
Sbjct: 200 K 200


>gi|326329432|ref|ZP_08195756.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Nocardioidaceae bacterium Broad-1]
 gi|325952758|gb|EGD44774.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Nocardioidaceae bacterium Broad-1]
          Length = 188

 Score = 37.3 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSG-TSGAVAKKLR--RSFIGIEMKQDYIDIATKRI 265
           P  +   + +    PGD +LD   GSG T+  +A       S +G+E++   +    + +
Sbjct: 42  PRTVADMLHLLQVAPGDKVLDVGSGSGWTTALLAHLTGPAGSVVGVELEPSLVRFGRRNL 101

Query: 266 ASV-QPLGNIELT 277
           A+  QP   IE  
Sbjct: 102 AATHQPWARIEKA 114


>gi|315613133|ref|ZP_07888043.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           ATCC 49296]
 gi|315314695|gb|EFU62737.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           ATCC 49296]
          Length = 452

 Score = 37.3 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 10/159 (6%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGD 225
           N +A+           D++     G++            TQ  E L    +  +  +  D
Sbjct: 247 NTNAIFGKEWRTLYGQDYITDQMFGNDFQIAGPAFYQVNTQMAEKLYQTAIDFAELREDD 306

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-----IATKRIASVQPLGNIELTVLT 280
           +++D + G GT G    K  +   G+EM  + ++      A   I +   + +     + 
Sbjct: 307 VVIDAYSGIGTIGLSVAKHVKEVYGVEMIPEAVENSQKNAALNNITNAHYVCDTAENAMK 366

Query: 281 GKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
               E      +LV+     P + LT +    SA   AD
Sbjct: 367 NWLKEGIQPTVILVD----PPRKGLTESFIKASAQTGAD 401


>gi|304385138|ref|ZP_07367484.1| probable methyltransferase [Pediococcus acidilactici DSM 20284]
 gi|304329332|gb|EFL96552.1| probable methyltransferase [Pediococcus acidilactici DSM 20284]
          Length = 184

 Score = 37.3 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 2/33 (6%)

Query: 22  KIIKGNSISVLEKLPAKSV--DLIFADPPYNLQ 52
           +IIKG++  V+  L  ++V  +++F DPPY LQ
Sbjct: 94  QIIKGDTKKVIHNLAKQAVSYNMVFFDPPYALQ 126


>gi|270291425|ref|ZP_06197647.1| RsmD family RNA methyltransferase [Pediococcus acidilactici 7_4]
 gi|270280271|gb|EFA26107.1| RsmD family RNA methyltransferase [Pediococcus acidilactici 7_4]
          Length = 184

 Score = 37.3 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 2/33 (6%)

Query: 22  KIIKGNSISVLEKLPAKSV--DLIFADPPYNLQ 52
           +IIKG++  V+  L  ++V  +++F DPPY LQ
Sbjct: 94  QIIKGDTKKVIHNLAKQAVSYNMVFFDPPYALQ 126


>gi|189219100|ref|YP_001939741.1| SAM-dependent methyltransferase [Methylacidiphilum infernorum V4]
 gi|189185958|gb|ACD83143.1| SAM-dependent methyltransferase [Methylacidiphilum infernorum V4]
          Length = 219

 Score = 37.3 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 46/110 (41%), Gaps = 15/110 (13%)

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSF-----IGIEMKQDYIDIATKRIASVQPLGNIEL 276
               ++LD   G G +  +A +  R +     IG++     + +A +RI     L +IEL
Sbjct: 42  FKEGLVLD--MGCG-TADIAIRFARKYPRAKIIGVDGSPAMLALAQQRIEENHLLASIEL 98

Query: 277 TVLTGKRTEPRVAFNLLVERGLIQ---PGQILTNAQGNISATVCADGTLI 323
                       +F++L+   L+      + L  +  N+S     +G+L+
Sbjct: 99  IKGRLPYWNYPRSFDVLISNSLLHHLPSAKELWTSLRNLS----KNGSLV 144


>gi|167377678|ref|XP_001734495.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165903953|gb|EDR29331.1| hypothetical protein EDI_071410 [Entamoeba dispar SAW760]
          Length = 499

 Score = 37.3 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 10/119 (8%)

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
           + +      ++D   G G      +K     IGIE K++YI    +R   V  +   E  
Sbjct: 159 LINQYWKGCVIDIGSGKGYLMEELQKKGIECIGIEGKEEYIKAMKERNQKVAKIEKFE-- 216

Query: 278 VLTGKRTEPRVAFNLL----VERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIH 332
                + E +VA   L         ++  Q LT+++  +   + A G L       SIH
Sbjct: 217 ----PKKEIKVASEYLSSDITSEAFMEIVQKLTSSKEFLMTCLHACGNLTPTLLRLSIH 271


>gi|110680008|ref|YP_683015.1| hypothetical protein RD1_2799 [Roseobacter denitrificans OCh 114]
 gi|109456124|gb|ABG32329.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
          Length = 407

 Score = 37.3 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 25  KGNSISVLEKL--PAKSVDLIFADPP 48
           +G++  VL  L       DL+  DPP
Sbjct: 289 QGDAFEVLAALAQEGAQFDLVICDPP 314


>gi|308184956|ref|YP_003929089.1| adenine-specific methyltransferase [Helicobacter pylori SJM180]
 gi|308060876|gb|ADO02772.1| adenine-specific methyltransferase [Helicobacter pylori SJM180]
          Length = 329

 Score = 37.3 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 48/113 (42%), Gaps = 12/113 (10%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +++ + ++  ++EK+     D+++ DPPYN +  G  Y   +++      +    +   +
Sbjct: 188 NEVYQQDASELIEKISG---DILYLDPPYNARQYGANYHLLNTIAAYTPFAPKGKTGLPS 244

Query: 81  YDA--FT-RAWLLACRRVLKPNGTL-WVIGSYHNIF-----RIGTMLQNLNFW 124
           Y    F  RA +L     L       ++  SY+N        IG +L+    +
Sbjct: 245 YQKSSFCSRAKILNAFEKLIKTARFKYIFLSYNNEGLMGETEIGNILKKYGAY 297


>gi|300175608|emb|CBK20919.2| unnamed protein product [Blastocystis hominis]
          Length = 321

 Score = 37.3 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%)

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            +LV       ++LD   GSG SG         +IG ++    +DIA 
Sbjct: 41  DLLVLPEGEPALLLDIGCGSGLSGECISNRGHHWIGCDISPSMLDIAI 88


>gi|255642415|gb|ACU21471.1| unknown [Glycine max]
          Length = 290

 Score = 37.3 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 212 LLSRILVSSTKPGDII----LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           L  R L     P D +    LD   GSG SG    +    +IG+++    +++A +R
Sbjct: 36  LSERALELLALPDDSVPKLLLDIGCGSGLSGETLSENGHHWIGLDISASMLNVAVER 92


>gi|242398439|ref|YP_002993863.1| 23S rRNA (Uracil-5-)-methyltransferase [Thermococcus sibiricus MM
           739]
 gi|242264832|gb|ACS89514.1| 23S rRNA (Uracil-5-)-methyltransferase [Thermococcus sibiricus MM
           739]
          Length = 419

 Score = 37.3 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK--RIASV 268
            G+ +LD + G GT G    +      GIE+    +++A +  RI  V
Sbjct: 276 EGEKVLDLYSGVGTFGIYLARRGFKVEGIEVNPFAVEMANRNARINEV 323


>gi|167749830|ref|ZP_02421957.1| hypothetical protein EUBSIR_00798 [Eubacterium siraeum DSM 15702]
 gi|167657142|gb|EDS01272.1| hypothetical protein EUBSIR_00798 [Eubacterium siraeum DSM 15702]
          Length = 249

 Score = 37.3 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
             RI+ S      I+LD   G+G+       L    IG+++  + + +A +     +P  
Sbjct: 27  YDRIITSHGGKRGILLDLACGTGSMSMQLSALGYDVIGVDLSTEMLSVAKE-----KPHK 81

Query: 273 NIEL 276
           NIE 
Sbjct: 82  NIEY 85


>gi|127514005|ref|YP_001095202.1| peptidase S10, serine carboxypeptidase [Shewanella loihica PV-4]
 gi|126639300|gb|ABO24943.1| peptidase S10, serine carboxypeptidase [Shewanella loihica PV-4]
          Length = 533

 Score = 37.3 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 43/137 (31%), Gaps = 8/137 (5%)

Query: 34  KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
            +  KS DL+F DP   +         +H       D W      ++   F R WL+   
Sbjct: 170 SMLDKS-DLVFIDP---VGTGFSRALGEHK----GQDFWGVKEDAQSIAEFIRRWLIEHG 221

Query: 94  RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           R   P               +   LQ+    I  + V   S+ +     R     ++  I
Sbjct: 222 RWNSPKYIAGESYGTTRAAALVDELQSGWTDISVNGVMLISSILDFSHARYQPGNNQPYI 281

Query: 154 WASPSPKAKGYTFNYDA 170
              P+  A  +  +  A
Sbjct: 282 GFLPTMAATAFYHDRVA 298


>gi|315148531|gb|EFT92547.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX4244]
          Length = 277

 Score = 37.3 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV-AKKLRR---SFIGIEMKQDYIDI 260
           P  + E L+ R L ++      ++D   G+GT     + KL R     I I++ ++ + +
Sbjct: 93  PRPETEELVERCLKANPDTPLTVVD--VGTGTGAIAISLKLARPNWRVIAIDLSEEALTV 150

Query: 261 ATK 263
           A +
Sbjct: 151 AKQ 153


>gi|257081919|ref|ZP_05576280.1| modification methylase HemK [Enterococcus faecalis E1Sol]
 gi|256989949|gb|EEU77251.1| modification methylase HemK [Enterococcus faecalis E1Sol]
          Length = 277

 Score = 37.3 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV-AKKLRR---SFIGIEMKQDYIDI 260
           P  + E L+ R L ++      ++D   G+GT     + KL R     I I++ ++ + +
Sbjct: 93  PRPETEELVERCLKANPDTPLTVVD--VGTGTGAIAISLKLARPNWRVIAIDLSEEALTV 150

Query: 261 ATK 263
           A +
Sbjct: 151 AKQ 153


>gi|256961204|ref|ZP_05565375.1| modification methylase HemK [Enterococcus faecalis Merz96]
 gi|293384153|ref|ZP_06630047.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           R712]
 gi|293386967|ref|ZP_06631536.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           S613]
 gi|312907896|ref|ZP_07766879.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           DAPTO 512]
 gi|312978575|ref|ZP_07790313.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecalis DAPTO 516]
 gi|256951700|gb|EEU68332.1| modification methylase HemK [Enterococcus faecalis Merz96]
 gi|291078633|gb|EFE15997.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           R712]
 gi|291083637|gb|EFE20600.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           S613]
 gi|310625987|gb|EFQ09270.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           DAPTO 512]
 gi|311288724|gb|EFQ67280.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecalis DAPTO 516]
          Length = 277

 Score = 37.3 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV-AKKLRR---SFIGIEMKQDYIDI 260
           P  + E L+ R L ++      ++D   G+GT     + KL R     I I++ ++ + +
Sbjct: 93  PRPETEELVERCLKANPDTPLTVVD--VGTGTGAIAISLKLARPNWRVIAIDLSEEALTV 150

Query: 261 ATK 263
           A +
Sbjct: 151 AKQ 153


>gi|153827034|ref|ZP_01979701.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|149739116|gb|EDM53406.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
          Length = 708

 Score = 37.3 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 20/103 (19%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + + ++ + +  L    ++  DLIF DPP         +     +        D  +   
Sbjct: 595 QHQYVQADCLQWLANAQSQY-DLIFIDPP--------TFSNSKRMEQTFDVQRDHVT--- 642

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                    +   +R+L+P GT+    +  +       L  L 
Sbjct: 643 --------LMTNLKRLLRPEGTIVFSNNKRHFKMDMEALHALG 677


>gi|11497821|ref|NP_069043.1| hypothetical protein AF0205 [Archaeoglobus fulgidus DSM 4304]
 gi|2650438|gb|AAB91027.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 204

 Score = 37.3 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 28/64 (43%)

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
           D+I+D   G+G        L    +G+++  + + IA    A +    +   + ++  R 
Sbjct: 47  DLIIDLGCGTGILAIACSLLGHYSVGVDLDVEALKIARDNAAELGVEADFVRSEVSKFRC 106

Query: 285 EPRV 288
           + +V
Sbjct: 107 KRKV 110


>gi|47092614|ref|ZP_00230402.1| type III restriction system methylase [Listeria monocytogenes str.
           4b H7858]
 gi|47019042|gb|EAL09787.1| type III restriction system methylase [Listeria monocytogenes str.
           4b H7858]
          Length = 209

 Score = 37.3 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 226 IILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
           +ILD F GSGT+     +        R FI   + ++  + +  R      +  I    +
Sbjct: 1   MILDFFAGSGTTADAVMQTNSEDGGNRKFIVATLDEETPENSEARKVGYSTIDQISRERI 60

Query: 280 TGKRTEPRV 288
             +R   ++
Sbjct: 61  --RRAAEKI 67


>gi|281210052|gb|EFA84220.1| hypothetical protein PPL_03297 [Polysphondylium pallidum PN500]
          Length = 278

 Score = 37.3 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 26/44 (59%)

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            K G ++LD   GSG SG V       +IG+++ +D +D++ +R
Sbjct: 48  DKEGLLLLDIGCGSGISGDVITDHGHEWIGMDISKDMLDVSIER 91


>gi|256960127|ref|ZP_05564298.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|257415561|ref|ZP_05592555.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
 gi|293382494|ref|ZP_06628428.1| conserved hypothetical protein [Enterococcus faecalis R712]
 gi|293387905|ref|ZP_06632444.1| conserved hypothetical protein [Enterococcus faecalis S613]
 gi|312906902|ref|ZP_07765899.1| ParB-like nuclease domain protein [Enterococcus faecalis DAPTO 512]
 gi|312978843|ref|ZP_07790569.1| ParB-like nuclease domain protein [Enterococcus faecalis DAPTO 516]
 gi|256950623|gb|EEU67255.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|257157389|gb|EEU87349.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
 gi|291080042|gb|EFE17406.1| conserved hypothetical protein [Enterococcus faecalis R712]
 gi|291082752|gb|EFE19715.1| conserved hypothetical protein [Enterococcus faecalis S613]
 gi|310627156|gb|EFQ10439.1| ParB-like nuclease domain protein [Enterococcus faecalis DAPTO 512]
 gi|311288280|gb|EFQ66836.1| ParB-like nuclease domain protein [Enterococcus faecalis DAPTO 516]
 gi|315032543|gb|EFT44475.1| ParB-like nuclease domain protein [Enterococcus faecalis TX0017]
 gi|323480184|gb|ADX79623.1| parB-like nuclease domain protein [Enterococcus faecalis 62]
          Length = 444

 Score = 37.3 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 55/160 (34%), Gaps = 21/160 (13%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           I  +S+++   +  +S DL+F  PPY    + ++Y  D   +  +        S+E +  
Sbjct: 278 ICDDSLNIDHHIEDESQDLLFTCPPY---ADLEVYSDDERDISNM--------SYEEFAE 326

Query: 84  FTRAWLLACRRVLKPNG----TLWVIGSYHNIFR-----IGTMLQNLNFWILNDIVWRKS 134
                L    + LK N     T+  +      ++               +  ND++   +
Sbjct: 327 VYSEILKRSAKKLKDNRFAVVTISDVRDKKGFYQDLTGLTKRAFSTEGLYFYNDMILLNA 386

Query: 135 NPMPNFRGRR-FQNAHETLIWASPSPKAKGYTFNYDALKA 173
               + R RR   N   T +  +     KG   N +    
Sbjct: 387 VGSGSLRARRLMNNRKVTRMHQNVLVFYKGNPKNINQHFE 426


>gi|148358162|ref|YP_001249369.1| N6-adenine-specific DNA methylase [Legionella pneumophila str.
           Corby]
 gi|296105520|ref|YP_003617220.1| N6-adenine-specific DNA methylase [Legionella pneumophila 2300/99
           Alcoy]
 gi|229560189|sp|A5I9H3|RLML_LEGPC RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|148279935|gb|ABQ54023.1| N6-adenine-specific DNA methylase and SAM-dependent
           methyltransferases [Legionella pneumophila str. Corby]
 gi|295647421|gb|ADG23268.1| N6-adenine-specific DNA methylase [Legionella pneumophila 2300/99
           Alcoy]
          Length = 707

 Score = 37.3 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 21/113 (18%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N I   K + ++ +    ++ +     D+IF DPP         +     + D + 
Sbjct: 582 NFRLNDIDLSKHQFLQYDCKEWMK-ITRDKFDVIFLDPP--------SFSNSKRMSDILD 632

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
              D  S            +    R+L PNG L+   +    F++  ML+   
Sbjct: 633 IQRDHVS-----------LINMAMRLLNPNGVLY-FSTNLRQFKLEPMLKEKY 673


>gi|291230494|ref|XP_002735219.1| PREDICTED: tRNA methyltransferase 5-like [Saccoglossus kowalevskii]
          Length = 445

 Score = 37.3 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 1/76 (1%)

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
           +VS  + GD+I D F G G     A K     +  ++  +      +R   +  + N   
Sbjct: 225 IVSMLQKGDVIYDVFAGVGPFAVPAAKKGCKVLANDLNPESFKW-LQRNVKLNKVNNRVQ 283

Query: 277 TVLTGKRTEPRVAFNL 292
                 R   +V F  
Sbjct: 284 CFNLDGREFIKVVFKD 299


>gi|226324644|ref|ZP_03800162.1| hypothetical protein COPCOM_02429 [Coprococcus comes ATCC 27758]
 gi|225207092|gb|EEG89446.1| hypothetical protein COPCOM_02429 [Coprococcus comes ATCC 27758]
          Length = 215

 Score = 37.3 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 7/31 (22%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKS-VDLIFAD 46
            E K  +++G+++ +++ +P  +  D +F D
Sbjct: 103 MEQKITLLEGDALEIMKGMPDDAGFDFVFMD 133


>gi|153830986|ref|ZP_01983653.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|148873526|gb|EDL71661.1| conserved hypothetical protein [Vibrio cholerae 623-39]
          Length = 708

 Score = 37.3 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 20/103 (19%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + + ++ + +  L    ++  DLIF DPP         +     +        D  +   
Sbjct: 595 QHQYVQADCLQWLANAQSQY-DLIFIDPP--------TFSNSKRMEQTFDVQRDHVT--- 642

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                    +   +R+L+P GT+    +  +       L  L 
Sbjct: 643 --------LMTNLKRLLRPEGTIVFSNNKRHFKMDMEALHALG 677


>gi|15837413|ref|NP_298101.1| hypothetical protein XF0811 [Xylella fastidiosa 9a5c]
 gi|9105711|gb|AAF83621.1|AE003921_1 conserved hypothetical protein [Xylella fastidiosa 9a5c]
          Length = 286

 Score = 37.3 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 26  GNSISVLEKLPAKSVDLIFADPP 48
           G+    +E LP  SVD I  DPP
Sbjct: 194 GDIAQAIEDLPDASVDAILHDPP 216


>gi|257059901|ref|YP_003137789.1| methyltransferase type 12 [Cyanothece sp. PCC 8802]
 gi|256590067|gb|ACV00954.1| Methyltransferase type 12 [Cyanothece sp. PCC 8802]
          Length = 441

 Score = 37.3 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 12/75 (16%)

Query: 204 HPTQKPEALLSRIL----------VSSTKPGDIILDPFFGSG-TSGAVAKKL-RRSFIGI 251
           +P  KP +L    L          V S+    +ILD   GSG T+ ++A+       IGI
Sbjct: 29  NPKTKPISLYHESLATAFYRRNKTVISSTQDKLILDVACGSGYTTLSLAEANPGAKIIGI 88

Query: 252 EMKQDYIDIATKRIA 266
           ++ Q  +++A  R+ 
Sbjct: 89  DISQASLEMAEARLK 103


>gi|152980208|ref|YP_001354826.1| methylase [Janthinobacterium sp. Marseille]
 gi|151280285|gb|ABR88695.1| methylase [Janthinobacterium sp. Marseille]
          Length = 198

 Score = 37.3 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 2/29 (6%)

Query: 23  IIKGNSISVLEKLP--AKSVDLIFADPPY 49
           I++G++++ ++ +   A   DLIF DPPY
Sbjct: 102 IVRGDALTAIQGMARNAAKFDLIFLDPPY 130


>gi|254226687|ref|ZP_04920265.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|125620801|gb|EAZ49157.1| conserved hypothetical protein [Vibrio cholerae V51]
          Length = 708

 Score = 37.3 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 20/103 (19%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + + ++ + +  L    ++  DLIF DPP         +     +        D  +   
Sbjct: 595 QHQYVQADCLQWLANAQSQY-DLIFIDPP--------TFSNSKRMEQTFDVQRDHVT--- 642

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                    +   +R+L+P GT+    +  +       L  L 
Sbjct: 643 --------LMTNLKRLLRPEGTIVFSNNKRHFKMDMEALHALG 677


>gi|15641497|ref|NP_231129.1| 23S rRNA m(2)G2445 methyltransferase [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121588156|ref|ZP_01677902.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121728722|ref|ZP_01681738.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|147673350|ref|YP_001217041.1| 23S rRNA m(2)G2445 methyltransferase [Vibrio cholerae O395]
 gi|153818781|ref|ZP_01971448.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|227081647|ref|YP_002810198.1| hypothetical protein VCM66_1431 [Vibrio cholerae M66-2]
 gi|229508562|ref|ZP_04398065.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio cholerae BX
           330286]
 gi|229511367|ref|ZP_04400846.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio cholerae
           B33]
 gi|229518507|ref|ZP_04407950.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio cholerae
           RC9]
 gi|229607967|ref|YP_002878615.1| 23S rRNA m(2)G2445 methyltransferase [Vibrio cholerae MJ-1236]
 gi|254848609|ref|ZP_05237959.1| 23S rRNA m(2) methyltransferase [Vibrio cholerae MO10]
 gi|255745069|ref|ZP_05419019.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio cholera
           CIRS 101]
 gi|262155827|ref|ZP_06028950.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio cholerae
           INDRE 91/1]
 gi|262169522|ref|ZP_06037213.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio cholerae
           RC27]
 gi|298498423|ref|ZP_07008230.1| 23S rRNA m(2) methyltransferase [Vibrio cholerae MAK 757]
 gi|81858107|sp|Q9KRZ5|RLML_VIBCH RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|229560186|sp|A5F836|RLML_VIBC3 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|9655989|gb|AAF94643.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547601|gb|EAX57701.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121628982|gb|EAX61432.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|126510686|gb|EAZ73280.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|146315233|gb|ABQ19772.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|227009535|gb|ACP05747.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|227013404|gb|ACP09614.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|229343196|gb|EEO08171.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio cholerae
           RC9]
 gi|229351332|gb|EEO16273.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio cholerae
           B33]
 gi|229354516|gb|EEO19439.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio cholerae BX
           330286]
 gi|229370622|gb|ACQ61045.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio cholerae
           MJ-1236]
 gi|254844314|gb|EET22728.1| 23S rRNA m(2) methyltransferase [Vibrio cholerae MO10]
 gi|255737540|gb|EET92935.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio cholera
           CIRS 101]
 gi|262021756|gb|EEY40466.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio cholerae
           RC27]
 gi|262030418|gb|EEY49059.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio cholerae
           INDRE 91/1]
 gi|297542756|gb|EFH78806.1| 23S rRNA m(2) methyltransferase [Vibrio cholerae MAK 757]
          Length = 708

 Score = 37.3 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 20/103 (19%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + + ++ + +  L    ++  DLIF DPP         +     +        D  +   
Sbjct: 595 QHQYVQADCLQWLANAQSQY-DLIFIDPP--------TFSNSKRMEQTFDVQRDHVT--- 642

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                    +   +R+L+P GT+    +  +       L  L 
Sbjct: 643 --------LMTNLKRLLRPEGTIVFSNNKRHFKMDMEALHALG 677


>gi|332983382|ref|YP_004464823.1| hypothetical protein Mahau_2879 [Mahella australiensis 50-1 BON]
 gi|332701060|gb|AEE98001.1| protein of unknown function DUF1156 [Mahella australiensis 50-1
           BON]
          Length = 920

 Score = 37.3 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 18/49 (36%)

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
             +      +LDPF G G+    A++L       ++    + I    I 
Sbjct: 107 KYAVNELPPVLDPFCGGGSIPFEAQRLGLKAYAGDLNPVAVLITKAMIE 155


>gi|217974485|ref|YP_002359236.1| peptidase S10 serine carboxypeptidase [Shewanella baltica OS223]
 gi|217499620|gb|ACK47813.1| peptidase S10 serine carboxypeptidase [Shewanella baltica OS223]
          Length = 513

 Score = 37.3 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 41/134 (30%), Gaps = 8/134 (5%)

Query: 34  KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
            +  +S DL+F DP     +     R       A  D W      ++   F R WL+  +
Sbjct: 150 SMLDES-DLVFIDP-----VGTGFSRALGDKKGA--DFWGVKEDAQSIAEFIRRWLIEHK 201

Query: 94  RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           R   P               +   LQ     I  + +   S+ +     R     +   I
Sbjct: 202 RWNSPKYLAGESYGTTRAAALVNELQGGWTDISVNGIMLISSILDFSHARYQPGNNLPYI 261

Query: 154 WASPSPKAKGYTFN 167
              P+  A  +  N
Sbjct: 262 GFLPTMAATAFYHN 275


>gi|296161522|ref|ZP_06844327.1| methyltransferase [Burkholderia sp. Ch1-1]
 gi|295888166|gb|EFG67979.1| methyltransferase [Burkholderia sp. Ch1-1]
          Length = 204

 Score = 37.3 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 1   MSQKNSLAINE---NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ 56
           M ++N+ A+ +   NQ  +     +I + + + +   L   S D++F DPP+   L G+
Sbjct: 90  MVERNARAVGQLRANQERLSARTIEIAEADGLRLAASLAPGSFDVVFLDPPFGADLLGK 148


>gi|21673792|ref|NP_661857.1| methylase, putative [Chlorobium tepidum TLS]
 gi|21646921|gb|AAM72199.1| methylase, putative [Chlorobium tepidum TLS]
          Length = 184

 Score = 37.3 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPY 49
           + +  +  + L++    S DL+F DPPY
Sbjct: 96  RFVMADVTAFLKR-EEGSFDLVFCDPPY 122


>gi|307706544|ref|ZP_07643351.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
           SK321]
 gi|307617999|gb|EFN97159.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
           SK321]
          Length = 451

 Score = 37.3 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 53/146 (36%), Gaps = 8/146 (5%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGD 225
           N +A+           D++     G++            T+  E L    +  +  K  D
Sbjct: 247 NTNAIFGKEWRTLYGQDYITDQMLGNDYQIAGPAFYQVNTEMAEKLYQTAIDFAELKEDD 306

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           +++D + G GT G    K  +   G+E+  + ++ + K  A +  + N      T +   
Sbjct: 307 VVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSKKN-AQLNNISNAHYVCDTAENAM 365

Query: 286 PRVAFNLLVERGLIQPGQILTNAQGN 311
                N L E   IQP  IL +    
Sbjct: 366 ----KNWLKEG--IQPTVILVDPPRK 385


>gi|229514897|ref|ZP_04404357.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio cholerae
           TMA 21]
 gi|229347602|gb|EEO12561.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio cholerae
           TMA 21]
          Length = 708

 Score = 37.3 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 20/103 (19%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + + ++ + +  L    ++  DLIF DPP         +     +        D  +   
Sbjct: 595 QHQYVQADCLQWLANAQSQY-DLIFIDPP--------TFSNSKRMEQTFDVQRDHVT--- 642

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                    +   +R+L+P GT+    +  +       L  L 
Sbjct: 643 --------LMTNLKRLLRPEGTIVFSNNKRHFKMDMEALHALG 677


>gi|218246859|ref|YP_002372230.1| type 12 methyltransferase [Cyanothece sp. PCC 8801]
 gi|218167337|gb|ACK66074.1| Methyltransferase type 12 [Cyanothece sp. PCC 8801]
          Length = 441

 Score = 37.3 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 12/75 (16%)

Query: 204 HPTQKPEALLSRIL----------VSSTKPGDIILDPFFGSG-TSGAVAKKL-RRSFIGI 251
           +P  KP +L    L          V S+    +ILD   GSG T+ ++A+       IGI
Sbjct: 29  NPKTKPISLYHESLATAFYRRNKTVISSTQDKLILDVACGSGYTTLSLAEANPGAKIIGI 88

Query: 252 EMKQDYIDIATKRIA 266
           ++ Q  +++A  R+ 
Sbjct: 89  DISQASLEMAEARLK 103


>gi|118782901|ref|XP_312571.3| AGAP002384-PA [Anopheles gambiae str. PEST]
 gi|33329807|gb|AAQ10289.1| putative RNA methylase [Anopheles gambiae]
 gi|116129787|gb|EAA08113.3| AGAP002384-PA [Anopheles gambiae str. PEST]
          Length = 459

 Score = 37.3 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           ++ DPF GSG+    A K      G ++ 
Sbjct: 220 LVFDPFAGSGSLLVAAAKFGAYVAGADID 248


>gi|21226117|ref|NP_632039.1| methyltransferase [Methanosarcina mazei Go1]
 gi|20904339|gb|AAM29711.1| methyltransferase [Methanosarcina mazei Go1]
          Length = 200

 Score = 37.3 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 14/116 (12%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI----D 259
           HP    EAL    + +        LD   G G +  +        IGI++ ++ I     
Sbjct: 22  HPQPAFEAL----IKNGEIKPGRALDIGCGRGENAIILAMNGCDVIGIDLAENAISDAKA 77

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
            AT+R   V+    +    L   R      F+++++ GL     ++ + Q  + A 
Sbjct: 78  KATERHVKVK---FVVEDALQMNRLFEEGEFDVVIDSGLFH---VMMDEQRRVFAQ 127


>gi|32035090|ref|ZP_00135149.1| COG0863: DNA modification methylase [Actinobacillus
          pleuropneumoniae serovar 1 str. 4074]
          Length = 100

 Score = 37.3 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 4/30 (13%)

Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNL 51
          KII G++    E +    VD+IF DPP+ +
Sbjct: 3  KIIYGDA----ESIHLDKVDMIFTDPPFEM 28


>gi|120553967|ref|YP_958318.1| 23S rRNA m(2)G2445 methyltransferase [Marinobacter aquaeolei VT8]
 gi|229560191|sp|A1TZG2|RLML_MARAV RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|120323816|gb|ABM18131.1| 23S rRNA m(2)G-2445 methyltransferase [Marinobacter aquaeolei VT8]
          Length = 725

 Score = 37.3 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 14  NSIFEWKDKIIKGNSISVL--EKLPAKSVDLIFADPP 48
           NS    K  + + + ++ L   K   +S DLIF DPP
Sbjct: 604 NSADPRKHVVEQADCLAWLADRKTANQSFDLIFMDPP 640


>gi|324510309|gb|ADY44309.1| Methyltransferase [Ascaris suum]
          Length = 278

 Score = 37.3 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 23/43 (53%)

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
            +   ++LD   GSG SG V  +    +IGI++ +  + +A +
Sbjct: 47  DEQPSLLLDIGCGSGLSGEVLSEAGHHWIGIDISEAMLKVAQQ 89


>gi|329943219|ref|ZP_08291993.1| tRNA (Uracil-5-)-methyltransferase family protein [Chlamydophila
           psittaci Cal10]
 gi|332287799|ref|YP_004422700.1| putative tRNA(Uracil-5-)-methyltransferase protein [Chlamydophila
           psittaci 6BC]
 gi|313848371|emb|CBY17375.1| putative RNA methyltransferase [Chlamydophila psittaci RD1]
 gi|325507335|gb|ADZ18973.1| putative tRNA(Uracil-5-)-methyltransferase protein [Chlamydophila
           psittaci 6BC]
 gi|328814766|gb|EGF84756.1| tRNA (Uracil-5-)-methyltransferase family protein [Chlamydophila
           psittaci Cal10]
 gi|328915057|gb|AEB55890.1| RNA methyltransferase, TrmA family [Chlamydophila psittaci 6BC]
          Length = 401

 Score = 37.3 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 5/79 (6%)

Query: 214 SRILVSSTKPGD-----IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           ++I+  + +  D      +LD + G+GT G +  K  +  IG+E+  D +D A + I   
Sbjct: 237 AKIIEIAKEFMDPQGSETLLDLYCGAGTIGIMLSKYVKKVIGVEIVPDAVDSAKENILIN 296

Query: 269 QPLGNIELTVLTGKRTEPR 287
           +    IE+ +   K    R
Sbjct: 297 KKESLIEVHLEDVKTFCKR 315


>gi|258648051|ref|ZP_05735520.1| putative methyltransferase [Prevotella tannerae ATCC 51259]
 gi|260851906|gb|EEX71775.1| putative methyltransferase [Prevotella tannerae ATCC 51259]
          Length = 185

 Score = 37.3 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNL 51
             G+++  + +   +  DLIFADPPY L
Sbjct: 97  YCGDALRFVARCREQ-FDLIFADPPYAL 123


>gi|241668652|ref|ZP_04756230.1| ribosomal protein L11 methyltransferase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254877185|ref|ZP_05249895.1| 50S ribosomal protein L11 methyltransferase [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254843206|gb|EET21620.1| 50S ribosomal protein L11 methyltransferase [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
          Length = 281

 Score = 37.3 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 61/190 (32%), Gaps = 26/190 (13%)

Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
           Y N   I +++ N+     N I    +                 +I       A  Y ++
Sbjct: 47  YENHHNIDSIIANIQKKFENIIESEINY---------------EIIKDQQWEAAWLYDYD 91

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSSTKPGD 225
             ++    +++ +  +W  P           D          E   +    L        
Sbjct: 92  PISI---GKNIVVYPNWRQPPQDNEHTYIIVDPSIAFGCGNHETTKMCLEWLEKYVSKDS 148

Query: 226 IILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
           ++LD   G+G     A KL   +  GI++  + I+ +   I + Q       T  +    
Sbjct: 149 LVLDYGCGTGVLAIGAVKLGAKYAEGIDIDPNSIESS---IKNAQENSVANKTHFSDN-- 203

Query: 285 EPRVAFNLLV 294
            P+  F+L+V
Sbjct: 204 PPKQQFDLVV 213


>gi|190573790|ref|YP_001971635.1| hypothetical protein Smlt1810 [Stenotrophomonas maltophilia K279a]
 gi|190011712|emb|CAQ45331.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a]
          Length = 192

 Score = 37.3 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 20/33 (60%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN 54
            +++ +++  L+  PA+  DL+F DPP+   L 
Sbjct: 104 TVVQADALRWLQGAPAQQADLVFVDPPFADGLW 136


>gi|159040690|ref|YP_001539942.1| methyltransferase type 11 [Caldivirga maquilingensis IC-167]
 gi|157919525|gb|ABW00952.1| Methyltransferase type 11 [Caldivirga maquilingensis IC-167]
          Length = 262

 Score = 37.3 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 20/38 (52%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           ILD   G G       KL    IGI++ QD+I+ A KR
Sbjct: 49  ILDVGSGVGRVAIPLAKLGFKVIGIDISQDFINEAIKR 86


>gi|159044646|ref|YP_001533440.1| hypothetical protein Dshi_2102 [Dinoroseobacter shibae DFL 12]
 gi|157912406|gb|ABV93839.1| hypothetical protein Dshi_2102 [Dinoroseobacter shibae DFL 12]
          Length = 485

 Score = 37.3 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 6/46 (13%)

Query: 207 QKPEALLS-----RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
             P++L +     R +V       IILD F GSGTS     +L R 
Sbjct: 242 PFPKSLYAVEDALRPIVRG-NKSAIILDFFSGSGTSLHATMRLNRQ 286


>gi|115371882|ref|ZP_01459195.1| UbiE/COQ5 methyltransferase [Stigmatella aurantiaca DW4/3-1]
 gi|310824172|ref|YP_003956530.1| type 11 methyltransferase [Stigmatella aurantiaca DW4/3-1]
 gi|115371117|gb|EAU70039.1| UbiE/COQ5 methyltransferase [Stigmatella aurantiaca DW4/3-1]
 gi|309397244|gb|ADO74703.1| Methyltransferase type 11 [Stigmatella aurantiaca DW4/3-1]
          Length = 235

 Score = 37.3 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 209 PEALLSRILVSST-KPGDIILDPFFGSG--TSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           P  L+   L +     G  ILD   GSG  + GA A+   R ++G+++    + +A KR
Sbjct: 59  PRTLVEFHLRAMELARGGTILDVPCGSGIFSIGAAAQAGVRHYLGVDISLPMLQVARKR 117


>gi|145595862|ref|YP_001160159.1| methyltransferase type 12 [Salinispora tropica CNB-440]
 gi|145305199|gb|ABP55781.1| Methyltransferase type 12 [Salinispora tropica CNB-440]
          Length = 201

 Score = 37.3 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 6/116 (5%)

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
           +R++ +   PG  +LD   G+G  GA       + +G++     ++ A       + L  
Sbjct: 37  ARLIDALVAPGSRVLDAGCGTGRVGAALALRGHTVVGVDADPVLVEAAGAAHLGPRWLVA 96

Query: 274 IELTVLTGKRTEPRVAFNLLVERG----LIQPGQILTNAQGNISATVCADGTLISG 325
               +      EP   F+  V  G     +  G         I+A +  DG +  G
Sbjct: 97  DLAELDLAAAGEPE-PFDAAVVAGNVMTFVAAGTE-AEVLRRIAAHLRPDGVIAVG 150


>gi|330013819|ref|ZP_08307804.1| putative ribosomal RNA large subunit methyltransferase L
           [Klebsiella sp. MS 92-3]
 gi|328533343|gb|EGF60089.1| putative ribosomal RNA large subunit methyltransferase L
           [Klebsiella sp. MS 92-3]
          Length = 432

 Score = 37.3 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 20/104 (19%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++++ + +  L +   +  DLIF DPP         +     + DA     D       
Sbjct: 321 HRLMQADVLGWLRE-STEQFDLIFIDPP--------TFSNSKRMEDAFDVQRDHIR---- 367

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
                   +   +R+L+  GT+    +          L  L   
Sbjct: 368 -------LMTDLKRLLRKGGTIMFSNNKRGFRMDHDGLAALGLK 404


>gi|324514530|gb|ADY45896.1| tRNA guanosine-2'-O-methyltransferase TRM11 [Ascaris suum]
          Length = 445

 Score = 37.3 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 44/132 (33%), Gaps = 14/132 (10%)

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK-----RIASVQPLGNIEL 276
             G I+LDPF G+G     A     + IG E+      IA       R+   + L + E 
Sbjct: 208 NMGSIVLDPFCGTGGLLISAAHFGAAVIGTEIN---YQIARAVGRSSRVGK-KFLTDNES 263

Query: 277 TVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGA 336
                K+ E    F  L+   +    +      GN  +    D  +        +   G 
Sbjct: 264 VAANFKQYEIDDRFMSLI---IADASRHTMWRCGNNKSDGIFDAIVADPPY--GVREKGR 318

Query: 337 KVSGSETCNGWN 348
           KV   E   GW 
Sbjct: 319 KVGNKERKTGWT 330


>gi|325123179|gb|ADY82702.1| ribosomal protein L11 methyltransferase [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 222

 Score = 37.3 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 184 WLIPICSGSERL--------RNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGS 234
           WLIP    ++RL         N     +       A+   +L       D ++LD   GS
Sbjct: 40  WLIPPVFPTDRLDDEVIRRIWNDTPYWIFCWASGLAMAQWLLAEPHHVKDKVVLDFGAGS 99

Query: 235 GTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           G     AK    +  I  ++ Q  ++   +
Sbjct: 100 GVVAIAAKMAGAKRVICCDIDQVSLNACRE 129


>gi|317491493|ref|ZP_07949929.1| THUMP domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316921040|gb|EFV42363.1| THUMP domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 708

 Score = 37.3 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 36/113 (31%), Gaps = 20/113 (17%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N   N +   + ++++ + +S L     +  D+IF DPP          +   +  D   
Sbjct: 582 NLRANGLTGRQHRLVQADCLSYLHN-SDEQYDVIFIDPP-----TFSNSKRMEATFDVQR 635

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
           D  D                   +R+L+  GT+    +          L  L 
Sbjct: 636 DHIDIMRDL--------------KRMLRRRGTIMFSNNKRGFKMDLEALGALG 674


>gi|298676094|ref|YP_003727844.1| hypothetical protein Metev_2223 [Methanohalobium evestigatum
           Z-7303]
 gi|298289082|gb|ADI75048.1| protein of unknown function Met10 [Methanohalobium evestigatum
           Z-7303]
          Length = 266

 Score = 37.3 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 16/43 (37%)

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           L++   P + IL PF G G     A       + IE   +   
Sbjct: 114 LIAKINPYEKILIPFCGVGPFAIPAAFYGFKAVAIEKNPEAFK 156


>gi|124485044|ref|YP_001029660.1| methyltransferase [Methanocorpusculum labreanum Z]
 gi|124362585|gb|ABN06393.1| methyltransferase [Methanocorpusculum labreanum Z]
          Length = 200

 Score = 37.3 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 5/84 (5%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           P      LL    ++    G  ++D   G+G     A  L  S  G+++ +  + IA K 
Sbjct: 29  PAPLAARLLHEAALAGDIEGMTVVDLGCGTGMLSIGAALLGASVTGVDIDEAALKIARK- 87

Query: 265 IASVQPLG-NIELTVLT-GKRTEP 286
             + +  G +IE   +   +  EP
Sbjct: 88  --NAEKFGVDIEWLRMRIDETAEP 109


>gi|15893813|ref|NP_347162.1| SAM-dependent methyltransferase [Clostridium acetobutylicum ATCC
           824]
 gi|50401652|sp|Q97LN4|Y523_CLOAB RecName: Full=Uncharacterized RNA methyltransferase CA_C0523
 gi|15023386|gb|AAK78502.1|AE007567_4 SAM-dependent methyltransferase related to
           tRNA(uracyl-5-)-methyltransferase (trmA family)
           [Clostridium acetobutylicum ATCC 824]
          Length = 460

 Score = 37.3 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 7/88 (7%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            +++ D + G+GT      +  +   G+E+  + I+ A   I + Q    IE T     +
Sbjct: 312 KEVVFDAYCGTGTISLFLSQNAKKVYGVEIIPEAIENAK--INAKQ--NGIENTEFIVGK 367

Query: 284 TEPRVAFNLLVERGLIQPGQILTNAQGN 311
           +E  +    L+E+G I P  ++ +    
Sbjct: 368 SEEEIPK--LIEKG-IAPEVVVVDPPRK 392


>gi|160892739|ref|ZP_02073529.1| hypothetical protein CLOL250_00270 [Clostridium sp. L2-50]
 gi|156865780|gb|EDO59211.1| hypothetical protein CLOL250_00270 [Clostridium sp. L2-50]
          Length = 185

 Score = 37.3 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 7/84 (8%)

Query: 20  KDKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           K ++I G+ ++ ++ L  +S    D+IF DPPY   L  Q+     S      ++W    
Sbjct: 92  KARVITGDCVAAIDSLE-RSGLVFDIIFMDPPYGKLLEKQVLNRLASSGIVDKNTWIIVE 150

Query: 77  S--FEAYDAFTRAWLLACRRVLKP 98
           S     YD  T        RV K 
Sbjct: 151 SDLNTEYDYLTDIGF-EIDRVKKY 173


>gi|325928910|ref|ZP_08190072.1| putative methyltransferase [Xanthomonas perforans 91-118]
 gi|325540706|gb|EGD12286.1| putative methyltransferase [Xanthomonas perforans 91-118]
          Length = 320

 Score = 37.3 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPP 48
           ++   +S   +  L   SVD I  DPP
Sbjct: 221 QLTHADSAQHIATLADDSVDAILHDPP 247


>gi|284042773|ref|YP_003393113.1| Cyclopropane-fatty-acyl-phospholipid synthase [Conexibacter woesei
           DSM 14684]
 gi|283946994|gb|ADB49738.1| Cyclopropane-fatty-acyl-phospholipid synthase [Conexibacter woesei
           DSM 14684]
          Length = 423

 Score = 37.3 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 45/114 (39%), Gaps = 4/114 (3%)

Query: 222 KPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
           + G+ +LD   G G+     A++     +GI +      +A +R+A+   L +     L 
Sbjct: 187 REGERVLDVGCGWGSFALHAAERYGVEVVGITLSPSQAALARERVAAA-GLSDRVEIRLQ 245

Query: 281 GKRTEPRVAFNLLVERGLI-QPGQILTNAQGNI-SATVCADGTLISGTELGSIH 332
             R      F+ +   G++   G+   +    + +A +   G L++       H
Sbjct: 246 DYRELGGEQFDAISSIGMVEHVGETQIDEYARVLAAALKPGGRLLNHGITRQRH 299


>gi|228471276|ref|ZP_04056082.1| conserved hypothetical protein [Porphyromonas uenonis 60-3]
 gi|228306918|gb|EEK16016.1| conserved hypothetical protein [Porphyromonas uenonis 60-3]
          Length = 406

 Score = 37.3 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 22/45 (48%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
           + S+AIN + +     + + +  ++   L  +   + DLI  DPP
Sbjct: 268 EESVAINFSSDPETLQRHEAVVADAFDYLSAIEPGAYDLIVLDPP 312


>gi|117929034|ref|YP_873585.1| O-methyltransferase family protein [Acidothermus cellulolyticus
           11B]
 gi|117649497|gb|ABK53599.1| O-methyltransferase, family 3 [Acidothermus cellulolyticus 11B]
          Length = 242

 Score = 37.3 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFAD 46
           ++I G ++ VL +L     DL+F D
Sbjct: 139 RLICGEALDVLPRLSDAGYDLVFCD 163


>gi|84500921|ref|ZP_00999156.1| hypothetical protein OB2597_02262 [Oceanicola batsensis HTCC2597]
 gi|84390988|gb|EAQ03406.1| hypothetical protein OB2597_02262 [Oceanicola batsensis HTCC2597]
          Length = 400

 Score = 37.3 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 2/26 (7%)

Query: 25  KGNSISVLEKLPAKS--VDLIFADPP 48
           +G++  V+  L  +    DL+  DPP
Sbjct: 278 RGDAFEVMAALAEEGEDFDLVICDPP 303


>gi|330684846|gb|EGG96536.1| O-methyltransferase [Staphylococcus epidermidis VCU121]
          Length = 210

 Score = 37.3 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 31/48 (64%), Gaps = 4/48 (8%)

Query: 3   QKNSLAINENQNSI----FEWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
           ++NS  I++ +++I    +  + ++I+G+++   +K+  ++ D++F D
Sbjct: 81  ERNSEMIHQAKSNISNNHYSHRIRLIEGDALEQFDKIKDQTFDMLFID 128


>gi|158312854|ref|YP_001505362.1| DNA methyltransferase [Frankia sp. EAN1pec]
 gi|158108259|gb|ABW10456.1| DNA methyltransferase [Frankia sp. EAN1pec]
          Length = 472

 Score = 37.3 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +I DPF G+GT+   A +L       ++  
Sbjct: 110 VITDPFSGTGTTPLAAAELGHHGQSADLNP 139


>gi|54298663|ref|YP_125032.1| hypothetical protein lpp2727 [Legionella pneumophila str. Paris]
 gi|53752448|emb|CAH13880.1| hypothetical protein lpp2727 [Legionella pneumophila str. Paris]
          Length = 181

 Score = 37.3 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 11  ENQNSIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
           +N    F+  +  +IK ++++ L++   +  DLIF DPPY L  
Sbjct: 85  QNTIRQFDTPNLHLIKTDTLNYLKQ-STEQFDLIFLDPPYALNY 127


>gi|237745800|ref|ZP_04576280.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
 gi|229377151|gb|EEO27242.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
          Length = 207

 Score = 37.3 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 52/158 (32%), Gaps = 18/158 (11%)

Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT-SGAVAKKLRRSFI 249
           G + +   + +    T  PE +   + V+     D++ D   G G    A A+K     +
Sbjct: 33  GLDEMMGPELDAGFITTWPETVDGMLKVAEVTKDDLVYDLGCGDGRIVIAAAQKYGAKGV 92

Query: 250 GIEMKQDYIDIATKRI---ASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILT 306
           GI++         KRI    +      +E  V        +V F+      L  P  I  
Sbjct: 93  GIDLNP-------KRIEEANANARAAKVENLVQFRLGNFYKVDFSDATVVALYLPQTINY 145

Query: 307 NAQGNISATVCADGTLISGTELGS-------IHRVGAK 337
             +  +   +     ++S             I +VG K
Sbjct: 146 ELRPILWKQLKVGSRVVSNESDMGPEWPAEKIEQVGTK 183


>gi|315231713|ref|YP_004072149.1| tRNA (Uracil54-C5-)-methyltransferase [Thermococcus barophilus MP]
 gi|315184741|gb|ADT84926.1| tRNA (Uracil54-C5-)-methyltransferase [Thermococcus barophilus MP]
          Length = 417

 Score = 37.3 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 42/111 (37%), Gaps = 9/111 (8%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
           I+ S +      ++         E ++ R D ++ +   +   +    + ++  +K    
Sbjct: 215 IYWSVNSSKSDVSYGEPRKFWNREFIKERLDDVVYLIHPNSFFQTNSYQAVNLVKK---- 270

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
                V+    G  +LD + G GT G    K      GIE+    +++A K
Sbjct: 271 -----VAEFAEGKKVLDLYSGVGTFGIYLAKKGFEVEGIEINPFAVEMARK 316


>gi|189238660|ref|XP_972432.2| PREDICTED: similar to CG10903 CG10903-PA [Tribolium castaneum]
 gi|270008360|gb|EFA04808.1| hypothetical protein TcasGA2_TC014857 [Tribolium castaneum]
          Length = 274

 Score = 37.3 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 27/49 (55%)

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           +L+        +LD   GSG SG+V +     ++G+++ +  +D+A +R
Sbjct: 42  LLLLPEDQPCYLLDIGCGSGLSGSVLEDQGHFWVGMDISKAMLDVALER 90


>gi|330968135|gb|EGH68395.1| 23S rRNA m(2)G2445 methyltransferase [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 750

 Score = 37.3 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 48/133 (36%), Gaps = 24/133 (18%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           F  K+++ +G+ ++ L+    +  DLIF DPP         +     +        D+  
Sbjct: 636 FSDKNRLEQGDVMAWLQANRDEY-DLIFIDPP--------TFSNSKRMEGIFVVQRDQVE 686

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             +          LA  R L P G L+    + N FR   + +NL      + +  ++  
Sbjct: 687 LID----------LAMAR-LAPGGVLY----FSNNFRKFVLDENLGQRYAVEDITAQTID 731

Query: 137 MPNFRGRRFQNAH 149
               R  +   A 
Sbjct: 732 PDFARNGKIHRAW 744


>gi|296108319|ref|YP_003620020.1| putative methylase [Legionella pneumophila 2300/99 Alcoy]
 gi|295650221|gb|ADG26068.1| putative methylase [Legionella pneumophila 2300/99 Alcoy]
          Length = 181

 Score = 37.3 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 11  ENQNSIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
           +N    F+  +  +IK ++++ L++   +  DLIF DPPY L  
Sbjct: 85  QNTIRQFDTPNLHLIKTDTLNYLKQ-STEQFDLIFLDPPYALNY 127


>gi|323524666|ref|YP_004226819.1| methyltransferase [Burkholderia sp. CCGE1001]
 gi|323381668|gb|ADX53759.1| methyltransferase [Burkholderia sp. CCGE1001]
          Length = 204

 Score = 37.3 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 1   MSQKNSLA---INENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN 50
           M ++N+ A   +  NQ  +     +I + + + +   LP  S D++F DPP+ 
Sbjct: 90  MVERNARAAAQLRANQERLAARMIEIAEADGLRLAASLPPGSFDVVFLDPPFG 142


>gi|78358175|ref|YP_389624.1| ArsR family transcriptional regulator [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78220580|gb|ABB39929.1| transcriptional regulator, ArsR family [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 348

 Score = 37.3 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 41/115 (35%), Gaps = 11/115 (9%)

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS-----VQPL 271
           +VS      + +D   G+GT      +  +  IG++     +++A +R           +
Sbjct: 181 IVSHMPRCRVAVDFGCGTGTMLKAMMQKAQEVIGVDGSPRMLELARRRFEEDAGRVSLRI 240

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGT 326
           G++E   L     +  V    +V   L  PG  L      I   +   G L+   
Sbjct: 241 GDLEHLPLADGEADFAVV--SMVLHHLSHPGAAL----REIRRVLSPGGVLVLAD 289


>gi|45655712|ref|YP_003521.1| precorrin-6y methylase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|45602683|gb|AAS72158.1| precorrin-6y methylase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 411

 Score = 37.3 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 4/87 (4%)

Query: 183 DWLIP--ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           +W  P  + + SE   +K   K     K E  +  I   + +   +I D   GSG+    
Sbjct: 211 NWKPPTVVPNVSEENYSKRVPKKGLITKKEVRILSIAFLNIREDSVIWDIGAGSGSIAIE 270

Query: 241 AKKL--RRSFIGIEMKQDYIDIATKRI 265
           A ++        IE+  + I+I  + I
Sbjct: 271 AAQIAKNGKSYAIEIDPEGIEICKQNI 297


>gi|24217221|ref|NP_714704.1| precorrin-6Y methylase [Leptospira interrogans serovar Lai str.
           56601]
 gi|24202273|gb|AAN51719.1| precorrin-6Y C5,15 methylase [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 411

 Score = 37.3 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 4/87 (4%)

Query: 183 DWLIP--ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
           +W  P  + + SE   +K   K     K E  +  I   + +   +I D   GSG+    
Sbjct: 211 NWKPPTVVPNVSEENYSKRVPKKGLITKKEVRILSIAFLNIREDSVIWDIGAGSGSIAIE 270

Query: 241 AKKL--RRSFIGIEMKQDYIDIATKRI 265
           A ++        IE+  + I+I  + I
Sbjct: 271 AAQIAKNGKSYAIEIDPEGIEICKQNI 297


>gi|325507937|gb|ADZ19573.1| SAM-dependent methyltransferase [Clostridium acetobutylicum EA
           2018]
          Length = 460

 Score = 37.3 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 7/88 (7%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            +++ D + G+GT      +  +   G+E+  + I+ A   I + Q    IE T     +
Sbjct: 312 KEVVFDAYCGTGTISLFLSQNAKKVYGVEIIPEAIENAK--INAKQ--NGIENTEFIVGK 367

Query: 284 TEPRVAFNLLVERGLIQPGQILTNAQGN 311
           +E  +    L+E+G I P  ++ +    
Sbjct: 368 SEEEIPK--LIEKG-IAPEVVVVDPPRK 392


>gi|310659144|ref|YP_003936865.1| methyltransferase [Clostridium sticklandii DSM 519]
 gi|308825922|emb|CBH21960.1| putative methyltransferase [Clostridium sticklandii]
          Length = 188

 Score = 37.3 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 7/55 (12%)

Query: 3   QKNSLAINENQNSIFEWKD-----KIIKGNSISVLEKLPAKSVDL--IFADPPYN 50
            ++S +I   Q +I   K      KI+K ++   L  L  K + L  IF DPPY 
Sbjct: 71  DRDSSSIELTQKNIESCKFDSTKYKILKADAFEALNSLANKGIKLDYIFMDPPYG 125


>gi|262282939|ref|ZP_06060706.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           2_1_36FAA]
 gi|262261191|gb|EEY79890.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           2_1_36FAA]
          Length = 480

 Score = 37.3 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 54/146 (36%), Gaps = 8/146 (5%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGD 225
           N +A+           D++     G++            TQ  E L    +  +  K  D
Sbjct: 271 NTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTQMAEKLYQTAIDFAGLKVDD 330

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           +++D + G GT G    K  +   G+E+  + ++ + K  A++  + N      T +   
Sbjct: 331 VVVDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSKKN-AAINGITNSHYVCDTAENAM 389

Query: 286 PRVAFNLLVERGLIQPGQILTNAQGN 311
                N L E   IQP  IL +    
Sbjct: 390 ----KNWLKEG--IQPSLILVDPPRK 409


>gi|253997116|ref|YP_003049180.1| methyltransferase [Methylotenera mobilis JLW8]
 gi|253983795|gb|ACT48653.1| methyltransferase [Methylotenera mobilis JLW8]
          Length = 190

 Score = 37.3 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY 49
           A+ +N++++     +++  ++++ L+K   +S D+IF DPPY
Sbjct: 87  ALLDNKSTLKADAAQVLNLDALAFLDK-NQESFDVIFVDPPY 127


>gi|154151708|ref|YP_001405326.1| methyltransferase small [Candidatus Methanoregula boonei 6A8]
 gi|154000260|gb|ABS56683.1| methyltransferase small [Methanoregula boonei 6A8]
          Length = 202

 Score = 37.3 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 1/76 (1%)

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RS 247
           C+G ER R    +   P      LL    VS       ++D   G+G     A  L  R 
Sbjct: 13  CAGFERPRASREQYQTPATLAARLLYDAFVSGDIAEKTVMDLGCGTGILAIGAALLGARE 72

Query: 248 FIGIEMKQDYIDIATK 263
             G ++  + +  A K
Sbjct: 73  VRGTDIDPEALRTAEK 88


>gi|124004730|ref|ZP_01689574.1| membrane-associated protein, putative [Microscilla marina ATCC
           23134]
 gi|123989853|gb|EAY29382.1| membrane-associated protein, putative [Microscilla marina ATCC
           23134]
          Length = 205

 Score = 37.3 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 2/91 (2%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           L+ +IL     P   +LD   GSG +     K      GI+   + I+    +++ V P 
Sbjct: 17  LIDQILKGRLMPRMRVLDAGCGSGRNDEYLLKTGFEVFGIDQSPEAIEYLHNKLSQVTPD 76

Query: 272 GNIELTVLTG--KRTEPRVAFNLLVERGLIQ 300
            +++   +    +   P   F+ ++   ++ 
Sbjct: 77  VSLKQFEVGDVAQMPYPNAHFDWVISSAVLH 107


>gi|156742547|ref|YP_001432676.1| putative RNA methylase [Roseiflexus castenholzii DSM 13941]
 gi|156233875|gb|ABU58658.1| putative RNA methylase [Roseiflexus castenholzii DSM 13941]
          Length = 362

 Score = 37.3 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 5/91 (5%)

Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD--IILDPFFGSGTSGAVAKKLRRS--F 248
           ER+R++D +  H         +  L   T P D    LDP  G+GT       L R    
Sbjct: 179 ERMRHRDYKVEHLPASLRPAAAAALAWLTTPRDDDRFLDPMCGAGTILIERAHLGRYRAL 238

Query: 249 IGIEMKQDYIDIATKRIAS-VQPLGNIELTV 278
           IG ++  + +  A   I S  +P+   E   
Sbjct: 239 IGGDIDPEAVATARANIGSRYKPVSIHEWDA 269


>gi|315605141|ref|ZP_07880190.1| ubiquinone/menaquinone biosynthesis methyltransferase [Actinomyces
           sp. oral taxon 180 str. F0310]
 gi|315313138|gb|EFU61206.1| ubiquinone/menaquinone biosynthesis methyltransferase [Actinomyces
           sp. oral taxon 180 str. F0310]
          Length = 235

 Score = 37.3 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 24/48 (50%)

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
            PG+ ILD   G+GTS A   K     +  ++ +  I++  +R   ++
Sbjct: 53  HPGERILDLAAGTGTSSAALAKGGAEVVACDLSEGMIEVGRERHPDIE 100


>gi|303244617|ref|ZP_07330950.1| putative RNA methylase [Methanothermococcus okinawensis IH1]
 gi|302485043|gb|EFL47974.1| putative RNA methylase [Methanothermococcus okinawensis IH1]
          Length = 395

 Score = 37.3 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 5   NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNL--QLNGQLYRPDH 62
            S  + +N  SI +W  K IK      L  L  K VD I  DPPY +     G +    +
Sbjct: 291 KSYNLMDNIISIKKWDAKYIK----DYLNTLKIKEVDGIITDPPYGISTSKKGDIESILN 346

Query: 63  SLVDAVTDS 71
           SL + + D+
Sbjct: 347 SLGNVLKDN 355


>gi|229578382|ref|YP_002836780.1| protein of unknown function DUF1156 [Sulfolobus islandicus
           Y.G.57.14]
 gi|228009096|gb|ACP44858.1| protein of unknown function DUF1156 [Sulfolobus islandicus
           Y.G.57.14]
          Length = 931

 Score = 37.3 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 38/126 (30%), Gaps = 28/126 (22%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN-------------------------LQ 52
           + + +II  +   +   L  K VD+I  DPPY                           Q
Sbjct: 504 DSQIEIINSDVNEL--TLSDK-VDVIVTDPPYADDVPYPEVSDFYYVWLKRIIPFPYKTQ 560

Query: 53  LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
               + R      +      D   S+E +             +LK +G L    ++ +  
Sbjct: 561 WEEFVPRDIGVDEERSKVFGDDIGSYEYFRNKLAQTFNKLAEILKDDGLLITFYNHTSPD 620

Query: 113 RIGTML 118
              ++L
Sbjct: 621 AWVSLL 626


>gi|76801591|ref|YP_326599.1| hypothetical protein NP1886A [Natronomonas pharaonis DSM 2160]
 gi|76557456|emb|CAI49034.1| conserved hypothetical protein [Natronomonas pharaonis DSM 2160]
          Length = 345

 Score = 37.3 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 9/78 (11%)

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK---------RIAS 267
           +VS  +  + + D F G G     A K     +G+++    I+   +         RI +
Sbjct: 176 IVSDVEADESVFDMFAGVGPFVIPAAKRGADCVGVDLNAAAIEYLRRNAERNSVADRITA 235

Query: 268 VQPLGNIELTVLTGKRTE 285
           +       ++    +R+E
Sbjct: 236 IHGDVREVVSEPPDERSE 253


>gi|328954670|ref|YP_004372003.1| RNA methyltransferase, TrmA family [Coriobacterium glomerans PW2]
 gi|328454994|gb|AEB06188.1| RNA methyltransferase, TrmA family [Coriobacterium glomerans PW2]
          Length = 411

 Score = 37.3 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 6/45 (13%)

Query: 225 DIILDPFFGSGTSGAVAKKLRR------SFIGIEMKQDYIDIATK 263
           D++LD + GSGT G       R        IG+E     +  A +
Sbjct: 257 DVVLDAYCGSGTIGLSCAAHMRASGRPIRVIGVERNPAGVRDARR 301


>gi|307256080|ref|ZP_07537868.1| Ribosomal RNA large subunit methyltransferase L [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306865502|gb|EFM97397.1| Ribosomal RNA large subunit methyltransferase L [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 712

 Score = 37.3 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 20/91 (21%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +++ + + +  L +   +  +LIF DPP              S    + DSWD       
Sbjct: 599 NRLFQADCLQWLAECR-ERFELIFVDPP------------TFSNSKRMEDSWDVQRDHI- 644

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
                   +   +R+L  +G +    +    
Sbjct: 645 ------KLMTQLKRILTADGIIVFSNNKRGF 669


>gi|262377765|ref|ZP_06070983.1| type IIs modification methyltransferase M.AlwI [Acinetobacter
           lwoffii SH145]
 gi|262307349|gb|EEY88494.1| type IIs modification methyltransferase M.AlwI [Acinetobacter
           lwoffii SH145]
          Length = 640

 Score = 37.3 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 25/128 (19%)

Query: 22  KIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           +II G+   VL+K   P    DLIF DPPY              +  +    + +++  +
Sbjct: 173 QIICGDYSEVLDKFSCPN---DLIFLDPPY--------------VPISEYSDFKRYTKEQ 215

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
            Y       L    + L   G    + + ++      ++QNL      +++  K +   +
Sbjct: 216 FYLEDHEK-LAEIYKKLSNQGCHVFLTNSNHP-----VVQNLYSDFTYEVIQTKRHISCD 269

Query: 140 FRGRRFQN 147
            + R+ ++
Sbjct: 270 SKSRKGED 277


>gi|229824364|ref|ZP_04450433.1| hypothetical protein GCWU000282_01685 [Catonella morbi ATCC 51271]
 gi|229786164|gb|EEP22278.1| hypothetical protein GCWU000282_01685 [Catonella morbi ATCC 51271]
          Length = 499

 Score = 37.3 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 6/82 (7%)

Query: 206 TQKPEALLSRILVSSTKP-GDIILDPFFGSGTSGAV-AKKLRRSFIGIEMKQDYIDIATK 263
           T + EAL    L ++     + +LD + G GT     A++       +E+  + ID+A  
Sbjct: 333 TPQAEALYRYALEAADLSGSETVLDAYCGIGTISLALARQAG-QVYAMEIVPEAIDMAR- 390

Query: 264 RIASVQPLGNIELTVLTGKRTE 285
             A+ +  G   +T   GK  E
Sbjct: 391 --ANAEANGLSNVTFQAGKAEE 410


>gi|219852897|ref|YP_002467329.1| RNA methylase [Methanosphaerula palustris E1-9c]
 gi|219547156|gb|ACL17606.1| putative RNA methylase [Methanosphaerula palustris E1-9c]
          Length = 318

 Score = 37.3 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 2/90 (2%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRIL-VSSTKPG 224
           +++     + D     + L+ I   +  LRN  G    HP      +   ++ +S  +PG
Sbjct: 118 DHEFHLVFSGDRCFCGELLLRIDRRTMDLRNPYGRPFFHPGVMMPRMARTLVNLSLAEPG 177

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           +I+ DPF G+G +   A  +     G +  
Sbjct: 178 EILYDPFCGTGGTMLEADLIGIQAYGSDTD 207


>gi|213156291|ref|YP_002318711.1| tRNA (guanine-N(7)-)-methyltransferase [Acinetobacter baumannii
           AB0057]
 gi|239503515|ref|ZP_04662825.1| tRNA (guanine-N(7)-)-methyltransferase [Acinetobacter baumannii
           AB900]
 gi|301344744|ref|ZP_07225485.1| tRNA (guanine-N(7)-)-methyltransferase [Acinetobacter baumannii
           AB056]
 gi|301510759|ref|ZP_07235996.1| tRNA (guanine-N(7)-)-methyltransferase [Acinetobacter baumannii
           AB058]
 gi|301595168|ref|ZP_07240176.1| tRNA (guanine-N(7)-)-methyltransferase [Acinetobacter baumannii
           AB059]
 gi|332853535|ref|ZP_08434799.1| tRNA (guanine-N(7)-)-methyltransferase [Acinetobacter baumannii
           6013150]
 gi|332868400|ref|ZP_08438131.1| tRNA (guanine-N(7)-)-methyltransferase [Acinetobacter baumannii
           6013113]
 gi|193076903|gb|ABO11626.2| tRNA(guanine-7)methyltransferase [Acinetobacter baumannii ATCC
           17978]
 gi|213055451|gb|ACJ40353.1| tRNA (guanine-N(7)-)-methyltransferase [Acinetobacter baumannii
           AB0057]
 gi|332728568|gb|EGJ59940.1| tRNA (guanine-N(7)-)-methyltransferase [Acinetobacter baumannii
           6013150]
 gi|332733399|gb|EGJ64582.1| tRNA (guanine-N(7)-)-methyltransferase [Acinetobacter baumannii
           6013113]
          Length = 238

 Score = 37.3 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 23/125 (18%)

Query: 18  EWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           E K+ +++  ++I VL ++P  S++ +            QLY P         D W K  
Sbjct: 111 ELKNLRVLDADAIQVLREMPDNSINCV------------QLYFP---------DPWQKKR 149

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            F+         +    + L+  GT      +         + +    + N      S P
Sbjct: 150 HFKR-RFVIHERMQLVEQKLELGGTFHAATDWEPYAEWMLDVLDNRPNLENLAGKGNSYP 208

Query: 137 MPNFR 141
            P +R
Sbjct: 209 RPEWR 213


>gi|116075321|ref|ZP_01472581.1| possible methyltransferase [Synechococcus sp. RS9916]
 gi|116067518|gb|EAU73272.1| possible methyltransferase [Synechococcus sp. RS9916]
          Length = 215

 Score = 37.3 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 6/90 (6%)

Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
            R  W+    +    L     E+L        L    L S  +P   +LD   GSG + A
Sbjct: 10  YRYRWIYDTVTAVSSLSVGGVERL------RGLGVDALRSRLQPSAAVLDLCCGSGEAAA 63

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
                     G+++    +++A KR   +Q
Sbjct: 64  PWLDAGFQVTGLDVSPLALELAEKRHPGMQ 93


>gi|110833866|ref|YP_692725.1| 23S rRNA m(2)G2445 methyltransferase [Alcanivorax borkumensis SK2]
 gi|123149576|sp|Q0VQU5|RLML_ALCBS RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|110646977|emb|CAL16453.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
          Length = 704

 Score = 37.3 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 49/136 (36%), Gaps = 25/136 (18%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N     + ++ + +++  L++   +  DL+F DPP     +    R D  + +   D   
Sbjct: 586 NGFSTDQHELARADTMRWLDECKEQ-FDLVFCDPP---TFSNNKSRSDFVVEEHHGD--- 638

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                          +    R L+P G L+   +Y        M ++++ W   + + R 
Sbjct: 639 --------------LIRKIMRCLEPGGVLYFSCNYRRF----QMDESISKWYAVEDISRW 680

Query: 134 SNPMPNFRGRRFQNAH 149
           S P    R  +    +
Sbjct: 681 SIPEDFRRNEKIHYCY 696


>gi|299770920|ref|YP_003732946.1| tRNA (guanine-N(7)-)-methyltransferase [Acinetobacter sp. DR1]
 gi|298701008|gb|ADI91573.1| tRNA (guanine-N(7)-)-methyltransferase [Acinetobacter sp. DR1]
          Length = 238

 Score = 37.3 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 13  QNSIFEWKD-KIIKGNSISVLEKLPAKSVDLI 43
           +  I E K+ +++  ++I VL ++P  S++ +
Sbjct: 106 EAGIAEVKNLRVLDADAIQVLREMPDNSINCV 137


>gi|291545409|emb|CBL18517.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus sp.
           SR1/5]
          Length = 390

 Score = 37.3 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           ++D + G+GT G +A    R  IG+E+ +D I  A 
Sbjct: 240 VIDAYCGTGTIGIIASGNARDVIGVELNRDAIRDAR 275


>gi|262377236|ref|ZP_06070461.1| predicted protein [Acinetobacter lwoffii SH145]
 gi|262307974|gb|EEY89112.1| predicted protein [Acinetobacter lwoffii SH145]
          Length = 461

 Score = 37.3 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 2/54 (3%)

Query: 204 HPTQKPEALLSRILVSSTKPGDI--ILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
           +P +    L      +  K  +    LDPF GSGT+   A          ++  
Sbjct: 66  YPGKLYPNLAKFFCKALYKERNTNKFLDPFVGSGTTIVEAAAEGYEAFYCDINP 119


>gi|313230081|emb|CBY07785.1| unnamed protein product [Oikopleura dioica]
          Length = 470

 Score = 37.3 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 16/50 (32%)

Query: 33  EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
             +     D I  DPPY ++   +         D +      F    AY+
Sbjct: 304 RTIDDGWFDAIITDPPYGVREKCEKIGTSKKFDDWIDFDGTHFPDKVAYN 353


>gi|301312381|ref|ZP_07218297.1| O-methyltransferase family protein [Bacteroides sp. 20_3]
 gi|300829564|gb|EFK60218.1| O-methyltransferase family protein [Bacteroides sp. 20_3]
          Length = 211

 Score = 37.3 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 8/44 (18%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
           +     +     S+ + K K+  G+++ ++ +L  ++ D++F D
Sbjct: 91  EMEDFIMKYLSRSLHKDKIKVHLGDAMEIIPRL-DETFDMVFID 133


>gi|260592299|ref|ZP_05857757.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella veroralis
           F0319]
 gi|260535749|gb|EEX18366.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella veroralis
           F0319]
          Length = 474

 Score = 37.3 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 70/212 (33%), Gaps = 13/212 (6%)

Query: 60  PDHSLVDAVTDSWDKFSSFE---AYDAFTRAWLLACRRVLKPNG-TLWVIGSYHNIFRIG 115
              ++   +T S+DK    E     D          R      G T + I + H + R  
Sbjct: 159 SGGAIGFHITGSFDKIYPIEKCWLMDNLCNEIRNDIRDYALETGMTFYDIRAQHGLLR-D 217

Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
            ML+N N      +V    +   +    +    H  +    P   +  Y  N       N
Sbjct: 218 LMLRNSNTGEWMLLVQFHYDEEGDDERAKALMQH--IAEKFPQITSLFYVDNQKGNDTFN 275

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLH---PTQKPEALLS--RILVSSTKPGDIILDP 230
           +           I    E L+ K   K      T++   L S  R   + T   +++ D 
Sbjct: 276 DLELTLYKGNDHIFETMEDLKFKVSPKSFYQTNTEQAYHLYSVAREFANLTG-DELVYDL 334

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           + G+GT      K  R  IGIE   + I+ A 
Sbjct: 335 YTGTGTIANFIAKKARKVIGIEYVPEAIEDAK 366


>gi|269928597|ref|YP_003320918.1| RNA methyltransferase, TrmA family [Sphaerobacter thermophilus DSM
           20745]
 gi|269787954|gb|ACZ40096.1| RNA methyltransferase, TrmA family [Sphaerobacter thermophilus DSM
           20745]
          Length = 400

 Score = 37.3 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            ++++D + G GT   +     R  I IE     +  A   +  +    N+E      +R
Sbjct: 259 NEVVVDAYAGVGTFAILLASEARRVIAIEESPSAVADAQPNLEGI---SNVEYVTGKVER 315

Query: 284 TEPRVAFN 291
             PR+   
Sbjct: 316 VLPRLEIQ 323


>gi|262199962|ref|YP_003271171.1| hypothetical protein Hoch_6814 [Haliangium ochraceum DSM 14365]
 gi|262083309|gb|ACY19278.1| conserved hypothetical protein [Haliangium ochraceum DSM 14365]
          Length = 433

 Score = 37.3 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 19/37 (51%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           ++DPF G+GT    A+++    +G++       IA  
Sbjct: 84  VIDPFCGAGTVLVEARRVGALALGVDANPLAALIARA 120


>gi|255076877|ref|XP_002502103.1| predicted protein [Micromonas sp. RCC299]
 gi|226517368|gb|ACO63361.1| predicted protein [Micromonas sp. RCC299]
          Length = 1163

 Score = 37.3 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIG 250
           +  +PGD++ DP  G G     A KL  R  +G
Sbjct: 229 ARVRPGDVVCDPCVGGGAVLLAALKLGVRRVVG 261


>gi|94265652|ref|ZP_01289393.1| hypothetical protein MldDRAFT_4979 [delta proteobacterium MLMS-1]
 gi|93453823|gb|EAT04189.1| hypothetical protein MldDRAFT_4979 [delta proteobacterium MLMS-1]
          Length = 217

 Score = 37.3 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 13/96 (13%)

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR---- 283
           LD   G G    +A++L     G E       +A +     +             R    
Sbjct: 97  LDVGCGIGNVMLLAEQLGFEVYGFEKDPAPCALARRFFDEQRVQQADIWNYQDYHRFQVI 156

Query: 284 --------TEPRVAFNLLVERGLIQPGQILTNAQGN 311
                    + ++AF  L+E   +QPG IL     N
Sbjct: 157 YYFRPFADRQLQLAFEKLIEDK-LQPGGILIANHKN 191


>gi|84387340|ref|ZP_00990360.1| putative restriction-modification system methyltransferase [Vibrio
           splendidus 12B01]
 gi|84377789|gb|EAP94652.1| putative restriction-modification system methyltransferase [Vibrio
           splendidus 12B01]
          Length = 1303

 Score = 37.3 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 12/67 (17%)

Query: 211 ALLSRILVSSTKPG--DIILDPFFGSGTSGAVAKKL----------RRSFIGIEMKQDYI 258
             LS+++V+   P   D ILDP  G G+    A             + SF G ++ +D I
Sbjct: 158 KFLSQLIVAIAAPKSGDTILDPCAGEGSFLIAAHNAIEAAHTDFLSQTSFTGYDLSEDAI 217

Query: 259 DIATKRI 265
            IA  R 
Sbjct: 218 LIAMVRF 224


>gi|307110550|gb|EFN58786.1| hypothetical protein CHLNCDRAFT_56887 [Chlorella variabilis]
          Length = 525

 Score = 37.3 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 212 LLSRILVSSTKPGD----IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           L  R L     P D    ++LD   GSG SG    +    ++G+++ +  +D+A +R
Sbjct: 277 LTERALELLALPDDGEPKLLLDLGCGSGLSGEALTERGHVWVGLDISKAMLDVAAER 333


>gi|298674066|ref|YP_003725816.1| putative RNA methylase [Methanohalobium evestigatum Z-7303]
 gi|298287054|gb|ADI73020.1| putative RNA methylase [Methanohalobium evestigatum Z-7303]
          Length = 349

 Score = 37.3 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 31/116 (26%)

Query: 23  IIKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           ++ G++     +LP   +S+D I  DPPY             +L+ A + ++    SF  
Sbjct: 252 LLMGDAC----RLPFVDESMDAIVTDPPYG----------KSALIKAESMNYLYAMSF-- 295

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
                        RVLK      ++        +  ++++  F +  +   R    
Sbjct: 296 ---------KEMYRVLKKGKYAVIVTGNP----VRELVKDAGFVLHKEHHQRVHRS 338


>gi|292669690|ref|ZP_06603116.1| ribosomal protein L11 methyltransferase [Selenomonas noxia ATCC
           43541]
 gi|292648487|gb|EFF66459.1| ribosomal protein L11 methyltransferase [Selenomonas noxia ATCC
           43541]
          Length = 316

 Score = 37.3 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 34/101 (33%), Gaps = 9/101 (8%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKD-----GEKLHPTQKPEALLSRILVSSTK 222
           Y   +   E + +R  W     S  E +   D     G   H T    A+  R L     
Sbjct: 116 YIHTEKIGERIVVRPTWEEYTPSADEIVIELDPGAAFGTGAHATT---AMCLRWLEHLVS 172

Query: 223 PGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIAT 262
           PG  + D   GSG     A KL     I ++     + +A 
Sbjct: 173 PGMRVYDVGCGSGILAVAAAKLGAGEVIAMDYDPVAVSVAE 213


>gi|269925142|ref|YP_003321765.1| putative RNA methylase [Thermobaculum terrenum ATCC BAA-798]
 gi|269788802|gb|ACZ40943.1| putative RNA methylase [Thermobaculum terrenum ATCC BAA-798]
          Length = 359

 Score = 37.3 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 17/136 (12%)

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS--FIGIEMKQDYIDIATKRIA-SVQP 270
           + + +S  +  D+ LDPF G+GT         R    IG +  ++ I++A+  I    +P
Sbjct: 201 AMVWLSCPRNDDVFLDPFCGAGTILIERALAGRYRLIIGSDKSREAIEVASSNIGPRYKP 260

Query: 271 LGNIELTVLTGKRTEPRV-------AFNLLVERGLIQPGQILTNA-QGNISATVCADGTL 322
           +   +    +       V        F      G  +  + L  A        +  DG L
Sbjct: 261 IELHQWDATSIPLEHDSVDAIVTNPPFGYRY--GSKESNKELYPAFLQEAGRILKPDGRL 318

Query: 323 I---SGTELGSIHRVG 335
           +   +  +L   H +G
Sbjct: 319 VVVTTEDKLMR-HLIG 333



 Score = 36.5 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 26/97 (26%)

Query: 27  NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
           ++ S+   L   SVD I  +PP+  +   +                      E Y AF  
Sbjct: 267 DATSI--PLEHDSVDAIVTNPPFGYRYGSKESNK------------------ELYPAF-- 304

Query: 87  AWLLACRRVLKPNGTLWVIG--SYHNIFRIGTMLQNL 121
             L    R+LKP+G L V+          IG   + L
Sbjct: 305 --LQEAGRILKPDGRLVVVTTEDKLMRHLIGQDWREL 339


>gi|66825741|ref|XP_646225.1| hypothetical protein DDB_G0269722 [Dictyostelium discoideum AX4]
 gi|74997425|sp|Q55DA6|WBS22_DICDI RecName: Full=Probable methyltransferase WBSCR22 homolog
 gi|60474274|gb|EAL72211.1| hypothetical protein DDB_G0269722 [Dictyostelium discoideum AX4]
          Length = 287

 Score = 37.3 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           T+  E     + +  T  G ++LD   GSG SG V       +IG ++ Q  +D+A  R
Sbjct: 33  TKMAERAYELLAIPETAEGLMLLDIGCGSGISGDVITDAGHYWIGCDISQHMLDVAIDR 91


>gi|325473555|gb|EGC76748.1| adenine-specific DNA modification methyltransferase [Treponema
           denticola F0402]
          Length = 370

 Score = 37.3 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 59/168 (35%), Gaps = 24/168 (14%)

Query: 6   SLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH--- 62
            + + E   S F  K +I   +++ + +++    VD+ + DPPYN    G  Y   +   
Sbjct: 211 EVELKEPVFSNFNSKLEIFTKDAVLLSKEIKN--VDIAYIDPPYNQHPYGSNYFMLNLIL 268

Query: 63  --------SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH----- 109
                   S V  +T  W +    + Y A     L +   ++      + + SY+     
Sbjct: 269 KNRLDVPISPVSGITQGWKRSVFNKPYLA-----LKSMEEIISSLDARYAVISYNSEGFI 323

Query: 110 NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
           +   +  MLQ        +I +       N   +R  +  E L     
Sbjct: 324 SFEEMTNMLQKYGELKTVEIKYNTFRGSRNL-NKRNIHVSEYLFVLKK 370


>gi|325191902|emb|CCA26373.1| tRNA guanosine2'Omethyltransferase putative [Albugo laibachii Nc14]
          Length = 457

 Score = 37.3 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 18/42 (42%)

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           L    ++  +  D+++DPF G+G+             G ++ 
Sbjct: 224 LLMCNMALVRQNDVVMDPFIGTGSVLIPCANYGALCFGGDID 265


>gi|303251882|ref|ZP_07338053.1| 23S rRNA m(2)G2445 methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307247036|ref|ZP_07529090.1| Ribosomal RNA large subunit methyltransferase L [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|302649312|gb|EFL79497.1| 23S rRNA m(2)G2445 methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306856488|gb|EFM88637.1| Ribosomal RNA large subunit methyltransferase L [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 712

 Score = 37.3 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 20/91 (21%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +++ + + +  L +   +  +LIF DPP              S    + DSWD       
Sbjct: 599 NRLFQADCLQWLSECR-ERFELIFVDPP------------TFSNSKRMEDSWDVQRDHI- 644

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
                   +   +R+L  +GT+    +    
Sbjct: 645 ------KLMTRLKRILTADGTIVFSNNKRGF 669


>gi|260584770|ref|ZP_05852515.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Granulicatella elegans
           ATCC 700633]
 gi|260157427|gb|EEW92498.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Granulicatella elegans
           ATCC 700633]
          Length = 455

 Score = 37.3 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 12/109 (11%)

Query: 206 TQKPEALLSRILVSSTKPGD-IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK- 263
           T + E L    + ++   GD  ++D + G GT      K  +    +E+  D I +A + 
Sbjct: 289 TIQTEVLYHEAIQAAGLTGDETVVDAYCGIGTMSLAFAKRAKKVYAMEIVPDAIQMAKEN 348

Query: 264 -RIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
            RI  +    N+   V   ++  P       V+ G +QP  I+ +    
Sbjct: 349 ARINQI---DNVTFEVGAAEKVMP-----TWVDSG-LQPDVIVVDPPRK 388


>gi|237722629|ref|ZP_04553110.1| DUF1156 domain-containing protein [Bacteroides sp. 2_2_4]
 gi|229448439|gb|EEO54230.1| DUF1156 domain-containing protein [Bacteroides sp. 2_2_4]
          Length = 787

 Score = 37.3 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 1/73 (1%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN-IELTVLTGKRTE 285
           + DPF G G     A +L     G ++      I    +   Q  G  I  T    +R  
Sbjct: 4   VFDPFAGGGAIPLEAARLGCRSYGNDINPVAHIIEKGSVEFPQKYGKPIRYTEEEFRRIY 63

Query: 286 PRVAFNLLVERGL 298
            +   ++L+ +G+
Sbjct: 64  GKEGIDILIAKGI 76


>gi|190149329|ref|YP_001967854.1| N6-adenine-specific DNA methylase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307262642|ref|ZP_07544272.1| Ribosomal RNA large subunit methyltransferase L [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|229560161|sp|B3GZQ0|RLML_ACTP7 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|189914460|gb|ACE60712.1| putative N6-adenine-specific DNA methylase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306872065|gb|EFN03779.1| Ribosomal RNA large subunit methyltransferase L [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 712

 Score = 37.3 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 20/91 (21%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +++ + + +  L +   +  +LIF DPP              S    + DSWD       
Sbjct: 599 NRLFQADCLQWLAECR-ERFELIFVDPP------------TFSNSKRMEDSWDVQRDHI- 644

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
                   +   +R+L  +G +    +    
Sbjct: 645 ------KLMTQLKRILTADGIIVFSNNKRGF 669


>gi|94264614|ref|ZP_01288398.1| hypothetical protein MldDRAFT_5273 [delta proteobacterium MLMS-1]
 gi|93454968|gb|EAT05205.1| hypothetical protein MldDRAFT_5273 [delta proteobacterium MLMS-1]
          Length = 217

 Score = 37.3 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 13/96 (13%)

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR---- 283
           LD   G G    +A++L     G E       +A +     +             R    
Sbjct: 97  LDVGCGIGNVMLLAEQLGFEVYGFEKDPAPCALARRFFDEQRVQQADIWNYQDYHRFQVI 156

Query: 284 --------TEPRVAFNLLVERGLIQPGQILTNAQGN 311
                    + ++AF  L+E   +QPG IL     N
Sbjct: 157 YYFRPFADRQLQLAFEKLIEDK-LQPGGILIANHKN 191


>gi|127511265|ref|YP_001092462.1| ribosomal protein L11 methyltransferase [Shewanella loihica PV-4]
 gi|166223439|sp|A3Q9Q5|PRMA_SHELP RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|126636560|gb|ABO22203.1| LSU ribosomal protein L11P methyltransferase [Shewanella loihica
           PV-4]
          Length = 293

 Score = 37.3 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 34/108 (31%), Gaps = 7/108 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P       + +     G   HPT    AL    
Sbjct: 95  WEREWMDNFHPIQFGRRLWICPSWREVPDPEAVNVMLDPGLAFGTGTHPTT---ALCLEW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           L      G   +D   GSG     A KL      GI++    ID +  
Sbjct: 152 LDGLDLQGKEAIDFGCGSGILAVAALKLGAAKVTGIDIDYQAIDASKA 199


>gi|302803333|ref|XP_002983420.1| hypothetical protein SELMODRAFT_118182 [Selaginella moellendorffii]
 gi|300149105|gb|EFJ15762.1| hypothetical protein SELMODRAFT_118182 [Selaginella moellendorffii]
          Length = 293

 Score = 37.3 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF-FGSGTSGAVAKKLRRSFIGIE 252
           R        +H   K       +L        ++LD    GSG SG    +    +IG++
Sbjct: 20  RKYTTSSRIIHIQAKLTERAMELLALPDDKPKLLLDIAGCGSGLSGESLSEKGHHWIGMD 79

Query: 253 MKQDYIDIATKR 264
           + Q  +++A +R
Sbjct: 80  ISQSMLEVALER 91


>gi|294508850|ref|YP_003572909.1| Conserved hypothetical protein containing RNA methylase domain
           [Salinibacter ruber M8]
 gi|294345179|emb|CBH25957.1| Conserved hypothetical protein containing RNA methylase domain
           [Salinibacter ruber M8]
          Length = 369

 Score = 37.3 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKL--RRSFIGIEMKQDYIDIAT 262
           L     P + +LDPF GSGT    A  L       G +  ++ +  A 
Sbjct: 208 LAHLDAPPNTLLDPFCGSGTILLEAADLWADTQCYGSDWNEEAVSGAR 255


>gi|158340651|ref|YP_001521819.1| hypothetical protein AM1_D0008 [Acaryochloris marina MBIC11017]
 gi|158310892|gb|ABW32505.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 275

 Score = 37.3 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 57/146 (39%), Gaps = 16/146 (10%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD- 225
           +    + +++D++ R  W  P      R R            P+ L+SR++  +      
Sbjct: 6   DQTTKQYSSKDLKQRKTWYSPAAEAYNRTRPH---------YPDTLISRVVELTQLENGS 56

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
            IL+   G GT+      L  S + +E   D+ +IA +   +     N+E+   + +  +
Sbjct: 57  RILEIGCGPGTATVSFANLGFSMLCLEPNPDFYEIARR---NCSHYPNLEIKNTSFEEWK 113

Query: 286 PRV-AFNLLVERGLIQ--PGQILTNA 308
           P    FN ++    I   P ++    
Sbjct: 114 PEAKPFNAVLAATSIHWIPAEVAYPK 139


>gi|157692175|ref|YP_001486637.1| site-specific DNA-methyltransferase (adenine-specific) [Bacillus
           pumilus SAFR-032]
 gi|157680933|gb|ABV62077.1| site-specific DNA-methyltransferase (adenine-specific) [Bacillus
           pumilus SAFR-032]
          Length = 185

 Score = 37.3 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 35/112 (31%), Gaps = 9/112 (8%)

Query: 225 DIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
              LD F GSG  G  A        I ++     I      +  ++     E+     KR
Sbjct: 43  GWALDLFAGSGGLGIEALSRGFDHCIFVDRDMKAIQTIKGNLNQLELSDQSEVFRNEAKR 102

Query: 284 TEPRV-----AFNLLVERGLIQPGQI--LTNAQGNISATVCADGTLISGTEL 328
               V     +F  +      +  Q+  L +      A +  DG ++   + 
Sbjct: 103 ALAAVVKREESFQAIFLDPPYKDQQLKALLDMIDEH-ALLTDDGVIVCEHDK 153


>gi|153823590|ref|ZP_01976257.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|126518891|gb|EAZ76114.1| conserved hypothetical protein [Vibrio cholerae B33]
          Length = 500

 Score = 37.3 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 20/103 (19%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + + ++ + +  L    ++  DLIF DPP         +     +        D  +   
Sbjct: 387 QHQYVQADCLQWLANAQSQY-DLIFIDPP--------TFSNSKRMEQTFDVQRDHVT--- 434

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                    +   +R+L+P GT+    +  +       L  L 
Sbjct: 435 --------LMTNLKRLLRPEGTIVFSNNKRHFKMDMEALHALG 469


>gi|47209908|emb|CAG12706.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 505

 Score = 37.3 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 6/21 (28%), Positives = 12/21 (57%)

Query: 27  NSISVLEKLPAKSVDLIFADP 47
           +++  ++KL     DL+  DP
Sbjct: 114 DNLKFMKKLRDAKFDLMLTDP 134


>gi|15899066|ref|NP_343671.1| cobalt-precorrin-6Y C(15)-methyltransferase [Sulfolobus
           solfataricus P2]
 gi|284175267|ref|ZP_06389236.1| cobalt-precorrin-6Y C(15)-methyltransferase [Sulfolobus
           solfataricus 98/2]
 gi|48428143|sp|Q97WC7|CBIT_SULSO RecName: Full=Probable cobalt-precorrin-6Y C(15)-methyltransferase
           [decarboxylating]
 gi|13815603|gb|AAK42461.1| Cobalamin biosynthesis precorrin-8W decarboxylase, putative (cbiT)
           [Sulfolobus solfataricus P2]
 gi|261600813|gb|ACX90416.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Sulfolobus solfataricus 98/2]
          Length = 199

 Score = 37.3 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 10/108 (9%)

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
            +W   I    + L  +D E   P  K E     +     K GD +LD   G+G+    A
Sbjct: 1   MEWNYVIPGIPDNLFERDEEI--PMTKEEIRALALSKLRIKKGDKVLDIGCGTGSITVEA 58

Query: 242 KKL----RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
             L     R + GI+ ++  I++  +   + +  G +   VL      
Sbjct: 59  SLLVGNSGRVY-GIDKEEKAINLTRR---NAEKFGVLNNIVLIKGEAP 102


>gi|332299058|ref|YP_004440980.1| Site-specific DNA-methyltransferase (adenine-specific) [Treponema
           brennaborense DSM 12168]
 gi|332182161|gb|AEE17849.1| Site-specific DNA-methyltransferase (adenine-specific) [Treponema
           brennaborense DSM 12168]
          Length = 509

 Score = 37.3 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 70/225 (31%), Gaps = 29/225 (12%)

Query: 23  IIKGN--SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           I+ G+  +++VL   P    + I  +PP+  + N             + +  D  +S E+
Sbjct: 265 IVHGDGLALNVLNLQPKDKYNCILMNPPFGGEFNK----------SDLQNFPDDLASSES 314

Query: 81  YDAFTRAWLLACRR-----VLKPNGTLWVIGSYHNIFRIGTM----LQNLNFWILNDIVW 131
            D F    +    +     ++ P+G L+   +     +   M    L  +     +    
Sbjct: 315 ADLFVARIIYCLEKDGRCGLVLPDGLLFNSDNSKVNLKKKLMTECNLHTIIRLPSSVFAP 374

Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
             S         +     E  IW       +G            ED++   +W       
Sbjct: 375 YTSINTNLLFFDKTGKTEE--IWFYRMDMPEGVKHFNKTNPIKREDMKCVDEWWNNRVEI 432

Query: 192 SERLRNKDGEKLHPTQKP------EALLSRILVSSTKPGDIILDP 230
           ++   ++   +    +K       E      L    +  D++L P
Sbjct: 433 ADEKESETSTQTFKAKKYTFAEIEERGFDLDLCGYPEEEDVVLTP 477


>gi|283853715|ref|ZP_06370944.1| phage DNA methylase [Desulfovibrio sp. FW1012B]
 gi|283570893|gb|EFC18924.1| phage DNA methylase [Desulfovibrio sp. FW1012B]
          Length = 190

 Score = 37.3 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 12/77 (15%)

Query: 2  SQKNSLAINENQNSIFEWKD------KIIKGNSISVLEKLP--AKSVDLIFADPPYN--L 51
          +    + I+ N + I +W+       K+I  ++IS L+KL   +++V  I+ADPPY+   
Sbjct: 6  ASTEQIGIDINPSVIQKWEKSEDSLCKLINDDAISALQKLKLDSETV--IYADPPYHPLT 63

Query: 52 QLNGQLYRPDHSLVDAV 68
          +   ++Y+ D+SL D +
Sbjct: 64 RRRRKVYKHDYSLNDHI 80


>gi|261350695|ref|ZP_05976112.1| putative methyltransferase [Methanobrevibacter smithii DSM 2374]
 gi|288861478|gb|EFC93776.1| putative methyltransferase [Methanobrevibacter smithii DSM 2374]
          Length = 272

 Score = 37.3 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 51/133 (38%), Gaps = 9/133 (6%)

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG----TSGAVAKKLRRSFIGIEMKQD 256
           +  H  ++   L++     +    +     F GSG    T     +      IGIE ++D
Sbjct: 105 DSFHFYERYIGLINNESKLAKFNEEKTF-LFLGSGPLPLTLIMFNEVFGCKCIGIEQQED 163

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATV 316
              ++ K +  +  L +    V+  + T   + +++L+     +P + + +   NI   V
Sbjct: 164 VAQLSRKVLKKL-NLDDDIKIVIGNENTIADLDYDILMVAAFAEPKERVFS---NIWDVV 219

Query: 317 CADGTLISGTELG 329
                ++  T  G
Sbjct: 220 SEKTPVLYRTYTG 232


>gi|332158379|ref|YP_004423658.1| sterol biosynthesis methyltransferase related protein [Pyrococcus
           sp. NA2]
 gi|331033842|gb|AEC51654.1| sterol biosynthesis methyltransferase related protein [Pyrococcus
           sp. NA2]
          Length = 228

 Score = 37.3 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           Q     L  +L+        +LD   G G    + +      +GI++ ++ I+ A KR A
Sbjct: 23  QSRIEALEPLLIKYMPRRGKVLDLACGVGGFSFLLEDHGFEVVGIDISEEMIESA-KRYA 81

Query: 267 SVQPLGNIELTVLTGKRTEPRVAF 290
             +    +E  V   K+    + F
Sbjct: 82  EARE-SKVEFLVGDAKK----IPF 100


>gi|312962463|ref|ZP_07776954.1| SAM-dependent methyltransferase [Pseudomonas fluorescens WH6]
 gi|311283390|gb|EFQ61980.1| SAM-dependent methyltransferase [Pseudomonas fluorescens WH6]
          Length = 756

 Score = 37.3 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
           F  K+++ +G+ ++ LE    +  DLIF DPP
Sbjct: 643 FSDKNRLEQGDVMAWLEASRDE-FDLIFIDPP 673


>gi|297620448|ref|YP_003708585.1| 23S rRNA (Uracil-5-)-methyltransferase [Waddlia chondrophila WSU
           86-1044]
 gi|297375749|gb|ADI37579.1| 23S rRNA (Uracil-5-)-methyltransferase [Waddlia chondrophila WSU
           86-1044]
          Length = 482

 Score = 37.3 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 6/69 (8%)

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT-----KRIASVQPL-GNIEL 276
              ++ D + G+GT G  A K  +  +G+E+  +    A       RI ++  L G +  
Sbjct: 332 KEQVVYDLYCGTGTLGICAAKRAKQVVGVELSPESAHDARHNAKENRIENLTILTGAVRR 391

Query: 277 TVLTGKRTE 285
            +   K  E
Sbjct: 392 VLEEIKEKE 400


>gi|282889691|ref|ZP_06298230.1| hypothetical protein pah_c004o034 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500265|gb|EFB42545.1| hypothetical protein pah_c004o034 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 449

 Score = 37.3 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 51/140 (36%), Gaps = 28/140 (20%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGT-SGAVAKKLR 245
           IC     +      +++P Q  E++   +L ++        LD F G GT +   A + +
Sbjct: 270 ICDHHFHISPSAFFQVNPAQ-AESIYQHVLSLADLDKTKTFLDAFCGVGTMTLIAAGQAK 328

Query: 246 RSFIGIEMKQD-------------------YIDIATKRIASVQPLGNIELTVLTGKRTEP 286
              IGIE                       Y D A    + +Q L +I++  L   R   
Sbjct: 329 -ECIGIECVPQAIEDANANAQLNQISNAVFYCDHAE---SKIQSLKDIDVVFLNPPRKGC 384

Query: 287 RVAFNLLVERGLIQPGQILT 306
               +LL    +++P  IL 
Sbjct: 385 EE--SLLNRLKIVKPETILY 402


>gi|254503813|ref|ZP_05115964.1| ribosomal protein L11 methyltransferase [Labrenzia alexandrii
           DFL-11]
 gi|222439884|gb|EEE46563.1| ribosomal protein L11 methyltransferase [Labrenzia alexandrii
           DFL-11]
          Length = 221

 Score = 37.3 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 3/42 (7%)

Query: 227 ILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIAS 267
           +LD   GSG     AK     S  G+++      IA  R+ +
Sbjct: 81  VLDFACGSGLVAIAAKMAGAGSCHGVDIDP--FAIAAARLNA 120


>gi|195450985|ref|XP_002072718.1| GK13537 [Drosophila willistoni]
 gi|194168803|gb|EDW83704.1| GK13537 [Drosophila willistoni]
          Length = 488

 Score = 37.3 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            +   PGD++ DPF G+G+    A K     +G ++ 
Sbjct: 210 QALVAPGDLVFDPFVGTGSLLVSAAKFGGYVMGADID 246


>gi|18311009|ref|NP_562943.1| ribosomal protein L11 methyltransferase [Clostridium perfringens
           str. 13]
 gi|110801769|ref|YP_699308.1| ribosomal protein L11 methyltransferase [Clostridium perfringens
           SM101]
 gi|168204734|ref|ZP_02630739.1| ribosomal protein L11 methyltransferase [Clostridium perfringens E
           str. JGS1987]
 gi|168208729|ref|ZP_02634354.1| ribosomal protein L11 methyltransferase [Clostridium perfringens B
           str. ATCC 3626]
 gi|168212936|ref|ZP_02638561.1| ribosomal protein L11 methyltransferase [Clostridium perfringens
           CPE str. F4969]
 gi|169343726|ref|ZP_02864725.1| ribosomal protein L11 methyltransferase [Clostridium perfringens C
           str. JGS1495]
 gi|182626897|ref|ZP_02954631.1| ribosomal protein L11 methyltransferase [Clostridium perfringens D
           str. JGS1721]
 gi|38605393|sp|Q8XIT6|PRMA_CLOPE RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|123145978|sp|Q0SRE9|PRMA_CLOPS RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|18145691|dbj|BAB81733.1| ribosomal protein L11 methyltransferase [Clostridium perfringens
           str. 13]
 gi|110682270|gb|ABG85640.1| ribosomal protein L11 methyltransferase [Clostridium perfringens
           SM101]
 gi|169298286|gb|EDS80376.1| ribosomal protein L11 methyltransferase [Clostridium perfringens C
           str. JGS1495]
 gi|170663557|gb|EDT16240.1| ribosomal protein L11 methyltransferase [Clostridium perfringens E
           str. JGS1987]
 gi|170713216|gb|EDT25398.1| ribosomal protein L11 methyltransferase [Clostridium perfringens B
           str. ATCC 3626]
 gi|170715644|gb|EDT27826.1| ribosomal protein L11 methyltransferase [Clostridium perfringens
           CPE str. F4969]
 gi|177907747|gb|EDT70359.1| ribosomal protein L11 methyltransferase [Clostridium perfringens D
           str. JGS1721]
          Length = 313

 Score = 37.3 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 3/103 (2%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSSTKPG 224
            Y       E + ++  W     +G E +   D      T   E   +  + L    K  
Sbjct: 119 KYYKPIKIGEKIVIKPIWEEYEPTGEEMVVELDPGMAFGTGDHETTRMCVQALDKYVKAD 178

Query: 225 DIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIA 266
             + D   GSG    VA KL  +  +G+++    +D A + I+
Sbjct: 179 TTVFDIGTGSGILALVASKLGAKHVVGVDLDPVAVDSAKENIS 221


>gi|310641493|ref|YP_003946251.1| RNA methyltransferase, rsmd family [Paenibacillus polymyxa SC2]
 gi|309246443|gb|ADO56010.1| RNA methyltransferase, RsmD family [Paenibacillus polymyxa SC2]
          Length = 179

 Score = 37.3 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 2/79 (2%)

Query: 225 DIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            + LD F GSG  G  A        + I+M+   ID+  + +      G  E+      R
Sbjct: 9   GVALDLFAGSGGLGIEALSRGMDKAVFIDMESKSIDVIKENLRKTGLEGKAEVFRNDAGR 68

Query: 284 TEPRVAF-NLLVERGLIQP 301
               +A    L +   + P
Sbjct: 69  ALKALAKRGALFDAVFLDP 87


>gi|307260512|ref|ZP_07542206.1| Ribosomal RNA large subunit methyltransferase L [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306869824|gb|EFN01607.1| Ribosomal RNA large subunit methyltransferase L [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 712

 Score = 37.3 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 20/91 (21%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +++ + + +  L +   +  +LIF DPP              S    + DSWD       
Sbjct: 599 NRLFQADCLQWLAECR-ERFELIFVDPP------------TFSNSKRMEDSWDVQRDHI- 644

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
                   +   +R+L  +G +    +    
Sbjct: 645 ------KLMTQLKRILTADGIIVFSNNKRGF 669


>gi|269467806|gb|EEZ79561.1| N6-adenine-specific methylase [uncultured SUP05 cluster bacterium]
          Length = 190

 Score = 37.3 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 23/42 (54%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY 49
           ++ +N+  +   K  +   +++  L++   ++ D IF DPP+
Sbjct: 85  SLEKNRKLLKSDKIHLFNQDALKFLDQKSDQTFDFIFLDPPF 126


>gi|226947869|ref|YP_002802960.1| cyclopropane-fatty-acyl-phospholipid synthase [Clostridium
           botulinum A2 str. Kyoto]
 gi|226840802|gb|ACO83468.1| cyclopropane-fatty-acyl-phospholipid synthase [Clostridium
           botulinum A2 str. Kyoto]
          Length = 392

 Score = 37.3 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 60/304 (19%), Positives = 96/304 (31%), Gaps = 33/304 (10%)

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F ++       V   +GT    G     FRI          IL D          N   
Sbjct: 8   KFLKSIFSDTFEVKFWDGTTEKFGEGDIKFRILINDHLSKSDILKDPFLTFGEAYMNKVI 67

Query: 143 RRFQNAHETL---------IWASPSPKAKGYTFNYDALKAANEDVQMRSD--------WL 185
               N  E +                  K Y     ++K + +D+    D        WL
Sbjct: 68  DFEGNVQEVIESVYRNKDSFLHKACLFEKLYKIVPHSIKNSKKDIHHHYDLGNDFYKLWL 127

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST-KPGDIILDPFFGSGTSGA-VAKK 243
               + S        + L+  Q  +  +  IL      PG  +LD   G G      AKK
Sbjct: 128 DKTMNYSCSYFKSKDDSLYQAQLNK--VDYILKKLNLHPGQKLLDIGCGWGDLIITAAKK 185

Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR-TEPRVAFNLLVERGLIQPG 302
                +GI +  +  +   +RI        +E+ VL  +   +    F+ +V  G+I+  
Sbjct: 186 YGVKALGITLSNEQFNRVNERIKENHLENQVEVRVLDYRELLKTDEKFHRVVSVGMIE-- 243

Query: 303 QILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNG--WNFWYFEKLGELHS 360
                 + NI   + A   L+    +  +H + A+      C G  W   Y    G + S
Sbjct: 244 ---HVGRKNIPVYMNAVSDLLEENGVCLLHCITAQQE----CEGNQWIKKYIFPGGYIPS 296

Query: 361 INTL 364
           I  L
Sbjct: 297 IREL 300


>gi|222097757|ref|YP_002531814.1| ribosomal protein l11 methyltransferase [Bacillus cereus Q1]
 gi|254782829|sp|B9IY79|PRMA_BACCQ RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|221241815|gb|ACM14525.1| ribosomal protein L11 methyltransferase [Bacillus cereus Q1]
          Length = 312

 Score = 37.3 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 56/173 (32%), Gaps = 26/173 (15%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-------------HPTQKPEALL 213
           ++             SD    + +  E   +   EK+             HPT     + 
Sbjct: 109 DWATAWKKYYHPVQISDTFTIVPTWEEYTPSSPEEKIIELDPGMAFGTGTHPTTT---MC 165

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATK--RIASVQP 270
            R L  + +PG+ I+D   GSG     A KL  S +   ++    ++ A    R+     
Sbjct: 166 IRALERTVQPGNTIIDVGTGSGVLSIAAAKLGASSVQAYDLDPVAVESAEMNVRLNKTDD 225

Query: 271 LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
           + ++    L      P      L+   L+    +L       +A V   G L 
Sbjct: 226 IVSVGQNSLLEGIEGPV----DLIVANLLAEIILLFPED---AARVVKSGGLF 271


>gi|169796595|ref|YP_001714388.1| tRNA(guanine-7)methyltransferase [Acinetobacter baumannii AYE]
 gi|215484056|ref|YP_002326281.1| tRNA (guanine-N(7)-)-methyltransferase [Acinetobacter baumannii
           AB307-0294]
 gi|169149522|emb|CAM87411.1| tRNA(guanine-7)methyltransferase [Acinetobacter baumannii AYE]
 gi|213987382|gb|ACJ57681.1| tRNA (guanine-N(7)-)-methyltransferase [Acinetobacter baumannii
           AB307-0294]
          Length = 246

 Score = 37.3 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 23/125 (18%)

Query: 18  EWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           E K+ +++  ++I VL ++P  S++ +            QLY P         D W K  
Sbjct: 119 ELKNLRVLDADAIQVLREMPDNSINCV------------QLYFP---------DPWQKKR 157

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            F+         +    + L+  GT      +         + +    + N      S P
Sbjct: 158 HFKR-RFVIHERMQLVEQKLELGGTFHAATDWEPYAEWMLDVLDNRPNLENLAGKGNSYP 216

Query: 137 MPNFR 141
            P +R
Sbjct: 217 RPEWR 221


>gi|153840617|ref|ZP_01993284.1| methyltransferase [Vibrio parahaemolyticus AQ3810]
 gi|149745721|gb|EDM56851.1| methyltransferase [Vibrio parahaemolyticus AQ3810]
          Length = 159

 Score = 37.3 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 20/108 (18%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + +  + + +  LE    +  DLIF DPP         +     +  +     D      
Sbjct: 53  QHRFEQADCLQWLENAKGEY-DLIFIDPP--------TFSNSKRMETSFDVQRDHIK--- 100

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
                    +   +R+L+  GT+    +  +       L  L     N
Sbjct: 101 --------LMTNLKRLLRAGGTIVFSNNKRHFKMDEEGLAELGLKAQN 140


>gi|320105218|ref|YP_004180809.1| type 12 methyltransferase [Isosphaera pallida ATCC 43644]
 gi|319752500|gb|ADV64260.1| Methyltransferase type 12 [Isosphaera pallida ATCC 43644]
          Length = 264

 Score = 36.9 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 213 LSRILVSSTKPGDI-ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           + RIL     P D  ILD   G GT+    ++  R  +G+++ +  ++ A +R
Sbjct: 39  VRRILELRQVPRDAAILDVGCGWGTTLEALERDGRRVVGMDVSRKSLE-ALER 90


>gi|307544769|ref|YP_003897248.1| ribosomal protein L11 methyltransferase [Halomonas elongata DSM
           2581]
 gi|307216793|emb|CBV42063.1| ribosomal protein L11 methyltransferase [Halomonas elongata DSM
           2581]
          Length = 304

 Score = 36.9 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 33/107 (30%), Gaps = 13/107 (12%)

Query: 227 ILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIELTV----LTG 281
           +LD   GSG     A +L  R   G ++    +  +     + +  G  E  +       
Sbjct: 170 VLDVGCGSGILAIAALRLGARHATGTDIDPQALTASRD---NAERNGVDETALRLEYPES 226

Query: 282 KRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTEL 328
              E R     LV   ++     L      I+  V   G L     L
Sbjct: 227 LEAEARFP---LVVANIL--AGPLVELADEIAERVAPGGRLALSGIL 268


>gi|240102649|ref|YP_002958958.1| SAM-dependent methyltransferase [Thermococcus gammatolerans EJ3]
 gi|239910203|gb|ACS33094.1| SAM-dependent methyltransferase [Thermococcus gammatolerans EJ3]
          Length = 196

 Score = 36.9 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 13/91 (14%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG---------QLYRPDHSLVD 66
           + E+ D  +  N    + ++P +  D IF D PYN+             +  R    ++ 
Sbjct: 95  LPEFADNFVVANVRDYVREMPDEYFDFIFFD-PYNVHPKDLPETVNHLIRACRTGGRIIF 153

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLK 97
                  +  +FE    F        RR LK
Sbjct: 154 YTYHDVLESLNFEWVGDFLTE---EVRRKLK 181


>gi|224076074|ref|XP_002191668.1| PREDICTED: Williams Beuren syndrome chromosome region 22
           [Taeniopygia guttata]
          Length = 462

 Score = 36.9 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 24/49 (48%)

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           +L        ++LD   GSG SG    +    +IG+++    +D+A +R
Sbjct: 229 LLGLPEDRPCLLLDVGCGSGLSGDYISEEGHYWIGMDISPAMLDVAVER 277


>gi|217034087|ref|ZP_03439508.1| hypothetical protein HP9810_893g34 [Helicobacter pylori 98-10]
 gi|216943482|gb|EEC22936.1| hypothetical protein HP9810_893g34 [Helicobacter pylori 98-10]
          Length = 327

 Score = 36.9 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 48/113 (42%), Gaps = 12/113 (10%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +++ + ++  ++EK+     D+++ DPPYN +  G  Y   +++      +    +   +
Sbjct: 186 NEVYQQDASELIEKISG---DILYLDPPYNARQYGANYHLLNTIAAYTPFAPKGKTGLPS 242

Query: 81  YDA--FT--RAWLLACRRVLKPNGTLWVIGSYHNIF-----RIGTMLQNLNFW 124
           Y    F      L A   ++K     ++  SY+N        IG +L+    +
Sbjct: 243 YQKSSFCSRAKILNAFENLIKKARFKYIFLSYNNEGLMSETEIGNILKKYGAY 295


>gi|157864062|ref|XP_001687578.1| methyltransferase-like protein [Leishmania major]
 gi|68223789|emb|CAJ02021.1| methyltransferase-like protein [Leishmania major strain Friedlin]
          Length = 615

 Score = 36.9 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 6/116 (5%)

Query: 142 GRRFQNAHETLIWA---SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
            R+   A+   +     +P P A+G+  N   L+  +  + + S     + +   R R  
Sbjct: 168 WRQPGRAYYVFLQHAVENPPPGAQGWVSNGPLLRVFHCRLCVESSRSALLATYDLRKRPY 227

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            G    P   PE  L  + +S    G  + DPF G+G+    A        G +  
Sbjct: 228 IGTTSMP---PEESLMMVNMSGVCRGHYVYDPFCGTGSLLIAAAHYGARTFGSDAD 280


>gi|268565913|ref|XP_002639583.1| Hypothetical protein CBG04220 [Caenorhabditis briggsae]
          Length = 430

 Score = 36.9 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 6/72 (8%)

Query: 37  AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD---AFTRAW-LLAC 92
               D+I ADPPY ++   +    +        + + ++   E YD   AF     L A 
Sbjct: 291 NAKFDVIVADPPYGVREKARKTVKNKK--SDANEDYIQYQQKEDYDLEAAFCDLLNLAAM 348

Query: 93  RRVLKPNGTLWV 104
             V+    + W 
Sbjct: 349 ALVMNGRVSFWY 360


>gi|308063990|gb|ADO05877.1| adenine-specific methyltransferase [Helicobacter pylori Sat464]
          Length = 329

 Score = 36.9 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 48/113 (42%), Gaps = 12/113 (10%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +++ + ++  ++EK+     D+++ DPPYN +  G  Y   +++      +    +   +
Sbjct: 188 NEVYQQDANELIEKISG---DILYLDPPYNARQYGANYHLLNTIAAYTPFAPKGKTGLPS 244

Query: 81  YDA--FT-RAWLLACRRVLKPNGTL-WVIGSYHNIF-----RIGTMLQNLNFW 124
           Y    F  RA +L     L       ++  SY+N        IG +L+    +
Sbjct: 245 YQKSSFCSRAKILNAFEKLIKTARFKYIFLSYNNEGLMGETEIGNILKKYGAY 297


>gi|307611549|emb|CBX01229.1| hypothetical protein LPW_29271 [Legionella pneumophila 130b]
          Length = 184

 Score = 36.9 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 11  ENQNSIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
           +N    F+  +  +IK ++++ L++   +  DLIF DPPY L  
Sbjct: 88  QNTIRQFDTPNLHLIKTDTLNYLKQ-STEQFDLIFLDPPYALNY 130


>gi|295101444|emb|CBK98989.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Faecalibacterium prausnitzii L2-6]
          Length = 311

 Score = 36.9 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 10/125 (8%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           ++G+  +  E LP   +DLI ++PPY         +P+ +   A+        + E    
Sbjct: 195 VEGDLFTYWESLPEGQLDLIVSNPPYLTAQEMSELQPEVAKEPAMA-----LEAGEDGLV 249

Query: 84  FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP--NFR 141
           F +A     ++ L+P G L +   +     +  +L+   +    DI  RK          
Sbjct: 250 FYKAIAEHYQKALRPGGALALEIGWQQREAVTALLEANGW---ADIACRKDFGGNDRCVT 306

Query: 142 GRRFQ 146
            RR Q
Sbjct: 307 ARRPQ 311


>gi|291549934|emb|CBL26196.1| 23S rRNA m(5)U-1939 methyltransferase [Ruminococcus torques L2-14]
          Length = 456

 Score = 36.9 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 23/40 (57%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
             ++ D F G+GT G V   + +  IG+E+ ++ ++ A +
Sbjct: 311 NQVVFDLFSGTGTIGQVLAPVAKKVIGVEIIEEAVEAAKE 350


>gi|257054787|ref|YP_003132619.1| methylase of polypeptide chain release factors [Saccharomonospora
           viridis DSM 43017]
 gi|256584659|gb|ACU95792.1| methylase of polypeptide chain release factors [Saccharomonospora
           viridis DSM 43017]
          Length = 227

 Score = 36.9 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 14/87 (16%)

Query: 37  AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
               DLI  DPP+      + +RP      A+TD        E Y A TR +L A   + 
Sbjct: 124 DGRFDLIVFDPPF------RWFRPRTVFESAMTD--------ENYGAMTRFFLGARDHLT 169

Query: 97  KPNGTLWVIGSYHNIFRIGTMLQNLNF 123
                L   G+  ++  + ++     F
Sbjct: 170 DNGRMLIFFGTSGDLDYLTSLADETGF 196


>gi|226952708|ref|ZP_03823172.1| tRNA(guanine-7)methyltransferase [Acinetobacter sp. ATCC 27244]
 gi|226836549|gb|EEH68932.1| tRNA(guanine-7)methyltransferase [Acinetobacter sp. ATCC 27244]
          Length = 238

 Score = 36.9 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 23/125 (18%)

Query: 18  EWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           E K+ +++  ++I VL ++P  S++ +            QLY P         D W K  
Sbjct: 111 ELKNLRVLDADAIQVLREMPDNSINCV------------QLYFP---------DPWQKKR 149

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            F+         +    + L   GT      +         + +    + N      S P
Sbjct: 150 HFKR-RFVIHERMQLVEQKLALGGTFHAATDWEPYAEWMLDVLDNRPNLENLAGKGNSYP 208

Query: 137 MPNFR 141
            P++R
Sbjct: 209 RPDWR 213


>gi|170290320|ref|YP_001737136.1| adenine-specific DNA methylase [Candidatus Korarchaeum cryptofilum
           OPF8]
 gi|170174400|gb|ACB07453.1| Adenine-specific DNA methylase containing a Zn-ribbon [Candidatus
           Korarchaeum cryptofilum OPF8]
          Length = 972

 Score = 36.9 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 2/29 (6%)

Query: 22  KIIKGNSISVLEKLPAK-SVDLIFADPPY 49
           K++  ++ ++L KL ++   DLI  DPPY
Sbjct: 519 KVLLDDA-TILNKLNSEEKFDLIVTDPPY 546


>gi|167751821|ref|ZP_02423948.1| hypothetical protein ALIPUT_00063 [Alistipes putredinis DSM 17216]
 gi|167660062|gb|EDS04192.1| hypothetical protein ALIPUT_00063 [Alistipes putredinis DSM 17216]
          Length = 282

 Score = 36.9 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 7/82 (8%)

Query: 25  KGNSISVLEKLPA--KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
           +G+++  L   P   +  DLI ++PPY  +      R +   V     +   F   +   
Sbjct: 165 QGDALGEL--FPGQREQFDLIVSNPPYIPRREKASMRVN---VTGYEPAEALFVEDDDPL 219

Query: 83  AFTRAWLLACRRVLKPNGTLWV 104
            F RA     RR+L+P G L+ 
Sbjct: 220 IFYRAIARNARRLLRPGGRLYF 241


>gi|154332197|ref|XP_001561915.1| methyltransferase-like protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134059236|emb|CAM36935.1| methyltransferase-like protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 621

 Score = 36.9 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 6/116 (5%)

Query: 142 GRRFQNAHETLIWASPS---PKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
            R+ + A+   +  +     P AKG+  N   L+  +  + + S     + +   R R  
Sbjct: 184 WRQPERAYYIFLQHAVENALPGAKGWISNGPLLRVFHCCLCVESSRSALLATYDLRKRPY 243

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            G    P   PE  L  + +S       + DPF G+G+    A        G +  
Sbjct: 244 IGTTSMP---PEESLVMVNMSGVCRSHYVYDPFCGTGSLLIAAAHYGARTFGSDAD 296


>gi|126459785|ref|YP_001056063.1| hypothetical protein Pcal_1172 [Pyrobaculum calidifontis JCM 11548]
 gi|126249506|gb|ABO08597.1| conserved hypothetical protein [Pyrobaculum calidifontis JCM 11548]
          Length = 236

 Score = 36.9 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 6/89 (6%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSG---TSGA 239
           W +P+ +            +     PE ++ R+L ++  +PG+I+ D   GSG       
Sbjct: 2   WDLPLVNLYSTDIVGFMYDVPFVATPEVVVRRMLQLARVQPGEILYD--LGSGDGRIVIM 59

Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            AK+      G+E+++D  + +  RI  +
Sbjct: 60  AAKEFGARAFGVEIRKDLYEQSMARIKDL 88


>gi|124026926|ref|YP_001012246.1| methyl transferase [Hyperthermus butylicus DSM 5456]
 gi|123977620|gb|ABM79901.1| methyl transferase [Hyperthermus butylicus DSM 5456]
          Length = 312

 Score = 36.9 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 29/84 (34%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPP-YNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +I+  ++   +E LP +  D I  DPP +N+                      +  S E 
Sbjct: 210 RIVHADATIAVELLPDEYFDKILHDPPRFNMA--------------------GELYSLEF 249

Query: 81  YDAFTRAWLLACRRVLKPNGTLWV 104
           Y            RVLKP G L+ 
Sbjct: 250 Y--------QQLYRVLKPGGKLYH 265


>gi|108762138|ref|YP_631893.1| hypothetical protein MXAN_3707 [Myxococcus xanthus DK 1622]
 gi|108466018|gb|ABF91203.1| hypothetical protein MXAN_3707 [Myxococcus xanthus DK 1622]
          Length = 287

 Score = 36.9 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 7/26 (26%), Positives = 18/26 (69%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADP 47
           +++  ++   L+ LP+++ D++F DP
Sbjct: 184 EVVHADAREYLKTLPSRAFDVVFFDP 209


>gi|89891550|ref|ZP_01203055.1| putative methyltransferase [Flavobacteria bacterium BBFL7]
 gi|89516324|gb|EAS18986.1| putative methyltransferase [Flavobacteria bacterium BBFL7]
          Length = 183

 Score = 36.9 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNL 51
           K ++ S LEK    S DLIFADPPY L
Sbjct: 97  KADAFSFLEK-HKGSYDLIFADPPYGL 122


>gi|300711019|ref|YP_003736833.1| hypothetical protein HacjB3_08290 [Halalkalicoccus jeotgali B3]
 gi|299124702|gb|ADJ15041.1| hypothetical protein HacjB3_08290 [Halalkalicoccus jeotgali B3]
          Length = 814

 Score = 36.9 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 32/99 (32%), Gaps = 11/99 (11%)

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
           +   A  +     G E+   + D     +   +  G IE      +  EP+V        
Sbjct: 438 TLVAAGAMG--AYGSEVDTSFSD--EDFLPPEEQPGYIEYLPAELQPAEPQV-------T 486

Query: 297 GLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVG 335
           G +   +         +  V  DG L     L SIHR G
Sbjct: 487 GTMNYLEETFPQGQEGTVIVSIDGQLREDYALESIHRAG 525


>gi|296536607|ref|ZP_06898685.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
 gi|296263066|gb|EFH09613.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
          Length = 693

 Score = 36.9 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 23  IIKGNSI--SVLEKLPAKSVDLIFADPPY 49
           ++ G++   + L +LP  S DL+  +PPY
Sbjct: 97  LVLGDAFSHTTLRQLPHTSFDLVITNPPY 125


>gi|262279681|ref|ZP_06057466.1| tRNA(guanine-7)methyltransferase [Acinetobacter calcoaceticus
           RUH2202]
 gi|262260032|gb|EEY78765.1| tRNA(guanine-7)methyltransferase [Acinetobacter calcoaceticus
           RUH2202]
          Length = 246

 Score = 36.9 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 13  QNSIFEWKD-KIIKGNSISVLEKLPAKSVDLI 43
           +  I E K+ +++  ++I VL ++P  S++ +
Sbjct: 114 EAGIAEVKNLRVLDADAIQVLREMPDNSINCV 145


>gi|148270920|ref|YP_001245380.1| methyltransferase type 12 [Thermotoga petrophila RKU-1]
 gi|147736464|gb|ABQ47804.1| Methyltransferase type 12 [Thermotoga petrophila RKU-1]
          Length = 266

 Score = 36.9 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%)

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           +IL +    G  +LD   G GT      K     +GI++  + ++ A KR
Sbjct: 42  KILENFHVRGKKVLDVACGEGTFAVEIAKQGFEVVGIDLSPEMLEFARKR 91


>gi|304314880|ref|YP_003850027.1| DNA modification methylase [Methanothermobacter marburgensis str.
           Marburg]
 gi|302588339|gb|ADL58714.1| predicted DNA modification methylase [Methanothermobacter
           marburgensis str. Marburg]
          Length = 336

 Score = 36.9 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 24/83 (28%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           ++I+ ++  +  +L    VD I  DPPY +  +    R +                    
Sbjct: 238 EVIRSDARDL--RLEGG-VDAIVTDPPYGISASTAGERSEK------------------- 275

Query: 82  DAFTRAWLLACRRVLKPNGTLWV 104
               R +L +    LK +G + +
Sbjct: 276 --LYREFLNSAYSNLKEDGVICM 296


>gi|294813040|ref|ZP_06771683.1| Cyclopropane-fatty-acyl-phospholipid synthase [Streptomyces
           clavuligerus ATCC 27064]
 gi|294325639|gb|EFG07282.1| Cyclopropane-fatty-acyl-phospholipid synthase [Streptomyces
           clavuligerus ATCC 27064]
          Length = 441

 Score = 36.9 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 48/137 (35%), Gaps = 8/137 (5%)

Query: 228 LDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK--RT 284
           LD   G G+     A++      G+ + ++  D A KR+A       +E+ V   +  R 
Sbjct: 213 LDVGCGWGSMALHAAREYGVRVTGVTLSREQADHARKRVADAGLADRVEIRVQDYRDVRD 272

Query: 285 EPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETC 344
            P  A + +     +     L      + A +   G L++        R G+     E  
Sbjct: 273 GPYDAVSSIGMAEHVGAAPYL-EYARQLRALLRPGGRLLNHQIARRPERAGSVYQVDEFI 331

Query: 345 NGWNFWYFEKLGELHSI 361
           +     Y    GEL  +
Sbjct: 332 D----RYVFPDGELSPL 344


>gi|229529469|ref|ZP_04418859.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio cholerae
           12129(1)]
 gi|229333243|gb|EEN98729.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio cholerae
           12129(1)]
          Length = 708

 Score = 36.9 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 20/103 (19%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
           + + ++ + +  L    ++  DLIF DPP         +     +        D  +   
Sbjct: 595 QHQYVQADCLQWLANAQSQY-DLIFIDPP--------TFSNSKRMEQTFDVQRDHVT--- 642

Query: 80  AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                    ++  +R+L+P GT+    +  +       L  L 
Sbjct: 643 --------LMINLKRLLRPEGTIVFSNNKRHFKMDMEALHALG 677


>gi|254392306|ref|ZP_05007490.1| cyclopropane-fatty-acyl-phospholipid synthase [Streptomyces
           clavuligerus ATCC 27064]
 gi|326441417|ref|ZP_08216151.1| cyclopropane-fatty-acyl-phospholipid synthase [Streptomyces
           clavuligerus ATCC 27064]
 gi|197705977|gb|EDY51789.1| cyclopropane-fatty-acyl-phospholipid synthase [Streptomyces
           clavuligerus ATCC 27064]
          Length = 438

 Score = 36.9 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 48/137 (35%), Gaps = 8/137 (5%)

Query: 228 LDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK--RT 284
           LD   G G+     A++      G+ + ++  D A KR+A       +E+ V   +  R 
Sbjct: 210 LDVGCGWGSMALHAAREYGVRVTGVTLSREQADHARKRVADAGLADRVEIRVQDYRDVRD 269

Query: 285 EPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETC 344
            P  A + +     +     L      + A +   G L++        R G+     E  
Sbjct: 270 GPYDAVSSIGMAEHVGAAPYL-EYARQLRALLRPGGRLLNHQIARRPERAGSVYQVDEFI 328

Query: 345 NGWNFWYFEKLGELHSI 361
           +     Y    GEL  +
Sbjct: 329 D----RYVFPDGELSPL 341


>gi|77734463|emb|CAJ26238.1| hypothetical protein [Thermotoga petrophila RKU-1]
          Length = 188

 Score = 36.9 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%)

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           +IL +    G  +LD   G GT      K     +GI++  + ++ A KR
Sbjct: 5   KILENFHVRGKKVLDVACGEGTFAVEIAKQGFEVVGIDLSPEMLEFARKR 54


>gi|325190286|emb|CCA24762.1| trimethylguanosine synthase putative [Albugo laibachii Nc14]
          Length = 753

 Score = 36.9 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 6/58 (10%)

Query: 21  DKI--IKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKF 75
           D+I  I G+++ V+ +L     D+IF  PP+  L  +  +Y     +++      D F
Sbjct: 643 DRIEWICGDALEVISRLQ---ADVIFLSPPWGGLNYSRDVYSLKDMMINESCSGVDLF 697


>gi|320450149|ref|YP_004202245.1| methyltransferase, UbiE/COQ5 family [Thermus scotoductus SA-01]
 gi|320150318|gb|ADW21696.1| methyltransferase, UbiE/COQ5 family [Thermus scotoductus SA-01]
          Length = 256

 Score = 36.9 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 18/111 (16%)

Query: 213 LSRILVSSTKPG-DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD----YIDIATKR-IA 266
           L R+L        +  LD   G G +        R  IGI++  +    +   A +R + 
Sbjct: 32  LKRLLELLEPRSSERALDVATGPGHTALALAPFVREVIGIDLTPEMAMPFAQAARERGLR 91

Query: 267 SVQ---------PLGNIELTVLTGKRT---EPRVAFNLLVERGLIQPGQIL 305
           +V+         P    E  ++T +R     PR+A  L     +++PG  L
Sbjct: 92  NVRFLVGDAESLPFPEGEFHLVTTRRAAHHFPRIARALAEMARVLKPGGRL 142


>gi|317014424|gb|ADU81860.1| cyclopropane fatty acid synthase [Helicobacter pylori Gambia94/24]
          Length = 389

 Score = 36.9 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 50/307 (16%), Positives = 98/307 (31%), Gaps = 29/307 (9%)

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM----LQNLNFWILNDIVWRKSNPMPNF 140
            + W     +V+  + +++  G +   F +         ++   +   I     + + + 
Sbjct: 11  FKQWKNGDYQVVFWDNSVYRNGEHSPKFTLKIHRPLKFSDIKKDMSLTIAEAYMDGVIDI 70

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS---------DWLIPICSG 191
            G   +  H   +  +     K  +               +           WL    S 
Sbjct: 71  EGSMDEVMHSLYLQTNYEHLHKHDSAKAVQKPLKESSNISKHYDLGNDFYSVWLDETLSY 130

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG-TSGAVAKKLRRSFIG 250
           S     KD + LH  Q  + L   +     K G+ +LD   G G  S   A++     +G
Sbjct: 131 SCAYFKKDDDTLHAAQL-QKLDHTLKKLHLKQGEKLLDIGCGWGYLSIKAAQEYGAEVMG 189

Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV-AFNLLVERGLI-QPGQILTNA 308
           I +  +    A KR+  +     + + +L  +  + R+  F+ +V  G+    G+     
Sbjct: 190 ITISSEQYKQANKRVQELGLEDKVTIKLLNYQDLDGRLYRFDKVVSVGMFEHVGKDNLPF 249

Query: 309 QGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
                  V   G +        +H +     G    N W   Y    G L S   LR ++
Sbjct: 250 YFKKVKEVLKRGGMFL------LHSILCCFEGKT--NAWVDKYIFPGGYLPS---LREVM 298

Query: 369 RKELYNC 375
              +  C
Sbjct: 299 -SVMSEC 304


>gi|158341221|ref|YP_001522415.1| hypothetical protein AM1_F0111 [Acaryochloris marina MBIC11017]
 gi|158311462|gb|ABW33073.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 274

 Score = 36.9 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 57/146 (39%), Gaps = 16/146 (10%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD- 225
           +    + +++D++ R  W  P      R R            P+ L+SR++  +      
Sbjct: 5   DQTTKQYSSKDLKQRKTWYSPAAEAYNRTRPH---------YPDTLISRVVELTQLENGS 55

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
            IL+   G GT+      L  S + +E   D+ +IA +   +     N+E+   + +  +
Sbjct: 56  RILEIGCGPGTATVSFANLGFSMLCLEPNPDFYEIARR---NCSHYPNLEIKNTSFEEWK 112

Query: 286 PRV-AFNLLVERGLIQ--PGQILTNA 308
           P    FN ++    I   P ++    
Sbjct: 113 PEAKPFNAVLAATSIHWIPAEVAYPK 138


>gi|42780406|ref|NP_977653.1| hypothetical protein BCE_1332 [Bacillus cereus ATCC 10987]
 gi|42736325|gb|AAS40261.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 229

 Score = 36.9 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 57/165 (34%), Gaps = 24/165 (14%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           S    L  +     +    P  LL  I     +    +LD    SG  GA  K+      
Sbjct: 3   SPKNSLYEEKSGHYYNAVNP-NLLKHIKKEWKE----VLDIGCSSGALGAAIKENGTRVS 57

Query: 250 GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNA 308
           GIE   +  + A +++  V  LG+IE   +  +  +   V F  ++E         L + 
Sbjct: 58  GIEAFPEAAEQAKEKLDHVV-LGDIETMDMPYEEEQFDCVIFGDVLEH--------LFDP 108

Query: 309 ---QGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNG-WNF 349
                 +   +  +G +++     SI  V      +    G W +
Sbjct: 109 WAVIEKVKPYIKQNGVILA-----SIPNVSHISVLAPLLAGNWTY 148


>gi|326794412|ref|YP_004312232.1| RNA methyltransferase, TrmA family [Marinomonas mediterranea MMB-1]
 gi|326545176|gb|ADZ90396.1| RNA methyltransferase, TrmA family [Marinomonas mediterranea MMB-1]
          Length = 435

 Score = 36.9 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 56/147 (38%), Gaps = 14/147 (9%)

Query: 166 FNYDALKAANEDVQMRSDW-LIPICSGSERLRNKDGEKLHP-------TQKPEALLSRIL 217
           +   A +        R+D   I          +    + HP           E ++ + +
Sbjct: 224 WMVWASEVGVNLYWQRADESRISTARKHYYYVDGLNIQFHPQDFIQVNASMNEKMVEQAM 283

Query: 218 VSSTK-PGDIILDPFFGSGT-SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ-PLGNI 274
                   DI+LD F GSG  S  +A++     +G+E  +  ++ A  R+ + +  L N+
Sbjct: 284 RWLAPTKEDIVLDLFCGSGNFSLPLARRAG-EVLGVEGLETMVEFA--RLNAQENDLDNV 340

Query: 275 ELTVLTGKRTEPRVAFNLLVERGLIQP 301
           +       +  P+V  +  V + L+ P
Sbjct: 341 QFIAADLTKPAPKVLKSKKVTKVLLDP 367


>gi|325969983|ref|YP_004246174.1| RNA methyltransferase, TrmA family [Spirochaeta sp. Buddy]
 gi|324025221|gb|ADY11980.1| RNA methyltransferase, TrmA family [Spirochaeta sp. Buddy]
          Length = 390

 Score = 36.9 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 224 GDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIAT 262
            D+++D + G+GT   +A K   +  IGIE  +  ++ A 
Sbjct: 237 DDVVVDAYCGTGTIALIAAKEGAKQVIGIESNEQAVEDAK 276


>gi|257080993|ref|ZP_05575354.1| RNA methyltransferase [Enterococcus faecalis E1Sol]
 gi|256989023|gb|EEU76325.1| RNA methyltransferase [Enterococcus faecalis E1Sol]
          Length = 457

 Score = 36.9 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 12/101 (11%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            +I++D + G GT G    +  +   GIE+ ++ +  A     +   L NIE    T   
Sbjct: 309 NEIVVDAYCGIGTIGLTLAQDAKQIYGIEVIEEAVKDA----ENNAKLNNIENATFTAGL 364

Query: 284 TEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLIS 324
            E  +    LVE G +QP  ++ +           DG L++
Sbjct: 365 AEELLPK--LVENG-LQPDVVVVDPPRKGL-----DGQLVN 397


>gi|240276362|gb|EER39874.1| RNA methylase [Ajellomyces capsulatus H143]
          Length = 454

 Score = 36.9 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 7/64 (10%)

Query: 43  IFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL 102
           I  DPPY +       R    ++ +  D +       ++DA     L    R L P+G +
Sbjct: 274 IICDPPYGV-------REGLKVLGSKDDGYIAPKRPYSFDAMLDDILDFAARTLVPDGRI 326

Query: 103 WVIG 106
            +  
Sbjct: 327 SLWM 330


>gi|119719610|ref|YP_920105.1| putative RNA methylase [Thermofilum pendens Hrk 5]
 gi|119524730|gb|ABL78102.1| putative RNA methylase [Thermofilum pendens Hrk 5]
          Length = 374

 Score = 36.9 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 10/106 (9%)

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
           LDPF G+G     A       +G+++    +  + K ++ +      +L +    +   R
Sbjct: 224 LDPFCGTGGVLIEAALQGMYSVGVDVNYRQVRGSKKNLSVLGLRAVADLVLCDSTKLPFR 283

Query: 288 V----------AFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
                       +  L       PG+IL  A  N+  +V   G + 
Sbjct: 284 AEAFNAAAFDPPYGRLAPTHGRDPGEILRGALRNVVESVKPRGRIA 329


>gi|308510622|ref|XP_003117494.1| hypothetical protein CRE_01860 [Caenorhabditis remanei]
 gi|308242408|gb|EFO86360.1| hypothetical protein CRE_01860 [Caenorhabditis remanei]
          Length = 467

 Score = 36.9 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 43/116 (37%), Gaps = 9/116 (7%)

Query: 213 LSRILVSST-KPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
           + R++     K  D +L+   G G +     ++    + GI + ++ ++   K++     
Sbjct: 237 IDRLIDQLELKAEDHVLEIGCGWGAAAIRAVQRTGCKWTGITISKEQLEWGQKKVVEAGL 296

Query: 271 LGNIELTVLTG---KRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
            G IEL        K    RV    ++E      G+        I   V ADG + 
Sbjct: 297 EGRIELRFQDYRLVKEKFTRVLSVEMIEA----VGEKYLPQYFQIINDVLADGGIA 348


>gi|255101610|ref|ZP_05330587.1| ribosomal protein L11 methyltransferase [Clostridium difficile
           QCD-63q42]
 gi|255307479|ref|ZP_05351650.1| ribosomal protein L11 methyltransferase [Clostridium difficile ATCC
           43255]
          Length = 315

 Score = 36.9 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           +  R L         + D   GSG     A KL  +  + +++ +  + +A +
Sbjct: 166 MCIRELEKYVNKDSKVFDIGCGSGILAIAAAKLGAKEVVAVDLDEVAVKVAKE 218


>gi|170761495|ref|YP_001788270.1| ribosomal protein L11 methyltransferase [Clostridium botulinum A3
           str. Loch Maree]
 gi|226710066|sp|B1KZN5|PRMA_CLOBM RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|169408484|gb|ACA56895.1| ribosomal protein L11 methyltransferase [Clostridium botulinum A3
           str. Loch Maree]
          Length = 312

 Score = 36.9 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 34/117 (29%), Gaps = 3/117 (2%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE-- 210
           +        +     Y      +  + ++  W        E +   D      T   E  
Sbjct: 104 VHKVNEEDWENNWKKYYKPTKVSNKIVIKPIWENYDKKQEEIIVELDPGMAFGTGTHETT 163

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIA 266
            +    L    K    + D   GSG     A KL  +  IG+++    +  + + I 
Sbjct: 164 RMCINALEKYIKEDRTVFDIGCGSGILSIAAAKLGAKHVIGVDLDPVAVKSSKENIK 220


>gi|126641244|ref|YP_001084228.1| tRNA(guanine-7)methyltransferase [Acinetobacter baumannii ATCC
           17978]
          Length = 213

 Score = 36.9 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 23/125 (18%)

Query: 18  EWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           E K+ +++  ++I VL ++P  S++ +            QLY P         D W K  
Sbjct: 86  ELKNLRVLDADAIQVLREMPDNSINCV------------QLYFP---------DPWQKKR 124

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            F+         +    + L+  GT      +         + +    + N      S P
Sbjct: 125 HFKR-RFVIHERMQLVEQKLELGGTFHAATDWEPYAEWMLDVLDNRPNLENLAGKGNSYP 183

Query: 137 MPNFR 141
            P +R
Sbjct: 184 RPEWR 188


>gi|110668320|ref|YP_658131.1| methyltransferase [Haloquadratum walsbyi DSM 16790]
 gi|109626067|emb|CAJ52518.1| probable methyltransferase [Haloquadratum walsbyi DSM 16790]
          Length = 249

 Score = 36.9 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 12/110 (10%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK--KLRRSFIGIEMKQDYIDIATKRIA 266
           P  +   I  +    GD +LD   G+GT    A   +L  +    E+  ++ D+A + ++
Sbjct: 76  PRDIGLMIGHTGVARGDRVLD--AGTGTGVLAAYLGRLGATVTSYEIDPEFADVARENMS 133

Query: 267 SVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATV 316
                  +E+           VAF+ + + G   P  +LT   G+  A +
Sbjct: 134 LAGVTDAVEVRTGDL-----TVAFDTVADEG---PFDVLTLDTGDAPAII 175


>gi|332971587|gb|EGK10537.1| adenine-specific DNA methylase [Kingella kingae ATCC 23330]
          Length = 333

 Score = 36.9 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 9/60 (15%)

Query: 15  SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           SI E K +I + ++  ++ +   +S D+++ DPPYN +   + Y    +LV      WDK
Sbjct: 179 SIQE-KFEIFQQDANQLVRQ---QSADVVYLDPPYNSRQYSRFYHVYETLV-----KWDK 229


>gi|294670650|ref|ZP_06735526.1| hypothetical protein NEIELOOT_02373 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307620|gb|EFE48863.1| hypothetical protein NEIELOOT_02373 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 295

 Score = 36.9 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  + L ++ K G+ +LD   GSG     A KL   S +G+++    I
Sbjct: 143 GTGSHPTTR---LCLQWLDNNLKGGESVLDYGCGSGILTIAALKLGAASAVGVDIDPQAI 199


>gi|293402235|ref|ZP_06646373.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291304342|gb|EFE45593.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 453

 Score = 36.9 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
            + +LD + G GT G  A +  +  IG+E+ +D ++ A  
Sbjct: 305 KETVLDAYCGIGTIGMYAAQFAKQVIGVELNKDAVEDAKN 344


>gi|126700067|ref|YP_001088964.1| ribosomal protein L11 methyltransferase [Clostridium difficile 630]
 gi|115251504|emb|CAJ69337.1| Ribosomal protein L11 methyltransferase (L11 Mtase) [Clostridium
           difficile]
          Length = 315

 Score = 36.9 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           +  R L         + D   GSG     A KL  +  + +++ +  + +A +
Sbjct: 166 MCIRELEKYVNKDSKVFDIGCGSGILAIAAAKLGAKEVVAVDLDEVAVKVAKE 218


>gi|94500186|ref|ZP_01306720.1| hypothetical protein RED65_13662 [Oceanobacter sp. RED65]
 gi|94427759|gb|EAT12735.1| hypothetical protein RED65_13662 [Oceanobacter sp. RED65]
          Length = 217

 Score = 36.9 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 43/109 (39%), Gaps = 6/109 (5%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSF-IGIEMKQDYI--DIATKRIASVQPLGNIELTVLTGKR 283
           +LD   GSG     AKK   +  I  ++  D +    A  ++ +++ + + +L  L    
Sbjct: 84  VLDFGAGSGIVAIAAKKAGATSVIACDIDPDALISCQANAQLNNIELITSDDLFALDKHS 143

Query: 284 TEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIH 332
            +  +A ++L +R  +       +    +   + AD  +   +     H
Sbjct: 144 FDCLIAADVLYDRSNLSFLDQFFDYAPEV---LLADSRIKDFSHTHYTH 189


>gi|309364642|emb|CAP24970.2| hypothetical protein CBG_04220 [Caenorhabditis briggsae AF16]
          Length = 454

 Score = 36.9 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 6/72 (8%)

Query: 37  AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD---AFTRAW-LLAC 92
               D+I ADPPY ++   +    +        + + ++   E YD   AF     L A 
Sbjct: 311 NAKFDVIVADPPYGVREKARKTVKNKK--SDANEDYIQYQQKEDYDLEAAFCDLLNLAAM 368

Query: 93  RRVLKPNGTLWV 104
             V+    + W 
Sbjct: 369 ALVMNGRVSFWY 380


>gi|295105028|emb|CBL02572.1| 23S rRNA m(5)U-1939 methyltransferase [Faecalibacterium prausnitzii
           SL3/3]
          Length = 457

 Score = 36.9 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT---KRIASV 268
           P D +LD + G GT G       R  IG+E+  + I+ A     R+   
Sbjct: 306 PDDTLLDLYCGMGTIGLSMAGQCRELIGVEIVPEAIESAKANAARMGEA 354


>gi|282892096|ref|ZP_06300571.1| hypothetical protein pah_c207o022 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497991|gb|EFB40335.1| hypothetical protein pah_c207o022 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 271

 Score = 36.9 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
           ILD   GSG     A  +    + GI++  + ++ A + +   +  G+I  ++  
Sbjct: 137 ILDVGSGSGVLSLAAAIMGAKIVWGIDIDPEAVEHAKENLLLNELEGDITFSIEP 191


>gi|227501269|ref|ZP_03931318.1| site-specific DNA-methyltransferase (adenine-specific)
           [Anaerococcus tetradius ATCC 35098]
 gi|227216502|gb|EEI81908.1| site-specific DNA-methyltransferase (adenine-specific)
           [Anaerococcus tetradius ATCC 35098]
          Length = 376

 Score = 36.9 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 51/134 (38%), Gaps = 3/134 (2%)

Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
           N IV  ++     F  R  Q   E  I  S   K K +TF   A +   E +  +    I
Sbjct: 90  NFIVNARTYKSKLFSLRSIQAITEKAIIDSMKKKYKLHTFPKSAERVGIEVMLNKDVATI 149

Query: 187 PICSGSERLRNKDGEKLHP-TQKPEALLSRILVSSTKPGDIIL-DPFFGSGTSGAVAKKL 244
            I +  + L  +   +        E L + ++  S    D  L D F GSGT    A + 
Sbjct: 150 AIDTSGDGLHKRGYREDSVKAPLRENLAAALVDLSFYTEDRFLVDAFCGSGTILIEAARK 209

Query: 245 RRS-FIGIEMKQDY 257
            R+   GI+   D+
Sbjct: 210 ARNIAPGIDRDFDF 223


>gi|160944108|ref|ZP_02091338.1| hypothetical protein FAEPRAM212_01610 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444784|gb|EDP21788.1| hypothetical protein FAEPRAM212_01610 [Faecalibacterium prausnitzii
           M21/2]
          Length = 458

 Score = 36.9 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT---KRIASV 268
           P D +LD + G GT G       R  IG+E+  + I+ A     R+   
Sbjct: 306 PDDTLLDLYCGMGTIGLSMAGQCRELIGVEIVPEAIESAKANAARMGEA 354


>gi|148653560|ref|YP_001280653.1| tRNA (guanine-N(7)-)-methyltransferase [Psychrobacter sp. PRwf-1]
 gi|148572644|gb|ABQ94703.1| tRNA (guanine-N(7)-)-methyltransferase [Psychrobacter sp. PRwf-1]
          Length = 266

 Score = 36.9 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 22/120 (18%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
           KII G++I+++++LP   +D I            QLY P         D W K   ++  
Sbjct: 145 KIINGDAIALMQQLPENHIDRI------------QLYFP---------DPWQKKRHYKR- 182

Query: 82  DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
              +   +    RVLK  G       + +       + +    + N        P P+FR
Sbjct: 183 RFVSPKRMQIVTRVLKTGGWFHTATDWEHYAFWMLEVLDNFEGLTNTAGEGNFTPRPDFR 242


>gi|37521087|ref|NP_924464.1| hypothetical protein glr1518 [Gloeobacter violaceus PCC 7421]
 gi|35212083|dbj|BAC89459.1| glr1518 [Gloeobacter violaceus PCC 7421]
          Length = 440

 Score = 36.9 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL--RRSFIGIEMKQDYIDI 260
           LH    P  L ++ +VS       ILD   GSG +     +       +GI++ +  + +
Sbjct: 38  LHNLMTPYYLRNQRVVSGAGKR--ILDAGCGSGFTSLALAQANPGARIVGIDLSERSVAV 95

Query: 261 ATKRIASVQPLGNIELTVLTGKR 283
           A +R+A      + E   L  +R
Sbjct: 96  ARERLA-FHGFKSAEFHALPIER 117


>gi|322513936|ref|ZP_08067012.1| N6-adenine-specific DNA methytransferase [Actinobacillus ureae ATCC
           25976]
 gi|322120231|gb|EFX92186.1| N6-adenine-specific DNA methytransferase [Actinobacillus ureae ATCC
           25976]
          Length = 715

 Score = 36.9 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 20/91 (21%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++ + + +  L +   +  +LIF DPP              S    + DSWD       
Sbjct: 602 HRLFQADCLQWLAECR-ERFELIFVDPP------------TFSNSKRMEDSWDVQRDHI- 647

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
                   +   +R+L  +GT+    +    
Sbjct: 648 ------KLMTQLKRILTADGTIVFSNNKRGF 672


>gi|261839930|gb|ACX99695.1| type II adenine specific DNA methyltransferase [Helicobacter pylori
           52]
          Length = 329

 Score = 36.9 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 52/130 (40%), Gaps = 12/130 (9%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
           +  L +      +    +++ + ++  ++ K+     D+++ DPPYN +  G  Y   ++
Sbjct: 171 QKELLLKGADFDLSSNANEVYQQDASELIGKISG---DILYLDPPYNARQYGANYHLLNT 227

Query: 64  LVDAVTDSWDKFSSFEAYDA--FT--RAWLLACRRVLKPNGTLWVIGSYHN-----IFRI 114
           +V     +    +   +Y    F      L A   ++K     ++  SY+N        I
Sbjct: 228 IVAYTPFAPKGKTGLPSYQKSSFCSRAKILNAFENLIKKARFKYIFLSYNNEGLMGEIEI 287

Query: 115 GTMLQNLNFW 124
           G +L+    +
Sbjct: 288 GNILKKYGAY 297


>gi|254416165|ref|ZP_05029920.1| hypothetical protein MC7420_7587 [Microcoleus chthonoplastes PCC
           7420]
 gi|196177098|gb|EDX72107.1| hypothetical protein MC7420_7587 [Microcoleus chthonoplastes PCC
           7420]
          Length = 407

 Score = 36.9 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
             L++ ++   + P   ILDPF G+ T+G VA +       +++ 
Sbjct: 33  VKLVTEMINKIS-PESFILDPFSGTATTGLVAAEQGLQAHCLDIN 76


>gi|168179388|ref|ZP_02614052.1| ribosomal protein L11 methyltransferase [Clostridium botulinum NCTC
           2916]
 gi|182669588|gb|EDT81564.1| ribosomal protein L11 methyltransferase [Clostridium botulinum NCTC
           2916]
          Length = 312

 Score = 36.9 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 34/117 (29%), Gaps = 3/117 (2%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE-- 210
           +        +     Y      +  + ++  W        E +   D      T   E  
Sbjct: 104 VHKVNEEDWENNWKKYYKPTKVSNKIVIKPIWENYDKKQEEIIVELDPGMAFGTGTHETT 163

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIA 266
            +    L    K    + D   GSG     A KL  +  IG+++    +  + + I 
Sbjct: 164 RMCINALEKYIKEDRTVFDIGCGSGILSIAAAKLGAKHVIGVDLDPVAVKSSKENIK 220


>gi|121611668|ref|YP_999475.1| hypothetical protein Veis_4764 [Verminephrobacter eiseniae EF01-2]
 gi|121556308|gb|ABM60457.1| conserved hypothetical protein 95 [Verminephrobacter eiseniae
           EF01-2]
          Length = 318

 Score = 36.9 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
           +I +G+ I+ L +    S+DL+  DPP++  L
Sbjct: 227 QIRRGDGIAALRQAAPASIDLVLLDPPFDSAL 258


>gi|254976044|ref|ZP_05272516.1| ribosomal protein L11 methyltransferase [Clostridium difficile
           QCD-66c26]
 gi|255093432|ref|ZP_05322910.1| ribosomal protein L11 methyltransferase [Clostridium difficile CIP
           107932]
 gi|255315177|ref|ZP_05356760.1| ribosomal protein L11 methyltransferase [Clostridium difficile
           QCD-76w55]
 gi|255517846|ref|ZP_05385522.1| ribosomal protein L11 methyltransferase [Clostridium difficile
           QCD-97b34]
 gi|255650962|ref|ZP_05397864.1| ribosomal protein L11 methyltransferase [Clostridium difficile
           QCD-37x79]
 gi|260684031|ref|YP_003215316.1| ribosomal protein L11 methyltransferase [Clostridium difficile
           CD196]
 gi|260687691|ref|YP_003218825.1| ribosomal protein L11 methyltransferase [Clostridium difficile
           R20291]
 gi|306520840|ref|ZP_07407187.1| ribosomal protein L11 methyltransferase [Clostridium difficile
           QCD-32g58]
 gi|260210194|emb|CBA64402.1| putative ribosomal protein L11 methyltransferase [Clostridium
           difficile CD196]
 gi|260213708|emb|CBE05590.1| putative ribosomal protein L11 methyltransferase [Clostridium
           difficile R20291]
          Length = 315

 Score = 36.9 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           +  R L         + D   GSG     A KL  +  + +++ +  + +A +
Sbjct: 166 MCIRELEKYVNKDSKVFDIGCGSGILAIAAAKLGAKEVVAVDLDEVAVKVAKE 218


>gi|323477540|gb|ADX82778.1| hypothetical protein SiH_1430 [Sulfolobus islandicus HVE10/4]
          Length = 312

 Score = 36.9 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           KP  L+  I+   +     ++DPF G+GT    A K     + +++      +A
Sbjct: 9   KPLKLIDEIM---SDIDGTVIDPFGGAGTIVLSALKHGNKGVYLDINPYAWLVA 59


>gi|319940799|ref|ZP_08015138.1| hypothetical protein HMPREF9464_00357 [Sutterella wadsworthensis
           3_1_45B]
 gi|319805681|gb|EFW02462.1| hypothetical protein HMPREF9464_00357 [Sutterella wadsworthensis
           3_1_45B]
          Length = 219

 Score = 36.9 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
           ++ +G++   LE   A   D+IF DPPY L L
Sbjct: 101 RVHQGDAFQFLEG-AASYYDVIFIDPPYALNL 131


>gi|297180021|gb|ADI16246.1| N6-adenine-specific methylase [uncultured bacterium HF0010_16H03]
          Length = 186

 Score = 36.9 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 32/52 (61%), Gaps = 3/52 (5%)

Query: 1   MSQKN--SLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN 50
           +++KN  +L++N  + ++ + K KI   ++ + ++      +DLIF DPP+N
Sbjct: 76  LNKKNYSALSLNLKKLNVKD-KSKIFFKDAYTWIKHYDLSEIDLIFLDPPFN 126


>gi|255656431|ref|ZP_05401840.1| ribosomal protein L11 methyltransferase [Clostridium difficile
           QCD-23m63]
 gi|296450122|ref|ZP_06891883.1| ribosomal protein L11 methyltransferase [Clostridium difficile
           NAP08]
 gi|296878503|ref|ZP_06902508.1| ribosomal protein L11 methyltransferase [Clostridium difficile
           NAP07]
 gi|296260885|gb|EFH07719.1| ribosomal protein L11 methyltransferase [Clostridium difficile
           NAP08]
 gi|296430310|gb|EFH16152.1| ribosomal protein L11 methyltransferase [Clostridium difficile
           NAP07]
          Length = 315

 Score = 36.9 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           +  R L         + D   GSG     A KL  +  + +++ +  + +A +
Sbjct: 166 MCIRELEKYVNKDSKVFDIGCGSGILAIAAAKLGAKEVVAVDLDEVAVKVAKE 218


>gi|88603015|ref|YP_503193.1| hypothetical protein Mhun_1753 [Methanospirillum hungatei JF-1]
 gi|88188477|gb|ABD41474.1| protein of unknown function DUF1156 [Methanospirillum hungatei
           JF-1]
          Length = 960

 Score = 36.9 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
            DPF G G+    A++L       ++    + + TK +  + P       V    R   +
Sbjct: 142 YDPFCGGGSIPLEAQRLGLKAYASDLNPVAV-LITKALIEIPPKFAGMPPVNPESRKNKK 200

Query: 288 VA 289
           ++
Sbjct: 201 IS 202


>gi|325690901|gb|EGD32902.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK115]
          Length = 464

 Score = 36.9 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 86/263 (32%), Gaps = 16/263 (6%)

Query: 50  NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
           N QL    +R +   +  + D + +    +    FTR  L                    
Sbjct: 151 NGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKPYDE--------QE 202

Query: 110 NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
               I  ++     +    +V   +     FR  +  +       A  +        N +
Sbjct: 203 KTGLIRNLVVRRGHYSGEIMVILVTTRPKIFRVEQLIDRLTEAFPAIKTIIQNINDQNTN 262

Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGDIIL 228
           A+      V    D+++    G+    +        TQ  E L    +  +  +  D+++
Sbjct: 263 AIFGKEWRVLYGQDYIMDQMLGNNFQISGPAFYQVNTQMAEKLYQTAIDFADLREDDVVI 322

Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
           D + G GT G    K  +   G+E+  + ++ + K  A++  + N      T +      
Sbjct: 323 DAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKN-ATLNGITNAHYVCDTAEN----- 376

Query: 289 AFNLLVERGLIQPGQILTNAQGN 311
           A    ++ G IQP  IL +    
Sbjct: 377 AMKTWLKEG-IQPTAILVDPPRK 398


>gi|256810678|ref|YP_003128047.1| protein of unknown function Met10 [Methanocaldococcus fervens AG86]
 gi|256793878|gb|ACV24547.1| protein of unknown function Met10 [Methanocaldococcus fervens AG86]
          Length = 385

 Score = 36.9 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKL--PAKSVDLIFADPP 48
           N   N+I + K + I+GN+  V+++     +  D++  DPP
Sbjct: 253 NMELNNIPKDKYEFIEGNAFEVMKEFIEDGEKFDVVVLDPP 293


>gi|148380909|ref|YP_001255450.1| ribosomal protein L11 methyltransferase [Clostridium botulinum A
           str. ATCC 3502]
 gi|153933190|ref|YP_001385217.1| ribosomal protein L11 methyltransferase [Clostridium botulinum A
           str. ATCC 19397]
 gi|153935106|ref|YP_001388686.1| ribosomal protein L11 methyltransferase [Clostridium botulinum A
           str. Hall]
 gi|226950383|ref|YP_002805474.1| ribosomal protein L11 methyltransferase [Clostridium botulinum A2
           str. Kyoto]
 gi|166223407|sp|A7FXL3|PRMA_CLOB1 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|166223408|sp|A5I638|PRMA_CLOBH RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|254783051|sp|C1FVT8|PRMA_CLOBJ RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|148290393|emb|CAL84520.1| ribosomal protein L11 methyltransferase [Clostridium botulinum A
           str. ATCC 3502]
 gi|152929234|gb|ABS34734.1| ribosomal protein L11 methyltransferase [Clostridium botulinum A
           str. ATCC 19397]
 gi|152931020|gb|ABS36519.1| ribosomal protein L11 methyltransferase [Clostridium botulinum A
           str. Hall]
 gi|226840767|gb|ACO83433.1| ribosomal protein L11 methyltransferase [Clostridium botulinum A2
           str. Kyoto]
          Length = 312

 Score = 36.9 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 34/117 (29%), Gaps = 3/117 (2%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE-- 210
           +        +     Y      +  + ++  W        E +   D      T   E  
Sbjct: 104 VHKVNEEDWENNWKKYYKPTKVSNKIVIKPIWENYDKKQEEIIVELDPGMAFGTGTHETT 163

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIA 266
            +    L    K    + D   GSG     A KL  +  IG+++    +  + + I 
Sbjct: 164 RMCINALEKYIKEDRTVFDIGCGSGILSIAAAKLGAKHVIGVDLDPVAVKSSKENIK 220


>gi|310820054|ref|YP_003952412.1| ArsR family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|309393126|gb|ADO70585.1| Transcriptional regulator, ArsR family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 298

 Score = 36.9 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 16/42 (38%)

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           P   + D   GSGT      +  R    I+   + +  A +R
Sbjct: 134 PPLDVADFGCGSGTLSVAIARWARRVWAIDQNPEALAQAKER 175


>gi|297380391|gb|ADI35278.1| Modification methylase [Helicobacter pylori v225d]
          Length = 329

 Score = 36.9 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 52/130 (40%), Gaps = 12/130 (9%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
           +  L +      +    +++ + ++  ++EK+     D+++ DPPYN +  G  Y   ++
Sbjct: 171 QKELILKGADFDLSSNANEVYQQDASELIEKISG---DILYLDPPYNARQYGANYHLLNT 227

Query: 64  LVDAVTDSWDKFSSFEAYDA--FT-RAWLLACRRVLKPNGTL-WVIGSYHNIF-----RI 114
           +      +    +   +Y    F  RA +L     L       ++  SY+N        I
Sbjct: 228 IAAYTPFAPKGKTGLPSYQKSSFCSRAKILNIFENLIKTARFKYIFLSYNNEGLMSETEI 287

Query: 115 GTMLQNLNFW 124
           G +L+    +
Sbjct: 288 GNILKKYGAY 297


>gi|225442369|ref|XP_002276511.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297743126|emb|CBI35993.3| unnamed protein product [Vitis vinifera]
          Length = 570

 Score = 36.9 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 23/60 (38%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           H  +    L+           +I+LD F G+GT G    +  R   G E+    +  A +
Sbjct: 396 HQAEVLYKLIEDCAGLRGDGSEIVLDLFCGTGTIGLTLSRRVRHVYGYEVVAQAVSDARR 455


>gi|254168357|ref|ZP_04875202.1| Putative RNA methylase family UPF0020 [Aciduliprofundum boonei
           T469]
 gi|289595781|ref|YP_003482477.1| putative RNA methylase [Aciduliprofundum boonei T469]
 gi|197622638|gb|EDY35208.1| Putative RNA methylase family UPF0020 [Aciduliprofundum boonei
           T469]
 gi|289533568|gb|ADD07915.1| putative RNA methylase [Aciduliprofundum boonei T469]
          Length = 310

 Score = 36.9 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 204 HPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           +P      L   ++ ++  K G  ILDPF G+G+       +     G ++ +  +  + 
Sbjct: 149 YPITMHPRLARAMINLARVKKGARILDPFCGTGSILIEGALIGMKMYGSDIDERMLKASQ 208

Query: 263 KRIA 266
             + 
Sbjct: 209 TNLK 212


>gi|119713215|gb|ABL97282.1| hypothetical protein ALOHA_HF1005C07.0004 [uncultured marine
           bacterium HF10_05C07]
          Length = 243

 Score = 36.9 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           KI   NS+ V+ ++  KS+  I+ DP + +       +  H L  ++ D  DK  +
Sbjct: 144 KIKNKNSLDVMGEIENKSI--IYLDPMFGVDNKAFAKKEMHFLRKSLNDDPDKVIN 197


>gi|115378884|ref|ZP_01466022.1| SAM-dependent methyltransferase [Stigmatella aurantiaca DW4/3-1]
 gi|115364123|gb|EAU63220.1| SAM-dependent methyltransferase [Stigmatella aurantiaca DW4/3-1]
          Length = 276

 Score = 36.9 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 16/42 (38%)

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           P   + D   GSGT      +  R    I+   + +  A +R
Sbjct: 112 PPLDVADFGCGSGTLSVAIARWARRVWAIDQNPEALAQAKER 153


>gi|284052537|ref|ZP_06382747.1| modification methylase NspV [Arthrospira platensis str. Paraca]
          Length = 489

 Score = 36.9 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 207 QKPEALLSRI---LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF---IGIEMKQDYIDI 260
           Q P  L  RI   L S     D+I++P  G G     + +  +S    +G+E+  DYI  
Sbjct: 16  QTPIELAERICQKLSSLGVNPDLIVEPTCGVGNFIVASIQQFKSAAKIVGLEINPDYIKA 75

Query: 261 ATK 263
           A  
Sbjct: 76  AKN 78


>gi|153940913|ref|YP_001392234.1| ribosomal protein L11 methyltransferase [Clostridium botulinum F
           str. Langeland]
 gi|170754529|ref|YP_001782590.1| ribosomal protein L11 methyltransferase [Clostridium botulinum B1
           str. Okra]
 gi|166223409|sp|A7GHH4|PRMA_CLOBL RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|226710065|sp|B1ILM1|PRMA_CLOBK RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|152936809|gb|ABS42307.1| ribosomal protein L11 methyltransferase [Clostridium botulinum F
           str. Langeland]
 gi|169119741|gb|ACA43577.1| ribosomal protein L11 methyltransferase [Clostridium botulinum B1
           str. Okra]
 gi|295320232|gb|ADG00610.1| ribosomal protein L11 methyltransferase [Clostridium botulinum F
           str. 230613]
          Length = 312

 Score = 36.9 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 34/117 (29%), Gaps = 3/117 (2%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE-- 210
           +        +     Y      +  + ++  W        E +   D      T   E  
Sbjct: 104 VHEVNEEDWENNWKKYYKPTKVSNKIVIKPIWENYDKKQEEIIVELDPGMAFGTGTHETT 163

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIA 266
            +    L    K    + D   GSG     A KL  +  IG+++    +  + + I 
Sbjct: 164 RMCINALEKYIKEDRTVFDIGCGSGILSIAAAKLGAKHVIGVDLDPVAVKSSKENIK 220


>gi|313835716|gb|EFS73430.1| conserved hypothetical protein [Propionibacterium acnes HL037PA2]
 gi|314928389|gb|EFS92220.1| conserved hypothetical protein [Propionibacterium acnes HL044PA1]
 gi|314970194|gb|EFT14292.1| conserved hypothetical protein [Propionibacterium acnes HL037PA3]
 gi|328908031|gb|EGG27790.1| hypothetical protein PA08_0017 [Propionibacterium sp. P08]
          Length = 337

 Score = 36.9 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 12/76 (15%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID---------IATKRIAS---VQPLGNI 274
           I DP  G GT+   A +   +  G+E     ++         +  KRI       P+   
Sbjct: 139 IFDPLAGRGTTLECAWRAGHNGFGVEQDAKAVEALAAHITTWLRRKRIKHSCGTHPVRRD 198

Query: 275 ELTVLTGKRTEPRVAF 290
             ++      E R+  
Sbjct: 199 GRSLGKRFDAEARLPK 214


>gi|42783439|ref|NP_980686.1| ribosomal protein L11 methyltransferase [Bacillus cereus ATCC
           10987]
 gi|60390503|sp|Q730M3|PRMA_BACC1 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|42739368|gb|AAS43294.1| ribosomal protein L11 methyltransferase [Bacillus cereus ATCC
           10987]
          Length = 312

 Score = 36.9 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 55/173 (31%), Gaps = 26/173 (15%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-------------HPTQKPEALL 213
           ++             SD    + +  E   +   EK+             HPT     + 
Sbjct: 109 DWATAWKKYYHPVQISDTFTIVPTWEEYTPSSPEEKIIELDPGMAFGTGTHPTTT---MC 165

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATK--RIASVQP 270
            R L  + + GD I+D   GSG     A KL  S +   ++    ++ A    R+     
Sbjct: 166 IRALEKTVQQGDTIIDVGTGSGVLSIAAAKLGASSVQAYDLDPVAVESAEMNVRLNKTDD 225

Query: 271 LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
           + ++    L      P      L+   L+    +L       +A V   G L 
Sbjct: 226 IVSVGQNSLLEGIEGPV----DLIVANLLAEIILLFPED---AARVVKSGGLF 271


>gi|317163463|gb|ADV07004.1| ribosomal protein L11 methyltransferase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 311

 Score = 36.9 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  + L +  K G+ +LD   GSG     A KL   S +G+++ +  +
Sbjct: 159 GTGSHPTTR---LCLKWLDTQLKNGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAV 215


>gi|297157652|gb|ADI07364.1| hypothetical protein SBI_04243 [Streptomyces bingchenggensis BCW-1]
          Length = 217

 Score = 36.9 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 8/114 (7%)

Query: 214 SRILVSSTKP-GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
           +R+L S   P    +LD   G+G+   +         G+++    +D A  ++ +     
Sbjct: 36  ARLLESWMPPAPARVLDVGCGTGSLTHLLAAAGHHVTGVDLSPRMVDQARAKLTAA---- 91

Query: 273 NIELTVLTGKRTEPRVA---FNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
            +  T L G   +P      F+ L+ R L+        A    +A +   GTLI
Sbjct: 92  GLTGTFLVGDAAQPPTGEDRFDALLCRHLLWTLPDPHAALRQWTARLRPGGTLI 145


>gi|293397759|ref|ZP_06641965.1| 50S ribosomal protein L11 methyltransferase [Neisseria gonorrhoeae
           F62]
 gi|291611705|gb|EFF40774.1| 50S ribosomal protein L11 methyltransferase [Neisseria gonorrhoeae
           F62]
          Length = 311

 Score = 36.9 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  + L +  K G+ +LD   GSG     A KL   S +G+++ +  +
Sbjct: 159 GTGSHPTTR---LCLKWLDTQLKNGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAV 215


>gi|268685806|ref|ZP_06152668.1| ribosomal protein L11 methyltransferase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268626090|gb|EEZ58490.1| ribosomal protein L11 methyltransferase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 311

 Score = 36.9 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  + L +  K G+ +LD   GSG     A KL   S +G+++ +  +
Sbjct: 159 GTGSHPTTR---LCLKWLDTQLKNGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAV 215


>gi|255319444|ref|ZP_05360658.1| methylase [Acinetobacter radioresistens SK82]
 gi|262378532|ref|ZP_06071689.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|255303384|gb|EET82587.1| methylase [Acinetobacter radioresistens SK82]
 gi|262299817|gb|EEY87729.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 734

 Score = 36.9 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
           K +  +N       + + +    +    L++   +  D+IF DPP
Sbjct: 605 KENFVLNGLTVDHPDQQHQFFASDCFEWLKE-GHEQYDMIFIDPP 648


>gi|240949972|ref|ZP_04754288.1| 23S rRNA m(2)G2445 methyltransferase [Actinobacillus minor NM305]
 gi|240295572|gb|EER46298.1| 23S rRNA m(2)G2445 methyltransferase [Actinobacillus minor NM305]
          Length = 712

 Score = 36.9 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 20/102 (19%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++ + + +  L +   +  +LIF DPP              S    + DSWD       
Sbjct: 600 HRLFQADCLQWLAECR-ERFELIFVDPP------------TFSNSKRMEDSWDVQRDHI- 645

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                   +   +R+L   GT+    +          L  L 
Sbjct: 646 ------KLMKQLKRILTNEGTIVFSNNKRGFKMDFDGLAELG 681


>gi|239998173|ref|ZP_04718097.1| ribosomal protein L11 methyltransferase [Neisseria gonorrhoeae
           35/02]
 gi|240127432|ref|ZP_04740093.1| ribosomal protein L11 methyltransferase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268594025|ref|ZP_06128192.1| ribosomal protein L11 methyltransferase [Neisseria gonorrhoeae
           35/02]
 gi|268547414|gb|EEZ42832.1| ribosomal protein L11 methyltransferase [Neisseria gonorrhoeae
           35/02]
          Length = 295

 Score = 36.9 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  + L +  K G+ +LD   GSG     A KL   S +G+++ +  +
Sbjct: 143 GTGSHPTTR---LCLKWLDTQLKNGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAV 199


>gi|229889504|sp|Q7VP04|RLML_HAEDU RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
          Length = 712

 Score = 36.9 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 41/140 (29%), Gaps = 25/140 (17%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N +     ++ + + +  L +   +  +LIF DPP              S    + DSWD
Sbjct: 592 NGLKSRNHRLFQADCLQWLAECR-ERFELIFVDPP------------TFSNSKRMEDSWD 638

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                          +   +R+L  +G +    +       G  +       L  +    
Sbjct: 639 VQRDHI-------KLMTQLKRILTSDGMIVFSNNKR-----GFKMDFNGLTALGLVAENI 686

Query: 134 SNPMPNFRGRRFQNAHETLI 153
           S         R  + H   I
Sbjct: 687 SYKTLPLDFERDPHIHNCWI 706


>gi|254492950|ref|ZP_05106121.1| ribosomal protein L11 methyltransferase [Neisseria gonorrhoeae
           1291]
 gi|226511990|gb|EEH61335.1| ribosomal protein L11 methyltransferase [Neisseria gonorrhoeae
           1291]
          Length = 295

 Score = 36.9 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  + L +  K G+ +LD   GSG     A KL   S +G+++ +  +
Sbjct: 143 GTGSHPTTR---LCLKWLDTQLKNGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAV 199


>gi|255280074|ref|ZP_05344629.1| Met-10+ like-protein [Bryantella formatexigens DSM 14469]
 gi|255269165|gb|EET62370.1| Met-10+ like-protein [Bryantella formatexigens DSM 14469]
          Length = 494

 Score = 36.9 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 12/65 (18%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-------FIGIEMKQDYI 258
                AL+  ++    + G  +LDPF G GT         R          G+++ ++ +
Sbjct: 328 APVNAALIMYMVKEYLREGARVLDPFCGVGTMLI-----ERRQVVTPGTLYGVDILEEAV 382

Query: 259 DIATK 263
             A +
Sbjct: 383 QKARR 387


>gi|159041194|ref|YP_001540446.1| putative RNA methylase [Caldivirga maquilingensis IC-167]
 gi|157920029|gb|ABW01456.1| putative RNA methylase [Caldivirga maquilingensis IC-167]
          Length = 247

 Score = 36.9 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
           ++  +      ++DPF G GT   +A++L    IG ++
Sbjct: 103 MINLTGVIDGPLIDPFAGVGTIPRIAEELGIRAIGCDV 140


>gi|59800510|ref|YP_207222.1| ribosomal protein L11 methyltransferase [Neisseria gonorrhoeae FA
           1090]
 gi|81311265|sp|Q5FAH7|PRMA_NEIG1 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|59717405|gb|AAW88810.1| putative ribosomal protein L11 methyltransferase [Neisseria
           gonorrhoeae FA 1090]
          Length = 295

 Score = 36.9 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           G   HPT +   L  + L +  K G+ +LD   GSG     A KL   S +G+++ +  +
Sbjct: 143 GTGSHPTTR---LCLKWLDTQLKNGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAV 199


>gi|71413540|ref|XP_808905.1| methyltransferase [Trypanosoma cruzi strain CL Brener]
 gi|70873203|gb|EAN87054.1| methyltransferase, putative [Trypanosoma cruzi]
          Length = 586

 Score = 36.9 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 20/46 (43%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           PE     + ++  + G+ + DPF G+G+    A       +G +  
Sbjct: 228 PEPAFVMVHLAHVRRGNYVFDPFCGTGSILIAAAHYGAVTLGADAD 273


>gi|325200488|gb|ADY95943.1| type I restriction-modification system, M subunit [Neisseria
           meningitidis H44/76]
          Length = 513

 Score = 36.9 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 6/97 (6%)

Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
              N  + +  D    + S       K G +    Q    L++R+ V   +  + I DP 
Sbjct: 166 NFENHHIDLFGDAYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNKIYDPA 225

Query: 232 FGSGTSGAVAKK------LRRSFIGIEMKQDYIDIAT 262
            GSG+    AKK      +   F G E+     ++A 
Sbjct: 226 CGSGSLLLQAKKQFDEHIIEEGFFGQEINHTTYNLAR 262


>gi|323351031|ref|ZP_08086688.1| rRNA methylase [Streptococcus sanguinis VMC66]
 gi|322122755|gb|EFX94464.1| rRNA methylase [Streptococcus sanguinis VMC66]
          Length = 183

 Score = 36.9 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 24/61 (39%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           +P  +    L       D ++D   G+G       +L R     ++++  ++   +R+A 
Sbjct: 3   RPLQMAHAFLAEVMTKEDTVVDATMGNGHDTLFLAQLARKVYAFDIQEQAVEKTRQRLAE 62

Query: 268 V 268
            
Sbjct: 63  A 63


>gi|240126797|ref|ZP_04739683.1| hypothetical protein NgonSK_11395 [Neisseria gonorrhoeae SK-92-679]
 gi|268685374|ref|ZP_06152236.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|295788816|ref|YP_003600431.1| putative DNA modification methylase [Neisseria gonorrhoeae]
 gi|268625658|gb|EEZ58058.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|294769557|gb|ADF36632.1| putative DNA modification methylase [Neisseria gonorrhoeae]
 gi|317165602|gb|ADV09141.1| putative DNA modification methylase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 298

 Score = 36.9 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 24/46 (52%)

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           ++   + S   P  +  DP  GSGTS  VA+++   F G ++ Q Y
Sbjct: 28  IIRDFVESYLAPEGLFADPSIGSGTSSDVAEEMGIRFKGTDLHQGY 73


>gi|168177986|ref|ZP_02612650.1| cyclopropane-fatty-acyl-phospholipid synthase [Clostridium
           botulinum NCTC 2916]
 gi|182671169|gb|EDT83143.1| cyclopropane-fatty-acyl-phospholipid synthase [Clostridium
           botulinum NCTC 2916]
          Length = 392

 Score = 36.9 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 61/308 (19%), Positives = 95/308 (30%), Gaps = 41/308 (13%)

Query: 83  AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
            F ++       V   +GT    G     FRI          IL D          N   
Sbjct: 8   KFLKSIFSDTFEVKFWDGTTEKFGEGDIKFRILINDHLSKSDILKDPFLTFGEAYMNKVI 67

Query: 143 RRFQNAHETL---------IWASPSPKAKGYTFNYDALKAANEDVQMRSD--------WL 185
               N  E +                  K Y     ++K + +D+    D        WL
Sbjct: 68  DFKGNVQEVIESVYRNKDSFLHKACLFEKLYKIVPHSIKNSKKDIHHHYDLGNDFYKLWL 127

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST-KPGDIILDPFFGSGTSGA-VAKK 243
               + S        + L+  Q  +  +  IL      PG  +LD   G G      AKK
Sbjct: 128 DKTMNYSCSYFKSKDDSLYQAQLNK--VDYILKKLNLHPGQKLLDIGCGWGDLIITAAKK 185

Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERG-----L 298
                +GI +  +  +   +RI        +E+ VL          +  L++ G     +
Sbjct: 186 YGVKSLGITLSNEQFNRVNERIKENHLENQVEVRVLD---------YRELLKTGEKFHRV 236

Query: 299 IQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNG--WNFWYFEKLG 356
           I  G I    + NI   + A   L+    +  +H + A+      C G  W   Y    G
Sbjct: 237 ISVGMIEHVGRKNIPVYMNAVSDLLEENGVCLLHCITAQQE----CEGNQWIKKYIFPGG 292

Query: 357 ELHSINTL 364
            + SI  L
Sbjct: 293 YIPSIREL 300


>gi|124262723|ref|YP_001023193.1| tellurite resistance related protein [Methylibium petroleiphilum
           PM1]
 gi|124266381|ref|YP_001020385.1| tellurite resistance related protein [Methylibium petroleiphilum
           PM1]
 gi|124259156|gb|ABM94150.1| tellurite resistance related protein [Methylibium petroleiphilum
           PM1]
 gi|124261969|gb|ABM96958.1| tellurite resistance related protein [Methylibium petroleiphilum
           PM1]
          Length = 214

 Score = 36.9 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 55/157 (35%), Gaps = 27/157 (17%)

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEAL--LSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
           +P+ + ++    ++ +         ++  L R  + +      ILD   GSG      + 
Sbjct: 13  VPVVAATDAFYRENAQSYFDRTFGLSMVHLYRPFLEAVGEHGRILDVGSGSGRDVKAFRA 72

Query: 244 LRRSFIGIEMKQD-----------YIDIAT-------KRIASVQPLGNIELTVLTGKRTE 285
           L     GIE   +           Y  +A        +R  ++        ++L  +R+E
Sbjct: 73  LGYDAFGIEASPELATLASRHVGPYFTVARAESFETNERFDAIWACA----SLLHLRRSE 128

Query: 286 PRVAFNLLVERGLIQPGQILT-NAQGNISATVCADGT 321
                  L  R L++PG +     Q  +   V +DG 
Sbjct: 129 LYGTIRSL--RDLLRPGGVFFATVQVGVGDQVQSDGR 163


>gi|73915403|gb|AAZ92564.1| methylase [Helicobacter pylori]
          Length = 187

 Score = 36.9 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 27 NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
          ++  + + L    +DL+F DPPYN +   + Y    +LV    
Sbjct: 44 DANELAKTLK---IDLVFIDPPYNSRQYSRFYHLYENLVQWKK 83


>gi|67594709|ref|XP_665844.1| hypothetical protein [Cryptosporidium hominis TU502]
 gi|54656693|gb|EAL35614.1| hypothetical protein Chro.50400 [Cryptosporidium hominis]
          Length = 415

 Score = 36.9 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 205 PTQKPEAL-LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           PT     L      ++  K  DI+ DPF G+G     A     +  G ++ 
Sbjct: 150 PTTMDNELAFIMCNIAQVKKNDIVFDPFCGTGGILISASHFGATCFGSDLD 200


>gi|313108343|ref|ZP_07794375.1| hypothetical protein PA39016_001330069 [Pseudomonas aeruginosa
           39016]
 gi|310880877|gb|EFQ39471.1| hypothetical protein PA39016_001330069 [Pseudomonas aeruginosa
           39016]
          Length = 725

 Score = 36.9 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
           F  K +++ G+ +  L +      +LIF DPP
Sbjct: 612 FSDKQRLVHGDVMEWLRE-DDGQYELIFIDPP 642


>gi|307108670|gb|EFN56910.1| hypothetical protein CHLNCDRAFT_144591 [Chlorella variabilis]
          Length = 923

 Score = 36.9 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 197 NKDGEKLHPTQK-PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS--FIGIEM 253
            +   +L PT   PE       +++  PG ++LDPF G+G+    A +L  +   +G ++
Sbjct: 203 GEAARRLGPTAMAPELAAVSASLAAVHPGALVLDPFCGTGSLLEAALQLHGAGLAVGSDI 262

Query: 254 KQDYI 258
              + 
Sbjct: 263 DPTHF 267


>gi|260940104|ref|XP_002614352.1| hypothetical protein CLUG_05838 [Clavispora lusitaniae ATCC 42720]
 gi|238852246|gb|EEQ41710.1| hypothetical protein CLUG_05838 [Clavispora lusitaniae ATCC 42720]
          Length = 269

 Score = 36.9 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 25/69 (36%)

Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
                   H   K       +L   +     +LD   GSG SG +  +   ++IG+++  
Sbjct: 22  YTSSSRVQHIQAKMTLRALELLNLDSDQPHFLLDLGCGSGLSGEILTEEGYNWIGMDIAP 81

Query: 256 DYIDIATKR 264
             +  A  R
Sbjct: 82  SMLASALDR 90


>gi|33151544|ref|NP_872897.1| 23S rRNA m(2)G2445 methyltransferase [Haemophilus ducreyi 35000HP]
 gi|33147764|gb|AAP95286.1| Putative RNA methylase [Haemophilus ducreyi 35000HP]
          Length = 715

 Score = 36.9 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 41/140 (29%), Gaps = 25/140 (17%)

Query: 14  NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
           N +     ++ + + +  L +   +  +LIF DPP              S    + DSWD
Sbjct: 595 NGLKSRNHRLFQADCLQWLAECR-ERFELIFVDPP------------TFSNSKRMEDSWD 641

Query: 74  KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
                          +   +R+L  +G +    +       G  +       L  +    
Sbjct: 642 VQRDHI-------KLMTQLKRILTSDGMIVFSNNKR-----GFKMDFNGLTALGLVAENI 689

Query: 134 SNPMPNFRGRRFQNAHETLI 153
           S         R  + H   I
Sbjct: 690 SYKTLPLDFERDPHIHNCWI 709


>gi|291571980|dbj|BAI94252.1| modification methylase [Arthrospira platensis NIES-39]
          Length = 510

 Score = 36.9 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 207 QKPEALLSRI---LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF---IGIEMKQDYIDI 260
           Q P  L  RI   L S     D+I++P  G G     + +  +S    +G+E+  DYI  
Sbjct: 16  QTPIELAERICQKLSSLGVNPDLIVEPTCGVGNFIVASIQQFKSAAKIVGLEINPDYIKA 75

Query: 261 ATK 263
           A  
Sbjct: 76  AKN 78


>gi|288930665|ref|YP_003434725.1| ribosomal L11 methyltransferase [Ferroglobus placidus DSM 10642]
 gi|288892913|gb|ADC64450.1| ribosomal L11 methyltransferase [Ferroglobus placidus DSM 10642]
          Length = 197

 Score = 36.9 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 209 PEALLSRILV--SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           P AL++ I++        D++ D   G+G     +  L    IG+++ ++ + +A +
Sbjct: 29  PPALVAEIVLFAKMQNDLDLVFDLGCGTGIISIASALLGAFSIGVDVDREALSVARE 85


>gi|206978418|ref|ZP_03239287.1| ribosomal protein L11 methyltransferase [Bacillus cereus H3081.97]
 gi|217961802|ref|YP_002340372.1| ribosomal protein L11 methyltransferase [Bacillus cereus AH187]
 gi|229141050|ref|ZP_04269592.1| Ribosomal protein L11 methyltransferase [Bacillus cereus BDRD-ST26]
 gi|226710054|sp|B7HPL1|PRMA_BACC7 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|206743374|gb|EDZ54812.1| ribosomal protein L11 methyltransferase [Bacillus cereus H3081.97]
 gi|217066655|gb|ACJ80905.1| ribosomal protein L11 methyltransferase [Bacillus cereus AH187]
 gi|228642328|gb|EEK98617.1| Ribosomal protein L11 methyltransferase [Bacillus cereus BDRD-ST26]
          Length = 312

 Score = 36.9 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 56/173 (32%), Gaps = 26/173 (15%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-------------HPTQKPEALL 213
           ++             SD    + +  E   +   EK+             HPT     + 
Sbjct: 109 DWATAWKKYYHPVQISDTFTIVPTWEEYTPSSPEEKIIELDPGMAFGTGTHPTTT---MC 165

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATK--RIASVQP 270
            R L  + +PG+ I+D   GSG     A KL  S +   ++    ++ A    R+     
Sbjct: 166 IRALEKTVQPGNTIIDVGTGSGVLSIAAAKLGASSVQAYDLDPVAVESAEMNVRLNKTDD 225

Query: 271 LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
           + ++    L      P      L+   L+    +L       +A V   G L 
Sbjct: 226 IVSVGQNSLLEGIEGPV----DLIVANLLAEIILLFPED---AARVVKSGGLF 271


>gi|150391401|ref|YP_001321450.1| RNA methyltransferase [Alkaliphilus metalliredigens QYMF]
 gi|149951263|gb|ABR49791.1| RNA methyltransferase, TrmA family [Alkaliphilus metalliredigens
           QYMF]
          Length = 451

 Score = 36.9 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)

Query: 226 IILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATK 263
           ++ D + G+GT G  VA+K +   IGIE+ +D +  A +
Sbjct: 311 VVFDLYCGTGTIGQIVAQKAK-KVIGIEIVEDAVTAANE 348


>gi|218890752|ref|YP_002439616.1| 23S rRNA m(2)G2445 methyltransferase [Pseudomonas aeruginosa
           LESB58]
 gi|254241751|ref|ZP_04935073.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|126195129|gb|EAZ59192.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|218770975|emb|CAW26740.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58]
          Length = 725

 Score = 36.9 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
           F  K +++ G+ +  L +      +LIF DPP
Sbjct: 612 FSDKQRLVHGDVMEWLRE-DDGQYELIFIDPP 642


>gi|107102598|ref|ZP_01366516.1| hypothetical protein PaerPA_01003662 [Pseudomonas aeruginosa PACS2]
          Length = 719

 Score = 36.9 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
           F  K +++ G+ +  L +      +LIF DPP
Sbjct: 606 FSDKQRLVHGDVMEWLRE-DDGQYELIFIDPP 636


>gi|74136129|ref|NP_001027923.1| hypothetical protein LOC445946 [Takifugu rubripes]
 gi|33329803|gb|AAQ10287.1| putative RNA methylase [Takifugu rubripes]
          Length = 466

 Score = 36.9 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 14/34 (41%)

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            K  D + DPF G+G+      +      G ++ 
Sbjct: 215 VKKNDFVFDPFVGTGSLLIACSQFGAYVCGADID 248


>gi|15598244|ref|NP_251738.1| 23S rRNA m(2)G2445 methyltransferase [Pseudomonas aeruginosa PAO1]
 gi|81857122|sp|Q9HZG0|RLML_PSEAE RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|9949153|gb|AAG06436.1|AE004729_10 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
          Length = 725

 Score = 36.9 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
           F  K +++ G+ +  L +      +LIF DPP
Sbjct: 612 FSDKQRLVHGDVMEWLRE-DDGQYELIFIDPP 642


>gi|317178494|dbj|BAJ56282.1| Type II modification enzyme M.HpyI [Helicobacter pylori F30]
          Length = 327

 Score = 36.9 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 48/113 (42%), Gaps = 12/113 (10%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
           +++ + ++  ++EK+     D+++ DPPYN +  G  Y   +++      +    +   +
Sbjct: 186 NEVYQQDASELIEKISG---DILYLDPPYNARQYGANYHLLNTIAAYTPFAPKGKTGLPS 242

Query: 81  YDA--FT-RAWLLACRRVLKPNGTL-WVIGSYHNIF-----RIGTMLQNLNFW 124
           Y    F  RA +L     L       ++  SY+N        IG +L+    +
Sbjct: 243 YQKSSFCSRAKILNAFENLIKTARFKYIFLSYNNEGLMGETEIGNILKKYGAY 295


>gi|315161631|gb|EFU05648.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TX0645]
          Length = 217

 Score = 36.9 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 6/116 (5%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           +I    G  RL+  DG+   PT          ++     G + LD + GSG     A   
Sbjct: 36  VISGEYGGRRLKALDGDNTRPTTDKVKESIFNMIGPYFEGGMALDLYSGSGGLAIEAVSR 95

Query: 245 RR-SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT-----EPRVAFNLLV 294
                I IE     + +  + I   +     E+  +   R      E ++ F+L++
Sbjct: 96  GMDKSICIEKNFAALKVIKENIGITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 151


>gi|295113498|emb|CBL32135.1| RNA methyltransferase, RsmD family [Enterococcus sp. 7L76]
          Length = 184

 Score = 36.9 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 6/116 (5%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           +I    G  RL+  DG+   PT          ++     G + LD + GSG     A   
Sbjct: 3   VISGEYGGRRLKALDGDNTRPTTDKVKESIFNMIGPYFEGGMALDLYSGSGGLAIEAVSR 62

Query: 245 RR-SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT-----EPRVAFNLLV 294
                I IE     + +  + I   +     E+  +   R      E ++ F+L++
Sbjct: 63  GMDKSICIEKNFAALKVIKENIGITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 118


>gi|223041847|ref|ZP_03612035.1| putative N6-adenine-specific DNA methylase [Actinobacillus minor
           202]
 gi|223017340|gb|EEF15763.1| putative N6-adenine-specific DNA methylase [Actinobacillus minor
           202]
          Length = 712

 Score = 36.9 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 20/102 (19%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++ + + +  L +   +  +LIF DPP              S    + DSWD       
Sbjct: 600 HRLFQADCLQWLAECR-ERFELIFVDPP------------TFSNSKRMEDSWDVQRDHI- 645

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
                   +   +R+L   GT+    +          L  L 
Sbjct: 646 ------KLMKQLKRILTNEGTIVFSNNKRGFKMDFDGLAELG 681


>gi|49480887|ref|YP_035449.1| O-antigen biosynthesis protein; glycosyltransferase;
           methyltransferase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49332443|gb|AAT63089.1| possible O-antigen biosynthesis protein; possible
           glycosyltransferase; possible methyltransferase
           [Bacillus thuringiensis serovar konkukian str. 97-27]
          Length = 229

 Score = 36.9 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 58/165 (35%), Gaps = 24/165 (14%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           S    L  +     +    P  LL  I     +    +LD    SG  GA  K+      
Sbjct: 3   SPKNSLYEEKSGHYYNAVNP-NLLKHIKKEWKE----VLDIGCSSGALGAAIKENGTRVS 57

Query: 250 GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNA 308
           GIE   +  + A +++  V  LG+IE   +  +  +   V F  ++E         L + 
Sbjct: 58  GIEAFPEAAEQAKEKLDHVV-LGDIETMEMPYEEEQFDCVIFGDVLEH--------LFDP 108

Query: 309 ---QGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNG-WNF 349
                 +   +  +G +++     SI  V      +    G W++
Sbjct: 109 WAVIEKVKPYIKHNGVILA-----SIPNVAHISVLAPLLAGNWSY 148


>gi|15676726|ref|NP_273871.1| type I restriction enzyme EcoR124II M protein [Neisseria
           meningitidis MC58]
 gi|7226064|gb|AAF41241.1| type I restriction enzyme EcoR124II M protein [Neisseria
           meningitidis MC58]
 gi|316984502|gb|EFV63470.1| type I restriction-modification system, M subunit [Neisseria
           meningitidis H44/76]
 gi|325140020|gb|EGC62549.1| type I restriction-modification system, M subunit [Neisseria
           meningitidis CU385]
          Length = 514

 Score = 36.9 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 6/97 (6%)

Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
              N  + +  D    + S       K G +    Q    L++R+ V   +  + I DP 
Sbjct: 167 NFENHHIDLFGDAYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNKIYDPA 226

Query: 232 FGSGTSGAVAKK------LRRSFIGIEMKQDYIDIAT 262
            GSG+    AKK      +   F G E+     ++A 
Sbjct: 227 CGSGSLLLQAKKQFDEHIIEEGFFGQEINHTTYNLAR 263


>gi|66356850|ref|XP_625603.1| MJ0710-like (thump + methylase domains). RNA methylase
           [Cryptosporidium parvum Iowa II]
 gi|46226600|gb|EAK87588.1| MJ0710-like (thump + methylase domains). RNA methylase
           [Cryptosporidium parvum Iowa II]
          Length = 501

 Score = 36.9 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 205 PTQKPEAL-LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           PT     L      ++  K  DI+ DPF G+G     A     +  G ++ 
Sbjct: 238 PTTMDNELAFIMCNIAQVKKNDIVFDPFCGTGGILISASHFGATCFGSDLD 288


>gi|30261320|ref|NP_843697.1| hypothetical protein BA_1225 [Bacillus anthracis str. Ames]
 gi|47526490|ref|YP_017839.1| hypothetical protein GBAA_1225 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184152|ref|YP_027404.1| hypothetical protein BAS1132 [Bacillus anthracis str. Sterne]
 gi|65318588|ref|ZP_00391547.1| COG0500: SAM-dependent methyltransferases [Bacillus anthracis str.
           A2012]
 gi|165872832|ref|ZP_02217458.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167636109|ref|ZP_02394414.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|167641219|ref|ZP_02399473.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|170686702|ref|ZP_02877922.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|170708893|ref|ZP_02899327.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|177654457|ref|ZP_02936354.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190569171|ref|ZP_03022069.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I]
 gi|196036237|ref|ZP_03103636.1| conserved hypothetical protein [Bacillus cereus W]
 gi|218902411|ref|YP_002450245.1| hypothetical protein BCAH820_1293 [Bacillus cereus AH820]
 gi|227815939|ref|YP_002815948.1| hypothetical protein BAMEG_3365 [Bacillus anthracis str. CDC 684]
 gi|228944922|ref|ZP_04107283.1| O-antigen biosynthesis protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229604466|ref|YP_002865741.1| hypothetical protein BAA_1301 [Bacillus anthracis str. A0248]
 gi|254682618|ref|ZP_05146479.1| hypothetical protein BantC_02045 [Bacillus anthracis str.
           CNEVA-9066]
 gi|254725416|ref|ZP_05187198.1| hypothetical protein BantA1_23636 [Bacillus anthracis str. A1055]
 gi|254734036|ref|ZP_05191750.1| hypothetical protein BantWNA_02538 [Bacillus anthracis str. Western
           North America USA6153]
 gi|254740817|ref|ZP_05198506.1| hypothetical protein BantKB_07307 [Bacillus anthracis str. Kruger
           B]
 gi|254753660|ref|ZP_05205696.1| hypothetical protein BantV_14388 [Bacillus anthracis str. Vollum]
 gi|254758757|ref|ZP_05210784.1| hypothetical protein BantA9_10664 [Bacillus anthracis str.
           Australia 94]
 gi|30255174|gb|AAP25183.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gi|47501638|gb|AAT30314.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178079|gb|AAT53455.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
 gi|164711409|gb|EDR16960.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167510860|gb|EDR86252.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|167528463|gb|EDR91228.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|170126209|gb|EDS95102.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|170669225|gb|EDT19968.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|172080741|gb|EDT65823.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190559754|gb|EDV13741.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I]
 gi|195991212|gb|EDX55181.1| conserved hypothetical protein [Bacillus cereus W]
 gi|218540189|gb|ACK92587.1| conserved hypothetical protein [Bacillus cereus AH820]
 gi|227004864|gb|ACP14607.1| conserved hypothetical protein [Bacillus anthracis str. CDC 684]
 gi|228814591|gb|EEM60851.1| O-antigen biosynthesis protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229268874|gb|ACQ50511.1| conserved hypothetical protein [Bacillus anthracis str. A0248]
          Length = 229

 Score = 36.9 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 58/165 (35%), Gaps = 24/165 (14%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           S    L  +     +    P  LL  I     +    +LD    SG  GA  K+      
Sbjct: 3   SPKNSLYEEKSGHYYNAVNP-NLLKHIKKEWKE----VLDIGCSSGALGAAIKENGTRVS 57

Query: 250 GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNA 308
           GIE   +  + A +++  V  LG+IE   +  +  +   V F  ++E         L + 
Sbjct: 58  GIEAFPEAAEQAKEKLDHVV-LGDIETMEMPYEEEQFDCVIFGDVLEH--------LFDP 108

Query: 309 ---QGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNG-WNF 349
                 +   +  +G +++     SI  V      +    G W++
Sbjct: 109 WAVIEKVKPYIKHNGVILA-----SIPNVAHISVLAPLLAGNWSY 148


>gi|315126714|ref|YP_004068717.1| 23S rRNA m(2)G2445 methyltransferase [Pseudoalteromonas sp. SM9913]
 gi|315015228|gb|ADT68566.1| 23S rRNA m(2)G2445 methyltransferase [Pseudoalteromonas sp. SM9913]
          Length = 705

 Score = 36.9 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 54/150 (36%), Gaps = 29/150 (19%)

Query: 4   KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
           +++ A+N+  N+ + ++    + + +  LE    +  DLIF DPP         +     
Sbjct: 581 QDNFALNDISNTRYRFE----QADCLKWLEHAQGQY-DLIFLDPP--------TFSNSKR 627

Query: 64  LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
           + DA     D               L   +++L P+GTL    +       G ++  +  
Sbjct: 628 MKDAFDVQNDHIK-----------LLTWVKKILSPSGTLIFSNNKR-----GFVMDEVGL 671

Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
             L       S    +   +R +  H + +
Sbjct: 672 MGLGLKAENISEKTLSPDFKRNKKIHNSWL 701


>gi|269837913|ref|YP_003320141.1| hypothetical protein Sthe_1886 [Sphaerobacter thermophilus DSM
           20745]
 gi|269787176|gb|ACZ39319.1| Protein of unknown function methylase putative [Sphaerobacter
           thermophilus DSM 20745]
          Length = 194

 Score = 36.9 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 3/121 (2%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI-EMKQDYIDIATKR 264
           +Q+    L  +L +       +LD + GSG  G  A      +    E       +    
Sbjct: 25  SQRVREALFMVLHTLGVRPRRVLDLYAGSGGIGIEALSRGAEWCDFVEQNPAACAVIRDN 84

Query: 265 IASVQ--PLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           +AS +      +  T +    + P   ++L+V         IL   Q    +   A+GT+
Sbjct: 85  LASTRFTDRAAVHQTTVQSFLSRPLEPYDLVVMDPPYADPHILQTMQRVAESGAVAEGTI 144

Query: 323 I 323
           +
Sbjct: 145 L 145


>gi|228913887|ref|ZP_04077512.1| O-antigen biosynthesis protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228845826|gb|EEM90852.1| O-antigen biosynthesis protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 232

 Score = 36.9 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 58/165 (35%), Gaps = 24/165 (14%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           S    L  +     +    P  LL  I     +    +LD    SG  GA  K+      
Sbjct: 6   SPKNSLYEEKSGHYYNAVNP-NLLKHIKKEWKE----VLDIGCSSGALGAAIKENGTRVS 60

Query: 250 GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNA 308
           GIE   +  + A +++  V  LG+IE   +  +  +   V F  ++E         L + 
Sbjct: 61  GIEAFPEAAEQAKEKLDHVV-LGDIETMEMPYEEEQFDCVIFGDVLEH--------LFDP 111

Query: 309 ---QGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNG-WNF 349
                 +   +  +G +++     SI  V      +    G W++
Sbjct: 112 WAVIEKVKPYIKHNGVILA-----SIPNVAHISVLAPLLAGNWSY 151


>gi|150015996|ref|YP_001308250.1| O-methyltransferase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149902461|gb|ABR33294.1| O-methyltransferase, family 3 [Clostridium beijerinckii NCIMB 8052]
          Length = 214

 Score = 36.9 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
           + K KI +G+ + +LEKL  +  DLIF D
Sbjct: 106 DHKIKIEEGDCLEILEKL-NEPFDLIFMD 133


>gi|312867756|ref|ZP_07727962.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           parasanguinis F0405]
 gi|311096819|gb|EFQ55057.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           parasanguinis F0405]
          Length = 452

 Score = 36.9 bits (84), Expect = 5.6,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 57/160 (35%), Gaps = 8/160 (5%)

Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
             A  S        N +A+      V    D++     G+    +        T+  E L
Sbjct: 233 FPAIKSVMQNINDQNTNAIFGKEWRVLYGQDYITDQMLGNSFQISGPAFYQVNTEMAEKL 292

Query: 213 LSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
               +  +  K  D+++D + G GT G    K  +   G+E+  + ++ + K  AS+  +
Sbjct: 293 YQTAIDFAELKEDDVVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKN-ASINGI 351

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
            N      T +        N L E   IQP  IL +    
Sbjct: 352 TNAHYVCDTAENAM----KNWLKEG--IQPTAILVDPPRK 385


>gi|183230417|ref|XP_655659.2| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|169802922|gb|EAL50235.2| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS]
          Length = 437

 Score = 36.9 bits (84), Expect = 5.6,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 5/74 (6%)

Query: 186 IPICSGSERLRNKDGEKLHP----TQKPEALLSRILVSSTKPGDIIL-DPFFGSGTSGAV 240
             +C G+ +L N    K+ P    T     L   +          ++ DPF G+G++   
Sbjct: 165 YSLCKGNRKLVNHFSLKVRPYIGTTSMDPELCVIMSNMGCCRPGTVMCDPFTGTGSTLVT 224

Query: 241 AKKLRRSFIGIEMK 254
           +       +G+++ 
Sbjct: 225 SAHFGSYVLGMDIS 238


>gi|145630147|ref|ZP_01785929.1| putative type III restriction/modification system modification
           methylase [Haemophilus influenzae R3021]
 gi|144984428|gb|EDJ91851.1| putative type III restriction/modification system modification
           methylase [Haemophilus influenzae R3021]
          Length = 108

 Score = 36.9 bits (84), Expect = 5.6,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 42/118 (35%), Gaps = 12/118 (10%)

Query: 42  LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
           +I+ DPPY        Y  +    D     ++      ++  F +  L   R +L PNGT
Sbjct: 1   MIYIDPPY--------YFNETKPTDTFN--YNSNFKLSSWLLFMKNRLEVARELLAPNGT 50

Query: 102 LWVIGSYHNIFRIGTMLQNLNFW--ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
           + V  +      +  ++  +      +   +W+ ++   +   +   +    + +   
Sbjct: 51  ILVSINESGNAYLKILMNEIFNKENFVETFIWKNTDNPDSLSKKSRASVEYIIAFEKK 108


>gi|116334608|ref|YP_796135.1| cyclopropane fatty acid synthase-like protein [Lactobacillus brevis
           ATCC 367]
 gi|116099955|gb|ABJ65104.1| cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus brevis
           ATCC 367]
          Length = 396

 Score = 36.9 bits (84), Expect = 5.6,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 54/166 (32%), Gaps = 12/166 (7%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA-VAK 242
           WL    + S        + L+  Q    +   I     +PG  +LD   G GT     AK
Sbjct: 126 WLDDTMTYSCAYFETPEDDLYTAQMN-KVHHIIKKLDPQPGKTLLDIGCGWGTLMLTAAK 184

Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLI-QP 301
                  GI + Q+  D    RI     L ++    L   R   +  ++ +   G+    
Sbjct: 185 DYGLHVTGITLSQEQYDYVNARIKE-DGLEDVAEVRLEDYRELGKEQWDYITSVGMFEHV 243

Query: 302 GQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGW 347
           GQ       N       D  +        IH +  +  G+   NGW
Sbjct: 244 GQENLGQYFNCVQKYLKDDGVAL------IHGITRQQGGA--NNGW 281


>gi|228926352|ref|ZP_04089424.1| O-antigen biosynthesis protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228932590|ref|ZP_04095469.1| O-antigen biosynthesis protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229120837|ref|ZP_04250079.1| O-antigen biosynthesis protein [Bacillus cereus 95/8201]
 gi|228662497|gb|EEL18095.1| O-antigen biosynthesis protein [Bacillus cereus 95/8201]
 gi|228827059|gb|EEM72814.1| O-antigen biosynthesis protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228833176|gb|EEM78741.1| O-antigen biosynthesis protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 232

 Score = 36.9 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 58/165 (35%), Gaps = 24/165 (14%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           S    L  +     +    P  LL  I     +    +LD    SG  GA  K+      
Sbjct: 6   SPKNSLYEEKSGHYYNAVNP-NLLKHIKKEWKE----VLDIGCSSGALGAAIKENGTRVS 60

Query: 250 GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNA 308
           GIE   +  + A +++  V  LG+IE   +  +  +   V F  ++E         L + 
Sbjct: 61  GIEAFPEAAEQAKEKLDHVV-LGDIETMEMPYEEEQFDCVIFGDVLEH--------LFDP 111

Query: 309 ---QGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNG-WNF 349
                 +   +  +G +++     SI  V      +    G W++
Sbjct: 112 WAVIEKVKPYIKHNGVILA-----SIPNVAHISVLAPLLAGNWSY 151


>gi|126462610|ref|YP_001043724.1| hypothetical protein Rsph17029_1848 [Rhodobacter sphaeroides ATCC
           17029]
 gi|126104274|gb|ABN76952.1| protein of unknown function DUF1156 [Rhodobacter sphaeroides ATCC
           17029]
          Length = 968

 Score = 36.9 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 17/40 (42%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           + DPF G G+    A++L     G ++    + I    I 
Sbjct: 153 VYDPFSGGGSIPLEAQRLGLPAYGSDLNPVAVMIGKAMIE 192


>gi|295112573|emb|CBL31210.1| Adenine-specific DNA methylase [Enterococcus sp. 7L76]
          Length = 410

 Score = 36.9 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 8/53 (15%)

Query: 22  KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
           +I + +S  ++ K+   S D+ F DPPYN +   + Y     +       WDK
Sbjct: 262 QIFREDSNELVRKI---SADVAFIDPPYNSRQYSRFYHVLEGIA-----KWDK 306


>gi|302384141|ref|YP_003819964.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Brevundimonas subvibrioides ATCC 15264]
 gi|302194769|gb|ADL02341.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 344

 Score = 36.9 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 3/26 (11%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYN 50
           +G+++ +         DL++ DPPYN
Sbjct: 187 QGDALEIASAFDG---DLVYLDPPYN 209


>gi|242024724|ref|XP_002432776.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212518285|gb|EEB20038.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 277

 Score = 36.9 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 29/48 (60%)

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           L++       +LD   GSG SG+V ++   +++G+++ Q  ++IA +R
Sbjct: 44  LLALPDRPCFLLDLGCGSGLSGSVLEEQGHTWVGLDISQAMLNIAKER 91


>gi|156308544|ref|XP_001617681.1| hypothetical protein NEMVEDRAFT_v1g225887 [Nematostella vectensis]
 gi|156195235|gb|EDO25581.1| predicted protein [Nematostella vectensis]
          Length = 336

 Score = 36.9 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 21/99 (21%)

Query: 11  ENQNSIFEWKDKIIKGNSISVLEKLPAK-------SVDLIFADPPYNLQLNGQLYRPDHS 63
           E+ N + + K  I +  S+  +  +            D+IF +PP+             +
Sbjct: 108 EDPNELNKIKASIKQ--SLERMADIDNNYTDDARGKFDMIFTNPPFG------------A 153

Query: 64  LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL 102
            V    +  DK+   +  DA    ++ AC ++LKP G +
Sbjct: 154 KVKVEKEIADKYDLSKYSDAPEVLFIEACYKLLKPGGKM 192


>gi|148358592|ref|YP_001249799.1| N6-adenine specific methylase [Legionella pneumophila str. Corby]
 gi|148280365|gb|ABQ54453.1| N6-adenine specific methylase [Legionella pneumophila str. Corby]
          Length = 141

 Score = 36.9 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
          +IK ++++ L++   +  DLIF DPPY L  
Sbjct: 58 LIKTDTLNYLKQ-STEQFDLIFLDPPYALNY 87


>gi|146077025|ref|XP_001463064.1| methyltransferase-like protein [Leishmania infantum]
 gi|134067146|emb|CAM65411.1| methyltransferase-like protein [Leishmania infantum JPCM5]
 gi|322496494|emb|CBZ31564.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 614

 Score = 36.9 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 18/46 (39%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           PE  L  + +S    G  + DPF G+G+    A        G +  
Sbjct: 235 PEESLMMVNMSGVCRGHYVYDPFCGTGSLLIAAAHYGARTFGSDAD 280


>gi|125625315|ref|YP_001033798.1| hypothetical protein llmg_2562 [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124494123|emb|CAL99124.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300072129|gb|ADJ61529.1| hypothetical protein LLNZ_13245 [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 211

 Score = 36.9 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 13/100 (13%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           K   +   +L       D+++D   G+G       +L       ++++  ++   KR+  
Sbjct: 3   KQIEMAHWMLKDIINVDDVVVDATMGNGYDTLFLAELGAKVYAFDVQEAALEATEKRLE- 61

Query: 268 VQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTN 307
                N  +     K+  P       V++  + P +   N
Sbjct: 62  -----NKAIKTQIVKKASP-------VDQSSLPPKEQAFN 89


>gi|317181182|dbj|BAJ58968.1| Type II methylase [Helicobacter pylori F32]
          Length = 333

 Score = 36.9 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 9   INENQNSIFEWKDKII-KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
           I E  N I   K+ +I + N+  + + L    +DL+F DPPYN +   + Y    +LV  
Sbjct: 171 IFELINPIKHDKNIMIERKNANELAKTLK---IDLVFIDPPYNSRQYSRFYHLYENLVQW 227

Query: 68  VT 69
             
Sbjct: 228 KK 229


>gi|268319868|ref|YP_003293524.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           johnsonii FI9785]
 gi|262398243|emb|CAX67257.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           johnsonii FI9785]
          Length = 459

 Score = 36.9 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 8/78 (10%)

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK--RIASVQP----LGNIEL 276
           P   ++D + G GT G +A    R  IGIE   + +  A +  R+  V+      GN+E 
Sbjct: 310 PDQTLIDAYAGVGTLGILASDQVRQVIGIESIPEAVIDAQENCRLNHVRNAEYIQGNVEK 369

Query: 277 TVLTGKRTEPRVAFNLLV 294
            +   K     V  N L+
Sbjct: 370 LLPELKNQG--VPINALI 385


>gi|227889569|ref|ZP_04007374.1| possible tRNA (uracil-5-)-methyltransferase [Lactobacillus
           johnsonii ATCC 33200]
 gi|227849871|gb|EEJ59957.1| possible tRNA (uracil-5-)-methyltransferase [Lactobacillus
           johnsonii ATCC 33200]
          Length = 459

 Score = 36.9 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 8/78 (10%)

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK--RIASVQP----LGNIEL 276
           P   ++D + G GT G +A    R  IGIE   + +  A +  R+  V+      GN+E 
Sbjct: 310 PDQTLIDAYAGVGTLGILASDQVRQVIGIESIPEAVIDAQENCRLNHVRNAEYIQGNVEK 369

Query: 277 TVLTGKRTEPRVAFNLLV 294
            +   K     V  N L+
Sbjct: 370 LLPELKNQG--VPINALI 385


>gi|254448342|ref|ZP_05061803.1| methylase [gamma proteobacterium HTCC5015]
 gi|198261955|gb|EDY86239.1| methylase [gamma proteobacterium HTCC5015]
          Length = 725

 Score = 36.9 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 43/133 (32%), Gaps = 26/133 (19%)

Query: 20  KDKIIKGNSISVLEKLPAKSV-DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           K ++I+ + +  +++   + V DLIF DPP         +       D      D     
Sbjct: 612 KHQLIRADVMEWIQQ--DRGVYDLIFIDPP--------TFSNSKRTEDVFDIQRDHI--- 658

Query: 79  EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ---NLNFWILNDIVWRKSN 135
                   A + A    L P G L+   ++   F +   L+    +     + +      
Sbjct: 659 --------ALIQAAMARLTPTGVLYFSNNFR-RFEMDADLEHHFQIEEISRDTLDPDYER 709

Query: 136 PMPNFRGRRFQNA 148
                R  R Q+ 
Sbjct: 710 NQKIHRTWRIQHQ 722


>gi|167540329|ref|XP_001741834.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165893419|gb|EDR21676.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 648

 Score = 36.9 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 5/74 (6%)

Query: 186 IPICSGSERLRNKDGEKLHP----TQKPEALLSRILVSSTKPGDIIL-DPFFGSGTSGAV 240
             +C G+ +L N    K+ P    T     L   +          ++ DPF G+G++   
Sbjct: 198 YSLCKGNRKLVNHFSLKVRPYIGTTSMDPELCVIMSNMGCCRPGTVMCDPFTGTGSTLVT 257

Query: 241 AKKLRRSFIGIEMK 254
           +       +G+++ 
Sbjct: 258 SAHFGSYVLGMDIS 271


>gi|42519480|ref|NP_965410.1| hypothetical protein LJ1606 [Lactobacillus johnsonii NCC 533]
 gi|51316713|sp|Q74IG2|Y1606_LACJO RecName: Full=Uncharacterized RNA methyltransferase LJ_1606
 gi|41583768|gb|AAS09376.1| hypothetical protein LJ_1606 [Lactobacillus johnsonii NCC 533]
          Length = 459

 Score = 36.9 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 8/78 (10%)

Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK--RIASVQP----LGNIEL 276
           P   ++D + G GT G +A    R  IGIE   + +  A +  R+  V+      GN+E 
Sbjct: 310 PDQTLIDAYAGVGTLGILASDQVRQVIGIESIPEAVIDAQENCRLNHVRNAEYIQGNVEK 369

Query: 277 TVLTGKRTEPRVAFNLLV 294
            +   K     V  N L+
Sbjct: 370 LLPELKNQG--VPINALI 385


>gi|307244230|ref|ZP_07526345.1| RNA methyltransferase, RsmD family [Peptostreptococcus stomatis DSM
           17678]
 gi|306492380|gb|EFM64418.1| RNA methyltransferase, RsmD family [Peptostreptococcus stomatis DSM
           17678]
          Length = 186

 Score = 36.9 bits (84), Expect = 5.8,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 20  KDKIIKGNSISVLEKLP--AKSVDLIFADPPY 49
           + +++ G+    L  +    +  DLIF DPPY
Sbjct: 92  RSQLVNGDFKKCLRDMETRKQKFDLIFVDPPY 123


>gi|282851548|ref|ZP_06260913.1| ParB-like protein [Lactobacillus gasseri 224-1]
 gi|282557516|gb|EFB63113.1| ParB-like protein [Lactobacillus gasseri 224-1]
          Length = 325

 Score = 36.9 bits (84), Expect = 5.8,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 212 LLSRILVSSTKPGDI--ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           +L+ I+     P     I DPF G    G VA  L   + GI+++++ ID
Sbjct: 195 VLTEIIYKWFIPYANANIYDPFAGGSVRGIVAATLGHHYTGIDLRKEQID 244


>gi|153815334|ref|ZP_01968002.1| hypothetical protein RUMTOR_01568 [Ruminococcus torques ATCC 27756]
 gi|317501689|ref|ZP_07959880.1| ribosomal protein L11 methyltransferase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331088426|ref|ZP_08337341.1| 50S ribosomal protein L11 methyltransferase [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|145847396|gb|EDK24314.1| hypothetical protein RUMTOR_01568 [Ruminococcus torques ATCC 27756]
 gi|316896940|gb|EFV19020.1| ribosomal protein L11 methyltransferase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330408193|gb|EGG87681.1| 50S ribosomal protein L11 methyltransferase [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 317

 Score = 36.9 bits (84), Expect = 5.8,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 57/169 (33%), Gaps = 20/169 (11%)

Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
            +        + Y  +   + +  E      D +I             G  +H T     
Sbjct: 108 WVNNWKQYFHQFYVDDVLIIPSWEEVKPEDEDKMI----IHIDPGTAFGTGMHETT---Q 160

Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF-IGIEMKQDYIDIATKRIASVQP 270
           L  R +         ILD   GSG  G +A K    + +G ++    ID   +       
Sbjct: 161 LCIRQIRKYVTENTKILDVGCGSGILGMLALKFGAKYSVGTDLDPCAIDATHE------- 213

Query: 271 LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
             N+E+  ++  R E  V    +++   +Q  ++       ++A + AD
Sbjct: 214 --NMEVNGISKDRYE--VMIGNIIDDKEVQD-KVGYECYDIVAANILAD 257


>gi|83858698|ref|ZP_00952220.1| Protein-L-isoaspartate carboxylmethyltransferase [Oceanicaulis
           alexandrii HTCC2633]
 gi|83853521|gb|EAP91373.1| Protein-L-isoaspartate carboxylmethyltransferase [Oceanicaulis
           alexandrii HTCC2633]
          Length = 218

 Score = 36.9 bits (84), Expect = 5.8,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 56/136 (41%), Gaps = 13/136 (9%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE-MKQDYIDIATKRIAS 267
           P  L   I  +  +  D++LD   G G S AV  ++  + +G+E      ++ AT  + +
Sbjct: 64  PRDLAKLIQAADIRRTDVVLDVACGRGYSTAVLARMAETVVGLEQKDLGLVEKATDALNA 123

Query: 268 VQPLGNIELTVLTGKRTEPRVAFNLLVERGLI-QPGQILTNAQ---GNISATVCADGTLI 323
           ++    + +     K    +  F++++  G + +P Q   +     G ++  V  DGT+ 
Sbjct: 124 IETDNAVVVEGDLSKGVPGQGPFDVIIVNGAVAEPAQAWLDQLAVGGRLAVIVR-DGTVG 182

Query: 324 SGTELGSIHRVGAKVS 339
                    R+  K  
Sbjct: 183 Q-------ARIYTKAQ 191


>gi|260439323|ref|ZP_05793139.1| hypothetical protein BUTYVIB_02405 [Butyrivibrio crossotus DSM
           2876]
 gi|292808333|gb|EFF67538.1| hypothetical protein BUTYVIB_02405 [Butyrivibrio crossotus DSM
           2876]
          Length = 422

 Score = 36.9 bits (84), Expect = 5.8,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 204 HPTQKPEALLSRILVSSTKPG---DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
           +P + P  + S+    +   G   + + D F G GT    +K     F G ++      I
Sbjct: 37  YPAKFPAFIASKAFEYAKNEGVEINKVADIFCGCGTVALESKIHNYDFWGCDINPVATLI 96

Query: 261 AT 262
           A 
Sbjct: 97  AK 98



 Score = 36.1 bits (82), Expect = 9.7,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 2/44 (4%)

Query: 33  EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           + LP   VDL+   PPY             SL    TD + K  
Sbjct: 237 KDLP--KVDLVITSPPYVTSYEYADLHQLSSLWLNYTDDYRKLR 278


>gi|160879797|ref|YP_001558765.1| RNA methyltransferase [Clostridium phytofermentans ISDg]
 gi|160428463|gb|ABX42026.1| RNA methyltransferase, TrmA family [Clostridium phytofermentans
           ISDg]
          Length = 554

 Score = 36.9 bits (84), Expect = 5.8,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 5/99 (5%)

Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVS-STKPGDIILDPFFGSGTSGAVAKKLRR 246
           +C    R+ +K   +++P Q  E L    + +      + ++D + G GT G VA K  +
Sbjct: 371 LCGNVFRISSKSFYQVNPVQT-ERLYQLAIKAAGLTGKERVIDAYCGIGTIGLVASKNAK 429

Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
             +G+E+ ++ I  A   IA+ +  G           TE
Sbjct: 430 EVLGVEVNKEAIKDA---IANAKRNGITNEHFYNSDATE 465


>gi|150009887|ref|YP_001304630.1| O-methyltransferase [Parabacteroides distasonis ATCC 8503]
 gi|255012870|ref|ZP_05284996.1| O-methyltransferase [Bacteroides sp. 2_1_7]
 gi|256838404|ref|ZP_05543914.1| O-methyltransferase [Parabacteroides sp. D13]
 gi|298374241|ref|ZP_06984199.1| O-methyltransferase family protein [Bacteroides sp. 3_1_19]
 gi|149938311|gb|ABR45008.1| O-methyltransferase [Parabacteroides distasonis ATCC 8503]
 gi|256739323|gb|EEU52647.1| O-methyltransferase [Parabacteroides sp. D13]
 gi|298268609|gb|EFI10264.1| O-methyltransferase family protein [Bacteroides sp. 3_1_19]
          Length = 211

 Score = 36.9 bits (84), Expect = 5.8,   Method: Composition-based stats.
 Identities = 8/44 (18%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
           +     +     S+ + K K+  G+++ ++ +L  ++ D++F D
Sbjct: 91  EMEDFIMKYLSRSLHKDKIKVHFGDAMEIIPRL-DETFDMVFID 133


>gi|148998851|ref|ZP_01826287.1| RNA methyltransferase, TrmA family protein [Streptococcus
           pneumoniae SP11-BS70]
 gi|307067795|ref|YP_003876761.1| SAM-dependent methyltransferase [Streptococcus pneumoniae AP200]
 gi|147755278|gb|EDK62329.1| RNA methyltransferase, TrmA family protein [Streptococcus
           pneumoniae SP11-BS70]
 gi|301794164|emb|CBW36574.1| putative RNA methyltransferase [Streptococcus pneumoniae INV104]
 gi|306409332|gb|ADM84759.1| SAM-dependent methyltransferase [Streptococcus pneumoniae AP200]
          Length = 543

 Score = 36.9 bits (84), Expect = 5.8,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 54/146 (36%), Gaps = 8/146 (5%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGD 225
           N +A+           D++     G++            T+  E L    +  +  K  D
Sbjct: 247 NTNAIFGKEWCTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDD 306

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           +++D + G GT G    K  +   G+E+  + ++ + K  AS+  + N      T +   
Sbjct: 307 VVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSQKN-ASLNKITNAHYVCDTAENAM 365

Query: 286 PRVAFNLLVERGLIQPGQILTNAQGN 311
            +     L E   IQP  IL +    
Sbjct: 366 KK----WLKEG--IQPTVILVDPPRK 385


>gi|170726496|ref|YP_001760522.1| 23S rRNA m(2)G2445 methyltransferase [Shewanella woodyi ATCC 51908]
 gi|229560183|sp|B1KDN0|RLML_SHEWM RecName: Full=Ribosomal RNA large subunit methyltransferase L;
           AltName: Full=23S rRNA m2G2445 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmL
 gi|169811843|gb|ACA86427.1| putative RNA methylase [Shewanella woodyi ATCC 51908]
          Length = 711

 Score = 36.9 bits (84), Expect = 5.8,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 53/155 (34%), Gaps = 27/155 (17%)

Query: 1   MSQKNSLAINENQ--NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
           MS   +    EN   N + + K + ++ N +  ++    K  DLIF DPP          
Sbjct: 577 MSNTYTNWAKENFALNGLNDDKYQFVQANCMQWIKTTHDK-FDLIFIDPP---------- 625

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
               S    + DS+D               L +  ++L PNG +    +          L
Sbjct: 626 --TFSNSKRMEDSFDVLRDH-------VPLLSSLIKLLNPNGEIIFSNNKRKFKMEIEAL 676

Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           + LNF + N       N       +R    H T +
Sbjct: 677 EALNFTVKN-----IDNQTLPLDFKRNPQIHNTWL 706


>gi|317126980|ref|YP_004093262.1| methyltransferase type 12 [Bacillus cellulosilyticus DSM 2522]
 gi|315471928|gb|ADU28531.1| Methyltransferase type 12 [Bacillus cellulosilyticus DSM 2522]
          Length = 188

 Score = 36.9 bits (84), Expect = 5.9,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 52/125 (41%), Gaps = 8/125 (6%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           P  +L ++    T+  + ++D   G GT     +  ++ + IGI++ + Y+ +  +R+A+
Sbjct: 20  PIEILKKL--EVTEKVNTLIDVGCGYGTFLIPASHIVKENVIGIDIDEHYLRVCQERVAT 77

Query: 268 VQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTE 327
              +  I   +    ++    A   +     I    IL      +   + A   +  G +
Sbjct: 78  NDKVRLITGDITDIVKS----AEGDIKLADYITLFNILHCEDP-VQLFIDAAKLIKVGGK 132

Query: 328 LGSIH 332
           +G IH
Sbjct: 133 VGVIH 137


>gi|270292705|ref|ZP_06198916.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           M143]
 gi|270278684|gb|EFA24530.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           M143]
          Length = 455

 Score = 36.9 bits (84), Expect = 5.9,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 54/146 (36%), Gaps = 8/146 (5%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGD 225
           N +A+           D++     G++            TQ  E L    +  +  +  D
Sbjct: 247 NTNAIFGKEWKTLYGQDYITDQMLGNDFQIAGPAFYQVNTQMAEKLYQTAIDFAELREDD 306

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           +++D + G GT G    K  +   G+E+  + ++ + K  A++  + N      T +   
Sbjct: 307 VVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSKKN-AALNNITNAHYVCDTAENAM 365

Query: 286 PRVAFNLLVERGLIQPGQILTNAQGN 311
                N L E   IQP  IL +    
Sbjct: 366 ----KNWLKEG--IQPTVILVDPPRK 385


>gi|226192654|pdb|3EGI|A Chain A, Methyltransferase Domain Of Human Trimethylguanosine
           Synthase Tgs1 Bound To M7gpppa (Inactive Form)
 gi|226192655|pdb|3EGI|B Chain B, Methyltransferase Domain Of Human Trimethylguanosine
           Synthase Tgs1 Bound To M7gpppa (Inactive Form)
 gi|226192656|pdb|3EGI|C Chain C, Methyltransferase Domain Of Human Trimethylguanosine
           Synthase Tgs1 Bound To M7gpppa (Inactive Form)
 gi|226192657|pdb|3EGI|D Chain D, Methyltransferase Domain Of Human Trimethylguanosine
           Synthase Tgs1 Bound To M7gpppa (Inactive Form)
          Length = 206

 Score = 36.9 bits (84), Expect = 5.9,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 209 PEALLSRI--LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PE +   I   VS +   D+++D F G G +           I I++    + IA  R
Sbjct: 27  PEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGXRVIAIDIDP--VKIALAR 82


>gi|288817997|ref|YP_003432344.1| putative methyltransferase [Hydrogenobacter thermophilus TK-6]
 gi|288787396|dbj|BAI69143.1| putative methyltransferase [Hydrogenobacter thermophilus TK-6]
 gi|308751597|gb|ADO45080.1| Protein of unknown function methylase putative [Hydrogenobacter
           thermophilus TK-6]
          Length = 153

 Score = 36.9 bits (84), Expect = 5.9,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 16  IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNL 51
           I + K K++  +++  L     +  D+IFADPPY+ 
Sbjct: 68  IKKTKSKVVISDALKFLMSFEDR-ADVIFADPPYDY 102


>gi|226948213|ref|YP_002803304.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Clostridium botulinum A2 str. Kyoto]
 gi|226842276|gb|ACO84942.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Clostridium botulinum A2 str. Kyoto]
          Length = 193

 Score = 36.9 bits (84), Expect = 5.9,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 54/146 (36%), Gaps = 12/146 (8%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK---KLRRSFIGIEMKQDYIDIA 261
           P  K +  +  I   + +    +LD   G+G+    A    K  R F  IE  ++ +DI 
Sbjct: 15  PMTKEDIRILSISKMNLEENSKVLDVGAGTGSVSIQAATICKKGRVF-AIEKDEEALDII 73

Query: 262 TKRIASVQPLGNIELTVLTGKRTEP--RVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            K        GNI++      + E   + +FN +   G    G  L          +  +
Sbjct: 74  KKN-KEKFNCGNIKIIEGDALKVEEIIKESFNSIFIGG---SGGNLEEIISRYGDKLLDN 129

Query: 320 GTLISGTELGSIHRVGAKVSGSETCN 345
           GT++       I+ + A +   +  N
Sbjct: 130 GTMVLNFIT--INNLNAALETLKKLN 153


>gi|224372548|ref|YP_002606920.1| diguanylate cyclase [Nautilia profundicola AmH]
 gi|223589976|gb|ACM93712.1| diguanylate cyclase [Nautilia profundicola AmH]
          Length = 400

 Score = 36.9 bits (84), Expect = 5.9,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 8/53 (15%)

Query: 2   SQKNSLAINENQNSIFEWK---DKI----IKG-NSISVLEKLPAKSVDLIFAD 46
            Q   L +++++N +   K   +KI    I+  + +  LEKL   S+DLI  D
Sbjct: 120 RQVKVLIVDKDKNILDLEKRILNKININVIQAQDGLEALEKLKTNSIDLILTD 172


>gi|13492588|gb|AAK28284.1| unknown [Leishmania major]
          Length = 363

 Score = 36.9 bits (84), Expect = 5.9,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 9/108 (8%)

Query: 178 VQMRSDWLIP-----ICSGSERLRNKDGEKLHPTQK---PEALLSRILVSSTKPGDIILD 229
                 W          S S +   +  +K     K   P  +   I +++  PG+   D
Sbjct: 146 HTCHCVWFGAQLEHCYASLSLKRETERIKKRELCAKSILPPFVTRLIRIANVAPGETFYD 205

Query: 230 PFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
              G+G+    VA       +G+E+     ++A    A ++P+   + 
Sbjct: 206 LGCGNGSVLFQVAALTGARCVGVEINPHNAEVANAAWAFLRPIFEAQF 253


>gi|71661789|ref|XP_817910.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70883131|gb|EAN96059.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 292

 Score = 36.9 bits (84), Expect = 5.9,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 35/115 (30%), Gaps = 8/115 (6%)

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
                   F     +  N          I   +GS  L  K          P  +   + 
Sbjct: 67  HHCFTKRCFCVLFDRMLNHVYSNLYCKRITEVAGSRHLCAKS-------LLPTFVSRMVR 119

Query: 218 VSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           +   K  D   D   G+G+    VA       +GIE+ +   ++A     S++P 
Sbjct: 120 LMEVKSEDTFYDLGCGNGSVLFQVAFLTGARCVGIEISEHNANVAKTAWESLKPQ 174


>gi|326386604|ref|ZP_08208226.1| tRNA (guanine-N(7)-)-methyltransferase [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208919|gb|EGD59714.1| tRNA (guanine-N(7)-)-methyltransferase [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 239

 Score = 36.9 bits (84), Expect = 6.0,   Method: Composition-based stats.
 Identities = 6/18 (33%), Positives = 12/18 (66%)

Query: 22  KIIKGNSISVLEKLPAKS 39
           +I  G+++ VL ++P  S
Sbjct: 114 RIHHGDALEVLRRIPDGS 131


>gi|91088207|ref|XP_973242.1| PREDICTED: similar to CG3808 CG3808-PA [Tribolium castaneum]
 gi|270011827|gb|EFA08275.1| hypothetical protein TcasGA2_TC005909 [Tribolium castaneum]
          Length = 586

 Score = 36.9 bits (84), Expect = 6.0,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 206 TQKPEALLSRILVSSTKPGD-IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI--DIAT 262
           T+  E L   I+  ++   D  +LD   G+GT G    K  +  +GIE+    I    A 
Sbjct: 401 TKGAEILYKSIIELASPTEDSTVLDVCCGTGTIGLCFAKNCKKVLGIEIVPQAIIDAKAN 460

Query: 263 KRIASVQ 269
            ++  ++
Sbjct: 461 AKLNEIE 467


>gi|90417308|ref|ZP_01225234.1| hypothetical protein GB2207_00800 [marine gamma proteobacterium
           HTCC2207]
 gi|90330893|gb|EAS46156.1| hypothetical protein GB2207_00800 [marine gamma proteobacterium
           HTCC2207]
          Length = 705

 Score = 36.9 bits (84), Expect = 6.0,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 10  NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
           N + N+I      +++ + +  LE    +  D+IF DPP          +   S++D   
Sbjct: 581 NYDLNNISAKNHHLLRADCLKWLET-DGEQFDVIFLDPP-----TFSNSKKMDSILDVQR 634

Query: 70  DSWDKFSS 77
           D  D   +
Sbjct: 635 DHGDLIRN 642


>gi|89895874|ref|YP_519361.1| ribosomal protein L11 methylase [Desulfitobacterium hafniense Y51]
 gi|122481887|sp|Q24SS5|PRMA_DESHY RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|89335322|dbj|BAE84917.1| ribosomal protein L11 methylase [Desulfitobacterium hafniense Y51]
          Length = 312

 Score = 36.9 bits (84), Expect = 6.0,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 46/134 (34%), Gaps = 9/134 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G   H T    +L    L  + KP   I D   GSG     A KL      I++    + 
Sbjct: 152 GTGTHATT---SLCLETLEETVKPDMRIFDLGTGSGILAIAAAKLGAQVEAIDLDSVAVK 208

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A + +   Q    I +            A   LV   +I    ++     ++   +  D
Sbjct: 209 VAQENVELNQVADRISVRQGDLGTVLQGQA--DLVVANII--ADVILMLIPDLKRIMKED 264

Query: 320 GTLISGTELGSIHR 333
           G  ++   +G  HR
Sbjct: 265 GEFLASGIIG--HR 276


>gi|219670303|ref|YP_002460738.1| ribosomal protein L11 methyltransferase [Desulfitobacterium
           hafniense DCB-2]
 gi|254783300|sp|B8FUN2|PRMA_DESHD RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|219540563|gb|ACL22302.1| ribosomal protein L11 methyltransferase [Desulfitobacterium
           hafniense DCB-2]
          Length = 312

 Score = 36.9 bits (84), Expect = 6.0,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 46/134 (34%), Gaps = 9/134 (6%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
           G   H T    +L    L  + KP   I D   GSG     A KL      I++    + 
Sbjct: 152 GTGTHATT---SLCLETLEETVKPDMRIFDLGTGSGILAIAAAKLGAQVEAIDLDSVAVK 208

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           +A + +   Q    I +            A   LV   +I    ++     ++   +  D
Sbjct: 209 VAQENVELNQVADRISVRQGDLGTVLQGQA--DLVVANII--ADVILMLIPDLKRIMKED 264

Query: 320 GTLISGTELGSIHR 333
           G  ++   +G  HR
Sbjct: 265 GEFLASGIIG--HR 276


>gi|317009650|gb|ADU80230.1| cyclopropane fatty acid synthase [Helicobacter pylori India7]
          Length = 389

 Score = 36.5 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 49/299 (16%), Positives = 95/299 (31%), Gaps = 29/299 (9%)

Query: 93  RRVLKPNGTLWVIGSYHNIFRIGTM----LQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
            +V+  + +++  G +   F +         ++   +   I     + + +  G   +  
Sbjct: 19  YQVVFWDNSVYRNGEHSPKFTLKIHRPLKFSDIKKDMSLTIAEAYMDGVIDIEGSMDEVM 78

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRS---------DWLIPICSGSERLRNKD 199
           H   +  +     K                  +           WL    S S     KD
Sbjct: 79  HSLYLQTNYEHLHKHDNAKAIQKPIKESSNISKHYDLGNDFYSIWLDETLSYSCAYFKKD 138

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYI 258
            + LH  Q  + L   +     KPG+ +LD   G G      A++     +GI +  +  
Sbjct: 139 DDTLHAAQL-QKLDHTLKKLHLKPGEKLLDIGCGWGYLSVKAAQEYGAEVMGITISSEQY 197

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRV-AFNLLVERGLI-QPGQILTNAQGNISATV 316
             A KR+  +     + + +L  +  + R+  F+ +V  G+    G+            V
Sbjct: 198 KQANKRVQELGLEDKVTIKLLNYQDLDGRLYRFDKVVSVGMFEHVGKDNLPFYFKKVKEV 257

Query: 317 CADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYNC 375
              G +        +H +     G    N W   Y    G L S   LR ++   +  C
Sbjct: 258 LKRGGMFL------LHSILCCFEGKT--NAWVDKYIFPGGYLPS---LREVM-SVMSEC 304


>gi|229098783|ref|ZP_04229721.1| Ribosomal protein L11 methyltransferase [Bacillus cereus Rock3-29]
 gi|229104943|ref|ZP_04235599.1| Ribosomal protein L11 methyltransferase [Bacillus cereus Rock3-28]
 gi|228678437|gb|EEL32658.1| Ribosomal protein L11 methyltransferase [Bacillus cereus Rock3-28]
 gi|228684627|gb|EEL38567.1| Ribosomal protein L11 methyltransferase [Bacillus cereus Rock3-29]
          Length = 312

 Score = 36.5 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 55/173 (31%), Gaps = 26/173 (15%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-------------HPTQKPEALL 213
           ++             SD    + +  E   +   EK+             HPT     + 
Sbjct: 109 DWATAWKKYYHPVQISDTFTIVPTWEEYTPSSPDEKIIELDPGMAFGTGTHPTTT---MC 165

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATK--RIASVQP 270
            R L  + + GD ++D   GSG     A KL  S +   ++    ++ A    R+     
Sbjct: 166 IRALEKTVQSGDTVIDVGTGSGVLSIAAAKLGASSVQAYDLDPVAVESAEMNVRLNKTDD 225

Query: 271 LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
           + ++    L      P      L+   L+    +L       +A V   G L 
Sbjct: 226 IVSVGQNSLLEGIEGPV----DLIVANLLAEIILLFPED---AARVVKSGGLF 271


>gi|225559767|gb|EEH08049.1| RNA methylase [Ajellomyces capsulatus G186AR]
          Length = 452

 Score = 36.5 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 7/64 (10%)

Query: 43  IFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL 102
           I  DPPY +       R    ++ +  D +       ++DA     L    R L P+G +
Sbjct: 309 IICDPPYGV-------REGLKVLGSKDDGYIAPKRPYSFDAMLDDILDFAARTLVPDGRI 361

Query: 103 WVIG 106
            +  
Sbjct: 362 SLWM 365


>gi|156335432|ref|XP_001619580.1| hypothetical protein NEMVEDRAFT_v1g224047 [Nematostella vectensis]
 gi|156203077|gb|EDO27480.1| predicted protein [Nematostella vectensis]
          Length = 377

 Score = 36.5 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 15/128 (11%), Positives = 32/128 (25%)

Query: 73  DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
           D     E Y+ +   W L  R         W   + +             ++  N  ++ 
Sbjct: 25  DNAEQTEKYNWYQYNWYLYNRYQYNWYLYNWYHYNCYLYNWYQYNWYQYYWYKFNWYLYN 84

Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
                         N ++   +     +   Y +N+        +    +   I   S +
Sbjct: 85  WYQYNWYQFNWYQFNWYQYNWYQYNWYQYNWYQYNWYLYNWYQYNWYQYNRTCICTTSIN 144

Query: 193 ERLRNKDG 200
               N  G
Sbjct: 145 STGINTIG 152


>gi|73999116|ref|XP_857311.1| PREDICTED: similar to PRIP-interacting protein PIPMT isoform 2
           [Canis familiaris]
          Length = 330

 Score = 36.5 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 209 PEALLSRI--LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           PE +   I   VS +   DI++D F G G +        +  I I++    ID+A  
Sbjct: 151 PEKIAEHIAGRVSQSFKCDIVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARN 207


>gi|117925889|ref|YP_866506.1| MT-A70 family protein [Magnetococcus sp. MC-1]
 gi|117609645|gb|ABK45100.1| MT-A70 family protein [Magnetococcus sp. MC-1]
          Length = 401

 Score = 36.5 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 47/134 (35%), Gaps = 16/134 (11%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
           ++ +++ +   LP      I  DPP+ +Q   +  RPD    D  T S  + +  +    
Sbjct: 217 VRADALKM--DLPDGKYRTIIIDPPWPMQKVERDQRPDQVGFDYPTMSEVELADLD---- 270

Query: 84  FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
                      +      L++  +   +     +++   F  +  +VW K      F   
Sbjct: 271 --------VGGLAHEECHLFLWTTQKFLPMAMRLMEKWGFPYIFQMVWHKPGGFQPFGLP 322

Query: 144 RFQNAHETLIWASP 157
           ++    E +++   
Sbjct: 323 QYNC--EFVLFGRK 334


>gi|332523027|ref|ZP_08399279.1| RNA methyltransferase, RsmD family [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332314291|gb|EGJ27276.1| RNA methyltransferase, RsmD family [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 179

 Score = 36.5 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY 49
           + +  E + +++K ++   L +L   + DLIF DPPY
Sbjct: 85  KMTKSESQFQLLKMDAQQALLQL-DHAFDLIFLDPPY 120


>gi|331269672|ref|YP_004396164.1| putative methyltransferase [Clostridium botulinum BKT015925]
 gi|329126222|gb|AEB76167.1| putative methyltransferase [Clostridium botulinum BKT015925]
          Length = 187

 Score = 36.5 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)

Query: 24  IKGNSISVLEKL--PAKSVDLIFADPPY 49
           +  +S + L+      K  DLIF DPPY
Sbjct: 98  LNMDSYAALKDFAKKNKIFDLIFIDPPY 125


>gi|329954690|ref|ZP_08295750.1| hypothetical protein HMPREF9445_00584 [Bacteroides clarus YIT
           12056]
 gi|328527231|gb|EGF54235.1| hypothetical protein HMPREF9445_00584 [Bacteroides clarus YIT
           12056]
          Length = 500

 Score = 36.5 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 5/87 (5%)

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGSGTSGAVAKKLRR-SFIGIEMKQ 255
           K G+ ++ T     L SRI+     P    ILDP  G+G     A+     +  G ++  
Sbjct: 57  KKGKGIYYTDM--ELSSRIIKFLEIPCGAYILDPCCGTGNFIVSARNSGHENVYGSDIDA 114

Query: 256 DYIDIATKRIASVQPLGNIELTVLTGK 282
           + I +  +R + ++ +  ++     GK
Sbjct: 115 NAIAL-CQRKSGIKNITVLDTLANNGK 140


>gi|328955793|ref|YP_004373126.1| Methyltransferase type 11 [Coriobacterium glomerans PW2]
 gi|328456117|gb|AEB07311.1| Methyltransferase type 11 [Coriobacterium glomerans PW2]
          Length = 232

 Score = 36.5 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 51/150 (34%), Gaps = 11/150 (7%)

Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG--AVAKKLRRSFIGIE 252
             + D +  H      A++ R+        D +LD   G+G               +GI+
Sbjct: 20  TYDDDIKGRHARTLYPAVMERLARLRF---DTVLDIGCGTGAVLDLITRHDPNVRALGID 76

Query: 253 MKQDYIDIATKRIA--SVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQG 310
           + +  +  AT R+A  +   LG+ +                LLV+   +   ++L     
Sbjct: 77  LSERMVQRATDRLAGRAEITLGDAKHLPFDEYAQRLTAPLTLLVDDATLT-FRMLLQRLP 135

Query: 311 NISATVCADGTLISGTELGS---IHRVGAK 337
           ++S     D         GS   IH + + 
Sbjct: 136 SLSDVESPDDPSYEAFHRGSSSWIHDLSSL 165


>gi|300817486|ref|ZP_07097702.1| ribosomal protein L11 methyltransferase [Escherichia coli MS 107-1]
 gi|300529784|gb|EFK50846.1| ribosomal protein L11 methyltransferase [Escherichia coli MS 107-1]
          Length = 293

 Score = 36.5 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    +L  + 
Sbjct: 95  WERKWMDNFHPMRFGERLWICPSWRDVPDENAVNVMLDPGLAFGTGTHPTT---SLCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG       K      IGI++    I  +     + +  G  +
Sbjct: 152 LDSLDLTGKTVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRD---NAERNGVSD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L   + +P      +V   ++
Sbjct: 209 RLELYLPKDQPEEMKADVVVANIL 232


>gi|301094948|ref|XP_002896577.1| glutathione S-transferase C-terminal domain-containing protein,
           putative [Phytophthora infestans T30-4]
 gi|262108971|gb|EEY67023.1| glutathione S-transferase C-terminal domain-containing protein,
           putative [Phytophthora infestans T30-4]
          Length = 362

 Score = 36.5 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 14/95 (14%)

Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
           D     D  +P    +ER RNK  +  +        L RIL     PGD++++   GSG 
Sbjct: 101 DGIHPQDGKLP----AERARNKRQQVDNLAVF----LRRILR----PGDVVVEFCAGSGY 148

Query: 237 SG--AVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
                     +  F+ ++ K+  + IA +RIA+ Q
Sbjct: 149 VALPLACLFPQCKFVLLDKKEPSLAIAKERIAAAQ 183


>gi|118444370|ref|YP_878304.1| methyltransferase [Clostridium novyi NT]
 gi|118134826|gb|ABK61870.1| methyltransferase, putative [Clostridium novyi NT]
          Length = 185

 Score = 36.5 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)

Query: 24  IKGNSISVLEKLPAKS--VDLIFADPPY 49
           +  +S + L+    K    DLIF DPPY
Sbjct: 96  LNMDSYNALKNFAKKKKIFDLIFIDPPY 123


>gi|332075642|gb|EGI86110.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae GA17545]
          Length = 543

 Score = 36.5 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 53/146 (36%), Gaps = 8/146 (5%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGD 225
           N +A+           D++     G++            T+  E L    +  +  K  D
Sbjct: 247 NTNAIFGKEWRTLYGQDFITDQMLGNDYQIAGPAFYQVNTEMAEKLYQTTIDFAELKEDD 306

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           +++D + G GT G    K  +   G+E+  + ++ + K  A +  + N      T +   
Sbjct: 307 VVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSKKN-AQLNHISNTHYVCDTAENAM 365

Query: 286 PRVAFNLLVERGLIQPGQILTNAQGN 311
                N L E   IQP  IL +    
Sbjct: 366 ----KNWLKEG--IQPTVILVDPPRK 385


>gi|325996304|gb|ADZ51709.1| Cyclopropane-fatty-acyl-phospholipid synthase [Helicobacter pylori
           2018]
 gi|325997893|gb|ADZ50101.1| Cyclopropane-fatty-acyl-phospholipid synthase [Helicobacter pylori
           2017]
          Length = 389

 Score = 36.5 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 50/307 (16%), Positives = 98/307 (31%), Gaps = 29/307 (9%)

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM----LQNLNFWILNDIVWRKSNPMPNF 140
            + W     +V+  + +++  G +   F +         ++   +   I     + + + 
Sbjct: 11  FKQWKNGDYQVVFWDNSVYRNGEHSPKFTLKIHRPLKFSDIKKDMSLTIAEAYMDGVIDI 70

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS---------DWLIPICSG 191
            G   +  H   +  +     K  +               +           WL    S 
Sbjct: 71  EGSMDEVMHSLYLQTNYEHLHKHDSAKAVQKPLKESSNISKHYDLGNDFYSIWLDETLSY 130

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG-TSGAVAKKLRRSFIG 250
           S     KD + LH  Q  + L   +     K G+ +LD   G G  S   A++     +G
Sbjct: 131 SCAYFKKDDDTLHAAQL-QKLDHTLKKLHLKQGEKLLDIGCGWGYLSIKAAQEYGAEVMG 189

Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV-AFNLLVERGLI-QPGQILTNA 308
           I +  +    A KR+  +     + + +L  +  + R+  F+ +V  G+    G+     
Sbjct: 190 ITISSEQYKQANKRVQELGLEDKVTIKLLNYQDLDGRLYRFDKVVSVGMFEHVGKDNLPF 249

Query: 309 QGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
                  V   G +        +H +     G    N W   Y    G L S   LR ++
Sbjct: 250 YFKKVKEVLKTGGMFL------LHSILCCFEGKT--NAWVDKYIFPGGYLPS---LREVM 298

Query: 369 RKELYNC 375
              +  C
Sbjct: 299 -SVMSEC 304


>gi|46198867|ref|YP_004534.1| methyltransferase [Thermus thermophilus HB27]
 gi|55980897|ref|YP_144194.1| methyltransferase [Thermus thermophilus HB8]
 gi|46196490|gb|AAS80907.1| methyltransferase [Thermus thermophilus HB27]
 gi|55772310|dbj|BAD70751.1| methyltransferase [Thermus thermophilus HB8]
          Length = 185

 Score = 36.5 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 20/95 (21%)

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK---------RIASV-----QPLGN 273
           LD F GSG  G  A       + +E   + + +  +         R+ ++      P   
Sbjct: 60  LDLFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAK 119

Query: 274 IELTVLTGKRTEPRVA------FNLLVERGLIQPG 302
            +    T     P  A      F  L+  GL++ G
Sbjct: 120 AQGERFTVAFMAPPYAMDLAALFGELLASGLVEAG 154


>gi|186681172|ref|YP_001864368.1| methyltransferase type 11 [Nostoc punctiforme PCC 73102]
 gi|186463624|gb|ACC79425.1| Methyltransferase type 11 [Nostoc punctiforme PCC 73102]
          Length = 441

 Score = 36.5 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 9/135 (6%)

Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSG--TSGAVAKKLRRSFIGIEMKQDYIDI 260
           +H    P  L ++ ++ + +   +ILD   G+G  +            +GI++ ++ I +
Sbjct: 39  IHSLVTPYYLRNQKVIDTKEK--VILDAGCGTGYKSLVLAEANPGAKIVGIDISEESIKL 96

Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVA--FNLLVERGLIQPGQILTNAQGNISATVCA 318
           A +R+       N E  VL   +  P++   F+ +    L+     L  A   + + +  
Sbjct: 97  AQQRLEH-HGFDNAEFHVLPI-QELPKLNYQFDYINCDELLYLFPDLAAALQGMISVLKP 154

Query: 319 DGTLISGTELGSIHR 333
           +G + S     SI R
Sbjct: 155 NGIIRSNLHS-SIQR 168


>gi|326406728|gb|ADZ63799.1| 23S rRNA uracil-5-methyltransferase [Lactococcus lactis subsp.
           lactis CV56]
          Length = 460

 Score = 36.5 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278
           +  KPGD+++D + G GT G           G+E+    ++ A KR A +  L N    V
Sbjct: 309 AGLKPGDVVIDAYSGIGTIGISMADRVAKVYGMEVVPAAVENA-KRNAQLNELENTHYEV 367

Query: 279 LTGKRTEPR 287
            T ++  P+
Sbjct: 368 GTAEKIMPK 376


>gi|239628824|ref|ZP_04671855.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518970|gb|EEQ58836.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 475

 Score = 36.5 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 8/100 (8%)

Query: 224 GDIILDPFFGSGT-SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
            + + D + G GT S  +A+K +    G+E+    I+ A +R A++  + N+E  V    
Sbjct: 328 NETVWDLYCGIGTISLFLAQKAK-KVYGVEIIPQAIEDA-RRNAALNGMDNVEFFV---G 382

Query: 283 RTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
           + E  +      E+  I    I+ +       TVC D  L
Sbjct: 383 KAEEVLPEQY--EKNQIHADVIVVDPPRKGCDTVCLDTIL 420


>gi|52842879|ref|YP_096678.1| N6-adenine specific methylase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629990|gb|AAU28731.1| N6-adenine specific methylase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 181

 Score = 36.5 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
           +IK ++++ L++   +  DLIF DPPY L  
Sbjct: 98  LIKTDTLNYLKQ-STEQFDLIFLDPPYALNY 127


>gi|323474071|gb|ADX84677.1| conserved hypothetical protein [Sulfolobus islandicus REY15A]
          Length = 933

 Score = 36.5 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 51/171 (29%), Gaps = 30/171 (17%)

Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
             DIV          +G       E + W +  P      F   AL   N       D  
Sbjct: 15  FGDIVPEIDKKAEKEKGPGRPVYWEMIFWWTRKPLISARAFTAAALLPEN----YPLDKF 70

Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
             I   SE L +K                + +V+       +LDPF G G+    AK+L+
Sbjct: 71  KMIIRLSEHLPHKS---------------QPIVNDEFKNFTLLDPFAGFGSIPLEAKRLK 115

Query: 246 -RSFIGIEMKQ----------DYIDIATKRIASVQPLGNIELTVLTGKRTE 285
               I  E+            +Y     K I  V+  G   +  L     E
Sbjct: 116 VGKVIASELLPTAYAFLKAVLEYPKYGVKLIEDVKKYGEELIKSLEDDVKE 166


>gi|291392957|ref|XP_002712944.1| PREDICTED: N-6 adenine-specific DNA methyltransferase 2
           (putative)-like [Oryctolagus cuniculus]
          Length = 270

 Score = 36.5 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 29  ISVLEKLPAKSVDLIFADPPY 49
           + + E +PA S D++ ADPPY
Sbjct: 180 LDLPEHIPAHSFDVVVADPPY 200


>gi|219117917|ref|XP_002179744.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408797|gb|EEC48730.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 591

 Score = 36.5 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 16/37 (43%)

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           ++      ++LDPF G+G+            +G ++ 
Sbjct: 324 LAGVGQSSVVLDPFVGTGSILVSCAARGAYCVGTDID 360


>gi|148553125|ref|YP_001260707.1| hypothetical protein Swit_0198 [Sphingomonas wittichii RW1]
 gi|148498315|gb|ABQ66569.1| protein of unknown function DUF1156 [Sphingomonas wittichii RW1]
          Length = 933

 Score = 36.5 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 4/58 (6%)

Query: 209 PEALLSR----ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
            E +L R    I  S       + DPF G G+    A++L     G ++    + I  
Sbjct: 98  NEEVLDRAKAEIRKSCGGELPPVYDPFSGGGSIPLEAQRLGLPAYGSDLNPVAVMIGK 155


>gi|89897679|ref|YP_521166.1| hypothetical protein DSY4933 [Desulfitobacterium hafniense Y51]
 gi|89337127|dbj|BAE86722.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 285

 Score = 36.5 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 8/99 (8%)

Query: 25  KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
           +G+    LE L   S DLI ++PPY  Q       P+ +    +      F        F
Sbjct: 177 QGD---FLEPLRGDSWDLIVSNPPYVTQAEYGELAPELAKEPRMA-----FLGGADGLDF 228

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
            R      R +L+  G + V   +     +  + Q   F
Sbjct: 229 YRELAREARSLLREKGIILVEIGWQQGNSVAELFQQQGF 267


>gi|322391712|ref|ZP_08065179.1| rRNA methylase [Streptococcus peroris ATCC 700780]
 gi|321145422|gb|EFX40816.1| rRNA methylase [Streptococcus peroris ATCC 700780]
          Length = 185

 Score = 36.5 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 26/62 (41%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           +KP  L    L       DI++D   G+G       +L +     ++++  ++  ++R+ 
Sbjct: 2   KKPLELAHDFLAEIINKEDIVVDATMGNGYDTLFLARLAKQVYAFDIQEQALEKTSQRLQ 61

Query: 267 SV 268
             
Sbjct: 62  EA 63


>gi|254779596|ref|YP_003057702.1| Cyclopropane-fatty-acyl-phospholipid synthase (Cyclopropane fatty
           acid synthase) (CFA synthase) [Helicobacter pylori B38]
 gi|254001508|emb|CAX29526.1| Cyclopropane-fatty-acyl-phospholipid synthase (Cyclopropane fatty
           acid synthase) (CFA synthase) [Helicobacter pylori B38]
          Length = 389

 Score = 36.5 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 49/307 (15%), Positives = 96/307 (31%), Gaps = 29/307 (9%)

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM----LQNLNFWILNDIVWRKSNPMPNF 140
            + W     +V+  + +++  G +   F +         ++   +   I     + + + 
Sbjct: 11  FKQWKNGDYQVVFWDNSVYRNGEHSPKFTLKIHRPLKFSDIKKDMSLTIAEAYMDGVIDI 70

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS---------DWLIPICSG 191
            G   +  H   +  +     K                  +           WL    S 
Sbjct: 71  EGSMDEVMHSLYLQTNYEHLHKHDNAKAIQKPIKESSNISKHYDLGNDFYSIWLDETLSY 130

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIG 250
           S     KD + LH  Q  + L   +     K G+ +LD   G G      A++     +G
Sbjct: 131 SCAYFKKDDDTLHAAQL-QKLDHTLKKLHLKQGEKLLDIGCGWGYLSVKAAQEYGAEVMG 189

Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV-AFNLLVERGLI-QPGQILTNA 308
           I +  +    A KR+  +     + + +L  +  + R+  F+ +V  G+    G+     
Sbjct: 190 ITISSEQYKQANKRVQELGLEDRVTIKLLNYQDLDGRLYRFDKVVSVGMFEHVGKDNLPF 249

Query: 309 QGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
                  V   G +        +H +     G    N W   Y    G L S   LR ++
Sbjct: 250 YFKKVKEVLKTGGMFL------LHSILCCFEGKT--NAWVDKYIFPGGYLPS---LREVM 298

Query: 369 RKELYNC 375
              +  C
Sbjct: 299 -SVMSEC 304


>gi|169633173|ref|YP_001706909.1| tRNA(guanine-7)methyltransferase [Acinetobacter baumannii SDF]
 gi|169151965|emb|CAP00826.1| tRNA(guanine-7)methyltransferase [Acinetobacter baumannii]
          Length = 246

 Score = 36.5 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 43/125 (34%), Gaps = 23/125 (18%)

Query: 18  EWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           E K+ +++  ++I +L ++P  S++ +            QLY P         D W K  
Sbjct: 119 ELKNLRVLDADAIQILREMPDNSINCV------------QLYFP---------DPWQKKR 157

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
            F+         +    + L+  GT      +         + +    + N      S P
Sbjct: 158 HFKR-RFVIHERMQLVEQKLELGGTFHAATDWEPYAEWMLDVLDNRPNLENLAGKGNSYP 216

Query: 137 MPNFR 141
            P +R
Sbjct: 217 RPEWR 221


>gi|33866281|ref|NP_897840.1| methyltransferase [Synechococcus sp. WH 8102]
 gi|33639256|emb|CAE08264.1| possible methyltransferase [Synechococcus sp. WH 8102]
          Length = 214

 Score = 36.5 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 19/43 (44%)

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
            P   +LD   GSG + A   +      G+++    + +A +R
Sbjct: 46  NPDAAVLDLCCGSGEAAAPWLEAGYRVTGLDISPRALALAAQR 88


>gi|322828127|gb|EFZ32055.1| hypothetical protein TCSYLVIO_1611 [Trypanosoma cruzi]
          Length = 292

 Score = 36.5 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 49/158 (31%), Gaps = 8/158 (5%)

Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
                 +  +D+  R   P+ +  G    +    L   +   +   Y         A  D
Sbjct: 21  FDAAVVFRRDDVPARPKKPLQDEEGNGTPHDPFRLPLRNEPNENGCYHCFTKRCFCALFD 80

Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQK---PEALLSRILVSSTKPGDIILDPFFGS 234
             +   +    C    +   +     H   K   P  +   + +   K  D   D   G+
Sbjct: 81  RMLNHVYSNLYC----KRITEVAGSRHLCAKSLLPTFVSRMVRLMEVKSEDTFYDLGCGN 136

Query: 235 GTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
           G+    VA       +GIE+ +   ++A     S++P 
Sbjct: 137 GSVLFQVAFLTGARCVGIEISEHNANVAKTAWESLKPQ 174


>gi|320529084|ref|ZP_08030176.1| precorrin-6Y C5,15-methyltransferase, CbiT subunit [Selenomonas
           artemidis F0399]
 gi|320138714|gb|EFW30604.1| precorrin-6Y C5,15-methyltransferase, CbiT subunit [Selenomonas
           artemidis F0399]
          Length = 191

 Score = 36.5 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 56/154 (36%), Gaps = 18/154 (11%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL--RRSFIGIEMKQDYIDIAT 262
           P  K E  +  ++ +   P  ++ D   G+G+    A ++  +     IE   D I +  
Sbjct: 16  PMTKEEIRILTLVKARIAPDAVVYDVGAGTGSISIEAARMAPQGHVYAIEKNPDGIALIA 75

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLI-QPGQILTNAQGNISATVCADGT 321
           +   + +  G   +TV+ G      +A    ++  +I   G+ L +    I A +   G 
Sbjct: 76  E---NAKKFGAENITVVEG-TAPDALADLPALDAAIIGGSGRKLADILDIIGARLRPQGR 131

Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKL 355
           +++                   C   ++++  K 
Sbjct: 132 IVANAITM---------QTVAAC--LDYFHAHKD 154


>gi|311897315|dbj|BAJ29723.1| putative cyclopropane-fatty-acyl-phospholipid synthase
           [Kitasatospora setae KM-6054]
          Length = 461

 Score = 36.5 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 57/163 (34%), Gaps = 26/163 (15%)

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGT-SGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
             L+ R      +PG  +LD   G G+     A+      +G+ +  + + +A +RIA  
Sbjct: 190 LDLICR--KLGLRPGMRLLDVGCGWGSLVLHAARHYGVEAVGVSISTEQVALARQRIAEA 247

Query: 269 QPLGNIELTVLTGKRTEPRVAFNLLVERGL---IQPGQILTNAQGNISATVCADGTLISG 325
             L +     L   R  P   F+ +   G+   +   Q L     ++   +   G L++ 
Sbjct: 248 -GLADRVDVRLQDYREIPDGPFDAISSVGMAEHVGSAQYLV-YARHLHDLLAPGGRLLN- 304

Query: 326 TELGSIHRVGAKVSGSETCNGWNF-------WYFEKLGELHSI 361
                 H++  +        G  +        Y    GEL  +
Sbjct: 305 ------HQIARR----PLPPGETYRLSPFIDRYVFPDGELSPV 337


>gi|223044364|ref|ZP_03614398.1| ribosomal protein L11 methyltransferase [Staphylococcus capitis
           SK14]
 gi|222442233|gb|EEE48344.1| ribosomal protein L11 methyltransferase [Staphylococcus capitis
           SK14]
          Length = 312

 Score = 36.5 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 46/132 (34%), Gaps = 9/132 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD-----GEKLHPTQKPEALLS 214
            A  +   +   KA+N    + S       +  E     D     G   HPT    ++  
Sbjct: 108 WANEWKNYFHPFKASNRFTIVPSWETYTKENSDELCIELDPGMAFGTGDHPTT---SMCL 164

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATKRIASVQPLGN 273
           + +    +P D I+D   GSG     +  +    I  +++ +  +++A +     +    
Sbjct: 165 KAIEEYVQPTDSIIDVGTGSGILSIASHLVGVKRIKALDIDEMAVNVAKENFKKNRCEDA 224

Query: 274 IELTVLTGKRTE 285
           IE       + E
Sbjct: 225 IEAVPGNLLKEE 236


>gi|169841892|ref|ZP_02875001.1| hypothetical protein cdivTM_32335 [candidate division TM7
           single-cell isolate TM7a]
          Length = 35

 Score = 36.5 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 17/27 (62%), Positives = 23/27 (85%)

Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPE 210
           W IP+C+G+ERL++ +G KLH TQKPE
Sbjct: 2   WNIPVCNGNERLKDTNGNKLHSTQKPE 28


>gi|74313788|ref|YP_312207.1| ribosomal protein L11 methyltransferase [Shigella sonnei Ss046]
 gi|123616021|sp|Q3YWZ0|PRMA_SHISS RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|73857265|gb|AAZ89972.1| methylase for 50S ribosomal subunit protein L11 [Shigella sonnei
           Ss046]
 gi|323165220|gb|EFZ51010.1| ribosomal protein L11 methyltransferase [Shigella sonnei 53G]
          Length = 293

 Score = 36.5 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 49/144 (34%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    +L  + 
Sbjct: 95  WEREWMDNFHPMRFGERLWICPSWRDVPDENAVNVMLDPGLAFGTGTHPTT---SLCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G I++D   GSG       K      IGI++    I  +     + +  G  +
Sbjct: 152 LDSLDLTGKIVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRD---NAERNGVSD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L   + +P      +V   ++
Sbjct: 209 RLELYLPKDQPEEMKADVVVANIL 232


>gi|291531045|emb|CBK96630.1| Methyltransferase domain [Eubacterium siraeum 70/3]
          Length = 249

 Score = 36.5 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
             RI+ S      I+LD   G+G+       L    IG+++  + + +A +     +P  
Sbjct: 27  YDRIITSHGGKRGILLDLACGTGSMSMQFSALGYDVIGVDLSTEMLSVAKE-----KPHK 81

Query: 273 NIEL 276
           NIE 
Sbjct: 82  NIEY 85


>gi|46852026|gb|AAT02709.1| hypothetical rhabdomyosarcoma antigen MU-RMS-40.15 [Homo sapiens]
          Length = 578

 Score = 36.5 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 209 PEALLSRI--LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PE +   I   VS +   D+++D F G G +           I I++    + IA  R
Sbjct: 399 PEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDP--VKIALAR 454


>gi|18977089|ref|NP_578446.1| putative methyltransferase [Pyrococcus furiosus DSM 3638]
 gi|18892732|gb|AAL80841.1| putative methyltransferase [Pyrococcus furiosus DSM 3638]
          Length = 174

 Score = 36.5 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 4/92 (4%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           P   L  ++       DI++D   G+G       KL R    I++  + ++   KR+   
Sbjct: 14  PIEPLVELIRERIPKRDILVDFGAGTGYFTLPLAKLFREVYAIDINAERLEYLRKRLKE- 72

Query: 269 QPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
                I    L      P V  +L++   +I 
Sbjct: 73  ---EGITNVKLILGDKLPDVKADLILLSNVIH 101


>gi|15673160|ref|NP_267334.1| hypothetical protein L193873 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|50401787|sp|Q9CGB9|YLJE_LACLA RecName: Full=Uncharacterized RNA methyltransferase yljE
 gi|12724144|gb|AAK05276.1|AE006350_3 conserved hypothetical protein [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 460

 Score = 36.5 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278
           +  KPGD+++D + G GT G           G+E+    ++ A KR A +  L N    V
Sbjct: 309 AGLKPGDVVIDAYSGIGTIGISMADRVAKVYGMEVVPAAVENA-KRNAQLNELENTHYEV 367

Query: 279 LTGKRTEPR 287
            T ++  P+
Sbjct: 368 GTAEKIMPK 376


>gi|150392237|ref|YP_001322286.1| putative RNA methylase [Alkaliphilus metalliredigens QYMF]
 gi|149952099|gb|ABR50627.1| putative RNA methylase [Alkaliphilus metalliredigens QYMF]
          Length = 379

 Score = 36.5 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 61/178 (34%), Gaps = 7/178 (3%)

Query: 75  FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
           F++ E+    T  WL    RVL   G  +   ++  +F     L   + WI  D ++   
Sbjct: 40  FTADESAICRTNLWLRTADRVLIKIGQ-FKATTFDELFEKTKAL-PWHEWIPKDGIFPVD 97

Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN---EDVQMRSDWLIPICSG 191
                 +     N    +  A        Y   +          E   ++    + + + 
Sbjct: 98  GKSIKSQLASVPNCQSIVKKAVVEKLKSKYHTEWFEETKGTYRIEVGILKDVVTLTMDTT 157

Query: 192 SERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIIL-DPFFGSGTSGAVAKKLRRS 247
              L  +   KL +     E L + ++  S    D +L DPF GSGT    A  + R+
Sbjct: 158 GAGLHKRGYRKLANQAPLKETLAAALIQLSFWNPDRVLIDPFCGSGTIPIEAALIGRN 215


>gi|323705003|ref|ZP_08116579.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535429|gb|EGB25204.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 453

 Score = 36.5 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 8/101 (7%)

Query: 212 LLSRILVSSTKPGD-IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
           L  + L  +   GD I+ D + G GT      K  R   GIE+  D ++ A +  A++  
Sbjct: 293 LYEKALEYADLKGDEIVFDVYCGIGTISIFFAKHARKVYGIEVIPDAVEDARQN-AAING 351

Query: 271 LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
           + N E      +          L  +G ++P  I+ +    
Sbjct: 352 VNNAEFIAGKAEDI-----MIELCNKG-LKPDVIVFDPPRK 386


>gi|253748446|gb|EET02554.1| RNA methylase, putative [Giardia intestinalis ATCC 50581]
          Length = 490

 Score = 36.5 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 205 PTQKPEAL-LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           PT     L      V+  KPGDI+ DPF G+ +    A       +G ++ 
Sbjct: 244 PTSMDHELAFIMCEVAGVKPGDIVCDPFVGTCSILISAACYGCITVGGDLN 294


>gi|41529824|ref|NP_956510.2| tRNA guanosine-2'-O-methyltransferase TRM11 homolog [Danio rerio]
 gi|33329805|gb|AAQ10288.1| putative RNA methylase [Danio rerio]
          Length = 466

 Score = 36.5 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            KP D++ DPF G+G+             G ++ 
Sbjct: 215 VKPNDLVYDPFVGTGSLLVACSHFGAYVCGTDID 248


>gi|330951793|gb|EGH52053.1| 23S rRNA m(2)G2445 methyltransferase [Pseudomonas syringae Cit 7]
          Length = 562

 Score = 36.5 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 48/133 (36%), Gaps = 24/133 (18%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           F  K+++ +G+ ++ L+    +  DLIF DPP         +     +        D+  
Sbjct: 448 FSDKNRLEQGDVMAWLQANRDEY-DLIFIDPP--------TFSNSKRMEGIFDVQRDQVE 498

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             +          LA  R L P G L+    + N FR   + +NL      + +  ++  
Sbjct: 499 LID----------LAMAR-LAPGGVLY----FSNNFRKFVLDENLGQRYAVEDINAQTID 543

Query: 137 MPNFRGRRFQNAH 149
               R  +   A 
Sbjct: 544 QDFARNGKIHRAW 556


>gi|319778581|ref|YP_004129494.1| Ribosomal protein L11 methyltransferase [Taylorella equigenitalis
           MCE9]
 gi|317108605|gb|ADU91351.1| Ribosomal protein L11 methyltransferase [Taylorella equigenitalis
           MCE9]
          Length = 307

 Score = 36.5 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 12/130 (9%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYI 258
           G   H T    +L +  + S+      +LD   GSG    +AKK + +  +G+++ +  +
Sbjct: 150 GTGSHATT---SLCAEWIYSNNVEDKSLLDYGCGSGILAIIAKKYKANPVVGVDIDEQAV 206

Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
           + A   + S Q    IE          P   +++++   L  P ++L      +SA V  
Sbjct: 207 ETAK--LNSKQNQTEIEFYEPN---EFPDGQYDIVIANILSNPLKLLAPM---LSARVKD 258

Query: 319 DGTLISGTEL 328
            G L+    L
Sbjct: 259 GGNLVLSGIL 268


>gi|315302817|ref|ZP_07873577.1| gp44 [Listeria ivanovii FSL F6-596]
 gi|313628808|gb|EFR97181.1| gp44 [Listeria ivanovii FSL F6-596]
          Length = 151

 Score = 36.5 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 21/70 (30%), Gaps = 10/70 (14%)

Query: 35  LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
               S  L+  DPP         +         +   + K  S   +          C R
Sbjct: 55  FEDNSFHLVVFDPP---------HLLKAGDKSWLAKKYGKLDSV-TWQEDIAKGFSECMR 104

Query: 95  VLKPNGTLWV 104
            LKPNGTL  
Sbjct: 105 ALKPNGTLIF 114


>gi|291557489|emb|CBL34606.1| Methyltransferase domain [Eubacterium siraeum V10Sc8a]
          Length = 249

 Score = 36.5 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
             RI+ S      I+LD   G+G+       L    IG+++  + + +A +     +P  
Sbjct: 27  YDRIITSHGGKRGILLDLACGTGSMSMQFSALGYDVIGVDLSTEMLSVAKE-----KPHK 81

Query: 273 NIEL 276
           NIE 
Sbjct: 82  NIEY 85


>gi|241913349|pdb|3GDH|A Chain A, Methyltransferase Domain Of Human Trimethylguanosine
           Synthase 1 (Tgs1) Bound To M7gtp And
           Adenosyl-Homocysteine (Active Form)
 gi|241913350|pdb|3GDH|B Chain B, Methyltransferase Domain Of Human Trimethylguanosine
           Synthase 1 (Tgs1) Bound To M7gtp And
           Adenosyl-Homocysteine (Active Form)
 gi|241913351|pdb|3GDH|C Chain C, Methyltransferase Domain Of Human Trimethylguanosine
           Synthase 1 (Tgs1) Bound To M7gtp And
           Adenosyl-Homocysteine (Active Form)
          Length = 241

 Score = 36.5 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 209 PEALLSRI--LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PE +   I   VS +   D+++D F G G +           I I++    + IA  R
Sbjct: 62  PEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDP--VKIALAR 117


>gi|193634285|ref|XP_001944138.1| PREDICTED: methyltransferase-like protein 5-like [Acyrthosiphon
           pisum]
          Length = 191

 Score = 36.5 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 226 IILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            + D   GSG     A  L  R + G ++    I ++ +  A    LG  +  +   K+
Sbjct: 54  CVADLGCGSGVLCIGAALLGARYWAGFDIDPSAISLSVENAADRDVLGQCDFILCDVKK 112


>gi|157868409|ref|XP_001682757.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68126213|emb|CAJ03506.1| putative histone-lysine N-methyltransferase [Leishmania major
           strain Friedlin]
          Length = 279

 Score = 36.5 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 9/108 (8%)

Query: 178 VQMRSDWLIP-----ICSGSERLRNKDGEKLHPTQK---PEALLSRILVSSTKPGDIILD 229
                 W          S S +   +  +K     K   P  +   I +++  PG+   D
Sbjct: 62  HTCHCVWFGAQLEHCYASLSLKRETERIKKRELCAKSILPPFVTRLIRIANVAPGETFYD 121

Query: 230 PFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
              G+G+    VA       +G+E+     ++A    A ++P+   + 
Sbjct: 122 LGCGNGSVLFQVAALTGARCVGVEINPHNAEVANAAWAFLRPIFEAQF 169


>gi|159473174|ref|XP_001694714.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158276526|gb|EDP02298.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 292

 Score = 36.5 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 212 LLSRILVSSTKPGD----IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           L  R L     P D    ++LD   GSG SG    +  + ++G+++    +D+A +R
Sbjct: 38  LTERALELLALPQDGLPRLLLDLGCGSGLSGEALSEAGQVWVGLDISAAMLDVAHER 94


>gi|115386848|ref|XP_001209965.1| hypothetical protein ATEG_07279 [Aspergillus terreus NIH2624]
 gi|114190963|gb|EAU32663.1| hypothetical protein ATEG_07279 [Aspergillus terreus NIH2624]
          Length = 2409

 Score = 36.5 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 10/75 (13%), Positives = 31/75 (41%), Gaps = 3/75 (4%)

Query: 252  EMKQDYIDIATKRI---ASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNA 308
            ++   + + A +R+   + +     +++      +     AF+L++   ++     L + 
Sbjct: 1363 DLSPGFFEKAKQRLRPWSDIMTYKKLDVGNDPLAQGFELAAFDLIIASNVLHATPNLFDT 1422

Query: 309  QGNISATVCADGTLI 323
              NI + +   G L+
Sbjct: 1423 LQNIHSLLKPGGKLV 1437


>gi|56421037|ref|YP_148355.1| ribosomal protein L11 methyltransferase [Geobacillus kaustophilus
           HTA426]
 gi|81819664|sp|Q5KWZ9|PRMA_GEOKA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|56380879|dbj|BAD76787.1| ribosomal protein L11 methyltransferase [Geobacillus kaustophilus
           HTA426]
          Length = 312

 Score = 36.5 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 57/152 (37%), Gaps = 22/152 (14%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYI 258
           G   HPT     +  + L    +PGD ++D   GSG     A  L    +  +++    +
Sbjct: 155 GTGTHPTT---VMCLQALEKYVRPGDHVIDVGTGSGILSIAAAMLGAQSVRALDLDPVAV 211

Query: 259 DIATK--RIASVQPLGNIELTVLTGKRTEP--RVAFNLLVE-----RG----LIQPGQIL 305
           D A    ++  VQ +  +    L     EP   +  N+L E      G    L++PG   
Sbjct: 212 DSARLNVKLNKVQHIVTVSQNNLLDHIEEPADVIVANILAEIILRFTGDAYRLLKPGGRF 271

Query: 306 TNA---QGNISATVCADGTLISGTELGSIHRV 334
             +   Q         DG L +G  +  I+ +
Sbjct: 272 ITSGIIQAKKQDV--KDGLLAAGFAIEEINVM 301


>gi|326625131|gb|EGE31476.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 288

 Score = 36.5 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 47/144 (32%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   IP  +    + +     G   HPT    +L  + 
Sbjct: 90  WEREWMDNFHPMRFGERLWICPSWRDIPDENAVNVMLDPGLAFGTGTHPTT---SLCLQW 146

Query: 217 LVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG       K      IGI++    I  +     + +  G  +
Sbjct: 147 LDGLDLNGKTVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRD---NAERNGVSD 203

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L   + +P      +V   ++
Sbjct: 204 RLELYLPKDQPEAMKADVVVANIL 227


>gi|39935289|ref|NP_947565.1| hypothetical protein RPA2220 [Rhodopseudomonas palustris CGA009]
 gi|39649141|emb|CAE27661.1| conserved unknown protein [Rhodopseudomonas palustris CGA009]
          Length = 944

 Score = 36.5 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 10/73 (13%)

Query: 209 PEALLSR----ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK- 263
            E ++ R    I  S       I DPF G G+    A++L     G ++    + I    
Sbjct: 98  NEEVIERARVEIRKSCGGELPPIYDPFSGGGSIPLEAQRLGLPAFGSDLNPVAVMIGKAM 157

Query: 264 -----RIASVQPL 271
                R    +P+
Sbjct: 158 IEIPPRYKDCRPV 170


>gi|284161838|ref|YP_003400461.1| methyltransferase small [Archaeoglobus profundus DSM 5631]
 gi|284011835|gb|ADB57788.1| methyltransferase small [Archaeoglobus profundus DSM 5631]
          Length = 201

 Score = 36.5 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 209 PEALLSRILVSS---TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
           P AL S I+V++   +   ++++D   G+G     +  L    +G ++ ++ + IA +  
Sbjct: 28  PPALASEIVVNAKLISDLDNLVVDLGCGTGILSIASSLLGAEAVGFDIDREALRIARENA 87

Query: 266 ASVQPLGNIELTVLTGKRTEPRVA 289
            +++     +  + + ++   +V 
Sbjct: 88  RAME--VEADFVLCSVEKVYLKVP 109


>gi|271502287|ref|YP_003335313.1| D12 class N6 adenine-specific DNA methyltransferase [Dickeya
           dadantii Ech586]
 gi|270345842|gb|ACZ78607.1| D12 class N6 adenine-specific DNA methyltransferase [Dickeya
           dadantii Ech586]
          Length = 333

 Score = 36.5 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 11/88 (12%)

Query: 7   LAINENQNSIFEWKDKI--IKGNSISVLEKLPAKS---VDLIFADPPYNLQLNGQLYRPD 61
             + +    I E ++ I     + I  L +   K    +D ++ DPPY ++    +Y  D
Sbjct: 183 NTLIKKLERIAEMRNSIFVYNEDCIDFLRRFDHKENYDLDFVYLDPPY-VKEGKNIYSKD 241

Query: 62  HSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
               D        F       +F+  WL
Sbjct: 242 FCFDDFKHKELKDFI-----VSFSNRWL 264


>gi|161616405|ref|YP_001590370.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|224585181|ref|YP_002638980.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|161365769|gb|ABX69537.1| hypothetical protein SPAB_04214 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|224469709|gb|ACN47539.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|321225195|gb|EFX50254.1| Ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
          Length = 288

 Score = 36.5 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 47/144 (32%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   IP  +    + +     G   HPT    +L  + 
Sbjct: 90  WEREWMDNFHPMRFGERLWICPSWRDIPDENAVNVMLDPGLAFGTGTHPTT---SLCLQW 146

Query: 217 LVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG       K      IGI++    I  +     + +  G  +
Sbjct: 147 LDGLDLNGKTVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRD---NAERNGVSD 203

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L   + +P      +V   ++
Sbjct: 204 RLELYLPKDQPEAMKADVVVANIL 227


>gi|87198330|ref|YP_495587.1| tRNA (guanine-N(7))-methyltransferase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|123490922|sp|Q2GBM0|TRMB_NOVAD RecName: Full=tRNA (guanine-N(7)-)-methyltransferase; AltName:
           Full=tRNA(m7G46)-methyltransferase
 gi|87134011|gb|ABD24753.1| tRNA (guanine-N(7)-)-methyltransferase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 238

 Score = 36.5 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 6/18 (33%), Positives = 12/18 (66%)

Query: 22  KIIKGNSISVLEKLPAKS 39
           +I  G+++ VL ++P  S
Sbjct: 114 RIHHGDALEVLRRIPDGS 131


>gi|45198493|ref|NP_985522.1| AFL026Wp [Ashbya gossypii ATCC 10895]
 gi|74693027|sp|Q754U7|MCES_ASHGO RecName: Full=mRNA cap guanine-N7 methyltransferase; AltName:
           Full=mRNA (guanine-N(7)-)-methyltransferase; AltName:
           Full=mRNA cap methyltransferase
 gi|44984444|gb|AAS53346.1| AFL026Wp [Ashbya gossypii ATCC 10895]
          Length = 430

 Score = 36.5 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGA---VAKKLRRSFIGIEMKQDYIDIATKR 264
              A+   ++   T+P D++L+   G G         +     FIGI++  + I  A +R
Sbjct: 144 FNNAIKYMLIDKYTRPRDVVLELGCGKGGDLRKYGACEIS--QFIGIDISNESIREAQRR 201

Query: 265 IASVQPLG 272
             +++ L 
Sbjct: 202 YLNMRDLD 209


>gi|300123040|emb|CBK24047.2| unnamed protein product [Blastocystis hominis]
          Length = 377

 Score = 36.5 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%)

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
              T+ G ++ D F G+G+    A       IG ++ +
Sbjct: 148 QILTQNGSLVWDCFVGTGSLLVAASAHGAFCIGSDIDK 185


>gi|300121335|emb|CBK21715.2| unnamed protein product [Blastocystis hominis]
          Length = 441

 Score = 36.5 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 17/35 (48%)

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            ++PG ++ D F G+G+    +       IG ++ 
Sbjct: 205 LSRPGAVMWDCFAGTGSLLVASTAHGSHCIGTDID 239


>gi|312903696|ref|ZP_07762870.1| hypothetical protein HMPREF9512_01453 [Enterococcus faecalis
           TX0635]
 gi|310632888|gb|EFQ16171.1| hypothetical protein HMPREF9512_01453 [Enterococcus faecalis
           TX0635]
          Length = 420

 Score = 36.5 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 7/86 (8%)

Query: 188 ICSGSERLRNKDGE-KLHPTQKPEALLSRILVSSTKPG---DIILDPFFGSGTSGAVAKK 243
             +  E+  +K      +P + P  +  + L  + +       + D F G GT      K
Sbjct: 19  YWNFGEKDEDKMHRIHTYPAKFPSFITIKALEYAREKKVNVATVGDIFCGCGTVAYEVAK 78

Query: 244 LRRSFIGIEMKQDYIDIAT---KRIA 266
               F G ++      IA    KR+ 
Sbjct: 79  QGYDFWGCDVNPVASLIARVKSKRLE 104


>gi|32266336|ref|NP_860368.1| hypothetical protein HH0837 [Helicobacter hepaticus ATCC 51449]
 gi|32262386|gb|AAP77434.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 250

 Score = 36.5 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 43/127 (33%), Gaps = 19/127 (14%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ--LNGQLY 58
           + +K+++     Q +   +  K+   + +  +        D I  +PP+  Q  + G+  
Sbjct: 65  LVEKDTIMATLAQKNTSIFSGKVHCVDFMDFVAPFK---FDFIITNPPFYTQGAVQGKNQ 121

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
           R + +   +                     L   +RV+KPNG L +         +    
Sbjct: 122 RKNMARHQSFLP--------------LHPMLEQIKRVMKPNGILCMCYDARMCDEVFYGF 167

Query: 119 QNLNFWI 125
           +  +  I
Sbjct: 168 KECDIHI 174


>gi|309810249|ref|ZP_07704094.1| ribosomal protein L11 methyltransferase [Lactobacillus iners SPIN
           2503V10-D]
 gi|308169521|gb|EFO71569.1| ribosomal protein L11 methyltransferase [Lactobacillus iners SPIN
           2503V10-D]
          Length = 310

 Score = 36.5 bits (83), Expect = 6.8,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 74/212 (34%), Gaps = 30/212 (14%)

Query: 150 ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK------L 203
           E  +        +     +      +  + +  +W  P      ++  K   K       
Sbjct: 96  EFKVIQVCDKMWQNQWEKFYHRVDFSRSLAIVPEWECPKPLNPHQIVIKMNPKQAFGTGT 155

Query: 204 H-PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYIDIA 261
           H  TQ    ++ R+L+S       +LD   GSG    VA K    +    ++  D I  A
Sbjct: 156 HITTQLMLMVMERVLLSEMS----VLDVGTGSGILSIVASKFGASNVCATDISDDAIASA 211

Query: 262 TKRIA--SVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
            K +A   +  +   +  +LTG +         L+   ++   +IL     ++S  +  +
Sbjct: 212 KKNLALNDIDNVELKQANLLTGVK-----GKYDLILANML--AEILYQLIPHLSDHLARN 264

Query: 320 GTLISGT---ELGSIHRVGAKVSGSETCNGWN 348
           G++I      E  S      ++    + NG+ 
Sbjct: 265 GSVIMSGIDCEQLS------RIEKLLSKNGFT 290


>gi|225024976|ref|ZP_03714168.1| hypothetical protein EIKCOROL_01865 [Eikenella corrodens ATCC
           23834]
 gi|224942206|gb|EEG23415.1| hypothetical protein EIKCOROL_01865 [Eikenella corrodens ATCC
           23834]
          Length = 314

 Score = 36.5 bits (83), Expect = 6.8,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 21/100 (21%)

Query: 14  NSIFEWKDKIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
           N I   + +II+ +    L+      K  DLI  DPP         +     ++D +   
Sbjct: 196 NRINPEQHRIIRADVFQYLQTAAAEGKRFDLIVMDPP--------SFSNSKKMLDILDIQ 247

Query: 72  WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
            D               +    ++L+P GTL+   +  + 
Sbjct: 248 RDHPR-----------LIREAMQLLEPGGTLYFSNNLRSF 276


>gi|160901890|ref|YP_001567471.1| RNA methyltransferase [Petrotoga mobilis SJ95]
 gi|160359534|gb|ABX31148.1| RNA methyltransferase, TrmA family [Petrotoga mobilis SJ95]
          Length = 387

 Score = 36.5 bits (83), Expect = 6.8,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGT-SGAVAKKLRRSFIGIEMKQDYIDIATK 263
           K   +L +  +S  +  D++ D + G+GT S  +A K +    GIE+ ++ ++ A +
Sbjct: 225 KGTEVLYQTALSYAENSDVVYDFYSGTGTISLLLANKAK-KVYGIEIIKEAVEAAKQ 280


>gi|330808443|ref|YP_004352905.1| RNA methylase [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327376551|gb|AEA67901.1| Putative RNA methylase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 756

 Score = 36.5 bits (83), Expect = 6.9,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 46/133 (34%), Gaps = 24/133 (18%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
           F  K+++ +G+ ++ LE    +  DLIF DPP         +     +        D   
Sbjct: 643 FSDKNRLEQGDVMAWLEASRDEY-DLIFIDPP--------TFSNSKRMEGVFDVQRDHVQ 693

Query: 77  SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
             +          LA  R L P G L+    + N FR   +  NL      + +  K+  
Sbjct: 694 LLD----------LAMAR-LAPGGVLY----FSNNFRKFQLEDNLGERYAVEEITAKTID 738

Query: 137 MPNFRGRRFQNAH 149
               R  +   A 
Sbjct: 739 PDFARNGKIHRAW 751


>gi|257090549|ref|ZP_05584910.1| predicted protein [Enterococcus faecalis CH188]
 gi|256999361|gb|EEU85881.1| predicted protein [Enterococcus faecalis CH188]
 gi|315578700|gb|EFU90891.1| hypothetical protein HMPREF9511_01122 [Enterococcus faecalis
           TX0630]
 gi|327535676|gb|AEA94510.1| methyltransferase [Enterococcus faecalis OG1RF]
          Length = 424

 Score = 36.5 bits (83), Expect = 6.9,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 7/86 (8%)

Query: 188 ICSGSERLRNKDGE-KLHPTQKPEALLSRILVSSTKPG---DIILDPFFGSGTSGAVAKK 243
             +  E+  +K      +P + P  +  + L  + +       + D F G GT      K
Sbjct: 23  YWNFGEKDEDKMHRIHTYPAKFPSFITIKALEYAREKKVNVATVGDIFCGCGTVAYEVAK 82

Query: 244 LRRSFIGIEMKQDYIDIAT---KRIA 266
               F G ++      IA    KR+ 
Sbjct: 83  QGYDFWGCDVNPVASLIARVKSKRLE 108


>gi|226303872|ref|YP_002763830.1| cyclopropane fatty acid synthase [Rhodococcus erythropolis PR4]
 gi|229492597|ref|ZP_04386400.1| cyclopropane-fatty-acyl-phospholipid synthase [Rhodococcus
           erythropolis SK121]
 gi|226182987|dbj|BAH31091.1| putative cyclopropane fatty acid synthase [Rhodococcus erythropolis
           PR4]
 gi|229320583|gb|EEN86401.1| cyclopropane-fatty-acyl-phospholipid synthase [Rhodococcus
           erythropolis SK121]
          Length = 433

 Score = 36.5 bits (83), Expect = 6.9,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 80/249 (32%), Gaps = 26/249 (10%)

Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
           + ++ ++L + +L  I       +P     R++   E L  +        +     +   
Sbjct: 108 LASITRSLGWDLLRPIAPPPQEHLP-----RWRRVAEGLRHSKTRDAEVIHHHYDVSNTF 162

Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL--VSSTKPGDIILDPF 231
               +     +       +E+   +  E  +          R++      + GD +LD  
Sbjct: 163 YEYVLGPSMTYTCAAYDNAEQTLEEAQENKY----------RLVFEKLGLQKGDRLLDIG 212

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFN 291
            G G+    A +     IG+ + ++  D A K I   + L ++     +  R      F+
Sbjct: 213 CGWGSMVRYAARRGVKVIGVTLSREQADWAQKAIED-EGLADLAQVRFSDYRDVAETGFD 271

Query: 292 LLVERGLI-QPGQILTNAQGNI-SATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNF 349
            +   GL    G     A        +   G L++       +R  AK        G+  
Sbjct: 272 AVSSIGLTEHIGVGNYPAYFEFLKGKLREGGRLLNHCITRPDNRSSAKAG------GFID 325

Query: 350 WYFEKLGEL 358
            Y    GEL
Sbjct: 326 RYVFPDGEL 334


>gi|71066286|ref|YP_265013.1| tRNA (guanine-N(7)-)-methyltransferase [Psychrobacter arcticus
           273-4]
 gi|91208051|sp|Q4FQX9|TRMB_PSYA2 RecName: Full=tRNA (guanine-N(7)-)-methyltransferase; AltName:
           Full=tRNA(m7G46)-methyltransferase
 gi|71039271|gb|AAZ19579.1| tRNA (guanine-N(7)-)-methyltransferase [Psychrobacter arcticus
           273-4]
          Length = 273

 Score = 36.5 bits (83), Expect = 6.9,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 22  KIIKGNSISVLEKLPAKSVDLI 43
           KII G++I +L++LP   +D I
Sbjct: 152 KIINGDAIQLLKQLPENHIDRI 173


>gi|293364061|ref|ZP_06610797.1| RNA methyltransferase, RsmD family [Mycoplasma alligatoris A21JP2]
 gi|292552551|gb|EFF41325.1| RNA methyltransferase, RsmD family [Mycoplasma alligatoris A21JP2]
          Length = 182

 Score = 36.5 bits (83), Expect = 6.9,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 226 IILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQ 269
           IILD F GSG+    A        I IE  +    +  K +++++
Sbjct: 45  IILDLFSGSGSWSIEALSRGALKAISIEKNKAAFAVIQKNVSNLK 89


>gi|116054427|ref|YP_790124.1| hypothetical protein PA14_24675 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115589648|gb|ABJ15663.1| hypothetical protein PA14_24675 [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 343

 Score = 36.5 bits (83), Expect = 6.9,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
           F  K +++ G+ +  L +      +LIF DPP
Sbjct: 230 FSDKQRLVHGDVMEWLRE-DDGQYELIFIDPP 260


>gi|229157926|ref|ZP_04285999.1| Ribosomal protein L11 methyltransferase [Bacillus cereus ATCC 4342]
 gi|228625534|gb|EEK82288.1| Ribosomal protein L11 methyltransferase [Bacillus cereus ATCC 4342]
          Length = 312

 Score = 36.5 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 55/173 (31%), Gaps = 26/173 (15%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-------------HPTQKPEALL 213
           ++             SD    + +  E   +   EK+             HPT     + 
Sbjct: 109 DWATAWKKYYHPVQISDTFTIVPTWEEYTPSSPEEKIIELDPGMAFGTGTHPTTT---MC 165

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATK--RIASVQP 270
            R L  + +PG+ I+D   GSG     A KL  S +   ++    ++ A    R+     
Sbjct: 166 IRALEKTVQPGNTIIDVGTGSGVLSIAAAKLGASSVQAYDLDPVAVESAEMNVRLNKTDD 225

Query: 271 LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
           +  +    L      P      L+   L+    +L       +A V   G L 
Sbjct: 226 IVTVGQNSLLEGIEGPV----DLIVANLLAEIILLFPED---AARVVKSGGLF 271


>gi|228987563|ref|ZP_04147681.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229198440|ref|ZP_04325144.1| Ribosomal protein L11 methyltransferase [Bacillus cereus m1293]
 gi|228584943|gb|EEK43057.1| Ribosomal protein L11 methyltransferase [Bacillus cereus m1293]
 gi|228772161|gb|EEM20609.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 312

 Score = 36.5 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 55/173 (31%), Gaps = 26/173 (15%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-------------HPTQKPEALL 213
           ++             SD    + +  E   +   EK+             HPT     + 
Sbjct: 109 DWATAWKKYYHPVQISDTFTIVPTWEEYTPSSPEEKIIELDPGMAFGTGTHPTTT---MC 165

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATK--RIASVQP 270
            R L  + +PG+ I+D   GSG     A KL  S +   ++    ++ A    R+     
Sbjct: 166 IRALEKTVQPGNTIIDVGTGSGVLSIAAAKLGASSVQAYDLDPVAVESAEMNVRLNKTDD 225

Query: 271 LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
           +  +    L      P      L+   L+    +L       +A V   G L 
Sbjct: 226 IVTVGQNSLLEGIEGPV----DLIVANLLAEIILLFPED---AARVVKSGGLF 271


>gi|169404774|pdb|3CC8|A Chain A, Crystal Structure Of A Putative Methyltransferase
           (Bce_1332) From Bacillus Cereus Atcc 10987 At 1.64 A
           Resolution
          Length = 230

 Score = 36.5 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 56/165 (33%), Gaps = 24/165 (14%)

Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
           S    L  +     +    P  LL  I     +    +LD    SG  GA  K+      
Sbjct: 4   SPKNSLYEEKSGHYYNAVNP-NLLKHIKKEWKE----VLDIGCSSGALGAAIKENGTRVS 58

Query: 250 GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR-VAFNLLVERGLIQPGQILTNA 308
           GIE   +  + A +++  V  LG+IE      +  +   V F  ++E         L + 
Sbjct: 59  GIEAFPEAAEQAKEKLDHVV-LGDIETXDXPYEEEQFDCVIFGDVLEH--------LFDP 109

Query: 309 ---QGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNG-WNF 349
                 +   +  +G +++     SI  V      +    G W +
Sbjct: 110 WAVIEKVKPYIKQNGVILA-----SIPNVSHISVLAPLLAGNWTY 149


>gi|47567877|ref|ZP_00238585.1| ribosomal protein L11 methyltransferase [Bacillus cereus G9241]
 gi|47555554|gb|EAL13897.1| ribosomal protein L11 methyltransferase [Bacillus cereus G9241]
          Length = 312

 Score = 36.5 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 55/173 (31%), Gaps = 26/173 (15%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-------------HPTQKPEALL 213
           ++             SD    + +  E   +   EK+             HPT     + 
Sbjct: 109 DWATAWKKYYHPVQISDTFTIVPTWEEYTPSSPEEKIIELDPGMAFGTGTHPTTT---MC 165

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATK--RIASVQP 270
            R L  + +PG+ I+D   GSG     A KL  S +   ++    ++ A    R+     
Sbjct: 166 IRALEKTVQPGNTIIDVGTGSGVLSIAAAKLGASSVQAYDLDPVAVESAEMNVRLNKTDD 225

Query: 271 LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
           +  +    L      P      L+   L+    +L       +A V   G L 
Sbjct: 226 IVTVGQNSLLEGIEGPV----DLIVANLLAEIILLFPED---AARVVKSGGLF 271


>gi|303244608|ref|ZP_07330941.1| protein of unknown function Met10 [Methanothermococcus okinawensis
           IH1]
 gi|302485034|gb|EFL47965.1| protein of unknown function Met10 [Methanothermococcus okinawensis
           IH1]
          Length = 345

 Score = 36.5 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
           ++   K  D+++D F G G      K  +     I++  + I++  K I 
Sbjct: 198 IMEKVKFDDVVVDMFCGVGPFSIACKNAK-KIYAIDINPNAIELLKKNIE 246


>gi|289578109|ref|YP_003476736.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter
           italicus Ab9]
 gi|289527822|gb|ADD02174.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter
           italicus Ab9]
          Length = 308

 Score = 36.5 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 57/171 (33%), Gaps = 18/171 (10%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSSTKPGD 225
           Y       + + ++  W   +  G E +   D      T   E   +   +L     P  
Sbjct: 116 YYKPLKIGKKIVIKPSWEEYVSQGEEIIIELDPGMAFGTGTHETTKMCLELLEEIVMPES 175

Query: 226 IILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK-----RIASVQPLGNIELTVL 279
           I+ D   GSG     + KL  +     ++ +  +++A +      + +V+   +  L   
Sbjct: 176 IVFDIGCGSGILSIASSKLGAKEVYAADIDEVSVEVARQNVELNNLQNVKVFKSDLLNEF 235

Query: 280 TGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGS 330
            GK          ++   +I    ++      +   +  +G  ++   + S
Sbjct: 236 DGK--------ADIIVANII--ADVIIKLSTEVPKYLKEEGLFLASGIIKS 276


>gi|229542669|ref|ZP_04431729.1| RNA methyltransferase, TrmA family [Bacillus coagulans 36D1]
 gi|229327089|gb|EEN92764.1| RNA methyltransferase, TrmA family [Bacillus coagulans 36D1]
          Length = 457

 Score = 36.5 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
            + ++D + G GT      +  R   G+E+  + I+ A KR A++  + N+E    T + 
Sbjct: 310 SETVIDAYCGIGTISLFLAQKARKVFGVEIVPEAIEDA-KRNAALNGITNVEFEAGTAET 368

Query: 284 TEPR 287
             P+
Sbjct: 369 VIPK 372


>gi|297544382|ref|YP_003676684.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842157|gb|ADH60673.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 308

 Score = 36.5 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 57/171 (33%), Gaps = 18/171 (10%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSSTKPGD 225
           Y       + + ++  W   +  G E +   D      T   E   +   +L     P  
Sbjct: 116 YYKPLKIGKKIVIKPSWEEYVSQGEEIIIELDPGMAFGTGTHETTKMCLELLEEIVMPES 175

Query: 226 IILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK-----RIASVQPLGNIELTVL 279
           I+ D   GSG     + KL  +     ++ +  +++A +      + +V+   +  L   
Sbjct: 176 IVFDIGCGSGILSIASGKLGAKEVYAADIDEVSVEVARQNVELNNLQNVKVFKSDLLNEF 235

Query: 280 TGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGS 330
            GK          ++   +I    ++      +   +  +G  ++   + S
Sbjct: 236 DGK--------ADIIVANII--ADVIIKLSTEVPKYLKEEGLFLASGIIKS 276


>gi|256811407|ref|YP_003128776.1| protein of unknown function Met10 [Methanocaldococcus fervens AG86]
 gi|256794607|gb|ACV25276.1| protein of unknown function Met10 [Methanocaldococcus fervens AG86]
          Length = 336

 Score = 36.5 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
            D+++D F G G      K  +     I++    I++  K I 
Sbjct: 196 DDVVVDMFAGVGPFSIACKNAK-KIYAIDINPHAIELLKKNIK 237


>gi|170682751|ref|YP_001745530.1| ribosomal protein L11 methyltransferase [Escherichia coli SMS-3-5]
 gi|226710082|sp|B1LGM4|PRMA_ECOSM RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|170520469|gb|ACB18647.1| ribosomal protein L11 methyltransferase [Escherichia coli SMS-3-5]
          Length = 293

 Score = 36.5 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    +L  + 
Sbjct: 95  WEREWMDNFHPMRFGERLWICPSWRDVPDENAVNVMLDPGLAFGTGTHPTT---SLCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG       K      IGI++    I  +     + +  G  +
Sbjct: 152 LDSLDLTGKTVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRD---NAERNGVSD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L   + +P      +V   ++
Sbjct: 209 RLELYLPKDQPEAMKADVVVANIL 232


>gi|159472140|ref|XP_001694209.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158276872|gb|EDP02642.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 203

 Score = 36.5 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 8/77 (10%)

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGD-----IILDPFFGSGTSGAVAKKLR-RSFIGI 251
           K   + +PT  P  L SR+L +     D      + D   G+      A  L  R  +G+
Sbjct: 20  KTELEQYPT-GPH-LASRLLFTVDNSYDEFAGRTVADLGCGTAMLSIGAALLGARHVVGV 77

Query: 252 EMKQDYIDIATKRIASV 268
           ++  D +++A + I  +
Sbjct: 78  DIDPDALEVAAENIQEI 94


>gi|308273139|emb|CBX29742.1| hypothetical protein N47_F14370 [uncultured Desulfobacterium sp.]
          Length = 187

 Score = 36.5 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG-IE 252
           +L + +G K+ PT          ++S    G ++LD F G+G  G  A     SF   I+
Sbjct: 15  KLFSINGLKIRPTSGRLRESIFNILSDQVVGSVVLDLFAGTGAMGIEALSRGASFAAFID 74

Query: 253 MKQDYIDIATKRI 265
             ++ I    K I
Sbjct: 75  KDKEAISTIIKNI 87


>gi|110799361|ref|YP_696707.1| ribosomal protein L11 methyltransferase [Clostridium perfringens
           ATCC 13124]
 gi|122958752|sp|Q0TNT3|PRMA_CLOP1 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|110674008|gb|ABG82995.1| ribosomal protein L11 methyltransferase [Clostridium perfringens
           ATCC 13124]
          Length = 313

 Score = 36.5 bits (83), Expect = 7.2,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 3/103 (2%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSSTKPG 224
            Y       E + ++  W     +G E +   D      T   E   +  + L    K  
Sbjct: 119 KYYKPIKIGEKIVIKPIWEEYEPTGEEMVVELDPGMAFGTGDHETTRMCVQALDKYVKAD 178

Query: 225 DIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIA 266
             + D   GSG    VA KL  +  +G+++    +D A + I+
Sbjct: 179 TTVFDIGTGSGILALVASKLGAKHVLGVDLDPVAVDSAKENIS 221


>gi|327389388|gb|EGE87733.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae GA04375]
          Length = 451

 Score = 36.5 bits (83), Expect = 7.3,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 53/146 (36%), Gaps = 8/146 (5%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGD 225
           N +A+           D++     G++            T+  E L    +  +  K  D
Sbjct: 247 NTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTTIDFAELKEDD 306

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           +++D + G GT G    K  +   G+E+  + ++ + K  A +  + N      T +   
Sbjct: 307 VVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSKKN-AQLNHISNTHYVCDTAENAM 365

Query: 286 PRVAFNLLVERGLIQPGQILTNAQGN 311
                N L E   IQP  IL +    
Sbjct: 366 ----KNWLKEG--IQPTVILVDPPRK 385


>gi|325475432|gb|EGC78613.1| hypothetical protein HMPREF9353_00194 [Treponema denticola F0402]
          Length = 236

 Score = 36.5 bits (83), Expect = 7.3,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 13/107 (12%)

Query: 18  EWKDKI-IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY-------RPDHSLVDAVT 69
           + KD +    ++  +++ +   S D+++ DPPYN +     Y       R +   V  V 
Sbjct: 83  DLKDNLCFNSDANELVKNI---SADVVYIDPPYNSRQYSDAYHLVENIARWEKPDVHGVA 139

Query: 70  DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
              D+ S    Y   TR+   A   ++      +++ SY+N+ + G 
Sbjct: 140 KKMDRSSIKSKY--CTRSAPKAFEDLISDIKAKYIVVSYNNMAKKGN 184


>gi|229493864|ref|ZP_04387637.1| O-methyltransferase, family 3 [Rhodococcus erythropolis SK121]
 gi|229319251|gb|EEN85099.1| O-methyltransferase, family 3 [Rhodococcus erythropolis SK121]
          Length = 209

 Score = 36.5 bits (83), Expect = 7.3,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 20/39 (51%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
            +   ++ I   + ++I G ++ VL +L     DL+F D
Sbjct: 94  KLTFRESGIAPARTRLINGRALDVLPRLADGGYDLVFVD 132


>gi|226307646|ref|YP_002767606.1| methyltransferase [Rhodococcus erythropolis PR4]
 gi|226186763|dbj|BAH34867.1| putative methyltransferase [Rhodococcus erythropolis PR4]
          Length = 211

 Score = 36.5 bits (83), Expect = 7.3,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 20/39 (51%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
            +   ++ I   + ++I G ++ VL +L     DL+F D
Sbjct: 96  KLTFRESGIAPARTRLINGRALDVLPRLADGGYDLVFVD 134


>gi|16519218|gb|AAL25125.1|AF431889_1 type IIs modification methyltransferase M.AlwI [Acinetobacter
           lwoffii]
          Length = 608

 Score = 36.5 bits (83), Expect = 7.3,   Method: Composition-based stats.
 Identities = 49/252 (19%), Positives = 94/252 (37%), Gaps = 53/252 (21%)

Query: 4   KNSLAINEN---QNSIFEWKDKIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLY 58
           KN   ++E+     SI   K +I+  + + VLE    P    DLIF DPPY         
Sbjct: 120 KNPKILDEDNLRAASILLSKAQIVCSDYLDVLENFAGPN---DLIFLDPPY--------- 167

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
                 +   +D   K  + E +       L    + L   G+   + + ++     +++
Sbjct: 168 ----VPISEYSDF--KRYTKEQFYLEDHENLAKAYKALSDKGSHVFLTNSNH-----SIV 216

Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
           +NL      +++  K +   + + R+ ++     +  S + K + ++ N + +    E  
Sbjct: 217 ENLYHGFKYEVIQTKRHISCDSKTRKGED-----VIISNTQKNEKFSLNLEKIATLPEK- 270

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL-DPFFGSGTS 237
                  I +   +  + +K           + LL  IL    +    IL D F GSG  
Sbjct: 271 -------IKLYPSTRYMGSK-----------QKLLPYILGVVEQFNSPILVDLFSGSGIV 312

Query: 238 GAVAKKLRRSFI 249
             + K L +  I
Sbjct: 313 SYLFKTLGKQVI 324


>gi|10197646|gb|AAG14959.1|AF182423_1 MDS024 [Homo sapiens]
 gi|119568510|gb|EAW48125.1| chromosome 6 open reading frame 75, isoform CRA_b [Homo sapiens]
 gi|119568511|gb|EAW48126.1| chromosome 6 open reading frame 75, isoform CRA_b [Homo sapiens]
          Length = 257

 Score = 36.5 bits (83), Expect = 7.3,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 13/34 (38%)

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            K  DI+ DPF G+G              G ++ 
Sbjct: 213 VKENDIVFDPFVGTGGLLIACAHFGAYVYGTDID 246


>gi|330801730|ref|XP_003288877.1| hypothetical protein DICPUDRAFT_79644 [Dictyostelium purpureum]
 gi|325081070|gb|EGC34600.1| hypothetical protein DICPUDRAFT_79644 [Dictyostelium purpureum]
          Length = 216

 Score = 36.5 bits (83), Expect = 7.3,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 3/82 (3%)

Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA-VA 241
           +W  P     + L N+       T    ++   + +SST   DIILD   G G      A
Sbjct: 9   EWAQPFLDVEDPLPNQ--ICPFATTSEISIKRMLEISSTTKDDIILDMGCGDGRIVIYAA 66

Query: 242 KKLRRSFIGIEMKQDYIDIATK 263
           K      IG+++  D I +A +
Sbjct: 67  KHFGIRSIGLDINPDLIKLAKE 88


>gi|325969375|ref|YP_004245567.1| DNA methylase N-4/N-6 domain-containing protein [Vulcanisaeta
           moutnovskia 768-28]
 gi|323708578|gb|ADY02065.1| DNA methylase N-4/N-6 domain-containing protein [Vulcanisaeta
           moutnovskia 768-28]
          Length = 524

 Score = 36.5 bits (83), Expect = 7.3,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 226 IILDPFFGSGTSGAVAKKL--RRSFIGIEMKQDYIDIATKRIASV 268
           I++DPF GSG + +    L   +  I IE+ +   ++  K ++S+
Sbjct: 52  IVMDPFAGSGATLSAINDLIKPKKVIAIEINKGPCELTRKILSSL 96


>gi|304440023|ref|ZP_07399916.1| modification methylase FokI [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371515|gb|EFM25128.1| modification methylase FokI [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 340

 Score = 36.5 bits (83), Expect = 7.3,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 57/165 (34%), Gaps = 16/165 (9%)

Query: 5   NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY-------NLQLNGQL 57
           N+L +     SI     +    +S  ++E +     DL + DPPY       N  +   +
Sbjct: 179 NNLELKNVDFSINNSVGQAYNEDSNKLIENIKT---DLAYFDPPYNQRQYLPNYHVLETI 235

Query: 58  YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH-----NIF 112
            + D   +  VT   D       Y     +   A   ++K   + ++I SY+     +  
Sbjct: 236 AKYDAPRIKGVTGLRDYSEQKSDYCR-KDSVFNAFEDLIKKTNSRYIILSYNTEGLLSHD 294

Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
            I ++L+        D  +       N    + +N  E L +   
Sbjct: 295 EIISILEKYGKQSTVDYKFIHYKRYKNAHTNKNKNLKEILYFVEK 339


>gi|288800827|ref|ZP_06406284.1| RNA methyltransferase, RsmD family [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288332288|gb|EFC70769.1| RNA methyltransferase, RsmD family [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 181

 Score = 36.5 bits (83), Expect = 7.4,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 23  IIKGNSISVLEKLPAKSVDLIFADPPYNLQ 52
           +I+G+    L+    ++ DLIFADPPY L+
Sbjct: 96  LIRGDVFRYLKSCR-ETFDLIFADPPYALK 124


>gi|225445168|ref|XP_002284097.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297738789|emb|CBI28034.3| unnamed protein product [Vitis vinifera]
          Length = 220

 Score = 36.5 bits (83), Expect = 7.4,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 226 IILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIA 261
           ++ D   G GT G  A  L     IG+++    ++IA
Sbjct: 51  VVADFGCGCGTLGVAAALLGAEHVIGLDIDPQSLEIA 87


>gi|28374227|gb|AAH46012.1| Trmt11 protein [Danio rerio]
          Length = 384

 Score = 36.5 bits (83), Expect = 7.4,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            KP D++ DPF G+G+             G ++ 
Sbjct: 215 VKPNDLVYDPFVGTGSLLVACSHFGAYVCGTDID 248


>gi|321312046|ref|YP_004204333.1| hypothetical protein BSn5_03370 [Bacillus subtilis BSn5]
 gi|320018320|gb|ADV93306.1| hypothetical protein BSn5_03370 [Bacillus subtilis BSn5]
          Length = 247

 Score = 36.5 bits (83), Expect = 7.4,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 21/135 (15%)

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL----- 271
           + +S      ILD   G+G       +      GI++ ++ +  A ++++S QP+     
Sbjct: 26  IEASLPEKGRILDLACGTGEISIRLAEKGFEVTGIDLSEEMLSFAQQKVSSSQPILFLQQ 85

Query: 272 GNIELTVLTGKRTEPRV---------AFNLLVER-----GLIQP-GQILTNAQGNIS-AT 315
              E+T   G+     +           N ++E       +++P G +L +   +   A 
Sbjct: 86  DMREITGFDGQFDAVVICCDSLNYLKTKNDVIETFKSVFRVLKPEGILLFDVHSSYKIAE 145

Query: 316 VCADGTLISGTELGS 330
           V  D T     E  S
Sbjct: 146 VFPDSTFADQDEDIS 160


>gi|299782949|gb|ADJ40947.1| Protein-(Glutamine-N5) methyltransferase, release factor-specific
           [Lactobacillus fermentum CECT 5716]
          Length = 283

 Score = 36.5 bits (83), Expect = 7.4,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 21/113 (18%)

Query: 20  KDKIIKGNSI-----SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
            ++ + G ++      +  +L  +  DLI  +PPY + L         S +D +     +
Sbjct: 156 TNQRLHGTNLNQVESDLFARLGDQRFDLIVTNPPY-VAL---------SEIDEMDPEVLE 205

Query: 75  FSSF------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
           +         E   AF R    A    L P G L+    +    RI  +L+ L
Sbjct: 206 YEPPLALFASENGLAFYRRLFAAAGEHLTPRGVLFGETGHRQEERIQRLLKEL 258


>gi|261403248|ref|YP_003247472.1| protein of unknown function Met10 [Methanocaldococcus vulcanius M7]
 gi|261370241|gb|ACX72990.1| protein of unknown function Met10 [Methanocaldococcus vulcanius M7]
          Length = 265

 Score = 36.5 bits (83), Expect = 7.4,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 47/120 (39%), Gaps = 20/120 (16%)

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR----- 264
            A+  +++ ++ K G++I D   GSG    ++ K  +    IE+     + A +      
Sbjct: 26  LAIFKKVIENTLKGGEVIYDLGTGSGILAMMSAKKAKKVYAIELDPFTYEYAKENVYING 85

Query: 265 IASVQPLGNIELTVLTGKR--------------TEPRVA-FNLLVERGLIQPGQILTNAQ 309
             +++ +          ++              TEP+V   N +++RG ++    +   +
Sbjct: 86  FKNIEVIEGDASLYNFKEKADVIIAELLDTALITEPQVNVLNSIIKRGYLKENAKIIPQK 145


>gi|157363643|ref|YP_001470410.1| hypothetical protein Tlet_0780 [Thermotoga lettingae TMO]
 gi|157314247|gb|ABV33346.1| conserved hypothetical protein [Thermotoga lettingae TMO]
          Length = 256

 Score = 36.5 bits (83), Expect = 7.4,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 15/28 (53%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADP 47
           K ++I  +    +  LP  S D+++ DP
Sbjct: 154 KIELIHADFKQFIRSLPDNSYDIVYCDP 181


>gi|256763144|ref|ZP_05503724.1| N6-adenine-specific methylase [Enterococcus faecalis T3]
 gi|256684395|gb|EEU24090.1| N6-adenine-specific methylase [Enterococcus faecalis T3]
          Length = 184

 Score = 36.5 bits (83), Expect = 7.5,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 6/116 (5%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           +I    G  RL+  DG+   PT          ++     G + LD + GSG     A   
Sbjct: 3   VISGEYGGRRLKALDGDNTRPTTDKVKEAIFNMIGPYFDGGMALDLYSGSGGLAIEAVSR 62

Query: 245 RR-SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT-----EPRVAFNLLV 294
                I IE     + +  + IA  +     E+  +   R      E ++ F+L++
Sbjct: 63  GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 118


>gi|325981156|ref|YP_004293558.1| methyltransferase [Nitrosomonas sp. AL212]
 gi|325530675|gb|ADZ25396.1| methyltransferase [Nitrosomonas sp. AL212]
          Length = 184

 Score = 36.5 bits (83), Expect = 7.5,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPA-KSVDLIFADPPYNLQL 53
           A+ EN+  +   + +++  N++  ++     +  D+IF DPPY L L
Sbjct: 86  ALRENKERLQAMQVELLLMNALDFMQS--DVRKFDVIFLDPPYRLDL 130


>gi|253568319|ref|ZP_04845730.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251842392|gb|EES70472.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 245

 Score = 36.5 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 50/132 (37%), Gaps = 15/132 (11%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           +LD   G G     A +     + GI++    ++ A KR  +  PL   +   +     +
Sbjct: 46  VLDLGCGFGWHCIYAIEHGAKCVTGIDISGKMLEEAQKR--NSSPLIEYKCMAIEDFDFQ 103

Query: 286 PRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCN 345
           P   +++++        +   N    +++ + A G+ +   E    H +       +   
Sbjct: 104 PDT-YDIVISSLTFHYLESFINICRKVNSCLTAGGSFVFSVE----HPIFTAYGNQD--- 155

Query: 346 GWNFWYFEKLGE 357
               W++++ G+
Sbjct: 156 ----WHYDQDGK 163


>gi|303271819|ref|XP_003055271.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463245|gb|EEH60523.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 843

 Score = 36.5 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 46/131 (35%), Gaps = 20/131 (15%)

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP--------LGNIEL 276
           D+++DP  G GT    A       +G E+       A   IAS +P        L  I+ 
Sbjct: 373 DVVIDPCCGGGTILHAAWARGHRAVGGELIALNASNARGNIASFRPHMPALHASLLAIDD 432

Query: 277 TVLTGKRTEPRVAFNLLVE-RGLIQPGQILTNAQG----NISATVCADGTLISGTELGSI 331
                   E R     L    GL+ P  ++         + +ATV A     +G E    
Sbjct: 433 DADAPAANEGRGGKRTLDATTGLLSPPPVVLENDATAPTDWAATVKA----TTGRED--- 485

Query: 332 HRVGAKVSGSE 342
            RV A VS   
Sbjct: 486 ARVAAIVSNLP 496


>gi|207110521|ref|ZP_03244683.1| putative type III restriction enzyme M protein [Helicobacter
          pylori HPKX_438_CA4C1]
          Length = 76

 Score = 36.5 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 20 KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD 61
           + +IKGN++  L  L    AK V  I+ DPPYN   +   Y  +
Sbjct: 21 TNYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNYNDN 65


>gi|54295215|ref|YP_127630.1| hypothetical protein lpl2298 [Legionella pneumophila str. Lens]
 gi|53755047|emb|CAH16538.1| hypothetical protein lpl2298 [Legionella pneumophila str. Lens]
          Length = 212

 Score = 36.5 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 8/97 (8%)

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA--LLSRILVSSTKPGDIILDPFFGSGT 236
           Q   D         +     D E LH T  PE   L    L ++ K   I++D F G G 
Sbjct: 14  QQYWDKRYDYFHRFDEGIQTDSEGLH-TVMPEEATLTQAKLFNNAK---IVVDGFCGIGG 69

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATK--RIASVQPL 271
           S     +  +  I IEM    + +A    R+  V+ L
Sbjct: 70  SAIALARTGKKVIAIEMDSVRLAMAKNNARVYGVEHL 106


>gi|71899132|ref|ZP_00681296.1| conserved hypothetical protein [Xylella fastidiosa Ann-1]
 gi|71731126|gb|EAO33193.1| conserved hypothetical protein [Xylella fastidiosa Ann-1]
          Length = 282

 Score = 36.5 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 8/42 (19%)

Query: 26  GNSISVLEKLPAKSVDLIFADPP--------YNLQLNGQLYR 59
           G+    +E LP  SVD I  DPP        Y L+   QL R
Sbjct: 190 GDIGQAIEDLPDASVDAIVHDPPRFSIAGELYALRFYNQLAR 231


>gi|325278899|ref|YP_004251441.1| Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
           [Odoribacter splanchnicus DSM 20712]
 gi|324310708|gb|ADY31261.1| Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
           [Odoribacter splanchnicus DSM 20712]
          Length = 246

 Score = 36.5 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
              +    +LD   G+G     A +   +   GI++ ++ ++I  K++  +     IEL 
Sbjct: 57  IGEQEKGCLLDVACGTGDFSIAAHRAGVKQVTGIDISENMVEIGKKKVGDLHLADAIELK 116

Query: 278 VLTGKRTE 285
               +  E
Sbjct: 117 TGDCEHME 124


>gi|307611227|emb|CBX00878.1| hypothetical protein LPW_25811 [Legionella pneumophila 130b]
          Length = 212

 Score = 36.5 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 8/97 (8%)

Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA--LLSRILVSSTKPGDIILDPFFGSGT 236
           Q   D         +     D E LH T  PE   L    L ++ K   I++D F G G 
Sbjct: 14  QQYWDKRYDYFHRFDEGIQTDSEGLH-TVMPEEAALTQAKLFNNAK---IVVDGFCGIGG 69

Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATK--RIASVQPL 271
           S     +  +  I IEM    + +A    R+  V+ L
Sbjct: 70  SAIALARTGKKVIAIEMDSVRLAMAKNNARVYGVEHL 106


>gi|261491661|ref|ZP_05988243.1| putative RNA methylase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261494220|ref|ZP_05990720.1| Putative RNA methylase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261310123|gb|EEY11326.1| Putative RNA methylase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261312676|gb|EEY13797.1| putative RNA methylase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 722

 Score = 36.5 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 20/91 (21%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++ + + +  L +   +  +LIF DPP              S    + +SWD       
Sbjct: 611 HRLFQADCLQWLAECR-ERFELIFVDPP------------TFSNSKRMENSWDVQRDHIE 657

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
                   +   +R+L  +GT+    +    
Sbjct: 658 L-------MKQLKRILTADGTIVFSNNKRGF 681


>gi|254564064|ref|YP_003071159.1| hypothetical protein METDI5751 [Methylobacterium extorquens DM4]
 gi|254271342|emb|CAX27354.1| putative protein-L-isoaspartate O-methyltransferase
           [Methylobacterium extorquens DM4]
          Length = 216

 Score = 36.5 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 19/129 (14%)

Query: 199 DGEKLHPTQKPEALLSRILVSST-KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           DG +  P      LL+R++ +   +PG   LD   G G   A+ ++L    + +E   D 
Sbjct: 60  DGIRAMPAPM---LLARLIQALKIRPGTRALDVGTGYGYGAAMLRQLGAEVVALESDPDL 116

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERG--LIQPGQILTNAQGNISAT 315
           I  A +R+     +G ++  +    +  P   F+ ++  G   I+P  +L          
Sbjct: 117 IAAARERLGDT--VGLVQGALTAPAKGGP---FDAILVEGRVEIRPQALL--------DQ 163

Query: 316 VCADGTLIS 324
           +  DG L+ 
Sbjct: 164 LRDDGRLVC 172


>gi|254362588|ref|ZP_04978684.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Mannheimia haemolytica PHL213]
 gi|153094195|gb|EDN75080.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Mannheimia haemolytica PHL213]
          Length = 719

 Score = 36.5 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 20/91 (21%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
            ++ + + +  L +   +  +LIF DPP              S    + +SWD       
Sbjct: 608 HRLFQADCLQWLAECR-ERFELIFVDPP------------TFSNSKRMENSWDVQRDHIE 654

Query: 81  YDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
                   +   +R+L  +GT+    +    
Sbjct: 655 L-------MKQLKRILTADGTIVFSNNKRGF 678


>gi|327478831|gb|AEA82141.1| cyclopropane-fatty-acyl-phospholipid synthase [Pseudomonas stutzeri
           DSM 4166]
          Length = 393

 Score = 36.5 bits (83), Expect = 7.7,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 10/128 (7%)

Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIASV 268
             L+ R L    KPGD +LD   G G      A++      GI + ++ + +A +R+A+ 
Sbjct: 147 LRLICRKLRL--KPGDRLLDVGCGWGGLARFAAREFGARVFGITLSREQLALARERVAAE 204

Query: 269 QPLGNIELTVLTGKRTEPRVAFNLLVERGLI----QPGQILTNAQGNISATVCADGTLIS 324
                ++L ++  +       F+ +V  G+          L      +   V   G L+ 
Sbjct: 205 GLQDQVQLELMDYRDLPQDERFDKVVSVGMFEHVGHANLPLYCQ--RLFGAVRPGG-LVL 261

Query: 325 GTELGSIH 332
              + S H
Sbjct: 262 NHGITSRH 269


>gi|297617814|ref|YP_003702973.1| ribosomal protein L11 methyltransferase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297145651|gb|ADI02408.1| ribosomal protein L11 methyltransferase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 308

 Score = 36.5 bits (83), Expect = 7.7,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK 263
           ++         ++D   GSG     A KL  R  I +++    + +A +
Sbjct: 162 LIEKYVSKDMTLIDIGTGSGILAIAAAKLGARRIIALDLDPVAVQVAKE 210


>gi|296388457|ref|ZP_06877932.1| 23S rRNA m(2)G2445 methyltransferase [Pseudomonas aeruginosa PAb1]
          Length = 464

 Score = 36.5 bits (83), Expect = 7.7,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 17  FEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
           F  K +++ G+ +  L +      +LIF DPP
Sbjct: 351 FSDKQRLVHGDVMEWLRE-DDGQYELIFIDPP 381


>gi|326202056|ref|ZP_08191926.1| ribosomal protein L11 methyltransferase [Clostridium papyrosolvens
           DSM 2782]
 gi|325987851|gb|EGD48677.1| ribosomal protein L11 methyltransferase [Clostridium papyrosolvens
           DSM 2782]
          Length = 316

 Score = 36.5 bits (83), Expect = 7.7,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 3/111 (2%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSSTKPG 224
            Y       + + ++  W      G+E +   D      T   E   + S +L    K  
Sbjct: 116 KYYKPLQLTDRIVIKPTWEDYSTKGNEIIIQMDPGMAFGTGTHETTQMCSILLDKYMKDD 175

Query: 225 DIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATKRIASVQPLGNI 274
             +LD   G+G    +A KL    +  I++ +  + +A + I   +    +
Sbjct: 176 TQVLDIGCGTGILSIIAAKLGAKTVEAIDIDEVAVKVAKENIELNEETSKV 226


>gi|170731099|ref|YP_001776532.1| hypothetical protein Xfasm12_2036 [Xylella fastidiosa M12]
 gi|167965892|gb|ACA12902.1| conserved hypothetical protein [Xylella fastidiosa M12]
          Length = 282

 Score = 36.5 bits (83), Expect = 7.7,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 26  GNSISVLEKLPAKSVDLIFADPP 48
           G+    +E LP  SVD I  DPP
Sbjct: 190 GDIGQAIEDLPDASVDAIVHDPP 212


>gi|51892573|ref|YP_075264.1| site-specific DNA-methyltransferase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51856262|dbj|BAD40420.1| site-specific DNA-methyltransferase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 347

 Score = 36.5 bits (83), Expect = 7.7,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 37/81 (45%), Gaps = 8/81 (9%)

Query: 13  QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
              +    +++  G++  +++++     D+++ DPPYN     + Y  ++ +++ +   W
Sbjct: 195 PQVVESEANRVYCGDADHLIDRME---ADVLYLDPPYNS----RQYIDNYHVLENIA-RW 246

Query: 73  DKFSSFEAYDAFTRAWLLACR 93
           +K   +     F R  L +  
Sbjct: 247 EKPRLYGKTRKFARDGLKSAY 267


>gi|71275112|ref|ZP_00651399.1| conserved hypothetical protein [Xylella fastidiosa Dixon]
 gi|71899670|ref|ZP_00681823.1| conserved hypothetical protein [Xylella fastidiosa Ann-1]
 gi|71163921|gb|EAO13636.1| conserved hypothetical protein [Xylella fastidiosa Dixon]
 gi|71730538|gb|EAO32616.1| conserved hypothetical protein [Xylella fastidiosa Ann-1]
          Length = 282

 Score = 36.5 bits (83), Expect = 7.7,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 26  GNSISVLEKLPAKSVDLIFADPP 48
           G+    +E LP  SVD I  DPP
Sbjct: 190 GDIGQAIEDLPDASVDAIVHDPP 212


>gi|303240625|ref|ZP_07327140.1| Methyltransferase type 11 [Acetivibrio cellulolyticus CD2]
 gi|302591862|gb|EFL61595.1| Methyltransferase type 11 [Acetivibrio cellulolyticus CD2]
          Length = 226

 Score = 36.5 bits (83), Expect = 7.8,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 38/81 (46%), Gaps = 1/81 (1%)

Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           ++ S     + +LD   GSG    +  K     IGI++   ++ IA  +  + + + NI+
Sbjct: 31  LVKSMPNKRNQVLDIGCGSGNKSILLSKYFEHVIGIDISDSFLQIAEHK-KNAKGIKNIQ 89

Query: 276 LTVLTGKRTEPRVAFNLLVER 296
              +  ++ +    F++++ R
Sbjct: 90  FINMDAEKMDFSEKFDMIISR 110


>gi|260774827|ref|ZP_05883729.1| ribosomal RNA small subunit methyltransferase D [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260609252|gb|EEX35407.1| ribosomal RNA small subunit methyltransferase D [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 199

 Score = 36.5 bits (83), Expect = 7.8,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 1/100 (1%)

Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
               + +        +I       +L   D E L PT           ++   P    LD
Sbjct: 6   QQNTSQKKPSTGFVRIISGLWRGRKLPVHDAEGLRPTTDRVKETLFNWLAQDVPQAKCLD 65

Query: 230 PFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
            F GSG  G   A +   +   IE+  +  +   K IA++
Sbjct: 66  LFAGSGGLGFEAASRQADNVTMIELNPNAFNQLEKNIAAL 105


>gi|227514468|ref|ZP_03944517.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Lactobacillus fermentum ATCC 14931]
 gi|260663283|ref|ZP_05864174.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Lactobacillus fermentum 28-3-CHN]
 gi|227087154|gb|EEI22466.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Lactobacillus fermentum ATCC 14931]
 gi|260552135|gb|EEX25187.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Lactobacillus fermentum 28-3-CHN]
          Length = 283

 Score = 36.5 bits (83), Expect = 7.8,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 21/113 (18%)

Query: 20  KDKIIKGNSI-----SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
            ++ + G ++      +  +L  +  DLI  +PPY + L         S +D +     +
Sbjct: 156 TNQRLHGTNLNQVESDLFARLGDQRFDLIVTNPPY-VAL---------SEIDEMDPEVLE 205

Query: 75  FSSF------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
           +         E   AF R    A    L P G L+    +    RI  +L+ L
Sbjct: 206 YEPPLALFASENGLAFYRRLFAAAGEHLTPRGVLFGETGHRQEERIQQLLKEL 258


>gi|195394858|ref|XP_002056056.1| GJ10432 [Drosophila virilis]
 gi|194142765|gb|EDW59168.1| GJ10432 [Drosophila virilis]
          Length = 491

 Score = 36.5 bits (83), Expect = 7.8,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 19/37 (51%)

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            +  + GD++ DPF G+G+    A K     +G ++ 
Sbjct: 209 QAMVRDGDLVFDPFVGTGSLLVSAAKFGGYVLGADID 245


>gi|167037800|ref|YP_001665378.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116219|ref|YP_004186378.1| 50S ribosomal protein L11 methyltransferase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|226710124|sp|B0KA79|PRMA_THEP3 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|166856634|gb|ABY95042.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929310|gb|ADV79995.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 308

 Score = 36.5 bits (83), Expect = 7.8,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 58/168 (34%), Gaps = 12/168 (7%)

Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALLSRILVSSTKPGD 225
           Y       + + ++  W   +  G E +   D      T   E   +    L     P  
Sbjct: 116 YYKPLKIGKKIVIKPSWEEYVSQGEEIIIELDPGMAFGTGTHETTKMCLEFLEDIVMPES 175

Query: 226 IILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATK--RIASVQPLGNIELTVLTGK 282
           I+ D   GSG     + KL  +     ++ +  +++A +   + ++Q +   +  +L+  
Sbjct: 176 IVFDVGCGSGILSITSSKLGAKEVYAADIDEVSVEVARQNVELNNLQNVKVFKSDLLSEF 235

Query: 283 RTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGS 330
           R         ++   +I    ++      +   +  +G  ++   + S
Sbjct: 236 R-----GKADIIVANII--ADVIIKLSAEVPKYLKEEGLFLASGIIKS 276


>gi|114561462|ref|YP_748975.1| putative methyltransferase [Shewanella frigidimarina NCIMB 400]
 gi|114332755|gb|ABI70137.1| putative methyltransferase [Shewanella frigidimarina NCIMB 400]
          Length = 199

 Score = 36.5 bits (83), Expect = 7.8,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 3   QKNSLAINENQNSIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPPY 49
           QKN+    +   +  + ++ ++I  + + VL K      D++F DPP+
Sbjct: 83  QKNAANQLKQNLATLQCQNAEVINADCLQVLAKGTPGGFDIVFIDPPF 130


>gi|254443974|ref|ZP_05057450.1| hypothetical protein VDG1235_2213 [Verrucomicrobiae bacterium
           DG1235]
 gi|198258282|gb|EDY82590.1| hypothetical protein VDG1235_2213 [Verrucomicrobiae bacterium
           DG1235]
          Length = 456

 Score = 36.1 bits (82), Expect = 7.9,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQ--DYIDIATK 263
           Q         +  + KPGD+++D   GSG     A +   R    IE+     Y +   K
Sbjct: 28  QTRCESFRAAIQEAVKPGDVVVDLGTGSGLLAFFAVQAGARKVYAIELGPIVRYAERIAK 87

Query: 264 R 264
           R
Sbjct: 88  R 88


>gi|168245214|ref|ZP_02670146.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194451138|ref|YP_002047411.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|226710109|sp|B4TJV7|PRMA_SALHS RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|194409442|gb|ACF69661.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205336024|gb|EDZ22788.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 293

 Score = 36.1 bits (82), Expect = 7.9,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 47/144 (32%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   IP  +    + +     G   HPT    +L  + 
Sbjct: 95  WEREWMDNFHPMRFGERLWICPSWRDIPDENAVNVMLDPGLAFGTGTHPTT---SLCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG       K      IGI++    I  +     + +  G  +
Sbjct: 152 LDGLDLNGKTVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRD---NAERNGVSD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L   + +P      +V   ++
Sbjct: 209 RLELYLPKDQPEAMKADVVVANIL 232


>gi|116254219|ref|YP_770057.1| hypothetical protein RL4490 [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115258867|emb|CAK09975.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 215

 Score = 36.1 bits (82), Expect = 7.9,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 37/119 (31%), Gaps = 17/119 (14%)

Query: 210 EALLSRILVSSTKPGDI-ILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIAS 267
           + L   +L          +LD   GSG  G  A     R  +  ++   + + A  R+ +
Sbjct: 61  QGLARYVLDHPKTVRGKRVLDFASGSGLVGIAAVMAGAREVMAADIDP-WAEAAV-RLNA 118

Query: 268 VQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN-----ISATVCADGT 321
                N      TG            V+  ++  G +  +           A + ADG 
Sbjct: 119 ---EANRVSLGFTGADL-----IGQAVDADIVLAGDVFYDRAFADALVPWFAKLAADGK 169


>gi|298484039|ref|ZP_07002208.1| methyltransferase, UbiE/COQ5 family [Bacteroides sp. D22]
 gi|298269820|gb|EFI11412.1| methyltransferase, UbiE/COQ5 family [Bacteroides sp. D22]
          Length = 245

 Score = 36.1 bits (82), Expect = 8.0,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 50/139 (35%), Gaps = 17/139 (12%)

Query: 227 ILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           +LD   G G     A +       GI++ +  ++ A KR  +  P    +   +     +
Sbjct: 46  VLDLGCGFGWHCVYAIEHGATHVTGIDISEKMLEEARKR--NPSPFIEYQCMAIEDFDFQ 103

Query: 286 PRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCN 345
           P  ++++++        +  T+    I+  +   G  +   E    H +       E   
Sbjct: 104 PD-SYDIVISSLTFHYLESFTDICRKINNCLTPGGAFVFSVE----HPIFTAYGNQE--- 155

Query: 346 GWNFWYFEKLGELH--SIN 362
               W++++ G+     ++
Sbjct: 156 ----WHYDQDGKPIHWPVD 170


>gi|291556131|emb|CBL33248.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium siraeum
           V10Sc8a]
          Length = 493

 Score = 36.1 bits (82), Expect = 8.0,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 27/58 (46%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           T   E L S     +   G  +LD + G+GT G    +  +  IG+E+  + I+ A +
Sbjct: 284 TPCAEQLYSSACDFAEPKGKTVLDLYCGAGTIGLSMARTAKKIIGVEIVPEAIENAKQ 341


>gi|291531341|emb|CBK96926.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium siraeum
           70/3]
          Length = 449

 Score = 36.1 bits (82), Expect = 8.0,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 27/58 (46%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           T   E L S     +   G  +LD + G+GT G    +  +  IG+E+  + I+ A +
Sbjct: 284 TPCAEQLYSSACDFAEPKGKTVLDLYCGAGTIGLSMARTAKKIIGVEIVPEAIENAKQ 341


>gi|187736388|ref|YP_001878500.1| Site-specific DNA-methyltransferase (adenine-specific) [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187426440|gb|ACD05719.1| Site-specific DNA-methyltransferase (adenine-specific) [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 364

 Score = 36.1 bits (82), Expect = 8.0,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 52/151 (34%), Gaps = 16/151 (10%)

Query: 15  SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY-----------RPDHS 63
           S F+ +  I   ++  +  +LP   +D+++ DPPYN    G  Y             + S
Sbjct: 213 SRFDCRYSIHCRDANELAAELPE--MDVVYLDPPYNQHPYGSNYFMLNLLSSYEKPEETS 270

Query: 64  LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNIFRIGTMLQNLN 122
            V  +   W K S++ +      A              L +    + N   +   L  L 
Sbjct: 271 RVSGIPADW-KRSTYNSRQHAPEALFRLLEDCPAKFILLSYSSEGFINYEEMTGFLGRLG 329

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
             +  +  +       NFR  R QN  E L 
Sbjct: 330 HTVTLETPYAAFRGSRNFRN-RPQNVTEFLF 359


>gi|167750197|ref|ZP_02422324.1| hypothetical protein EUBSIR_01171 [Eubacterium siraeum DSM 15702]
 gi|167656759|gb|EDS00889.1| hypothetical protein EUBSIR_01171 [Eubacterium siraeum DSM 15702]
          Length = 493

 Score = 36.1 bits (82), Expect = 8.0,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 27/58 (46%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           T   E L S     +   G  +LD + G+GT G    +  +  IG+E+  + I+ A +
Sbjct: 284 TPCAEQLYSSACDFAEPKGKTVLDLYCGAGTIGLSMARTAKKIIGVEIVPEAIENAKQ 341


>gi|322513141|ref|ZP_08066274.1| adenine-specific DNA methylase [Actinobacillus ureae ATCC 25976]
 gi|322121104|gb|EFX92921.1| adenine-specific DNA methylase [Actinobacillus ureae ATCC 25976]
          Length = 333

 Score = 36.1 bits (82), Expect = 8.0,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 52/153 (33%), Gaps = 20/153 (13%)

Query: 20  KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT---------- 69
           K +I + ++  ++ +   +S D+++ DPPYN +   + Y    +LV              
Sbjct: 183 KFQIFQKDANQLVRQ---QSADVVYLDPPYNSRQYSRFYHVYETLVKWNKPMLSGVAMKP 239

Query: 70  -----DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
                  + + ++   +             V   N       S  N   +  ++  LN  
Sbjct: 240 PAENMSDYCRSTAPTVFADLVANIQAKYIVVSYNNTYFSKSNSSRNKIELQQIVDTLNSR 299

Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
               I  ++        G+   + H+ L++ + 
Sbjct: 300 GQTQIFTQEHRA--FNTGKTEFSNHQELLFITK 330


>gi|296104975|ref|YP_003615121.1| ribosomal protein L11 methyltransferase [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295059434|gb|ADF64172.1| ribosomal protein L11 methyltransferase [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 293

 Score = 36.1 bits (82), Expect = 8.0,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 46/144 (31%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    +L  + 
Sbjct: 95  WEREWMDNFHPMQFGKRLWICPSWREVPDENAVNVMLDPGLAFGTGTHPTT---SLCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG       K      IGI++    I  +     + +  G  +
Sbjct: 152 LDGLDLEGKTVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRD---NAERNGVSD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L     +P      +V   ++
Sbjct: 209 RLELYLPDAQPEAMKADVVVANIL 232


>gi|198245964|ref|YP_002217352.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|226710106|sp|B5FIW1|PRMA_SALDC RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|197940480|gb|ACH77813.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
          Length = 293

 Score = 36.1 bits (82), Expect = 8.0,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 47/144 (32%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   IP  +    + +     G   HPT    +L  + 
Sbjct: 95  WEREWMDNFHPMRFGERLWICPSWRDIPDENAVNVMLDPGLAFGTGTHPTT---SLCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG       K      IGI++    I  +     + +  G  +
Sbjct: 152 LDGLDLNGKTVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRD---NAERNGVSD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L   + +P      +V   ++
Sbjct: 209 RLELYLPKDQPEAMKADVVVANIL 232


>gi|156741589|ref|YP_001431718.1| hypothetical protein Rcas_1608 [Roseiflexus castenholzii DSM 13941]
 gi|156232917|gb|ABU57700.1| protein of unknown function DUF559 [Roseiflexus castenholzii DSM
           13941]
          Length = 1279

 Score = 36.1 bits (82), Expect = 8.0,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 4/81 (4%)

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ----PLG 272
           + S   P   +LDPF G G+    A +L       +     + I    +   Q    P  
Sbjct: 116 IESGKYPPPRVLDPFSGGGSYPLEALRLGCEAYANDYNPVAVLILKATLEYPQQYGRPFA 175

Query: 273 NIELTVLTGKRTEPRVAFNLL 293
            +   +   K +  +     +
Sbjct: 176 GMPEHLWRKKSSRQKAPAGQM 196


>gi|147797617|emb|CAN65004.1| hypothetical protein VITISV_023490 [Vitis vinifera]
          Length = 1255

 Score = 36.1 bits (82), Expect = 8.0,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%)

Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
            L+           +I+LD F G+GT G    +  R   G E+    +  A +
Sbjct: 384 KLIEDCAGLRGDGSEIVLDLFCGTGTIGLTLSRRVRHVYGYEVVAQAVSDARR 436


>gi|116513225|ref|YP_812132.1| hypothetical protein LACR_2602 [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116108879|gb|ABJ74019.1| SAM-dependent methyltransferase [Lactococcus lactis subsp. cremoris
           SK11]
          Length = 211

 Score = 36.1 bits (82), Expect = 8.0,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 24/60 (40%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           K   +   +L       D+++D   G+G       +L       ++++  ++   KR+ +
Sbjct: 3   KQIEMAHWMLKDIINVDDVVVDATMGNGYDTLFLAELGAKVYAFDVQEAALEATEKRLEN 62


>gi|319760735|ref|YP_004124673.1| putative ribosomal RNA small subunit methyltransferase D
           [Candidatus Blochmannia vafer str. BVAF]
 gi|318039449|gb|ADV33999.1| putative ribosomal RNA small subunit methyltransferase D
           [Candidatus Blochmannia vafer str. BVAF]
          Length = 205

 Score = 36.1 bits (82), Expect = 8.1,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 3/30 (10%)

Query: 24  IKGNSISVLEKLPAKSV---DLIFADPPYN 50
           I  + +S L++L   +V   +++F DPP+N
Sbjct: 110 ICTDCVSWLKQLSKNTVTGYNIVFIDPPFN 139


>gi|281337792|gb|EFB13376.1| hypothetical protein PANDA_013430 [Ailuropoda melanoleuca]
          Length = 852

 Score = 36.1 bits (82), Expect = 8.1,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 209 PEALLSRI--LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           PE +   I   VS +   DI++D F G G +        +  I I++    ID+A  
Sbjct: 673 PEKIAEHIAGRVSQSFKCDIVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARN 729


>gi|261838374|gb|ACX98140.1| cyclopropane fatty acid synthase [Helicobacter pylori 51]
          Length = 389

 Score = 36.1 bits (82), Expect = 8.1,   Method: Composition-based stats.
 Identities = 50/307 (16%), Positives = 97/307 (31%), Gaps = 29/307 (9%)

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM----LQNLNFWILNDIVWRKSNPMPNF 140
            + W     +V+  + +++  G +   F +         ++   +   I     + + + 
Sbjct: 11  FKQWKNGDYQVVFWDNSVYRNGEHSPKFTLKIHRPLKFSDIKKDMSLTIAEAYMDGVIDI 70

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS---------DWLIPICSG 191
            G   +  H   +  +     K                  +           WL    S 
Sbjct: 71  EGSMDEMMHSLYLQTNYEHLHKHDGAKAIQKPIKESSNISKHYDLGNDFYSIWLDETLSY 130

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG-TSGAVAKKLRRSFIG 250
           S     KD + LH  Q  + L   +     K G+ +LD   G G  S   A++     +G
Sbjct: 131 SCAYFKKDDDTLHAAQL-QKLDHTLKKLHLKLGEKLLDIGCGWGYLSIKAAQEYGAQVMG 189

Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV-AFNLLVERGLI-QPGQILTNA 308
           I +  +    A KR+  +     + + +L  +  + R+  F+ +V  G+    G+     
Sbjct: 190 ITISSEQYKQANKRVQELGLEDKVTIKLLNYQDLDGRLYRFDKVVSVGMFEHVGKDNLPF 249

Query: 309 QGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
                  V   G +        +H +     G    N W   Y    G L S   LR ++
Sbjct: 250 YFKKVKEVLKRGGMFL------LHSILCCFEGKT--NAWVDKYIFPGGYLPS---LREVM 298

Query: 369 RKELYNC 375
              +  C
Sbjct: 299 -SVMSEC 304


>gi|149196653|ref|ZP_01873707.1| probable sulfatase atsG [Lentisphaera araneosa HTCC2155]
 gi|149140333|gb|EDM28732.1| probable sulfatase atsG [Lentisphaera araneosa HTCC2155]
          Length = 634

 Score = 36.1 bits (82), Expect = 8.1,   Method: Composition-based stats.
 Identities = 34/257 (13%), Positives = 71/257 (27%), Gaps = 25/257 (9%)

Query: 53  LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
                Y  +H   D      D F  ++     ++  +   R+  K       I  + +  
Sbjct: 110 KKNGYYVSNHFKTDYNIGGRDDFDCWDNDKNDSQK-IYGWRKAPKDQAFFCQINIHDSHE 168

Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA-----------SPSPKA 161
                L +        I   K +P      + +    + +                    
Sbjct: 169 SQAFGLIDQTRHDPKQITPFKYHPNTKVMRQNYARYLDKIEDMDRQVGNILKELKKDGLE 228

Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
                 Y +          R  +                ++L PTQKP +++ R++    
Sbjct: 229 NNTIVIYSSDHGGVMFRSKRFIYNSGTHCPLILRIPPKYKELWPTQKPGSVIHRLVSFVD 288

Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD------YIDIATKRIASVQPLGNIE 275
            P             S   A    R F+G E++ +      + + A +RI + + + + +
Sbjct: 289 MPKTW-----LSISQSAIPANFQGRIFLGSEIEPEASFHFSFRERADERIDNARMIRDKD 343

Query: 276 LTVLTGKRTEPRVAFNL 292
              +  K   P V    
Sbjct: 344 FIYI--KNYLPFVPTGQ 358


>gi|220929300|ref|YP_002506209.1| methyltransferase [Clostridium cellulolyticum H10]
 gi|219999628|gb|ACL76229.1| methyltransferase [Clostridium cellulolyticum H10]
          Length = 187

 Score = 36.1 bits (82), Expect = 8.1,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYIDIATKRIASVQPLGNIE 275
           +++   PG  +LD F G+G+ G  A     +  +  +  +  IDI  K +   +     E
Sbjct: 39  IIAPYIPGSNVLDLFAGTGSLGIEALSRGANSAVFCDQNKQSIDIIKKNLQHTKLTEKSE 98


>gi|16762142|ref|NP_457759.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16766678|ref|NP_462293.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29143631|ref|NP_806973.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56415310|ref|YP_152385.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62181891|ref|YP_218308.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|167993970|ref|ZP_02575063.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168239411|ref|ZP_02664469.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168262593|ref|ZP_02684566.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168463380|ref|ZP_02697297.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168822718|ref|ZP_02834718.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194734237|ref|YP_002116331.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197251456|ref|YP_002148307.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197262032|ref|ZP_03162106.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197364240|ref|YP_002143877.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|200387611|ref|ZP_03214223.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205354284|ref|YP_002228085.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207858631|ref|YP_002245282.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213051971|ref|ZP_03344849.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213428300|ref|ZP_03361050.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213580279|ref|ZP_03362105.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213619018|ref|ZP_03372844.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213649886|ref|ZP_03379939.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213853022|ref|ZP_03382554.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|238913537|ref|ZP_04657374.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289824090|ref|ZP_06543687.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|54038878|sp|P67689|PRMA_SALTI RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|54041942|sp|P67688|PRMA_SALTY RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|81309576|sp|Q57J85|PRMA_SALCH RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|81821525|sp|Q5PJW5|PRMA_SALPA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|226710105|sp|B5F7P3|PRMA_SALA4 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|226710107|sp|B5R1C6|PRMA_SALEP RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|226710108|sp|B5REY1|PRMA_SALG2 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|226710111|sp|B5BGT7|PRMA_SALPK RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|226710112|sp|B4TX91|PRMA_SALSV RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|25286109|pir||AD0913 ribosomal protein L11 methyltransferase [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16421944|gb|AAL22252.1| methylation of 50S ribosomal subunit protein L11 [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|16504445|emb|CAD07898.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139266|gb|AAO70833.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56129567|gb|AAV79073.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62129524|gb|AAX67227.1| methylation of 50S ribosomal subunit protein L11 [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|194709739|gb|ACF88960.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195633157|gb|EDX51571.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197095717|emb|CAR61286.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197215159|gb|ACH52556.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197240287|gb|EDY22907.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197287915|gb|EDY27303.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|199604709|gb|EDZ03254.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205274065|emb|CAR39071.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205328117|gb|EDZ14881.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205340930|gb|EDZ27694.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205348491|gb|EDZ35122.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206710434|emb|CAR34792.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|261248546|emb|CBG26384.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267995591|gb|ACY90476.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159932|emb|CBW19451.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312914411|dbj|BAJ38385.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320087831|emb|CBY97595.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|322614524|gb|EFY11454.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618254|gb|EFY15145.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625967|gb|EFY22781.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322626737|gb|EFY23534.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631305|gb|EFY28065.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635428|gb|EFY32142.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322643428|gb|EFY39992.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647268|gb|EFY43766.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649732|gb|EFY46159.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655594|gb|EFY51900.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658376|gb|EFY54641.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664400|gb|EFY60596.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667380|gb|EFY63542.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674628|gb|EFY70720.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675741|gb|EFY71814.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682377|gb|EFY78400.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322684758|gb|EFY80759.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322716381|gb|EFZ07952.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323131745|gb|ADX19175.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323196164|gb|EFZ81324.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323196730|gb|EFZ81875.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204367|gb|EFZ89376.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207715|gb|EFZ92662.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323209995|gb|EFZ94900.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323214290|gb|EFZ99043.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323219033|gb|EGA03539.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323225045|gb|EGA09298.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323230397|gb|EGA14516.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233373|gb|EGA17467.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239410|gb|EGA23460.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242339|gb|EGA26365.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247307|gb|EGA31272.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250397|gb|EGA34281.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256845|gb|EGA40560.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323263871|gb|EGA47390.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264108|gb|EGA47616.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271633|gb|EGA55052.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326629407|gb|EGE35750.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332990241|gb|AEF09224.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 293

 Score = 36.1 bits (82), Expect = 8.1,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 47/144 (32%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   IP  +    + +     G   HPT    +L  + 
Sbjct: 95  WEREWMDNFHPMRFGERLWICPSWRDIPDENAVNVMLDPGLAFGTGTHPTT---SLCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG       K      IGI++    I  +     + +  G  +
Sbjct: 152 LDGLDLNGKTVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRD---NAERNGVSD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L   + +P      +V   ++
Sbjct: 209 RLELYLPKDQPEAMKADVVVANIL 232


>gi|254172832|ref|ZP_04879506.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus sp. AM4]
 gi|214032988|gb|EEB73816.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus sp. AM4]
          Length = 418

 Score = 36.1 bits (82), Expect = 8.2,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +LD + G GT G    K      GIE+    + +A +
Sbjct: 282 VLDLYSGVGTFGVYLAKRGFRVEGIEINPFAVKMANR 318


>gi|83590242|ref|YP_430251.1| hypothetical protein Moth_1395 [Moorella thermoacetica ATCC 39073]
 gi|83573156|gb|ABC19708.1| Protein of unknown function DUF1156 [Moorella thermoacetica ATCC
           39073]
          Length = 194

 Score = 36.1 bits (82), Expect = 8.2,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
               ED       L  I     +  N + EK+  T + E     IL S+      +LDPF
Sbjct: 57  FPTEEDQAKERRRLFRIIEDLVKWENSNNEKVLDTARQE-----ILKSTGGNPPPVLDPF 111

Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
            G G+    A++L       ++    + I 
Sbjct: 112 CGGGSIPLEAQRLGLEAQASDLNPVAVLIT 141


>gi|15612033|ref|NP_223685.1| cyclopocyclopropane fatty acid synthase [Helicobacter pylori J99]
 gi|4155557|gb|AAD06552.1| CYCLOPOCYCLOPROPANE FATTY ACID SYNTHASE [Helicobacter pylori J99]
          Length = 389

 Score = 36.1 bits (82), Expect = 8.2,   Method: Composition-based stats.
 Identities = 50/307 (16%), Positives = 98/307 (31%), Gaps = 29/307 (9%)

Query: 85  TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM----LQNLNFWILNDIVWRKSNPMPNF 140
            + W     +V+  + +++  G +   F +         ++   +   I     + + + 
Sbjct: 11  FKQWKNGDYQVVFWDNSVYRNGEHSPKFTLKIHRPLKFSDIKKDMSLTIAEAYMDGVIDI 70

Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS---------DWLIPICSG 191
            G   +  H   +  +     K  +               +           WL    S 
Sbjct: 71  EGSMDEVMHSLYLQTNYEHLHKHDSAKAVQKPLKESSNISKHYDLGNDFYSIWLDETLSY 130

Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG-TSGAVAKKLRRSFIG 250
           S     KD + LH  Q  + L   +     K G+ +LD   G G  S   A++     +G
Sbjct: 131 SCAYFKKDDDTLHAAQL-QKLDHTLKKLHLKQGEKLLDIGCGWGYLSIKAAQEYGAEVMG 189

Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV-AFNLLVERGLI-QPGQILTNA 308
           I +  +    A KR+  +     + + +L  +  + R+  F+ +V  G+    G+     
Sbjct: 190 ITISSEQYKQANKRVQELGLEDKVTIKLLNYQDLDGRLYRFDKVVSVGMFEHVGKDNLPF 249

Query: 309 QGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
                  V   G +        +H +     G    N W   Y    G L S   LR ++
Sbjct: 250 YFKKVKEVLKRGGMFL------LHSILCCFEGKT--NAWVDKYIFPGGYLPS---LREVM 298

Query: 369 RKELYNC 375
              +  C
Sbjct: 299 -SVMSEC 304


>gi|66810229|ref|XP_638838.1| tRNA guanosine-2'-O-methyltransferase 11 [Dictyostelium discoideum
           AX4]
 gi|74854427|sp|Q54QA6|TRM11_DICDI RecName: Full=tRNA guanosine-2'-O-methyltransferase TRM11 homolog
 gi|60467449|gb|EAL65472.1| tRNA guanosine-2'-O-methyltransferase 11 [Dictyostelium discoideum
           AX4]
          Length = 507

 Score = 36.1 bits (82), Expect = 8.2,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
             K G  +LDPF G+G+   VA       +G ++ 
Sbjct: 227 LVKKGHFVLDPFVGTGSFILVASHFGAQTVGCDID 261


>gi|301777476|ref|XP_002924156.1| PREDICTED: trimethylguanosine synthase-like [Ailuropoda
           melanoleuca]
          Length = 852

 Score = 36.1 bits (82), Expect = 8.2,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 209 PEALLSRI--LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           PE +   I   VS +   DI++D F G G +        +  I I++    ID+A  
Sbjct: 673 PEKIAEHIAGRVSQSFKCDIVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARN 729


>gi|294665549|ref|ZP_06730831.1| ribosomal protein L11 methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604699|gb|EFF48068.1| ribosomal protein L11 methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 306

 Score = 36.1 bits (82), Expect = 8.2,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 61/172 (35%), Gaps = 20/172 (11%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDI----ILDPFFGSGTSGAVAKKLR-RSFIGIEMK 254
           G   H T    AL  R L S    G++    +LD   GSG     A KL     +G++  
Sbjct: 147 GSGTHQTT---ALCLRWLDSLASSGELQGRSVLDFGCGSGILAVAALKLGATRAVGVDND 203

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISA 314
              + +AT    + Q  G      +   + EP   + ++V   L      L +    ++A
Sbjct: 204 PQAL-LATA--DNAQRNGVDAQLAVYMPQDEPVQTYQVVVANILASALDALADT---LAA 257

Query: 315 TVCADGTLISGTELGSIHRVGAKVSGSETCNGW-NFWYFEKLGELHSINTLR 365
            V   G +        +H  G +    +    W      E+  +   I+ +R
Sbjct: 258 RVAPGGRIALSGI---LH--GQEDDLLKRYAPWFEQLRCERDEDWMRIDGVR 304


>gi|294627277|ref|ZP_06705864.1| ribosomal protein L11 methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598516|gb|EFF42666.1| ribosomal protein L11 methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 306

 Score = 36.1 bits (82), Expect = 8.2,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 61/172 (35%), Gaps = 20/172 (11%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDI----ILDPFFGSGTSGAVAKKLR-RSFIGIEMK 254
           G   H T    AL  R L S    G++    +LD   GSG     A KL     +G++  
Sbjct: 147 GSGTHQTT---ALCLRWLDSLASSGELQGRSVLDFGCGSGILAVAALKLGATRAVGVDND 203

Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISA 314
              + +AT    + Q  G      +   + EP   + ++V   L      L +    ++A
Sbjct: 204 PQAL-LATA--DNAQRNGVDAQLAVYMPQDEPVQTYQVVVANILASALDALADT---LAA 257

Query: 315 TVCADGTLISGTELGSIHRVGAKVSGSETCNGW-NFWYFEKLGELHSINTLR 365
            V   G +        +H  G +    +    W      E+  +   I+ +R
Sbjct: 258 RVAPGGRIALSGI---LH--GQEDDLLKRYAPWFEQLRCERDEDWMRIDGVR 304


>gi|242399628|ref|YP_002995053.1| Predicted DNA methylase [Thermococcus sibiricus MM 739]
 gi|242266022|gb|ACS90704.1| Predicted DNA methylase [Thermococcus sibiricus MM 739]
          Length = 363

 Score = 36.1 bits (82), Expect = 8.2,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 6/92 (6%)

Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA-- 266
           P  L   ++  +       LDPF G GT          +  G +     I  A + +   
Sbjct: 174 PPRLARIMINLTEIRQGNFLDPFCGIGTIVQEFVLQGLNAYGSDSNPRAIHGAKENLKWL 233

Query: 267 ----SVQPLGNIELTVLTGKRTEPRVAFNLLV 294
                 +   ++E+  +   +   RV F+ +V
Sbjct: 234 KKEFRTKGSAHLEICDVRKLKRCFRVKFDAIV 265


>gi|158522750|ref|YP_001530620.1| putative methyltransferase [Desulfococcus oleovorans Hxd3]
 gi|158511576|gb|ABW68543.1| putative methyltransferase [Desulfococcus oleovorans Hxd3]
          Length = 207

 Score = 36.1 bits (82), Expect = 8.2,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 1/77 (1%)

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIE 252
           RL +  G  + PT          +     PG  +LD F G+G     A        + I+
Sbjct: 14  RLFSPTGMAIRPTSGRVREALFNIFMHETPGATVLDLFAGTGALAIEALSRGAARAVLID 73

Query: 253 MKQDYIDIATKRIASVQ 269
                + +  K I + +
Sbjct: 74  NTPAALAVIQKNIHACE 90


>gi|15669073|ref|NP_247878.1| hypothetical protein MJ_0883 [Methanocaldococcus jannaschii DSM
           2661]
 gi|3024916|sp|Q58293|TRM5B_METJA RecName: Full=tRNA (guanine-N(1)-)-methyltransferase Trm5b;
           AltName: Full=M1G-methyltransferase; AltName: Full=tRNA
           [GM37] methyltransferase
 gi|258588221|pdb|2ZZN|A Chain A, The Complex Structure Of Atrm5 And Trnacys
 gi|258588222|pdb|2ZZN|B Chain B, The Complex Structure Of Atrm5 And Trnacys
 gi|1499713|gb|AAB98887.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 336

 Score = 36.1 bits (82), Expect = 8.2,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
            D+++D F G G      K  +     I++    I++  K I 
Sbjct: 196 NDVVVDMFAGVGPFSIACKNAK-KIYAIDINPHAIELLKKNIK 237


>gi|260433956|ref|ZP_05787927.1| cyclopropane-fatty-acyl-phospholipid synthase [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417784|gb|EEX11043.1| cyclopropane-fatty-acyl-phospholipid synthase [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 402

 Score = 36.1 bits (82), Expect = 8.3,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 49/148 (33%), Gaps = 7/148 (4%)

Query: 140 FRGRRFQNAHETL-IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
           F G+    A+E L  W   + + +            N+      D  +   S       +
Sbjct: 105 FTGKFLVQAYERLRFWLQRNHRKQARKNISYHYDLGNDFYAAWLDDTMTYSSALFETGQE 164

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDY 257
             EK    +      S +     KPGD +L+   G G      AK+      G+ + Q+ 
Sbjct: 165 SLEKAQIAKY----ASMVDEMGVKPGDHVLEIGCGWGGFAEYAAKERGLRVTGLTISQEQ 220

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTE 285
           +  A +RI     L +     L   R E
Sbjct: 221 LKYARQRIEKA-GLSDRVELKLQDYRDE 247


>gi|302554837|ref|ZP_07307179.1| DUF262 domain-containing protein [Streptomyces viridochromogenes
           DSM 40736]
 gi|302472455|gb|EFL35548.1| DUF262 domain-containing protein [Streptomyces viridochromogenes
           DSM 40736]
          Length = 699

 Score = 36.1 bits (82), Expect = 8.3,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 7/89 (7%)

Query: 287 RVAFNLLVERGLIQPGQILTNA--QGNISATVCADGTLISGTELGSIHRV--GAKVSGSE 342
           R+  + L++ GLI  G +LT +  + +  A +   G ++   +   IH    GA  +   
Sbjct: 613 RIKLSELLDAGLINAGTVLTPSWEEYDHVAAIDDQGRIVLDGQ---IHDTPSGAANAAGA 669

Query: 343 TCNGWNFWYFEKLGELHSINTLRILVRKE 371
             NGW FW  +      S+  LR  + +E
Sbjct: 670 GTNGWTFWLADTPEGQVSLADLRAALSEE 698


>gi|213964420|ref|ZP_03392620.1| RNA methyltransferase, RsmD family [Corynebacterium amycolatum
           SK46]
 gi|213952613|gb|EEB63995.1| RNA methyltransferase, RsmD family [Corynebacterium amycolatum
           SK46]
          Length = 188

 Score = 36.1 bits (82), Expect = 8.3,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 32/94 (34%), Gaps = 22/94 (23%)

Query: 227 ILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           +LD F GSG  G  A     RS + +E   + I    K I +V                 
Sbjct: 48  VLDLFAGSGALGLEAASRGARSVVLVENDPNAIAAIEKNIRTV---------------GH 92

Query: 286 PRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
           P VA +       ++    L  A G     V AD
Sbjct: 93  PDVAVS------PMKVSSYLAGAPGEPFDRVIAD 120


>gi|57208451|emb|CAI42391.1| tRNA methyltransferase 11 homolog (S. cerevisiae) [Homo sapiens]
          Length = 169

 Score = 36.1 bits (82), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 13/34 (38%)

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            K  DI+ DPF G+G              G ++ 
Sbjct: 11  VKENDIVFDPFVGTGGLLIACAHFGAYVYGTDID 44


>gi|320530346|ref|ZP_08031411.1| hypothetical protein HMPREF9555_01500 [Selenomonas artemidis F0399]
 gi|320137406|gb|EFW29323.1| hypothetical protein HMPREF9555_01500 [Selenomonas artemidis F0399]
          Length = 901

 Score = 36.1 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 52/142 (36%), Gaps = 10/142 (7%)

Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
           I     + +  +  R+       +IWAS       +   +   KA  ++ +     L  I
Sbjct: 27  IRHGHPSTLHLWWSRKPTATARAVIWASLIDDPSAHPEQFPTEKAQEKERRR----LFRI 82

Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
                +  N + +++    K E     IL S+      +LDPF G GT    A++L    
Sbjct: 83  LEELVKWENSNDKRVLDAAKAE-----ILTSTDGNPPPLLDPFAGGGTIPLEAQRLGLEA 137

Query: 249 IGIEMKQDYIDIATKRIASVQP 270
              ++    + +  K +  + P
Sbjct: 138 HAHDLNPVAV-MINKAMIEIPP 158


>gi|119713317|gb|ABL97381.1| putative methylase [uncultured marine bacterium EB80_02D08]
          Length = 184

 Score = 36.1 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 1   MSQKNSLAINENQNSIFEWKDK--IIKGNSISVLEK--LPAKSVDLIFADPPYNLQLNGQ 56
           +++KN   + +N   + + KDK  +I  ++   ++K  L    +DLI  DPP+N +   +
Sbjct: 76  LNKKNYSVLTKNIK-LLDIKDKSKVIFKDAFEWIKKNNLSN--IDLILLDPPFNQEYEIK 132

Query: 57  LYRPDHSLVD 66
           L +      D
Sbjct: 133 LLKLLSRKND 142


>gi|328947570|ref|YP_004364907.1| Site-specific DNA-methyltransferase (adenine-specific) [Treponema
           succinifaciens DSM 2489]
 gi|328447894|gb|AEB13610.1| Site-specific DNA-methyltransferase (adenine-specific) [Treponema
           succinifaciens DSM 2489]
          Length = 355

 Score = 36.1 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 22/30 (73%), Gaps = 3/30 (10%)

Query: 21  DKIIKGNSISVLEKLPAKSVDLIFADPPYN 50
           +K+   +S+++L+K+    VD+++ DPPYN
Sbjct: 209 NKVYNDDSMNLLDKIN---VDILYLDPPYN 235


>gi|297799252|ref|XP_002867510.1| hypothetical protein ARALYDRAFT_492065 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313346|gb|EFH43769.1| hypothetical protein ARALYDRAFT_492065 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 617

 Score = 36.1 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 32/100 (32%), Gaps = 16/100 (16%)

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
           L+      D++ D F G G     A ++ +     ++    ++   +             
Sbjct: 435 LLLGFDQNDVVCDVFAGVGPIALAAARIVKRVYANDLNPHAVEFMEQ------------- 481

Query: 277 TVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATV 316
                 + E R+    +  R  I+   + ++ +G     V
Sbjct: 482 -NSVVNKLEKRIEIFNMDGRRFIKA--MFSSEKGRKVTQV 518


>gi|240103955|ref|YP_002960264.1| 23S rRNA (uracil-5-)-methyltransferase (rumA) [Thermococcus
           gammatolerans EJ3]
 gi|239911509|gb|ACS34400.1| 23S rRNA (uracil-5-)-methyltransferase (rumA) [Thermococcus
           gammatolerans EJ3]
          Length = 421

 Score = 36.1 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 14/117 (11%)

Query: 159 PKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK-----LHPTQKPE--- 210
           P+     F+Y      + +          I     +   K+        +HP    +   
Sbjct: 204 PEDFPQYFDYAESIYWSVNRTPSDVSYGEIERFWGKEFIKEELDGTVYLIHPNSFFQTNS 263

Query: 211 ----ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
                LL  +   +   G  +LD + G GT G    +   S  GIE+    +++A +
Sbjct: 264 YGAVELLREVAKRA--EGGRVLDLYSGVGTFGVYLARKGFSVEGIEINPFAVEMANR 318


>gi|237749288|ref|ZP_04579768.1| DNA-methyltransferase [Oxalobacter formigenes OXCC13]
 gi|229380650|gb|EEO30741.1| DNA-methyltransferase [Oxalobacter formigenes OXCC13]
          Length = 287

 Score = 36.1 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 7/68 (10%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEK----LPAKSVDLIFADPPYNLQLNGQLY 58
           +K+ L     + +    K  +   +++ +L+     L  KS  LI+ DPPY ++  G LY
Sbjct: 148 KKDVLKKRIEEIAKLSHKISVYNEDALQLLKNCPTFLKEKS--LIYLDPPYYIKGKG-LY 204

Query: 59  RPDHSLVD 66
           R  +   D
Sbjct: 205 RNFYEHDD 212


>gi|204931176|ref|ZP_03221970.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204319943|gb|EDZ05149.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 293

 Score = 36.1 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 47/144 (32%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   IP  +    + +     G   HPT    +L  + 
Sbjct: 95  WEREWMDNFHPMRFGERLWICPSWRDIPDENAVNVMLDPGLAFGTGTHPTT---SLCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG       K      IGI++    I  +     + +  G  +
Sbjct: 152 LDGLDLNGKTVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRD---NAERNGVSD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L   + +P      +V   ++
Sbjct: 209 RLELYLPKDQPEAMKADVVVANIL 232


>gi|328675865|gb|AEB28540.1| Ribosomal protein L11 methyltransferase [Francisella cf. novicida
           3523]
          Length = 281

 Score = 36.1 bits (82), Expect = 8.5,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 34/111 (30%), Gaps = 4/111 (3%)

Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE--ALL 213
                   + ++Y       +++ +  +W  P           D          E   + 
Sbjct: 78  KDQQWEAAWLYDY-EPIEIGKNIVVYPNWRQPPQDNKHTYIIVDPSIAFGCGNHETTKMC 136

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATK 263
              L         +LD   G+G     A KL   +  GI++  + I+ + K
Sbjct: 137 LEWLEQHVSKDSTVLDYGCGTGVLAIGAVKLGAKYAEGIDIDPNSIESSIK 187


>gi|296328879|ref|ZP_06871390.1| ribosomal RNA small subunit methyltransferase C [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|296154000|gb|EFG94807.1| ribosomal RNA small subunit methyltransferase C [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 223

 Score = 36.1 bits (82), Expect = 8.5,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 14/115 (12%)

Query: 21  DKI---IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           ++I   I+   + V E   +   D+I ++PPY      ++   +H  +           S
Sbjct: 91  NRIEKNIQFECMDVKEYKKSNYFDVIISNPPYMDDNGKKINENEHKAI-----------S 139

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
                      +   +R+LKP G L+ I   H +  I   L   NF +   I   
Sbjct: 140 RHEIKLSLSELISNAKRLLKPIGLLYFIHRTHRLVEIIKTLDKNNFSVKKIIFIY 194


>gi|297570172|ref|YP_003691516.1| RNA methylase [Desulfurivibrio alkaliphilus AHT2]
 gi|296926087|gb|ADH86897.1| putative RNA methylase [Desulfurivibrio alkaliphilus AHT2]
          Length = 286

 Score = 36.1 bits (82), Expect = 8.5,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           PT + E ++  + ++    GD++ D   G G     A  +  S +GIE+  + I  + 
Sbjct: 22  PTPQ-ETVIEMLTMAGVGEGDVVYDLGSGDGRIVITAATMGASGVGIEIDPELIRASK 78


>gi|168233969|ref|ZP_02659027.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194469563|ref|ZP_03075547.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194455927|gb|EDX44766.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205332044|gb|EDZ18808.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 293

 Score = 36.1 bits (82), Expect = 8.5,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 47/144 (32%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   IP  +    + +     G   HPT    +L  + 
Sbjct: 95  WEREWMDNFHPMRFGERLWICPSWRDIPDENAVNVMLDPGLAFGTGTHPTT---SLCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG       K      IGI++    I  +     + +  G  +
Sbjct: 152 LDGLDLNGKTVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRD---NAERNGVSD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L   + +P      +V   ++
Sbjct: 209 RLELYLPKDQPEAMKADVVVANIL 232


>gi|16079615|ref|NP_390439.1| hypothetical protein BSU25610 [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221310486|ref|ZP_03592333.1| hypothetical protein Bsubs1_14006 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314810|ref|ZP_03596615.1| hypothetical protein BsubsN3_13917 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319732|ref|ZP_03601026.1| hypothetical protein BsubsJ_13843 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324010|ref|ZP_03605304.1| hypothetical protein BsubsS_13972 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|1730986|sp|P54458|YQEM_BACSU RecName: Full=Putative methyltransferase yqeM
 gi|1303794|dbj|BAA12450.1| YqeM [Bacillus subtilis]
 gi|2635007|emb|CAB14503.1| conserved hypothetical protein [Bacillus subtilis subsp. subtilis
           str. 168]
          Length = 247

 Score = 36.1 bits (82), Expect = 8.5,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 21/135 (15%)

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL----- 271
           + +S      ILD   G+G       +      GI++ ++ +  A ++++S QP+     
Sbjct: 26  IEASLPEKGRILDLACGTGEISIRLAEKGFEVTGIDLSEEMLSFAQQKVSSSQPILFLQQ 85

Query: 272 GNIELTVLTGKRTEPRV---------AFNLLVER-----GLIQP-GQILTNAQGNIS-AT 315
              E+T   G+     +           N ++E       +++P G +L +   +   A 
Sbjct: 86  DMREITGFDGQFDAVVICCDSLNYLKTKNDVIETFKSVFRVLKPEGILLFDVHSSFKIAE 145

Query: 316 VCADGTLISGTELGS 330
           V  D T     E  S
Sbjct: 146 VFPDSTFADQDEDIS 160


>gi|332999336|gb|EGK18922.1| ribosomal protein L11 methyltransferase [Shigella flexneri K-272]
 gi|333014705|gb|EGK34051.1| ribosomal protein L11 methyltransferase [Shigella flexneri K-227]
          Length = 293

 Score = 36.1 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    +L  + 
Sbjct: 95  WEREWMDNFHPMRFGERLWICPSWRDVPDENAVNVMLDPGLAFGTGTHPTT---SLCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG       K      IGI++    I  +     + +  G  +
Sbjct: 152 LDSLDLTGKTVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRD---NAERNGVSD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L   + +P      +V   ++
Sbjct: 209 RLELYLPKDQPEEMKADVVVANIL 232


>gi|297180135|gb|ADI16358.1| ribosomal protein l11 methylase [uncultured bacterium HF130_01F24]
          Length = 307

 Score = 36.1 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 58/198 (29%), Gaps = 20/198 (10%)

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLS 214
               + +  +++ ++         S    P       + +     G   HPT    +L  
Sbjct: 106 QDWERKWMIDFEPMQFGKRLWICPSWLSPPHPDAVNIILDPGLAFGSGSHPTT---SLCL 162

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYIDIATKRIASVQPLGN 273
             L ++ KP   ++D   GSG        L       ++     I      +        
Sbjct: 163 NWLDTNFKPNMELIDFGCGSGVLAIATALLGASKVYAVDNDPQAITATVSNMLKNSISKE 222

Query: 274 IELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHR 333
           I  T +    + P +  + L+   ++   + L       S  +   G +     L     
Sbjct: 223 IIQTCMP--ESLPTIEADCLI-ANIL--AEPLIELSEKFSQLIKPRGQIALSGIL----- 272

Query: 334 VGAKVSGSETCNGWNFWY 351
              K  G+E    +  W+
Sbjct: 273 ---KEQGNEIILNYKRWF 287


>gi|225856683|ref|YP_002738194.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae P1031]
 gi|225725093|gb|ACO20945.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae P1031]
          Length = 543

 Score = 36.1 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 1/98 (1%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGD 225
           N +A+           D++     G++            T+  E L    +  +  K  D
Sbjct: 247 NTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDD 306

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +++D + G GT G    K  +   G+E+  + ++ + K
Sbjct: 307 VVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKK 344


>gi|225858819|ref|YP_002740329.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae 70585]
 gi|225721367|gb|ACO17221.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae 70585]
          Length = 453

 Score = 36.1 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 1/98 (1%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGD 225
           N +A+           D++     G++            T+  E L    +  +  K  D
Sbjct: 247 NTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDD 306

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +++D + G GT G    K  +   G+E+  + ++ + K
Sbjct: 307 VVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKK 344


>gi|109086422|ref|XP_001084320.1| PREDICTED: trimethylguanosine synthase isoform 2 [Macaca mulatta]
          Length = 855

 Score = 36.1 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 209 PEALLSRI--LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PE +   I   VS +   D+++D F G G +           I I++    + IA  R
Sbjct: 676 PEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDP--VKIALAR 731


>gi|57208454|emb|CAI42394.1| tRNA methyltransferase 11 homolog (S. cerevisiae) [Homo sapiens]
          Length = 458

 Score = 36.1 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 13/34 (38%)

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            K  DI+ DPF G+G              G ++ 
Sbjct: 213 VKENDIVFDPFVGTGGLLIACAHFGAYVYGTDID 246


>gi|94420683|ref|NP_001026882.2| tRNA guanosine-2'-O-methyltransferase TRM11 homolog [Homo sapiens]
 gi|74723330|sp|Q7Z4G4|TRM11_HUMAN RecName: Full=tRNA guanosine-2'-O-methyltransferase TRM11 homolog
 gi|33329797|gb|AAQ10284.1| putative RNA methylase [Homo sapiens]
 gi|119568509|gb|EAW48124.1| chromosome 6 open reading frame 75, isoform CRA_a [Homo sapiens]
          Length = 463

 Score = 36.1 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 13/34 (38%)

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            K  DI+ DPF G+G              G ++ 
Sbjct: 213 VKENDIVFDPFVGTGGLLIACAHFGAYVYGTDID 246


>gi|332824892|ref|XP_003311521.1| PREDICTED: tRNA guanosine-2'-O-methyltransferase TRM11 homolog [Pan
           troglodytes]
          Length = 463

 Score = 36.1 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 13/34 (38%)

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            K  DI+ DPF G+G              G ++ 
Sbjct: 213 VKENDIVFDPFVGTGGLLIACAHFGAYVYGTDID 246


>gi|262037579|ref|ZP_06011035.1| ribosomal protein L11 methyltransferase [Leptotrichia goodfellowii
           F0264]
 gi|261748401|gb|EEY35784.1| ribosomal protein L11 methyltransferase [Leptotrichia goodfellowii
           F0264]
          Length = 310

 Score = 36.1 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 42/122 (34%), Gaps = 3/122 (2%)

Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
           +E           K     Y       E++ ++  W      G+E++   D      T  
Sbjct: 93  YEIYTSECSDDDWKDEWKKYFHTAKITENIVIKPSWDEYEPVGNEKIIEIDPGMAFGTGT 152

Query: 209 PE--ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRI 265
            E  +L    L   +   D +LD   GSG    + KKL      GI++ +   ++  +  
Sbjct: 153 HETTSLCVEFLEKYSGNKDKLLDIGCGSGILMLIGKKLGINKVTGIDIDEKVGEVVKENF 212

Query: 266 AS 267
           A 
Sbjct: 213 AK 214


>gi|257455393|ref|ZP_05620628.1| ribosomal protein L11 methyltransferase [Enhydrobacter aerosaccus
           SK60]
 gi|257447355|gb|EEV22363.1| ribosomal protein L11 methyltransferase [Enhydrobacter aerosaccus
           SK60]
          Length = 302

 Score = 36.1 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 7/103 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  NY  ++ AN    +      P  +    + +     G   H T +   L    
Sbjct: 92  WEREWMKNYHPIECANGLWIVPKWMSPPNPNAINIIMDPGLAFGTGYHATTR---LCIDW 148

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYI 258
           L      G +++D   GSG  G  A  L  +    +++    +
Sbjct: 149 LTEQPLQGKVVIDYGCGSGILGIAALLLGAKQVYAVDIDPQAV 191


>gi|225861011|ref|YP_002742520.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298230452|ref|ZP_06964133.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298255322|ref|ZP_06978908.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298502952|ref|YP_003724892.1| TrmA family tRNA (uracil-5-)-methyltransferase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|225726771|gb|ACO22622.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298238547|gb|ADI69678.1| TrmA family tRNA (uracil-5-)-methyltransferase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|332201499|gb|EGJ15569.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae GA47368]
          Length = 543

 Score = 36.1 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 1/98 (1%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGD 225
           N +A+           D++     G++            T+  E L    +  +  K  D
Sbjct: 247 NTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDD 306

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +++D + G GT G    K  +   G+E+  + ++ + K
Sbjct: 307 VVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKK 344


>gi|225854529|ref|YP_002736041.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae JJA]
 gi|225722765|gb|ACO18618.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae JJA]
          Length = 543

 Score = 36.1 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 1/98 (1%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGD 225
           N +A+           D++     G++            T+  E L    +  +  K  D
Sbjct: 247 NTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDD 306

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +++D + G GT G    K  +   G+E+  + ++ + K
Sbjct: 307 VVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKK 344


>gi|157148837|ref|YP_001456156.1| ribosomal protein L11 methyltransferase [Citrobacter koseri ATCC
           BAA-895]
 gi|166223406|sp|A8AQF7|PRMA_CITK8 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|157086042|gb|ABV15720.1| hypothetical protein CKO_04670 [Citrobacter koseri ATCC BAA-895]
          Length = 293

 Score = 36.1 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 47/144 (32%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    +L  + 
Sbjct: 95  WEREWMDNFHPMRFGERLWICPSWRDVPDENAVNVMLDPGLAFGTGTHPTT---SLCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG       K      IGI++    I  +     + +  G  E
Sbjct: 152 LDGLDLNGKTVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRD---NAERNGVSE 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L   + +P      +V   ++
Sbjct: 209 RLELYLPKDQPEAMKADVVVANIL 232


>gi|148994234|ref|ZP_01823527.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP9-BS68]
 gi|168488850|ref|ZP_02713049.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP195]
 gi|168576242|ref|ZP_02722136.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae MLV-016]
 gi|147927375|gb|EDK78406.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP9-BS68]
 gi|183572483|gb|EDT93011.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP195]
 gi|183577973|gb|EDT98501.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae MLV-016]
 gi|332073360|gb|EGI83839.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae GA17570]
          Length = 543

 Score = 36.1 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 1/98 (1%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGD 225
           N +A+           D++     G++            T+  E L    +  +  K  D
Sbjct: 247 NTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDD 306

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +++D + G GT G    K  +   G+E+  + ++ + K
Sbjct: 307 VVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKK 344


>gi|148984983|ref|ZP_01818226.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP3-BS71]
 gi|147922681|gb|EDK73798.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP3-BS71]
 gi|301799994|emb|CBW32584.1| putative RNA methyltransferase [Streptococcus pneumoniae OXC141]
          Length = 543

 Score = 36.1 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 1/98 (1%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGD 225
           N +A+           D++     G++            T+  E L    +  +  K  D
Sbjct: 247 NTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDD 306

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +++D + G GT G    K  +   G+E+  + ++ + K
Sbjct: 307 VVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKK 344


>gi|28493020|ref|NP_787181.1| ubiquinone/menaquinone biosynthesis methyltransferase [Tropheryma
           whipplei str. Twist]
 gi|28572233|ref|NP_789013.1| ubiquinone/menaquinone methyltransferase [Tropheryma whipplei
           TW08/27]
 gi|54039804|sp|P67065|UBIE_TROW8 RecName: Full=Menaquinone biosynthesis methyltransferase ubiE
 gi|54042288|sp|P67064|UBIE_TROWT RecName: Full=Menaquinone biosynthesis methyltransferase ubiE
 gi|28410364|emb|CAD66750.1| putative ubiquinone/menaquinone methyltransferase [Tropheryma
           whipplei TW08/27]
 gi|28476060|gb|AAO44150.1| ubiquinone/menaquinone biosynthesis methyltransferase [Tropheryma
           whipplei str. Twist]
          Length = 239

 Score = 36.1 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
           +LD   G+G S     +   +  GI++    + IA  R    +   NI   +  G    P
Sbjct: 61  VLDVGAGTGASTRTVARTGAAVTGIDISPRMLQIARNR---CKRFQNITWRLTNGDLPFP 117

Query: 287 RVAFNLLV 294
             +F+ ++
Sbjct: 118 DKSFDAIL 125


>gi|16804092|ref|NP_465577.1| hypothetical protein lmo2053 [Listeria monocytogenes EGD-e]
 gi|224498499|ref|ZP_03666848.1| hypothetical protein LmonF1_01914 [Listeria monocytogenes Finland
           1988]
 gi|224501148|ref|ZP_03669455.1| hypothetical protein LmonFR_01275 [Listeria monocytogenes FSL
           R2-561]
 gi|255030256|ref|ZP_05302207.1| hypothetical protein LmonL_16306 [Listeria monocytogenes LO28]
 gi|16411523|emb|CAD00131.1| lmo2053 [Listeria monocytogenes EGD-e]
          Length = 185

 Score = 36.1 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 42/140 (30%), Gaps = 7/140 (5%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDY 257
            G    PT          ++     GD++LD F GSG  G  A        + I+     
Sbjct: 17  PGNNTRPTTDKVKESLFSIIGPFFDGDMVLDLFAGSGGLGIEALSRGAERAVFIDQAALA 76

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL----LVERGLIQPGQILTNAQG--N 311
           I    + +         E+     +R    +  N     L+        Q L    G   
Sbjct: 77  IKTIRQNLEGCHFTERAEVYRNDAERALKLLHKNEWKFDLIFLDPPYKKQQLEKLIGTLE 136

Query: 312 ISATVCADGTLISGTELGSI 331
               V  +G +I   +  +I
Sbjct: 137 KLELVNENGRIICEHDKEAI 156


>gi|325262190|ref|ZP_08128928.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. D5]
 gi|324033644|gb|EGB94921.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. D5]
          Length = 471

 Score = 36.1 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 210 EALLSRILVSSTKPGDI-ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           E L   +        D+ + D F G+GT G V   + +  IG+E+ ++ ++ A +
Sbjct: 296 EVLYETVREYIGDIQDMTVFDLFSGTGTIGQVLAPVAKQVIGVEIVEEAVEAARE 350


>gi|309807575|ref|ZP_07701527.1| ribosomal protein L11 methyltransferase [Lactobacillus iners
           LactinV 01V1-a]
 gi|308169181|gb|EFO71247.1| ribosomal protein L11 methyltransferase [Lactobacillus iners
           LactinV 01V1-a]
          Length = 289

 Score = 36.1 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 75/213 (35%), Gaps = 21/213 (9%)

Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
           +   I + I   K+  +         ++ E  +        +     +      +  + +
Sbjct: 46  IGIEISDIISQIKAKLLELKNYGFKTDSVEFKVIQVCDKMWQNQWEKFYHRVDFSRSLAI 105

Query: 181 RSDWLIPICSGSERLRNKDGEK------LH-PTQKPEALLSRILVSSTKPGDIILDPFFG 233
             +W  P      ++  K   K       H  TQ    ++ R+L+S       +LD   G
Sbjct: 106 VPEWECPKPLNPHQIVIKMNPKQAFGTGTHITTQLMLMVMERVLLSEMS----VLDVGTG 161

Query: 234 SGTSGAVAKKLRR-SFIGIEMKQDYIDIATKRIA--SVQPLGNIELTVLTGKRTEPRVAF 290
           SG    VA K    +    ++  D I  A K +A   +  +   +  +LTG +       
Sbjct: 162 SGILSIVASKFGASNVCATDISDDAIASAKKNLALNDIDNVELKQANLLTGVK-----GK 216

Query: 291 NLLVERGLIQPGQILTNAQGNISATVCADGTLI 323
             L+   ++   +IL     ++S  +  +G++I
Sbjct: 217 YDLILANML--AEILYQLIPHLSDHLARNGSVI 247


>gi|291320108|ref|YP_003515366.1| DNA methylase [Mycoplasma agalactiae]
 gi|290752437|emb|CBH40408.1| DNA methylase [Mycoplasma agalactiae]
          Length = 182

 Score = 36.1 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 226 IILDPFFGSGTSGAVAK-KLRRSFIGIEMKQDYIDIATKRIASVQ 269
           I+LD F GSG+    A        + +E  ++ + I  + + ++Q
Sbjct: 45  IVLDLFAGSGSMAIEAVSNYAMKAVAVEKDKEAVKIIYENVNALQ 89


>gi|149012968|ref|ZP_01833857.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP19-BS75]
 gi|169832868|ref|YP_001694472.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae Hungary19A-6]
 gi|303255584|ref|ZP_07341635.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae BS455]
 gi|303260473|ref|ZP_07346441.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP-BS293]
 gi|303262830|ref|ZP_07348767.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP14-BS292]
 gi|303265300|ref|ZP_07351210.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae BS397]
 gi|303266507|ref|ZP_07352394.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae BS457]
 gi|303268374|ref|ZP_07354170.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae BS458]
 gi|147763121|gb|EDK70062.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP19-BS75]
 gi|168995370|gb|ACA35982.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae Hungary19A-6]
 gi|301801862|emb|CBW34580.1| putative RNA methyltransferase [Streptococcus pneumoniae INV200]
 gi|302597440|gb|EFL64535.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae BS455]
 gi|302636028|gb|EFL66526.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP14-BS292]
 gi|302638385|gb|EFL68852.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP-BS293]
 gi|302642095|gb|EFL72446.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae BS458]
 gi|302643958|gb|EFL74218.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae BS457]
 gi|302645165|gb|EFL75402.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae BS397]
          Length = 543

 Score = 36.1 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 1/98 (1%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGD 225
           N +A+           D++     G++            T+  E L    +  +  K  D
Sbjct: 247 NTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDD 306

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +++D + G GT G    K  +   G+E+  + ++ + K
Sbjct: 307 VVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKK 344


>gi|197098128|ref|NP_001127452.1| tRNA guanosine-2'-O-methyltransferase TRM11 homolog [Pongo abelii]
 gi|75054946|sp|Q5R962|TRM11_PONAB RecName: Full=tRNA guanosine-2'-O-methyltransferase TRM11 homolog
 gi|55729943|emb|CAH91698.1| hypothetical protein [Pongo abelii]
          Length = 463

 Score = 36.1 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 13/34 (38%)

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            K  DI+ DPF G+G              G ++ 
Sbjct: 213 VKENDIVFDPFVGTGGLLIACAHFGAYVYGTDID 246


>gi|332213797|ref|XP_003256017.1| PREDICTED: trimethylguanosine synthase [Nomascus leucogenys]
          Length = 855

 Score = 36.1 bits (82), Expect = 8.8,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 209 PEALLSRI--LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PE +   I   VS +   D+++D F G G +           I I++    + IA  R
Sbjct: 676 PEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDP--VKIALAR 731


>gi|297170258|gb|ADI21295.1| N6-adenine-specific methylase [uncultured gamma proteobacterium
           HF0010_09F21]
          Length = 184

 Score = 36.1 bits (82), Expect = 8.8,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 45/138 (32%), Gaps = 13/138 (9%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRI--LVSSTKPGDIILDPFFGSGTSGAVAK 242
           +I    GS R++      L PT  PE L  +I   +         LD F GSG+ G  A 
Sbjct: 7   IISGTLGSRRIKTSKNANLKPT--PEKLREKIFSWLKPDIENSECLDLFAGSGSLGIEAI 64

Query: 243 KLRRS-FIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK---RTEPRVAFNLLVERGL 298
                    IE            I+S+  +   +L     +   R      FN++     
Sbjct: 65  SNGAKSCTFIEQNPSLYKNLKDNISSLNVVDKSKLHRTRAEDFVRRFKEKGFNII----F 120

Query: 299 IQPGQILTNAQGNISATV 316
             P     +  G+    V
Sbjct: 121 FDP-PYTRDYYGDFLCKV 137


>gi|315639340|ref|ZP_07894502.1| modification methylase FokI [Campylobacter upsaliensis JV21]
 gi|315480666|gb|EFU71308.1| modification methylase FokI [Campylobacter upsaliensis JV21]
          Length = 351

 Score = 36.1 bits (82), Expect = 8.8,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 12/121 (9%)

Query: 24  IKGNSISVLEKLPAKSVDLIFADPPY-------NLQLNGQLYRPDHSLVDAVTD--SWDK 74
             G+S+ +L+    K +D+++ DPPY       N  L   L R D+  +  V     W +
Sbjct: 209 FCGDSVKILQGFK-KPIDILYLDPPYNQRQYAPNYHLLETLARYDNPNIKGVAGLREWGE 267

Query: 75  FSSF--EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
             S    A  A T+   +A     K     +          I  +L++       +I +R
Sbjct: 268 QKSLFCNAKTALTQLENIAKLPCYKTLALSYNSDGIMQKDSISNLLESFGKVSFCEIPYR 327

Query: 133 K 133
           +
Sbjct: 328 R 328


>gi|297682885|ref|XP_002819134.1| PREDICTED: trimethylguanosine synthase-like [Pongo abelii]
          Length = 853

 Score = 36.1 bits (82), Expect = 8.8,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 209 PEALLSRI--LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PE +   I   VS +   D+++D F G G +           I I++    + IA  R
Sbjct: 674 PEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDP--VKIALAR 729


>gi|289192747|ref|YP_003458688.1| protein of unknown function Met10 [Methanocaldococcus sp. FS406-22]
 gi|288939197|gb|ADC69952.1| protein of unknown function Met10 [Methanocaldococcus sp. FS406-22]
          Length = 336

 Score = 36.1 bits (82), Expect = 8.8,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
            D+++D F G G      K  +     I++    I++  K I 
Sbjct: 196 DDVVVDMFAGVGPFSIACKNAK-KIYAIDINPHAIELLKKNIK 237


>gi|188588342|ref|YP_001919973.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           E3 str. Alaska E43]
 gi|251777708|ref|ZP_04820628.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|188498623|gb|ACD51759.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           E3 str. Alaska E43]
 gi|243082023|gb|EES47913.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 450

 Score = 36.1 bits (82), Expect = 8.8,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 34/76 (44%), Gaps = 7/76 (9%)

Query: 219 SSTKPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATKR-----IASVQPLG 272
             +    ++ D + G+GT G  VA   +   +GIE+ ++ ++ A +      + + + L 
Sbjct: 303 MGSSENKVVFDLYCGTGTIGQIVAPNAK-KVVGIELIEEAVEAAKENAKLNGLNNCEFLA 361

Query: 273 NIELTVLTGKRTEPRV 288
                ++   + +P +
Sbjct: 362 GDVAEIIKTVKDKPDI 377


>gi|187932429|ref|YP_001884796.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           B str. Eklund 17B]
 gi|187720582|gb|ACD21803.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           B str. Eklund 17B]
          Length = 450

 Score = 36.1 bits (82), Expect = 8.8,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 34/76 (44%), Gaps = 7/76 (9%)

Query: 219 SSTKPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATKR-----IASVQPLG 272
             +    ++ D + G+GT G  VA   +   +GIE+ ++ ++ A +      + + + L 
Sbjct: 303 MGSSENKVVFDLYCGTGTIGQIVAPNAK-KVVGIELIEEAVEAAKENAKLNGLNNCEFLA 361

Query: 273 NIELTVLTGKRTEPRV 288
                ++   + +P +
Sbjct: 362 GDVAEIIKTVKDKPDI 377


>gi|168487479|ref|ZP_02711987.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC1087-00]
 gi|183569696|gb|EDT90224.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC1087-00]
          Length = 543

 Score = 36.1 bits (82), Expect = 8.8,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 1/98 (1%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGD 225
           N +A+           D++     G++            T+  E L    +  +  K  D
Sbjct: 247 NTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDD 306

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +++D + G GT G    K  +   G+E+  + ++ + K
Sbjct: 307 VVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKK 344


>gi|194446493|ref|YP_002042638.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|226710110|sp|B4SUN8|PRMA_SALNS RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|194405156|gb|ACF65378.1| ribosomal protein L11 methyltransferase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 293

 Score = 36.1 bits (82), Expect = 8.8,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 47/144 (32%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   IP  +    + +     G   HPT    +L  + 
Sbjct: 95  WEREWMDNFHPMRFGERLWICPSWRDIPDENAVNVMLDPGLAFGTGTHPTT---SLCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG       K      IGI++    I  +     + +  G  +
Sbjct: 152 LDGLDLNGKTVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRD---NAERNGVSD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L   + +P      +V   ++
Sbjct: 209 RLELYLPKDQPEAMKADVVVANIL 232


>gi|332998379|gb|EGK17978.1| ribosomal protein L11 methyltransferase [Shigella flexneri VA-6]
          Length = 293

 Score = 36.1 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    +L  + 
Sbjct: 95  WEREWMDNFHPMRFGERLWICPSWRDVPDENAVNVMLDPGLAFGTGTHPTT---SLCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG       K      IGI++    I  +     + +  G  +
Sbjct: 152 LDSLDLTGKTVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRD---NAERNGVSD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L   + +P      +V   ++
Sbjct: 209 RLELYLPKDQPEEMKADVVVANIL 232


>gi|328866133|gb|EGG14519.1| hypothetical protein DFA_12295 [Dictyostelium fasciculatum]
          Length = 728

 Score = 36.1 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 210 EALLSRILVSSTKPGDIIL-DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           E L S++L  +    D +L D   G+GT G       R   G+E+  D +  A K
Sbjct: 471 EKLYSKVLEWADCAKDTVLLDVCCGTGTIGQCVSGNVRHIYGLELAPDAVKDAIK 525


>gi|328865866|gb|EGG14252.1| hypothetical protein DFA_12022 [Dictyostelium fasciculatum]
          Length = 223

 Score = 36.1 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIAT 262
           + T  P ++   + +++T+  D++LD   G G      AK      IGI++  D +  A 
Sbjct: 20  YATSSPFSIDRMLQIANTQKDDVLLDIGCGDGRIAIYAAKHYGIRAIGIDINPDLLAKAA 79

Query: 263 K 263
           K
Sbjct: 80  K 80


>gi|189054471|dbj|BAG37244.1| unnamed protein product [Homo sapiens]
          Length = 853

 Score = 36.1 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 209 PEALLSRI--LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PE +   I   VS +   D+++D F G G +           I I++    + IA  R
Sbjct: 674 PEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDP--VKIALAR 729


>gi|30689545|ref|NP_850403.1| thiol methyltransferase, putative [Arabidopsis thaliana]
 gi|75323116|sp|Q6AWU6|HOL3_ARATH RecName: Full=Probable thiol methyltransferase 2; AltName:
           Full=Protein HARMLESS TO OZONE LAYER 3; Short=AtHOL3
 gi|50897218|gb|AAT85748.1| At2g43940 [Arabidopsis thaliana]
 gi|52421315|gb|AAU45227.1| At2g43940 [Arabidopsis thaliana]
 gi|330255256|gb|AEC10350.1| putative thiol methyltransferase 2 [Arabidopsis thaliana]
          Length = 226

 Score = 36.1 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 38/88 (43%)

Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           KP  +++ ++ + + P    L P  G+G          R  +G+++ +  ++ +TK+ ++
Sbjct: 44  KPTPVIAHLVETGSLPNGRALVPGCGTGYDVVAMASPDRHVVGLDISKTAVERSTKKFST 103

Query: 268 VQPLGNIELTVLTGKRTEPRVAFNLLVE 295
           +                EP   F+L+ +
Sbjct: 104 LPNAKYFSFLSEDFFTWEPAEKFDLIFD 131


>gi|15077008|gb|AAK83025.1|AF286340_1 hepatocellular carcinoma-associated antigen 137 [Homo sapiens]
          Length = 853

 Score = 36.1 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 209 PEALLSRI--LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PE +   I   VS +   D+++D F G G +           I I++    + IA  R
Sbjct: 674 PEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDP--VKIALAR 729


>gi|20089604|ref|NP_615679.1| hypothetical protein MA0719 [Methanosarcina acetivorans C2A]
 gi|19914523|gb|AAM04159.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 197

 Score = 36.1 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 8/82 (9%)

Query: 207 QKPEALLSRILVSSTKPGDI---ILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIAT 262
           Q P  L + IL  +   GD+   + D   G+G     AK L  R  +G +     +++A 
Sbjct: 27  QTPSPLAAEILHFAYMQGDLDESVQDLGCGTGILAIGAKLLGARKVVGYDTDPKALEVAR 86

Query: 263 KRIASVQPLG-NIELTVLTGKR 283
           K   + + LG  +E      K+
Sbjct: 87  K---NAERLGVEVEFVCSDIKK 105


>gi|225620601|ref|YP_002721858.1| putative methyltransferase [Brachyspira hyodysenteriae WA1]
 gi|225215420|gb|ACN84154.1| putative methyltransferase [Brachyspira hyodysenteriae WA1]
          Length = 288

 Score = 36.1 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 50/160 (31%), Gaps = 23/160 (14%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICS--------GSERLRNKDGEKLHPT----- 206
             K Y  +Y+       +V  R+    P C+          E L      K +PT     
Sbjct: 1   MYKCYLCDYEGYMKIKSNVNGRNILYCPNCTLEFMSPQTSDEELNKIYSAKNYPTCSFDN 60

Query: 207 ---QKPEALLSRILVSSTKP-------GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
              + P  L+ R   +              +LD    SG     AK       GIE+ + 
Sbjct: 61  GINENPITLMKRKTFNEVLKKILPYCNYGNLLDIGCSSGLLLEEAKSFGFDTYGIEISEY 120

Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
             +IA KRI S +       T    K     +    ++E 
Sbjct: 121 ASNIAKKRIGSNRIHSGTLETSNFNKNFFNVITMIDVIEH 160


>gi|218550543|ref|YP_002384334.1| ribosomal protein L11 methyltransferase [Escherichia fergusonii
           ATCC 35469]
 gi|218702032|ref|YP_002409661.1| ribosomal protein L11 methyltransferase [Escherichia coli IAI39]
 gi|226710077|sp|B7NLI5|PRMA_ECO7I RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|226710084|sp|B7LRN4|PRMA_ESCF3 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|218358084|emb|CAQ90730.1| methylase for 50S ribosomal subunit protein L11 [Escherichia
           fergusonii ATCC 35469]
 gi|218372018|emb|CAR19874.1| methylase for 50S ribosomal subunit protein L11 [Escherichia coli
           IAI39]
 gi|323189129|gb|EFZ74413.1| ribosomal protein L11 methyltransferase [Escherichia coli RN587/1]
 gi|324115137|gb|EGC09101.1| ribosomal protein L11 methyltransferase [Escherichia fergusonii
           B253]
 gi|325498838|gb|EGC96697.1| ribosomal protein L11 methyltransferase [Escherichia fergusonii
           ECD227]
          Length = 293

 Score = 36.1 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    +L  + 
Sbjct: 95  WEREWMDNFHPMRFGERLWICPSWRDVPDENAVNVMLDPGLAFGTGTHPTT---SLCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG       K      IGI++    I  +     + +  G  +
Sbjct: 152 LDSLDLTGKTVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRD---NAERNGVSD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L   + +P      +V   ++
Sbjct: 209 RLELYLPKDQPEEMKADVVVANIL 232


>gi|126737575|ref|ZP_01753305.1| cyclopropane-fatty-acyl-phospholipid synthase [Roseobacter sp.
           SK209-2-6]
 gi|126720968|gb|EBA17672.1| cyclopropane-fatty-acyl-phospholipid synthase [Roseobacter sp.
           SK209-2-6]
          Length = 447

 Score = 36.1 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 52/158 (32%), Gaps = 6/158 (3%)

Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETL-IWASPSPKAKGYTFNYDALKAANEDVQMR 181
              ++ I          F G+    A+E    W   + +++            N+   + 
Sbjct: 131 QCFMDLIHMAAEETYDGFPGQALARAYERFRFWMQRNHRSQAKKNISYHYDLGNDFYALW 190

Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA-V 240
            D  +   S   +   +  E+    +      S +     KPGD +L+   G G      
Sbjct: 191 LDETMTYSSALFKTGQESLERAQQAKY----ASMVDQMGAKPGDHVLEIGCGWGGFAEYA 246

Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278
           AK+      G+ + Q+  D A  RIA       +E  +
Sbjct: 247 AKERGLRVTGLTLSQEQYDYAKARIARAGLSDQVEFRI 284


>gi|329768568|ref|ZP_08260055.1| hypothetical protein HMPREF0428_01752 [Gemella haemolysans M341]
 gi|328836609|gb|EGF86268.1| hypothetical protein HMPREF0428_01752 [Gemella haemolysans M341]
          Length = 151

 Score = 36.1 bits (82), Expect = 9.0,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADP 47
          K K    + +  L+  P  S D+I+ DP
Sbjct: 50 KIKTYNVDCLDYLKNCPDASFDIIYFDP 77


>gi|227523038|ref|ZP_03953087.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           hilgardii ATCC 8290]
 gi|227089856|gb|EEI25168.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           hilgardii ATCC 8290]
          Length = 456

 Score = 36.1 bits (82), Expect = 9.0,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 13/126 (10%)

Query: 210 EALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           E L    +  +     DI++D + G GT      K+ +   G+E+  + I+ A KR A +
Sbjct: 293 EKLYKLAIQKAQLNKDDIVIDAYCGIGTISLSLAKVVKKVYGVEIVPEAIEDA-KRNAHI 351

Query: 269 QPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTEL 328
             + N +  V   +    +       ++  ++P  I+ +           D +LI     
Sbjct: 352 NKISNCKFVVAKAEEQLGK------WQKAGLKPDVIVVDPPRKGL-----DESLIESVAE 400

Query: 329 GSIHRV 334
            S+ R+
Sbjct: 401 MSLQRL 406


>gi|220915009|ref|YP_002490317.1| Methyltransferase type 11 [Methylobacterium nodulans ORS 2060]
 gi|219952760|gb|ACL63150.1| Methyltransferase type 11 [Methylobacterium nodulans ORS 2060]
          Length = 254

 Score = 36.1 bits (82), Expect = 9.0,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 5/80 (6%)

Query: 209 PEALLSRIL-----VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           P+ LL   L     ++  +P D++LD   G+G             IGI++    I++A  
Sbjct: 34  PQRLLEYRLALVRSLARPRPSDVVLDLGCGNGHHLLALVPEVARGIGIDVSPGMIELAHA 93

Query: 264 RIASVQPLGNIELTVLTGKR 283
           R+ S   + N+   V   + 
Sbjct: 94  RVRSSPWIDNLTFEVDDAEE 113


>gi|212636800|ref|YP_002313325.1| peptidase S10, serine carboxypeptidase [Shewanella piezotolerans
           WP3]
 gi|212558284|gb|ACJ30738.1| Peptidase S10, serine carboxypeptidase [Shewanella piezotolerans
           WP3]
          Length = 511

 Score = 36.1 bits (82), Expect = 9.0,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 41/134 (30%), Gaps = 8/134 (5%)

Query: 34  KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
            +  +S DL+F DP   +         ++       D W      ++   F R WL+   
Sbjct: 147 SILDES-DLVFIDP---VGTGFSRALGENKGA----DFWGVSEDAKSIAEFMRRWLIEHG 198

Query: 94  RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
           R   P               +   LQ     I  + V   S+ +     R     ++  I
Sbjct: 199 RWNSPKYLAGESYGTTRAAALVDELQGGWTDISINGVMLISSILDFSHARYQPGNNQPYI 258

Query: 154 WASPSPKAKGYTFN 167
              P+  A  +  +
Sbjct: 259 GFLPTMAATAFYHD 272


>gi|19851925|gb|AAL99922.1|AF432215_1 CLL-associated antigen KW-2 [Homo sapiens]
          Length = 853

 Score = 36.1 bits (82), Expect = 9.0,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 209 PEALLSRI--LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PE +   I   VS +   D+++D F G G +           I I++    + IA  R
Sbjct: 674 PEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDP--VKIALAR 729


>gi|119607168|gb|EAW86762.1| nuclear receptor coactivator 6 interacting protein, isoform CRA_b
           [Homo sapiens]
          Length = 853

 Score = 36.1 bits (82), Expect = 9.0,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 209 PEALLSRI--LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PE +   I   VS +   D+++D F G G +           I I++    + IA  R
Sbjct: 674 PEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDP--VKIALAR 729


>gi|307329339|ref|ZP_07608502.1| Cyclopropane-fatty-acyl-phospholipid synthase [Streptomyces
           violaceusniger Tu 4113]
 gi|306885007|gb|EFN16030.1| Cyclopropane-fatty-acyl-phospholipid synthase [Streptomyces
           violaceusniger Tu 4113]
          Length = 437

 Score = 36.1 bits (82), Expect = 9.1,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 55/149 (36%), Gaps = 20/149 (13%)

Query: 222 KPGDIILDPFFGSGT-SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
           +PG  +LD   G G+     A++     +G+ + ++    A KRIA       +E+ V  
Sbjct: 203 RPGQRLLDVGCGWGSMVLHAAREYGVRAVGVTLSEEQAAYARKRIADAGLTDQVEIRV-Q 261

Query: 281 GKRTEPRVAFNLLVERGL-IQPGQILTNAQGNISAT----VCADGTLISGTELGSIHRVG 335
             R  P   ++ +   G+    G +        +A     +   G L++       H++ 
Sbjct: 262 DYREVPDGPYDAISSIGMAEHVGSV---RYAEYTAILHRLLRPGGRLLN-------HQIA 311

Query: 336 AKVSGSE---TCNGWNFWYFEKLGELHSI 361
            +    E     + +   Y    GEL  +
Sbjct: 312 RRPQPDEEAYHVDEFIDRYVFPDGELAPV 340


>gi|169334084|ref|ZP_02861277.1| hypothetical protein ANASTE_00477 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258801|gb|EDS72767.1| hypothetical protein ANASTE_00477 [Anaerofustis stercorihominis DSM
           17244]
          Length = 450

 Score = 36.1 bits (82), Expect = 9.1,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 219 SSTKPGDIILDPFFGSGT-SGAVAKKLRRSFIGIEMKQDYIDIAT 262
              +  D+ILD + G+GT +  ++ K      GIE+ ++ I+ A 
Sbjct: 303 IGEEKSDVILDLYCGTGTITQILSDKAN-EVYGIEIVEEAIEAAK 346


>gi|168494457|ref|ZP_02718600.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC3059-06]
 gi|183575617|gb|EDT96145.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC3059-06]
 gi|332075376|gb|EGI85845.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae GA41301]
          Length = 543

 Score = 36.1 bits (82), Expect = 9.1,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 1/98 (1%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGD 225
           N +A+           D++     G++            T+  E L    +  +  K  D
Sbjct: 247 NTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDD 306

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           +++D + G GT G    K  +   G+E+  + ++ + K
Sbjct: 307 VVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKK 344


>gi|114620166|ref|XP_001153796.1| PREDICTED: trimethylguanosine synthase isoform 1 [Pan troglodytes]
          Length = 855

 Score = 36.1 bits (82), Expect = 9.1,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 209 PEALLSRI--LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PE +   I   VS +   D+++D F G G +           I I++    + IA  R
Sbjct: 676 PEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDP--VKIALAR 731


>gi|332213222|ref|XP_003255719.1| PREDICTED: tRNA guanosine-2'-O-methyltransferase TRM11 homolog
           [Nomascus leucogenys]
          Length = 463

 Score = 36.1 bits (82), Expect = 9.2,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 13/34 (38%)

Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            K  DI+ DPF G+G              G ++ 
Sbjct: 213 VKENDIVFDPFVGTGGLLIACAHFGAYVYGTDID 246


>gi|328542137|ref|YP_004302246.1| hypothetical protein SL003B_0517 [polymorphum gilvum SL003B-26A1]
 gi|326411887|gb|ADZ68950.1| Conserved domain protein [Polymorphum gilvum SL003B-26A1]
          Length = 1065

 Score = 36.1 bits (82), Expect = 9.2,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 40/144 (27%), Gaps = 26/144 (18%)

Query: 40  VDLIFADPPYNLQLNGQLYRP----------DHSLVDAVTDSW---------DKFSSFEA 80
            DL+  DPP+   +                      D  +  +         +++   E 
Sbjct: 673 FDLVITDPPFGDLVQYSELSDFFYVWLRIVMRERYPDVFSAEYTPKTLEAVANRYREPED 732

Query: 81  ----YDAFTRAWLLACRRVLKPNGTL-WVIGSYHNIFRIGTM--LQNLNFWILNDIVWRK 133
               Y     A      RVLKP G L +      +   +  +  L +  F++      R 
Sbjct: 733 PNGFYQRLLTACWKEAHRVLKPGGMLAFTFHHSEDAPWVSVLESLFDAGFYLEATYPIRS 792

Query: 134 SNPMPNFRGRRFQNAHETLIWASP 157
                + +    +  ++ +     
Sbjct: 793 DETKGDGQFGSQKVEYDIIHVCRK 816


>gi|331684899|ref|ZP_08385491.1| ribosomal protein L11 methyltransferase [Escherichia coli H299]
 gi|331078514|gb|EGI49720.1| ribosomal protein L11 methyltransferase [Escherichia coli H299]
          Length = 293

 Score = 36.1 bits (82), Expect = 9.2,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    +L  + 
Sbjct: 95  WEREWMDNFHPMRFGERLWICPSWRDVPDENAVNVMLDPGLAFGTGTHPTT---SLCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG       K      IGI++    I  +     + +  G  +
Sbjct: 152 LDSLDLTGKTVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRD---NAERNGVSD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L   + +P      +V   ++
Sbjct: 209 RLELYLPKDQPEEMKADVVVANIL 232


>gi|218555823|ref|YP_002388736.1| ribosomal protein L11 methyltransferase [Escherichia coli IAI1]
 gi|226710078|sp|B7M0X1|PRMA_ECO8A RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|218362591|emb|CAR00216.1| methylase for 50S ribosomal subunit protein L11 [Escherichia coli
           IAI1]
          Length = 293

 Score = 36.1 bits (82), Expect = 9.2,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 47/144 (32%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    +L  + 
Sbjct: 95  WEREWMDNFHPMRFGERLWICPSWRDVPDENAVNVMLDPGLAFGTGTHPTT---SLCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S       ++D   GSG       K      IGI++    I  +     + +  G  +
Sbjct: 152 LDSLDLTDKTVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRD---NAERNGVSD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L   + +P      +V   ++
Sbjct: 209 RLELYLPKDQPEEMKADVVVANIL 232


>gi|325269116|ref|ZP_08135736.1| TrmA family RNA methyltransferase [Prevotella multiformis DSM
           16608]
 gi|324988503|gb|EGC20466.1| TrmA family RNA methyltransferase [Prevotella multiformis DSM
           16608]
          Length = 474

 Score = 36.1 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 67/212 (31%), Gaps = 13/212 (6%)

Query: 60  PDHSLVDAVTDSWDKFSSFE---AYDAFTRAWLLACRRVLKPNG-TLWVIGSYHNIFR-I 114
            + ++   +T ++DK    E     D          R      G T + I   H + R I
Sbjct: 159 SEGAIGFHITGAFDKVYPIEKCWLMDDLCNQIRNDIRDYALGTGMTFYDIRGQHGLLRDI 218

Query: 115 GTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
                N   W++                   Q+  +      P   +  Y  N       
Sbjct: 219 MVRNSNTGEWMVLIQFHYDEEGDEERAKALMQHVAD----RFPQITSLSYVDNQKGNDTF 274

Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLH---PTQKPEALLSRILVSSTKPGD-IILDP 230
           N+   +       I    E L+ K G K      T++   L S     ++  GD ++ D 
Sbjct: 275 NDLDLITFKGNDYIFETMEDLKFKVGPKSFYQTNTEQAYHLYSVAREFASLTGDELVYDL 334

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           + G+GT         R  IGIE   + I+ A 
Sbjct: 335 YTGTGTIANFVAGKARKVIGIEYVPEAIEDAK 366


>gi|323966437|gb|EGB61871.1| ribosomal protein L11 methyltransferase [Escherichia coli M863]
 gi|323979022|gb|EGB74100.1| ribosomal protein L11 methyltransferase [Escherichia coli TW10509]
 gi|327251352|gb|EGE63041.1| ribosomal protein L11 methyltransferase [Escherichia coli STEC_7v]
          Length = 293

 Score = 36.1 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    +L  + 
Sbjct: 95  WEREWMDNFHPMRFGERLWICPSWRDVPDENAVNVMLDPGLAFGTGTHPTT---SLCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG       K      IGI++    I  +     + +  G  +
Sbjct: 152 LDSLDLTGKTVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRD---NAERNGVSD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L   + +P      +V   ++
Sbjct: 209 RLELYLPKDQPEEMKADVVVANIL 232


>gi|195081752|ref|XP_001997355.1| GH11743 [Drosophila grimshawi]
 gi|193905442|gb|EDW04309.1| GH11743 [Drosophila grimshawi]
          Length = 486

 Score = 36.1 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 19/37 (51%)

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
            +  + GD++ DPF G+G+    A K     +G ++ 
Sbjct: 209 QAMVRDGDLVFDPFVGTGSLLVSAAKFGGYVLGADID 245


>gi|254827059|ref|ZP_05231746.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|254831706|ref|ZP_05236361.1| hypothetical protein Lmon1_10143 [Listeria monocytogenes 10403S]
 gi|255026465|ref|ZP_05298451.1| hypothetical protein LmonocytFSL_09235 [Listeria monocytogenes FSL
           J2-003]
 gi|284802498|ref|YP_003414363.1| hypothetical protein LM5578_2254 [Listeria monocytogenes 08-5578]
 gi|284995640|ref|YP_003417408.1| hypothetical protein LM5923_2205 [Listeria monocytogenes 08-5923]
 gi|258599441|gb|EEW12766.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|284058060|gb|ADB69001.1| hypothetical protein LM5578_2254 [Listeria monocytogenes 08-5578]
 gi|284061107|gb|ADB72046.1| hypothetical protein LM5923_2205 [Listeria monocytogenes 08-5923]
          Length = 185

 Score = 36.1 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 42/140 (30%), Gaps = 7/140 (5%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDY 257
            G    PT          ++     GD++LD F GSG  G  A        + I+     
Sbjct: 17  PGNNTRPTTDKVKESLFSIIGPFFDGDMVLDLFAGSGGLGIEALSRGAERAVFIDQAALA 76

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL----LVERGLIQPGQILTNAQG--N 311
           I    + +         E+     +R    +  N     L+        Q L    G   
Sbjct: 77  IKTIRQNLEGCHFTERAEVYRNDAERALKLLHKNEWKFDLIFLDPPYKKQQLEKLLGTLE 136

Query: 312 ISATVCADGTLISGTELGSI 331
               V  +G +I   +  +I
Sbjct: 137 KLELVNENGRIICEHDKEAI 156


>gi|119607169|gb|EAW86763.1| nuclear receptor coactivator 6 interacting protein, isoform CRA_c
           [Homo sapiens]
          Length = 793

 Score = 36.1 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 209 PEALLSRI--LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PE +   I   VS +   D+++D F G G +           I I++    + IA  R
Sbjct: 674 PEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDP--VKIALAR 729


>gi|19704242|ref|NP_603804.1| ribosomal RNA small subunit methyltransferase C [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|19714472|gb|AAL95103.1| Ribosomal RNA small subunit methyltransferase C [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
          Length = 223

 Score = 36.1 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 14/115 (12%)

Query: 21  DKI---IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           ++I   I+   + V E   +   D+I ++PPY      ++   +H  +           S
Sbjct: 91  NRIEKNIQFECMDVKEYKKSNYFDVIISNPPYMDDNGKKINENEHKAI-----------S 139

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
                      +   +R+LKP G L+ I   H +  I   L   NF +   I   
Sbjct: 140 RHEIKLSLSELISNAKRLLKPIGLLYFIHRTHRLVEIIKTLDKNNFSVKKIIFIY 194


>gi|73662488|ref|YP_301269.1| ribosomal protein L11 methyltransferase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|82581520|sp|Q49Y20|PRMA_STAS1 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|72495003|dbj|BAE18324.1| putative ribosomal protein L11 methylase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 312

 Score = 36.1 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 60/179 (33%), Gaps = 22/179 (12%)

Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL--------------HPTQKPEALLS 214
              +  +     R+     I    E  + +D  +L              HPT    ++  
Sbjct: 108 WENEWKHYFHPFRASEKFTIVPSWETYQQEDDSELCIELDPGMAFGTGDHPTT---SMCL 164

Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYIDIATKRIASVQPLGN 273
           + + +  K  D ++D   GSG     A  L    I  +++ +  + +A +          
Sbjct: 165 KAIEAYVKSSDSVIDVGTGSGILSIAAHLLGVKRIKALDVDEMAVRVAKENFQKNNCEYA 224

Query: 274 IELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIH 332
           IE       + E    F++++   L    + + +   N   T+  DG  I+   +   H
Sbjct: 225 IEAVPGNLLKEETE-KFDVVIANILAHIIEEMIDDAYN---TLNKDGYFITSGIIEEKH 279


>gi|289449831|ref|YP_003475628.1| type I restriction-modification system subunit M [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289184378|gb|ADC90803.1| type I restriction-modification system, M subunit [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 522

 Score = 36.1 bits (82), Expect = 9.4,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 6/102 (5%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
           + +     N D+    D    + +       K G +         LL+RI        + 
Sbjct: 169 DMNIGDVKNHDIDAFGDAYEYLMTMYASNAGKSGGEFFTPADVSELLTRIGTVGKTEINK 228

Query: 227 ILDPFFGSGTSGAVAKK-LRRS-----FIGIEMKQDYIDIAT 262
           + DP  GSG+    A+K L R      F G E+     ++  
Sbjct: 229 VYDPACGSGSLLLKAEKVLGRDKIRNGFYGQEINITTYNLCR 270


>gi|255726602|ref|XP_002548227.1| hypothetical protein CTRG_02524 [Candida tropicalis MYA-3404]
 gi|240134151|gb|EER33706.1| hypothetical protein CTRG_02524 [Candida tropicalis MYA-3404]
          Length = 434

 Score = 36.1 bits (82), Expect = 9.4,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           ++   PG I+ DPF G+G+    A       IG ++ 
Sbjct: 200 LAQVAPGKIVYDPFTGTGSFLVAAANFGGLTIGSDID 236


>gi|151301096|ref|NP_079107.6| trimethylguanosine synthase [Homo sapiens]
 gi|317373500|sp|Q96RS0|TGS1_HUMAN RecName: Full=Trimethylguanosine synthase; AltName:
           Full=CLL-associated antigen KW-2; AltName:
           Full=Cap-specific guanine-N2 methyltransferase; AltName:
           Full=Hepatocellular carcinoma-associated antigen 137;
           AltName: Full=Nuclear receptor coactivator 6-interacting
           protein; AltName: Full=PRIP-interacting protein with
           methyltransferase motif; Short=PIMT; Short=PIPMT
 gi|182887849|gb|AAI60105.1| Trimethylguanosine synthase homolog (S. cerevisiae) [synthetic
           construct]
          Length = 853

 Score = 36.1 bits (82), Expect = 9.4,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 209 PEALLSRI--LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           PE +   I   VS +   D+++D F G G +           I I++    + IA  R
Sbjct: 674 PEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDP--VKIALAR 729


>gi|73999114|ref|XP_535077.2| PREDICTED: similar to PRIP-interacting protein PIPMT isoform 1
           [Canis familiaris]
          Length = 852

 Score = 36.1 bits (82), Expect = 9.4,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 209 PEALLSRI--LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           PE +   I   VS +   DI++D F G G +        +  I I++    ID+A  
Sbjct: 673 PEKIAEHIAGRVSQSFKCDIVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARN 729


>gi|320040035|gb|EFW21969.1| RNA methylase [Coccidioides posadasii str. Silveira]
          Length = 240

 Score = 36.1 bits (82), Expect = 9.5,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 3/108 (2%)

Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
           P P+ K Y    +           R +       G   L +     + P      + + +
Sbjct: 8   PPPEVKHYNKYGEVPWDIQNYWAQRYNIFSRYDDGVW-LTDDAWFGVTPEPIANKIAAHM 66

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR--RSFIGIEMKQDYIDIAT 262
             ++ +   I++D F G G +     +    R    IE     +  A 
Sbjct: 67  TAAAPQKKSIVIDTFAGVGGNAIAFARSNKWRRVYAIEKDPASLQCAK 114


>gi|310658947|ref|YP_003936668.1| RNA methyltransferase [Clostridium sticklandii DSM 519]
 gi|308825725|emb|CBH21763.1| Uncharacterized RNA methyltransferase BCE_0363 [Clostridium
           sticklandii]
          Length = 475

 Score = 36.1 bits (82), Expect = 9.5,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 6/67 (8%)

Query: 224 GDIILDPFFGSGT-SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
            D++ D + G GT S  +AKK +    GIE+ ++ I+ A K         NIE       
Sbjct: 323 EDVVYDIYCGIGTISLFLAKKAK-HVYGIEIVKEAIENAKK----NAKRNNIENASFYAG 377

Query: 283 RTEPRVA 289
           + E  V 
Sbjct: 378 KAEEVVP 384


>gi|255972081|ref|ZP_05422667.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|255963099|gb|EET95575.1| conserved hypothetical protein [Enterococcus faecalis T1]
          Length = 184

 Score = 36.1 bits (82), Expect = 9.5,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 6/116 (5%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           +I    G  RL+  DG+   PT          ++     G + LD + GSG     A   
Sbjct: 3   VISGEYGGRRLKALDGDNTRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAASR 62

Query: 245 RR-SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT-----EPRVAFNLLV 294
                I IE     + +  + IA  +     E+  +   R      E ++ F+L++
Sbjct: 63  GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 118


>gi|303312089|ref|XP_003066056.1| trimethylguanosine synthase, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240105718|gb|EER23911.1| trimethylguanosine synthase, putative [Coccidioides posadasii C735
           delta SOWgp]
          Length = 240

 Score = 36.1 bits (82), Expect = 9.5,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 3/108 (2%)

Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
           P P+ K Y    +           R +       G   L +     + P      + + +
Sbjct: 8   PPPEVKHYNKYGEVPWDIQNYWAQRYNIFSRYDDGVW-LTDDAWFGVTPEPIANKIAAYM 66

Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR--RSFIGIEMKQDYIDIAT 262
             ++ +   I++D F G G +     +    R    IE     +  A 
Sbjct: 67  TAAAPQKKSIVIDTFAGVGGNAIAFARSNKWRRVYAIEKDPASLQCAK 114


>gi|168777672|ref|ZP_02802679.1| ribosomal protein L11 methyltransferase [Escherichia coli O157:H7
           str. EC4196]
 gi|187767131|gb|EDU30975.1| ribosomal protein L11 methyltransferase [Escherichia coli O157:H7
           str. EC4196]
          Length = 293

 Score = 36.1 bits (82), Expect = 9.5,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    +L  + 
Sbjct: 95  WEREWMDNFHPMRFGERLWICPSWRDVPDENAVNVMLDPGLAFGTGTHPTT---SLCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG       K      IGI++    I  +     + +  G  +
Sbjct: 152 LDSLDLTGKTVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRD---NAERNGVSD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L   + +P      +V   ++
Sbjct: 209 RLELYLPKDQPEEMKADVVVANIL 232


>gi|255994151|ref|ZP_05427286.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium saphenum
           ATCC 49989]
 gi|255993819|gb|EEU03908.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium saphenum
           ATCC 49989]
          Length = 399

 Score = 36.1 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 207 QKPEALLSRILVSSTKPGD-IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           Q  E L    + S     D +I D F G+GT         +  IG+++  D I  A +
Sbjct: 229 QAAENLYRYAINSIDNVQDKVIFDLFCGTGTITQSLAGAAKKVIGVDISDDAIKSAIE 286


>gi|168491923|ref|ZP_02716066.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC0288-04]
 gi|221231781|ref|YP_002510933.1| RNA methyltransferase [Streptococcus pneumoniae ATCC 700669]
 gi|183573799|gb|EDT94327.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC0288-04]
 gi|220674241|emb|CAR68776.1| putative RNA methyltransferase [Streptococcus pneumoniae ATCC
           700669]
          Length = 543

 Score = 36.1 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 54/146 (36%), Gaps = 8/146 (5%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGD 225
           N +A+           D++     G++            T+  E L    +  +  K  D
Sbjct: 247 NTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDD 306

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           +I+D + G GT G    K  +   G+E+  + ++ + K  AS+  + N      T +   
Sbjct: 307 VIIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSQKN-ASLNKITNAHYVCDTAENAM 365

Query: 286 PRVAFNLLVERGLIQPGQILTNAQGN 311
            +     L E   IQP  IL +    
Sbjct: 366 KK----WLKEG--IQPTVILVDPPRK 385


>gi|149191501|ref|ZP_01869750.1| N6-adenine-specific methylase [Vibrio shilonii AK1]
 gi|148834689|gb|EDL51677.1| N6-adenine-specific methylase [Vibrio shilonii AK1]
          Length = 214

 Score = 36.1 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 1/77 (1%)

Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG-AVAKKLRRSFIGIE 252
           +L   D E L PT           ++   P   +LD F GSG+ G   A +       IE
Sbjct: 45  KLPVHDAEGLRPTTDRVKETVFNWLAQDIPHAKVLDLFAGSGSLGFEAASRQAAQVTMIE 104

Query: 253 MKQDYIDIATKRIASVQ 269
           +           +A V+
Sbjct: 105 LNDKAYQQIISNVALVK 121


>gi|66043617|ref|YP_233458.1| hypothetical protein Psyr_0348 [Pseudomonas syringae pv. syringae
           B728a]
 gi|63254324|gb|AAY35420.1| conserved hypothetical protein [Pseudomonas syringae pv. syringae
           B728a]
          Length = 208

 Score = 36.1 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 45/135 (33%), Gaps = 10/135 (7%)

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           + G + H   +    L R +   T     ILD   G G        +    +G++  + +
Sbjct: 27  RAGTRDHDVSQNIDALLRHIEGPTPWQ--ILDFGCGPGRDLKAFTAMGHVAVGLDGSERF 84

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLI--QPGQILTNAQGNISAT 315
            ++A          G   +     +   P+  F+ L    ++   P Q L      + AT
Sbjct: 85  AEMARA------ETGCEVVQQNFLELDLPQGRFDGLFANAVLFHIPKQELPRVLRQLHAT 138

Query: 316 VCADGTLISGTELGS 330
           +   G L S    G 
Sbjct: 139 LKPGGVLFSSNPRGE 153


>gi|15902976|ref|NP_358526.1| hypothetical protein spr0932 [Streptococcus pneumoniae R6]
 gi|116515807|ref|YP_816392.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae D39]
 gi|149019625|ref|ZP_01834944.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP23-BS72]
 gi|168483100|ref|ZP_02708052.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC1873-00]
 gi|50401573|sp|Q8DPY7|Y932_STRR6 RecName: Full=Uncharacterized RNA methyltransferase spr0932
 gi|15458541|gb|AAK99736.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|116076383|gb|ABJ54103.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae D39]
 gi|147931000|gb|EDK81980.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP23-BS72]
 gi|172043444|gb|EDT51490.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC1873-00]
          Length = 543

 Score = 36.1 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 206 TQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           T+  E L    +  +  K  D+++D + G GT G    K  +   G+E+  + ++ + K
Sbjct: 286 TEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKK 344


>gi|88858437|ref|ZP_01133079.1| putative enzyme with N-6 Adenine-specific DNA methylase domain
           [Pseudoalteromonas tunicata D2]
 gi|88820054|gb|EAR29867.1| putative enzyme with N-6 Adenine-specific DNA methylase domain
           [Pseudoalteromonas tunicata D2]
          Length = 198

 Score = 36.1 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 3   QKNSLAINENQNSIFEWKD---KIIKGNSISVLEKLPAKSVDLIFADPPY 49
           +K+ +A  + Q++I   K+    ++ G+++  +     +  +L+F DPP+
Sbjct: 86  EKDKIAAQQIQSNILTLKNPNANLVHGDALQFIAT-NNRLFNLVFIDPPF 134


>gi|15900900|ref|NP_345504.1| RNA methyltransferase [Streptococcus pneumoniae TIGR4]
 gi|111658257|ref|ZP_01408949.1| hypothetical protein SpneT_02000571 [Streptococcus pneumoniae
           TIGR4]
 gi|50401653|sp|Q97R12|Y1029_STRPN RecName: Full=Uncharacterized RNA methyltransferase SP_1029
 gi|14972502|gb|AAK75144.1| RNA methyltransferase, TrmA family [Streptococcus pneumoniae TIGR4]
          Length = 543

 Score = 36.1 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 54/146 (36%), Gaps = 8/146 (5%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGD 225
           N +A+           D++     G++            T+  E L    +  +  K  D
Sbjct: 247 NTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDD 306

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           +I+D + G GT G    K  +   G+E+  + ++ + K  AS+  + N      T +   
Sbjct: 307 VIIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSQKN-ASLNKITNAHYVCDTAENAM 365

Query: 286 PRVAFNLLVERGLIQPGQILTNAQGN 311
            +     L E   IQP  IL +    
Sbjct: 366 KK----WLKEG--IQPTVILVDPPRK 385


>gi|329572369|gb|EGG54023.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TX1467]
          Length = 217

 Score = 36.1 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 6/116 (5%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           +I    G  RL+  DG+   PT          ++     G + LD + GSG     A   
Sbjct: 36  VISGEYGGRRLKALDGDNTRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSR 95

Query: 245 RR-SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT-----EPRVAFNLLV 294
                I IE     + +  + IA  +     E+  +   R      E ++ F+L++
Sbjct: 96  GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 151


>gi|322387793|ref|ZP_08061401.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus infantis ATCC
           700779]
 gi|321141295|gb|EFX36792.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus infantis ATCC
           700779]
          Length = 452

 Score = 36.1 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 54/146 (36%), Gaps = 8/146 (5%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGD 225
           N +A+      V    D++     G++   +        T+  E L    +  +     D
Sbjct: 247 NTNAIFGKEWRVLYGQDYITDQMLGNDFQISGPAFYQVNTEMAEKLYQTAIDFAELSEDD 306

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           +++D + G GT G    K  +   G+E+  + ++ + K  A +  + N      T +   
Sbjct: 307 VVIDAYSGIGTIGLSVAKHVKEVYGVEVTPEAVENSQKN-AELNGITNAHYVCDTAENAM 365

Query: 286 PRVAFNLLVERGLIQPGQILTNAQGN 311
                N L E   IQP  IL +    
Sbjct: 366 ----KNWLKEG--IQPTAILVDPPRK 385


>gi|307277114|ref|ZP_07558218.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TX2134]
 gi|306506044|gb|EFM75210.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TX2134]
          Length = 217

 Score = 36.1 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 6/116 (5%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           +I    G  RL+  DG+   PT          ++     G + LD + GSG     A   
Sbjct: 36  VISGEYGGRRLKALDGDNTRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSR 95

Query: 245 RR-SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT-----EPRVAFNLLV 294
                I IE     + +  + IA  +     E+  +   R      E ++ F+L++
Sbjct: 96  GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 151


>gi|301022202|ref|ZP_07186117.1| ribosomal protein L11 methyltransferase [Escherichia coli MS 69-1]
 gi|300397615|gb|EFJ81153.1| ribosomal protein L11 methyltransferase [Escherichia coli MS 69-1]
          Length = 293

 Score = 36.1 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    +L  + 
Sbjct: 95  WEREWMDNFHPMRFGERLWICPSWRDVPDENAVNVMLDPGLAFGTGTHPTT---SLCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L S    G  ++D   GSG       K      IGI++    I  +     + +  G  +
Sbjct: 152 LDSLDLTGKTVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRD---NAERNGVSD 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L   + +P      +V   ++
Sbjct: 209 RLELYLPKDQPEEMKADVVVANIL 232


>gi|293383538|ref|ZP_06629448.1| RNA methyltransferase, RsmD family [Enterococcus faecalis R712]
 gi|293387349|ref|ZP_06631905.1| RNA methyltransferase, RsmD family [Enterococcus faecalis S613]
 gi|312906088|ref|ZP_07765100.1| RNA methyltransferase, RsmD family [Enterococcus faecalis DAPTO
           512]
 gi|312909434|ref|ZP_07768289.1| RNA methyltransferase, RsmD family [Enterococcus faecalis DAPTO
           516]
 gi|291079050|gb|EFE16414.1| RNA methyltransferase, RsmD family [Enterococcus faecalis R712]
 gi|291083247|gb|EFE20210.1| RNA methyltransferase, RsmD family [Enterococcus faecalis S613]
 gi|310627734|gb|EFQ11017.1| RNA methyltransferase, RsmD family [Enterococcus faecalis DAPTO
           512]
 gi|311290107|gb|EFQ68663.1| RNA methyltransferase, RsmD family [Enterococcus faecalis DAPTO
           516]
          Length = 217

 Score = 36.1 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 6/116 (5%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           +I    G  RL+  DG+   PT          ++     G + LD + GSG     A   
Sbjct: 36  VISGEYGGRRLKALDGDNTRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSR 95

Query: 245 RR-SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT-----EPRVAFNLLV 294
                I IE     + +  + IA  +     E+  +   R      E ++ F+L++
Sbjct: 96  GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 151


>gi|257467077|ref|ZP_05631388.1| hypothetical protein FgonA2_06519 [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 54

 Score = 36.1 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
               ++L R    +E    Y D+  KR AS+
Sbjct: 1   MIACEQLNRQAFLMEYDPVYADVIVKRYASM 31


>gi|256961254|ref|ZP_05565425.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256951750|gb|EEU68382.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
          Length = 184

 Score = 36.1 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 6/116 (5%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           +I    G  RL+  DG+   PT          ++     G + LD + GSG     A   
Sbjct: 3   VISGEYGGRRLKALDGDNTRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSR 62

Query: 245 RR-SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT-----EPRVAFNLLV 294
                I IE     + +  + IA  +     E+  +   R      E ++ F+L++
Sbjct: 63  GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 118


>gi|256616991|ref|ZP_05473837.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256596518|gb|EEU15694.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
          Length = 184

 Score = 36.1 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 6/116 (5%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           +I    G  RL+  DG+   PT          ++     G + LD + GSG     A   
Sbjct: 3   VISGEYGGRRLKALDGDNTRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSR 62

Query: 245 RR-SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT-----EPRVAFNLLV 294
                I IE     + +  + IA  +     E+  +   R      E ++ F+L++
Sbjct: 63  GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 118


>gi|255975148|ref|ZP_05425734.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256853812|ref|ZP_05559177.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256956729|ref|ZP_05560900.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256963619|ref|ZP_05567790.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|257079683|ref|ZP_05574044.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|257081970|ref|ZP_05576331.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|257084522|ref|ZP_05578883.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|257087482|ref|ZP_05581843.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|257090641|ref|ZP_05585002.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257416689|ref|ZP_05593683.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
 gi|257419905|ref|ZP_05596899.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257421907|ref|ZP_05598897.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|294780841|ref|ZP_06746196.1| RNA methyltransferase, RsmD family [Enterococcus faecalis PC1.1]
 gi|300861060|ref|ZP_07107147.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TUSoD
           Ef11]
 gi|255968020|gb|EET98642.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256710755|gb|EEU25798.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256947225|gb|EEU63857.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256954115|gb|EEU70747.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|256987713|gb|EEU75015.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|256990000|gb|EEU77302.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|256992552|gb|EEU79854.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|256995512|gb|EEU82814.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|256999453|gb|EEU85973.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257158517|gb|EEU88477.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
 gi|257161733|gb|EEU91693.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257163731|gb|EEU93691.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|294452086|gb|EFG20533.1| RNA methyltransferase, RsmD family [Enterococcus faecalis PC1.1]
 gi|300850099|gb|EFK77849.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TUSoD
           Ef11]
 gi|323481441|gb|ADX80880.1| S-adenosylmethionine-dependent methyltransferase [Enterococcus
           faecalis 62]
          Length = 184

 Score = 36.1 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 6/116 (5%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           +I    G  RL+  DG+   PT          ++     G + LD + GSG     A   
Sbjct: 3   VISGEYGGRRLKALDGDNTRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSR 62

Query: 245 RR-SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT-----EPRVAFNLLV 294
                I IE     + +  + IA  +     E+  +   R      E ++ F+L++
Sbjct: 63  GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 118


>gi|227553985|ref|ZP_03984032.1| methyltransferase [Enterococcus faecalis HH22]
 gi|227176888|gb|EEI57860.1| methyltransferase [Enterococcus faecalis HH22]
 gi|315146729|gb|EFT90745.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TX4244]
 gi|315574315|gb|EFU86506.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TX0309B]
 gi|315580210|gb|EFU92401.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TX0309A]
          Length = 217

 Score = 36.1 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 6/116 (5%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           +I    G  RL+  DG+   PT          ++     G + LD + GSG     A   
Sbjct: 36  VISGEYGGRRLKALDGDNTRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSR 95

Query: 245 RR-SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT-----EPRVAFNLLV 294
                I IE     + +  + IA  +     E+  +   R      E ++ F+L++
Sbjct: 96  GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 151


>gi|227519830|ref|ZP_03949879.1| methyltransferase [Enterococcus faecalis TX0104]
 gi|229545127|ref|ZP_04433852.1| methyltransferase [Enterococcus faecalis TX1322]
 gi|229549375|ref|ZP_04438100.1| methyltransferase [Enterococcus faecalis ATCC 29200]
 gi|307270788|ref|ZP_07552078.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TX4248]
 gi|307271560|ref|ZP_07552832.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TX0855]
 gi|307285765|ref|ZP_07565899.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TX0860]
 gi|307287668|ref|ZP_07567711.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TX0109]
 gi|307290494|ref|ZP_07570407.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TX0411]
 gi|312899882|ref|ZP_07759200.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TX0470]
 gi|312905176|ref|ZP_07764297.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TX0635]
 gi|312953533|ref|ZP_07772371.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TX0102]
 gi|227072720|gb|EEI10683.1| methyltransferase [Enterococcus faecalis TX0104]
 gi|229305612|gb|EEN71608.1| methyltransferase [Enterococcus faecalis ATCC 29200]
 gi|229309672|gb|EEN75659.1| methyltransferase [Enterococcus faecalis TX1322]
 gi|306498441|gb|EFM67945.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TX0411]
 gi|306501406|gb|EFM70709.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TX0109]
 gi|306502526|gb|EFM71793.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TX0860]
 gi|306511832|gb|EFM80830.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TX0855]
 gi|306512902|gb|EFM81544.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TX4248]
 gi|310628545|gb|EFQ11828.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TX0102]
 gi|310631566|gb|EFQ14849.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TX0635]
 gi|311292878|gb|EFQ71434.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TX0470]
 gi|315025361|gb|EFT37293.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TX2137]
 gi|315030169|gb|EFT42101.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TX4000]
 gi|315032946|gb|EFT44878.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TX0017]
 gi|315035750|gb|EFT47682.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TX0027]
 gi|315144854|gb|EFT88870.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TX2141]
 gi|315152023|gb|EFT96039.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TX0031]
 gi|315155386|gb|EFT99402.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TX0043]
 gi|315159038|gb|EFU03055.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TX0312]
 gi|315164891|gb|EFU08908.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TX1302]
 gi|315166352|gb|EFU10369.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TX1341]
 gi|315170249|gb|EFU14266.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TX1342]
 gi|327535737|gb|AEA94571.1| RsmD family RNA methyltransferase [Enterococcus faecalis OG1RF]
          Length = 217

 Score = 36.1 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 6/116 (5%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           +I    G  RL+  DG+   PT          ++     G + LD + GSG     A   
Sbjct: 36  VISGEYGGRRLKALDGDNTRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSR 95

Query: 245 RR-SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT-----EPRVAFNLLV 294
                I IE     + +  + IA  +     E+  +   R      E ++ F+L++
Sbjct: 96  GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 151


>gi|29376946|ref|NP_816100.1| methylase, putative [Enterococcus faecalis V583]
 gi|29344411|gb|AAO82170.1| methylase, putative [Enterococcus faecalis V583]
          Length = 184

 Score = 36.1 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 6/116 (5%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           +I    G  RL+  DG+   PT          ++     G + LD + GSG     A   
Sbjct: 3   VISGEYGGRRLKALDGDNTRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSR 62

Query: 245 RR-SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT-----EPRVAFNLLV 294
                I IE     + +  + IA  +     E+  +   R      E ++ F+L++
Sbjct: 63  GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 118


>gi|315579108|gb|EFU91299.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TX0630]
          Length = 217

 Score = 36.1 bits (82), Expect = 9.7,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 6/116 (5%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           +I    G  RL+  DG+   PT          ++     G + LD + GSG     A   
Sbjct: 36  VISGEYGGRRLKALDGDNTRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAVEAVSR 95

Query: 245 RR-SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT-----EPRVAFNLLV 294
                I IE     + +  + IA  +     E+  +   R      E ++ F+L++
Sbjct: 96  GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 151


>gi|301166174|emb|CBW25749.1| spermidine synthase [Bacteriovorax marinus SJ]
          Length = 311

 Score = 36.1 bits (82), Expect = 9.7,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 25/136 (18%)

Query: 14  NSIFEWKDKIIKGNSISVLEK---LPAKSVDLIF---ADPPYNLQLNGQLYRPD-HSLVD 66
             + + + KII  +++  +++   +P    DLI     DP   + L   LY+ D +  V+
Sbjct: 148 KGLDDPRVKIIFEDALKFIDREVLIPNNKYDLIISDSTDP---VGLAENLYKSDFYQKVN 204

Query: 67  A---------------VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
           +                 D +D  S ++  ++  +     C  +L   G  W        
Sbjct: 205 SLLTDEGIFMCQTESPFYDEYDIRSIYQNLESEFKIVQPICAPILIYPGVYWTFAYCSKK 264

Query: 112 FRIGTMLQNLNFWILN 127
           +    M +N      N
Sbjct: 265 WLGTDMKENKVEDYKN 280


>gi|302842024|ref|XP_002952556.1| hypothetical protein VOLCADRAFT_62647 [Volvox carteri f.
           nagariensis]
 gi|300262195|gb|EFJ46403.1| hypothetical protein VOLCADRAFT_62647 [Volvox carteri f.
           nagariensis]
          Length = 506

 Score = 36.1 bits (82), Expect = 9.7,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 205 PTQKPEAL-LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
           PT     + L        + G ++LDP+ G+G+    A       +G ++ 
Sbjct: 219 PTSMDTEMALVMCNQGGVRRGSLVLDPYAGTGSILVAAAHFGAKVMGADID 269


>gi|237798041|ref|ZP_04586502.1| ubiquinone/menaquinone biosynthesis methyltransferase ubie
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020892|gb|EGI00949.1| ubiquinone/menaquinone biosynthesis methyltransferase ubie
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 207

 Score = 36.1 bits (82), Expect = 9.7,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 55/173 (31%), Gaps = 25/173 (14%)

Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
           ++G + H   +    L R +         ILD   G G        +    +G++  + +
Sbjct: 27  REGTRDHDVSQNIDALLRHI--DGPKPWQILDFGCGPGRDLKTFTAMGHVAVGLDGSERF 84

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLI--QPGQILTNAQGNISAT 315
            ++A          G         +   P   F+ +    ++   P Q L      + AT
Sbjct: 85  AEMARA------ETGCEVFQQNFLELDLPEGRFDGIFANAVLFHIPKQELPRVLRELYAT 138

Query: 316 VCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
           +  +G L S    G            E  NG      E+ G  H +   R L+
Sbjct: 139 LKPEGVLFSSNPRG---------QNQEGWNG------ERYGAYHDLQAWRELL 176


>gi|290892199|ref|ZP_06555195.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|290558322|gb|EFD91840.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
          Length = 185

 Score = 36.1 bits (82), Expect = 9.7,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 42/140 (30%), Gaps = 7/140 (5%)

Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDY 257
            G    PT          ++     GDI+LD F GSG  G  A        + I+     
Sbjct: 17  PGNNTRPTTDKVKESLFSIIGPFFDGDIVLDLFAGSGGLGIEALSRGAERAVFIDQATLA 76

Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL----LVERGLIQPGQILTNAQG--N 311
           I    + +         E+     +R    +  N     L+        Q L    G   
Sbjct: 77  IKTIRQNLEGCHFTERAEVYRNDAERALKLLHKNEWKFDLIFLDPPYKKQQLEKLLGILE 136

Query: 312 ISATVCADGTLISGTELGSI 331
               V  +G +I   +  +I
Sbjct: 137 KLELVNENGRIICEHDKEAI 156


>gi|195614602|gb|ACG29131.1| hypothetical protein [Zea mays]
          Length = 558

 Score = 36.1 bits (82), Expect = 9.7,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
            +I+LD F G+GT G    +  +   G E+  + I+ A K
Sbjct: 404 SEIVLDLFCGTGTIGLTLARRAKHIYGYEVVPEAIEDARK 443


>gi|159044467|ref|YP_001533261.1| putative modification methylase [Dinoroseobacter shibae DFL 12]
 gi|157912227|gb|ABV93660.1| putative modification methylase [Dinoroseobacter shibae DFL 12]
          Length = 353

 Score = 36.1 bits (82), Expect = 9.7,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
           +DPF GSGT+   A +   S  G+E+   Y  + 
Sbjct: 1   MDPFMGSGTTAIEAVRYANSVHGVEVDP-YARLI 33


>gi|148988481|ref|ZP_01819928.1| RNA methyltransferase, TrmA family protein [Streptococcus
           pneumoniae SP6-BS73]
 gi|147926162|gb|EDK77236.1| RNA methyltransferase, TrmA family protein [Streptococcus
           pneumoniae SP6-BS73]
          Length = 543

 Score = 36.1 bits (82), Expect = 9.7,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 54/146 (36%), Gaps = 8/146 (5%)

Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGD 225
           N +A+           D++     G++            T+  E L    +  +  K  D
Sbjct: 247 NTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDD 306

Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
           +I+D + G GT G    K  +   G+E+  + ++ + K  AS+  + N      T +   
Sbjct: 307 VIIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSQKN-ASLNKITNAHYVCDTAENAM 365

Query: 286 PRVAFNLLVERGLIQPGQILTNAQGN 311
            +     L E   IQP  IL +    
Sbjct: 366 KK----WLKEG--IQPTVILVDPPRK 385


>gi|146342484|ref|YP_001207532.1| ribosomal protein L11 methyltransferase (L11 Mtase) [Bradyrhizobium
           sp. ORS278]
 gi|146195290|emb|CAL79315.1| Ribosomal protein L11 methyltransferase (L11 Mtase) [Bradyrhizobium
           sp. ORS278]
          Length = 298

 Score = 36.1 bits (82), Expect = 9.7,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 42/119 (35%), Gaps = 5/119 (4%)

Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI-GIEMKQDYI 258
           G   H T +   LL   ++    P   +LD   G+G     A K  R  + G ++    +
Sbjct: 134 GTGHHGTTRGCLLLLDHVLKRGSPQ-RVLDLGTGTGVLAIAAAKATRRSVLGSDIDAPSV 192

Query: 259 DIATK--RIASVQPLGN-IELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISA 314
            +A +  R+    PL   I  T            F+L++   L  P + L        A
Sbjct: 193 SVARENARLNGAGPLVQVIRATGFAAAEFAEAGPFDLVLANILANPLRQLAAPMQRHLA 251


>gi|328957253|ref|YP_004374639.1| putative enzyme with adenosyl binding site [Carnobacterium sp.
           17-4]
 gi|328673577|gb|AEB29623.1| putative enzyme with adenosyl binding site [Carnobacterium sp.
           17-4]
          Length = 190

 Score = 36.1 bits (82), Expect = 9.8,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 31/101 (30%), Gaps = 1/101 (0%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
           +I    G  +L+   G    PT          ++     G   LD F GSG     A   
Sbjct: 3   IITGEYGGRKLKAVPGNNTRPTTDKVKESIFNIIGPYFDGGNCLDLFAGSGGLAIEAVSR 62

Query: 245 RRS-FIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
                + I+     I    + I+  + L   E+      R 
Sbjct: 63  GMDSAVLIDRDSLAIKTIKENISVTKELEKFEIYRNDANRA 103


>gi|310780143|ref|YP_003968475.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Ilyobacter polytropus DSM 2926]
 gi|309749466|gb|ADO84127.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Ilyobacter polytropus DSM 2926]
          Length = 189

 Score = 36.1 bits (82), Expect = 9.8,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 3/88 (3%)

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSF-IGIEMKQDYIDIAT 262
           P  K E     +     +P  I++D   G+G+ G   A  L +    GIE+  D IDI  
Sbjct: 15  PMTKEEVRAVSVAKLQLEPHHILVDVGAGTGSVGIEAAGYLSQGSVYGIEINPDGIDIIK 74

Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAF 290
           K I   Q +GN  L         P++ +
Sbjct: 75  KNIEKFQ-IGNYNLIEGLAPENIPKIKY 101


>gi|296876678|ref|ZP_06900726.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis
           ATCC 15912]
 gi|296432180|gb|EFH17979.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis
           ATCC 15912]
          Length = 452

 Score = 36.1 bits (82), Expect = 9.8,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 8/107 (7%)

Query: 206 TQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
           T+  E L    +  +  K  D+++D + G GT G    K  +   G+E+  + ++ + K 
Sbjct: 286 TEMAEKLYQTAIDFAELKEEDVVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKN 345

Query: 265 IASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
            AS+  + N      T +        N L E   IQP  IL +    
Sbjct: 346 -ASLNGITNAHYVCDTAENAM----KNWLKEG--IQPTAILVDPPRK 385


>gi|283954225|ref|ZP_06371749.1| hypothetical protein C414_000090016 [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794243|gb|EFC32988.1| hypothetical protein C414_000090016 [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 233

 Score = 36.1 bits (82), Expect = 9.8,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 23/127 (18%)

Query: 3   QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSV---DLIFADPPYNLQLNGQLYR 59
           QK ++ + E      + +  I  G+          +SV   D I  +PP+  Q   +   
Sbjct: 65  QKENIELIEKNLKANQIQADIFHGDFNEF------QSVQKFDFIVCNPPFYRQGAYK--- 115

Query: 60  PDHSLVDAVTDSWDKFSS-FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
                    ++ W K  S F+ +     ++L     +LKPNGTL+       +  I  +L
Sbjct: 116 ---------SEDWHKNMSKFQEFLP-LDSFLTKANSILKPNGTLYFCYEALVLDEICFIL 165

Query: 119 QNLNFWI 125
           +++   I
Sbjct: 166 KDMKMKI 172


>gi|206577246|ref|YP_002236326.1| ribosomal protein L11 methyltransferase [Klebsiella pneumoniae 342]
 gi|288933314|ref|YP_003437373.1| ribosomal protein L11 methyltransferase [Klebsiella variicola
           At-22]
 gi|290511635|ref|ZP_06551004.1| 50S ribosomal protein L11 methyltransferase [Klebsiella sp. 1_1_55]
 gi|226710090|sp|B5XND9|PRMA_KLEP3 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|206566304|gb|ACI08080.1| ribosomal protein L11 methyltransferase [Klebsiella pneumoniae 342]
 gi|288888043|gb|ADC56361.1| ribosomal protein L11 methyltransferase [Klebsiella variicola
           At-22]
 gi|289776628|gb|EFD84627.1| 50S ribosomal protein L11 methyltransferase [Klebsiella sp. 1_1_55]
          Length = 293

 Score = 36.1 bits (82), Expect = 9.8,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 47/144 (32%), Gaps = 10/144 (6%)

Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRI 216
             + +  N+  ++         S   +P  +    + +     G   HPT    A+  + 
Sbjct: 95  WEREWMDNFHPMRFGERLWICPSWRDVPDENAVNVMLDPGLAFGTGTHPTT---AMCLQW 151

Query: 217 LVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
           L      G  ++D   GSG       K      IGI++    I  +     + Q  G  E
Sbjct: 152 LDGLDLQGKTVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRD---NAQRNGVSE 208

Query: 276 LTVLTGKRTEPRVAFNLLVERGLI 299
              L   + +P      +V   ++
Sbjct: 209 RLELYLPQDQPEAMKADVVVANIL 232


>gi|160946453|ref|ZP_02093662.1| hypothetical protein PEPMIC_00417 [Parvimonas micra ATCC 33270]
 gi|158447569|gb|EDP24564.1| hypothetical protein PEPMIC_00417 [Parvimonas micra ATCC 33270]
          Length = 406

 Score = 36.1 bits (82), Expect = 9.8,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 206 TQKPEALLSRILVSSTKPGDIIL-DPFFGSGTSGAVAKKLRRS 247
               E L S ++  S    + +  DPF GSGT    A  + R+
Sbjct: 202 APLKETLASAMISLSFWEPNRVFYDPFCGSGTLCIEAYMMGRN 244


>gi|29840640|ref|NP_829746.1| RNA methyltransferase [Chlamydophila caviae GPIC]
 gi|50401542|sp|Q821Q5|Y883_CHLCV RecName: Full=Uncharacterized RNA methyltransferase CCA_00883
 gi|29834990|gb|AAP05624.1| RNA methyltransferase, TrmA family, putative [Chlamydophila caviae
           GPIC]
          Length = 401

 Score = 36.1 bits (82), Expect = 9.8,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 48/139 (34%), Gaps = 4/139 (2%)

Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
           ++IW          T  Y      + +  ++    +P    S     +      P     
Sbjct: 179 SIIWEEKVSAKNAPT--YFRSHLIHGEPFIKQTLTLPKDGNSGVFHVRPRSFFQPQSLQG 236

Query: 211 ALLSRILVSSTKPGD--IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
           A +  I      P     +LD + G+GT G +     +  IG+E+  D ID A + I   
Sbjct: 237 AKIIEIAKEFMNPQGSETLLDLYCGAGTIGIMLSAYVKKVIGVEIVPDAIDSAKENILIN 296

Query: 269 QPLGNIELTVLTGKRTEPR 287
           +    IE+ +   K    R
Sbjct: 297 KKENLIEVYLEDAKTFCRR 315


>gi|327314509|ref|YP_004329946.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella denticola
           F0289]
 gi|326945121|gb|AEA21006.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella denticola
           F0289]
          Length = 478

 Score = 36.1 bits (82), Expect = 9.9,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 72/212 (33%), Gaps = 13/212 (6%)

Query: 60  PDHSLVDAVTDSWDKFSSFE---AYDAFTRAWLLACRRVLKPNGT-LWVIGSYHNIFRIG 115
            + ++   +T ++DK    E     D          R      G   + I + H + R  
Sbjct: 159 SEGAIGFHITGAFDKVYPIEKCWLMDDLCNQIRNDIRDYALGTGMKFYDIRAQHGLLR-D 217

Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
            M++N N      ++    +   +    +    H  +    P   +  Y  N       N
Sbjct: 218 IMVRNSNTGEWMVLIQFHYDEEEDDARAKALMQH--VSDRFPQITSLFYVDNQKGNDTFN 275

Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLH---PTQKPEALLS--RILVSSTKPGDIILDP 230
           +   +       I    E L+ K G K      T++   L S  R   + T   +++ D 
Sbjct: 276 DLDLIVFKGNDHIFETMEDLKFKVGPKSFYQTNTEQAYHLYSVARAFAALTG-NELVYDL 334

Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
           + G+GT      +  R  IGIE   + I+ A 
Sbjct: 335 YTGTGTIANFVARNARKVIGIEYVPEAIEDAK 366


>gi|195927327|pdb|2VS1|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna
           (Uracil-54, C5)-Methyltransferase In Complex With
           S-Adenosyl-L- Homocysteine
          Length = 425

 Score = 36.1 bits (82), Expect = 9.9,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 72/230 (31%), Gaps = 32/230 (13%)

Query: 38  KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR--- 94
             +DL           +G  +R            W K    +    F +    A  R   
Sbjct: 129 NRIDLAIT-------KDGIGFRERGK--------WWKIVDIDEXPVFGKTSREAIERLKE 173

Query: 95  -VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
            + +   ++W I       R   + +      +      K   +P+       ++    I
Sbjct: 174 FIEEEKISVWNIKKDEGFLRYMVLREGKFTEEVMVNFVTKEGNLPDPTNYFDFDS----I 229

Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL 213
           + S +      ++         E ++ R D +  +   +   +    + ++  +K   L+
Sbjct: 230 YWSVNRSKSDVSYGDIERFWGKEFIRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSELV 289

Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
                     G+ ILD + G GT G    K   +  G +  +  I++A +
Sbjct: 290 ---------EGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARR 330


>gi|148244499|ref|YP_001219193.1| methyltransferase [Candidatus Vesicomyosocius okutanii HA]
 gi|146326326|dbj|BAF61469.1| methyltransferase [Candidatus Vesicomyosocius okutanii HA]
          Length = 213

 Score = 36.1 bits (82), Expect = 10.0,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 22/45 (48%)

Query: 9   INENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
           + +N+  +   K  I   ++++ L     ++ D IF DPP+N   
Sbjct: 105 LQKNKALLKTNKINIFNQDALNFLSHKSTQTFDFIFLDPPFNKNY 149


>gi|146165377|ref|XP_001014893.2| conserved hypothetical protein [Tetrahymena thermophila]
 gi|146145559|gb|EAR94347.2| conserved hypothetical protein [Tetrahymena thermophila SB210]
          Length = 588

 Score = 36.1 bits (82), Expect = 10.0,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 9/71 (12%)

Query: 20  KDKIIKGNSISV-LEKLPAKSVDLIFADPPYN------LQLNGQLYRPDHSLVDAVTDSW 72
           K  II+ + I+  L ++  +  D I  DPPY            +  R          ++ 
Sbjct: 347 KPNIIRMDCINTNLREV--EIFDAIICDPPYGFRAMTRTAGKKEKKRNRKDKQSTNANTQ 404

Query: 73  DKFSSFEAYDA 83
           +  +  E  D 
Sbjct: 405 EDEAQHEEDDQ 415


>gi|73999118|ref|XP_857350.1| PREDICTED: similar to PRIP-interacting protein PIPMT isoform 3
           [Canis familiaris]
          Length = 267

 Score = 36.1 bits (82), Expect = 10.0,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 209 PEALLSRI--LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           PE +   I   VS +   DI++D F G G +        +  I I++    ID+A  
Sbjct: 88  PEKIAEHIAGRVSQSFKCDIVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARN 144


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.313    0.141    0.422 

Lambda     K      H
   0.267   0.0431    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,245,207,774
Number of Sequences: 14124377
Number of extensions: 318287145
Number of successful extensions: 894976
Number of sequences better than 10.0: 7303
Number of HSP's better than 10.0 without gapping: 7560
Number of HSP's successfully gapped in prelim test: 2919
Number of HSP's that attempted gapping in prelim test: 873731
Number of HSP's gapped (non-prelim): 15983
length of query: 375
length of database: 4,842,793,630
effective HSP length: 141
effective length of query: 234
effective length of database: 2,851,256,473
effective search space: 667194014682
effective search space used: 667194014682
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 82 (36.1 bits)